Query 011033
Match_columns 495
No_of_seqs 201 out of 2374
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 19:24:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011033.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011033hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.5E-32 5.1E-37 293.1 25.1 255 221-482 394-716 (768)
2 3t6q_A CD180 antigen; protein- 100.0 2.9E-31 9.9E-36 276.6 31.8 134 12-158 50-189 (606)
3 3vq2_A TLR4, TOLL-like recepto 100.0 1E-30 3.4E-35 272.5 30.3 412 11-457 48-557 (606)
4 3rgz_A Protein brassinosteroid 100.0 2.4E-31 8.2E-36 283.8 24.5 228 221-458 418-717 (768)
5 3t6q_A CD180 antigen; protein- 100.0 1.4E-30 4.9E-35 271.3 29.6 383 10-432 72-510 (606)
6 4eco_A Uncharacterized protein 100.0 7.3E-31 2.5E-35 273.8 26.3 342 67-458 197-600 (636)
7 1ziw_A TOLL-like receptor 3; i 100.0 4.2E-29 1.4E-33 263.8 36.4 134 11-158 41-181 (680)
8 4ecn_A Leucine-rich repeat pro 100.0 5E-30 1.7E-34 272.4 28.6 341 68-458 440-840 (876)
9 3j0a_A TOLL-like receptor 5; m 100.0 1.2E-29 4E-34 273.5 29.2 246 221-481 266-558 (844)
10 3vq2_A TLR4, TOLL-like recepto 100.0 3.8E-29 1.3E-33 260.6 31.8 398 19-456 32-532 (606)
11 4eco_A Uncharacterized protein 100.0 3.2E-30 1.1E-34 269.0 22.9 365 43-459 201-633 (636)
12 2z7x_B TOLL-like receptor 1, v 100.0 2.9E-29 9.8E-34 256.6 28.9 398 19-457 21-480 (520)
13 2z63_A TOLL-like receptor 4, v 100.0 3E-29 1E-33 259.5 28.0 396 13-456 46-529 (570)
14 1ziw_A TOLL-like receptor 3; i 100.0 4.1E-28 1.4E-32 256.2 34.8 281 19-326 25-362 (680)
15 2z81_A CD282 antigen, TOLL-lik 100.0 8.8E-30 3E-34 262.3 20.9 128 19-158 26-158 (549)
16 4ecn_A Leucine-rich repeat pro 100.0 1.2E-28 4E-33 261.8 24.1 346 43-440 443-844 (876)
17 2z63_A TOLL-like receptor 4, v 100.0 2.1E-28 7E-33 253.2 25.0 386 10-433 67-529 (570)
18 3j0a_A TOLL-like receptor 5; m 100.0 8E-28 2.8E-32 259.2 30.4 410 9-457 38-559 (844)
19 1o6v_A Internalin A; bacterial 100.0 2.1E-27 7.1E-32 239.1 27.5 348 17-440 44-392 (466)
20 2z81_A CD282 antigen, TOLL-lik 100.0 9.5E-28 3.2E-32 247.1 25.3 410 11-457 42-509 (549)
21 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2E-27 6.9E-32 245.0 25.8 402 19-457 52-509 (562)
22 1jl5_A Outer protein YOPM; leu 100.0 1.2E-26 4.2E-31 231.6 26.1 345 17-455 9-367 (454)
23 1o6v_A Internalin A; bacterial 99.9 2.5E-26 8.7E-31 231.2 26.3 329 14-416 63-392 (466)
24 4fmz_A Internalin; leucine ric 99.9 1.9E-26 6.5E-31 223.1 24.3 300 52-433 44-344 (347)
25 2z7x_B TOLL-like receptor 1, v 99.9 2.5E-27 8.5E-32 242.2 17.9 377 12-433 38-479 (520)
26 4fmz_A Internalin; leucine ric 99.9 1.3E-25 4.4E-30 217.3 25.7 305 72-457 40-345 (347)
27 3bz5_A Internalin-J, INLJ; leu 99.9 2E-25 7E-30 223.0 27.6 224 15-324 38-261 (457)
28 4g8a_A TOLL-like receptor 4; l 99.9 2.5E-25 8.4E-30 233.1 29.3 220 221-456 349-578 (635)
29 3v47_A TOLL-like receptor 5B a 99.9 1.4E-25 4.8E-30 225.3 26.1 362 19-433 30-406 (455)
30 3v47_A TOLL-like receptor 5B a 99.9 1.9E-25 6.5E-30 224.4 25.0 367 21-456 12-406 (455)
31 1jl5_A Outer protein YOPM; leu 99.9 7.7E-25 2.6E-29 218.6 25.8 354 12-457 27-408 (454)
32 3bz5_A Internalin-J, INLJ; leu 99.9 4.4E-24 1.5E-28 213.3 28.2 306 44-439 38-355 (457)
33 3o6n_A APL1; leucine-rich repe 99.9 1.9E-24 6.6E-29 212.4 24.5 299 17-376 43-349 (390)
34 2id5_A Lingo-1, leucine rich r 99.9 9.8E-24 3.3E-28 213.1 28.1 309 21-409 13-331 (477)
35 3o6n_A APL1; leucine-rich repe 99.9 7.1E-24 2.4E-28 208.4 25.9 300 52-412 45-352 (390)
36 3oja_B Anopheles plasmodium-re 99.9 4.3E-24 1.5E-28 221.4 23.2 300 17-376 49-355 (597)
37 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.8E-23 6.2E-28 215.5 27.3 406 17-482 29-509 (562)
38 2id5_A Lingo-1, leucine rich r 99.9 7.6E-24 2.6E-28 213.9 23.4 293 18-350 31-332 (477)
39 4g8a_A TOLL-like receptor 4; l 99.9 2.9E-23 9.9E-28 217.3 28.5 426 20-482 53-579 (635)
40 3oja_B Anopheles plasmodium-re 99.9 3.8E-23 1.3E-27 214.3 25.3 276 52-376 51-334 (597)
41 1xku_A Decorin; proteoglycan, 99.9 3.4E-21 1.2E-25 184.8 25.8 182 240-432 140-329 (330)
42 1xku_A Decorin; proteoglycan, 99.9 4.7E-21 1.6E-25 183.8 26.1 283 19-376 31-329 (330)
43 2ft3_A Biglycan; proteoglycan, 99.9 2.5E-21 8.6E-26 185.8 23.0 282 19-376 33-330 (332)
44 4fcg_A Uncharacterized protein 99.9 1.8E-21 6E-26 186.1 20.3 219 52-326 81-310 (328)
45 2p1m_B Transport inhibitor res 99.9 2.4E-24 8.3E-29 223.8 -1.7 408 14-457 61-518 (594)
46 3ogk_B Coronatine-insensitive 99.9 2.9E-24 9.9E-29 223.1 -1.6 403 14-456 68-524 (592)
47 2ft3_A Biglycan; proteoglycan, 99.9 8E-21 2.7E-25 182.3 22.4 182 241-433 143-331 (332)
48 4fcg_A Uncharacterized protein 99.9 2E-21 6.9E-26 185.7 17.0 223 18-303 80-311 (328)
49 1ogq_A PGIP-2, polygalacturona 99.9 1.5E-21 5.2E-26 185.4 14.2 248 52-352 50-305 (313)
50 3ogk_B Coronatine-insensitive 99.9 1.8E-22 6.3E-27 209.5 7.3 391 17-455 110-548 (592)
51 1z7x_W Ribonuclease inhibitor; 99.8 4E-23 1.4E-27 207.8 -1.7 373 19-456 3-438 (461)
52 1ogq_A PGIP-2, polygalacturona 99.8 1.3E-20 4.3E-25 179.1 13.5 243 19-326 50-300 (313)
53 3g06_A SSPH2 (leucine-rich rep 99.8 2.8E-18 9.5E-23 176.5 26.9 253 53-376 41-294 (622)
54 2z80_A TOLL-like receptor 2, v 99.8 3.3E-19 1.1E-23 172.5 18.0 266 16-349 28-312 (353)
55 3zyi_A Leucine-rich repeat-con 99.8 9.3E-19 3.2E-23 175.2 20.7 241 20-304 55-301 (452)
56 2p1m_B Transport inhibitor res 99.8 3.1E-21 1E-25 200.4 2.1 370 15-434 101-518 (594)
57 3g06_A SSPH2 (leucine-rich rep 99.8 4.8E-18 1.7E-22 174.8 25.7 255 19-350 40-296 (622)
58 2z80_A TOLL-like receptor 2, v 99.8 6.6E-19 2.3E-23 170.4 18.2 105 221-326 100-207 (353)
59 3zyj_A Leucine-rich repeat-con 99.8 1.3E-18 4.4E-23 173.6 20.1 240 20-304 44-290 (440)
60 3zyj_A Leucine-rich repeat-con 99.8 3.3E-18 1.1E-22 170.6 23.0 198 221-433 88-290 (440)
61 3o53_A Protein LRIM1, AGAP0063 99.8 7.4E-20 2.5E-24 174.2 9.7 239 50-326 32-271 (317)
62 3zyi_A Leucine-rich repeat-con 99.8 4.8E-18 1.6E-22 170.1 22.7 198 221-433 99-301 (452)
63 3o53_A Protein LRIM1, AGAP0063 99.8 5.3E-20 1.8E-24 175.2 7.8 258 52-376 10-272 (317)
64 2z66_A Variable lymphocyte rec 99.8 1.4E-18 4.9E-23 164.6 17.3 224 218-457 25-260 (306)
65 3oja_A Leucine-rich immune mol 99.8 3.9E-19 1.3E-23 179.1 12.0 107 41-157 23-129 (487)
66 1ozn_A Reticulon 4 receptor; N 99.8 8.4E-18 2.9E-22 157.5 19.4 201 219-433 30-236 (285)
67 1z7x_W Ribonuclease inhibitor; 99.8 1.4E-21 4.6E-26 196.6 -7.1 288 14-326 23-350 (461)
68 2z66_A Variable lymphocyte rec 99.8 1E-17 3.5E-22 158.7 19.7 128 221-349 126-259 (306)
69 2xwt_C Thyrotropin receptor; s 99.8 1.1E-17 3.7E-22 152.5 17.0 180 264-457 50-238 (239)
70 1ozn_A Reticulon 4 receptor; N 99.8 9.7E-18 3.3E-22 157.1 15.8 98 22-135 14-115 (285)
71 1wwl_A Monocyte differentiatio 99.7 8.9E-18 3.1E-22 159.4 12.8 249 13-326 37-305 (312)
72 3oja_A Leucine-rich immune mol 99.7 2.4E-17 8.1E-22 166.1 13.9 213 221-458 34-250 (487)
73 1wwl_A Monocyte differentiatio 99.7 6.7E-18 2.3E-22 160.3 8.5 200 243-456 93-307 (312)
74 2z62_A TOLL-like receptor 4, v 99.7 1.6E-16 5.4E-21 148.1 15.1 200 218-433 25-235 (276)
75 1p9a_G Platelet glycoprotein I 99.7 8.5E-16 2.9E-20 143.9 19.0 172 219-407 29-204 (290)
76 2xwt_C Thyrotropin receptor; s 99.7 4.6E-16 1.6E-20 141.6 16.2 199 219-434 29-238 (239)
77 1p9a_G Platelet glycoprotein I 99.7 9.8E-16 3.3E-20 143.5 18.0 128 13-157 4-133 (290)
78 2o6q_A Variable lymphocyte rec 99.7 1.8E-15 6.2E-20 140.3 19.6 194 221-433 16-216 (270)
79 2z62_A TOLL-like receptor 4, v 99.7 4.4E-16 1.5E-20 145.1 15.3 205 235-456 20-235 (276)
80 1h6u_A Internalin H; cell adhe 99.7 3.8E-16 1.3E-20 147.7 15.0 192 44-304 37-228 (308)
81 3rfs_A Internalin B, repeat mo 99.7 2.3E-16 7.7E-21 146.6 12.9 224 18-315 18-244 (272)
82 2o6q_A Variable lymphocyte rec 99.7 3.2E-15 1.1E-19 138.7 20.0 195 186-409 17-216 (270)
83 1h6u_A Internalin H; cell adhe 99.7 5.6E-16 1.9E-20 146.6 14.7 193 221-440 41-234 (308)
84 4glp_A Monocyte differentiatio 99.7 3.5E-16 1.2E-20 148.3 13.2 225 222-457 65-306 (310)
85 4ay9_X Follicle-stimulating ho 99.7 4.8E-15 1.6E-19 142.9 20.0 222 218-455 27-256 (350)
86 4glp_A Monocyte differentiatio 99.7 5.2E-16 1.8E-20 147.1 12.4 198 221-433 91-305 (310)
87 4ay9_X Follicle-stimulating ho 99.7 4.1E-15 1.4E-19 143.4 18.7 195 221-431 54-255 (350)
88 2ast_B S-phase kinase-associat 99.6 6.7E-17 2.3E-21 155.2 3.6 218 223-455 49-282 (336)
89 3rfs_A Internalin B, repeat mo 99.6 2E-14 6.8E-19 133.4 15.2 147 221-376 63-215 (272)
90 2ast_B S-phase kinase-associat 99.5 1.9E-15 6.4E-20 145.1 5.0 106 221-326 93-204 (336)
91 1h6t_A Internalin B; cell adhe 99.5 2.1E-14 7.2E-19 134.5 11.6 174 242-440 43-217 (291)
92 3m19_A Variable lymphocyte rec 99.5 1.3E-13 4.3E-18 126.4 16.2 63 362-433 127-190 (251)
93 3m19_A Variable lymphocyte rec 99.5 1.9E-13 6.4E-18 125.2 16.4 152 219-376 33-189 (251)
94 3cvr_A Invasion plasmid antige 99.5 6.7E-14 2.3E-18 142.3 14.5 186 53-315 60-252 (571)
95 2ca6_A RAN GTPase-activating p 99.5 1.8E-15 6E-20 148.2 2.5 87 43-136 27-133 (386)
96 2ca6_A RAN GTPase-activating p 99.5 9.4E-16 3.2E-20 150.1 0.4 95 11-111 24-134 (386)
97 1h6t_A Internalin B; cell adhe 99.5 7.9E-14 2.7E-18 130.6 13.1 98 52-157 46-143 (291)
98 1m9s_A Internalin B; cell inva 99.5 1.6E-13 5.4E-18 141.0 12.1 122 18-158 20-141 (605)
99 4ezg_A Putative uncharacterize 99.5 5E-13 1.7E-17 117.5 13.0 150 266-456 41-192 (197)
100 3goz_A Leucine-rich repeat-con 99.5 2.1E-14 7.3E-19 139.1 4.3 226 219-456 20-295 (362)
101 3cvr_A Invasion plasmid antige 99.5 1E-12 3.5E-17 133.6 16.6 181 222-433 60-241 (571)
102 1m9s_A Internalin B; cell inva 99.4 4.7E-13 1.6E-17 137.5 12.9 175 241-440 39-214 (605)
103 3goz_A Leucine-rich repeat-con 99.4 2.1E-14 7.2E-19 139.1 1.6 242 184-438 21-299 (362)
104 4ezg_A Putative uncharacterize 99.4 9.8E-13 3.3E-17 115.6 11.5 146 221-376 44-191 (197)
105 1xeu_A Internalin C; cellular 99.4 9.8E-13 3.4E-17 121.1 11.1 99 17-134 17-115 (263)
106 1xeu_A Internalin C; cellular 99.4 2.8E-13 9.6E-18 124.8 6.5 102 241-349 37-139 (263)
107 3e6j_A Variable lymphocyte rec 99.4 1.2E-11 4E-16 111.5 15.0 61 362-432 108-169 (229)
108 2o6s_A Variable lymphocyte rec 99.3 1.1E-11 3.6E-16 110.0 14.0 104 220-326 27-133 (208)
109 2o6s_A Variable lymphocyte rec 99.3 7.6E-12 2.6E-16 110.9 13.0 158 244-423 27-190 (208)
110 2v9t_B SLIT homolog 2 protein 99.3 1.4E-11 4.9E-16 110.0 14.3 130 219-349 30-163 (220)
111 2xot_A Amphoterin-induced prot 99.3 8.1E-12 2.8E-16 120.8 13.1 152 224-384 21-179 (361)
112 3e6j_A Variable lymphocyte rec 99.3 3.6E-11 1.2E-15 108.2 14.7 129 218-349 37-170 (229)
113 2v9t_B SLIT homolog 2 protein 99.3 4.3E-11 1.5E-15 107.0 14.9 119 250-376 16-138 (220)
114 2xot_A Amphoterin-induced prot 99.3 1.4E-11 4.7E-16 119.1 12.1 153 218-376 36-199 (361)
115 3sb4_A Hypothetical leucine ri 99.3 3.8E-11 1.3E-15 114.5 13.6 119 221-344 202-327 (329)
116 2v70_A SLIT-2, SLIT homolog 2 99.2 6.7E-11 2.3E-15 105.7 13.1 146 248-433 14-164 (220)
117 2ell_A Acidic leucine-rich nuc 99.2 2.9E-11 1E-15 103.1 9.5 129 245-376 24-157 (168)
118 2v70_A SLIT-2, SLIT homolog 2 99.2 1.1E-10 3.6E-15 104.4 12.9 128 220-349 31-164 (220)
119 2ell_A Acidic leucine-rich nuc 99.2 4.9E-11 1.7E-15 101.8 10.1 135 269-440 24-164 (168)
120 3sb4_A Hypothetical leucine ri 99.2 9.9E-11 3.4E-15 111.6 13.1 79 365-455 225-307 (329)
121 1a9n_A U2A', U2A'; complex (nu 99.2 5.1E-11 1.7E-15 102.5 9.2 136 7-159 7-151 (176)
122 2je0_A Acidic leucine-rich nuc 99.1 8.3E-11 2.8E-15 98.1 8.3 58 363-430 85-148 (149)
123 1dce_A Protein (RAB geranylger 99.1 2.1E-13 7.2E-18 139.2 -9.7 105 319-440 443-550 (567)
124 4fdw_A Leucine rich hypothetic 99.1 6.6E-09 2.2E-13 101.3 22.4 257 15-349 109-381 (401)
125 2je0_A Acidic leucine-rich nuc 99.1 6.8E-11 2.3E-15 98.6 6.2 80 245-326 17-97 (149)
126 4fs7_A Uncharacterized protein 99.1 8.5E-09 2.9E-13 100.8 21.5 53 52-108 71-126 (394)
127 2wfh_A SLIT homolog 2 protein 99.0 1.7E-09 5.7E-14 94.3 11.7 119 22-158 13-136 (193)
128 1a9n_A U2A', U2A'; complex (nu 99.0 3.7E-10 1.3E-14 97.1 7.1 56 399-456 89-151 (176)
129 4fs7_A Uncharacterized protein 99.0 6.3E-08 2.2E-12 94.5 22.9 190 240-455 180-376 (394)
130 4b8c_D Glucose-repressible alc 99.0 1E-10 3.5E-15 123.2 3.0 109 238-349 217-327 (727)
131 1dce_A Protein (RAB geranylger 99.0 1.4E-09 4.9E-14 110.9 11.1 140 13-164 403-548 (567)
132 4fdw_A Leucine rich hypothetic 99.0 6.7E-08 2.3E-12 94.2 22.3 211 222-455 158-380 (401)
133 1w8a_A SLIT protein; signaling 99.0 2.6E-09 8.9E-14 93.1 10.9 98 224-326 11-111 (192)
134 1w8a_A SLIT protein; signaling 99.0 3.6E-09 1.2E-13 92.2 11.8 107 219-326 27-135 (192)
135 2wfh_A SLIT homolog 2 protein 99.0 3.5E-09 1.2E-13 92.3 10.9 104 18-136 30-137 (193)
136 4b8c_D Glucose-repressible alc 98.9 1.7E-09 5.8E-14 113.9 8.0 110 12-136 217-327 (727)
137 4gt6_A Cell surface protein; l 98.9 1.5E-07 5.2E-12 91.8 21.3 132 9-157 53-191 (394)
138 1ds9_A Outer arm dynein; leuci 98.9 1.2E-11 4.2E-16 108.7 -7.8 63 261-326 40-102 (198)
139 2o6r_A Variable lymphocyte rec 98.9 2.1E-08 7.3E-13 86.0 12.7 103 221-326 28-133 (177)
140 2o6r_A Variable lymphocyte rec 98.9 9.2E-09 3.1E-13 88.3 10.3 122 20-159 8-135 (177)
141 1ds9_A Outer arm dynein; leuci 98.8 6.9E-11 2.4E-15 103.8 -5.1 122 20-158 24-150 (198)
142 4gt6_A Cell surface protein; l 98.8 3.5E-07 1.2E-11 89.2 19.5 111 32-157 51-169 (394)
143 2r9u_A Variable lymphocyte rec 98.8 2.4E-08 8.4E-13 85.3 9.6 100 21-136 14-116 (174)
144 3g39_A Variable lymphocyte rec 98.7 3.7E-08 1.3E-12 83.8 9.7 100 20-136 10-113 (170)
145 4h09_A Hypothetical leucine ri 98.7 4.9E-06 1.7E-10 80.6 25.3 74 52-134 46-122 (379)
146 3g39_A Variable lymphocyte rec 98.6 3E-07 1E-11 78.2 10.5 83 220-304 29-113 (170)
147 2r9u_A Variable lymphocyte rec 98.5 5.6E-07 1.9E-11 76.7 10.7 79 245-326 33-114 (174)
148 4h09_A Hypothetical leucine ri 98.5 3.1E-05 1E-09 74.9 24.0 121 15-157 42-167 (379)
149 3e4g_A ATP synthase subunit S, 98.4 2.5E-07 8.6E-12 77.8 5.7 90 338-437 61-154 (176)
150 2ra8_A Uncharacterized protein 98.3 3.6E-07 1.2E-11 87.4 5.6 83 240-325 134-227 (362)
151 2ifg_A High affinity nerve gro 98.3 8.6E-07 2.9E-11 84.8 8.1 99 22-135 11-113 (347)
152 2ifg_A High affinity nerve gro 98.3 8.5E-07 2.9E-11 84.9 7.7 87 15-111 27-115 (347)
153 3un9_A NLR family member X1; l 98.2 5.9E-08 2E-12 93.6 -2.4 105 221-326 72-192 (372)
154 2ra8_A Uncharacterized protein 98.2 1.4E-06 4.8E-11 83.3 6.0 63 237-302 164-228 (362)
155 3un9_A NLR family member X1; l 98.2 5.9E-08 2E-12 93.6 -4.2 171 244-437 71-253 (372)
156 3e4g_A ATP synthase subunit S, 98.2 1.6E-06 5.5E-11 72.9 5.0 85 77-162 62-153 (176)
157 3rw6_A Nuclear RNA export fact 97.7 1E-05 3.5E-10 73.3 2.0 66 49-115 167-236 (267)
158 1io0_A Tropomodulin; LRR prote 97.6 2.2E-05 7.6E-10 67.4 2.9 11 148-158 151-161 (185)
159 3rw6_A Nuclear RNA export fact 97.4 7.8E-05 2.7E-09 67.5 4.0 81 16-105 167-257 (267)
160 1io0_A Tropomodulin; LRR prote 96.7 0.00053 1.8E-08 58.7 2.3 117 12-136 29-162 (185)
161 3rfe_A Platelet glycoprotein I 94.3 0.057 2E-06 42.7 5.2 52 370-433 12-66 (130)
162 3rfe_A Platelet glycoprotein I 93.7 0.11 3.7E-06 41.1 5.6 52 402-457 12-67 (130)
163 1pgv_A TMD-1, tropomodulin TMD 93.6 0.046 1.6E-06 46.6 3.6 66 44-110 33-109 (197)
164 1pgv_A TMD-1, tropomodulin TMD 89.3 0.07 2.4E-06 45.5 -0.0 13 267-279 39-51 (197)
165 2lz0_A Uncharacterized protein 45.3 23 0.0008 25.9 4.0 37 71-109 15-53 (100)
166 2lz0_A Uncharacterized protein 29.8 1.4E+02 0.0047 21.7 6.1 35 241-277 16-51 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.5e-32 Score=293.07 Aligned_cols=255 Identities=18% Similarity=0.163 Sum_probs=175.2
Q ss_pred CCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEe
Q 011033 221 PSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRI 300 (495)
Q Consensus 221 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l 300 (495)
++|+.|++++|...+.+|..+..+++|+.|++++|.....+|..+..+++|+.|++++|.....+|..+..+++|+.|++
T Consensus 394 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 473 (768)
T 3rgz_A 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 473 (768)
T ss_dssp CCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred CCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEe
Confidence 56888888888777777888888888888888887655567777888888888888888555567777777888888888
Q ss_pred cCccccccccccccCCCCcceeEecc-ccc-cccCC-CCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccc
Q 011033 301 YGCERLEALPKGLHNLTSLQQLTIGG-ELP-SLEED-GLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCD 377 (495)
Q Consensus 301 ~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~-~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 377 (495)
++|.....+|..+..+++|++|++++ .+. .+|.. +.+++|++|++++|.. ....+. .+.++++|+.|++++|
T Consensus 474 ~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l-~~~~p~---~l~~l~~L~~L~Ls~N- 548 (768)
T 3rgz_A 474 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF-SGNIPA---ELGDCRSLIWLDLNTN- 548 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC-EEECCG---GGGGCTTCCEEECCSS-
T ss_pred cCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcc-cCcCCH---HHcCCCCCCEEECCCC-
Confidence 88876667788888888888888888 555 34433 5577888888888873 333343 5778888888888887
Q ss_pred cccc-cchhhhcc---------------------------------------------------------------cccc
Q 011033 378 DDMV-SFPLEDKR---------------------------------------------------------------LGTA 393 (495)
Q Consensus 378 ~~~~-~~~~~~~~---------------------------------------------------------------~~~~ 393 (495)
.+. .+|..... ....
T Consensus 549 -~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~ 627 (768)
T 3rgz_A 549 -LFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT 627 (768)
T ss_dssp -EEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCS
T ss_pred -ccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchh
Confidence 322 23321110 0011
Q ss_pred CCCCCCCceeeecccccccccccccccCCCCCeEeccCCCCCCCCCCC-CCccccceeeccCCchhHHhhhcCCCeeeec
Q 011033 394 LPLPASLTSLRIVDFPNLERLSSSIVDLQNLTHLNLVDCPKLKYFPEK-GLPSSLLQLSIYRCPLMEEKCRKDGGLLTHI 472 (495)
Q Consensus 394 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~c~~l~~~~~~~~~~i~~~ 472 (495)
+..+++|+.|+++++.--..+|..+.+++.|+.|++++|+--..+|.. +.+++|++|++++|.....+-...+ .++.+
T Consensus 628 ~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~-~l~~L 706 (768)
T 3rgz_A 628 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS-ALTML 706 (768)
T ss_dssp CSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGG-GCCCC
T ss_pred hhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHh-CCCCC
Confidence 233467888888885544577778888888888888885533356653 3467888888888864433322222 35556
Q ss_pred ceEEeccCcc
Q 011033 473 PSVQIDLNGF 482 (495)
Q Consensus 473 ~~~~i~~~~~ 482 (495)
..+++..|.+
T Consensus 707 ~~L~ls~N~l 716 (768)
T 3rgz_A 707 TEIDLSNNNL 716 (768)
T ss_dssp SEEECCSSEE
T ss_pred CEEECcCCcc
Confidence 6666666544
No 2
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.9e-31 Score=276.61 Aligned_cols=134 Identities=13% Similarity=0.100 Sum_probs=73.4
Q ss_pred CccccccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCC
Q 011033 12 NELLQDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVS 91 (495)
Q Consensus 12 ~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~ 91 (495)
...|.++++|++|++++ +.++.+.++ .|.++ ++|++|++++|......|..++.+++|++|++++| .++.
T Consensus 50 ~~~~~~l~~L~~L~Ls~-n~i~~~~~~----~~~~l----~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~ 119 (606)
T 3t6q_A 50 NTTFSRLINLTFLDLTR-CQIYWIHED----TFQSQ----HRLDTLVLTANPLIFMAETALSGPKALKHLFFIQT-GISS 119 (606)
T ss_dssp TTTSTTCTTCSEEECTT-CCCCEECTT----TTTTC----TTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTS-CCSC
T ss_pred hhHhccCccceEEECCC-CccceeChh----hccCc----cccCeeeCCCCcccccChhhhcccccccEeecccc-Cccc
Confidence 44566666677777766 345555443 35666 66777777666443344555666666777777666 4444
Q ss_pred CC--CCCCCCCCcEEEEeCCCCCCccccccccCCCCCccEEecccCccccccccc--cCCCCcc--EEEeccC
Q 011033 92 FP--EVALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGV--QLPRSLK--RLDILSC 158 (495)
Q Consensus 92 l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~--~L~l~~~ 158 (495)
++ .++.+++|++|++++|.......+.+.. +++|++|++++| .++.++.. ..+++|+ .|+++++
T Consensus 120 l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~l~L~l~~n 189 (606)
T 3t6q_A 120 IDFIPLHNQKTLESLYLGSNHISSIKLPKGFP--TEKLKVLDFQNN-AIHYLSKEDMSSLQQATNLSLNLNGN 189 (606)
T ss_dssp GGGSCCTTCTTCCEEECCSSCCCCCCCCTTCC--CTTCCEEECCSS-CCCEECHHHHHTTTTCCSEEEECTTC
T ss_pred CCcchhccCCcccEEECCCCcccccCcccccC--CcccCEEEcccC-cccccChhhhhhhcccceeEEecCCC
Confidence 32 2666666777777666532211122222 366666666664 33333221 3455555 5555553
No 3
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.98 E-value=1e-30 Score=272.54 Aligned_cols=412 Identities=15% Similarity=0.064 Sum_probs=247.1
Q ss_pred cCccccccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCC
Q 011033 11 HNELLQDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLV 90 (495)
Q Consensus 11 ~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~ 90 (495)
....|.++++|++|++++ +.++.++++ .|.++ ++|++|++++|......|..++.+++|++|++++| .+.
T Consensus 48 ~~~~~~~l~~L~~L~Ls~-n~l~~i~~~----~~~~l----~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~ 117 (606)
T 3vq2_A 48 KSYSFSNFSELQWLDLSR-CEIETIEDK----AWHGL----HHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET-KLA 117 (606)
T ss_dssp CTTTTTTCTTCCEEECTT-CCCCEECTT----TTTTC----TTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTS-CCC
T ss_pred ChhhccCCccCcEEeCCC-CcccccCHH----Hhhch----hhcCEeECCCCcccccChhhcCCcccCCEEEccCC-ccc
Confidence 345678888999999998 467777664 57777 89999999988543444777889999999999888 566
Q ss_pred CCCC--CCCCCCCcEEEEeCCCCCC-ccccccccCCCCCccEEecccCccccccccc-----------------------
Q 011033 91 SFPE--VALPSKLKIIEIEGCDALK-SLPEAWMCDTNSSLETLYIEHCRTLTYLAGV----------------------- 144 (495)
Q Consensus 91 ~l~~--~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~----------------------- 144 (495)
.++. ++.+++|++|++++|.... .+|..+..+ ++|++|++++|. ++.++..
T Consensus 118 ~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l--~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~ 194 (606)
T 3vq2_A 118 SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNL--TNLVHVDLSYNY-IQTITVNDLQFLRENPQVNLSLDMSLNPID 194 (606)
T ss_dssp CSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTC--TTCCEEECCSSC-CCEECTTTTHHHHHCTTCCCEEECTTCCCC
T ss_pred cccccccCCCCCCCEEeCCCCcccceechHhHhhc--CCCCEEEccCCc-ceecChhhhhhhhccccccceeeccCCCcc
Confidence 5552 8888899999999887443 467777666 888888888853 3332211
Q ss_pred ------cCCCCccEEEeccCCCc--------------ccccc--------------cccccc-------------CCC--
Q 011033 145 ------QLPRSLKRLDILSCDNI--------------RTLTV--------------EEGIQS-------------SSS-- 175 (495)
Q Consensus 145 ------~~~~~L~~L~l~~~~~l--------------~~~~~--------------~~~~~~-------------~~~-- 175 (495)
....+|+.|+++++... +...+ +..... ...
T Consensus 195 ~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~ 274 (606)
T 3vq2_A 195 FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDF 274 (606)
T ss_dssp EECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTC
T ss_pred eeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccc
Confidence 11124566666554210 00000 000000 000
Q ss_pred -CccCcccCccccceeeecCCCCCccc-------------ccCCCCcccccccccCCCCCCccEEEeecCCCchhhhhhc
Q 011033 176 -SSSNRRYTSSLLEKLEIRDCPSLTCI-------------FSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERL 241 (495)
Q Consensus 176 -~~~~~~~~~~~L~~L~l~~~~~l~~~-------------~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 241 (495)
.........++++.+++.++ .++.+ +..+.+ ..+ +.. -.++|+.|++++|...... .+
T Consensus 275 ~~~~~~~~~l~~L~~L~l~~~-~~~~l~~l~~~~~L~~L~l~~n~l-~~l---p~~-~l~~L~~L~l~~n~~~~~~--~~ 346 (606)
T 3vq2_A 275 SDDIVKFHCLANVSAMSLAGV-SIKYLEDVPKHFKWQSLSIIRCQL-KQF---PTL-DLPFLKSLTLTMNKGSISF--KK 346 (606)
T ss_dssp CGGGGSCGGGTTCSEEEEESC-CCCCCCCCCTTCCCSEEEEESCCC-SSC---CCC-CCSSCCEEEEESCSSCEEC--CC
T ss_pred cccccccccCCCCCEEEecCc-cchhhhhccccccCCEEEcccccC-ccc---ccC-CCCccceeeccCCcCccch--hh
Confidence 00000122445666666553 22222 001111 111 101 2245556666555443333 34
Q ss_pred CCCCCCcEEeeeCCCCCCc--ccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCcccccccc-ccccCCCC
Q 011033 242 DNNTSLETINISGCENLKI--LPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALP-KGLHNLTS 318 (495)
Q Consensus 242 ~~~~~L~~L~l~~~~~~~~--l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~ 318 (495)
..+++|+.|++++|..... ++..+..+++|++|++++| .+..++..+..+++|+.|++++|......| ..+..+++
T Consensus 347 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 425 (606)
T 3vq2_A 347 VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN-GAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEK 425 (606)
T ss_dssp CCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSC-SEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTT
T ss_pred ccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCC-ccccchhhccCCCCCCeeECCCCccCCccChhhhhcccc
Confidence 4566666666666432211 2445566677777777776 456666666677777788877776544444 46677778
Q ss_pred cceeEecc-ccccccC--CCCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccCC
Q 011033 319 LQQLTIGG-ELPSLEE--DGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALP 395 (495)
Q Consensus 319 L~~L~l~~-~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 395 (495)
|++|++++ .+....+ ...+++|++|++++|.......+. .+..+++|+.|++++| .+..++... +.
T Consensus 426 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~~l~~L~~L~Ls~n--~l~~~~~~~------~~ 494 (606)
T 3vq2_A 426 LLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSN---VFANTTNLTFLDLSKC--QLEQISWGV------FD 494 (606)
T ss_dssp CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS---CCTTCTTCCEEECTTS--CCCEECTTT------TT
T ss_pred CCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHH---hhccCCCCCEEECCCC--cCCccChhh------hc
Confidence 88888877 5444322 245677888888887633222333 5777888888888887 555543321 23
Q ss_pred CCCCCceeeecccccccc-cccccccCCCCCeEeccCCCCCCCCCCC-CCc-cccceeeccCCch
Q 011033 396 LPASLTSLRIVDFPNLER-LSSSIVDLQNLTHLNLVDCPKLKYFPEK-GLP-SSLLQLSIYRCPL 457 (495)
Q Consensus 396 ~~~~L~~L~l~~~~~l~~-l~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~-~~L~~L~l~~c~~ 457 (495)
.+++|+.|++++| .++. .|..+..+++|++|++++|+ ++.+|.. ..+ ++|++|++++||.
T Consensus 495 ~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 495 TLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp TCTTCCEEECCSS-CCSCEEGGGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSCCC
T ss_pred ccccCCEEECCCC-cCCCcCHHHccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCCCc
Confidence 5678888888885 4444 46678888888888888854 7777764 113 3688888888763
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.98 E-value=2.4e-31 Score=283.77 Aligned_cols=228 Identities=16% Similarity=0.130 Sum_probs=165.8
Q ss_pred CCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEe
Q 011033 221 PSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRI 300 (495)
Q Consensus 221 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l 300 (495)
++|+.|++++|...+.+|..+..+++|+.|++++|.....+|..+..+++|++|++++|.....+|..+..+++|+.|++
T Consensus 418 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 497 (768)
T 3rgz_A 418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISL 497 (768)
T ss_dssp TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred CCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEc
Confidence 67888888888777777888888888888888887666677777888888888888888554466667777888888888
Q ss_pred cCccccccccccccCCCCcceeEecc-ccc-cccCC-CCCCccceeEeeccCccchhhhc--------------------
Q 011033 301 YGCERLEALPKGLHNLTSLQQLTIGG-ELP-SLEED-GLPTNLHSLHIWGNMEIWKSMIE-------------------- 357 (495)
Q Consensus 301 ~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~-~~~~~-~~~~~L~~L~l~~~~~~~~~~~~-------------------- 357 (495)
++|.....+|.++..+++|++|++++ .+. .+|.. ..+++|++|++++|.... .++.
T Consensus 498 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g-~ip~~~~~~~~~~~~~~~~~~~~~ 576 (768)
T 3rgz_A 498 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG-TIPAAMFKQSGKIAANFIAGKRYV 576 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEES-BCCGGGGTTTTCBCCSTTCSCEEE
T ss_pred cCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCC-cCChHHhcccchhhhhcccccccc
Confidence 88876667788888888888888888 554 34332 556788888888775321 1110
Q ss_pred -----------------------------------------------ccccCCCCCccceEEeeccccccc-cchhhhcc
Q 011033 358 -----------------------------------------------RGRGFHRFSSLRHLTIEGCDDDMV-SFPLEDKR 389 (495)
Q Consensus 358 -----------------------------------------------~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~ 389 (495)
.+..+.++++|+.|++++| .+. .+|...
T Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N--~l~g~ip~~l-- 652 (768)
T 3rgz_A 577 YIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN--MLSGYIPKEI-- 652 (768)
T ss_dssp EEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSS--CCBSCCCGGG--
T ss_pred ccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCC--cccccCCHHH--
Confidence 0013455678889999988 444 455544
Q ss_pred ccccCCCCCCCceeeecccccccccccccccCCCCCeEeccCCCCCCCCCCC-CCccccceeeccCCchh
Q 011033 390 LGTALPLPASLTSLRIVDFPNLERLSSSIVDLQNLTHLNLVDCPKLKYFPEK-GLPSSLLQLSIYRCPLM 458 (495)
Q Consensus 390 ~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~c~~l 458 (495)
..+++|+.|+++++.--..+|..+.++++|++|++++|+--..+|.. ..+++|++|++++|+..
T Consensus 653 -----~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 653 -----GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717 (768)
T ss_dssp -----GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEE
T ss_pred -----hccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccc
Confidence 25678999999995555588888889999999999996533356653 34788999999998643
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.98 E-value=1.4e-30 Score=271.33 Aligned_cols=383 Identities=16% Similarity=0.144 Sum_probs=213.3
Q ss_pred hcCccccccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccc-cccccCCCCccEEEEeCCCC
Q 011033 10 SHNELLQDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKL-PQSSLSLSSLREIEIYKCSS 88 (495)
Q Consensus 10 ~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l-~~~~~~l~~L~~L~l~~~~~ 88 (495)
.....|.++++|++|++++ +.++.+.+. .|+.+ ++|++|++++|. +..+ +..++.+++|++|++++| .
T Consensus 72 ~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~----~~~~l----~~L~~L~L~~n~-i~~l~~~~~~~l~~L~~L~L~~n-~ 140 (606)
T 3t6q_A 72 IHEDTFQSQHRLDTLVLTA-NPLIFMAET----ALSGP----KALKHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSN-H 140 (606)
T ss_dssp ECTTTTTTCTTCCEEECTT-CCCSEECTT----TTSSC----TTCCEEECTTSC-CSCGGGSCCTTCTTCCEEECCSS-C
T ss_pred eChhhccCccccCeeeCCC-CcccccChh----hhccc----ccccEeeccccC-cccCCcchhccCCcccEEECCCC-c
Confidence 3456788999999999999 567777554 58888 999999999985 4554 567899999999999998 5
Q ss_pred CCCC--CCCCCCCCCcEEEEeCCCCCCccccccccCCCCCcc--EEecccCccccccc-cccCCCCccEEEeccCCCccc
Q 011033 89 LVSF--PEVALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLE--TLYIEHCRTLTYLA-GVQLPRSLKRLDILSCDNIRT 163 (495)
Q Consensus 89 l~~l--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~--~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~l~~ 163 (495)
+..+ |.+..+++|++|++++|......+..+... ++|+ .|++++|. ++.++ ......+|+.|++.++..+..
T Consensus 141 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~l~L~l~~n~-l~~~~~~~~~~~~L~~L~l~~~~~~~~ 217 (606)
T 3t6q_A 141 ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSL--QQATNLSLNLNGND-IAGIEPGAFDSAVFQSLNFGGTQNLLV 217 (606)
T ss_dssp CCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTT--TTCCSEEEECTTCC-CCEECTTTTTTCEEEEEECTTCSCHHH
T ss_pred ccccCcccccCCcccCEEEcccCcccccChhhhhhh--cccceeEEecCCCc-cCccChhHhhhccccccccCCchhHHH
Confidence 6654 556669999999999988444445556555 7788 88888864 44433 334445677777776542110
Q ss_pred c-----------------------ccccccccC------------CCC----ccCcccCccccceeeecCCCCCcccccC
Q 011033 164 L-----------------------TVEEGIQSS------------SSS----SSNRRYTSSLLEKLEIRDCPSLTCIFSQ 204 (495)
Q Consensus 164 ~-----------------------~~~~~~~~~------------~~~----~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 204 (495)
. .++...... ... ........++++.|+++++ .++.+
T Consensus 218 ~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~l--- 293 (606)
T 3t6q_A 218 IFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTAT-HLSEL--- 293 (606)
T ss_dssp HHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTS-CCSCC---
T ss_pred HhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCC-ccCCC---
Confidence 0 000000000 000 0000112234555555442 22222
Q ss_pred CCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccc-cCCCCCCccEEEeeCCCCcc
Q 011033 205 NELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPS-GLHNLGQLQEIEIWECENLV 283 (495)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~l~ 283 (495)
|.. ... .++|++|++++|......+..+..+++|+.|++++|.....++. .+..+++|++|++++|. +.
T Consensus 294 ---p~~-----l~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~ 363 (606)
T 3t6q_A 294 ---PSG-----LVG-LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD-IE 363 (606)
T ss_dssp ---CSS-----CCS-CTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSC-CC
T ss_pred ---Chh-----hcc-cccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCc-cc
Confidence 111 111 25666666666655555555566666666666666544434432 35566666666666653 33
Q ss_pred cc---CCCCCCCCCCcEEEecCccccccccccccCCCCcceeEecc-ccccccC---CCCCCccceeEeeccCccchhhh
Q 011033 284 SF---PEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSLEE---DGLPTNLHSLHIWGNMEIWKSMI 356 (495)
Q Consensus 284 ~l---~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~---~~~~~~L~~L~l~~~~~~~~~~~ 356 (495)
.. +..+..+++|+.|++++|......|..+..+++|++|++++ .+..... ...+++|++|++++|.. ....+
T Consensus 364 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~ 442 (606)
T 3t6q_A 364 TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL-DISSE 442 (606)
T ss_dssp EEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCC-BTTCT
T ss_pred cccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCcc-CCcCH
Confidence 22 33455556666666666654444445556666666666665 3333211 23345666666666652 22222
Q ss_pred cccccCCCCCccceEEeecccccccc--chhhhccccccCCCCCCCceeeeccccccccc-ccccccCCCCCeEeccCC
Q 011033 357 ERGRGFHRFSSLRHLTIEGCDDDMVS--FPLEDKRLGTALPLPASLTSLRIVDFPNLERL-SSSIVDLQNLTHLNLVDC 432 (495)
Q Consensus 357 ~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~c 432 (495)
. .+.++++|++|++++| .+.. ++.. ..+..+++|+.|++++| .++.+ |..+..+++|++|++++|
T Consensus 443 ~---~~~~l~~L~~L~L~~n--~l~~~~~~~~-----~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N 510 (606)
T 3t6q_A 443 Q---LFDGLPALQHLNLQGN--HFPKGNIQKT-----NSLQTLGRLEILVLSFC-DLSSIDQHAFTSLKMMNHVDLSHN 510 (606)
T ss_dssp T---TTTTCTTCCEEECTTC--BCGGGEECSS-----CGGGGCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred H---HHhCCCCCCEEECCCC--CCCccccccc-----hhhccCCCccEEECCCC-ccCccChhhhccccCCCEEECCCC
Confidence 2 3555566666666665 2222 1100 00112345555555553 33332 334555555555555553
No 6
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.98 E-value=7.3e-31 Score=273.82 Aligned_cols=342 Identities=18% Similarity=0.195 Sum_probs=266.3
Q ss_pred cccccccCCCCccEEEEeCCCCCCC------------------CCC-CC--CCCCCcEEEEeCCCCCCccccccccCCCC
Q 011033 67 KLPQSSLSLSSLREIEIYKCSSLVS------------------FPE-VA--LPSKLKIIEIEGCDALKSLPEAWMCDTNS 125 (495)
Q Consensus 67 ~l~~~~~~l~~L~~L~l~~~~~l~~------------------l~~-~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 125 (495)
.+|..++++++|++|++++|. ++. +|. ++ .+++|++|++++|...+.+|..+..+ +
T Consensus 197 ~ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l--~ 273 (636)
T 4eco_A 197 FVSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL--P 273 (636)
T ss_dssp EECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTC--S
T ss_pred cCCHHHhcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcC--C
Confidence 478889999999999999984 665 776 77 89999999999999888999888777 8
Q ss_pred CccEEecccCcccc--ccccc-cC------CCCccEEEeccCCCcccccccc--ccccCCCCccCcccCccccceeeecC
Q 011033 126 SLETLYIEHCRTLT--YLAGV-QL------PRSLKRLDILSCDNIRTLTVEE--GIQSSSSSSSNRRYTSSLLEKLEIRD 194 (495)
Q Consensus 126 ~L~~L~l~~~~~l~--~~~~~-~~------~~~L~~L~l~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~L~~L~l~~ 194 (495)
+|++|++++|..++ .+|.. .. +++|+.|+++++ .++.+ |. .+. .+++|+.|++++
T Consensus 274 ~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~i--p~~~~l~-----------~l~~L~~L~L~~ 339 (636)
T 4eco_A 274 EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTF--PVETSLQ-----------KMKKLGMLECLY 339 (636)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSSC--CCHHHHT-----------TCTTCCEEECCS
T ss_pred CCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCcc--Cchhhhc-----------cCCCCCEEeCcC
Confidence 99999999976355 35544 22 389999999996 55555 55 342 256799999988
Q ss_pred CCCCc-ccccCCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCC-CcEEeeeCCCCCCcccccCCCCC--C
Q 011033 195 CPSLT-CIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTS-LETINISGCENLKILPSGLHNLG--Q 270 (495)
Q Consensus 195 ~~~l~-~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~l~~~~~~l~--~ 270 (495)
+ .++ .+ +...-.++|+.|++++|... .+|..+..+++ |+.|++++|. +..+|..+..++ +
T Consensus 340 N-~l~g~i-------------p~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~ 403 (636)
T 4eco_A 340 N-QLEGKL-------------PAFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSV 403 (636)
T ss_dssp C-CCEEEC-------------CCCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSC-CSSCCSCCCTTCSSC
T ss_pred C-cCccch-------------hhhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCc-CcccchhhhhcccCc
Confidence 4 444 33 21111268999999988655 78888999999 9999999965 558888777654 8
Q ss_pred ccEEEeeCCCCccccCCCCC-------CCCCCcEEEecCcccccccccc-ccCCCCcceeEecc-ccccccCCCC--C--
Q 011033 271 LQEIEIWECENLVSFPEGGL-------PCAKLSKLRIYGCERLEALPKG-LHNLTSLQQLTIGG-ELPSLEEDGL--P-- 337 (495)
Q Consensus 271 L~~L~l~~~~~l~~l~~~~~-------~~~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~-~l~~~~~~~~--~-- 337 (495)
|+.|++++|......|..+. .+++|+.|++++|. ++.+|.. +..+++|++|++++ .+..++.... .
T Consensus 404 L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~ 482 (636)
T 4eco_A 404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ-ISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENE 482 (636)
T ss_dssp EEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC-CCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTE
T ss_pred cCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc-cCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccc
Confidence 99999999965555555555 66799999999986 5567664 45689999999999 7777776422 1
Q ss_pred -----CccceeEeeccCccchhhhcccccCC--CCCccceEEeeccccccccchhhhccccccCCCCCCCceeeecc---
Q 011033 338 -----TNLHSLHIWGNMEIWKSMIERGRGFH--RFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVD--- 407 (495)
Q Consensus 338 -----~~L~~L~l~~~~~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~--- 407 (495)
++|++|++++|... .++. .+. .+++|++|++++| .+..+|... ..+++|+.|++++
T Consensus 483 ~~~~l~~L~~L~Ls~N~l~--~lp~---~~~~~~l~~L~~L~Ls~N--~l~~ip~~~-------~~l~~L~~L~Ls~N~~ 548 (636)
T 4eco_A 483 NFKNTYLLTSIDLRFNKLT--KLSD---DFRATTLPYLVGIDLSYN--SFSKFPTQP-------LNSSTLKGFGIRNQRD 548 (636)
T ss_dssp ECTTGGGCCEEECCSSCCC--BCCG---GGSTTTCTTCCEEECCSS--CCSSCCCGG-------GGCSSCCEEECCSCBC
T ss_pred cccccCCccEEECcCCcCC--ccCh---hhhhccCCCcCEEECCCC--CCCCcChhh-------hcCCCCCEEECCCCcc
Confidence 28999999999843 3333 344 8999999999998 777776655 2568999999954
Q ss_pred ---cccccccccccccCCCCCeEeccCCCCCCCCCCCCCccccceeeccCCchh
Q 011033 408 ---FPNLERLSSSIVDLQNLTHLNLVDCPKLKYFPEKGLPSSLLQLSIYRCPLM 458 (495)
Q Consensus 408 ---~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l 458 (495)
+.-.+.+|..+..+++|++|++++|+ ++.+|.. +.++|++|++++|+..
T Consensus 549 ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~ip~~-~~~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 549 AQGNRTLREWPEGITLCPSLTQLQIGSND-IRKVNEK-ITPNISVLDIKDNPNI 600 (636)
T ss_dssp TTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSC-CCTTCCEEECCSCTTC
T ss_pred cccCcccccChHHHhcCCCCCEEECCCCc-CCccCHh-HhCcCCEEECcCCCCc
Confidence 44466788899999999999999965 6889875 4589999999999744
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=4.2e-29 Score=263.82 Aligned_cols=134 Identities=17% Similarity=0.167 Sum_probs=93.1
Q ss_pred cCccccccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccc-cccCCCCccEEEEeCCCCC
Q 011033 11 HNELLQDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQ-SSLSLSSLREIEIYKCSSL 89 (495)
Q Consensus 11 ~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~-~~~~l~~L~~L~l~~~~~l 89 (495)
+...|.++++|++|++++ +.++.++++ .|+++ ++|++|++++| .+..+|. .++.+++|++|++++| .+
T Consensus 41 ~~~~~~~l~~L~~L~Ls~-n~l~~~~~~----~~~~l----~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n-~l 109 (680)
T 1ziw_A 41 PAANFTRYSQLTSLDVGF-NTISKLEPE----LCQKL----PMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSN-SI 109 (680)
T ss_dssp CGGGGGGGTTCSEEECCS-SCCCCCCTT----HHHHC----TTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CC
T ss_pred CHHHHhCCCcCcEEECCC-CccCccCHH----HHhcc----cCcCEEECCCC-ccCccChhhhccCCCCCEEECCCC-cc
Confidence 345577888888888888 467776654 57777 88888888887 4566665 5788888888888887 56
Q ss_pred CCCCC--CCCCCCCcEEEEeCCCCCCccccccccCCCCCccEEecccCccccccccc----cCCCCccEEEeccC
Q 011033 90 VSFPE--VALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGV----QLPRSLKRLDILSC 158 (495)
Q Consensus 90 ~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~----~~~~~L~~L~l~~~ 158 (495)
+.+++ ++.+++|++|++++|......+..+... ++|++|++++|. ++.++.. ...++|+.|+++++
T Consensus 110 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~L~~n 181 (680)
T 1ziw_A 110 QKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQL--ENLQELLLSNNK-IQALKSEELDIFANSSLKKLELSSN 181 (680)
T ss_dssp CCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCC--TTCCEEECCSSC-CCCBCHHHHGGGTTCEESEEECTTC
T ss_pred CccChhHccccCCCCEEECCCCcccccCchhhccc--ccCCEEEccCCc-ccccCHHHhhccccccccEEECCCC
Confidence 66653 7788888888888887444444444444 778888887753 4443322 23467777777764
No 8
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=5e-30 Score=272.35 Aligned_cols=341 Identities=17% Similarity=0.175 Sum_probs=264.6
Q ss_pred ccccccCCCCccEEEEeCCCCCCC------------------CCC-CC--CCCCCcEEEEeCCCCCCccccccccCCCCC
Q 011033 68 LPQSSLSLSSLREIEIYKCSSLVS------------------FPE-VA--LPSKLKIIEIEGCDALKSLPEAWMCDTNSS 126 (495)
Q Consensus 68 l~~~~~~l~~L~~L~l~~~~~l~~------------------l~~-~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 126 (495)
+|..++++++|++|++++| .++. +|. ++ .+++|++|++++|...+.+|..+..+ ++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N-~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L--~~ 516 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL--PE 516 (876)
T ss_dssp ECGGGGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC--SS
T ss_pred hhHHHhcCCCCCEEECcCC-cCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC--CC
Confidence 7888999999999999998 4655 776 66 89999999999999888999888877 89
Q ss_pred ccEEecccCccccc--cccc--------cCCCCccEEEeccCCCcccccccc--ccccCCCCccCcccCccccceeeecC
Q 011033 127 LETLYIEHCRTLTY--LAGV--------QLPRSLKRLDILSCDNIRTLTVEE--GIQSSSSSSSNRRYTSSLLEKLEIRD 194 (495)
Q Consensus 127 L~~L~l~~~~~l~~--~~~~--------~~~~~L~~L~l~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~L~~L~l~~ 194 (495)
|+.|++++|..++. +|.. ..+++|+.|+++++ .+..+ |. .+. .+++|+.|++++
T Consensus 517 L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~i--p~~~~l~-----------~L~~L~~L~Ls~ 582 (876)
T 4ecn_A 517 LQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEF--PASASLQ-----------KMVKLGLLDCVH 582 (876)
T ss_dssp CCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCBC--CCHHHHT-----------TCTTCCEEECTT
T ss_pred CCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCCcc--CChhhhh-----------cCCCCCEEECCC
Confidence 99999999753543 5432 34569999999996 55555 55 342 256799999988
Q ss_pred CCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCC-CcEEeeeCCCCCCcccccCCCCCC--c
Q 011033 195 CPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTS-LETINISGCENLKILPSGLHNLGQ--L 271 (495)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~l~~~~~~l~~--L 271 (495)
+ .++.+ +...-.++|+.|++++|... .+|..+..+++ |+.|++++|. +..+|..+..++. |
T Consensus 583 N-~l~~l-------------p~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L 646 (876)
T 4ecn_A 583 N-KVRHL-------------EAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVM 646 (876)
T ss_dssp S-CCCBC-------------CCCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSC-CCSCCSCCCTTCSSCE
T ss_pred C-Ccccc-------------hhhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCC-CCcCchhhhccccCCC
Confidence 4 44444 21222378999999988766 78888999999 9999999965 5588887776654 9
Q ss_pred cEEEeeCCCCccccCCC---C--CCCCCCcEEEecCccccccccccc-cCCCCcceeEecc-ccccccCCCC--------
Q 011033 272 QEIEIWECENLVSFPEG---G--LPCAKLSKLRIYGCERLEALPKGL-HNLTSLQQLTIGG-ELPSLEEDGL-------- 336 (495)
Q Consensus 272 ~~L~l~~~~~l~~l~~~---~--~~~~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~-~l~~~~~~~~-------- 336 (495)
+.|++++|.....+|.. . ..+++|+.|++++|. +..+|..+ ..+++|+.|++++ .+..+|....
T Consensus 647 ~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~-L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~ 725 (876)
T 4ecn_A 647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE-IQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYK 725 (876)
T ss_dssp EEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC-CCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCT
T ss_pred CEEECcCCcCCCccccchhhhccccCCCcCEEEccCCc-CCccCHHHHccCCCCCEEECCCCcCCccChHHhcccccccc
Confidence 99999999544433321 1 244589999999986 55777655 4899999999999 7777776422
Q ss_pred -CCccceeEeeccCccchhhhcccccCC--CCCccceEEeeccccccccchhhhccccccCCCCCCCceeeecc------
Q 011033 337 -PTNLHSLHIWGNMEIWKSMIERGRGFH--RFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVD------ 407 (495)
Q Consensus 337 -~~~L~~L~l~~~~~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~------ 407 (495)
+++|++|++++|.. . .++. .+. .+++|+.|++++| .+..++... ..+++|+.|++++
T Consensus 726 nl~~L~~L~Ls~N~L-~-~lp~---~l~~~~l~~L~~L~Ls~N--~L~~lp~~l-------~~L~~L~~L~Ls~N~~ls~ 791 (876)
T 4ecn_A 726 NTYLLTTIDLRFNKL-T-SLSD---DFRATTLPYLSNMDVSYN--CFSSFPTQP-------LNSSQLKAFGIRHQRDAEG 791 (876)
T ss_dssp TGGGCCEEECCSSCC-C-CCCG---GGSTTTCTTCCEEECCSS--CCSSCCCGG-------GGCTTCCEEECCCCBCTTC
T ss_pred ccCCccEEECCCCCC-c-cchH---HhhhccCCCcCEEEeCCC--CCCccchhh-------hcCCCCCEEECCCCCCccc
Confidence 13899999999974 3 3333 454 8999999999998 777776654 2567999999987
Q ss_pred cccccccccccccCCCCCeEeccCCCCCCCCCCCCCccccceeeccCCchh
Q 011033 408 FPNLERLSSSIVDLQNLTHLNLVDCPKLKYFPEKGLPSSLLQLSIYRCPLM 458 (495)
Q Consensus 408 ~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l 458 (495)
+.-...+|..+.++++|++|++++|+ ++.+|.. +.++|+.|++++|+..
T Consensus 792 N~l~~~ip~~l~~L~~L~~L~Ls~N~-L~~Ip~~-l~~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 792 NRILRQWPTGITTCPSLIQLQIGSND-IRKVDEK-LTPQLYILDIADNPNI 840 (876)
T ss_dssp CBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSC-CCSSSCEEECCSCTTC
T ss_pred ccccccChHHHhcCCCCCEEECCCCC-CCccCHh-hcCCCCEEECCCCCCC
Confidence 44456788899999999999999965 6889886 5589999999999754
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=1.2e-29 Score=273.47 Aligned_cols=246 Identities=17% Similarity=0.162 Sum_probs=151.5
Q ss_pred CCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCcccc-CCCCCCCCCCcEEE
Q 011033 221 PSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSF-PEGGLPCAKLSKLR 299 (495)
Q Consensus 221 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~ 299 (495)
++|+.|++++|......+..+..+++|+.|++++|......+..+..+++|++|++++|. ++.+ +..+..+++|+.|+
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~ 344 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL-LGELYSSNFYGLPKVAYID 344 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCC-CSCCCSCSCSSCTTCCEEE
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCC-CCccCHHHhcCCCCCCEEE
Confidence 568888888777666666677788888888888865444445667778888888888873 4443 45667777888888
Q ss_pred ecCccccccc-cccccCCCCcceeEecc-ccccccCCCCCCccceeEeeccCccchhhhc-------------------c
Q 011033 300 IYGCERLEAL-PKGLHNLTSLQQLTIGG-ELPSLEEDGLPTNLHSLHIWGNMEIWKSMIE-------------------R 358 (495)
Q Consensus 300 l~~~~~~~~~-~~~l~~l~~L~~L~l~~-~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-------------------~ 358 (495)
+++|. +..+ +..+..+++|++|++++ .+..++. +++|+.|++++|.... ++. .
