Query 011031
Match_columns 495
No_of_seqs 191 out of 580
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 07:20:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011031.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011031hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4683 Uncharacterized conser 100.0 6E-98 1E-102 751.8 22.7 414 51-495 132-549 (549)
2 COG4299 Uncharacterized protei 100.0 3.8E-79 8.2E-84 597.5 23.7 360 60-495 5-371 (371)
3 PF07786 DUF1624: Protein of u 99.8 1.1E-20 2.3E-25 183.2 14.0 189 62-346 1-194 (223)
4 COG3503 Predicted membrane pro 99.6 1.6E-14 3.5E-19 145.2 13.5 259 61-427 14-296 (323)
5 PF10129 OpgC_C: OpgC protein; 98.9 2.2E-07 4.7E-12 97.5 21.7 79 62-144 1-82 (358)
6 COG2311 Predicted membrane pro 98.7 5.6E-07 1.2E-11 95.0 18.1 133 59-225 9-157 (394)
7 PF01757 Acyl_transf_3: Acyltr 98.5 3.2E-05 7E-10 74.9 21.0 54 64-117 2-61 (340)
8 PRK10835 hypothetical protein; 98.4 0.00012 2.7E-09 77.2 26.1 95 66-186 1-115 (373)
9 PF06423 GWT1: GWT1; InterPro 98.3 5.2E-06 1.1E-10 75.9 11.6 119 313-434 2-134 (136)
10 PRK03854 opgC glucans biosynth 97.5 0.053 1.2E-06 56.8 25.6 90 57-147 3-101 (375)
11 PF04235 DUF418: Protein of un 96.8 0.028 6.1E-07 52.1 13.0 92 341-434 11-107 (163)
12 COG3594 NolL Fucose 4-O-acetyl 96.0 0.45 9.8E-06 50.1 17.4 69 60-139 2-76 (343)
13 COG4645 Uncharacterized protei 95.9 0.025 5.4E-07 59.0 7.8 79 60-142 21-102 (410)
14 COG3274 Predicted O-acyltransf 93.8 2.2 4.8E-05 44.6 15.1 69 61-132 3-78 (332)
15 COG5062 Uncharacterized membra 91.4 1.7 3.6E-05 46.0 10.6 262 60-426 108-379 (429)
16 PF15345 TMEM51: Transmembrane 89.5 0.27 5.8E-06 48.9 2.8 58 350-407 9-88 (233)
17 COG1835 Predicted acyltransfer 85.8 7.9 0.00017 40.7 11.4 68 55-126 7-74 (386)
18 PRK05771 V-type ATP synthase s 53.6 31 0.00068 39.2 6.8 68 311-398 343-411 (646)
19 PF07786 DUF1624: Protein of u 43.8 70 0.0015 30.9 6.7 19 408-426 203-221 (223)
20 KOG2532 Permease of the major 33.7 4.2E+02 0.0091 29.2 11.4 124 314-450 295-425 (466)
21 PF05857 TraX: TraX protein; 29.1 4E+02 0.0086 25.8 9.4 103 65-188 2-104 (219)
22 PF13828 DUF4190: Domain of un 28.7 1E+02 0.0022 24.7 4.2 49 316-364 9-58 (62)
23 COG3619 Predicted membrane pro 27.9 74 0.0016 31.9 4.0 57 90-148 48-104 (226)
24 KOG3700 Predicted acyltransfer 24.9 1.2E+03 0.025 27.4 21.7 62 61-126 267-343 (705)
25 PF01284 MARVEL: Membrane-asso 22.8 5.1E+02 0.011 22.5 8.3 75 349-424 10-89 (144)
26 PF01770 Folate_carrier: Reduc 20.5 4.6E+02 0.01 28.6 8.6 104 316-432 288-393 (412)
No 1
>KOG4683 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=6e-98 Score=751.82 Aligned_cols=414 Identities=38% Similarity=0.677 Sum_probs=370.9
Q ss_pred hHhhhhhccccchhhhhhhhhcchheeeeEeccCCcccccccCCCCCCchhhHHHHHHHHHHHHHHHhhccccCChhHHH
Q 011031 51 QLQQLLQQKSKRVATLDAFRGLTVVLMILVDDAGGAYARIDHSPWNGCTLADFVMPFFLFIVGVAIALALKKVPKINGAV 130 (495)
Q Consensus 51 ~~~~~~~~~~~Rl~SLD~~RGlti~lMIlVn~~g~~~~~l~Ha~W~G~t~aDlVfP~FlFivGvSi~ls~~~~~~~~~~~ 130 (495)
.+..+.+..++|+.|||+|||+|+++||+||+.|+.||.++||+|||+++||+|||+|+||||+|+++|+|+..+|.+..
T Consensus 132 ~~~rsla~~r~RL~SLD~FRGltValMIlVdd~GG~~p~I~HapWnG~~LADfVmPfFLfIvGVsials~K~~s~rf~a~ 211 (549)
T KOG4683|consen 132 GEARSLATQRKRLRSLDTFRGLTVALMILVDDGGGGYPWIEHAPWNGLHLADFVMPFFLFIVGVSIALSVKSQSSRFSAT 211 (549)
T ss_pred hhhhhcCCCchhhhhhhhhcCceEEEEEEEecCCCCchhhhcCCcCCccHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHh
Confidence 35555666678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCccccCccCccceechhHHHHHHHHHHHHHHHHHhcCCCCCCCCccchhhhhhhH
Q 011031 131 KKIIFRTLKLLFWGIILQGGYSHAPDALSYGVDMKHIRWCGILQRIALVYVVVALIETLTTKRRPNVLEPRHLSIFTAYQ 210 (495)
Q Consensus 131 ~kil~Rsl~Lf~iGl~l~~~~~~~~~~~~~~~~~~~~R~~GVLqrIa~~Y~i~all~l~~~~~~~~~~~~~~~~i~~~~~ 210 (495)
||...|+.+|+++|++++++|.|.++++|++.|.+.+|++|||||+|++|+++|++.+++.+.. +++ ..
T Consensus 212 rKa~~R~cklllwgLflqGgf~h~~~nLTygidve~lR~mGILQr~~~ayLVvAi~~~~~~~~~--~~~---------~S 280 (549)
T KOG4683|consen 212 RKAKARICKLLLWGLFLQGGFLHSMSNLTYGIDVEQLRIMGILQRFGVAYLVVAILHTLCCRPI--SPQ---------RS 280 (549)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccCcccccCCccHHHHHHHHHHHHhhHHHHHHHHHhhhccCCC--ccc---------cc
Confidence 9999999999999999999999999999999999999999999999999999999998776522 111 12
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCcccc---CCCCcceeeeccCCCCCCCC-CCCHHHHHHHHhcCCCCccCCccccc
Q 011031 211 WQWIGGFIAFVIYIITTYSLYVPNWSFSEH---SDHGVKKYIVKCGMRGHLGP-ACNAVGYVDRELWGINHLYSDPVWSR 286 (495)
Q Consensus 211 ~~~~~~~~ll~~y~~l~~~~~vP~~~~~~~---~~~~~~~~~~~~g~~g~l~~-~~N~a~~iDr~vlG~~HlY~~p~~~~ 286 (495)
||-++....+..|-+..++.+||+|.+... .|+.|+.|.++||.++...+ .||+++|.||+++|++|||++|++||
T Consensus 281 ~~R~V~~~~L~~~~~~~~~~~V~~~~~~~~~~~~~~~~r~~~~~~G~~~~~~~P~CnAvGy~DrqvLGi~HiY~hP~~~r 360 (549)
T KOG4683|consen 281 WQRAVHDVCLFSGELAVLLALVATYLGLTFGLRVPGCPRGYLGPGGKHDYNAHPKCNAVGYADRQVLGIAHIYQHPTAKR 360 (549)
T ss_pred hhhhhhHHHHHHHHHHHHHHhhhhhhceecccccCCCCcccccCCcccccCCCCCccchhhhHHhhhhhHHHhcCchHHH
Confidence 455666666777777777777777765433 34457777788888888865 59999999999999999999999999
Q ss_pred cccccCCCCCCCCCCCCCCCcccCCCCCcchhhhhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHh
Q 011031 287 LEACTLSSPNSGPLREDAPSWCRAPFEPEGLLSTISAILSGTIGIHYGHVLIHFKGHSARLKHWVSMGFGLLIIAIILHF 366 (495)
Q Consensus 287 ~~~c~~~~~~~g~~~~~~~~~~~~~fDPEGlLStipai~~~llG~~aG~~L~~~~~~~~r~~~ll~~G~~llilG~ll~~ 366 (495)
+|+||.|+|++||++.|+|+||.+|||||||||+|.|++++++|+++|+++.+.+++..|+++|...+.++.++|..+++
T Consensus 361 ~k~cs~n~P~nG~l~~DAPSWCqapFdPEGilssi~avv~~llG~h~Ghiilh~k~~~sRir~wis~~~~l~llg~tL~~ 440 (549)
T KOG4683|consen 361 VKDCSINYPNNGPLPPDAPSWCQAPFDPEGILSSILAVVQVLLGAHAGHIILHHKNFQSRIRRWISLAILLGLLGGTLCG 440 (549)
T ss_pred hhhcccCCCCCCCCCCCCchhhcCCCChHHHHHHHHHHHHHHHHhhcCeEEEEccchHHHHHHHHHHHHHHHHHhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCccccccCCchhHHHHHHHHHHHHHHHHHHHHHhcCccchhhHHHHhchhHHHHHHHhhhhhHhhhhcceeecCCCcC
