Query 011028
Match_columns 495
No_of_seqs 197 out of 595
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 19:18:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011028.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011028hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lzd_A DPH2; diphthamide biosy 100.0 1.5E-94 5E-99 741.6 36.9 322 3-375 37-358 (378)
2 1byk_A Protein (trehalose oper 78.0 4.5 0.00015 37.4 7.1 77 276-353 2-84 (255)
3 3hs3_A Ribose operon repressor 74.9 6.2 0.00021 37.2 7.3 79 272-353 6-90 (277)
4 3ixl_A Amdase, arylmalonate de 71.7 11 0.00039 35.6 8.2 80 274-359 115-216 (240)
5 3kke_A LACI family transcripti 68.1 6.7 0.00023 37.5 5.8 65 274-339 13-83 (303)
6 3egc_A Putative ribose operon 66.1 7.2 0.00025 36.8 5.5 80 272-352 4-91 (291)
7 3e61_A Putative transcriptiona 64.8 4 0.00014 38.2 3.4 62 273-335 5-72 (277)
8 3o74_A Fructose transport syst 64.2 7.8 0.00027 35.9 5.3 61 276-337 2-68 (272)
9 3jvd_A Transcriptional regulat 62.8 10 0.00036 36.8 6.1 74 274-353 62-141 (333)
10 3cs3_A Sugar-binding transcrip 62.4 15 0.0005 34.3 6.9 63 274-338 6-68 (277)
11 3brs_A Periplasmic binding pro 61.0 10 0.00034 35.6 5.5 80 274-353 3-95 (289)
12 3hr4_A Nitric oxide synthase, 60.0 22 0.00074 33.3 7.4 73 259-337 22-95 (219)
13 3gyb_A Transcriptional regulat 57.6 12 0.00041 34.9 5.3 62 274-339 3-71 (280)
14 3miz_A Putative transcriptiona 55.9 12 0.00041 35.5 5.1 80 273-353 10-97 (301)
15 3f6r_A Flavodoxin; FMN binding 55.6 18 0.00062 30.7 5.7 57 278-338 3-59 (148)
16 3l6u_A ABC-type sugar transpor 55.1 12 0.0004 35.2 4.8 66 273-339 5-76 (293)
17 3uug_A Multiple sugar-binding 55.0 12 0.00041 35.8 5.0 63 275-338 2-70 (330)
18 5nul_A Flavodoxin; electron tr 54.1 19 0.00066 30.1 5.6 55 279-338 1-55 (138)
19 3g1w_A Sugar ABC transporter; 52.8 13 0.00044 35.2 4.7 64 276-339 4-73 (305)
20 3qk7_A Transcriptional regulat 52.1 9.7 0.00033 36.1 3.6 66 273-338 3-76 (294)
21 3trh_A Phosphoribosylaminoimid 51.9 30 0.001 31.1 6.5 77 273-352 3-88 (169)
22 2iks_A DNA-binding transcripti 51.3 32 0.0011 32.2 7.2 79 274-353 18-105 (293)
23 2fep_A Catabolite control prot 51.1 10 0.00035 35.8 3.7 65 272-337 12-82 (289)
24 3m9w_A D-xylose-binding peripl 51.0 28 0.00097 33.0 6.9 77 276-353 2-88 (313)
25 2fz5_A Flavodoxin; alpha/beta 49.6 48 0.0016 27.2 7.4 56 279-339 2-57 (137)
26 3tb6_A Arabinose metabolism tr 49.4 23 0.0008 33.0 5.9 60 277-337 16-81 (298)
27 2xed_A Putative maleate isomer 49.2 58 0.002 31.2 8.7 81 274-359 144-244 (273)
28 3clk_A Transcription regulator 49.2 15 0.0005 34.6 4.4 79 274-353 6-93 (290)
29 1f4p_A Flavodoxin; electron tr 48.6 27 0.00092 29.4 5.7 57 278-339 2-59 (147)
30 1qys_A TOP7; alpha-beta, novel 48.0 37 0.0013 26.5 5.6 56 9-73 33-88 (106)
31 3fni_A Putative diflavin flavo 45.8 32 0.0011 30.0 5.8 62 276-339 4-67 (159)
32 3l49_A ABC sugar (ribose) tran 45.4 11 0.00038 35.3 2.9 64 273-337 2-71 (291)
33 3jy6_A Transcriptional regulat 44.7 33 0.0011 31.8 6.1 65 273-338 4-74 (276)
34 3o1i_D Periplasmic protein TOR 44.4 28 0.00095 32.6 5.6 65 275-339 4-75 (304)
35 1u11_A PURE (N5-carboxyaminoim 41.6 37 0.0013 30.9 5.5 80 270-352 15-103 (182)
36 3e3m_A Transcriptional regulat 41.2 29 0.001 33.8 5.3 64 274-338 68-137 (355)
37 2l2q_A PTS system, cellobiose- 41.1 83 0.0028 25.5 7.3 73 281-358 8-88 (109)
38 3c3k_A Alanine racemase; struc 41.0 46 0.0016 31.0 6.5 62 274-336 6-73 (285)
39 3ors_A N5-carboxyaminoimidazol 40.8 65 0.0022 28.8 6.8 75 275-352 2-85 (163)
40 3k9c_A Transcriptional regulat 40.7 55 0.0019 30.6 7.1 65 274-339 10-78 (289)
41 4grd_A N5-CAIR mutase, phospho 40.3 63 0.0022 29.1 6.8 76 274-352 10-94 (173)
42 3brq_A HTH-type transcriptiona 40.1 26 0.00088 32.7 4.5 62 275-337 18-87 (296)
43 3hly_A Flavodoxin-like domain; 39.9 38 0.0013 29.4 5.3 60 278-339 2-62 (161)
44 3g85_A Transcriptional regulat 39.7 36 0.0012 31.7 5.5 66 273-338 8-79 (289)
45 1gud_A ALBP, D-allose-binding 39.7 29 0.001 32.5 4.9 62 276-337 1-69 (288)
46 3oow_A Phosphoribosylaminoimid 39.2 68 0.0023 28.7 6.8 72 278-352 7-87 (166)
47 2fn9_A Ribose ABC transporter, 38.8 29 0.001 32.4 4.7 61 277-338 3-69 (290)
48 3h5o_A Transcriptional regulat 38.4 63 0.0022 31.0 7.2 64 274-338 60-129 (339)
49 3kuu_A Phosphoribosylaminoimid 38.3 68 0.0023 28.9 6.6 73 277-352 13-94 (174)
50 3k4h_A Putative transcriptiona 38.0 30 0.001 32.3 4.6 65 272-337 4-79 (292)
51 3lp6_A Phosphoribosylaminoimid 37.8 59 0.002 29.3 6.2 74 276-352 7-89 (174)
52 3ctp_A Periplasmic binding pro 36.6 71 0.0024 30.5 7.2 62 274-337 58-125 (330)
53 3gv0_A Transcriptional regulat 36.2 18 0.00063 33.9 2.8 63 273-336 5-75 (288)
54 1dbq_A Purine repressor; trans 35.9 61 0.0021 30.0 6.5 64 274-338 5-74 (289)
55 4b4k_A N5-carboxyaminoimidazol 34.8 82 0.0028 28.6 6.6 73 277-352 23-104 (181)
56 2h3h_A Sugar ABC transporter, 34.3 32 0.0011 32.7 4.2 61 277-338 2-68 (313)
57 2h0a_A TTHA0807, transcription 34.2 42 0.0014 30.9 4.9 75 278-353 1-83 (276)
58 2dgd_A 223AA long hypothetical 34.0 1.7E+02 0.006 26.4 9.2 80 274-359 106-207 (223)
59 2ioy_A Periplasmic sugar-bindi 33.8 45 0.0015 31.1 5.1 59 277-336 2-66 (283)
60 1tvm_A PTS system, galactitol- 33.1 1.4E+02 0.0049 24.3 7.6 63 281-353 25-90 (113)
61 1jye_A Lactose operon represso 33.1 59 0.002 31.5 6.1 62 274-335 59-126 (349)
62 3hcw_A Maltose operon transcri 32.7 20 0.00068 33.9 2.4 64 273-337 4-78 (295)
63 3gbv_A Putative LACI-family tr 32.3 77 0.0026 29.4 6.5 66 273-338 5-80 (304)
64 4fe7_A Xylose operon regulator 31.9 34 0.0011 34.3 4.1 59 273-333 22-82 (412)
65 3d8u_A PURR transcriptional re 31.7 40 0.0014 31.0 4.3 62 275-337 2-69 (275)
66 3kjx_A Transcriptional regulat 30.5 68 0.0023 30.9 6.0 61 276-337 68-134 (344)
67 3bbl_A Regulatory protein of L 30.3 56 0.0019 30.4 5.2 62 275-337 3-74 (287)
68 3rg8_A Phosphoribosylaminoimid 30.1 87 0.003 27.8 5.9 73 277-352 3-85 (159)
69 1qpz_A PURA, protein (purine n 29.9 1.3E+02 0.0044 28.7 7.9 63 274-337 56-124 (340)
70 1o4v_A Phosphoribosylaminoimid 29.7 1.2E+02 0.0042 27.4 6.9 74 276-352 13-95 (183)
71 1tjy_A Sugar transport protein 29.7 29 0.001 33.2 3.1 64 276-339 3-72 (316)
72 3s40_A Diacylglycerol kinase; 29.5 1.5E+02 0.0051 28.4 8.2 42 277-318 9-51 (304)
73 3ib7_A ICC protein; metallopho 29.2 62 0.0021 30.8 5.4 39 62-100 24-78 (330)
74 2dri_A D-ribose-binding protei 29.0 72 0.0024 29.4 5.6 59 277-336 2-66 (271)
75 3ksm_A ABC-type sugar transpor 28.8 48 0.0016 30.3 4.3 60 278-337 2-69 (276)
76 2fvy_A D-galactose-binding per 28.7 38 0.0013 31.8 3.6 62 276-338 2-70 (309)
77 1bvy_F Protein (cytochrome P45 28.7 86 0.0029 28.2 5.9 60 273-338 18-77 (191)
78 2i0f_A 6,7-dimethyl-8-ribityll 28.6 67 0.0023 28.4 4.9 61 277-337 13-83 (157)
79 3dbi_A Sugar-binding transcrip 28.5 84 0.0029 30.0 6.2 63 274-337 59-129 (338)
80 3rot_A ABC sugar transporter, 28.2 32 0.0011 32.4 3.0 63 277-339 4-73 (297)
81 3bil_A Probable LACI-family tr 28.0 71 0.0024 30.9 5.6 62 275-337 65-132 (348)
82 1e2b_A Enzyme IIB-cellobiose; 27.8 91 0.0031 25.3 5.4 72 279-358 6-85 (106)
83 2o20_A Catabolite control prot 27.8 81 0.0028 30.1 5.9 62 274-336 61-128 (332)
84 2i14_A Nicotinate-nucleotide p 27.8 1.1E+02 0.0038 31.0 7.1 58 276-333 233-294 (395)
85 3huu_A Transcription regulator 27.4 31 0.0011 32.6 2.8 64 274-338 20-94 (305)
86 3ox7_P MH027; urokinase-type p 26.2 16 0.00054 21.1 0.2 9 457-465 8-16 (23)
87 3d02_A Putative LACI-type tran 26.2 62 0.0021 30.1 4.7 61 276-336 4-70 (303)
88 2rgy_A Transcriptional regulat 25.8 86 0.0029 29.1 5.6 63 274-337 6-77 (290)
89 3ke3_A Putative serine-pyruvat 25.2 1.2E+02 0.0042 29.5 6.8 76 7-102 122-203 (379)
90 2jvf_A De novo protein M7; tet 24.8 1.9E+02 0.0064 22.1 6.0 52 264-315 32-86 (96)
91 1ykg_A SIR-FP, sulfite reducta 23.9 71 0.0024 27.7 4.3 56 278-338 11-66 (167)
92 2qu7_A Putative transcriptiona 23.7 60 0.002 30.1 4.0 62 274-337 6-73 (288)
93 1czn_A Flavodoxin; FMN binding 23.7 97 0.0033 26.5 5.1 55 278-338 2-56 (169)
94 2hsg_A Glucose-resistance amyl 23.6 1.1E+02 0.0037 29.2 5.9 63 274-337 58-126 (332)
95 2rjo_A Twin-arginine transloca 23.5 89 0.003 29.8 5.3 64 274-338 3-74 (332)
96 1xmp_A PURE, phosphoribosylami 23.4 1.1E+02 0.0036 27.6 5.2 73 277-352 12-93 (170)
97 2q9u_A A-type flavoprotein; fl 23.4 1.2E+02 0.0043 30.0 6.5 61 277-339 257-318 (414)
98 3qe2_A CPR, P450R, NADPH--cyto 23.4 32 0.0011 37.2 2.2 61 275-337 17-79 (618)
99 3end_A Light-independent proto 23.2 82 0.0028 30.0 4.9 51 263-315 28-78 (307)
100 8abp_A L-arabinose-binding pro 23.2 80 0.0027 29.4 4.8 60 277-338 3-68 (306)
101 1hqk_A 6,7-dimethyl-8-ribityll 22.8 1.4E+02 0.0047 26.3 5.8 60 278-337 14-81 (154)
102 2ark_A Flavodoxin; FMN, struct 22.8 95 0.0032 27.3 5.0 57 278-339 6-63 (188)
103 2i1o_A Nicotinate phosphoribos 21.4 81 0.0028 32.1 4.6 57 277-333 236-297 (398)
104 3h75_A Periplasmic sugar-bindi 21.2 1.2E+02 0.004 29.1 5.7 59 276-335 3-70 (350)
105 2qh8_A Uncharacterized protein 21.1 51 0.0017 31.2 2.9 63 274-337 6-79 (302)
106 2lti_A Astexin1; sidechain-TO- 21.0 30 0.001 20.5 0.7 10 460-469 4-13 (26)
107 2bru_C NAD(P) transhydrogenase 20.6 73 0.0025 28.7 3.5 33 301-337 82-115 (186)
108 3ck2_A Conserved uncharacteriz 20.6 79 0.0027 27.5 3.9 52 64-118 7-64 (176)
109 2qv7_A Diacylglycerol kinase D 20.6 2.3E+02 0.0077 27.5 7.7 39 278-316 26-65 (337)
110 2bon_A Lipid kinase; DAG kinas 20.3 1.5E+02 0.0052 28.8 6.3 57 277-335 30-90 (332)
111 2vk2_A YTFQ, ABC transporter p 20.3 82 0.0028 29.6 4.2 61 277-338 3-69 (306)
No 1
>3lzd_A DPH2; diphthamide biosynthesis, radical SAM enzyme, gene triplicat iron-sulfur cluster, biosynthetic protein; 2.10A {Pyrococcus horikoshii} PDB: 3lzc_A
Probab=100.00 E-value=1.5e-94 Score=741.59 Aligned_cols=322 Identities=21% Similarity=0.319 Sum_probs=289.9
Q ss_pred cccccchHHHHHHHHhCCCcEEEEeCCccchhhHHHHHHHHHHhhccCCCCCCCCCCCCCceeEEEEcCCccccCccchh
Q 011028 3 FELNYEIASTADFIYSRKFTRVALQFPDNLLKDSIRIVRALRAKLGSLRSSDGERGVDDKDIGLFVMADTTYGSCCVDEV 82 (495)
Q Consensus 3 ~~~~yei~~~i~~I~~~~~krVaLQfPD~Ll~~s~~V~~~L~~~l~~~~~~~~~~~~~~~~~~v~IlaDtsYGsCCVDev 82 (495)
..++|||++|+++|+++++||||||||||||.+|..|++.|++ .++++|||||||||||||||+
T Consensus 37 ~~y~fEi~kti~~I~~~~~krVaLQfPdgLl~~a~~Ia~~L~~----------------~~~e~~IlgDttYGACCVDe~ 100 (378)
T 3lzd_A 37 MLHEIPKSEILKELKRIGAKRVLIQSPEGLRREAEELAGFLEE----------------NNIEVFLHGEINYGACDPADR 100 (378)
T ss_dssp -CCSCCHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHT----------------TTCEEEEECSCCCCTTSCCHH
T ss_pred ccccccHHHHHHHHHhcCCCEEEEECCHHHHHHHHHHHHHHhh----------------cCceEEEEcCCcccCcccCHH
Confidence 4688999999999999999999999999999999999999986 148999999999999999999
Q ss_pred hhcccCCcEEEEecCCCCCCCCCCCeEEEccccCCChHHHHHHHhhhhcCCCCcEEEEecccchhhhHHHHHHHHhhccC
Q 011028 83 GASHVDADCVIHYGHTCLSPTSTLPAFFVFGKASINTSNCIENLSKHALTNGKPILVLYGLEYAHAIPHIREAVKVASSS 162 (495)
Q Consensus 83 aA~hv~aD~iVHyGhsCls~~~~lpviYVf~~~~id~~~~~~~l~~~~~~~~~~v~l~~dvqy~~~l~~l~~~L~~~~~~ 162 (495)
+|+|++||+|||||||||++++++||+|||++.++|++++++.+.+.+.+..++|+|++|+||.|+++.+++.|++.++.
T Consensus 101 aA~~v~aD~lVHyGHsCL~~~~~lpvlYVf~~~~iD~~~~~~~~~~~~~~~~~~i~L~~tiq~~~~l~~~~~~L~~~g~~ 180 (378)
T 3lzd_A 101 EAKLVGCDALIHLGHSYMKLPLEVPTIFVPAFARVSVVEALKENIGEIKKLGRKIIVTTTAQHIHQLKEAKEFLESEGFE 180 (378)
T ss_dssp HHHHTTCSEEEEEECCCCSCCCSSCEEEEECCCCCCCHHHHHHTHHHHHTTCSEEEEEECGGGGGGHHHHHHHHHHTTCE
T ss_pred HHhhcCCCEEEEcCCCcCCcccCCCEEEEeccCCCCHHHHHHHHHHhccCcCCeEEEEEcHHHHHHHHHHHHHHHHcCCe
Confidence 99999999999999999999999999999999999999999999877655467899999999999999999999987642
Q ss_pred CCCCcceeeeeeccceeeecCCCCCCCCCCCCCCcccccccCcccccCCcccccceEEEEEcCCCchhhhhhhhcCCceE
Q 011028 163 YGSGLKLEINFADVMCTVITPSKDHKSLCGPAGGCTRHTIGGLVWNIPDRKKMEEHLLFWIGSDNSAFANVVLTFNGCEI 242 (495)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gc~~~~~~~~~~~~~~~~~~~~~~l~~Ig~~~~~l~~l~l~~~~~~v 242 (495)
+.+ .+...+..++|+++||+++.+. .+.+ .++|||+|.||+++++|+ +++++
T Consensus 181 --------v~i--------~~~~~~~~~~gqvLGC~~~~~~---------~~~d--~~lyvG~g~FH~~~l~l~-~~~~v 232 (378)
T 3lzd_A 181 --------VSI--------GRGDSRISWPGQVLGCNYSVAK---------VRGE--GILFIGSGIFHPLGLAVA-TRKKV 232 (378)
T ss_dssp --------EEC--------CCCCTTCSSTTBCBTTBCGGGC---------SSCS--EEEEESSSSHHHHHHHHH-HCSEE
T ss_pred --------EEe--------cCCCCCCCCCCccccccCCCcc---------cCCc--eEEEEcCCchhHHHHHhc-cCCcE
Confidence 221 2223344678999999876541 1222 678999999999999999 89999
Q ss_pred EEecCCCCccccccccHHHHHHHHHHHHHHHhcCCeEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHH
Q 011028 243 VRYDATEERLLTDVSQPLKILKRRYYLVEKAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL 322 (495)
Q Consensus 243 ~~yDP~~~~~~~~~~~~~r~l~rRy~~I~kar~A~~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vgkln~aKL 322 (495)
|+|||+++++..+ +++|+|||||++|+|||+|++|||||||||+|+|+.++++|+++|+++|||+|+|+||||||+||
T Consensus 233 ~~yDP~s~~~~~~--~~~~~l~rR~~~I~kA~dA~~~GIIvgTLg~Q~~~~~~~~L~~ll~~~Gkk~y~i~vg~inp~KL 310 (378)
T 3lzd_A 233 LAIDPYTKAFSWI--DPERFIRKRWAQIAKAMDAKKFGVIVSIKKGQLRLAEAKRIVKLLKKHGREARLIVMNDVNYHKL 310 (378)
T ss_dssp EEECTTTCCEEEC--CCHHHHHHHHHHHHHHTTCCEEEEEEECSTTTCCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHH
T ss_pred EEECCCCCceeec--cHHHHHHHHHHHHHHHhcCCEEEEEEeCCccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHH
Confidence 9999999987554 48999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcEEEEecCCCcccccccCCCCcccCHHHHHHhhCCCCcCccceeeec
Q 011028 323 ANFPECDVFINVSCAQTALLDSKEFLAPVITPFEAMLAFGRGTQWTGAYVMEF 375 (495)
Q Consensus 323 aNF~eID~fV~vaCPr~si~d~~~f~kPViTP~El~vAL~~~~~W~g~y~~Df 375 (495)
+|| +||+||++||||++|||+++|+||||||||++|||+... .|.+|+
T Consensus 311 anF-~iD~fV~vaCPrlsidd~~~F~KPvLTPyE~evAL~~~~----~y~~de 358 (378)
T 3lzd_A 311 EGF-PFEAYVVVACPRVPLDDYGAWRKPVLTPKEVEILLGLRE----EYEFDE 358 (378)
T ss_dssp TTS-CCSEEEECSCTHHHHSCCSCCSSCEECHHHHHHHTTSCC----SCCCCC
T ss_pred hCC-CCCEEEEecCCCccccchhhCCCcccCHHHHHHHhCCCC----CCCCcc
Confidence 999 699999999999999999999999999999999999754 555554
No 2
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=77.96 E-value=4.5 Score=37.44 Aligned_cols=77 Identities=9% Similarity=0.097 Sum_probs=51.9
Q ss_pred CCeEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHH----HcCC--CCCcEEEEecCCCcccccccCCCC
Q 011028 276 ANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK----LANF--PECDVFINVSCAQTALLDSKEFLA 349 (495)
Q Consensus 276 A~~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vgkln~aK----LaNF--~eID~fV~vaCPr~si~d~~~f~k 349 (495)
.++||+|+..+.-..+..+++.+++.++++|....++.. .-++++ +..+ ..+|.+|+.++........++...
