Query 011033
Match_columns 495
No_of_seqs 201 out of 2374
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 07:21:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011033.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011033hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.4E-30 3.1E-35 286.1 22.6 426 15-483 114-584 (968)
2 PLN00113 leucine-rich repeat r 100.0 2.3E-30 5E-35 284.5 22.6 226 221-459 356-585 (968)
3 PLN03210 Resistant to P. syrin 99.9 1.3E-24 2.8E-29 239.5 25.5 343 43-440 553-911 (1153)
4 KOG4194 Membrane glycoprotein 99.9 6.7E-27 1.5E-31 221.8 4.7 335 52-456 78-427 (873)
5 KOG4194 Membrane glycoprotein 99.9 1.3E-26 2.9E-31 219.8 4.8 358 20-453 79-447 (873)
6 PLN03210 Resistant to P. syrin 99.9 8.4E-24 1.8E-28 233.1 25.0 343 11-414 550-909 (1153)
7 KOG0444 Cytoskeletal regulator 99.9 4.5E-26 9.8E-31 217.8 -6.6 365 17-459 5-376 (1255)
8 KOG0618 Serine/threonine phosp 99.9 4.1E-25 9E-30 220.3 -5.1 427 10-480 36-510 (1081)
9 KOG0444 Cytoskeletal regulator 99.9 5E-25 1.1E-29 210.7 -4.5 345 11-416 24-380 (1255)
10 KOG0472 Leucine-rich repeat pr 99.9 8.2E-25 1.8E-29 199.0 -10.0 236 12-280 61-308 (565)
11 KOG0472 Leucine-rich repeat pr 99.8 2.6E-24 5.6E-29 195.8 -11.8 258 20-326 46-306 (565)
12 KOG0618 Serine/threonine phosp 99.8 4.5E-21 9.7E-26 191.8 -3.6 368 14-434 63-488 (1081)
13 PRK15387 E3 ubiquitin-protein 99.6 6.5E-15 1.4E-19 152.0 16.1 253 101-433 203-456 (788)
14 PRK15387 E3 ubiquitin-protein 99.6 2E-14 4.4E-19 148.4 15.5 253 53-376 202-455 (788)
15 PRK15370 E3 ubiquitin-protein 99.5 4.1E-14 8.9E-19 147.0 10.5 121 19-164 178-298 (754)
16 KOG4237 Extracellular matrix p 99.5 1E-15 2.2E-20 140.0 -4.9 102 21-134 69-173 (498)
17 PRK15370 E3 ubiquitin-protein 99.4 4.9E-13 1.1E-17 139.0 12.2 220 52-326 178-397 (754)
18 KOG4237 Extracellular matrix p 99.4 1.7E-14 3.6E-19 132.1 -5.1 391 3-455 75-498 (498)
19 KOG0617 Ras suppressor protein 99.2 6E-14 1.3E-18 114.0 -7.2 182 243-462 31-216 (264)
20 KOG4341 F-box protein containi 99.2 2.4E-13 5.3E-18 125.5 -4.5 136 221-376 294-436 (483)
21 KOG4341 F-box protein containi 99.2 1.2E-12 2.7E-17 121.0 -3.4 279 20-326 139-435 (483)
22 KOG0617 Ras suppressor protein 99.1 1.5E-12 3.2E-17 106.0 -4.1 148 221-376 33-183 (264)
23 KOG4658 Apoptotic ATPase [Sign 99.1 3.6E-11 7.9E-16 127.2 4.9 107 17-134 543-651 (889)
24 cd00116 LRR_RI Leucine-rich re 99.1 3.3E-11 7.1E-16 115.8 1.8 190 237-432 73-288 (319)
25 cd00116 LRR_RI Leucine-rich re 99.0 3.6E-11 7.9E-16 115.5 0.6 255 221-481 23-318 (319)
26 KOG4658 Apoptotic ATPase [Sign 99.0 4.9E-10 1.1E-14 118.8 7.4 92 9-110 561-653 (889)
27 KOG3207 Beta-tubulin folding c 98.9 5.3E-11 1.2E-15 110.9 -3.0 204 221-431 121-335 (505)
28 PF14580 LRR_9: Leucine-rich r 98.7 7.1E-09 1.5E-13 88.2 3.1 108 14-136 14-124 (175)
29 PF14580 LRR_9: Leucine-rich r 98.7 5.6E-09 1.2E-13 88.8 2.2 136 336-491 17-158 (175)
30 KOG3207 Beta-tubulin folding c 98.7 4.1E-09 8.9E-14 98.6 1.0 239 242-495 118-376 (505)
31 KOG2120 SCF ubiquitin ligase, 98.6 9.9E-10 2.1E-14 97.6 -4.6 61 221-281 313-375 (419)
32 KOG0532 Leucine-rich repeat (L 98.6 1.4E-09 2.9E-14 104.9 -4.6 187 248-455 78-270 (722)
33 PRK15386 type III secretion pr 98.5 6.8E-07 1.5E-11 85.5 10.7 93 241-347 48-141 (426)
34 COG4886 Leucine-rich repeat (L 98.5 1.1E-07 2.4E-12 94.2 5.5 175 241-434 112-289 (394)
35 KOG1259 Nischarin, modulator o 98.5 3.9E-08 8.4E-13 87.7 1.3 126 266-407 281-408 (490)
36 KOG1909 Ran GTPase-activating 98.5 8.6E-09 1.9E-13 93.8 -3.4 221 221-457 30-282 (382)
37 KOG1259 Nischarin, modulator o 98.4 8.4E-08 1.8E-12 85.6 1.4 203 44-304 174-410 (490)
38 COG4886 Leucine-rich repeat (L 98.4 4.7E-07 1E-11 89.7 5.4 190 249-457 97-289 (394)
39 KOG2120 SCF ubiquitin ligase, 98.3 9.7E-09 2.1E-13 91.4 -6.2 176 246-455 186-373 (419)
40 PRK15386 type III secretion pr 98.3 5.1E-06 1.1E-10 79.6 10.5 131 221-376 52-187 (426)
41 PF13855 LRR_8: Leucine rich r 98.3 9.1E-07 2E-11 61.6 4.0 58 19-86 1-59 (61)
42 KOG0532 Leucine-rich repeat (L 98.2 3.6E-08 7.9E-13 95.3 -4.9 184 256-458 60-247 (722)
43 PF13855 LRR_8: Leucine rich r 98.2 2.1E-06 4.5E-11 59.8 3.7 57 52-110 1-60 (61)
44 KOG1909 Ran GTPase-activating 98.1 3.2E-07 6.9E-12 83.8 -0.9 186 182-376 27-251 (382)
45 PLN03150 hypothetical protein; 98.1 8.9E-06 1.9E-10 84.8 7.7 68 52-119 442-510 (623)
46 PLN03150 hypothetical protein; 98.0 1.5E-05 3.3E-10 83.1 7.6 105 247-351 420-528 (623)
47 KOG2982 Uncharacterized conser 97.9 1.3E-05 2.7E-10 72.0 4.5 188 243-440 69-267 (418)
48 KOG1947 Leucine rich repeat pr 97.9 1.1E-06 2.3E-11 89.7 -3.2 214 221-462 214-444 (482)
49 PF12799 LRR_4: Leucine Rich r 97.9 1.4E-05 3E-10 51.0 2.9 38 53-92 2-39 (44)
50 KOG0531 Protein phosphatase 1, 97.7 5.9E-06 1.3E-10 82.1 -0.2 214 221-457 95-317 (414)
51 KOG3665 ZYG-1-like serine/thre 97.7 2.2E-05 4.8E-10 81.8 3.2 128 19-157 122-259 (699)
52 KOG0531 Protein phosphatase 1, 97.7 6E-06 1.3E-10 82.0 -1.1 212 221-456 72-288 (414)
53 KOG1947 Leucine rich repeat pr 97.6 8.3E-06 1.8E-10 83.1 -2.1 115 47-161 183-308 (482)
54 KOG3665 ZYG-1-like serine/thre 97.5 6.4E-05 1.4E-09 78.4 4.0 108 17-135 146-260 (699)
55 PF12799 LRR_4: Leucine Rich r 97.5 0.0001 2.3E-09 46.9 3.4 39 76-116 1-40 (44)
56 KOG1859 Leucine-rich repeat pr 97.5 4.6E-06 1E-10 83.4 -5.3 106 335-458 184-292 (1096)
57 KOG1859 Leucine-rich repeat pr 97.4 1.1E-05 2.4E-10 80.7 -3.1 101 338-456 164-265 (1096)
58 KOG2982 Uncharacterized conser 97.3 0.00015 3.2E-09 65.3 3.2 206 267-489 69-295 (418)
59 KOG2123 Uncharacterized conser 96.8 2.8E-05 6E-10 69.2 -6.3 101 17-131 17-123 (388)
60 COG5238 RNA1 Ran GTPase-activa 96.8 0.00032 7E-09 62.4 0.2 82 221-303 30-130 (388)
61 KOG1644 U2-associated snRNP A' 96.8 0.002 4.4E-08 55.0 4.6 102 52-158 42-150 (233)
62 KOG1644 U2-associated snRNP A' 96.5 0.0052 1.1E-07 52.5 5.5 41 334-375 109-149 (233)
63 KOG4579 Leucine-rich repeat (L 96.3 0.00027 5.9E-09 56.2 -3.0 34 52-86 77-110 (177)
64 COG5238 RNA1 Ran GTPase-activa 96.2 0.0077 1.7E-07 53.9 4.7 39 72-110 88-131 (388)
65 KOG2739 Leucine-rich acidic nu 95.9 0.0038 8.1E-08 55.6 1.6 85 49-136 40-127 (260)
66 PF13306 LRR_5: Leucine rich r 95.7 0.03 6.5E-07 45.4 6.2 105 12-134 5-112 (129)
67 KOG2123 Uncharacterized conser 95.1 0.001 2.2E-08 59.5 -4.6 99 52-154 19-123 (388)
68 KOG2739 Leucine-rich acidic nu 95.0 0.014 3E-07 52.1 2.1 102 54-159 20-127 (260)
69 KOG4579 Leucine-rich repeat (L 94.9 0.0012 2.6E-08 52.7 -4.3 101 223-326 29-132 (177)
70 PF13306 LRR_5: Leucine rich r 94.7 0.17 3.7E-06 40.8 7.7 57 241-301 8-66 (129)
71 KOG3864 Uncharacterized conser 94.5 0.0061 1.3E-07 52.2 -1.3 61 52-112 125-189 (221)
72 KOG3864 Uncharacterized conser 94.5 0.0089 1.9E-07 51.2 -0.4 88 339-436 102-190 (221)
73 PF00560 LRR_1: Leucine Rich R 93.8 0.031 6.7E-07 29.4 0.9 17 54-71 2-18 (22)
74 PF13504 LRR_7: Leucine rich r 93.1 0.062 1.4E-06 26.2 1.3 11 423-433 2-12 (17)
75 PF00560 LRR_1: Leucine Rich R 92.6 0.084 1.8E-06 27.7 1.5 20 294-314 1-20 (22)
76 KOG3763 mRNA export factor TAP 90.3 0.14 3E-06 50.8 1.4 69 17-92 216-286 (585)
77 smart00367 LRR_CC Leucine-rich 87.9 0.37 7.9E-06 26.5 1.5 15 422-436 2-16 (26)
78 smart00370 LRR Leucine-rich re 77.5 1.8 3.8E-05 23.6 1.6 20 421-441 1-20 (26)
79 smart00369 LRR_TYP Leucine-ric 77.5 1.8 3.8E-05 23.6 1.6 20 421-441 1-20 (26)
80 smart00364 LRR_BAC Leucine-ric 64.5 4.3 9.3E-05 22.3 1.1 17 423-440 3-19 (26)
81 PF13516 LRR_6: Leucine Rich r 53.6 8.3 0.00018 20.3 1.1 12 445-456 2-13 (24)
82 KOG3763 mRNA export factor TAP 50.6 8.8 0.00019 38.6 1.6 43 98-140 243-285 (585)
83 KOG0473 Leucine-rich repeat pr 49.9 1.1 2.3E-05 39.7 -4.2 84 15-110 38-122 (326)
84 KOG0473 Leucine-rich repeat pr 47.9 2 4.2E-05 38.2 -3.0 69 12-91 58-126 (326)
85 PF05725 FNIP: FNIP Repeat; I 43.1 39 0.00085 21.1 3.2 29 318-346 13-42 (44)
86 smart00365 LRR_SD22 Leucine-ri 40.4 22 0.00049 19.5 1.5 11 52-62 2-12 (26)
87 smart00368 LRR_RI Leucine rich 33.2 29 0.00062 19.2 1.3 11 52-62 2-12 (28)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=1.4e-30 Score=286.13 Aligned_cols=426 Identities=17% Similarity=0.164 Sum_probs=199.5
Q ss_pred ccccccccEEecccccccc-cccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCC
Q 011033 15 LQDICSLRRLTITSCPKLQ-SLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFP 93 (495)
Q Consensus 15 ~~~~~~L~~L~l~~c~~l~-~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~ 93 (495)
+..+.+|++|+++++ .++ .+|. +.+ ++|++|++++|...+.+|..++.+++|++|++++|.....+|
T Consensus 114 ~~~l~~L~~L~Ls~n-~l~~~~p~-------~~l----~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p 181 (968)
T PLN00113 114 FTTSSSLRYLNLSNN-NFTGSIPR-------GSI----PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIP 181 (968)
T ss_pred hccCCCCCEEECcCC-ccccccCc-------ccc----CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCC
Confidence 336667777777764 333 2222 123 556666666554434455555555566666665553333444
Q ss_pred C-CCCCCCCcEEEEeCCCCCCccccccccCCCCCccEEecccCccccccccc-cCCCCccEEEeccCCCccccccccccc
Q 011033 94 E-VALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGV-QLPRSLKRLDILSCDNIRTLTVEEGIQ 171 (495)
Q Consensus 94 ~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~ 171 (495)
. ++.+++|++|++++|.....+|..+..+ ++|+.|++++|.....+|.. ..+++|+.|+++++.....+ |..+.
T Consensus 182 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~--p~~l~ 257 (968)
T PLN00113 182 NSLTNLTSLEFLTLASNQLVGQIPRELGQM--KSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPI--PSSLG 257 (968)
T ss_pred hhhhhCcCCCeeeccCCCCcCcCChHHcCc--CCccEEECcCCccCCcCChhHhcCCCCCEEECcCceecccc--ChhHh
Confidence 3 5555555555555555444455554444 55555555554322233332 44455555555543211111 21111
Q ss_pred cCCC---------C----ccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchhhh
Q 011033 172 SSSS---------S----SSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIA 238 (495)
Q Consensus 172 ~~~~---------~----~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 238 (495)
.-.+ . ........++|+.|++++|. +... .|..+ .. .++|+.|++++|...+.+|
T Consensus 258 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~-----~p~~~-----~~-l~~L~~L~l~~n~~~~~~~ 325 (968)
T PLN00113 258 NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS-LSGE-----IPELV-----IQ-LQNLEILHLFSNNFTGKIP 325 (968)
T ss_pred CCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCe-eccC-----CChhH-----cC-CCCCcEEECCCCccCCcCC
Confidence 0000 0 00000112334444444421 1100 01000 01 1345555555444444444
Q ss_pred hhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCC------------------------CCCCCCC
Q 011033 239 ERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPE------------------------GGLPCAK 294 (495)
Q Consensus 239 ~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~------------------------~~~~~~~ 294 (495)
..+..+++|+.|++++|.....+|..++.+++|+.|++++|.....+|. .+..+++
T Consensus 326 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~ 405 (968)
T PLN00113 326 VALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRS 405 (968)
T ss_pred hhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCC
Confidence 4444555555555554443334444444445555555544432223333 3333444
Q ss_pred CcEEEecCccccccccccccCCCCcceeEecc-ccccccCC--CCCCccceeEeeccCccchhhhcccccCCCCCccceE
Q 011033 295 LSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSLEED--GLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHL 371 (495)
Q Consensus 295 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L 371 (495)
|+.|++++|.....+|..+..+++|+.|++++ .+....+. ..+++|+.|++++|.... ..+. ....++|+.|
T Consensus 406 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~-~~p~----~~~~~~L~~L 480 (968)
T PLN00113 406 LRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFG-GLPD----SFGSKRLENL 480 (968)
T ss_pred CCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeee-ecCc----ccccccceEE
Confidence 44444444443333444444444444444444 22221111 234455555555554221 1111 1123455556
Q ss_pred Eeeccccccc-cchhhhccccccCCCCCCCceeeecccccccccccccccCCCCCeEeccCCCCCCCCCCC-CCccccce
Q 011033 372 TIEGCDDDMV-SFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSSIVDLQNLTHLNLVDCPKLKYFPEK-GLPSSLLQ 449 (495)
Q Consensus 372 ~l~~~~~~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~L~~ 449 (495)
++++| .+. .++.. +..+++|+.|++++|.-...+|..+..+++|++|++++|.-...+|.. ..+++|++
T Consensus 481 ~ls~n--~l~~~~~~~-------~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 551 (968)
T PLN00113 481 DLSRN--QFSGAVPRK-------LGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQ 551 (968)
T ss_pred ECcCC--ccCCccChh-------hhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCE
Confidence 66555 322 22221 124567888888886555567777788888888888886543445442 23678888
Q ss_pred eeccCCchhHHhhhcCCCeeeecceEEeccCccc
Q 011033 450 LSIYRCPLMEEKCRKDGGLLTHIPSVQIDLNGFL 483 (495)
Q Consensus 450 L~l~~c~~l~~~~~~~~~~i~~~~~~~i~~~~~~ 483 (495)
|++++|.....+-.... .+..+..+++.+|.+.
T Consensus 552 L~Ls~N~l~~~~p~~l~-~l~~L~~l~ls~N~l~ 584 (968)
T PLN00113 552 LDLSQNQLSGEIPKNLG-NVESLVQVNISHNHLH 584 (968)
T ss_pred EECCCCcccccCChhHh-cCcccCEEeccCCcce
Confidence 88888865443322222 3555666667666554
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=2.3e-30 Score=284.47 Aligned_cols=226 Identities=17% Similarity=0.125 Sum_probs=175.9
Q ss_pred CCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEe
Q 011033 221 PSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRI 300 (495)
Q Consensus 221 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l 300 (495)
++|+.|++++|.....+|.++..+++|+.|++.+|.....+|..+..+++|+.|++++|.....+|..+..+++|+.|++
T Consensus 356 ~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 435 (968)
T PLN00113 356 NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDI 435 (968)
T ss_pred CCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEEC
Confidence 56777777766666666666667777777777776655566777888899999999998655567777888899999999
Q ss_pred cCccccccccccccCCCCcceeEecc-cc-ccccCCCCCCccceeEeeccCccchhhhcccccCCCCCccceEEeecccc
Q 011033 301 YGCERLEALPKGLHNLTSLQQLTIGG-EL-PSLEEDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDD 378 (495)
Q Consensus 301 ~~~~~~~~~~~~l~~l~~L~~L~l~~-~l-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 378 (495)
++|.....+|..+..+++|+.|++++ .+ ..+|.....++|+.|++++|.. ....+. .+.++++|+.|++++|
T Consensus 436 s~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l-~~~~~~---~~~~l~~L~~L~Ls~N-- 509 (968)
T PLN00113 436 SNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQF-SGAVPR---KLGSLSELMQLKLSEN-- 509 (968)
T ss_pred cCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCcc-CCccCh---hhhhhhccCEEECcCC--
Confidence 99987777777788899999999998 44 3444444567999999999984 334443 5788999999999998
Q ss_pred ccc-cchhhhccccccCCCCCCCceeeecccccccccccccccCCCCCeEeccCCCCCCCCCCC-CCccccceeeccCCc
Q 011033 379 DMV-SFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSSIVDLQNLTHLNLVDCPKLKYFPEK-GLPSSLLQLSIYRCP 456 (495)
Q Consensus 379 ~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~c~ 456 (495)
.+. .+|... ..+++|+.|++++|.-...+|..+..+++|++|++++|+....+|.. ..+++|++|++++|+
T Consensus 510 ~l~~~~p~~~-------~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~ 582 (968)
T PLN00113 510 KLSGEIPDEL-------SSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNH 582 (968)
T ss_pred cceeeCChHH-------cCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCc
Confidence 444 445443 35679999999997666678889999999999999998765667764 347899999999997
Q ss_pred hhH
Q 011033 457 LME 459 (495)
Q Consensus 457 ~l~ 459 (495)
...
T Consensus 583 l~~ 585 (968)
T PLN00113 583 LHG 585 (968)
T ss_pred cee
Confidence 543
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.93 E-value=1.3e-24 Score=239.47 Aligned_cols=343 Identities=21% Similarity=0.297 Sum_probs=254.1
Q ss_pred HHhhhhhcccccceeeccccc------CCccccccccCCC-CccEEEEeCCCCCCCCCCCCCCCCCcEEEEeCCCCCCcc
Q 011033 43 QQQQLCELSCRLEYLRLSYCE------GLVKLPQSSLSLS-SLREIEIYKCSSLVSFPEVALPSKLKIIEIEGCDALKSL 115 (495)
Q Consensus 43 ~~~~l~~~~~~L~~L~ls~~~------~l~~l~~~~~~l~-~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~ 115 (495)
.|.++ ++|+.|.+.++. ....+|..+..++ +|+.|.+.++ .++.+|....+.+|+.|+++++. +..+
T Consensus 553 aF~~m----~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~-~l~~lP~~f~~~~L~~L~L~~s~-l~~L 626 (1153)
T PLN03210 553 AFKGM----RNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKY-PLRCMPSNFRPENLVKLQMQGSK-LEKL 626 (1153)
T ss_pred HHhcC----ccccEEEEecccccccccceeecCcchhhcCcccEEEEecCC-CCCCCCCcCCccCCcEEECcCcc-cccc
Confidence 57777 888888886542 1124555555553 5888888886 67777764567888888888876 6667
Q ss_pred ccccccCCCCCccEEecccCccccccccccCCCCccEEEeccCCCccccccccccccCCCCccCcccCccccceeeecCC
Q 011033 116 PEAWMCDTNSSLETLYIEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDC 195 (495)
Q Consensus 116 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 195 (495)
+..+... ++|+.|+++++..++.+|....+++|+.|++.+|..+..+ |..+. ..++|+.|++++|
T Consensus 627 ~~~~~~l--~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~l--p~si~-----------~L~~L~~L~L~~c 691 (1153)
T PLN03210 627 WDGVHSL--TGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVEL--PSSIQ-----------YLNKLEDLDMSRC 691 (1153)
T ss_pred ccccccC--CCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCcccc--chhhh-----------ccCCCCEEeCCCC
Confidence 7665544 7888888888777777887777888888888888777766 55442 2456888888888
Q ss_pred CCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEE
Q 011033 196 PSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIE 275 (495)
Q Consensus 196 ~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~ 275 (495)
+.++.+ +...-.++|+.|++++|..+..+|.. .++|+.|+++++ .+..+|..+ .+++|+.|.
T Consensus 692 ~~L~~L-------------p~~i~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n-~i~~lP~~~-~l~~L~~L~ 753 (1153)
T PLN03210 692 ENLEIL-------------PTGINLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDET-AIEEFPSNL-RLENLDELI 753 (1153)
T ss_pred CCcCcc-------------CCcCCCCCCCEEeCCCCCCccccccc---cCCcCeeecCCC-ccccccccc-ccccccccc
Confidence 887776 33323478888888888877776643 467888888874 466676654 577888888
Q ss_pred eeCCCCcc------ccC-CCCCCCCCCcEEEecCccccccccccccCCCCcceeEecc--ccccccCCCCCCccceeEee
Q 011033 276 IWECENLV------SFP-EGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG--ELPSLEEDGLPTNLHSLHIW 346 (495)
Q Consensus 276 l~~~~~l~------~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~--~l~~~~~~~~~~~L~~L~l~ 346 (495)
+.++.... .++ .....+++|+.|++++|..+..+|..+.++++|+.|++++ .+..+|....+++|++|+++
T Consensus 754 l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls 833 (1153)
T PLN03210 754 LCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLS 833 (1153)
T ss_pred ccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECC
Confidence 87653211 111 1222346899999999988888888889999999999987 67777776678899999999
Q ss_pred ccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccCCCCCCCceeeecccccccccccccccCCCCCe
Q 011033 347 GNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSSIVDLQNLTH 426 (495)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~ 426 (495)
+|..+... + ....+|+.|++++| .+..+|... ..+++|+.|++++|++++.+|..+..+++|+.
T Consensus 834 ~c~~L~~~-p------~~~~nL~~L~Ls~n--~i~~iP~si-------~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~ 897 (1153)
T PLN03210 834 GCSRLRTF-P------DISTNISDLNLSRT--GIEEVPWWI-------EKFSNLSFLDMNGCNNLQRVSLNISKLKHLET 897 (1153)
T ss_pred CCCccccc-c------ccccccCEeECCCC--CCccChHHH-------hcCCCCCEEECCCCCCcCccCcccccccCCCe
Confidence 99865421 1 12368999999997 788888765 35679999999999999999988889999999
Q ss_pred EeccCCCCCCCCCC
Q 011033 427 LNLVDCPKLKYFPE 440 (495)
Q Consensus 427 L~l~~c~~l~~l~~ 440 (495)
+++++|.+++.++.