T Consensus 345 L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~---~~~L~~L~l~~N~l~~--l~~~~~~l~~L~ls~N~l~~l~~ 418 (844)
T 3j0a_A 345 LQKNH-IAIIQDQTFKFLEKLQTLDLRDNALTTIHF---IPSIPDIFLSGNKLVT--LPKINLTANLIHLSENRLENLDI 418 (844)
T ss_dssp CCSCC-CCCCCSSCSCSCCCCCEEEEETCCSCCCSS---CCSCSEEEEESCCCCC--CCCCCTTCCEEECCSCCCCSSTT
T ss_pred CCCCC-CCccChhhhcCCCCCCEEECCCCCCCcccC---CCCcchhccCCCCccc--ccccccccceeecccCccccCch
Confidence 88875 3444 34577788888888877 5554432 3444455444443110 000 0
Q ss_pred cccCCCCCccceEEeeccccccccchhh---------------hccc---------cccCCCCCCCceeeeccccccccc
Q 011033 359 GRGFHRFSSLRHLTIEGCDDDMVSFPLE---------------DKRL---------GTALPLPASLTSLRIVDFPNLERL 414 (495)
Q Consensus 359 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~---------------~~~~---------~~~~~~~~~L~~L~l~~~~~l~~l 414 (495)
...+.++++|+.|++++| .+..++.. .+.+ ...+..+++|+.|++++ +.++.+
T Consensus 419 ~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~ 495 (844)
T 3j0a_A 419 LYFLLRVPHLQILILNQN--RFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNH-NYLNSL 495 (844)
T ss_dssp HHHHTTCTTCCEEEEESC--CCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCH-HHHTTC
T ss_pred hhhhhcCCccceeeCCCC--cccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCC-Cccccc
Confidence 001235566666666665 33221110 0000 11233456788888888 466666
Q ss_pred cc-ccccCCCCCeEeccCCCCCCCCCCCCCccccceeeccCCchhHHhhhcCCCeeeecceEEeccCc
Q 011033 415 SS-SIVDLQNLTHLNLVDCPKLKYFPEKGLPSSLLQLSIYRCPLMEEKCRKDGGLLTHIPSVQIDLNG 481 (495)
Q Consensus 415 ~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~i~~~~~~~i~~~~ 481 (495)
+. .+..+++|++|++++| .++.++...+.++|++|++++|........ .+..+..+.+.+|.
T Consensus 496 ~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~~L~~L~Ls~N~l~~~~~~----~~~~L~~l~l~~Np 558 (844)
T 3j0a_A 496 PPGVFSHLTALRGLSLNSN-RLTVLSHNDLPANLEILDISRNQLLAPNPD----VFVSLSVLDITHNK 558 (844)
T ss_dssp CTTSSSSCCSCSEEEEESC-CCSSCCCCCCCSCCCEEEEEEECCCCCCSC----CCSSCCEEEEEEEC
T ss_pred ChhHccchhhhheeECCCC-CCCccChhhhhccccEEECCCCcCCCCChh----HhCCcCEEEecCCC
Confidence 54 5788899999999994 688888776678899999988854322211 23344555555543
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=3.8e-29 Score=260.62 Aligned_cols=398 Identities=17% Similarity=0.153 Sum_probs=220.0
Q ss_pred ccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCC-CC-CC
Q 011033 19 CSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSF-PE-VA 96 (495)
Q Consensus 19 ~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l-~~-~~ 96 (495)
+++++|++++ +.++.+++. .|.++ ++|++|++++|......|..++.+++|++|++++| .++.+ |. ++
T Consensus 32 ~~l~~L~Ls~-n~l~~~~~~----~~~~l----~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~p~~~~ 101 (606)
T 3vq2_A 32 SSTKNIDLSF-NPLKILKSY----SFSNF----SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN-PIQSFSPGSFS 101 (606)
T ss_dssp TTCCEEECTT-SCCCEECTT----TTTTC----TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCCCCTTSST
T ss_pred CCcCEEECCC-CCcCEeChh----hccCC----ccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC-cccccChhhcC
Confidence 6799999999 678888774 58888 99999999998543444667999999999999998 56666 43 88
Q ss_pred CCCCCcEEEEeCCCCCCccccccccCCCCCccEEecccCcccc--ccccc-cCCCCccEEEeccCCCccccccccccc--
Q 011033 97 LPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLT--YLAGV-QLPRSLKRLDILSCDNIRTLTVEEGIQ-- 171 (495)
Q Consensus 97 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~-- 171 (495)
.+++|++|++++|......+..+... ++|++|++++|. ++ .+|.. ..+++|+.|+++++ .++.+. +..+.
T Consensus 102 ~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~Ls~n-~l~~~~-~~~~~~l 176 (606)
T 3vq2_A 102 GLTSLENLVAVETKLASLESFPIGQL--ITLKKLNVAHNF-IHSCKLPAYFSNLTNLVHVDLSYN-YIQTIT-VNDLQFL 176 (606)
T ss_dssp TCTTCCEEECTTSCCCCSSSSCCTTC--TTCCEEECCSSC-CCCCCCCGGGGTCTTCCEEECCSS-CCCEEC-TTTTHHH
T ss_pred CcccCCEEEccCCccccccccccCCC--CCCCEEeCCCCc-ccceechHhHhhcCCCCEEEccCC-cceecC-hhhhhhh
Confidence 99999999999998443333556555 899999999964 44 34543 77899999999986 444331 11110
Q ss_pred -----------cCCCC---ccCcccCccccceeeecCCCCC--------------ccc-c--------------------
Q 011033 172 -----------SSSSS---SSNRRYTSSLLEKLEIRDCPSL--------------TCI-F-------------------- 202 (495)
Q Consensus 172 -----------~~~~~---~~~~~~~~~~L~~L~l~~~~~l--------------~~~-~-------------------- 202 (495)
-+.+. .........+++.|+++++... +.. .
T Consensus 177 ~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~ 256 (606)
T 3vq2_A 177 RENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIME 256 (606)
T ss_dssp HHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGT
T ss_pred hccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhh
Confidence 00000 0111122235777777664211 000 0
Q ss_pred -------------cCCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccccCCCCC
Q 011033 203 -------------SQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLG 269 (495)
Q Consensus 203 -------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~ 269 (495)
..+.+...++. ..-.++|+.|+++++.. ..+| .+..+++|++|++++|.. ..+|. + .++
T Consensus 257 ~l~~l~l~~l~l~~~~~~~~~~~~---~~~l~~L~~L~l~~~~~-~~l~-~l~~~~~L~~L~l~~n~l-~~lp~-~-~l~ 328 (606)
T 3vq2_A 257 GLCDVTIDEFRLTYTNDFSDDIVK---FHCLANVSAMSLAGVSI-KYLE-DVPKHFKWQSLSIIRCQL-KQFPT-L-DLP 328 (606)
T ss_dssp TGGGSEEEEEEECCCTTCCGGGGS---CGGGTTCSEEEEESCCC-CCCC-CCCTTCCCSEEEEESCCC-SSCCC-C-CCS
T ss_pred hhhhccHhheeccccccccccccc---cccCCCCCEEEecCccc-hhhh-hccccccCCEEEcccccC-ccccc-C-CCC
Confidence 00001100000 01124566666665443 2333 455556666666666443 44542 3 555
Q ss_pred CccEEEeeCCCCccccCCCCCCCCCCcEEEecCccc-------------------------cccccccccCCCCcceeEe
Q 011033 270 QLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCER-------------------------LEALPKGLHNLTSLQQLTI 324 (495)
Q Consensus 270 ~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~-------------------------~~~~~~~l~~l~~L~~L~l 324 (495)
+|++|++++|.....+ .+..+++|+.|++++|.. +..+|..+..+++|++|++
T Consensus 329 ~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l 406 (606)
T 3vq2_A 329 FLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDF 406 (606)
T ss_dssp SCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEEC
T ss_pred ccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeEC
Confidence 5555555555333322 222344444444444432 3333344444555555555
Q ss_pred cc-ccccccC---CCCCCccceeEeeccCccchhhhcccccCCCCCccceEEeecccccccc--chhhhccccccCCCCC
Q 011033 325 GG-ELPSLEE---DGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVS--FPLEDKRLGTALPLPA 398 (495)
Q Consensus 325 ~~-~l~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~~~~~~~~ 398 (495)
++ .+..+++ ...+++|++|++++|.. ....+. .+.++++|++|++++| .+.. ++.. +..++
T Consensus 407 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~---~~~~l~~L~~L~l~~n--~l~~~~~~~~-------~~~l~ 473 (606)
T 3vq2_A 407 QHSTLKRVTEFSAFLSLEKLLYLDISYTNT-KIDFDG---IFLGLTSLNTLKMAGN--SFKDNTLSNV-------FANTT 473 (606)
T ss_dssp TTSEEESTTTTTTTTTCTTCCEEECTTSCC-EECCTT---TTTTCTTCCEEECTTC--EEGGGEECSC-------CTTCT
T ss_pred CCCccCCccChhhhhccccCCEEECcCCCC-Cccchh---hhcCCCCCCEEECCCC--cCCCcchHHh-------hccCC
Confidence 54 3332221 12344555555555542 212222 3455555555555555 3322 1221 23455
Q ss_pred CCceeeecccccccc-cccccccCCCCCeEeccCCCCCCCCCCC--CCccccceeeccCCc
Q 011033 399 SLTSLRIVDFPNLER-LSSSIVDLQNLTHLNLVDCPKLKYFPEK--GLPSSLLQLSIYRCP 456 (495)
Q Consensus 399 ~L~~L~l~~~~~l~~-l~~~~~~~~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~c~ 456 (495)
+|+.|++++| .++. .|..+..+++|++|++++| .+..++.. ..+++|++|++++|.
T Consensus 474 ~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 474 NLTFLDLSKC-QLEQISWGVFDTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTLDCSFNR 532 (606)
T ss_dssp TCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSCEEGGGTTTCTTCCEEECTTSC
T ss_pred CCCEEECCCC-cCCccChhhhcccccCCEEECCCC-cCCCcCHHHccCCCcCCEEECCCCc
Confidence 6777777764 3333 3445666677777777774 35544221 225667777777764
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=3.2e-30 Score=269.00 Aligned_cols=365 Identities=18% Similarity=0.221 Sum_probs=273.0
Q ss_pred HHhhhhhcccccceeecccccCCcc-----------------cccccc--CCCCccEEEEeCCCCCCCCCC-CCCCCCCc
Q 011033 43 QQQQLCELSCRLEYLRLSYCEGLVK-----------------LPQSSL--SLSSLREIEIYKCSSLVSFPE-VALPSKLK 102 (495)
Q Consensus 43 ~~~~l~~~~~~L~~L~ls~~~~l~~-----------------l~~~~~--~l~~L~~L~l~~~~~l~~l~~-~~~~~~L~ 102 (495)
.++++ ++|++|++++|...+. +|..++ ++++|++|++++|...+.+|. ++.+++|+
T Consensus 201 ~l~~l----~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 276 (636)
T 4eco_A 201 AVMRL----TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276 (636)
T ss_dssp GGGGC----TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred HHhcc----cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence 48888 9999999999864343 999988 999999999999977778886 89999999
Q ss_pred EEEEeCCC-CCC-ccccccccC----CCCCccEEecccCcccccccc---ccCCCCccEEEeccCCCcc-cccccccccc
Q 011033 103 IIEIEGCD-ALK-SLPEAWMCD----TNSSLETLYIEHCRTLTYLAG---VQLPRSLKRLDILSCDNIR-TLTVEEGIQS 172 (495)
Q Consensus 103 ~L~l~~~~-~~~-~~~~~~~~~----~~~~L~~L~l~~~~~l~~~~~---~~~~~~L~~L~l~~~~~l~-~~~~~~~~~~ 172 (495)
+|++++|. ... .+|..++.. .+++|++|++++| .++.+|. ...+++|+.|+++++ .++ .+ | .+
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~l~~l~~L~~L~L~~N-~l~g~i--p-~~-- 349 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTFPVETSLQKMKKLGMLECLYN-QLEGKL--P-AF-- 349 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSSCCCHHHHTTCTTCCEEECCSC-CCEEEC--C-CC--
T ss_pred EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCccCchhhhccCCCCCEEeCcCC-cCccch--h-hh--
Confidence 99999997 444 588777542 2378999999996 4668887 378899999999986 454 55 4 22
Q ss_pred CCCCccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCC-ccEEEeecCCCchhhhhhcCCCC--CCcE
Q 011033 173 SSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPS-LKSLFVWYCPKLESIAERLDNNT--SLET 249 (495)
Q Consensus 173 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~--~L~~ 249 (495)
...++|+.|+++++ .++.+ |..+ ..+ ++ |+.|++++|... .+|..+...+ +|+.
T Consensus 350 ---------~~l~~L~~L~L~~N-~l~~l------p~~l-----~~l-~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~ 406 (636)
T 4eco_A 350 ---------GSEIKLASLNLAYN-QITEI------PANF-----CGF-TEQVENLSFAHNKLK-YIPNIFDAKSVSVMSA 406 (636)
T ss_dssp ---------EEEEEESEEECCSS-EEEEC------CTTS-----EEE-CTTCCEEECCSSCCS-SCCSCCCTTCSSCEEE
T ss_pred ---------CCCCCCCEEECCCC-ccccc------cHhh-----hhh-cccCcEEEccCCcCc-ccchhhhhcccCccCE
Confidence 12457999999884 44433 1111 222 56 999999988866 7787776654 8999
Q ss_pred EeeeCCCCCCcccccCC-------CCCCccEEEeeCCCCccccCCC-CCCCCCCcEEEecCccccccccccccC------
Q 011033 250 INISGCENLKILPSGLH-------NLGQLQEIEIWECENLVSFPEG-GLPCAKLSKLRIYGCERLEALPKGLHN------ 315 (495)
Q Consensus 250 L~l~~~~~~~~l~~~~~-------~l~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~------ 315 (495)
|++++|......|..+. .+++|++|++++| .++.+|.. +..+++|+.|++++|. ++.+|.....
T Consensus 407 L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~~~~ 484 (636)
T 4eco_A 407 IDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGNM-LTEIPKNSLKDENENF 484 (636)
T ss_dssp EECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECCSSC-CSBCCSSSSEETTEEC
T ss_pred EECcCCcCCCcchhhhcccccccccCCCCCEEECcCC-ccCcCCHHHHccCCCCCEEECCCCC-CCCcCHHHhccccccc
Confidence 99999876666677777 7889999999998 66677764 3457899999999986 4477764332
Q ss_pred --CCCcceeEecc-ccccccCC-C--CCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccc-----cccccch
Q 011033 316 --LTSLQQLTIGG-ELPSLEED-G--LPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCD-----DDMVSFP 384 (495)
Q Consensus 316 --l~~L~~L~l~~-~l~~~~~~-~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-----~~~~~~~ 384 (495)
+++|++|++++ .+..+|.. . .+++|++|++++|.. .. ++. .+.++++|+.|++++|. .-...+|
T Consensus 485 ~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l-~~-ip~---~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p 559 (636)
T 4eco_A 485 KNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSF-SK-FPT---QPLNSSTLKGFGIRNQRDAQGNRTLREWP 559 (636)
T ss_dssp TTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCC-SS-CCC---GGGGCSSCCEEECCSCBCTTCCBCCCCCC
T ss_pred cccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCC-CC-cCh---hhhcCCCCCEEECCCCcccccCcccccCh
Confidence 23999999999 88788765 3 689999999999984 33 444 57789999999997651 1133444
Q ss_pred hhhccccccCCCCCCCceeeecccccccccccccccCCCCCeEeccCCCCCCCCCCCCC----------ccccceeeccC
Q 011033 385 LEDKRLGTALPLPASLTSLRIVDFPNLERLSSSIVDLQNLTHLNLVDCPKLKYFPEKGL----------PSSLLQLSIYR 454 (495)
Q Consensus 385 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~----------~~~L~~L~l~~ 454 (495)
... ..+++|+.|++++ +.++.+|..+. ++|++|++++|+ +.++..... +...+..++++
T Consensus 560 ~~l-------~~l~~L~~L~Ls~-N~l~~ip~~~~--~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~ 628 (636)
T 4eco_A 560 EGI-------TLCPSLTQLQIGS-NDIRKVNEKIT--PNISVLDIKDNP-NISIDLSYVCPYIEAGMYMLFYDKTQDIRG 628 (636)
T ss_dssp TTG-------GGCSSCCEEECCS-SCCCBCCSCCC--TTCCEEECCSCT-TCEEECTTTHHHHHTTCCEEECCTTSEEES
T ss_pred HHH-------hcCCCCCEEECCC-CcCCccCHhHh--CcCCEEECcCCC-CccccHHhcchhhhcccceeecCCccccCC
Confidence 433 3567999999999 56699997655 899999999965 666543222 12234457778
Q ss_pred CchhH
Q 011033 455 CPLME 459 (495)
Q Consensus 455 c~~l~ 459 (495)
|+.+.
T Consensus 629 C~~L~ 633 (636)
T 4eco_A 629 CDALD 633 (636)
T ss_dssp CGGGC
T ss_pred Ccccc
Confidence 87653
No 12
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=2.9e-29 Score=256.60 Aligned_cols=398 Identities=15% Similarity=0.080 Sum_probs=262.8
Q ss_pred ccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCCCCCC
Q 011033 19 CSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALP 98 (495)
Q Consensus 19 ~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~ 98 (495)
++|++|++++ +.++.++++ .|.++ ++|++|++++|...+..|..++.+++|++|++++| .++.+|.. .+
T Consensus 21 ~~L~~L~Ls~-n~i~~~~~~----~~~~l----~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~-~l 89 (520)
T 2z7x_B 21 QKTTILNISQ-NYISELWTS----DILSL----SKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KLVKISCH-PT 89 (520)
T ss_dssp TTCSEEECCS-SCCCCCCHH----HHTTC----TTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-CCCEEECC-CC
T ss_pred ccccEEECCC-CcccccChh----hcccc----ccccEEecCCCccCCcChHHhhcccCCCEEecCCC-ceeecCcc-cc
Confidence 7899999999 578887764 58888 99999999998554445778999999999999998 77788876 89
Q ss_pred CCCcEEEEeCCCCCC-ccccccccCCCCCccEEecccCccccccccccCCCCc--cEEEeccCCC--ccccccccccccC
Q 011033 99 SKLKIIEIEGCDALK-SLPEAWMCDTNSSLETLYIEHCRTLTYLAGVQLPRSL--KRLDILSCDN--IRTLTVEEGIQSS 173 (495)
Q Consensus 99 ~~L~~L~l~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L--~~L~l~~~~~--l~~~~~~~~~~~~ 173 (495)
++|++|++++|.... .+|..+... ++|++|+++++. ++. .....+++| +.|+++++.. .... +..+..-
T Consensus 90 ~~L~~L~L~~N~l~~~~~p~~~~~l--~~L~~L~L~~n~-l~~-~~~~~l~~L~L~~L~l~~n~l~~~~~~--~~~l~~l 163 (520)
T 2z7x_B 90 VNLKHLDLSFNAFDALPICKEFGNM--SQLKFLGLSTTH-LEK-SSVLPIAHLNISKVLLVLGETYGEKED--PEGLQDF 163 (520)
T ss_dssp CCCSEEECCSSCCSSCCCCGGGGGC--TTCCEEEEEESS-CCG-GGGGGGTTSCEEEEEEEECTTTTSSCC--TTTTTTC
T ss_pred CCccEEeccCCccccccchhhhccC--CcceEEEecCcc-cch-hhccccccceeeEEEeecccccccccc--ccccccc
Confidence 999999999998544 467787777 899999999864 443 223455677 9999988643 1222 2222110
Q ss_pred C----------C-----CccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCC-------------------
Q 011033 174 S----------S-----SSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNL------------------- 219 (495)
Q Consensus 174 ~----------~-----~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~------------------- 219 (495)
. + .........++++.++++++....... .+...++ ....+
T Consensus 164 ~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~---~~~~~~~--~l~~l~~L~~L~l~~~~l~~~~~~ 238 (520)
T 2z7x_B 164 NTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCS---YFLSILA--KLQTNPKLSNLTLNNIETTWNSFI 238 (520)
T ss_dssp CEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTH---HHHHHHH--GGGGCTTCCEEEEEEEEEEHHHHH
T ss_pred ccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccc---eeecchh--hhccccchhhccccccccCHHHHH
Confidence 0 0 000011123455666655532000000 0000000 00011
Q ss_pred -------CCCccEEEeecCCCchhhhhhc-----CCCCCCcEEeeeCCCCCCccc-ccCCCC---CCccEEEeeCCCCcc
Q 011033 220 -------PPSLKSLFVWYCPKLESIAERL-----DNNTSLETINISGCENLKILP-SGLHNL---GQLQEIEIWECENLV 283 (495)
Q Consensus 220 -------~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~l~-~~~~~l---~~L~~L~l~~~~~l~ 283 (495)
.++|++|++++|...+.+|..+ ..+++|+.++++++.. .+| ..+..+ .+|+.|++++|. +.
T Consensus 239 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~-l~ 315 (520)
T 2z7x_B 239 RILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTR-MV 315 (520)
T ss_dssp HHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSC-CC
T ss_pred HHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCc-cc
Confidence 1245555555444443444444 4555555555555332 333 222222 346666666653 22
Q ss_pred ccCCCCCCCCCCcEEEecCccccccccccccCCCCcceeEecc-ccccccC----CCCCCccceeEeeccCccchhhhcc
Q 011033 284 SFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSLEE----DGLPTNLHSLHIWGNMEIWKSMIER 358 (495)
Q Consensus 284 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~----~~~~~~L~~L~l~~~~~~~~~~~~~ 358 (495)
..+ ....+++|+.|++++|.....+|..+..+++|++|++++ .+..++. ...+++|++|++++|.. ...++.
T Consensus 316 ~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l-~~~l~~- 392 (520)
T 2z7x_B 316 HML-CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSV-SYDEKK- 392 (520)
T ss_dssp CCC-CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCC-BCCGGG-
T ss_pred ccc-chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcC-Cccccc-
Confidence 222 125678999999999986666788899999999999999 7665432 35678999999999984 332333
Q ss_pred cccCCCCCccceEEeeccccccccchhhhccccccCCCCCCCceeeecccccccccccccccCCCCCeEeccCCCCCCCC
Q 011033 359 GRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSSIVDLQNLTHLNLVDCPKLKYF 438 (495)
Q Consensus 359 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l 438 (495)
..+..+++|++|++++| .+....... .+++|+.|++++ +.++.+|..+..+++|++|++++| .++.+
T Consensus 393 -~~~~~l~~L~~L~Ls~N--~l~~~~~~~--------l~~~L~~L~Ls~-N~l~~ip~~~~~l~~L~~L~L~~N-~l~~l 459 (520)
T 2z7x_B 393 -GDCSWTKSLLSLNMSSN--ILTDTIFRC--------LPPRIKVLDLHS-NKIKSIPKQVVKLEALQELNVASN-QLKSV 459 (520)
T ss_dssp -CSCCCCTTCCEEECCSS--CCCGGGGGS--------CCTTCCEEECCS-SCCCCCCGGGGGCTTCCEEECCSS-CCCCC
T ss_pred -chhccCccCCEEECcCC--CCCcchhhh--------hcccCCEEECCC-CcccccchhhhcCCCCCEEECCCC-cCCcc
Confidence 25788899999999998 554322222 347999999999 588899988889999999999995 68899
Q ss_pred CCC--CCccccceeeccCCch
Q 011033 439 PEK--GLPSSLLQLSIYRCPL 457 (495)
Q Consensus 439 ~~~--~~~~~L~~L~l~~c~~ 457 (495)
|.. ..+++|++|++++||.
T Consensus 460 ~~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 460 PDGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp CTTTTTTCTTCCEEECCSSCB
T ss_pred CHHHhccCCcccEEECcCCCC
Confidence 875 3378999999999973
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=3e-29 Score=259.47 Aligned_cols=396 Identities=19% Similarity=0.190 Sum_probs=187.7
Q ss_pred ccccccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCC
Q 011033 13 ELLQDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSF 92 (495)
Q Consensus 13 ~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l 92 (495)
..|.++++|++|++++| .++.++++ .|+++ ++|++|++++|......|..++.+++|++|++++| .++.+
T Consensus 46 ~~~~~l~~L~~L~Ls~n-~i~~i~~~----~~~~l----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l 115 (570)
T 2z63_A 46 YSFFSFPELQVLDLSRC-EIQTIEDG----AYQSL----SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASL 115 (570)
T ss_dssp TTTTTCSSCCEEECTTC-CCCEECTT----TTTTC----TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS-CCCCS
T ss_pred hHhhCCCCceEEECCCC-cCCccCcc----cccCc----hhCCEEeCcCCcCCccCHhhhcCcccccccccccc-ccccC
Confidence 34556666666666663 45555543 35555 66666666665322222345666666666666665 45554
Q ss_pred CC--CCCCCCCcEEEEeCCCCCC-ccccccccCCCCCccEEecccCccccccccc--cCCCCc----cEEEeccCCCccc
Q 011033 93 PE--VALPSKLKIIEIEGCDALK-SLPEAWMCDTNSSLETLYIEHCRTLTYLAGV--QLPRSL----KRLDILSCDNIRT 163 (495)
Q Consensus 93 ~~--~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L----~~L~l~~~~~l~~ 163 (495)
+. ++.+++|++|++++|.... .+|..+..+ ++|++|++++| .++.++.. ..+++| +.++++++ .++.
T Consensus 116 ~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l--~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~~~~~L~l~~n-~l~~ 191 (570)
T 2z63_A 116 ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL--TNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSLN-PMNF 191 (570)
T ss_dssp TTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGC--TTCCEEECTTS-CCCEECGGGGHHHHTCTTCCCEEECTTC-CCCE
T ss_pred CCccccccccccEEecCCCccceecChhhhccc--CCCCEEeCcCC-ccceecHHHccchhccchhhhhcccCCC-Ccee
Confidence 43 5666666666666665322 245555544 66666666664 23332211 222333 44555443 2222
Q ss_pred cccccccccCCCCccCcccCccccceeeecCCCC------------------------------CcccccCCCCcc----
Q 011033 164 LTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPS------------------------------LTCIFSQNELPA---- 209 (495)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~------------------------------l~~~~~~~~~~~---- 209 (495)
+ +... +...+++.+++.++.. ++.+ ....+..
T Consensus 192 ~--~~~~-----------~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~-~~~~~~~l~~l 257 (570)
T 2z63_A 192 I--QPGA-----------FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF-DKSALEGLCNL 257 (570)
T ss_dssp E--CTTT-----------TTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEEC-CTTTTGGGGGS
T ss_pred c--CHHH-----------hccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhc-chhhhcccccc
Confidence 2 1100 0111344444433200 0000 0000000
Q ss_pred -----------ccccccc--CCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCccccc------------
Q 011033 210 -----------TLESLEV--GNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSG------------ 264 (495)
Q Consensus 210 -----------~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~------------ 264 (495)
.+..... ..-.++|+.|+++++.. ..+|..+..+ +|+.|++++|. +..+|..
T Consensus 258 ~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l-~~l~~~~~~~-~L~~L~l~~n~-~~~l~~~~l~~L~~L~l~~ 334 (570)
T 2z63_A 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI-ERVKDFSYNF-GWQHLELVNCK-FGQFPTLKLKSLKRLTFTS 334 (570)
T ss_dssp EEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEE-CSCCBCCSCC-CCSEEEEESCB-CSSCCBCBCSSCCEEEEES
T ss_pred chhhhhhhcchhhhhhchhhhcCcCcccEEEecCccc-hhhhhhhccC-CccEEeeccCc-ccccCcccccccCEEeCcC
Confidence 0000000 00014566666665432 2345445555 55555555533 2233321
Q ss_pred --------CCCCCCccEEEeeCCCCcccc---CCCCCCCCCCcEEEecCccccccccccccCCCCcceeEecc-cccccc
Q 011033 265 --------LHNLGQLQEIEIWECENLVSF---PEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSLE 332 (495)
Q Consensus 265 --------~~~l~~L~~L~l~~~~~l~~l---~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~ 332 (495)
...+++|++|++++| .+... +..+..+++|+.|++++|. +..++..+..+++|++|++++ .+...+
T Consensus 335 n~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~ 412 (570)
T 2z63_A 335 NKGGNAFSEVDLPSLEFLDLSRN-GLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMS 412 (570)
T ss_dssp CBSCCBCCCCBCTTCCEEECCSS-CCBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSEEESCT
T ss_pred CccccccccccCCCCCEEeCcCC-ccCccccccccccccCccCEEECCCCc-cccccccccccCCCCEEEccCCcccccc
Confidence 033444455555444 22221 2233344555555555553 333333355566666666665 333332
Q ss_pred C---CCCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccc--cchhhhccccccCCCCCCCceeeecc
Q 011033 333 E---DGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMV--SFPLEDKRLGTALPLPASLTSLRIVD 407 (495)
Q Consensus 333 ~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~~~~~~~~~L~~L~l~~ 407 (495)
. ...+++|++|++++|.... ..+. .+.++++|+.|++++| .+. .++.. +..+++|+.|++++
T Consensus 413 ~~~~~~~l~~L~~L~l~~n~l~~-~~~~---~~~~l~~L~~L~l~~n--~l~~~~~p~~-------~~~l~~L~~L~l~~ 479 (570)
T 2z63_A 413 EFSVFLSLRNLIYLDISHTHTRV-AFNG---IFNGLSSLEVLKMAGN--SFQENFLPDI-------FTELRNLTFLDLSQ 479 (570)
T ss_dssp TSCTTTTCTTCCEEECTTSCCEE-CCTT---TTTTCTTCCEEECTTC--EEGGGEECSC-------CTTCTTCCEEECTT
T ss_pred chhhhhcCCCCCEEeCcCCcccc-cchh---hhhcCCcCcEEECcCC--cCccccchhh-------hhcccCCCEEECCC
Confidence 2 2345566666666665222 2222 4556666666666666 332 23322 23455677777777
Q ss_pred ccccccc-ccccccCCCCCeEeccCCCCCCCCCCCC--CccccceeeccCCc
Q 011033 408 FPNLERL-SSSIVDLQNLTHLNLVDCPKLKYFPEKG--LPSSLLQLSIYRCP 456 (495)
Q Consensus 408 ~~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~l~~~~--~~~~L~~L~l~~c~ 456 (495)
| .++.+ |..+..+++|++|++++| .++.++... .+++|++|++++|+
T Consensus 480 n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 480 C-QLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp S-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred C-ccccCChhhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCc
Confidence 4 34443 556666777777777774 466655432 25677777777654
No 14
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=4.1e-28 Score=256.25 Aligned_cols=281 Identities=16% Similarity=0.172 Sum_probs=171.1
Q ss_pred ccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCC--CC
Q 011033 19 CSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE--VA 96 (495)
Q Consensus 19 ~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~--~~ 96 (495)
+++++|++++ +.++.+++. .|.++ ++|++|++++|...+..|..++++++|++|++++| .++.+|. ++
T Consensus 25 ~~l~~L~Ls~-n~l~~~~~~----~~~~l----~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~ 94 (680)
T 1ziw_A 25 TNITVLNLTH-NQLRRLPAA----NFTRY----SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFA 94 (680)
T ss_dssp TTCSEEECCS-SCCCCCCGG----GGGGG----TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTT
T ss_pred CCCcEEECCC-CCCCCcCHH----HHhCC----CcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccChhhhc
Confidence 6899999999 678888775 58888 99999999998554455777899999999999998 7778875 88
Q ss_pred CCCCCcEEEEeCCCCCCccc-cccccCCCCCccEEecccCccccccccc--cCCCCccEEEeccCCCccccccccccccC
Q 011033 97 LPSKLKIIEIEGCDALKSLP-EAWMCDTNSSLETLYIEHCRTLTYLAGV--QLPRSLKRLDILSCDNIRTLTVEEGIQSS 173 (495)
Q Consensus 97 ~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 173 (495)
.+++|++|++++|. +..++ ..+... ++|++|++++|. ++..+.. ..+++|+.|+++++ .++.+. +..+.
T Consensus 95 ~l~~L~~L~L~~n~-l~~~~~~~~~~l--~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~-- 166 (680)
T 1ziw_A 95 FCTNLTELHLMSNS-IQKIKNNPFVKQ--KNLITLDLSHNG-LSSTKLGTQVQLENLQELLLSNN-KIQALK-SEELD-- 166 (680)
T ss_dssp TCTTCSEEECCSSC-CCCCCSCTTTTC--TTCCEEECCSSC-CSCCCCCSSSCCTTCCEEECCSS-CCCCBC-HHHHG--
T ss_pred cCCCCCEEECCCCc-cCccChhHcccc--CCCCEEECCCCc-ccccCchhhcccccCCEEEccCC-cccccC-HHHhh--
Confidence 99999999999998 45555 455545 899999999964 4443322 57899999999985 343330 11110
Q ss_pred CCCccCcccCccccceeeecCCCCCccc------------------------------------------ccCCCCcccc
Q 011033 174 SSSSSNRRYTSSLLEKLEIRDCPSLTCI------------------------------------------FSQNELPATL 211 (495)
Q Consensus 174 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~------------------------------------------~~~~~~~~~~ 211 (495)
....++|+.|+++++ .++.+ +..+.+.. .
T Consensus 167 -------~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~-~ 237 (680)
T 1ziw_A 167 -------IFANSSLKKLELSSN-QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST-T 237 (680)
T ss_dssp -------GGTTCEESEEECTTC-CCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCE-E
T ss_pred -------ccccccccEEECCCC-cccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccc-c
Confidence 011233555554442 11111 00000000 0
Q ss_pred cccccCCCC-CCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCcc-----cc
Q 011033 212 ESLEVGNLP-PSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLV-----SF 285 (495)
Q Consensus 212 ~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~-----~l 285 (495)
.......+. ++|+.|++++|......+.++..+++|++|++++|......+..+.++++|+.|+++++.... .+
T Consensus 238 ~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l 317 (680)
T 1ziw_A 238 SNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASL 317 (680)
T ss_dssp CTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------C
T ss_pred ChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccc
Confidence 000000010 236777777666555555566667777777776654333344556666666666665542111 11
Q ss_pred C---C-CCCCCCCCcEEEecCccccccccccccCCCCcceeEecc
Q 011033 286 P---E-GGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG 326 (495)
Q Consensus 286 ~---~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 326 (495)
| . .+..+++|+.|++++|......+..+..+++|++|++++
T Consensus 318 p~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 362 (680)
T 1ziw_A 318 PKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSN 362 (680)
T ss_dssp CEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTT
T ss_pred cccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCC
Confidence 1 1 344556666666666653333334455666666666554
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=8.8e-30 Score=262.26 Aligned_cols=128 Identities=19% Similarity=0.187 Sum_probs=72.7
Q ss_pred ccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCC--CC
Q 011033 19 CSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE--VA 96 (495)
Q Consensus 19 ~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~--~~ 96 (495)
++|++|++++ +.++.+++. .|.++ ++|++|++++|......|..++.+++|++|++++| .++.+++ ++
T Consensus 26 ~~L~~L~Ls~-n~l~~~~~~----~~~~l----~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~ 95 (549)
T 2z81_A 26 AAMKSLDLSF-NKITYIGHG----DLRAC----ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFG 95 (549)
T ss_dssp TTCCEEECCS-SCCCEECSS----TTSSC----TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCSCCHHHHT
T ss_pred CCccEEECcC-CccCccChh----hhhcC----CcccEEECCCCCcCccChhhccccccCCEEECCCC-ccCccCHHHhc
Confidence 4666777766 346555443 35555 66677777666333333345666666667776666 4444443 66
Q ss_pred CCCCCcEEEEeCCCCCC-ccccccccCCCCCccEEecccCcccccccc--ccCCCCccEEEeccC
Q 011033 97 LPSKLKIIEIEGCDALK-SLPEAWMCDTNSSLETLYIEHCRTLTYLAG--VQLPRSLKRLDILSC 158 (495)
Q Consensus 97 ~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~ 158 (495)
.+++|++|++++|.... ..|..+... ++|++|++++|..+..++. ...+++|+.|+++++
T Consensus 96 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l--~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n 158 (549)
T 2z81_A 96 PLSSLKYLNLMGNPYQTLGVTSLFPNL--TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL 158 (549)
T ss_dssp TCTTCCEEECTTCCCSSSCSSCSCTTC--TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred cCCCCcEEECCCCcccccchhhhhhcc--CCccEEECCCCccccccCHhhhhcccccCeeeccCC
Confidence 66666666666665222 233444333 6666666666544555442 245566666666654
No 16
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=1.2e-28 Score=261.83 Aligned_cols=346 Identities=16% Similarity=0.184 Sum_probs=258.5
Q ss_pred HHhhhhhcccccceeecccccCCc-----------------ccccccc--CCCCccEEEEeCCCCCCCCCC-CCCCCCCc
Q 011033 43 QQQQLCELSCRLEYLRLSYCEGLV-----------------KLPQSSL--SLSSLREIEIYKCSSLVSFPE-VALPSKLK 102 (495)
Q Consensus 43 ~~~~l~~~~~~L~~L~ls~~~~l~-----------------~l~~~~~--~l~~L~~L~l~~~~~l~~l~~-~~~~~~L~ 102 (495)
.++++ ++|++|+|++|...+ .+|..++ ++++|++|++++|...+.+|. ++.+++|+
T Consensus 443 ~l~~L----~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~ 518 (876)
T 4ecn_A 443 AIQRL----TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518 (876)
T ss_dssp GGGGC----TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCC
T ss_pred HHhcC----CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCC
Confidence 48888 999999999986544 2898887 999999999999977778886 88999999
Q ss_pred EEEEeCCCCCC--ccccccccC-----CCCCccEEecccCcccccccc---ccCCCCccEEEeccCCCcccccccccccc
Q 011033 103 IIEIEGCDALK--SLPEAWMCD-----TNSSLETLYIEHCRTLTYLAG---VQLPRSLKRLDILSCDNIRTLTVEEGIQS 172 (495)
Q Consensus 103 ~L~l~~~~~~~--~~~~~~~~~-----~~~~L~~L~l~~~~~l~~~~~---~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 172 (495)
.|++++|..+. .+|..+... .+++|+.|++++| .++.+|. ...+++|+.|+++++ .++.+ | .+
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~l~~L~~L~~L~Ls~N-~l~~l--p-~~-- 591 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFPASASLQKMVKLGLLDCVHN-KVRHL--E-AF-- 591 (876)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCBCCCHHHHTTCTTCCEEECTTS-CCCBC--C-CC--
T ss_pred EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCCccCChhhhhcCCCCCEEECCCC-Ccccc--h-hh--
Confidence 99999997344 577766544 2258999999996 4668887 478899999999996 45555 5 33
Q ss_pred CCCCccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCC-ccEEEeecCCCchhhhhhcCCCCC--CcE
Q 011033 173 SSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPS-LKSLFVWYCPKLESIAERLDNNTS--LET 249 (495)
Q Consensus 173 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~--L~~ 249 (495)
...++|+.|+++++ .++.+ |.. ...+ ++ |+.|++++|... .+|..+...+. |+.
T Consensus 592 ---------~~L~~L~~L~Ls~N-~l~~l------p~~-----l~~l-~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~ 648 (876)
T 4ecn_A 592 ---------GTNVKLTDLKLDYN-QIEEI------PED-----FCAF-TDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGS 648 (876)
T ss_dssp ---------CTTSEESEEECCSS-CCSCC------CTT-----SCEE-CTTCCEEECCSSCCC-SCCSCCCTTCSSCEEE
T ss_pred ---------cCCCcceEEECcCC-ccccc------hHH-----Hhhc-cccCCEEECcCCCCC-cCchhhhccccCCCCE
Confidence 12567999999884 44433 211 1222 56 999999988755 77877776654 999
Q ss_pred EeeeCCCCCCccc---ccCC--CCCCccEEEeeCCCCccccCCCC-CCCCCCcEEEecCccccccccccccC--------
Q 011033 250 INISGCENLKILP---SGLH--NLGQLQEIEIWECENLVSFPEGG-LPCAKLSKLRIYGCERLEALPKGLHN-------- 315 (495)
Q Consensus 250 L~l~~~~~~~~l~---~~~~--~l~~L~~L~l~~~~~l~~l~~~~-~~~~~L~~L~l~~~~~~~~~~~~l~~-------- 315 (495)
|++++|.....+| ..+. .+++|+.|++++| .+..+|... ..+++|+.|++++|. ++.+|..+..
T Consensus 649 L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N-~L~~lp~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~~~~~~~l~n 726 (876)
T 4ecn_A 649 VDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN-EIQKFPTELFATGSPISTIILSNNL-MTSIPENSLKPKDGNYKN 726 (876)
T ss_dssp EECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS-CCCSCCHHHHHTTCCCSEEECCSCC-CSCCCTTSSSCTTSCCTT
T ss_pred EECcCCcCCCccccchhhhccccCCCcCEEEccCC-cCCccCHHHHccCCCCCEEECCCCc-CCccChHHhccccccccc
Confidence 9999976544333 2233 3469999999998 566777644 367899999999985 5577765443
Q ss_pred CCCcceeEecc-ccccccCC-C--CCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccc----cc-cccchhh
Q 011033 316 LTSLQQLTIGG-ELPSLEED-G--LPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCD----DD-MVSFPLE 386 (495)
Q Consensus 316 l~~L~~L~l~~-~l~~~~~~-~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----~~-~~~~~~~ 386 (495)
+++|+.|++++ .+..+|.. . .+++|+.|++++|.. .. ++. .+.++++|+.|++++|. .. ...+|..
T Consensus 727 l~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L-~~-lp~---~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~ 801 (876)
T 4ecn_A 727 TYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCF-SS-FPT---QPLNSSQLKAFGIRHQRDAEGNRILRQWPTG 801 (876)
T ss_dssp GGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCC-SS-CCC---GGGGCTTCCEEECCCCBCTTCCBCCCCCCTT
T ss_pred cCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCC-Cc-cch---hhhcCCCCCEEECCCCCCcccccccccChHH
Confidence 33999999999 77787765 3 689999999999974 33 343 57799999999998852 12 3334433
Q ss_pred hccccccCCCCCCCceeeecccccccccccccccCCCCCeEeccCCCCCCCCCC
Q 011033 387 DKRLGTALPLPASLTSLRIVDFPNLERLSSSIVDLQNLTHLNLVDCPKLKYFPE 440 (495)
Q Consensus 387 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~ 440 (495)
. ..+++|+.|++++ +.++.+|..+. ++|+.|++++|+ +..+..
T Consensus 802 l-------~~L~~L~~L~Ls~-N~L~~Ip~~l~--~~L~~LdLs~N~-l~~i~~ 844 (876)
T 4ecn_A 802 I-------TTCPSLIQLQIGS-NDIRKVDEKLT--PQLYILDIADNP-NISIDV 844 (876)
T ss_dssp G-------GGCSSCCEEECCS-SCCCBCCSCCC--SSSCEEECCSCT-TCEEEC
T ss_pred H-------hcCCCCCEEECCC-CCCCccCHhhc--CCCCEEECCCCC-CCccCh
Confidence 3 3567999999999 46699997655 799999999976 665543
No 17
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=2.1e-28 Score=253.24 Aligned_cols=386 Identities=15% Similarity=0.131 Sum_probs=259.8
Q ss_pred hcCccccccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccc-cccCCCCccEEEEeCCCC
Q 011033 10 SHNELLQDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQ-SSLSLSSLREIEIYKCSS 88 (495)
Q Consensus 10 ~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~-~~~~l~~L~~L~l~~~~~ 88 (495)
.+...|.++++|++|++++ +.++.++++ .|.++ ++|++|++++| .+..++. .++.+++|++|++++| .
T Consensus 67 i~~~~~~~l~~L~~L~L~~-n~l~~~~~~----~~~~l----~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n-~ 135 (570)
T 2z63_A 67 IEDGAYQSLSHLSTLILTG-NPIQSLALG----AFSGL----SSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHN-L 135 (570)
T ss_dssp ECTTTTTTCTTCCEEECTT-CCCCEECTT----TTTTC----TTCCEEECTTS-CCCCSTTCSCTTCTTCCEEECCSS-C
T ss_pred cCcccccCchhCCEEeCcC-CcCCccCHh----hhcCc----ccccccccccc-ccccCCCccccccccccEEecCCC-c
Confidence 3456688999999999999 568888764 58888 99999999998 5566654 5899999999999998 5
Q ss_pred CCC--CCC-CCCCCCCcEEEEeCCCCCCccccccccCCCCCc----cEEecccCccccccccc-cCCCCccEEEeccCCC
Q 011033 89 LVS--FPE-VALPSKLKIIEIEGCDALKSLPEAWMCDTNSSL----ETLYIEHCRTLTYLAGV-QLPRSLKRLDILSCDN 160 (495)
Q Consensus 89 l~~--l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L----~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~ 160 (495)
+.. +|. ++.+++|++|++++|......+..+... ++| +.|+++++. ++.++.. ....+|+.|+++++..
T Consensus 136 l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~~~~~L~l~~n~-l~~~~~~~~~~~~L~~L~l~~n~~ 212 (570)
T 2z63_A 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL--HQMPLLNLSLDLSLNP-MNFIQPGAFKEIRLHKLTLRNNFD 212 (570)
T ss_dssp CCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHH--HTCTTCCCEEECTTCC-CCEECTTTTTTCEEEEEEEESCCS
T ss_pred cceecChhhhcccCCCCEEeCcCCccceecHHHccch--hccchhhhhcccCCCC-ceecCHHHhccCcceeEecccccc
Confidence 554 454 8889999999999988444334444444 556 778887753 4443332 2223566666655310
Q ss_pred c------------------------------cccccccccccC-----------------CCCccCcccCccccceeeec
Q 011033 161 I------------------------------RTLTVEEGIQSS-----------------SSSSSNRRYTSSLLEKLEIR 193 (495)
Q Consensus 161 l------------------------------~~~~~~~~~~~~-----------------~~~~~~~~~~~~~L~~L~l~ 193 (495)
- +.+ +...... ...........++++.++++
T Consensus 213 ~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~--~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 290 (570)
T 2z63_A 213 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF--DKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLV 290 (570)
T ss_dssp CTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEEC--CTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEE
T ss_pred cccchhhhhcCccccceeeeccccccCchhhhhc--chhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEec
Confidence 0 000 0000000 00000011123345555554
Q ss_pred CCCCCccc-------------ccCCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCc
Q 011033 194 DCPSLTCI-------------FSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKI 260 (495)
Q Consensus 194 ~~~~l~~~-------------~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 260 (495)
++ .++.+ +..+.+. ..+.. ..++|+.|++.+|......+. ..+++|++|++++|. +..
T Consensus 291 ~~-~l~~l~~~~~~~~L~~L~l~~n~~~----~l~~~-~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~-l~~ 361 (570)
T 2z63_A 291 SV-TIERVKDFSYNFGWQHLELVNCKFG----QFPTL-KLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNG-LSF 361 (570)
T ss_dssp SC-EECSCCBCCSCCCCSEEEEESCBCS----SCCBC-BCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSC-CBE
T ss_pred Cc-cchhhhhhhccCCccEEeeccCccc----ccCcc-cccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCc-cCc
Confidence 42 11111 0000000 00121 236788888887765554443 678999999999864 333
Q ss_pred c---cccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCcccccccc-ccccCCCCcceeEecc-ccccccCC-
Q 011033 261 L---PSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALP-KGLHNLTSLQQLTIGG-ELPSLEED- 334 (495)
Q Consensus 261 l---~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~-~l~~~~~~- 334 (495)
. +..+..+++|++|++++| .+..++..+..+++|+.|++++|......+ ..+..+++|++|++++ .+....+.
T Consensus 362 ~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 440 (570)
T 2z63_A 362 KGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 440 (570)
T ss_dssp EEEEEHHHHTCSCCCEEECCSC-SEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTT
T ss_pred cccccccccccCccCEEECCCC-ccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhh
Confidence 3 566788999999999998 566666557788999999999987554444 3688999999999999 66554332
Q ss_pred -CCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccCCCCCCCceeeecccccccc
Q 011033 335 -GLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLER 413 (495)
Q Consensus 335 -~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 413 (495)
..+++|++|++++|.......+. .+..+++|+.|++++| .+..+.... +..+++|+.|++++ +.++.
T Consensus 441 ~~~l~~L~~L~l~~n~l~~~~~p~---~~~~l~~L~~L~l~~n--~l~~~~~~~------~~~l~~L~~L~l~~-n~l~~ 508 (570)
T 2z63_A 441 FNGLSSLEVLKMAGNSFQENFLPD---IFTELRNLTFLDLSQC--QLEQLSPTA------FNSLSSLQVLNMAS-NQLKS 508 (570)
T ss_dssp TTTCTTCCEEECTTCEEGGGEECS---CCTTCTTCCEEECTTS--CCCEECTTT------TTTCTTCCEEECCS-SCCSC
T ss_pred hhcCCcCcEEECcCCcCccccchh---hhhcccCCCEEECCCC--ccccCChhh------hhcccCCCEEeCCC-CcCCC
Confidence 55789999999999844333444 7899999999999998 666663321 23567999999999 46777
Q ss_pred ccc-ccccCCCCCeEeccCCC
Q 011033 414 LSS-SIVDLQNLTHLNLVDCP 433 (495)
Q Consensus 414 l~~-~~~~~~~L~~L~l~~c~ 433 (495)
++. .+..+++|++|++++|+
T Consensus 509 ~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 509 VPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp CCTTTTTTCTTCCEEECCSSC
T ss_pred CCHHHhhcccCCcEEEecCCc
Confidence 664 68899999999999976
No 18
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=8e-28 Score=259.18 Aligned_cols=410 Identities=17% Similarity=0.106 Sum_probs=251.2
Q ss_pred hhcCccccccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCC
Q 011033 9 KSHNELLQDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSS 88 (495)
Q Consensus 9 ~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~ 88 (495)
......|.++++|++|++++|..+..++++ .|.++ ++|++|++++|......|..++.+++|++|++++|..
T Consensus 38 ~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~----~f~~L----~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l 109 (844)
T 3j0a_A 38 TVTASSFPFLEQLQLLELGSQYTPLTIDKE----AFRNL----PNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGL 109 (844)
T ss_dssp EECSSSCSSCCSCSEEEECTTCCCCEECTT----TTSSC----TTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCC
T ss_pred ccChhHCcccccCeEEeCCCCCCccccCHH----HhcCC----CCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCC
Confidence 344567888999999999997667777554 58888 9999999999855445577899999999999999843
Q ss_pred CCCCCC---CCCCCCCcEEEEeCCCCCCccc-cccccCCCCCccEEecccCccccccccc--cCC--CC-----------
Q 011033 89 LVSFPE---VALPSKLKIIEIEGCDALKSLP-EAWMCDTNSSLETLYIEHCRTLTYLAGV--QLP--RS----------- 149 (495)
Q Consensus 89 l~~l~~---~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~--~~----------- 149 (495)
...++. ++.+++|++|++++|......+ ..+..+ ++|++|++++|. ++.+... ..+ ++
T Consensus 110 ~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L--~~L~~L~Ls~N~-i~~~~~~~l~~l~~~~L~~L~L~~n~l 186 (844)
T 3j0a_A 110 SDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKL--NSLKSIDFSSNQ-IFLVCEHELEPLQGKTLSFFSLAANSL 186 (844)
T ss_dssp SSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTC--SSCCEEEEESSC-CCCCCSGGGHHHHHCSSCCCEECCSBS
T ss_pred CcccccCccccccCCCCEEECCCCcccccccchhHhhC--CCCCEEECCCCc-CCeeCHHHcccccCCccceEECCCCcc
Confidence 333433 7889999999999987444333 345555 889999998853 3222111 111 34
Q ss_pred -------------------ccEEEeccCCCccccccccccccCC---------------------------CCccCcccC
Q 011033 150 -------------------LKRLDILSCDNIRTLTVEEGIQSSS---------------------------SSSSNRRYT 183 (495)
Q Consensus 150 -------------------L~~L~l~~~~~l~~~~~~~~~~~~~---------------------------~~~~~~~~~ 183 (495)
|+.|+++++...... +..+.... .........
T Consensus 187 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~--~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~ 264 (844)
T 3j0a_A 187 YSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDI--TGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLA 264 (844)
T ss_dssp CCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTT--TSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTT
T ss_pred ccccccchhhcCCccccCceeEEecCCCcCchhH--HHHHHhhcCcccccceecccccccccccccccCCCChhhhhccc
Confidence 444444443110000 10000000 000000111
Q ss_pred ccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccc
Q 011033 184 SSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPS 263 (495)
Q Consensus 184 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~ 263 (495)
.++++.|+++++ .+..+ .. ....-.++|+.|++++|......+..+..+++|+.|++++|......+.
T Consensus 265 ~~~L~~L~Ls~n-~l~~~----------~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 332 (844)
T 3j0a_A 265 RSSVRHLDLSHG-FVFSL----------NS-RVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSS 332 (844)
T ss_dssp TSCCCEEECTTC-CCCEE----------CS-CCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSC
T ss_pred cCCccEEECCCC-ccccc----------Ch-hhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHH
Confidence 234555555552 22222 00 0011126788888887777666666777888888888887644333356
Q ss_pred cCCCCCCccEEEeeCCCCccccCC-CCCCCCCCcEEEecCcccccccc-------------------c------------
Q 011033 264 GLHNLGQLQEIEIWECENLVSFPE-GGLPCAKLSKLRIYGCERLEALP-------------------K------------ 311 (495)
Q Consensus 264 ~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~-------------------~------------ 311 (495)
.+..+++|+.|++++| .+..++. .+..+++|+.|++++|. ++.++ .
T Consensus 333 ~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~ 410 (844)
T 3j0a_A 333 NFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDNA-LTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSE 410 (844)
T ss_dssp SCSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEEETCC-SCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCS
T ss_pred HhcCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEECCCCC-CCcccCCCCcchhccCCCCcccccccccccceeeccc
Confidence 6777888888888877 4555443 45566777777777764 22221 1
Q ss_pred ----------cccCCCCcceeEecc-ccccccCC---CCCCccceeEeeccCccchhh-hcccccCCCCCccceEEeecc
Q 011033 312 ----------GLHNLTSLQQLTIGG-ELPSLEED---GLPTNLHSLHIWGNMEIWKSM-IERGRGFHRFSSLRHLTIEGC 376 (495)
Q Consensus 312 ----------~l~~l~~L~~L~l~~-~l~~~~~~---~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~l~~L~~L~l~~~ 376 (495)
.+..+++|+.|++++ .+..++.. ..+++|++|++++|....... ......+.++++|+.|++++|
T Consensus 411 N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N 490 (844)
T 3j0a_A 411 NRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN 490 (844)
T ss_dssp CCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHH
T ss_pred CccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCC
Confidence 122456666666666 44433222 234667777777765321000 000124667788888888887
Q ss_pred ccccccchhhhccccccCCCCCCCceeeecccccccccccccccCCCCCeEeccCCCCCCCCCCCCCccccceeeccCCc
Q 011033 377 DDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSSIVDLQNLTHLNLVDCPKLKYFPEKGLPSSLLQLSIYRCP 456 (495)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~ 456 (495)
.+..++... +..+++|+.|++++ +.++.+|...-. ++|+.|++++| +++.++... +++|++|++++||
T Consensus 491 --~l~~~~~~~------~~~l~~L~~L~Ls~-N~l~~l~~~~~~-~~L~~L~Ls~N-~l~~~~~~~-~~~L~~l~l~~Np 558 (844)
T 3j0a_A 491 --YLNSLPPGV------FSHLTALRGLSLNS-NRLTVLSHNDLP-ANLEILDISRN-QLLAPNPDV-FVSLSVLDITHNK 558 (844)
T ss_dssp --HHTTCCTTS------SSSCCSCSEEEEES-CCCSSCCCCCCC-SCCCEEEEEEE-CCCCCCSCC-CSSCCEEEEEEEC
T ss_pred --cccccChhH------ccchhhhheeECCC-CCCCccChhhhh-ccccEEECCCC-cCCCCChhH-hCCcCEEEecCCC
Confidence 666655532 34678999999999 688888763322 89999999995 577766543 4689999999886
Q ss_pred h
Q 011033 457 L 457 (495)
Q Consensus 457 ~ 457 (495)
.
T Consensus 559 ~ 559 (844)
T 3j0a_A 559 F 559 (844)
T ss_dssp C
T ss_pred c
Confidence 3
No 19
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.96 E-value=2.1e-27 Score=239.13 Aligned_cols=348 Identities=17% Similarity=0.205 Sum_probs=224.3
Q ss_pred ccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCCCC
Q 011033 17 DICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVA 96 (495)
Q Consensus 17 ~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~ 96 (495)
.+++++.|+++++ .++.++. +..+ ++|++|++++| .+..++. +..+++|++|++++| .+..++.++
T Consensus 44 ~l~~l~~L~l~~~-~i~~l~~------~~~l----~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~ 109 (466)
T 1o6v_A 44 DLDQVTTLQADRL-GIKSIDG------VEYL----NNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNN-QIADITPLA 109 (466)
T ss_dssp HHHTCCEEECCSS-CCCCCTT------GGGC----TTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCCGGGT
T ss_pred HhccccEEecCCC-CCccCcc------hhhh----cCCCEEECCCC-ccCCchh-hhccccCCEEECCCC-ccccChhhc
Confidence 3678999999984 6777654 6666 99999999997 5566665 888999999999987 666666688
Q ss_pred CCCCCcEEEEeCCCCCCccccccccCCCCCccEEecccCccccccccccCCCCccEEEeccCCCccccccccccccCCCC
Q 011033 97 LPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQSSSSS 176 (495)
Q Consensus 97 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 176 (495)
.+++|++|++++|. +..++. +... ++|++|++++| .+..++....+++|+.|.+.+ .+..+ +. +
T Consensus 110 ~l~~L~~L~L~~n~-l~~~~~-~~~l--~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~--~~~~~--~~-~------ 173 (466)
T 1o6v_A 110 NLTNLTGLTLFNNQ-ITDIDP-LKNL--TNLNRLELSSN-TISDISALSGLTSLQQLSFGN--QVTDL--KP-L------ 173 (466)
T ss_dssp TCTTCCEEECCSSC-CCCCGG-GTTC--TTCSEEEEEEE-EECCCGGGTTCTTCSEEEEEE--SCCCC--GG-G------
T ss_pred CCCCCCEEECCCCC-CCCChH-HcCC--CCCCEEECCCC-ccCCChhhccCCcccEeecCC--cccCc--hh-h------
Confidence 89999999999987 555654 4434 88999999885 466666667788888888864 22222 11 1
Q ss_pred ccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCC
Q 011033 177 SSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCE 256 (495)
Q Consensus 177 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 256 (495)
...++|+.|+++++. ++.+ +...-.++|++|++++|...+..+ +..+++|++|++++|.
T Consensus 174 -----~~l~~L~~L~l~~n~-l~~~-------------~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~ 232 (466)
T 1o6v_A 174 -----ANLTTLERLDISSNK-VSDI-------------SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQ 232 (466)
T ss_dssp -----TTCTTCCEEECCSSC-CCCC-------------GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSC
T ss_pred -----ccCCCCCEEECcCCc-CCCC-------------hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCC
Confidence 124567777777742 3332 111122667777777666554433 5567777777777743
Q ss_pred CCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCccccccccccccCCCCcceeEecc-ccccccCCC
Q 011033 257 NLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSLEEDG 335 (495)
Q Consensus 257 ~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~~ 335 (495)
+..+ ..+..+++|++|++++| .+..++. +..+++|+.|++++|. +..++. +..+++|++|++++ .+..++...
T Consensus 233 -l~~~-~~l~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~ 306 (466)
T 1o6v_A 233 -LKDI-GTLASLTNLTDLDLANN-QISNLAP-LSGLTKLTELKLGANQ-ISNISP-LAGLTALTNLELNENQLEDISPIS 306 (466)
T ss_dssp -CCCC-GGGGGCTTCSEEECCSS-CCCCCGG-GTTCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEECCSSCCSCCGGGG
T ss_pred -cccc-hhhhcCCCCCEEECCCC-ccccchh-hhcCCCCCEEECCCCc-cCcccc-ccCCCccCeEEcCCCcccCchhhc
Confidence 4444 24566777777777776 3444333 4556677777777764 444443 66777777777777 666655555
Q ss_pred CCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccCCCCCCCceeeecccccccccc
Q 011033 336 LPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLS 415 (495)
Q Consensus 336 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~ 415 (495)
.+++|++|++++|.. .... .+..+++|+.|++++| .+..++.- ..+++|+.|++++| .++.++
T Consensus 307 ~l~~L~~L~L~~n~l-~~~~-----~~~~l~~L~~L~l~~n--~l~~~~~l--------~~l~~L~~L~l~~n-~l~~~~ 369 (466)
T 1o6v_A 307 NLKNLTYLTLYFNNI-SDIS-----PVSSLTKLQRLFFYNN--KVSDVSSL--------ANLTNINWLSAGHN-QISDLT 369 (466)
T ss_dssp GCTTCSEEECCSSCC-SCCG-----GGGGCTTCCEEECCSS--CCCCCGGG--------TTCTTCCEEECCSS-CCCBCG
T ss_pred CCCCCCEEECcCCcC-CCch-----hhccCccCCEeECCCC--ccCCchhh--------ccCCCCCEEeCCCC-ccCccc
Confidence 566777777777752 2121 1456677777777776 45544322 24556777777764 344443
Q ss_pred cccccCCCCCeEeccCCCCCCCCCC
Q 011033 416 SSIVDLQNLTHLNLVDCPKLKYFPE 440 (495)
Q Consensus 416 ~~~~~~~~L~~L~l~~c~~l~~l~~ 440 (495)
. +..+++|++|++++|+ +..+|.
