Query 011031
Match_columns 495
No_of_seqs 191 out of 580
Neff 5.5
Searched_HMMs 13730
Date Mon Mar 25 19:22:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011031.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011031hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v54c_ f.25.1.1 (C:) Mitochon 23.2 1.4E+02 0.01 26.4 8.9 75 311-386 121-200 (259)
2 d1jb0j_ f.23.18.1 (J:) Subunit 19.6 37 0.0027 22.4 2.8 22 317-338 7-28 (41)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 11.2 4.4E+02 0.032 22.5 12.1 49 96-148 54-106 (447)
4 d1pw4a_ f.38.1.1 (A:) Glycerol 9.3 4.4E+02 0.032 22.5 8.4 26 315-340 61-86 (447)
5 d1axda1 a.45.1.1 (A:81-210) Cl 5.4 1.2E+02 0.0084 22.8 1.7 23 90-112 69-95 (129)
6 d1fftc_ f.25.1.1 (C:) Cytochro 4.7 3.8E+02 0.028 21.7 4.8 18 369-386 109-126 (185)
7 d3dtua1 f.24.1.1 (A:14-551) Ba 4.6 1.2E+03 0.091 22.1 12.1 107 316-422 333-456 (538)
8 d1m56c_ f.25.1.1 (C:) Bacteria 4.5 9.3E+02 0.068 20.4 10.3 18 369-386 189-206 (265)
9 d2r6gf1 e.70.1.1 (F:13-260) Ma 3.6 1.1E+03 0.078 20.1 7.3 31 412-444 55-86 (248)
10 d2r6gg1 f.58.1.1 (G:7-296) Mal 3.6 4.3E+02 0.031 22.4 4.4 32 318-349 85-116 (290)
No 1
>d1v54c_ f.25.1.1 (C:) Mitochondrial cytochrome c oxidase, subunit III {Cow (Bos taurus) [TaxId: 9913]}
Probab=23.20 E-value=1.4e+02 Score=26.38 Aligned_cols=75 Identities=12% Similarity=0.222 Sum_probs=37.9
Q ss_pred CCCCcchhhhhHHHHHHHHHHHHHHHHhc-ccchhHHHHHHHHHHHHHHHHHHHHHhC----CCccccccCCchhHHHHH
Q 011031 311 PFEPEGLLSTISAILSGTIGIHYGHVLIH-FKGHSARLKHWVSMGFGLLIIAIILHFT----NAIPINKQLYSFSYVCFT 385 (495)
Q Consensus 311 ~fDPEGlLStipai~~~llG~~aG~~L~~-~~~~~~r~~~ll~~G~~llilG~ll~~~----~~~PiNK~LWT~SfVL~T 385 (495)
+.||.++ ..++.++...-|+.+..-... +++++++.++++...+++.++-...+.. ..+-++.+.+.++|-+.|
T Consensus 121 ~~~~~~l-pllnT~vLl~Ss~t~~~A~~~~~~~~~~~~~~~l~~t~~lg~~Fl~~q~~Ey~~~~~~~~~~~~gS~ff~lT 199 (259)
T d1v54c_ 121 PLNPLEV-PLLNTSVLLASGVSITWAHHSLMEGDRKHMLQALFITITLGVYFTLLQASEYYEAPFTISDGVYGSTFFVAT 199 (259)
T ss_dssp CCCTTSH-HHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCTTSHHHHHHHHHHH
T ss_pred ccchhhh-HHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCCccCCCcchHHHHHH
Confidence 3466543 344445555555544433222 2344555566666666665554444321 235566666666665555
Q ss_pred H
Q 011031 386 A 386 (495)
Q Consensus 386 a 386 (495)
+
T Consensus 200 G 200 (259)
T d1v54c_ 200 G 200 (259)
T ss_dssp H
T ss_pred H
Confidence 4
No 2
>d1jb0j_ f.23.18.1 (J:) Subunit IX of photosystem I reaction centre, PsaJ {Synechococcus elongatus [TaxId: 32046]}
Probab=19.56 E-value=37 Score=22.42 Aligned_cols=22 Identities=23% Similarity=0.188 Sum_probs=19.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHh
Q 011031 317 LLSTISAILSGTIGIHYGHVLI 338 (495)
Q Consensus 317 lLStipai~~~llG~~aG~~L~ 338 (495)
-|||-|-+++.++++.||-++.