T Consensus 898 L~l~~C~~L~~~~l 911 (1153)
T PLN03210 898 VDFSDCGALTEASW 911 (1153)
T ss_pred eecCCCcccccccC
Confidence 99999998886543
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.93 E-value=6.7e-27 Score=221.77 Aligned_cols=335 Identities=19% Similarity=0.237 Sum_probs=160.9
Q ss_pred cccceeecccccCCccc-cccccCCCCccEEEEeCCCCCCCCCCCCCC-CCCcEEEEeCCCCCCccccccccCCCCCccE
Q 011033 52 CRLEYLRLSYCEGLVKL-PQSSLSLSSLREIEIYKCSSLVSFPEVALP-SKLKIIEIEGCDALKSLPEAWMCDTNSSLET 129 (495)
Q Consensus 52 ~~L~~L~ls~~~~l~~l-~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 129 (495)
+.-+.|++++| .+..+ +..|-++++|+++++..| .++.+|.++.. ..|+.|++.+|...+.-...+... +.|++
T Consensus 78 ~~t~~LdlsnN-kl~~id~~~f~nl~nLq~v~l~~N-~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l--~alrs 153 (873)
T KOG4194|consen 78 SQTQTLDLSNN-KLSHIDFEFFYNLPNLQEVNLNKN-ELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSAL--PALRS 153 (873)
T ss_pred cceeeeecccc-ccccCcHHHHhcCCcceeeeeccc-hhhhcccccccccceeEEeeeccccccccHHHHHhH--hhhhh
Confidence 45566777776 44433 234567777777777765 66677765543 347777777765322222333222 66777
Q ss_pred EecccCccccccccccCC--CCccEEEeccCCCccccccccccccCCCCccCcccCccccceeeecCCCCCcccccCCCC
Q 011033 130 LYIEHCRTLTYLAGVQLP--RSLKRLDILSCDNIRTLTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNEL 207 (495)
Q Consensus 130 L~l~~~~~l~~~~~~~~~--~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 207 (495)
|+++. +.+.+++....+ .++++|++++ +.++.+ ..+-
T Consensus 154 lDLSr-N~is~i~~~sfp~~~ni~~L~La~-N~It~l--~~~~------------------------------------- 192 (873)
T KOG4194|consen 154 LDLSR-NLISEIPKPSFPAKVNIKKLNLAS-NRITTL--ETGH------------------------------------- 192 (873)
T ss_pred hhhhh-chhhcccCCCCCCCCCceEEeecc-cccccc--cccc-------------------------------------
Confidence 77766 345555444222 3566666655 234333 1100
Q ss_pred cccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcc-cccCCCCCCccEEEeeCCCCccccC
Q 011033 208 PATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKIL-PSGLHNLGQLQEIEIWECENLVSFP 286 (495)
Q Consensus 208 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~l~~l~ 286 (495)
...+ .+|..|.+++|......+..|.++++|+.|++.+| .++.+ ...|.++++|+.|.+..| .+..+.
T Consensus 193 --------F~~l-nsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN-~irive~ltFqgL~Sl~nlklqrN-~I~kL~ 261 (873)
T KOG4194|consen 193 --------FDSL-NSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRN-RIRIVEGLTFQGLPSLQNLKLQRN-DISKLD 261 (873)
T ss_pred --------cccc-chheeeecccCcccccCHHHhhhcchhhhhhcccc-ceeeehhhhhcCchhhhhhhhhhc-Cccccc
Confidence 0001 24555555544444444445555555555555552 23322 233455555555555554 333333
Q ss_pred C-CCCCCCCCcEEEecCccccccccccccCCCCcceeEecc-ccccccCC--CCCCccceeEeeccCccchhhhcccccC
Q 011033 287 E-GGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSLEED--GLPTNLHSLHIWGNMEIWKSMIERGRGF 362 (495)
Q Consensus 287 ~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 362 (495)
+ .+..+.++++|++..|+....-..++.++++|+.|+++. .|..+... ..+++|++|+++.|. ++..-+ ..+
T Consensus 262 DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~-i~~l~~---~sf 337 (873)
T KOG4194|consen 262 DGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNR-ITRLDE---GSF 337 (873)
T ss_pred CcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccc-cccCCh---hHH
Confidence 3 333445555555555442222223455555555555555 44444332 334555555555554 221111 134
Q ss_pred CCCCccceEEeeccccccccchhhhccccccCCCCCCCceeeeccccccccc----ccccccCCCCCeEeccCCCCCCCC
Q 011033 363 HRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERL----SSSIVDLQNLTHLNLVDCPKLKYF 438 (495)
Q Consensus 363 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l----~~~~~~~~~L~~L~l~~c~~l~~l 438 (495)
..++.|++|.+++| .++.+.... +..+.+|++|||++ +.+... ...+..+++|+.|++.| ++++.|
T Consensus 338 ~~L~~Le~LnLs~N--si~~l~e~a------f~~lssL~~LdLr~-N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I 407 (873)
T KOG4194|consen 338 RVLSQLEELNLSHN--SIDHLAEGA------FVGLSSLHKLDLRS-NELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSI 407 (873)
T ss_pred HHHHHhhhhccccc--chHHHHhhH------HHHhhhhhhhcCcC-CeEEEEEecchhhhccchhhhheeecC-ceeeec
Confidence 44555555555554 444443322 23344555555555 333221 11344455555555555 345555
Q ss_pred CCCCC--ccccceeeccCCc
Q 011033 439 PEKGL--PSSLLQLSIYRCP 456 (495)
Q Consensus 439 ~~~~~--~~~L~~L~l~~c~ 456 (495)
+...+ ++.|+.|++.+++
T Consensus 408 ~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 408 PKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred chhhhccCcccceecCCCCc
Confidence 54322 4555555555554
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.93 E-value=1.3e-26 Score=219.77 Aligned_cols=358 Identities=17% Similarity=0.204 Sum_probs=236.7
Q ss_pred cccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCC--CCC
Q 011033 20 SLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE--VAL 97 (495)
Q Consensus 20 ~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~--~~~ 97 (495)
.-+.|++++ +++.++... .|-++ ++|+.+.+.+| .+..+|...+...+|+.|+|.+| .+.++.. +..
T Consensus 79 ~t~~Ldlsn-Nkl~~id~~----~f~nl----~nLq~v~l~~N-~Lt~IP~f~~~sghl~~L~L~~N-~I~sv~se~L~~ 147 (873)
T KOG4194|consen 79 QTQTLDLSN-NKLSHIDFE----FFYNL----PNLQEVNLNKN-ELTRIPRFGHESGHLEKLDLRHN-LISSVTSEELSA 147 (873)
T ss_pred ceeeeeccc-cccccCcHH----HHhcC----Ccceeeeeccc-hhhhcccccccccceeEEeeecc-ccccccHHHHHh
Confidence 456799999 789988775 68888 99999999997 78999986667778999999997 7777654 778
Q ss_pred CCCCcEEEEeCCCCCCccccccccCCCCCccEEecccCccccccccc--cCCCCccEEEeccCCCccccccccccccCCC
Q 011033 98 PSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGV--QLPRSLKRLDILSCDNIRTLTVEEGIQSSSS 175 (495)
Q Consensus 98 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 175 (495)
++.|++||++.|. +..++..-+.. -.++++|++.+ +.++.+... ..+.+|..|.+++ +.++.+ |....
T Consensus 148 l~alrslDLSrN~-is~i~~~sfp~-~~ni~~L~La~-N~It~l~~~~F~~lnsL~tlkLsr-NrittL--p~r~F---- 217 (873)
T KOG4194|consen 148 LPALRSLDLSRNL-ISEIPKPSFPA-KVNIKKLNLAS-NRITTLETGHFDSLNSLLTLKLSR-NRITTL--PQRSF---- 217 (873)
T ss_pred Hhhhhhhhhhhch-hhcccCCCCCC-CCCceEEeecc-ccccccccccccccchheeeeccc-Cccccc--CHHHh----
Confidence 8999999999977 55555433322 17899999998 467776655 4456788888887 355555 32110
Q ss_pred CccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCC
Q 011033 176 SSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGC 255 (495)
Q Consensus 176 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 255 (495)
-.. +.|+.|++.+|..-..-...|.++++|+.|.+.+|
T Consensus 218 ------k~L------------------------------------~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN 255 (873)
T KOG4194|consen 218 ------KRL------------------------------------PKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRN 255 (873)
T ss_pred ------hhc------------------------------------chhhhhhccccceeeehhhhhcCchhhhhhhhhhc
Confidence 001 45555555554432222334666777777777764
Q ss_pred CCCCccc-ccCCCCCCccEEEeeCCCCccccCC-CCCCCCCCcEEEecCccccccccccccCCCCcceeEecc-cccccc
Q 011033 256 ENLKILP-SGLHNLGQLQEIEIWECENLVSFPE-GGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSLE 332 (495)
Q Consensus 256 ~~~~~l~-~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~ 332 (495)
.+..+. ..|..+.++++|+++.| .+..+.. ....++.|+.|++++|....--++.++..++|+.|+|+. .+..++
T Consensus 256 -~I~kL~DG~Fy~l~kme~l~L~~N-~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~ 333 (873)
T KOG4194|consen 256 -DISKLDDGAFYGLEKMEHLNLETN-RLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLD 333 (873)
T ss_pred -CcccccCcceeeecccceeecccc-hhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCC
Confidence 333332 34556677777777776 4444443 445566777777777654443445666677777777777 666666
Q ss_pred CCC--CCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccCCCCCCCceeeeccccc
Q 011033 333 EDG--LPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPN 410 (495)
Q Consensus 333 ~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 410 (495)
++. ....|++|.++.|. ++.... ..+..+++|+.|++++| .+.-...++ ...+..+++|++|++.+ ++
T Consensus 334 ~~sf~~L~~Le~LnLs~Ns-i~~l~e---~af~~lssL~~LdLr~N--~ls~~IEDa---a~~f~gl~~LrkL~l~g-Nq 403 (873)
T KOG4194|consen 334 EGSFRVLSQLEELNLSHNS-IDHLAE---GAFVGLSSLHKLDLRSN--ELSWCIEDA---AVAFNGLPSLRKLRLTG-NQ 403 (873)
T ss_pred hhHHHHHHHhhhhcccccc-hHHHHh---hHHHHhhhhhhhcCcCC--eEEEEEecc---hhhhccchhhhheeecC-ce
Confidence 553 35677777777776 332222 35777788888888876 332222211 12334567888888888 78
Q ss_pred cccccc-ccccCCCCCeEeccCCCCCCCCCCCCC-ccccceeecc
Q 011033 411 LERLSS-SIVDLQNLTHLNLVDCPKLKYFPEKGL-PSSLLQLSIY 453 (495)
Q Consensus 411 l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~-~~~L~~L~l~ 453 (495)
++.||. .+.++++|++|++.+ +.+.+|....+ .-.|++|.+.
T Consensus 404 lk~I~krAfsgl~~LE~LdL~~-NaiaSIq~nAFe~m~Lk~Lv~n 447 (873)
T KOG4194|consen 404 LKSIPKRAFSGLEALEHLDLGD-NAIASIQPNAFEPMELKELVMN 447 (873)
T ss_pred eeecchhhhccCcccceecCCC-Ccceeecccccccchhhhhhhc
Confidence 888887 778888888888888 45777655333 2256666443
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=8.4e-24 Score=233.11 Aligned_cols=343 Identities=23% Similarity=0.358 Sum_probs=180.3
Q ss_pred cCccccccccccEEeccccc-----ccc-cccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEe
Q 011033 11 HNELLQDICSLRRLTITSCP-----KLQ-SLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIY 84 (495)
Q Consensus 11 ~~~~~~~~~~L~~L~l~~c~-----~l~-~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~ 84 (495)
....|.+|++|+.|.+.... ... .+|.+ +..+ +++|+.|.+.++ .+..+|..+ .+.+|++|+++
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~-----~~~l---p~~Lr~L~~~~~-~l~~lP~~f-~~~~L~~L~L~ 619 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEG-----FDYL---PPKLRLLRWDKY-PLRCMPSNF-RPENLVKLQMQ 619 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecCcc-----hhhc---CcccEEEEecCC-CCCCCCCcC-CccCCcEEECc
Confidence 34557778888888776521 011 22222 4333 234666666665 445666544 45666666666
Q ss_pred CCCCCCCCCC-CCCCCCCcEEEEeCCCCCCccccccccCCCCCccEEecccCccccccccc-cCCCCccEEEeccCCCcc
Q 011033 85 KCSSLVSFPE-VALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGV-QLPRSLKRLDILSCDNIR 162 (495)
Q Consensus 85 ~~~~l~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~ 162 (495)
+| .+..++. +..+++|+.|+++++..+..+|. +... ++|+.|++.+|..+..+|.. ..+++|+.|++++|..++
T Consensus 620 ~s-~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l--~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~ 695 (1153)
T PLN03210 620 GS-KLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMA--TNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLE 695 (1153)
T ss_pred Cc-cccccccccccCCCCCEEECCCCCCcCcCCc-cccC--CcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcC
Confidence 65 4555543 55566666666666655555553 2222 56666666666666555544 455666666666666665
Q ss_pred ccccccccccCCCCccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcC
Q 011033 163 TLTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLD 242 (495)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 242 (495)
.+ |..+ ..++|+.|++++|..++.+ + ..+++|+.|++.++. +..+|..+
T Consensus 696 ~L--p~~i------------~l~sL~~L~Lsgc~~L~~~-------------p--~~~~nL~~L~L~~n~-i~~lP~~~- 744 (1153)
T PLN03210 696 IL--PTGI------------NLKSLYRLNLSGCSRLKSF-------------P--DISTNISWLDLDETA-IEEFPSNL- 744 (1153)
T ss_pred cc--CCcC------------CCCCCCEEeCCCCCCcccc-------------c--cccCCcCeeecCCCc-cccccccc-
Confidence 55 4322 1345666666666555443 1 122456666666444 33344332
Q ss_pred CCCCCcEEeeeCCCCC------Ccc-cccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCccccccccccccC
Q 011033 243 NNTSLETINISGCENL------KIL-PSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHN 315 (495)
Q Consensus 243 ~~~~L~~L~l~~~~~~------~~l-~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 315 (495)
.+++|+.|.+.++... ..+ +......++|+.|++++|+.+..+|..+..+++|+.|++++|..++.+|... .
T Consensus 745 ~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~ 823 (1153)
T PLN03210 745 RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-N 823 (1153)
T ss_pred cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-C
Confidence 3455555555442210 000 1111223456666666665555555555555666666666665555555443 4
Q ss_pred CCCcceeEecc--ccccccCCCCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhcccccc
Q 011033 316 LTSLQQLTIGG--ELPSLEEDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTA 393 (495)
Q Consensus 316 l~~L~~L~l~~--~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 393 (495)
+++|+.|++++ .+..+|. .+.+|++|++++|. +. .++. .+..+++|+.|++++| ..+..++...
T Consensus 824 L~sL~~L~Ls~c~~L~~~p~--~~~nL~~L~Ls~n~-i~-~iP~---si~~l~~L~~L~L~~C-~~L~~l~~~~------ 889 (1153)
T PLN03210 824 LESLESLDLSGCSRLRTFPD--ISTNISDLNLSRTG-IE-EVPW---WIEKFSNLSFLDMNGC-NNLQRVSLNI------ 889 (1153)
T ss_pred ccccCEEECCCCCccccccc--cccccCEeECCCCC-Cc-cChH---HHhcCCCCCEEECCCC-CCcCccCccc------
Confidence 55666666655 4444432 23456666666654 22 1222 3555666666666665 3455554433
Q ss_pred CCCCCCCceeeeccccccccc
Q 011033 394 LPLPASLTSLRIVDFPNLERL 414 (495)
Q Consensus 394 ~~~~~~L~~L~l~~~~~l~~l 414 (495)
..+++|+.+++++|.+++.+
T Consensus 890 -~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 890 -SKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred -ccccCCCeeecCCCcccccc
Confidence 13455666666666665543
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.89 E-value=4.5e-26 Score=217.80 Aligned_cols=365 Identities=17% Similarity=0.232 Sum_probs=246.2
Q ss_pred ccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCCCC
Q 011033 17 DICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVA 96 (495)
Q Consensus 17 ~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~ 96 (495)
-++..|-+++++ +.+ ..+.||....++ .+++-|.|.. ..+..+|..++.+.+|++|.+++|...+-.+.+.
T Consensus 5 VLpFVrGvDfsg-NDF---sg~~FP~~v~qM----t~~~WLkLnr-t~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs 75 (1255)
T KOG0444|consen 5 VLPFVRGVDFSG-NDF---SGDRFPHDVEQM----TQMTWLKLNR-TKLEQVPEELSRLQKLEHLSMAHNQLISVHGELS 75 (1255)
T ss_pred ccceeecccccC-CcC---CCCcCchhHHHh----hheeEEEech-hhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhc
Confidence 356677778887 333 233455568888 8888888887 4778888888888888888888874333334477
Q ss_pred CCCCCcEEEEeCCC-CCCccccccccCCCCCccEEecccCccccccccc-cCCCCccEEEeccCCCccccccccccccCC
Q 011033 97 LPSKLKIIEIEGCD-ALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGV-QLPRSLKRLDILSCDNIRTLTVEEGIQSSS 174 (495)
Q Consensus 97 ~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 174 (495)
.++.|+++.+.+|. .-..+|.+++.+ ..|..|++++ +.++..|.. ....++-.|++++ +++..+ |..+.
T Consensus 76 ~Lp~LRsv~~R~N~LKnsGiP~diF~l--~dLt~lDLSh-NqL~EvP~~LE~AKn~iVLNLS~-N~IetI--Pn~lf--- 146 (1255)
T KOG0444|consen 76 DLPRLRSVIVRDNNLKNSGIPTDIFRL--KDLTILDLSH-NQLREVPTNLEYAKNSIVLNLSY-NNIETI--PNSLF--- 146 (1255)
T ss_pred cchhhHHHhhhccccccCCCCchhccc--ccceeeecch-hhhhhcchhhhhhcCcEEEEccc-CccccC--CchHH---
Confidence 78888888888766 334578888777 7788888888 456666654 4455666677776 355555 43220
Q ss_pred CCccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeC
Q 011033 175 SSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISG 254 (495)
Q Consensus 175 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 254 (495)
-++ ..|-.|+++ +..++.+|+.+..+.+|++|.+++
T Consensus 147 ---------------------inL----------------------tDLLfLDLS-~NrLe~LPPQ~RRL~~LqtL~Ls~ 182 (1255)
T KOG0444|consen 147 ---------------------INL----------------------TDLLFLDLS-NNRLEMLPPQIRRLSMLQTLKLSN 182 (1255)
T ss_pred ---------------------Hhh----------------------HhHhhhccc-cchhhhcCHHHHHHhhhhhhhcCC
Confidence 111 234455666 344566666677777777777777
Q ss_pred CCCCCcc-cccCCCCCCccEEEeeCCC-CccccCCCCCCCCCCcEEEecCccccccccccccCCCCcceeEecc-ccccc
Q 011033 255 CENLKIL-PSGLHNLGQLQEIEIWECE-NLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSL 331 (495)
Q Consensus 255 ~~~~~~l-~~~~~~l~~L~~L~l~~~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~ 331 (495)
|. +..+ -.-+..+++|++|.+++.. .+..+|..+..+.+|..+|++.| .+..+|+.+..+++|+.|++++ .++.+
T Consensus 183 NP-L~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPecly~l~~LrrLNLS~N~iteL 260 (1255)
T KOG0444|consen 183 NP-LNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-NLPIVPECLYKLRNLRRLNLSGNKITEL 260 (1255)
T ss_pred Ch-hhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc-CCCcchHHHhhhhhhheeccCcCceeee
Confidence 53 2111 1223345566666666542 24466766666677777777765 4666777777777788888777 66665
Q ss_pred cCC-CCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccCCCCCCCceeeeccccc
Q 011033 332 EED-GLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPN 410 (495)
Q Consensus 332 ~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 410 (495)
... +....|+.|+++.|+. + ..+. .+.+++.|+.|.+.+|...++.+|...+ .+.+|+++...+ ++
T Consensus 261 ~~~~~~W~~lEtLNlSrNQL-t-~LP~---avcKL~kL~kLy~n~NkL~FeGiPSGIG-------KL~~Levf~aan-N~ 327 (1255)
T KOG0444|consen 261 NMTEGEWENLETLNLSRNQL-T-VLPD---AVCKLTKLTKLYANNNKLTFEGIPSGIG-------KLIQLEVFHAAN-NK 327 (1255)
T ss_pred eccHHHHhhhhhhccccchh-c-cchH---HHhhhHHHHHHHhccCcccccCCccchh-------hhhhhHHHHhhc-cc
Confidence 443 5567788888888762 2 3333 5677788888888887666777777664 566778887777 78
Q ss_pred ccccccccccCCCCCeEeccCCCCCCCCCCC-CCccccceeeccCCchhH
Q 011033 411 LERLSSSIVDLQNLTHLNLVDCPKLKYFPEK-GLPSSLLQLSIYRCPLME 459 (495)
Q Consensus 411 l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~c~~l~ 459 (495)
++-+|.++..|..|+.|.++. +.+-.+|+. -+++.|++|+++.+|++.
T Consensus 328 LElVPEglcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 328 LELVPEGLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred cccCchhhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCcc
Confidence 888888888888888888887 457777775 347888888888887663
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.88 E-value=4.1e-25 Score=220.28 Aligned_cols=427 Identities=20% Similarity=0.251 Sum_probs=265.8
Q ss_pred hcCccccccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCC
Q 011033 10 SHNELLQDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSL 89 (495)
Q Consensus 10 ~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l 89 (495)
.+.++.++...|+.|++++ +.+...|. .+..+ .+|+.|.++.| .+..+|....++.+|++|.|.+| .+
T Consensus 36 ~pl~~~~~~v~L~~l~lsn-n~~~~fp~-----~it~l----~~L~~ln~s~n-~i~~vp~s~~~~~~l~~lnL~~n-~l 103 (1081)
T KOG0618|consen 36 RPLEFVEKRVKLKSLDLSN-NQISSFPI-----QITLL----SHLRQLNLSRN-YIRSVPSSCSNMRNLQYLNLKNN-RL 103 (1081)
T ss_pred CchHHhhheeeeEEeeccc-cccccCCc-----hhhhH----HHHhhcccchh-hHhhCchhhhhhhcchhheeccc-hh
Confidence 3456666666799999999 66766544 58888 99999999997 77899988999999999999886 78
Q ss_pred CCCCC-CCCCCCCcEEEEeCCCCCCccccccccCCCCCccEEecccCcccccccccc-----------------CCCCcc
Q 011033 90 VSFPE-VALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGVQ-----------------LPRSLK 151 (495)
Q Consensus 90 ~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-----------------~~~~L~ 151 (495)
..+|. +..+.+|++|+++.|. +..+|.-+... ..++.+..+++-++..++... ....++
T Consensus 104 ~~lP~~~~~lknl~~LdlS~N~-f~~~Pl~i~~l--t~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~ 180 (1081)
T KOG0618|consen 104 QSLPASISELKNLQYLDLSFNH-FGPIPLVIEVL--TAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLT 180 (1081)
T ss_pred hcCchhHHhhhcccccccchhc-cCCCchhHHhh--hHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhh
Confidence 88885 8889999999999987 56666554433 444555555432221111110 001122
Q ss_pred E-EEeccCCCccccccccccccCCCCccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeec
Q 011033 152 R-LDILSCDNIRTLTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWY 230 (495)
Q Consensus 152 ~-L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 230 (495)
+ +++.++. +...+.... ......++....+..+.+.+ ++++.+...-.... .......+.+|+.++++.
T Consensus 181 ~~ldLr~N~-~~~~dls~~-----~~l~~l~c~rn~ls~l~~~g-~~l~~L~a~~n~l~---~~~~~p~p~nl~~~dis~ 250 (1081)
T KOG0618|consen 181 HQLDLRYNE-MEVLDLSNL-----ANLEVLHCERNQLSELEISG-PSLTALYADHNPLT---TLDVHPVPLNLQYLDISH 250 (1081)
T ss_pred eeeecccch-hhhhhhhhc-----cchhhhhhhhcccceEEecC-cchheeeeccCcce---eeccccccccceeeecch
Confidence 2 3333321 111100000 00011111222333333333 33333311110000 012334456788888885
Q ss_pred CCCchhhhhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCcccccccc
Q 011033 231 CPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALP 310 (495)
Q Consensus 231 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~ 310 (495)
+. +..+|.|+..+.+|+.++..+ +.+..+|..+....+|+.|.+.+| .++.+|+...+..+|++|++..|. +.++|
T Consensus 251 n~-l~~lp~wi~~~~nle~l~~n~-N~l~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~~N~-L~~lp 326 (1081)
T KOG0618|consen 251 NN-LSNLPEWIGACANLEALNANH-NRLVALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQSNN-LPSLP 326 (1081)
T ss_pred hh-hhcchHHHHhcccceEecccc-hhHHhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeeehhcc-ccccc
Confidence 54 445668888888888888877 445677777778888888888887 778888877778889999998874 66666
Q ss_pred cccc-CCC-CcceeEecc-ccccccCC--CCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchh
Q 011033 311 KGLH-NLT-SLQQLTIGG-ELPSLEED--GLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPL 385 (495)
Q Consensus 311 ~~l~-~l~-~L~~L~l~~-~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 385 (495)
+.+. ... +|+.++.+. .+...+.. ...+.|+.|++.+|..-++.++ .+.++++|+.|++++| .+..||+
T Consensus 327 ~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p----~l~~~~hLKVLhLsyN--rL~~fpa 400 (1081)
T KOG0618|consen 327 DNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFP----VLVNFKHLKVLHLSYN--RLNSFPA 400 (1081)
T ss_pred hHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchh----hhccccceeeeeeccc--ccccCCH
Confidence 6332 222 356666655 55555543 3467888888888885444444 4888889999999998 8888888
Q ss_pred hhccccccCCCCCCCceeeecccccccccccc----------------------cccCCCCCeEeccCCCCCCCCCCC-C
Q 011033 386 EDKRLGTALPLPASLTSLRIVDFPNLERLSSS----------------------IVDLQNLTHLNLVDCPKLKYFPEK-G 442 (495)
Q Consensus 386 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~----------------------~~~~~~L~~L~l~~c~~l~~l~~~-~ 442 (495)
.. +..+..|+.|+|++ ++++.+|.. +..++.|+.+|++. ++++.+... .