Q 011031 367 TNAIPINKQLYSFSYVCFTAGAAGIVFSALYVLMDVWELRTPFLFLKWIGMNAMLVFVLGAQGILAGFVNGWYYKNPDNT 446 (495)
Q Consensus 367 ~~~~PiNK~LWT~SfVL~TaG~a~llLa~~y~liDv~~~~~~~~pf~~~GmNai~iYv~s~~~i~~~~l~~~~~~~~~~~ 446 (495)
.+.+|+||+|||.||+|+|+|+|+++++.+|++||++.|++.+.||++.|||||++||++ +++..+++ |+|+.++++
T Consensus 441 ~s~~Plnk~L~slsfvCVT~~~A~Li~S~mY~~iDv~EW~~~~~P~~~~GMNAi~~YV~~--~vL~~~~~-W~~R~~~~~ 517 (549)
T KOG4683|consen 441 FSAIPLNKNLWSLSFVCVTVSLALLILSLMYYFIDVREWSWSGYPFTECGMNAIVMYVGH--SVLHKMLP-WHWRIGEMN 517 (549)
T ss_pred ccccchhHhHHHhhhhHHHHHHHHHHHHHHHHHhhHHHhhhccCChhhhccchhHHHHhH--HHHHHhcc-hhhccCCCc
Confidence 778999999999999999999999999999999999999888999999999999999999 89999886 999998887
Q ss_pred hHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHhcCceEeC
Q 011031 447 LVNWIQNHLFIHVWNSERLGTLLYVIFAEITFWGVVAGILHRLGIYWKL 495 (495)
Q Consensus 447 l~~wl~~~~~~~~~~~~~~gsLlyal~~~~~~w~lia~~L~rkkIfiKL 495 (495)
+ |++..+|++- -+++|.+|+.++|+.|||||+
T Consensus 518 ~------H~~l~~~~t~-----------~~L~W~~i~~~~~~~~~Y~~~ 549 (549)
T KOG4683|consen 518 T------HFMLLLEATW-----------NTLVWVGIALYLDAQEFYYSV 549 (549)
T ss_pred e------eEEEeeehhh-----------hhhhhhhhheeeeheeeEecC
Confidence 6 3333444322 246799999999999999986
No 2
>COG4299 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=3.8e-79 Score=597.51 Aligned_cols=360 Identities=30% Similarity=0.455 Sum_probs=313.8
Q ss_pred ccchhhhhhhhhcchheeeeEeccCC---cccccccCCCCCCchhhHHHHHHHHHHHHHHHhhccccCChhHHHHHHHHH
Q 011031 60 SKRVATLDAFRGLTVVLMILVDDAGG---AYARIDHSPWNGCTLADFVMPFFLFIVGVAIALALKKVPKINGAVKKIIFR 136 (495)
Q Consensus 60 ~~Rl~SLD~~RGlti~lMIlVn~~g~---~~~~l~Ha~W~G~t~aDlVfP~FlFivGvSi~ls~~~~~~~~~~~~kil~R 136 (495)
..|+.|||+|||+||++||+|||.|- .|+|+.||+|+|||++|+|||+|+|++|+||+||++|..+.+..-.++.||
T Consensus 5 a~RltsLDvfRGlTv~lMilVN~ag~gd~~y~qL~HA~w~G~T~tDlVFP~FLF~vG~am~Fs~sk~~~~n~~tw~~~RR 84 (371)
T COG4299 5 AFRLTSLDVFRGLTVLLMILVNNAGLGDSTYRQLSHAHWGGLTLTDLVFPWFLFCVGAAMPFSASKMNKANVTTWPLYRR 84 (371)
T ss_pred hhhhhhHHHHhhhHHHHHHhhcccccccccccccccccccCCCHHHHHHHHHHHHHhhhccccccccCccCCcchHHHHH
Confidence 37999999999999999999999873 899999999999999999999999999999999999988777777999999
Q ss_pred HHHHHHHHHHHhccCCCCCCccccCcc-CccceechhHHHHHHHHHHHHHHHHHhcCCCCCCCCccchhhhhhhHHHHHH
Q 011031 137 TLKLLFWGIILQGGYSHAPDALSYGVD-MKHIRWCGILQRIALVYVVVALIETLTTKRRPNVLEPRHLSIFTAYQWQWIG 215 (495)
Q Consensus 137 sl~Lf~iGl~l~~~~~~~~~~~~~~~~-~~~~R~~GVLqrIa~~Y~i~all~l~~~~~~~~~~~~~~~~i~~~~~~~~~~ 215 (495)
.+.+|++|.+++. |....+ |.++ .+..|.+|||||||+||+++|+....+++ ++|++.
T Consensus 85 aa~~f~Lg~Lm~~-F~~~~~---ws~~~~s~tr~mGVLQrIaL~ylfAal~v~~L~~-----------------r~q~~l 143 (371)
T COG4299 85 AAERFALGYLMGA-FVTVRD---WSVTSHSLTRGMGVLQRIALAYLFAALLVRQLRG-----------------RWQALL 143 (371)
T ss_pred HHHHHHHHHHhhh-ccccce---eeeeechhhHHHHHHHHHHHHHHHHHHHHHhcCh-----------------HHHHHH
Confidence 9999999999976 333221 2333 57899999999999999999999866654 589999
Q ss_pred HHHHHHHHHHHHHhcccCCCCccccCCCCcceeeeccCCCCCCCCCCCHHHHHHHHhcCCCCccCCccccccccccCCCC
Q 011031 216 GFIAFVIYIITTYSLYVPNWSFSEHSDHGVKKYIVKCGMRGHLGPACNAVGYVDRELWGINHLYSDPVWSRLEACTLSSP 295 (495)
Q Consensus 216 ~~~ll~~y~~l~~~~~vP~~~~~~~~~~~~~~~~~~~g~~g~l~~~~N~a~~iDr~vlG~~HlY~~p~~~~~~~c~~~~~ 295 (495)
+++++++||+.+...|+|+.| ++..+|...++|+...+.+|+|.+
T Consensus 144 aavLL~gYwl~lm~~p~P~~~---------------------l~~~Gn~g~~~d~l~i~~~hLy~~-------------- 188 (371)
T COG4299 144 AAVLLAGYWLFLMFTPHPAAP---------------------LGGIGNVGESADPLQILNDHLYSA-------------- 188 (371)
T ss_pred HHHHHHHHHHHHhhcCCCccc---------------------cccccccccccchhhhhhhhhhcc--------------
Confidence 999999999988777887643 345678899999999999999974
Q ss_pred CCCCCCCCCCCcccCCCCCcchhhhhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHhCCCcccccc
Q 011031 296 NSGPLREDAPSWCRAPFEPEGLLSTISAILSGTIGIHYGHVLIHFKGHSARLKHWVSMGFGLLIIAIILHFTNAIPINKQ 375 (495)
Q Consensus 296 ~~g~~~~~~~~~~~~~fDPEGlLStipai~~~llG~~aG~~L~~~~~~~~r~~~ll~~G~~llilG~ll~~~~~~PiNK~ 375 (495)
+ ..|||||++||+|++++++.|+++++.+++++...+...++.+.|++++++|+.|+. .+||||+
T Consensus 189 -d------------G~~dpeGLlstvPttv~VLaGylaar~l~~~p~~~ra~l~la~~Gvvl~~~G~gW~~--~fPi~Kk 253 (371)
T COG4299 189 -D------------GGFDPEGLLSTVPTTVLVLAGYLAARPLQQKPGNPRAPLLLAGLGVVLTALGYGWAG--RFPISKK 253 (371)
T ss_pred -c------------CCCCchhhhhcchHHHHHHHHHHhhhHHhhCCCCCcchHHHHHHHHHHHHhcccccc--ccccchh
Confidence 2 248999999999999999999999999998877777788899999999999999975 6999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHhcCccchhhHHHHhchhHHHHHHHhhhhhHhhhh-cceee--cCCCcChHHHHH
Q 011031 376 LYSFSYVCFTAGAAGIVFSALYVLMDVWELRTPFLFLKWIGMNAMLVFVLGAQGILAGFV-NGWYY--KNPDNTLVNWIQ 452 (495)
Q Consensus 376 LWT~SfVL~TaG~a~llLa~~y~liDv~~~~~~~~pf~~~GmNai~iYv~s~~~i~~~~l-~~~~~--~~~~~~l~~wl~ 452 (495)
|||||||++|+|++.++++.||.++|.+.-+++..||+++|.|||+.||+| .++...+ ..|.. ..++.+ ++|.+
T Consensus 254 LWTssyvl~t~G~~llllaac~~l~e~~~~kr~~~pf~i~GlNalalyvls--~L~~v~l~~~~g~getaps~~-~~w~~ 330 (371)
T COG4299 254 LWTSSYVLYTAGLGLLLLAACWVLAESPGGKRLLAPFTIPGLNALALYVLS--ILIKVWLLLDWGVGETAPSQS-IAWSL 330 (371)
T ss_pred hcCCceeehhhhHHHHHHHHHHHHHcCcccCcCcCceeecCcchhHHHHHH--HHHHHHHhhccccccccCCcc-hhHHH
Confidence 999999999999999999999999999999999999999999999999999 5655543 22221 123334 68999
Q ss_pred HHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHhcCceEeC
Q 011031 453 NHLFIHVWNSERLGTLLYVIFAEITFWGVVAGILHRLGIYWKL 495 (495)
Q Consensus 453 ~~~~~~~~~~~~~gsLlyal~~~~~~w~lia~~L~rkkIfiKL 495 (495)
.++|.+ +.+++.||++|++.+++.+| +.+++|+||+|++|+
T Consensus 331 ~n~f~s-~~g~~~Gsll~aL~yvl~~W-l~~~~MaRrg~~~Kl 371 (371)
T COG4299 331 LNMFRS-SFGPVGGSLLYALGYVLAVW-LGLAWMARRGIIWKL 371 (371)
T ss_pred HHHHHH-hcCCCCchhHHHHHHHHHHH-HHHHHHHhcceeeeC
Confidence 999987 57899999999999655555 689999999999997
No 3
>PF07786 DUF1624: Protein of unknown function (DUF1624); InterPro: IPR012429 These sequences are found in hypothetical proteins of unknown function expressed by bacterial and archaeal species. The region in question is approximately 230 residues long.