T Consensus 2 s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~l~~~~~ 80 (255)
T 1byk_A 2 DKVVAIIVTRLDSLSENLAVQTMLPAFYEQGYDPIMMES-QFSPQLVAEHLGVLKRRNIDGVVLFGFTGITEEMLAHWQS 80 (255)
T ss_dssp CCEEEEEESCTTCHHHHHHHHHHHHHHHHHTCEEEEEEC-TTCHHHHHHHHHHHHTTTCCEEEEECCTTCCTTTSGGGSS
T ss_pred CCEEEEEeCCCCCccHHHHHHHHHHHHHHcCCEEEEEeC-CCcHHHHHHHHHHHHhcCCCEEEEecCccccHHHHHhcCC
Confidence 478999999887677789999999999999987655543 334443 2222 369999998875433222233345
Q ss_pred cccC
Q 011028 350 PVIT 353 (495)
Q Consensus 350 PViT 353 (495)
|+|+
T Consensus 81 pvV~ 84 (255)
T 1byk_A 81 SLVL 84 (255)
T ss_dssp SEEE
T ss_pred CEEE
Confidence 7653
No 3
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=74.93 E-value=6.2 Score=37.16 Aligned_cols=79 Identities=22% Similarity=0.342 Sum_probs=54.2
Q ss_pred HHhcCCeEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHH----cCC--CCCcEEEEecCCCccccccc
Q 011028 272 KAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSCAQTALLDSK 345 (495)
Q Consensus 272 kar~A~~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vgkln~aKL----aNF--~eID~fV~vaCPr~si~d~~ 345 (495)
+.+..++||+|+..+.-..+..+++.+++.++++|.+..++.-..-++++- ..+ ..+|..|+.+ +. +....
T Consensus 6 ~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~-~~--~~~~~ 82 (277)
T 3hs3_A 6 YQKKSKMIGIIIPDLNNRFYAQIIDGIQEVIQKEGYTALISFSTNSDVKKYQNAIINFENNNVDGIITSA-FT--IPPNF 82 (277)
T ss_dssp --CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEEC-CC--CCTTC
T ss_pred hcCCCCEEEEEeCCCCChhHHHHHHHHHHHHHHCCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEcc-hH--HHHHH
Confidence 345678999999998877788999999999999999844444444455432 222 3699999987 32 33334
Q ss_pred CCCCcccC
Q 011028 346 EFLAPVIT 353 (495)
Q Consensus 346 ~f~kPViT 353 (495)
+...|+|+
T Consensus 83 ~~~iPvV~ 90 (277)
T 3hs3_A 83 HLNTPLVM 90 (277)
T ss_dssp CCSSCEEE
T ss_pred hCCCCEEE
Confidence 45567763
No 4
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=71.74 E-value=11 Score=35.59 Aligned_cols=80 Identities=14% Similarity=0.162 Sum_probs=56.7
Q ss_pred hcCCeEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEE---------cCCCCHHHHc--------CCCCCcEEEEecC
Q 011028 274 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLV---------MGKPNPAKLA--------NFPECDVFINVSC 336 (495)
Q Consensus 274 r~A~~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~---------vgkln~aKLa--------NF~eID~fV~vaC 336 (495)
..+++||||- | ....+-+.+++.++++|.++.... +|+++++.+. .-+++|+.|+ +|
T Consensus 115 ~g~~rvgllt-p----y~~~~~~~~~~~l~~~Giev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~adaivL-~C 188 (240)
T 3ixl_A 115 LGVRRVALAT-A----YIDDVNERLAAFLAEESLVPTGCRSLGITGVEAMARVDTATLVDLCVRAFEAAPDSDGILL-SS 188 (240)
T ss_dssp TTCSEEEEEE-S----SCHHHHHHHHHHHHHTTCEEEEEEECCCCCHHHHHTCCHHHHHHHHHHHHHTSTTCSEEEE-EC
T ss_pred hCCCEEEEEe-C----ChHHHHHHHHHHHHHCCCEEeccccCCCCCcchhhcCCHHHHHHHHHHHhhcCCCCCEEEE-eC
Confidence 4689999984 4 335667888999999999876543 3455554442 3357887664 59
Q ss_pred CCccccc-----ccCCCCcccCHHHHHH
Q 011028 337 AQTALLD-----SKEFLAPVITPFEAML 359 (495)
Q Consensus 337 Pr~si~d-----~~~f~kPViTP~El~v 359 (495)
-+.+..+ ..++-+||+++-++.+
T Consensus 189 T~l~~l~~i~~le~~lg~PVids~~a~~ 216 (240)
T 3ixl_A 189 GGLLTLDAIPEVERRLGVPVVSSSPAGF 216 (240)
T ss_dssp TTSCCTTHHHHHHHHHSSCEEEHHHHHH
T ss_pred CCCchhhhHHHHHHHhCCCEEeHHHHHH
Confidence 9998764 4668899999977644
No 5
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=68.06 E-value=6.7 Score=37.48 Aligned_cols=65 Identities=11% Similarity=0.080 Sum_probs=46.8
Q ss_pred hcCCeEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHH----cCC--CCCcEEEEecCCCc
Q 011028 274 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSCAQT 339 (495)
Q Consensus 274 r~A~~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vgkln~aKL----aNF--~eID~fV~vaCPr~ 339 (495)
+..++||+|+..+.-..+..+++.+++.++++|....++..+. ++++. ..+ ..+|.+|+.++...
T Consensus 13 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 83 (303)
T 3kke_A 13 SRSGTIGLIVPDVNNAVFADMFSGVQMAASGHSTDVLLGQIDA-PPRGTQQLSRLVSEGRVDGVLLQRREDF 83 (303)
T ss_dssp ----CEEEEESCTTSTTHHHHHHHHHHHHHHTTCCEEEEECCS-TTHHHHHHHHHHHSCSSSEEEECCCTTC
T ss_pred CCCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEEeCCC-ChHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 3467999999998877789999999999999999987766553 33221 111 36999999887544
No 6
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=66.13 E-value=7.2 Score=36.78 Aligned_cols=80 Identities=13% Similarity=0.204 Sum_probs=54.0
Q ss_pred HHhcCCeEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHH----cCC--CCCcEEEEecCCCcc--ccc
Q 011028 272 KAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSCAQTA--LLD 343 (495)
Q Consensus 272 kar~A~~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vgkln~aKL----aNF--~eID~fV~vaCPr~s--i~d 343 (495)
+.+..++||+|+..+.-..+..+++.+++.+++.|.+..++..+. ++++. ..+ ..+|.+|+.+..... +..
T Consensus 4 ~~~~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~ 82 (291)
T 3egc_A 4 RSKRSNVVGLIVSDIENVFFAEVASGVESEARHKGYSVLLANTAE-DIVREREAVGQFFERRVDGLILAPSEGEHDYLRT 82 (291)
T ss_dssp ---CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTT-CHHHHHHHHHHHHHTTCSEEEECCCSSCCHHHHH
T ss_pred ccCCCcEEEEEECCCcchHHHHHHHHHHHHHHHCCCEEEEEeCCC-CHHHHHHHHHHHHHCCCCEEEEeCCCCChHHHHH
Confidence 345678999999988777778999999999999998877665543 44432 122 369999998775411 112
Q ss_pred ccCCCCccc
Q 011028 344 SKEFLAPVI 352 (495)
Q Consensus 344 ~~~f~kPVi 352 (495)
..+-..|+|
T Consensus 83 ~~~~~iPvV 91 (291)
T 3egc_A 83 ELPKTFPIV 91 (291)
T ss_dssp SSCTTSCEE
T ss_pred hhccCCCEE
Confidence 334456766
No 7
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=64.83 E-value=4 Score=38.24 Aligned_cols=62 Identities=15% Similarity=0.284 Sum_probs=44.3
Q ss_pred HhcCCeEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHH----cCC--CCCcEEEEec
Q 011028 273 AKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVS 335 (495)
Q Consensus 273 ar~A~~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vgkln~aKL----aNF--~eID~fV~va 335 (495)
.+..++||+|+..+.-..+..+++.+++.++++|.+..++.... ++++. .++ ..+|.+|+.+
T Consensus 5 ~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~~dgiIi~~ 72 (277)
T 3e61_A 5 KRKSKLIGLLLPDMSNPFFTLIARGVEDVALAHGYQVLIGNSDN-DIKKAQGYLATFVSHNCTGMISTA 72 (277)
T ss_dssp -----CEEEEESCTTSHHHHHHHHHHHHHHHHTTCCEEEEECTT-CHHHHHHHHHHHHHTTCSEEEECG
T ss_pred cCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCC-CHHHHHHHHHHHHhCCCCEEEEec
Confidence 34567999999998877788999999999999999877655543 54432 122 3699999977
No 8
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=64.20 E-value=7.8 Score=35.93 Aligned_cols=61 Identities=18% Similarity=0.351 Sum_probs=47.1
Q ss_pred CCeEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHc----CC--CCCcEEEEecCC
Q 011028 276 ANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLA----NF--PECDVFINVSCA 337 (495)
Q Consensus 276 A~~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vgkln~aKLa----NF--~eID~fV~vaCP 337 (495)
.++||+|+.++.-..+..+++.+++.++++|.+..++..+ -++++.. .+ ..+|.+|+.++.
T Consensus 2 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~~vdgiIi~~~~ 68 (272)
T 3o74_A 2 TRTLGFILPDLENPSYARIAKQLEQGARARGYQLLIASSD-DQPDSERQLQQLFRARRCDALFVASCL 68 (272)
T ss_dssp CCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEECT-TCHHHHHHHHHHHHHTTCSEEEECCCC
T ss_pred ceEEEEEeCCCcChhHHHHHHHHHHHHHHCCCEEEEEeCC-CCHHHHHHHHHHHHHcCCCEEEEecCc
Confidence 5799999999887778899999999999999987776654 3554321 11 269999987765
No 9
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=62.77 E-value=10 Score=36.84 Aligned_cols=74 Identities=14% Similarity=0.184 Sum_probs=53.5
Q ss_pred hcCCeEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHH----cCC--CCCcEEEEecCCCcccccccCC
Q 011028 274 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSCAQTALLDSKEF 347 (495)
Q Consensus 274 r~A~~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vgkln~aKL----aNF--~eID~fV~vaCPr~si~d~~~f 347 (495)
+..++||+|+..+.-..+..+++.+++.++++|....++..+. +++. ..+ ..+|.+|+.+. +....+.
T Consensus 62 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~--~~~~~~~~~~l~~~~vdGiIi~~~----~~~~~~~ 135 (333)
T 3jvd_A 62 HRSALVGVIVPDLSNEYYSESLQTIQQDLKAAGYQMLVAEANS--VQAQDVVMESLISIQAAGIIHVPV----VGSIAPE 135 (333)
T ss_dssp --CCEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEECCS--HHHHHHHHHHHHHHTCSEEEECCC----TTCCC-C
T ss_pred CCCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEECCCC--hHHHHHHHHHHHhCCCCEEEEcch----HHHHhhC
Confidence 3468999999988777778999999999999999888777766 4432 222 26999999877 3334445
Q ss_pred CCcccC
Q 011028 348 LAPVIT 353 (495)
Q Consensus 348 ~kPViT 353 (495)
..|+|+
T Consensus 136 ~iPvV~ 141 (333)
T 3jvd_A 136 GIPMVQ 141 (333)
T ss_dssp CSCEEE
T ss_pred CCCEEE
Confidence 567763
No 10
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=62.42 E-value=15 Score=34.35 Aligned_cols=63 Identities=16% Similarity=0.116 Sum_probs=48.6
Q ss_pred hcCCeEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHcCCCCCcEEEEecCCC
Q 011028 274 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQ 338 (495)
Q Consensus 274 r~A~~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vgkln~aKLaNF~eID~fV~vaCPr 338 (495)
+..++||+|+..+.-..+..+++.+++.++++|....++..+ -++++..++ .+|..|+.++..
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~-~vdgiI~~~~~~ 68 (277)
T 3cs3_A 6 RQTNIIGVYLADYGGSFYGELLEGIKKGLALFDYEMIVCSGK-KSHLFIPEK-MVDGAIILDWTF 68 (277)
T ss_dssp CCCCEEEEEECSSCTTTHHHHHHHHHHHHHTTTCEEEEEEST-TTTTCCCTT-TCSEEEEECTTS
T ss_pred cCCcEEEEEecCCCChhHHHHHHHHHHHHHHCCCeEEEEeCC-CCHHHHhhc-cccEEEEecCCC
Confidence 346799999998877777899999999999999887655443 345555555 899999987643
No 11
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=60.99 E-value=10 Score=35.58 Aligned_cols=80 Identities=8% Similarity=-0.051 Sum_probs=51.4
Q ss_pred hcCCeEEEEEcccc--ccCcHHHHHHHHHHHHHcCCcEEEEEcC-CCCHHHH----cCC--CCCcEEEEecCCCccc---
Q 011028 274 KDANIIGVLVGTLG--VAGYLHMIHQMKELITKAGKKAYTLVMG-KPNPAKL----ANF--PECDVFINVSCAQTAL--- 341 (495)
Q Consensus 274 r~A~~~GIlvgTl~--~q~~~~~i~~L~~li~~~GKk~y~~~vg-kln~aKL----aNF--~eID~fV~vaCPr~si--- 341 (495)
+..++||+|+..++ -..+..+++.+++.++++|.+..++..+ .-++++. ..+ ..+|.+|+.++....+
T Consensus 3 ~~~~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~ 82 (289)
T 3brs_A 3 LKQYYMICIPKVLDDSSDFWSVLVEGAQMAAKEYEIKLEFMAPEKEEDYLVQNELIEEAIKRKPDVILLAAADYEKTYDA 82 (289)
T ss_dssp --CCEEEEECSCCCSSSHHHHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHTCCSEEEECCSCTTTTHHH
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCChHHhHHH
Confidence 34679999998877 5667799999999999999775554442 3454432 222 3699999887754431
Q ss_pred -ccccCCCCcccC
Q 011028 342 -LDSKEFLAPVIT 353 (495)
Q Consensus 342 -~d~~~f~kPViT 353 (495)
....+...|||+
T Consensus 83 ~~~~~~~~iPvV~ 95 (289)
T 3brs_A 83 AKEIKDAGIKLIV 95 (289)
T ss_dssp HTTTGGGTCEEEE
T ss_pred HHHHHHCCCcEEE
Confidence 122234457664
No 12
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens}
Probab=60.05 E-value=22 Score=33.35 Aligned_cols=73 Identities=14% Similarity=0.097 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHhcCC-eEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHcCCCCCcEEEEecCC
Q 011028 259 PLKILKRRYYLVEKAKDAN-IIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCA 337 (495)
Q Consensus 259 ~~r~l~rRy~~I~kar~A~-~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vgkln~aKLaNF~eID~fV~vaCP 337 (495)
..+..+-.-.+|.++++.+ .+.|+.||..| +...++++|.+.+ ++|.++-++-+++.+++.|.+ -+.+|++ ||
T Consensus 22 ~~~av~~~~~l~~~~~~~~~kv~IlYgS~tG-nte~~A~~La~~l-~~g~~v~v~~l~~~~~~~l~~---~~~vI~~-ts 95 (219)
T 3hr4_A 22 LVKAVLFACMLMRKTMASRVRVTILFATETG-KSEALAWDLGALF-SCAFNPKVVCMDKYRLSCLEE---ERLLLVV-TS 95 (219)
T ss_dssp HHHHHHHHHHHHHHHHHTSCEEEEEEECSSS-HHHHHHHHHHHHH-TTTSEEEEEEGGGCCGGGGGT---CSEEEEE-EE
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEEECCch-HHHHHHHHHHHHH-HcCCCeEEEEcccCCHhHhcc---CCeEEEE-Ee
Confidence 4566666677999999875 89999999863 4578889998887 478888888899988877754 4444444 44
No 13
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=57.56 E-value=12 Score=34.88 Aligned_cols=62 Identities=13% Similarity=0.203 Sum_probs=47.2
Q ss_pred hcCCeEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHH-------HcCCCCCcEEEEecCCCc
Q 011028 274 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK-------LANFPECDVFINVSCAQT 339 (495)
Q Consensus 274 r~A~~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vgkln~aK-------LaNF~eID~fV~vaCPr~ 339 (495)
+..++||+|+..+.-..+..+++.+++.++++|....++..+ ++++ |.+ ..+|..| +++...
T Consensus 3 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~--~~~~~~~~~~~l~~-~~vdgiI-~~~~~~ 71 (280)
T 3gyb_A 3 LRTQLIAVLIDDYSNPWFIDLIQSLSDVLTPKGYRLSVIDSL--TSQAGTDPITSALS-MRPDGII-IAQDIP 71 (280)
T ss_dssp -CCCEEEEEESCTTSGGGHHHHHHHHHHHGGGTCEEEEECSS--SSCSSSCHHHHHHT-TCCSEEE-EESCC-
T ss_pred CccCEEEEEeCCCCChHHHHHHHHHHHHHHHCCCEEEEEeCC--CchHHHHHHHHHHh-CCCCEEE-ecCCCC
Confidence 457899999999887788999999999999999987777666 4432 222 3799999 766543
No 14
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=55.88 E-value=12 Score=35.46 Aligned_cols=80 Identities=14% Similarity=0.277 Sum_probs=54.5
Q ss_pred HhcCCeEEEEEccccccCcH-HHHHHHHHHHHHcCCcEEEEEcCCCCHHHH----cCC--CCCcEEEEecCCCccc-ccc
Q 011028 273 AKDANIIGVLVGTLGVAGYL-HMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSCAQTAL-LDS 344 (495)
Q Consensus 273 ar~A~~~GIlvgTl~~q~~~-~~i~~L~~li~~~GKk~y~~~vgkln~aKL----aNF--~eID~fV~vaCPr~si-~d~ 344 (495)
.+..++||+|+..+.-..+. .+++.+++.++++|....++..+ -++++- ..+ ..+|.+|+.+...... ...