T Consensus 401 s~------~~kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~-N~L~~~~l~~~ 472 (1081)
T KOG0618|consen 401 SK------LRKLEELEELNLSG-NKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSC-NNLSEVTLPEA 472 (1081)
T ss_pred HH------HhchHHhHHHhccc-chhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEeccc-chhhhhhhhhh
Confidence 65 23556788888888 777766543 44456777777776 456664332 2
Q ss_pred Cc-cccceeeccCCchhHHhhhcCCCeeeecceEEeccC
Q 011033 443 LP-SSLLQLSIYRCPLMEEKCRKDGGLLTHIPSVQIDLN 480 (495)
Q Consensus 443 ~~-~~L~~L~l~~c~~l~~~~~~~~~~i~~~~~~~i~~~ 480 (495)
.+ ++|++|+++|++++.-...... -.+++..++++-+
T Consensus 473 ~p~p~LkyLdlSGN~~l~~d~~~l~-~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 473 LPSPNLKYLDLSGNTRLVFDHKTLK-VLKSLSQMDITLN 510 (1081)
T ss_pred CCCcccceeeccCCcccccchhhhH-HhhhhhheecccC
Confidence 34 7888888888875422222111 2455555555554
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.88 E-value=5e-25 Score=210.70 Aligned_cols=345 Identities=21% Similarity=0.310 Sum_probs=271.5
Q ss_pred cCccccccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCC
Q 011033 11 HNELLQDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLV 90 (495)
Q Consensus 11 ~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~ 90 (495)
+++....|+.++.|.+.+ .++..+|++ ++++ .+|++|.+++| .+.++-..+..++.|+.+.++.| .+.
T Consensus 24 FP~~v~qMt~~~WLkLnr-t~L~~vPeE-----L~~l----qkLEHLs~~HN-~L~~vhGELs~Lp~LRsv~~R~N-~LK 91 (1255)
T KOG0444|consen 24 FPHDVEQMTQMTWLKLNR-TKLEQVPEE-----LSRL----QKLEHLSMAHN-QLISVHGELSDLPRLRSVIVRDN-NLK 91 (1255)
T ss_pred CchhHHHhhheeEEEech-hhhhhChHH-----HHHH----hhhhhhhhhhh-hhHhhhhhhccchhhHHHhhhcc-ccc
Confidence 344556788999999999 789999997 9999 99999999998 55666666888999999999998 443
Q ss_pred --CCCC-CCCCCCCcEEEEeCCCCCCccccccccCCCCCccEEecccCccccccccc--cCCCCccEEEeccCCCccccc
Q 011033 91 --SFPE-VALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGV--QLPRSLKRLDILSCDNIRTLT 165 (495)
Q Consensus 91 --~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~ 165 (495)
.+|. +-.+..|..|++|+|. +..+|..+-.. +++..|++++ +++..+|.. .+++.|-.|++++ +.++.+
T Consensus 92 nsGiP~diF~l~dLt~lDLShNq-L~EvP~~LE~A--Kn~iVLNLS~-N~IetIPn~lfinLtDLLfLDLS~-NrLe~L- 165 (1255)
T KOG0444|consen 92 NSGIPTDIFRLKDLTILDLSHNQ-LREVPTNLEYA--KNSIVLNLSY-NNIETIPNSLFINLTDLLFLDLSN-NRLEML- 165 (1255)
T ss_pred cCCCCchhcccccceeeecchhh-hhhcchhhhhh--cCcEEEEccc-CccccCCchHHHhhHhHhhhcccc-chhhhc-
Confidence 5565 8889999999999987 88999887666 8899999998 568888876 6677888889988 577766
Q ss_pred cccccccCCCCccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCC--CCccEEEeecCCC-chhhhhhcC
Q 011033 166 VEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLP--PSLKSLFVWYCPK-LESIAERLD 242 (495)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~-~~~~~~~~~ 242 (495)
|..+ .....|++|.+++. -+..+ ....+| ++|+.|.+++... +..+|.++.
T Consensus 166 -PPQ~-----------RRL~~LqtL~Ls~N-PL~hf-------------QLrQLPsmtsL~vLhms~TqRTl~N~Ptsld 219 (1255)
T KOG0444|consen 166 -PPQI-----------RRLSMLQTLKLSNN-PLNHF-------------QLRQLPSMTSLSVLHMSNTQRTLDNIPTSLD 219 (1255)
T ss_pred -CHHH-----------HHHhhhhhhhcCCC-hhhHH-------------HHhcCccchhhhhhhcccccchhhcCCCchh
Confidence 5433 22445888888873 33333 111121 5677888876544 457888999
Q ss_pred CCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCccccccccccccCCCCccee
Q 011033 243 NNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQL 322 (495)
Q Consensus 243 ~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 322 (495)
.+.+|..++++. +.+..+|+.+.++++|+.|++++| .++.+........+|++|+++.|+ ++.+|..+..+++|++|
T Consensus 220 ~l~NL~dvDlS~-N~Lp~vPecly~l~~LrrLNLS~N-~iteL~~~~~~W~~lEtLNlSrNQ-Lt~LP~avcKL~kL~kL 296 (1255)
T KOG0444|consen 220 DLHNLRDVDLSE-NNLPIVPECLYKLRNLRRLNLSGN-KITELNMTEGEWENLETLNLSRNQ-LTVLPDAVCKLTKLTKL 296 (1255)
T ss_pred hhhhhhhccccc-cCCCcchHHHhhhhhhheeccCcC-ceeeeeccHHHHhhhhhhccccch-hccchHHHhhhHHHHHH
Confidence 999999999987 668888999999999999999998 777777665666689999999985 88899999999999999
Q ss_pred Eecc---ccccccCC-CCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccCCCCC
Q 011033 323 TIGG---ELPSLEED-GLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPA 398 (495)
Q Consensus 323 ~l~~---~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (495)
.+.+ ....+|.+ +....|+.+..++|. -...++ ++..|..|+.|.+++| .+..+|... .+++
T Consensus 297 y~n~NkL~FeGiPSGIGKL~~Levf~aanN~--LElVPE---glcRC~kL~kL~L~~N--rLiTLPeaI-------HlL~ 362 (1255)
T KOG0444|consen 297 YANNNKLTFEGIPSGIGKLIQLEVFHAANNK--LELVPE---GLCRCVKLQKLKLDHN--RLITLPEAI-------HLLP 362 (1255)
T ss_pred HhccCcccccCCccchhhhhhhHHHHhhccc--cccCch---hhhhhHHHHHhccccc--ceeechhhh-------hhcC
Confidence 8877 55666665 667788888888775 224444 7888899999999887 888888866 5778
Q ss_pred CCceeeeccccccccccc
Q 011033 399 SLTSLRIVDFPNLERLSS 416 (495)
Q Consensus 399 ~L~~L~l~~~~~l~~l~~ 416 (495)
.|++||+.+++++..-|.
T Consensus 363 ~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 363 DLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred CcceeeccCCcCccCCCC
Confidence 899999998888876664
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.86 E-value=8.2e-25 Score=198.99 Aligned_cols=236 Identities=25% Similarity=0.233 Sum_probs=164.7
Q ss_pred CccccccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCC
Q 011033 12 NELLQDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVS 91 (495)
Q Consensus 12 ~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~ 91 (495)
.+.+.++.-|.+|++++ +++..+|+. ++.+ ..++.|++++| .+..+|..++++.+|++|+.++|...+-
T Consensus 61 ~~dl~nL~~l~vl~~~~-n~l~~lp~a-----ig~l----~~l~~l~vs~n-~ls~lp~~i~s~~~l~~l~~s~n~~~el 129 (565)
T KOG0472|consen 61 REDLKNLACLTVLNVHD-NKLSQLPAA-----IGEL----EALKSLNVSHN-KLSELPEQIGSLISLVKLDCSSNELKEL 129 (565)
T ss_pred cHhhhcccceeEEEecc-chhhhCCHH-----HHHH----HHHHHhhcccc-hHhhccHHHhhhhhhhhhhccccceeec
Confidence 34556777888999999 678888775 8888 88999999997 6688888888999999999998744443
Q ss_pred CCCCCCCCCCcEEEEeCCCCCCccccccccCCCCCccEEecccCccccccccc-cCCCCccEEEeccCCCcccccccccc
Q 011033 92 FPEVALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGV-QLPRSLKRLDILSCDNIRTLTVEEGI 170 (495)
Q Consensus 92 l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~ 170 (495)
.+.++.+..|+.++..+|. +..+|++++.. .+|..+++.++ +++..+.. .....|++++... +.++.+ |..+
T Consensus 130 ~~~i~~~~~l~dl~~~~N~-i~slp~~~~~~--~~l~~l~~~~n-~l~~l~~~~i~m~~L~~ld~~~-N~L~tl--P~~l 202 (565)
T KOG0472|consen 130 PDSIGRLLDLEDLDATNNQ-ISSLPEDMVNL--SKLSKLDLEGN-KLKALPENHIAMKRLKHLDCNS-NLLETL--PPEL 202 (565)
T ss_pred CchHHHHhhhhhhhccccc-cccCchHHHHH--HHHHHhhcccc-chhhCCHHHHHHHHHHhcccch-hhhhcC--Chhh
Confidence 3448888888888888876 67788877766 67778888774 45554443 4466777777655 355555 5554
Q ss_pred ccCCCCccCcccCccccceeee-----------cCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchhhhh
Q 011033 171 QSSSSSSSNRRYTSSLLEKLEI-----------RDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAE 239 (495)
Q Consensus 171 ~~~~~~~~~~~~~~~~L~~L~l-----------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 239 (495)
+. +.+++-|++ .+|+.+..++.+......++. ....-.+++..|+++.| .+..+|.
T Consensus 203 g~-----------l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpa-e~~~~L~~l~vLDLRdN-klke~Pd 269 (565)
T KOG0472|consen 203 GG-----------LESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPA-EHLKHLNSLLVLDLRDN-KLKEVPD 269 (565)
T ss_pred cc-----------hhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHH-HHhcccccceeeecccc-ccccCch
Confidence 32 222333332 334334433333333322222 11222378999999955 4667888
Q ss_pred hcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCC
Q 011033 240 RLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECE 280 (495)
Q Consensus 240 ~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~ 280 (495)
.+.-+++|+.|++++ +.+..+|..++++ .|+.|.+.+|+
T Consensus 270 e~clLrsL~rLDlSN-N~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 270 EICLLRSLERLDLSN-NDISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred HHHHhhhhhhhcccC-CccccCCcccccc-eeeehhhcCCc
Confidence 888999999999998 5688899999999 99999999987
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.84 E-value=2.6e-24 Score=195.76 Aligned_cols=258 Identities=22% Similarity=0.348 Sum_probs=191.0
Q ss_pred cccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCC-CCCC
Q 011033 20 SLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE-VALP 98 (495)
Q Consensus 20 ~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~ 98 (495)
.|+.+.+++ +.++.+.++ +.++ ..|.+|++++| .+..+|++++.+.+++.|++++| ++..+|. ++..
T Consensus 46 ~l~~lils~-N~l~~l~~d-----l~nL----~~l~vl~~~~n-~l~~lp~aig~l~~l~~l~vs~n-~ls~lp~~i~s~ 113 (565)
T KOG0472|consen 46 DLQKLILSH-NDLEVLRED-----LKNL----ACLTVLNVHDN-KLSQLPAAIGELEALKSLNVSHN-KLSELPEQIGSL 113 (565)
T ss_pred chhhhhhcc-CchhhccHh-----hhcc----cceeEEEeccc-hhhhCCHHHHHHHHHHHhhcccc-hHhhccHHHhhh
Confidence 477888888 677777775 8888 88999999997 66788888999999999999997 6777776 8888
Q ss_pred CCCcEEEEeCCCCCCccccccccCCCCCccEEecccCccccccccc-cCCCCccEEEeccCCCccccccccccccCCCCc
Q 011033 99 SKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGV-QLPRSLKRLDILSCDNIRTLTVEEGIQSSSSSS 177 (495)
Q Consensus 99 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 177 (495)
.+|+.++.+.+. +..++++++.. ..|+.++..++ .+...|.. ..+.++..+.+.+ .+++.+ +...
T Consensus 114 ~~l~~l~~s~n~-~~el~~~i~~~--~~l~dl~~~~N-~i~slp~~~~~~~~l~~l~~~~-n~l~~l--~~~~------- 179 (565)
T KOG0472|consen 114 ISLVKLDCSSNE-LKELPDSIGRL--LDLEDLDATNN-QISSLPEDMVNLSKLSKLDLEG-NKLKAL--PENH------- 179 (565)
T ss_pred hhhhhhhccccc-eeecCchHHHH--hhhhhhhcccc-ccccCchHHHHHHHHHHhhccc-cchhhC--CHHH-------
Confidence 899999999877 77788888766 67888888774 46665554 6677788888777 355555 3322
Q ss_pred cCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCC
Q 011033 178 SNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCEN 257 (495)
Q Consensus 178 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 257 (495)
..+..++.+++.. +-++.+ |. ..+.+ .+|+.|++.+|. +..+| .|.++..|++++++. +.
T Consensus 180 ----i~m~~L~~ld~~~-N~L~tl------P~-----~lg~l-~~L~~LyL~~Nk-i~~lP-ef~gcs~L~Elh~g~-N~ 239 (565)
T KOG0472|consen 180 ----IAMKRLKHLDCNS-NLLETL------PP-----ELGGL-ESLELLYLRRNK-IRFLP-EFPGCSLLKELHVGE-NQ 239 (565)
T ss_pred ----HHHHHHHhcccch-hhhhcC------Ch-----hhcch-hhhHHHHhhhcc-cccCC-CCCccHHHHHHHhcc-cH
Confidence 2255677777654 334443 11 11222 567777777555 34455 588889999999877 56
Q ss_pred CCcccccCC-CCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCccccccccccccCCCCcceeEecc
Q 011033 258 LKILPSGLH-NLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG 326 (495)
Q Consensus 258 ~~~l~~~~~-~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 326 (495)
++-+|+... .++++.+||+..| .+++.|....-+++|+.||+++|. ++.+|..++++ .|+.|.+.+
T Consensus 240 i~~lpae~~~~L~~l~vLDLRdN-klke~Pde~clLrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~leG 306 (565)
T KOG0472|consen 240 IEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDEICLLRSLERLDLSNND-ISSLPYSLGNL-HLKFLALEG 306 (565)
T ss_pred HHhhHHHHhcccccceeeecccc-ccccCchHHHHhhhhhhhcccCCc-cccCCcccccc-eeeehhhcC
Confidence 777776655 7899999999998 888999888888889999999874 78888888888 788886554
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.78 E-value=4.5e-21 Score=191.76 Aligned_cols=368 Identities=18% Similarity=0.210 Sum_probs=231.1
Q ss_pred cccccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCC
Q 011033 14 LLQDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFP 93 (495)
Q Consensus 14 ~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~ 93 (495)
.+....+|+.|+++. +.+..+|.. +.++ .+|++|.|.+| .+..+|..+..+++|++|++++| .+..+|
T Consensus 63 ~it~l~~L~~ln~s~-n~i~~vp~s-----~~~~----~~l~~lnL~~n-~l~~lP~~~~~lknl~~LdlS~N-~f~~~P 130 (1081)
T KOG0618|consen 63 QITLLSHLRQLNLSR-NYIRSVPSS-----CSNM----RNLQYLNLKNN-RLQSLPASISELKNLQYLDLSFN-HFGPIP 130 (1081)
T ss_pred hhhhHHHHhhcccch-hhHhhCchh-----hhhh----hcchhheeccc-hhhcCchhHHhhhcccccccchh-ccCCCc
Confidence 345566888999988 778887764 7788 89999999886 77888888888999999999987 566666
Q ss_pred C-CCCCCCCcEEEEeCC-------------------CCCCccccccccCCCCCccE-EecccCccccccccccCCCCccE
Q 011033 94 E-VALPSKLKIIEIEGC-------------------DALKSLPEAWMCDTNSSLET-LYIEHCRTLTYLAGVQLPRSLKR 152 (495)
Q Consensus 94 ~-~~~~~~L~~L~l~~~-------------------~~~~~~~~~~~~~~~~~L~~-L~l~~~~~l~~~~~~~~~~~L~~ 152 (495)
. +..+..++.+..++| .....++.++. .+++ |++.++. ++ ..+...+++|+.
T Consensus 131 l~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~-----~l~~~ldLr~N~-~~-~~dls~~~~l~~ 203 (1081)
T KOG0618|consen 131 LVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIY-----NLTHQLDLRYNE-ME-VLDLSNLANLEV 203 (1081)
T ss_pred hhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchh-----hhheeeecccch-hh-hhhhhhccchhh
Confidence 4 455555555555554 22222333322 2333 6666543 22 222223333333
Q ss_pred EEeccCCCcccccccccc----ccCCCC--ccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEE
Q 011033 153 LDILSCDNIRTLTVEEGI----QSSSSS--SSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSL 226 (495)
Q Consensus 153 L~l~~~~~l~~~~~~~~~----~~~~~~--~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L 226 (495)
+.... ..+..+.+.+.. ..+.++ ......-..+++.++++. ++++.+ | .+..-.++|+.+
T Consensus 204 l~c~r-n~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~-n~l~~l------p------~wi~~~~nle~l 269 (1081)
T KOG0618|consen 204 LHCER-NQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISH-NNLSNL------P------EWIGACANLEAL 269 (1081)
T ss_pred hhhhh-cccceEEecCcchheeeeccCcceeeccccccccceeeecch-hhhhcc------h------HHHHhcccceEe
Confidence 33222 122222110000 000000 000001122455555544 233222 1 111123678888
Q ss_pred EeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCC------------------
Q 011033 227 FVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEG------------------ 288 (495)
Q Consensus 227 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~------------------ 288 (495)
+..+|.. ..+|..+....+|+.|.+.. +.+..+|.....+++|++|++..| .+..+|..
T Consensus 270 ~~n~N~l-~~lp~ri~~~~~L~~l~~~~-nel~yip~~le~~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~ 346 (1081)
T KOG0618|consen 270 NANHNRL-VALPLRISRITSLVSLSAAY-NELEYIPPFLEGLKSLRTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSSNK 346 (1081)
T ss_pred cccchhH-HhhHHHHhhhhhHHHHHhhh-hhhhhCCCcccccceeeeeeehhc-cccccchHHHhhhhHHHHHHhhhhcc
Confidence 8886665 66777777788888888877 456777777777888888888877 44444321
Q ss_pred --------CCCCCCCcEEEecCccccccccccccCCCCcceeEecc-ccccccCC--CCCCccceeEeeccCccchhhhc
Q 011033 289 --------GLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSLEED--GLPTNLHSLHIWGNMEIWKSMIE 357 (495)
Q Consensus 289 --------~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~ 357 (495)
-...+.|+.|++.+|..-...-+.+.++++|+.|+|++ .+..||.. ..++.|++|+++||. ++... .
T Consensus 347 l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNk-L~~Lp-~ 424 (1081)
T KOG0618|consen 347 LSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNK-LTTLP-D 424 (1081)
T ss_pred ccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccch-hhhhh-H
Confidence 11223566677777665444444678889999999999 88888876 456789999999998 33232 3
Q ss_pred ccccCCCCCccceEEeeccccccccchhhhccccccCCCCCCCceeeeccccccccc--ccccccCCCCCeEeccCCCC
Q 011033 358 RGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERL--SSSIVDLQNLTHLNLVDCPK 434 (495)
Q Consensus 358 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l--~~~~~~~~~L~~L~l~~c~~ 434 (495)
.+.+++.|+.|...+| .+..+|... .++.|+.+|++. ++++.+ +..... ++|++||++|+..
T Consensus 425 ---tva~~~~L~tL~ahsN--~l~~fPe~~--------~l~qL~~lDlS~-N~L~~~~l~~~~p~-p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 425 ---TVANLGRLHTLRAHSN--QLLSFPELA--------QLPQLKVLDLSC-NNLSEVTLPEALPS-PNLKYLDLSGNTR 488 (1081)
T ss_pred ---HHHhhhhhHHHhhcCC--ceeechhhh--------hcCcceEEeccc-chhhhhhhhhhCCC-cccceeeccCCcc
Confidence 5778888999988887 899999544 678999999998 777764 333333 8999999999875
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.62 E-value=6.5e-15 Score=152.04 Aligned_cols=253 Identities=28% Similarity=0.387 Sum_probs=141.1
Q ss_pred CcEEEEeCCCCCCccccccccCCCCCccEEecccCccccccccccCCCCccEEEeccCCCccccccccccccCCCCccCc
Q 011033 101 LKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQSSSSSSSNR 180 (495)
Q Consensus 101 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~ 180 (495)
-..|+++++. +..+|..+. ++|+.|++.+ +.++.+|. .+++|+.|+++++ .++.+ |..
T Consensus 203 ~~~LdLs~~~-LtsLP~~l~----~~L~~L~L~~-N~Lt~LP~--lp~~Lk~LdLs~N-~LtsL--P~l----------- 260 (788)
T PRK15387 203 NAVLNVGESG-LTTLPDCLP----AHITTLVIPD-NNLTSLPA--LPPELRTLEVSGN-QLTSL--PVL----------- 260 (788)
T ss_pred CcEEEcCCCC-CCcCCcchh----cCCCEEEccC-CcCCCCCC--CCCCCcEEEecCC-ccCcc--cCc-----------
Confidence 4456666654 455665543 3466666665 34555554 3456666666663 45444 321
Q ss_pred ccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCc
Q 011033 181 RYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKI 260 (495)
Q Consensus 181 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 260 (495)
.++|+.|++.++ .++.+ + .++++|+.|++.+|.. ..+|. ..++|+.|++++| .+..
T Consensus 261 ---p~sL~~L~Ls~N-~L~~L-------------p--~lp~~L~~L~Ls~N~L-t~LP~---~p~~L~~LdLS~N-~L~~ 316 (788)
T PRK15387 261 ---PPGLLELSIFSN-PLTHL-------------P--ALPSGLCKLWIFGNQL-TSLPV---LPPGLQELSVSDN-QLAS 316 (788)
T ss_pred ---ccccceeeccCC-chhhh-------------h--hchhhcCEEECcCCcc-ccccc---cccccceeECCCC-cccc
Confidence 124555655552 33333 1 1335566666665543 33333 2356777777664 3444
Q ss_pred ccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCccccccccccccCCCCcceeEecc-ccccccCCCCCCc
Q 011033 261 LPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSLEEDGLPTN 339 (495)
Q Consensus 261 l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~~~~~~ 339 (495)
+|.. ..+|+.|++++| .++.+|.. ..+|+.|++++|. ++.+|.. .++|+.|++++ .+..+|. .+.+
T Consensus 317 Lp~l---p~~L~~L~Ls~N-~L~~LP~l---p~~Lq~LdLS~N~-Ls~LP~l---p~~L~~L~Ls~N~L~~LP~--l~~~ 383 (788)
T PRK15387 317 LPAL---PSELCKLWAYNN-QLTSLPTL---PSGLQELSVSDNQ-LASLPTL---PSELYKLWAYNNRLTSLPA--LPSG 383 (788)
T ss_pred CCCC---cccccccccccC-cccccccc---ccccceEecCCCc-cCCCCCC---CcccceehhhccccccCcc--cccc
Confidence 4432 135666667665 45555531 1367777777654 4555542 24566666666 5555543 2356
Q ss_pred cceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccCCCCCCCceeeecccccccccccccc
Q 011033 340 LHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSSIV 419 (495)
Q Consensus 340 L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~ 419 (495)
|+.|++++|. +. .++. ..++|+.|++++| .+..+|. .+.+|+.|++++ +.++.+|..+.
T Consensus 384 L~~LdLs~N~-Lt-~LP~------l~s~L~~LdLS~N--~LssIP~----------l~~~L~~L~Ls~-NqLt~LP~sl~ 442 (788)
T PRK15387 384 LKELIVSGNR-LT-SLPV------LPSELKELMVSGN--RLTSLPM----------LPSGLLSLSVYR-NQLTRLPESLI 442 (788)
T ss_pred cceEEecCCc-cc-CCCC------cccCCCEEEccCC--cCCCCCc----------chhhhhhhhhcc-CcccccChHHh
Confidence 7777777765 22 1111 1246777777776 5666654 234677777777 66777777777
Q ss_pred cCCCCCeEeccCCC
Q 011033 420 DLQNLTHLNLVDCP 433 (495)
Q Consensus 420 ~~~~L~~L~l~~c~ 433 (495)
.+++|+.|++++|+
T Consensus 443 ~L~~L~~LdLs~N~ 456 (788)
T PRK15387 443 HLSSETTVNLEGNP 456 (788)
T ss_pred hccCCCeEECCCCC
Confidence 77777777777754
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.59 E-value=2e-14 Score=148.42 Aligned_cols=253 Identities=28% Similarity=0.396 Sum_probs=126.7
Q ss_pred ccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCCCCCCCCCcEEEEeCCCCCCccccccccCCCCCccEEec
Q 011033 53 RLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYI 132 (495)
Q Consensus 53 ~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 132 (495)
.-..|+++++ .+..+|..+. .+|+.|++.+| .++.+|. .+++|++|++++|. +..+|.. . ++|+.|++
T Consensus 202 ~~~~LdLs~~-~LtsLP~~l~--~~L~~L~L~~N-~Lt~LP~--lp~~Lk~LdLs~N~-LtsLP~l---p--~sL~~L~L 269 (788)
T PRK15387 202 GNAVLNVGES-GLTTLPDCLP--AHITTLVIPDN-NLTSLPA--LPPELRTLEVSGNQ-LTSLPVL---P--PGLLELSI 269 (788)
T ss_pred CCcEEEcCCC-CCCcCCcchh--cCCCEEEccCC-cCCCCCC--CCCCCcEEEecCCc-cCcccCc---c--cccceeec
Confidence 3556677775 4556666543 36777777765 5666663 35667777777764 5555542 1 45677777
Q ss_pred ccCccccccccccCCCCccEEEeccCCCccccccccccccCCCCccCcccCccccceeeecCCCCCcccccCCCCccccc
Q 011033 133 EHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLE 212 (495)
Q Consensus 133 ~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 212 (495)
.+| .++.++. .+.+|+.|+++++ .++.+ |.. .++|+.|++++ +.++.+
T Consensus 270 s~N-~L~~Lp~--lp~~L~~L~Ls~N-~Lt~L--P~~--------------p~~L~~LdLS~-N~L~~L----------- 317 (788)
T PRK15387 270 FSN-PLTHLPA--LPSGLCKLWIFGN-QLTSL--PVL--------------PPGLQELSVSD-NQLASL----------- 317 (788)
T ss_pred cCC-chhhhhh--chhhcCEEECcCC-ccccc--ccc--------------ccccceeECCC-CccccC-----------
Confidence 664 3555543 3355666666663 44433 221 12355555555 233332
Q ss_pred ccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCC
Q 011033 213 SLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPC 292 (495)
Q Consensus 213 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~ 292 (495)
+ .++..|+.|.+.+|... .+|. ...+|+.|++++ +.+..+|.. .++|+.|++++| .+..+|.. .