Probab=99.85 E-value=1.1e-20 Score=183.23 Aligned_cols=189 Identities=24% Similarity=0.310 Sum_probs=133.4
Q ss_pred chhhhhhhhhcchheeeeEeccCC-cccc--cccC--CCCCCchhhHHHHHHHHHHHHHHHhhccccCChhHHHHHHHHH
Q 011031 62 RVATLDAFRGLTVVLMILVDDAGG-AYAR--IDHS--PWNGCTLADFVMPFFLFIVGVAIALALKKVPKINGAVKKIIFR 136 (495)
Q Consensus 62 Rl~SLD~~RGlti~lMIlVn~~g~-~~~~--l~Ha--~W~G~t~aDlVfP~FlFivGvSi~ls~~~~~~~~~~~~kil~R 136 (495)
|+.++|++||++|++|+++|...+ .+.. -.|. .+......|+++|.|+|++|+|++++.+|+.++ ++.+||
T Consensus 1 Ri~~lD~~RGlaii~Mi~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~ap~F~fl~G~s~~l~~~~~~~~----~~~~~R 76 (223)
T PF07786_consen 1 RIPSLDALRGLAIIGMILVHFLFDLNYFGGWPQSWFGSFFWRFFRGLAAPLFLFLAGISLALSTGRRRRR----RKFLKR 76 (223)
T ss_pred CcHHHHHHHHHHHHhhhHhhCcChHhhcCccchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHhcccccch----hHHHHH
Confidence 899999999999999999999765 2211 1122 244556889999999999999999999887766 889999
Q ss_pred HHHHHHHHHHHhccCCCCCCccccCccCccceechhHHHHHHHHHHHHHHHHHhcCCCCCCCCccchhhhhhhHHHHHHH
Q 011031 137 TLKLLFWGIILQGGYSHAPDALSYGVDMKHIRWCGILQRIALVYVVVALIETLTTKRRPNVLEPRHLSIFTAYQWQWIGG 216 (495)
Q Consensus 137 sl~Lf~iGl~l~~~~~~~~~~~~~~~~~~~~R~~GVLqrIa~~Y~i~all~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 216 (495)
+++|+++|++++... +....+...++||||+||+|+++++++. ..++ +..++.+
T Consensus 77 ~~~l~~~g~~i~~~~--------~~~~~~~~i~~gIL~~ig~~~ll~~~~~-~~~~-----------------~~~~~~~ 130 (223)
T PF07786_consen 77 GLKLFLLGLLINLLT--------FFFFPEGFIYFGILQFIGLSMLLAALFL-RLPR-----------------RALLILA 130 (223)
T ss_pred HHHHHHHHHHHHHHH--------HHhcCCceeehhHHHHHHHHHHHHHHHH-hcch-----------------hHHHHHH
Confidence 999999999987641 1123355668899999999999888873 3332 2345555
Q ss_pred HHHHHHHHHHHHhcccCCCCccccCCCCcceeeeccCCCCCCCCCCCHHHHHHHHhcCCCCccCCccccccccccCCCCC
Q 011031 217 FIAFVIYIITTYSLYVPNWSFSEHSDHGVKKYIVKCGMRGHLGPACNAVGYVDRELWGINHLYSDPVWSRLEACTLSSPN 296 (495)
Q Consensus 217 ~~ll~~y~~l~~~~~vP~~~~~~~~~~~~~~~~~~~g~~g~l~~~~N~a~~iDr~vlG~~HlY~~p~~~~~~~c~~~~~~ 296 (495)
+++++.++.+... +. ++ + +...+| ++.
T Consensus 131 ~~~~~~~~~l~~~--~~-------------------------~~--~-----~~~~~~---~~~---------------- 157 (223)
T PF07786_consen 131 LLLLALSWLLSGP--VF-------------------------GP--P-----WLLWLG---LSS---------------- 157 (223)
T ss_pred HHHHHHHHHHhhh--hc-------------------------Cc--h-----HHHHhc---ccc----------------
Confidence 5555555544321 00 00 0 111222 111
Q ss_pred CCCCCCCCCCcccCCCCCcchhhhhHHHHHHHHHHHHHHHHhcccchhHH
Q 011031 297 SGPLREDAPSWCRAPFEPEGLLSTISAILSGTIGIHYGHVLIHFKGHSAR 346 (495)
Q Consensus 297 ~g~~~~~~~~~~~~~fDPEGlLStipai~~~llG~~aG~~L~~~~~~~~r 346 (495)
.+++++|....+|+++..++|+.+|++..+....+.+
T Consensus 158 -------------~~~~~~~~~Pl~PW~~~~l~G~~~G~~~~~~~~~~~~ 194 (223)
T PF07786_consen 158 -------------RNFFSNGYFPLFPWLGFFLLGMALGRLFLRKGRRRFR 194 (223)
T ss_pred -------------cCCCcCCcCccHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 2468889999999999999999999998765333333
No 4
>COG3503 Predicted membrane protein [Function unknown]
Probab=99.58 E-value=1.6e-14 Score=145.16 Aligned_cols=259 Identities=19% Similarity=0.246 Sum_probs=168.7
Q ss_pred cchhhhhhhhhcchheeeeEeccCC-cc-cccccCCC-CCCc--hhhHHHHHHHHHHHHHHHhhccccCChhHHHHHHHH
Q 011031 61 KRVATLDAFRGLTVVLMILVDDAGG-AY-ARIDHSPW-NGCT--LADFVMPFFLFIVGVAIALALKKVPKINGAVKKIIF 135 (495)
Q Consensus 61 ~Rl~SLD~~RGlti~lMIlVn~~g~-~~-~~l~Ha~W-~G~t--~aDlVfP~FlFivGvSi~ls~~~~~~~~~~~~kil~ 135 (495)
+|+.++|++||+++++|++.|..-+ ++ .+.+-+.= .|.+ ++.++.|.|+|++|+|..+|-.|...+ +++..|
T Consensus 14 ~R~~~ID~LRGla~l~MalyHf~~dl~ffg~~dl~~ta~g~~r~~ar~~A~~FlFLaG~Sl~L~~~r~~~r---~~~l~k 90 (323)
T COG3503 14 NRLGEIDILRGLALLAMALYHFFWDLEFFGYMDLATTALGLWRYFARLIASSFLFLAGVSLSLSHSRGLRR---WRFLVK 90 (323)
T ss_pred cchhhhHHHhHHHHHHHHHHHHHhhhhhcCccccchhhhhHHHHHHHHHHHHHHHHHhhHheeeccccccc---hHHHHH
Confidence 8999999999999999999997655 22 23333321 2333 789999999999999999998877664 889999
Q ss_pred HHHHHHHHHHHHhccCCCCCCccccCccCccceechhHHHHHHHHHHHHHHHHHhcCCCCCCCCccchhhhhhhHHHHHH
Q 011031 136 RTLKLLFWGIILQGGYSHAPDALSYGVDMKHIRWCGILQRIALVYVVVALIETLTTKRRPNVLEPRHLSIFTAYQWQWIG 215 (495)
Q Consensus 136 Rsl~Lf~iGl~l~~~~~~~~~~~~~~~~~~~~R~~GVLqrIa~~Y~i~all~l~~~~~~~~~~~~~~~~i~~~~~~~~~~ 215 (495)
|.++|..+++.+++. ||..-++++.++|||+.||++.++.+... ..++. ++...
T Consensus 91 RgL~l~~l~l~It~~--------Twf~~P~sfI~fgILh~igLa~ll~~~fl-~lP~~-----------------~~l~~ 144 (323)
T COG3503 91 RGLKLAALALAITAV--------TWFAFPDSFIFFGILHAIGLASLLGAAFL-WLPRA-----------------VLLAL 144 (323)
T ss_pred HHHHHHHHHHHHHHe--------eeEecCCceehHHHHHHHHHHHHHHHHHH-hCchH-----------------HHHHH
Confidence 999999999999875 45344578899999999999998877664 44432 35556
Q ss_pred HHHHHHHHHHHHHhcccCCCCccccCCCCcceeeeccCCCCCCCCCCCHHHHHHHHhcCCCCccCCccccccccccCCCC
Q 011031 216 GFIAFVIYIITTYSLYVPNWSFSEHSDHGVKKYIVKCGMRGHLGPACNAVGYVDRELWGINHLYSDPVWSRLEACTLSSP 295 (495)
Q Consensus 216 ~~~ll~~y~~l~~~~~vP~~~~~~~~~~~~~~~~~~~g~~g~l~~~~N~a~~iDr~vlG~~HlY~~p~~~~~~~c~~~~~ 295 (495)
++++++++..+-- . .++ .+..-|+-....+ |.
T Consensus 145 a~~~v~~~~lL~~-~--------------------------~f~--~~~l~w~g~~~~~-------~r------------ 176 (323)
T COG3503 145 AVAAVAAHILLRP-A--------------------------RFG--TPMLWWLGLRPYG-------PR------------ 176 (323)
T ss_pred HHHHHHhHHhcCc-c--------------------------ccC--CCchhheeecccc-------Cc------------
Confidence 6666665553320 0 000 1122222111111 10
Q ss_pred CCCCCCCCCCCcccCCCCCcchhhhhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH------------------
Q 011031 296 NSGPLREDAPSWCRAPFEPEGLLSTISAILSGTIGIHYGHVLIHFKGHSARLKHWVSMGFGL------------------ 357 (495)
Q Consensus 296 ~~g~~~~~~~~~~~~~fDPEGlLStipai~~~llG~~aG~~L~~~~~~~~r~~~ll~~G~~l------------------ 357 (495)
..|+- --+|.++-.++|+..|+.+.... ..+|......-+..+
T Consensus 177 ---------------~~dy~---PLlPW~gv~LlG~a~g~~~~~~~-~~~r~~~~~~~~~~~ll~~~~G~~sl~~y~ihq 237 (323)
T COG3503 177 ---------------TLDYY---PLLPWFGVFLLGIAFGNALRPGG-PRARRRSPAALGLALLLLAFNGRHSLKPYLIHQ 237 (323)
T ss_pred ---------------ccCcC---ccccHHHHHHHHhhhhhhhcCCc-hhhhhccccccccchhHHHHcCCCCCceeecCC
Confidence 01222 24788999999999999986432 233211111111111
Q ss_pred -HHHHHHHHhCCCccccccCCchhHHHHHHHHHHHHHHHHHHHHHhcCccchhhHHHHhchhHHHHHHHhh
Q 011031 358 -LIIAIILHFTNAIPINKQLYSFSYVCFTAGAAGIVFSALYVLMDVWELRTPFLFLKWIGMNAMLVFVLGA 427 (495)
Q Consensus 358 -lilG~ll~~~~~~PiNK~LWT~SfVL~TaG~a~llLa~~y~liDv~~~~~~~~pf~~~GmNai~iYv~s~ 427 (495)
+++|+++- +-..|.--+.-|++.|-|.+.. .++-...+ ...-+..+|.-+|+.|.+|.