T Consensus 10 ~~~s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~~~~~~ 88 (301)
T 3miz_A 10 SSRSNTFGIITDYVSTTPYSVDIVRGIQDWANANGKTILIANTG-GSSEREVEIWKMFQSHRIDGVLYVTMYRRIVDPES 88 (301)
T ss_dssp --CCCEEEEEESSTTTCCSCHHHHHHHHHHHHHTTCEEEEEECT-TCHHHHHHHHHHHHHTTCSEEEEEEEEEEECCCCC
T ss_pred hCCCCEEEEEeCCCcCcccHHHHHHHHHHHHHHCCCEEEEEeCC-CChHHHHHHHHHHHhCCCCEEEEecCCccHHHHHH
Confidence 34578999999998877788 99999999999999887665543 344332 112 2699999987654332 223
Q ss_pred cCCCCcccC
Q 011028 345 KEFLAPVIT 353 (495)
Q Consensus 345 ~~f~kPViT 353 (495)
.+...|||+
T Consensus 89 ~~~~iPvV~ 97 (301)
T 3miz_A 89 GDVSIPTVM 97 (301)
T ss_dssp TTCCCCEEE
T ss_pred HhCCCCEEE
Confidence 344567763
No 15
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=55.62 E-value=18 Score=30.66 Aligned_cols=57 Identities=18% Similarity=0.318 Sum_probs=43.3
Q ss_pred eEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHcCCCCCcEEEEecCCC
Q 011028 278 IIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQ 338 (495)
Q Consensus 278 ~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vgkln~aKLaNF~eID~fV~vaCPr 338 (495)
.+.|+.+|..+ +...+++.|.+.+++.|.++-++-+.+.++..|.. +.|. |+++||-
T Consensus 3 ki~I~y~S~tG-nT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~l~~--~~d~-ii~g~pt 59 (148)
T 3f6r_A 3 KVLIVFGSSTG-NTESIAQKLEELIAAGGHEVTLLNAADASAENLAD--GYDA-VLFGCSA 59 (148)
T ss_dssp EEEEEEECSSS-HHHHHHHHHHHHHHTTTCEEEEEETTTBCCTTTTT--TCSE-EEEEECE
T ss_pred eEEEEEECCCc-hHHHHHHHHHHHHHhCCCeEEEEehhhCCHhHhcc--cCCE-EEEEecc
Confidence 57899999754 56899999999999999988888888877665541 4564 4556664
No 16
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=55.14 E-value=12 Score=35.17 Aligned_cols=66 Identities=12% Similarity=0.065 Sum_probs=46.9
Q ss_pred HhcCCeEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHH----cCC--CCCcEEEEecCCCc
Q 011028 273 AKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSCAQT 339 (495)
Q Consensus 273 ar~A~~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vgkln~aKL----aNF--~eID~fV~vaCPr~ 339 (495)
.+..++||+|+..+.-..+..+++.+++.++++|.+..++..+ -++++. .++ ..+|.+|+.++...
T Consensus 5 ~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 76 (293)
T 3l6u_A 5 SPKRNIVGFTIVNDKHEFAQRLINAFKAEAKANKYEALVATSQ-NSRISEREQILEFVHLKVDAIFITTLDDV 76 (293)
T ss_dssp ----CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEECS-SCHHHHHHHHHHHHHTTCSEEEEECSCTT
T ss_pred CCCCcEEEEEEecCCcHHHHHHHHHHHHHHHHcCCEEEEECCC-CCHHHHHHHHHHHHHcCCCEEEEecCChH
Confidence 3457899999999877777899999999999999987665543 444332 222 36999999877544
No 17
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=55.01 E-value=12 Score=35.85 Aligned_cols=63 Identities=16% Similarity=0.188 Sum_probs=48.7
Q ss_pred cCCeEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHH----cCC--CCCcEEEEecCCC
Q 011028 275 DANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSCAQ 338 (495)
Q Consensus 275 ~A~~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vgkln~aKL----aNF--~eID~fV~vaCPr 338 (495)
+.++||+|+..+.-..+..+++.+++.++++|.+..++. ..-++++- .++ ..+|+.|+.++..
T Consensus 2 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~-~~~~~~~~~~~i~~~~~~~vdgiIi~~~~~ 70 (330)
T 3uug_A 2 DKGSVGIAMPTKSSARWIDDGNNIVKQLQEAGYKTDLQY-ADDDIPNQLSQIENMVTKGVKVLVIASIDG 70 (330)
T ss_dssp CCCEEEEEECCSSSTHHHHHHHHHHHHHHHTTCEEEEEE-CTTCHHHHHHHHHHHHHHTCSEEEECCSSG
T ss_pred CCcEEEEEeCCCcchHHHHHHHHHHHHHHHcCCEEEEee-CCCCHHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 568999999999877888999999999999999866555 55565542 222 2699999987764
No 18
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=54.10 E-value=19 Score=30.05 Aligned_cols=55 Identities=18% Similarity=0.255 Sum_probs=43.3
Q ss_pred EEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHcCCCCCcEEEEecCCC
Q 011028 279 IGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQ 338 (495)
Q Consensus 279 ~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vgkln~aKLaNF~eID~fV~vaCPr 338 (495)
|.|+-+|.. -+...+++.|.+.++++|..+-++-+.+.++.+|.+ .|. |+++||-
T Consensus 1 i~I~Y~S~t-GnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~l~~---~d~-iiig~pt 55 (138)
T 5nul_A 1 MKIVYWSGT-GNTEKMAELIAKGIIESGKDVNTINVSDVNIDELLN---EDI-LILGCSA 55 (138)
T ss_dssp CEEEEECSS-SHHHHHHHHHHHHHHHTTCCCEEEEGGGCCHHHHTT---CSE-EEEEECC
T ss_pred CEEEEECCC-chHHHHHHHHHHHHHHCCCeEEEEEhhhCCHHHHhh---CCE-EEEEcCc
Confidence 457788875 356899999999999999998899999999888755 454 5556774
No 19
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=52.77 E-value=13 Score=35.17 Aligned_cols=64 Identities=2% Similarity=-0.124 Sum_probs=49.2
Q ss_pred CCeEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHcC----C--CCCcEEEEecCCCc
Q 011028 276 ANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLAN----F--PECDVFINVSCAQT 339 (495)
Q Consensus 276 A~~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vgkln~aKLaN----F--~eID~fV~vaCPr~ 339 (495)
.++||+|+...+-..+..+++.+++.++++|.+..++....-++++... + ..+|+.|+.++...
T Consensus 4 ~~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~ 73 (305)
T 3g1w_A 4 NETYMMITFQSGMDYWKRCLKGFEDAAQALNVTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAIDPV 73 (305)
T ss_dssp -CEEEEEESSTTSTHHHHHHHHHHHHHHHHTCEEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCSSTT
T ss_pred CceEEEEEccCCChHHHHHHHHHHHHHHHcCCEEEEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcCCCHH
Confidence 4789999999887778899999999999999888765666666654322 2 26999999877644
No 20
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=52.06 E-value=9.7 Score=36.13 Aligned_cols=66 Identities=15% Similarity=0.112 Sum_probs=47.7
Q ss_pred HhcCCeEEEEEc----cccccCcHHHHHHHHHHHHHcCCcEEEEEcCCCC-HHHH-cCC--CCCcEEEEecCCC
Q 011028 273 AKDANIIGVLVG----TLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPN-PAKL-ANF--PECDVFINVSCAQ 338 (495)
Q Consensus 273 ar~A~~~GIlvg----Tl~~q~~~~~i~~L~~li~~~GKk~y~~~vgkln-~aKL-aNF--~eID~fV~vaCPr 338 (495)
.+..++||+|+. .+.-..+..+++.+++.++++|....++..+... ...+ ..+ ..+|.+|+.+...
T Consensus 3 ~~~s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~ 76 (294)
T 3qk7_A 3 LGRTDAIALAYPSRPRVLNNSTFLEMISWIGIELGKRGLDLLLIPDEPGEKYQSLIHLVETRRVDALIVAHTQP 76 (294)
T ss_dssp --CCCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCCHHHHHHHHHTCCSEEEECSCCS
T ss_pred CCccceEEEEecCCCccccChhHHHHHHHHHHHHHHCCCEEEEEeCCChhhHHHHHHHHHcCCCCEEEEeCCCC
Confidence 356789999998 6766677899999999999999998887776421 1112 112 3699999987754
No 21
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=51.93 E-value=30 Score=31.12 Aligned_cols=77 Identities=21% Similarity=0.333 Sum_probs=58.2
Q ss_pred HhcCCeEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcC-CCCHHHHcCC------CCCcEEEEecCCCcccc--c
Q 011028 273 AKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMG-KPNPAKLANF------PECDVFINVSCAQTALL--D 343 (495)
Q Consensus 273 ar~A~~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vg-kln~aKLaNF------~eID~fV~vaCPr~si~--d 343 (495)
|+....+|||.|+ ..-+.+.+...+.|++-|-.+-+-+++ +=+|++|..| .++++||.+|=-...+- -
T Consensus 3 ~m~~~~V~IimgS---~SD~~v~~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpgvv 79 (169)
T 3trh_A 3 AMNKIFVAILMGS---DSDLSTMETAFTELKSLGIPFEAHILSAHRTPKETVEFVENADNRGCAVFIAAAGLAAHLAGTI 79 (169)
T ss_dssp ---CCEEEEEESC---GGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHHHTTEEEEEEEECSSCCHHHHH
T ss_pred CCCCCcEEEEECc---HHhHHHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHHHH
Confidence 4556789999986 456888999999999999998776666 6789999888 46898888887777664 2
Q ss_pred ccCCCCccc
Q 011028 344 SKEFLAPVI 352 (495)
Q Consensus 344 ~~~f~kPVi 352 (495)
...-.+|||
T Consensus 80 A~~t~~PVI 88 (169)
T 3trh_A 80 AAHTLKPVI 88 (169)
T ss_dssp HHTCSSCEE
T ss_pred HhcCCCCEE
Confidence 334567876
No 22
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=51.30 E-value=32 Score=32.25 Aligned_cols=79 Identities=11% Similarity=0.228 Sum_probs=53.1
Q ss_pred hcCCeEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHH----HcCC--CCCcEEEEecCCCcc--c-ccc
Q 011028 274 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK----LANF--PECDVFINVSCAQTA--L-LDS 344 (495)
Q Consensus 274 r~A~~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vgkln~aK----LaNF--~eID~fV~vaCPr~s--i-~d~ 344 (495)
+..++||+|+..+.-..+..+++.+++.++++|.+..++.. .-++++ +..+ ..+|.+|+.++.... + ...
T Consensus 18 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~~~ 96 (293)
T 2iks_A 18 GRTRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACS-EDQPDNEMRCIEHLLQRQVDAIIVSTSLPPEHPFYQRW 96 (293)
T ss_dssp CCCCEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEEC-TTCHHHHHHHHHHHHHTTCSEEEECCSSCTTCHHHHTT
T ss_pred CCCcEEEEEeCCCcCcHHHHHHHHHHHHHHHCCCEEEEEcC-CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHH
Confidence 45789999998877667789999999999999987665443 334443 2222 369999998765322 2 222
Q ss_pred cCCCCcccC
Q 011028 345 KEFLAPVIT 353 (495)
Q Consensus 345 ~~f~kPViT 353 (495)
.+-..|||+
T Consensus 97 ~~~~iPvV~ 105 (293)
T 2iks_A 97 ANDPFPIVA 105 (293)
T ss_dssp TTSSSCEEE
T ss_pred HhCCCCEEE
Confidence 334457764
No 23
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=51.10 E-value=10 Score=35.82 Aligned_cols=65 Identities=12% Similarity=0.157 Sum_probs=44.1
Q ss_pred HHhcCCeEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHH----cCC--CCCcEEEEecCC
Q 011028 272 KAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSCA 337 (495)
Q Consensus 272 kar~A~~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vgkln~aKL----aNF--~eID~fV~vaCP 337 (495)
+.+..++||+|+..+.-..+..+++.+++.++++|.+..++.. .-++++. ..+ ..+|.+|+.+..
T Consensus 12 ~~~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 82 (289)
T 2fep_A 12 SSKKTTTVGVIIPDISSIFYSELARGIEDIATMYKYNIILSNS-DQNMEKELHLLNTMLGKQVDGIVFMGGN 82 (289)
T ss_dssp ----CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC-TTCHHHHHHHHHHHHHTTCSEEEECCSC
T ss_pred ccCCCCeEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeC-CCCHHHHHHHHHHHHhCCCCEEEEecCC
Confidence 3456789999998877666789999999999999987655443 3344332 222 369999987753
No 24
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=50.97 E-value=28 Score=32.97 Aligned_cols=77 Identities=16% Similarity=0.187 Sum_probs=53.5
Q ss_pred CCeEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHH----cCC--CCCcEEEEecCCCcccc----ccc
Q 011028 276 ANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSCAQTALL----DSK 345 (495)
Q Consensus 276 A~~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vgkln~aKL----aNF--~eID~fV~vaCPr~si~----d~~ 345 (495)
-++||+|+..+.-..+..+++.+++.+++.|.+..++.. .-++++- .++ ..+|+.|+.+.....+. ...
T Consensus 2 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~ 80 (313)
T 3m9w_A 2 EVKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSA-NGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVVKEAK 80 (313)
T ss_dssp -CEEEEEESCCSSSTTHHHHHHHHHHHHHTSCEEEEEEC-TTCHHHHHHHHHHHHHTTCSEEEEECSSTTSCHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECC-CCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHHH
Confidence 368999999988888899999999999999988665544 4455432 222 36999999887654321 223
Q ss_pred CCCCcccC
Q 011028 346 EFLAPVIT 353 (495)
Q Consensus 346 ~f~kPViT 353 (495)
+--.|||+
T Consensus 81 ~~~iPvV~ 88 (313)
T 3m9w_A 81 QEGIKVLA 88 (313)
T ss_dssp TTTCEEEE
T ss_pred HCCCeEEE
Confidence 34556653
No 25
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=49.60 E-value=48 Score=27.18 Aligned_cols=56 Identities=16% Similarity=0.247 Sum_probs=43.7
Q ss_pred EEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHcCCCCCcEEEEecCCCc
Q 011028 279 IGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQT 339 (495)
Q Consensus 279 ~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vgkln~aKLaNF~eID~fV~vaCPr~ 339 (495)
+.|+.+|.. -+...+++.+.+.+++.|.+.-++-+.+..+++|.+ .|. |+++||--
T Consensus 2 i~iiy~S~t-GnT~~~a~~i~~~l~~~g~~v~~~~~~~~~~~~l~~---~d~-vi~g~p~y 57 (137)
T 2fz5_A 2 VEIVYWSGT-GNTEAMANEIEAAVKAAGADVESVRFEDTNVDDVAS---KDV-ILLGCPAM 57 (137)
T ss_dssp EEEEECCSS-SHHHHHHHHHHHHHHHTTCCEEEEETTSCCHHHHHT---CSE-EEEECCCB
T ss_pred EEEEEECCC-ChHHHHHHHHHHHHHhCCCeEEEEEcccCCHHHHhc---CCE-EEEEcccc
Confidence 568888875 446889999999999999998889899888888755 454 55667743
No 26
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=49.41 E-value=23 Score=33.01 Aligned_cols=60 Identities=18% Similarity=0.239 Sum_probs=46.6
Q ss_pred CeEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHH----cCC--CCCcEEEEecCC
Q 011028 277 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSCA 337 (495)
Q Consensus 277 ~~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vgkln~aKL----aNF--~eID~fV~vaCP 337 (495)
++||+|+..+.-..+..+++.+++.++++|....++... -++++. ..+ ..+|.+|+.++.
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~~vdgiIi~~~~ 81 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLSEQGYSMLLTSTN-NNPDNERRGLENLLSQHIDGLIVEPTK 81 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHHHTTCEEEEEECT-TCHHHHHHHHHHHHHTCCSEEEECCSS
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCC-CChHHHHHHHHHHHHCCCCEEEEeccc
Confidence 799999999887788899999999999999987666544 455432 222 369999998764
No 27
>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A
Probab=49.24 E-value=58 Score=31.18 Aligned_cols=81 Identities=16% Similarity=0.192 Sum_probs=55.5
Q ss_pred hcCCeEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEc---------CCCCHHHHc------CCCCCcEEEEecCCC
Q 011028 274 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVM---------GKPNPAKLA------NFPECDVFINVSCAQ 338 (495)
Q Consensus 274 r~A~~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~v---------gkln~aKLa------NF~eID~fV~vaCPr 338 (495)
..+++||||. +.. ..+-..+++.+++.|.....+.- |+++++.+. .-+++|+.|+=||=+
T Consensus 144 ~g~~rvgvlt-p~~----~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~g~~~~~~l~~~~~~l~~~gadaIvLg~CT~ 218 (273)
T 2xed_A 144 LDAQRVALVT-PYM----RPLAEKVVAYLEAEGFTISDWRALEVADNTEVGCIPGEQVMAAARSLDLSEVDALVISCAVQ 218 (273)
T ss_dssp TTCCEEEEEE-CSC----HHHHHHHHHHHHHTTCEEEEEEECCCCBHHHHHTCCHHHHHHHHHHSCCTTCSEEEEESSSS
T ss_pred cCCCeEEEEc-CCh----hhhHHHHHHHHHHCCCEEeccccCCCccchhhcccCHHHHHHHHHHHhhCCCCEEEEcCCCC
Confidence 3578999994 432 34455888899999998755432 234555442 124689988877999
Q ss_pred ccccc-----ccCCCCcccCHHHHHH
Q 011028 339 TALLD-----SKEFLAPVITPFEAML 359 (495)
Q Consensus 339 ~si~d-----~~~f~kPViTP~El~v 359 (495)
.+..+ .+++-+|||++-.+.+
T Consensus 219 l~~~~~~~~le~~lg~PVids~~a~a 244 (273)
T 2xed_A 219 MPSLPLVETAEREFGIPVLSAATAGA 244 (273)
T ss_dssp SCCTTHHHHHHHHHSSCEEEHHHHHH
T ss_pred cchHHhHHHHHHHhCCCEEcHHHHHH
Confidence 99742 3357899999988755
No 28
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=49.21 E-value=15 Score=34.62 Aligned_cols=79 Identities=18% Similarity=0.170 Sum_probs=45.8
Q ss_pred hcCCeEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHH-------HcCCCCCcEEEEecCCCc-c-cccc
Q 011028 274 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK-------LANFPECDVFINVSCAQT-A-LLDS 344 (495)
Q Consensus 274 r~A~~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vgkln~aK-------LaNF~eID~fV~vaCPr~-s-i~d~ 344 (495)
+..++||+|+..+.-..+..+++.+++.++++|.+..++....-++++ |.. ..+|.+|+.++... . +...
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgiI~~~~~~~~~~~~~l 84 (290)
T 3clk_A 6 KSSNVIAAVVSSVRTNFAQQILDGIQEEAHKNGYNLIIVYSGSADPEEQKHALLTAIE-RPVMGILLLSIALTDDNLQLL 84 (290)
T ss_dssp --CCEEEEECCCCSSSHHHHHHHHHHHHHHTTTCEEEEEC----------CHHHHHHS-SCCSEEEEESCC----CHHHH
T ss_pred ccCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHHHHh-cCCCEEEEecccCCHHHHHHH
Confidence 456899999988776677899999999999999876554122233332 222 36999998876432 1 1122
Q ss_pred cCCCCcccC
Q 011028 345 KEFLAPVIT 353 (495)
Q Consensus 345 ~~f~kPViT 353 (495)
.+.-.|+|+
T Consensus 85 ~~~~iPvV~ 93 (290)
T 3clk_A 85 QSSDVPYCF 93 (290)
T ss_dssp HCC--CEEE
T ss_pred HhCCCCEEE
Confidence 334456653
No 29
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=48.61 E-value=27 Score=29.43 Aligned_cols=57 Identities=11% Similarity=0.103 Sum_probs=42.1
Q ss_pred eEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHcCCCC-CcEEEEecCCCc
Q 011028 278 IIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPE-CDVFINVSCAQT 339 (495)
Q Consensus 278 ~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vgkln~aKLaNF~e-ID~fV~vaCPr~ 339 (495)
.+-|+.+|..+ +...+++.|.+.+++.|.+.-++-+.+.++.. +.+ .|.+| ++||--
T Consensus 2 ki~iiy~S~~G-nt~~~a~~i~~~l~~~g~~v~~~~~~~~~~~~---l~~~~d~ii-~~~p~y 59 (147)
T 1f4p_A 2 KALIVYGSTTG-NTEYTAETIARELADAGYEVDSRDAASVEAGG---LFEGFDLVL-LGCSTW 59 (147)
T ss_dssp EEEEEEECSSS-HHHHHHHHHHHHHHHHTCEEEEEEGGGCCSTT---TTTTCSEEE-EEECEE
T ss_pred eEEEEEECCcC-HHHHHHHHHHHHHHhcCCeeEEEehhhCCHHH---hcCcCCEEE-EEeCCC
Confidence 46788888864 56899999999999999988888887776544 445 67554 456643
No 30
>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1
Probab=48.00 E-value=37 Score=26.46 Aligned_cols=56 Identities=20% Similarity=0.259 Sum_probs=45.1
Q ss_pred hHHHHHHHHhCCCcEEEEeCCccchhhHHHHHHHHHHhhccCCCCCCCCCCCCCceeEEEEcCCc
Q 011028 9 IASTADFIYSRKFTRVALQFPDNLLKDSIRIVRALRAKLGSLRSSDGERGVDDKDIGLFVMADTT 73 (495)
Q Consensus 9 i~~~i~~I~~~~~krVaLQfPD~Ll~~s~~V~~~L~~~l~~~~~~~~~~~~~~~~~~v~IlaDts 73 (495)
+.++.++|++.|.|||-+-..-.-+..|...+.+|-+-+...+- .++.+-.-|||.