T Consensus 318 --p--~lp~~L~~L~Ls~N~L~-~LP~---lp~~Lq~LdLS~-N~Ls~LP~l---p~~L~~L~Ls~N-~L~~LP~l---~ 381 (788)
T PRK15387 318 --P--ALPSELCKLWAYNNQLT-SLPT---LPSGLQELSVSD-NQLASLPTL---PSELYKLWAYNN-RLTSLPAL---P 381 (788)
T ss_pred --C--CCcccccccccccCccc-cccc---cccccceEecCC-CccCCCCCC---Ccccceehhhcc-ccccCccc---c
Confidence 1 12244555555544332 2332 113566666665 334444432 235556666655 44444432 1
Q ss_pred CCCcEEEecCccccccccccccCCCCcceeEecc-ccccccCCCCCCccceeEeeccCccchhhhcccccCCCCCccceE
Q 011033 293 AKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSLEEDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHL 371 (495)
Q Consensus 293 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L 371 (495)
.+|+.|++++|. ++.+|.. .++|+.|++++ .+..+|. .+.+|+.|++++|.. . .++. .+.++++|+.|
T Consensus 382 ~~L~~LdLs~N~-Lt~LP~l---~s~L~~LdLS~N~LssIP~--l~~~L~~L~Ls~NqL-t-~LP~---sl~~L~~L~~L 450 (788)
T PRK15387 382 SGLKELIVSGNR-LTSLPVL---PSELKELMVSGNRLTSLPM--LPSGLLSLSVYRNQL-T-RLPE---SLIHLSSETTV 450 (788)
T ss_pred cccceEEecCCc-ccCCCCc---ccCCCEEEccCCcCCCCCc--chhhhhhhhhccCcc-c-ccCh---HHhhccCCCeE
Confidence 356666666653 4444432 23455555555 4444432 233455555555442 2 1222 24444555555
Q ss_pred Eeecc
Q 011033 372 TIEGC 376 (495)
Q Consensus 372 ~l~~~ 376 (495)
++++|
T Consensus 451 dLs~N 455 (788)
T PRK15387 451 NLEGN 455 (788)
T ss_pred ECCCC
Confidence 55554
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.52 E-value=4.1e-14 Score=146.97 Aligned_cols=121 Identities=25% Similarity=0.353 Sum_probs=79.3
Q ss_pred ccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCCCCCC
Q 011033 19 CSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALP 98 (495)
Q Consensus 19 ~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~ 98 (495)
.+..+|++++ .+++.+|.. +. ++|+.|++++| .+..+|..+. .+|++|++++| .++.+|. ..+
T Consensus 178 ~~~~~L~L~~-~~LtsLP~~-----Ip------~~L~~L~Ls~N-~LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~-~l~ 240 (754)
T PRK15370 178 NNKTELRLKI-LGLTTIPAC-----IP------EQITTLILDNN-ELKSLPENLQ--GNIKTLYANSN-QLTSIPA-TLP 240 (754)
T ss_pred cCceEEEeCC-CCcCcCCcc-----cc------cCCcEEEecCC-CCCcCChhhc--cCCCEEECCCC-ccccCCh-hhh
Confidence 3567788877 567776653 21 66888888886 5567775443 57888888876 5666664 234
Q ss_pred CCCcEEEEeCCCCCCccccccccCCCCCccEEecccCccccccccccCCCCccEEEeccCCCcccc
Q 011033 99 SKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTL 164 (495)
Q Consensus 99 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~ 164 (495)
.+|+.|++++|. +..+|..+. .+|+.|++++ +.++.+|.. .+++|+.|+++++ .++.+
T Consensus 241 ~~L~~L~Ls~N~-L~~LP~~l~----s~L~~L~Ls~-N~L~~LP~~-l~~sL~~L~Ls~N-~Lt~L 298 (754)
T PRK15370 241 DTIQEMELSINR-ITELPERLP----SALQSLDLFH-NKISCLPEN-LPEELRYLSVYDN-SIRTL 298 (754)
T ss_pred ccccEEECcCCc-cCcCChhHh----CCCCEEECcC-CccCccccc-cCCCCcEEECCCC-ccccC
Confidence 568888888876 556776653 4578888876 356666553 2357777777774 45544
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.47 E-value=1e-15 Score=139.96 Aligned_cols=102 Identities=19% Similarity=0.208 Sum_probs=61.2
Q ss_pred ccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCC--CCCC
Q 011033 21 LRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE--VALP 98 (495)
Q Consensus 21 L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~--~~~~ 98 (495)
-.++++.. ++|+.||++ +|+.+ ++||.|||++|.....-|..|..++.|-.|-+.+++.++++|. ++++
T Consensus 69 tveirLdq-N~I~~iP~~----aF~~l----~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL 139 (498)
T KOG4237|consen 69 TVEIRLDQ-NQISSIPPG----AFKTL----HRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGL 139 (498)
T ss_pred ceEEEecc-CCcccCChh----hccch----hhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhH
Confidence 45666666 667777775 66666 7777777777644334455666677766666666556777765 6666
Q ss_pred CCCcEEEEeCCCCCCcccc-ccccCCCCCccEEeccc
Q 011033 99 SKLKIIEIEGCDALKSLPE-AWMCDTNSSLETLYIEH 134 (495)
Q Consensus 99 ~~L~~L~l~~~~~~~~~~~-~~~~~~~~~L~~L~l~~ 134 (495)
..|+.|.+.-|. +.-+.. .+..+ ++|..|.+.+
T Consensus 140 ~slqrLllNan~-i~Cir~~al~dL--~~l~lLslyD 173 (498)
T KOG4237|consen 140 SSLQRLLLNANH-INCIRQDALRDL--PSLSLLSLYD 173 (498)
T ss_pred HHHHHHhcChhh-hcchhHHHHHHh--hhcchhcccc
Confidence 667766666555 222222 22222 5555566555
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.45 E-value=4.9e-13 Score=139.04 Aligned_cols=220 Identities=24% Similarity=0.363 Sum_probs=109.1
Q ss_pred cccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCCCCCCCCCcEEEEeCCCCCCccccccccCCCCCccEEe
Q 011033 52 CRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLY 131 (495)
Q Consensus 52 ~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 131 (495)
.+...|+++++ .+..+|..+. ++|+.|++++| .++.+|. ..+.+|+.|++++|. +..+|..+. ++|+.|+
T Consensus 178 ~~~~~L~L~~~-~LtsLP~~Ip--~~L~~L~Ls~N-~LtsLP~-~l~~nL~~L~Ls~N~-LtsLP~~l~----~~L~~L~ 247 (754)
T PRK15370 178 NNKTELRLKIL-GLTTIPACIP--EQITTLILDNN-ELKSLPE-NLQGNIKTLYANSNQ-LTSIPATLP----DTIQEME 247 (754)
T ss_pred cCceEEEeCCC-CcCcCCcccc--cCCcEEEecCC-CCCcCCh-hhccCCCEEECCCCc-cccCChhhh----ccccEEE
Confidence 44666777765 4556665432 46777777776 5666664 123467777777665 556665443 3577777
Q ss_pred cccCccccccccccCCCCccEEEeccCCCccccccccccccCCCCccCcccCccccceeeecCCCCCcccccCCCCcccc
Q 011033 132 IEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATL 211 (495)
Q Consensus 132 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 211 (495)
+++| .+..+|.. .+.+|+.|++++ +.++.+ |..+ .++|+.|+++++ .++.+
T Consensus 248 Ls~N-~L~~LP~~-l~s~L~~L~Ls~-N~L~~L--P~~l-------------~~sL~~L~Ls~N-~Lt~L---------- 298 (754)
T PRK15370 248 LSIN-RITELPER-LPSALQSLDLFH-NKISCL--PENL-------------PEELRYLSVYDN-SIRTL---------- 298 (754)
T ss_pred CcCC-ccCcCChh-HhCCCCEEECcC-CccCcc--cccc-------------CCCCcEEECCCC-ccccC----------
Confidence 7764 34455543 234666666664 345444 4333 124666666553 33332
Q ss_pred cccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCC
Q 011033 212 ESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLP 291 (495)
Q Consensus 212 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~ 291 (495)
+ ..++++|+.|++++|... .+|..+ .++|+.|++++| .+..+|..+. ++|+.|++++| .+..+|..+.
T Consensus 299 ---P-~~lp~sL~~L~Ls~N~Lt-~LP~~l--~~sL~~L~Ls~N-~Lt~LP~~l~--~sL~~L~Ls~N-~L~~LP~~lp- 366 (754)
T PRK15370 299 ---P-AHLPSGITHLNVQSNSLT-ALPETL--PPGLKTLEAGEN-ALTSLPASLP--PELQVLDVSKN-QITVLPETLP- 366 (754)
T ss_pred ---c-ccchhhHHHHHhcCCccc-cCCccc--cccceeccccCC-ccccCChhhc--CcccEEECCCC-CCCcCChhhc-
Confidence 1 112234555555544332 233222 245555555553 2333443332 45555555555 3444443221
Q ss_pred CCCCcEEEecCccccccccccccCCCCcceeEecc
Q 011033 292 CAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG 326 (495)
Q Consensus 292 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 326 (495)
++|+.|++++|. +..+|..+. .+|+.|++++
T Consensus 367 -~~L~~LdLs~N~-Lt~LP~~l~--~sL~~LdLs~ 397 (754)
T PRK15370 367 -PTITTLDVSRNA-LTNLPENLP--AALQIMQASR 397 (754)
T ss_pred -CCcCEEECCCCc-CCCCCHhHH--HHHHHHhhcc
Confidence 355555555553 334443322 2344444444
No 18
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.35 E-value=1.7e-14 Score=132.08 Aligned_cols=391 Identities=14% Similarity=0.138 Sum_probs=209.8
Q ss_pred cchhHHhhcCccccccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccc-cccCCCCccEE
Q 011033 3 EQTYIWKSHNELLQDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQ-SSLSLSSLREI 81 (495)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~-~~~~l~~L~~L 81 (495)
++..|...++++|+.++.||.|++++ +.|+.|.++ +|.++ ++|..|-+.+++.+.++|. .|+.+..|+.|
T Consensus 75 dqN~I~~iP~~aF~~l~~LRrLdLS~-N~Is~I~p~----AF~GL----~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 75 DQNQISSIPPGAFKTLHRLRRLDLSK-NNISFIAPD----AFKGL----ASLLSLVLYGNNKITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred ccCCcccCChhhccchhhhceecccc-cchhhcChH----hhhhh----HhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence 35567788899999999999999999 899999886 89999 9999999999779999996 48899999999
Q ss_pred EEeCCCCCCCCCC--CCCCCCCcEEEEeCCCCCCcccc-ccccCCCCCccEEecccCccccccccccCCCCccEE-----
Q 011033 82 EIYKCSSLVSFPE--VALPSKLKIIEIEGCDALKSLPE-AWMCDTNSSLETLYIEHCRTLTYLAGVQLPRSLKRL----- 153 (495)
Q Consensus 82 ~l~~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L----- 153 (495)
.+.-| .+..+.. +..+++|..|.+.+|. +..++. .+... .+++.+.+..++.+.. .+++.+...
T Consensus 146 llNan-~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l--~~i~tlhlA~np~icd----CnL~wla~~~a~~~ 217 (498)
T KOG4237|consen 146 LLNAN-HINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGL--AAIKTLHLAQNPFICD----CNLPWLADDLAMNP 217 (498)
T ss_pred hcChh-hhcchhHHHHHHhhhcchhcccchh-hhhhccccccch--hccchHhhhcCccccc----cccchhhhHHhhch
Confidence 99877 6666654 7889999999999976 666665 33223 6677777766542211 111111110
Q ss_pred -EeccCCCccccccccccccCCCCccCcccCccccceeeec--CCC--CCcccccCCCCcccccccccCCCCCCccEEEe
Q 011033 154 -DILSCDNIRTLTVEEGIQSSSSSSSNRRYTSSLLEKLEIR--DCP--SLTCIFSQNELPATLESLEVGNLPPSLKSLFV 228 (495)
Q Consensus 154 -~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 228 (495)
..++..... +..+. ...+..++.. .|. ++..-..+.+.++.+.+..--.-.++|+.|++
T Consensus 218 ietsgarc~~----p~rl~------------~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnl 281 (498)
T KOG4237|consen 218 IETSGARCVS----PYRLY------------YKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNL 281 (498)
T ss_pred hhcccceecc----hHHHH------------HHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEecc
Confidence 001100000 00000 0000000000 000 01000111222221111100111255666666
Q ss_pred ecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcc-cccCCCCCCccEEEeeCCCCcccc-CCCCCCCCCCcEEEecCcccc
Q 011033 229 WYCPKLESIAERLDNNTSLETINISGCENLKIL-PSGLHNLGQLQEIEIWECENLVSF-PEGGLPCAKLSKLRIYGCERL 306 (495)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~~~~~ 306 (495)
++|...+.-+.+|.....+++|.+..| .+..+ ...|.++..|+.|++.+| .++.+ |..+....+|.+|.+-.|+..
T Consensus 282 snN~i~~i~~~aFe~~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~N-~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 282 SNNKITRIEDGAFEGAAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYDN-QITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred CCCccchhhhhhhcchhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecCC-eeEEEecccccccceeeeeehccCccc
Confidence 655555555556666666666666653 33333 234555666666666665 34433 234444455666655443211
Q ss_pred cc-----ccccccCCCCcceeEecc-ccccccCCCCCCccceeEeeccCccch--hhhc------ccccCCCCCccceE-
Q 011033 307 EA-----LPKGLHNLTSLQQLTIGG-ELPSLEEDGLPTNLHSLHIWGNMEIWK--SMIE------RGRGFHRFSSLRHL- 371 (495)
Q Consensus 307 ~~-----~~~~l~~l~~L~~L~l~~-~l~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~------~~~~~~~l~~L~~L- 371 (495)
-. +.+|+ .+ .....|+.+.|..++.+.++....-+. ..++ ....-..++-+.++
T Consensus 360 CnC~l~wl~~Wl-----------r~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVv 428 (498)
T KOG4237|consen 360 CNCRLAWLGEWL-----------RKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVV 428 (498)
T ss_pred CccchHHHHHHH-----------hhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhH
Confidence 10 00111 01 222233444455566665554431110 0000 00011222222221
Q ss_pred EeeccccccccchhhhccccccCCCCCCCceeeecccccccccccccccCCCCCeEeccCCCCCCCCCCCCC--ccccce
Q 011033 372 TIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSSIVDLQNLTHLNLVDCPKLKYFPEKGL--PSSLLQ 449 (495)
Q Consensus 372 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~ 449 (495)
.-++ ..+..+|.. .|..-..|++.+ +.++.+|.. .+.+| .+++++ +.+..+....+ +++|.+
T Consensus 429 RcSn--k~lk~lp~~---------iP~d~telyl~g-n~~~~vp~~--~~~~l-~~dls~-n~i~~Lsn~tf~n~tql~t 492 (498)
T KOG4237|consen 429 RCSN--KLLKLLPRG---------IPVDVTELYLDG-NAITSVPDE--LLRSL-LLDLSN-NRISSLSNYTFSNMTQLST 492 (498)
T ss_pred hhcc--cchhhcCCC---------CCchhHHHhccc-chhcccCHH--HHhhh-hccccc-Cceehhhcccccchhhhhe
Confidence 1122 245555553 466788888988 788888865 66777 888988 55777665433 677777
Q ss_pred eeccCC
Q 011033 450 LSIYRC 455 (495)
Q Consensus 450 L~l~~c 455 (495)
|.++++
T Consensus 493 lilsyn 498 (498)
T KOG4237|consen 493 LILSYN 498 (498)
T ss_pred eEEecC
Confidence 777653
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.24 E-value=6e-14 Score=113.97 Aligned_cols=182 Identities=21% Similarity=0.307 Sum_probs=101.5
Q ss_pred CCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCccccccccccccCCCCccee
Q 011033 243 NNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQL 322 (495)
Q Consensus 243 ~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 322 (495)
.+.+++.|.+++ +.+..+|..+..+.+|+.|++++| .++++|.....++.|+.|++.-|+ +..+|.+|+.+|.|+.|
T Consensus 31 ~~s~ITrLtLSH-NKl~~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSH-NKLTVVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhccc-CceeecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchhh-hhcCccccCCCchhhhh
Confidence 344555555555 334445555556666666666554 555555555555566666555443 34455555555555555
Q ss_pred EeccccccccCCCCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccCCCCCCCce
Q 011033 323 TIGGELPSLEEDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTS 402 (495)
Q Consensus 323 ~l~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 402 (495)
|+ ..|..-....+. .+..+..|+-|.+++| .++.+|.+.+ .+++|+.
T Consensus 108 dl---------------------tynnl~e~~lpg---nff~m~tlralyl~dn--dfe~lp~dvg-------~lt~lqi 154 (264)
T KOG0617|consen 108 DL---------------------TYNNLNENSLPG---NFFYMTTLRALYLGDN--DFEILPPDVG-------KLTNLQI 154 (264)
T ss_pred hc---------------------cccccccccCCc---chhHHHHHHHHHhcCC--CcccCChhhh-------hhcceeE
Confidence 55 444322222222 3445556666667666 5666666553 4567777
Q ss_pred eeecccccccccccccccCCCCCeEeccCCCCCCCCCCC----CCccccceeeccCCchhHHhh
Q 011033 403 LRIVDFPNLERLSSSIVDLQNLTHLNLVDCPKLKYFPEK----GLPSSLLQLSIYRCPLMEEKC 462 (495)
Q Consensus 403 L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~----~~~~~L~~L~l~~c~~l~~~~ 462 (495)
|.+.+ +.+-++|..++.+..|++|-+++ +.++-+|.+ ....+=+++....+|.+..+.
T Consensus 155 l~lrd-ndll~lpkeig~lt~lrelhiqg-nrl~vlppel~~l~l~~~k~v~r~E~NPwv~pIa 216 (264)
T KOG0617|consen 155 LSLRD-NDLLSLPKEIGDLTRLRELHIQG-NRLTVLPPELANLDLVGNKQVMRMEENPWVNPIA 216 (264)
T ss_pred Eeecc-CchhhCcHHHHHHHHHHHHhccc-ceeeecChhhhhhhhhhhHHHHhhhhCCCCChHH
Confidence 77777 66667777777777777777777 446665542 112233344555555554443
No 20
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.23 E-value=2.4e-13 Score=125.54 Aligned_cols=136 Identities=18% Similarity=0.285 Sum_probs=83.2
Q ss_pred CCccEEEeecCCCchhhhh--hcCCCCCCcEEeeeCCCCCCcc--cccCCCCCCccEEEeeCCCCccc--cCCCCCCCCC
Q 011033 221 PSLKSLFVWYCPKLESIAE--RLDNNTSLETINISGCENLKIL--PSGLHNLGQLQEIEIWECENLVS--FPEGGLPCAK 294 (495)
Q Consensus 221 ~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~l--~~~~~~l~~L~~L~l~~~~~l~~--l~~~~~~~~~ 294 (495)
..|+.+..+++...+..+. -..+..+|+.|.+.+|..+... ..--.+++.|+.+++..+..+.+ +......|+.
T Consensus 294 ~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~ 373 (483)
T KOG4341|consen 294 HALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPR 373 (483)
T ss_pred hHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCch
Confidence 3456666666555443322 2335677777777777665443 11123567788888877744432 3344456778
Q ss_pred CcEEEecCccccccccccccCCCCcceeEeccccccccC-CCCCCccceeEeeccCccchhhhcccccCCCCCccceEEe
Q 011033 295 LSKLRIYGCERLEALPKGLHNLTSLQQLTIGGELPSLEE-DGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTI 373 (495)
Q Consensus 295 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~l~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l 373 (495)
|+.+.+++|..+++. ++.. +.. ......|+.+.+++|+.+++...+ .+..+++|+.+++
T Consensus 374 lr~lslshce~itD~--gi~~---------------l~~~~c~~~~l~~lEL~n~p~i~d~~Le---~l~~c~~Leri~l 433 (483)
T KOG4341|consen 374 LRVLSLSHCELITDE--GIRH---------------LSSSSCSLEGLEVLELDNCPLITDATLE---HLSICRNLERIEL 433 (483)
T ss_pred hccCChhhhhhhhhh--hhhh---------------hhhccccccccceeeecCCCCchHHHHH---HHhhCcccceeee
Confidence 888888877666653 1111 111 122346777778888877777766 6888888888888
Q ss_pred ecc
Q 011033 374 EGC 376 (495)
Q Consensus 374 ~~~ 376 (495)
.+|
T Consensus 434 ~~~ 436 (483)
T KOG4341|consen 434 IDC 436 (483)
T ss_pred ech
Confidence 887
No 21
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.17 E-value=1.2e-12 Score=120.96 Aligned_cols=279 Identities=17% Similarity=0.227 Sum_probs=133.0
Q ss_pred cccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCcccc--ccccCCCCccEEEEeCCCCCCCCCC---
Q 011033 20 SLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLP--QSSLSLSSLREIEIYKCSSLVSFPE--- 94 (495)
Q Consensus 20 ~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~--~~~~~l~~L~~L~l~~~~~l~~l~~--- 94 (495)
.||+|.+++|..+.+ ..+...+..||++++|.+.+|..+++.. ..-..+++|++|++..|..+++..-
T Consensus 139 ~lk~LSlrG~r~v~~-------sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~l 211 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGD-------SSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYL 211 (483)
T ss_pred ccccccccccccCCc-------chhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHH
Confidence 367777777655443 2355555666777777777776554321 1233567777777777766654331
Q ss_pred CCCCCCCcEEEEeCCCCCCccccccccCCCCCccEEecccCccccc--cc-cccCCCCccEEEeccCCCccccccccccc
Q 011033 95 VALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTY--LA-GVQLPRSLKRLDILSCDNIRTLTVEEGIQ 171 (495)
Q Consensus 95 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 171 (495)
...+++|++|++++|+.+..-.......+++.++.+...+|...+. +. ......-+..+++.+|..++..++.
T Consensus 212 a~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~---- 287 (483)
T KOG4341|consen 212 AEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLW---- 287 (483)
T ss_pred HHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHH----
Confidence 4457777777777776554422222223334455555555543221 11 1133334444555555544433111
Q ss_pred cCCCCccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchhhhh--hcCCCCCCcE
Q 011033 172 SSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAE--RLDNNTSLET 249 (495)
Q Consensus 172 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~ 249 (495)
...+....++.++.++|.++++.. .. ..+.-..+|+.+.+..|..+...-. .-.+++.|+.
T Consensus 288 -------~i~~~c~~lq~l~~s~~t~~~d~~-----l~-----aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~ 350 (483)
T KOG4341|consen 288 -------LIACGCHALQVLCYSSCTDITDEV-----LW-----ALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLER 350 (483)
T ss_pred -------HHhhhhhHhhhhcccCCCCCchHH-----HH-----HHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhh
Confidence 111223345555555555544430 00 1111124556666655554333221 1124455555
Q ss_pred EeeeCCCCCCc--ccccCCCCCCccEEEeeCCCCcccc-----CCCCCCCCCCcEEEecCccccccc-cccccCCCCcce
Q 011033 250 INISGCENLKI--LPSGLHNLGQLQEIEIWECENLVSF-----PEGGLPCAKLSKLRIYGCERLEAL-PKGLHNLTSLQQ 321 (495)
Q Consensus 250 L~l~~~~~~~~--l~~~~~~l~~L~~L~l~~~~~l~~l-----~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~ 321 (495)
+++.+|..+.+ +-....+++.|+++.+++|..+++- .........++.+.+++|+.+++- -..+..+++|+.
T Consensus 351 l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Ler 430 (483)
T KOG4341|consen 351 LDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLER 430 (483)
T ss_pred hcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccce
Confidence 55555433321 1112234556666666655444433 112223345555556665554432 124445556666
Q ss_pred eEecc
Q 011033 322 LTIGG 326 (495)
Q Consensus 322 L~l~~ 326 (495)
+++.+
T Consensus 431 i~l~~ 435 (483)
T KOG4341|consen 431 IELID 435 (483)
T ss_pred eeeec
Confidence 55554
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.13 E-value=1.5e-12 Score=105.98 Aligned_cols=148 Identities=24% Similarity=0.333 Sum_probs=110.6
Q ss_pred CCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEe
Q 011033 221 PSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRI 300 (495)
Q Consensus 221 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l 300 (495)
+.++.|.+++|. +..+|+.++.+.+|+.|++++ +.+.++|..++.++.|+.|++..| .+..+|.+++.+|.|+.||+
T Consensus 33 s~ITrLtLSHNK-l~~vppnia~l~nlevln~~n-nqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 33 SNITRLTLSHNK-LTVVPPNIAELKNLEVLNLSN-NQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhcccCc-eeecCCcHHHhhhhhhhhccc-chhhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhhhhc
Confidence 668889998665 556777789999999999988 678899999999999999999987 78899999999999999999
Q ss_pred cCccccc-cccccccCCCCcceeEecc-ccccccCC-CCCCccceeEeeccCccchhhhcccccCCCCCccceEEeecc
Q 011033 301 YGCERLE-ALPKGLHNLTSLQQLTIGG-ELPSLEED-GLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGC 376 (495)
Q Consensus 301 ~~~~~~~-~~~~~l~~l~~L~~L~l~~-~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 376 (495)
.+|+.-+ .+|..|..+.-|+.|.+++ +...+|+. +...+|+.|.+..|..++ .+. .++.+..|++|++.+|
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~--lpk---eig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLS--LPK---EIGDLTRLRELHIQGN 183 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhh--CcH---HHHHHHHHHHHhcccc
Confidence 9876544 5677777777777777777 55555554 455555555555555332 111 3455555555555555
No 23
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.13 E-value=3.6e-11 Score=127.22 Aligned_cols=107 Identities=26% Similarity=0.292 Sum_probs=72.2
Q ss_pred ccccccEEecccccc-cccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCC-
Q 011033 17 DICSLRRLTITSCPK-LQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE- 94 (495)
Q Consensus 17 ~~~~L~~L~l~~c~~-l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~- 94 (495)
.++.|++|-+.+... +..++.+ .|..+ |.|+.||+++|..+..+|..++.+-+||+|++++. .+..+|.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~----ff~~m----~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~ 613 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGE----FFRSL----PLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSG 613 (889)
T ss_pred CCCccceEEEeecchhhhhcCHH----HHhhC----cceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchH
Confidence 345677777777321 5555553 56667 77777777777777777777777777777777774 6777776
Q ss_pred CCCCCCCcEEEEeCCCCCCccccccccCCCCCccEEeccc
Q 011033 95 VALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEH 134 (495)
Q Consensus 95 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 134 (495)
++++.+|.+|++..+.....+|.....+ ++|++|.+..