T Consensus 238 p~li~lv~~----~~l~~~p~~~d~~~~~l~~c~~-------a~e~~~~~-~~~a~~~~~~~~l~~~~l~~ 296 (323)
T COG3503 238 PVLIGLVWL----FNLTKPPPSLDFVLLTLGLCLL-------ACERLPGR-GCSALCGCGLAPLFFYLLHD 296 (323)
T ss_pred CHHHHHHHH----HhcCCCCCcccHHHHHHHHHHH-------HHhcCCCC-CcchhhhcCcchHHHHHHHH
Confidence 23333332 3377888899999999854432 22333333 37789999999999999993
No 5
>PF10129 OpgC_C: OpgC protein; InterPro: IPR014550 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.89 E-value=2.2e-07 Score=97.47 Aligned_cols=79 Identities=23% Similarity=0.319 Sum_probs=57.3
Q ss_pred chhhhhhhhhcchheeeeEeccCCcccccccCCCCCCchhhHHHHHHHHHHHHHHHhhccccCCh---hHHHHHHHHHHH
Q 011031 62 RVATLDAFRGLTVVLMILVDDAGGAYARIDHSPWNGCTLADFVMPFFLFIVGVAIALALKKVPKI---NGAVKKIIFRTL 138 (495)
Q Consensus 62 Rl~SLD~~RGlti~lMIlVn~~g~~~~~l~Ha~W~G~t~aDlVfP~FlFivGvSi~ls~~~~~~~---~~~~~kil~Rsl 138 (495)
|-..||.+||+++..|.+-|-+|+.+..+.|.+ +.+.| -.-.|+|++|.+..+.+.|+..| ....+|+.||+.
T Consensus 1 Rd~riD~~RGlaL~~Ifi~Hip~~~~~~~T~~~---~Gfsd-aAE~FVflSG~~~gl~Y~~~~~~~g~~~~~~r~~~Ra~ 76 (358)
T PF10129_consen 1 RDLRIDFFRGLALVMIFIDHIPGNVLEWFTLRN---FGFSD-AAEGFVFLSGYAAGLAYGRRFRRRGLWAATRRLWRRAW 76 (358)
T ss_pred CchHHHHHHHHHHHHHHHHhcCCcHHHHhcccc---ccCCC-cchhHhhHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHH
Confidence 667799999999988777777676554444444 33333 24579999999999999876433 367889999998
Q ss_pred HHHHHH
Q 011031 139 KLLFWG 144 (495)
Q Consensus 139 ~Lf~iG 144 (495)
+|..--
T Consensus 77 ~lY~a~ 82 (358)
T PF10129_consen 77 QLYVAH 82 (358)
T ss_pred HHHHHH
Confidence 865433
No 6
>COG2311 Predicted membrane protein [Function unknown]
Probab=98.72 E-value=5.6e-07 Score=95.00 Aligned_cols=133 Identities=27% Similarity=0.415 Sum_probs=87.3
Q ss_pred cccchhhhhhhhhcchheeeeEeccCCccc----ccccCCC-CCCc-----hhhH-----HHHHHHHHHHHHHHhhcccc
Q 011031 59 KSKRVATLDAFRGLTVVLMILVDDAGGAYA----RIDHSPW-NGCT-----LADF-----VMPFFLFIVGVAIALALKKV 123 (495)
Q Consensus 59 ~~~Rl~SLD~~RGlti~lMIlVn~~g~~~~----~l~Ha~W-~G~t-----~aDl-----VfP~FlFivGvSi~ls~~~~ 123 (495)
.++|+.++|++||+++.++++||-.--.|| ..-|..| .+.- +-|+ ..|.|-|..|+.+..-++|+
T Consensus 9 ~~eRi~~LDilRG~AlLGILl~Ni~~F~~p~~~~~~~~~~~~s~~D~~a~~~v~~f~~~KF~~lFs~LFG~G~~~~~~r~ 88 (394)
T COG2311 9 QRERILTLDILRGFALLGILLVNISAFGYPGAAYLNPWSGWLSPLDAWAWALVDLFAQGKFLTLFSFLFGVGLAMMLRRA 88 (394)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhCchHHHhCcCcccCChHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHH
Confidence 348999999999999999999997522111 0114332 2221 1122 36999999999999999886
Q ss_pred CChh-HHHHHHHHHHHHHHHHHHHHhccCCCCCCccccCccCccceechhHHHHHHHHHHHHHHHHHhcCCCCCCCCccc
Q 011031 124 PKIN-GAVKKIIFRTLKLLFWGIILQGGYSHAPDALSYGVDMKHIRWCGILQRIALVYVVVALIETLTTKRRPNVLEPRH 202 (495)
Q Consensus 124 ~~~~-~~~~kil~Rsl~Lf~iGl~l~~~~~~~~~~~~~~~~~~~~R~~GVLqrIa~~Y~i~all~l~~~~~~~~~~~~~~ 202 (495)
.+|+ +..+..+||...|+++|++..-.. +| .-|=+.|-+++++.+.+.+++++
T Consensus 89 ~~~g~~~~~~~~RR~~~Lll~G~iH~~fi----------W~----------GDIL~~Ya~~g~ill~~~~~~~k------ 142 (394)
T COG2311 89 ARKGRRWVALYARRLLLLLLLGLIHALFI----------WD----------GDILLAYALTGLILLLFRRRKPK------ 142 (394)
T ss_pred HHccCccHHHHHHHHHHHHHHHHHHHHHH----------hc----------chHHHHHHHHHHHHHHHHhcccc------
Confidence 6554 344556999999999999864321 11 23456777777887777766543
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHH
Q 011031 203 LSIFTAYQWQWIGGFIAFVIYII 225 (495)
Q Consensus 203 ~~i~~~~~~~~~~~~~ll~~y~~ 225 (495)
+.+.++..+++.+.+
T Consensus 143 --------~l~~~~~~l~l~~~~ 157 (394)
T COG2311 143 --------TLLIWATALLLLPVL 157 (394)
T ss_pred --------HHHHHHHHHHHHHHH
Confidence 445555555555554
No 7
>PF01757 Acyl_transf_3: Acyltransferase family; InterPro: IPR002656 This entry contains a range of acyltransferase enzymes as well as yet uncharacterised proteins from Caenorhabditis elegans. It also includes the protein OatA. The pathogenic bacteria, Staphylococcus aureus, is able to cause persistent infections due to its ability to resist the immune defence system. Lysozyme, a cell wall-lytic enzyme, is one of the first defence compounds induced in serum and tissues after the onset of infection. S. aureus has complete resistance to lysozyme action by O-acetylating its peptidoglycan (PG) by O-acetyltransferase (OatA) [, ]. Staphylococcus bacteria are one of the only bacterial genera that are resistant to lysozyme and tend to colonise the skin and mucosa of humans and animals []. OatA is an integral membrane protein. This entry also includes NolL proteins. NolL-dependent acetylation is specific for the fucosyl penta-N-acetylglucosamine species. In addition, the NolL protein caused elevated production of lipo-chitin oligosaccharides (LCOs). The NolL protein obtained from Rhizobium loti (Mesorhizobium loti) functions as an acetyl transferase [].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups
Probab=98.46 E-value=3.2e-05 Score=74.88 Aligned_cols=54 Identities=22% Similarity=0.392 Sum_probs=37.3
Q ss_pred hhhhhhhhcchheeeeEeccCCccc-ccccCCCC--C---CchhhHHHHHHHHHHHHHHH
Q 011031 64 ATLDAFRGLTVVLMILVDDAGGAYA-RIDHSPWN--G---CTLADFVMPFFLFIVGVAIA 117 (495)
Q Consensus 64 ~SLD~~RGlti~lMIlVn~~g~~~~-~l~Ha~W~--G---~t~aDlVfP~FlFivGvSi~ 117 (495)
.++|.+||++++++++.|....... ........ . ........|.|.+++|..+.