T Consensus 370 ~-~~~l~~L~~L~l~~n~-~~~~p~ 392 (466)
T 1o6v_A 370 P-LANLTRITQLGLNDQA-WTNAPV 392 (466)
T ss_dssp G-GTTCTTCCEEECCCEE-EECCCB
T ss_pred h-hhcCCCCCEEeccCCc-ccCCch
Confidence 2 6667777777777743 444443
No 20
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=9.5e-28 Score=247.06 Aligned_cols=410 Identities=17% Similarity=0.190 Sum_probs=257.0
Q ss_pred cCccccccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCcccc-ccccCCCCccEEEEeCCCCC
Q 011033 11 HNELLQDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLP-QSSLSLSSLREIEIYKCSSL 89 (495)
Q Consensus 11 ~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~-~~~~~l~~L~~L~l~~~~~l 89 (495)
....|.++++|++|++++ +.++.++++ .|.++ ++|++|++++|.. ..++ ..++.+++|++|++++| .+
T Consensus 42 ~~~~~~~l~~L~~L~Ls~-n~i~~~~~~----~~~~l----~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~n-~l 110 (549)
T 2z81_A 42 GHGDLRACANLQVLILKS-SRINTIEGD----AFYSL----GSLEHLDLSDNHL-SSLSSSWFGPLSSLKYLNLMGN-PY 110 (549)
T ss_dssp CSSTTSSCTTCCEEECTT-SCCCEECTT----TTTTC----TTCCEEECTTSCC-CSCCHHHHTTCTTCCEEECTTC-CC
T ss_pred ChhhhhcCCcccEEECCC-CCcCccChh----hcccc----ccCCEEECCCCcc-CccCHHHhccCCCCcEEECCCC-cc
Confidence 355678899999999999 578877764 57888 9999999999844 5444 45889999999999998 55
Q ss_pred CCC--C-CCCCCCCCcEEEEeCCCCCCcccc-ccccCCCCCccEEecccCccccccccc-cCCCCccEEEeccCCC----
Q 011033 90 VSF--P-EVALPSKLKIIEIEGCDALKSLPE-AWMCDTNSSLETLYIEHCRTLTYLAGV-QLPRSLKRLDILSCDN---- 160 (495)
Q Consensus 90 ~~l--~-~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~---- 160 (495)
+.+ + .++.+++|++|++++|..++.+|. .+... ++|++|++++|..-...+.. ..+++|+.|+++++..
T Consensus 111 ~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 188 (549)
T 2z81_A 111 QTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL--TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLL 188 (549)
T ss_dssp SSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTC--CEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHH
T ss_pred cccchhhhhhccCCccEEECCCCccccccCHhhhhcc--cccCeeeccCCcccccChhhhhccccCceEecccCcccccc
Confidence 533 3 378899999999999876666664 44444 88999999886432223332 4455666666554321
Q ss_pred ---------ccccccccccccCCC-CccCcccCccccceeeecCCC-----------------CCccc-ccCCCCcc--c
Q 011033 161 ---------IRTLTVEEGIQSSSS-SSSNRRYTSSLLEKLEIRDCP-----------------SLTCI-FSQNELPA--T 210 (495)
Q Consensus 161 ---------l~~~~~~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~-----------------~l~~~-~~~~~~~~--~ 210 (495)
++.+++...--.... .........++++.|++.++. .++.+ +..+...+ .
T Consensus 189 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~ 268 (549)
T 2z81_A 189 EIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGD 268 (549)
T ss_dssp HHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSC
T ss_pred hhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccccccc
Confidence 111100000000000 000000012234444433310 00000 00000000 0
Q ss_pred ccc--cccCCCCCCccEEEeecCCCchh-----hhhhcCCCCCCcEEeeeCCCCCCcccccC-CCCCCccEEEeeCCCCc
Q 011033 211 LES--LEVGNLPPSLKSLFVWYCPKLES-----IAERLDNNTSLETINISGCENLKILPSGL-HNLGQLQEIEIWECENL 282 (495)
Q Consensus 211 ~~~--~~~~~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~l~~~~-~~l~~L~~L~l~~~~~l 282 (495)
+.. .......++++.+.+.++..... ++..+...++|+.|++++| .+..+|..+ ..+++|++|++++|...
T Consensus 269 ~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n-~l~~ip~~~~~~l~~L~~L~Ls~N~l~ 347 (549)
T 2z81_A 269 FNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS-KVFLVPCSFSQHLKSLEFLDLSENLMV 347 (549)
T ss_dssp CCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESS-CCCCCCHHHHHHCTTCCEEECCSSCCC
T ss_pred ccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccC-ccccCCHHHHhcCccccEEEccCCccc
Confidence 000 00001124566666654432211 1111223467889999885 466777665 46899999999998544
Q ss_pred cccC---CCCCCCCCCcEEEecCcccccccc---ccccCCCCcceeEecc-ccccccCC-CCCCccceeEeeccCccchh
Q 011033 283 VSFP---EGGLPCAKLSKLRIYGCERLEALP---KGLHNLTSLQQLTIGG-ELPSLEED-GLPTNLHSLHIWGNMEIWKS 354 (495)
Q Consensus 283 ~~l~---~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~~-~l~~~~~~-~~~~~L~~L~l~~~~~~~~~ 354 (495)
..++ ..+..+++|+.|++++|. ++.++ ..+..+++|++|++++ .+..+|.. ..+++|++|++++|.. ...
T Consensus 348 ~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l-~~l 425 (549)
T 2z81_A 348 EEYLKNSACKGAWPSLQTLVLSQNH-LRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGI-RVV 425 (549)
T ss_dssp HHHHHHHTCTTSSTTCCEEECTTSC-CCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCC-SCC
T ss_pred cccccchhhhhccccCcEEEccCCc-ccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCc-ccc
Confidence 4442 345677899999999986 45443 3578899999999999 78777764 5678999999999973 211
Q ss_pred hhcccccCCCCCccceEEeeccccccccchhhhccccccCCCCCCCceeeecccccccccccccccCCCCCeEeccCCCC
Q 011033 355 MIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSSIVDLQNLTHLNLVDCPK 434 (495)
Q Consensus 355 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~ 434 (495)
+. .+ .++|+.|++++| .+..++. .+++|+.|++++ ++++.+|. ...+++|++|++++| .
T Consensus 426 -~~---~~--~~~L~~L~Ls~N--~l~~~~~----------~l~~L~~L~Ls~-N~l~~ip~-~~~l~~L~~L~Ls~N-~ 484 (549)
T 2z81_A 426 -KT---CI--PQTLEVLDVSNN--NLDSFSL----------FLPRLQELYISR-NKLKTLPD-ASLFPVLLVMKISRN-Q 484 (549)
T ss_dssp -CT---TS--CTTCSEEECCSS--CCSCCCC----------CCTTCCEEECCS-SCCSSCCC-GGGCTTCCEEECCSS-C
T ss_pred -cc---hh--cCCceEEECCCC--Chhhhcc----------cCChhcEEECCC-CccCcCCC-cccCccCCEEecCCC-c
Confidence 11 11 258999999998 6666542 457899999999 57888885 567899999999995 5
Q ss_pred CCCCCCC--CCccccceeeccCCch
Q 011033 435 LKYFPEK--GLPSSLLQLSIYRCPL 457 (495)
Q Consensus 435 l~~l~~~--~~~~~L~~L~l~~c~~ 457 (495)
++.++.. ..+++|++|++++|+.
T Consensus 485 l~~~~~~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 485 LKSVPDGIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp CCCCCTTGGGGCTTCCEEECCSSCB
T ss_pred cCCcCHHHHhcCcccCEEEecCCCc
Confidence 8777764 3378999999999873
No 21
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=2e-27 Score=245.04 Aligned_cols=402 Identities=15% Similarity=0.097 Sum_probs=230.4
Q ss_pred ccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCCCCCC
Q 011033 19 CSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALP 98 (495)
Q Consensus 19 ~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~ 98 (495)
++|++|++++ +.++.++++ .|.++ ++|++|++++|...+..|..+..+++|++|++++| .++.+|.. .+
T Consensus 52 ~~L~~L~Ls~-N~i~~~~~~----~~~~l----~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~-~l 120 (562)
T 3a79_B 52 PRTKALSLSQ-NSISELRMP----DISFL----SELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-RLQNISCC-PM 120 (562)
T ss_dssp TTCCEEECCS-SCCCCCCGG----GTTTC----TTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS-CCCEECSC-CC
T ss_pred CCcCEEECCC-CCccccChh----hhccC----CCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC-cCCccCcc-cc
Confidence 5677777777 456666543 46666 77777777776332333555677777777777776 56666655 67
Q ss_pred CCCcEEEEeCCCCCCcc--ccccccCCCCCccEEecccCccccccccccCCCCc--cEEEeccCCC--cccccccccccc
Q 011033 99 SKLKIIEIEGCDALKSL--PEAWMCDTNSSLETLYIEHCRTLTYLAGVQLPRSL--KRLDILSCDN--IRTLTVEEGIQS 172 (495)
Q Consensus 99 ~~L~~L~l~~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L--~~L~l~~~~~--l~~~~~~~~~~~ 172 (495)
++|++|++++|. +..+ |..+... ++|++|+++++ .++.. ....+++| +.|+++++.. .... +..+..
T Consensus 121 ~~L~~L~Ls~N~-l~~l~~p~~~~~l--~~L~~L~L~~n-~l~~~-~~~~l~~L~L~~L~L~~n~l~~~~~~--~~~l~~ 193 (562)
T 3a79_B 121 ASLRHLDLSFND-FDVLPVCKEFGNL--TKLTFLGLSAA-KFRQL-DLLPVAHLHLSCILLDLVSYHIKGGE--TESLQI 193 (562)
T ss_dssp TTCSEEECCSSC-CSBCCCCGGGGGC--TTCCEEEEECS-BCCTT-TTGGGTTSCEEEEEEEESSCCCCSSS--CCEEEE
T ss_pred ccCCEEECCCCC-ccccCchHhhccc--CcccEEecCCC-ccccC-chhhhhhceeeEEEeecccccccccC--cccccc
Confidence 777777777766 3333 3455544 66777777764 33321 11223344 7777666422 1111 111110
Q ss_pred CC----------CC-----ccCcccCccccceeeecCCC-----------------CCccc-ccCCCCcc-cccccccCC
Q 011033 173 SS----------SS-----SSNRRYTSSLLEKLEIRDCP-----------------SLTCI-FSQNELPA-TLESLEVGN 218 (495)
Q Consensus 173 ~~----------~~-----~~~~~~~~~~L~~L~l~~~~-----------------~l~~~-~~~~~~~~-~~~~~~~~~ 218 (495)
-. +. ........++++.+++++.. .++.+ +....+.+ .+.......
T Consensus 194 l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~ 273 (562)
T 3a79_B 194 PNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF 273 (562)
T ss_dssp CCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH
T ss_pred cCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhh
Confidence 00 00 00000012234444444321 00000 00000000 000000000
Q ss_pred CCCCccEEEeecCCCchhhhhhc-----CCCCCCcEEeeeCCCCCCccc-ccCC---CCCCccEEEeeCCCCccccCCCC
Q 011033 219 LPPSLKSLFVWYCPKLESIAERL-----DNNTSLETINISGCENLKILP-SGLH---NLGQLQEIEIWECENLVSFPEGG 289 (495)
Q Consensus 219 ~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~l~-~~~~---~l~~L~~L~l~~~~~l~~l~~~~ 289 (495)
..++|++|++++|...+.+|..+ ..++.|+.+++..+.. .+| .++. ...+|++|++++|. +.... ..
T Consensus 274 ~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~-~~~~~-~~ 349 (562)
T 3a79_B 274 WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTP-FIHMV-CP 349 (562)
T ss_dssp TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSC-CCCCC-CC
T ss_pred hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCC-ccccc-Cc
Confidence 01245555555444333444333 3333333333333211 222 1111 11457777777773 32222 12
Q ss_pred CCCCCCcEEEecCccccccccccccCCCCcceeEecc-ccccccC----CCCCCccceeEeeccCccchhhhcccccCCC
Q 011033 290 LPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSLEE----DGLPTNLHSLHIWGNMEIWKSMIERGRGFHR 364 (495)
Q Consensus 290 ~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 364 (495)
..+++|+.|++++|.....+|..+..+++|++|++++ .+..++. ...+++|++|++++|.. ...++. ..+..
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~--~~~~~ 426 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSL-NSHAYD--RTCAW 426 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCC-BSCCSS--CCCCC
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcC-CCccCh--hhhcC
Confidence 5678999999999986666788899999999999999 7766542 35678999999999984 332333 35788
Q ss_pred CCccceEEeeccccccccchhhhccccccCCCCCCCceeeecccccccccccccccCCCCCeEeccCCCCCCCCCCC--C
Q 011033 365 FSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSSIVDLQNLTHLNLVDCPKLKYFPEK--G 442 (495)
Q Consensus 365 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~--~ 442 (495)
+++|++|++++| .+....... .+++|+.|++++ +.++.+|..+..+++|++|++++ +.++.+|.. .
T Consensus 427 l~~L~~L~l~~n--~l~~~~~~~--------l~~~L~~L~L~~-N~l~~ip~~~~~l~~L~~L~L~~-N~l~~l~~~~~~ 494 (562)
T 3a79_B 427 AESILVLNLSSN--MLTGSVFRC--------LPPKVKVLDLHN-NRIMSIPKDVTHLQALQELNVAS-NQLKSVPDGVFD 494 (562)
T ss_dssp CTTCCEEECCSS--CCCGGGGSS--------CCTTCSEEECCS-SCCCCCCTTTTSSCCCSEEECCS-SCCCCCCTTSTT
T ss_pred cccCCEEECCCC--CCCcchhhh--------hcCcCCEEECCC-CcCcccChhhcCCCCCCEEECCC-CCCCCCCHHHHh
Confidence 899999999998 554322221 336999999999 58899998777999999999999 568899885 3
Q ss_pred CccccceeeccCCch
Q 011033 443 LPSSLLQLSIYRCPL 457 (495)
Q Consensus 443 ~~~~L~~L~l~~c~~ 457 (495)
.+++|++|++++||.
T Consensus 495 ~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 495 RLTSLQYIWLHDNPW 509 (562)
T ss_dssp TCTTCCCEECCSCCB
T ss_pred cCCCCCEEEecCCCc
Confidence 478999999999973
No 22
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=1.2e-26 Score=231.61 Aligned_cols=345 Identities=26% Similarity=0.281 Sum_probs=194.2
Q ss_pred ccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCc-------------cEEEE
Q 011033 17 DICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSL-------------REIEI 83 (495)
Q Consensus 17 ~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L-------------~~L~l 83 (495)
+...|++|++++ +.++.+|++ ++++ ++|++|++++|...+.+|..++++++| ++|++
T Consensus 9 ~~~~L~~L~l~~-n~l~~iP~~-----i~~L----~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l 78 (454)
T 1jl5_A 9 SNTFLQEPLRHS-SNLTEMPVE-----AENV----KSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELEL 78 (454)
T ss_dssp -----------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEEC
T ss_pred ccccchhhhccc-CchhhCChh-----Hhcc----cchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEe
Confidence 357899999999 567888775 8888 999999999987666888888888765 89999
Q ss_pred eCCCCCCCCCCCCCCCCCcEEEEeCCCCCCccccccccCCCCCccEEecccCccccccccccCCCCccEEEeccCCCccc
Q 011033 84 YKCSSLVSFPEVALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGVQLPRSLKRLDILSCDNIRT 163 (495)
Q Consensus 84 ~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~ 163 (495)
++| .++.+|. .+++|++|++++|. +..+|.. . ++|++|++++| .++.++. .+++|+.|+++++ .++.
T Consensus 79 ~~~-~l~~lp~--~~~~L~~L~l~~n~-l~~lp~~---~--~~L~~L~l~~n-~l~~l~~--~~~~L~~L~L~~n-~l~~ 145 (454)
T 1jl5_A 79 NNL-GLSSLPE--LPPHLESLVASCNS-LTELPEL---P--QSLKSLLVDNN-NLKALSD--LPPLLEYLGVSNN-QLEK 145 (454)
T ss_dssp TTS-CCSCCCS--CCTTCSEEECCSSC-CSSCCCC---C--TTCCEEECCSS-CCSCCCS--CCTTCCEEECCSS-CCSS
T ss_pred cCC-ccccCCC--CcCCCCEEEccCCc-CCccccc---c--CCCcEEECCCC-ccCcccC--CCCCCCEEECcCC-CCCC
Confidence 998 6777775 35789999999887 4557653 2 67889998885 4555553 2368888888885 4554
Q ss_pred cccccccccCCCCccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCC
Q 011033 164 LTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDN 243 (495)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 243 (495)
+ |+ + ...++++.|+++++ .++.+ + ..+++|++|++++|.... +| .+..
T Consensus 146 l--p~-~-----------~~l~~L~~L~l~~N-~l~~l-------------p--~~~~~L~~L~L~~n~l~~-l~-~~~~ 193 (454)
T 1jl5_A 146 L--PE-L-----------QNSSFLKIIDVDNN-SLKKL-------------P--DLPPSLEFIAAGNNQLEE-LP-ELQN 193 (454)
T ss_dssp C--CC-C-----------TTCTTCCEEECCSS-CCSCC-------------C--CCCTTCCEEECCSSCCSS-CC-CCTT
T ss_pred C--cc-c-----------CCCCCCCEEECCCC-cCccc-------------C--CCcccccEEECcCCcCCc-Cc-cccC
Confidence 4 42 2 12456888888774 44433 1 122578888888765443 44 4777
Q ss_pred CCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCccccccccccccCCCCcceeE
Q 011033 244 NTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLT 323 (495)
Q Consensus 244 ~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 323 (495)
+++|+.|++++|. +..+|... ++|++|++++| .++.+|. +..+++|+.|++++|. ++.+|.. +++|++|+
T Consensus 194 l~~L~~L~l~~N~-l~~l~~~~---~~L~~L~l~~n-~l~~lp~-~~~l~~L~~L~l~~N~-l~~l~~~---~~~L~~L~ 263 (454)
T 1jl5_A 194 LPFLTAIYADNNS-LKKLPDLP---LSLESIVAGNN-ILEELPE-LQNLPFLTTIYADNNL-LKTLPDL---PPSLEALN 263 (454)
T ss_dssp CTTCCEEECCSSC-CSSCCCCC---TTCCEEECCSS-CCSSCCC-CTTCTTCCEEECCSSC-CSSCCSC---CTTCCEEE
T ss_pred CCCCCEEECCCCc-CCcCCCCc---CcccEEECcCC-cCCcccc-cCCCCCCCEEECCCCc-CCccccc---ccccCEEE
Confidence 7888888887753 44444322 47777777777 4556663 5566777777777764 4445532 36677777
Q ss_pred ecc-ccccccCCCCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccCCCCCCCce
Q 011033 324 IGG-ELPSLEEDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTS 402 (495)
Q Consensus 324 l~~-~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 402 (495)
+++ .+..++. .+++|++|++++|.... ++. -.++|+.|++++| .+..++. .+++|+.
T Consensus 264 l~~N~l~~l~~--~~~~L~~L~ls~N~l~~--l~~------~~~~L~~L~l~~N--~l~~i~~----------~~~~L~~ 321 (454)
T 1jl5_A 264 VRDNYLTDLPE--LPQSLTFLDVSENIFSG--LSE------LPPNLYYLNASSN--EIRSLCD----------LPPSLEE 321 (454)
T ss_dssp CCSSCCSCCCC--CCTTCCEEECCSSCCSE--ESC------CCTTCCEEECCSS--CCSEECC----------CCTTCCE
T ss_pred CCCCcccccCc--ccCcCCEEECcCCccCc--ccC------cCCcCCEEECcCC--cCCcccC----------CcCcCCE
Confidence 776 5555543 24667777777665211 000 1135555555555 3333321 2234555
Q ss_pred eeecccccccccccccccCCCCCeEeccCCCCCCCCCCCCCccccceeeccCC
Q 011033 403 LRIVDFPNLERLSSSIVDLQNLTHLNLVDCPKLKYFPEKGLPSSLLQLSIYRC 455 (495)
Q Consensus 403 L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c 455 (495)
|++++ +.++.+|.. +++|++|++++| .++.+|. .+++|++|++++|
T Consensus 322 L~Ls~-N~l~~lp~~---~~~L~~L~L~~N-~l~~lp~--~l~~L~~L~L~~N 367 (454)
T 1jl5_A 322 LNVSN-NKLIELPAL---PPRLERLIASFN-HLAEVPE--LPQNLKQLHVEYN 367 (454)
T ss_dssp EECCS-SCCSCCCCC---CTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSS
T ss_pred EECCC-Ccccccccc---CCcCCEEECCCC-ccccccc--hhhhccEEECCCC
Confidence 55555 334444422 344555555542 3444444 3444555555544
No 23
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=2.5e-26 Score=231.16 Aligned_cols=329 Identities=16% Similarity=0.208 Sum_probs=255.1
Q ss_pred cccccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCC
Q 011033 14 LLQDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFP 93 (495)
Q Consensus 14 ~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~ 93 (495)
.+..+++|++|++++| .++.+++ +.++ ++|++|++++| .+..++. ++.+++|++|++++| .++.++
T Consensus 63 ~~~~l~~L~~L~Ls~n-~l~~~~~------~~~l----~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~ 128 (466)
T 1o6v_A 63 GVEYLNNLTQINFSNN-QLTDITP------LKNL----TKLVDILMNNN-QIADITP-LANLTNLTGLTLFNN-QITDID 128 (466)
T ss_dssp TGGGCTTCCEEECCSS-CCCCCGG------GTTC----TTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCCG
T ss_pred chhhhcCCCEEECCCC-ccCCchh------hhcc----ccCCEEECCCC-ccccChh-hcCCCCCCEEECCCC-CCCCCh
Confidence 4678999999999994 6877654 7777 99999999998 5566665 899999999999998 788887
Q ss_pred CCCCCCCCcEEEEeCCCCCCccccccccCCCCCccEEecccCccccccccccCCCCccEEEeccCCCccccccccccccC
Q 011033 94 EVALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQSS 173 (495)
Q Consensus 94 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 173 (495)
.+..+++|++|++++|. +..++. +... ++|+.|++.+ .+..++....+++|+.|+++++ .++.+ +. +
T Consensus 129 ~~~~l~~L~~L~l~~n~-l~~~~~-~~~l--~~L~~L~l~~--~~~~~~~~~~l~~L~~L~l~~n-~l~~~--~~-l--- 195 (466)
T 1o6v_A 129 PLKNLTNLNRLELSSNT-ISDISA-LSGL--TSLQQLSFGN--QVTDLKPLANLTTLERLDISSN-KVSDI--SV-L--- 195 (466)
T ss_dssp GGTTCTTCSEEEEEEEE-ECCCGG-GTTC--TTCSEEEEEE--SCCCCGGGTTCTTCCEEECCSS-CCCCC--GG-G---
T ss_pred HHcCCCCCCEEECCCCc-cCCChh-hccC--CcccEeecCC--cccCchhhccCCCCCEEECcCC-cCCCC--hh-h---
Confidence 79999999999999987 555554 4434 8999999964 4555666678899999999986 45444 21 1
Q ss_pred CCCccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeee
Q 011033 174 SSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINIS 253 (495)
Q Consensus 174 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 253 (495)
...++|+.|+++++ .++.. ......++|+.|++++|...+ + ..+..+++|+.|+++
T Consensus 196 --------~~l~~L~~L~l~~n-~l~~~-------------~~~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~ 251 (466)
T 1o6v_A 196 --------AKLTNLESLIATNN-QISDI-------------TPLGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLA 251 (466)
T ss_dssp --------GGCTTCSEEECCSS-CCCCC-------------GGGGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECC
T ss_pred --------ccCCCCCEEEecCC-ccccc-------------ccccccCCCCEEECCCCCccc-c-hhhhcCCCCCEEECC
Confidence 23567999999885 34333 112234889999999887554 3 347789999999999
Q ss_pred CCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCccccccccccccCCCCcceeEecc-cccccc
Q 011033 254 GCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSLE 332 (495)
Q Consensus 254 ~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~ 332 (495)
+|. +..++. +..+++|+.|++++| .+..++. +..+++|+.|++++|. ++.++. +..+++|+.|++++ .+..++
T Consensus 252 ~n~-l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~L~~n~l~~~~ 325 (466)
T 1o6v_A 252 NNQ-ISNLAP-LSGLTKLTELKLGAN-QISNISP-LAGLTALTNLELNENQ-LEDISP-ISNLKNLTYLTLYFNNISDIS 325 (466)
T ss_dssp SSC-CCCCGG-GTTCTTCSEEECCSS-CCCCCGG-GTTCTTCSEEECCSSC-CSCCGG-GGGCTTCSEEECCSSCCSCCG
T ss_pred CCc-cccchh-hhcCCCCCEEECCCC-ccCcccc-ccCCCccCeEEcCCCc-ccCchh-hcCCCCCCEEECcCCcCCCch
Confidence 965 444443 788999999999998 5565555 6678899999999986 555554 78999999999999 777776
Q ss_pred CCCCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccCCCCCCCceeeeccccccc
Q 011033 333 EDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLE 412 (495)
Q Consensus 333 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 412 (495)
+...+++|++|++++|.. ... . .+.++++|+.|++++| .+..++.- ..+++|+.|++++ +.+.
T Consensus 326 ~~~~l~~L~~L~l~~n~l-~~~--~---~l~~l~~L~~L~l~~n--~l~~~~~~--------~~l~~L~~L~l~~-n~~~ 388 (466)
T 1o6v_A 326 PVSSLTKLQRLFFYNNKV-SDV--S---SLANLTNINWLSAGHN--QISDLTPL--------ANLTRITQLGLND-QAWT 388 (466)
T ss_dssp GGGGCTTCCEEECCSSCC-CCC--G---GGTTCTTCCEEECCSS--CCCBCGGG--------TTCTTCCEEECCC-EEEE
T ss_pred hhccCccCCEeECCCCcc-CCc--h---hhccCCCCCEEeCCCC--ccCccchh--------hcCCCCCEEeccC-Cccc
Confidence 667789999999999973 322 2 4788999999999998 66555542 2567999999999 5666
Q ss_pred cccc
Q 011033 413 RLSS 416 (495)
Q Consensus 413 ~l~~ 416 (495)
.+|.
T Consensus 389 ~~p~ 392 (466)
T 1o6v_A 389 NAPV 392 (466)
T ss_dssp CCCB
T ss_pred CCch
Confidence 6664
No 24
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=1.9e-26 Score=223.12 Aligned_cols=300 Identities=15% Similarity=0.177 Sum_probs=147.5
Q ss_pred cccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCCCCCCCCCcEEEEeCCCCCCccccccccCCCCCccEEe
Q 011033 52 CRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLY 131 (495)
Q Consensus 52 ~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 131 (495)
++|+.|+++++ .+..++. +..+++|++|++++| .++.++.+..+++|++|++++|. +..++ .+... ++|++|+
T Consensus 44 ~~L~~L~l~~~-~i~~~~~-~~~~~~L~~L~l~~n-~i~~~~~~~~l~~L~~L~L~~n~-i~~~~-~~~~l--~~L~~L~ 116 (347)
T 4fmz_A 44 ESITKLVVAGE-KVASIQG-IEYLTNLEYLNLNGN-QITDISPLSNLVKLTNLYIGTNK-ITDIS-ALQNL--TNLRELY 116 (347)
T ss_dssp TTCSEEECCSS-CCCCCTT-GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCG-GGTTC--TTCSEEE
T ss_pred ccccEEEEeCC-ccccchh-hhhcCCccEEEccCC-ccccchhhhcCCcCCEEEccCCc-ccCch-HHcCC--CcCCEEE
Confidence 55555555554 3344443 455555555555555 44444445555555555555554 33333 22222 5555555
Q ss_pred cccCccccccccccCCCCccEEEeccCCCccccccccccccCCCCccCcccCccccceeeecCCCCCcccccCCCCcccc
Q 011033 132 IEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATL 211 (495)
Q Consensus 132 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 211 (495)
+++| .++.++....+++|+.|++++|.....+ +. + ...
T Consensus 117 l~~n-~i~~~~~~~~l~~L~~L~l~~n~~~~~~--~~-~-----------~~l--------------------------- 154 (347)
T 4fmz_A 117 LNED-NISDISPLANLTKMYSLNLGANHNLSDL--SP-L-----------SNM--------------------------- 154 (347)
T ss_dssp CTTS-CCCCCGGGTTCTTCCEEECTTCTTCCCC--GG-G-----------TTC---------------------------
T ss_pred CcCC-cccCchhhccCCceeEEECCCCCCcccc--cc-h-----------hhC---------------------------
Confidence 5553 2444444444555555555554333222 10 0 001
Q ss_pred cccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCC
Q 011033 212 ESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLP 291 (495)
Q Consensus 212 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~ 291 (495)
++|+.|++++|......+ +..+++|++|++++| .+..++. +..+++|+.|++++| .+..++. +..
T Consensus 155 ---------~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~ 219 (347)
T 4fmz_A 155 ---------TGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN-QIEDISP-LASLTSLHYFTAYVN-QITDITP-VAN 219 (347)
T ss_dssp ---------TTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTS-CCCCCGG-GGGCTTCCEEECCSS-CCCCCGG-GGG
T ss_pred ---------CCCcEEEecCCCcCCchh--hccCCCCCEEEccCC-ccccccc-ccCCCccceeecccC-CCCCCch-hhc
Confidence 233333333332221111 334444444544443 2222322 344455555555544 2222222 334
Q ss_pred CCCCcEEEecCccccccccccccCCCCcceeEecc-ccccccCCCCCCccceeEeeccCccchhhhcccccCCCCCccce
Q 011033 292 CAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSLEEDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRH 370 (495)
Q Consensus 292 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~ 370 (495)
+++|+.|++++|. ++.++. +..+++|++|++++ .+..++....+++|++|++++|.. ... . .+..+++|+.
T Consensus 220 ~~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l-~~~--~---~~~~l~~L~~ 291 (347)
T 4fmz_A 220 MTRLNSLKIGNNK-ITDLSP-LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQI-SDI--S---VLNNLSQLNS 291 (347)
T ss_dssp CTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCC-CCC--G---GGGGCTTCSE
T ss_pred CCcCCEEEccCCc-cCCCcc-hhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCcc-CCC--h---hhcCCCCCCE
Confidence 4455555555543 333332 45555555555555 444444344556666666666642 211 1 3566777777
Q ss_pred EEeeccccccccchhhhccccccCCCCCCCceeeecccccccccccccccCCCCCeEeccCCC
Q 011033 371 LTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSSIVDLQNLTHLNLVDCP 433 (495)
Q Consensus 371 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~ 433 (495)
|++++| .+....... +..+++|+.|++++| .++.++. +..+++|++|++++|+
T Consensus 292 L~L~~n--~l~~~~~~~------l~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 292 LFLNNN--QLGNEDMEV------IGGLTNLTTLFLSQN-HITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp EECCSS--CCCGGGHHH------HHTCTTCSEEECCSS-SCCCCGG-GGGCTTCSEESSSCC-
T ss_pred EECcCC--cCCCcChhH------hhccccCCEEEccCC-ccccccC-hhhhhccceeehhhhc
Confidence 888777 444433321 123567888888884 4666653 7788889999888865
No 25
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=2.5e-27 Score=242.22 Aligned_cols=377 Identities=15% Similarity=0.096 Sum_probs=253.7
Q ss_pred CccccccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCC
Q 011033 12 NELLQDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVS 91 (495)
Q Consensus 12 ~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~ 91 (495)
...|.++++|++|++++ +.++.+.++ .|+++ ++|++|++++| .+..+|.. .+++|++|++++| .++.
T Consensus 38 ~~~~~~l~~L~~L~Ls~-n~l~~~~~~----~~~~l----~~L~~L~Ls~N-~l~~lp~~--~l~~L~~L~L~~N-~l~~ 104 (520)
T 2z7x_B 38 TSDILSLSKLRILIISH-NRIQYLDIS----VFKFN----QELEYLDLSHN-KLVKISCH--PTVNLKHLDLSFN-AFDA 104 (520)
T ss_dssp HHHHTTCTTCCEEECCS-SCCCEEEGG----GGTTC----TTCCEEECCSS-CCCEEECC--CCCCCSEEECCSS-CCSS
T ss_pred hhhccccccccEEecCC-CccCCcChH----Hhhcc----cCCCEEecCCC-ceeecCcc--ccCCccEEeccCC-cccc
Confidence 35678899999999999 578887654 58888 99999999998 56788875 8999999999998 5554
Q ss_pred --CCC-CCCCCCCcEEEEeCCCCCCccccccccCCCCCc--cEEecccCcc--ccccccc--------------------
Q 011033 92 --FPE-VALPSKLKIIEIEGCDALKSLPEAWMCDTNSSL--ETLYIEHCRT--LTYLAGV-------------------- 144 (495)
Q Consensus 92 --l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--l~~~~~~-------------------- 144 (495)
+|. ++.+++|++|++++|.... ..+... ++| +.|++++|.. ....+..
T Consensus 105 ~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l--~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~ 179 (520)
T 2z7x_B 105 LPICKEFGNMSQLKFLGLSTTHLEK---SSVLPI--AHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFH 179 (520)
T ss_dssp CCCCGGGGGCTTCCEEEEEESSCCG---GGGGGG--TTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCC
T ss_pred ccchhhhccCCcceEEEecCcccch---hhcccc--ccceeeEEEeecccccccccccccccccccceEEEEeccCcchh
Confidence 443 8899999999999987433 233333 566 9999988643 1111111
Q ss_pred -------cCCCCccEEEeccCCCccccc-ccc---ccccCCCCc----------------cCcccCccccceeeecCCCC
Q 011033 145 -------QLPRSLKRLDILSCDNIRTLT-VEE---GIQSSSSSS----------------SNRRYTSSLLEKLEIRDCPS 197 (495)
Q Consensus 145 -------~~~~~L~~L~l~~~~~l~~~~-~~~---~~~~~~~~~----------------~~~~~~~~~L~~L~l~~~~~ 197 (495)
..+++|+.++++++....... +.+ .+..-..-. .......++++.|+++++.
T Consensus 180 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~- 258 (520)
T 2z7x_B 180 FILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVK- 258 (520)
T ss_dssp CCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEE-
T ss_pred hhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeeccc-
Confidence 124555666655542000000 000 000000000 0000001245555555531
Q ss_pred CcccccCCCCcccccccccCCCCCCccEEEeecCCCchhhh-hhcCCC---CCCcEEeeeCCCCCCcccccCCCCCCccE
Q 011033 198 LTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIA-ERLDNN---TSLETINISGCENLKILPSGLHNLGQLQE 273 (495)
Q Consensus 198 l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~---~~L~~L~l~~~~~~~~l~~~~~~l~~L~~ 273 (495)
++ +.+|..+...... -.+.|+.++++++.. .+| .++..+ .+|+.|++++|.. ...+ ....+++|++
T Consensus 259 l~-----~~~p~~~~~~~~~-~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l-~~~~-~~~~l~~L~~ 328 (520)
T 2z7x_B 259 LQ-----GQLDFRDFDYSGT-SLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRM-VHML-CPSKISPFLH 328 (520)
T ss_dssp EE-----SCCCCCCCCCCSC-CCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCC-CCCC-CCSSCCCCCE
T ss_pred cc-----Cccccchhhcccc-cCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcc-cccc-chhhCCcccE
Confidence 11 1112111000002 237799999998776 444 333333 6799999999653 3332 1267899999
Q ss_pred EEeeCCCCccccCCCCCCCCCCcEEEecCccccc--cccccccCCCCcceeEecc-cccc-ccCC--CCCCccceeEeec
Q 011033 274 IEIWECENLVSFPEGGLPCAKLSKLRIYGCERLE--ALPKGLHNLTSLQQLTIGG-ELPS-LEED--GLPTNLHSLHIWG 347 (495)
Q Consensus 274 L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~-~l~~-~~~~--~~~~~L~~L~l~~ 347 (495)
|++++|..-..++..+..+++|+.|++++|.... .+|..+..+++|++|++++ .+.. ++.. ..+++|++|++++
T Consensus 329 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~ 408 (520)
T 2z7x_B 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS 408 (520)
T ss_dssp EECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCS
T ss_pred EEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcC
Confidence 9999995544577778889999999999997543 4556789999999999999 7776 6653 5578999999999
Q ss_pred cCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccCCCCCCCceeeecccccccccccc-cccCCCCCe
Q 011033 348 NMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSS-IVDLQNLTH 426 (495)
Q Consensus 348 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~ 426 (495)
|.... ..+. .+. ++|+.|++++| .+..++... ..+++|+.|++++ +.++.+|.. +..+++|++
T Consensus 409 N~l~~-~~~~---~l~--~~L~~L~Ls~N--~l~~ip~~~-------~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~ 472 (520)
T 2z7x_B 409 NILTD-TIFR---CLP--PRIKVLDLHSN--KIKSIPKQV-------VKLEALQELNVAS-NQLKSVPDGIFDRLTSLQK 472 (520)
T ss_dssp SCCCG-GGGG---SCC--TTCCEEECCSS--CCCCCCGGG-------GGCTTCCEEECCS-SCCCCCCTTTTTTCTTCCE
T ss_pred CCCCc-chhh---hhc--ccCCEEECCCC--cccccchhh-------hcCCCCCEEECCC-CcCCccCHHHhccCCcccE
Confidence 98433 3333 222 79999999999 777887755 2567999999999 688899985 889999999
Q ss_pred EeccCCC
Q 011033 427 LNLVDCP 433 (495)
Q Consensus 427 L~l~~c~ 433 (495)
|++++|+
T Consensus 473 L~l~~N~ 479 (520)
T 2z7x_B 473 IWLHTNP 479 (520)
T ss_dssp EECCSSC
T ss_pred EECcCCC
Confidence 9999976
No 26
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=1.3e-25 Score=217.29 Aligned_cols=305 Identities=17% Similarity=0.178 Sum_probs=238.9
Q ss_pred ccCCCCccEEEEeCCCCCCCCCCCCCCCCCcEEEEeCCCCCCccccccccCCCCCccEEecccCccccccccccCCCCcc
Q 011033 72 SLSLSSLREIEIYKCSSLVSFPEVALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGVQLPRSLK 151 (495)
Q Consensus 72 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~ 151 (495)
+..+++|++|++++| .+..++.+..+++|++|++++|. +..++. +... ++|++|++++| .++.++....+++|+
T Consensus 40 ~~~l~~L~~L~l~~~-~i~~~~~~~~~~~L~~L~l~~n~-i~~~~~-~~~l--~~L~~L~L~~n-~i~~~~~~~~l~~L~ 113 (347)
T 4fmz_A 40 QEELESITKLVVAGE-KVASIQGIEYLTNLEYLNLNGNQ-ITDISP-LSNL--VKLTNLYIGTN-KITDISALQNLTNLR 113 (347)
T ss_dssp HHHHTTCSEEECCSS-CCCCCTTGGGCTTCCEEECCSSC-CCCCGG-GTTC--TTCCEEECCSS-CCCCCGGGTTCTTCS
T ss_pred chhcccccEEEEeCC-ccccchhhhhcCCccEEEccCCc-cccchh-hhcC--CcCCEEEccCC-cccCchHHcCCCcCC
Confidence 567899999999997 78888888999999999999987 666666 4444 99999999996 677777777888999
Q ss_pred EEEeccCCCccccccccccccCCCCccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecC
Q 011033 152 RLDILSCDNIRTLTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYC 231 (495)
Q Consensus 152 ~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 231 (495)
.|+++++ .+..+ +. + . ..++|+.|++++|
T Consensus 114 ~L~l~~n-~i~~~--~~-~----------------------------~-------------------~l~~L~~L~l~~n 142 (347)
T 4fmz_A 114 ELYLNED-NISDI--SP-L----------------------------A-------------------NLTKMYSLNLGAN 142 (347)
T ss_dssp EEECTTS-CCCCC--GG-G----------------------------T-------------------TCTTCCEEECTTC
T ss_pred EEECcCC-cccCc--hh-h----------------------------c-------------------cCCceeEEECCCC
Confidence 9999885 34332 11 0 0 1156777787777
Q ss_pred CCchhhhhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCccccccccc
Q 011033 232 PKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPK 311 (495)
Q Consensus 232 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 311 (495)
.....++. +..+++|+.|++++|. +..++. +..+++|++|++++| .+..++. +..+++|+.+++++|. +..++.
T Consensus 143 ~~~~~~~~-~~~l~~L~~L~l~~~~-~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~ 216 (347)
T 4fmz_A 143 HNLSDLSP-LSNMTGLNYLTVTESK-VKDVTP-IANLTDLYSLSLNYN-QIEDISP-LASLTSLHYFTAYVNQ-ITDITP 216 (347)
T ss_dssp TTCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEEECTTS-CCCCCGG-GGGCTTCCEEECCSSC-CCCCGG
T ss_pred CCcccccc-hhhCCCCcEEEecCCC-cCCchh-hccCCCCCEEEccCC-ccccccc-ccCCCccceeecccCC-CCCCch
Confidence 66665554 7899999999999964 444543 788999999999998 5666555 6677899999999985 555543
Q ss_pred cccCCCCcceeEecc-ccccccCCCCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccc
Q 011033 312 GLHNLTSLQQLTIGG-ELPSLEEDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRL 390 (495)
Q Consensus 312 ~l~~l~~L~~L~l~~-~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 390 (495)
+..+++|++|++++ .+..++....+++|++|++++|.... . . .+..+++|++|++++| .+..++.-.
T Consensus 217 -~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~-~--~---~~~~l~~L~~L~l~~n--~l~~~~~~~--- 284 (347)
T 4fmz_A 217 -VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISD-I--N---AVKDLTKLKMLNVGSN--QISDISVLN--- 284 (347)
T ss_dssp -GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-C--G---GGTTCTTCCEEECCSS--CCCCCGGGG---
T ss_pred -hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCC-C--h---hHhcCCCcCEEEccCC--ccCCChhhc---
Confidence 88899999999999 88887777788999999999997332 2 2 4788999999999998 777765432
Q ss_pred cccCCCCCCCceeeecccccccccccccccCCCCCeEeccCCCCCCCCCCCCCccccceeeccCCch
Q 011033 391 GTALPLPASLTSLRIVDFPNLERLSSSIVDLQNLTHLNLVDCPKLKYFPEKGLPSSLLQLSIYRCPL 457 (495)
Q Consensus 391 ~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~ 457 (495)
.+++|+.|++++|.-....+..+..+++|++|++++|+ ++.++....+++|++|++++|+.
T Consensus 285 -----~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 285 -----NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRPLASLSKMDSADFANQVI 345 (347)
T ss_dssp -----GCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCCGGGGGCTTCSEESSSCC--
T ss_pred -----CCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-cccccChhhhhccceeehhhhcc
Confidence 56799999999965444455578899999999999976 77776655689999999999973
No 27
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=2e-25 Score=223.00 Aligned_cols=224 Identities=19% Similarity=0.185 Sum_probs=114.3
Q ss_pred ccccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCC
Q 011033 15 LQDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE 94 (495)
Q Consensus 15 ~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~ 94 (495)
++.+++|++|++++ +.++.++ + +..+ ++|++|++++| .+..+| ++.+++|++|++++| .++.++
T Consensus 38 ~~~l~~L~~L~Ls~-n~l~~~~-~-----l~~l----~~L~~L~Ls~n-~l~~~~--~~~l~~L~~L~Ls~N-~l~~~~- 101 (457)
T 3bz5_A 38 EEQLATLTSLDCHN-SSITDMT-G-----IEKL----TGLTKLICTSN-NITTLD--LSQNTNLTYLACDSN-KLTNLD- 101 (457)
T ss_dssp HHHHTTCCEEECCS-SCCCCCT-T-----GGGC----TTCSEEECCSS-CCSCCC--CTTCTTCSEEECCSS-CCSCCC-
T ss_pred hhHcCCCCEEEccC-CCcccCh-h-----hccc----CCCCEEEccCC-cCCeEc--cccCCCCCEEECcCC-CCceee-
Confidence 44566666666666 3455543 2 5555 66666666665 344443 556666666666665 455444
Q ss_pred CCCCCCCcEEEEeCCCCCCccccccccCCCCCccEEecccCccccccccccCCCCccEEEeccCCCccccccccccccCC
Q 011033 95 VALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQSSS 174 (495)
Q Consensus 95 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 174 (495)
++.+++|++|++++|. +..++ +... ++|++|++++| .++.++ ...+++|+.|+++++..+..+
T Consensus 102 ~~~l~~L~~L~L~~N~-l~~l~--~~~l--~~L~~L~l~~N-~l~~l~-l~~l~~L~~L~l~~n~~~~~~---------- 164 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTNK-LTKLD--VSQN--PLLTYLNCARN-TLTEID-VSHNTQLTELDCHLNKKITKL---------- 164 (457)
T ss_dssp CTTCTTCCEEECCSSC-CSCCC--CTTC--TTCCEEECTTS-CCSCCC-CTTCTTCCEEECTTCSCCCCC----------
T ss_pred cCCCCcCCEEECCCCc-CCeec--CCCC--CcCCEEECCCC-ccceec-cccCCcCCEEECCCCCccccc----------
Confidence 5566666666666655 33343 2222 55666666653 343332 334455555555554333222
Q ss_pred CCccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeC
Q 011033 175 SSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISG 254 (495)
Q Consensus 175 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 254 (495)
+...+ ++|+.|++++|.... +| +..+++|+.|++++
T Consensus 165 ----------------------------------------~~~~l-~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~ 200 (457)
T 3bz5_A 165 ----------------------------------------DVTPQ-TQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDT 200 (457)
T ss_dssp ----------------------------------------CCTTC-TTCCEEECCSSCCCC-CC--CTTCTTCCEEECCS
T ss_pred ----------------------------------------ccccC-CcCCEEECCCCccce-ec--cccCCCCCEEECcC
Confidence 11111 445555555443322 22 44555666666655
Q ss_pred CCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCccccccccccccCCCCcceeEe
Q 011033 255 CENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTI 324 (495)
Q Consensus 255 ~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 324 (495)
|. +..+ .+..+++|+.|++++| .++.+| +..+++|+.|++++|. ++.+| ...+++|+.|++
T Consensus 201 N~-l~~~--~l~~l~~L~~L~Ls~N-~l~~ip--~~~l~~L~~L~l~~N~-l~~~~--~~~l~~L~~L~l 261 (457)
T 3bz5_A 201 NN-ITKL--DLNQNIQLTFLDCSSN-KLTEID--VTPLTQLTYFDCSVNP-LTELD--VSTLSKLTTLHC 261 (457)
T ss_dssp SC-CSCC--CCTTCTTCSEEECCSS-CCSCCC--CTTCTTCSEEECCSSC-CSCCC--CTTCTTCCEEEC
T ss_pred Cc-CCee--ccccCCCCCEEECcCC-cccccC--ccccCCCCEEEeeCCc-CCCcC--HHHCCCCCEEec
Confidence 32 3333 2455566666666665 344444 4445566666666654 33332 334445555444
No 28
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.94 E-value=2.5e-25 Score=233.08 Aligned_cols=220 Identities=17% Similarity=0.102 Sum_probs=157.4
Q ss_pred CCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCC--cccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEE
Q 011033 221 PSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLK--ILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKL 298 (495)
Q Consensus 221 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L 298 (495)
+.++.+.+..+..... .....+++|+.++++++.... ..+.....+.+|+.+++..+ .....+..+..+++|+.+
T Consensus 349 ~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~-~~~~~~~~~~~l~~L~~l 425 (635)
T 4g8a_A 349 KSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFN-GVITMSSNFLGLEQLEHL 425 (635)
T ss_dssp TTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSC-SEEEECSCCTTCTTCCEE
T ss_pred hhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhcccc-ccccccccccccccccch
Confidence 3455555554433221 123356777888777753321 22334456677888888776 455556667778899999
Q ss_pred EecCcccccccc-ccccCCCCcceeEecc-ccccccCC--CCCCccceeEeeccCccchhhhcccccCCCCCccceEEee
Q 011033 299 RIYGCERLEALP-KGLHNLTSLQQLTIGG-ELPSLEED--GLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIE 374 (495)
Q Consensus 299 ~l~~~~~~~~~~-~~l~~l~~L~~L~l~~-~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 374 (495)
++.++......+ ..+..+++++.++++. .+...... ..+++|++|++++|.......+. .+..+++|+.|+++
T Consensus 426 ~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~---~~~~l~~L~~L~Ls 502 (635)
T 4g8a_A 426 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD---IFTELRNLTFLDLS 502 (635)
T ss_dssp ECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS---CCTTCTTCCEEECT
T ss_pred hhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCch---hhhhccccCEEECC
Confidence 998876555443 3577889999999988 55555443 45789999999999866544444 78899999999999
Q ss_pred ccccccccchhhhccccccCCCCCCCceeeeccccccccccc-ccccCCCCCeEeccCCCCCCCCCCCCC---cccccee
Q 011033 375 GCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSS-SIVDLQNLTHLNLVDCPKLKYFPEKGL---PSSLLQL 450 (495)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~---~~~L~~L 450 (495)
+| .+..++... +..+++|++|+|++ ++++.++. .+..+++|++|++++ ++++.++...+ +++|++|
T Consensus 503 ~N--~L~~l~~~~------f~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~l~~l~~~L~~L 572 (635)
T 4g8a_A 503 QC--QLEQLSPTA------FNSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSL-NHIMTSKKQELQHFPSSLAFL 572 (635)
T ss_dssp TS--CCCEECTTT------TTTCTTCCEEECTT-SCCCBCCCGGGTTCTTCCEEECTT-SCCCBCCSSCTTCCCTTCCEE
T ss_pred CC--ccCCcChHH------HcCCCCCCEEECCC-CcCCCCChhHHhCCCCCCEEECCC-CcCCCCCHHHHHhhhCcCCEE
Confidence 98 777775532 34578999999999 67888765 688999999999999 55888766433 4789999
Q ss_pred eccCCc
Q 011033 451 SIYRCP 456 (495)
Q Consensus 451 ~l~~c~ 456 (495)
++++||
T Consensus 573 ~L~~Np 578 (635)
T 4g8a_A 573 NLTQND 578 (635)
T ss_dssp ECTTCC
T ss_pred EeeCCC
Confidence 999876
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=1.4e-25 Score=225.35 Aligned_cols=362 Identities=16% Similarity=0.174 Sum_probs=198.4
Q ss_pred ccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccc-cccccCCCCccEEEEeCCCCCCCC-CC-C
Q 011033 19 CSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKL-PQSSLSLSSLREIEIYKCSSLVSF-PE-V 95 (495)
Q Consensus 19 ~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l-~~~~~~l~~L~~L~l~~~~~l~~l-~~-~ 95 (495)
++|++|++++ +.++.+.+. .|.++ ++|++|++++|.....+ +..+..+++|++|++++| .+..+ |. +
T Consensus 30 ~~l~~L~Ls~-n~i~~~~~~----~~~~l----~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~ 99 (455)
T 3v47_A 30 AHVNYVDLSL-NSIAELNET----SFSRL----QDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN-QFLQLETGAF 99 (455)
T ss_dssp TTCCEEECCS-SCCCEECTT----TTSSC----TTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC-TTCEECTTTT
T ss_pred CccCEEEecC-CccCcCChh----HhccC----ccccEEECcCCcccceECcccccccccCCEEeCCCC-ccCccChhhc
Confidence 5688888888 467766443 46777 88888888887554455 345778888888888887 45444 33 7
Q ss_pred CCCCCCcEEEEeCCCCCCccccc--cccCCCCCccEEecccCcccccc-cc--ccCCCCccEEEeccCCCcccccccccc
Q 011033 96 ALPSKLKIIEIEGCDALKSLPEA--WMCDTNSSLETLYIEHCRTLTYL-AG--VQLPRSLKRLDILSCDNIRTLTVEEGI 170 (495)
Q Consensus 96 ~~~~~L~~L~l~~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~l~~~-~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~ 170 (495)
+.+++|++|++++|...+..+.. +... ++|++|++++|. ++.+ +. ...+++|+.|+++++ .+.... +..+
T Consensus 100 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l--~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~-~~~l 174 (455)
T 3v47_A 100 NGLANLEVLTLTQCNLDGAVLSGNFFKPL--TSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFN-KVKSIC-EEDL 174 (455)
T ss_dssp TTCTTCCEEECTTSCCBTHHHHSSTTTTC--TTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTC-CBSCCC-TTTS
T ss_pred cCcccCCEEeCCCCCCCccccCcccccCc--ccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCC-cccccC-hhhh
Confidence 77888888888887743333333 3333 778888888754 4443 33 246778888888775 333220 1111
Q ss_pred ccCCCCccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCC---CCCC
Q 011033 171 QSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDN---NTSL 247 (495)
Q Consensus 171 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~L 247 (495)
......+++.++++++ .+..+- ..... ........-.++|+.|++++|......+..+.. .++|
T Consensus 175 ---------~~l~~~~L~~L~l~~n-~l~~~~-~~~~~--~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L 241 (455)
T 3v47_A 175 ---------LNFQGKHFTLLRLSSI-TLQDMN-EYWLG--WEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKI 241 (455)
T ss_dssp ---------GGGTTCEEEEEECTTC-BCTTCS-TTCTT--HHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCE
T ss_pred ---------hccccccccccccccC-cccccc-hhhcc--ccccccccccceeeeEecCCCcccccchhhhhccccccce
Confidence 1112235666666663 222220 00000 000000001145777777776666655554432 3666
Q ss_pred cEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCccccccccccccCCCCcceeEecc-
Q 011033 248 ETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG- 326 (495)
Q Consensus 248 ~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~- 326 (495)
+.|++++|....... ....++.+ .........+++|+.|++++|......|..+..+++|++|++++
T Consensus 242 ~~L~l~~~~~~~~~~-~~~~~~~~-----------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 309 (455)
T 3v47_A 242 QSLILSNSYNMGSSF-GHTNFKDP-----------DNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQN 309 (455)
T ss_dssp EEEECTTCTTTSCCT-TCCSSCCC-----------CTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTS
T ss_pred eeEeecccccccccc-chhhhccC-----------cccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCC
Confidence 667666653322110 00000000 00000011224666666666654444555666666666666666
Q ss_pred ccccccCC--CCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccCCCCCCCceee
Q 011033 327 ELPSLEED--GLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLR 404 (495)
Q Consensus 327 ~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 404 (495)
.+..+++. ..+++|++|++++|.. ....+. .+.++++|++|++++| .+..+.... +..+++|+.|+
T Consensus 310 ~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~---~~~~l~~L~~L~Ls~N--~l~~~~~~~------~~~l~~L~~L~ 377 (455)
T 3v47_A 310 EINKIDDNAFWGLTHLLKLNLSQNFL-GSIDSR---MFENLDKLEVLDLSYN--HIRALGDQS------FLGLPNLKELA 377 (455)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCC-CEECGG---GGTTCTTCCEEECCSS--CCCEECTTT------TTTCTTCCEEE
T ss_pred cccccChhHhcCcccCCEEECCCCcc-CCcChh---HhcCcccCCEEECCCC--cccccChhh------ccccccccEEE
Confidence 55444332 3345666666666652 222222 4667777777777777 555443211 23456777777
Q ss_pred eccccccccccc-ccccCCCCCeEeccCCC
Q 011033 405 IVDFPNLERLSS-SIVDLQNLTHLNLVDCP 433 (495)
Q Consensus 405 l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~ 433 (495)
+++ +.++.+|. .+..+++|++|++++|+
T Consensus 378 L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 378 LDT-NQLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp CCS-SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCC-CccccCCHhHhccCCcccEEEccCCC
Confidence 777 56666665 45677778888887765
No 30
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=1.9e-25 Score=224.37 Aligned_cols=367 Identities=15% Similarity=0.090 Sum_probs=226.0
Q ss_pred ccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCC--CCCC
Q 011033 21 LRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE--VALP 98 (495)
Q Consensus 21 L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~--~~~~ 98 (495)
-+.++.++ .+++.+|.- +++|++|++++|......|..++.+++|++|++++|.....++. +..+
T Consensus 12 ~~~~~c~~-~~l~~lp~l------------~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l 78 (455)
T 3v47_A 12 GYNAICIN-RGLHQVPEL------------PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGL 78 (455)
T ss_dssp TTEEECCS-SCCSSCCCC------------CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTC
T ss_pred ccccCcCC-CCcccCCCC------------CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECccccccc
Confidence 34566666 467766541 27899999999855444477799999999999999854446544 8889
Q ss_pred CCCcEEEEeCCCCCCccccccccCCCCCccEEecccCccccc-ccc---ccCCCCccEEEeccCCCccccccccccccCC
Q 011033 99 SKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTY-LAG---VQLPRSLKRLDILSCDNIRTLTVEEGIQSSS 174 (495)
Q Consensus 99 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-~~~---~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 174 (495)
++|++|++++|......|..+... ++|++|++++|. ++. ++. ...+++|+.|+++++ .+..+. +..+
T Consensus 79 ~~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~---- 149 (455)
T 3v47_A 79 SSLIILKLDYNQFLQLETGAFNGL--ANLEVLTLTQCN-LDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQ-PASF---- 149 (455)
T ss_dssp TTCCEEECTTCTTCEECTTTTTTC--TTCCEEECTTSC-CBTHHHHSSTTTTCTTCCEEECCSS-BCCSCC-CCGG----
T ss_pred ccCCEEeCCCCccCccChhhccCc--ccCCEEeCCCCC-CCccccCcccccCcccCCEEECCCC-ccCccC-cccc----
Confidence 999999999988555556677655 899999999964 443 222 356788999998885 343320 1110
Q ss_pred CCccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCC-CCCccEEEeecCCCchhhhhhcCCCCCCcEEeee
Q 011033 175 SSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNL-PPSLKSLFVWYCPKLESIAERLDNNTSLETINIS 253 (495)
Q Consensus 175 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 253 (495)
...+++|+.|+++++ .++... +..+ ..+ .+.++.++++++......+.++..
T Consensus 150 ------~~~l~~L~~L~L~~n-~l~~~~-----~~~l-----~~l~~~~L~~L~l~~n~l~~~~~~~~~~---------- 202 (455)
T 3v47_A 150 ------FLNMRRFHVLDLTFN-KVKSIC-----EEDL-----LNFQGKHFTLLRLSSITLQDMNEYWLGW---------- 202 (455)
T ss_dssp ------GGGCTTCCEEECTTC-CBSCCC-----TTTS-----GGGTTCEEEEEECTTCBCTTCSTTCTTH----------
T ss_pred ------cCCCCcccEEeCCCC-cccccC-----hhhh-----hccccccccccccccCcccccchhhccc----------
Confidence 012344556665552 222210 0000 000 034455555544332211111000
Q ss_pred CCCCCCcccccCCCCCCccEEEeeCCCCccccCCCC---CCCCCCcEEEecCccccccc----------ccccc--CCCC
Q 011033 254 GCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGG---LPCAKLSKLRIYGCERLEAL----------PKGLH--NLTS 318 (495)
Q Consensus 254 ~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~---~~~~~L~~L~l~~~~~~~~~----------~~~l~--~l~~ 318 (495)
.....+..+++|++|++++|......+..+ ...++|+.|++++|...... +..+. ..++
T Consensus 203 ------~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (455)
T 3v47_A 203 ------EKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASG 276 (455)
T ss_dssp ------HHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSC
T ss_pred ------cccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccC
Confidence 000012233455555555543222222111 11134555555544222110 01111 2478
Q ss_pred cceeEecc-ccccccCC--CCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccCC
Q 011033 319 LQQLTIGG-ELPSLEED--GLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALP 395 (495)
Q Consensus 319 L~~L~l~~-~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 395 (495)
|++|++++ .+..+.+. ..+++|++|++++|.. ....+. .+.++++|++|++++| .+..++... +.
