BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011033
(495 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 76/164 (46%), Gaps = 23/164 (14%)
Query: 187 LEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSL----FVWYCPKLESIAERLD 242
L +L IR CP LT ELP L S + L +L W + S+ +
Sbjct: 152 LRELSIRACPELT------ELPEPLASTDASGEHQGLVNLQSLRLEWT--GIRSLPASIA 203
Query: 243 NNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPE--GGLPCAKLSKLRI 300
N +L+++ I L L +H+L +L+E+++ C L ++P GG A L +L +
Sbjct: 204 NLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGR--APLKRLIL 260
Query: 301 YGCERLEALPKGLHNLTSLQQLTIGG-----ELPSLEEDGLPTN 339
C L LP +H LT L++L + G LPSL LP N
Sbjct: 261 KDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ-LPAN 303
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 77/199 (38%), Gaps = 35/199 (17%)
Query: 245 TSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCE 304
LET+ ++ L+ LP+ + +L +L+E+ I C L PE L+ G
Sbjct: 127 AGLETLTLAR-NPLRALPASIASLNRLRELSIRACPELTELPE------PLASTDASGEH 179
Query: 305 RLEALPKGLHNLTSLQQLTIGGELPSLEEDG---LPTNLHSLHIWGNMEIWKSMIER-GR 360
+GL NL SL+ LE G LP ++ +L +++I S + G
Sbjct: 180 ------QGLVNLQSLR----------LEWTGIRSLPASIANLQNLKSLKIRNSPLSALGP 223
Query: 361 GFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSSIVD 420
H L L + GC P+ R A L L + D NL L I
Sbjct: 224 AIHHLPKLEELDLRGCTALRNYPPIFGGR--------APLKRLILKDCSNLLTLPLDIHR 275
Query: 421 LQNLTHLNLVDCPKLKYFP 439
L L L+L C L P
Sbjct: 276 LTQLEKLDLRGCVNLSRLP 294
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 99/223 (44%), Gaps = 27/223 (12%)
Query: 46 QLCELSCRLEYLRLSYCE--GLVKLPQXXXXXXXXREIEIYKCSSLVSFP-EVALPSKLK 102
Q + + RL +L+ + GL +LP + + + + L + P +A ++L+
Sbjct: 95 QFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLAR-NPLRALPASIASLNRLR 153
Query: 103 IIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTY-LAGVQ-LPRSLKRLDILSCDN 160
+ I C L LPE + T++S E + + ++L G++ LP S+ L N
Sbjct: 154 ELSIRACPELTELPEP-LASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQ-----N 207
Query: 161 IRTLTVEEGIQXXXXXXXNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLP 220
+++L + + LE+L++R C +L +N P + G P
Sbjct: 208 LKSLKIRNSPLSALGPAI---HHLPKLEELDLRGCTAL-----RNYPP-----IFGGRAP 254
Query: 221 PSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPS 263
LK L + C L ++ + T LE +++ GC NL LPS
Sbjct: 255 --LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295
>pdb|3EZS|A Chain A, Crystal Structure Of Aminotransferase Aspb (Np_207418.1)
From Helicobacter Pylori 26695 At 2.19 A Resolution
pdb|3EZS|B Chain B, Crystal Structure Of Aminotransferase Aspb (Np_207418.1)
From Helicobacter Pylori 26695 At 2.19 A Resolution
Length = 376
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 301 YGCERLEALPKGLHNLTSLQQLTIG---GELPSLEEDGLPTNLHSLHIWGNMEIWKSMIE 357
Y ERL AL K + L IG E P +D L + HSL+I+ +S+
Sbjct: 7 YPFERLRALLKEITPKKRGLDLGIGEPQFETPKFIQDALKNHTHSLNIYPKSAFEESLRA 66
Query: 358 RGRGFHRFSSLRHLTIEGCDDDMVS 382
RGF + R IE +++++S
Sbjct: 67 AQRGFFK----RRFKIELKENELIS 87
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 92/223 (41%), Gaps = 50/223 (22%)
Query: 247 LETINISGCE--NLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCE 304
L T+ +SG + +L +LP GL L +L + P G L KL I+G +
Sbjct: 83 LRTLEVSGNQLTSLPVLPPGLLELSIFSN----PLTHLPALPSG------LCKLWIFGNQ 132
Query: 305 --RLEALPKGLHNLT-SLQQLTIGGELPSLEEDGLPTNLHSLHIWGNMEIWKSMIERGRG 361
L LP GL L+ S QL LP+L P+ L L + N M+ G
Sbjct: 133 LTSLPVLPPGLQELSVSDNQL---ASLPAL-----PSELCKLWAYNNQLTSLPMLPSG-- 182
Query: 362 FHRFSSLRHLTIEGCDDDMVSFP----------LEDKRLGTALPLPASLTSLRIVDFPNL 411
L+ L++ D+ + S P + RL + LP+ L L +
Sbjct: 183 ------LQELSV--SDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSG---- 230
Query: 412 ERLSSSIVDLQNLTHLNLVDCPKLKYFPEKGLPSSLLQLSIYR 454
RL+S V L L +V +L P LPS LL LS+YR
Sbjct: 231 NRLTSLPVLPSELKEL-MVSGNRLTSLPM--LPSGLLSLSVYR 270
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 240 RLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAK 294
+ D T L+T+ C N+ ++P+ L + + + ++ NLV GG P +K
Sbjct: 269 KFDEETFLKTLQDYKCTNVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSK 323
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 58/123 (47%), Gaps = 15/123 (12%)
Query: 270 QLQEIEIWECENLVSFPEGGLPCAKLSKLRIYG--CERLEALPKGLH-NLTSLQQLTIGG 326
L+E+E+ EN+VS E G L LR G RL+ +P G+ L++L +L I
Sbjct: 57 HLEELEL--NENIVSAVEPG-AFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISE 113
Query: 327 ELPSLEEDGLPT---NLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSF 383
+ D + NL SL + N ++ S R F +SL LT+E C ++ S
Sbjct: 114 NKIVILLDYMFQDLYNLKSLEVGDNDLVYISH----RAFSGLNSLEQLTLEKC--NLTSI 167
Query: 384 PLE 386
P E
Sbjct: 168 PTE 170
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,847,751
Number of Sequences: 62578
Number of extensions: 555724
Number of successful extensions: 1062
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1044
Number of HSP's gapped (non-prelim): 21
length of query: 495
length of database: 14,973,337
effective HSP length: 103
effective length of query: 392
effective length of database: 8,527,803
effective search space: 3342898776
effective search space used: 3342898776
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)