T Consensus 614 l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L--~~Lr~L~l~~ 651 (889)
T KOG4658|consen 614 LGNLKKLIYLNLEVTGRLESIPGILLEL--QSLRVLRLPR 651 (889)
T ss_pred HHHHHhhheeccccccccccccchhhhc--ccccEEEeec
Confidence 7777777777777766555554443323 6777777765
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.08 E-value=3.3e-11 Score=115.81 Aligned_cols=190 Identities=18% Similarity=0.139 Sum_probs=91.7
Q ss_pred hhhhcCCCCCCcEEeeeCCCCCCcccccCCCC---CCccEEEeeCCCCcc----ccCCCCCCC-CCCcEEEecCccccc-
Q 011033 237 IAERLDNNTSLETINISGCENLKILPSGLHNL---GQLQEIEIWECENLV----SFPEGGLPC-AKLSKLRIYGCERLE- 307 (495)
Q Consensus 237 ~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l---~~L~~L~l~~~~~l~----~l~~~~~~~-~~L~~L~l~~~~~~~- 307 (495)
++..+..+++|+.|++++|......+..+..+ ++|++|++++|.... .+...+..+ ++|+.|++++|....
T Consensus 73 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 152 (319)
T cd00116 73 LLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGA 152 (319)
T ss_pred HHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCch
Confidence 33445556677777777654432222222222 337777777763221 111122233 567777777765331
Q ss_pred ---cccccccCCCCcceeEecc-cccc-----ccC-CCCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccc
Q 011033 308 ---ALPKGLHNLTSLQQLTIGG-ELPS-----LEE-DGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCD 377 (495)
Q Consensus 308 ---~~~~~l~~l~~L~~L~l~~-~l~~-----~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 377 (495)
.++..+..+++|++|++++ .+.. ++. ....++|++|++++|.............+..+++|++|++++|
T Consensus 153 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n- 231 (319)
T cd00116 153 SCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN- 231 (319)
T ss_pred HHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCC-
Confidence 2333455556677777666 3331 111 1123467777777765322111111123556677777777776
Q ss_pred cccccc--hhhhccccccCCCCCCCceeeeccccccc-----ccccccccCCCCCeEeccCC
Q 011033 378 DDMVSF--PLEDKRLGTALPLPASLTSLRIVDFPNLE-----RLSSSIVDLQNLTHLNLVDC 432 (495)
Q Consensus 378 ~~~~~~--~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-----~l~~~~~~~~~L~~L~l~~c 432 (495)
.+... ..-... .....+.|+.|++++| .++ .+...+..+++|+.+++++|
T Consensus 232 -~l~~~~~~~l~~~---~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N 288 (319)
T cd00116 232 -NLTDAGAAALASA---LLSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGN 288 (319)
T ss_pred -cCchHHHHHHHHH---HhccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCC
Confidence 33321 110000 0001246777777764 332 23334445566777777774
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.05 E-value=3.6e-11 Score=115.50 Aligned_cols=255 Identities=21% Similarity=0.137 Sum_probs=152.6
Q ss_pred CCccEEEeecCCCch----hhhhhcCCCCCCcEEeeeCCCCC------CcccccCCCCCCccEEEeeCCCCccccCCCCC
Q 011033 221 PSLKSLFVWYCPKLE----SIAERLDNNTSLETINISGCENL------KILPSGLHNLGQLQEIEIWECENLVSFPEGGL 290 (495)
Q Consensus 221 ~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~------~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~ 290 (495)
+.|+.++++++.... .++..+...++++.++++++... ..++..+..+++|+.|++++|......+..+.
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 102 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE 102 (319)
T ss_pred hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence 458888888776532 35556777888999999885433 11234566788999999999855433332222
Q ss_pred CC---CCCcEEEecCccccc----cccccccCC-CCcceeEecc-cccc-----ccC-CCCCCccceeEeeccCccchhh
Q 011033 291 PC---AKLSKLRIYGCERLE----ALPKGLHNL-TSLQQLTIGG-ELPS-----LEE-DGLPTNLHSLHIWGNMEIWKSM 355 (495)
Q Consensus 291 ~~---~~L~~L~l~~~~~~~----~~~~~l~~l-~~L~~L~l~~-~l~~-----~~~-~~~~~~L~~L~l~~~~~~~~~~ 355 (495)
.+ ++|+.|++++|.... .+...+..+ ++|+.|++++ .+.. +.. ....+.|++|++++|.......
T Consensus 103 ~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 182 (319)
T cd00116 103 SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGI 182 (319)
T ss_pred HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHH
Confidence 22 469999999986431 222345566 8999999998 5441 111 1234689999999987443222
Q ss_pred hcccccCCCCCccceEEeeccccccccchhhhccccccCCCCCCCceeeeccccccccc-----cccc-ccCCCCCeEec
Q 011033 356 IERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERL-----SSSI-VDLQNLTHLNL 429 (495)
Q Consensus 356 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-----~~~~-~~~~~L~~L~l 429 (495)
......+..+++|++|++++| .+..... ..+...+...++|+.|++++| .++.. ...+ ...+.|++|++
T Consensus 183 ~~l~~~l~~~~~L~~L~L~~n--~i~~~~~--~~l~~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~l 257 (319)
T cd00116 183 RALAEGLKANCNLEVLDLNNN--GLTDEGA--SALAETLASLKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLTLSL 257 (319)
T ss_pred HHHHHHHHhCCCCCEEeccCC--ccChHHH--HHHHHHhcccCCCCEEecCCC-cCchHHHHHHHHHHhccCCCceEEEc
Confidence 221123455679999999998 4432211 111112234578999999995 44431 1111 12479999999
Q ss_pred cCCCCCCC-----CCC-CCCccccceeeccCCchhHHhhhc----CCCeeeecceEEeccCc
Q 011033 430 VDCPKLKY-----FPE-KGLPSSLLQLSIYRCPLMEEKCRK----DGGLLTHIPSVQIDLNG 481 (495)
Q Consensus 430 ~~c~~l~~-----l~~-~~~~~~L~~L~l~~c~~l~~~~~~----~~~~i~~~~~~~i~~~~ 481 (495)
++|. ++. +.. ....++|+++++++|..-.+.+.. ......++..++|.++.
T Consensus 258 ~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 258 SCND-ITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred cCCC-CCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 9975 432 111 112478999999998654332111 11012455666665543
No 26
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.01 E-value=4.9e-10 Score=118.78 Aligned_cols=92 Identities=23% Similarity=0.340 Sum_probs=79.3
Q ss_pred hhcCccccccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCC
Q 011033 9 KSHNELLQDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSS 88 (495)
Q Consensus 9 ~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~ 88 (495)
....++|..++.|++|++++|..+..+|.. ++.+ -+||+|++++. .+..+|..+++++.|.+|++..+..
T Consensus 561 ~is~~ff~~m~~LrVLDLs~~~~l~~LP~~-----I~~L----i~LryL~L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~ 630 (889)
T KOG4658|consen 561 EISGEFFRSLPLLRVLDLSGNSSLSKLPSS-----IGEL----VHLRYLDLSDT-GISHLPSGLGNLKKLIYLNLEVTGR 630 (889)
T ss_pred hcCHHHHhhCcceEEEECCCCCccCcCChH-----Hhhh----hhhhcccccCC-CccccchHHHHHHhhheeccccccc
Confidence 444566999999999999998899998885 9999 99999999995 7789999999999999999999877
Q ss_pred CCCCCC-CCCCCCCcEEEEeCCC
Q 011033 89 LVSFPE-VALPSKLKIIEIEGCD 110 (495)
Q Consensus 89 l~~l~~-~~~~~~L~~L~l~~~~ 110 (495)
+..++. ...+.+|++|.+....
T Consensus 631 l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 631 LESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred cccccchhhhcccccEEEeeccc
Confidence 777766 4449999999988743
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=5.3e-11 Score=110.91 Aligned_cols=204 Identities=16% Similarity=0.106 Sum_probs=119.8
Q ss_pred CCccEEEeecCCCchhhh--hhcCCCCCCcEEeeeCCCCC--CcccccCCCCCCccEEEeeCCCCccccCC-CCCCCCCC
Q 011033 221 PSLKSLFVWYCPKLESIA--ERLDNNTSLETINISGCENL--KILPSGLHNLGQLQEIEIWECENLVSFPE-GGLPCAKL 295 (495)
Q Consensus 221 ~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~--~~l~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L 295 (495)
.+|+.+.+.++. ....+ .....+++++.|++++|-.. ..+-.-...+|+|+.|+++.|........ ....++.|
T Consensus 121 kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 121 KKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred HhhhheeecCcc-ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence 456777776433 32222 23456788888888875222 22233355678888888888743222222 22345678
Q ss_pred cEEEecCccccc-cccccccCCCCcceeEecc-ccccc--cCCCCCCccceeEeeccCccchhhhcccccCCCCCccceE
Q 011033 296 SKLRIYGCERLE-ALPKGLHNLTSLQQLTIGG-ELPSL--EEDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHL 371 (495)
Q Consensus 296 ~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~-~l~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L 371 (495)
+.|.++.|.... ++...+..+|+|+.|++.. ..... .+...++.|++|++++|..++..... ....++.|+.|
T Consensus 200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~---~~~~l~~L~~L 276 (505)
T KOG3207|consen 200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGY---KVGTLPGLNQL 276 (505)
T ss_pred heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccccc---ccccccchhhh
Confidence 888888885322 2323455678888888876 21111 12355778899999988876644433 57888888888
Q ss_pred EeeccccccccchhhhccccccCCCCCCCceeeeccccccccccc--ccccCCCCCeEeccC
Q 011033 372 TIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSS--SIVDLQNLTHLNLVD 431 (495)
Q Consensus 372 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~~~~~L~~L~l~~ 431 (495)
+++.| ++.++..-.......-..+++|+.|++.. +++.+++. .+..+++|+.|.+..
T Consensus 277 nls~t--gi~si~~~d~~s~~kt~~f~kL~~L~i~~-N~I~~w~sl~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 277 NLSST--GIASIAEPDVESLDKTHTFPKLEYLNISE-NNIRDWRSLNHLRTLENLKHLRITL 335 (505)
T ss_pred hcccc--CcchhcCCCccchhhhcccccceeeeccc-Cccccccccchhhccchhhhhhccc
Confidence 88888 55544331111111112345777777777 66666654 445556666666555
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.72 E-value=7.1e-09 Score=88.20 Aligned_cols=108 Identities=19% Similarity=0.233 Sum_probs=31.8
Q ss_pred cccccccccEEecccccccccccchhhHHHHh-hhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCC
Q 011033 14 LLQDICSLRRLTITSCPKLQSLVAEEEKDQQQ-QLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSF 92 (495)
Q Consensus 14 ~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~-~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l 92 (495)
.+.+...+++|++++ +.++.|.. ++ .+ .+|+.|++++| .+..++. +..+++|++|++++| .++++
T Consensus 14 ~~~n~~~~~~L~L~~-n~I~~Ie~------L~~~l----~~L~~L~Ls~N-~I~~l~~-l~~L~~L~~L~L~~N-~I~~i 79 (175)
T PF14580_consen 14 QYNNPVKLRELNLRG-NQISTIEN------LGATL----DKLEVLDLSNN-QITKLEG-LPGLPRLKTLDLSNN-RISSI 79 (175)
T ss_dssp -----------------------S--------TT-----TT--EEE-TTS---S--TT-----TT--EEE--SS----S-
T ss_pred ccccccccccccccc-cccccccc------hhhhh----cCCCEEECCCC-CCccccC-ccChhhhhhcccCCC-CCCcc
Confidence 344555678888888 56776533 33 34 77888888887 5566653 667788888888886 67666
Q ss_pred CC-C-CCCCCCcEEEEeCCCCCCccccccccCCCCCccEEecccCc
Q 011033 93 PE-V-ALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCR 136 (495)
Q Consensus 93 ~~-~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 136 (495)
+. + ..+++|+.|++++|. +.++..-..-..+++|+.|++.+|+
T Consensus 80 ~~~l~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 80 SEGLDKNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp CHHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-G
T ss_pred ccchHHhCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCc
Confidence 53 3 347788888888776 3333321111223778888887765
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.71 E-value=5.6e-09 Score=88.83 Aligned_cols=136 Identities=21% Similarity=0.271 Sum_probs=48.8
Q ss_pred CCCccceeEeeccCccchhhhcccccCC-CCCccceEEeeccccccccchhhhccccccCCCCCCCceeeeccccccccc
Q 011033 336 LPTNLHSLHIWGNMEIWKSMIERGRGFH-RFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERL 414 (495)
Q Consensus 336 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l 414 (495)
.+..+++|++.+|.... + ..+. .+.+|+.|++++| .+..++.-. .++.|+.|++++ +.++++
T Consensus 17 n~~~~~~L~L~~n~I~~--I----e~L~~~l~~L~~L~Ls~N--~I~~l~~l~--------~L~~L~~L~L~~-N~I~~i 79 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIST--I----ENLGATLDKLEVLDLSNN--QITKLEGLP--------GLPRLKTLDLSN-NRISSI 79 (175)
T ss_dssp -------------------------S--TT-TT--EEE-TTS----S--TT------------TT--EEE--S-S---S-
T ss_pred ccccccccccccccccc--c----cchhhhhcCCCEEECCCC--CCccccCcc--------ChhhhhhcccCC-CCCCcc
Confidence 34455666666665211 1 1233 4566777777777 666655432 456788888888 777777
Q ss_pred cccc-ccCCCCCeEeccCCCCCCCCCCC---CCccccceeeccCCchhHHh-hhcCCCeeeecceEEeccCccccccccc
Q 011033 415 SSSI-VDLQNLTHLNLVDCPKLKYFPEK---GLPSSLLQLSIYRCPLMEEK-CRKDGGLLTHIPSVQIDLNGFLTAEQRT 489 (495)
Q Consensus 415 ~~~~-~~~~~L~~L~l~~c~~l~~l~~~---~~~~~L~~L~l~~c~~l~~~-~~~~~~~i~~~~~~~i~~~~~~~~~~~~ 489 (495)
...+ ..+|+|++|++++ +++..+..- ..+++|++|++.+||..... +... -+.++|+++..|...++..++-
T Consensus 80 ~~~l~~~lp~L~~L~L~~-N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~--vi~~lP~Lk~LD~~~V~~~ER~ 156 (175)
T PF14580_consen 80 SEGLDKNLPNLQELYLSN-NKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLF--VIYKLPSLKVLDGQDVTEEERQ 156 (175)
T ss_dssp CHHHHHH-TT--EEE-TT-S---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHH--HHHH-TT-SEETTEETTS-B--
T ss_pred ccchHHhCCcCCEEECcC-CcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHH--HHHHcChhheeCCEEccHHHhc
Confidence 6544 4678888888887 557666542 23688888888888854221 0000 5778888888877777776665
Q ss_pred ee
Q 011033 490 TE 491 (495)
Q Consensus 490 ~~ 491 (495)
++
T Consensus 157 ~A 158 (175)
T PF14580_consen 157 EA 158 (175)
T ss_dssp --
T ss_pred cc
Confidence 54
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=4.1e-09 Score=98.55 Aligned_cols=239 Identities=13% Similarity=0.117 Sum_probs=128.5
Q ss_pred CCCCCCcEEeeeCCCCCCccc--ccCCCCCCccEEEeeCCCCcc---ccCCCCCCCCCCcEEEecCccccccccc-cccC
Q 011033 242 DNNTSLETINISGCENLKILP--SGLHNLGQLQEIEIWECENLV---SFPEGGLPCAKLSKLRIYGCERLEALPK-GLHN 315 (495)
Q Consensus 242 ~~~~~L~~L~l~~~~~~~~l~--~~~~~l~~L~~L~l~~~~~l~---~l~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~ 315 (495)
.++++|+++.+.++ .+...+ .....|++++.|+++.| .+. .+......+|+|+.|+++.|....-... .-..
T Consensus 118 sn~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~ 195 (505)
T KOG3207|consen 118 SNLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL 195 (505)
T ss_pred hhHHhhhheeecCc-cccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence 35677788877763 344333 24556788888888887 333 3334566777888888887753322211 1124
Q ss_pred CCCcceeEecc-cccc--ccC-CCCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhcccc
Q 011033 316 LTSLQQLTIGG-ELPS--LEE-DGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLG 391 (495)
Q Consensus 316 l~~L~~L~l~~-~l~~--~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 391 (495)
+++|+.|.++. ++.. +.. ...+|+|+.|++.+|..+..... ....+..|++|++++| ++..++...
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~----~~~i~~~L~~LdLs~N--~li~~~~~~---- 265 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKAT----STKILQTLQELDLSNN--NLIDFDQGY---- 265 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecc----hhhhhhHHhhccccCC--ccccccccc----
Confidence 56777777766 3331 111 13467777777777742221111 2334556777777776 444443211
Q ss_pred ccCCCCCCCceeeecccccccccc--cc-----cccCCCCCeEeccCCCCCCCCCC---CCCccccceeeccCCchhHHh
Q 011033 392 TALPLPASLTSLRIVDFPNLERLS--SS-----IVDLQNLTHLNLVDCPKLKYFPE---KGLPSSLLQLSIYRCPLMEEK 461 (495)
Q Consensus 392 ~~~~~~~~L~~L~l~~~~~l~~l~--~~-----~~~~~~L~~L~l~~c~~l~~l~~---~~~~~~L~~L~l~~c~~l~~~ 461 (495)
....++.|+.|.++. ..+.++- .. ...+++|++|++..+ ++++.+. ...+++|+.|.+.+++.-++.
T Consensus 266 -~~~~l~~L~~Lnls~-tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N-~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~ 342 (505)
T KOG3207|consen 266 -KVGTLPGLNQLNLSS-TGIASIAEPDVESLDKTHTFPKLEYLNISEN-NIRDWRSLNHLRTLENLKHLRITLNYLNKET 342 (505)
T ss_pred -ccccccchhhhhccc-cCcchhcCCCccchhhhcccccceeeecccC-ccccccccchhhccchhhhhhcccccccccc
Confidence 011455677777776 3444432 11 345677777777773 3544443 223566666666666544443
Q ss_pred hhcCCCeeeecceEEeccCccccccccceeeecC
Q 011033 462 CRKDGGLLTHIPSVQIDLNGFLTAEQRTTEIFYY 495 (495)
Q Consensus 462 ~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~ 495 (495)
..+..--|+.++++.-.+..-..+..+-.+..||
T Consensus 343 ~~a~~~VIAr~~~l~~LN~~di~p~eRR~AEl~~ 376 (505)
T KOG3207|consen 343 DTAKLLVIARISQLVKLNDVDISPNERRDAELYY 376 (505)
T ss_pred cceeEEeeeehhhhhhhcccccChHHhhhhhhhH
Confidence 3221114666666555555555555554444333
No 31
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=9.9e-10 Score=97.61 Aligned_cols=61 Identities=16% Similarity=0.225 Sum_probs=29.3
Q ss_pred CCccEEEeecCCCch-hhhhhcCCCCCCcEEeeeCCCCCCc-ccccCCCCCCccEEEeeCCCC
Q 011033 221 PSLKSLFVWYCPKLE-SIAERLDNNTSLETINISGCENLKI-LPSGLHNLGQLQEIEIWECEN 281 (495)
Q Consensus 221 ~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~-l~~~~~~l~~L~~L~l~~~~~ 281 (495)
|+|.+|++++|..+. .....+..++.|+.|.+++|..+.- ..-.+...|+|.+|++.+|-.
T Consensus 313 p~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 313 PNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred CceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccC
Confidence 344444444443322 2233455566666666666654421 111244456666666666533
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.62 E-value=1.4e-09 Score=104.91 Aligned_cols=187 Identities=24% Similarity=0.303 Sum_probs=125.5
Q ss_pred cEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCccccccccccccCCCCcceeEecc-
Q 011033 248 ETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG- 326 (495)
Q Consensus 248 ~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~- 326 (495)
...+++. +...++|..+..+..|+.+.+..| .+..+|.....+..|+.++++.|+ +..+|..++.++ |+.|-+++
T Consensus 78 ~~aDlsr-NR~~elp~~~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 78 VFADLSR-NRFSELPEEACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLIVSNN 153 (722)
T ss_pred hhhhccc-cccccCchHHHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-ceeEEEecC
Confidence 3344554 344555555555566666666655 455566555555566666666654 455555555554 56666666
Q ss_pred ccccccCC-CCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccCCCCCCCceeee
Q 011033 327 ELPSLEED-GLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRI 405 (495)
Q Consensus 327 ~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 405 (495)
+++.+|.. +..+.|..|+++.|...+ ... .++++.+|+.|.+..| .+..++.+-. . -.|..||+
T Consensus 154 kl~~lp~~ig~~~tl~~ld~s~nei~s-lps----ql~~l~slr~l~vrRn--~l~~lp~El~-------~-LpLi~lDf 218 (722)
T KOG0532|consen 154 KLTSLPEEIGLLPTLAHLDVSKNEIQS-LPS----QLGYLTSLRDLNVRRN--HLEDLPEELC-------S-LPLIRLDF 218 (722)
T ss_pred ccccCCcccccchhHHHhhhhhhhhhh-chH----HhhhHHHHHHHHHhhh--hhhhCCHHHh-------C-Cceeeeec
Confidence 66666554 456677777777776433 222 4778888999999987 8888887651 2 36899999
Q ss_pred cccccccccccccccCCCCCeEeccCCCCCCCCCC----CCCccccceeeccCC
Q 011033 406 VDFPNLERLSSSIVDLQNLTHLNLVDCPKLKYFPE----KGLPSSLLQLSIYRC 455 (495)
Q Consensus 406 ~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~----~~~~~~L~~L~l~~c 455 (495)
+. +++..||..+.++..|++|-+.+++ +++=|. .+..--.++|++.-|
T Consensus 219 Sc-Nkis~iPv~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 219 SC-NKISYLPVDFRKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred cc-CceeecchhhhhhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhc
Confidence 98 9999999999999999999999977 666443 344445677777777
No 33
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.52 E-value=6.8e-07 Score=85.52 Aligned_cols=93 Identities=31% Similarity=0.567 Sum_probs=61.8
Q ss_pred cCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCccccccccccccCCCCcc
Q 011033 241 LDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQ 320 (495)
Q Consensus 241 ~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 320 (495)
+..+.+++.|++++| .+..+|. + .++|++|.+++|..++.+|..+ +++|+.|++++|..+..+|. +|+
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVR 115 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccc
Confidence 444688889999887 6777762 2 2468899998888887777644 24889999988876666654 456
Q ss_pred eeEecc-ccccccCCCCCCccceeEeec
Q 011033 321 QLTIGG-ELPSLEEDGLPTNLHSLHIWG 347 (495)
Q Consensus 321 ~L~l~~-~l~~~~~~~~~~~L~~L~l~~ 347 (495)
.|++.. ....+ ...|++|++|.+.+
T Consensus 116 ~L~L~~n~~~~L--~~LPssLk~L~I~~ 141 (426)
T PRK15386 116 SLEIKGSATDSI--KNVPNGLTSLSINS 141 (426)
T ss_pred eEEeCCCCCccc--ccCcchHhheeccc
Confidence 666655 33332 23455677766644
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.51 E-value=1.1e-07 Score=94.17 Aligned_cols=175 Identities=23% Similarity=0.326 Sum_probs=128.7
Q ss_pred cCCCCCCcEEeeeCCCCCCcccccCCCCC-CccEEEeeCCCCccccCCCCCCCCCCcEEEecCccccccccccccCCCCc
Q 011033 241 LDNNTSLETINISGCENLKILPSGLHNLG-QLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSL 319 (495)
Q Consensus 241 ~~~~~~L~~L~l~~~~~~~~l~~~~~~l~-~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L 319 (495)
+...+.++.|++.+ ..+..++......+ +|+.|+++.| .+..++.....+++|+.|++++|+ +.++|......++|
T Consensus 112 ~~~~~~l~~L~l~~-n~i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L 188 (394)
T COG4886 112 LLELTNLTSLDLDN-NNITDIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNL 188 (394)
T ss_pred hhcccceeEEecCC-cccccCccccccchhhccccccccc-chhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhh
Confidence 33447788888877 55666766666664 8899999887 677776666777889999998875 67776655578889
Q ss_pred ceeEecc-ccccccCC-CCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccCCCC
Q 011033 320 QQLTIGG-ELPSLEED-GLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLP 397 (495)
Q Consensus 320 ~~L~l~~-~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 397 (495)
+.|++++ .+..++.. +.+..|+++.+++|..+... ..+.++.++..+.+.++ .+..++... ..+
T Consensus 189 ~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~-----~~~~~~~~l~~l~l~~n--~~~~~~~~~-------~~l 254 (394)
T COG4886 189 NNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELL-----SSLSNLKNLSGLELSNN--KLEDLPESI-------GNL 254 (394)
T ss_pred hheeccCCccccCchhhhhhhhhhhhhhcCCcceecc-----hhhhhcccccccccCCc--eeeeccchh-------ccc
Confidence 9999988 88888776 46667999999999633311 24677777887877776 555433322 256
Q ss_pred CCCceeeecccccccccccccccCCCCCeEeccCCCC
Q 011033 398 ASLTSLRIVDFPNLERLSSSIVDLQNLTHLNLVDCPK 434 (495)
Q Consensus 398 ~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~ 434 (495)
++++.|++++ +.+.+++. +....+|+.|+++++..