T Consensus 277 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~---~~~~l~~L~~L~Ls~N--~l~~~~~~~------~~ 344 (455)
T 3v47_A 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEI-NKIDDN---AFWGLTHLLKLNLSQN--FLGSIDSRM------FE 344 (455)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCC-CEECTT---TTTTCTTCCEEECCSS--CCCEECGGG------GT
T ss_pred ceEEEecCccccccchhhcccCCCCCEEECCCCcc-cccChh---HhcCcccCCEEECCCC--ccCCcChhH------hc
Confidence 99999999 76665443 5678999999999983 333333 6889999999999998 666664422 23
Q ss_pred CCCCCceeeeccccccccc-ccccccCCCCCeEeccCCCCCCCCCCCC--CccccceeeccCCc
Q 011033 396 LPASLTSLRIVDFPNLERL-SSSIVDLQNLTHLNLVDCPKLKYFPEKG--LPSSLLQLSIYRCP 456 (495)
Q Consensus 396 ~~~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~l~~~~--~~~~L~~L~l~~c~ 456 (495)
.+++|++|+++++ .++.+ |..+..+++|++|++++ +.++.++... .+++|++|++++|+
T Consensus 345 ~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 345 NLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp TCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CcccCCEEECCCC-cccccChhhccccccccEEECCC-CccccCCHhHhccCCcccEEEccCCC
Confidence 5689999999994 66666 66899999999999999 5688888753 47999999999985
No 31
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.94 E-value=7.7e-25 Score=218.64 Aligned_cols=354 Identities=25% Similarity=0.253 Sum_probs=228.1
Q ss_pred CccccccccccEEecccccccccccchhhHHHHhhhhh---------cccccceeecccccCCccccccccCCCCccEEE
Q 011033 12 NELLQDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCE---------LSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIE 82 (495)
Q Consensus 12 ~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~---------~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~ 82 (495)
+..++++++|++|++++|.-...+|.+ ++.+.. ...++++|++++| .+..+|.. .++|++|+
T Consensus 27 P~~i~~L~~L~~L~l~~n~~~~~~p~~-----~~~l~~L~~l~l~~c~~~~l~~L~l~~~-~l~~lp~~---~~~L~~L~ 97 (454)
T 1jl5_A 27 PVEAENVKSKTEYYNAWSEWERNAPPG-----NGEQREMAVSRLRDCLDRQAHELELNNL-GLSSLPEL---PPHLESLV 97 (454)
T ss_dssp -------CCHHHHHHHHHHHHHTSCTT-----SCCCHHHHHHHHHHHHHHTCSEEECTTS-CCSCCCSC---CTTCSEEE
T ss_pred ChhHhcccchhhhhccCCcccccCCcc-----cccchhcchhhhhhhhccCCCEEEecCC-ccccCCCC---cCCCCEEE
Confidence 456788999999999995432355553 555400 0134589999997 46777762 47899999
Q ss_pred EeCCCCCCCCCCCCCCCCCcEEEEeCCCCCCccccccccCCCCCccEEecccCccccccccccCCCCccEEEeccCCCcc
Q 011033 83 IYKCSSLVSFPEVALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGVQLPRSLKRLDILSCDNIR 162 (495)
Q Consensus 83 l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~ 162 (495)
+++| .++.+|. .+.+|++|++++|. +..++.. . ++|++|++++| .++.+|....+++|+.|+++++ .++
T Consensus 98 l~~n-~l~~lp~--~~~~L~~L~l~~n~-l~~l~~~---~--~~L~~L~L~~n-~l~~lp~~~~l~~L~~L~l~~N-~l~ 166 (454)
T 1jl5_A 98 ASCN-SLTELPE--LPQSLKSLLVDNNN-LKALSDL---P--PLLEYLGVSNN-QLEKLPELQNSSFLKIIDVDNN-SLK 166 (454)
T ss_dssp CCSS-CCSSCCC--CCTTCCEEECCSSC-CSCCCSC---C--TTCCEEECCSS-CCSSCCCCTTCTTCCEEECCSS-CCS
T ss_pred ccCC-cCCcccc--ccCCCcEEECCCCc-cCcccCC---C--CCCCEEECcCC-CCCCCcccCCCCCCCEEECCCC-cCc
Confidence 9987 6666774 35789999999986 5555542 1 57999999885 5667776678889999999885 555
Q ss_pred ccccccccccCCCCccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcC
Q 011033 163 TLTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLD 242 (495)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 242 (495)
.+ +... .+++.|+++++ .++.+ +...-.++|+.|++++|...+ +|..
T Consensus 167 ~l--p~~~--------------~~L~~L~L~~n-~l~~l-------------~~~~~l~~L~~L~l~~N~l~~-l~~~-- 213 (454)
T 1jl5_A 167 KL--PDLP--------------PSLEFIAAGNN-QLEEL-------------PELQNLPFLTAIYADNNSLKK-LPDL-- 213 (454)
T ss_dssp CC--CCCC--------------TTCCEEECCSS-CCSSC-------------CCCTTCTTCCEEECCSSCCSS-CCCC--
T ss_pred cc--CCCc--------------ccccEEECcCC-cCCcC-------------ccccCCCCCCEEECCCCcCCc-CCCC--
Confidence 44 4322 25888888874 44443 211223778899988776543 3332
Q ss_pred CCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCccccccccccccCCCCccee
Q 011033 243 NNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQL 322 (495)
Q Consensus 243 ~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 322 (495)
.++|++|++++| .+..+|. +..+++|++|++++| .++.++.. +++|+.|++++|. ++.+|.. +++|++|
T Consensus 214 -~~~L~~L~l~~n-~l~~lp~-~~~l~~L~~L~l~~N-~l~~l~~~---~~~L~~L~l~~N~-l~~l~~~---~~~L~~L 282 (454)
T 1jl5_A 214 -PLSLESIVAGNN-ILEELPE-LQNLPFLTTIYADNN-LLKTLPDL---PPSLEALNVRDNY-LTDLPEL---PQSLTFL 282 (454)
T ss_dssp -CTTCCEEECCSS-CCSSCCC-CTTCTTCCEEECCSS-CCSSCCSC---CTTCCEEECCSSC-CSCCCCC---CTTCCEE
T ss_pred -cCcccEEECcCC-cCCcccc-cCCCCCCCEEECCCC-cCCccccc---ccccCEEECCCCc-ccccCcc---cCcCCEE
Confidence 258889999886 4556764 778889999999887 55666543 3688899998875 5556653 3788888
Q ss_pred Eecc-ccccccCCCCCCccceeEeeccCccchhhhcccccCCCC-CccceEEeeccccccccchhhhccccccCCCCCCC
Q 011033 323 TIGG-ELPSLEEDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRF-SSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASL 400 (495)
Q Consensus 323 ~l~~-~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L 400 (495)
++++ .+..++. .+++|++|++++|.... +..+ ++|++|++++| .+..++. .+++|
T Consensus 283 ~ls~N~l~~l~~--~~~~L~~L~l~~N~l~~---------i~~~~~~L~~L~Ls~N--~l~~lp~----------~~~~L 339 (454)
T 1jl5_A 283 DVSENIFSGLSE--LPPNLYYLNASSNEIRS---------LCDLPPSLEELNVSNN--KLIELPA----------LPPRL 339 (454)
T ss_dssp ECCSSCCSEESC--CCTTCCEEECCSSCCSE---------ECCCCTTCCEEECCSS--CCSCCCC----------CCTTC
T ss_pred ECcCCccCcccC--cCCcCCEEECcCCcCCc---------ccCCcCcCCEEECCCC--ccccccc----------cCCcC
Confidence 8888 6666543 35788888888886321 2233 47888888887 6666554 34688
Q ss_pred ceeeecccccccccccccccCCCCCeEeccCCCCCCC---CCCC-CCc-------------cccceeeccCCch
Q 011033 401 TSLRIVDFPNLERLSSSIVDLQNLTHLNLVDCPKLKY---FPEK-GLP-------------SSLLQLSIYRCPL 457 (495)
Q Consensus 401 ~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~---l~~~-~~~-------------~~L~~L~l~~c~~ 457 (495)
+.|++++ +.++.+|. .+++|++|++++|+ +.. +|.. ..+ ++|++|++++|+.
T Consensus 340 ~~L~L~~-N~l~~lp~---~l~~L~~L~L~~N~-l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l 408 (454)
T 1jl5_A 340 ERLIASF-NHLAEVPE---LPQNLKQLHVEYNP-LREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPL 408 (454)
T ss_dssp CEEECCS-SCCSCCCC---CCTTCCEEECCSSC-CSSCCCCCTTCCEEECCC----------------------
T ss_pred CEEECCC-Cccccccc---hhhhccEEECCCCC-CCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcC
Confidence 8888888 56777875 47888888888854 555 3332 112 6788888888764
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=4.4e-24 Score=213.30 Aligned_cols=306 Identities=15% Similarity=0.177 Sum_probs=217.6
Q ss_pred HhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCCCCCCCCCcEEEEeCCCCCCccccccccCC
Q 011033 44 QQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKIIEIEGCDALKSLPEAWMCDT 123 (495)
Q Consensus 44 ~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 123 (495)
++.+ ++|++|++++| .+..+| .++.+++|++|++++| .++.++ ++.+++|++|++++|. +..++ +...
T Consensus 38 ~~~l----~~L~~L~Ls~n-~l~~~~-~l~~l~~L~~L~Ls~n-~l~~~~-~~~l~~L~~L~Ls~N~-l~~~~--~~~l- 105 (457)
T 3bz5_A 38 EEQL----ATLTSLDCHNS-SITDMT-GIEKLTGLTKLICTSN-NITTLD-LSQNTNLTYLACDSNK-LTNLD--VTPL- 105 (457)
T ss_dssp HHHH----TTCCEEECCSS-CCCCCT-TGGGCTTCSEEECCSS-CCSCCC-CTTCTTCSEEECCSSC-CSCCC--CTTC-
T ss_pred hhHc----CCCCEEEccCC-CcccCh-hhcccCCCCEEEccCC-cCCeEc-cccCCCCCEEECcCCC-Cceee--cCCC-
Confidence 7777 99999999997 556677 5889999999999998 677776 8889999999999987 55554 4434
Q ss_pred CCCccEEecccCccccccccccCCCCccEEEeccCCCccccccccccccCCCCccCcccCccccceeeecCCCCCccccc
Q 011033 124 NSSLETLYIEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFS 203 (495)
Q Consensus 124 ~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 203 (495)
++|++|++++| .++.++ ...+++|+.|+++++ .++.+ .+
T Consensus 106 -~~L~~L~L~~N-~l~~l~-~~~l~~L~~L~l~~N-~l~~l--------------------------~l----------- 144 (457)
T 3bz5_A 106 -TKLTYLNCDTN-KLTKLD-VSQNPLLTYLNCARN-TLTEI--------------------------DV----------- 144 (457)
T ss_dssp -TTCCEEECCSS-CCSCCC-CTTCTTCCEEECTTS-CCSCC--------------------------CC-----------
T ss_pred -CcCCEEECCCC-cCCeec-CCCCCcCCEEECCCC-cccee--------------------------cc-----------
Confidence 88999999885 455554 456677777777764 23222 01
Q ss_pred CCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCcc
Q 011033 204 QNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLV 283 (495)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~ 283 (495)
..+ ++|+.|++++|.....+ .+..+++|+.|++++| .+..++ +..+++|+.|++++| .++
T Consensus 145 -------------~~l-~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n-~l~~l~--l~~l~~L~~L~l~~N-~l~ 204 (457)
T 3bz5_A 145 -------------SHN-TQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN-KITELD--VSQNKLLNRLNCDTN-NIT 204 (457)
T ss_dssp -------------TTC-TTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSS-CCCCCC--CTTCTTCCEEECCSS-CCS
T ss_pred -------------ccC-CcCCEEECCCCCccccc--ccccCCcCCEEECCCC-ccceec--cccCCCCCEEECcCC-cCC
Confidence 111 67888888888666655 3778999999999995 466665 788999999999998 566
Q ss_pred ccCCCCCCCCCCcEEEecCccccccccccccCCCCcceeEecc-ccccccCCCCCCccc----------eeEeeccCccc
Q 011033 284 SFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSLEEDGLPTNLH----------SLHIWGNMEIW 352 (495)
Q Consensus 284 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~~~~~~L~----------~L~l~~~~~~~ 352 (495)
.++ +..+++|+.|++++|. ++.+| +..+++|+.|++++ .+..++. +.+++|+ .|++++|....
T Consensus 205 ~~~--l~~l~~L~~L~Ls~N~-l~~ip--~~~l~~L~~L~l~~N~l~~~~~-~~l~~L~~L~l~~n~L~~L~l~~n~~~~ 278 (457)
T 3bz5_A 205 KLD--LNQNIQLTFLDCSSNK-LTEID--VTPLTQLTYFDCSVNPLTELDV-STLSKLTTLHCIQTDLLEIDLTHNTQLI 278 (457)
T ss_dssp CCC--CTTCTTCSEEECCSSC-CSCCC--CTTCTTCSEEECCSSCCSCCCC-TTCTTCCEEECTTCCCSCCCCTTCTTCC
T ss_pred eec--cccCCCCCEEECcCCc-ccccC--ccccCCCCEEEeeCCcCCCcCH-HHCCCCCEEeccCCCCCEEECCCCccCC
Confidence 553 6678899999999986 55576 88999999999999 7777653 3445555 45555554222
Q ss_pred hhhhcccccCCCCCccceEEeeccccccccchhhhccccc-cCCCCCCCceeeecccccccccccccccCCCCCeEeccC
Q 011033 353 KSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGT-ALPLPASLTSLRIVDFPNLERLSSSIVDLQNLTHLNLVD 431 (495)
Q Consensus 353 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~ 431 (495)
. .....+++|+.|++++| ..+..++.....+.. .+...++|+.|++++ ++++.++ +.++++|++|++++
T Consensus 279 ~------~~~~~l~~L~~L~Ls~n-~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~-N~l~~l~--l~~l~~L~~L~l~~ 348 (457)
T 3bz5_A 279 Y------FQAEGCRKIKELDVTHN-TQLYLLDCQAAGITELDLSQNPKLVYLYLNN-TELTELD--VSHNTKLKSLSCVN 348 (457)
T ss_dssp E------EECTTCTTCCCCCCTTC-TTCCEEECTTCCCSCCCCTTCTTCCEEECTT-CCCSCCC--CTTCTTCSEEECCS
T ss_pred c------ccccccccCCEEECCCC-cccceeccCCCcceEechhhcccCCEEECCC-Ccccccc--cccCCcCcEEECCC
Confidence 1 12467788999999998 345555543221111 123345777777777 5666664 77888889998888
Q ss_pred CCCCCCCC
Q 011033 432 CPKLKYFP 439 (495)
Q Consensus 432 c~~l~~l~ 439 (495)
+.++.++
T Consensus 349 -N~l~~l~ 355 (457)
T 3bz5_A 349 -AHIQDFS 355 (457)
T ss_dssp -SCCCBCT
T ss_pred -CCCCCcc
Confidence 4566654
No 33
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=1.9e-24 Score=212.41 Aligned_cols=299 Identities=17% Similarity=0.148 Sum_probs=217.9
Q ss_pred ccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCcccc-ccccCCCCccEEEEeCCCCCCCCCC-
Q 011033 17 DICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLP-QSSLSLSSLREIEIYKCSSLVSFPE- 94 (495)
Q Consensus 17 ~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~-~~~~~l~~L~~L~l~~~~~l~~l~~- 94 (495)
.+++++.|++++ +.++.++.+ .+..+ ++|++|++++|. +..++ ..+..+++|++|++++| .++.+++
T Consensus 43 ~l~~l~~l~l~~-~~l~~l~~~----~~~~l----~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~ 111 (390)
T 3o6n_A 43 TLNNQKIVTFKN-STMRKLPAA----LLDSF----RQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPH 111 (390)
T ss_dssp GGCCCSEEEEES-CEESEECTH----HHHHC----CCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCCCCCTT
T ss_pred ccCCceEEEecC-CchhhCChh----Hhccc----ccCcEEECCCCc-ccccChhhccCCCCcCEEECCCC-CCCcCCHH
Confidence 468999999999 578888885 67888 999999999984 45554 47899999999999998 5766654
Q ss_pred -CCCCCCCcEEEEeCCCCCCcccccc-ccCCCCCccEEecccCccccccccc--cCCCCccEEEeccCCCcccccccccc
Q 011033 95 -VALPSKLKIIEIEGCDALKSLPEAW-MCDTNSSLETLYIEHCRTLTYLAGV--QLPRSLKRLDILSCDNIRTLTVEEGI 170 (495)
Q Consensus 95 -~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~ 170 (495)
++.+++|++|++++|. +..+|..+ ... ++|++|++++| .++.++.. ..+++|+.|+++++ .++.+ +..
T Consensus 112 ~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l--~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~--~~~- 183 (390)
T 3o6n_A 112 VFQNVPLLTVLVLERND-LSSLPRGIFHNT--PKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSN-RLTHV--DLS- 183 (390)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTC--TTCCEEECCSS-CCCBCCTTTTSSCTTCCEEECCSS-CCSBC--CGG-
T ss_pred HhcCCCCCCEEECCCCc-cCcCCHHHhcCC--CCCcEEECCCC-ccCccChhhccCCCCCCEEECCCC-cCCcc--ccc-
Confidence 7889999999999987 66777764 344 89999999986 45555442 66889999999985 55544 211
Q ss_pred ccCCCCccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEE
Q 011033 171 QSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETI 250 (495)
Q Consensus 171 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 250 (495)
..++++.++++++ .++.+ ..+++|+.|++++|..... +. ...++|+.|
T Consensus 184 ------------~l~~L~~L~l~~n-~l~~~----------------~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L 231 (390)
T 3o6n_A 184 ------------LIPSLFHANVSYN-LLSTL----------------AIPIAVEELDASHNSINVV-RG--PVNVELTIL 231 (390)
T ss_dssp ------------GCTTCSEEECCSS-CCSEE----------------ECCSSCSEEECCSSCCCEE-EC--CCCSSCCEE
T ss_pred ------------cccccceeecccc-ccccc----------------CCCCcceEEECCCCeeeec-cc--cccccccEE
Confidence 1346888888773 44333 2235788888887665433 32 235788888
Q ss_pred eeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCccccccccccccCCCCcceeEecc-ccc
Q 011033 251 NISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELP 329 (495)
Q Consensus 251 ~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~ 329 (495)
++++|. +... ..+..+++|++|++++|..-...+..+..+++|+.|++++|. ++.+|..+..+++|++|++++ .+.
T Consensus 232 ~l~~n~-l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~n~l~ 308 (390)
T 3o6n_A 232 KLQHNN-LTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHLL 308 (390)
T ss_dssp ECCSSC-CCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC-CCEEECSSSCCTTCCEEECCSSCCC
T ss_pred ECCCCC-Cccc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc-CcccCcccCCCCCCCEEECCCCcce
Confidence 888854 4333 457778888888888884333345566777888888888875 566666667788888888888 776
Q ss_pred cccCC-CCCCccceeEeeccCccchhhhcccccCCCCCccceEEeecc
Q 011033 330 SLEED-GLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGC 376 (495)
Q Consensus 330 ~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 376 (495)
.++.. ..+++|++|++++|.... ..+..+++|+.|++++|
T Consensus 309 ~~~~~~~~l~~L~~L~L~~N~i~~-------~~~~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 309 HVERNQPQFDRLENLYLDHNSIVT-------LKLSTHHTLKNLTLSHN 349 (390)
T ss_dssp CCGGGHHHHTTCSEEECCSSCCCC-------CCCCTTCCCSEEECCSS
T ss_pred ecCccccccCcCCEEECCCCccce-------eCchhhccCCEEEcCCC
Confidence 66553 456788888888887332 13567788888888887
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=9.8e-24 Score=213.14 Aligned_cols=309 Identities=18% Similarity=0.199 Sum_probs=217.2
Q ss_pred ccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccc-cccccCCCCccEEEEeCCCCCCCCCC--CCC
Q 011033 21 LRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKL-PQSSLSLSSLREIEIYKCSSLVSFPE--VAL 97 (495)
Q Consensus 21 L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l-~~~~~~l~~L~~L~l~~~~~l~~l~~--~~~ 97 (495)
-+.++.++ ..++.+|.+ + +++++.|++++|. +..+ +..+..+++|++|++++| .++.+++ +..
T Consensus 13 ~~~v~c~~-~~l~~ip~~-----~------~~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~ 78 (477)
T 2id5_A 13 DRAVLCHR-KRFVAVPEG-----I------PTETRLLDLGKNR-IKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNN 78 (477)
T ss_dssp TTEEECCS-CCCSSCCSC-----C------CTTCSEEECCSSC-CCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTT
T ss_pred CCEEEeCC-CCcCcCCCC-----C------CCCCcEEECCCCc-cceECHhHccCCCCCCEEECCCC-ccCEeChhhhhC
Confidence 35677777 577777764 2 2678999999874 4544 566888899999999887 5665533 788
Q ss_pred CCCCcEEEEeCCCCCCccccc-cccCCCCCccEEecccCccccccccc--cCCCCccEEEeccCCCccccccccccccCC
Q 011033 98 PSKLKIIEIEGCDALKSLPEA-WMCDTNSSLETLYIEHCRTLTYLAGV--QLPRSLKRLDILSCDNIRTLTVEEGIQSSS 174 (495)
Q Consensus 98 ~~~L~~L~l~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 174 (495)
+++|++|++++|. +..+|.. +... ++|++|++++|. ++.++.. ..+++|+.|+++++ .+..+ ...
T Consensus 79 l~~L~~L~L~~n~-l~~~~~~~~~~l--~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~l~~n-~l~~~--~~~----- 146 (477)
T 2id5_A 79 LFNLRTLGLRSNR-LKLIPLGVFTGL--SNLTKLDISENK-IVILLDYMFQDLYNLKSLEVGDN-DLVYI--SHR----- 146 (477)
T ss_dssp CTTCCEEECCSSC-CCSCCTTSSTTC--TTCCEEECTTSC-CCEECTTTTTTCTTCCEEEECCT-TCCEE--CTT-----
T ss_pred CccCCEEECCCCc-CCccCcccccCC--CCCCEEECCCCc-cccCChhHccccccCCEEECCCC-cccee--Chh-----
Confidence 8899999998877 5566654 3333 788888888854 4443222 55677777777764 33322 100
Q ss_pred CCccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeC
Q 011033 175 SSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISG 254 (495)
Q Consensus 175 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 254 (495)
.+. . .++|+.|++++|......+..+..+++|+.|++++
T Consensus 147 ----------------------~~~------------------~-l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 185 (477)
T 2id5_A 147 ----------------------AFS------------------G-LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRH 185 (477)
T ss_dssp ----------------------SST------------------T-CTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEES
T ss_pred ----------------------hcc------------------C-CCCCCEEECCCCcCcccChhHhcccCCCcEEeCCC
Confidence 000 1 16788888887766655556788889999999998
Q ss_pred CCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCcccccccc-ccccCCCCcceeEecc-cccccc
Q 011033 255 CENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALP-KGLHNLTSLQQLTIGG-ELPSLE 332 (495)
Q Consensus 255 ~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~-~l~~~~ 332 (495)
|......+..+..+++|+.|++++|.....++.......+|+.|++++|. ++.+| ..+..+++|+.|++++ .+..++
T Consensus 186 n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 264 (477)
T 2id5_A 186 LNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYNPISTIE 264 (477)
T ss_dssp CCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSC-CCSCCHHHHTTCTTCCEEECCSSCCCEEC
T ss_pred CcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCc-ccccCHHHhcCccccCeeECCCCcCCccC
Confidence 65443334568888999999999988888888766666689999999985 55665 3678889999999988 776665
Q ss_pred CC--CCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccCCCCCCCceeeecccc
Q 011033 333 ED--GLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFP 409 (495)
Q Consensus 333 ~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 409 (495)
.. ..+++|++|++++|.. ....+. .+.++++|+.|++++| .+..++... +..+++|+.|++++++
T Consensus 265 ~~~~~~l~~L~~L~L~~n~l-~~~~~~---~~~~l~~L~~L~L~~N--~l~~~~~~~------~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 265 GSMLHELLRLQEIQLVGGQL-AVVEPY---AFRGLNYLRVLNVSGN--QLTTLEESV------FHSVGNLETLILDSNP 331 (477)
T ss_dssp TTSCTTCTTCCEEECCSSCC-SEECTT---TBTTCTTCCEEECCSS--CCSCCCGGG------BSCGGGCCEEECCSSC
T ss_pred hhhccccccCCEEECCCCcc-ceECHH---HhcCcccCCEEECCCC--cCceeCHhH------cCCCcccCEEEccCCC
Confidence 53 4567888899888873 333333 5788889999999988 677666543 2345688888888843
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=7.1e-24 Score=208.39 Aligned_cols=300 Identities=16% Similarity=0.187 Sum_probs=216.2
Q ss_pred cccceeecccccCCcccccc-ccCCCCccEEEEeCCCCCCCCCC--CCCCCCCcEEEEeCCCCCCccc-cccccCCCCCc
Q 011033 52 CRLEYLRLSYCEGLVKLPQS-SLSLSSLREIEIYKCSSLVSFPE--VALPSKLKIIEIEGCDALKSLP-EAWMCDTNSSL 127 (495)
Q Consensus 52 ~~L~~L~ls~~~~l~~l~~~-~~~l~~L~~L~l~~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~L 127 (495)
++++.|+++++ .+..+|.. +..+++|++|++++| .++.++. +..+++|++|++++|. +..++ ..+... ++|
T Consensus 45 ~~l~~l~l~~~-~l~~l~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l--~~L 119 (390)
T 3o6n_A 45 NNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNV--PLL 119 (390)
T ss_dssp CCCSEEEEESC-EESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTC--TTC
T ss_pred CCceEEEecCC-chhhCChhHhcccccCcEEECCCC-cccccChhhccCCCCcCEEECCCCC-CCcCCHHHhcCC--CCC
Confidence 88999999987 56777765 678899999999997 5666654 7889999999999988 44444 445444 889
Q ss_pred cEEecccCccccccccc--cCCCCccEEEeccCCCccccccccccccCCCCccCcccCccccceeeecCCCCCcccccCC
Q 011033 128 ETLYIEHCRTLTYLAGV--QLPRSLKRLDILSCDNIRTLTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQN 205 (495)
Q Consensus 128 ~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 205 (495)
++|++++| .++.++.. ..+++|+.|+++++ .++.+ +... ....++|+.|++++ +.++.+
T Consensus 120 ~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~--~~~~----------~~~l~~L~~L~l~~-n~l~~~---- 180 (390)
T 3o6n_A 120 TVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNN-NLERI--EDDT----------FQATTSLQNLQLSS-NRLTHV---- 180 (390)
T ss_dssp CEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCBC--CTTT----------TSSCTTCCEEECCS-SCCSBC----
T ss_pred CEEECCCC-ccCcCCHHHhcCCCCCcEEECCCC-ccCcc--Chhh----------ccCCCCCCEEECCC-CcCCcc----
Confidence 99999985 56677664 56889999999985 45443 2211 12245788898888 345443
Q ss_pred CCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCcccc
Q 011033 206 ELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSF 285 (495)
Q Consensus 206 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l 285 (495)
+...+ ++|+.+++++|.... +...++|+.|++++| .+..++.. ..++|+.|++++| .++..
T Consensus 181 ---------~~~~l-~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n-~l~~~~~~--~~~~L~~L~l~~n-~l~~~ 241 (390)
T 3o6n_A 181 ---------DLSLI-PSLFHANVSYNLLST-----LAIPIAVEELDASHN-SINVVRGP--VNVELTILKLQHN-NLTDT 241 (390)
T ss_dssp ---------CGGGC-TTCSEEECCSSCCSE-----EECCSSCSEEECCSS-CCCEEECC--CCSSCCEEECCSS-CCCCC
T ss_pred ---------ccccc-cccceeecccccccc-----cCCCCcceEEECCCC-eeeecccc--ccccccEEECCCC-CCccc
Confidence 22333 789999998775432 234568999999885 45555443 3478999999988 45544
Q ss_pred CCCCCCCCCCcEEEecCccccccccccccCCCCcceeEecc-ccccccCC-CCCCccceeEeeccCccchhhhcccccCC
Q 011033 286 PEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSLEED-GLPTNLHSLHIWGNMEIWKSMIERGRGFH 363 (495)
Q Consensus 286 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 363 (495)
..+..+++|+.|++++|......|..+..+++|++|++++ .+..++.. ..+++|++|++++|.. .. ++. .+.
T Consensus 242 -~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l-~~-~~~---~~~ 315 (390)
T 3o6n_A 242 -AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHL-LH-VER---NQP 315 (390)
T ss_dssp -GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCC-CC-CGG---GHH
T ss_pred -HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcc-ee-cCc---ccc
Confidence 3456778999999999875555577888899999999998 77777654 4578999999999963 32 222 356
Q ss_pred CCCccceEEeeccccccccchhhhccccccCCCCCCCceeeeccccccc
Q 011033 364 RFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLE 412 (495)
Q Consensus 364 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 412 (495)
.+++|+.|++++| .+..++. ..+++|+.|+++++ .+.
T Consensus 316 ~l~~L~~L~L~~N--~i~~~~~---------~~~~~L~~L~l~~N-~~~ 352 (390)
T 3o6n_A 316 QFDRLENLYLDHN--SIVTLKL---------STHHTLKNLTLSHN-DWD 352 (390)
T ss_dssp HHTTCSEEECCSS--CCCCCCC---------CTTCCCSEEECCSS-CEE
T ss_pred ccCcCCEEECCCC--ccceeCc---------hhhccCCEEEcCCC-Ccc
Confidence 7889999999998 6766653 24678999999984 443
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=4.3e-24 Score=221.39 Aligned_cols=300 Identities=17% Similarity=0.135 Sum_probs=191.3
Q ss_pred ccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCC--
Q 011033 17 DICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE-- 94 (495)
Q Consensus 17 ~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~-- 94 (495)
.+.+++.+++++ +.++.+|++ .+..+ ++|++|++++|......|..++.+++|++|++++| .++.+++
T Consensus 49 ~l~~l~~l~l~~-~~l~~lp~~----~~~~l----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~ 118 (597)
T 3oja_B 49 TLNNQKIVTFKN-STMRKLPAA----LLDSF----RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHV 118 (597)
T ss_dssp GGCCCSEEEESS-CEESEECTH----HHHHC----CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTT
T ss_pred cCCCceEEEeeC-CCCCCcCHH----HHccC----CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCC-cCCCCCHHH
Confidence 467889999999 578888875 67777 99999999998543334457889999999999998 5666664
Q ss_pred CCCCCCCcEEEEeCCCCCCcccccc-ccCCCCCccEEecccCcccccccc--ccCCCCccEEEeccCCCccccccccccc
Q 011033 95 VALPSKLKIIEIEGCDALKSLPEAW-MCDTNSSLETLYIEHCRTLTYLAG--VQLPRSLKRLDILSCDNIRTLTVEEGIQ 171 (495)
Q Consensus 95 ~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 171 (495)
++.+++|++|++++|. +..+|..+ ... ++|++|++++| .++.++. ...+++|+.|+++++ .++.+ +...
T Consensus 119 ~~~l~~L~~L~L~~n~-l~~l~~~~~~~l--~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~--~~~~- 190 (597)
T 3oja_B 119 FQNVPLLTVLVLERND-LSSLPRGIFHNT--PKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSN-RLTHV--DLSL- 190 (597)
T ss_dssp TTTCTTCCEEECCSSC-CCCCCTTTTTTC--TTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTS-CCSBC--CGGG-
T ss_pred HcCCCCCCEEEeeCCC-CCCCCHHHhccC--CCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCC-CCCCc--Chhh-
Confidence 6889999999999987 56677654 344 88999999986 4555443 266789999999885 45444 2111
Q ss_pred cCCCCccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEe
Q 011033 172 SSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETIN 251 (495)
Q Consensus 172 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 251 (495)
.++++.++++++ .++.+ ..+++|+.|++++|..... +.. ..++|+.|+
T Consensus 191 ------------l~~L~~L~l~~n-~l~~l----------------~~~~~L~~L~ls~n~l~~~-~~~--~~~~L~~L~ 238 (597)
T 3oja_B 191 ------------IPSLFHANVSYN-LLSTL----------------AIPIAVEELDASHNSINVV-RGP--VNVELTILK 238 (597)
T ss_dssp ------------CTTCSEEECCSS-CCSEE----------------ECCTTCSEEECCSSCCCEE-ECS--CCSCCCEEE
T ss_pred ------------hhhhhhhhcccC-ccccc----------------cCCchhheeeccCCccccc-ccc--cCCCCCEEE
Confidence 345777777663 33322 1224566666665543322 221 124666666
Q ss_pred eeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCccccccccccccCCCCcceeEecc-cccc
Q 011033 252 ISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPS 330 (495)
Q Consensus 252 l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~ 330 (495)
+++|. +.. +..+..+++|+.|++++|..-...+..+..+++|+.|++++|. ++.+|..+..+++|+.|++++ .+..
T Consensus 239 L~~n~-l~~-~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~Ls~N~l~~ 315 (597)
T 3oja_B 239 LQHNN-LTD-TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHLLH 315 (597)
T ss_dssp CCSSC-CCC-CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC-CCEEECSSSCCTTCCEEECCSSCCCC
T ss_pred CCCCC-CCC-ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC-CCCCCcccccCCCCcEEECCCCCCCc
Confidence 66643 222 2445666666666666663333334455566666666666654 444555555666666666666 5555
Q ss_pred ccCC-CCCCccceeEeeccCccchhhhcccccCCCCCccceEEeecc
Q 011033 331 LEED-GLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGC 376 (495)
Q Consensus 331 ~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 376 (495)
+|.. ..+++|+.|++++|.... ..+..+++|+.|++++|
T Consensus 316 i~~~~~~l~~L~~L~L~~N~l~~-------~~~~~~~~L~~L~l~~N 355 (597)
T 3oja_B 316 VERNQPQFDRLENLYLDHNSIVT-------LKLSTHHTLKNLTLSHN 355 (597)
T ss_dssp CGGGHHHHTTCSEEECCSSCCCC-------CCCCTTCCCSEEECCSS
T ss_pred cCcccccCCCCCEEECCCCCCCC-------cChhhcCCCCEEEeeCC
Confidence 5433 345666677776665322 12455666777777666
No 37
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.92 E-value=1.8e-23 Score=215.48 Aligned_cols=406 Identities=14% Similarity=0.051 Sum_probs=255.6
Q ss_pred ccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCcccc-ccccCCCCccEEEEeCCCCCCCCCC-
Q 011033 17 DICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLP-QSSLSLSSLREIEIYKCSSLVSFPE- 94 (495)
Q Consensus 17 ~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~-~~~~~l~~L~~L~l~~~~~l~~l~~- 94 (495)
.+...+++++++ ++++.||.+ + +++|++|++++|. +..++ ..+..+++|++|++++| .++.+++
T Consensus 29 ~~~~~~~l~ls~-~~L~~ip~~-----~------~~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~ 94 (562)
T 3a79_B 29 SNELESMVDYSN-RNLTHVPKD-----L------PPRTKALSLSQNS-ISELRMPDISFLSELRVLRLSHN-RIRSLDFH 94 (562)
T ss_dssp ----CCEEECTT-SCCCSCCTT-----S------CTTCCEEECCSSC-CCCCCGGGTTTCTTCCEEECCSC-CCCEECTT
T ss_pred ccCCCcEEEcCC-CCCccCCCC-----C------CCCcCEEECCCCC-ccccChhhhccCCCccEEECCCC-CCCcCCHH
Confidence 455678999999 589988875 2 2889999999985 45554 67999999999999998 6776643
Q ss_pred -CCCCCCCcEEEEeCCCCCCccccccccCCCCCccEEecccCccccccc---cccCCCCccEEEeccCCCcccccccccc
Q 011033 95 -VALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLA---GVQLPRSLKRLDILSCDNIRTLTVEEGI 170 (495)
Q Consensus 95 -~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~---~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 170 (495)
++.+++|++|++++|. +..+|.. .+++|++|++++| .++.++ ....+++|+.|+++++ .++...+.
T Consensus 95 ~~~~l~~L~~L~Ls~N~-l~~lp~~----~l~~L~~L~Ls~N-~l~~l~~p~~~~~l~~L~~L~L~~n-~l~~~~~~--- 164 (562)
T 3a79_B 95 VFLFNQDLEYLDVSHNR-LQNISCC----PMASLRHLDLSFN-DFDVLPVCKEFGNLTKLTFLGLSAA-KFRQLDLL--- 164 (562)
T ss_dssp TTTTCTTCCEEECTTSC-CCEECSC----CCTTCSEEECCSS-CCSBCCCCGGGGGCTTCCEEEEECS-BCCTTTTG---
T ss_pred HhCCCCCCCEEECCCCc-CCccCcc----ccccCCEEECCCC-CccccCchHhhcccCcccEEecCCC-ccccCchh---
Confidence 8899999999999988 6678876 3489999999996 466544 2377899999999984 44432111
Q ss_pred ccCCCCccCcccCcccc--ceeeecCCCCC-cccccCCCCcccccccc--------------------cCCCCCCccEEE
Q 011033 171 QSSSSSSSNRRYTSSLL--EKLEIRDCPSL-TCIFSQNELPATLESLE--------------------VGNLPPSLKSLF 227 (495)
Q Consensus 171 ~~~~~~~~~~~~~~~~L--~~L~l~~~~~l-~~~~~~~~~~~~~~~~~--------------------~~~~~~~L~~L~ 227 (495)
..+++ +.|+++++.-. +.. .+..+.... ...-.++|+.++
T Consensus 165 ------------~l~~L~L~~L~L~~n~l~~~~~-----~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~ 227 (562)
T 3a79_B 165 ------------PVAHLHLSCILLDLVSYHIKGG-----ETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSN 227 (562)
T ss_dssp ------------GGTTSCEEEEEEEESSCCCCSS-----SCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEE
T ss_pred ------------hhhhceeeEEEeeccccccccc-----CcccccccCcceEEEEecCccchhhhhhhcccccceEEEec
Confidence 12234 88998885320 111 111111100 000114567777
Q ss_pred eecCCC----chhhhhhcCCCC---------------------------CCcEEeeeCCCCCCcccccC-----CCCCCc
Q 011033 228 VWYCPK----LESIAERLDNNT---------------------------SLETINISGCENLKILPSGL-----HNLGQL 271 (495)
Q Consensus 228 l~~~~~----~~~~~~~~~~~~---------------------------~L~~L~l~~~~~~~~l~~~~-----~~l~~L 271 (495)
+++|.. .......+..++ +|++|++++|...+.+|..+ ..++.|
T Consensus 228 l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L 307 (562)
T 3a79_B 228 IKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSL 307 (562)
T ss_dssp EECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEE
T ss_pred ccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchhe
Confidence 766531 111111223333 55555555544333444443 344444
Q ss_pred cEEEeeCCCCccccCC-CC---CCCCCCcEEEecCccccccccccccCCCCcceeEecc-ccccc-cC-CCCCCccceeE
Q 011033 272 QEIEIWECENLVSFPE-GG---LPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSL-EE-DGLPTNLHSLH 344 (495)
Q Consensus 272 ~~L~l~~~~~l~~l~~-~~---~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~-~~-~~~~~~L~~L~ 344 (495)
+.+++..+. + .+|. .. ...++|+.|++++|.. ..++ ....+++|++|++++ .+... +. ...+++|++|+
T Consensus 308 ~~~~~~~~~-~-~~p~~~~~~~~~~~~L~~L~l~~n~~-~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 383 (562)
T 3a79_B 308 MIEHVKNQV-F-LFSKEALYSVFAEMNIKMLSISDTPF-IHMV-CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLI 383 (562)
T ss_dssp EEEEEEECC-C-SSCHHHHHHHHHTCCCSEEEEESSCC-CCCC-CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEE
T ss_pred ehhhcccce-e-ecChhhhhhhhccCcceEEEccCCCc-cccc-CccCCCCceEEECCCCccccchhhhhcccCCCCEEE
Confidence 444444432 1 2221 00 0113688888888753 3221 226789999999999 66653 22 25678999999
Q ss_pred eeccCccch-hhhcccccCCCCCccceEEeecccccccc-chhhhccccccCCCCCCCceeeecccccccccccccccCC
Q 011033 345 IWGNMEIWK-SMIERGRGFHRFSSLRHLTIEGCDDDMVS-FPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSSIVDLQ 422 (495)
Q Consensus 345 l~~~~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~ 422 (495)
+++|....- ..+. .+.++++|++|++++| .+.. ++... +..+++|+.|+++++.--..+|..+. +
T Consensus 384 L~~N~l~~~~~~~~---~~~~l~~L~~L~l~~N--~l~~~~~~~~------~~~l~~L~~L~l~~n~l~~~~~~~l~--~ 450 (562)
T 3a79_B 384 LQRNGLKNFFKVAL---MTKNMSSLETLDVSLN--SLNSHAYDRT------CAWAESILVLNLSSNMLTGSVFRCLP--P 450 (562)
T ss_dssp CCSSCCCBTTHHHH---TTTTCTTCCEEECTTS--CCBSCCSSCC------CCCCTTCCEEECCSSCCCGGGGSSCC--T
T ss_pred CCCCCcCCcccchh---hhcCCCCCCEEECCCC--cCCCccChhh------hcCcccCCEEECCCCCCCcchhhhhc--C
Confidence 999973321 1222 5788999999999998 5655 55432 24567999999999543344554333 7
Q ss_pred CCCeEeccCCCCCCCCCCC-CCccccceeeccCCchhHHhhhcCCCeeeecceEEeccCcc
Q 011033 423 NLTHLNLVDCPKLKYFPEK-GLPSSLLQLSIYRCPLMEEKCRKDGGLLTHIPSVQIDLNGF 482 (495)
Q Consensus 423 ~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~c~~l~~~~~~~~~~i~~~~~~~i~~~~~ 482 (495)
+|++|++++| .++.+|.. ..+++|++|++++|..- .+-...-+.+.++..+++.+|.+
T Consensus 451 ~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 451 KVKVLDLHNN-RIMSIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp TCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCB
T ss_pred cCCEEECCCC-cCcccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCc
Confidence 9999999995 68899874 34789999999999633 22221011355666677777655
No 38
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=7.6e-24 Score=213.94 Aligned_cols=293 Identities=20% Similarity=0.207 Sum_probs=201.2
Q ss_pred cccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCC--C
Q 011033 18 ICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE--V 95 (495)
Q Consensus 18 ~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~--~ 95 (495)
.+++++|++++ +.++.++++ .|.++ ++|++|++++|......|..+..+++|++|++++| .++.+|. +
T Consensus 31 ~~~l~~L~L~~-n~l~~~~~~----~~~~l----~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~ 100 (477)
T 2id5_A 31 PTETRLLDLGK-NRIKTLNQD----EFASF----PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVF 100 (477)
T ss_dssp CTTCSEEECCS-SCCCEECTT----TTTTC----TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCTTSS
T ss_pred CCCCcEEECCC-CccceECHh----HccCC----CCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-cCCccCcccc
Confidence 35799999999 678888764 58888 99999999998544445778999999999999998 6888875 7
Q ss_pred CCCCCCcEEEEeCCCCCCccccccccCCCCCccEEecccCccccccccc--cCCCCccEEEeccCCCccccccccccccC
Q 011033 96 ALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGV--QLPRSLKRLDILSCDNIRTLTVEEGIQSS 173 (495)
Q Consensus 96 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 173 (495)
..+++|++|++++|......+..+... ++|++|+++++ .++.++.. ..+++|+.|+++++ .++.+ +...
T Consensus 101 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l--~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~--~~~~--- 171 (477)
T 2id5_A 101 TGLSNLTKLDISENKIVILLDYMFQDL--YNLKSLEVGDN-DLVYISHRAFSGLNSLEQLTLEKC-NLTSI--PTEA--- 171 (477)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTC--TTCCEEEECCT-TCCEECTTSSTTCTTCCEEEEESC-CCSSC--CHHH---
T ss_pred cCCCCCCEEECCCCccccCChhHcccc--ccCCEEECCCC-ccceeChhhccCCCCCCEEECCCC-cCccc--ChhH---
Confidence 889999999999998555555565545 89999999985 45554432 66789999999986 45444 2211
Q ss_pred CCCccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeee
Q 011033 174 SSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINIS 253 (495)
Q Consensus 174 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 253 (495)
....++|+.|++.++ .++.+.. . ... -.++|+.|++++|...+.++.......+|+.|+++
T Consensus 172 -------l~~l~~L~~L~l~~n-~i~~~~~-----~-----~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 232 (477)
T 2id5_A 172 -------LSHLHGLIVLRLRHL-NINAIRD-----Y-----SFK-RLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSIT 232 (477)
T ss_dssp -------HTTCTTCCEEEEESC-CCCEECT-----T-----CSC-SCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEE
T ss_pred -------hcccCCCcEEeCCCC-cCcEeCh-----h-----hcc-cCcccceeeCCCCccccccCcccccCccccEEECc
Confidence 112446777777763 3333300 0 011 12667777777777776666655556677777777
Q ss_pred CCCCCCccc-ccCCCCCCccEEEeeCCCCccccCC-CCCCCCCCcEEEecCccccccccccccCCCCcceeEecc-cccc
Q 011033 254 GCENLKILP-SGLHNLGQLQEIEIWECENLVSFPE-GGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPS 330 (495)
Q Consensus 254 ~~~~~~~l~-~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~ 330 (495)
+| .+..++ ..+..+++|+.|++++|. +..++. .+..+++|+.|++++|......|..+..+++|++|++++ .+..
T Consensus 233 ~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 310 (477)
T 2id5_A 233 HC-NLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTT 310 (477)
T ss_dssp SS-CCCSCCHHHHTTCTTCCEEECCSSC-CCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSC
T ss_pred CC-cccccCHHHhcCccccCeeECCCCc-CCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCce
Confidence 74 344554 346677777777777773 444443 456667777777777764444455677777777777777 6665
Q ss_pred ccCC--CCCCccceeEeeccCc
Q 011033 331 LEED--GLPTNLHSLHIWGNME 350 (495)
Q Consensus 331 ~~~~--~~~~~L~~L~l~~~~~ 350 (495)
++.. ..+++|++|++++|..
T Consensus 311 ~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 311 LEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp CCGGGBSCGGGCCEEECCSSCE
T ss_pred eCHhHcCCCcccCEEEccCCCc
Confidence 5543 3456667777776653
No 39
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.92 E-value=2.9e-23 Score=217.35 Aligned_cols=426 Identities=17% Similarity=0.132 Sum_probs=231.7
Q ss_pred cccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCcccc-ccccCCCCccEEEEeCCCCCCCCCC--CC
Q 011033 20 SLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLP-QSSLSLSSLREIEIYKCSSLVSFPE--VA 96 (495)
Q Consensus 20 ~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~-~~~~~l~~L~~L~l~~~~~l~~l~~--~~ 96 (495)
++++|++++ +.++.|+++ .|.++ ++|++|+|++| .+..++ .+|.++++|++|+|++| .++.+|. +.
T Consensus 53 ~~~~LdLs~-N~i~~l~~~----~f~~l----~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~ 121 (635)
T 4g8a_A 53 STKNLDLSF-NPLRHLGSY----SFFSF----PELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFS 121 (635)
T ss_dssp TCCEEECTT-SCCCEECTT----TTTTC----TTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTC-CCCEECGGGGT
T ss_pred CCCEEEeeC-CCCCCCCHH----HHhCC----CCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCC-cCCCCCHHHhc
Confidence 577777777 677777664 46777 77777777776 445554 35777777777777776 5666664 67
Q ss_pred CCCCCcEEEEeCCCCCCcccc-ccccCCCCCccEEecccCcccccc--ccc-cCCCCccEEEeccCCCccccccccccc-
Q 011033 97 LPSKLKIIEIEGCDALKSLPE-AWMCDTNSSLETLYIEHCRTLTYL--AGV-QLPRSLKRLDILSCDNIRTLTVEEGIQ- 171 (495)
Q Consensus 97 ~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~~--~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~- 171 (495)
.+++|++|++++|. +..++. .+..+ ++|++|++++|. ++.+ +.. ..+++|+.|+++++ .++.+. +..+.
T Consensus 122 ~L~~L~~L~Ls~N~-l~~l~~~~~~~L--~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~-~~~l~~ 195 (635)
T 4g8a_A 122 GLSSLQKLVAVETN-LASLENFPIGHL--KTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSN-KIQSIY-CTDLRV 195 (635)
T ss_dssp TCTTCCEEECTTSC-CCCSTTCCCTTC--TTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSS-CCCEEC-GGGGHH
T ss_pred CCCCCCEEECCCCc-CCCCChhhhhcC--cccCeeccccCc-cccCCCchhhccchhhhhhcccCc-cccccc-cccccc
Confidence 77777777777776 444544 34334 777777777743 3332 222 45677777777764 333221 00000
Q ss_pred ------------cCCCCc---cCcccCccccceeeecC---------------------------CC---CCccc----c
Q 011033 172 ------------SSSSSS---SNRRYTSSLLEKLEIRD---------------------------CP---SLTCI----F 202 (495)
Q Consensus 172 ------------~~~~~~---~~~~~~~~~L~~L~l~~---------------------------~~---~l~~~----~ 202 (495)
-+.+.. .........+..+++.+ .. .+... +
T Consensus 196 L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~ 275 (635)
T 4g8a_A 196 LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL 275 (635)
T ss_dssp HHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTT
T ss_pred hhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccccc
Confidence 000000 00000000011111110 00 00000 0
Q ss_pred c--------------CCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCC---------------------CCCC
Q 011033 203 S--------------QNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDN---------------------NTSL 247 (495)
Q Consensus 203 ~--------------~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~---------------------~~~L 247 (495)
. ......... ........++.+.+..+......+ +.. +..|
T Consensus 276 ~~~~~l~~~~l~~~~~~~~~~~~~--~~~~~~~~l~~l~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~L 351 (635)
T 4g8a_A 276 EGLCNLTIEEFRLAYLDYYLDGII--DLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSL 351 (635)
T ss_dssp GGGGGSEEEEEEEECCCSCEEECT--TTTGGGTTCSEEEEESCEEEECGG--GGSCCCCSEEEEESCEESSCCCCBCTTC
T ss_pred ccccchhhhhhhhhhhcccccchh--hhhhhhcccccccccccccccccc--cccchhhhhhhcccccccCcCcccchhh
Confidence 0 000000000 000111334444444333222111 222 3344
Q ss_pred cEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCcc--ccCCCCCCCCCCcEEEecCccccccccccccCCCCcceeEec
Q 011033 248 ETINISGCENLKILPSGLHNLGQLQEIEIWECENLV--SFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIG 325 (495)
Q Consensus 248 ~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 325 (495)
+.+.+..+... .. .....+++|+.|++++|.... ..+.....+.+|+.+++..+. ...++..+..+++|+.+++.
T Consensus 352 ~~l~l~~n~~~-~~-~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~-~~~~~~~~~~l~~L~~l~l~ 428 (635)
T 4g8a_A 352 KRLTFTSNKGG-NA-FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQ 428 (635)
T ss_dssp CEEEEESCCSC-CB-CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCS-EEEECSCCTTCTTCCEEECT
T ss_pred hhcccccccCC-CC-cccccccccccchhhccccccccccccchhhhhhhhhhhccccc-cccccccccccccccchhhh
Confidence 44444443211 11 123356777777777763321 122233345577777777764 33344567778888888887
Q ss_pred c-ccccc---cCCCCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccCCCCCCCc
Q 011033 326 G-ELPSL---EEDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLT 401 (495)
Q Consensus 326 ~-~l~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 401 (495)
. ..... ......++++.++++.|.. ....+. .+..++.|+.|++++|. ....+.. ..+..+++|+
T Consensus 429 ~~~~~~~~~~~~~~~l~~l~~l~ls~n~l-~~~~~~---~~~~~~~L~~L~Ls~N~-~~~~~~~------~~~~~l~~L~ 497 (635)
T 4g8a_A 429 HSNLKQMSEFSVFLSLRNLIYLDISHTHT-RVAFNG---IFNGLSSLEVLKMAGNS-FQENFLP------DIFTELRNLT 497 (635)
T ss_dssp TSEEESTTSSCTTTTCTTCCEEECTTSCC-EECCTT---TTTTCTTCCEEECTTCE-EGGGEEC------SCCTTCTTCC
T ss_pred hcccccccccccccccccccccccccccc-cccccc---ccccchhhhhhhhhhcc-cccccCc------hhhhhccccC
Confidence 6 22222 1224467888888888873 223232 57788999999999972 2222222 1234678999
Q ss_pred eeeeccccccccc-ccccccCCCCCeEeccCCCCCCCCCCCC--CccccceeeccCCchhHHhhhcCCCeeeecceEEec
Q 011033 402 SLRIVDFPNLERL-SSSIVDLQNLTHLNLVDCPKLKYFPEKG--LPSSLLQLSIYRCPLMEEKCRKDGGLLTHIPSVQID 478 (495)
Q Consensus 402 ~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~l~~~~--~~~~L~~L~l~~c~~l~~~~~~~~~~i~~~~~~~i~ 478 (495)
.|++++ +.++.+ |..+.++++|++|++++| +++.++... .+++|++|++++|..............+.+..+++.
T Consensus 498 ~L~Ls~-N~L~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~ 575 (635)
T 4g8a_A 498 FLDLSQ-CQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 575 (635)
T ss_dssp EEECTT-SCCCEECTTTTTTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECT
T ss_pred EEECCC-CccCCcChHHHcCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEee
Confidence 999999 467776 458899999999999995 688887643 378999999999964332222222112456667777
Q ss_pred cCcc
Q 011033 479 LNGF 482 (495)
Q Consensus 479 ~~~~ 482 (495)
+|-+
T Consensus 576 ~Np~ 579 (635)
T 4g8a_A 576 QNDF 579 (635)
T ss_dssp TCCB
T ss_pred CCCC
Confidence 6554
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=3.8e-23 Score=214.33 Aligned_cols=276 Identities=16% Similarity=0.183 Sum_probs=119.1
Q ss_pred cccceeecccccCCcccccc-ccCCCCccEEEEeCCCCCCCCCC--CCCCCCCcEEEEeCCCCCCcccc-ccccCCCCCc
Q 011033 52 CRLEYLRLSYCEGLVKLPQS-SLSLSSLREIEIYKCSSLVSFPE--VALPSKLKIIEIEGCDALKSLPE-AWMCDTNSSL 127 (495)
Q Consensus 52 ~~L~~L~ls~~~~l~~l~~~-~~~l~~L~~L~l~~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~L 127 (495)
++++.|++++| .+..+|.. +..+++|++|++++| .++.+++ ++.+++|++|++++|. +..+++ .+..+ ++|
T Consensus 51 ~~l~~l~l~~~-~l~~lp~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l--~~L 125 (597)
T 3oja_B 51 NNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNV--PLL 125 (597)
T ss_dssp CCCSEEEESSC-EESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTC--TTC
T ss_pred CCceEEEeeCC-CCCCcCHHHHccCCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHHcCC--CCC
Confidence 45555555554 33444432 344555555555554 3433332 4455555555555554 222322 22222 555
Q ss_pred cEEecccCccccccccc--cCCCCccEEEeccCCCccccccccccccCCCCccCcccCccccceeeecCCCCCcccccCC
Q 011033 128 ETLYIEHCRTLTYLAGV--QLPRSLKRLDILSCDNIRTLTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQN 205 (495)
Q Consensus 128 ~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 205 (495)
++|++++| .++.++.. ..+++|+.|+++++ .+..+. +..+ ..+++|+.|+++++ .++.+
T Consensus 126 ~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~-~~~~-----------~~l~~L~~L~L~~N-~l~~~---- 186 (597)
T 3oja_B 126 TVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNN-NLERIE-DDTF-----------QATTSLQNLQLSSN-RLTHV---- 186 (597)
T ss_dssp CEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCBCC-TTTT-----------TTCTTCCEEECTTS-CCSBC----
T ss_pred CEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCC-cCCCCC-hhhh-----------hcCCcCcEEECcCC-CCCCc----
Confidence 55555553 34444432 34455555555553 222220 1111 11234555555542 23222
Q ss_pred CCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCcccc
Q 011033 206 ELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSF 285 (495)
Q Consensus 206 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l 285 (495)
+...+ ++|+.|++++|.... +...++|+.|++++| .+..++..+ .++|+.|++++| .+...
T Consensus 187 ---------~~~~l-~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n-~l~~~~~~~--~~~L~~L~L~~n-~l~~~ 247 (597)
T 3oja_B 187 ---------DLSLI-PSLFHANVSYNLLST-----LAIPIAVEELDASHN-SINVVRGPV--NVELTILKLQHN-NLTDT 247 (597)
T ss_dssp ---------CGGGC-TTCSEEECCSSCCSE-----EECCTTCSEEECCSS-CCCEEECSC--CSCCCEEECCSS-CCCCC
T ss_pred ---------Chhhh-hhhhhhhcccCcccc-----ccCCchhheeeccCC-ccccccccc--CCCCCEEECCCC-CCCCC
Confidence 11111 445555555443221 122344555555553 233332221 245555555554 22222
Q ss_pred CCCCCCCCCCcEEEecCccccccccccccCCCCcceeEecc-ccccccCC-CCCCccceeEeeccCccchhhhcccccCC
Q 011033 286 PEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSLEED-GLPTNLHSLHIWGNMEIWKSMIERGRGFH 363 (495)
Q Consensus 286 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 363 (495)
..+..+++|+.|++++|......|..+..+++|+.|++++ .+..++.. ..+++|++|++++|... .++. .+.
T Consensus 248 -~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~--~i~~---~~~ 321 (597)
T 3oja_B 248 -AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL--HVER---NQP 321 (597)
T ss_dssp -GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC--CCGG---GHH
T ss_pred -hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCC--ccCc---ccc
Confidence 2233444555555555543333344555555555555555 44444333 22455555555555422 1111 234
Q ss_pred CCCccceEEeecc
Q 011033 364 RFSSLRHLTIEGC 376 (495)
Q Consensus 364 ~l~~L~~L~l~~~ 376 (495)
.+++|+.|++++|
T Consensus 322 ~l~~L~~L~L~~N 334 (597)
T 3oja_B 322 QFDRLENLYLDHN 334 (597)
T ss_dssp HHTTCSEEECCSS
T ss_pred cCCCCCEEECCCC
Confidence 4555555555555
No 41
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.89 E-value=3.4e-21 Score=184.77 Aligned_cols=182 Identities=14% Similarity=0.178 Sum_probs=86.6
Q ss_pred hcCCCCCCcEEeeeCCCCCC--cccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCccccccccccccCCC
Q 011033 240 RLDNNTSLETINISGCENLK--ILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLT 317 (495)
Q Consensus 240 ~~~~~~~L~~L~l~~~~~~~--~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~ 317 (495)
.+..+++|+.|++++|.... ..+..+..+++|++|++++| .++.++.... ++|+.|++++|......+..+..++
T Consensus 140 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~ 216 (330)
T 1xku_A 140 VFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLN 216 (330)
T ss_dssp HHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCT
T ss_pred HhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC-ccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCC
Confidence 34445555555555432211 22334455555555655555 3444444322 4566666666543333344555566
Q ss_pred CcceeEecc-ccccccCC--CCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccC
Q 011033 318 SLQQLTIGG-ELPSLEED--GLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTAL 394 (495)
Q Consensus 318 ~L~~L~l~~-~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 394 (495)
+|++|++++ .+..++.. ..+++|++|++++|.. . .++. .+..+++|++|++++| .+..++...-......
