Query 011031
Match_columns 495
No_of_seqs 191 out of 580
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 19:22:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011031.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011031hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3n2f_G Na+/K+ ATPase gamma sub 20.3 18 0.00062 24.3 -0.4 28 92-119 4-31 (31)
2 1qle_C Cytochrome C oxidase po 18.8 6.2E+02 0.021 24.4 10.2 74 311-386 134-214 (273)
3 1m56_C Cytochrome C oxidase; m 14.5 6E+02 0.021 24.4 8.8 45 342-386 159-207 (266)
4 1jb0_J Photosystem 1 reaction 13.2 1.4E+02 0.0048 21.2 2.8 22 317-338 7-28 (41)
5 2xut_A Proton/peptide symporte 11.7 9.9E+02 0.034 23.5 9.9 46 315-364 56-101 (524)
6 1v54_C Cytochrome C oxidase po 10.3 6.6E+02 0.023 24.0 7.6 72 312-385 124-201 (261)
7 3mk7_A Cytochrome C oxidase, C 10.1 1.4E+03 0.046 23.8 12.4 109 317-426 271-400 (474)
8 2jo1_A Phospholemman; FXYD1, N 9.9 1.2E+02 0.0041 24.1 1.6 29 93-121 11-39 (72)
9 1pw4_A Glycerol-3-phosphate tr 9.8 9.6E+02 0.033 22.8 8.8 45 315-364 64-108 (451)
10 2ks1_B Epidermal growth factor 8.5 4E+02 0.014 19.0 3.9 12 480-491 29-40 (44)
No 1
>3n2f_G Na+/K+ ATPase gamma subunit transcript variant A; sodium-potassium pump, P-type ATPase, cardiotonic steroids,; HET: PHD; 4.10A {Sus scrofa} PDB: 3n23_G*
Probab=20.27 E-value=18 Score=24.33 Aligned_cols=28 Identities=21% Similarity=0.386 Sum_probs=22.9
Q ss_pred cCCCCCCchhhHHHHHHHHHHHHHHHhh
Q 011031 92 HSPWNGCTLADFVMPFFLFIVGVAIALA 119 (495)
Q Consensus 92 Ha~W~G~t~aDlVfP~FlFivGvSi~ls 119 (495)
|-+|+.+....+++-..+|++|+.+.+|
T Consensus 4 ~yDy~tLrigGLi~a~vLfi~gi~iils 31 (31)
T 3n2f_G 4 YYDYETVRNGGLIFAALAFIVGLIIILS 31 (31)
T ss_dssp CCCHHHHHHHHTTTHHHHHHHHHHHHTC
T ss_pred CCChHHHhhcchhHHHHHHHHHHHHhcC
Confidence 4467777788899999999999988765
No 2
>1qle_C Cytochrome C oxidase polypeptide III; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.25.1.1
Probab=18.78 E-value=6.2e+02 Score=24.41 Aligned_cols=74 Identities=19% Similarity=0.267 Sum_probs=36.7
Q ss_pred CCCCcc--hhhhhHHHHHHHHHHHHHHHH-hcccchhHHHHHHHHHHHHHHHHHHHHH---hC-CCccccccCCchhHHH
Q 011031 311 PFEPEG--LLSTISAILSGTIGIHYGHVL-IHFKGHSARLKHWVSMGFGLLIIAIILH---FT-NAIPINKQLYSFSYVC 383 (495)
Q Consensus 311 ~fDPEG--lLStipai~~~llG~~aG~~L-~~~~~~~~r~~~ll~~G~~llilG~ll~---~~-~~~PiNK~LWT~SfVL 383 (495)
+.||-+ +++|+--+.+.+.=..|-+-+ + ++++++.+.++...+++.+.-..++ +. ..+-++.+.+.++|-+
T Consensus 134 ~~~~~~lpllnT~iLL~Ss~tv~~A~~a~~~--~~~~~~~~~~L~~Ti~LG~~F~~lQ~~Ey~~~~f~~~~~~ygS~ff~ 211 (273)
T 1qle_C 134 TFDPWHLPLINTLILLLSGVAVTWAHHAFVL--EGDRKTTINGLIVAVILGVCFTGLQAYEYSHAAFGLADTVYAGAFYM 211 (273)
T ss_dssp CCCTTTHHHHHHHHHHHHHHHHHHHHHHHHH--TCCHHHHHHHTHHHHTHHHHHHHHHHHHGGGCSCCSSSCHHHHHHHH
T ss_pred cCChhhHHHHHHHHHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCcCHHHHHHHH
Confidence 456643 455533333333323333333 2 3445556667666666655544443 22 1345667777666666
Q ss_pred HHH
Q 011031 384 FTA 386 (495)
Q Consensus 384 ~Ta 386 (495)
.|+
T Consensus 212 lTG 214 (273)
T 1qle_C 212 ATG 214 (273)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 3
>1m56_C Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} SCOP: f.25.1.1 PDB: 1m57_C*
Probab=14.49 E-value=6e+02 Score=24.39 Aligned_cols=45 Identities=9% Similarity=0.190 Sum_probs=24.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHh---C-CCccccccCCchhHHHHHH