T Consensus 2 ~~iD~lR~ia~l~Vv~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ff~iSG~~~~ 61 (340)
T PF01757_consen 2 YWIDGLRGIAILLVVFGHSFIFYFPPPFQGWPIFDSFSIFLFIGRFAVPLFFFISGYLLA 61 (340)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhcccccccchhhhhHhhhhhhhhhHHHHHHHHHHHHHH
Confidence 5899999999999999886543111 00000000 0 05678999999999999998
No 8
>PRK10835 hypothetical protein; Provisional
Probab=98.43 E-value=0.00012 Score=77.20 Aligned_cols=95 Identities=21% Similarity=0.290 Sum_probs=61.4
Q ss_pred hhhhhhcchheeeeEeccCCc-----c--cccccCCCCCCchhh--------H-----HHHHHHHHHHHHHHhhccccCC
Q 011031 66 LDAFRGLTVVLMILVDDAGGA-----Y--ARIDHSPWNGCTLAD--------F-----VMPFFLFIVGVAIALALKKVPK 125 (495)
Q Consensus 66 LD~~RGlti~lMIlVn~~g~~-----~--~~l~Ha~W~G~t~aD--------l-----VfP~FlFivGvSi~ls~~~~~~ 125 (495)
+|++||++++++.+||-+.-. | ++..| +.+..| + ..|.|-+..|+++.+-.+|..+
T Consensus 1 lD~lRGfALlGIllvNi~~f~~~~~~~~~~~~~~----~~~~~d~~~~~~~~~f~~gKf~~LFs~LFG~G~~l~~~r~~~ 76 (373)
T PRK10835 1 LDFVRGVAILGILLLNISAFGLPKAAYLNPAWYG----AISPSDAWTWAILDLVAQVKFLTLFALLFGAGLQLLLPRGKR 76 (373)
T ss_pred CcHHHHHHHHHHHHHHHHHHhCccccccCccccC----CCCchHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhhhH
Confidence 699999999999999843111 1 11111 122222 2 2589999999999988764221
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhccCCCCCCccccCccCccceechhHHHHHHHHHHHHHH
Q 011031 126 INGAVKKIIFRTLKLLFWGIILQGGYSHAPDALSYGVDMKHIRWCGILQRIALVYVVVALI 186 (495)
Q Consensus 126 ~~~~~~kil~Rsl~Lf~iGl~l~~~~~~~~~~~~~~~~~~~~R~~GVLqrIa~~Y~i~all 186 (495)
...||...|+++|++......+ -.||+-.|++=+++..+
T Consensus 77 ------~~~rRl~~Ll~~GliH~~llw~----------------GDIL~~YAv~Gl~l~~~ 115 (373)
T PRK10835 77 ------WIQSRLTLLVLLGFIHGLLFWD----------------GDILLAYGLVGLICWRL 115 (373)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHcc----------------chHHHHHHHHHHHHHHH
Confidence 3569999999999987432110 14888877776665544
No 9
>PF06423 GWT1: GWT1; InterPro: IPR009447 Glycosylphosphatidylinositol (GPI) is a conserved post-translational modification to anchor cell surface proteins to plasma membrane in eukaryotes. GWT1 is involved in GPI anchor biosynthesis; it is required for inositol acylation in yeast [].; GO: 0016746 transferase activity, transferring acyl groups, 0006506 GPI anchor biosynthetic process, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane
Probab=98.34 E-value=5.2e-06 Score=75.91 Aligned_cols=119 Identities=18% Similarity=0.289 Sum_probs=93.3
Q ss_pred CCcchhhhhHHHHHHHHHHHHHHHHhcccchh---------HHHHHHHHHHHHHHHHHHHHHhCCCccccccCCchhHHH
Q 011031 313 EPEGLLSTISAILSGTIGIHYGHVLIHFKGHS---------ARLKHWVSMGFGLLIIAIILHFTNAIPINKQLYSFSYVC 383 (495)
Q Consensus 313 DPEGlLStipai~~~llG~~aG~~L~~~~~~~---------~r~~~ll~~G~~llilG~ll~~~~~~PiNK~LWT~SfVL 383 (495)
.-|||+|.+.-++.=++|+..|+.+...+... +...+++.+.+++-++-++++. ...|++.++...+||+
T Consensus 2 NrEGi~S~~GY~aIyl~g~~~G~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~vSRRlaNl~Yvl 80 (136)
T PF06423_consen 2 NREGIFSLPGYLAIYLIGVSLGRYILPPSSSSNSSSRRQWIKLLIKLLILSFIFWALYYLLNS-YIEPVSRRLANLPYVL 80 (136)
T ss_pred CcchhhhHHHHHHHHHHHHHHhhhhhCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHh-CCCchhHHhcchHHHH
Confidence 46999999999999999999999986543322 3344566677676667777653 3799999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCccc-----hhhHHHHhchhHHHHHHHhhhhhHhhh
Q 011031 384 FTAGAAGIVFSALYVLMDVWELRT-----PFLFLKWIGMNAMLVFVLGAQGILAGF 434 (495)
Q Consensus 384 ~TaG~a~llLa~~y~liDv~~~~~-----~~~pf~~~GmNai~iYv~s~~~i~~~~ 434 (495)
++.+.....++.++.+-++....+ ...-++.+.+|.|++|+++ .++..+
T Consensus 81 wv~a~n~~~l~~~~~i~~~~~~~~~~~~~~~~l~~aiN~N~L~~FLla--NllTGl 134 (136)
T PF06423_consen 81 WVLAFNTFFLALYLLIELLLFRPKASYSKTPCLLDAINRNGLFVFLLA--NLLTGL 134 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccccHHHHHHcccccHHHHHH--HHHHcc
Confidence 999999999988777766665433 3467889999999999999 666544
No 10
>PRK03854 opgC glucans biosynthesis protein; Provisional
Probab=97.53 E-value=0.053 Score=56.79 Aligned_cols=90 Identities=19% Similarity=0.154 Sum_probs=58.1
Q ss_pred hccccchhhhhhhhhcchheeeeEeccC--Ccccc----cccCCCCCC-c--hhhHHHHHHHHHHHHHHHhhccccCChh
Q 011031 57 QQKSKRVATLDAFRGLTVVLMILVDDAG--GAYAR----IDHSPWNGC-T--LADFVMPFFLFIVGVAIALALKKVPKIN 127 (495)
Q Consensus 57 ~~~~~Rl~SLD~~RGlti~lMIlVn~~g--~~~~~----l~Ha~W~G~-t--~aDlVfP~FlFivGvSi~ls~~~~~~~~ 127 (495)
+++++|...+|.+||+++++.++.|..- +.... .+.+.|-.. . ..-.-+|.|.|++|.....+.+|+ +.+
T Consensus 3 ~~~~~R~~~lD~lR~~a~l~VV~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~mplFf~iSG~~~~~~~~~~-~~~ 81 (375)
T PRK03854 3 PVPAQREYFLDSIRAWLMLLGIPFHISLIYSSHTWHVNSAEPSLWLTLLNDFIHAFRMQVFFVISGYFSYMLFLRY-PPK 81 (375)
T ss_pred CCccchhhhHHHHHHHHHHHHHHHHHHHHhccccccccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-cHH
Confidence 4456899999999999999888877531 11100 111112111 0 011458999999999988887654 334
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 011031 128 GAVKKIIFRTLKLLFWGIIL 147 (495)
Q Consensus 128 ~~~~kil~Rsl~Lf~iGl~l 147 (495)
+.++|=++|.+.-++++.++
T Consensus 82 ~f~~~R~~rl~iP~l~~~~~ 101 (375)
T PRK03854 82 RWLKVRLERVGIPMLTAIPL 101 (375)
T ss_pred HHHHHHHHHhhHHHHHHHHH
Confidence 66777788888877776544
No 11
>PF04235 DUF418: Protein of unknown function (DUF418); InterPro: IPR007349 Tihs is a probable integral membrane protein. It is usually found associated with (IPR007299 from INTERPRO).
Probab=96.79 E-value=0.028 Score=52.13 Aligned_cols=92 Identities=17% Similarity=0.143 Sum_probs=63.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHh-----CCCccccccCCchhHHHHHHHHHHHHHHHHHHHHHhcCccchhhHHHHh
Q 011031 341 KGHSARLKHWVSMGFGLLIIAIILHF-----TNAIPINKQLYSFSYVCFTAGAAGIVFSALYVLMDVWELRTPFLFLKWI 415 (495)
Q Consensus 341 ~~~~~r~~~ll~~G~~llilG~ll~~-----~~~~PiNK~LWT~SfVL~TaG~a~llLa~~y~liDv~~~~~~~~pf~~~ 415 (495)
+.+++..++.+.++++..+...+... ....+.+....+....+.....++...+++..+.+..+.++...||...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~y~~l~~ll~~~~~~~~~~~~l~~~ 90 (163)
T PF04235_consen 11 EEHRKLLRRLLLIGLAVGLPLALLSAASWLSAWPSPPAAHLSSVLYMLGGPLLALGYVALLILLCQKRPRQRLLRPLAAV 90 (163)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHH
Confidence 34444555555555555443333322 1134455666666677777778888899999999998888889999999
Q ss_pred chhHHHHHHHhhhhhHhhh
Q 011031 416 GMNAMLVFVLGAQGILAGF 434 (495)
Q Consensus 416 GmNai~iYv~s~~~i~~~~ 434 (495)
|+-|+..|+.| .++...