T Consensus 217 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~-~lp~---~l~~l~~L~~L~l~~N--~i~~~~~~~f~~~~~~ 289 (330)
T 1xku_A 217 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL-V-KVPG---GLADHKYIQVVYLHNN--NISAIGSNDFCPPGYN 289 (330)
T ss_dssp TCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCC-S-SCCT---TTTTCSSCCEEECCSS--CCCCCCTTSSSCSSCC
T ss_pred CCCEEECCCCcCceeChhhccCCCCCCEEECCCCcC-c-cCCh---hhccCCCcCEEECCCC--cCCccChhhcCCcccc
Confidence 666666655 44444321 2345566666666542 2 2222 3566667777777776 5555544321000001
Q ss_pred CCCCCCceeeecccccccc---cccccccCCCCCeEeccCC
Q 011033 395 PLPASLTSLRIVDFPNLER---LSSSIVDLQNLTHLNLVDC 432 (495)
Q Consensus 395 ~~~~~L~~L~l~~~~~l~~---l~~~~~~~~~L~~L~l~~c 432 (495)
...++|+.|++++++ ++. -|..+..+++|+.+++++|
T Consensus 290 ~~~~~l~~l~l~~N~-~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 290 TKKASYSGVSLFSNP-VQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp TTSCCCSEEECCSSS-SCGGGSCGGGGTTCCCGGGEEC---
T ss_pred cccccccceEeecCc-ccccccCccccccccceeEEEeccc
Confidence 123456666666633 222 2235555666666666654
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.89 E-value=4.7e-21 Score=183.80 Aligned_cols=283 Identities=14% Similarity=0.213 Sum_probs=159.2
Q ss_pred ccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccc-cccCCCCccEEEEeCCCCCCCC-CC-C
Q 011033 19 CSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQ-SSLSLSSLREIEIYKCSSLVSF-PE-V 95 (495)
Q Consensus 19 ~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~-~~~~l~~L~~L~l~~~~~l~~l-~~-~ 95 (495)
.+++.+++++ ..++.+|.. + +++|++|++++| .+..++. .++.+++|++|++++| .++.+ |. +
T Consensus 31 c~l~~l~~~~-~~l~~lp~~-----~------~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~ 96 (330)
T 1xku_A 31 CHLRVVQCSD-LGLEKVPKD-----L------PPDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINN-KISKISPGAF 96 (330)
T ss_dssp EETTEEECTT-SCCCSCCCS-----C------CTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTT
T ss_pred CCCeEEEecC-CCccccCcc-----C------CCCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHh
Confidence 3788888888 567777664 2 267888999887 4455543 6888888999999887 56655 33 7
Q ss_pred CCCCCCcEEEEeCCCCCCccccccccCCCCCccEEecccCccccccccc--cCCCCccEEEeccCCCcccccc-cccccc
Q 011033 96 ALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGV--QLPRSLKRLDILSCDNIRTLTV-EEGIQS 172 (495)
Q Consensus 96 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~-~~~~~~ 172 (495)
+.+++|++|++++|. +..+|..+. ++|++|+++++ .++.++.. ..+++|+.|+++++ .++...+ +..+
T Consensus 97 ~~l~~L~~L~Ls~n~-l~~l~~~~~----~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~-- 167 (330)
T 1xku_A 97 APLVKLERLYLSKNQ-LKELPEKMP----KTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTN-PLKSSGIENGAF-- 167 (330)
T ss_dssp TTCTTCCEEECCSSC-CSBCCSSCC----TTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSS-CCCGGGBCTTGG--
T ss_pred cCCCCCCEEECCCCc-CCccChhhc----ccccEEECCCC-cccccCHhHhcCCccccEEECCCC-cCCccCcChhhc--
Confidence 788889999998877 667776654 67888888875 45554442 56778888888775 3322100 1111
Q ss_pred CCCCccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEee
Q 011033 173 SSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINI 252 (495)
Q Consensus 173 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 252 (495)
...++|+.|++++ |... .+|..+ .++|++|++
T Consensus 168 ---------~~l~~L~~L~l~~------------------------------------n~l~-~l~~~~--~~~L~~L~l 199 (330)
T 1xku_A 168 ---------QGMKKLSYIRIAD------------------------------------TNIT-TIPQGL--PPSLTELHL 199 (330)
T ss_dssp ---------GGCTTCCEEECCS------------------------------------SCCC-SCCSSC--CTTCSEEEC
T ss_pred ---------cCCCCcCEEECCC------------------------------------Cccc-cCCccc--cccCCEEEC
Confidence 1123455555544 3222 122211 145555555
Q ss_pred eCCCCCCcccccCCCCCCccEEEeeCCCCccccCC-CCCCCCCCcEEEecCccccccccccccCCCCcceeEecc-cccc
Q 011033 253 SGCENLKILPSGLHNLGQLQEIEIWECENLVSFPE-GGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPS 330 (495)
Q Consensus 253 ~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~ 330 (495)
++|......+..+..+++|++|++++| .++.++. .+..+++|+.|++++|. ++.+|..+..+++|++|++++ .+..
T Consensus 200 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~i~~ 277 (330)
T 1xku_A 200 DGNKITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNNISA 277 (330)
T ss_dssp TTSCCCEECTGGGTTCTTCCEEECCSS-CCCEECTTTGGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSSCCCC
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCC-cCceeChhhccCCCCCCEEECCCCc-CccCChhhccCCCcCEEECCCCcCCc
Confidence 553322222344555555555555555 2333322 34445555555555553 345555555555555555555 4444
Q ss_pred ccCCC--------CCCccceeEeeccCccchhhhcccccCCCCCccceEEeecc
Q 011033 331 LEEDG--------LPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGC 376 (495)
Q Consensus 331 ~~~~~--------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 376 (495)
++... ..++++.|++++|+.....+.. ..+..+++++.+++++|
T Consensus 278 ~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~--~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 278 IGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP--STFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCG--GGGTTCCCGGGEEC---
T ss_pred cChhhcCCcccccccccccceEeecCcccccccCc--cccccccceeEEEeccc
Confidence 43321 1346667777777633222222 24566666777776665
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.88 E-value=2.5e-21 Score=185.82 Aligned_cols=282 Identities=16% Similarity=0.176 Sum_probs=158.0
Q ss_pred ccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccc-cccccCCCCccEEEEeCCCCCCCCCC--C
Q 011033 19 CSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKL-PQSSLSLSSLREIEIYKCSSLVSFPE--V 95 (495)
Q Consensus 19 ~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l-~~~~~~l~~L~~L~l~~~~~l~~l~~--~ 95 (495)
.+++.+++++ ..++.+|.+ + +++|++|++++|. +..+ +..+..+++|++|++++| .++.+++ +
T Consensus 33 c~l~~l~~~~-~~l~~ip~~-----~------~~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~ 98 (332)
T 2ft3_A 33 CHLRVVQCSD-LGLKAVPKE-----I------SPDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNN-KISKIHEKAF 98 (332)
T ss_dssp EETTEEECCS-SCCSSCCSC-----C------CTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCCEECGGGS
T ss_pred ccCCEEECCC-CCccccCCC-----C------CCCCeEEECCCCc-CCccCHhHhhCCCCCcEEECCCC-ccCccCHhHh
Confidence 3688888888 467777764 2 2778888888874 4544 456888888888888887 5665532 7
Q ss_pred CCCCCCcEEEEeCCCCCCccccccccCCCCCccEEecccCccccccccc--cCCCCccEEEeccCCCcccccc-cccccc
Q 011033 96 ALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGV--QLPRSLKRLDILSCDNIRTLTV-EEGIQS 172 (495)
Q Consensus 96 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~-~~~~~~ 172 (495)
+.+++|++|++++|. +..+|..+. ++|++|+++++ .++.++.. ..+++|+.|+++++ .++...+ +..+
T Consensus 99 ~~l~~L~~L~L~~n~-l~~l~~~~~----~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~-- 169 (332)
T 2ft3_A 99 SPLRKLQKLYISKNH-LVEIPPNLP----SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGN-PLENSGFEPGAF-- 169 (332)
T ss_dssp TTCTTCCEEECCSSC-CCSCCSSCC----TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSC-CCBGGGSCTTSS--
T ss_pred hCcCCCCEEECCCCc-CCccCcccc----ccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCC-ccccCCCCcccc--
Confidence 788888888888876 567776654 67888888875 45555543 56778888888775 3432100 1111
Q ss_pred CCCCccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEee
Q 011033 173 SSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINI 252 (495)
Q Consensus 173 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 252 (495)
...+++.|+++++ .++.+ +. .++++|++|++++|......+
T Consensus 170 ----------~~l~L~~L~l~~n-~l~~l-------------~~-~~~~~L~~L~l~~n~i~~~~~-------------- 210 (332)
T 2ft3_A 170 ----------DGLKLNYLRISEA-KLTGI-------------PK-DLPETLNELHLDHNKIQAIEL-------------- 210 (332)
T ss_dssp ----------CSCCCSCCBCCSS-BCSSC-------------CS-SSCSSCSCCBCCSSCCCCCCT--------------
T ss_pred ----------cCCccCEEECcCC-CCCcc-------------Cc-cccCCCCEEECCCCcCCccCH--------------
Confidence 0114555555552 22222 11 111344444444443333333
Q ss_pred eCCCCCCcccccCCCCCCccEEEeeCCCCccccCC-CCCCCCCCcEEEecCccccccccccccCCCCcceeEecc-cccc
Q 011033 253 SGCENLKILPSGLHNLGQLQEIEIWECENLVSFPE-GGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPS 330 (495)
Q Consensus 253 ~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~ 330 (495)
..+..+++|++|++++| .++.++. .+..+++|+.|++++|. ++.+|..+..+++|++|++++ .+..
T Consensus 211 ----------~~l~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~l~~ 278 (332)
T 2ft3_A 211 ----------EDLLRYSKLYRLGLGHN-QIRMIENGSLSFLPTLRELHLDNNK-LSRVPAGLPDLKLLQVVYLHTNNITK 278 (332)
T ss_dssp ----------TSSTTCTTCSCCBCCSS-CCCCCCTTGGGGCTTCCEEECCSSC-CCBCCTTGGGCTTCCEEECCSSCCCB
T ss_pred ----------HHhcCCCCCCEEECCCC-cCCcCChhHhhCCCCCCEEECCCCc-CeecChhhhcCccCCEEECCCCCCCc
Confidence 34445555555555554 3333322 33444555555555543 334555555555555555555 4444
Q ss_pred ccCCC--------CCCccceeEeeccCccchhhhcccccCCCCCccceEEeecc
Q 011033 331 LEEDG--------LPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGC 376 (495)
Q Consensus 331 ~~~~~--------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 376 (495)
++... ..++|+.|++.+|+........ ..+..+++|+.+++++|
T Consensus 279 ~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~--~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 279 VGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP--ATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp CCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCG--GGGTTBCCSTTEEC---
T ss_pred cChhHccccccccccccccceEeecCcccccccCc--ccccccchhhhhhcccc
Confidence 33221 1356777777777643222222 24666777777777765
No 44
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=1.8e-21 Score=186.15 Aligned_cols=219 Identities=24% Similarity=0.361 Sum_probs=159.5
Q ss_pred cccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCC-CCCCCCCcEEEEeCCCCCCccccccccCCCCCccEE
Q 011033 52 CRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE-VALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETL 130 (495)
Q Consensus 52 ~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 130 (495)
++++.|++++| .+..+|..++++++|++|++++| .++.+|. ++.+++|++|++++|. +..+|..+..+ ++|++|
T Consensus 81 ~~l~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l--~~L~~L 155 (328)
T 4fcg_A 81 PGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARNP-LRALPASIASL--NRLREL 155 (328)
T ss_dssp TTCCEEEEESS-CCSSCCSCGGGGTTCSEEEEESS-CCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGC--TTCCEE
T ss_pred cceeEEEccCC-CchhcChhhhhCCCCCEEECCCC-CccchhHHHhccCCCCEEECCCCc-cccCcHHHhcC--cCCCEE
Confidence 67777777776 44677776777777777777776 4556665 6677777777777776 44667666655 677777
Q ss_pred ecccCcccccccccc----------CCCCccEEEeccCCCccccccccccccCCCCccCcccCccccceeeecCCCCCcc
Q 011033 131 YIEHCRTLTYLAGVQ----------LPRSLKRLDILSCDNIRTLTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTC 200 (495)
Q Consensus 131 ~l~~~~~l~~~~~~~----------~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 200 (495)
++++|+....+|... .+++|+.|+++++ .++.+ |..+
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~l--p~~l------------------------------ 202 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSL--PASI------------------------------ 202 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCC--CGGG------------------------------
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcc--hHhh------------------------------
Confidence 777766555555431 2455555555553 23222 2111
Q ss_pred cccCCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCC
Q 011033 201 IFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECE 280 (495)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~ 280 (495)
.. .++|++|++++|... .+|..+..+++|+.|++++|.....+|..+..+++|++|++++|.
T Consensus 203 ----------------~~-l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~ 264 (328)
T 4fcg_A 203 ----------------AN-LQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCS 264 (328)
T ss_dssp ----------------GG-CTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCT
T ss_pred ----------------cC-CCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCC
Confidence 11 167888888877655 456668888999999999988888888888899999999999988
Q ss_pred CccccCCCCCCCCCCcEEEecCccccccccccccCCCCcceeEecc
Q 011033 281 NLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG 326 (495)
Q Consensus 281 ~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 326 (495)
..+.+|..+..+++|+.|++++|...+.+|..+..+++|+.+++..
T Consensus 265 ~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 265 NLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp TCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred chhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 8888888888888999999999998899999999999999988866
No 45
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.87 E-value=2.4e-24 Score=223.80 Aligned_cols=408 Identities=14% Similarity=0.142 Sum_probs=217.2
Q ss_pred cccccccccEEecccccccccccc------hhhHHHHhhhhhcccccceeecccccCCcccccccc-CCCCccEEEEeCC
Q 011033 14 LLQDICSLRRLTITSCPKLQSLVA------EEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSL-SLSSLREIEIYKC 86 (495)
Q Consensus 14 ~~~~~~~L~~L~l~~c~~l~~i~~------~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~-~l~~L~~L~l~~~ 86 (495)
.+.+|++|++|++++|..+.++.- ..+..++..+...+++|++|++++|......+..+. .+++|++|++++|
T Consensus 61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence 356789999999999876654321 111124555566679999999999864334444444 6899999999999
Q ss_pred CCCCC--CCC-CCCCCCCcEEEEeCCCCCCcc-cccccc--CCCCCccEEecccCc-cccc--cccc-cCCCCccEEEec
Q 011033 87 SSLVS--FPE-VALPSKLKIIEIEGCDALKSL-PEAWMC--DTNSSLETLYIEHCR-TLTY--LAGV-QLPRSLKRLDIL 156 (495)
Q Consensus 87 ~~l~~--l~~-~~~~~~L~~L~l~~~~~~~~~-~~~~~~--~~~~~L~~L~l~~~~-~l~~--~~~~-~~~~~L~~L~l~ 156 (495)
..++. ++. ...+++|++|++++|. +... +..+.. ..+++|++|++++|. .++. +... ..+++|+.|++.
T Consensus 141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~ 219 (594)
T 2p1m_B 141 EGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLN 219 (594)
T ss_dssp EEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECC
T ss_pred CCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecC
Confidence 65554 333 4478999999999987 3332 222211 134789999999875 1211 2111 346899999999
Q ss_pred cCCCccccccccccccCCCCccCcccCccccceeeecCCCC-CcccccCCCCcccccccccCCCCCCccEE-EeecCCCc
Q 011033 157 SCDNIRTLTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPS-LTCIFSQNELPATLESLEVGNLPPSLKSL-FVWYCPKL 234 (495)
Q Consensus 157 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~L~~L-~l~~~~~~ 234 (495)
+|..+..+ +..+ ...++|+.|.++.+.. +..- .+ ..+.. .... .++|+.+ .+.. ...
T Consensus 220 ~~~~~~~l--~~~~-----------~~~~~L~~L~l~~~~~~~~~~----~~-~~l~~-~l~~-~~~L~~Ls~~~~-~~~ 278 (594)
T 2p1m_B 220 RAVPLEKL--ATLL-----------QRAPQLEELGTGGYTAEVRPD----VY-SGLSV-ALSG-CKELRCLSGFWD-AVP 278 (594)
T ss_dssp TTSCHHHH--HHHH-----------HHCTTCSEEECSBCCCCCCHH----HH-HHHHH-HHHT-CTTCCEEECCBT-CCG
T ss_pred CCCcHHHH--HHHH-----------hcCCcceEcccccccCccchh----hH-HHHHH-HHhc-CCCcccccCCcc-cch
Confidence 98655543 3322 1244677777665432 0000 00 00000 0011 1455555 2221 112
Q ss_pred hhhhhhcCCCCCCcEEeeeCCCCCCc--ccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecC--------cc
Q 011033 235 ESIAERLDNNTSLETINISGCENLKI--LPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYG--------CE 304 (495)
Q Consensus 235 ~~~~~~~~~~~~L~~L~l~~~~~~~~--l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~--------~~ 304 (495)
..++..+..+++|++|++++|. +.. +...+..+++|++|++++|.....++.....+++|+.|++.+ |.
T Consensus 279 ~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~ 357 (594)
T 2p1m_B 279 AYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNV 357 (594)
T ss_dssp GGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSS
T ss_pred hhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCC
Confidence 3334334455666777776655 322 122244566677777766511111222223355677776633 22
Q ss_pred ccccc--cccccCCCCcceeEecc-ccccccC--C-CCCCccceeEee-----ccCccc----h-hhhcccccCCCCCcc
Q 011033 305 RLEAL--PKGLHNLTSLQQLTIGG-ELPSLEE--D-GLPTNLHSLHIW-----GNMEIW----K-SMIERGRGFHRFSSL 368 (495)
Q Consensus 305 ~~~~~--~~~l~~l~~L~~L~l~~-~l~~~~~--~-~~~~~L~~L~l~-----~~~~~~----~-~~~~~~~~~~~l~~L 368 (495)
.++.. ......+++|++|.++. .+..... . ..+++|++|+++ +|..++ + .+.. .+.++++|
T Consensus 358 ~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~---l~~~~~~L 434 (594)
T 2p1m_B 358 ALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGA---IVEHCKDL 434 (594)
T ss_dssp CCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHH---HHHHCTTC
T ss_pred CCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHH---HHhhCCCc
Confidence 22211 11112356677765544 3322111 1 135677777777 344444 1 1111 35566777
Q ss_pred ceEEeeccccccccchhhhccccccCCCCCCCceeeeccccccccc-ccc-cccCCCCCeEeccCCCCCCCCCC---CCC
Q 011033 369 RHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERL-SSS-IVDLQNLTHLNLVDCPKLKYFPE---KGL 443 (495)
Q Consensus 369 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~-~~~~~~L~~L~l~~c~~l~~l~~---~~~ 443 (495)
++|+++++ .....+..-. ..+++|+.|++++|. ++.. ... ...+++|++|++++|+. +.... ...
T Consensus 435 ~~L~L~~~-l~~~~~~~l~-------~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~ 504 (594)
T 2p1m_B 435 RRLSLSGL-LTDKVFEYIG-------TYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASK 504 (594)
T ss_dssp CEEECCSS-CCHHHHHHHH-------HHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGG
T ss_pred cEEeecCc-ccHHHHHHHH-------HhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHh
Confidence 77777552 1111111111 124577778877754 3321 112 25577788888888763 32111 122
Q ss_pred ccccceeeccCCch
Q 011033 444 PSSLLQLSIYRCPL 457 (495)
Q Consensus 444 ~~~L~~L~l~~c~~ 457 (495)
+++|++|++++|+.
T Consensus 505 l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 505 LETMRSLWMSSCSV 518 (594)
T ss_dssp GGGSSEEEEESSCC
T ss_pred CCCCCEEeeeCCCC
Confidence 57788888888865
No 46
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.87 E-value=2.9e-24 Score=223.12 Aligned_cols=403 Identities=14% Similarity=0.064 Sum_probs=238.0
Q ss_pred cccccccccEEecccccccccc---cc---hhhHHHHhhhhhcccccceeecccccCCccccccccC-CC-CccEEEEeC
Q 011033 14 LLQDICSLRRLTITSCPKLQSL---VA---EEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLS-LS-SLREIEIYK 85 (495)
Q Consensus 14 ~~~~~~~L~~L~l~~c~~l~~i---~~---~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~-l~-~L~~L~l~~ 85 (495)
.+.++++|++|++++|..+... +. +....++..+...+++|++|++++|......+..+.. ++ +|++|++++
T Consensus 68 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~ 147 (592)
T 3ogk_B 68 LSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDK 147 (592)
T ss_dssp HHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEES
T ss_pred HHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcC
Confidence 3567999999999987654321 10 0001245555556699999999998443334444544 34 499999999
Q ss_pred CCCCCC--CCC-CCCCCCCcEEEEeCCCCCCc----cccccccCCCCCccEEecccCcccc-----ccccc-cCCCCccE
Q 011033 86 CSSLVS--FPE-VALPSKLKIIEIEGCDALKS----LPEAWMCDTNSSLETLYIEHCRTLT-----YLAGV-QLPRSLKR 152 (495)
Q Consensus 86 ~~~l~~--l~~-~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~l~-----~~~~~-~~~~~L~~ 152 (495)
|..+.. ++. ...+++|++|++++|..... ++...... ++|++|+++++. ++ .++.. ..+++|+.
T Consensus 148 ~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~--~~L~~L~L~~n~-~~~~~~~~l~~~~~~~~~L~~ 224 (592)
T 3ogk_B 148 CSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHN--TSLEVLNFYMTE-FAKISPKDLETIARNCRSLVS 224 (592)
T ss_dssp CEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHC--CCCCEEECTTCC-CSSCCHHHHHHHHHHCTTCCE
T ss_pred CCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcC--CCccEEEeeccC-CCccCHHHHHHHHhhCCCCcE
Confidence 863322 111 34689999999999863222 22222223 889999998854 33 22222 45789999
Q ss_pred EEeccCCCccccccccccccCCCCccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCC
Q 011033 153 LDILSCDNIRTLTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCP 232 (495)
Q Consensus 153 L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 232 (495)
|++.+| .+..+ +..+ ...++|+.+.++.+...... ...+ .....+++|+.+.++++
T Consensus 225 L~L~~~-~~~~l--~~~~-----------~~~~~L~~L~l~~~~~~~~~---~~~~------~~l~~~~~L~~L~l~~~- 280 (592)
T 3ogk_B 225 VKVGDF-EILEL--VGFF-----------KAAANLEEFCGGSLNEDIGM---PEKY------MNLVFPRKLCRLGLSYM- 280 (592)
T ss_dssp EECSSC-BGGGG--HHHH-----------HHCTTCCEEEECBCCCCTTC---TTSS------SCCCCCTTCCEEEETTC-
T ss_pred EeccCc-cHHHH--HHHH-----------hhhhHHHhhcccccccccch---HHHH------HHhhccccccccCcccc-
Confidence 999986 34333 3222 12456888888753221110 0000 11122367888888753
Q ss_pred CchhhhhhcCCCCCCcEEeeeCCCCCCc--ccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecC--------
Q 011033 233 KLESIAERLDNNTSLETINISGCENLKI--LPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYG-------- 302 (495)
Q Consensus 233 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~--l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~-------- 302 (495)
....++..+..+++|++|++++|. +.. +...+..+++|++|+++++.....++.....+++|++|++++
T Consensus 281 ~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~ 359 (592)
T 3ogk_B 281 GPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGME 359 (592)
T ss_dssp CTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTS
T ss_pred chhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccc
Confidence 344566667778888888888866 332 223356788888888874322223333445567888888884
Q ss_pred --cccccc--ccccccCCCCcceeEecc-ccccc--cCC-CCCCccceeEeec---cCccchh-----hhcccccCCCCC
Q 011033 303 --CERLEA--LPKGLHNLTSLQQLTIGG-ELPSL--EED-GLPTNLHSLHIWG---NMEIWKS-----MIERGRGFHRFS 366 (495)
Q Consensus 303 --~~~~~~--~~~~l~~l~~L~~L~l~~-~l~~~--~~~-~~~~~L~~L~l~~---~~~~~~~-----~~~~~~~~~~l~ 366 (495)
|..++. ++.....+++|++|+++. .+..- ... ..+++|++|++++ |..+++. +.. .+.+++
T Consensus 360 ~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~---~~~~~~ 436 (592)
T 3ogk_B 360 DEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRS---LLIGCK 436 (592)
T ss_dssp STTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHH---HHHHCT
T ss_pred cccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHH---HHHhCC
Confidence 555543 222344578888888855 33221 111 2267888888874 3344431 222 356678
Q ss_pred ccceEEeecccccccc--chhhhccccccCCCCCCCceeeecccccccc--cccccccCCCCCeEeccCCCCCCC--CCC
Q 011033 367 SLRHLTIEGCDDDMVS--FPLEDKRLGTALPLPASLTSLRIVDFPNLER--LSSSIVDLQNLTHLNLVDCPKLKY--FPE 440 (495)
Q Consensus 367 ~L~~L~l~~~~~~~~~--~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--l~~~~~~~~~L~~L~l~~c~~l~~--l~~ 440 (495)
+|++|++++|...+.. +.... ..+++|+.|++++|. ++. ++..+..+++|++|++++|+ ++. ++.
T Consensus 437 ~L~~L~L~~~~~~l~~~~~~~~~-------~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~ 507 (592)
T 3ogk_B 437 KLRRFAFYLRQGGLTDLGLSYIG-------QYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAA 507 (592)
T ss_dssp TCCEEEEECCGGGCCHHHHHHHH-------HSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHH
T ss_pred CCCEEEEecCCCCccHHHHHHHH-------HhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHH
Confidence 8888888775221221 11111 135678888888754 443 34455678888888888877 433 111
Q ss_pred C-CCccccceeeccCCc
Q 011033 441 K-GLPSSLLQLSIYRCP 456 (495)
Q Consensus 441 ~-~~~~~L~~L~l~~c~ 456 (495)
. ..+++|++|++++|.
T Consensus 508 ~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 508 AVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HHHHCSSCCEEEEESCB
T ss_pred HHHhcCccCeeECcCCc
Confidence 1 126788888888887
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.87 E-value=8e-21 Score=182.30 Aligned_cols=182 Identities=14% Similarity=0.164 Sum_probs=82.6
Q ss_pred cCCCCCCcEEeeeCCCCC--CcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCccccccccccccCCCC
Q 011033 241 LDNNTSLETINISGCENL--KILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTS 318 (495)
Q Consensus 241 ~~~~~~L~~L~l~~~~~~--~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~ 318 (495)
+..+++|+.|++++|... ...+..+..+ +|+.|++++| .++.+|.... ++|+.|++++|......+..+..+++
T Consensus 143 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n-~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~ 218 (332)
T 2ft3_A 143 FSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA-KLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSK 218 (332)
T ss_dssp GSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSS-BCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTT
T ss_pred hCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCC-CCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCC
Confidence 444445555555443221 1223333333 5555555554 3444443322 35555555555433322344555555
Q ss_pred cceeEecc-ccccccCC--CCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccCC
Q 011033 319 LQQLTIGG-ELPSLEED--GLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALP 395 (495)
Q Consensus 319 L~~L~l~~-~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 395 (495)
|++|++++ .+..++.. ..+++|++|++++|.. . .++. .+..+++|+.|++++| .+..++...-.......
T Consensus 219 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~-~lp~---~l~~l~~L~~L~l~~N--~l~~~~~~~~~~~~~~~ 291 (332)
T 2ft3_A 219 LYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL-S-RVPA---GLPDLKLLQVVYLHTN--NITKVGVNDFCPVGFGV 291 (332)
T ss_dssp CSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCC-C-BCCT---TGGGCTTCCEEECCSS--CCCBCCTTSSSCSSCCS
T ss_pred CCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcC-e-ecCh---hhhcCccCCEEECCCC--CCCccChhHcccccccc
Confidence 55555555 44444331 2345555555555542 2 1222 3556666777777766 55554442200000001
Q ss_pred CCCCCceeeecccccc--cccccccccCCCCCeEeccCCC
Q 011033 396 LPASLTSLRIVDFPNL--ERLSSSIVDLQNLTHLNLVDCP 433 (495)
Q Consensus 396 ~~~~L~~L~l~~~~~l--~~l~~~~~~~~~L~~L~l~~c~ 433 (495)
..++|+.|++++++.. +..+..+..+++|+.+++++|+
T Consensus 292 ~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 292 KRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 1345666666664322 2223355666666666666653
No 48
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=2e-21 Score=185.73 Aligned_cols=223 Identities=22% Similarity=0.342 Sum_probs=181.0
Q ss_pred cccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCC-CC
Q 011033 18 ICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE-VA 96 (495)
Q Consensus 18 ~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~-~~ 96 (495)
.+++++|++++ +.++.+++. +.++ ++|++|++++|. +..+|..++.+++|++|++++| .++.+|. ++
T Consensus 80 ~~~l~~L~L~~-n~l~~lp~~-----l~~l----~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~ 147 (328)
T 4fcg_A 80 QPGRVALELRS-VPLPQFPDQ-----AFRL----SHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARN-PLRALPASIA 147 (328)
T ss_dssp STTCCEEEEES-SCCSSCCSC-----GGGG----TTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGG
T ss_pred ccceeEEEccC-CCchhcChh-----hhhC----CCCCEEECCCCC-ccchhHHHhccCCCCEEECCCC-ccccCcHHHh
Confidence 47899999999 678888885 7778 999999999984 5699988999999999999998 6778875 88
Q ss_pred CCCCCcEEEEeCCCCCCcccccccc-------CCCCCccEEecccCccccccccc-cCCCCccEEEeccCCCcccccccc
Q 011033 97 LPSKLKIIEIEGCDALKSLPEAWMC-------DTNSSLETLYIEHCRTLTYLAGV-QLPRSLKRLDILSCDNIRTLTVEE 168 (495)
Q Consensus 97 ~~~~L~~L~l~~~~~~~~~~~~~~~-------~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~ 168 (495)
.+++|++|++++|...+.+|..+.. ..+++|++|++++| .++.+|.. ..+++|+.|+++++ .++.+ +.
T Consensus 148 ~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N-~l~~l--~~ 223 (328)
T 4fcg_A 148 SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNS-PLSAL--GP 223 (328)
T ss_dssp GCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESS-CCCCC--CG
T ss_pred cCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCC-CCCcC--ch
Confidence 9999999999999888888887653 01389999999996 56677654 66789999999885 44433 22
Q ss_pred ccccCCCCccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCc
Q 011033 169 GIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLE 248 (495)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 248 (495)
.+ .. .++|+.|++++|...+.+|..+..+++|+
T Consensus 224 ~l----------------------------~~-------------------l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~ 256 (328)
T 4fcg_A 224 AI----------------------------HH-------------------LPKLEELDLRGCTALRNYPPIFGGRAPLK 256 (328)
T ss_dssp GG----------------------------GG-------------------CTTCCEEECTTCTTCCBCCCCTTCCCCCC
T ss_pred hh----------------------------cc-------------------CCCCCEEECcCCcchhhhHHHhcCCCCCC
Confidence 11 01 15677888887777777788888888899
Q ss_pred EEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCc
Q 011033 249 TINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGC 303 (495)
Q Consensus 249 ~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~ 303 (495)
.|++++|.....+|..+..+++|++|++++|...+.+|..+..+++++.+++..+
T Consensus 257 ~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 257 RLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp EEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred EEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 9999888888888888888889999999988888888888888888888888754
No 49
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.86 E-value=1.5e-21 Score=185.44 Aligned_cols=248 Identities=17% Similarity=0.087 Sum_probs=152.8
Q ss_pred cccceeecccccCCc--cccccccCCCCccEEEEeC-CCCCCCCCC-CCCCCCCcEEEEeCCCCCCccccccccCCCCCc
Q 011033 52 CRLEYLRLSYCEGLV--KLPQSSLSLSSLREIEIYK-CSSLVSFPE-VALPSKLKIIEIEGCDALKSLPEAWMCDTNSSL 127 (495)
Q Consensus 52 ~~L~~L~ls~~~~l~--~l~~~~~~l~~L~~L~l~~-~~~l~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 127 (495)
.+++.|++++|...+ .+|..++.+++|++|++++ |.....+|. ++.+++|++|++++|.....+|..+... ++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l--~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI--KTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGC--TTC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCC--CCC
Confidence 467777777775544 5677777777777777774 433335554 6777777777777777444666666655 777
Q ss_pred cEEecccCccccccccc-cCCCCccEEEeccCCCcc-ccccccccccCCCCccCcccCccccceeeecCCCCCcccccCC
Q 011033 128 ETLYIEHCRTLTYLAGV-QLPRSLKRLDILSCDNIR-TLTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQN 205 (495)
Q Consensus 128 ~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 205 (495)
++|++++|.....+|.. ..+++|+.|+++++ .++ .+ +..+
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~--p~~l----------------------------------- 169 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGN-RISGAI--PDSY----------------------------------- 169 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSS-CCEEEC--CGGG-----------------------------------
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCC-cccCcC--CHHH-----------------------------------
Confidence 77777775322234432 45666777776664 232 22 2211
Q ss_pred CCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCcccc
Q 011033 206 ELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSF 285 (495)
Q Consensus 206 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l 285 (495)
..+.+.|+.|++++|.....+|..+..++ |+.|++++|......+..+..+++|+.|++++|. +...
T Consensus 170 -----------~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~ 236 (313)
T 1ogq_A 170 -----------GSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS-LAFD 236 (313)
T ss_dssp -----------GCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE-ECCB
T ss_pred -----------hhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCc-eeee
Confidence 11213566666666655555666666665 7777777754444455666777777777777763 3322
Q ss_pred CCCCCCCCCCcEEEecCccccccccccccCCCCcceeEecc-ccc-cccCCCCCCccceeEeeccCccc
Q 011033 286 PEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELP-SLEEDGLPTNLHSLHIWGNMEIW 352 (495)
Q Consensus 286 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~-~~~~~~~~~~L~~L~l~~~~~~~ 352 (495)
+..+..+++|+.|++++|.....+|..+..+++|++|++++ .+. .+|....+++|+.+++++|+.+.
T Consensus 237 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 237 LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp GGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEE
T ss_pred cCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCcc
Confidence 22345566777777777765556677777777777777777 443 44555556677777777776443
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.86 E-value=1.8e-22 Score=209.54 Aligned_cols=391 Identities=12% Similarity=0.057 Sum_probs=248.5
Q ss_pred ccccccEEecccccccccccchhhHHHHhhhhhcccc-cceeecccccCCc--cccccccCCCCccEEEEeCCCCCCCCC
Q 011033 17 DICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCR-LEYLRLSYCEGLV--KLPQSSLSLSSLREIEIYKCSSLVSFP 93 (495)
Q Consensus 17 ~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~-L~~L~ls~~~~l~--~l~~~~~~l~~L~~L~l~~~~~l~~l~ 93 (495)
.+++|++|++++| .++.. .+..++..|++ |++|++++|..+. .++.....+++|++|++++| .+...+
T Consensus 110 ~~~~L~~L~L~~~-~i~~~-------~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~~~ 180 (592)
T 3ogk_B 110 NLRQLKSVHFRRM-IVSDL-------DLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEES-SFSEKD 180 (592)
T ss_dssp HCTTCCEEEEESC-BCCHH-------HHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTC-EEECCC
T ss_pred hCCCCCeEEeecc-EecHH-------HHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccc-cccCcc
Confidence 7899999999996 45432 23333333466 9999999986433 23444558999999999998 444332
Q ss_pred C------CCCCCCCcEEEEeCCCCC----CccccccccCCCCCccEEecccCccccccccc-cCCCCccEEEeccCCCcc
Q 011033 94 E------VALPSKLKIIEIEGCDAL----KSLPEAWMCDTNSSLETLYIEHCRTLTYLAGV-QLPRSLKRLDILSCDNIR 162 (495)
Q Consensus 94 ~------~~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~ 162 (495)
. ...+++|++|+++++... ..++..+... ++|++|++.+|. +..++.. ..+++|+.|.++++....
T Consensus 181 ~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~--~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~ 257 (592)
T 3ogk_B 181 GKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC--RSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDI 257 (592)
T ss_dssp SHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC--TTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCT
T ss_pred hhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC--CCCcEEeccCcc-HHHHHHHHhhhhHHHhhccccccccc
Confidence 1 346899999999998743 2333333344 899999999964 4444433 567899999998743321
Q ss_pred ccccccccccCCCCccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchhh-hhhc
Q 011033 163 TLTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESI-AERL 241 (495)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~ 241 (495)
.. ... .......++++.+.+.++.. .. ++. .....++|++|++++|...... ...+
T Consensus 258 ~~--~~~--------~~~l~~~~~L~~L~l~~~~~-~~------l~~------~~~~~~~L~~L~Ls~~~l~~~~~~~~~ 314 (592)
T 3ogk_B 258 GM--PEK--------YMNLVFPRKLCRLGLSYMGP-NE------MPI------LFPFAAQIRKLDLLYALLETEDHCTLI 314 (592)
T ss_dssp TC--TTS--------SSCCCCCTTCCEEEETTCCT-TT------GGG------GGGGGGGCCEEEETTCCCCHHHHHHHH
T ss_pred ch--HHH--------HHHhhccccccccCccccch-hH------HHH------HHhhcCCCcEEecCCCcCCHHHHHHHH
Confidence 11 100 01112245688887766321 11 111 1112378999999998844333 3457
Q ss_pred CCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeC----------CCCccc--cCCCCCCCCCCcEEEecCccccccc
Q 011033 242 DNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWE----------CENLVS--FPEGGLPCAKLSKLRIYGCERLEAL 309 (495)
Q Consensus 242 ~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~----------~~~l~~--l~~~~~~~~~L~~L~l~~~~~~~~~ 309 (495)
..+++|+.|++.++.....++.....+++|++|++++ |..++. +......+++|+.|++..+......
T Consensus 315 ~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~ 394 (592)
T 3ogk_B 315 QKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNES 394 (592)
T ss_dssp TTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHH
T ss_pred HhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHH
Confidence 8899999999984322223344446689999999994 545543 2223445789999999554332222
Q ss_pred ccccc-CCCCcceeEecc-----ccccccC-------CCCCCccceeEeeccCc-cchhhhcccccCCCCCccceEEeec
Q 011033 310 PKGLH-NLTSLQQLTIGG-----ELPSLEE-------DGLPTNLHSLHIWGNME-IWKSMIERGRGFHRFSSLRHLTIEG 375 (495)
Q Consensus 310 ~~~l~-~l~~L~~L~l~~-----~l~~~~~-------~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~l~~L~~L~l~~ 375 (495)
+..+. .+++|++|++++ .+...|. ...+++|++|+++.|.. +.+.... .....+++|++|++++
T Consensus 395 ~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~--~~~~~~~~L~~L~L~~ 472 (592)
T 3ogk_B 395 LESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLS--YIGQYSPNVRWMLLGY 472 (592)
T ss_dssp HHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHH--HHHHSCTTCCEEEECS
T ss_pred HHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHH--HHHHhCccceEeeccC
Confidence 33444 388999999962 4444321 12378999999987653 3444333 2345589999999999
Q ss_pred ccccccc--chhhhccccccCCCCCCCceeeecccccccc--cccccccCCCCCeEeccCCCCCCCCCCCC---Cccccc
Q 011033 376 CDDDMVS--FPLEDKRLGTALPLPASLTSLRIVDFPNLER--LSSSIVDLQNLTHLNLVDCPKLKYFPEKG---LPSSLL 448 (495)
Q Consensus 376 ~~~~~~~--~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--l~~~~~~~~~L~~L~l~~c~~l~~l~~~~---~~~~L~ 448 (495)
| .+.. ++... ..+++|++|++++|+ ++. ++.....+++|++|++++|+ ++...... .+|.+.
T Consensus 473 n--~l~~~~~~~~~-------~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~ 541 (592)
T 3ogk_B 473 V--GESDEGLMEFS-------RGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYWN 541 (592)
T ss_dssp C--CSSHHHHHHHH-------TCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTEE
T ss_pred C--CCCHHHHHHHH-------hcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCHHHHHHHHHhCCCcE
Confidence 8 4432 23222 245799999999987 543 44456789999999999987 66543321 245555
Q ss_pred eeeccCC
Q 011033 449 QLSIYRC 455 (495)
Q Consensus 449 ~L~l~~c 455 (495)
...+...
T Consensus 542 ~~~~~~~ 548 (592)
T 3ogk_B 542 IELIPSR 548 (592)
T ss_dssp EEEECCC
T ss_pred EEEecCc
Confidence 5555543
No 51
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.85 E-value=4e-23 Score=207.79 Aligned_cols=373 Identities=19% Similarity=0.185 Sum_probs=217.2
Q ss_pred ccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCc----cccccccCCCCccEEEEeCCCCCCCCCC
Q 011033 19 CSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLV----KLPQSSLSLSSLREIEIYKCSSLVSFPE 94 (495)
Q Consensus 19 ~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~----~l~~~~~~l~~L~~L~l~~~~~l~~l~~ 94 (495)
+.|++|++++ +.++.... ...+..+ ++|++|++++|.... .++..+..+++|++|++++| .+++...
T Consensus 3 ~~l~~L~Ls~-~~l~~~~~---~~~~~~~----~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~ 73 (461)
T 1z7x_W 3 LDIQSLDIQC-EELSDARW---AELLPLL----QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN-ELGDVGV 73 (461)
T ss_dssp EEEEEEEEES-CCCCHHHH---HHHHHHH----TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHH
T ss_pred ccceehhhhh-cccCchhH---HHHHhhc----CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHH
Confidence 5789999988 45654332 1345666 999999999985332 45666788899999999997 4543211
Q ss_pred ---CCCCC----CCcEEEEeCCCCCC----ccccccccCCCCCccEEecccCcccccc-----ccc--cCCCCccEEEec
Q 011033 95 ---VALPS----KLKIIEIEGCDALK----SLPEAWMCDTNSSLETLYIEHCRTLTYL-----AGV--QLPRSLKRLDIL 156 (495)
Q Consensus 95 ---~~~~~----~L~~L~l~~~~~~~----~~~~~~~~~~~~~L~~L~l~~~~~l~~~-----~~~--~~~~~L~~L~l~ 156 (495)
...+. +|++|++++|.... .++..+... ++|++|++++|. ++.. ... ...++|+.|+++
T Consensus 74 ~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~--~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~ 150 (461)
T 1z7x_W 74 HCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTL--PTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLE 150 (461)
T ss_dssp HHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSC--TTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccC--CceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECC
Confidence 22233 69999999987332 345555444 788999988864 4321 111 223467777777
Q ss_pred cCCCccccccccccccCCCCccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchh
Q 011033 157 SCDNIRTLTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLES 236 (495)
Q Consensus 157 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 236 (495)
+| .++.... ..+. . .... .++|++|++++|...+.
T Consensus 151 ~n-~l~~~~~-~~l~-------------------------------------~-----~l~~-~~~L~~L~L~~n~i~~~ 185 (461)
T 1z7x_W 151 YC-SLSAASC-EPLA-------------------------------------S-----VLRA-KPDFKELTVSNNDINEA 185 (461)
T ss_dssp TS-CCBGGGH-HHHH-------------------------------------H-----HHHH-CTTCCEEECCSSBCHHH
T ss_pred CC-CCCHHHH-HHHH-------------------------------------H-----HHhh-CCCCCEEECcCCCcchH
Confidence 75 3332100 0000 0 0000 14566666666654333
Q ss_pred hhhhcC-----CCCCCcEEeeeCCCCCCc----ccccCCCCCCccEEEeeCCCCcccc------CCCCCCCCCCcEEEec
Q 011033 237 IAERLD-----NNTSLETINISGCENLKI----LPSGLHNLGQLQEIEIWECENLVSF------PEGGLPCAKLSKLRIY 301 (495)
Q Consensus 237 ~~~~~~-----~~~~L~~L~l~~~~~~~~----l~~~~~~l~~L~~L~l~~~~~l~~l------~~~~~~~~~L~~L~l~ 301 (495)
.+..+. ..++|++|++++|..... ++..+..+++|++|++++| .++.. +.....+++|+.|+++
T Consensus 186 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~L~ 264 (461)
T 1z7x_W 186 GVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIW 264 (461)
T ss_dssp HHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCC-cCChHHHHHHHHHHhcCCCCceEEECc
Confidence 222222 345777777776533221 3445556677777777776 33321 1122245677777777
Q ss_pred Ccccccc-----ccccccCCCCcceeEecc-cccc-----ccCC--CCCCccceeEeeccCccchhhhcccccCCCCCcc
Q 011033 302 GCERLEA-----LPKGLHNLTSLQQLTIGG-ELPS-----LEED--GLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSL 368 (495)
Q Consensus 302 ~~~~~~~-----~~~~l~~l~~L~~L~l~~-~l~~-----~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L 368 (495)
+|. ++. ++..+..+++|++|++++ .+.. +... ...++|++|++++|.............+..+++|
T Consensus 265 ~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 343 (461)
T 1z7x_W 265 ECG-ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFL 343 (461)
T ss_dssp TSC-CCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSC
T ss_pred CCC-CCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCc
Confidence 774 333 455666677777887777 4332 1111 1236899999999874332211111256778999
Q ss_pred ceEEeeccccccccchhhhccccccCC-CCCCCceeeeccccccc-----ccccccccCCCCCeEeccCCCCCCCCCCC-
Q 011033 369 RHLTIEGCDDDMVSFPLEDKRLGTALP-LPASLTSLRIVDFPNLE-----RLSSSIVDLQNLTHLNLVDCPKLKYFPEK- 441 (495)
Q Consensus 369 ~~L~l~~~~~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~l~-----~l~~~~~~~~~L~~L~l~~c~~l~~l~~~- 441 (495)
++|++++| .+....... +...+. ..++|+.|++++| .++ .++..+..+++|++|++++|+ ++.....
T Consensus 344 ~~L~Ls~n--~i~~~~~~~--l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N~-i~~~~~~~ 417 (461)
T 1z7x_W 344 LELQISNN--RLEDAGVRE--LCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNNC-LGDAGILQ 417 (461)
T ss_dssp CEEECCSS--BCHHHHHHH--HHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSSS-CCHHHHHH
T ss_pred cEEEccCC--ccccccHHH--HHHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCCC-CCHHHHHH
Confidence 99999998 444322110 000001 2468999999995 555 677788889999999999964 5542110
Q ss_pred ------CCccccceeeccCCc
Q 011033 442 ------GLPSSLLQLSIYRCP 456 (495)
Q Consensus 442 ------~~~~~L~~L~l~~c~ 456 (495)
.....|+.|.+.++.
T Consensus 418 l~~~l~~~~~~L~~L~~~~~~ 438 (461)
T 1z7x_W 418 LVESVRQPGCLLEQLVLYDIY 438 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTCC
T ss_pred HHHHhccCCcchhheeecccc
Confidence 112356667666653
No 52
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.84 E-value=1.3e-20 Score=179.12 Aligned_cols=243 Identities=12% Similarity=0.104 Sum_probs=182.1
Q ss_pred ccccEEecccccccc---cccchhhHHHHhhhhhcccccceeeccc-ccCCccccccccCCCCccEEEEeCCCCCCCCCC
Q 011033 19 CSLRRLTITSCPKLQ---SLVAEEEKDQQQQLCELSCRLEYLRLSY-CEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE 94 (495)
Q Consensus 19 ~~L~~L~l~~c~~l~---~i~~~~~~~~~~~l~~~~~~L~~L~ls~-~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~ 94 (495)
.++++|+++++ .++ .++. .+.++ ++|++|++++ |...+.+|..++++++|++|++++|.....+|.
T Consensus 50 ~~l~~L~L~~~-~l~~~~~~~~-----~l~~l----~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~ 119 (313)
T 1ogq_A 50 YRVNNLDLSGL-NLPKPYPIPS-----SLANL----PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD 119 (313)
T ss_dssp CCEEEEEEECC-CCSSCEECCG-----GGGGC----TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCG
T ss_pred ceEEEEECCCC-CccCCcccCh-----hHhCC----CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCH
Confidence 57999999994 566 4665 48888 9999999995 655568898899999999999999843336665
Q ss_pred -CCCCCCCcEEEEeCCCCCCccccccccCCCCCccEEecccCccccccccc-cCCC-CccEEEeccCCCcc-cccccccc
Q 011033 95 -VALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGV-QLPR-SLKRLDILSCDNIR-TLTVEEGI 170 (495)
Q Consensus 95 -~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~-~L~~L~l~~~~~l~-~~~~~~~~ 170 (495)
+..+++|++|++++|.....+|..+... ++|++|++++|..-..+|.. ..++ +|+.|+++++ .+. .+ +..+
T Consensus 120 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l--~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N-~l~~~~--~~~~ 194 (313)
T 1ogq_A 120 FLSQIKTLVTLDFSYNALSGTLPPSISSL--PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN-RLTGKI--PPTF 194 (313)
T ss_dssp GGGGCTTCCEEECCSSEEESCCCGGGGGC--TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS-EEEEEC--CGGG
T ss_pred HHhCCCCCCEEeCCCCccCCcCChHHhcC--CCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCC-eeeccC--ChHH
Confidence 8899999999999998655788888776 89999999996533255544 4455 8888988875 332 22 2211
Q ss_pred ccCCCCccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEE
Q 011033 171 QSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETI 250 (495)
Q Consensus 171 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 250 (495)
..+ + |+.|++++|......+..+..+++|+.|
T Consensus 195 ----------------------------------------------~~l-~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 226 (313)
T 1ogq_A 195 ----------------------------------------------ANL-N-LAFVDLSRNMLEGDASVLFGSDKNTQKI 226 (313)
T ss_dssp ----------------------------------------------GGC-C-CSEEECCSSEEEECCGGGCCTTSCCSEE
T ss_pred ----------------------------------------------hCC-c-ccEEECcCCcccCcCCHHHhcCCCCCEE
Confidence 011 2 7777777777666677778888888888
Q ss_pred eeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCccccccccccccCCCCcceeEecc
Q 011033 251 NISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG 326 (495)
Q Consensus 251 ~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 326 (495)
++++|......+ .+..+++|++|++++|.....+|..+..+++|+.|++++|.....+|.. ..+++|+.+++++
T Consensus 227 ~L~~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~ 300 (313)
T 1ogq_A 227 HLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYAN 300 (313)
T ss_dssp ECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCS
T ss_pred ECCCCceeeecC-cccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcC
Confidence 888865433333 3777888889998888544467777777888889999888766677764 7788888888877
No 53
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.82 E-value=2.8e-18 Score=176.55 Aligned_cols=253 Identities=28% Similarity=0.393 Sum_probs=143.5
Q ss_pred ccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCCCCCCCCCcEEEEeCCCCCCccccccccCCCCCccEEec
Q 011033 53 RLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYI 132 (495)
Q Consensus 53 ~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 132 (495)
+++.|++++| .+..+|..+. ++|++|++++| .++.+|. .+++|++|++++|. +..+|.. . ++|++|++
T Consensus 41 ~l~~L~ls~n-~L~~lp~~l~--~~L~~L~L~~N-~l~~lp~--~l~~L~~L~Ls~N~-l~~lp~~---l--~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGES-GLTTLPDCLP--AHITTLVIPDN-NLTSLPA--LPPELRTLEVSGNQ-LTSLPVL---P--PGLLELSI 108 (622)
T ss_dssp CCCEEECCSS-CCSCCCSCCC--TTCSEEEECSC-CCSCCCC--CCTTCCEEEECSCC-CSCCCCC---C--TTCCEEEE
T ss_pred CCcEEEecCC-CcCccChhhC--CCCcEEEecCC-CCCCCCC--cCCCCCEEEcCCCc-CCcCCCC---C--CCCCEEEC
Confidence 4666666665 3455555443 56666666665 4555554 45666666666655 4445541 2 55666666
Q ss_pred ccCccccccccccCCCCccEEEeccCCCccccccccccccCCCCccCcccCccccceeeecCCCCCcccccCCCCccccc
Q 011033 133 EHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLE 212 (495)
Q Consensus 133 ~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 212 (495)
++| .++.++. .+++|+.|+++++ .++.+ +.. .++|+.|+++++ .++.+
T Consensus 109 s~N-~l~~l~~--~l~~L~~L~L~~N-~l~~l--p~~--------------l~~L~~L~Ls~N-~l~~l----------- 156 (622)
T 3g06_A 109 FSN-PLTHLPA--LPSGLCKLWIFGN-QLTSL--PVL--------------PPGLQELSVSDN-QLASL----------- 156 (622)
T ss_dssp CSC-CCCCCCC--CCTTCCEEECCSS-CCSCC--CCC--------------CTTCCEEECCSS-CCSCC-----------
T ss_pred cCC-cCCCCCC--CCCCcCEEECCCC-CCCcC--CCC--------------CCCCCEEECcCC-cCCCc-----------
Confidence 653 3444444 4556666666653 34333 221 134556665553 33322
Q ss_pred ccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCC
Q 011033 213 SLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPC 292 (495)
Q Consensus 213 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~ 292 (495)
+ ..+++|+.|++++|.... +| ..+++|+.|++++| .+..+|.. +++|+.|++++| .++.++.. +
T Consensus 157 --~--~~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N-~l~~l~~~---~~~L~~L~L~~N-~l~~l~~~---~ 220 (622)
T 3g06_A 157 --P--ALPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDN-QLASLPTL---PSELYKLWAYNN-RLTSLPAL---P 220 (622)
T ss_dssp --C--CCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSS-CCSSCCCC---C
T ss_pred --C--CccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCC-CCCCCCCc---cchhhEEECcCC-cccccCCC---C
Confidence 1 123566667666554332 33 34567777777764 34445432 367777777776 45555542 3
Q ss_pred CCCcEEEecCccccccccccccCCCCcceeEecc-ccccccCCCCCCccceeEeeccCccchhhhcccccCCCCCccceE
Q 011033 293 AKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSLEEDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHL 371 (495)
Q Consensus 293 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L 371 (495)
++|+.|++++|. ++.+| ..+++|+.|++++ .+..+|. .+++|+.|++++|. +. .++. .+.++++|+.|
T Consensus 221 ~~L~~L~Ls~N~-L~~lp---~~l~~L~~L~Ls~N~L~~lp~--~~~~L~~L~Ls~N~-L~-~lp~---~l~~l~~L~~L 289 (622)
T 3g06_A 221 SGLKELIVSGNR-LTSLP---VLPSELKELMVSGNRLTSLPM--LPSGLLSLSVYRNQ-LT-RLPE---SLIHLSSETTV 289 (622)
T ss_dssp TTCCEEECCSSC-CSCCC---CCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSC-CC-SCCG---GGGGSCTTCEE
T ss_pred CCCCEEEccCCc-cCcCC---CCCCcCcEEECCCCCCCcCCc--ccccCcEEeCCCCC-CC-cCCH---HHhhccccCEE
Confidence 567777777763 45555 3456777777777 6666655 56677777777775 33 2233 46677777777
Q ss_pred Eeecc
Q 011033 372 TIEGC 376 (495)
Q Consensus 372 ~l~~~ 376 (495)
++++|
T Consensus 290 ~L~~N 294 (622)
T 3g06_A 290 NLEGN 294 (622)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 77776
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.82 E-value=3.3e-19 Score=172.52 Aligned_cols=266 Identities=14% Similarity=0.095 Sum_probs=169.0
Q ss_pred cccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccc-cccCCCCccEEEEeCCCCCCCCCC
Q 011033 16 QDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQ-SSLSLSSLREIEIYKCSSLVSFPE 94 (495)
Q Consensus 16 ~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~-~~~~l~~L~~L~l~~~~~l~~l~~ 94 (495)
..|+.....+.++ +.++.+|.+ + +++|++|++++| .+..++. .+..+++|++|++++| .++.+++
T Consensus 28 ~~C~~~~~c~~~~-~~l~~iP~~-----~------~~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~ 93 (353)
T 2z80_A 28 LSCDRNGICKGSS-GSLNSIPSG-----L------TEAVKSLDLSNN-RITYISNSDLQRCVNLQALVLTSN-GINTIEE 93 (353)
T ss_dssp CEECTTSEEECCS-TTCSSCCTT-----C------CTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTS-CCCEECT
T ss_pred CCCCCCeEeeCCC-CCccccccc-----c------cccCcEEECCCC-cCcccCHHHhccCCCCCEEECCCC-ccCccCH
Confidence 3567777788887 678888764 2 267999999997 4566654 6888999999999887 6666643
Q ss_pred --CCCCCCCcEEEEeCCCCCCccccc-cccCCCCCccEEecccCcccccccc---ccCCCCccEEEeccCCCcccccccc
Q 011033 95 --VALPSKLKIIEIEGCDALKSLPEA-WMCDTNSSLETLYIEHCRTLTYLAG---VQLPRSLKRLDILSCDNIRTLTVEE 168 (495)
Q Consensus 95 --~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~---~~~~~~L~~L~l~~~~~l~~~~~~~ 168 (495)
++.+++|++|++++|. +..++.. +... ++|++|++++| .++.++. ...+++|+.|+++++..+..+ +.
T Consensus 94 ~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l--~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~--~~ 167 (353)
T 2z80_A 94 DSFSSLGSLEHLDLSYNY-LSNLSSSWFKPL--SSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKI--QR 167 (353)
T ss_dssp TTTTTCTTCCEEECCSSC-CSSCCHHHHTTC--TTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEE--CT
T ss_pred hhcCCCCCCCEEECCCCc-CCcCCHhHhCCC--ccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCcccccc--CH
Confidence 7888999999999887 5566665 4444 78899999885 4556655 255677777777775444333 11
Q ss_pred ccccCCCCccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCc
Q 011033 169 GIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLE 248 (495)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 248 (495)
.. +. . .++|++|++++|......|..+..+++|+
T Consensus 168 ~~---------------------------~~------------------~-l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 201 (353)
T 2z80_A 168 KD---------------------------FA------------------G-LTFLEELEIDASDLQSYEPKSLKSIQNVS 201 (353)
T ss_dssp TT---------------------------TT------------------T-CCEEEEEEEEETTCCEECTTTTTTCSEEE
T ss_pred HH---------------------------cc------------------C-CCCCCEEECCCCCcCccCHHHHhccccCC
Confidence 00 00 0 15677777777766666666777778888
Q ss_pred EEeeeCCCCCCccccc-CCCCCCccEEEeeCCCCccccCC----CCCCCCCCcEEEecCcccc----ccccccccCCCCc
Q 011033 249 TINISGCENLKILPSG-LHNLGQLQEIEIWECENLVSFPE----GGLPCAKLSKLRIYGCERL----EALPKGLHNLTSL 319 (495)
Q Consensus 249 ~L~l~~~~~~~~l~~~-~~~l~~L~~L~l~~~~~l~~l~~----~~~~~~~L~~L~l~~~~~~----~~~~~~l~~l~~L 319 (495)
+|++++|. +..++.. +..+++|+.|++++| .++.++. .....+.++.++++++... ..+|..+..+++|
T Consensus 202 ~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L 279 (353)
T 2z80_A 202 HLILHMKQ-HILLLEIFVDVTSSVECLELRDT-DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGL 279 (353)
T ss_dssp EEEEECSC-STTHHHHHHHHTTTEEEEEEESC-BCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTC
T ss_pred eecCCCCc-cccchhhhhhhcccccEEECCCC-ccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCC
Confidence 88887754 4444433 334678888888877 3443321 1122345666666665322 2355566666777
Q ss_pred ceeEecc-ccccccCC--CCCCccceeEeeccC
Q 011033 320 QQLTIGG-ELPSLEED--GLPTNLHSLHIWGNM 349 (495)
Q Consensus 320 ~~L~l~~-~l~~~~~~--~~~~~L~~L~l~~~~ 349 (495)
++|++++ .+..++.. ..+++|++|++++|.
T Consensus 280 ~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 280 LELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEECCCCCCCccCHHHHhcCCCCCEEEeeCCC
Confidence 7777766 55555442 234455555555554
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.81 E-value=9.3e-19 Score=175.20 Aligned_cols=241 Identities=17% Similarity=0.137 Sum_probs=167.1
Q ss_pred cccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCC--CCC
Q 011033 20 SLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE--VAL 97 (495)
Q Consensus 20 ~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~--~~~ 97 (495)
..+.++.++ ..++.+|.+ + +++|++|++++|......+..+..+++|++|++++| .++.++. +..
T Consensus 55 ~~~~v~c~~-~~l~~iP~~-----~------~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~ 121 (452)
T 3zyi_A 55 QFSKVVCTR-RGLSEVPQG-----I------PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNG 121 (452)
T ss_dssp SSCEEECCS-SCCSSCCSC-----C------CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTT
T ss_pred CCcEEEECC-CCcCccCCC-----C------CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccC
Confidence 356777777 678888764 2 278999999998544444667899999999999998 6766653 788
Q ss_pred CCCCcEEEEeCCCCCCccccc-cccCCCCCccEEecccCccccccccc--cCCCCccEEEeccCCCccccccccccccCC
Q 011033 98 PSKLKIIEIEGCDALKSLPEA-WMCDTNSSLETLYIEHCRTLTYLAGV--QLPRSLKRLDILSCDNIRTLTVEEGIQSSS 174 (495)
Q Consensus 98 ~~~L~~L~l~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 174 (495)
+++|++|++++|. +..++.. +... ++|++|++++| .++.++.. ..+++|+.|+++++..++.+ +...