T Consensus 7 ylstAPVla~~w~~~tAG~lIE 28 (41)
T d1jb0j_ 7 YLSTAPVLAAIWMTITAGILIE 28 (41)
T ss_dssp HTTBHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHHHH
Confidence 4899999999999999997763
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=11.18 E-value=4.4e+02 Score=22.54 Aligned_cols=49 Identities=8% Similarity=0.030 Sum_probs=25.6
Q ss_pred CCCchhhHHHHHHHHHHHHHH--Hhhc--cccCChhHHHHHHHHHHHHHHHHHHHHh
Q 011031 96 NGCTLADFVMPFFLFIVGVAI--ALAL--KKVPKINGAVKKIIFRTLKLLFWGIILQ 148 (495)
Q Consensus 96 ~G~t~aDlVfP~FlFivGvSi--~ls~--~~~~~~~~~~~kil~Rsl~Lf~iGl~l~ 148 (495)
.|++.+|.-.-.-++.+|..+ +++= ..+.. .|+++.-+..+..++.++.
T Consensus 54 ~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g----~r~~~~~~~~~~~~~~~~~ 106 (447)
T d1pw4a_ 54 QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSN----PRVFLPAGLILAAAVMLFM 106 (447)
T ss_dssp STTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSC----HHHHHHHHHHHHHHHHHHH
T ss_pred hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----chHHHHHHHHHHHHHHhhc
Confidence 478877665555445444443 2221 11222 2566666666666666654
No 4
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=9.28 E-value=4.4e+02 Score=22.53 Aligned_cols=26 Identities=19% Similarity=0.022 Sum_probs=20.5
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHhcc
Q 011031 315 EGLLSTISAILSGTIGIHYGHVLIHF 340 (495)
Q Consensus 315 EGlLStipai~~~llG~~aG~~L~~~ 340 (495)
-|++.++..+...+.....|.+..+.
T Consensus 61 ~g~~~s~~~~~~~~~~~~~G~l~Dr~ 86 (447)
T d1pw4a_ 61 LGFALSGISIAYGFSKFIMGSVSDRS 86 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 47888888888888888888877543
No 5
>d1axda1 a.45.1.1 (A:81-210) Class phi GST {Maize (Zea mays), type I [TaxId: 4577]}
Probab=5.43 E-value=1.2e+02 Score=22.82 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=15.9
Q ss_pred cccCCC---CCCchhhHH-HHHHHHHH
Q 011031 90 IDHSPW---NGCTLADFV-MPFFLFIV 112 (495)
Q Consensus 90 l~Ha~W---~G~t~aDlV-fP~FlFiv 112 (495)
+.+.+| +.+|+||+. +|.+..+.
T Consensus 69 L~~~~~l~Gd~~TlADi~~~~~~~~~~ 95 (129)
T d1axda1 69 LTKCKYLAGDFLSLADLNHVSVTLCLF 95 (129)
T ss_dssp HHHCSSSSSSSCCHHHHTTHHHHHHHT
T ss_pred HccccccccCccccccHHHHHHHHHHH
Confidence 455566 668999995 67666554
No 6
>d1fftc_ f.25.1.1 (C:) Cytochrome O ubiquinol oxidase, subunit III {Escherichia coli [TaxId: 562]}
Probab=4.67 E-value=3.8e+02 Score=21.68 Aligned_cols=18 Identities=0% Similarity=0.169 Sum_probs=12.8
Q ss_pred CccccccCCchhHHHHHH
Q 011031 369 AIPINKQLYSFSYVCFTA 386 (495)
Q Consensus 369 ~~PiNK~LWT~SfVL~Ta 386 (495)
....+-+.+.+.|-+.|+
T Consensus 109 g~~~~~~~~~s~fy~lTG 126 (185)
T d1fftc_ 109 GMGPDRSGFLSAFFALVG 126 (185)
T ss_dssp SCSCCCCSTTTHHHHHHH
T ss_pred ccccccccchhhHHHHHH
Confidence 466778888877766664
No 7
>d3dtua1 f.24.1.1 (A:14-551) Bacterial aa3 type cytochrome c oxidase subunit I {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=4.61 E-value=1.2e+03 Score=22.08 Aligned_cols=107 Identities=11% Similarity=0.182 Sum_probs=52.1
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhcc---cchhHHHHHHHHHHHHHHHHHHHHHh-CCCccccccCCchhHH------HHH
Q 011031 316 GLLSTISAILSGTIGIHYGHVLIHF---KGHSARLKHWVSMGFGLLIIAIILHF-TNAIPINKQLYSFSYV------CFT 385 (495)
Q Consensus 316 GlLStipai~~~llG~~aG~~L~~~---~~~~~r~~~ll~~G~~llilG~ll~~-~~~~PiNK~LWT~SfV------L~T 385 (495)
-..++.+.+..+-.|+..-.++..- +.+.+....+....+.+.++|.+-.. ....|+|-.+=-.-|| .+.