T Consensus 33 lnelmdyikkqgakrvrisitartkkeaekfaailikvfaelgy---------ndinvtfdgdtv 88 (106)
T 1qys_A 33 LNELMDYIKKQGAKRVRISITARTKKEAEKFAAILIKVFAELGY---------NDINVTFDGDTV 88 (106)
T ss_dssp HHHHHHHHHHHCCSEEEEEEECSSHHHHHHHHHHHHHHHHHTTC---------CEEEEEEETTEE
T ss_pred HHHHHHHHHhcCCcEEEEEEEecchhHHHHHHHHHHHHHHHhCC---------cceeEEEcCCeE
Confidence 34677899999999999999999999999999988877654331 357888888876
No 31
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=45.83 E-value=32 Score=29.97 Aligned_cols=62 Identities=16% Similarity=0.157 Sum_probs=48.3
Q ss_pred CCeEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcCCC-CHHHHc-CCCCCcEEEEecCCCc
Q 011028 276 ANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKP-NPAKLA-NFPECDVFINVSCAQT 339 (495)
Q Consensus 276 A~~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vgkl-n~aKLa-NF~eID~fV~vaCPr~ 339 (495)
.+.+.|+-+|.. -+...+++.+.+-+++.|-.+-++-+.+. .+..+. .+.+.|+ |+++||-.
T Consensus 4 ~~kv~IvY~S~~-GnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~d~-ii~Gspty 67 (159)
T 3fni_A 4 ETSIGVFYVSEY-GYSDRLAQAIINGITKTGVGVDVVDLGAAVDLQELRELVGRCTG-LVIGMSPA 67 (159)
T ss_dssp CCEEEEEECTTS-TTHHHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHTEEE-EEEECCBT
T ss_pred CCEEEEEEECCC-hHHHHHHHHHHHHHHHCCCeEEEEECcCcCCHHHHHHHHHhCCE-EEEEcCcC
Confidence 457899999885 56789999999999999999888999988 877664 3445664 56677744
No 32
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=45.42 E-value=11 Score=35.30 Aligned_cols=64 Identities=17% Similarity=0.122 Sum_probs=47.2
Q ss_pred HhcCCeEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHH----cCC--CCCcEEEEecCC
Q 011028 273 AKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSCA 337 (495)
Q Consensus 273 ar~A~~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vgkln~aKL----aNF--~eID~fV~vaCP 337 (495)
++..++||+|+..+.-..+..+++.+++.++++|.+..++..+ -++++- .++ ..+|++|+.+..
T Consensus 2 s~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~~vdgiIi~~~~ 71 (291)
T 3l49_A 2 SLEGKTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALDAG-RNDQTQVSQIQTLIAQKPDAIIEQLGN 71 (291)
T ss_dssp CCTTCEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEEECT-TCHHHHHHHHHHHHHHCCSEEEEESSC
T ss_pred CCCCcEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEcCC-CCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 3457899999998876666789999999999999887666443 454332 222 269999988775
No 33
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=44.67 E-value=33 Score=31.79 Aligned_cols=65 Identities=12% Similarity=0.168 Sum_probs=48.7
Q ss_pred HhcCCeEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHH----HcCC--CCCcEEEEecCCC
Q 011028 273 AKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK----LANF--PECDVFINVSCAQ 338 (495)
Q Consensus 273 ar~A~~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vgkln~aK----LaNF--~eID~fV~vaCPr 338 (495)
-+..++||+|+..+.-..+..+++.+++.++++|.+..++..+. ++++ +.++ ..+|.+|+.++..
T Consensus 4 ~~~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiIi~~~~~ 74 (276)
T 3jy6_A 4 TQSSKLIAVIVANIDDYFSTELFKGISSILESRGYIGVLFDANA-DIEREKTLLRAIGSRGFDGLILQSFSN 74 (276)
T ss_dssp -CCCCEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEECTT-CHHHHHHHHHHHHTTTCSEEEEESSCC
T ss_pred CCCCcEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCC-CHHHHHHHHHHHHhCCCCEEEEecCCc
Confidence 35578999999988777788999999999999998877665543 4432 2222 3799999988765
No 34
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=44.37 E-value=28 Score=32.63 Aligned_cols=65 Identities=17% Similarity=0.099 Sum_probs=48.7
Q ss_pred cCCeEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcCC-CCHHHHc----CC--CCCcEEEEecCCCc
Q 011028 275 DANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGK-PNPAKLA----NF--PECDVFINVSCAQT 339 (495)
Q Consensus 275 ~A~~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vgk-ln~aKLa----NF--~eID~fV~vaCPr~ 339 (495)
...+||+|+..+.-..+..+++.+++.++++|.+..++..+. .++++-. ++ ..+|+.|+.++...
T Consensus 4 ~~~~Igvi~~~~~~~~~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~ 75 (304)
T 3o1i_D 4 SDEKICAIYPHLKDSYWLSVNYGMVSEAEKQGVNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDPH 75 (304)
T ss_dssp -CCEEEEEESCSCSHHHHHHHHHHHHHHHHHTCEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSSTT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChh
Confidence 467999999998777788999999999999999877766654 2544322 12 26999999877655
No 35
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=41.62 E-value=37 Score=30.89 Aligned_cols=80 Identities=21% Similarity=0.343 Sum_probs=55.4
Q ss_pred HHHHhcCCeEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcC-CCCHHHHcCCC------CCcEEEEecCCCcccc
Q 011028 270 VEKAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMG-KPNPAKLANFP------ECDVFINVSCAQTALL 342 (495)
Q Consensus 270 I~kar~A~~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vg-kln~aKLaNF~------eID~fV~vaCPr~si~ 342 (495)
-+++.....+|||.|+ ..-+.+.+.....|+.-|..+-+-+++ +=+|++|..|. ++++||.+|=-...+-
T Consensus 15 ~~~~~~~~~V~IimGS---~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lp 91 (182)
T 1u11_A 15 EDKAASAPVVGIIMGS---QSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGLNVIIAGAGGAAHLP 91 (182)
T ss_dssp -----CCCSEEEEESS---GGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHH
T ss_pred HhhhcCCCEEEEEECc---HHHHHHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCchhhhH
Confidence 3455556789999986 556888999999999999998776665 67799987774 3788777776666553
Q ss_pred --cccCCCCccc
Q 011028 343 --DSKEFLAPVI 352 (495)
Q Consensus 343 --d~~~f~kPVi 352 (495)
-...-.+|||
T Consensus 92 gvvA~~t~~PVI 103 (182)
T 1u11_A 92 GMCAAWTRLPVL 103 (182)
T ss_dssp HHHHHHCSSCEE
T ss_pred HHHHhccCCCEE
Confidence 1233456665
No 36
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=41.20 E-value=29 Score=33.77 Aligned_cols=64 Identities=9% Similarity=0.216 Sum_probs=45.7
Q ss_pred hcCCeEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHc----CC--CCCcEEEEecCCC
Q 011028 274 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLA----NF--PECDVFINVSCAQ 338 (495)
Q Consensus 274 r~A~~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vgkln~aKLa----NF--~eID~fV~vaCPr 338 (495)
+..++||+|+..+.-..+..+++.+.+.++++|....++..+ -++++.. .+ ..+|.+|+.+...
T Consensus 68 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~~vdGiI~~~~~~ 137 (355)
T 3e3m_A 68 KRSGFVGLLLPSLNNLHFAQTAQSLTDVLEQGGLQLLLGYTA-YSPEREEQLVETMLRRRPEAMVLSYDGH 137 (355)
T ss_dssp ---CEEEEEESCSBCHHHHHHHHHHHHHHHHTTCEEEEEECT-TCHHHHHHHHHHHHHTCCSEEEEECSCC
T ss_pred CCCCEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCC-CChHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 345799999998877777899999999999999987665443 3444321 11 2699999976543
No 37
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=41.11 E-value=83 Score=25.52 Aligned_cols=73 Identities=14% Similarity=0.191 Sum_probs=45.7
Q ss_pred EEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHcCCCCCcEEEEecCCCccc--ccc----cCCCCcc--c
Q 011028 281 VLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQTAL--LDS----KEFLAPV--I 352 (495)
Q Consensus 281 IlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vgkln~aKLaNF~eID~fV~vaCPr~si--~d~----~~f~kPV--i 352 (495)
+++..-|.... -++++|++.+++.|...-+-..+--..... ..++|+++. -|+... .+. .++.+|| |
T Consensus 8 lvvC~~G~~TS-ll~~kl~~~~~~~gi~~~i~~~~~~~~~~~--~~~~D~Ii~--t~~l~~~~~~~~~~~~~~~~pv~~I 82 (109)
T 2l2q_A 8 LLVCGAGMSTS-MLVQRIEKYAKSKNINATIEAIAETRLSEV--VDRFDVVLL--APQSRFNKKRLEEITKPKGIPIEII 82 (109)
T ss_dssp EEESSSSCSSC-HHHHHHHHHHHHHTCSEEEEEECSTTHHHH--TTTCSEEEE--CSCCSSHHHHHHHHHHHHTCCEEEC
T ss_pred EEECCChHhHH-HHHHHHHHHHHHCCCCeEEEEecHHHHHhh--cCCCCEEEE--CCccHHHHHHHHHHhcccCCCEEEE
Confidence 66677777777 888999999999998754433333333332 357885543 355442 111 1356888 8
Q ss_pred CHHHHH
Q 011028 353 TPFEAM 358 (495)
Q Consensus 353 TP~El~ 358 (495)
+|..+.
T Consensus 83 ~~~~y~ 88 (109)
T 2l2q_A 83 NTIDYG 88 (109)
T ss_dssp CHHHHH
T ss_pred ChHHhc
Confidence 887664
No 38
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=40.97 E-value=46 Score=31.03 Aligned_cols=62 Identities=11% Similarity=0.147 Sum_probs=45.0
Q ss_pred hcCCeEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHH----cCC--CCCcEEEEecC
Q 011028 274 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSC 336 (495)
Q Consensus 274 r~A~~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vgkln~aKL----aNF--~eID~fV~vaC 336 (495)
+..++||+|+..++-..+..+++.+++.++++|.+..++.. .-++++. ..+ ..+|.+|+.++
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~vdgiI~~~~ 73 (285)
T 3c3k_A 6 AKTGMLLVMVSNIANPFCAAVVKGIEKTAEKNGYRILLCNT-ESDLARSRSCLTLLSGKMVDGVITMDA 73 (285)
T ss_dssp -CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC-TTCHHHHHHHTHHHHTTCCSEEEECCC
T ss_pred CCCCEEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeC-CCCHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 45789999998877666789999999999999988655543 3454432 222 36999998765
No 39
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=40.76 E-value=65 Score=28.76 Aligned_cols=75 Identities=15% Similarity=0.216 Sum_probs=55.9
Q ss_pred cCCeEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcC-CCCHHHHcCCC------CCcEEEEecCCCcccc--ccc
Q 011028 275 DANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMG-KPNPAKLANFP------ECDVFINVSCAQTALL--DSK 345 (495)
Q Consensus 275 ~A~~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vg-kln~aKLaNF~------eID~fV~vaCPr~si~--d~~ 345 (495)
+...+|||.|+ ..-+.+.+.....|++-|..+-+-+++ +=+|++|..|. ++++||.+|=-...+- -..
T Consensus 2 ~~~~V~Iimgs---~SD~~v~~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~ 78 (163)
T 3ors_A 2 NAMKVAVIMGS---SSDWKIMQESCNMLDYFEIPYEKQVVSAHRTPKMMVQFASEARERGINIIIAGAGGAAHLPGMVAS 78 (163)
T ss_dssp -CCCEEEEESC---GGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHH
T ss_pred CCCeEEEEECc---HHHHHHHHHHHHHHHHcCCCEEEEEECCcCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHHHHHh
Confidence 34679999986 456888999999999999998776666 67899997773 4898888887766654 123
Q ss_pred CCCCccc
Q 011028 346 EFLAPVI 352 (495)
Q Consensus 346 ~f~kPVi 352 (495)
.-..|||
T Consensus 79 ~t~~PVI 85 (163)
T 3ors_A 79 LTTLPVI 85 (163)
T ss_dssp HCSSCEE
T ss_pred ccCCCEE
Confidence 3556776
No 40
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=40.66 E-value=55 Score=30.55 Aligned_cols=65 Identities=12% Similarity=0.199 Sum_probs=45.9
Q ss_pred hcCCeEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcCCCC-HH-HHcCC--CCCcEEEEecCCCc
Q 011028 274 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPN-PA-KLANF--PECDVFINVSCAQT 339 (495)
Q Consensus 274 r~A~~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vgkln-~a-KLaNF--~eID~fV~vaCPr~ 339 (495)
+..++||+|+ .+.-..+..+++.+++.++++|....++..+.-. .. -+.++ ..+|..|+.++...
T Consensus 10 ~~~~~Igvi~-~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~ 78 (289)
T 3k9c_A 10 ASSRLLGVVF-ELQQPFHGDLVEQIYAAATRRGYDVMLSAVAPSRAEKVAVQALMRERCEAAILLGTRFD 78 (289)
T ss_dssp ---CEEEEEE-ETTCHHHHHHHHHHHHHHHHTTCEEEEEEEBTTBCHHHHHHHHTTTTEEEEEEETCCCC
T ss_pred CCCCEEEEEE-ecCCchHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHhCCCCEEEEECCCCC
Confidence 4578999999 8776777899999999999999887776655321 11 12222 36999999887543
No 41
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=40.34 E-value=63 Score=29.08 Aligned_cols=76 Identities=16% Similarity=0.278 Sum_probs=55.9
Q ss_pred hcCCeEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcC-CCCHHHHcCC------CCCcEEEEecCCCcccc--cc
Q 011028 274 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMG-KPNPAKLANF------PECDVFINVSCAQTALL--DS 344 (495)
Q Consensus 274 r~A~~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vg-kln~aKLaNF------~eID~fV~vaCPr~si~--d~ 344 (495)
..+..||||+|+ ..-+.+.+...+.|++-|-.+-+-++| +=+|++|..| .++++||.+|=-...+- -.
T Consensus 10 ~~~P~V~IimGS---~SD~~v~~~a~~~l~~~gi~~ev~V~saHR~p~~l~~~~~~a~~~g~~ViIa~AG~aahLpgvvA 86 (173)
T 4grd_A 10 HSAPLVGVLMGS---SSDWDVMKHAVAILQEFGVPYEAKVVSAHRMPDEMFDYAEKARERGLRAIIAGAGGAAHLPGMLA 86 (173)
T ss_dssp CSSCSEEEEESS---GGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHTTTTCSEEEEEEESSCCHHHHHH
T ss_pred CCCCeEEEEeCc---HhHHHHHHHHHHHHHHcCCCEEEEEEccccCHHHHHHHHHHHHhcCCeEEEEeccccccchhhhe
Confidence 346789999986 556889999999999999997666655 6678888776 36788877776666553 22
Q ss_pred cCCCCccc
Q 011028 345 KEFLAPVI 352 (495)
Q Consensus 345 ~~f~kPVi 352 (495)
..-.+|||
T Consensus 87 ~~t~~PVI 94 (173)
T 4grd_A 87 AKTTVPVL 94 (173)
T ss_dssp HHCCSCEE
T ss_pred ecCCCCEE
Confidence 34566765
No 42
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=40.06 E-value=26 Score=32.68 Aligned_cols=62 Identities=11% Similarity=0.230 Sum_probs=43.2
Q ss_pred cCCeEEEEEcc--ccccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHH----cCC--CCCcEEEEecCC
Q 011028 275 DANIIGVLVGT--LGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSCA 337 (495)
Q Consensus 275 ~A~~~GIlvgT--l~~q~~~~~i~~L~~li~~~GKk~y~~~vgkln~aKL----aNF--~eID~fV~vaCP 337 (495)
...+||+|+.. +.-..+..+++.+++.++++|.+..++. ..-++++. ..+ ..+|.+|+.+..
T Consensus 18 ~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~l~~~~vdgii~~~~~ 87 (296)
T 3brq_A 18 STQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLAD-GKHSAEEERQAIQYLLDLRCDAIMIYPRF 87 (296)
T ss_dssp -CCEEEEEECGGGCC--CHHHHHHHHHHHHHHTTCEEEEEC-CTTSHHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred CCceEEEEeCCcccCCchHHHHHHHHHHHHHHCCCEEEEEe-CCCCHHHHHHHHHHHHhcCCCEEEEecCC
Confidence 46799999987 7666778999999999999998765443 34455432 222 369999887763
No 43
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=39.90 E-value=38 Score=29.43 Aligned_cols=60 Identities=8% Similarity=-0.014 Sum_probs=46.5
Q ss_pred eEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHc-CCCCCcEEEEecCCCc
Q 011028 278 IIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLA-NFPECDVFINVSCAQT 339 (495)
Q Consensus 278 ~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vgkln~aKLa-NF~eID~fV~vaCPr~ 339 (495)
.+.|+-+|.. -+...+++.|.+.|++.|.++-++-+.+..+..+. .+.+.|. |+++||-.
T Consensus 2 kv~IvY~S~t-GnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~-ii~Gspty 62 (161)
T 3hly_A 2 SVLIGYLSDY-GYSDRLSQAIGRGLVKTGVAVEMVDLRAVDPQELIEAVSSARG-IVLGTPPS 62 (161)
T ss_dssp CEEEEECTTS-TTHHHHHHHHHHHHHHTTCCEEEEETTTCCHHHHHHHHHHCSE-EEEECCBS
T ss_pred EEEEEEECCC-hHHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhCCE-EEEEcCCc
Confidence 3678888875 46789999999999999999888999998888763 3445675 56677744
No 44
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=39.71 E-value=36 Score=31.69 Aligned_cols=66 Identities=8% Similarity=0.054 Sum_probs=45.4
Q ss_pred HhcCCeEEEEEc-cccccCcHHHHHHHHHHHHHcCCcEEEEEcCC-CC-H-HHHcCC--CCCcEEEEecCCC
Q 011028 273 AKDANIIGVLVG-TLGVAGYLHMIHQMKELITKAGKKAYTLVMGK-PN-P-AKLANF--PECDVFINVSCAQ 338 (495)
Q Consensus 273 ar~A~~~GIlvg-Tl~~q~~~~~i~~L~~li~~~GKk~y~~~vgk-ln-~-aKLaNF--~eID~fV~vaCPr 338 (495)
.+..++||+|+. ...-..+..+++.+++.++++|....++..+. .. . .-+..+ ..+|..|+.+...
T Consensus 8 ~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~ 79 (289)
T 3g85_A 8 SQSKPTIALYWSSDISVNIISRFLRGLQSKLAKQNYNYNVVICPYKTDCLHLEKGISKENSFDAAIIANISN 79 (289)
T ss_dssp ---CCEEEEEEETTSCGGGHHHHHHHHHHHHHHTTTCSEEEEEEECTTCGGGCGGGSTTTCCSEEEESSCCH
T ss_pred cCCCceEEEEeccccchHHHHHHHHHHHHHHHHcCCeEEEEecCCCchhHHHHHHHHhccCCCEEEEecCCc
Confidence 456789999998 67767778999999999999999876655431 11 1 112223 2699999987643
No 45
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=39.67 E-value=29 Score=32.55 Aligned_cols=62 Identities=10% Similarity=0.088 Sum_probs=44.7
Q ss_pred CCeEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEc-CCCCHHH----HcCC--CCCcEEEEecCC
Q 011028 276 ANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVM-GKPNPAK----LANF--PECDVFINVSCA 337 (495)
Q Consensus 276 A~~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~v-gkln~aK----LaNF--~eID~fV~vaCP 337 (495)
+++||+|+..+.-..+..+++.+++.++++|....+... ..-++++ +.++ ..+|..|+.+..
T Consensus 1 ~~~Igvi~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~ 69 (288)
T 1gud_A 1 AAEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLS 69 (288)
T ss_dssp CCEEEEEESCSSSHHHHHHHHHHHHHHHHHTCCEEEEECSSTTCHHHHHHHHHHHHTSSEEEEEECCSS
T ss_pred CcEEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 578999998887777789999999999999987655442 3444443 2222 259999987653
No 46
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=39.18 E-value=68 Score=28.68 Aligned_cols=72 Identities=17% Similarity=0.273 Sum_probs=55.7
Q ss_pred eEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcC-CCCHHHHcCC------CCCcEEEEecCCCcccc--cccCCC
Q 011028 278 IIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMG-KPNPAKLANF------PECDVFINVSCAQTALL--DSKEFL 348 (495)
Q Consensus 278 ~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vg-kln~aKLaNF------~eID~fV~vaCPr~si~--d~~~f~ 348 (495)
.+|||.|+ ..-+.+.+.....|+.-|-.+-+-+++ .=+|++|..| .++++||.+|=-...+- -...-.