T Consensus 122 l~~L~~L~L~~n~-l~~~~~~~~~~l--~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i--~~~~---- 191 (452)
T 3zyi_A 122 LASLNTLELFDNW-LTVIPSGAFEYL--SKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYI--SEGA---- 191 (452)
T ss_dssp CTTCCEEECCSSC-CSBCCTTTSSSC--TTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEE--CTTT----
T ss_pred cccCCEEECCCCc-CCccChhhhccc--CCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCcccc--Chhh----
Confidence 9999999999987 5566654 4334 88999999985 46666653 66889999999988777766 3321
Q ss_pred CCccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeC
Q 011033 175 SSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISG 254 (495)
Q Consensus 175 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 254 (495)
....++|+.|+++++ .++.+ +.....++|+.|++++|...+..+..+..+++|+.|++++
T Consensus 192 ------~~~l~~L~~L~L~~n-~l~~~-------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 251 (452)
T 3zyi_A 192 ------FEGLFNLKYLNLGMC-NIKDM-------------PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMN 251 (452)
T ss_dssp ------TTTCTTCCEEECTTS-CCSSC-------------CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTT
T ss_pred ------ccCCCCCCEEECCCC-ccccc-------------ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCC
Confidence 112456777777773 44433 2122236677777777776666666777777777777777
Q ss_pred CCCCCcccccCCCCCCccEEEeeCCCCccccCC-CCCCCCCCcEEEecCcc
Q 011033 255 CENLKILPSGLHNLGQLQEIEIWECENLVSFPE-GGLPCAKLSKLRIYGCE 304 (495)
Q Consensus 255 ~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~ 304 (495)
|......+..+..+++|+.|++++| .++.++. .+..+++|+.|++++|+
T Consensus 252 n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 252 SQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CcCceECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence 5433333556677777777777777 4555554 44556777777777764
No 56
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.81 E-value=3.1e-21 Score=200.40 Aligned_cols=370 Identities=15% Similarity=0.135 Sum_probs=209.2
Q ss_pred ccccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCcc--ccccccCCCCccEEEEeCCCCCCCC
Q 011033 15 LQDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVK--LPQSSLSLSSLREIEIYKCSSLVSF 92 (495)
Q Consensus 15 ~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~--l~~~~~~l~~L~~L~l~~~~~l~~l 92 (495)
...+++|++|++++|. ++.. .+..++..+++|++|++++|..++. ++..+..+++|++|++++|. ++..
T Consensus 101 ~~~~~~L~~L~L~~~~-~~~~-------~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~ 171 (594)
T 2p1m_B 101 SSSYTWLEEIRLKRMV-VTDD-------CLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDV 171 (594)
T ss_dssp HHHCTTCCEEEEESCB-CCHH-------HHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECC
T ss_pred HHhCCCCCeEEeeCcE-EcHH-------HHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCc
Confidence 3578899999999964 4432 2444444459999999999966554 55556689999999999984 4432
Q ss_pred -----CC-CCCCCCCcEEEEeCCC-CCC--ccccccccCCCCCccEEecccCccccccccc-cCCCCccEEEeccCCC-c
Q 011033 93 -----PE-VALPSKLKIIEIEGCD-ALK--SLPEAWMCDTNSSLETLYIEHCRTLTYLAGV-QLPRSLKRLDILSCDN-I 161 (495)
Q Consensus 93 -----~~-~~~~~~L~~L~l~~~~-~~~--~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~-l 161 (495)
+. ...+++|++|++++|. .+. .++..... +++|++|++.+|..++.++.. ..+++|+.|.+..+.. +
T Consensus 172 ~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~--~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~ 249 (594)
T 2p1m_B 172 SGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTR--CPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEV 249 (594)
T ss_dssp CGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHH--CTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCC
T ss_pred chHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHh--CCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCcc
Confidence 22 3468899999999986 111 11122222 388999999998666665544 5678899998876532 1
Q ss_pred ccccc---ccccccCCCCccCcccCcccccee-eecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchh-
Q 011033 162 RTLTV---EEGIQSSSSSSSNRRYTSSLLEKL-EIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLES- 236 (495)
Q Consensus 162 ~~~~~---~~~~~~~~~~~~~~~~~~~~L~~L-~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~- 236 (495)
..-.+ +..+ ..+++|+.+ .+.+ .. ...++. .....++|++|++++|.....
T Consensus 250 ~~~~~~~l~~~l-----------~~~~~L~~Ls~~~~---~~--------~~~l~~--~~~~~~~L~~L~L~~~~l~~~~ 305 (594)
T 2p1m_B 250 RPDVYSGLSVAL-----------SGCKELRCLSGFWD---AV--------PAYLPA--VYSVCSRLTTLNLSYATVQSYD 305 (594)
T ss_dssp CHHHHHHHHHHH-----------HTCTTCCEEECCBT---CC--------GGGGGG--GHHHHTTCCEEECTTCCCCHHH
T ss_pred chhhHHHHHHHH-----------hcCCCcccccCCcc---cc--------hhhHHH--HHHhhCCCCEEEccCCCCCHHH
Confidence 10000 1000 112233333 1111 00 000000 000126788888887773332
Q ss_pred hhhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCC--------CCcccc--CCCCCCCCCCcEEEecCcccc
Q 011033 237 IAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWEC--------ENLVSF--PEGGLPCAKLSKLRIYGCERL 306 (495)
Q Consensus 237 ~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~--------~~l~~l--~~~~~~~~~L~~L~l~~~~~~ 306 (495)
+...+..+++|++|++.+|.....++.....+++|++|+++.+ ..++.. ......+++|+.|.+..+. +
T Consensus 306 l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~-l 384 (594)
T 2p1m_B 306 LVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQ-M 384 (594)
T ss_dssp HHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESC-C
T ss_pred HHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCC-c
Confidence 2334567788888888776111112222334677888888442 222211 1112236678888665443 3
Q ss_pred cc-ccccc-cCCCCcceeEec-------cccccccC-------CCCCCccceeEeeccCccchhhhcccccCCCCCccce
Q 011033 307 EA-LPKGL-HNLTSLQQLTIG-------GELPSLEE-------DGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRH 370 (495)
Q Consensus 307 ~~-~~~~l-~~l~~L~~L~l~-------~~l~~~~~-------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~ 370 (495)
+. ....+ ..+++|+.|+++ ..+...+. ...+++|++|++++ .+.+.... .....+++|+.
T Consensus 385 ~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~--~l~~~~~~L~~ 460 (594)
T 2p1m_B 385 TNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFE--YIGTYAKKMEM 460 (594)
T ss_dssp CHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHH--HHHHHCTTCCE
T ss_pred CHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHH--HHHHhchhccE
Confidence 32 12222 246788888887 13332211 12356788888866 34443333 12223778888
Q ss_pred EEeecccccccc--chhhhccccccCCCCCCCceeeeccccccccc--ccccccCCCCCeEeccCCCC
Q 011033 371 LTIEGCDDDMVS--FPLEDKRLGTALPLPASLTSLRIVDFPNLERL--SSSIVDLQNLTHLNLVDCPK 434 (495)
Q Consensus 371 L~l~~~~~~~~~--~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l--~~~~~~~~~L~~L~l~~c~~ 434 (495)
|++++| .+.. +..-. ..+++|+.|++++|+. +.. ......+++|++|++++|+.
T Consensus 461 L~L~~~--~i~~~~~~~l~-------~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 461 LSVAFA--GDSDLGMHHVL-------SGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp EEEESC--CSSHHHHHHHH-------HHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred eeccCC--CCcHHHHHHHH-------hcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 888887 3322 11110 1246888888888765 332 22445678888888888863
No 57
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.81 E-value=4.8e-18 Score=174.77 Aligned_cols=255 Identities=26% Similarity=0.265 Sum_probs=200.6
Q ss_pred ccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCCCCCC
Q 011033 19 CSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALP 98 (495)
Q Consensus 19 ~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~ 98 (495)
.+++.|++++ +.++.+|.. + +++|++|++++| .+..+|. .+++|++|++++| .++.+|. .+
T Consensus 40 ~~l~~L~ls~-n~L~~lp~~-----l------~~~L~~L~L~~N-~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~--~l 100 (622)
T 3g06_A 40 NGNAVLNVGE-SGLTTLPDC-----L------PAHITTLVIPDN-NLTSLPA---LPPELRTLEVSGN-QLTSLPV--LP 100 (622)
T ss_dssp HCCCEEECCS-SCCSCCCSC-----C------CTTCSEEEECSC-CCSCCCC---CCTTCCEEEECSC-CCSCCCC--CC
T ss_pred CCCcEEEecC-CCcCccChh-----h------CCCCcEEEecCC-CCCCCCC---cCCCCCEEEcCCC-cCCcCCC--CC
Confidence 3699999999 678888774 2 278999999998 5678886 6789999999998 6888886 88
Q ss_pred CCCcEEEEeCCCCCCccccccccCCCCCccEEecccCccccccccccCCCCccEEEeccCCCccccccccccccCCCCcc
Q 011033 99 SKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQSSSSSSS 178 (495)
Q Consensus 99 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~ 178 (495)
++|++|++++|. +..+|.. . ++|+.|++++| .++.+|. .+++|+.|+++++ .++.+ +..
T Consensus 101 ~~L~~L~Ls~N~-l~~l~~~---l--~~L~~L~L~~N-~l~~lp~--~l~~L~~L~Ls~N-~l~~l--~~~--------- 159 (622)
T 3g06_A 101 PGLLELSIFSNP-LTHLPAL---P--SGLCKLWIFGN-QLTSLPV--LPPGLQELSVSDN-QLASL--PAL--------- 159 (622)
T ss_dssp TTCCEEEECSCC-CCCCCCC---C--TTCCEEECCSS-CCSCCCC--CCTTCCEEECCSS-CCSCC--CCC---------
T ss_pred CCCCEEECcCCc-CCCCCCC---C--CCcCEEECCCC-CCCcCCC--CCCCCCEEECcCC-cCCCc--CCc---------
Confidence 999999999987 6667762 3 78999999985 5777776 3589999999996 56554 432
Q ss_pred CcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCC
Q 011033 179 NRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENL 258 (495)
Q Consensus 179 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 258 (495)
..+++.|++++ +.++.+ + ..+++|+.|++++|... .+|. .+++|+.|++++| .+
T Consensus 160 -----~~~L~~L~L~~-N~l~~l-------------~--~~~~~L~~L~Ls~N~l~-~l~~---~~~~L~~L~L~~N-~l 213 (622)
T 3g06_A 160 -----PSELCKLWAYN-NQLTSL-------------P--MLPSGLQELSVSDNQLA-SLPT---LPSELYKLWAYNN-RL 213 (622)
T ss_dssp -----CTTCCEEECCS-SCCSCC-------------C--CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSS-CC
T ss_pred -----cCCCCEEECCC-CCCCCC-------------c--ccCCCCcEEECCCCCCC-CCCC---ccchhhEEECcCC-cc
Confidence 23688999888 455554 3 34488999999987654 3443 3579999999985 56
Q ss_pred CcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCccccccccccccCCCCcceeEecc-ccccccCC-CC
Q 011033 259 KILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSLEED-GL 336 (495)
Q Consensus 259 ~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~-~~ 336 (495)
..+|.. +++|+.|++++| .++.+| ..+++|+.|++++|. ++.+|. .+++|+.|++++ .+..+|.. ..
T Consensus 214 ~~l~~~---~~~L~~L~Ls~N-~L~~lp---~~l~~L~~L~Ls~N~-L~~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~ 282 (622)
T 3g06_A 214 TSLPAL---PSGLKELIVSGN-RLTSLP---VLPSELKELMVSGNR-LTSLPM---LPSGLLSLSVYRNQLTRLPESLIH 282 (622)
T ss_dssp SSCCCC---CTTCCEEECCSS-CCSCCC---CCCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCCCSCCGGGGG
T ss_pred cccCCC---CCCCCEEEccCC-ccCcCC---CCCCcCcEEECCCCC-CCcCCc---ccccCcEEeCCCCCCCcCCHHHhh
Confidence 666643 488999999998 677776 345799999999985 667876 678999999999 88888764 56
Q ss_pred CCccceeEeeccCc
Q 011033 337 PTNLHSLHIWGNME 350 (495)
Q Consensus 337 ~~~L~~L~l~~~~~ 350 (495)
+++|+.|++++|..
T Consensus 283 l~~L~~L~L~~N~l 296 (622)
T 3g06_A 283 LSSETTVNLEGNPL 296 (622)
T ss_dssp SCTTCEEECCSCCC
T ss_pred ccccCEEEecCCCC
Confidence 78999999999984
No 58
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.81 E-value=6.6e-19 Score=170.42 Aligned_cols=105 Identities=19% Similarity=0.175 Sum_probs=50.6
Q ss_pred CCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccc--cCCCCCCccEEEeeCCCCccccC-CCCCCCCCCcE
Q 011033 221 PSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPS--GLHNLGQLQEIEIWECENLVSFP-EGGLPCAKLSK 297 (495)
Q Consensus 221 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~--~~~~l~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~ 297 (495)
++|++|++++|...+..+..+..+++|++|++++| .+..++. .+..+++|++|++++|..++.++ ..+..+++|+.
T Consensus 100 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 178 (353)
T 2z80_A 100 GSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEE 178 (353)
T ss_dssp TTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEE
T ss_pred CCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCE
Confidence 34444444444333322333455555555555553 2333433 34555566666665554344443 24444555555
Q ss_pred EEecCccccccccccccCCCCcceeEecc
Q 011033 298 LRIYGCERLEALPKGLHNLTSLQQLTIGG 326 (495)
Q Consensus 298 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 326 (495)
|++++|......|..+..+++|++|++++
T Consensus 179 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 207 (353)
T 2z80_A 179 LEIDASDLQSYEPKSLKSIQNVSHLILHM 207 (353)
T ss_dssp EEEEETTCCEECTTTTTTCSEEEEEEEEC
T ss_pred EECCCCCcCccCHHHHhccccCCeecCCC
Confidence 55555543333344455555555555544
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.80 E-value=1.3e-18 Score=173.57 Aligned_cols=240 Identities=17% Similarity=0.163 Sum_probs=156.9
Q ss_pred cccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccc-cccccCCCCccEEEEeCCCCCCCCCC--CC
Q 011033 20 SLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKL-PQSSLSLSSLREIEIYKCSSLVSFPE--VA 96 (495)
Q Consensus 20 ~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l-~~~~~~l~~L~~L~l~~~~~l~~l~~--~~ 96 (495)
..+.++.++ ..++.+|.+ +. ++++.|++++|. +..+ +..+..+++|++|++++| .++.++. +.
T Consensus 44 ~~~~v~c~~-~~l~~iP~~-----~~------~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~ 109 (440)
T 3zyj_A 44 QFSKVICVR-KNLREVPDG-----IS------TNTRLLNLHENQ-IQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFN 109 (440)
T ss_dssp TSCEEECCS-CCCSSCCSC-----CC------TTCSEEECCSCC-CCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGT
T ss_pred CCCEEEeCC-CCcCcCCCC-----CC------CCCcEEEccCCc-CCeeCHHHhhCCCCCCEEECCCC-cCCccChhhcc
Confidence 356777777 678888775 32 778999999984 4544 466889999999999997 6766663 78
Q ss_pred CCCCCcEEEEeCCCCCCccccc-cccCCCCCccEEecccCccccccccc--cCCCCccEEEeccCCCccccccccccccC
Q 011033 97 LPSKLKIIEIEGCDALKSLPEA-WMCDTNSSLETLYIEHCRTLTYLAGV--QLPRSLKRLDILSCDNIRTLTVEEGIQSS 173 (495)
Q Consensus 97 ~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 173 (495)
.+++|++|++++|. +..++.. +... ++|++|++++| .++.++.. ..+++|+.|+++++..+..+ +...
T Consensus 110 ~l~~L~~L~L~~n~-l~~~~~~~~~~l--~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i--~~~~--- 180 (440)
T 3zyj_A 110 GLANLNTLELFDNR-LTTIPNGAFVYL--SKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYI--SEGA--- 180 (440)
T ss_dssp TCSSCCEEECCSSC-CSSCCTTTSCSC--SSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEE--CTTT---
T ss_pred CCccCCEEECCCCc-CCeeCHhHhhcc--ccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCccee--Ccch---
Confidence 88999999999987 5566653 4444 88999999885 46666653 56789999999887777655 3321
Q ss_pred CCCccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeee
Q 011033 174 SSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINIS 253 (495)
Q Consensus 174 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 253 (495)
....++|+.|+++++ .++.+ +...-.++|+.|++++|......+..+..+++|+.|+++
T Consensus 181 -------~~~l~~L~~L~L~~n-~l~~~-------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 239 (440)
T 3zyj_A 181 -------FEGLSNLRYLNLAMC-NLREI-------------PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMI 239 (440)
T ss_dssp -------TTTCSSCCEEECTTS-CCSSC-------------CCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred -------hhcccccCeecCCCC-cCccc-------------cccCCCcccCEEECCCCccCccChhhhccCccCCEEECC
Confidence 112445777777663 34433 111222566677776665555555566666677777776
Q ss_pred CCCCCCcccccCCCCCCccEEEeeCCCCccccCC-CCCCCCCCcEEEecCcc
Q 011033 254 GCENLKILPSGLHNLGQLQEIEIWECENLVSFPE-GGLPCAKLSKLRIYGCE 304 (495)
Q Consensus 254 ~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~ 304 (495)
+|......+..+.++++|+.|++++| .++.++. .+..+++|+.|++++|+
T Consensus 240 ~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 240 QSQIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TCCCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred CCceeEEChhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence 64333223445666666777777666 4444443 34455666666666654
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.80 E-value=3.3e-18 Score=170.59 Aligned_cols=198 Identities=18% Similarity=0.212 Sum_probs=145.3
Q ss_pred CCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCccc-ccCCCCCCccEEEeeCCCCccccCC-CCCCCCCCcEE
Q 011033 221 PSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILP-SGLHNLGQLQEIEIWECENLVSFPE-GGLPCAKLSKL 298 (495)
Q Consensus 221 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L 298 (495)
++|+.|++++|......+..+..+++|++|++++| .+..++ ..+..+++|++|++++| .++.++. .+..+++|+.|
T Consensus 88 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L 165 (440)
T 3zyj_A 88 RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRL 165 (440)
T ss_dssp SSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCEEECCSC-CCCEECTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cCCeeCHhHhhccccCceeeCCCC-cccccCHHHhhhCcccCEe
Confidence 66777777777666555667788888888888885 455554 35778888888888887 4555554 66677888888
Q ss_pred EecCccccccccc-cccCCCCcceeEecc-ccccccCCCCCCccceeEeeccCccchhhhcccccCCCCCccceEEeecc
Q 011033 299 RIYGCERLEALPK-GLHNLTSLQQLTIGG-ELPSLEEDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGC 376 (495)
Q Consensus 299 ~l~~~~~~~~~~~-~l~~l~~L~~L~l~~-~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 376 (495)
++++|..+..++. .+..+++|++|++++ .+..++....+++|++|++++|. +....+. .+.++++|+.|++++|
T Consensus 166 ~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~---~~~~l~~L~~L~L~~n 241 (440)
T 3zyj_A 166 DLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNH-LSAIRPG---SFQGLMHLQKLWMIQS 241 (440)
T ss_dssp ECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSC-CCEECTT---TTTTCTTCCEEECTTC
T ss_pred CCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCc-cCccChh---hhccCccCCEEECCCC
Confidence 8888777777665 577888888888888 77777776777888888888886 3333333 6778888888888887
Q ss_pred ccccccchhhhccccccCCCCCCCceeeeccccccccccc-ccccCCCCCeEeccCCC
Q 011033 377 DDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSS-SIVDLQNLTHLNLVDCP 433 (495)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~ 433 (495)
.+..++... +..+++|+.|++++ +.++.++. .+..+++|+.|++++|+
T Consensus 242 --~l~~~~~~~------~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 242 --QIQVIERNA------FDNLQSLVEINLAH-NNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp --CCCEECTTS------STTCTTCCEEECTT-SCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred --ceeEEChhh------hcCCCCCCEEECCC-CCCCccChhHhccccCCCEEEcCCCC
Confidence 666654422 33567888888888 57777765 56778888888888765
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.80 E-value=7.4e-20 Score=174.23 Aligned_cols=239 Identities=14% Similarity=0.095 Sum_probs=142.7
Q ss_pred cccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCCCCCCCCCcEEEEeCCCCCCccccccccCCCCCccE
Q 011033 50 LSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLET 129 (495)
Q Consensus 50 ~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 129 (495)
.+++|++|++++|......|..+..+++|++|++++| .+...+++..+++|++|++++|. +..++.. ++|++
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~------~~L~~ 103 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLDLESLSTLRTLDLNNNY-VQELLVG------PSIET 103 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTS-CCEEEEEETTCTTCCEEECCSSE-EEEEEEC------TTCCE
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCC-cCCcchhhhhcCCCCEEECcCCc-cccccCC------CCcCE
Confidence 3478888888887433333356778888888888887 55544457778888888888876 4544432 67888
Q ss_pred EecccCccccccccccCCCCccEEEeccCCCccccccccccccCCCCccCcccCccccceeeecCCCCCcccccCCCCcc
Q 011033 130 LYIEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPA 209 (495)
Q Consensus 130 L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 209 (495)
|++++| .++.++.. .+++|+.|+++++ .++.+ +... ....++|+.|+++++ .++.+. +.
T Consensus 104 L~l~~n-~l~~~~~~-~~~~L~~L~l~~N-~l~~~--~~~~----------~~~l~~L~~L~Ls~N-~l~~~~-----~~ 162 (317)
T 3o53_A 104 LHAANN-NISRVSCS-RGQGKKNIYLANN-KITML--RDLD----------EGCRSRVQYLDLKLN-EIDTVN-----FA 162 (317)
T ss_dssp EECCSS-CCSEEEEC-CCSSCEEEECCSS-CCCSG--GGBC----------TGGGSSEEEEECTTS-CCCEEE-----GG
T ss_pred EECCCC-ccCCcCcc-ccCCCCEEECCCC-CCCCc--cchh----------hhccCCCCEEECCCC-CCCccc-----HH
Confidence 888874 45554443 3567888887774 44433 2111 011345666666652 333320 00
Q ss_pred cccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCC
Q 011033 210 TLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGG 289 (495)
Q Consensus 210 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~ 289 (495)
....-.++|++|++++|..... +. ...+++|++|++++| .+..++..+..+++|+.|++++| .++.+|..+
T Consensus 163 -----~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~ 233 (317)
T 3o53_A 163 -----ELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN-KLVLIEKAL 233 (317)
T ss_dssp -----GGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTS-CCCEECTTC
T ss_pred -----HHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCC-cCCcchhhhcccCcccEEECcCC-cccchhhHh
Confidence 0001125677777776654333 22 234667777777764 44455555666777777777776 555666666
Q ss_pred CCCCCCcEEEecCcccc-ccccccccCCCCcceeEecc
Q 011033 290 LPCAKLSKLRIYGCERL-EALPKGLHNLTSLQQLTIGG 326 (495)
Q Consensus 290 ~~~~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~ 326 (495)
..+++|+.|++++|+.. ..+|.++..+++|+.+++.+
T Consensus 234 ~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271 (317)
T ss_dssp CCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred hcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCC
Confidence 66667777777776654 34555666666666666654
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.80 E-value=4.8e-18 Score=170.05 Aligned_cols=198 Identities=21% Similarity=0.245 Sum_probs=141.8
Q ss_pred CCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCccc-ccCCCCCCccEEEeeCCCCccccCC-CCCCCCCCcEE
Q 011033 221 PSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILP-SGLHNLGQLQEIEIWECENLVSFPE-GGLPCAKLSKL 298 (495)
Q Consensus 221 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L 298 (495)
++|+.|++++|......+..+..+++|+.|++++|. +..++ ..+..+++|++|++++| .++.++. .+..+++|+.|
T Consensus 99 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L 176 (452)
T 3zyi_A 99 HHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRL 176 (452)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTSSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-CCccChhhhcccCCCCEEECCCC-CcceeCHhHHhcCCcccEE
Confidence 667777777776665556677788888888888754 44554 44777888888888887 4555554 56677888888
Q ss_pred EecCccccccccc-cccCCCCcceeEecc-ccccccCCCCCCccceeEeeccCccchhhhcccccCCCCCccceEEeecc
Q 011033 299 RIYGCERLEALPK-GLHNLTSLQQLTIGG-ELPSLEEDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGC 376 (495)
Q Consensus 299 ~l~~~~~~~~~~~-~l~~l~~L~~L~l~~-~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 376 (495)
++++|..++.++. .+..+++|++|++++ .+..++....+++|++|++++|.. ....+. .+.++++|+.|++++|
T Consensus 177 ~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~---~~~~l~~L~~L~L~~n 252 (452)
T 3zyi_A 177 DLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHF-PEIRPG---SFHGLSSLKKLWVMNS 252 (452)
T ss_dssp ECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCC-SEECGG---GGTTCTTCCEEECTTS
T ss_pred eCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcC-cccCcc---cccCccCCCEEEeCCC
Confidence 8888777777765 577788888888888 777777667778888888888873 323333 5777888888888887
Q ss_pred ccccccchhhhccccccCCCCCCCceeeeccccccccccc-ccccCCCCCeEeccCCC
Q 011033 377 DDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSS-SIVDLQNLTHLNLVDCP 433 (495)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~ 433 (495)
.+..++... +..+++|+.|++++ +.++.++. .+..+++|++|++++|+
T Consensus 253 --~l~~~~~~~------~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 253 --QVSLIERNA------FDGLASLVELNLAH-NNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp --CCCEECTTT------TTTCTTCCEEECCS-SCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred --cCceECHHH------hcCCCCCCEEECCC-CcCCccChHHhccccCCCEEEccCCC
Confidence 555554422 23456888888888 56777765 56778888888888765
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.80 E-value=5.3e-20 Score=175.22 Aligned_cols=258 Identities=13% Similarity=0.110 Sum_probs=166.6
Q ss_pred cccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCC--CCCCCCCcEEEEeCCCCCCccccccccCCCCCccE
Q 011033 52 CRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE--VALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLET 129 (495)
Q Consensus 52 ~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 129 (495)
..++.++++.+.....+...+..+++|++|++++| .++.+++ +..+++|++|++++|. +...++ +... ++|++
T Consensus 10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~l--~~L~~ 84 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESL--STLRT 84 (317)
T ss_dssp TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTSC-CEEEEE-ETTC--TTCCE
T ss_pred CceeEeeccccchhhhHHHHhccCCCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCCc-CCcchh-hhhc--CCCCE
Confidence 34666677765332233334556789999999998 6776663 8889999999999987 444443 4334 88999
Q ss_pred EecccCccccccccccCCCCccEEEeccCCCccccccccccccCCCCccCcccCccccceeeecCCCCCcccccCCCCcc
Q 011033 130 LYIEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPA 209 (495)
Q Consensus 130 L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 209 (495)
|++++| .++.++. .++|+.|+++++ .++.+ +
T Consensus 85 L~Ls~n-~l~~l~~---~~~L~~L~l~~n-~l~~~--~------------------------------------------ 115 (317)
T 3o53_A 85 LDLNNN-YVQELLV---GPSIETLHAANN-NISRV--S------------------------------------------ 115 (317)
T ss_dssp EECCSS-EEEEEEE---CTTCCEEECCSS-CCSEE--E------------------------------------------
T ss_pred EECcCC-ccccccC---CCCcCEEECCCC-ccCCc--C------------------------------------------
Confidence 999885 3555443 367777777764 33322 1
Q ss_pred cccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccccC-CCCCCccEEEeeCCCCccccCCC
Q 011033 210 TLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGL-HNLGQLQEIEIWECENLVSFPEG 288 (495)
Q Consensus 210 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~-~~l~~L~~L~l~~~~~l~~l~~~ 288 (495)
... .++|+.|++++|......+..+..+++|+.|++++|......+..+ ..+++|++|++++| .++.++..
T Consensus 116 ------~~~-~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~ 187 (317)
T 3o53_A 116 ------CSR-GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQ 187 (317)
T ss_dssp ------ECC-CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEECC
T ss_pred ------ccc-cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC-cCcccccc
Confidence 111 1567777777666665555567777888888888754333233444 35788888888887 45555543
Q ss_pred CCCCCCCcEEEecCccccccccccccCCCCcceeEecc-ccccccCC-CCCCccceeEeeccCccchhhhcccccCCCCC
Q 011033 289 GLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSLEED-GLPTNLHSLHIWGNMEIWKSMIERGRGFHRFS 366 (495)
Q Consensus 289 ~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~ 366 (495)
. .+++|+.|++++|. ++.+|..+..+++|++|++++ .+..++.. ..+++|++|++++|.......+. .+..++
T Consensus 188 ~-~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~---~~~~~~ 262 (317)
T 3o53_A 188 V-VFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRD---FFSKNQ 262 (317)
T ss_dssp C-CCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHH---HHHTCH
T ss_pred c-ccccCCEEECCCCc-CCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHH---HHhccc
Confidence 3 36688888888875 556666677778888888877 66666543 44567777777777644334443 455666
Q ss_pred ccceEEeecc
Q 011033 367 SLRHLTIEGC 376 (495)
Q Consensus 367 ~L~~L~l~~~ 376 (495)
+|+.|+++++
T Consensus 263 ~L~~l~l~~~ 272 (317)
T 3o53_A 263 RVQTVAKQTV 272 (317)
T ss_dssp HHHHHHHHHH
T ss_pred cceEEECCCc
Confidence 6666666654
No 64
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.79 E-value=1.4e-18 Score=164.57 Aligned_cols=224 Identities=17% Similarity=0.156 Sum_probs=169.8
Q ss_pred CCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcc---cccCCCCCCccEEEeeCCCCccccCCCCCCCCC
Q 011033 218 NLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKIL---PSGLHNLGQLQEIEIWECENLVSFPEGGLPCAK 294 (495)
Q Consensus 218 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l---~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~ 294 (495)
.+++++++|++++|......+..+..+++|++|++++|. +..+ +..+..+++|++|++++| .+..++..+..+++
T Consensus 25 ~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~l~~~~~~l~~ 102 (306)
T 2z66_A 25 GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQ 102 (306)
T ss_dssp CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEECCSC-SEEEEEEEEETCTT
T ss_pred CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCc-cCcccCcccccccccccCEEECCCC-ccccChhhcCCCCC
Confidence 345789999999887654434457899999999999864 4333 455667899999999998 67777777778899
Q ss_pred CcEEEecCcccccccc--ccccCCCCcceeEecc-ccccccCC--CCCCccceeEeeccCccchhhhcccccCCCCCccc
Q 011033 295 LSKLRIYGCERLEALP--KGLHNLTSLQQLTIGG-ELPSLEED--GLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLR 369 (495)
Q Consensus 295 L~~L~l~~~~~~~~~~--~~l~~l~~L~~L~l~~-~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~ 369 (495)
|+.|++++|. ++.++ ..+..+++|++|++++ .+...... ..+++|++|++++|.......+. .+..+++|+
T Consensus 103 L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~~l~~L~ 178 (306)
T 2z66_A 103 LEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD---IFTELRNLT 178 (306)
T ss_dssp CCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECS---CCTTCTTCC
T ss_pred CCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchh---HHhhCcCCC
Confidence 9999999986 45454 3788899999999998 66554433 45789999999999743323333 688999999
Q ss_pred eEEeeccccccccchhhhccccccCCCCCCCceeeeccccccccccc-ccccCCCCCeEeccCCCCCCCCCCCC---Ccc
Q 011033 370 HLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSS-SIVDLQNLTHLNLVDCPKLKYFPEKG---LPS 445 (495)
Q Consensus 370 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~~---~~~ 445 (495)
+|++++| .+..++... +..+++|+.|++++ +.++.++. .+..+++|++|++++|+ +...+... .++
T Consensus 179 ~L~Ls~n--~l~~~~~~~------~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~ 248 (306)
T 2z66_A 179 FLDLSQC--QLEQLSPTA------FNSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSLNH-IMTSKKQELQHFPS 248 (306)
T ss_dssp EEECTTS--CCCEECTTT------TTTCTTCCEEECTT-SCCSBCCSGGGTTCTTCCEEECTTSC-CCBCSSSSCCCCCT
T ss_pred EEECCCC--CcCCcCHHH------hcCCCCCCEEECCC-CccCccChhhccCcccCCEeECCCCC-CcccCHHHHHhhhc
Confidence 9999998 666664322 23567999999999 56777765 67889999999999964 66654432 235
Q ss_pred ccceeeccCCch
Q 011033 446 SLLQLSIYRCPL 457 (495)
Q Consensus 446 ~L~~L~l~~c~~ 457 (495)
+|++|++++|+.
T Consensus 249 ~L~~L~L~~N~~ 260 (306)
T 2z66_A 249 SLAFLNLTQNDF 260 (306)
T ss_dssp TCCEEECTTCCE
T ss_pred cCCEEEccCCCe
Confidence 999999999964
No 65
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.78 E-value=3.9e-19 Score=179.05 Aligned_cols=107 Identities=14% Similarity=0.106 Sum_probs=69.7
Q ss_pred HHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCCCCCCCCCcEEEEeCCCCCCccccccc
Q 011033 41 KDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKIIEIEGCDALKSLPEAWM 120 (495)
Q Consensus 41 ~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 120 (495)
+..+..+...+++|++|++++|......|..++.+++|++|++++| .++..++++.+++|++|++++|. +..+|..
T Consensus 23 ~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~N~-l~~l~~~-- 98 (487)
T 3oja_A 23 KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLDLESLSTLRTLDLNNNY-VQELLVG-- 98 (487)
T ss_dssp HHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTS-CCEEEEECTTCTTCCEEECCSSE-EEEEEEC--
T ss_pred HHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCC-CCCCCcccccCCCCCEEEecCCc-CCCCCCC--
Confidence 3456666556679999999998443444567888999999999887 55544447778888888888876 4444432
Q ss_pred cCCCCCccEEecccCccccccccccCCCCccEEEecc
Q 011033 121 CDTNSSLETLYIEHCRTLTYLAGVQLPRSLKRLDILS 157 (495)
Q Consensus 121 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~ 157 (495)
++|+.|++++| .++.++.. .+++|+.|++++
T Consensus 99 ----~~L~~L~L~~N-~l~~~~~~-~l~~L~~L~L~~ 129 (487)
T 3oja_A 99 ----PSIETLHAANN-NISRVSCS-RGQGKKNIYLAN 129 (487)
T ss_dssp ----TTCCEEECCSS-CCCCEEEC-CCSSCEEEECCS
T ss_pred ----CCcCEEECcCC-cCCCCCcc-ccCCCCEEECCC
Confidence 56777777664 33333332 234555555554
No 66
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.78 E-value=8.4e-18 Score=157.54 Aligned_cols=201 Identities=21% Similarity=0.263 Sum_probs=135.0
Q ss_pred CCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcc-cccCCCCCCccEEEeeCCCCcccc-CCCCCCCCCCc
Q 011033 219 LPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKIL-PSGLHNLGQLQEIEIWECENLVSF-PEGGLPCAKLS 296 (495)
Q Consensus 219 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~l~~l-~~~~~~~~~L~ 296 (495)
+++++++|+++++......+..+..+++|++|++++|. +..+ +..+..+++|++|++++|..++.+ +..+..+++|+
T Consensus 30 ~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~ 108 (285)
T 1ozn_A 30 IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLH 108 (285)
T ss_dssp CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCC
T ss_pred CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCc-cceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCC
Confidence 45789999998877666656678888999999998864 4444 667888899999999988656666 45677788899
Q ss_pred EEEecCccccccccccccCCCCcceeEecc-ccccccCC--CCCCccceeEeeccCccchhhhcccccCCCCCccceEEe
Q 011033 297 KLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSLEED--GLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTI 373 (495)
Q Consensus 297 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l 373 (495)
.|++++|......|..+..+++|++|++++ .+..++.. ..+++|++|++++|. +...... .+.++++|++|++
T Consensus 109 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~---~~~~l~~L~~L~l 184 (285)
T 1ozn_A 109 TLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPER---AFRGLHSLDRLLL 184 (285)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEECTT---TTTTCTTCCEEEC
T ss_pred EEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc-ccccCHH---HhcCccccCEEEC
Confidence 999988865444456677888888888887 66666543 346677777777775 2222221 4566677777777
Q ss_pred eccccccccchhhhccccccCCCCCCCceeeeccccccccccc-ccccCCCCCeEeccCCC
Q 011033 374 EGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSS-SIVDLQNLTHLNLVDCP 433 (495)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~ 433 (495)
++| .+..+.... +..+++|+.|++++ +.++.++. .+..+++|++|++++|+
T Consensus 185 ~~n--~l~~~~~~~------~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 185 HQN--RVAHVHPHA------FRDLGRLMTLYLFA-NNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp CSS--CCCEECTTT------TTTCTTCCEEECCS-SCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred CCC--cccccCHhH------ccCcccccEeeCCC-CcCCcCCHHHcccCcccCEEeccCCC
Confidence 776 444442211 12345666666666 45555553 45666666666666654
No 67
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.78 E-value=1.4e-21 Score=196.59 Aligned_cols=288 Identities=19% Similarity=0.170 Sum_probs=161.7
Q ss_pred cccccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCcccc-ccccCCC----CccEEEEeCCCC
Q 011033 14 LLQDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLP-QSSLSLS----SLREIEIYKCSS 88 (495)
Q Consensus 14 ~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~-~~~~~l~----~L~~L~l~~~~~ 88 (495)
.+..+++|++|++++| .++......++..+..+ ++|++|++++|......+ .....++ +|++|++++| .
T Consensus 23 ~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~l~~~----~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n-~ 96 (461)
T 1z7x_W 23 LLPLLQQCQVVRLDDC-GLTEARCKDISSALRVN----PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC-C 96 (461)
T ss_dssp HHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTC----TTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTS-C
T ss_pred HHhhcCCccEEEccCC-CCCHHHHHHHHHHHHhC----CCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCC-C
Confidence 3678999999999996 46644333333456666 999999999985322222 2233455 7999999998 5
Q ss_pred CCC-----CCC-CCCCCCCcEEEEeCCCCCCcccccccc---CCCCCccEEecccCcccccc-----ccc-cCCCCccEE
Q 011033 89 LVS-----FPE-VALPSKLKIIEIEGCDALKSLPEAWMC---DTNSSLETLYIEHCRTLTYL-----AGV-QLPRSLKRL 153 (495)
Q Consensus 89 l~~-----l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~l~~~-----~~~-~~~~~L~~L 153 (495)
++. ++. +..+++|++|++++|......+..+.. ...++|++|++++|. ++.. +.. ..+++|+.|
T Consensus 97 i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L 175 (461)
T 1z7x_W 97 LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEPLASVLRAKPDFKEL 175 (461)
T ss_dssp CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCTTCCEE
T ss_pred CCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHHHHHHHHhhCCCCCEE
Confidence 653 232 788999999999998832222222211 112579999999974 4432 221 346899999
Q ss_pred EeccCCCccccccccccccCCCCccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCC
Q 011033 154 DILSCDNIRTLTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPK 233 (495)
Q Consensus 154 ~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 233 (495)
+++++. +....+ ..+. .......++++.|++++| .++..- ...++..+ .-.++|++|++++|..
T Consensus 176 ~L~~n~-i~~~~~-~~l~------~~l~~~~~~L~~L~L~~n-~l~~~~-~~~l~~~l------~~~~~L~~L~Ls~n~l 239 (461)
T 1z7x_W 176 TVSNND-INEAGV-RVLC------QGLKDSPCQLEALKLESC-GVTSDN-CRDLCGIV------ASKASLRELALGSNKL 239 (461)
T ss_dssp ECCSSB-CHHHHH-HHHH------HHHHHSCCCCCEEECTTS-CCBTTH-HHHHHHHH------HHCTTCCEEECCSSBC
T ss_pred ECcCCC-cchHHH-HHHH------HHHhcCCCCceEEEccCC-CCcHHH-HHHHHHHH------HhCCCccEEeccCCcC
Confidence 999864 432210 0010 000001235777777775 232210 00000000 0125677777776654
Q ss_pred chhh-----hhhcCCCCCCcEEeeeCCCCCCc-----ccccCCCCCCccEEEeeCCCCcccc-----CC-CCCCCCCCcE
Q 011033 234 LESI-----AERLDNNTSLETINISGCENLKI-----LPSGLHNLGQLQEIEIWECENLVSF-----PE-GGLPCAKLSK 297 (495)
Q Consensus 234 ~~~~-----~~~~~~~~~L~~L~l~~~~~~~~-----l~~~~~~l~~L~~L~l~~~~~l~~l-----~~-~~~~~~~L~~ 297 (495)
.+.. +..+..+++|+.|++++|. +.. ++..+..+++|++|++++|. ++.. .. .....++|+.
T Consensus 240 ~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~ 317 (461)
T 1z7x_W 240 GDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRVLRAKESLKELSLAGNE-LGDEGARLLCETLLEPGCQLES 317 (461)
T ss_dssp HHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHHHHHHHHHHHTSTTCCCCE
T ss_pred ChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHHHHHhhCCCcceEECCCCC-CchHHHHHHHHHhccCCcccee
Confidence 3321 1223356777777777753 333 44455566777777777763 3321 11 1112346777
Q ss_pred EEecCcccccc----ccccccCCCCcceeEecc
Q 011033 298 LRIYGCERLEA----LPKGLHNLTSLQQLTIGG 326 (495)
Q Consensus 298 L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~ 326 (495)
|++++|..... ++..+..+++|++|++++
T Consensus 318 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 350 (461)
T 1z7x_W 318 LWVKSCSFTAACCSHFSSVLAQNRFLLELQISN 350 (461)
T ss_dssp EECTTSCCBGGGHHHHHHHHHHCSSCCEEECCS
T ss_pred eEcCCCCCchHHHHHHHHHHhhCCCccEEEccC
Confidence 77777653222 334445556666666655
No 68
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.78 E-value=1e-17 Score=158.68 Aligned_cols=128 Identities=19% Similarity=0.192 Sum_probs=63.5
Q ss_pred CCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCC-cccccCCCCCCccEEEeeCCCCcccc-CCCCCCCCCCcEE
Q 011033 221 PSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLK-ILPSGLHNLGQLQEIEIWECENLVSF-PEGGLPCAKLSKL 298 (495)
Q Consensus 221 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~l~~~~~~l~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L 298 (495)
++|+.|++++|......+..+..+++|++|++++|.... .+|..+..+++|++|++++| .++.+ +..+..+++|+.|
T Consensus 126 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L 204 (306)
T 2z66_A 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVL 204 (306)
T ss_dssp TTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEE
T ss_pred cCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC-CcCCcCHHHhcCCCCCCEE
Confidence 345555555444444444445555666666666543222 24555556666666666665 33333 3345555666666
Q ss_pred EecCccccccccccccCCCCcceeEecc-ccccccCC--C-CCCccceeEeeccC
Q 011033 299 RIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSLEED--G-LPTNLHSLHIWGNM 349 (495)
Q Consensus 299 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~--~-~~~~L~~L~l~~~~ 349 (495)
++++|......+..+..+++|++|++++ .+...... . .+++|++|++++|.
T Consensus 205 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 205 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp ECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred ECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 6666543222222445555555555555 43333221 1 12355555555554
No 69
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.76 E-value=1.1e-17 Score=152.45 Aligned_cols=180 Identities=14% Similarity=0.095 Sum_probs=114.5
Q ss_pred cCCCCCCccEEEeeCCCCccccCC-CCCCCCCCcEEEecCcccccccc-ccccCCCCcceeEecc-ccccccCCCCCCcc
Q 011033 264 GLHNLGQLQEIEIWECENLVSFPE-GGLPCAKLSKLRIYGCERLEALP-KGLHNLTSLQQLTIGG-ELPSLEEDGLPTNL 340 (495)
Q Consensus 264 ~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~-~l~~~~~~~~~~~L 340 (495)
.+.++++|++|++++|..++.++. .+..+++|+.|++++|..++.++ ..+..+++|++|++++ .+..+|....+++|
T Consensus 50 ~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L 129 (239)
T 2xwt_C 50 AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYST 129 (239)
T ss_dssp TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCCCTTCCBC
T ss_pred HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcccccccccccc
Confidence 344444555555554432444433 33344455555555422233333 2344555555555555 44444443444555
Q ss_pred c---eeEeeccCccchhhhcccccCCCCCccc-eEEeeccccccccchhhhccccccCCCCCCCceeeeccccccccccc
Q 011033 341 H---SLHIWGNMEIWKSMIERGRGFHRFSSLR-HLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSS 416 (495)
Q Consensus 341 ~---~L~l~~~~~~~~~~~~~~~~~~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~ 416 (495)
+ +|++++|..+...... .+.++++|+ +|++++| .+..++... +.. ++|+.|++++++.++.++.
T Consensus 130 ~~L~~L~l~~N~~l~~i~~~---~~~~l~~L~~~L~l~~n--~l~~i~~~~------~~~-~~L~~L~L~~n~~l~~i~~ 197 (239)
T 2xwt_C 130 DIFFILEITDNPYMTSIPVN---AFQGLCNETLTLKLYNN--GFTSVQGYA------FNG-TKLDAVYLNKNKYLTVIDK 197 (239)
T ss_dssp CSEEEEEEESCTTCCEECTT---TTTTTBSSEEEEECCSC--CCCEECTTT------TTT-CEEEEEECTTCTTCCEECT
T ss_pred ccccEEECCCCcchhhcCcc---cccchhcceeEEEcCCC--CCcccCHhh------cCC-CCCCEEEcCCCCCcccCCH
Confidence 5 8888888434433333 578899999 9999998 777777643 123 6899999999667888875
Q ss_pred -ccccC-CCCCeEeccCCCCCCCCCCCCCccccceeeccCCch
Q 011033 417 -SIVDL-QNLTHLNLVDCPKLKYFPEKGLPSSLLQLSIYRCPL 457 (495)
Q Consensus 417 -~~~~~-~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~ 457 (495)
.+..+ ++|++|++++ +.++.+|.. .+++|++|.++++..
T Consensus 198 ~~~~~l~~~L~~L~l~~-N~l~~l~~~-~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 198 DAFGGVYSGPSLLDVSQ-TSVTALPSK-GLEHLKELIARNTWT 238 (239)
T ss_dssp TTTTTCSBCCSEEECTT-CCCCCCCCT-TCTTCSEEECTTC--
T ss_pred HHhhccccCCcEEECCC-CccccCChh-HhccCceeeccCccC
Confidence 67888 9999999999 568888876 578999999999864
No 70
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.76 E-value=9.7e-18 Score=157.09 Aligned_cols=98 Identities=15% Similarity=0.175 Sum_probs=57.0
Q ss_pred cEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCcccc-ccccCCCCccEEEEeCCCCCCCCCC--CCCC
Q 011033 22 RRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLP-QSSLSLSSLREIEIYKCSSLVSFPE--VALP 98 (495)
Q Consensus 22 ~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~-~~~~~l~~L~~L~l~~~~~l~~l~~--~~~~ 98 (495)
++++.++ .+++.+|.+ + +++|++|++++| .+..++ ..+..+++|++|++++| .++.+++ +..+
T Consensus 14 ~~~~c~~-~~l~~ip~~-----~------~~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l 79 (285)
T 1ozn_A 14 VTTSCPQ-QGLQAVPVG-----I------PAASQRIFLHGN-RISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGL 79 (285)
T ss_dssp CEEECCS-SCCSSCCTT-----C------CTTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTC
T ss_pred eEEEcCc-CCcccCCcC-----C------CCCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCc
Confidence 5666666 566666553 1 166777777776 334444 44667777777777776 4554432 6666
Q ss_pred CCCcEEEEeCCCCCCcc-ccccccCCCCCccEEecccC
Q 011033 99 SKLKIIEIEGCDALKSL-PEAWMCDTNSSLETLYIEHC 135 (495)
Q Consensus 99 ~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~ 135 (495)
++|++|++++|..+..+ +..+... ++|++|++++|
T Consensus 80 ~~L~~L~l~~n~~l~~~~~~~~~~l--~~L~~L~l~~n 115 (285)
T 1ozn_A 80 ALLEQLDLSDNAQLRSVDPATFHGL--GRLHTLHLDRC 115 (285)
T ss_dssp TTCCEEECCSCTTCCCCCTTTTTTC--TTCCEEECTTS
T ss_pred cCCCEEeCCCCCCccccCHHHhcCC--cCCCEEECCCC
Confidence 77777777776534444 3333323 55666666553
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.74 E-value=8.9e-18 Score=159.42 Aligned_cols=249 Identities=17% Similarity=0.148 Sum_probs=134.8
Q ss_pred ccccccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCC-cccccccc-------CCCCccEEEEe
Q 011033 13 ELLQDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGL-VKLPQSSL-------SLSSLREIEIY 84 (495)
Q Consensus 13 ~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l-~~l~~~~~-------~l~~L~~L~l~ 84 (495)
+.+...++|++|++++ +.+ .+|.+ +.. .|+.|++++|... ..+|..+. .+++|++|+++
T Consensus 37 ~~~~~~~~L~~l~l~~-n~l-~~p~~-----~~~------~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~ 103 (312)
T 1wwl_A 37 ELYGGGRSLEYLLKRV-DTE-ADLGQ-----FTD------IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLE 103 (312)
T ss_dssp EEEEEEEECTTHHHHC-CTT-CCCHH-----HHH------HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEE
T ss_pred EEEccCCCceeEeecc-ccc-ccHHH-----HHH------HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEcc
Confidence 3456677888888888 456 66653 443 2888889887442 24555444 68899999999
Q ss_pred CCCCCCCCCC-C--CCCCCCcEEEEeCCCCCCccccccccC---CCCCccEEecccCccccccccc--cCCCCccEEEec
Q 011033 85 KCSSLVSFPE-V--ALPSKLKIIEIEGCDALKSLPEAWMCD---TNSSLETLYIEHCRTLTYLAGV--QLPRSLKRLDIL 156 (495)
Q Consensus 85 ~~~~l~~l~~-~--~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~ 156 (495)
+|.....+|. + +.+++|++|++++|. +...|..+... ..++|++|++++|. ++.++.. ..+++|+.|+++
T Consensus 104 ~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls 181 (312)
T 1wwl_A 104 NLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLS 181 (312)
T ss_dssp EEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEEECC
T ss_pred CCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEEECC
Confidence 9843335665 3 778899999999987 44446544322 11567777777643 4443321 445556666655
Q ss_pred cCCCccccccccccccCCCCccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCch-
Q 011033 157 SCDNIRTLTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLE- 235 (495)
Q Consensus 157 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~- 235 (495)
++.-.....++..+ .... .++|++|++++|....
T Consensus 182 ~N~l~~~~~~~~~~--------------------------------------------~~~~-l~~L~~L~L~~N~l~~~ 216 (312)
T 1wwl_A 182 DNPELGERGLISAL--------------------------------------------CPLK-FPTLQVLALRNAGMETP 216 (312)
T ss_dssp SCTTCHHHHHHHHS--------------------------------------------CTTS-CTTCCEEECTTSCCCCH
T ss_pred CCCcCcchHHHHHH--------------------------------------------Hhcc-CCCCCEEECCCCcCcch
Confidence 54221111000000 0001 1455556665554331
Q ss_pred -hhh-hhcCCCCCCcEEeeeCCCCCCccc-ccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCcccccccccc
Q 011033 236 -SIA-ERLDNNTSLETINISGCENLKILP-SGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKG 312 (495)
Q Consensus 236 -~~~-~~~~~~~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~ 312 (495)
.++ ..+..+++|+.|++++|......+ ..+..+++|++|++++| .++.+|..+. ++|+.|++++|. ++.+|.
T Consensus 217 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N~-l~~~p~- 291 (312)
T 1wwl_A 217 SGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT-GLKQVPKGLP--AKLSVLDLSYNR-LDRNPS- 291 (312)
T ss_dssp HHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTS-CCSSCCSSCC--SEEEEEECCSSC-CCSCCC-
T ss_pred HHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCC-ccChhhhhcc--CCceEEECCCCC-CCCChh-
Confidence 222 233455666666666643322222 23344566666666665 3445554333 456666666653 344443
Q ss_pred ccCCCCcceeEecc
Q 011033 313 LHNLTSLQQLTIGG 326 (495)
Q Consensus 313 l~~l~~L~~L~l~~ 326 (495)
+..+++|++|++++
T Consensus 292 ~~~l~~L~~L~L~~ 305 (312)
T 1wwl_A 292 PDELPQVGNLSLKG 305 (312)
T ss_dssp TTTSCEEEEEECTT
T ss_pred HhhCCCCCEEeccC
Confidence 44555555555544
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.72 E-value=2.4e-17 Score=166.07 Aligned_cols=213 Identities=15% Similarity=0.109 Sum_probs=148.3
Q ss_pred CCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEe
Q 011033 221 PSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRI 300 (495)
Q Consensus 221 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l 300 (495)
++|+.|++++|......|..+..+++|+.|++++|. +...+. +..+++|++|++++| .++.++. .++|+.|++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~~----~~~L~~L~L 106 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNN-YVQELLV----GPSIETLHA 106 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEE-CTTCTTCCEEECCSS-EEEEEEE----CTTCCEEEC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcc-cccCCCCCEEEecCC-cCCCCCC----CCCcCEEEC
Confidence 578888888777666666678888888888888754 333333 777888888888887 5555543 257888888
Q ss_pred cCccccccccccccCCCCcceeEecc-ccccccCC--CCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccc
Q 011033 301 YGCERLEALPKGLHNLTSLQQLTIGG-ELPSLEED--GLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCD 377 (495)
Q Consensus 301 ~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 377 (495)
++|. +..++. ..+++|+.|++++ .+..+++. +.+++|+.|++++|.. ....+. .....+++|+.|++++|
T Consensus 107 ~~N~-l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~--~l~~~l~~L~~L~Ls~N- 179 (487)
T 3oja_A 107 ANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI-DTVNFA--ELAASSDTLEHLNLQYN- 179 (487)
T ss_dssp CSSC-CCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCC-CEEEGG--GGGGGTTTCCEEECTTS-
T ss_pred cCCc-CCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCC-CCcChH--HHhhhCCcccEEecCCC-
Confidence 8875 343432 3457788888888 66665443 4467888888888863 323333 12336788888888887
Q ss_pred cccccchhhhccccccCCCCCCCceeeecccccccccccccccCCCCCeEeccCCCCCCCCCCC-CCccccceeeccCCc
Q 011033 378 DDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSSIVDLQNLTHLNLVDCPKLKYFPEK-GLPSSLLQLSIYRCP 456 (495)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~c~ 456 (495)
.+..++... .+++|+.|++++ +.++.+|..+..+++|+.|++++| .+..+|.. ..+++|+.|++++|+
T Consensus 180 -~l~~~~~~~--------~l~~L~~L~Ls~-N~l~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 180 -FIYDVKGQV--------VFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp -CCCEEECCC--------CCTTCCEEECCS-SCCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCC
T ss_pred -ccccccccc--------cCCCCCEEECCC-CCCCCCCHhHcCCCCccEEEecCC-cCcccchhhccCCCCCEEEcCCCC
Confidence 666664433 467888888888 677777777788888888888884 57777764 346788888888886
Q ss_pred hh
Q 011033 457 LM 458 (495)
Q Consensus 457 ~l 458 (495)
..
T Consensus 249 l~ 250 (487)
T 3oja_A 249 FH 250 (487)
T ss_dssp BC
T ss_pred Cc
Confidence 54
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.72 E-value=6.7e-18 Score=160.30 Aligned_cols=200 Identities=14% Similarity=0.083 Sum_probs=123.7
Q ss_pred CCCCCcEEeeeCCCCCCcccccC--CCCCCccEEEeeCCCCccccCCCCCCC-----CCCcEEEecCccccccccccccC
Q 011033 243 NNTSLETINISGCENLKILPSGL--HNLGQLQEIEIWECENLVSFPEGGLPC-----AKLSKLRIYGCERLEALPKGLHN 315 (495)
Q Consensus 243 ~~~~L~~L~l~~~~~~~~l~~~~--~~l~~L~~L~l~~~~~l~~l~~~~~~~-----~~L~~L~l~~~~~~~~~~~~l~~ 315 (495)
.+++|++|++++|.....+|..+ ..+++|++|++++| .++..|..+..+ ++|++|++++|......|..+..
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 56677777777755444555544 66677777777776 344444333332 57777777776543333356667
Q ss_pred CCCcceeEecc-cccc----ccCC--CCCCccceeEeeccCccch-hhhcccccCCCCCccceEEeeccccccccchhhh
Q 011033 316 LTSLQQLTIGG-ELPS----LEED--GLPTNLHSLHIWGNMEIWK-SMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLED 387 (495)
Q Consensus 316 l~~L~~L~l~~-~l~~----~~~~--~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 387 (495)
+++|++|++++ .+.. .+.. ..+++|++|++++|..... .... ..+.++++|++|++++| .+.......
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~~~~l~~L~~L~Ls~N--~l~~~~~~~ 247 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCS--ALAAARVQLQGLDLSHN--SLRDAAGAP 247 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHH--HHHHTTCCCSEEECTTS--CCCSSCCCS
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHH--HHHhcCCCCCEEECCCC--cCCcccchh
Confidence 77777777776 3221 1112 4567777777777763210 1111 23456778888888887 555533100
Q ss_pred ccccccCCCCCCCceeeecccccccccccccccCCCCCeEeccCCCCCCCCCCCCCccccceeeccCCc
Q 011033 388 KRLGTALPLPASLTSLRIVDFPNLERLSSSIVDLQNLTHLNLVDCPKLKYFPEKGLPSSLLQLSIYRCP 456 (495)
Q Consensus 388 ~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~ 456 (495)
.+..+++|+.|++++ +.++.+|..+. ++|++|++++ +.++.+|....+++|++|++++++
T Consensus 248 -----~~~~l~~L~~L~Ls~-N~l~~ip~~~~--~~L~~L~Ls~-N~l~~~p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 248 -----SCDWPSQLNSLNLSF-TGLKQVPKGLP--AKLSVLDLSY-NRLDRNPSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp -----CCCCCTTCCEEECTT-SCCSSCCSSCC--SEEEEEECCS-SCCCSCCCTTTSCEEEEEECTTCT
T ss_pred -----hhhhcCCCCEEECCC-CccChhhhhcc--CCceEEECCC-CCCCCChhHhhCCCCCEEeccCCC
Confidence 112456888888888 56778876555 7888888888 457777765557888888888886
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.70 E-value=1.6e-16 Score=148.07 Aligned_cols=200 Identities=18% Similarity=0.160 Sum_probs=130.1
Q ss_pred CCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcc-cccCCCCCCccEEEeeCCCCccccC-CCCCCCCCC
Q 011033 218 NLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKIL-PSGLHNLGQLQEIEIWECENLVSFP-EGGLPCAKL 295 (495)
Q Consensus 218 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~~~~L 295 (495)
.+++++++|++++|......+..+..+++|++|++++|. +..+ +..+.++++|++|++++| .++.++ ..+..+++|
T Consensus 25 ~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L 102 (276)
T 2z62_A 25 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSL 102 (276)
T ss_dssp SSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTC
T ss_pred CCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCC-ccCccChhhhcCCccc
Confidence 345679999998887666555578888999999998864 4444 346788889999999888 455544 467778889
Q ss_pred cEEEecCccccccccccccCCCCcceeEecc-ccccc--cCC-CCCCccceeEeeccCccchhhhcccccCCCCCccc--
Q 011033 296 SKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSL--EED-GLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLR-- 369 (495)
Q Consensus 296 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~--~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~-- 369 (495)
+.|++++|......+..+..+++|++|++++ .+..+ +.. ..+++|++|++++|.. ...... .+..+++|+
T Consensus 103 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l-~~~~~~---~~~~l~~L~~l 178 (276)
T 2z62_A 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI-QSIYCT---DLRVLHQMPLL 178 (276)
T ss_dssp CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC-CEECGG---GGHHHHTCTTC
T ss_pred cEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCC-CcCCHH---Hhhhhhhcccc
Confidence 9999988864433333677888888888887 55542 222 4456777777777763 222222 233344444
Q ss_pred --eEEeeccccccccchhhhccccccCCCCCCCceeeeccccccccccc-ccccCCCCCeEeccCCC
Q 011033 370 --HLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSS-SIVDLQNLTHLNLVDCP 433 (495)
Q Consensus 370 --~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~ 433 (495)
.|++++| .+..++... ....+|+.|++++ +.++.+|. .+..+++|++|++++|+
T Consensus 179 ~l~L~ls~n--~l~~~~~~~-------~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 179 NLSLDLSLN--PMNFIQPGA-------FKEIRLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp CEEEECCSS--CCCEECTTS-------SCSCCEEEEECCS-SCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred ceeeecCCC--cccccCccc-------cCCCcccEEECCC-CceeecCHhHhcccccccEEEccCCc
Confidence 6777776 555554432 1223677777777 45666665 34667777777777654
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.69 E-value=8.5e-16 Score=143.91 Aligned_cols=172 Identities=21% Similarity=0.181 Sum_probs=107.6
Q ss_pred CCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEE
Q 011033 219 LPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKL 298 (495)
Q Consensus 219 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L 298 (495)
+++.++.|++++|......+..+..+++|+.|++++| .+..++.. ..+++|++|++++| .++.++..+..+++|+.|
T Consensus 29 ~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L 105 (290)
T 1p9a_G 29 LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVL 105 (290)
T ss_dssp CCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEE
T ss_pred CCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCEEECCCC-cCCcCchhhccCCCCCEE
Confidence 3467888888877776666667888888888888874 45555443 67788888888887 566777767777788888
Q ss_pred EecCcccccccc-ccccCCCCcceeEecc-ccccccCC--CCCCccceeEeeccCccchhhhcccccCCCCCccceEEee
Q 011033 299 RIYGCERLEALP-KGLHNLTSLQQLTIGG-ELPSLEED--GLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIE 374 (495)
Q Consensus 299 ~l~~~~~~~~~~-~~l~~l~~L~~L~l~~-~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 374 (495)
++++|. ++.+| ..+..+++|++|++++ .+..++.. ..+++|+.|++++|. +..... ..+.++++|+.|+++
T Consensus 106 ~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~---~~~~~l~~L~~L~L~ 180 (290)
T 1p9a_G 106 DVSFNR-LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN-LTELPA---GLLNGLENLDTLLLQ 180 (290)
T ss_dssp ECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CSCCCT---TTTTTCTTCCEEECC
T ss_pred ECCCCc-CcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc-CCccCH---HHhcCcCCCCEEECC
Confidence 888775 44443 4577777777777777 66665543 234556666666554 221111 134455555555555
Q ss_pred ccccccccchhhhccccccCCCCCCCceeeecc
Q 011033 375 GCDDDMVSFPLEDKRLGTALPLPASLTSLRIVD 407 (495)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 407 (495)
+| .+..++... ...++|+.|++++
T Consensus 181 ~N--~l~~ip~~~-------~~~~~L~~l~L~~ 204 (290)
T 1p9a_G 181 EN--SLYTIPKGF-------FGSHLLPFAFLHG 204 (290)
T ss_dssp SS--CCCCCCTTT-------TTTCCCSEEECCS
T ss_pred CC--cCCccChhh-------cccccCCeEEeCC
Confidence 55 444444432 1223455555554
No 76
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.69 E-value=4.6e-16 Score=141.63 Aligned_cols=199 Identities=20% Similarity=0.193 Sum_probs=152.7
Q ss_pred CCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccc-cCCCCCCccEEEeeCCCCccccCC-CCCCCCCCc
Q 011033 219 LPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPS-GLHNLGQLQEIEIWECENLVSFPE-GGLPCAKLS 296 (495)
Q Consensus 219 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~ 296 (495)
++++++.|++++|......+..+..+++|+.|++++|..+..++. .+.++++|++|++++|..++.++. .+..+++|+
T Consensus 29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK 108 (239)
T ss_dssp CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence 557899999998876665555788999999999999765766654 678899999999998336777775 567788999
Q ss_pred EEEecCccccccccccccCCCCcc---eeEecc--ccccccCC--CCCCccc-eeEeeccCccchhhhcccccCCCCCcc
Q 011033 297 KLRIYGCERLEALPKGLHNLTSLQ---QLTIGG--ELPSLEED--GLPTNLH-SLHIWGNMEIWKSMIERGRGFHRFSSL 368 (495)
Q Consensus 297 ~L~l~~~~~~~~~~~~l~~l~~L~---~L~l~~--~l~~~~~~--~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~l~~L 368 (495)
.|++++|. ++.+|. +..+++|+ +|++++ .+..++.. ..+++|+ +|++++|.. . .++. ..+.. ++|
T Consensus 109 ~L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l-~-~i~~--~~~~~-~~L 181 (239)
T 2xwt_C 109 FLGIFNTG-LKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF-T-SVQG--YAFNG-TKL 181 (239)
T ss_dssp EEEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCC-C-EECT--TTTTT-CEE
T ss_pred EEeCCCCC-Cccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCC-c-ccCH--hhcCC-CCC
Confidence 99999986 566876 88888888 999988 67777653 4578999 999999873 3 2222 23444 799
Q ss_pred ceEEeeccccccccchhhhccccccCCCC-CCCceeeecccccccccccccccCCCCCeEeccCCCC
Q 011033 369 RHLTIEGCDDDMVSFPLEDKRLGTALPLP-ASLTSLRIVDFPNLERLSSSIVDLQNLTHLNLVDCPK 434 (495)
Q Consensus 369 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~ 434 (495)
++|++++| ..+..++... +... ++|+.|++++ +.++.+|.. .+++|+.|+++++..