T Consensus 91 GrmaLT~Yi~q--sii~~~ 107 (163)
T PF04235_consen 91 GRMALTNYILQ--SIIGTL 107 (163)
T ss_pred hhHHHHHHHHH--HHHHHH
Confidence 99999999999 555443
No 12
>COG3594 NolL Fucose 4-O-acetylase and related acetyltransferases [Carbohydrate transport and metabolism]
Probab=95.96 E-value=0.45 Score=50.07 Aligned_cols=69 Identities=28% Similarity=0.364 Sum_probs=45.0
Q ss_pred ccchhhhhhhhhcchheeeeEeccCCcccccccCCCCCC---chhhHHHHHHHHHHHHHHHhhccccCChh---HHHHHH
Q 011031 60 SKRVATLDAFRGLTVVLMILVDDAGGAYARIDHSPWNGC---TLADFVMPFFLFIVGVAIALALKKVPKIN---GAVKKI 133 (495)
Q Consensus 60 ~~Rl~SLD~~RGlti~lMIlVn~~g~~~~~l~Ha~W~G~---t~aDlVfP~FlFivGvSi~ls~~~~~~~~---~~~~ki 133 (495)
.+|-.++|+-||+-|.+.++-|..+..++ |.-. -..-+-+|+|.||+|.-. |..++. +..+|-
T Consensus 2 ~~R~~~~D~AKGigIlLVV~GH~~~p~~~------~~~~l~~~IysFHMPlFf~ISGyf~-----k~~~~~~~~~~~~kk 70 (343)
T COG3594 2 KKRDLWFDAAKGIGILLVVFGHILQPISP------WLSVLYKFIYSFHMPLFFFISGYFY-----KTEKRAKSTQYVKKK 70 (343)
T ss_pred chhHHHHhHhhccchhhhhhhhhcccccc------cchHHHHHHHHHHHHHHHhhhhhcc-----ccccccchhhHHHHH
Confidence 47999999999999998888775543111 2211 245677999999999642 222222 556666
Q ss_pred HHHHHH
Q 011031 134 IFRTLK 139 (495)
Q Consensus 134 l~Rsl~ 139 (495)
.|+-++
T Consensus 71 ~~tLiv 76 (343)
T COG3594 71 ARTLIV 76 (343)
T ss_pred HHHHHH
Confidence 665554
No 13
>COG4645 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.90 E-value=0.025 Score=59.04 Aligned_cols=79 Identities=24% Similarity=0.357 Sum_probs=57.1
Q ss_pred ccchhhhhhhhhcchheeeeEeccCCcccccccCCCCCCchhhHHHHHHHHHHHHHHHhhccccCCh-h--HHHHHHHHH
Q 011031 60 SKRVATLDAFRGLTVVLMILVDDAGGAYARIDHSPWNGCTLADFVMPFFLFIVGVAIALALKKVPKI-N--GAVKKIIFR 136 (495)
Q Consensus 60 ~~Rl~SLD~~RGlti~lMIlVn~~g~~~~~l~Ha~W~G~t~aDlVfP~FlFivGvSi~ls~~~~~~~-~--~~~~kil~R 136 (495)
.+|...||+|||++++.|.+-|-+|..+..++|-+ +.+.|- .=.|+||+|+++..+++|+--+ + ..-.|+-+|
T Consensus 21 mkRdtriDv~Ral~Lv~IfiNHvpgt~le~itHkn---fgfsda-AEaFVliSGllvgmaYsrKf~~ggrla~~lkiWrR 96 (410)
T COG4645 21 MKRDTRIDVFRALALVTIFINHVPGTILEEITHKN---FGFSDA-AEAFVLISGLLVGMAYSRKFMKGGRLAGTLKIWRR 96 (410)
T ss_pred cCchhHHHHHHHHHHHHHHHhcccHHHHHHhhccc---cccccc-chhhhhHHHHHHHHHHhhhhccCcHHHHHHHHHHH
Confidence 36999999999999998877666776555577765 333332 3478999999999999875322 2 334478888
Q ss_pred HHHHHH
Q 011031 137 TLKLLF 142 (495)
Q Consensus 137 sl~Lf~ 142 (495)
...|..
T Consensus 97 A~~LY~ 102 (410)
T COG4645 97 AMVLYV 102 (410)
T ss_pred HHHHHH
Confidence 877765
No 14
>COG3274 Predicted O-acyltransferase [General function prediction only]
Probab=93.78 E-value=2.2 Score=44.60 Aligned_cols=69 Identities=13% Similarity=0.282 Sum_probs=46.5
Q ss_pred cchhhhhhhhhcchheeeeEeccCC-ccc-ccccC-CC---CCCc-hhhHHHHHHHHHHHHHHHhhccccCChhHHHHH
Q 011031 61 KRVATLDAFRGLTVVLMILVDDAGG-AYA-RIDHS-PW---NGCT-LADFVMPFFLFIVGVAIALALKKVPKINGAVKK 132 (495)
Q Consensus 61 ~Rl~SLD~~RGlti~lMIlVn~~g~-~~~-~l~Ha-~W---~G~t-~aDlVfP~FlFivGvSi~ls~~~~~~~~~~~~k 132 (495)
+|..++|.+|++++++-+.+|..-. .+. -..|. .| |++. ......|.|..|.|.- ...++...++.+.|
T Consensus 3 ~ri~wiD~~r~iA~f~VV~iH~~~~~~t~~~~vs~~~w~i~nvlns~sr~aVPLFfmISGyL---~~~e~s~q~~~f~r 78 (332)
T COG3274 3 PRIVWIDLLRSIACFMVVMIHSTLWSVTEAHFVSPTLWIIANVLNSASRVAVPLFFMISGYL---FFGERSAQPKLFLR 78 (332)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcccccccHHHHHH
Confidence 6999999999999988888887643 222 22222 14 6664 7788999999999953 34443333444555
No 15
>COG5062 Uncharacterized membrane protein [Function unknown]
Probab=91.38 E-value=1.7 Score=46.01 Aligned_cols=262 Identities=19% Similarity=0.223 Sum_probs=137.3
Q ss_pred ccchhhhhhhhhcc----hheeeeEeccCCccc-ccccCCCCCCchhhHHHHHHHHHHHHHHHhhccccCChhHHHHHHH
Q 011031 60 SKRVATLDAFRGLT----VVLMILVDDAGGAYA-RIDHSPWNGCTLADFVMPFFLFIVGVAIALALKKVPKINGAVKKII 134 (495)
Q Consensus 60 ~~Rl~SLD~~RGlt----i~lMIlVn~~g~~~~-~l~Ha~W~G~t~aDlVfP~FlFivGvSi~ls~~~~~~~~~~~~kil 134 (495)
+.|-..+|..|+.. ++.+.-|+.+- || .+.-++--|.++-|+-.-.|+|-.|+-- . |.++ |+.+
T Consensus 108 ~~~~~~it~yR~~i~~~tviaIlAvDFp~--fprRlgKsetwGtsLMDiGVGSFvynsGivs---~-Raks-----K~~l 176 (429)
T COG5062 108 PYTSMAITRYRFLIIGCTVIAILAVDFPF--FPRRLGKSETWGTSLMDIGVGSFVYNSGIVS---T-RAKS-----KRKL 176 (429)
T ss_pred ccchhhhHHHHHHHHHhhhhheeeecccc--chHhhhhhhcccceeeecccceeEeccceee---c-ccCc-----cHHH
Confidence 45777888888754 34444455442 22 3445555678899999999999888632 2 2222 2478
Q ss_pred HHHHHHHHHHHHHhccCCCCCCccccCccCccceechhHHHHHHHHHHHHHHHHHhcCCCCCCCCccchhhhhhhHHHHH
Q 011031 135 FRTLKLLFWGIILQGGYSHAPDALSYGVDMKHIRWCGILQRIALVYVVVALIETLTTKRRPNVLEPRHLSIFTAYQWQWI 214 (495)
Q Consensus 135 ~Rsl~Lf~iGl~l~~~~~~~~~~~~~~~~~~~~R~~GVLqrIa~~Y~i~all~l~~~~~~~~~~~~~~~~i~~~~~~~~~ 214 (495)
|-++.|+++|++=. |... +..-.+|.|=.||=--.=+.--+..+.+.+.+++ ....
T Consensus 177 kn~lillflGflR~--f~vk-----~lnyqvhvrEyGvhwNFfftLgllnl~~~fir~r-----------------~nfl 232 (429)
T COG5062 177 KNALILLFLGFLRY--FSVK-----LLNYQVHVREYGVHWNFFFTLGLLNLASLFIRTR-----------------ANFL 232 (429)
T ss_pred HhhhHHHHHHHHHH--HHHH-----HhccccccHHheeehhHHHHHHHHHHHHHHhhhh-----------------HhHH
Confidence 89999999999631 1100 0112234443344332222222333444444332 2244
Q ss_pred HHHHHHHHHHHHHHhcccCCCCccccCCCCcceeeeccCCCCCCCCCCCHHHHHHHHhcCCCCccCCccccccccccCCC
Q 011031 215 GGFIAFVIYIITTYSLYVPNWSFSEHSDHGVKKYIVKCGMRGHLGPACNAVGYVDRELWGINHLYSDPVWSRLEACTLSS 294 (495)
Q Consensus 215 ~~~~ll~~y~~l~~~~~vP~~~~~~~~~~~~~~~~~~~g~~g~l~~~~N~a~~iDr~vlG~~HlY~~p~~~~~~~c~~~~ 294 (495)
++..+...|=+++-..+ + .|+.--=||.=
T Consensus 233 Lg~fi~l~he~lLkf~~--------------------------l---~kfi~sa~R~~---------------------- 261 (429)
T COG5062 233 LGFFICLTHELLLKFFG--------------------------L---EKFIYSAARSS---------------------- 261 (429)
T ss_pred HHHHHHHHHHHHHHhcc--------------------------H---HHhhhcCchhh----------------------
Confidence 55555555554442210 0 01110111110
Q ss_pred CCCCCCCCCCCCcccCCCCCcchhhhhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH---HHHHHHHHHhCCCcc
Q 011031 295 PNSGPLREDAPSWCRAPFEPEGLLSTISAILSGTIGIHYGHVLIHFKGHSARLKHWVSMGFG---LLIIAIILHFTNAIP 371 (495)
Q Consensus 295 ~~~g~~~~~~~~~~~~~fDPEGlLStipai~~~llG~~aG~~L~~~~~~~~r~~~ll~~G~~---llilG~ll~~~~~~P 371 (495)
...-+-|||-|++|-+..-+.|.-.|+++...+..+ .+.|=.++.. .+.+=.+.++...
T Consensus 262 --------------il~~NrEGI~sll~yisIfl~g~~tg~vvf~~kpTr--~~~wk~~~~~~af~lciylVfnf~s~-- 323 (429)
T COG5062 262 --------------ILTSNREGITSLLPYISIFLMGADTGKVVFKKKPTR--KKAWKIIILYNAFFLCVYLVFNFYST-- 323 (429)
T ss_pred --------------HHHhchhhhhhcchhhhheeeecccceEEecCCCch--HHHHHHHHHHHHHHHHHHHHHhhccc--
Confidence 012278999999999999999999999986554432 2233333332 2222223344211
Q ss_pred ccccCCchhHHHHHHHHHHHHHHHHHHHHHhcCc--cchhhHHHHhchhHHHHHHHh
Q 011031 372 INKQLYSFSYVCFTAGAAGIVFSALYVLMDVWEL--RTPFLFLKWIGMNAMLVFVLG 426 (495)
Q Consensus 372 iNK~LWT~SfVL~TaG~a~llLa~~y~liDv~~~--~~~~~pf~~~GmNai~iYv~s 426 (495)
=..++=...||++..-+=.+- ...|.++|---. .+-..-|+-.-+|-++++..+
T Consensus 324 ssRRlaNlpfv~wi~~lh~f~-lt~y~lfd~ts~~yn~v~~~fes~n~n~llvfs~a 379 (429)
T COG5062 324 SSRRLANLPFVMWIMLLHTFH-LTVYELFDRTSKIYNLVMHRFESKNLNFLLVFSNA 379 (429)
T ss_pred chhhhcCccHHHHHHHHHHHH-hheeeeeecccchhhhHHHHHHhcccchHHHHHHH
Confidence 177888888988876654443 334566665321 222334444455555554444
No 16
>PF15345 TMEM51: Transmembrane protein 51
Probab=89.46 E-value=0.27 Score=48.94 Aligned_cols=58 Identities=26% Similarity=0.471 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHhCCCcc----------------------ccccCCchhHHHHHHHHHHHHHHHHHHHHHhcCccc
Q 011031 350 WVSMGFGLLIIAIILHFTNAIP----------------------INKQLYSFSYVCFTAGAAGIVFSALYVLMDVWELRT 407 (495)
Q Consensus 350 ll~~G~~llilG~ll~~~~~~P----------------------iNK~LWT~SfVL~TaG~a~llLa~~y~liDv~~~~~ 407 (495)
+-.+|+.|+++|.++-.+.++| .+++=-|.-|||+-+|.++|+|++|.-+=|-++.+.