T Consensus 7 ~V~IimgS---~SD~~v~~~a~~~l~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~t~ 83 (166)
T 3oow_A 7 QVGVIMGS---KSDWSTMKECCDILDNLGIGYECEVVSAHRTPDKMFDYAETAKERGLKVIIAGAGGAAHLPGMVAAKTT 83 (166)
T ss_dssp EEEEEESS---GGGHHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEECSSCCHHHHHHHTCS
T ss_pred eEEEEECc---HHhHHHHHHHHHHHHHcCCCEEEEEEcCcCCHHHHHHHHHHHHhCCCcEEEEECCcchhhHHHHHhccC
Confidence 69999986 456888999999999999988776666 6679999877 45899998887777664 233456
Q ss_pred Cccc
Q 011028 349 APVI 352 (495)
Q Consensus 349 kPVi 352 (495)
.|||
T Consensus 84 ~PVI 87 (166)
T 3oow_A 84 LPVL 87 (166)
T ss_dssp SCEE
T ss_pred CCEE
Confidence 7776
No 47
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=38.80 E-value=29 Score=32.35 Aligned_cols=61 Identities=15% Similarity=0.185 Sum_probs=43.4
Q ss_pred CeEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHH----cCC--CCCcEEEEecCCC
Q 011028 277 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSCAQ 338 (495)
Q Consensus 277 ~~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vgkln~aKL----aNF--~eID~fV~vaCPr 338 (495)
++||+|+..+.-..+..+++.+++.++++|.+..++. ..-++++. ..+ ..+|.+|+.++..
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~ 69 (290)
T 2fn9_A 3 GKMAIVISTLNNPWFVVLAETAKQRAEQLGYEATIFD-SQNDTAKESAHFDAIIAAGYDAIIFNPTDA 69 (290)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHTTCEEEEEE-CTTCHHHHHHHHHHHHHTTCSEEEECCSCT
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEeC-CCCCHHHHHHHHHHHHHcCCCEEEEecCCh
Confidence 5899999887766677899999999999998765543 34455432 222 3689998877643
No 48
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=38.39 E-value=63 Score=31.02 Aligned_cols=64 Identities=11% Similarity=0.151 Sum_probs=46.2
Q ss_pred hcCCeEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHc----CC--CCCcEEEEecCCC
Q 011028 274 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLA----NF--PECDVFINVSCAQ 338 (495)
Q Consensus 274 r~A~~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vgkln~aKLa----NF--~eID~fV~vaCPr 338 (495)
+..++||+|+..+.-..+..+++.+++.++++|....++.. .-++++.. .+ ..+|.+|+.+...
T Consensus 60 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~vdGiIi~~~~~ 129 (339)
T 3h5o_A 60 AKSRTVLVLIPSLANTVFLETLTGIETVLDAAGYQMLIGNS-HYDAGQELQLLRAYLQHRPDGVLITGLSH 129 (339)
T ss_dssp ---CEEEEEESCSTTCTTHHHHHHHHHHHHHTTCEEEEEEC-TTCHHHHHHHHHHHHTTCCSEEEEECSCC
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC-CCChHHHHHHHHHHHcCCCCEEEEeCCCC
Confidence 34579999999998888899999999999999988665443 34444321 11 3699999987543
No 49
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=38.28 E-value=68 Score=28.90 Aligned_cols=73 Identities=18% Similarity=0.234 Sum_probs=56.9
Q ss_pred CeEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcC-CCCHHHHcCC------CCCcEEEEecCCCcccc--cccCC
Q 011028 277 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMG-KPNPAKLANF------PECDVFINVSCAQTALL--DSKEF 347 (495)
Q Consensus 277 ~~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vg-kln~aKLaNF------~eID~fV~vaCPr~si~--d~~~f 347 (495)
..+|||.|+ ..-+.+.+.....|++-|..+-+-+++ +=+|++|..| .++++||.+|=-...+- -...-
T Consensus 13 ~~V~IimGS---~SD~~v~~~a~~~L~~~Gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t 89 (174)
T 3kuu_A 13 VKIAIVMGS---KSDWATMQFAADVLTTLNVPFHVEVVSAHRTPDRLFSFAEQAEANGLHVIIAGNGGAAHLPGMLAAKT 89 (174)
T ss_dssp CCEEEEESS---GGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCSEEEEEEESSCCHHHHHHHTC
T ss_pred CcEEEEECc---HHHHHHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHHHHHhcc
Confidence 369999986 456888999999999999998776666 6789999888 45898888887777664 23445
Q ss_pred CCccc
Q 011028 348 LAPVI 352 (495)
Q Consensus 348 ~kPVi 352 (495)
.+|||
T Consensus 90 ~~PVI 94 (174)
T 3kuu_A 90 LVPVL 94 (174)
T ss_dssp SSCEE
T ss_pred CCCEE
Confidence 67876
No 50
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=38.01 E-value=30 Score=32.28 Aligned_cols=65 Identities=9% Similarity=0.166 Sum_probs=45.3
Q ss_pred HHhcCCeEEEEEcc-----ccccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHH----cCC--CCCcEEEEecCC
Q 011028 272 KAKDANIIGVLVGT-----LGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSCA 337 (495)
Q Consensus 272 kar~A~~~GIlvgT-----l~~q~~~~~i~~L~~li~~~GKk~y~~~vgkln~aKL----aNF--~eID~fV~vaCP 337 (495)
+.+..++||+|+.. +.-..+..+++.+++.++++|.+..++. ..-++++. ..+ ..+|.+|+.++.
T Consensus 4 ~~~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~vdgiIi~~~~ 79 (292)
T 3k4h_A 4 ANQTTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYALYMST-GETEEEIFNGVVKMVQGRQIGGIILLYSR 79 (292)
T ss_dssp ---CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTCEEEECC-CCSHHHHHHHHHHHHHTTCCCEEEESCCB
T ss_pred ccCCCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHcCCEEEEEe-CCCCHHHHHHHHHHHHcCCCCEEEEeCCC
Confidence 34567899999998 7777788999999999999998765433 33334331 111 379999987654
No 51
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=37.83 E-value=59 Score=29.33 Aligned_cols=74 Identities=16% Similarity=0.218 Sum_probs=57.3
Q ss_pred CCeEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcC-CCCHHHHcCC------CCCcEEEEecCCCcccc--cccC
Q 011028 276 ANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMG-KPNPAKLANF------PECDVFINVSCAQTALL--DSKE 346 (495)
Q Consensus 276 A~~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vg-kln~aKLaNF------~eID~fV~vaCPr~si~--d~~~ 346 (495)
...+|||.|+ ..-+.+.+...+.|++-|-.+-+-+++ +=+|++|..| .++++||.+|=-...+- -...
T Consensus 7 ~~~V~IimgS---~SD~~v~~~a~~~L~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~ 83 (174)
T 3lp6_A 7 RPRVGVIMGS---DSDWPVMADAAAALAEFDIPAEVRVVSAHRTPEAMFSYARGAAARGLEVIIAGAGGAAHLPGMVAAA 83 (174)
T ss_dssp CCSEEEEESC---GGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHHHTCCEEEEEEESSCCHHHHHHHH
T ss_pred CCeEEEEECc---HHhHHHHHHHHHHHHHcCCCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEecCchhhhHHHHHhc
Confidence 4569999986 456888999999999999998776666 6789999998 57898888887777654 2233
Q ss_pred CCCccc
Q 011028 347 FLAPVI 352 (495)
Q Consensus 347 f~kPVi 352 (495)
-.+|||
T Consensus 84 t~~PVI 89 (174)
T 3lp6_A 84 TPLPVI 89 (174)
T ss_dssp CSSCEE
T ss_pred cCCCEE
Confidence 566776
No 52
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=36.58 E-value=71 Score=30.52 Aligned_cols=62 Identities=16% Similarity=0.210 Sum_probs=43.5
Q ss_pred hcCCeEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHH----cCC--CCCcEEEEecCC
Q 011028 274 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSCA 337 (495)
Q Consensus 274 r~A~~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vgkln~aKL----aNF--~eID~fV~vaCP 337 (495)
+...+||+|+...+-..+..+++.+++.++++|.+..++.. .-++++. ..+ ..+|.+| .+..
T Consensus 58 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~vdgiI-~~~~ 125 (330)
T 3ctp_A 58 KNSKTIGLMVPNISNPFFNQMASVIEEYAKNKGYTLFLCNT-DDDKEKEKTYLEVLQSHRVAGII-ASRS 125 (330)
T ss_dssp --CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC-TTCHHHHHHHHHHHHHTTCSEEE-EETC
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHCCCEEEEEeC-CCChHHHHHHHHHHHhCCCCEEE-ECCC
Confidence 45689999998876666789999999999999988765543 3444432 222 3699998 6653
No 53
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=36.20 E-value=18 Score=33.94 Aligned_cols=63 Identities=10% Similarity=0.058 Sum_probs=42.4
Q ss_pred HhcCCeEEEEEccccc--cCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHH---HHcC-C--CCCcEEEEecC
Q 011028 273 AKDANIIGVLVGTLGV--AGYLHMIHQMKELITKAGKKAYTLVMGKPNPA---KLAN-F--PECDVFINVSC 336 (495)
Q Consensus 273 ar~A~~~GIlvgTl~~--q~~~~~i~~L~~li~~~GKk~y~~~vgkln~a---KLaN-F--~eID~fV~vaC 336 (495)
.+..++||+|+....- ..+..+++.+++.++++|....++..+. +++ .+.+ + ..+|.+|+++.
T Consensus 5 ~~~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiIi~~~ 75 (288)
T 3gv0_A 5 TGKTNVIALVLSVDEELMGFTSQMVFGITEVLSTTQYHLVVTPHIH-AKDSMVPIRYILETGSADGVIISKI 75 (288)
T ss_dssp --CCCEEEEECBCCCCSSCHHHHHHHHHHHHHTTSSCEEEECCBSS-GGGTTHHHHHHHHHTCCSEEEEESC
T ss_pred cCCCCEEEEEecCCccccHHHHHHHHHHHHHHHHcCCEEEEecCCc-chhHHHHHHHHHHcCCccEEEEecC
Confidence 4567899999998764 5567999999999999998765554332 111 1111 2 37999998754
No 54
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=35.90 E-value=61 Score=29.97 Aligned_cols=64 Identities=14% Similarity=0.114 Sum_probs=44.8
Q ss_pred hcCCeEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHH----cCC--CCCcEEEEecCCC
Q 011028 274 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSCAQ 338 (495)
Q Consensus 274 r~A~~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vgkln~aKL----aNF--~eID~fV~vaCPr 338 (495)
+..++||+|+..+.-..+..+++.+++.++++|.+..++. ..-++++. ..+ ..+|++|+.++..
T Consensus 5 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~l~~~~vdgii~~~~~~ 74 (289)
T 1dbq_A 5 NHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGN-AWNNLEKQRAYLSMMAQKRVDGLLVMCSEY 74 (289)
T ss_dssp ---CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCEEEEEE-CTTCHHHHHHHHHHHHHTTCSEEEEECSCC
T ss_pred CCCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEEc-CCCChHHHHHHHHHHHhCCCCEEEEEeccC
Confidence 4567999999887766677899999999999998765543 34455542 222 3699999877653
No 55
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=34.80 E-value=82 Score=28.56 Aligned_cols=73 Identities=15% Similarity=0.242 Sum_probs=52.4
Q ss_pred CeEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcC-CCCHHHHcCCC------CCcEEEEecCCCcccc--cccCC
Q 011028 277 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMG-KPNPAKLANFP------ECDVFINVSCAQTALL--DSKEF 347 (495)
Q Consensus 277 ~~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vg-kln~aKLaNF~------eID~fV~vaCPr~si~--d~~~f 347 (495)
..||||+|+ +.-+.+.+...+.|++-|.++-+-+++ .=+|++|..|. ++++||..|=-...+- -...-
T Consensus 23 p~V~IimGS---~SD~~v~~~a~~~L~~~gI~~e~~V~SAHRtp~~l~~~~~~a~~~g~~ViIa~AG~aahLpGvvAa~T 99 (181)
T 4b4k_A 23 SLVGVIMGS---TSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGMVAAKT 99 (181)
T ss_dssp CSEEEEESS---GGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEECSSCCHHHHHHTTC
T ss_pred ccEEEEECC---HhHHHHHHHHHHHHHHcCCCeeEEEEccccChHHHHHHHHHHHhcCceEEEEeccccccchhhHHhcC
Confidence 469999987 456889999999999999998776666 66799887662 4566666655444443 23456
Q ss_pred CCccc
Q 011028 348 LAPVI 352 (495)
Q Consensus 348 ~kPVi 352 (495)
..|||
T Consensus 100 ~~PVI 104 (181)
T 4b4k_A 100 NLPVI 104 (181)
T ss_dssp CSCEE
T ss_pred CCCEE
Confidence 67776
No 56
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=34.26 E-value=32 Score=32.70 Aligned_cols=61 Identities=13% Similarity=0.065 Sum_probs=43.3
Q ss_pred CeEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHH----cCC--CCCcEEEEecCCC
Q 011028 277 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSCAQ 338 (495)
Q Consensus 277 ~~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vgkln~aKL----aNF--~eID~fV~vaCPr 338 (495)
.+||+|+..++- .+..+++.+++.+++.|.+..++..+.-++++. ..+ ..+|+.|+.++..
T Consensus 2 ~~Ig~i~~~~~~-~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~ 68 (313)
T 2h3h_A 2 LTIGVIGKSVHP-YWSQVEQGVKAAGKALGVDTKFFVPQKEDINAQLQMLESFIAEGVNGIAIAPSDP 68 (313)
T ss_dssp CEEEEECSCSSH-HHHHHHHHHHHHHHHHTCEEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCSST
T ss_pred eEEEEEeCCCcH-HHHHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCh
Confidence 378999988776 667899999999999998765544345565542 122 3699998876643
No 57
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=34.19 E-value=42 Score=30.89 Aligned_cols=75 Identities=12% Similarity=0.030 Sum_probs=45.5
Q ss_pred eEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHH----HHcCC--CCCcEEEEecCCCc-c-cccccCCCC
Q 011028 278 IIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPA----KLANF--PECDVFINVSCAQT-A-LLDSKEFLA 349 (495)
Q Consensus 278 ~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vgkln~a----KLaNF--~eID~fV~vaCPr~-s-i~d~~~f~k 349 (495)
+||+|+..+.-..+..+++.+++.++++|.+..++.. .-+++ .+..+ ..+|.+|+.++... . +....+-..
T Consensus 1 ~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~~~~~i 79 (276)
T 2h0a_A 1 TVSVLLPFVATEFYRRLVEGIEGVLLEQRYDLALFPI-LSLARLKRYLENTTLAYLTDGLILASYDLTERFEEGRLPTER 79 (276)
T ss_dssp CEEEEECCSCCHHHHHHHHHHHHHHGGGTCEEEECCC-CSCCCCC---------CCCSEEEEESCCCC------CCSCSS
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC-CCchhhHHHHHHHHHhCCCCEEEEecCCCCHHHHHHHhhcCC
Confidence 5899998887677789999999999999977544332 22322 22233 26999998876432 1 222233445
Q ss_pred cccC
Q 011028 350 PVIT 353 (495)
Q Consensus 350 PViT 353 (495)
|+|+
T Consensus 80 PvV~ 83 (276)
T 2h0a_A 80 PVVL 83 (276)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 7764
No 58
>2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}
Probab=33.96 E-value=1.7e+02 Score=26.44 Aligned_cols=80 Identities=9% Similarity=0.053 Sum_probs=52.6
Q ss_pred hcCCeEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcCC---------CCHHHHcC----C--C--CCcEEEEecC
Q 011028 274 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGK---------PNPAKLAN----F--P--ECDVFINVSC 336 (495)
Q Consensus 274 r~A~~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vgk---------ln~aKLaN----F--~--eID~fV~vaC 336 (495)
..+++||||. +.. ..+-...++.+++.|.......-.. ++++.+.. + + +.|+ |+++|
T Consensus 106 ~g~~rvgvlt-~~~----~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~gada-IvLgC 179 (223)
T 2dgd_A 106 LNVRKLWIGT-PYI----KERTLEEVEWWRNKGFEIVGYDGLGKIRGIDISNTPIFTIYRLVKRHLNEVLKADA-VYIAC 179 (223)
T ss_dssp TTCCEEEEEE-SSC----HHHHHHHHHHHHTTTCEEEEEEECCCCSHHHHHTCCHHHHHHHHHTTHHHHTTSSE-EEECC
T ss_pred cCCCeEEEEe-CCc----hHHHHHHHHHHHhCCcEEecccCCCCCCcchhhccCHHHHHHHHHHHhcccCCCCE-EEEeC
Confidence 4468999994 533 4445578888888998875543322 34444421 1 2 5776 45679
Q ss_pred CCccccc-----ccCCCCcccCHHHHHH
Q 011028 337 AQTALLD-----SKEFLAPVITPFEAML 359 (495)
Q Consensus 337 Pr~si~d-----~~~f~kPViTP~El~v 359 (495)
=+.++.+ .+++-+|||++-++.+
T Consensus 180 T~l~~~~~~~~l~~~~g~PVids~~~~a 207 (223)
T 2dgd_A 180 TALSTYEAVQYLHEDLDMPVVSENAAAM 207 (223)
T ss_dssp TTSCCTTHHHHHHHHHTSCEEEHHHHHH
T ss_pred CcccHHHHHHHHHHHhCCCEEEhHHHHH
Confidence 9999742 3357899999988765
No 59
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=33.83 E-value=45 Score=31.06 Aligned_cols=59 Identities=17% Similarity=0.285 Sum_probs=42.4
Q ss_pred CeEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHH----HcCC--CCCcEEEEecC
Q 011028 277 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK----LANF--PECDVFINVSC 336 (495)
Q Consensus 277 ~~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vgkln~aK----LaNF--~eID~fV~vaC 336 (495)
++||+++..+.-..+..+++.+++.++++|....+.. ..-++++ +.++ ..+|..|+.+.
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~~-~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 66 (283)
T 2ioy_A 2 KTIGLVISTLNNPFFVTLKNGAEEKAKELGYKIIVED-SQNDSSKELSNVEDLIQQKVDVLLINPV 66 (283)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEE-CTTCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred eEEEEEecCCCCHHHHHHHHHHHHHHHhcCcEEEEec-CCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 5899999887766678999999999999998865443 3444443 2222 26999988654
No 60
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=33.11 E-value=1.4e+02 Score=24.28 Aligned_cols=63 Identities=13% Similarity=0.149 Sum_probs=38.7
Q ss_pred EEEccccccCcHHHHHHHHHHHHHcCCcE--EEEEcCCCCHHHHcCCCCCcEEEEecCCCcccccccCC-CCcccC
Q 011028 281 VLVGTLGVAGYLHMIHQMKELITKAGKKA--YTLVMGKPNPAKLANFPECDVFINVSCAQTALLDSKEF-LAPVIT 353 (495)
Q Consensus 281 IlvgTl~~q~~~~~i~~L~~li~~~GKk~--y~~~vgkln~aKLaNF~eID~fV~vaCPr~si~d~~~f-~kPViT 353 (495)
+++..-|..-..-+..+|++.+++.|... ....+.++.. .+.++|+++.. |... .+| ..|++.
T Consensus 25 lvvC~sG~gTS~ll~~kl~~~~~~~gi~~~V~~~~~~~~~~----~~~~~DlIist--~~l~----~~~~~ipvi~ 90 (113)
T 1tvm_A 25 IVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEIET----YMDGVHLICTT--ARVD----RSFGDIPLVH 90 (113)
T ss_dssp EEESCSCSSHHHHHHHHHHHHHHHTTCCEEEEEECTTTTTT----STTSCSEEEES--SCCC----CCSTTCCEEC
T ss_pred EEECCCCHHHHHHHHHHHHHHHHHcCCeEEEEEecHHHHhh----ccCCCCEEEEC--Cccc----cccCCCCEEE
Confidence 45555566666778999999999999874 3333444422 23468855443 3332 245 678765
No 61
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=33.11 E-value=59 Score=31.47 Aligned_cols=62 Identities=13% Similarity=0.187 Sum_probs=43.8
Q ss_pred hcCCeEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHH----HcCC--CCCcEEEEec
Q 011028 274 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK----LANF--PECDVFINVS 335 (495)
Q Consensus 274 r~A~~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vgkln~aK----LaNF--~eID~fV~va 335 (495)
+...+||+|+..+.-..+..+++.+++.++++|....+...+.-.+++ |.++ ..+|.+|+.+
T Consensus 59 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~l~~l~~~~vdGiIi~~ 126 (349)
T 1jye_A 59 KQSLLIGVATSSLALHAPSQIVAAILSRADQLGASVVVSMVERSGVEACKTAVHNLLAQRVSGLIINY 126 (349)
T ss_dssp ---CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHHHTTTCSCEEEES
T ss_pred CCCCEEEEEeCCCCcccHHHHHHHHHHHHHHcCCEEEEEeCCCCcHHHHHHHHHHHHHCCCCEEEEec
Confidence 346799999988776667789999999999999887666555433332 2222 3699998875
No 62
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=32.67 E-value=20 Score=33.87 Aligned_cols=64 Identities=16% Similarity=0.133 Sum_probs=44.1
Q ss_pred HhcCCeEEEEE-----ccccccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHH----HcCC--CCCcEEEEecCC
Q 011028 273 AKDANIIGVLV-----GTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK----LANF--PECDVFINVSCA 337 (495)
Q Consensus 273 ar~A~~~GIlv-----gTl~~q~~~~~i~~L~~li~~~GKk~y~~~vgkln~aK----LaNF--~eID~fV~vaCP 337 (495)
.+..++||+|+ ..+.-..+..+++.+++.++++|....++..+ -++++ +..+ ..+|.+|+.+..