T Consensus 182 ~~L~L~~n-~~l~~i~~~~------~~~l~~~L~~L~l~~-N~l~~l~~~--~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 182 DAVYLNKN-KYLTVIDKDA------FGGVYSGPSLLDVSQ-TSVTALPSK--GLEHLKELIARNTWT 238 (239)
T ss_dssp EEEECTTC-TTCCEECTTT------TTTCSBCCSEEECTT-CCCCCCCCT--TCTTCSEEECTTC--
T ss_pred CEEEcCCC-CCcccCCHHH------hhccccCCcEEECCC-CccccCChh--HhccCceeeccCccC
Confidence 99999998 2266665532 2345 7999999999 788888854 789999999998764
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.68 E-value=9.8e-16 Score=143.49 Aligned_cols=128 Identities=16% Similarity=0.090 Sum_probs=90.4
Q ss_pred ccccccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCC
Q 011033 13 ELLQDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSF 92 (495)
Q Consensus 13 ~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l 92 (495)
..++.+++++++++++ ++++.+|.+ + +++++.|++++|......+..+..+++|++|++++| .++.+
T Consensus 4 C~~~~l~~l~~l~~~~-~~l~~ip~~-----~------~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~ 70 (290)
T 1p9a_G 4 CEVSKVASHLEVNCDK-RNLTALPPD-----L------PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKL 70 (290)
T ss_dssp SEEECSTTCCEEECTT-SCCSSCCSC-----C------CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEE
T ss_pred ccccccCCccEEECCC-CCCCcCCCC-----C------CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcc
Confidence 3467888999999999 678888775 2 278999999998543444567889999999999997 67777
Q ss_pred CCCCCCCCCcEEEEeCCCCCCccccccccCCCCCccEEecccCccccccccc--cCCCCccEEEecc
Q 011033 93 PEVALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGV--QLPRSLKRLDILS 157 (495)
Q Consensus 93 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~ 157 (495)
+..+.+++|++|++++|. +..+|..+... ++|+.|++++| .++.++.. ..+++|+.|++++
T Consensus 71 ~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l--~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~ 133 (290)
T 1p9a_G 71 QVDGTLPVLGTLDLSHNQ-LQSLPLLGQTL--PALTVLDVSFN-RLTSLPLGALRGLGELQELYLKG 133 (290)
T ss_dssp ECCSCCTTCCEEECCSSC-CSSCCCCTTTC--TTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTT
T ss_pred cCCCCCCcCCEEECCCCc-CCcCchhhccC--CCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCC
Confidence 767788889999998877 56677655444 67777777764 34444321 3334444444444
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.68 E-value=1.8e-15 Score=140.32 Aligned_cols=194 Identities=21% Similarity=0.283 Sum_probs=116.3
Q ss_pred CCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCccc-ccCCCCCCccEEEeeCCCCccccCC-CCCCCCCCcEE
Q 011033 221 PSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILP-SGLHNLGQLQEIEIWECENLVSFPE-GGLPCAKLSKL 298 (495)
Q Consensus 221 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L 298 (495)
...+.++++++. ++.+|..+. ++++.|++++|. +..++ ..+.++++|++|++++| .++.++. .+..+++|+.|
T Consensus 16 ~~~~~l~~~~~~-l~~ip~~~~--~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L 90 (270)
T 2o6q_A 16 NNKNSVDCSSKK-LTAIPSNIP--ADTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETL 90 (270)
T ss_dssp TTTTEEECTTSC-CSSCCSCCC--TTCSEEECCSSC-CSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEE
T ss_pred CCCCEEEccCCC-CCccCCCCC--CCCCEEECcCCC-CCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEE
Confidence 356778877544 445555332 678888888754 44454 46778888888888887 5566665 34567788888
Q ss_pred EecCcccccccc-ccccCCCCcceeEecc-ccccccCC--CCCCccceeEeeccCccchhhhcccccCCCCCccceEEee
Q 011033 299 RIYGCERLEALP-KGLHNLTSLQQLTIGG-ELPSLEED--GLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIE 374 (495)
Q Consensus 299 ~l~~~~~~~~~~-~~l~~l~~L~~L~l~~-~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 374 (495)
++++|. ++.+| ..+..+++|++|++++ .+..++.. ..+++|++|++++|. +..... ..+.++++|++|+++
T Consensus 91 ~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~---~~~~~l~~L~~L~L~ 165 (270)
T 2o6q_A 91 WVTDNK-LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPK---GVFDKLTSLKELRLY 165 (270)
T ss_dssp ECCSSC-CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCT---TTTTTCTTCCEEECC
T ss_pred ECCCCc-CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCH---hHccCCcccceeEec
Confidence 888876 44443 3567777888888777 66655543 345666666666664 221211 135556666666666
Q ss_pred ccccccccchhhhccccccCCCCCCCceeeeccccccccccc-ccccCCCCCeEeccCCC
Q 011033 375 GCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSS-SIVDLQNLTHLNLVDCP 433 (495)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~ 433 (495)
+| .+..++... +..+++|+.|++++ +.++.++. .+..+++|+.|++++|+
T Consensus 166 ~n--~l~~~~~~~------~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 166 NN--QLKRVPEGA------FDKLTELKTLKLDN-NQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp SS--CCSCCCTTT------TTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CC--cCcEeChhH------hccCCCcCEEECCC-CcCCcCCHHHhccccCCCEEEecCCC
Confidence 65 444444321 12344566666666 34555544 34555666666666544
No 79
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.68 E-value=4.4e-16 Score=145.08 Aligned_cols=205 Identities=22% Similarity=0.248 Sum_probs=155.6
Q ss_pred hhhhhhcCCCCCCcEEeeeCCCCCCccc-ccCCCCCCccEEEeeCCCCccccCC-CCCCCCCCcEEEecCcccccccccc
Q 011033 235 ESIAERLDNNTSLETINISGCENLKILP-SGLHNLGQLQEIEIWECENLVSFPE-GGLPCAKLSKLRIYGCERLEALPKG 312 (495)
Q Consensus 235 ~~~~~~~~~~~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~ 312 (495)
..+|..+ .++|++|++++|. +..++ ..+.++++|++|++++| .++.++. .+..+++|+.|++++|......+..
T Consensus 20 ~~ip~~l--~~~l~~L~ls~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (276)
T 2z62_A 20 YKIPDNL--PFSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 95 (276)
T ss_dssp SSCCSSS--CTTCCEEECTTCC-CCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred cccCCCC--CCCccEEECCCCc-ccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCccChhh
Confidence 3455433 2589999999864 55554 47889999999999998 5666654 6778899999999999755444567
Q ss_pred ccCCCCcceeEecc-ccccccC--CCCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhcc
Q 011033 313 LHNLTSLQQLTIGG-ELPSLEE--DGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKR 389 (495)
Q Consensus 313 l~~l~~L~~L~l~~-~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 389 (495)
+..+++|++|++++ .+..++. ...+++|++|++++|......++. .+.++++|++|++++| .+..++...
T Consensus 96 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~---~~~~l~~L~~L~Ls~N--~l~~~~~~~-- 168 (276)
T 2z62_A 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE---YFSNLTNLEHLDLSSN--KIQSIYCTD-- 168 (276)
T ss_dssp TTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG---GGGGCTTCCEEECCSS--CCCEECGGG--
T ss_pred hcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCch---hhccCCCCCEEECCCC--CCCcCCHHH--
Confidence 89999999999999 7776655 356789999999999843322333 6788999999999998 666654422
Q ss_pred ccccCCCCCCCc----eeeecccccccccccccccCCCCCeEeccCCCCCCCCCCCC--CccccceeeccCCc
Q 011033 390 LGTALPLPASLT----SLRIVDFPNLERLSSSIVDLQNLTHLNLVDCPKLKYFPEKG--LPSSLLQLSIYRCP 456 (495)
Q Consensus 390 ~~~~~~~~~~L~----~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~--~~~~L~~L~l~~c~ 456 (495)
+..+++|+ .|++++ +.++.++.......+|++|++++| .++.++... .+++|++|++++||
T Consensus 169 ----~~~l~~L~~l~l~L~ls~-n~l~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 169 ----LRVLHQMPLLNLSLDLSL-NPMNFIQPGAFKEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp ----GHHHHTCTTCCEEEECCS-SCCCEECTTSSCSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred ----hhhhhhccccceeeecCC-CcccccCccccCCCcccEEECCCC-ceeecCHhHhcccccccEEEccCCc
Confidence 11233455 899999 778888776556669999999995 488888753 37999999999664
No 80
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.68 E-value=3.8e-16 Score=147.72 Aligned_cols=192 Identities=17% Similarity=0.169 Sum_probs=113.0
Q ss_pred HhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCCCCCCCCCcEEEEeCCCCCCccccccccCC
Q 011033 44 QQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKIIEIEGCDALKSLPEAWMCDT 123 (495)
Q Consensus 44 ~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 123 (495)
+..+ ++|++|++++| .+..++ .+..+++|++|++++| .++.++.+..+++|++|++++|. +..++ .+...
T Consensus 37 ~~~l----~~L~~L~l~~~-~i~~l~-~~~~l~~L~~L~L~~n-~i~~~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~l- 106 (308)
T 1h6u_A 37 QADL----DGITTLSAFGT-GVTTIE-GVQYLNNLIGLELKDN-QITDLAPLKNLTKITELELSGNP-LKNVS-AIAGL- 106 (308)
T ss_dssp HHHH----HTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGGGTTCCSCCEEECCSCC-CSCCG-GGTTC-
T ss_pred HHHc----CCcCEEEeeCC-CccCch-hhhccCCCCEEEccCC-cCCCChhHccCCCCCEEEccCCc-CCCch-hhcCC-
Confidence 4556 77888888876 456666 3777788888888777 56666667777788888888776 44444 23333
Q ss_pred CCCccEEecccCccccccccccCCCCccEEEeccCCCccccccccccccCCCCccCcccCccccceeeecCCCCCccccc
Q 011033 124 NSSLETLYIEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFS 203 (495)
Q Consensus 124 ~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 203 (495)
++|++|++++| .++.++....+++|+.|+++++ .++.+ +. +..
T Consensus 107 -~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n-~l~~~--~~-----------------------------l~~--- 149 (308)
T 1h6u_A 107 -QSIKTLDLTST-QITDVTPLAGLSNLQVLYLDLN-QITNI--SP-----------------------------LAG--- 149 (308)
T ss_dssp -TTCCEEECTTS-CCCCCGGGTTCTTCCEEECCSS-CCCCC--GG-----------------------------GGG---
T ss_pred -CCCCEEECCCC-CCCCchhhcCCCCCCEEECCCC-ccCcC--cc-----------------------------ccC---
Confidence 67777777774 3555554555566666666654 23222 10 000
Q ss_pred CCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCcc
Q 011033 204 QNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLV 283 (495)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~ 283 (495)
.++|+.|++++|.... ++. +..+++|+.|++++| .+..++. +..+++|++|++++| .+.
T Consensus 150 ----------------l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~L~~N-~l~ 208 (308)
T 1h6u_A 150 ----------------LTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDN-KISDISP-LASLPNLIEVHLKNN-QIS 208 (308)
T ss_dssp ----------------CTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECTTS-CCC
T ss_pred ----------------CCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCC-ccCcChh-hcCCCCCCEEEccCC-ccC
Confidence 1455556665554332 222 556666666666664 3344433 556666666666666 344
Q ss_pred ccCCCCCCCCCCcEEEecCcc
Q 011033 284 SFPEGGLPCAKLSKLRIYGCE 304 (495)
Q Consensus 284 ~l~~~~~~~~~L~~L~l~~~~ 304 (495)
.++. +..+++|+.|++++|+
T Consensus 209 ~~~~-l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 209 DVSP-LANTSNLFIVTLTNQT 228 (308)
T ss_dssp BCGG-GTTCTTCCEEEEEEEE
T ss_pred cccc-ccCCCCCCEEEccCCe
Confidence 4442 4455666666666654
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.68 E-value=2.3e-16 Score=146.61 Aligned_cols=224 Identities=14% Similarity=0.159 Sum_probs=119.7
Q ss_pred cccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCCCCC
Q 011033 18 ICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVAL 97 (495)
Q Consensus 18 ~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~ 97 (495)
+..+..+++.+ ..+.++.. +..+ ++|+.|++++| .+..++. +..+++|++|++++| .+..++.+..
T Consensus 18 ~~~l~~l~l~~-~~~~~~~~------~~~l----~~L~~L~l~~~-~i~~~~~-l~~l~~L~~L~l~~n-~l~~~~~l~~ 83 (272)
T 3rfs_A 18 FAETIKANLKK-KSVTDAVT------QNEL----NSIDQIIANNS-DIKSVQG-IQYLPNVRYLALGGN-KLHDISALKE 83 (272)
T ss_dssp HHHHHHHHHTC-SCTTSEEC------HHHH----TTCCEEECTTS-CCCCCTT-GGGCTTCCEEECTTS-CCCCCGGGTT
T ss_pred HHHHHHHHhcC-cccccccc------cccc----cceeeeeeCCC-Ccccccc-cccCCCCcEEECCCC-CCCCchhhcC
Confidence 44555556665 34444333 5566 77777777776 4455543 667777777777776 5665656777
Q ss_pred CCCCcEEEEeCCCCCCccccc-cccCCCCCccEEecccCccccccccc--cCCCCccEEEeccCCCccccccccccccCC
Q 011033 98 PSKLKIIEIEGCDALKSLPEA-WMCDTNSSLETLYIEHCRTLTYLAGV--QLPRSLKRLDILSCDNIRTLTVEEGIQSSS 174 (495)
Q Consensus 98 ~~~L~~L~l~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 174 (495)
+++|++|++++|. +..++.. +... ++|++|++++| .++.++.. ..+++|+.|+++++ .++.+ +...
T Consensus 84 l~~L~~L~L~~n~-l~~~~~~~~~~l--~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~--~~~~---- 152 (272)
T 3rfs_A 84 LTNLTYLILTGNQ-LQSLPNGVFDKL--TNLKELVLVEN-QLQSLPDGVFDKLTNLTYLNLAHN-QLQSL--PKGV---- 152 (272)
T ss_dssp CTTCCEEECTTSC-CCCCCTTTTTTC--TTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCC--CTTT----
T ss_pred CCCCCEEECCCCc-cCccChhHhcCC--cCCCEEECCCC-cCCccCHHHhccCCCCCEEECCCC-ccCcc--CHHH----
Confidence 7777777777776 4444433 3333 66777777764 34444332 34455555555553 23222 1100
Q ss_pred CCccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeC
Q 011033 175 SSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISG 254 (495)
Q Consensus 175 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 254 (495)
+ . -.++|+.|++++|......+..+..+++|+.|++++
T Consensus 153 -----------------------~------------------~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 190 (272)
T 3rfs_A 153 -----------------------F------------------D-KLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQ 190 (272)
T ss_dssp -----------------------T------------------T-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred -----------------------h------------------c-cCccCCEEECCCCCcCccCHHHhcCCccCCEEECCC
Confidence 0 0 014455555555544433333455566666666666
Q ss_pred CCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCccccccccccccC
Q 011033 255 CENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHN 315 (495)
Q Consensus 255 ~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 315 (495)
|......+..+..+++|+.|++++|+.. +.|++++.+++..|.....+|.+++.
T Consensus 191 N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip~~~~~ 244 (272)
T 3rfs_A 191 NQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGS 244 (272)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGBBCTTSC
T ss_pred CcCCccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCcccCcccc
Confidence 4322222333555666666666665321 23445555555555544455544433
No 82
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.67 E-value=3.2e-15 Score=138.67 Aligned_cols=195 Identities=21% Similarity=0.265 Sum_probs=149.2
Q ss_pred ccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccc-c
Q 011033 186 LLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPS-G 264 (495)
Q Consensus 186 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~-~ 264 (495)
..+.+++++ ..++.+ + ..+++++++|++++|......+..+..+++|++|++++| .+..++. .
T Consensus 17 ~~~~l~~~~-~~l~~i-------------p-~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~ 80 (270)
T 2o6q_A 17 NKNSVDCSS-KKLTAI-------------P-SNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGI 80 (270)
T ss_dssp TTTEEECTT-SCCSSC-------------C-SCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTT
T ss_pred CCCEEEccC-CCCCcc-------------C-CCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhh
Confidence 355666665 445544 2 234578999999988766655668999999999999985 4556654 4
Q ss_pred CCCCCCccEEEeeCCCCccccCC-CCCCCCCCcEEEecCccccccccccccCCCCcceeEecc-ccccccCC--CCCCcc
Q 011033 265 LHNLGQLQEIEIWECENLVSFPE-GGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSLEED--GLPTNL 340 (495)
Q Consensus 265 ~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~--~~~~~L 340 (495)
+..+++|++|++++| .++.++. .+..+++|+.|++++|......+..+..+++|++|++++ .+..++.. ..+++|
T Consensus 81 ~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 159 (270)
T 2o6q_A 81 FKELKNLETLWVTDN-KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL 159 (270)
T ss_dssp TSSCTTCCEEECCSS-CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred hcCCCCCCEEECCCC-cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccc
Confidence 578999999999998 5666665 567789999999999875444445678999999999999 88887764 567999
Q ss_pred ceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccCCCCCCCceeeecccc
Q 011033 341 HSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFP 409 (495)
Q Consensus 341 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 409 (495)
++|++++|.. ...... .+.++++|++|++++| .+..++... +..+++|+.|++++++
T Consensus 160 ~~L~L~~n~l-~~~~~~---~~~~l~~L~~L~L~~N--~l~~~~~~~------~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 160 KELRLYNNQL-KRVPEG---AFDKLTELKTLKLDNN--QLKRVPEGA------FDSLEKLKMLQLQENP 216 (270)
T ss_dssp CEEECCSSCC-SCCCTT---TTTTCTTCCEEECCSS--CCSCCCTTT------TTTCTTCCEEECCSSC
T ss_pred ceeEecCCcC-cEeChh---HhccCCCcCEEECCCC--cCCcCCHHH------hccccCCCEEEecCCC
Confidence 9999999973 323322 5788999999999998 777776632 2356799999999854
No 83
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.67 E-value=5.6e-16 Score=146.59 Aligned_cols=193 Identities=16% Similarity=0.181 Sum_probs=134.7
Q ss_pred CCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEe
Q 011033 221 PSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRI 300 (495)
Q Consensus 221 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l 300 (495)
++|++|+++++... .++ .+..+++|+.|++++| .+..++. +..+++|++|++++| .++.++ .+..+++|+.|++
T Consensus 41 ~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 41 DGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGN-PLKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEEEC
T ss_pred CCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCC-cCCCch-hhcCCCCCCEEEC
Confidence 67888888876543 344 4677888888888875 4555655 778888888888887 455554 4556778888888
Q ss_pred cCccccccccccccCCCCcceeEecc-ccccccCCCCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccccc
Q 011033 301 YGCERLEALPKGLHNLTSLQQLTIGG-ELPSLEEDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDD 379 (495)
Q Consensus 301 ~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 379 (495)
++|. ++.++. +..+++|++|++++ .+..++....+++|++|++++|.. ... . .+.++++|+.|++++| .
T Consensus 115 ~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l-~~~-~----~l~~l~~L~~L~l~~n--~ 184 (308)
T 1h6u_A 115 TSTQ-ITDVTP-LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQV-SDL-T----PLANLSKLTTLKADDN--K 184 (308)
T ss_dssp TTSC-CCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCC-CCC-G----GGTTCTTCCEEECCSS--C
T ss_pred CCCC-CCCchh-hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcC-CCC-h----hhcCCCCCCEEECCCC--c
Confidence 8875 555653 77888888888888 776666656677888888888763 221 1 2567778888888887 5
Q ss_pred cccchhhhccccccCCCCCCCceeeecccccccccccccccCCCCCeEeccCCCCCCCCCC
Q 011033 380 MVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSSIVDLQNLTHLNLVDCPKLKYFPE 440 (495)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~ 440 (495)
+..++.-. .+++|+.|++++ +.++.++ .+..+++|++|++++|+ ++..|.
T Consensus 185 l~~~~~l~--------~l~~L~~L~L~~-N~l~~~~-~l~~l~~L~~L~l~~N~-i~~~~~ 234 (308)
T 1h6u_A 185 ISDISPLA--------SLPNLIEVHLKN-NQISDVS-PLANTSNLFIVTLTNQT-ITNQPV 234 (308)
T ss_dssp CCCCGGGG--------GCTTCCEEECTT-SCCCBCG-GGTTCTTCCEEEEEEEE-EECCCE
T ss_pred cCcChhhc--------CCCCCCEEEccC-CccCccc-cccCCCCCCEEEccCCe-eecCCe
Confidence 66555422 456788888888 5666666 36777888888888754 555444
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.67 E-value=3.5e-16 Score=148.31 Aligned_cols=225 Identities=12% Similarity=0.034 Sum_probs=139.9
Q ss_pred CccEEEeecCCCchhh-hh--hcCCCCCCcEEeeeCCCCCCcccccC--CCCCCccEEEeeCCCCccccC----CCCCCC
Q 011033 222 SLKSLFVWYCPKLESI-AE--RLDNNTSLETINISGCENLKILPSGL--HNLGQLQEIEIWECENLVSFP----EGGLPC 292 (495)
Q Consensus 222 ~L~~L~l~~~~~~~~~-~~--~~~~~~~L~~L~l~~~~~~~~l~~~~--~~l~~L~~L~l~~~~~l~~l~----~~~~~~ 292 (495)
.++.+.+.++...... .. .+..+++|++|++++|......|..+ ..+++|++|++++|..-...+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 3566666655433211 11 12234567888887765555555555 677788888888774332222 122356
Q ss_pred CCCcEEEecCccccccccccccCCCCcceeEecc-cccc---ccCC---CCCCccceeEeeccCccchhhhcccccCCCC
Q 011033 293 AKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPS---LEED---GLPTNLHSLHIWGNMEIWKSMIERGRGFHRF 365 (495)
Q Consensus 293 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~---~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l 365 (495)
++|+.|++++|......+..+..+++|++|++++ .+.. ++.. +.+++|++|++++|.. +.........+.++
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~~l 223 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM-ETPTGVCAALAAAG 223 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC-CCHHHHHHHHHHHT
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC-CchHHHHHHHHhcC
Confidence 6788888887765444445677778888888877 4332 2211 3567888888888863 21111000124677
Q ss_pred CccceEEeeccccccccc-hhhhccccccCCCCCCCceeeecccccccccccccccCCCCCeEeccCCCCCCCCCCCCCc
Q 011033 366 SSLRHLTIEGCDDDMVSF-PLEDKRLGTALPLPASLTSLRIVDFPNLERLSSSIVDLQNLTHLNLVDCPKLKYFPEKGLP 444 (495)
Q Consensus 366 ~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~ 444 (495)
++|++|++++| .+... |.... ....+++|++|++++ +.++.+|..+. ++|++|++++| .++.+|....+
T Consensus 224 ~~L~~L~Ls~N--~l~~~~p~~~~----~~~~~~~L~~L~Ls~-N~l~~lp~~~~--~~L~~L~Ls~N-~l~~~~~~~~l 293 (310)
T 4glp_A 224 VQPHSLDLSHN--SLRATVNPSAP----RCMWSSALNSLNLSF-AGLEQVPKGLP--AKLRVLDLSSN-RLNRAPQPDEL 293 (310)
T ss_dssp CCCSSEECTTS--CCCCCCCSCCS----SCCCCTTCCCEECCS-SCCCSCCSCCC--SCCSCEECCSC-CCCSCCCTTSC
T ss_pred CCCCEEECCCC--CCCccchhhHH----hccCcCcCCEEECCC-CCCCchhhhhc--CCCCEEECCCC-cCCCCchhhhC
Confidence 88899999888 55554 33221 112246899999988 67778887554 78999999984 58877665567
Q ss_pred cccceeeccCCch
Q 011033 445 SSLLQLSIYRCPL 457 (495)
Q Consensus 445 ~~L~~L~l~~c~~ 457 (495)
++|++|++++|+.
T Consensus 294 ~~L~~L~L~~N~l 306 (310)
T 4glp_A 294 PEVDNLTLDGNPF 306 (310)
T ss_dssp CCCSCEECSSTTT
T ss_pred CCccEEECcCCCC
Confidence 8899999988863
No 85
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.66 E-value=4.8e-15 Score=142.94 Aligned_cols=222 Identities=20% Similarity=0.192 Sum_probs=161.3
Q ss_pred CCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCccc-ccCCCCCCccEEEeeCCCCccccCC-CCCCCCCC
Q 011033 218 NLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILP-SGLHNLGQLQEIEIWECENLVSFPE-GGLPCAKL 295 (495)
Q Consensus 218 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L 295 (495)
.+++++++|++++|......+.+|..+++|++|++++|...+.++ ..+.++++++.+....+..+..++. .+..+++|
T Consensus 27 ~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L 106 (350)
T 4ay9_X 27 DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNL 106 (350)
T ss_dssp TCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTC
T ss_pred CcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccc
Confidence 345789999999876554444578899999999999977666665 4577888887765554446777754 66778899
Q ss_pred cEEEecCccccccccc-cccCCCCcceeEecc--ccccccCC---CCCCccceeEeeccCccchhhhcccccCCCCCccc
Q 011033 296 SKLRIYGCERLEALPK-GLHNLTSLQQLTIGG--ELPSLEED---GLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLR 369 (495)
Q Consensus 296 ~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~--~l~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~ 369 (495)
+.|++++|. +..+|. .+....++..+++.+ .+..++.. +....++.|++++|.. .. ++. ......+|+
T Consensus 107 ~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i-~~-i~~---~~f~~~~L~ 180 (350)
T 4ay9_X 107 QYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI-QE-IHN---SAFNGTQLD 180 (350)
T ss_dssp CEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC-CE-ECT---TSSTTEEEE
T ss_pred ccccccccc-cccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc-cC-CCh---hhccccchh
Confidence 999999886 444443 455666777888866 66666553 2345788899999873 32 222 344556899
Q ss_pred eEEeeccccccccchhhhccccccCCCCCCCceeeecccccccccccccccCCCCCeEeccCCCCCCCCCCCCCccccce
Q 011033 370 HLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSSIVDLQNLTHLNLVDCPKLKYFPEKGLPSSLLQ 449 (495)
Q Consensus 370 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~ 449 (495)
++++.++ ..+..++.+. +..+++|+.|++++ +.++.+|. ..+.+|+.|.+.++++++.+|....+++|+.
T Consensus 181 ~l~l~~~-n~l~~i~~~~------f~~l~~L~~LdLs~-N~l~~lp~--~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~ 250 (350)
T 4ay9_X 181 ELNLSDN-NNLEELPNDV------FHGASGPVILDISR-TRIHSLPS--YGLENLKKLRARSTYNLKKLPTLEKLVALME 250 (350)
T ss_dssp EEECTTC-TTCCCCCTTT------TTTEECCSEEECTT-SCCCCCCS--SSCTTCCEEECTTCTTCCCCCCTTTCCSCCE
T ss_pred HHhhccC-CcccCCCHHH------hccCcccchhhcCC-CCcCccCh--hhhccchHhhhccCCCcCcCCCchhCcChhh
Confidence 9999864 3788777643 34567899999999 68898885 3477888888888899999998666789999
Q ss_pred eeccCC
Q 011033 450 LSIYRC 455 (495)
Q Consensus 450 L~l~~c 455 (495)
+++.+.
T Consensus 251 l~l~~~ 256 (350)
T 4ay9_X 251 ASLTYP 256 (350)
T ss_dssp EECSCH
T ss_pred CcCCCC
Confidence 988764
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.65 E-value=5.2e-16 Score=147.12 Aligned_cols=198 Identities=17% Similarity=0.139 Sum_probs=140.8
Q ss_pred CCccEEEeecCCCchhhhhhc--CCCCCCcEEeeeCCCCCCccc----ccCCCCCCccEEEeeCCCCccccC-CCCCCCC
Q 011033 221 PSLKSLFVWYCPKLESIAERL--DNNTSLETINISGCENLKILP----SGLHNLGQLQEIEIWECENLVSFP-EGGLPCA 293 (495)
Q Consensus 221 ~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~l~----~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~~~ 293 (495)
++|++|++++|......|..+ ..+++|++|++++|......+ ..+..+++|++|++++|. +..++ ..+..++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~ 169 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH-SPAFSCEQVRAFP 169 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS-SCCCCTTSCCCCT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC-cchhhHHHhccCC
Confidence 458888888887777777666 778888888888865443222 234467888888888884 44444 4666778
Q ss_pred CCcEEEecCcccccc--cc--ccccCCCCcceeEecc-ccccccCC-----CCCCccceeEeeccCccchhhhcccccCC
Q 011033 294 KLSKLRIYGCERLEA--LP--KGLHNLTSLQQLTIGG-ELPSLEED-----GLPTNLHSLHIWGNMEIWKSMIERGRGFH 363 (495)
Q Consensus 294 ~L~~L~l~~~~~~~~--~~--~~l~~l~~L~~L~l~~-~l~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 363 (495)
+|+.|++++|..... ++ ..+..+++|++|++++ .+..++.. ..+++|++|++++|.. ....+.....+.
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l-~~~~p~~~~~~~ 248 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSL-RATVNPSAPRCM 248 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCC-CCCCCSCCSSCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCC-CccchhhHHhcc
Confidence 888888888864432 22 2346788888888888 66655431 3457899999999873 333232111233
Q ss_pred CCCccceEEeeccccccccchhhhccccccCCCCCCCceeeecccccccccccccccCCCCCeEeccCCC
Q 011033 364 RFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSSIVDLQNLTHLNLVDCP 433 (495)
Q Consensus 364 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~ 433 (495)
.+++|++|++++| .+..++.. .+++|+.|++++ +.++.+|. +..+++|++|++++|+
T Consensus 249 ~~~~L~~L~Ls~N--~l~~lp~~---------~~~~L~~L~Ls~-N~l~~~~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 249 WSSALNSLNLSFA--GLEQVPKG---------LPAKLRVLDLSS-NRLNRAPQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCTTCCCEECCSS--CCCSCCSC---------CCSCCSCEECCS-CCCCSCCC-TTSCCCCSCEECSSTT
T ss_pred CcCcCCEEECCCC--CCCchhhh---------hcCCCCEEECCC-CcCCCCch-hhhCCCccEEECcCCC
Confidence 3479999999998 77777764 347999999999 78888874 7889999999999965
No 87
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.65 E-value=4.1e-15 Score=143.39 Aligned_cols=195 Identities=21% Similarity=0.208 Sum_probs=147.8
Q ss_pred CCccEEEeecCCCchhhhh-hcCCCCCCcEEeeeCCCCCCcc-cccCCCCCCccEEEeeCCCCccccCC-CCCCCCCCcE
Q 011033 221 PSLKSLFVWYCPKLESIAE-RLDNNTSLETINISGCENLKIL-PSGLHNLGQLQEIEIWECENLVSFPE-GGLPCAKLSK 297 (495)
Q Consensus 221 ~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~ 297 (495)
++|++|++++|...+.++. +|.+++++.++.+.+++.+..+ +..+..+++|++|++++| .+..++. .+....++..
T Consensus 54 ~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~ 132 (350)
T 4ay9_X 54 GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVL 132 (350)
T ss_dssp TTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEE
T ss_pred CCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccccccc-ccccCCchhhcccchhhh
Confidence 6788888888877666554 5677888877666555666666 456788889999999888 5565554 3445557788
Q ss_pred EEecCccccccccc-cccCC-CCcceeEecc-ccccccCC-CCCCccceeEeeccCccchhhhcccccCCCCCccceEEe
Q 011033 298 LRIYGCERLEALPK-GLHNL-TSLQQLTIGG-ELPSLEED-GLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTI 373 (495)
Q Consensus 298 L~l~~~~~~~~~~~-~l~~l-~~L~~L~l~~-~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l 373 (495)
+++.++..+..++. .+..+ ..++.|++++ .++.++.. ....+|+++++.++..+...... .+.++++|+.|++
T Consensus 133 l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~---~f~~l~~L~~LdL 209 (350)
T 4ay9_X 133 LDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPND---VFHGASGPVILDI 209 (350)
T ss_dssp EEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTT---TTTTEECCSEEEC
T ss_pred hhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHH---HhccCcccchhhc
Confidence 88887777777764 44554 4688888888 78777665 34568899999877666644433 6789999999999
Q ss_pred eccccccccchhhhccccccCCCCCCCceeeecccccccccccccccCCCCCeEeccC
Q 011033 374 EGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSSIVDLQNLTHLNLVD 431 (495)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~ 431 (495)
++| .+..++.. .+.+|+.|.+.++.+++.+| .+..+++|+.+++.+
T Consensus 210 s~N--~l~~lp~~---------~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 210 SRT--RIHSLPSY---------GLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTY 255 (350)
T ss_dssp TTS--CCCCCCSS---------SCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSC
T ss_pred CCC--CcCccChh---------hhccchHhhhccCCCcCcCC-CchhCcChhhCcCCC
Confidence 998 88888874 35789999999999999999 688999999999875
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.63 E-value=6.7e-17 Score=155.21 Aligned_cols=218 Identities=15% Similarity=0.148 Sum_probs=118.2
Q ss_pred ccEEEeecCCCchhhhhhcCCC--CCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCcc-c-cCCCCCCCCCCcEE
Q 011033 223 LKSLFVWYCPKLESIAERLDNN--TSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLV-S-FPEGGLPCAKLSKL 298 (495)
Q Consensus 223 L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~-~-l~~~~~~~~~L~~L 298 (495)
+++++++++... +..+..+ ++++.|++.++. +...+..+..+++|++|++++|. +. . ++..+..+++|+.|
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~-l~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSF-MDQPLAEHFSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCE-ECSCCCSCCCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCcc-ccccchhhccCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEE
Confidence 556666654433 2223333 566666666643 33333334556677777776663 33 2 44445556677777
Q ss_pred EecCccccccccccccCCCCcceeEecc--cccc--ccC-CCCCCccceeEeeccCccchh-hhcccccCCCCC-ccceE
Q 011033 299 RIYGCERLEALPKGLHNLTSLQQLTIGG--ELPS--LEE-DGLPTNLHSLHIWGNMEIWKS-MIERGRGFHRFS-SLRHL 371 (495)
Q Consensus 299 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~--~l~~--~~~-~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~l~-~L~~L 371 (495)
++++|......+..+..+++|++|++++ .+.. ++. ...+++|++|++++|..+.+. ++. .+..++ +|++|
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~---~~~~l~~~L~~L 200 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV---AVAHVSETITQL 200 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH---HHHHSCTTCCEE
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH---HHHhcccCCCEE
Confidence 7776653334455566667777777766 2332 222 234566777777777334432 222 456666 77777
Q ss_pred Eeecccccc--ccchhhhccccccCCCCCCCceeeeccccccc-ccccccccCCCCCeEeccCCCCCCCCC--CCCCccc
Q 011033 372 TIEGCDDDM--VSFPLEDKRLGTALPLPASLTSLRIVDFPNLE-RLSSSIVDLQNLTHLNLVDCPKLKYFP--EKGLPSS 446 (495)
Q Consensus 372 ~l~~~~~~~--~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~l~~~~~~~~~L~~L~l~~c~~l~~l~--~~~~~~~ 446 (495)
++++|...+ ..++... ..+++|+.|++++|..++ ..+..+..+++|++|++++|..+.... ....+++
T Consensus 201 ~l~~~~~~~~~~~l~~~~-------~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~ 273 (336)
T 2ast_B 201 NLSGYRKNLQKSDLSTLV-------RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT 273 (336)
T ss_dssp ECCSCGGGSCHHHHHHHH-------HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTT
T ss_pred EeCCCcccCCHHHHHHHH-------hhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCC
Confidence 777762111 2233222 134577777777765444 334456667777777777765333211 1122567
Q ss_pred cceeeccCC
Q 011033 447 LLQLSIYRC 455 (495)
Q Consensus 447 L~~L~l~~c 455 (495)
|++|++++|
T Consensus 274 L~~L~l~~~ 282 (336)
T 2ast_B 274 LKTLQVFGI 282 (336)
T ss_dssp CCEEECTTS
T ss_pred CCEEeccCc
Confidence 777777777
No 89
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.58 E-value=2e-14 Score=133.42 Aligned_cols=147 Identities=25% Similarity=0.307 Sum_probs=67.3
Q ss_pred CCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcc-cccCCCCCCccEEEeeCCCCccccCC-CCCCCCCCcEE
Q 011033 221 PSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKIL-PSGLHNLGQLQEIEIWECENLVSFPE-GGLPCAKLSKL 298 (495)
Q Consensus 221 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L 298 (495)
++|++|++++|.... + ..+..+++|++|++++|. +..+ +..+..+++|++|++++| .++.++. .+..+++|+.|
T Consensus 63 ~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 138 (272)
T 3rfs_A 63 PNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKELVLVEN-QLQSLPDGVFDKLTNLTYL 138 (272)
T ss_dssp TTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCc-cCccChhHhcCCcCCCEEECCCC-cCCccCHHHhccCCCCCEE
Confidence 455555555544332 2 234555555555555532 2233 223455555555555555 3333333 23445555555
Q ss_pred EecCcccccccc-ccccCCCCcceeEecc-ccccccCC--CCCCccceeEeeccCccchhhhcccccCCCCCccceEEee
Q 011033 299 RIYGCERLEALP-KGLHNLTSLQQLTIGG-ELPSLEED--GLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIE 374 (495)
Q Consensus 299 ~l~~~~~~~~~~-~~l~~l~~L~~L~l~~-~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 374 (495)
++++|. ++.++ ..+..+++|++|++++ .+..++.. ..+++|++|++++|. +....+. .+.++++|+.|+++
T Consensus 139 ~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~---~~~~l~~L~~L~l~ 213 (272)
T 3rfs_A 139 NLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ-LKSVPDG---VFDRLTSLQYIWLH 213 (272)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTT---TTTTCTTCCEEECC
T ss_pred ECCCCc-cCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc-CCccCHH---HHhCCcCCCEEEcc
Confidence 555553 22332 2344555555555555 44444332 234455555555544 2211111 34444555555555
Q ss_pred cc
Q 011033 375 GC 376 (495)
Q Consensus 375 ~~ 376 (495)
+|
T Consensus 214 ~N 215 (272)
T 3rfs_A 214 DN 215 (272)
T ss_dssp SS
T ss_pred CC
Confidence 44
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.55 E-value=1.9e-15 Score=145.06 Aligned_cols=106 Identities=13% Similarity=0.236 Sum_probs=65.9
Q ss_pred CCccEEEeecCCCchh-hhhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccc--cCCCCCCCCCCcE
Q 011033 221 PSLKSLFVWYCPKLES-IAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVS--FPEGGLPCAKLSK 297 (495)
Q Consensus 221 ~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~--l~~~~~~~~~L~~ 297 (495)
++|++|++++|..... ++..+..+++|++|++++|......+..+..+++|++|++++|..++. ++..+..+++|+.
T Consensus 93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~ 172 (336)
T 2ast_B 93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE 172 (336)
T ss_dssp BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCE
Confidence 5677777777664433 666677777778887777643334455566677777777777754442 4444555667777
Q ss_pred EEecCcccccc--ccccccCCC-CcceeEecc
Q 011033 298 LRIYGCERLEA--LPKGLHNLT-SLQQLTIGG 326 (495)
Q Consensus 298 L~l~~~~~~~~--~~~~l~~l~-~L~~L~l~~ 326 (495)
|++++|..++. ++..+..++ +|++|++++
T Consensus 173 L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 173 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp EECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred EcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 77777733443 344455555 555555544
No 91
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.54 E-value=2.1e-14 Score=134.51 Aligned_cols=174 Identities=17% Similarity=0.196 Sum_probs=129.1
Q ss_pred CCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCccccccccccccCCCCcce
Q 011033 242 DNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQ 321 (495)
Q Consensus 242 ~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 321 (495)
..+++|+.|++++| .+..++ .+..+++|++|++++| .++.++. +..+++|+.|++++|. ++.++ .+..+++|++
T Consensus 43 ~~l~~L~~L~l~~~-~i~~~~-~~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENK-VKDLS-SLKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC-CCCGG-GGTTCTTCCE
T ss_pred hhcCcccEEEccCC-CcccCh-hHhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCCc-CCCCh-hhccCCCCCE
Confidence 35678899999885 455564 4778899999999988 5666655 6778899999999885 55565 4888899999
Q ss_pred eEecc-ccccccCCCCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccCCCCCCC
Q 011033 322 LTIGG-ELPSLEEDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASL 400 (495)
Q Consensus 322 L~l~~-~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L 400 (495)
|++++ .+..++....+++|++|++++|.. ... . .+..+++|++|++++| .+..++.- ..+++|
T Consensus 117 L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l-~~~--~---~l~~l~~L~~L~L~~N--~l~~~~~l--------~~l~~L 180 (291)
T 1h6t_A 117 LSLEHNGISDINGLVHLPQLESLYLGNNKI-TDI--T---VLSRLTKLDTLSLEDN--QISDIVPL--------AGLTKL 180 (291)
T ss_dssp EECTTSCCCCCGGGGGCTTCCEEECCSSCC-CCC--G---GGGGCTTCSEEECCSS--CCCCCGGG--------TTCTTC
T ss_pred EECCCCcCCCChhhcCCCCCCEEEccCCcC-Ccc--h---hhccCCCCCEEEccCC--ccccchhh--------cCCCcc
Confidence 99988 777776566778888888888863 222 2 4677888888888887 66665542 256788
Q ss_pred ceeeecccccccccccccccCCCCCeEeccCCCCCCCCCC
Q 011033 401 TSLRIVDFPNLERLSSSIVDLQNLTHLNLVDCPKLKYFPE 440 (495)
Q Consensus 401 ~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~ 440 (495)
+.|++++ +.++.++ .+..+++|+.|++++|+ +...+.
T Consensus 181 ~~L~L~~-N~i~~l~-~l~~l~~L~~L~l~~n~-i~~~~~ 217 (291)
T 1h6t_A 181 QNLYLSK-NHISDLR-ALAGLKNLDVLELFSQE-CLNKPI 217 (291)
T ss_dssp CEEECCS-SCCCBCG-GGTTCTTCSEEEEEEEE-EECCCE
T ss_pred CEEECCC-CcCCCCh-hhccCCCCCEEECcCCc-ccCCcc
Confidence 8888888 5777777 47788888888888854 444443
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.54 E-value=1.3e-13 Score=126.35 Aligned_cols=63 Identities=19% Similarity=0.355 Sum_probs=32.6
Q ss_pred CCCCCccceEEeeccccccccchhhhccccccCCCCCCCceeeeccccccccccc-ccccCCCCCeEeccCCC
Q 011033 362 FHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSS-SIVDLQNLTHLNLVDCP 433 (495)
Q Consensus 362 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~ 433 (495)
+.++++|++|++++| .+..++... +..+++|+.|++++ +.++.++. .+..+++|++|++++|+
T Consensus 127 ~~~l~~L~~L~Ls~N--~l~~~~~~~------~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 127 FDRLTKLKELRLNTN--QLQSIPAGA------FDKLTNLQTLSLST-NQLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp TTTCTTCCEEECCSS--CCCCCCTTT------TTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred hccCCcccEEECcCC--cCCccCHHH------cCcCcCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCCc
Confidence 445555556666555 444444321 12334566666655 44444443 45556666666666643
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.53 E-value=1.9e-13 Score=125.23 Aligned_cols=152 Identities=22% Similarity=0.235 Sum_probs=108.4
Q ss_pred CCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCC-CCCCCCCCcE
Q 011033 219 LPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPE-GGLPCAKLSK 297 (495)
Q Consensus 219 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~ 297 (495)
+++.++.|++++|......+..+..+++|++|++++|......+..+..+++|++|++++| .++.++. .+..+++|+.
T Consensus 33 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 111 (251)
T 3m19_A 33 IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN-QLASLPLGVFDHLTQLDK 111 (251)
T ss_dssp CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCE
T ss_pred CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC-cccccChhHhcccCCCCE
Confidence 4478899999988877766777888899999999886443333455788889999999888 5555554 5567788999
Q ss_pred EEecCccccccccc-cccCCCCcceeEecc-ccccccCC--CCCCccceeEeeccCccchhhhcccccCCCCCccceEEe
Q 011033 298 LRIYGCERLEALPK-GLHNLTSLQQLTIGG-ELPSLEED--GLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTI 373 (495)
Q Consensus 298 L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~-~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l 373 (495)
|++++|. ++.++. .+..+++|++|++++ .+..++.. ..+++|++|++++|.. ....+. .+.++++|+.|++
T Consensus 112 L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~---~~~~l~~L~~L~l 186 (251)
T 3m19_A 112 LYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL-QSVPHG---AFDRLGKLQTITL 186 (251)
T ss_dssp EECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-SCCCTT---TTTTCTTCCEEEC
T ss_pred EEcCCCc-CCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcC-CccCHH---HHhCCCCCCEEEe
Confidence 9998885 445544 467788888888888 77766653 4456777777777762 222222 4666777777777
Q ss_pred ecc
Q 011033 374 EGC 376 (495)
Q Consensus 374 ~~~ 376 (495)
++|
T Consensus 187 ~~N 189 (251)
T 3m19_A 187 FGN 189 (251)
T ss_dssp CSC
T ss_pred eCC
Confidence 776
No 94
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.53 E-value=6.7e-14 Score=142.26 Aligned_cols=186 Identities=26% Similarity=0.337 Sum_probs=113.2
Q ss_pred ccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCCCCCCCCCcEEEEeCCCCCCccccccccCCCCCccEEec
Q 011033 53 RLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYI 132 (495)
Q Consensus 53 ~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 132 (495)
+|+.|++++| .+..+|..+ +++|++|++++| .++.+| ..+++|++|++++|. +..+|. +. .+|+.|++
T Consensus 60 ~L~~L~Ls~n-~L~~lp~~l--~~~L~~L~Ls~N-~l~~ip--~~l~~L~~L~Ls~N~-l~~ip~-l~----~~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRL-NLSSLPDNL--PPQITVLEITQN-ALISLP--ELPASLEYLDACDNR-LSTLPE-LP----ASLKHLDV 127 (571)
T ss_dssp TCSEEECCSS-CCSCCCSCC--CTTCSEEECCSS-CCSCCC--CCCTTCCEEECCSSC-CSCCCC-CC----TTCCEEEC
T ss_pred CccEEEeCCC-CCCccCHhH--cCCCCEEECcCC-CCcccc--cccCCCCEEEccCCC-CCCcch-hh----cCCCEEEC
Confidence 7888888887 456677654 367888888887 666777 567888888888876 555666 33 26888888
Q ss_pred ccCccccccccccCCCCccEEEeccCCCccccccccccccCCCCccCcccCccccceeeecCCCCCcccccCCCCccccc
Q 011033 133 EHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLE 212 (495)
Q Consensus 133 ~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 212 (495)
++| .++.+|. .+++|+.|+++++ .++.+ +.
T Consensus 128 s~N-~l~~lp~--~l~~L~~L~Ls~N-~l~~l--p~-------------------------------------------- 157 (571)
T 3cvr_A 128 DNN-QLTMLPE--LPALLEYINADNN-QLTML--PE-------------------------------------------- 157 (571)
T ss_dssp CSS-CCSCCCC--CCTTCCEEECCSS-CCSCC--CC--------------------------------------------
T ss_pred CCC-cCCCCCC--cCccccEEeCCCC-ccCcC--CC--------------------------------------------
Confidence 874 4555665 5667777777664 34332 21
Q ss_pred ccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCc-------cEEEeeCCCCcccc
Q 011033 213 SLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQL-------QEIEIWECENLVSF 285 (495)
Q Consensus 213 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L-------~~L~l~~~~~l~~l 285 (495)
.+++|+.|++++|.... +|. +. ++|+.|++++| .+..+|. +.. +| +.|++++| .++.+
T Consensus 158 ------~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N-~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N-~l~~l 222 (571)
T 3cvr_A 158 ------LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTN-LLESLPA-VPV--RNHHSEETEIFFRCREN-RITHI 222 (571)
T ss_dssp ------CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSS-CCSSCCC-CC----------CCEEEECCSS-CCCCC
T ss_pred ------cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCC-CCCchhh-HHH--hhhcccccceEEecCCC-cceec
Confidence 11445555555444332 343 33 56666666664 3445554 332 55 77777766 55566
Q ss_pred CCCCCCCCCCcEEEecCccccccccccccC
Q 011033 286 PEGGLPCAKLSKLRIYGCERLEALPKGLHN 315 (495)
Q Consensus 286 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 315 (495)
|..+..+++|+.|++++|+....+|..+..
T Consensus 223 p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 223 PENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp CGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred CHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 665555667777777777655555554433
No 95
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.52 E-value=1.8e-15 Score=148.18 Aligned_cols=87 Identities=17% Similarity=0.064 Sum_probs=57.4
Q ss_pred HHhhhhhcccccceeecccccCCcc----ccccccCCCCccEEEEeCCCCCCC----CCC--------CCCCCCCcEEEE
Q 011033 43 QQQQLCELSCRLEYLRLSYCEGLVK----LPQSSLSLSSLREIEIYKCSSLVS----FPE--------VALPSKLKIIEI 106 (495)
Q Consensus 43 ~~~~l~~~~~~L~~L~ls~~~~l~~----l~~~~~~l~~L~~L~l~~~~~l~~----l~~--------~~~~~~L~~L~l 106 (495)
.+..+ ++|++|++++|..... ++..+..+++|++|++++| .+.. +|. +..+++|++|++
T Consensus 27 ~l~~~----~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~-~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 27 VLLED----DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp HHHHC----SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSC-CTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHhcC----CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCccc-ccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 36666 8888888888744332 3334667888888888887 3332 222 256788888888
Q ss_pred eCCCCCC----ccccccccCCCCCccEEecccCc
Q 011033 107 EGCDALK----SLPEAWMCDTNSSLETLYIEHCR 136 (495)
Q Consensus 107 ~~~~~~~----~~~~~~~~~~~~~L~~L~l~~~~ 136 (495)
++|.... .++..+... ++|++|++++|.
T Consensus 102 s~n~l~~~~~~~l~~~l~~~--~~L~~L~L~~n~ 133 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLSKH--TPLEHLYLHNNG 133 (386)
T ss_dssp CSCCCCTTTHHHHHHHHHHC--TTCCEEECCSSC
T ss_pred CCCcCCHHHHHHHHHHHHhC--CCCCEEECcCCC
Confidence 8877433 255555544 778888888764
No 96
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.52 E-value=9.4e-16 Score=150.12 Aligned_cols=95 Identities=11% Similarity=0.109 Sum_probs=67.6
Q ss_pred cCccccccccccEEecccccccccccchhhHHHHhhhhhcccccceeeccccc--CC-cccccc-------ccCCCCccE
Q 011033 11 HNELLQDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCE--GL-VKLPQS-------SLSLSSLRE 80 (495)
Q Consensus 11 ~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~--~l-~~l~~~-------~~~l~~L~~ 80 (495)
....+..+++|++|++++| .++......+...+..+ ++|++|++++|. .+ ..+|.. +..+++|++
T Consensus 24 l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~----~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~ 98 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGN-TIGTEAARWLSENIASK----KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHT 98 (386)
T ss_dssp TSHHHHHCSCCCEEECTTS-EECHHHHHHHHHTTTTC----TTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCE
T ss_pred HHHHHhcCCCccEEECCCC-CCCHHHHHHHHHHHHhC----CCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccE
Confidence 3456778999999999995 56654332122224445 999999999972 22 134433 378999999
Q ss_pred EEEeCCCCCCC-----CCC-CCCCCCCcEEEEeCCCC
Q 011033 81 IEIYKCSSLVS-----FPE-VALPSKLKIIEIEGCDA 111 (495)
Q Consensus 81 L~l~~~~~l~~-----l~~-~~~~~~L~~L~l~~~~~ 111 (495)
|++++| .++. ++. +..+++|++|++++|..
T Consensus 99 L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l 134 (386)
T 2ca6_A 99 VRLSDN-AFGPTAQEPLIDFLSKHTPLEHLYLHNNGL 134 (386)
T ss_dssp EECCSC-CCCTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred EECCCC-cCCHHHHHHHHHHHHhCCCCCEEECcCCCC
Confidence 999998 5554 332 67789999999999984
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.52 E-value=7.9e-14 Score=130.58 Aligned_cols=98 Identities=13% Similarity=0.142 Sum_probs=51.9
Q ss_pred cccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCCCCCCCCCcEEEEeCCCCCCccccccccCCCCCccEEe
Q 011033 52 CRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLY 131 (495)
Q Consensus 52 ~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 131 (495)
++|+.|++++| .+..++. +..+++|++|++++| .++.++.+..+++|++|++++|. +..++. +..+ ++|++|+
T Consensus 46 ~~L~~L~l~~~-~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~~l~~l~~L~~L~l~~n~-l~~~~~-l~~l--~~L~~L~ 118 (291)
T 1h6t_A 46 NSIDQIIANNS-DIKSVQG-IQYLPNVTKLFLNGN-KLTDIKPLANLKNLGWLFLDENK-VKDLSS-LKDL--KKLKSLS 118 (291)
T ss_dssp HTCCEEECTTS-CCCCCTT-GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCGGG-GTTC--TTCCEEE
T ss_pred CcccEEEccCC-CcccChh-HhcCCCCCEEEccCC-ccCCCcccccCCCCCEEECCCCc-CCCChh-hccC--CCCCEEE
Confidence 66666666665 4455543 566666666666665 45555546666666666666655 333332 2222 5555555
Q ss_pred cccCccccccccccCCCCccEEEecc
Q 011033 132 IEHCRTLTYLAGVQLPRSLKRLDILS 157 (495)
Q Consensus 132 l~~~~~l~~~~~~~~~~~L~~L~l~~ 157 (495)
+++| .++.++....+++|+.|++++
T Consensus 119 L~~n-~i~~~~~l~~l~~L~~L~l~~ 143 (291)
T 1h6t_A 119 LEHN-GISDINGLVHLPQLESLYLGN 143 (291)
T ss_dssp CTTS-CCCCCGGGGGCTTCCEEECCS
T ss_pred CCCC-cCCCChhhcCCCCCCEEEccC
Confidence 5553 233333333334444444443
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.47 E-value=1.6e-13 Score=141.01 Aligned_cols=122 Identities=12% Similarity=0.148 Sum_probs=79.1
Q ss_pred cccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCCCCC
Q 011033 18 ICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVAL 97 (495)
Q Consensus 18 ~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~ 97 (495)
+..+..+.+.. ..+.++.. +..+ ++|+.|++++| .+..++. +..+++|++|+|++| .+..++++..
T Consensus 20 l~~l~~l~l~~-~~i~~~~~------~~~L----~~L~~L~l~~n-~i~~l~~-l~~l~~L~~L~Ls~N-~l~~~~~l~~ 85 (605)
T 1m9s_A 20 FAETIKDNLKK-KSVTDAVT------QNEL----NSIDQIIANNS-DIKSVQG-IQYLPNVTKLFLNGN-KLTDIKPLTN 85 (605)
T ss_dssp HHHHHHHHTTC-SCTTSEEC------HHHH----TTCCCCBCTTC-CCCCCTT-GGGCTTCCEEECTTS-CCCCCGGGGG
T ss_pred HHHHHHHhccC-CCcccccc------hhcC----CCCCEEECcCC-CCCCChH-HccCCCCCEEEeeCC-CCCCChhhcc
Confidence 44455555555 44555443 5566 77888888876 4566653 777888888888777 5666666777
Q ss_pred CCCCcEEEEeCCCCCCccccccccCCCCCccEEecccCccccccccccCCCCccEEEeccC
Q 011033 98 PSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGVQLPRSLKRLDILSC 158 (495)
Q Consensus 98 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~ 158 (495)
+++|+.|++++|. +..++ .+..+ ++|+.|++++| .+..++....+++|+.|+++++
T Consensus 86 l~~L~~L~Ls~N~-l~~l~-~l~~l--~~L~~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~N 141 (605)
T 1m9s_A 86 LKNLGWLFLDENK-IKDLS-SLKDL--KKLKSLSLEHN-GISDINGLVHLPQLESLYLGNN 141 (605)
T ss_dssp CTTCCEEECCSSC-CCCCT-TSTTC--TTCCEEECTTS-CCCCCGGGGGCTTCSEEECCSS
T ss_pred CCCCCEEECcCCC-CCCCh-hhccC--CCCCEEEecCC-CCCCCccccCCCccCEEECCCC
Confidence 7788888888776 44444 33333 77777777774 3555555556666777776664
No 99
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.46 E-value=5e-13 Score=117.47 Aligned_cols=150 Identities=17% Similarity=0.164 Sum_probs=88.8
Q ss_pred CCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCccccccccccccCCCCcceeEecc-ccccccCCCCCCccceeE
Q 011033 266 HNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSLEEDGLPTNLHSLH 344 (495)
Q Consensus 266 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~~~~~~L~~L~ 344 (495)
..+++|+.|++++| .+..++ .+..+++|+.|++++| .++.++ .+..+++|++|++++ .+..