T Consensus 9 L~AiG~Gml~LGiiM~vW~~VPg~~~~~~~~~~~~n~~~~~~~~~ksKt~SVAyVLVG~Gv~LLLLSICL~IR~KRr~rq 88 (233)
T PF15345_consen 9 LTAIGVGMLALGIIMIVWNLVPGFSSGNKPTPQGSNSTEPSDGNLKSKTFSVAYVLVGSGVALLLLSICLSIRDKRRRRQ 88 (233)
T ss_pred HHHHhHhHHHHhhHheeeeecccccCCCCCCCCCCCCcCCCCCcccceeEEEEEehhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 5578889999998875443344 334556778999999999999999998888776543
No 17
>COG1835 Predicted acyltransferases [Lipid metabolism]
Probab=85.79 E-value=7.9 Score=40.74 Aligned_cols=68 Identities=16% Similarity=0.277 Sum_probs=43.0
Q ss_pred hhhccccchhhhhhhhhcchheeeeEeccCCcccccccCCCCCCchhhHHHHHHHHHHHHHHHhhccccCCh
Q 011031 55 LLQQKSKRVATLDAFRGLTVVLMILVDDAGGAYARIDHSPWNGCTLADFVMPFFLFIVGVAIALALKKVPKI 126 (495)
Q Consensus 55 ~~~~~~~Rl~SLD~~RGlti~lMIlVn~~g~~~~~l~Ha~W~G~t~aDlVfP~FlFivGvSi~ls~~~~~~~ 126 (495)
..++.++|+.+||.+||+++++-++.|......+ ++..+-+ ...+--..|..++|.-|.-++.++..+
T Consensus 7 ~~~~~~~~~~~ldgLR~iAal~Vv~~H~~~~~~~--~~~g~~~--~g~~gVdiFFvlSGfli~~~~~~~~~~ 74 (386)
T COG1835 7 AINSSGGRLPGLDGLRAIAALLVVLYHAGFQIGP--GPGGFVG--RGVLGVDLFFVLSGFLITRSLLRSAAA 74 (386)
T ss_pred cccccccccCCcHHHHHHHHHHHHHHHccccccC--CCCcccc--ccccceeEeeeccHHHHHHHHHHHhhc
Confidence 3344468999999999999988877765432110 0111111 223444568889999999988665443
No 18
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=53.60 E-value=31 Score=39.22 Aligned_cols=68 Identities=21% Similarity=0.358 Sum_probs=40.9
Q ss_pred CCCCcchhh-hhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCchhHHHHHHHHH
Q 011031 311 PFEPEGLLS-TISAILSGTIGIHYGHVLIHFKGHSARLKHWVSMGFGLLIIAIILHFTNAIPINKQLYSFSYVCFTAGAA 389 (495)
Q Consensus 311 ~fDPEGlLS-tipai~~~llG~~aG~~L~~~~~~~~r~~~ll~~G~~llilG~ll~~~~~~PiNK~LWT~SfVL~TaG~a 389 (495)
..||.-++. |.|. ++|+..|. ++-|++++++|+++... ..-.++.+-...+++..+|++
T Consensus 343 EiDPT~~~ai~f~l----fFGmM~gD---------------~GyGLil~l~~~~l~~~-~~k~~~~~~~~~~il~~~gi~ 402 (646)
T PRK05771 343 EIDPTPFLAIFFPL----FFGMMLGD---------------AGYGLLLLLIGLLLSFK-LKKKSEGLKRLLKILIYLGIS 402 (646)
T ss_pred CcCCccHHHHHHHH----HHHHHHHh---------------HHHHHHHHHHHHHHHHh-cccccHHHHHHHHHHHHHHHH
Confidence 369988766 3443 67777765 33566666656554321 112344555667777777777
Q ss_pred HHHHHHHHH
Q 011031 390 GIVFSALYV 398 (495)
Q Consensus 390 ~llLa~~y~ 398 (495)
.++++++|-
T Consensus 403 sii~G~lyG 411 (646)
T PRK05771 403 TIIWGLLTG 411 (646)
T ss_pred HHHHHHHHH
Confidence 777777763
No 19
>PF07786 DUF1624: Protein of unknown function (DUF1624); InterPro: IPR012429 These sequences are found in hypothetical proteins of unknown function expressed by bacterial and archaeal species. The region in question is approximately 230 residues long.
Probab=43.79 E-value=70 Score=30.89 Aligned_cols=19 Identities=16% Similarity=0.494 Sum_probs=17.4
Q ss_pred hhhHHHHhchhHHHHHHHh
Q 011031 408 PFLFLKWIGMNAMLVFVLG 426 (495)
Q Consensus 408 ~~~pf~~~GmNai~iYv~s 426 (495)
...++.++|.+++++|++|
T Consensus 203 ~~~~l~~~G~~sL~iY~~h 221 (223)
T PF07786_consen 203 LIRPLAFLGRHSLLIYLIH 221 (223)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4579999999999999998
No 20
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=33.69 E-value=4.2e+02 Score=29.16 Aligned_cols=124 Identities=16% Similarity=0.124 Sum_probs=64.4
Q ss_pred CcchhhhhHHHHHHHHHHHHHHHHhcccc--hhHHHHHHHHHHHHHHHHHHHHHhCCCccccccCC-chhHHHHHHHHH-
Q 011031 314 PEGLLSTISAILSGTIGIHYGHVLIHFKG--HSARLKHWVSMGFGLLIIAIILHFTNAIPINKQLY-SFSYVCFTAGAA- 389 (495)
Q Consensus 314 PEGlLStipai~~~llG~~aG~~L~~~~~--~~~r~~~ll~~G~~llilG~ll~~~~~~PiNK~LW-T~SfVL~TaG~a- 389 (495)
--|++|.+|-++..+..+.+|.+-..-+. ..++.++-+.-.+..+..|..+-. ++.-++-+ ..+.+++|.+.+
T Consensus 295 ~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~---l~~~~~~~~~~a~~~l~~~~~~ 371 (466)
T KOG2532|consen 295 ETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLV---LAFTSDEHRLLAVILLTIAIGL 371 (466)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHe---eeecCCCcchHHHHHHHHHHHH
Confidence 45899999999999999999987532222 223323323333333333333322 22333222 255555555444
Q ss_pred -HHHHHHHHHH-HH-hcCccchhhHHHHhchhHHHHHHHhhhhhHhhhhcceeecCCCcChHHH
Q 011031 390 -GIVFSALYVL-MD-VWELRTPFLFLKWIGMNAMLVFVLGAQGILAGFVNGWYYKNPDNTLVNW 450 (495)
Q Consensus 390 -~llLa~~y~l-iD-v~~~~~~~~pf~~~GmNai~iYv~s~~~i~~~~l~~~~~~~~~~~l~~w 450 (495)
.+..+-+|.- .| -.++ -=.++|++.....+.. .+.|.+.+ .-.+ +++..+|
T Consensus 372 ~g~~~~Gf~~~~~~~apq~-----a~~l~g~~~~~~~~~~--~~~P~~vg-~~~~--~~t~~eW 425 (466)
T KOG2532|consen 372 SGFNISGFYKNHQDIAPQH-----AGFVMGIINFVGALAG--FIAPLLVG-IIVT--DNTREEW 425 (466)
T ss_pred cccchhhhHhhhhhccchH-----HHHHHHHHHHHHHHHH--HHHHHhee-eEeC--CCCHHHH
Confidence 4444444433 35 2222 2245788888777765 44444443 3333 3366677
No 21
>PF05857 TraX: TraX protein; InterPro: IPR008875 This family consists of several bacterial TraX proteins. TraX is responsible for the N-terminal acetylation of F-pilin subunits [].
Probab=29.08 E-value=4e+02 Score=25.80 Aligned_cols=103 Identities=18% Similarity=0.245 Sum_probs=57.4
Q ss_pred hhhhhhhcchheeeeEeccCCcccccccCCCCCCchhhHHHHHHHHHHHHHHHhhccccCChhHHHHHHHHHHHHHHHHH
Q 011031 65 TLDAFRGLTVVLMILVDDAGGAYARIDHSPWNGCTLADFVMPFFLFIVGVAIALALKKVPKINGAVKKIIFRTLKLLFWG 144 (495)
Q Consensus 65 SLD~~RGlti~lMIlVn~~g~~~~~l~Ha~W~G~t~aDlVfP~FlFivGvSi~ls~~~~~~~~~~~~kil~Rsl~Lf~iG 144 (495)
|-|.+.=++++.|++-|-. - -...+.+| --.+..+.||.|.|++.-...- .+..+|.++|... .+
T Consensus 2 s~~~LK~iA~i~M~iDHi~-~--~~~~~~~~-~~~iGR~afPlF~f~~~eG~~~--------T~n~~kY~~RL~~---~a 66 (219)
T PF05857_consen 2 SGFQLKIIAIIAMLIDHIG-F--LFFPDGPW-LRIIGRIAFPLFAFLLVEGFFH--------TRNRKKYLLRLLI---FA 66 (219)
T ss_pred chhHHHHHHHHHHHHHhhc-c--cccCcchH-HHHhhHHHHHHHHHHHHHHHhh--------hhhHHHHHHHHHH---HH
Confidence 5577777899999886644 1 11222222 1237899999999998644432 2334666666544 44
Q ss_pred HHHhccCCCCCCccccCccCccceechhHHHHHHHHHHHHHHHH
Q 011031 145 IILQGGYSHAPDALSYGVDMKHIRWCGILQRIALVYVVVALIET 188 (495)
Q Consensus 145 l~l~~~~~~~~~~~~~~~~~~~~R~~GVLqrIa~~Y~i~all~l 188 (495)
++.+..|.-.. . ........+|+=-++++..+...+..