T Consensus 4 ~~~s~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~~vdGiI~~~~~ 78 (295)
T 3hcw_A 4 TNQTYKIGLVLKGSEEPIRLNPFYINVLLGISETCNQHGYGTQTTVSN-NMNDLMDEVYKMIKQRMVDAFILLYSK 78 (295)
T ss_dssp CCCSCEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHTTTCEEEECCCC-SHHHHHHHHHHHHHTTCCSEEEESCCC
T ss_pred CCCCcEEEEEeecCCcccccChHHHHHHHHHHHHHHHCCCEEEEEcCC-CChHHHHHHHHHHHhCCcCEEEEcCcc
Confidence 45678999999 55555667899999999999999876544332 22322 1112 369999998654
No 63
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=32.28 E-value=77 Score=29.39 Aligned_cols=66 Identities=6% Similarity=0.004 Sum_probs=48.9
Q ss_pred HhcCCeEEEEEccc-cccCcHHHHHHHHHHHHHc-CCcEEEEEc--CCCCHHHH----cCC--CCCcEEEEecCCC
Q 011028 273 AKDANIIGVLVGTL-GVAGYLHMIHQMKELITKA-GKKAYTLVM--GKPNPAKL----ANF--PECDVFINVSCAQ 338 (495)
Q Consensus 273 ar~A~~~GIlvgTl-~~q~~~~~i~~L~~li~~~-GKk~y~~~v--gkln~aKL----aNF--~eID~fV~vaCPr 338 (495)
.+...+||+|+... .-..+..+++.+++.++++ |....+... +.-++++. .++ ..+|.+|+.++..
T Consensus 5 ~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~ 80 (304)
T 3gbv_A 5 SNKKYTFACLLPKHLEGEYWTDVQKGIREAVTTYSDFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPTVP 80 (304)
T ss_dssp --CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHTGGGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCSSG
T ss_pred cCCcceEEEEecCCCCchHHHHHHHHHHHHHHHHHhCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCCCh
Confidence 34678999999998 6677789999999999999 888777664 44566542 222 3699999987753
No 64
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=31.90 E-value=34 Score=34.33 Aligned_cols=59 Identities=12% Similarity=0.059 Sum_probs=39.4
Q ss_pred HhcCCeEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHcCCC--CCcEEEE
Q 011028 273 AKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFP--ECDVFIN 333 (495)
Q Consensus 273 ar~A~~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vgkln~aKLaNF~--eID~fV~ 333 (495)
.+..++||+|+. ..-..+..+++.+++.++++|....++....- .+.+..+. .+|..|+
T Consensus 22 ~~~s~~Igvv~~-~~~~f~~~l~~gi~~~a~~~g~~~~i~~~~~~-~~~i~~l~~~~vDGiIi 82 (412)
T 4fe7_A 22 FTKRHRITLLFN-ANKAYDRQVVEGVGEYLQASQSEWDIFIEEDF-RARIDKIKDWLGDGVIA 82 (412)
T ss_dssp CCCCEEEEEECC-TTSHHHHHHHHHHHHHHHHHTCCEEEEECC-C-C--------CCCSEEEE
T ss_pred CCCCceEEEEeC-CcchhhHHHHHHHHHHHHhcCCCeEEEecCCc-cchhhhHhcCCCCEEEE
Confidence 345689999995 55455569999999999999998777665432 22234442 5999987
No 65
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=31.68 E-value=40 Score=31.04 Aligned_cols=62 Identities=15% Similarity=0.172 Sum_probs=43.8
Q ss_pred cCCeEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHH----HcCC--CCCcEEEEecCC
Q 011028 275 DANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK----LANF--PECDVFINVSCA 337 (495)
Q Consensus 275 ~A~~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vgkln~aK----LaNF--~eID~fV~vaCP 337 (495)
..++||+|+..+.-..+..+++.+++.++++|.+..++..+ -++++ +..+ ..+|.+|+.++.
T Consensus 2 ~s~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~~vdgii~~~~~ 69 (275)
T 3d8u_A 2 NAYSIALIIPSLFEKACAHFLPSFQQALNKAGYQLLLGYSD-YSIEQEEKLLSTFLESRPAGVVLFGSE 69 (275)
T ss_dssp --CEEEEEESCSSCHHHHHHHHHHHHHHHHTSCEECCEECT-TCHHHHHHHHHHHHTSCCCCEEEESSC
T ss_pred CceEEEEEeCCCccccHHHHHHHHHHHHHHCCCEEEEEcCC-CCHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 35789999988776677899999999999999876555433 34433 2222 369999988764
No 66
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=30.55 E-value=68 Score=30.85 Aligned_cols=61 Identities=11% Similarity=0.141 Sum_probs=45.6
Q ss_pred CCeEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHc----CC--CCCcEEEEecCC
Q 011028 276 ANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLA----NF--PECDVFINVSCA 337 (495)
Q Consensus 276 A~~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vgkln~aKLa----NF--~eID~fV~vaCP 337 (495)
.++||+|+..+.-..+..+++.+++.++++|....+... .-++++.. ++ ..+|.+|+.+..
T Consensus 68 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~~~~~~~~~~i~~l~~~~vdGiIi~~~~ 134 (344)
T 3kjx_A 68 VNLVAVIIPSLSNMVFPEVLTGINQVLEDTELQPVVGVT-DYLPEKEEKVLYEMLSWRPSGVIIAGLE 134 (344)
T ss_dssp CSEEEEEESCSSSSSHHHHHHHHHHHHTSSSSEEEEEEC-TTCHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHHHHHHCCCEEEEEeC-CCCHHHHHHHHHHHHhCCCCEEEEECCC
Confidence 578999999988778889999999999999988755443 33555422 11 269999997654
No 67
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=30.30 E-value=56 Score=30.43 Aligned_cols=62 Identities=10% Similarity=-0.071 Sum_probs=43.0
Q ss_pred cCCeEEEEEcc-c---cccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHH----HHcCC--CCCcEEEEecCC
Q 011028 275 DANIIGVLVGT-L---GVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPA----KLANF--PECDVFINVSCA 337 (495)
Q Consensus 275 ~A~~~GIlvgT-l---~~q~~~~~i~~L~~li~~~GKk~y~~~vgkln~a----KLaNF--~eID~fV~vaCP 337 (495)
..++||+|+.. + .-..+..+++.+++.++++|.+..++.. .-+++ -+..+ ..+|.+|+.+..
T Consensus 3 ~s~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 74 (287)
T 3bbl_A 3 LSFMIGYSWTQTEPGQVNHILDQFLSSMVREAGAVNYFVLPFPF-SEDRSQIDIYRDLIRSGNVDGFVLSSIN 74 (287)
T ss_dssp CCCEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHTTCEEEECCC-CSSTTCCHHHHHHHHTTCCSEEEECSCC
T ss_pred ceeEEEEEecccccccCChhHHHHHHHHHHHHHHcCCEEEEEeC-CCchHHHHHHHHHHHcCCCCEEEEeecC
Confidence 46799999988 7 6667789999999999999977544322 22221 12222 369999987754
No 68
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=30.09 E-value=87 Score=27.78 Aligned_cols=73 Identities=10% Similarity=0.142 Sum_probs=56.1
Q ss_pred CeEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcC-CCCHHHHcCCC-------CCcEEEEecCCCcccc--cccC
Q 011028 277 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMG-KPNPAKLANFP-------ECDVFINVSCAQTALL--DSKE 346 (495)
Q Consensus 277 ~~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vg-kln~aKLaNF~-------eID~fV~vaCPr~si~--d~~~ 346 (495)
..+|||.|+ ..-+.+.+.....+++-|-.+-+-+++ +=+|++|..|. ++++||.+|=-...+- -...
T Consensus 3 ~~V~Iimgs---~SD~~v~~~a~~~l~~~gi~~ev~V~saHR~p~~~~~~~~~a~~~~~~~ViIa~AG~aa~LpgvvA~~ 79 (159)
T 3rg8_A 3 PLVIILMGS---SSDMGHAEKIASELKTFGIEYAIRIGSAHKTAEHVVSMLKEYEALDRPKLYITIAGRSNALSGFVDGF 79 (159)
T ss_dssp CEEEEEESS---GGGHHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHHHTSCSCEEEEEECCSSCCHHHHHHHH
T ss_pred CeEEEEECc---HHHHHHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHhhhcCCCcEEEEECCchhhhHHHHHhc
Confidence 368999976 456888999999999999998776666 67899998883 5888888887777664 2334
Q ss_pred CCCccc
Q 011028 347 FLAPVI 352 (495)
Q Consensus 347 f~kPVi 352 (495)
-.+|||
T Consensus 80 t~~PVI 85 (159)
T 3rg8_A 80 VKGATI 85 (159)
T ss_dssp SSSCEE
T ss_pred cCCCEE
Confidence 567776
No 69
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=29.89 E-value=1.3e+02 Score=28.73 Aligned_cols=63 Identities=14% Similarity=0.125 Sum_probs=46.7
Q ss_pred hcCCeEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHH----cCC--CCCcEEEEecCC
Q 011028 274 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSCA 337 (495)
Q Consensus 274 r~A~~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vgkln~aKL----aNF--~eID~fV~vaCP 337 (495)
+..++||+|+....-..+..+++.+++.++++|.+..++ ...-++++. ..+ ..+|.+|+.+..
T Consensus 56 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~-~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 124 (340)
T 1qpz_A 56 NHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILG-NAWNNLEKQRAYLSMMAQKRVDGLLVMCSE 124 (340)
T ss_dssp TCCSEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEE-ECTTCHHHHHHHHHHHHHTTCSEEEECCSC
T ss_pred CCCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEE-eCCCCHHHHHHHHHHHHcCCCCEEEEeCCC
Confidence 567899999988776667899999999999999876554 334455542 222 369999987664
No 70
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=29.74 E-value=1.2e+02 Score=27.45 Aligned_cols=74 Identities=18% Similarity=0.306 Sum_probs=55.0
Q ss_pred CCeEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcC-CCCHHHHcCC------CCCcEEEEecCCCcccc--cccC
Q 011028 276 ANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMG-KPNPAKLANF------PECDVFINVSCAQTALL--DSKE 346 (495)
Q Consensus 276 A~~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vg-kln~aKLaNF------~eID~fV~vaCPr~si~--d~~~ 346 (495)
...+|||.|+ ..-+++.+.....|++-|-.+-+-+++ .=+|++|..| .++++||.+|=-...+- -...
T Consensus 13 ~~~V~IimGS---~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~ 89 (183)
T 1o4v_A 13 VPRVGIIMGS---DSDLPVMKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVIIAGAGGAAHLPGMVASI 89 (183)
T ss_dssp -CEEEEEESC---GGGHHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHHH
T ss_pred CCeEEEEecc---HHHHHHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCcccccHHHHHhc
Confidence 5689999986 556888999999999999998776665 6679999887 34888887776666553 2333
Q ss_pred CCCccc
Q 011028 347 FLAPVI 352 (495)
Q Consensus 347 f~kPVi 352 (495)
-.+|||
T Consensus 90 t~~PVI 95 (183)
T 1o4v_A 90 THLPVI 95 (183)
T ss_dssp CSSCEE
T ss_pred cCCCEE
Confidence 566775
No 71
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=29.70 E-value=29 Score=33.21 Aligned_cols=64 Identities=17% Similarity=0.117 Sum_probs=43.1
Q ss_pred CCeEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHH----HcCC--CCCcEEEEecCCCc
Q 011028 276 ANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK----LANF--PECDVFINVSCAQT 339 (495)
Q Consensus 276 A~~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vgkln~aK----LaNF--~eID~fV~vaCPr~ 339 (495)
+++||+++.+++-..+..+++.+++.+++.|.+..+.....-++++ +.++ ..+|+.|+.+....
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~d~~~q~~~i~~li~~~vdgiii~~~~~~ 72 (316)
T 1tjy_A 3 AERIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPD 72 (316)
T ss_dssp CCEEEEECSSSSSHHHHHHHHHHHHHHHHHTCEEEECCCSSCCHHHHHHHHHHHHHTTCSEEEECCSSSS
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHH
Confidence 4789999988776666788889999999999654332224555543 2222 36899888766443
No 72
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=29.52 E-value=1.5e+02 Score=28.45 Aligned_cols=42 Identities=10% Similarity=0.003 Sum_probs=24.1
Q ss_pred CeEEEEEccccccCc-HHHHHHHHHHHHHcCCcEEEEEcCCCC
Q 011028 277 NIIGVLVGTLGVAGY-LHMIHQMKELITKAGKKAYTLVMGKPN 318 (495)
Q Consensus 277 ~~~GIlvgTl~~q~~-~~~i~~L~~li~~~GKk~y~~~vgkln 318 (495)
+.+.+|++..++++. ..+.+.++..|+++|..+-++......
T Consensus 9 ~~~~vi~Np~sG~~~~~~~~~~i~~~l~~~~~~~~~~~t~~~~ 51 (304)
T 3s40_A 9 EKVLLIVNPKAGQGDLHTNLTKIVPPLAAAFPDLHILHTKEQG 51 (304)
T ss_dssp SSEEEEECTTCSSSCHHHHHHHHHHHHHHHCSEEEEEECCSTT
T ss_pred CEEEEEECcccCCCchHHHHHHHHHHHHHcCCeEEEEEccCcc
Confidence 456666666665554 355566666666666655555444444
No 73
>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold, swapped-dimer, HYDR; HET: BTB; 1.60A {Mycobacterium tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A
Probab=29.18 E-value=62 Score=30.77 Aligned_cols=39 Identities=18% Similarity=0.253 Sum_probs=27.9
Q ss_pred CceeEEEEcCCccccC----------------ccchhhhcccCCcEEEEecCCCC
Q 011028 62 KDIGLFVMADTTYGSC----------------CVDEVGASHVDADCVIHYGHTCL 100 (495)
Q Consensus 62 ~~~~v~IlaDtsYGsC----------------CVDevaA~hv~aD~iVHyGhsCl 100 (495)
...++.+++|+=+++- .++.+...+.++|+|||-|+-+.
T Consensus 24 ~~~ri~~iSD~H~~~~~~~~~~~~~~~~~l~~~l~~i~~~~~~~d~vi~~GDl~~ 78 (330)
T 3ib7_A 24 PDYVLLHISDTHLIGGDRRLYGAVDADDRLGELLEQLNQSGLRPDAIVFTGDLAD 78 (330)
T ss_dssp CSEEEEEECCCCBCSSSCCBTTTBCHHHHHHHHHHHHHHHTCCCSEEEECSCCBT
T ss_pred CCeEEEEEeCCccCCCCcccccccCHHHHHHHHHHHHHhcCCCCCEEEECCCCCC
Confidence 4689999999988643 23333333468999999999654
No 74
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=28.99 E-value=72 Score=29.37 Aligned_cols=59 Identities=19% Similarity=0.281 Sum_probs=43.0
Q ss_pred CeEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHH----HcCC--CCCcEEEEecC
Q 011028 277 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK----LANF--PECDVFINVSC 336 (495)
Q Consensus 277 ~~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vgkln~aK----LaNF--~eID~fV~vaC 336 (495)
++||+++..+.-..+..+++.+++.++++|....+.. ..-++++ +.++ ..+|..|+.+.
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~~-~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 66 (271)
T 2dri_A 2 DTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLD-SQNNPAKELANVQDLTVRGTKILLINPT 66 (271)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEE-CTTCHHHHHHHHHHHTTTTEEEEEECCS
T ss_pred cEEEEEecCCCCHHHHHHHHHHHHHHHHcCcEEEEeC-CCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 6899999988777778999999999999997765543 3334433 2222 25999988654
No 75
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=28.84 E-value=48 Score=30.33 Aligned_cols=60 Identities=10% Similarity=-0.005 Sum_probs=44.5
Q ss_pred eEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEc-CCCCHHHH----cCC--CC-CcEEEEecCC
Q 011028 278 IIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVM-GKPNPAKL----ANF--PE-CDVFINVSCA 337 (495)
Q Consensus 278 ~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~v-gkln~aKL----aNF--~e-ID~fV~vaCP 337 (495)
+||+|+....-..+..+++.+++.++++|.+..++.. +.-++++- .++ .. +|.+|+.++.
T Consensus 2 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~~ 69 (276)
T 3ksm_A 2 KLLLVLKGDSNAYWRQVYLGAQKAADEAGVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPNS 69 (276)
T ss_dssp EEEEECSCSSSTHHHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCSS
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 6899998887777789999999999999988665544 34555532 222 15 9999988764
No 76
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=28.74 E-value=38 Score=31.76 Aligned_cols=62 Identities=8% Similarity=-0.027 Sum_probs=41.9
Q ss_pred CCeEEEEEccccccCcHHHHHHHHHHHHHcCC-cEEEEEcCCCCHHH----HcCC--CCCcEEEEecCCC
Q 011028 276 ANIIGVLVGTLGVAGYLHMIHQMKELITKAGK-KAYTLVMGKPNPAK----LANF--PECDVFINVSCAQ 338 (495)
Q Consensus 276 A~~~GIlvgTl~~q~~~~~i~~L~~li~~~GK-k~y~~~vgkln~aK----LaNF--~eID~fV~vaCPr 338 (495)
.++||+|+..++-..+..+++.+++.++++|. +..++. ..-++++ +.++ ..+|.+|+.++..
T Consensus 2 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~vdgiii~~~~~ 70 (309)
T 2fvy_A 2 DTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMND-SQNDQSKQNDQIDVLLAKGVKALAINLVDP 70 (309)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHHHHTCTTEEEEEEE-CTTCHHHHHHHHHHHHHTTCSEEEECCSSG
T ss_pred CcEEEEEeccCCcHHHHHHHHHHHHHHHhcCCeEEEEec-CCCCHHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 35899999887766677899999999999987 544333 3334433 2222 3689988876554
No 77
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1
Probab=28.69 E-value=86 Score=28.22 Aligned_cols=60 Identities=12% Similarity=0.117 Sum_probs=42.2
Q ss_pred HhcCCeEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHcCCCCCcEEEEecCCC
Q 011028 273 AKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQ 338 (495)
Q Consensus 273 ar~A~~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vgkln~aKLaNF~eID~fV~vaCPr 338 (495)
....+.+.|+.+|.. -+...+++.|.+.|.+.|.++-++-+.+.. ..+.+.|. |+++||=
T Consensus 18 ~~~~~kv~IvY~S~t-GnTe~~A~~ia~~l~~~g~~v~v~~l~~~~----~~l~~~d~-vi~g~~T 77 (191)
T 1bvy_F 18 NAHNTPLLVLYGSNM-GTAEGTARDLADIAMSKGFAPQVATLDSHA----GNLPREGA-VLIVTAS 77 (191)
T ss_dssp ---CCCEEEEEECSS-SHHHHHHHHHHHHHHTTTCCCEEEEGGGST----TCCCSSSE-EEEEECC
T ss_pred ccCCCeEEEEEECCC-hHHHHHHHHHHHHHHhCCCceEEeeHHHhh----hhhhhCCe-EEEEEee
Confidence 345678999999986 355789999999999899988888777642 24555564 4556663
No 78
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A*
Probab=28.59 E-value=67 Score=28.43 Aligned_cols=61 Identities=10% Similarity=0.003 Sum_probs=41.5
Q ss_pred CeEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcCCCC-----HHHHcCC-----CCCcEEEEecCC
Q 011028 277 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPN-----PAKLANF-----PECDVFINVSCA 337 (495)
Q Consensus 277 ~~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vgkln-----~aKLaNF-----~eID~fV~vaCP 337 (495)
-+||||++.-.-.=.-.+++.-++.|+++|....++.|=--. ..||+.- ..+|++|-++|-
T Consensus 13 ~ri~IV~arfn~~I~~~Ll~gA~~~l~~~G~~i~v~~VPGafEiP~aa~~la~~~~~~~~~yDavIaLG~V 83 (157)
T 2i0f_A 13 PHLLIVEARFYDDLADALLDGAKAALDEAGATYDVVTVPGALEIPATISFALDGADNGGTEYDGFVALGTV 83 (157)
T ss_dssp CEEEEEEECSSHHHHHHHHHHHHHHHHHTTCEEEEEEESSGGGHHHHHHHHHHHHHTTCCCCSEEEEEEEE
T ss_pred cEEEEEEEeCcHHHHHHHHHHHHHHHHHcCCCeEEEECCcHHHHHHHHHHHHhhccccCCCCCEEEEeeee
Confidence 579999986543333356666677888889666555553222 2566655 679999999996
No 79
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=28.49 E-value=84 Score=30.04 Aligned_cols=63 Identities=13% Similarity=0.243 Sum_probs=46.3
Q ss_pred hcCCeEEEEEcc--ccccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHH----cCC--CCCcEEEEecCC
Q 011028 274 KDANIIGVLVGT--LGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSCA 337 (495)
Q Consensus 274 r~A~~~GIlvgT--l~~q~~~~~i~~L~~li~~~GKk~y~~~vgkln~aKL----aNF--~eID~fV~vaCP 337 (495)
+..++||+|+.. +.-..+..+++.+++.++++|....++. ..-++++- .++ ..+|..|+.+..