T Consensus 255 ~~l~~L~~s~-n~i~~i~~-~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 255 SNLETLDLSN-NQISSISS-LGSLTNLRELDLSGNSL 289 (394)
T ss_pred cccceecccc-cccccccc-ccccCccCEEeccCccc
Confidence 6799999999 78888885 88889999999998543
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.49 E-value=3.9e-08 Score=87.74 Aligned_cols=126 Identities=18% Similarity=0.197 Sum_probs=58.1
Q ss_pred CCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCccccccccccccCCCCcceeEecc-ccccccCC-CCCCcccee
Q 011033 266 HNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSLEED-GLPTNLHSL 343 (495)
Q Consensus 266 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~-~~~~~L~~L 343 (495)
..+..|+.+++++| .++.+.....-.|.++.|++++|. +..+. .+..+++|..||+++ .+..+... ...-+++.|
T Consensus 281 dTWq~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~N~-i~~v~-nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 281 DTWQELTELDLSGN-LITQIDESVKLAPKLRRLILSQNR-IRTVQ-NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTL 357 (490)
T ss_pred chHhhhhhcccccc-chhhhhhhhhhccceeEEeccccc-eeeeh-hhhhcccceEeecccchhHhhhhhHhhhcCEeee
Confidence 33445555555555 444554444444555555555543 22232 245555555555555 33333221 123445555
Q ss_pred EeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccCCCCCCCceeeecc
Q 011033 344 HIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVD 407 (495)
Q Consensus 344 ~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 407 (495)
.+++|..-+ . .+++++-+|..|++++| +++.+....+ ...+|-|+.+.+.+
T Consensus 358 ~La~N~iE~-L-----SGL~KLYSLvnLDl~~N--~Ie~ldeV~~-----IG~LPCLE~l~L~~ 408 (490)
T KOG1259|consen 358 KLAQNKIET-L-----SGLRKLYSLVNLDLSSN--QIEELDEVNH-----IGNLPCLETLRLTG 408 (490)
T ss_pred ehhhhhHhh-h-----hhhHhhhhheecccccc--chhhHHHhcc-----cccccHHHHHhhcC
Confidence 555554111 1 13455555566666665 4444433110 01334555555555
No 36
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.47 E-value=8.6e-09 Score=93.82 Aligned_cols=221 Identities=18% Similarity=0.126 Sum_probs=107.9
Q ss_pred CCccEEEeecCCCchhh----hhhcCCCCCCcEEeeeCCCCCC----cc-------cccCCCCCCccEEEeeCCCCcccc
Q 011033 221 PSLKSLFVWYCPKLESI----AERLDNNTSLETINISGCENLK----IL-------PSGLHNLGQLQEIEIWECENLVSF 285 (495)
Q Consensus 221 ~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~----~l-------~~~~~~l~~L~~L~l~~~~~l~~l 285 (495)
.+++.+++++|.....- ...+.+.++|+..+++.- ..+ .+ ..++..+++|++|++|.|..-...
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 56889999988765533 334566778888877652 111 12 334556778888888888432222
Q ss_pred C----CCCCCCCCCcEEEecCccccccccc-cccCCCCcceeEeccccccccCCCCCCccceeEeeccCccchhhhcccc
Q 011033 286 P----EGGLPCAKLSKLRIYGCERLEALPK-GLHNLTSLQQLTIGGELPSLEEDGLPTNLHSLHIWGNMEIWKSMIERGR 360 (495)
Q Consensus 286 ~----~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 360 (495)
+ ..+..|.+|++|.+.+|- +..... .++ ..|..|.. -...+.++.|+.+...+|+.-......--.
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~--~al~~l~~------~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~ 179 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLG--RALFELAV------NKKAASKPKLRVFICGRNRLENGGATALAE 179 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHH--HHHHHHHH------HhccCCCcceEEEEeeccccccccHHHHHH
Confidence 2 233456788888888773 322111 000 00111110 001223455566655555532222211112
Q ss_pred cCCCCCccceEEeeccccccccchhhhccccccCCCCCCCceeeecccccccc-----cccccccCCCCCeEeccCCCCC
Q 011033 361 GFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLER-----LSSSIVDLQNLTHLNLVDCPKL 435 (495)
Q Consensus 361 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-----l~~~~~~~~~L~~L~l~~c~~l 435 (495)
.++..+.|+.+.++.|....+.+.... .++...++|++||+.+ +.++. +...+..++.|++|++++|. +
T Consensus 180 ~~~~~~~leevr~~qN~I~~eG~~al~----eal~~~~~LevLdl~D-Ntft~egs~~LakaL~s~~~L~El~l~dcl-l 253 (382)
T KOG1909|consen 180 AFQSHPTLEEVRLSQNGIRPEGVTALA----EALEHCPHLEVLDLRD-NTFTLEGSVALAKALSSWPHLRELNLGDCL-L 253 (382)
T ss_pred HHHhccccceEEEecccccCchhHHHH----HHHHhCCcceeeeccc-chhhhHHHHHHHHHhcccchheeecccccc-c
Confidence 345555666666666532222221111 1223445666666666 33322 22244555666666666664 3
Q ss_pred CCCCCC-------CCccccceeeccCCch
Q 011033 436 KYFPEK-------GLPSSLLQLSIYRCPL 457 (495)
Q Consensus 436 ~~l~~~-------~~~~~L~~L~l~~c~~ 457 (495)
+.-... ...|+|+++.+.+|..
T Consensus 254 ~~~Ga~a~~~al~~~~p~L~vl~l~gNeI 282 (382)
T KOG1909|consen 254 ENEGAIAFVDALKESAPSLEVLELAGNEI 282 (382)
T ss_pred ccccHHHHHHHHhccCCCCceeccCcchh
Confidence 332110 0145666666666643
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.41 E-value=8.4e-08 Score=85.61 Aligned_cols=203 Identities=18% Similarity=0.202 Sum_probs=105.0
Q ss_pred HhhhhhcccccceeecccccCC--------ccccccccCCCCccEEEEeCCCCCCCCCC-CCCCCCCcEEEEeCCCCCCc
Q 011033 44 QQQLCELSCRLEYLRLSYCEGL--------VKLPQSSLSLSSLREIEIYKCSSLVSFPE-VALPSKLKIIEIEGCDALKS 114 (495)
Q Consensus 44 ~~~l~~~~~~L~~L~ls~~~~l--------~~l~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~L~~L~l~~~~~~~~ 114 (495)
|+++-.++..|.+|.+++.... ..+|..+.-+++|+.+.++.| ....+-. ...-+.|+.+.+.+.. +..
T Consensus 174 ~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~-~~~~i~~~~~~kptl~t~~v~~s~-~~~ 251 (490)
T KOG1259|consen 174 FSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSAL-STENIVDIELLKPTLQTICVHNTT-IQD 251 (490)
T ss_pred hHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeecc-chhheeceeecCchhheeeeeccc-ccc
Confidence 6666667788999988865221 123444556788999999888 3333333 3345678888777644 222
Q ss_pred cccccc----------------------cCCCCCccEEecccCccccccccc-cCCCCccEEEeccCCCccccccccccc
Q 011033 115 LPEAWM----------------------CDTNSSLETLYIEHCRTLTYLAGV-QLPRSLKRLDILSCDNIRTLTVEEGIQ 171 (495)
Q Consensus 115 ~~~~~~----------------------~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~ 171 (495)
.|.-.. -...+.|+++++++ +.++.+... ...|.++.|+++++ .+..+
T Consensus 252 ~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~-N~I~~iDESvKL~Pkir~L~lS~N-~i~~v------- 322 (490)
T KOG1259|consen 252 VPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSG-NLITQIDESVKLAPKLRRLILSQN-RIRTV------- 322 (490)
T ss_pred cccccchhhhcCccCCCCCccCCceEEecchHhhhhhccccc-cchhhhhhhhhhccceeEEecccc-ceeee-------
Confidence 221110 00013344444444 223333332 33344444444431 22111
Q ss_pred cCCCCccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEe
Q 011033 172 SSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETIN 251 (495)
Q Consensus 172 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 251 (495)
.++. ..++|+.|++++|.. ..+.-|-..+.|+++|.
T Consensus 323 ------------------------~nLa-------------------~L~~L~~LDLS~N~L-s~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 323 ------------------------QNLA-------------------ELPQLQLLDLSGNLL-AECVGWHLKLGNIKTLK 358 (490)
T ss_pred ------------------------hhhh-------------------hcccceEeecccchh-HhhhhhHhhhcCEeeee
Confidence 0111 115666666665432 22333334556667777
Q ss_pred eeCCCCCCcccccCCCCCCccEEEeeCCCCccccCC--CCCCCCCCcEEEecCcc
Q 011033 252 ISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPE--GGLPCAKLSKLRIYGCE 304 (495)
Q Consensus 252 l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~--~~~~~~~L~~L~l~~~~ 304 (495)
+.. +.+..+ .+++++.+|..|++++| .++.+.. .++.+|.|+++.+.+|+
T Consensus 359 La~-N~iE~L-SGL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 359 LAQ-NKIETL-SGLRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhh-hhHhhh-hhhHhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCC
Confidence 766 334444 34566667777777776 4554442 45566667777666665
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.35 E-value=4.7e-07 Score=89.70 Aligned_cols=190 Identities=22% Similarity=0.263 Sum_probs=139.9
Q ss_pred EEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCC-CCcEEEecCccccccccccccCCCCcceeEecc-
Q 011033 249 TINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCA-KLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG- 326 (495)
Q Consensus 249 ~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~- 326 (495)
.+....+...... ..+..++.++.|++.++ .+.+++....... +|+.|+++++. +..+|..+..+++|+.|++++
T Consensus 97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNN-NITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCc-hhhhcccceeEEecCCc-ccccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCc
Confidence 4555553322222 33445578999999887 7888888777764 89999999975 777766789999999999999
Q ss_pred ccccccCCC-CCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccCCCCCCCceeee
Q 011033 327 ELPSLEEDG-LPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRI 405 (495)
Q Consensus 327 ~l~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 405 (495)
.+..++... ..+.|+.|++++|.... .. . .......|++|.+++| .....+... ....++..+.+
T Consensus 174 ~l~~l~~~~~~~~~L~~L~ls~N~i~~-l~-~---~~~~~~~L~~l~~~~N--~~~~~~~~~-------~~~~~l~~l~l 239 (394)
T COG4886 174 DLSDLPKLLSNLSNLNNLDLSGNKISD-LP-P---EIELLSALEELDLSNN--SIIELLSSL-------SNLKNLSGLEL 239 (394)
T ss_pred hhhhhhhhhhhhhhhhheeccCCcccc-Cc-h---hhhhhhhhhhhhhcCC--cceecchhh-------hhccccccccc
Confidence 888888775 88999999999998322 21 1 1234556999999997 333333322 23456777776
Q ss_pred cccccccccccccccCCCCCeEeccCCCCCCCCCCCCCccccceeeccCCch
Q 011033 406 VDFPNLERLSSSIVDLQNLTHLNLVDCPKLKYFPEKGLPSSLLQLSIYRCPL 457 (495)
Q Consensus 406 ~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~ 457 (495)
.+ +.++.++..+..++++++|++++ +.+..++..+-..+++.|+++++..
T Consensus 240 ~~-n~~~~~~~~~~~l~~l~~L~~s~-n~i~~i~~~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 240 SN-NKLEDLPESIGNLSNLETLDLSN-NQISSISSLGSLTNLRELDLSGNSL 289 (394)
T ss_pred CC-ceeeeccchhccccccceecccc-ccccccccccccCccCEEeccCccc
Confidence 66 67777677888999999999999 6688888755578999999998744
No 39
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=9.7e-09 Score=91.43 Aligned_cols=176 Identities=17% Similarity=0.195 Sum_probs=90.8
Q ss_pred CCcEEeeeCCCCCC--cccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCcccccccc--ccccCCCCcce
Q 011033 246 SLETINISGCENLK--ILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALP--KGLHNLTSLQQ 321 (495)
Q Consensus 246 ~L~~L~l~~~~~~~--~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~--~~l~~l~~L~~ 321 (495)
.|+.+++++. .+. .+..-+..|.+|+.|.+.++...+.+...+..-.+|+.|+++.|.+++... ..+.+++.|..
T Consensus 186 Rlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchh-heeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 5777777763 232 122234556777777777764333333333333477888888877776532 24566777777
Q ss_pred eEecc-cccc--c--cCCCCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccCCC
Q 011033 322 LTIGG-ELPS--L--EEDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPL 396 (495)
Q Consensus 322 L~l~~-~l~~--~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 396 (495)
|++++ .+.. + .....-++|..|+++|+........- --...++
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~-~tL~~rc------------------------------- 312 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHL-STLVRRC------------------------------- 312 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHH-HHHHHhC-------------------------------
Confidence 77766 2111 1 11123345555666555421100000 0012233
Q ss_pred CCCCceeeeccccccccc-ccccccCCCCCeEeccCCCCCCC--CCCCCCccccceeeccCC
Q 011033 397 PASLTSLRIVDFPNLERL-SSSIVDLQNLTHLNLVDCPKLKY--FPEKGLPSSLLQLSIYRC 455 (495)
Q Consensus 397 ~~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~--l~~~~~~~~L~~L~l~~c 455 (495)
++|..||+++|..++.= ...+..++.|++|.++.|..+.. +-...-.|+|.+|++-||
T Consensus 313 -p~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 313 -PNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred -CceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 45666666665555541 11455677777777777764422 111112567777777777
No 40
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.29 E-value=5.1e-06 Score=79.64 Aligned_cols=131 Identities=24% Similarity=0.443 Sum_probs=70.4
Q ss_pred CCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEe
Q 011033 221 PSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRI 300 (495)
Q Consensus 221 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l 300 (495)
..+++|++++| .+..+|. -.++|++|.+.+|..+..+|..+. ++|+.|++++|..+..+|. +|+.|++
T Consensus 52 ~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~------sLe~L~L 119 (426)
T PRK15386 52 RASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE------SVRSLEI 119 (426)
T ss_pred cCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc------ccceEEe
Confidence 56777777766 4555552 224577777777777666665442 5777777777765555443 5666666
Q ss_pred cCcc--ccccccccccCCCCcceeEecc--ccccc-cCCCCCCccceeEeeccCccchhhhcccccCCCCCccceEEeec
Q 011033 301 YGCE--RLEALPKGLHNLTSLQQLTIGG--ELPSL-EEDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEG 375 (495)
Q Consensus 301 ~~~~--~~~~~~~~l~~l~~L~~L~l~~--~l~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 375 (495)
.++. .+..+|. +|+.|.+.+ ..... .+...|++|++|.+.+|..+. .+. .+. .+|+.|.++.
T Consensus 120 ~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~--LP~---~LP--~SLk~L~ls~ 186 (426)
T PRK15386 120 KGSATDSIKNVPN------GLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII--LPE---KLP--ESLQSITLHI 186 (426)
T ss_pred CCCCCcccccCcc------hHhheeccccccccccccccccCCcccEEEecCCCccc--Ccc---ccc--ccCcEEEecc
Confidence 5432 2333432 455555533 11111 011345677777777766432 111 111 3666666655
Q ss_pred c
Q 011033 376 C 376 (495)
Q Consensus 376 ~ 376 (495)
+
T Consensus 187 n 187 (426)
T PRK15386 187 E 187 (426)
T ss_pred c
Confidence 4
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.28 E-value=9.1e-07 Score=61.59 Aligned_cols=58 Identities=26% Similarity=0.366 Sum_probs=40.4
Q ss_pred ccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCcccc-ccccCCCCccEEEEeCC
Q 011033 19 CSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLP-QSSLSLSSLREIEIYKC 86 (495)
Q Consensus 19 ~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~-~~~~~l~~L~~L~l~~~ 86 (495)
|+|++|++++ +.++.++++ +|.++ ++|++|++++| .+..++ ..|..+++|++|++++|
T Consensus 1 p~L~~L~l~~-n~l~~i~~~----~f~~l----~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSN-NKLTEIPPD----SFSNL----PNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETS-STESEECTT----TTTTG----TTESEEEETSS-SESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCC-CCCCccCHH----HHcCC----CCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCC
Confidence 4677777777 467777765 56777 77777777776 444444 45677777777777776
No 42
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.25 E-value=3.6e-08 Score=95.31 Aligned_cols=184 Identities=23% Similarity=0.307 Sum_probs=144.1
Q ss_pred CCCCcccccC--CCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCccccccccccccCCCCcceeEecc-cccccc
Q 011033 256 ENLKILPSGL--HNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSLE 332 (495)
Q Consensus 256 ~~~~~l~~~~--~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~ 332 (495)
..++.+|... ..+.--...+++.| .+..+|..+..|-.|+.+.++.|. +..+|..+..+..|..++++. .+..+|
T Consensus 60 rrlk~fpr~a~~~~ltdt~~aDlsrN-R~~elp~~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~NqlS~lp 137 (722)
T KOG0532|consen 60 RRLKEFPRGAASYDLTDTVFADLSRN-RFSELPEEACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSSNQLSHLP 137 (722)
T ss_pred chhhcCCCccccccccchhhhhcccc-ccccCchHHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhccchhhcCC
Confidence 4455554322 23344456778887 677888877777789999898864 777888999999999999999 888887
Q ss_pred CCCCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccCCCCCCCceeeeccccccc
Q 011033 333 EDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLE 412 (495)
Q Consensus 333 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 412 (495)
..-..--|+.|-+++|.. + ..+. .++....|.+|+.+.| .++.++...+ .+.+|+.|.+.. +++.
T Consensus 138 ~~lC~lpLkvli~sNNkl-~-~lp~---~ig~~~tl~~ld~s~n--ei~slpsql~-------~l~slr~l~vrR-n~l~ 202 (722)
T KOG0532|consen 138 DGLCDLPLKVLIVSNNKL-T-SLPE---EIGLLPTLAHLDVSKN--EIQSLPSQLG-------YLTSLRDLNVRR-NHLE 202 (722)
T ss_pred hhhhcCcceeEEEecCcc-c-cCCc---ccccchhHHHhhhhhh--hhhhchHHhh-------hHHHHHHHHHhh-hhhh
Confidence 764445688999988873 3 3333 4678889999999999 8888888653 567899999999 8999
Q ss_pred ccccccccCCCCCeEeccCCCCCCCCCCC-CCccccceeeccCCchh
Q 011033 413 RLSSSIVDLQNLTHLNLVDCPKLKYFPEK-GLPSSLLQLSIYRCPLM 458 (495)
Q Consensus 413 ~l~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~c~~l 458 (495)
.+|..+. .=.|..||++. +++..||.. ..+..|++|.+.++|.-
T Consensus 203 ~lp~El~-~LpLi~lDfSc-Nkis~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 203 DLPEELC-SLPLIRLDFSC-NKISYLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred hCCHHHh-CCceeeeeccc-CceeecchhhhhhhhheeeeeccCCCC
Confidence 9998777 45789999998 779999985 34899999999999854
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.16 E-value=2.1e-06 Score=59.76 Aligned_cols=57 Identities=25% Similarity=0.386 Sum_probs=45.1
Q ss_pred cccceeecccccCCcccc-ccccCCCCccEEEEeCCCCCCCCCC--CCCCCCCcEEEEeCCC
Q 011033 52 CRLEYLRLSYCEGLVKLP-QSSLSLSSLREIEIYKCSSLVSFPE--VALPSKLKIIEIEGCD 110 (495)
Q Consensus 52 ~~L~~L~ls~~~~l~~l~-~~~~~l~~L~~L~l~~~~~l~~l~~--~~~~~~L~~L~l~~~~ 110 (495)
|+|++|++++| .+..+| ..+..+++|++|++++| .++.+++ +..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 57888899887 667776 45788888999999887 6777765 7788888888888875
No 44
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.14 E-value=3.2e-07 Score=83.81 Aligned_cols=186 Identities=15% Similarity=0.140 Sum_probs=93.2
Q ss_pred cCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecC---CCchhhhh-------hcCCCCCCcEEe
Q 011033 182 YTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYC---PKLESIAE-------RLDNNTSLETIN 251 (495)
Q Consensus 182 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~---~~~~~~~~-------~~~~~~~L~~L~ 251 (495)
.+..+++++++++.+--+.. -..++. ...+. ++|+..+++.- .....+|+ .+..+++|++|+
T Consensus 27 ~~~~s~~~l~lsgnt~G~EA------a~~i~~-~L~~~-~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ld 98 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEA------ARAIAK-VLASK-KELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLD 98 (382)
T ss_pred cccCceEEEeccCCchhHHH------HHHHHH-HHhhc-ccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEee
Confidence 34667888888873221111 000000 11122 56777777642 11223333 456778999999
Q ss_pred eeCCCCCCcc----cccCCCCCCccEEEeeCCCCccccC--------------CCCCCCCCCcEEEecCccccc----cc
Q 011033 252 ISGCENLKIL----PSGLHNLGQLQEIEIWECENLVSFP--------------EGGLPCAKLSKLRIYGCERLE----AL 309 (495)
Q Consensus 252 l~~~~~~~~l----~~~~~~l~~L~~L~l~~~~~l~~l~--------------~~~~~~~~L~~L~l~~~~~~~----~~ 309 (495)
++.|-.-... -+-+..+..|++|++.+| ++.... .-....+.|+.+....|+.-. .+
T Consensus 99 LSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~ 177 (382)
T KOG1909|consen 99 LSDNAFGPKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATAL 177 (382)
T ss_pred ccccccCccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHH
Confidence 9996433222 233556899999999988 554321 122334577777777664221 12
Q ss_pred cccccCCCCcceeEecc-cccc--c---c-CCCCCCccceeEeeccCccchhhhcccccCCCCCccceEEeecc
Q 011033 310 PKGLHNLTSLQQLTIGG-ELPS--L---E-EDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGC 376 (495)
Q Consensus 310 ~~~l~~l~~L~~L~l~~-~l~~--~---~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 376 (495)
...+...+.|+.+.+.. .+.. + . ....++.|+.|++..|..-......-...+..+++|+.|++++|
T Consensus 178 A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc 251 (382)
T KOG1909|consen 178 AEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC 251 (382)
T ss_pred HHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence 22444556666666554 2211 1 0 01234555555555554322222111123444455555555555
No 45
>PLN03150 hypothetical protein; Provisional
Probab=98.06 E-value=8.9e-06 Score=84.76 Aligned_cols=68 Identities=25% Similarity=0.265 Sum_probs=35.0
Q ss_pred cccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCC-CCCCCCCcEEEEeCCCCCCcccccc
Q 011033 52 CRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE-VALPSKLKIIEIEGCDALKSLPEAW 119 (495)
Q Consensus 52 ~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~ 119 (495)
++|+.|+|++|...+.+|..++.+++|+.|++++|.....+|. ++.+++|+.|++++|.....+|..+
T Consensus 442 ~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l 510 (623)
T PLN03150 442 RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510 (623)
T ss_pred CCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHH
Confidence 5555555555544345555555555555555555533334443 4555555555555555444455443
No 46
>PLN03150 hypothetical protein; Provisional
Probab=97.98 E-value=1.5e-05 Score=83.05 Aligned_cols=105 Identities=19% Similarity=0.234 Sum_probs=53.9
Q ss_pred CcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCccccccccccccCCCCcceeEecc
Q 011033 247 LETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG 326 (495)
Q Consensus 247 L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 326 (495)
++.|+++++.....+|..+..+++|+.|++++|.....+|..+..+++|+.|++++|.....+|..+..+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 44555555443344455555556666666665533334554555555666666666554445555555666666666655
Q ss_pred -ccc-cccCC--CCCCccceeEeeccCcc
Q 011033 327 -ELP-SLEED--GLPTNLHSLHIWGNMEI 351 (495)
Q Consensus 327 -~l~-~~~~~--~~~~~L~~L~l~~~~~~ 351 (495)
.+. .+|.. .....+..+++.+|..+
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccc
Confidence 322 22221 11234455666666533
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.90 E-value=1.3e-05 Score=71.99 Aligned_cols=188 Identities=15% Similarity=0.151 Sum_probs=106.9
Q ss_pred CCCCCcEEeeeCCCCC--CcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCcccc-ccccccccCCCCc
Q 011033 243 NNTSLETINISGCENL--KILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERL-EALPKGLHNLTSL 319 (495)
Q Consensus 243 ~~~~L~~L~l~~~~~~--~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~~l~~L 319 (495)
.++.++++++.+|... .++.+-+.++|.|++|+++.|+.-..+.....+..+|+.|-+.+-... +.....+..+|++
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 4567777777775322 223333556788888888777544344433345567777777664221 1222345567777
Q ss_pred ceeEecc-ccccccC-----CCCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhcccccc
Q 011033 320 QQLTIGG-ELPSLEE-----DGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTA 393 (495)
Q Consensus 320 ~~L~l~~-~l~~~~~-----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 393 (495)
+.|+++. ....+-. ....+.++.|++.+|....-.-.. ...+.++++..+-+..| .+....... +
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~--~l~r~Fpnv~sv~v~e~--PlK~~s~ek-----~ 219 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKN--KLSRIFPNVNSVFVCEG--PLKTESSEK-----G 219 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHH--hHHhhcccchheeeecC--cccchhhcc-----c
Confidence 7777766 2322211 123356777777777632211111 13455677777777776 555544422 1
Q ss_pred CCCCCCCceeeeccccccccccc--ccccCCCCCeEeccCCCCCCCCCC
Q 011033 394 LPLPASLTSLRIVDFPNLERLSS--SIVDLQNLTHLNLVDCPKLKYFPE 440 (495)
Q Consensus 394 ~~~~~~L~~L~l~~~~~l~~l~~--~~~~~~~L~~L~l~~c~~l~~l~~ 440 (495)
+...+.+..|.+.. +++.++.. .+..++.|..|.++++|-...+..