T Consensus 67 lis~ip~~l~~-----~-~~~~~~~~NI~fTl~lg~~~l~~~~~ 104 (219)
T PF05857_consen 67 LISQIPFDLAF-----G-KFFDWLSQNILFTLALGLLALYLLDR 104 (219)
T ss_pred HHHHHHHHHHh-----h-cccccccccHHHHHHHHHHHHHHHHH
Confidence 44432211000 0 11123345777777887776666653
No 22
>PF13828 DUF4190: Domain of unknown function (DUF4190)
Probab=28.74 E-value=1e+02 Score=24.67 Aligned_cols=49 Identities=27% Similarity=0.373 Sum_probs=25.4
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHH
Q 011031 316 GLLSTISAILSGTIGIHYGHVLIHF-KGHSARLKHWVSMGFGLLIIAIIL 364 (495)
Q Consensus 316 GlLStipai~~~llG~~aG~~L~~~-~~~~~r~~~ll~~G~~llilG~ll 364 (495)
|++|.+......+.|+..|+.-+++ +...++=+.+...|+++..++.++
T Consensus 9 gi~~~~~~~~~~i~aiilG~ial~~i~r~~~~G~g~A~aGivlG~i~~~~ 58 (62)
T PF13828_consen 9 GILGLFLCGLLGIVAIILGHIALRQIRRSGQRGRGMAIAGIVLGYIGIVL 58 (62)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHH
Confidence 4455333344556666666653221 111234455667777776666554
No 23
>COG3619 Predicted membrane protein [Function unknown]
Probab=27.94 E-value=74 Score=31.89 Aligned_cols=57 Identities=18% Similarity=0.259 Sum_probs=42.1
Q ss_pred cccCCCCCCchhhHHHHHHHHHHHHHHHhhccccCChhHHHHHHHHHHHHHHHHHHHHh
Q 011031 90 IDHSPWNGCTLADFVMPFFLFIVGVAIALALKKVPKINGAVKKIIFRTLKLLFWGIILQ 148 (495)
Q Consensus 90 l~Ha~W~G~t~aDlVfP~FlFivGvSi~ls~~~~~~~~~~~~kil~Rsl~Lf~iGl~l~ 148 (495)
.+-++++....-+...|.+.|++|+...--++|+..+ ...-.+.+...++.+++.+.
T Consensus 48 i~l~~~~~~~a~~~~~pii~Fv~Gv~~~~~~~r~~~~--~~~~~l~~~~~ll~~~v~~~ 104 (226)
T COG3619 48 IELAEGDAALAVLLLLPILAFVLGVAAAELISRRATR--SFIPVLLLVSLLLALIALLA 104 (226)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHHHHH
Confidence 4556677788889999999999999988888776554 23334556666777777654
No 24
>KOG3700 consensus Predicted acyltransferase [General function prediction only]
Probab=24.94 E-value=1.2e+03 Score=27.42 Aligned_cols=62 Identities=21% Similarity=0.237 Sum_probs=37.7
Q ss_pred cchhhhhhhhhcchheeeeEeccC-----------Cccc----ccccCCCCCCchhhHHHHHHHHHHHHHHHhhccccCC
Q 011031 61 KRVATLDAFRGLTVVLMILVDDAG-----------GAYA----RIDHSPWNGCTLADFVMPFFLFIVGVAIALALKKVPK 125 (495)
Q Consensus 61 ~Rl~SLD~~RGlti~lMIlVn~~g-----------~~~~----~l~Ha~W~G~t~aDlVfP~FlFivGvSi~ls~~~~~~ 125 (495)
+=+.+||-+|.++++.-|+.|.-. ...+ +..|=.=|+..-.| .|+|+.|+-.+++.-|+..
T Consensus 267 ~~I~~L~giR~lS~~WVi~gH~~~~~~~~~~~n~~~~~~~~~~~~~~l~~na~lsVD----tFf~lSG~l~a~~~fk~~~ 342 (705)
T KOG3700|consen 267 GFIDCLDGIRFLSMFWVVFGHTFNFLQFSPVDNLASLLAFVESLWTHLILNASLSVD----TFFFLSGLLLAYLFFKKKP 342 (705)
T ss_pred CcceeecchheeeeeEEEeccEEEEEeccccccHHHHHHHHHhhHHHHHHhcchhhh----HHHHHHHHHHHHHHHhccc
Confidence 459999999999987666644321 1110 11220113333444 4788999999999976544
Q ss_pred h
Q 011031 126 I 126 (495)
Q Consensus 126 ~ 126 (495)
+
T Consensus 343 k 343 (705)
T KOG3700|consen 343 K 343 (705)
T ss_pred c
Confidence 3
No 25
>PF01284 MARVEL: Membrane-associating domain; InterPro: IPR021128 This entry represents the ~130-residue MARVEL (MAL and related proteins for vesicle trafficking and membrane link) domain. The MARVEL domain is a module with a four transmembrane-helix architecture that has been identified in proteins of the myelin and lymphocyte (MAL), physins, gyrins and occludin families. All described MARVEL domain-containing proteins are consistent with the M-shaped topology: four transmembrane-helix region architecture with cytoplasmic N- and C-terminal regions. Their function could be related to cholesterol-rich membrane apposition events in a variety of cellular processes, such as biogenesis of vesicular transport carriers or tight junction regulation [].
Probab=22.80 E-value=5.1e+02 Score=22.49 Aligned_cols=75 Identities=11% Similarity=0.133 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHhC--CCccccccCCchhHHHHHHHHHHHHHHHHHHHHHhc---CccchhhHHHHhchhHHHHH
Q 011031 349 HWVSMGFGLLIIAIILHFT--NAIPINKQLYSFSYVCFTAGAAGIVFSALYVLMDVW---ELRTPFLFLKWIGMNAMLVF 423 (495)
Q Consensus 349 ~ll~~G~~llilG~ll~~~--~~~PiNK~LWT~SfVL~TaG~a~llLa~~y~liDv~---~~~~~~~pf~~~GmNai~iY 423 (495)
|.+.+...+++.|+.-+.. +....+...-...|.+++++.+.+. ++.+.+++.. ...+...|...++.+++...
T Consensus 10 R~lq~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~i 88 (144)
T PF01284_consen 10 RILQLVFALIIFGLVASSIATGSQIYGGSPSACGFALFVAVLSFLY-TLIFLLLYLFSLKYRPRIPWPLVEFIFDAVFAI 88 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccCCCCcchhHHHHHHHHHHHH-HHHHHHHHHHHHhcccccccchhHHHHHHHHHH
Confidence 4444444445555554431 1234566677889999999988877 6666666652 22233456666677766554
Q ss_pred H
Q 011031 424 V 424 (495)
Q Consensus 424 v 424 (495)
+
T Consensus 89 l 89 (144)
T PF01284_consen 89 L 89 (144)
T ss_pred H
Confidence 3
No 26
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=20.47 E-value=4.6e+02 Score=28.65 Aligned_cols=104 Identities=18% Similarity=0.261 Sum_probs=50.0
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCc--hhHHHHHHHHHHHHH
Q 011031 316 GLLSTISAILSGTIGIHYGHVLIHFKGHSARLKHWVSMGFGLLIIAIILHFTNAIPINKQLYS--FSYVCFTAGAAGIVF 393 (495)
Q Consensus 316 GlLStipai~~~llG~~aG~~L~~~~~~~~r~~~ll~~G~~llilG~ll~~~~~~PiNK~LWT--~SfVL~TaG~a~llL 393 (495)
|..-.+..+..++..+.+|.+ +...++...+.+....++..|.++- +...+++|- .+||++-+...+++=
T Consensus 288 G~VeA~~tllgA~~al~~g~v----~~~w~~~~~l~l~~~S~l~a~~L~l----m~~t~~Iwv~Y~~yIif~~~y~fliT 359 (412)
T PF01770_consen 288 GAVEAASTLLGAIAALLAGYV----KVNWDRWGELALGVFSLLQAGLLFL----MSFTGNIWVCYAGYIIFRSLYMFLIT 359 (412)
T ss_pred hHHHHHHHHHHHHHHHHHhHh----hcchHHHHHHHHHHHHHHHHHHHHH----HHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444543 2233333333333333333444431 334555553 466666666555543
Q ss_pred HHHHHHHHhcCccchhhHHHHhchhHHHHHHHhhhhhHh
Q 011031 394 SALYVLMDVWELRTPFLFLKWIGMNAMLVFVLGAQGILA 432 (495)
Q Consensus 394 a~~y~liDv~~~~~~~~pf~~~GmNai~iYv~s~~~i~~ 432 (495)
.+.+-+---.... ..=.++|.|..++.++. .++.
T Consensus 360 iA~~qIA~~l~~e---~yaLVFGiNtf~Al~LQ--tilT 393 (412)
T PF01770_consen 360 IASFQIAKNLSEE---RYALVFGINTFVALVLQ--TILT 393 (412)
T ss_pred HHHHHHHHhcccc---ceeeeeeeHHHHHHHHH--HheE
Confidence 3333222111112 23357899999999988 4543
Done!