Q 011031 342 GHSARLKHWVSMGFGLLIIAIILHF---T-NAIPINKQLYSFSYVCFTA 386 (495)
Q Consensus 342 ~~~~r~~~ll~~G~~llilG~ll~~---~-~~~PiNK~LWT~SfVL~Ta 386 (495)
+++++.+.++...+++.+.-..++. . ..+-++.+.+.++|-+.|+
T Consensus 159 ~~~~~~~~~L~~Ti~LG~~F~~lQ~~Ey~~~~f~~~~~~ygS~ff~lTG 207 (266)
T 1m56_C 159 NNRRDVAWGLALAIALGALFTVFQAYEYSHAAFGFAGNIYGANFFMATG 207 (266)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCSSSSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH
Confidence 3445566666666666555444432 1 2345666666666655543
No 4
>1jb0_J Photosystem 1 reaction centre subunit IX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.18.1 PDB: 3pcq_J*
Probab=13.18 E-value=1.4e+02 Score=21.24 Aligned_cols=22 Identities=23% Similarity=0.188 Sum_probs=19.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHh
Q 011031 317 LLSTISAILSGTIGIHYGHVLI 338 (495)
Q Consensus 317 lLStipai~~~llG~~aG~~L~ 338 (495)
-|||-|-+++..+++.||-++.
T Consensus 7 yLstAPVla~~w~~~tAg~lIE 28 (41)
T 1jb0_J 7 YLSTAPVLAAIWMTITAGILIE 28 (41)
T ss_dssp HTTBHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHH
Confidence 4899999999999999998763
No 5
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=11.66 E-value=9.9e+02 Score=23.50 Aligned_cols=46 Identities=9% Similarity=-0.135 Sum_probs=27.0
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHH
Q 011031 315 EGLLSTISAILSGTIGIHYGHVLIHFKGHSARLKHWVSMGFGLLIIAIIL 364 (495)
Q Consensus 315 EGlLStipai~~~llG~~aG~~L~~~~~~~~r~~~ll~~G~~llilG~ll 364 (495)
-|++.++..+...+.....|.+..+..+ ++ +.+..+.++..++.++
T Consensus 56 ~g~~~~~~~~~~~~~~~~~G~l~dr~~g-~r---~~~~~~~~~~~~~~~~ 101 (524)
T 2xut_A 56 AKDVFHSFVIGVYFFPLLGGWIADRFFG-KY---NTILWLSLIYCVGHAF 101 (524)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHTTSSC-SH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc-ch---HHHHHHHHHHHHHHHH
Confidence 3677788888888777888877654312 22 2344455555555444
No 6
>1v54_C Cytochrome C oxidase polypeptide III; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.25.1.1 PDB: 1v55_C* 2dyr_C* 2eij_C* 2eik_C* 2eil_C* 2eim_C* 2ein_C* 2y69_C* 2ybb_N* 2zxw_C* 3abk_C* 3abl_C* 3abm_C* 3ag1_C* 3ag2_C* 3ag3_C* 3ag4_C* 3asn_C* 3aso_C* 2occ_C* ...
Probab=10.29 E-value=6.6e+02 Score=24.01 Aligned_cols=72 Identities=19% Similarity=0.253 Sum_probs=33.0
Q ss_pred CCCcc--hhhhhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHh---C-CCccccccCCchhHHHHH
Q 011031 312 FEPEG--LLSTISAILSGTIGIHYGHVLIHFKGHSARLKHWVSMGFGLLIIAIILHF---T-NAIPINKQLYSFSYVCFT 385 (495)
Q Consensus 312 fDPEG--lLStipai~~~llG~~aG~~L~~~~~~~~r~~~ll~~G~~llilG~ll~~---~-~~~PiNK~LWT~SfVL~T 385 (495)
.||-+ +++|+--+.+...=..|-+-++ ++++++.+.++...+++.+.-..++. . ..+-++.+.+.++|-+.|
T Consensus 124 ~~~~~~pllnT~iLL~Ss~t~~~A~~a~~--~~~~~~~~~~L~~T~~LG~~F~~~Q~~Ey~~~~f~~~~~~ygS~ff~lT 201 (261)
T 1v54_C 124 LNPLEVPLLNTSVLLASGVSITWAHHSLM--EGDRKHMLQALFITITLGVYFTLLQASEYYEAPFTISDGVYGSTFFVAT 201 (261)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHHHHHHHH--TTBHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCTTSHHHHHHHHHHH
T ss_pred CChHhHHHHHHHHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHH
Confidence 46543 4555333333332223333333 34455566666666666555444432 1 123455555555554444
No 7