T Consensus 220 se~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~ 267 (418)
T KOG2982|consen 220 SEPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG 267 (418)
T ss_pred CCCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccccC
Confidence 22344566666666 56666554 677788888888888775555443
No 48
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.87 E-value=1.1e-06 Score=89.67 Aligned_cols=214 Identities=23% Similarity=0.326 Sum_probs=117.2
Q ss_pred CCccEEEeecC-CCchhhh----hhcCCCCCCcEEeeeCCCCCCcc--cccCCCCCCccEEEeeCCCCcc--ccCCCCCC
Q 011033 221 PSLKSLFVWYC-PKLESIA----ERLDNNTSLETINISGCENLKIL--PSGLHNLGQLQEIEIWECENLV--SFPEGGLP 291 (495)
Q Consensus 221 ~~L~~L~l~~~-~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~l--~~~~~~l~~L~~L~l~~~~~l~--~l~~~~~~ 291 (495)
+.|+.|++.++ ......+ .....+++|+.|+++++..+.+. ......+++|+.|.+..|..++ .+......
T Consensus 214 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~ 293 (482)
T KOG1947|consen 214 PNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAER 293 (482)
T ss_pred chhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHh
Confidence 56777776652 2211111 12334567777777766544332 1112236677777766665443 22334555
Q ss_pred CCCCcEEEecCcccccc--ccccccCCCCcceeEeccccccccCCCCCCccceeEeeccCccc-hhhhcccccCCCCCcc
Q 011033 292 CAKLSKLRIYGCERLEA--LPKGLHNLTSLQQLTIGGELPSLEEDGLPTNLHSLHIWGNMEIW-KSMIERGRGFHRFSSL 368 (495)
Q Consensus 292 ~~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~l~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~l~~L 368 (495)
|++|++|++++|..++. +......+++++.+.+.. ...++.++.+.+.++.... +.... .....++++
T Consensus 294 ~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~-------~~~c~~l~~~~l~~~~~~~~d~~~~--~~~~~~~~l 364 (482)
T KOG1947|consen 294 CPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS-------LNGCPSLTDLSLSGLLTLTSDDLAE--LILRSCPKL 364 (482)
T ss_pred cCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh-------cCCCccHHHHHHHHhhccCchhHhH--HHHhcCCCc
Confidence 66777777777766532 222333455555554322 0114456666666555443 13322 356777778
Q ss_pred ceEEeeccccccccchhhhccccccCCCCCCCc-eeeecccccc-cccccccccCCCCCeEeccCCCCCCCCCCC--CC-
Q 011033 369 RHLTIEGCDDDMVSFPLEDKRLGTALPLPASLT-SLRIVDFPNL-ERLSSSIVDLQNLTHLNLVDCPKLKYFPEK--GL- 443 (495)
Q Consensus 369 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~l-~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~--~~- 443 (495)
+.+.+..| . -.... .+.+.+|+.+ ..+......+..++.|+++.|..++.-.-. ..
T Consensus 365 ~~~~l~~~--~-----------------~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~ 425 (482)
T KOG1947|consen 365 TDLSLSYC--G-----------------ISDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADS 425 (482)
T ss_pred chhhhhhh--h-----------------ccCcchHHHhcCCcccchHHHHHhccCCccceEecccCccccccchHHHhhh
Confidence 77777776 1 11222 4566777777 444433444455899999998866553221 11
Q ss_pred ccccceeeccCCchhHHhh
Q 011033 444 PSSLLQLSIYRCPLMEEKC 462 (495)
Q Consensus 444 ~~~L~~L~l~~c~~l~~~~ 462 (495)
+..+..+++.+|+.++...
T Consensus 426 ~~~~~~l~~~~~~~~~~~~ 444 (482)
T KOG1947|consen 426 CSNLKDLDLSGCRVITLKS 444 (482)
T ss_pred hhccccCCccCcccccchh
Confidence 5677888888887776543
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.85 E-value=1.4e-05 Score=50.95 Aligned_cols=38 Identities=24% Similarity=0.347 Sum_probs=18.5
Q ss_pred ccceeecccccCCccccccccCCCCccEEEEeCCCCCCCC
Q 011033 53 RLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSF 92 (495)
Q Consensus 53 ~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l 92 (495)
+|++|++++| .+.++|..++++++|++|++++| .++++
T Consensus 2 ~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N-~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNN-QITDLPPELSNLPNLETLNLSNN-PISDI 39 (44)
T ss_dssp T-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSS-CCSBE
T ss_pred cceEEEccCC-CCcccCchHhCCCCCCEEEecCC-CCCCC
Confidence 4555555554 33455544555555555555554 34443
No 50
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.74 E-value=5.9e-06 Score=82.11 Aligned_cols=214 Identities=21% Similarity=0.256 Sum_probs=97.0
Q ss_pred CCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEe
Q 011033 221 PSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRI 300 (495)
Q Consensus 221 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l 300 (495)
.+++.+++.++.... +...+..+++|+.|++++ +.+..+ ..+..++.|+.|++++| .+..+... ..+++|+.+++
T Consensus 95 ~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~-N~I~~i-~~l~~l~~L~~L~l~~N-~i~~~~~~-~~l~~L~~l~l 169 (414)
T KOG0531|consen 95 KSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSF-NKITKL-EGLSTLTLLKELNLSGN-LISDISGL-ESLKSLKLLDL 169 (414)
T ss_pred cceeeeeccccchhh-cccchhhhhcchheeccc-cccccc-cchhhccchhhheeccC-cchhccCC-ccchhhhcccC
Confidence 456666665443222 111144556666666665 334433 23444555666666665 33333321 12445666666
Q ss_pred cCcccccccccc-ccCCCCcceeEecc-ccccccCCCCCCccceeEeeccCccchhhhcccccCCCCCc--cceEEeecc
Q 011033 301 YGCERLEALPKG-LHNLTSLQQLTIGG-ELPSLEEDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSS--LRHLTIEGC 376 (495)
Q Consensus 301 ~~~~~~~~~~~~-l~~l~~L~~L~l~~-~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~--L~~L~l~~~ 376 (495)
++|. +..+... ...+.+++.+++.+ .+..+........+..+++..|..... ..+..+.. |+.+.++++
T Consensus 170 ~~n~-i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~------~~l~~~~~~~L~~l~l~~n 242 (414)
T KOG0531|consen 170 SYNR-IVDIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKL------EGLNELVMLHLRELYLSGN 242 (414)
T ss_pred Ccch-hhhhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceec------cCcccchhHHHHHHhcccC
Confidence 6654 3333211 34555566666555 443333222233333334444431110 11222222 666666665
Q ss_pred ccccccchhhhccccccCCCCCCCceeeecccccccccccccccCCCCCeEeccCCCCCCC---CCC--CCCccccceee
Q 011033 377 DDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSSIVDLQNLTHLNLVDCPKLKY---FPE--KGLPSSLLQLS 451 (495)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~---l~~--~~~~~~L~~L~ 451 (495)
++...+.. ...++.+..|++.+ +.+..+. .+...+.+..+...+...... ... ....+.++...
T Consensus 243 --~i~~~~~~-------~~~~~~l~~l~~~~-n~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (414)
T KOG0531|consen 243 --RISRSPEG-------LENLKNLPVLDLSS-NRISNLE-GLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLT 311 (414)
T ss_pred --cccccccc-------ccccccccccchhh-ccccccc-cccccchHHHhccCcchhcchhhhhccccccccccccccc
Confidence 44444211 12345666666666 4444433 344445555555555331111 111 12245666666
Q ss_pred ccCCch
Q 011033 452 IYRCPL 457 (495)
Q Consensus 452 l~~c~~ 457 (495)
+.++|.
T Consensus 312 ~~~~~~ 317 (414)
T KOG0531|consen 312 LELNPI 317 (414)
T ss_pred cccCcc
Confidence 666653
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.70 E-value=2.2e-05 Score=81.76 Aligned_cols=128 Identities=16% Similarity=0.149 Sum_probs=79.1
Q ss_pred ccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCc-cccccccCCCCccEEEEeCCCCCCCCCCCCC
Q 011033 19 CSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLV-KLPQSSLSLSSLREIEIYKCSSLVSFPEVAL 97 (495)
Q Consensus 19 ~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~-~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~ 97 (495)
.+|+.|++++-. .+..+ |...++.-+|.|+.|.+++-.... +......++++|..||++++ .++.+..++.
T Consensus 122 ~nL~~LdI~G~~---~~s~~----W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl~GIS~ 193 (699)
T KOG3665|consen 122 QNLQHLDISGSE---LFSNG----WPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNLSGISR 193 (699)
T ss_pred HhhhhcCccccc---hhhcc----HHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCcHHHhc
Confidence 357788887732 22332 555666667888888887743222 22233557888888888885 7777766777
Q ss_pred CCCCcEEEEeCCCCCCccc--cccccCCCCCccEEecccCccccc-------cccccCCCCccEEEecc
Q 011033 98 PSKLKIIEIEGCDALKSLP--EAWMCDTNSSLETLYIEHCRTLTY-------LAGVQLPRSLKRLDILS 157 (495)
Q Consensus 98 ~~~L~~L~l~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~l~~-------~~~~~~~~~L~~L~l~~ 157 (495)
+++|+.|.+.+-. ++... .+++.+ ++|+.||++....... +.....+|+|+.|+.++
T Consensus 194 LknLq~L~mrnLe-~e~~~~l~~LF~L--~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 194 LKNLQVLSMRNLE-FESYQDLIDLFNL--KKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred cccHHHHhccCCC-CCchhhHHHHhcc--cCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 8888888777755 33222 244444 7788888877433221 11224577888888776
No 52
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.69 E-value=6e-06 Score=82.04 Aligned_cols=212 Identities=19% Similarity=0.202 Sum_probs=123.3
Q ss_pred CCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEe
Q 011033 221 PSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRI 300 (495)
Q Consensus 221 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l 300 (495)
..++.+.++.+.... ....+..+++|+.|++.+ +.+..+...+..+++|++|++++| .++.+.. ...++.|+.|++
T Consensus 72 ~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~-n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~~-l~~l~~L~~L~l 147 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYD-NKIEKIENLLSSLVNLQVLDLSFN-KITKLEG-LSTLTLLKELNL 147 (414)
T ss_pred HhHHhhccchhhhhh-hhcccccccceeeeeccc-cchhhcccchhhhhcchheecccc-ccccccc-hhhccchhhhee
Confidence 344555544333222 122355677778888877 445555333666788888888877 5555443 223335788888
Q ss_pred cCccccccccccccCCCCcceeEecc-ccccccC--CCCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccc
Q 011033 301 YGCERLEALPKGLHNLTSLQQLTIGG-ELPSLEE--DGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCD 377 (495)
Q Consensus 301 ~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 377 (495)
.+|. +..+. .+..+++|+.+++++ .+..+.. .....+++.+.+.+|...... .+..+..+..+++..+
T Consensus 148 ~~N~-i~~~~-~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~------~~~~~~~l~~~~l~~n- 218 (414)
T KOG0531|consen 148 SGNL-ISDIS-GLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIE------GLDLLKKLVLLSLLDN- 218 (414)
T ss_pred ccCc-chhcc-CCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhccc------chHHHHHHHHhhcccc-
Confidence 8774 55553 556677777788777 6666655 356677777777777632211 1222233333344444
Q ss_pred cccccchhhhccccccCCCCCC--CceeeecccccccccccccccCCCCCeEeccCCCCCCCCCCCCCccccceeeccCC
Q 011033 378 DDMVSFPLEDKRLGTALPLPAS--LTSLRIVDFPNLERLSSSIVDLQNLTHLNLVDCPKLKYFPEKGLPSSLLQLSIYRC 455 (495)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~--L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c 455 (495)
.+..+.... ..+. |+.+++.+ +.+..++..+..+..+..+++.+ +.+..+......+.+..+.....
T Consensus 219 -~i~~~~~l~--------~~~~~~L~~l~l~~-n~i~~~~~~~~~~~~l~~l~~~~-n~~~~~~~~~~~~~~~~~~~~~~ 287 (414)
T KOG0531|consen 219 -KISKLEGLN--------ELVMLHLRELYLSG-NRISRSPEGLENLKNLPVLDLSS-NRISNLEGLERLPKLSELWLNDN 287 (414)
T ss_pred -cceeccCcc--------cchhHHHHHHhccc-Cccccccccccccccccccchhh-ccccccccccccchHHHhccCcc
Confidence 333333311 1222 78888888 67777755777888888888888 44555544334455555555555
Q ss_pred c
Q 011033 456 P 456 (495)
Q Consensus 456 ~ 456 (495)
+
T Consensus 288 ~ 288 (414)
T KOG0531|consen 288 K 288 (414)
T ss_pred h
Confidence 4
No 53
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.57 E-value=8.3e-06 Score=83.14 Aligned_cols=115 Identities=26% Similarity=0.419 Sum_probs=63.9
Q ss_pred hhhcccccceeecccccCCcc--ccccccCCCCccEEEEeCC-CCCCCCC-----CCCCCCCCcEEEEeCCCCCCccccc
Q 011033 47 LCELSCRLEYLRLSYCEGLVK--LPQSSLSLSSLREIEIYKC-SSLVSFP-----EVALPSKLKIIEIEGCDALKSLPEA 118 (495)
Q Consensus 47 l~~~~~~L~~L~ls~~~~l~~--l~~~~~~l~~L~~L~l~~~-~~l~~l~-----~~~~~~~L~~L~l~~~~~~~~~~~~ 118 (495)
+...+++|+.|.+.+|..+.. +-.....++.|++|++++| ......+ ....+++|+.|+++.+..+.+..-.
T Consensus 183 l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~ 262 (482)
T KOG1947|consen 183 LLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLS 262 (482)
T ss_pred HHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHH
Confidence 333457777777777655554 3233556677777777662 2222222 1334567777777776654444433
Q ss_pred cccCCCCCccEEecccCccccccccc---cCCCCccEEEeccCCCc
Q 011033 119 WMCDTNSSLETLYIEHCRTLTYLAGV---QLPRSLKRLDILSCDNI 161 (495)
Q Consensus 119 ~~~~~~~~L~~L~l~~~~~l~~~~~~---~~~~~L~~L~l~~~~~l 161 (495)
.....|++|+.|.+.+|..++..... ..+++|++|++++|..+
T Consensus 263 ~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 263 ALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred HHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 33333567777776666554432211 44566777777777665
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.55 E-value=6.4e-05 Score=78.39 Aligned_cols=108 Identities=20% Similarity=0.239 Sum_probs=79.7
Q ss_pred ccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCC---
Q 011033 17 DICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFP--- 93 (495)
Q Consensus 17 ~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~--- 93 (495)
-||.|+.|.+.+ ..+.. ..|.+++..||+|+.||+|++ .+..+ .+++++++|+.|.+.+- .+....
T Consensus 146 ~LPsL~sL~i~~-~~~~~-------~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~L~mrnL-e~e~~~~l~ 214 (699)
T KOG3665|consen 146 MLPSLRSLVISG-RQFDN-------DDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQVLSMRNL-EFESYQDLI 214 (699)
T ss_pred hCcccceEEecC-ceecc-------hhHHHHhhccCccceeecCCC-CccCc-HHHhccccHHHHhccCC-CCCchhhHH
Confidence 599999999999 44432 248889999999999999996 66777 56899999999999876 333322
Q ss_pred CCCCCCCCcEEEEeCCCCCCcc--cccccc--CCCCCccEEecccC
Q 011033 94 EVALPSKLKIIEIEGCDALKSL--PEAWMC--DTNSSLETLYIEHC 135 (495)
Q Consensus 94 ~~~~~~~L~~L~l~~~~~~~~~--~~~~~~--~~~~~L~~L~l~~~ 135 (495)
.+..+++|+.||+|.-.....- ...+.. ..+|+|+.|+.++.
T Consensus 215 ~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 215 DLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred HHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence 3778999999999986533221 221111 22389999999984
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.53 E-value=0.0001 Score=46.92 Aligned_cols=39 Identities=10% Similarity=0.357 Sum_probs=28.3
Q ss_pred CCccEEEEeCCCCCCCCCC-CCCCCCCcEEEEeCCCCCCccc
Q 011033 76 SSLREIEIYKCSSLVSFPE-VALPSKLKIIEIEGCDALKSLP 116 (495)
Q Consensus 76 ~~L~~L~l~~~~~l~~l~~-~~~~~~L~~L~l~~~~~~~~~~ 116 (495)
++|++|++++| .++++|+ ++++++|+.|++++|. +.+++
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNNP-ISDIS 40 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred CcceEEEccCC-CCcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence 46888888887 7778887 8888888888888876 55444
No 56
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.46 E-value=4.6e-06 Score=83.40 Aligned_cols=106 Identities=25% Similarity=0.226 Sum_probs=76.5
Q ss_pred CCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccCCCCCCCceeeeccccccccc
Q 011033 335 GLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERL 414 (495)
Q Consensus 335 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l 414 (495)
...+.|+.|+++.|...+-. .+..++.|++||++.| .+..++.-. ..--.|..|.+++ +.++.+
T Consensus 184 qll~ale~LnLshNk~~~v~------~Lr~l~~LkhLDlsyN--~L~~vp~l~-------~~gc~L~~L~lrn-N~l~tL 247 (1096)
T KOG1859|consen 184 QLLPALESLNLSHNKFTKVD------NLRRLPKLKHLDLSYN--CLRHVPQLS-------MVGCKLQLLNLRN-NALTTL 247 (1096)
T ss_pred HHHHHhhhhccchhhhhhhH------HHHhcccccccccccc--hhccccccc-------hhhhhheeeeecc-cHHHhh
Confidence 44677888888888743311 4678899999999998 666665522 1112599999999 788887
Q ss_pred ccccccCCCCCeEeccCCCCCCCCCCC---CCccccceeeccCCchh
Q 011033 415 SSSIVDLQNLTHLNLVDCPKLKYFPEK---GLPSSLLQLSIYRCPLM 458 (495)
Q Consensus 415 ~~~~~~~~~L~~L~l~~c~~l~~l~~~---~~~~~L~~L~l~~c~~l 458 (495)
- ++.++.+|+.||+++ +-|...... ..+..|++|.+.|||..
T Consensus 248 ~-gie~LksL~~LDlsy-Nll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 248 R-GIENLKSLYGLDLSY-NLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred h-hHHhhhhhhccchhH-hhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 7 788999999999999 545443332 23688999999999854
No 57
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.43 E-value=1.1e-05 Score=80.75 Aligned_cols=101 Identities=18% Similarity=0.120 Sum_probs=75.4
Q ss_pred CccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccCCCCCCCceeeeccccccccccc-
Q 011033 338 TNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSS- 416 (495)
Q Consensus 338 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~- 416 (495)
..|...+++.|... .+. ..++=++.|+.|++++| ++..+..-- .++.|+.|||+. +.++.+|.
T Consensus 164 n~L~~a~fsyN~L~--~mD---~SLqll~ale~LnLshN--k~~~v~~Lr--------~l~~LkhLDlsy-N~L~~vp~l 227 (1096)
T KOG1859|consen 164 NKLATASFSYNRLV--LMD---ESLQLLPALESLNLSHN--KFTKVDNLR--------RLPKLKHLDLSY-NCLRHVPQL 227 (1096)
T ss_pred hhHhhhhcchhhHH--hHH---HHHHHHHHhhhhccchh--hhhhhHHHH--------hccccccccccc-chhcccccc
Confidence 35666666666521 111 35777888999999998 666666433 567999999999 88888886
Q ss_pred ccccCCCCCeEeccCCCCCCCCCCCCCccccceeeccCCc
Q 011033 417 SIVDLQNLTHLNLVDCPKLKYFPEKGLPSSLLQLSIYRCP 456 (495)
Q Consensus 417 ~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~ 456 (495)
....|. |+.|.+++ +.++++-....+.+|+.|++++|-
T Consensus 228 ~~~gc~-L~~L~lrn-N~l~tL~gie~LksL~~LDlsyNl 265 (1096)
T KOG1859|consen 228 SMVGCK-LQLLNLRN-NALTTLRGIENLKSLYGLDLSYNL 265 (1096)
T ss_pred chhhhh-heeeeecc-cHHHhhhhHHhhhhhhccchhHhh
Confidence 445565 99999999 678888776678999999999883
No 58
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.35 E-value=0.00015 Score=65.32 Aligned_cols=206 Identities=15% Similarity=0.139 Sum_probs=126.2
Q ss_pred CCCCccEEEeeCCCCccccC---CCCCCCCCCcEEEecCccccccccccc-cCCCCcceeEecc-cccc--ccC-CCCCC
Q 011033 267 NLGQLQEIEIWECENLVSFP---EGGLPCAKLSKLRIYGCERLEALPKGL-HNLTSLQQLTIGG-ELPS--LEE-DGLPT 338 (495)
Q Consensus 267 ~l~~L~~L~l~~~~~l~~l~---~~~~~~~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~-~l~~--~~~-~~~~~ 338 (495)
.++.++.+++.+| .+.++. .+...+|.|++|+++.|+.-..+ ..+ ....+|+.|-+.+ .+.. ... ....|
T Consensus 69 ~~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~L~s~I-~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP 146 (418)
T KOG2982|consen 69 SVTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNSLSSDI-KSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP 146 (418)
T ss_pred Hhhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCcCCCcc-ccCcccccceEEEEEcCCCCChhhhhhhhhcch
Confidence 4578899999998 555544 45667889999999987654433 223 3567888888877 3322 111 24466
Q ss_pred ccceeEeeccCc----cchhhhcccccCCC-CCccceEEeeccccccccchhhhccccccCCCCCCCceeeecccccccc
Q 011033 339 NLHSLHIWGNME----IWKSMIERGRGFHR-FSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLER 413 (495)
Q Consensus 339 ~L~~L~l~~~~~----~~~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 413 (495)
.+++|+++.|.. +++. .... -+.+++|+.-+| ..+...... .....++++..+.+.+|+- +.
T Consensus 147 ~vtelHmS~N~~rq~n~Dd~------c~e~~s~~v~tlh~~~c--~~~~w~~~~----~l~r~Fpnv~sv~v~e~Pl-K~ 213 (418)
T KOG2982|consen 147 KVTELHMSDNSLRQLNLDDN------CIEDWSTEVLTLHQLPC--LEQLWLNKN----KLSRIFPNVNSVFVCEGPL-KT 213 (418)
T ss_pred hhhhhhhccchhhhhccccc------cccccchhhhhhhcCCc--HHHHHHHHH----hHHhhcccchheeeecCcc-cc
Confidence 777888777731 1111 1111 235666777676 333222111 0113567888888888643 33
Q ss_pred ccc--ccccCCCCCeEeccCCCCCCCCCC---CCCccccceeeccCCchhHHhhhcCCC---eeeecceEEeccCccccc
Q 011033 414 LSS--SIVDLQNLTHLNLVDCPKLKYFPE---KGLPSSLLQLSIYRCPLMEEKCRKDGG---LLTHIPSVQIDLNGFLTA 485 (495)
Q Consensus 414 l~~--~~~~~~~L~~L~l~~c~~l~~l~~---~~~~~~L~~L~l~~c~~l~~~~~~~~~---~i~~~~~~~i~~~~~~~~ 485 (495)
... ....+|.+--|+++. +++.+..+ ..-+++|..|.+...|.....-. ++. .|+.++.+++.+++-++.
T Consensus 214 ~s~ek~se~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~-~err~llIaRL~~v~vLNGskIss 291 (418)
T KOG2982|consen 214 ESSEKGSEPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG-GERRFLLIARLTKVQVLNGSKISS 291 (418)
T ss_pred hhhcccCCCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccccC-CcceEEEEeeccceEEecCcccch
Confidence 222 455667777778877 45666433 12378999999999997654322 222 799999999988887776
Q ss_pred cccc
Q 011033 486 EQRT 489 (495)
Q Consensus 486 ~~~~ 489 (495)
.++.
T Consensus 292 ~er~ 295 (418)
T KOG2982|consen 292 RERK 295 (418)
T ss_pred hhhh
Confidence 6543
No 59
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.82 E-value=2.8e-05 Score=69.18 Aligned_cols=101 Identities=18% Similarity=0.227 Sum_probs=73.8
Q ss_pred ccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCC--
Q 011033 17 DICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE-- 94 (495)
Q Consensus 17 ~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~-- 94 (495)
.+.+.+.|+..+| ++++|.- ...| +.|+.|.||-| .+.++.. +..|++|++|+|+.| .+.++..
T Consensus 17 dl~~vkKLNcwg~-~L~DIsi------c~kM----p~lEVLsLSvN-kIssL~p-l~rCtrLkElYLRkN-~I~sldEL~ 82 (388)
T KOG2123|consen 17 DLENVKKLNCWGC-GLDDISI------CEKM----PLLEVLSLSVN-KISSLAP-LQRCTRLKELYLRKN-CIESLDELE 82 (388)
T ss_pred HHHHhhhhcccCC-CccHHHH------HHhc----ccceeEEeecc-ccccchh-HHHHHHHHHHHHHhc-ccccHHHHH
Confidence 3667889999996 5777633 5566 99999999987 6677654 788999999999997 6665544
Q ss_pred -CCCCCCCcEEEEeCCCCCCcccccccc---CCCCCccEEe
Q 011033 95 -VALPSKLKIIEIEGCDALKSLPEAWMC---DTNSSLETLY 131 (495)
Q Consensus 95 -~~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~ 131 (495)
+.++++|+.|-+..|+..+.-+..+.. ..+|+|+.|+
T Consensus 83 YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 83 YLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 778899999999998877665544321 1125666655
No 60
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.82 E-value=0.00032 Score=62.39 Aligned_cols=82 Identities=18% Similarity=0.118 Sum_probs=45.3
Q ss_pred CCccEEEeecCCCchhhhhh----cCCCCCCcEEeeeCCCCCC----cc-------cccCCCCCCccEEEeeCCCCcccc
Q 011033 221 PSLKSLFVWYCPKLESIAER----LDNNTSLETINISGCENLK----IL-------PSGLHNLGQLQEIEIWECENLVSF 285 (495)
Q Consensus 221 ~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~----~l-------~~~~~~l~~L~~L~l~~~~~l~~l 285 (495)
..++.+++++|...+.-..+ +.+-++|+..+++.- ..+ .+ ..++-+||+|+..++|.|..-...