T Consensus 59 ~~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~-~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 129 (338)
T 3dbi_A 59 KSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLAD-GKHSAEEERQAIQYLLDLRCDAIMIYPRF 129 (338)
T ss_dssp -CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHTTCEEEEEE-CTTSHHHHHHHHHHHHHTTCSEEEECCSS
T ss_pred CCCCEEEEEecCCcccChhHHHHHHHHHHHHHHCCCEEEEEe-CCCChHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 457899999998 7767778999999999999998876555 44444432 222 269999987654
No 80
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=28.24 E-value=32 Score=32.36 Aligned_cols=63 Identities=6% Similarity=-0.091 Sum_probs=44.6
Q ss_pred CeEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcCCC-CHHHH----cCC--CCCcEEEEecCCCc
Q 011028 277 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKP-NPAKL----ANF--PECDVFINVSCAQT 339 (495)
Q Consensus 277 ~~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vgkl-n~aKL----aNF--~eID~fV~vaCPr~ 339 (495)
.+||+|+..+.-..+..+++.+++.+++.|.+.-++..... ++++. .++ ..+|+.|+.+....
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~ 73 (297)
T 3rot_A 4 DKYYLITHGSQDPYWTSLFQGAKKAAEELKVDLQILAPPGANDVPKQVQFIESALATYPSGIATTIPSDT 73 (297)
T ss_dssp CEEEEECSCCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCCCSS
T ss_pred EEEEEEecCCCCchHHHHHHHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCCHH
Confidence 58999999887677789999999999999987655544332 44432 222 26999988766544
No 81
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=28.02 E-value=71 Score=30.90 Aligned_cols=62 Identities=21% Similarity=0.247 Sum_probs=43.6
Q ss_pred cCCeEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHH----cCC--CCCcEEEEecCC
Q 011028 275 DANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSCA 337 (495)
Q Consensus 275 ~A~~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vgkln~aKL----aNF--~eID~fV~vaCP 337 (495)
..++||+|+..+.-..+..+++.+++.++++|....++..+ -++++. ..+ ..+|.+|+.+..
T Consensus 65 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~~vdgiI~~~~~ 132 (348)
T 3bil_A 65 RSNTIGVIVPSLINHYFAAMVTEIQSTASKAGLATIITNSN-EDATTMSGSLEFLTSHGVDGIICVPNE 132 (348)
T ss_dssp ---CEEEEESCSSSHHHHHHHHHHHHHHHHTTCCEEEEECT-TCHHHHHHHHHHHHHTTCSCEEECCCG
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEeCC-CCHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 45789999988776667899999999999999987665543 354432 222 369999887653
No 82
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=27.84 E-value=91 Score=25.31 Aligned_cols=72 Identities=15% Similarity=0.089 Sum_probs=44.3
Q ss_pred EEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcC--CCCHHHHcCCCCCcEEEEecCCCcccc--c----ccCCCCc
Q 011028 279 IGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMG--KPNPAKLANFPECDVFINVSCAQTALL--D----SKEFLAP 350 (495)
Q Consensus 279 ~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vg--kln~aKLaNF~eID~fV~vaCPr~si~--d----~~~f~kP 350 (495)
|-++.| -|.... -+++++++.++++|..+-+..++ ++.. .+ .+.|++++. |+.... + ..++.-|
T Consensus 6 Ill~Cg-~G~sTS-~l~~k~~~~~~~~gi~~~i~a~~~~~~~~-~~---~~~Dvil~~--pqv~~~~~~~~~~~~~~~v~ 77 (106)
T 1e2b_A 6 IYLFSS-AGMSTS-LLVSKMRAQAEKYEVPVIIEAFPETLAGE-KG---QNADVVLLG--PQIAYMLPEIQRLLPNKPVE 77 (106)
T ss_dssp EEEECS-SSTTTH-HHHHHHHHHHHHSCCSEEEEEECSSSTTH-HH---HHCSEEEEC--TTSGGGHHHHHHHSSSSCCC
T ss_pred EEEECC-CchhHH-HHHHHHHHHHHHCCCCeEEEEecHHHHHh-hc---cCCCEEEEc--cchhhhHHHHHHHhcCCCce
Confidence 433443 455555 68899999999999987655443 4332 23 346755543 776532 2 1236778
Q ss_pred ccCHHHHH
Q 011028 351 VITPFEAM 358 (495)
Q Consensus 351 ViTP~El~ 358 (495)
+|.|..+.
T Consensus 78 vI~~~~yg 85 (106)
T 1e2b_A 78 VIDSLLYG 85 (106)
T ss_dssp BCCHHHHT
T ss_pred EECHHHcc
Confidence 89887764
No 83
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=27.83 E-value=81 Score=30.13 Aligned_cols=62 Identities=13% Similarity=0.221 Sum_probs=45.0
Q ss_pred hcCCeEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHH----HcCC--CCCcEEEEecC
Q 011028 274 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK----LANF--PECDVFINVSC 336 (495)
Q Consensus 274 r~A~~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vgkln~aK----LaNF--~eID~fV~vaC 336 (495)
+..++||+|+..+.-..+..+++.+++.++++|....++.. .-++++ +..+ ..+|.+|+.+.
T Consensus 61 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~vdgiI~~~~ 128 (332)
T 2o20_A 61 KRTTTVGVILPTITSTYFAAITRGVDDIASMYKYNMILANS-DNDVEKEEKVLETFLSKQVDGIVYMGS 128 (332)
T ss_dssp -CCCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEEC-TTCHHHHHHHHHHHHHTTCSEEEECSS
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEEC-CCChHHHHHHHHHHHhCCCCEEEEeCC
Confidence 45789999998877666789999999999999988655443 334433 2222 36999998775
No 84
>2i14_A Nicotinate-nucleotide pyrophosphorylase; ligand binding, phosphoribosylpyrophosphate, Zn metal ION, structural genomics, PSI; HET: PCP; 2.90A {Pyrococcus furiosus} SCOP: c.1.17.1 d.41.2.1
Probab=27.76 E-value=1.1e+02 Score=31.05 Aligned_cols=58 Identities=16% Similarity=0.226 Sum_probs=47.7
Q ss_pred CCeEEEEEccccc--cCcHHHHHHHHHHHHHcCC-cEEEEEcCCCCHHHHcCCCC-CcEEEE
Q 011028 276 ANIIGVLVGTLGV--AGYLHMIHQMKELITKAGK-KAYTLVMGKPNPAKLANFPE-CDVFIN 333 (495)
Q Consensus 276 A~~~GIlvgTl~~--q~~~~~i~~L~~li~~~GK-k~y~~~vgkln~aKLaNF~e-ID~fV~ 333 (495)
++..||-+=+.+. ..-..+++++++.+.++|. +.-+++.|.||+++++.+.+ ||+|-+
T Consensus 233 ~~~d~IrlDs~~~~~gd~~~~v~~~r~~ld~~G~~~~~I~aSggl~~~~i~~l~~~vD~~gv 294 (395)
T 2i14_A 233 KKLFAVRLDTPSSRRGNFRKIIEEVRWELKVRGYDWVKIFVSGGLDEEKIKEIVDVVDAFGV 294 (395)
T ss_dssp GGCCEEEECCCTTTCSCHHHHHHHHHHHHHHTTCCSCEEEEESSCCHHHHHTTGGGCSEEEE
T ss_pred cCCcEEEeCCCCCCcccHHHHHHHHHHHHHhCCCCceEEEEECCCCHHHHHHHHHhCCEEEe
Confidence 6788999988765 5667899999999999884 46889999999999988843 887764
No 85
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=27.37 E-value=31 Score=32.57 Aligned_cols=64 Identities=11% Similarity=0.064 Sum_probs=45.2
Q ss_pred hcCCeEEEEEcc-----ccccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHH----HcCC--CCCcEEEEecCCC
Q 011028 274 KDANIIGVLVGT-----LGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK----LANF--PECDVFINVSCAQ 338 (495)
Q Consensus 274 r~A~~~GIlvgT-----l~~q~~~~~i~~L~~li~~~GKk~y~~~vgkln~aK----LaNF--~eID~fV~vaCPr 338 (495)
+..++||+|+.. +.-..+..+++.+++.++++|.+..++.. .-++++ +..+ ..+|.+|+.++..
T Consensus 20 ~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~vdgiIi~~~~~ 94 (305)
T 3huu_A 20 NKTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGYSTRMTVS-ENSGDLYHEVKTMIQSKSVDGFILLYSLK 94 (305)
T ss_dssp -CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHHTCEEEECCC-SSHHHHHHHHHHHHHTTCCSEEEESSCBT
T ss_pred CCCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHCCCEEEEEeC-CCChHHHHHHHHHHHhCCCCEEEEeCCcC
Confidence 457899999998 76667789999999999999987654433 333333 1111 3699999987643
No 86
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=26.19 E-value=16 Score=21.10 Aligned_cols=9 Identities=44% Similarity=0.663 Sum_probs=6.8
Q ss_pred CCcccCCCC
Q 011028 457 RSYHGLEMQ 465 (495)
Q Consensus 457 Rtw~GL~~~ 465 (495)
-+|+|||..
T Consensus 8 cswrglenh 16 (23)
T 3ox7_P 8 CSWRGLENH 16 (26)
T ss_pred cccccchhh
Confidence 589999853
No 87
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=26.19 E-value=62 Score=30.15 Aligned_cols=61 Identities=8% Similarity=0.023 Sum_probs=38.6
Q ss_pred CCeEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHH----cCC--CCCcEEEEecC
Q 011028 276 ANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSC 336 (495)
Q Consensus 276 A~~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vgkln~aKL----aNF--~eID~fV~vaC 336 (495)
..+||+++...+-..+..+++.+++.+++.|.+..++....-++++. ..+ ..+|..|+.+.
T Consensus 4 ~~~Ig~i~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 70 (303)
T 3d02_A 4 EKTVVNISKVDGMPWFNRMGEGVVQAGKEFNLNASQVGPSSTDAPQQVKIIEDLIARKVDAITIVPN 70 (303)
T ss_dssp CEEEEEECSCSSCHHHHHHHHHHHHHHHHTTEEEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred ceEEEEEeccCCChHHHHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 46788888776655567788888888888885543333345555442 122 35888777654
No 88
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=25.80 E-value=86 Score=29.13 Aligned_cols=63 Identities=16% Similarity=0.197 Sum_probs=43.1
Q ss_pred hcCCeEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHH-------HHcCC--CCCcEEEEecCC
Q 011028 274 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPA-------KLANF--PECDVFINVSCA 337 (495)
Q Consensus 274 r~A~~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vgkln~a-------KLaNF--~eID~fV~vaCP 337 (495)
+..++||+|+..++-..+..+++.+++.++++|.+..++..+ -+++ .+.++ ..+|.+|+.+..
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 77 (290)
T 2rgy_A 6 QQLGIIGLFVPTFFGSYYGTILKQTDLELRAVHRHVVVATGC-GESTPREQALEAVRFLIGRDCDGVVVISHD 77 (290)
T ss_dssp --CCEEEEECSCSCSHHHHHHHHHHHHHHHHTTCEEEEECCC-SSSCHHHHHHHHHHHHHHTTCSEEEECCSS
T ss_pred CCCCeEEEEeCCCCCchHHHHHHHHHHHHHHCCCEEEEEeCC-CchhhhhhHHHHHHHHHhcCccEEEEecCC
Confidence 456799999988766667899999999999999876544332 2222 22222 269999887654
No 89
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Probab=25.18 E-value=1.2e+02 Score=29.51 Aligned_cols=76 Identities=16% Similarity=0.186 Sum_probs=48.9
Q ss_pred cchHHHHHHHHhCCCcEEEEe---CCccchhh---HHHHHHHHHHhhccCCCCCCCCCCCCCceeEEEEcCCccccCccc
Q 011028 7 YEIASTADFIYSRKFTRVALQ---FPDNLLKD---SIRIVRALRAKLGSLRSSDGERGVDDKDIGLFVMADTTYGSCCVD 80 (495)
Q Consensus 7 yei~~~i~~I~~~~~krVaLQ---fPD~Ll~~---s~~V~~~L~~~l~~~~~~~~~~~~~~~~~~v~IlaDtsYGsCCVD 80 (495)
.+++.+.+.|++.+.+-|++. -|-|...+ -..|++..++ ..++++.|-+.+ -..
T Consensus 122 ~d~~~l~~~i~~~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~------------------~~~~li~D~~~~-g~~- 181 (379)
T 3ke3_A 122 VDIETAVAKIKEDKSAIVYAPHVETSSGIILSEEYIKALSEAVHS------------------VGGLLVIDCIAS-GCV- 181 (379)
T ss_dssp CCHHHHHHHHHHHTCSEEEEESEETTTTEECCHHHHHHHHHHHHH------------------TTCEEEEECTTC-TTC-
T ss_pred CCHHHHHHHHhhcCCcEEEEEeecCCCceeCCHHHHHHHHHHHHH------------------cCCEEEEEeccc-CCc-
Confidence 567788777866566777764 45677777 5666666654 246666676654 222
Q ss_pred hhhhcccCCcEEEEecCCCCCC
Q 011028 81 EVGASHVDADCVIHYGHTCLSP 102 (495)
Q Consensus 81 evaA~hv~aD~iVHyGhsCls~ 102 (495)
....++.++|+++.=+|-++..
T Consensus 182 ~~~~~~~~~d~~~~s~~K~l~~ 203 (379)
T 3ke3_A 182 WLDMKELGIDVLISAPQKGWSS 203 (379)
T ss_dssp CCCHHHHTCSEEEECTTTTTCS
T ss_pred cccccccCCCEEEecchhhcCC
Confidence 2334456789999888887753
No 90
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=24.81 E-value=1.9e+02 Score=22.10 Aligned_cols=52 Identities=17% Similarity=0.208 Sum_probs=39.6
Q ss_pred HHHHHHHHHHh---cCCeEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcC
Q 011028 264 KRRYYLVEKAK---DANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMG 315 (495)
Q Consensus 264 ~rRy~~I~kar---~A~~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vg 315 (495)
.|-..-++||. .|+.+-|-++.-.-..-.++++.+.+++.+.|.|-.-+-|+
T Consensus 32 eralqelekalaragarnvqitisaendeqakelleliarllqklgykdinvrvn 86 (96)
T 2jvf_A 32 ERALQELEKALARAGARNVQITISAENDEQAKELLELIARLLQKLGYKDINVRVN 86 (96)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEEECSSHHHHHHHHHHHHHHHHHHTCSEEEEEEE
T ss_pred HHHHHHHHHHHHhccccceEEEEEecChHHHHHHHHHHHHHHHHhCCCceEEEEc
Confidence 33344455543 48999999988877777899999999999999997766554
No 91
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=23.93 E-value=71 Score=27.72 Aligned_cols=56 Identities=9% Similarity=0.074 Sum_probs=41.0
Q ss_pred eEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHcCCCCCcEEEEecCCC
Q 011028 278 IIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQ 338 (495)
Q Consensus 278 ~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vgkln~aKLaNF~eID~fV~vaCPr 338 (495)
.+.|+-+|.. -+...+++.|.+.+.+.|..+-++-+.+.++..|.+ .|. |+++||-
T Consensus 11 ki~I~Y~S~t-GnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~l~~---~d~-ii~g~pt 66 (167)
T 1ykg_A 11 GITIISASQT-GNARRVAEALRDDLLAAKLNVKLVNAGDYKFKQIAS---EKL-LIVVTST 66 (167)
T ss_dssp -CEEEEECSS-SHHHHHHHHHHHHHHHHTCCCEEEEGGGCCGGGGGG---CSE-EEEEEEC
T ss_pred eEEEEEECCc-hHHHHHHHHHHHHHHHCCCceEEeehhhCCHHHhcc---CCe-EEEEEcc
Confidence 5788999876 356889999999999999888788787777665544 454 4455553
No 92
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=23.74 E-value=60 Score=30.14 Aligned_cols=62 Identities=16% Similarity=0.169 Sum_probs=43.1
Q ss_pred hcCCeEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHH----cCC--CCCcEEEEecCC
Q 011028 274 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSCA 337 (495)
Q Consensus 274 r~A~~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vgkln~aKL----aNF--~eID~fV~vaCP 337 (495)
+...+||+|+.. .-..+..+++.+++.++++|.+..++.. .-++++. ..+ ..+|.+|+.++.
T Consensus 6 ~~~~~Igvi~~~-~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 73 (288)
T 2qu7_A 6 GRSNIIAFIVPD-QNPFFTEVLTEISHECQKHHLHVAVASS-EENEDKQQDLIETFVSQNVSAIILVPVK 73 (288)
T ss_dssp -CEEEEEEEESS-CCHHHHHHHHHHHHHHGGGTCEEEEEEC-TTCHHHHHHHHHHHHHTTEEEEEECCSS
T ss_pred CCCCEEEEEECC-CCchHHHHHHHHHHHHHHCCCEEEEEeC-CCCHHHHHHHHHHHHHcCccEEEEecCC
Confidence 345789999987 5555678999999999999987655443 3455432 222 368998887764
No 93
>1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus} SCOP: c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A* 1czh_A* 1d03_A*
Probab=23.69 E-value=97 Score=26.53 Aligned_cols=55 Identities=13% Similarity=0.180 Sum_probs=36.8
Q ss_pred eEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHcCCCCCcEEEEecCCC
Q 011028 278 IIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQ 338 (495)
Q Consensus 278 ~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vgkln~aKLaNF~eID~fV~vaCPr 338 (495)
.+.|+.+|..+ +...+++.|.+.+... ..+-++-+.+..+..|.+ .|. |+++||-
T Consensus 2 kilIvY~S~tG-nT~~vA~~ia~~l~~~-~~v~~~~~~~~~~~~l~~---~d~-ii~g~pt 56 (169)
T 1czn_A 2 KIGLFYGTQTG-VTQTIAESIQQEFGGE-SIVDLNDIANADASDLNA---YDY-LIIGCPT 56 (169)
T ss_dssp CEEEEECCSSS-HHHHHHHHHHHHHTST-TTEEEEEGGGCCGGGGGG---CSE-EEEECCE
T ss_pred eEEEEEECCCc-HHHHHHHHHHHHhCcc-cceEEEEhhhCCHhHHhh---CCE-EEEEecc
Confidence 57899998874 5678888888877543 346666777666655544 454 5566774
No 94
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=23.58 E-value=1.1e+02 Score=29.17 Aligned_cols=63 Identities=19% Similarity=0.231 Sum_probs=43.8
Q ss_pred hcCCeEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHH----HcCC--CCCcEEEEecCC
Q 011028 274 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK----LANF--PECDVFINVSCA 337 (495)
Q Consensus 274 r~A~~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vgkln~aK----LaNF--~eID~fV~vaCP 337 (495)
+...+||+|+..+.-..+..+++.+++.++++|....++.. .-++++ +..+ ..+|.+|+.+..
T Consensus 58 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 126 (332)
T 2hsg_A 58 KKTTTVGVIIPDISNIFYAELARGIEDIATMYKYNIILSNS-DQNQDKELHLLNNMLGKQVDGIIFMSGN 126 (332)
T ss_dssp C-CCEEEEEEC--CCSHHHHHHHHHHHHHHHHTCEEEEEEC-CSHHHHHHHHHHHTSCCSSCCEEECCSS
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEeC-CCChHHHHHHHHHHHhCCCcEEEEecCC
Confidence 35689999998877677789999999999999988665543 333332 3333 369999987754
No 95
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=23.54 E-value=89 Score=29.77 Aligned_cols=64 Identities=9% Similarity=-0.013 Sum_probs=46.0
Q ss_pred hcCCeEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHH----cCC--CC--CcEEEEecCCC
Q 011028 274 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PE--CDVFINVSCAQ 338 (495)
Q Consensus 274 r~A~~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vgkln~aKL----aNF--~e--ID~fV~vaCPr 338 (495)
+...+||+|+..++-..+..+++.+++.+++.|.+..++. ..-++++. ..+ .. +|..|+.++..