>3mk7_A Cytochrome C oxidase, CBB3-type, subunit N; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=10.15 E-value=1.4e+03 Score=23.75 Aligned_cols=109 Identities=15% Similarity=0.111 Sum_probs=55.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhcccc--hh---HHHHHHHHHHHHHHHHHHHHHhC-CCccccccCCchhHHH------H
Q 011031 317 LLSTISAILSGTIGIHYGHVLIHFKG--HS---ARLKHWVSMGFGLLIIAIILHFT-NAIPINKQLYSFSYVC------F 384 (495)
Q Consensus 317 lLStipai~~~llG~~aG~~L~~~~~--~~---~r~~~ll~~G~~llilG~ll~~~-~~~PiNK~LWT~SfVL------~ 384 (495)
+-++.+.+..+-.|+..=.++..-.. .+ +...+|...++.+..+|.+.+.- ...|+|-.+=-.-||. +
T Consensus 271 ~f~~~t~~i~vPt~i~vf~w~~Tl~~~~~~~~~~~~~~~~~~fi~~f~~gG~tG~~la~~~vd~~~H~T~~vvaHfH~~l 350 (474)
T 3mk7_A 271 LGMVMSLILLAPSWGGMINGMMTLSGAWHKLRSDPILRFLVVSLAFYGMSTFEGPMMAIKTVNALSHYTDWTIGHVHAGA 350 (474)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHGGGTTGGGHHHHCHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTBSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCChhHHHHHHHHHHHHHHHHHHHHHcchhhhhhcccceeehHHHHHHH
Confidence 33444444444455555555543322 11 12345555555555555554321 1244554443333331 3
Q ss_pred HHHHHHHHHHHHHHHHH-hcCc--------cchhhHHHHhchhHHHHHHHh
Q 011031 385 TAGAAGIVFSALYVLMD-VWEL--------RTPFLFLKWIGMNAMLVFVLG 426 (495)
Q Consensus 385 TaG~a~llLa~~y~liD-v~~~--------~~~~~pf~~~GmNai~iYv~s 426 (495)
..|..+.+++.+|+..- ..+. -++...+..+|+|-.+. -+|
T Consensus 351 ~gg~~f~~~~~~y~~~P~~~g~~~~~~~~l~~~~Fwl~~iG~~l~f~-~~~ 400 (474)
T 3mk7_A 351 LGWVAMVSIGALYHLVPKVFGREQMHSIGLINTHFWLATIGTVLYIA-SMW 400 (474)
T ss_dssp HHTHHHHHHHHHHHHHHHHTTCSSCSCSHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 45677888888887664 3333 12344677789998763 444
No 8
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=9.93 E-value=1.2e+02 Score=24.07 Aligned_cols=29 Identities=24% Similarity=0.501 Sum_probs=24.8
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHHHhhcc
Q 011031 93 SPWNGCTLADFVMPFFLFIVGVAIALALK 121 (495)
Q Consensus 93 a~W~G~t~aDlVfP~FlFivGvSi~ls~~ 121 (495)
=+|+-+...-|||-..+|++|+.+-+|-+
T Consensus 11 YDY~tLRiGGLifA~vLfi~GI~iilS~K 39 (72)
T 2jo1_A 11 YDYQSLQIGGLVIAGILFILGILIVLSRR 39 (72)
T ss_dssp CSTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHhhccchHHHHHHHHHHHHHHHcCc
Confidence 35666778889999999999999999975
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=9.84 E-value=9.6e+02 Score=22.75 Aligned_cols=45 Identities=16% Similarity=0.159 Sum_probs=29.7
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHH
Q 011031 315 EGLLSTISAILSGTIGIHYGHVLIHFKGHSARLKHWVSMGFGLLIIAIIL 364 (495)
Q Consensus 315 EGlLStipai~~~llG~~aG~~L~~~~~~~~r~~~ll~~G~~llilG~ll 364 (495)
-|++.++..+...+....+|.+..+.. + ++.+..|.++..+|.++
T Consensus 64 ~g~~~~~~~~~~~~~~~~~G~l~dr~g--~---r~~l~~~~~~~~~~~~~ 108 (451)
T 1pw4_A 64 LGFALSGISIAYGFSKFIMGSVSDRSN--P---RVFLPAGLILAAAVMLF 108 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSC--H---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhcC--c---hHHHHHHHHHHHHHHHH
Confidence 578888888888888888888765432 2 23455555555555544
No 10
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=8.52 E-value=4e+02 Score=18.98 Aligned_cols=12 Identities=17% Similarity=0.030 Sum_probs=6.9
Q ss_pred HHHHHHHHhcCc
Q 011031 480 GVVAGILHRLGI 491 (495)
Q Consensus 480 ~lia~~L~rkkI 491 (495)
.++.+++.|||+
T Consensus 29 ~~~~~~~RRr~~ 40 (44)
T 2ks1_B 29 LGIGLFMRRRHI 40 (44)
T ss_dssp HHHHHHHHTTTC
T ss_pred HHHHHHhhhhHh
Confidence 344556666665
Done!