T Consensus 333 ~~f~~~T~~IaiPs~i~vfnwl~Tl~gg~~~~~~p~l~~l~fi~~F~iGG~tGi~la~~~~d~~~HdTy~VvaHFH~v~~ 412 (538)
T d3dtua1 333 SYFMMATMVIAVPTGIKIFSWIATMWGGSIELKTPMLWALGFLFLFTVGGVTGIVLSQASVDRYYHDTYYVVAHFHYVMS 412 (538)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHTTBHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcHHHHHHHHHHHHHHhccccccccchhhhhhcccceeeeeeeeeeec
Confidence 3444444444445555555554321 11112222233333333344433321 1136777776666666 444
Q ss_pred HHHHHHHHHHHHHHHH-hcCcc------chhhHHHHhchhHHHH
Q 011031 386 AGAAGIVFSALYVLMD-VWELR------TPFLFLKWIGMNAMLV 422 (495)
Q Consensus 386 aG~a~llLa~~y~liD-v~~~~------~~~~pf~~~GmNai~i 422 (495)
.|..+-+++.+|+..- ..+++ ++-..+..+|+|-.+.
T Consensus 413 ~g~v~~~~a~~y~w~Pk~tGr~~~~~l~~~hfwl~~iG~~l~f~ 456 (538)
T d3dtua1 413 LGAVFGIFAGIYFWIGKMSGRQYPEWAGKLHFWMMFVGANLTFF 456 (538)
T ss_dssp TTHHHHHHHHHHHHHHHHHSBCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777776664 33331 2233556679986654
No 8
>d1m56c_ f.25.1.1 (C:) Bacterial aa3 type cytochrome c oxidase subunit III {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=4.47 E-value=9.3e+02 Score=20.36 Aligned_cols=18 Identities=17% Similarity=0.311 Sum_probs=10.8
Q ss_pred CccccccCCchhHHHHHH
Q 011031 369 AIPINKQLYSFSYVCFTA 386 (495)
Q Consensus 369 ~~PiNK~LWT~SfVL~Ta 386 (495)
.+.++-+.+.++|-+.|+
T Consensus 189 ~~~~~~~~~gs~ff~lTG 206 (265)
T d1m56c_ 189 AFGFAGNIYGANFFMATG 206 (265)
T ss_dssp SSCSSSSHHHHHHHHHHH
T ss_pred CCCcccchhHHHHHHHHH
Confidence 455666666666655554
No 9
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=3.60 E-value=1.1e+03 Score=20.10 Aligned_cols=31 Identities=23% Similarity=0.313 Sum_probs=18.6
Q ss_pred HHHhchhHHHHHHHhhhhhHhhh-hcceeecCCC
Q 011031 412 LKWIGMNAMLVFVLGAQGILAGF-VNGWYYKNPD 444 (495)
Q Consensus 412 f~~~GmNai~iYv~s~~~i~~~~-l~~~~~~~~~ 444 (495)
+.+.|+=-|++|++- -++... +....+..++
T Consensus 55 yi~PG~~~l~~Fvi~--Pi~yT~~iaFTNy~tgh 86 (248)
T d2r6gf1 55 YVYPGMAGMGLFVLF--PLVCTIAIAFTNYSSTN 86 (248)
T ss_dssp HHHHHHHHHHHHTHH--HHHHHHHGGGBCCSSTT
T ss_pred hhhhHHHHHHHHHHH--hheeEEEEEEEEcCCCc
Confidence 345699888988877 455443 4433444443
No 10
>d2r6gg1 f.58.1.1 (G:7-296) Maltose transport system permease protein MalG {Escherichia coli [TaxId: 562]}
Probab=3.58 E-value=4.3e+02 Score=22.42 Aligned_cols=32 Identities=13% Similarity=-0.002 Sum_probs=23.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHhcccchhHHHHH
Q 011031 318 LSTISAILSGTIGIHYGHVLIHFKGHSARLKH 349 (495)
Q Consensus 318 LStipai~~~llG~~aG~~L~~~~~~~~r~~~ 349 (495)
++.+.++.++++|+.++..+.+.+...++...
T Consensus 85 ~a~~~~~~~~~ig~~~a~~l~r~~~~~~~~~~ 116 (290)
T d2r6gg1 85 VAGISAIGIVALSTTCAYAFARMRFPGKATLL 116 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCTTSHHHH
T ss_pred hhhhhhhhhhhHHHHHHHHHHHhhhhhHHHHH
Confidence 45667778888999999998766655555443
Done!