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 56777888877766544443 334556666666542 111 11 234556777777777776432232
Q ss_pred CC----CCCCCCCCcEEEecCc
Q 011033 286 PE----GGLPCAKLSKLRIYGC 303 (495)
Q Consensus 286 ~~----~~~~~~~L~~L~l~~~ 303 (495)
|. .+..-..|++|.+++|
T Consensus 109 ~e~L~d~is~~t~l~HL~l~Nn 130 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNN 130 (388)
T ss_pred chHHHHHHhcCCCceeEEeecC
Confidence 22 2333446777777665
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.77 E-value=0.002 Score=54.97 Aligned_cols=102 Identities=16% Similarity=0.118 Sum_probs=67.7
Q ss_pred cccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCC--CCCCCCCcEEEEeCCCCCCccccccccCCCCCccE
Q 011033 52 CRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE--VALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLET 129 (495)
Q Consensus 52 ~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 129 (495)
.+...+||++| .+..++. +..+++|..|.+.+| .++.+.+ ...+++|..|.+.+|. +..+..--.-..|++|++
T Consensus 42 d~~d~iDLtdN-dl~~l~~-lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 42 DQFDAIDLTDN-DLRKLDN-LPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEY 117 (233)
T ss_pred cccceeccccc-chhhccc-CCCccccceEEecCC-cceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCccce
Confidence 67788888887 4455543 667888889999886 6776655 4457788889888876 333333222344588888
Q ss_pred EecccCccccccc-----cccCCCCccEEEeccC
Q 011033 130 LYIEHCRTLTYLA-----GVQLPRSLKRLDILSC 158 (495)
Q Consensus 130 L~l~~~~~l~~~~-----~~~~~~~L~~L~l~~~ 158 (495)
|.+-+++ ++... ....+|+|+.|++.+-
T Consensus 118 Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 118 LTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eeecCCc-hhcccCceeEEEEecCcceEeehhhh
Confidence 8887754 32221 1245678888887764
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.53 E-value=0.0052 Score=52.54 Aligned_cols=41 Identities=22% Similarity=0.105 Sum_probs=20.9
Q ss_pred CCCCCccceeEeeccCccchhhhcccccCCCCCccceEEeec
Q 011033 334 DGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEG 375 (495)
Q Consensus 334 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 375 (495)
...+|.|++|.+-+|+.-. .-..+...+..+|+|+.||..+
T Consensus 109 La~~p~L~~Ltll~Npv~~-k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 109 LASCPKLEYLTLLGNPVEH-KKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred hccCCccceeeecCCchhc-ccCceeEEEEecCcceEeehhh
Confidence 3445566666666665211 1111223566666666666655
No 63
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.32 E-value=0.00027 Score=56.23 Aligned_cols=34 Identities=15% Similarity=0.228 Sum_probs=16.4
Q ss_pred cccceeecccccCCccccccccCCCCccEEEEeCC
Q 011033 52 CRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKC 86 (495)
Q Consensus 52 ~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~ 86 (495)
+.++.|++++| .+.++|..+..++.|+.|+++.|
T Consensus 77 ~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl~~N 110 (177)
T KOG4579|consen 77 PTATTLNLANN-EISDVPEELAAMPALRSLNLRFN 110 (177)
T ss_pred chhhhhhcchh-hhhhchHHHhhhHHhhhcccccC
Confidence 44455555543 34444444444455555555444
No 64
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.16 E-value=0.0077 Score=53.91 Aligned_cols=39 Identities=15% Similarity=0.302 Sum_probs=22.6
Q ss_pred ccCCCCccEEEEeCCCCCCCCCC-----CCCCCCCcEEEEeCCC
Q 011033 72 SLSLSSLREIEIYKCSSLVSFPE-----VALPSKLKIIEIEGCD 110 (495)
Q Consensus 72 ~~~l~~L~~L~l~~~~~l~~l~~-----~~~~~~L~~L~l~~~~ 110 (495)
+-.|++|+.+++++|..-...|. +..-..|++|.+++|.
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC
Confidence 44566666666666643333332 5555666666666665
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.91 E-value=0.0038 Score=55.62 Aligned_cols=85 Identities=18% Similarity=0.229 Sum_probs=43.8
Q ss_pred hcccccceeecccccCCccccccccCCCCccEEEEeCC--CCCCCCCC-CCCCCCCcEEEEeCCCCCCccccccccCCCC
Q 011033 49 ELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKC--SSLVSFPE-VALPSKLKIIEIEGCDALKSLPEAWMCDTNS 125 (495)
Q Consensus 49 ~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~--~~l~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 125 (495)
..|..|+.|++.++.. .++. .+-.+++||+|.++.| .-...++. +..+++|++|++++|. +..+..--.-...+
T Consensus 40 d~~~~le~ls~~n~gl-tt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~pl~~l~ 116 (260)
T KOG2739|consen 40 DEFVELELLSVINVGL-TTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLRPLKELE 116 (260)
T ss_pred ccccchhhhhhhccce-eecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccchhhhhc
Confidence 3446666666666522 2222 1445667777777776 22223332 4455777777777765 22211110111225
Q ss_pred CccEEecccCc
Q 011033 126 SLETLYIEHCR 136 (495)
Q Consensus 126 ~L~~L~l~~~~ 136 (495)
+|..|++.+|.
T Consensus 117 nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 117 NLKSLDLFNCS 127 (260)
T ss_pred chhhhhcccCC
Confidence 56677776654
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.71 E-value=0.03 Score=45.37 Aligned_cols=105 Identities=15% Similarity=0.225 Sum_probs=49.8
Q ss_pred CccccccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccc-cccCCCCccEEEEeCCCCCC
Q 011033 12 NELLQDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQ-SSLSLSSLREIEIYKCSSLV 90 (495)
Q Consensus 12 ~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~-~~~~l~~L~~L~l~~~~~l~ 90 (495)
...|.++.+|+.+.+.+ .++.|... .|.+. ++|+.+++.++ +..++. .+..+++|+.+.+.+ .+.
T Consensus 5 ~~~F~~~~~l~~i~~~~--~~~~I~~~----~F~~~----~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~--~~~ 70 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN--TIKKIGEN----AFSNC----TSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN--NLK 70 (129)
T ss_dssp TTTTTT-TT--EEEETS--T--EE-TT----TTTT-----TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS--TT-
T ss_pred HHHHhCCCCCCEEEECC--CeeEeChh----hcccc----ccccccccccc--ccccceeeeecccccccccccc--ccc
Confidence 45566777777777765 35666554 45555 67777777663 444443 366666777777754 333
Q ss_pred CCCC--CCCCCCCcEEEEeCCCCCCccccccccCCCCCccEEeccc
Q 011033 91 SFPE--VALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEH 134 (495)
Q Consensus 91 ~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 134 (495)
.++. +..+++|+.+.+..+ +..++...+.. .+|+.+.+..
T Consensus 71 ~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~f~~--~~l~~i~~~~ 112 (129)
T PF13306_consen 71 SIGDNAFSNCTNLKNIDIPSN--ITEIGSSSFSN--CNLKEINIPS 112 (129)
T ss_dssp EE-TTTTTT-TTECEEEETTT---BEEHTTTTTT---T--EEE-TT
T ss_pred ccccccccccccccccccCcc--ccEEchhhhcC--CCceEEEECC
Confidence 3333 556777777777542 34444444322 2566666543
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.14 E-value=0.001 Score=59.50 Aligned_cols=99 Identities=19% Similarity=0.200 Sum_probs=71.6
Q ss_pred cccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCCCCCCCCCcEEEEeCCCCCCccccccccCCCCCccEEe
Q 011033 52 CRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLY 131 (495)
Q Consensus 52 ~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 131 (495)
.+.+.|+..|| .+.+|.. ..+++.|+.|.|+-| .++++.++..|.+|+.|++..|. +.++.+-..-...++|+.|.
T Consensus 19 ~~vkKLNcwg~-~L~DIsi-c~kMp~lEVLsLSvN-kIssL~pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 19 ENVKKLNCWGC-GLDDISI-CEKMPLLEVLSLSVN-KISSLAPLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHhhhhcccCC-CccHHHH-HHhcccceeEEeecc-ccccchhHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHh
Confidence 67888899988 5566643 558889999999997 88888889999999999999977 66666544434448899998
Q ss_pred cccCccccccccc------cCCCCccEEE
Q 011033 132 IEHCRTLTYLAGV------QLPRSLKRLD 154 (495)
Q Consensus 132 l~~~~~l~~~~~~------~~~~~L~~L~ 154 (495)
+..|+-...-+.. ..+|+|++|+
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 8876533222111 3456777665
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.01 E-value=0.014 Score=52.08 Aligned_cols=102 Identities=19% Similarity=0.219 Sum_probs=66.5
Q ss_pred cceeecccccCCc-cccccccCCCCccEEEEeCCCCCCCCCCCCCCCCCcEEEEeCC--CCCCccccccccCCCCCccEE
Q 011033 54 LEYLRLSYCEGLV-KLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKIIEIEGC--DALKSLPEAWMCDTNSSLETL 130 (495)
Q Consensus 54 L~~L~ls~~~~l~-~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~~~L~~L 130 (495)
.+.+.+.+|.... .+......+..|+.|++.++ .++++..+-.+++|++|.++.| .....++.-.... ++|+++
T Consensus 20 v~~l~lD~~~s~~g~~~gl~d~~~~le~ls~~n~-gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~--P~l~~l 96 (260)
T KOG2739|consen 20 VDELFLDNARSGAGKLGGLTDEFVELELLSVINV-GLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKA--PNLKVL 96 (260)
T ss_pred hhhhhcchhhhcCCCcccccccccchhhhhhhcc-ceeecccCCCcchhhhhcccCCcccccccceehhhhC--CceeEE
Confidence 4444444542221 34444557778888888887 6666666778899999999998 4444444443333 899999
Q ss_pred ecccCcccc---ccccccCCCCccEEEeccCC
Q 011033 131 YIEHCRTLT---YLAGVQLPRSLKRLDILSCD 159 (495)
Q Consensus 131 ~l~~~~~l~---~~~~~~~~~~L~~L~l~~~~ 159 (495)
++++| ++. ++.....+.+|..|++..|.
T Consensus 97 ~ls~N-ki~~lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 97 NLSGN-KIKDLSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred eecCC-ccccccccchhhhhcchhhhhcccCC
Confidence 99985 343 34444556667777776663
No 69
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=94.89 E-value=0.0012 Score=52.68 Aligned_cols=101 Identities=19% Similarity=0.220 Sum_probs=58.6
Q ss_pred ccEEEeecCCCch--hhhhhcCCCCCCcEEeeeCCCCCCcccccCC-CCCCccEEEeeCCCCccccCCCCCCCCCCcEEE
Q 011033 223 LKSLFVWYCPKLE--SIAERLDNNTSLETINISGCENLKILPSGLH-NLGQLQEIEIWECENLVSFPEGGLPCAKLSKLR 299 (495)
Q Consensus 223 L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~-~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~ 299 (495)
+..++++.|.... ..+-.+.....|+..++++ +.++.+|..+. .++.++.|++++| .+.++|..+..+|.|+.|+
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~-N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSD-NGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEeccc-chhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcc
Confidence 4445555554331 2222344455566667776 44555654433 4457777777776 6677776666777777777
Q ss_pred ecCccccccccccccCCCCcceeEecc
Q 011033 300 IYGCERLEALPKGLHNLTSLQQLTIGG 326 (495)
Q Consensus 300 l~~~~~~~~~~~~l~~l~~L~~L~l~~ 326 (495)
++.|+ +...|.-+..+.++-.|+.-+
T Consensus 107 l~~N~-l~~~p~vi~~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 107 LRFNP-LNAEPRVIAPLIKLDMLDSPE 132 (177)
T ss_pred cccCc-cccchHHHHHHHhHHHhcCCC
Confidence 77765 444455555566666665544
No 70
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.68 E-value=0.17 Score=40.82 Aligned_cols=57 Identities=21% Similarity=0.303 Sum_probs=20.1
Q ss_pred cCCCCCCcEEeeeCCCCCCccc-ccCCCCCCccEEEeeCCCCccccCC-CCCCCCCCcEEEec
Q 011033 241 LDNNTSLETINISGCENLKILP-SGLHNLGQLQEIEIWECENLVSFPE-GGLPCAKLSKLRIY 301 (495)
Q Consensus 241 ~~~~~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~ 301 (495)
|..+++|+.+.+.. .+..+. ..+.++++|+.+.+... +..++. .+..+++++.+.+.
T Consensus 8 F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 8 FYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEET
T ss_pred HhCCCCCCEEEECC--CeeEeChhhccccccccccccccc--ccccceeeeeccccccccccc
Confidence 34444555555442 122232 23444455555555432 333333 33344455555554
No 71
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.52 E-value=0.0061 Score=52.16 Aligned_cols=61 Identities=11% Similarity=0.166 Sum_probs=42.4
Q ss_pred cccceeecccccCCccc--cccccCCCCccEEEEeCCCCCCCCCC--CCCCCCCcEEEEeCCCCC
Q 011033 52 CRLEYLRLSYCEGLVKL--PQSSLSLSSLREIEIYKCSSLVSFPE--VALPSKLKIIEIEGCDAL 112 (495)
Q Consensus 52 ~~L~~L~ls~~~~l~~l--~~~~~~l~~L~~L~l~~~~~l~~l~~--~~~~~~L~~L~l~~~~~~ 112 (495)
+.++.|.+.+|..+.+. ...-+-.++|+.|+|++|+.+++-+- +..+++|+.|.+.+-+.+
T Consensus 125 ~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 125 RSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred chhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhh
Confidence 77777888888666532 22122467888889988888887654 677888888888875533
No 72
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.50 E-value=0.0089 Score=51.17 Aligned_cols=88 Identities=19% Similarity=0.368 Sum_probs=51.9
Q ss_pred ccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccCCCCCCCceeeeccccccccccc-c
Q 011033 339 NLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSS-S 417 (495)
Q Consensus 339 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~ 417 (495)
.++.++-+++......+ ..+.+++.++.|.+.+| ..++..-.+. -+ ...++|+.|+|++|+.+++-.. +
T Consensus 102 ~IeaVDAsds~I~~eGl----e~L~~l~~i~~l~l~~c-k~~dD~~L~~---l~--~~~~~L~~L~lsgC~rIT~~GL~~ 171 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGL----EHLRDLRSIKSLSLANC-KYFDDWCLER---LG--GLAPSLQDLDLSGCPRITDGGLAC 171 (221)
T ss_pred eEEEEecCCchHHHHHH----HHHhccchhhhheeccc-cchhhHHHHH---hc--ccccchheeeccCCCeechhHHHH
Confidence 45666666665333222 24777777777777777 2232221111 00 1446788888888888777553 6
Q ss_pred cccCCCCCeEeccCCCCCC
Q 011033 418 IVDLQNLTHLNLVDCPKLK 436 (495)
Q Consensus 418 ~~~~~~L~~L~l~~c~~l~ 436 (495)
+..+++|+.|.+.+-+.+.
T Consensus 172 L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 172 LLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred HHHhhhhHHHHhcCchhhh
Confidence 6777777777777754433
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.76 E-value=0.031 Score=29.41 Aligned_cols=17 Identities=53% Similarity=0.722 Sum_probs=8.1
Q ss_pred cceeecccccCCcccccc
Q 011033 54 LEYLRLSYCEGLVKLPQS 71 (495)
Q Consensus 54 L~~L~ls~~~~l~~l~~~ 71 (495)
|++|++++| .++.+|..
T Consensus 2 L~~Ldls~n-~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGN-NLTSIPSS 18 (22)
T ss_dssp ESEEEETSS-EESEEGTT
T ss_pred ccEEECCCC-cCEeCChh
Confidence 455555555 33344443
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.08 E-value=0.062 Score=26.21 Aligned_cols=11 Identities=36% Similarity=0.486 Sum_probs=4.2
Q ss_pred CCCeEeccCCC
Q 011033 423 NLTHLNLVDCP 433 (495)
Q Consensus 423 ~L~~L~l~~c~ 433 (495)
+|++|++++|+
T Consensus 2 ~L~~L~l~~n~ 12 (17)
T PF13504_consen 2 NLRTLDLSNNR 12 (17)
T ss_dssp T-SEEEETSS-
T ss_pred ccCEEECCCCC
Confidence 34444444443
No 75
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=92.55 E-value=0.084 Score=27.74 Aligned_cols=20 Identities=25% Similarity=0.506 Sum_probs=11.1
Q ss_pred CCcEEEecCcccccccccccc
Q 011033 294 KLSKLRIYGCERLEALPKGLH 314 (495)
Q Consensus 294 ~L~~L~l~~~~~~~~~~~~l~ 314 (495)
+|+.|++++| .++.+|+.++
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSS-EESEEGTTTT
T ss_pred CccEEECCCC-cCEeCChhhc
Confidence 3566666666 3445655443
No 76
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=90.26 E-value=0.14 Score=50.81 Aligned_cols=69 Identities=19% Similarity=0.212 Sum_probs=40.8
Q ss_pred ccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCC--CCccEEEEeCCCCCCCC
Q 011033 17 DICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSL--SSLREIEIYKCSSLVSF 92 (495)
Q Consensus 17 ~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l--~~L~~L~l~~~~~l~~l 92 (495)
+++.+..+++++ +++.++.. +..+++..|+|..|+|++|........++.++ ..|++|.+.+|+..+++
T Consensus 216 n~p~i~sl~lsn-NrL~~Ld~------~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 216 NFPEILSLSLSN-NRLYHLDA------LSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTF 286 (585)
T ss_pred CCcceeeeeccc-chhhchhh------hhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccch
Confidence 566777777777 56666533 66677777777777777762222211123322 34667777776555544
No 77
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=87.85 E-value=0.37 Score=26.46 Aligned_cols=15 Identities=33% Similarity=0.720 Sum_probs=7.2
Q ss_pred CCCCeEeccCCCCCC
Q 011033 422 QNLTHLNLVDCPKLK 436 (495)
Q Consensus 422 ~~L~~L~l~~c~~l~ 436 (495)
++|++|++++|++++
T Consensus 2 ~~L~~L~l~~C~~it 16 (26)
T smart00367 2 PNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCEeCCCCCCCcC
Confidence 445555555554443
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=77.49 E-value=1.8 Score=23.58 Aligned_cols=20 Identities=35% Similarity=0.567 Sum_probs=12.7
Q ss_pred CCCCCeEeccCCCCCCCCCCC
Q 011033 421 LQNLTHLNLVDCPKLKYFPEK 441 (495)
Q Consensus 421 ~~~L~~L~l~~c~~l~~l~~~ 441 (495)
+++|+.|++++ +.++.+|..
T Consensus 1 L~~L~~L~L~~-N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSN-NQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCC-CcCCcCCHH
Confidence 35677777777 357776653
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=77.49 E-value=1.8 Score=23.58 Aligned_cols=20 Identities=35% Similarity=0.567 Sum_probs=12.7
Q ss_pred CCCCCeEeccCCCCCCCCCCC
Q 011033 421 LQNLTHLNLVDCPKLKYFPEK 441 (495)
Q Consensus 421 ~~~L~~L~l~~c~~l~~l~~~ 441 (495)
+++|+.|++++ +.++.+|..
T Consensus 1 L~~L~~L~L~~-N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSN-NQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCC-CcCCcCCHH
Confidence 35677777777 357776653
No 80
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=64.55 E-value=4.3 Score=22.29 Aligned_cols=17 Identities=35% Similarity=0.632 Sum_probs=8.1
Q ss_pred CCCeEeccCCCCCCCCCC
Q 011033 423 NLTHLNLVDCPKLKYFPE 440 (495)
Q Consensus 423 ~L~~L~l~~c~~l~~l~~ 440 (495)
+|+.|++++ ++++++|+
T Consensus 3 ~L~~L~vs~-N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSN-NQLTSLPE 19 (26)
T ss_pred ccceeecCC-CccccCcc
Confidence 445555555 33555444
No 81
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=53.62 E-value=8.3 Score=20.35 Aligned_cols=12 Identities=17% Similarity=0.174 Sum_probs=5.5
Q ss_pred cccceeeccCCc
Q 011033 445 SSLLQLSIYRCP 456 (495)
Q Consensus 445 ~~L~~L~l~~c~ 456 (495)
++|++|++++|.
T Consensus 2 ~~L~~L~l~~n~ 13 (24)
T PF13516_consen 2 PNLETLDLSNNQ 13 (24)
T ss_dssp TT-SEEE-TSSB
T ss_pred CCCCEEEccCCc
Confidence 345555555554
No 82
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=50.62 E-value=8.8 Score=38.62 Aligned_cols=43 Identities=21% Similarity=0.093 Sum_probs=19.0
Q ss_pred CCCCcEEEEeCCCCCCccccccccCCCCCccEEecccCccccc
Q 011033 98 PSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTY 140 (495)
Q Consensus 98 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 140 (495)
.++|..|+|++|.+......++...+...|++|-+.+++..+.
T Consensus 243 apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 243 APKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred cchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccc
Confidence 4455555555552222222222223334466666666544333
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=49.93 E-value=1.1 Score=39.70 Aligned_cols=84 Identities=19% Similarity=0.124 Sum_probs=45.4
Q ss_pred ccccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCC
Q 011033 15 LQDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE 94 (495)
Q Consensus 15 ~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~ 94 (495)
+-.|...+.||++. +.+-.+-. .|+-+ ..|..|+++.+ .+.-+|..++....++.+++..| ..+..|.
T Consensus 38 i~~~kr~tvld~~s-~r~vn~~~-----n~s~~----t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~ 105 (326)
T KOG0473|consen 38 IASFKRVTVLDLSS-NRLVNLGK-----NFSIL----TRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKN-NHSQQPK 105 (326)
T ss_pred hhccceeeeehhhh-hHHHhhcc-----chHHH----HHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhcc-chhhCCc
Confidence 34455566666665 33332222 24444 55666666654 44555555666666666666554 4444443
Q ss_pred -CCCCCCCcEEEEeCCC
Q 011033 95 -VALPSKLKIIEIEGCD 110 (495)
Q Consensus 95 -~~~~~~L~~L~l~~~~ 110 (495)
.+..+.+++++...++
T Consensus 106 s~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 106 SQKKEPHPKKNEQKKTE 122 (326)
T ss_pred cccccCCcchhhhccCc
Confidence 5556666666666554
No 84
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=47.88 E-value=2 Score=38.16 Aligned_cols=69 Identities=13% Similarity=0.059 Sum_probs=57.4
Q ss_pred CccccccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCC
Q 011033 12 NELLQDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVS 91 (495)
Q Consensus 12 ~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~ 91 (495)
...++....|..|+++. +.+..+|.+ +++. ..++.+++.+| ..+..|.+++..++++++++.+++....
T Consensus 58 ~~n~s~~t~~~rl~~sk-nq~~~~~~d-----~~q~----~e~~~~~~~~n-~~~~~p~s~~k~~~~k~~e~k~~~~~~~ 126 (326)
T KOG0473|consen 58 GKNFSILTRLVRLDLSK-NQIKFLPKD-----AKQQ----RETVNAASHKN-NHSQQPKSQKKEPHPKKNEQKKTEFFRK 126 (326)
T ss_pred ccchHHHHHHHHHhccH-hhHhhChhh-----HHHH----HHHHHHHhhcc-chhhCCccccccCCcchhhhccCcchHH
Confidence 44466777888999998 788888876 8888 99999999987 6689999999999999999999864443
No 85
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=43.11 E-value=39 Score=21.12 Aligned_cols=29 Identities=34% Similarity=0.456 Sum_probs=12.6
Q ss_pred CcceeEecc-ccccccCCCCCCccceeEee
Q 011033 318 SLQQLTIGG-ELPSLEEDGLPTNLHSLHIW 346 (495)
Q Consensus 318 ~L~~L~l~~-~l~~~~~~~~~~~L~~L~l~ 346 (495)
++++|.+.. .-..+.....|++|++|.+.
T Consensus 13 ~l~~L~~g~~fn~~i~~~~lP~sl~~L~fg 42 (44)
T PF05725_consen 13 SLKSLIFGSSFNQPIEPGSLPNSLKSLSFG 42 (44)
T ss_pred CCeEEEECCccCccCCCCccCCCceEEEee
Confidence 344444433 22233334445555555543
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=40.36 E-value=22 Score=19.49 Aligned_cols=11 Identities=45% Similarity=0.338 Sum_probs=5.9
Q ss_pred cccceeecccc
Q 011033 52 CRLEYLRLSYC 62 (495)
Q Consensus 52 ~~L~~L~ls~~ 62 (495)
.+|+.|++++|
T Consensus 2 ~~L~~L~L~~N 12 (26)
T smart00365 2 TNLEELDLSQN 12 (26)
T ss_pred CccCEEECCCC
Confidence 44555555554
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=33.21 E-value=29 Score=19.24 Aligned_cols=11 Identities=36% Similarity=0.156 Sum_probs=7.4
Q ss_pred cccceeecccc
Q 011033 52 CRLEYLRLSYC 62 (495)
Q Consensus 52 ~~L~~L~ls~~ 62 (495)
++|++|+|++|
T Consensus 2 ~~L~~LdL~~N 12 (28)
T smart00368 2 PSLRELDLSNN 12 (28)
T ss_pred CccCEEECCCC
Confidence 45677777766
Done!