T Consensus 3 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~-~~~~~~~~~~~i~~l~~~~~~vdgiIi~~~~~ 74 (332)
T 2rjo_A 3 LGQTTLACSFRSLTNPYYTAFNKGAQSFAKSVGLPYVPLT-TEGSSEKGIADIRALLQKTGGNLVLNVDPNDS 74 (332)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHHTCCEEEEE-CTTCHHHHHHHHHHHHHHTTTCEEEEECCSSH
T ss_pred CCccEEEEEecCCCcHHHHHHHHHHHHHHHHcCCEEEEec-CCCCHHHHHHHHHHHHHCCCCCCEEEEeCCCH
Confidence 3467899999888777778999999999999998866554 34444432 222 25 99988876643
No 96
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=23.40 E-value=1.1e+02 Score=27.55 Aligned_cols=73 Identities=15% Similarity=0.242 Sum_probs=54.4
Q ss_pred CeEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcC-CCCHHHHcCCC------CCcEEEEecCCCcccc--cccCC
Q 011028 277 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMG-KPNPAKLANFP------ECDVFINVSCAQTALL--DSKEF 347 (495)
Q Consensus 277 ~~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vg-kln~aKLaNF~------eID~fV~vaCPr~si~--d~~~f 347 (495)
..+|||.|+ ..-+++.+.....|++-|-.+-+-+++ .=+|++|..|. ++++||.+|=-...+- -...-
T Consensus 12 ~~V~IimGS---~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t 88 (170)
T 1xmp_A 12 SLVGVIMGS---TSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGMVAAKT 88 (170)
T ss_dssp CSEEEEESS---GGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHTTC
T ss_pred CcEEEEECc---HHHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHHHHHhcc
Confidence 468999986 556888999999999999998776665 66789987774 3788877776666654 23445
Q ss_pred CCccc
Q 011028 348 LAPVI 352 (495)
Q Consensus 348 ~kPVi 352 (495)
.+|||
T Consensus 89 ~~PVI 93 (170)
T 1xmp_A 89 NLPVI 93 (170)
T ss_dssp CSCEE
T ss_pred CCCEE
Confidence 67776
No 97
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=23.39 E-value=1.2e+02 Score=30.03 Aligned_cols=61 Identities=11% Similarity=0.111 Sum_probs=45.9
Q ss_pred CeEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHc-CCCCCcEEEEecCCCc
Q 011028 277 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLA-NFPECDVFINVSCAQT 339 (495)
Q Consensus 277 ~~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vgkln~aKLa-NF~eID~fV~vaCPr~ 339 (495)
..+.|+.++.. .+...+++.+.+.+++.|.+.-++-+.+.++..+. .+.+.|++ ++++|.-
T Consensus 257 ~kv~iiy~S~~-GnT~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~l~~~D~i-iigsP~y 318 (414)
T 2q9u_A 257 KKVTVVLDSMY-GTTHRMALALLDGARSTGCETVLLEMTSSDITKVALHTYDSGAV-AFASPTL 318 (414)
T ss_dssp SEEEEEECCSS-SHHHHHHHHHHHHHHHTTCEEEEEEGGGCCHHHHHHHHHTCSEE-EEECCCB
T ss_pred CeEEEEEECCC-chHHHHHHHHHHHHHhCCCeEEEEEcCcCCHHHHHHHHHhCCEE-EEEcCcc
Confidence 68899999975 46789999999999999988888888888776332 34456654 5566754
No 98
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*
Probab=23.35 E-value=32 Score=37.18 Aligned_cols=61 Identities=15% Similarity=0.144 Sum_probs=47.6
Q ss_pred cCCeEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHcCCCC--CcEEEEecCC
Q 011028 275 DANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPE--CDVFINVSCA 337 (495)
Q Consensus 275 ~A~~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vgkln~aKLaNF~e--ID~fV~vaCP 337 (495)
..+.+.|+-||..| +...++++|.+.++++|.++-++-+.+.+++.|.++++ -+. |++.||
T Consensus 17 ~~~~i~I~YgS~tG-nte~~A~~la~~l~~~g~~~~v~~~~~~~~~~l~~~~~~~~~~-vi~~~s 79 (618)
T 3qe2_A 17 TGRNIIVFYGSQTG-TAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDNAL-VVFCMA 79 (618)
T ss_dssp HTCSEEEEEECSSS-HHHHHHHHHHHHGGGGTCCEEEECGGGSCGGGGGGGGGSTTCE-EEEEEE
T ss_pred cCCeEEEEEECChh-HHHHHHHHHHHHHHhCCCceEEechHHcCHHHhhhcccccCcE-EEEEcC
Confidence 45779999999863 45788999999999999999888899999988877654 344 444454
No 99
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=23.17 E-value=82 Score=29.98 Aligned_cols=51 Identities=16% Similarity=0.213 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhcCCeEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcC
Q 011028 263 LKRRYYLVEKAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMG 315 (495)
Q Consensus 263 l~rRy~~I~kar~A~~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vg 315 (495)
++.......+.+.+++|.|. | +||.|--.+.-.|-..+.++|+|+-++=.+
T Consensus 28 l~~~l~~~~~~~~~~vI~v~-~-KGGvGKTT~a~nLA~~La~~G~~VlliD~D 78 (307)
T 3end_A 28 VQVHLDEADKITGAKVFAVY-G-KGGIGKSTTSSNLSAAFSILGKRVLQIGCD 78 (307)
T ss_dssp ------------CCEEEEEE-C-STTSSHHHHHHHHHHHHHHTTCCEEEEEES
T ss_pred hhhhhccccccCCceEEEEE-C-CCCccHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 44444444567788999998 7 999999999999999999999998888665
No 100
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=23.17 E-value=80 Score=29.43 Aligned_cols=60 Identities=12% Similarity=0.101 Sum_probs=44.0
Q ss_pred CeEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHH----cCC--CCCcEEEEecCCC
Q 011028 277 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSCAQ 338 (495)
Q Consensus 277 ~~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vgkln~aKL----aNF--~eID~fV~vaCPr 338 (495)
.+||+|+.++.-..+..+++.+++.++++|.+..++.. -++++- .++ ..+|.+|+.+...
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~--~~~~~~~~~i~~l~~~~vdgiii~~~~~ 68 (306)
T 8abp_A 3 LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV--PDGEKTLNAIDSLAASGAKGFVICTPDP 68 (306)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHHHTEEEEEEEC--CSHHHHHHHHHHHHHTTCCEEEEECSCG
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCC--CCHHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 47999999888777889999999999999987655443 255542 222 2689999887643
No 101
>1hqk_A 6,7-dimethyl-8-ribityllumazine synthase; analysi stability, vitamin biosynthesis, transferase; 1.60A {Aquifex aeolicus} SCOP: c.16.1.1 PDB: 1nqu_A* 1nqv_A* 1nqw_A* 1nqx_A*
Probab=22.82 E-value=1.4e+02 Score=26.28 Aligned_cols=60 Identities=15% Similarity=0.221 Sum_probs=41.3
Q ss_pred eEEEEEccccccCcHHHHHHHHHHHHHcCCc---EEEEEc-CCCC----HHHHcCCCCCcEEEEecCC
Q 011028 278 IIGVLVGTLGVAGYLHMIHQMKELITKAGKK---AYTLVM-GKPN----PAKLANFPECDVFINVSCA 337 (495)
Q Consensus 278 ~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk---~y~~~v-gkln----~aKLaNF~eID~fV~vaCP 337 (495)
+|||+++.-...=.-.+++.-.+.|+++|-+ ..++-| |-.- ..||+.-..+|++|-++|.
T Consensus 14 ri~IV~arfn~~I~~~Ll~ga~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIalG~V 81 (154)
T 1hqk_A 14 RFGIVASRFNHALVDRLVEGAIDCIVRHGGREEDITLVRVPGSWEIPVAAGELARKEDIDAVIAIGVL 81 (154)
T ss_dssp CEEEEEECTTHHHHHHHHHHHHHHHHHTTCCGGGEEEEEESSGGGHHHHHHHHHTCTTCCEEEEEEEE
T ss_pred EEEEEEeeCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEeeee
Confidence 6999998654433336666677788888853 344434 3221 3677877789999999997
No 102
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=22.80 E-value=95 Score=27.32 Aligned_cols=57 Identities=12% Similarity=0.066 Sum_probs=44.2
Q ss_pred eEEEEEccccccCcHHHHHHHHHHHHH-cCCcEEEEEcCCCCHHHHcCCCCCcEEEEecCCCc
Q 011028 278 IIGVLVGTLGVAGYLHMIHQMKELITK-AGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQT 339 (495)
Q Consensus 278 ~~GIlvgTl~~q~~~~~i~~L~~li~~-~GKk~y~~~vgkln~aKLaNF~eID~fV~vaCPr~ 339 (495)
.+-||.++.. .+...+++.+.+.+++ .|-.+-++-+.+.+.++|.+ .|+ |++++|--
T Consensus 6 kiliiy~S~~-GnT~~~a~~i~~~l~~~~g~~v~~~~l~~~~~~~l~~---aD~-ii~gsP~y 63 (188)
T 2ark_A 6 KVLVIYDTRT-GNTKKMAELVAEGARSLEGTEVRLKHVDEATKEDVLW---ADG-LAVGSPTN 63 (188)
T ss_dssp EEEEEECCSS-SHHHHHHHHHHHHHHTSTTEEEEEEETTTCCHHHHHH---CSE-EEEEEECB
T ss_pred EEEEEEECCC-cHHHHHHHHHHHHHhhcCCCeEEEEEhhhCCHHHHHh---CCE-EEEEeCcc
Confidence 5788899854 4567899999999998 88888888899988888765 454 55567754
No 103
>2i1o_A Nicotinate phosphoribosyltransferase; ZIN ION, zinc finger M structural genomics, PSI, protein structure initiative; 2.40A {Thermoplasma acidophilum} PDB: 1ytd_A* 1yte_A* 1ytk_A
Probab=21.39 E-value=81 Score=32.13 Aligned_cols=57 Identities=11% Similarity=0.176 Sum_probs=46.9
Q ss_pred CeEEEEEccccc--cCcHHHHHHHHHHHHHcCC-cEEEEEcCCCCHHHHcCCC--CCcEEEE
Q 011028 277 NIIGVLVGTLGV--AGYLHMIHQMKELITKAGK-KAYTLVMGKPNPAKLANFP--ECDVFIN 333 (495)
Q Consensus 277 ~~~GIlvgTl~~--q~~~~~i~~L~~li~~~GK-k~y~~~vgkln~aKLaNF~--eID~fV~ 333 (495)
+..||.+=+.+. ..-..+++.+++.+.++|. +.-+++.|.||+++++.+. .+|+|-+
T Consensus 236 ~~d~IrlDs~~~~~gd~~~~v~~v~~~ld~~G~~~~~I~aSggl~~~~i~~l~~~GvD~~gv 297 (398)
T 2i1o_A 236 KVDYIRLDTPSSRRGNFEALIREVRWELALRGRSDIKIMVSGGLDENTVKKLREAGAEAFGV 297 (398)
T ss_dssp CCCEEEECCCGGGCSCHHHHHHHHHHHHHHTTCTTSEEEEESSCCHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEeCCCCCCcccHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHHHHcCCCEEEe
Confidence 778999988765 5667889999999999883 3688999999999998874 5888864
No 104
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=21.21 E-value=1.2e+02 Score=29.12 Aligned_cols=59 Identities=12% Similarity=0.103 Sum_probs=42.6
Q ss_pred CCeEEEEEccccc-cCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHH----HcCC----CCCcEEEEec
Q 011028 276 ANIIGVLVGTLGV-AGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK----LANF----PECDVFINVS 335 (495)
Q Consensus 276 A~~~GIlvgTl~~-q~~~~~i~~L~~li~~~GKk~y~~~vgkln~aK----LaNF----~eID~fV~va 335 (495)
..+||+|+..... ..+..+++.+++.+++.|.+..++. ..-++++ +.++ ..+|+.|+++
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g~~~~~~~-~~~~~~~~~~~i~~~i~~~~~vDgiIi~~ 70 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARDLGLDLRILY-AERDPQNTLQQARELFQGRDKPDYLMLVN 70 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHHHTCEEEEEE-CTTCHHHHHHHHHHHHHSSSCCSEEEEEC
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHHcCCeEEEEE-CCCCHHHHHHHHHHHHhcCCCCCEEEEeC
Confidence 4689999988765 4567899999999999998866553 4446554 2222 2789998875
No 105
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=21.08 E-value=51 Score=31.21 Aligned_cols=63 Identities=11% Similarity=0.081 Sum_probs=43.3
Q ss_pred hcCCeEEEEEccccccCcHHHHHHHHHHHHHcCC----cEEEE-EcCCCCHHHHcCC------CCCcEEEEecCC
Q 011028 274 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGK----KAYTL-VMGKPNPAKLANF------PECDVFINVSCA 337 (495)
Q Consensus 274 r~A~~~GIlvgTl~~q~~~~~i~~L~~li~~~GK----k~y~~-~vgkln~aKLaNF------~eID~fV~vaCP 337 (495)
...++||||. ++.-.-+.++++-+++.++++|. +..++ .-.+=++++..++ ..+|+.|+++-+
T Consensus 6 ~~t~~IGvi~-~~~~p~~~~~~~gi~~~l~~~Gy~~g~~v~l~~~~~~~~~~~~~~~~~~l~~~~vDgII~~~~~ 79 (302)
T 2qh8_A 6 AKTAKVAVSQ-IVEHPALDATRQGLLDGLKAKGYEEGKNLEFDYKTAQGNPAIAVQIARQFVGENPDVLVGIATP 79 (302)
T ss_dssp -CCEEEEEEE-SSCCHHHHHHHHHHHHHHHHTTCCBTTTEEEEEEECTTCHHHHHHHHHHHHHTCCSEEEEESHH
T ss_pred cCCcEEEEEE-eccChhHHHHHHHHHHHHHHcCCCCCCceEEEEecCCCCHHHHHHHHHHHHhCCCCEEEECChH
Confidence 3578999984 66666678999999999999998 54443 3445555543221 269998887643
No 106
>2lti_A Astexin1; sidechain-TO-backbone LINK, lasso peptide, antimic protein; NMR {Asticcacaulis excentricus}
Probab=20.95 E-value=30 Score=20.50 Aligned_cols=10 Identities=20% Similarity=0.424 Sum_probs=8.7
Q ss_pred ccCCCCCCCC
Q 011028 460 HGLEMQCNSS 469 (495)
Q Consensus 460 ~GL~~~~g~~ 469 (495)
||+||++|++
T Consensus 4 qgvepdigqt 13 (26)
T 2lti_A 4 QGVEPDIGQT 13 (26)
T ss_dssp SSSSCCBBTT
T ss_pred cccCCCcchh
Confidence 7999999975
No 107
>2bru_C NAD(P) transhydrogenase subunit beta; paramagnetic transhydrogenase, inner membrane, membrane, oxidoreductase, transmembrane; HET: NAD NAP; NMR {Escherichia coli}
Probab=20.63 E-value=73 Score=28.72 Aligned_cols=33 Identities=21% Similarity=0.317 Sum_probs=23.0
Q ss_pred HHHHcCCcE-EEEEcCCCCHHHHcCCCCCcEEEEecCC
Q 011028 301 LITKAGKKA-YTLVMGKPNPAKLANFPECDVFINVSCA 337 (495)
Q Consensus 301 li~~~GKk~-y~~~vgkln~aKLaNF~eID~fV~vaCP 337 (495)
||.+++-.+ -++=|.+||++ |++.|+.++++--
T Consensus 82 LLAEA~VPYd~v~EMdeIN~d----f~~tDv~lVIGAN 115 (186)
T 2bru_C 82 LLAEAKVPYDIVLEMDEINDD----FADTDTVLVIGAN 115 (186)
T ss_dssp HHHHHTCCTTTEEESCCCHHH----HHHCSEEEECBCG
T ss_pred EEEecCCCHHHHhhHHHHhcc----cccCCEEEEeccc
Confidence 333444433 25888999985 8899999888754
No 108
>3ck2_A Conserved uncharacterized protein (predicted phosphoesterase COG0622); structural genomics, predicted phosphodiesterase, PSI-2; HET: SRT; 2.30A {Streptococcus pneumoniae} SCOP: d.159.1.7
Probab=20.59 E-value=79 Score=27.49 Aligned_cols=52 Identities=29% Similarity=0.323 Sum_probs=33.5
Q ss_pred eeEEEEcCCccccCccchh--hhccc--CCcEEEEecCCCCCCCCCC--CeEEEccccCCC
Q 011028 64 IGLFVMADTTYGSCCVDEV--GASHV--DADCVIHYGHTCLSPTSTL--PAFFVFGKASIN 118 (495)
Q Consensus 64 ~~v~IlaDtsYGsCCVDev--aA~hv--~aD~iVHyGhsCls~~~~l--pviYVf~~~~id 118 (495)
.++++++|+= | +.+.. ..+.+ ++|.|||-|+-.+.....+ |+++|.|+....
T Consensus 7 m~i~~isD~H-~--~~~~~~~~~~~~~~~~d~i~~~GD~~~~~l~~l~~~~~~v~GNhD~~ 64 (176)
T 3ck2_A 7 QTIIVMSDSH-G--DSLIVEEVRDRYVGKVDAVFHNGDSELRPDSPLWEGIRVVKGNMDFY 64 (176)
T ss_dssp EEEEEECCCT-T--CHHHHHHHHHHHTTTSSEEEECSCCCSCTTCGGGTTEEECCCTTCCS
T ss_pred cEEEEEecCC-C--CHHHHHHHHHHhhcCCCEEEECCCCchHHHHhhhCCeEEecCcccch
Confidence 6899999997 3 22211 11122 7899999999654333222 899999976643
No 109
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=20.58 E-value=2.3e+02 Score=27.53 Aligned_cols=39 Identities=10% Similarity=0.009 Sum_probs=21.7
Q ss_pred eEEEEEccccccCc-HHHHHHHHHHHHHcCCcEEEEEcCC
Q 011028 278 IIGVLVGTLGVAGY-LHMIHQMKELITKAGKKAYTLVMGK 316 (495)
Q Consensus 278 ~~GIlvgTl~~q~~-~~~i~~L~~li~~~GKk~y~~~vgk 316 (495)
.++||++..++++. ..+.+.+++.|+++|..+.++....
T Consensus 26 ~i~vI~NP~sg~~~~~~~~~~i~~~L~~~g~~~~~~~t~~ 65 (337)
T 2qv7_A 26 RARIIYNPTSGKEQFKRELPDALIKLEKAGYETSAYATEK 65 (337)
T ss_dssp EEEEEECTTSTTSCHHHHHHHHHHHHHHTTEEEEEEECCS
T ss_pred eEEEEECCCCCCCchHHHHHHHHHHHHHcCCeEEEEEecC
Confidence 46666666555443 3455666666666665555444433
No 110
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=20.28 E-value=1.5e+02 Score=28.80 Aligned_cols=57 Identities=9% Similarity=-0.003 Sum_probs=34.1
Q ss_pred CeEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHH-HHc-CC--CCCcEEEEec
Q 011028 277 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPA-KLA-NF--PECDVFINVS 335 (495)
Q Consensus 277 ~~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vgkln~a-KLa-NF--~eID~fV~va 335 (495)
++++||++..++.+ ...+.+.+.++++|.++.+........+ .++ .. .+.|+.|.++
T Consensus 30 ~~~~vi~Np~sg~~--~~~~~i~~~l~~~g~~~~~~~t~~~~~~~~~~~~~~~~~~d~vvv~G 90 (332)
T 2bon_A 30 PASLLILNGKSTDN--LPLREAIMLLREEGMTIHVRVTWEKGDAARYVEEARKFGVATVIAGG 90 (332)
T ss_dssp CCEEEEECSSSTTC--HHHHHHHHHHHTTTCCEEEEECCSTTHHHHHHHHHHHHTCSEEEEEE
T ss_pred ceEEEEECCCCCCC--chHHHHHHHHHHcCCcEEEEEecCcchHHHHHHHHHhcCCCEEEEEc
Confidence 46788888777766 5667777777777877666554444322 111 11 2467666653
No 111
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=20.26 E-value=82 Score=29.57 Aligned_cols=61 Identities=11% Similarity=0.006 Sum_probs=41.4
Q ss_pred CeEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHH----cCC--CCCcEEEEecCCC
Q 011028 277 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSCAQ 338 (495)
Q Consensus 277 ~~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vgkln~aKL----aNF--~eID~fV~vaCPr 338 (495)
.+||+++.+.+-..+..+++.+++.+++.|....++. ..-++++. ..+ ..+|.+|+.++..
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~-~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~ 69 (306)
T 2vk2_A 3 LTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIAD-GQQKQENQIKAVRSFVAQGVDAIFIAPVVA 69 (306)
T ss_dssp CEEEEEECCCCSHHHHHHHHHHHHHHHHHTCEEEEEE-CTTCHHHHHHHHHHHHHHTCSEEEECCSSS
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEeC-CCCCHHHHHHHHHHHHHcCCCEEEEeCCCh
Confidence 5799999886544556788889999999998765443 33445432 222 2689998877654
Done!