T Consensus 41 ~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~-------------- 102 (197)
T 4ezg_A 41 AQMNSLTYITLANI-NVTDLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTS-------------- 102 (197)
T ss_dssp HHHHTCCEEEEESS-CCSCCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBG--------------
T ss_pred hhcCCccEEeccCC-CccChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCc--------------
Confidence 45678888888887 566666 5666778888888887 344443 455566666665555 3332
Q ss_pred eeccCccchhhhcccccCCCCCccceEEeecccccccc-chhhhccccccCCCCCCCceeeecccccccccccccccCCC
Q 011033 345 IWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVS-FPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSSIVDLQN 423 (495)
Q Consensus 345 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~ 423 (495)
..+. .+.++++|++|++++| .+.. .+... ..+++|+.|++++|..++.++ .+..+++
T Consensus 103 ---------~~~~---~l~~l~~L~~L~Ls~n--~i~~~~~~~l-------~~l~~L~~L~L~~n~~i~~~~-~l~~l~~ 160 (197)
T 4ezg_A 103 ---------DKIP---NLSGLTSLTLLDISHS--AHDDSILTKI-------NTLPKVNSIDLSYNGAITDIM-PLKTLPE 160 (197)
T ss_dssp ---------GGSC---CCTTCTTCCEEECCSS--BCBGGGHHHH-------TTCSSCCEEECCSCTBCCCCG-GGGGCSS
T ss_pred ---------ccCh---hhcCCCCCCEEEecCC--ccCcHhHHHH-------hhCCCCCEEEccCCCCccccH-hhcCCCC
Confidence 1111 3455566666666665 3333 12211 234566666666654466666 5666777
Q ss_pred CCeEeccCCCCCCCCCCCCCccccceeeccCCc
Q 011033 424 LTHLNLVDCPKLKYFPEKGLPSSLLQLSIYRCP 456 (495)
Q Consensus 424 L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~ 456 (495)
|++|++++| .++.++....+++|++|++++++
T Consensus 161 L~~L~l~~n-~i~~~~~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 161 LKSLNIQFD-GVHDYRGIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp CCEEECTTB-CCCCCTTGGGCSSCCEEEECBC-
T ss_pred CCEEECCCC-CCcChHHhccCCCCCEEEeeCcc
Confidence 777777774 36665543346677777777664
No 100
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.46 E-value=2.1e-14 Score=139.06 Aligned_cols=226 Identities=16% Similarity=0.111 Sum_probs=142.6
Q ss_pred CCCCccEEEeecCCCchhhh----hhcCCCC-CCcEEeeeCCCCCCcccccCCCC-----CCccEEEeeCCCCccccCC-
Q 011033 219 LPPSLKSLFVWYCPKLESIA----ERLDNNT-SLETINISGCENLKILPSGLHNL-----GQLQEIEIWECENLVSFPE- 287 (495)
Q Consensus 219 ~~~~L~~L~l~~~~~~~~~~----~~~~~~~-~L~~L~l~~~~~~~~l~~~~~~l-----~~L~~L~l~~~~~l~~l~~- 287 (495)
.+++|++|++++|......+ ..+..++ +|++|++++|......+..+..+ ++|++|++++| .++....
T Consensus 20 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~ 98 (362)
T 3goz_A 20 IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGN-FLSYKSSD 98 (362)
T ss_dssp SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHH
T ss_pred CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCC-cCChHHHH
Confidence 44669999999887655444 5677788 89999999864333323334332 88999999998 4554332
Q ss_pred ----CCCCC-CCCcEEEecCcccccccc-cc----ccC-CCCcceeEecc-cccc-----ccCC--CCCCccceeEeecc
Q 011033 288 ----GGLPC-AKLSKLRIYGCERLEALP-KG----LHN-LTSLQQLTIGG-ELPS-----LEED--GLPTNLHSLHIWGN 348 (495)
Q Consensus 288 ----~~~~~-~~L~~L~l~~~~~~~~~~-~~----l~~-l~~L~~L~l~~-~l~~-----~~~~--~~~~~L~~L~l~~~ 348 (495)
.+..+ ++|+.|++++|.. +..+ .. +.. .++|++|++++ .+.. ++.. ..+++|++|++++|
T Consensus 99 ~l~~~l~~~~~~L~~L~Ls~N~l-~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n 177 (362)
T 3goz_A 99 ELVKTLAAIPFTITVLDLGWNDF-SSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN 177 (362)
T ss_dssp HHHHHHHTSCTTCCEEECCSSCG-GGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred HHHHHHHhCCCCccEEECcCCcC-CcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCC
Confidence 13333 6899999999874 4332 22 334 36899999988 5542 2111 22348999999998
Q ss_pred CccchhhhcccccCCCC-CccceEEeecccccccc-----chhhhccccccCCCCCCCceeeecccccccccc-----cc
Q 011033 349 MEIWKSMIERGRGFHRF-SSLRHLTIEGCDDDMVS-----FPLEDKRLGTALPLPASLTSLRIVDFPNLERLS-----SS 417 (495)
Q Consensus 349 ~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-----~~ 417 (495)
.............+..+ ++|++|++++| .+.. ++.... ..+++|+.|++++ +.++..+ ..
T Consensus 178 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N--~i~~~~~~~l~~~l~------~~~~~L~~L~Ls~-N~l~~~~~~~l~~~ 248 (362)
T 3goz_A 178 NLASKNCAELAKFLASIPASVTSLDLSAN--LLGLKSYAELAYIFS------SIPNHVVSLNLCL-NCLHGPSLENLKLL 248 (362)
T ss_dssp CGGGSCHHHHHHHHHTSCTTCCEEECTTS--CGGGSCHHHHHHHHH------HSCTTCCEEECCS-SCCCCCCHHHHHHT
T ss_pred CCchhhHHHHHHHHHhCCCCCCEEECCCC--CCChhHHHHHHHHHh------cCCCCceEEECcC-CCCCcHHHHHHHHH
Confidence 74322221111134455 48999999998 4444 333221 1245899999998 4665543 24
Q ss_pred cccCCCCCeEeccCCCCCCCCCC---------CCCccccceeeccCCc
Q 011033 418 IVDLQNLTHLNLVDCPKLKYFPE---------KGLPSSLLQLSIYRCP 456 (495)
Q Consensus 418 ~~~~~~L~~L~l~~c~~l~~l~~---------~~~~~~L~~L~l~~c~ 456 (495)
+..+++|++|++++|. +..+.. ...+++|++|++++|+
T Consensus 249 ~~~l~~L~~L~L~~n~-l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 249 KDSLKHLQTVYLDYDI-VKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp TTTTTTCSEEEEEHHH-HTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HhcCCCccEEEeccCC-ccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 5677889999999864 333321 1235788899999886
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.46 E-value=1e-12 Score=133.59 Aligned_cols=181 Identities=21% Similarity=0.251 Sum_probs=95.0
Q ss_pred CccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEec
Q 011033 222 SLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIY 301 (495)
Q Consensus 222 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~ 301 (495)
+++.|++++|... .+|..+ +++|+.|++++| .+..+| ..+++|++|++++| .++.+|. +.. +|+.|+++
T Consensus 60 ~L~~L~Ls~n~L~-~lp~~l--~~~L~~L~Ls~N-~l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLS-SLPDNL--PPQITVLEITQN-ALISLP---ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCS-CCCSCC--CTTCSEEECCSS-CCSCCC---CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCC-ccCHhH--cCCCCEEECcCC-CCcccc---cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECC
Confidence 5666777655433 344433 256666776664 344555 33566666666666 4455555 322 66666666
Q ss_pred CccccccccccccCCCCcceeEecc-ccccccCCCCCCccceeEeeccCccchhhhcccccCCCCCccceEEeecccccc
Q 011033 302 GCERLEALPKGLHNLTSLQQLTIGG-ELPSLEEDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDM 380 (495)
Q Consensus 302 ~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 380 (495)
+|. ++.+|. .+++|+.|++++ .+..+|. .+++|++|++++|.. .. ++. +. ++|+.|++++| .+
T Consensus 129 ~N~-l~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~L-~~-lp~----l~--~~L~~L~Ls~N--~L 192 (571)
T 3cvr_A 129 NNQ-LTMLPE---LPALLEYINADNNQLTMLPE--LPTSLEVLSVRNNQL-TF-LPE----LP--ESLEALDVSTN--LL 192 (571)
T ss_dssp SSC-CSCCCC---CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCC-SC-CCC----CC--TTCCEEECCSS--CC
T ss_pred CCc-CCCCCC---cCccccEEeCCCCccCcCCC--cCCCcCEEECCCCCC-CC-cch----hh--CCCCEEECcCC--CC
Confidence 664 444554 456666666666 5555544 455666666666652 21 111 11 56666666665 45
Q ss_pred ccchhhhccccccCCCCCCCceeeecccccccccccccccCCCCCeEeccCCC
Q 011033 381 VSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSSIVDLQNLTHLNLVDCP 433 (495)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~ 433 (495)
..++. ... .-...++.|+.|++++ +.++.+|..+..+++|+.|++++|+
T Consensus 193 ~~lp~-~~~--~L~~~~~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 193 ESLPA-VPV--RNHHSEETEIFFRCRE-NRITHIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp SSCCC-CC----------CCEEEECCS-SCCCCCCGGGGGSCTTEEEECCSSS
T ss_pred Cchhh-HHH--hhhcccccceEEecCC-CcceecCHHHhcCCCCCEEEeeCCc
Confidence 54444 200 0000011126666666 4555666555556666666666643
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.44 E-value=4.7e-13 Score=137.53 Aligned_cols=175 Identities=17% Similarity=0.193 Sum_probs=138.6
Q ss_pred cCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCccccccccccccCCCCcc
Q 011033 241 LDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQ 320 (495)
Q Consensus 241 ~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 320 (495)
+..+++|+.|++++| .+..++ .+..+++|+.|++++| .+..++. +..+++|+.|++++|. +..+| .+..+++|+
T Consensus 39 ~~~L~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLKDLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTTC-CCCCCT-TGGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSSC-CCCCT-TSTTCTTCC
T ss_pred hhcCCCCCEEECcCC-CCCCCh-HHccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCCC-CCCCh-hhccCCCCC
Confidence 345678999999885 466665 5788999999999998 5666655 6778899999999985 56665 688999999
Q ss_pred eeEecc-ccccccCCCCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccCCCCCC
Q 011033 321 QLTIGG-ELPSLEEDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPAS 399 (495)
Q Consensus 321 ~L~l~~-~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (495)
.|++++ .+..++....+++|+.|++++|.. ... . .+..+++|+.|++++| .+..++.- ..+++
T Consensus 113 ~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l-~~l--~---~l~~l~~L~~L~Ls~N--~l~~~~~l--------~~l~~ 176 (605)
T 1m9s_A 113 SLSLEHNGISDINGLVHLPQLESLYLGNNKI-TDI--T---VLSRLTKLDTLSLEDN--QISDIVPL--------AGLTK 176 (605)
T ss_dssp EEECTTSCCCCCGGGGGCTTCSEEECCSSCC-CCC--G---GGGSCTTCSEEECCSS--CCCCCGGG--------TTCTT
T ss_pred EEEecCCCCCCCccccCCCccCEEECCCCcc-CCc--h---hhcccCCCCEEECcCC--cCCCchhh--------ccCCC
Confidence 999999 887777677789999999999973 322 2 4788999999999998 66666552 25679
Q ss_pred CceeeecccccccccccccccCCCCCeEeccCCCCCCCCCC
Q 011033 400 LTSLRIVDFPNLERLSSSIVDLQNLTHLNLVDCPKLKYFPE 440 (495)
Q Consensus 400 L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~ 440 (495)
|+.|+|++ +.++.++ .+..+++|+.|++++|+ +...|.
T Consensus 177 L~~L~Ls~-N~i~~l~-~l~~l~~L~~L~L~~N~-l~~~p~ 214 (605)
T 1m9s_A 177 LQNLYLSK-NHISDLR-ALAGLKNLDVLELFSQE-CLNKPI 214 (605)
T ss_dssp CCEEECCS-SCCCBCG-GGTTCTTCSEEECCSEE-EECCCC
T ss_pred CCEEECcC-CCCCCCh-HHccCCCCCEEEccCCc-CcCCcc
Confidence 99999999 5778876 68889999999999965 544443
No 103
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.42 E-value=2.1e-14 Score=139.11 Aligned_cols=242 Identities=16% Similarity=0.065 Sum_probs=153.0
Q ss_pred ccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCC-----CCCcEEeeeCCCCC
Q 011033 184 SSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNN-----TSLETINISGCENL 258 (495)
Q Consensus 184 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~ 258 (495)
.++++.|+++++ .++... +..+.. ....++.+|++|++++|......+..+..+ ++|++|++++|...
T Consensus 21 ~~~L~~L~Ls~n-~l~~~~-----~~~l~~-~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 93 (362)
T 3goz_A 21 PHGVTSLDLSLN-NLYSIS-----TVELIQ-AFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLS 93 (362)
T ss_dssp CTTCCEEECTTS-CGGGSC-----HHHHHH-HHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred CCCceEEEccCC-CCChHH-----HHHHHH-HHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCC
Confidence 345999999985 355440 000000 112332389999999997766555544443 99999999997533
Q ss_pred Ccccc----cCCCC-CCccEEEeeCCCCccccCC-----CCCC-CCCCcEEEecCccccc----cccccccCCC-Cccee
Q 011033 259 KILPS----GLHNL-GQLQEIEIWECENLVSFPE-----GGLP-CAKLSKLRIYGCERLE----ALPKGLHNLT-SLQQL 322 (495)
Q Consensus 259 ~~l~~----~~~~l-~~L~~L~l~~~~~l~~l~~-----~~~~-~~~L~~L~l~~~~~~~----~~~~~l~~l~-~L~~L 322 (495)
...+. .+..+ ++|++|++++| .++..+. .+.. +++|++|++++|..-. .++..+..++ +|++|
T Consensus 94 ~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L 172 (362)
T 3goz_A 94 YKSSDELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSL 172 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEE
T ss_pred hHHHHHHHHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEe
Confidence 32222 24445 89999999999 4555442 1222 3599999999986442 3444555665 99999
Q ss_pred Eecc-ccccccCC------CCC-CccceeEeeccCccchhhhcccccCCC-CCccceEEeeccccccccchhhhcccccc
Q 011033 323 TIGG-ELPSLEED------GLP-TNLHSLHIWGNMEIWKSMIERGRGFHR-FSSLRHLTIEGCDDDMVSFPLEDKRLGTA 393 (495)
Q Consensus 323 ~l~~-~l~~~~~~------~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 393 (495)
++++ .+...... ... ++|++|++++|..-..........+.. .++|++|++++| .+....... +...
T Consensus 173 ~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N--~l~~~~~~~--l~~~ 248 (362)
T 3goz_A 173 NLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLN--CLHGPSLEN--LKLL 248 (362)
T ss_dssp ECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSS--CCCCCCHHH--HHHT
T ss_pred eecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCC--CCCcHHHHH--HHHH
Confidence 9999 66544321 123 599999999998433211110113444 459999999998 555433211 1112
Q ss_pred CCCCCCCceeeecccc-------cccccccccccCCCCCeEeccCCCCCCCC
Q 011033 394 LPLPASLTSLRIVDFP-------NLERLSSSIVDLQNLTHLNLVDCPKLKYF 438 (495)
Q Consensus 394 ~~~~~~L~~L~l~~~~-------~l~~l~~~~~~~~~L~~L~l~~c~~l~~l 438 (495)
+...++|+.|++++|. .+..++..+..+++|++|++++|+ +...
T Consensus 249 ~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~-l~~~ 299 (362)
T 3goz_A 249 KDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE-IHPS 299 (362)
T ss_dssp TTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB-CCGG
T ss_pred HhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc-CCCc
Confidence 2356789999999964 134455577889999999999965 5443
No 104
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.41 E-value=9.8e-13 Score=115.62 Aligned_cols=146 Identities=12% Similarity=0.090 Sum_probs=105.9
Q ss_pred CCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEe
Q 011033 221 PSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRI 300 (495)
Q Consensus 221 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l 300 (495)
++|++|++++|... .++ .+..+++|++|++++| .+..+ ..+..+++|++|++++|..-...+..+..+++|+.|++
T Consensus 44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n-~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNI-HATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESC-CCSCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCC-CCCcc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 56777888766544 444 4677788888888886 44444 35777888888888887433345666777788888888
Q ss_pred cCccccccccccccCCCCcceeEecc-c-cccccCCCCCCccceeEeeccCccchhhhcccccCCCCCccceEEeecc
Q 011033 301 YGCERLEALPKGLHNLTSLQQLTIGG-E-LPSLEEDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGC 376 (495)
Q Consensus 301 ~~~~~~~~~~~~l~~l~~L~~L~l~~-~-l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 376 (495)
++|......+..+..+++|++|++++ . +..++....+++|++|++++|.... .. .+..+++|++|++++|
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~-~~-----~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHD-YR-----GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCC-CT-----TGGGCSSCCEEEECBC
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcC-hH-----HhccCCCCCEEEeeCc
Confidence 88865555666778888888888888 5 7777766677888888888887322 11 4677888999999887
No 105
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.40 E-value=9.8e-13 Score=121.12 Aligned_cols=99 Identities=14% Similarity=0.259 Sum_probs=54.1
Q ss_pred ccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCCCC
Q 011033 17 DICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVA 96 (495)
Q Consensus 17 ~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~ 96 (495)
.+.++..+++++ +.+++++. +..+ ++|++|++++| .+..++ .+..+++|++|++++| .++.++.+.
T Consensus 17 ~l~~l~~l~l~~-~~i~~~~~------~~~l----~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~l~ 82 (263)
T 1xeu_A 17 GLANAVKQNLGK-QSVTDLVS------QKEL----SGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHN-QISDLSPLK 82 (263)
T ss_dssp HHHHHHHHHHTC-SCTTSEEC------HHHH----TTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGGGT
T ss_pred HHHHHHHHHhcC-CCcccccc------hhhc----CcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCC-ccCCChhhc
Confidence 345555556666 45555542 5555 66666666665 445555 3566666666666665 455555455
Q ss_pred CCCCCcEEEEeCCCCCCccccccccCCCCCccEEeccc
Q 011033 97 LPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEH 134 (495)
Q Consensus 97 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 134 (495)
.+++|++|++++|. +..++.... ++|+.|++++
T Consensus 83 ~l~~L~~L~L~~N~-l~~l~~~~~----~~L~~L~L~~ 115 (263)
T 1xeu_A 83 DLTKLEELSVNRNR-LKNLNGIPS----ACLSRLFLDN 115 (263)
T ss_dssp TCSSCCEEECCSSC-CSCCTTCCC----SSCCEEECCS
T ss_pred cCCCCCEEECCCCc-cCCcCcccc----CcccEEEccC
Confidence 56666666666655 333333211 4455555554
No 106
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.39 E-value=2.8e-13 Score=124.77 Aligned_cols=102 Identities=20% Similarity=0.247 Sum_probs=47.9
Q ss_pred cCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCccccccccccccCCCCcc
Q 011033 241 LDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQ 320 (495)
Q Consensus 241 ~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 320 (495)
+..+++|+.|++++| .+..++ .+..+++|+.|++++| .++.++. +..+++|+.|++++|. ++.+|. +.. ++|+
T Consensus 37 ~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~~N~-l~~l~~-~~~-~~L~ 109 (263)
T 1xeu_A 37 QKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVNRNR-LKNLNG-IPS-ACLS 109 (263)
T ss_dssp HHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCSSC-CSCCTT-CCC-SSCC
T ss_pred hhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECCCCc-cCCcCc-ccc-Cccc
Confidence 344555666666553 344443 3455555666666555 3444443 4445555555555553 333332 111 4455
Q ss_pred eeEecc-ccccccCCCCCCccceeEeeccC
Q 011033 321 QLTIGG-ELPSLEEDGLPTNLHSLHIWGNM 349 (495)
Q Consensus 321 ~L~l~~-~l~~~~~~~~~~~L~~L~l~~~~ 349 (495)
+|++++ .+..++....+++|++|++++|.
T Consensus 110 ~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~ 139 (263)
T 1xeu_A 110 RLFLDNNELRDTDSLIHLKNLEILSIRNNK 139 (263)
T ss_dssp EEECCSSCCSBSGGGTTCTTCCEEECTTSC
T ss_pred EEEccCCccCCChhhcCcccccEEECCCCc
Confidence 555544 44433333334444444444443
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.36 E-value=1.2e-11 Score=111.46 Aligned_cols=61 Identities=23% Similarity=0.295 Sum_probs=30.9
Q ss_pred CCCCCccceEEeeccccccccchhhhccccccCCCCCCCceeeeccccccccccc-ccccCCCCCeEeccCC
Q 011033 362 FHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSS-SIVDLQNLTHLNLVDC 432 (495)
Q Consensus 362 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c 432 (495)
+..+++|+.|++++| .+..++... ..+++|+.|++++ +.++.++. .+..+++|++|++++|
T Consensus 108 ~~~l~~L~~L~Ls~N--~l~~lp~~~-------~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 108 FDRLVHLKELFMCCN--KLTELPRGI-------ERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp TTTCTTCCEEECCSS--CCCSCCTTG-------GGCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred hCcchhhCeEeccCC--cccccCccc-------ccCCCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCC
Confidence 455556666666665 444444332 1334555555555 34444443 3445555555555554
No 108
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.35 E-value=1.1e-11 Score=109.98 Aligned_cols=104 Identities=23% Similarity=0.252 Sum_probs=51.6
Q ss_pred CCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCccc-ccCCCCCCccEEEeeCCCCccccCC-CCCCCCCCcE
Q 011033 220 PPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILP-SGLHNLGQLQEIEIWECENLVSFPE-GGLPCAKLSK 297 (495)
Q Consensus 220 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~ 297 (495)
++++++|++++|......+..+..+++|++|++++| .+..++ ..+..+++|++|++++| .++.++. .+..+++|+.
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~ 104 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPNGVFDKLTQLKE 104 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCC-cCCccCHhHhcCccCCCE
Confidence 355666666655544333334555666666666653 233333 23455566666666655 3444433 2344555666
Q ss_pred EEecCccccccccc-cccCCCCcceeEecc
Q 011033 298 LRIYGCERLEALPK-GLHNLTSLQQLTIGG 326 (495)
Q Consensus 298 L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~ 326 (495)
|++++|. ++.++. .+..+++|++|++++
T Consensus 105 L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~ 133 (208)
T 2o6s_A 105 LALNTNQ-LQSLPDGVFDKLTQLKDLRLYQ 133 (208)
T ss_dssp EECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred EEcCCCc-CcccCHhHhccCCcCCEEECCC
Confidence 6665553 233322 234444444444444
No 109
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.35 E-value=7.6e-12 Score=110.92 Aligned_cols=158 Identities=20% Similarity=0.201 Sum_probs=121.0
Q ss_pred CCCCcEEeeeCCCCCCccc-ccCCCCCCccEEEeeCCCCccccCC-CCCCCCCCcEEEecCccccccccc-cccCCCCcc
Q 011033 244 NTSLETINISGCENLKILP-SGLHNLGQLQEIEIWECENLVSFPE-GGLPCAKLSKLRIYGCERLEALPK-GLHNLTSLQ 320 (495)
Q Consensus 244 ~~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~-~l~~l~~L~ 320 (495)
.++|+.|+++++. +..++ ..+..+++|++|++++| .++.++. .+..+++|+.|++++|. ++.++. .+..+++|+
T Consensus 27 ~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~ 103 (208)
T 2o6s_A 27 PAQTTYLDLETNS-LKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQLK 103 (208)
T ss_dssp CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCC
T ss_pred CCCCcEEEcCCCc-cCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCc-CCccCHhHhcCccCCC
Confidence 4689999999964 55554 45788999999999998 6666665 45678999999999986 445544 578999999
Q ss_pred eeEecc-ccccccCC--CCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccCCCC
Q 011033 321 QLTIGG-ELPSLEED--GLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLP 397 (495)
Q Consensus 321 ~L~l~~-~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 397 (495)
+|++++ .+..++.. ..+++|++|++++|. +...... .+.++++|++|++++| .+. + .+
T Consensus 104 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~---~~~~l~~L~~L~l~~N--~~~-----~--------~~ 164 (208)
T 2o6s_A 104 ELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDG---VFDRLTSLQYIWLHDN--PWD-----C--------TC 164 (208)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTT---TTTTCTTCCEEECCSC--CBC-----C--------CT
T ss_pred EEEcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHH---HhccCCCccEEEecCC--Cee-----c--------CC
Confidence 999999 88877764 557899999999997 3333322 5788999999999998 322 1 34
Q ss_pred CCCceeeecccccccccccccccCCC
Q 011033 398 ASLTSLRIVDFPNLERLSSSIVDLQN 423 (495)
Q Consensus 398 ~~L~~L~l~~~~~l~~l~~~~~~~~~ 423 (495)
++|+.|+++.+..-..+|..++.++.
T Consensus 165 ~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 165 PGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp TTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred CCHHHHHHHHHhCCceeeccCccccC
Confidence 68999999986656678876665554
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.34 E-value=1.4e-11 Score=110.04 Aligned_cols=130 Identities=13% Similarity=0.166 Sum_probs=94.4
Q ss_pred CCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCC-CCCCCCCCcE
Q 011033 219 LPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPE-GGLPCAKLSK 297 (495)
Q Consensus 219 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~ 297 (495)
++++++.|++++|......+..+..+++|+.|++++|......+..+.++++|++|++++| .++.++. .+..+++|+.
T Consensus 30 l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~ 108 (220)
T 2v9t_B 30 LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-KITELPKSLFEGLFSLQL 108 (220)
T ss_dssp CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-cCCccCHhHccCCCCCCE
Confidence 4478899999887766655557888889999999886543333677888899999999888 6667765 4566788999
Q ss_pred EEecCccccccccccccCCCCcceeEecc-ccccccCC--CCCCccceeEeeccC
Q 011033 298 LRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSLEED--GLPTNLHSLHIWGNM 349 (495)
Q Consensus 298 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~--~~~~~L~~L~l~~~~ 349 (495)
|++++|......|..+..+++|++|++++ .+..++.. ..+++|++|++++|.
T Consensus 109 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 109 LLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 99988865444456777888888888887 66666543 334566666666665
No 111
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.33 E-value=8.1e-12 Score=120.75 Aligned_cols=152 Identities=16% Similarity=0.158 Sum_probs=82.3
Q ss_pred cEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCccc-ccCC-CCCCccEEEeeCCCCccccCC-CCCCCCCCcEEEe
Q 011033 224 KSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILP-SGLH-NLGQLQEIEIWECENLVSFPE-GGLPCAKLSKLRI 300 (495)
Q Consensus 224 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~-~~~~-~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l 300 (495)
+.++.+++ .+..+|..+ .+.++.|++++| .+..++ ..+. ++++|+.|++++| .+..++. .+..+++|+.|++
T Consensus 21 ~~l~c~~~-~l~~iP~~~--~~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 21 NILSCSKQ-QLPNVPQSL--PSYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp TEEECCSS-CCSSCCSSC--CTTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEEC
T ss_pred CEEEeCCC-CcCccCccC--CCCCCEEECCCC-CCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEEC
Confidence 45666533 344455433 245777777774 344443 3344 6777777777776 5555553 5666777777777
Q ss_pred cCcccccccc-ccccCCCCcceeEecc-ccccccCC--CCCCccceeEeeccCccchhhhcccccCCCCCccceEEeecc
Q 011033 301 YGCERLEALP-KGLHNLTSLQQLTIGG-ELPSLEED--GLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGC 376 (495)
Q Consensus 301 ~~~~~~~~~~-~~l~~l~~L~~L~l~~-~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 376 (495)
++|. ++.++ ..+..+++|++|++++ .+..+++. ..+++|++|++++|.. ..........+..+++|+.|++++|
T Consensus 96 s~N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l-~~l~~~~~~~~~~l~~L~~L~L~~N 173 (361)
T 2xot_A 96 SSNH-LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI-SRFPVELIKDGNKLPKLMLLDLSSN 173 (361)
T ss_dssp CSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-CSCCGGGTC----CTTCCEEECCSS
T ss_pred CCCc-CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcC-CeeCHHHhcCcccCCcCCEEECCCC
Confidence 7775 34443 3566677777777766 55554332 3345666666666552 2111110001134556666666665
Q ss_pred ccccccch
Q 011033 377 DDDMVSFP 384 (495)
Q Consensus 377 ~~~~~~~~ 384 (495)
.+..++
T Consensus 174 --~l~~l~ 179 (361)
T 2xot_A 174 --KLKKLP 179 (361)
T ss_dssp --CCCCCC
T ss_pred --CCCccC
Confidence 444444
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.30 E-value=3.6e-11 Score=108.21 Aligned_cols=129 Identities=21% Similarity=0.309 Sum_probs=96.7
Q ss_pred CCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCccc-ccCCCCCCccEEEeeCCCCccccCC-CCCCCCCC
Q 011033 218 NLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILP-SGLHNLGQLQEIEIWECENLVSFPE-GGLPCAKL 295 (495)
Q Consensus 218 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L 295 (495)
.++++|+.|++++|......+..+..+++|+.|++++|. +..++ ..+..+++|+.|++++| .++.++. .+..+++|
T Consensus 37 ~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L 114 (229)
T 3e6j_A 37 GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVFDRLVHL 114 (229)
T ss_dssp CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCC-cCCccChhHhCcchhh
Confidence 345789999999888777777788888999999998854 55565 44678889999999888 6666665 45678889
Q ss_pred cEEEecCccccccccccccCCCCcceeEecc-ccccccCC--CCCCccceeEeeccC
Q 011033 296 SKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSLEED--GLPTNLHSLHIWGNM 349 (495)
Q Consensus 296 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~--~~~~~L~~L~l~~~~ 349 (495)
+.|++++|. ++.+|..+..+++|++|++++ .+..++.. ..+++|+.|++++|.
T Consensus 115 ~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 115 KELFMCCNK-LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CEEECCSSC-CCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CeEeccCCc-ccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 999998875 567888888888888888887 66666542 335566666666665
No 113
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.30 E-value=4.3e-11 Score=106.97 Aligned_cols=119 Identities=21% Similarity=0.319 Sum_probs=56.7
Q ss_pred EeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCC-CCCCCCCCcEEEecCccccccccccccCCCCcceeEecc-c
Q 011033 250 INISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPE-GGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-E 327 (495)
Q Consensus 250 L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~ 327 (495)
++.++ ..+..+|..+. ++|+.|++++| .++.++. .+..+++|+.|++++|......|..+..+++|++|++++ .
T Consensus 16 v~c~~-~~l~~iP~~l~--~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 16 VDCRG-KGLTEIPTNLP--ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp EECTT-SCCSSCCSSCC--TTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred EEcCC-CCcCcCCCccC--cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 34433 33444444333 45666666665 4444443 445555666666666543333344555666666666655 4
Q ss_pred cccccCC--CCCCccceeEeeccCccchhhhcccccCCCCCccceEEeecc
Q 011033 328 LPSLEED--GLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGC 376 (495)
Q Consensus 328 l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 376 (495)
+..++.. ..+++|++|++++|. +....+. .+.++++|+.|++++|
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~---~~~~l~~L~~L~L~~N 138 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANK-INCLRVD---AFQDLHNLNLLSLYDN 138 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTT---TTTTCTTCCEEECCSS
T ss_pred CCccCHhHccCCCCCCEEECCCCC-CCEeCHH---HcCCCCCCCEEECCCC
Confidence 4444432 223344444444443 1111111 3444555555555554
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.29 E-value=1.4e-11 Score=119.12 Aligned_cols=153 Identities=15% Similarity=0.133 Sum_probs=118.0
Q ss_pred CCCCCccEEEeecCCCchhhhhhcC-CCCCCcEEeeeCCCCCCccc-ccCCCCCCccEEEeeCCCCccccCC-CCCCCCC
Q 011033 218 NLPPSLKSLFVWYCPKLESIAERLD-NNTSLETINISGCENLKILP-SGLHNLGQLQEIEIWECENLVSFPE-GGLPCAK 294 (495)
Q Consensus 218 ~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~ 294 (495)
.+++.++.|++++|......+..+. .+++|+.|++++| .+..++ ..+..+++|+.|++++| .++.++. .+..+++
T Consensus 36 ~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~ 113 (361)
T 2xot_A 36 SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQA 113 (361)
T ss_dssp SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTT
T ss_pred cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCC-cCCcCCHHHhCCCcC
Confidence 3557799999998877666666676 8999999999985 455554 56889999999999998 5666665 5778899
Q ss_pred CcEEEecCccccccccccccCCCCcceeEecc-ccccccCC-----CCCCccceeEeeccCccchhhhcccccCCCCCc-
Q 011033 295 LSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSLEED-----GLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSS- 367 (495)
Q Consensus 295 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~- 367 (495)
|+.|++++|......|..+..+++|++|++++ .+..++.. ..+++|+.|++++|.. ...... .+..++.
T Consensus 114 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l-~~l~~~---~~~~l~~~ 189 (361)
T 2xot_A 114 LEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL-KKLPLT---DLQKLPAW 189 (361)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC-CCCCHH---HHHHSCHH
T ss_pred CCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC-CccCHH---HhhhccHh
Confidence 99999999875544466889999999999999 88777664 3478999999999973 322222 3555665
Q ss_pred -cceEEeecc
Q 011033 368 -LRHLTIEGC 376 (495)
Q Consensus 368 -L~~L~l~~~ 376 (495)
++.|++++|
T Consensus 190 ~l~~l~l~~N 199 (361)
T 2xot_A 190 VKNGLYLHNN 199 (361)
T ss_dssp HHTTEECCSS
T ss_pred hcceEEecCC
Confidence 488999987
No 115
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.26 E-value=3.8e-11 Score=114.49 Aligned_cols=119 Identities=15% Similarity=0.155 Sum_probs=67.2
Q ss_pred CCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCccc-ccCCCCCCccEEEeeCCCCccccCC-CCCCCCCCc-E
Q 011033 221 PSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILP-SGLHNLGQLQEIEIWECENLVSFPE-GGLPCAKLS-K 297 (495)
Q Consensus 221 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~-~ 297 (495)
.+++.+.+.+.-...........+++|+++++.++ .+..++ .+|.++++|+.+++.++ ++.++. .+..|++|+ .
T Consensus 202 ~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~ 278 (329)
T 3sb4_A 202 RDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGT 278 (329)
T ss_dssp GGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEE
T ss_pred cccceEEEeeeecHHHHHHHHHhcCCCeEEECCCC-CcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEE
Confidence 34555555543222222222223567777777663 344454 34666777777777664 555554 556666777 7
Q ss_pred EEecCcccccccc-ccccCCCCcceeEecc-ccccccCC--CCCCccceeE
Q 011033 298 LRIYGCERLEALP-KGLHNLTSLQQLTIGG-ELPSLEED--GLPTNLHSLH 344 (495)
Q Consensus 298 L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~-~l~~~~~~--~~~~~L~~L~ 344 (495)
+++.+ .++.++ ..|.++++|+.+++.. .+..++.. ..+++|+.++
T Consensus 279 l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 279 LELPA--SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEECT--TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EEEcc--cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 77765 355553 3666777777777755 66555543 3355666654
No 116
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.24 E-value=6.7e-11 Score=105.67 Aligned_cols=146 Identities=14% Similarity=0.261 Sum_probs=74.2
Q ss_pred cEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCC--CCCCCCCCcEEEecCcccccccc-ccccCCCCcceeEe
Q 011033 248 ETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPE--GGLPCAKLSKLRIYGCERLEALP-KGLHNLTSLQQLTI 324 (495)
Q Consensus 248 ~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~--~~~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l 324 (495)
+.+++++ +.+..+|..+. +.++.|++++| .++.++. .+..+++|+.|++++|. ++.++ ..+..+++|++|++
T Consensus 14 ~~l~~s~-n~l~~iP~~~~--~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 14 TTVDCSN-QKLNKIPEHIP--QYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILL 88 (220)
T ss_dssp TEEECCS-SCCSSCCSCCC--TTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEEC
T ss_pred CEeEeCC-CCcccCccCCC--CCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEEEC
Confidence 3556655 34455554442 34566666665 4444421 34455666666666654 33332 24555555555555
Q ss_pred cc-ccccccCCCCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccCCCCCCCcee
Q 011033 325 GG-ELPSLEEDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSL 403 (495)
Q Consensus 325 ~~-~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 403 (495)
++ .+..++. ..+.++++|++|++++| .+..++... +..+++|+.|
T Consensus 89 s~N~l~~~~~--------------------------~~~~~l~~L~~L~Ls~N--~l~~~~~~~------~~~l~~L~~L 134 (220)
T 2v70_A 89 TSNRLENVQH--------------------------KMFKGLESLKTLMLRSN--RITCVGNDS------FIGLSSVRLL 134 (220)
T ss_dssp CSSCCCCCCG--------------------------GGGTTCSSCCEEECTTS--CCCCBCTTS------STTCTTCSEE
T ss_pred CCCccCccCH--------------------------hHhcCCcCCCEEECCCC--cCCeECHhH------cCCCccCCEE
Confidence 44 3333322 13455566666666665 444443211 1234556666
Q ss_pred eeccccccccc-ccccccCCCCCeEeccCCC
Q 011033 404 RIVDFPNLERL-SSSIVDLQNLTHLNLVDCP 433 (495)
Q Consensus 404 ~l~~~~~l~~l-~~~~~~~~~L~~L~l~~c~ 433 (495)
++++ +.++.+ |..+..+++|++|++++|+
T Consensus 135 ~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 135 SLYD-NQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp ECTT-SCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred ECCC-CcCCEECHHHhcCCCCCCEEEecCcC
Confidence 6666 445544 3456666666666666644
No 117
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.23 E-value=2.9e-11 Score=103.15 Aligned_cols=129 Identities=16% Similarity=0.145 Sum_probs=55.2
Q ss_pred CCCcEEeeeCCCCC-CcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCccccccccccccCCCCcceeE
Q 011033 245 TSLETINISGCENL-KILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLT 323 (495)
Q Consensus 245 ~~L~~L~l~~~~~~-~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 323 (495)
++|+.|++++|... ..+|..+..+++|+.|++++| .++.+ ..+..+++|+.|++++|.....+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINV-GLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESS-CCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCC-CCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 44555555443321 134444444555555555555 23333 3344445555555555543222443444455555555
Q ss_pred ecc-cccccc---CCCCCCccceeEeeccCccchhhhcccccCCCCCccceEEeecc
Q 011033 324 IGG-ELPSLE---EDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGC 376 (495)
Q Consensus 324 l~~-~l~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 376 (495)
+++ .+..++ ....+++|++|++++|.. ..........+..+++|++|++++|
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l-~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEV-TNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGG-GTSTTHHHHHHTTCSSCCEETTEET
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcC-cchHHHHHHHHHhCccCcEecCCCC
Confidence 544 333332 112233444444444431 1111100013445555555555555
No 118
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.21 E-value=1.1e-10 Score=104.37 Aligned_cols=128 Identities=14% Similarity=0.080 Sum_probs=66.4
Q ss_pred CCCccEEEeecCCCchhhh-hhcCCCCCCcEEeeeCCCCCCcc-cccCCCCCCccEEEeeCCCCccccCC-CCCCCCCCc
Q 011033 220 PPSLKSLFVWYCPKLESIA-ERLDNNTSLETINISGCENLKIL-PSGLHNLGQLQEIEIWECENLVSFPE-GGLPCAKLS 296 (495)
Q Consensus 220 ~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~ 296 (495)
++.++.|++++|......+ ..+..+++|+.|++++|. +..+ +..+.++++|++|++++| .++.++. .+..+++|+
T Consensus 31 ~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~ 108 (220)
T 2v70_A 31 PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTSN-RLENVQHKMFKGLESLK 108 (220)
T ss_dssp CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCCCCCGGGGTTCSSCC
T ss_pred CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEEECCCC-ccCccCHhHhcCCcCCC
Confidence 3456666666655444322 235566666666666643 3333 235666666666666666 3344333 344556666
Q ss_pred EEEecCccccccccccccCCCCcceeEecc-ccccccCC--CCCCccceeEeeccC
Q 011033 297 KLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSLEED--GLPTNLHSLHIWGNM 349 (495)
Q Consensus 297 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~--~~~~~L~~L~l~~~~ 349 (495)
.|++++|......|..+..+++|++|++++ .+..+++. ..+++|++|++++|.
T Consensus 109 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 109 TLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp EEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred EEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 666666653333344555566666666655 44444221 223344444444443
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.21 E-value=4.9e-11 Score=101.77 Aligned_cols=135 Identities=19% Similarity=0.201 Sum_probs=68.9
Q ss_pred CCccEEEeeCCCCcc--ccCCCCCCCCCCcEEEecCccccccccccccCCCCcceeEeccccccccCCCCCCccceeEee
Q 011033 269 GQLQEIEIWECENLV--SFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGGELPSLEEDGLPTNLHSLHIW 346 (495)
Q Consensus 269 ~~L~~L~l~~~~~l~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~l~~~~~~~~~~~L~~L~l~ 346 (495)
++|++|++++| .+. .++..+..+++|+.|++++|. ++.+ ..+..++ +|++|+++
T Consensus 24 ~~L~~L~l~~n-~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~---------------------~L~~L~Ls 79 (168)
T 2ell_A 24 AAVRELVLDNC-KSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLP---------------------KLKKLELS 79 (168)
T ss_dssp TSCSEEECCSC-BCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCS---------------------SCCEEEEE
T ss_pred ccCCEEECCCC-CCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCC---------------------CCCEEECc
Confidence 55566666655 233 444444455555555555554 3333 3344444 44444444
Q ss_pred ccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccCCCCCCCceeeeccccccccccc----ccccCC
Q 011033 347 GNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSS----SIVDLQ 422 (495)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~----~~~~~~ 422 (495)
+|.... ..+. .+.++++|+.|++++| .+..++... .+..+++|+.|++++ +.++.++. .+..++
T Consensus 80 ~N~l~~-~~~~---~~~~l~~L~~L~Ls~N--~l~~~~~~~-----~l~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~l~ 147 (168)
T 2ell_A 80 ENRIFG-GLDM---LAEKLPNLTHLNLSGN--KLKDISTLE-----PLKKLECLKSLDLFN-CEVTNLNDYRESVFKLLP 147 (168)
T ss_dssp SCCCCS-CCCH---HHHHCTTCCEEECBSS--SCCSSGGGG-----GGSSCSCCCEEECCS-SGGGTSTTHHHHHHTTCS
T ss_pred CCcCch-HHHH---HHhhCCCCCEEeccCC--ccCcchhHH-----HHhcCCCCCEEEeeC-CcCcchHHHHHHHHHhCc
Confidence 444211 1111 2344666666666666 455443200 012345666666666 45555554 566677
Q ss_pred CCCeEeccCCCCCCCCCC
Q 011033 423 NLTHLNLVDCPKLKYFPE 440 (495)
Q Consensus 423 ~L~~L~l~~c~~l~~l~~ 440 (495)
+|++|++++|. +..+|.
T Consensus 148 ~L~~L~l~~n~-~~~~~~ 164 (168)
T 2ell_A 148 QLTYLDGYDRE-DQEAPD 164 (168)
T ss_dssp SCCEETTEETT-SCBCCS
T ss_pred cCcEecCCCCC-hhhccc
Confidence 77777777753 555554
No 120
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.21 E-value=9.9e-11 Score=111.58 Aligned_cols=79 Identities=13% Similarity=0.125 Sum_probs=40.2
Q ss_pred CCccceEEeeccccccccchhhhccccccCCCCCCCceeeeccccccccccc-ccccCCCCC-eEeccCCCCCCCCCCCC
Q 011033 365 FSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSS-SIVDLQNLT-HLNLVDCPKLKYFPEKG 442 (495)
Q Consensus 365 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~-~L~l~~c~~l~~l~~~~ 442 (495)
+++|+.|++++| .+..++... |..+++|+.+++.+ + ++.|+. .+.+|++|+ ++++.+ +++.|+...
T Consensus 225 ~~~L~~l~L~~n--~i~~I~~~a------F~~~~~L~~l~l~~-n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~a 292 (329)
T 3sb4_A 225 MPNLVSLDISKT--NATTIPDFT------FAQKKYLLKIKLPH-N-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGA 292 (329)
T ss_dssp CTTCCEEECTTB--CCCEECTTT------TTTCTTCCEEECCT-T-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTT
T ss_pred cCCCeEEECCCC--CcceecHhh------hhCCCCCCEEECCc-c-cceehHHHhhCChhccEEEEEcc--cceEEchhh
Confidence 455555555554 444444422 33445555555555 1 555554 455555555 555555 355555433
Q ss_pred C--ccccceeeccCC
Q 011033 443 L--PSSLLQLSIYRC 455 (495)
Q Consensus 443 ~--~~~L~~L~l~~c 455 (495)
+ +++|+.+++.++
T Consensus 293 F~~c~~L~~l~l~~n 307 (329)
T 3sb4_A 293 FMGCDNLRYVLATGD 307 (329)
T ss_dssp TTTCTTEEEEEECSS
T ss_pred hhCCccCCEEEeCCC
Confidence 3 455555555433
No 121
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.19 E-value=5.1e-11 Score=102.51 Aligned_cols=136 Identities=14% Similarity=0.086 Sum_probs=104.7
Q ss_pred HHhhcCccccccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCC
Q 011033 7 IWKSHNELLQDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKC 86 (495)
Q Consensus 7 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~ 86 (495)
-.+.....+..+++|++|++++ +.++.++. +..+ +++|++|++++| .+..+ ..+..+++|++|++++|
T Consensus 7 ~~i~~~~~~~~~~~L~~L~l~~-n~l~~i~~------~~~~---~~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N 74 (176)
T 1a9n_A 7 ELIEQAAQYTNAVRDRELDLRG-YKIPVIEN------LGAT---LDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNN 74 (176)
T ss_dssp HHHHTSCEEECTTSCEEEECTT-SCCCSCCC------GGGG---TTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSS
T ss_pred HHHHHHHhcCCcCCceEEEeeC-CCCchhHH------hhhc---CCCCCEEECCCC-CCCcc-cccccCCCCCEEECCCC
Confidence 3444556677899999999999 57887744 4443 259999999998 55666 46889999999999998
Q ss_pred CCCCCCCC--CCCCCCCcEEEEeCCCCCCcccc--ccccCCCCCccEEecccCcccccccc-----ccCCCCccEEEecc
Q 011033 87 SSLVSFPE--VALPSKLKIIEIEGCDALKSLPE--AWMCDTNSSLETLYIEHCRTLTYLAG-----VQLPRSLKRLDILS 157 (495)
Q Consensus 87 ~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~l~~~~~-----~~~~~~L~~L~l~~ 157 (495)
.++.+|+ +..+++|++|++++|. +..+|. .+... ++|+.|++++|. ++.++. ...+++|+.|++++
T Consensus 75 -~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l--~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~ 149 (176)
T 1a9n_A 75 -RICRIGEGLDQALPDLTELILTNNS-LVELGDLDPLASL--KSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQK 149 (176)
T ss_dssp -CCCEECSCHHHHCTTCCEEECCSCC-CCCGGGGGGGGGC--TTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEE
T ss_pred -cccccCcchhhcCCCCCEEECCCCc-CCcchhhHhhhcC--CCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCc
Confidence 6777775 4789999999999987 577776 55544 889999999864 555554 35678888888877
Q ss_pred CC
Q 011033 158 CD 159 (495)
Q Consensus 158 ~~ 159 (495)
+.
T Consensus 150 n~ 151 (176)
T 1a9n_A 150 VK 151 (176)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.15 E-value=8.3e-11 Score=98.11 Aligned_cols=58 Identities=21% Similarity=0.246 Sum_probs=27.2
Q ss_pred CCCCccceEEeeccccccccch--hhhccccccCCCCCCCceeeeccccccccccc----ccccCCCCCeEecc
Q 011033 363 HRFSSLRHLTIEGCDDDMVSFP--LEDKRLGTALPLPASLTSLRIVDFPNLERLSS----SIVDLQNLTHLNLV 430 (495)
Q Consensus 363 ~~l~~L~~L~l~~~~~~~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~----~~~~~~~L~~L~l~ 430 (495)
.++++|++|++++| .+..++ ... ..+++|+.|++++ +.++.++. .+..+++|++|+++
T Consensus 85 ~~l~~L~~L~ls~N--~i~~~~~~~~~-------~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 85 EKCPNLTHLNLSGN--KIKDLSTIEPL-------KKLENLKSLDLFN-CEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HHCTTCCEEECTTS--CCCSHHHHGGG-------GGCTTCCEEECTT-CGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred hhCCCCCEEECCCC--cCCChHHHHHH-------hhCCCCCEEeCcC-CcccchHHHHHHHHHHCCCcccccCC
Confidence 34555555555555 344332 111 1234555555555 34444443 34555555555554
No 123
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.14 E-value=2.1e-13 Score=139.24 Aligned_cols=105 Identities=15% Similarity=0.080 Sum_probs=53.5
Q ss_pred cceeEecc-ccccccCCCCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccCCCC
Q 011033 319 LQQLTIGG-ELPSLEEDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLP 397 (495)
Q Consensus 319 L~~L~l~~-~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 397 (495)
|+.|++++ .+..+|..+.+++|+.|++++|.. . .++. .+.++++|+.|++++| .+..+|. . ..+
T Consensus 443 L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l-~-~lp~---~~~~l~~L~~L~Ls~N--~l~~lp~-l-------~~l 507 (567)
T 1dce_A 443 VRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRL-R-ALPP---ALAALRCLEVLQASDN--ALENVDG-V-------ANL 507 (567)
T ss_dssp CSEEECTTSCCSSCCCGGGGTTCCEEECCSSCC-C-CCCG---GGGGCTTCCEEECCSS--CCCCCGG-G-------TTC
T ss_pred ceEEEecCCCCCCCcCccccccCcEeecCcccc-c-ccch---hhhcCCCCCEEECCCC--CCCCCcc-c-------CCC
Confidence 44444444 333333333344444455554442 2 2222 3555666666666665 5555542 2 244
Q ss_pred CCCceeeeccccccccc--ccccccCCCCCeEeccCCCCCCCCCC
Q 011033 398 ASLTSLRIVDFPNLERL--SSSIVDLQNLTHLNLVDCPKLKYFPE 440 (495)
Q Consensus 398 ~~L~~L~l~~~~~l~~l--~~~~~~~~~L~~L~l~~c~~l~~l~~ 440 (495)
++|+.|++++ +.++.+ |..+..+++|++|++++| .++.+|.
T Consensus 508 ~~L~~L~Ls~-N~l~~~~~p~~l~~l~~L~~L~L~~N-~l~~~~~ 550 (567)
T 1dce_A 508 PRLQELLLCN-NRLQQSAAIQPLVSCPRLVLLNLQGN-SLCQEEG 550 (567)
T ss_dssp SSCCEEECCS-SCCCSSSTTGGGGGCTTCCEEECTTS-GGGGSSS
T ss_pred CCCcEEECCC-CCCCCCCCcHHHhcCCCCCEEEecCC-cCCCCcc
Confidence 5666666666 455555 556666666666666663 3555444
No 124
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.13 E-value=6.6e-09 Score=101.32 Aligned_cols=257 Identities=14% Similarity=0.212 Sum_probs=148.4
Q ss_pred ccccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccc-cccCCCCccEEEEeCCCCCCCCC
Q 011033 15 LQDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQ-SSLSLSSLREIEIYKCSSLVSFP 93 (495)
Q Consensus 15 ~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~-~~~~l~~L~~L~l~~~~~l~~l~ 93 (495)
+..+..++.+.+.+ .++.|... +|.+ .+|+.+++..+ +..++. +|..+ +|+.+.+.. .++.++
T Consensus 109 ~~~~~~l~~i~ip~--~i~~I~~~----aF~~-----~~L~~i~l~~~--i~~I~~~aF~~~-~L~~i~lp~--~l~~I~ 172 (401)
T 4fdw_A 109 TEILKGYNEIILPN--SVKSIPKD----AFRN-----SQIAKVVLNEG--LKSIGDMAFFNS-TVQEIVFPS--TLEQLK 172 (401)
T ss_dssp EEECSSCSEEECCT--TCCEECTT----TTTT-----CCCSEEECCTT--CCEECTTTTTTC-CCCEEECCT--TCCEEC
T ss_pred EEecCCccEEEECC--ccCEehHh----hccc-----CCccEEEeCCC--ccEECHHhcCCC-CceEEEeCC--CccEeh
Confidence 44456677777766 46666664 4443 35777777653 455543 35553 577777765 466665
Q ss_pred C--CCCCCCCcEEEEeCCCCCCccccccccCCCCCccEEecccCccccccccc--cCCCCccEEEeccCCCccccccccc
Q 011033 94 E--VALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGV--QLPRSLKRLDILSCDNIRTLTVEEG 169 (495)
Q Consensus 94 ~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~ 169 (495)
. +..|.+|+.+++.++. +..++...+.. .+|+.+.+.. .++.++.. ..+++|+.+.+.. +++.+ ...
T Consensus 173 ~~aF~~c~~L~~l~l~~n~-l~~I~~~aF~~--~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~--~l~~I--~~~ 243 (401)
T 4fdw_A 173 EDIFYYCYNLKKADLSKTK-ITKLPASTFVY--AGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPE--NVSTI--GQE 243 (401)
T ss_dssp SSTTTTCTTCCEEECTTSC-CSEECTTTTTT--CCCSEEECCT--TCCEECTTTTTTCTTCCCEECCT--TCCEE--CTT
T ss_pred HHHhhCcccCCeeecCCCc-ceEechhhEee--cccCEEEeCC--chheehhhHhhCCCCCCEEecCC--CccCc--ccc
Confidence 4 6777788888887755 56666655543 6777777764 25555544 3345566555543 23333 111
Q ss_pred cccCCCCccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcE
Q 011033 170 IQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLET 249 (495)
Q Consensus 170 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 249 (495)
. +.. .+|+.+.+. +.....-..+|..+++|+.
T Consensus 244 a-----------F~~------------------------------------~~L~~i~lp-~~i~~I~~~aF~~c~~L~~ 275 (401)
T 4fdw_A 244 A-----------FRE------------------------------------SGITTVKLP-NGVTNIASRAFYYCPELAE 275 (401)
T ss_dssp T-----------TTT------------------------------------CCCSEEEEE-TTCCEECTTTTTTCTTCCE
T ss_pred c-----------ccc------------------------------------CCccEEEeC-CCccEEChhHhhCCCCCCE
Confidence 1 001 234555553 2222222335667777777
Q ss_pred EeeeCCCCC----Ccc-cccCCCCCCccEEEeeCCCCccccCC-CCCCCCCCcEEEecCcccccccc-ccccCCCCccee
Q 011033 250 INISGCENL----KIL-PSGLHNLGQLQEIEIWECENLVSFPE-GGLPCAKLSKLRIYGCERLEALP-KGLHNLTSLQQL 322 (495)
Q Consensus 250 L~l~~~~~~----~~l-~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L 322 (495)
+.+.++... ..+ ...|.+|++|+.+++.. .++.++. .+..|++|+.+.+..+ ++.++ ..|.++ +|+.+
T Consensus 276 l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l 350 (401)
T 4fdw_A 276 VTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNT-GIKEV 350 (401)
T ss_dssp EEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECTT--CCEECTTSSSSS-CCCEE
T ss_pred EEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCCCC-CCCEE
Confidence 777664221 123 34567777888887763 3566654 5566777888887543 55553 366777 78888
Q ss_pred Eecc-ccccccCC---CCCCccceeEeeccC
Q 011033 323 TIGG-ELPSLEED---GLPTNLHSLHIWGNM 349 (495)
Q Consensus 323 ~l~~-~l~~~~~~---~~~~~L~~L~l~~~~ 349 (495)
.+.+ .+..++.. +.+..++.|++-.+.
T Consensus 351 ~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 351 KVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp EECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred EEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 8877 44444333 233567778777654
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.11 E-value=6.8e-11 Score=98.63 Aligned_cols=80 Identities=15% Similarity=0.150 Sum_probs=39.3
Q ss_pred CCCcEEeeeCCCCC-CcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCccccccccccccCCCCcceeE
Q 011033 245 TSLETINISGCENL-KILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLT 323 (495)
Q Consensus 245 ~~L~~L~l~~~~~~-~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 323 (495)
++|+.|++++|... ..+|..+..+++|+.|++++| .++.+ ..+..+++|+.|++++|.....+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45555555554322 244444555556666666555 33333 3344455566666655543332444444445555554
Q ss_pred ecc
Q 011033 324 IGG 326 (495)
Q Consensus 324 l~~ 326 (495)
+++
T Consensus 95 ls~ 97 (149)
T 2je0_A 95 LSG 97 (149)
T ss_dssp CTT
T ss_pred CCC
Confidence 444
No 126
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.10 E-value=8.5e-09 Score=100.77 Aligned_cols=53 Identities=15% Similarity=0.044 Sum_probs=28.8
Q ss_pred cccceeecccccCCcccc-ccccCCCCccEEEEeCCCCCCCCCC--CCCCCCCcEEEEeC
Q 011033 52 CRLEYLRLSYCEGLVKLP-QSSLSLSSLREIEIYKCSSLVSFPE--VALPSKLKIIEIEG 108 (495)
Q Consensus 52 ~~L~~L~ls~~~~l~~l~-~~~~~l~~L~~L~l~~~~~l~~l~~--~~~~~~L~~L~l~~ 108 (495)
.+|+.+.+.. .+..++ .+|.+|++|+.+++.. .++.++. +..+.+|+.+.+..
T Consensus 71 ~~L~~i~lp~--~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~c~~L~~i~~p~ 126 (394)
T 4fs7_A 71 RKVTEIKIPS--TVREIGEFAFENCSKLEIINIPD--SVKMIGRCTFSGCYALKSILLPL 126 (394)
T ss_dssp TTEEEEECCT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCCCCCCT
T ss_pred CCceEEEeCC--CccCcchhHhhCCCCCcEEEeCC--CceEccchhhcccccchhhcccC
Confidence 6666666653 234443 2456666666666654 2444443 55566666555443
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.03 E-value=1.7e-09 Score=94.34 Aligned_cols=119 Identities=13% Similarity=0.118 Sum_probs=87.1
Q ss_pred cEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCC--CCCCC
Q 011033 22 RRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE--VALPS 99 (495)
Q Consensus 22 ~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~--~~~~~ 99 (495)
+.+++++ +.++.+|.+ + +++|++|++++| .+..+|..+..+++|++|++++| .++.++. +..++
T Consensus 13 ~~l~~~~-~~l~~ip~~-----~------~~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~ 78 (193)
T 2wfh_A 13 TVVRCSN-KGLKVLPKG-----I------PRDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMT 78 (193)
T ss_dssp TEEECTT-SCCSSCCSC-----C------CTTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCT
T ss_pred CEEEcCC-CCCCcCCCC-----C------CCCCCEEECCCC-cCchhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCC
Confidence 6778887 677877764 2 267888888887 55778777888888888888887 6666664 77888
Q ss_pred CCcEEEEeCCCCCCcccc-ccccCCCCCccEEecccCccccccccc--cCCCCccEEEeccC
Q 011033 100 KLKIIEIEGCDALKSLPE-AWMCDTNSSLETLYIEHCRTLTYLAGV--QLPRSLKRLDILSC 158 (495)
Q Consensus 100 ~L~~L~l~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~ 158 (495)
+|++|++++|. +..++. .+... ++|+.|++++| .++.++.. ..+++|+.|+++++
T Consensus 79 ~L~~L~Ls~N~-l~~i~~~~f~~l--~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 79 QLLTLILSYNR-LRCIPPRTFDGL--KSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp TCCEEECCSSC-CCBCCTTTTTTC--TTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSS
T ss_pred CCCEEECCCCc-cCEeCHHHhCCC--CCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCC
Confidence 88888888887 444544 44444 78888888884 56666653 45678888888774
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.02 E-value=3.7e-10 Score=97.05 Aligned_cols=56 Identities=20% Similarity=0.237 Sum_probs=26.1
Q ss_pred CCceeeeccccccccccc--ccccCCCCCeEeccCCCCCCCCCCC-----CCccccceeeccCCc
Q 011033 399 SLTSLRIVDFPNLERLSS--SIVDLQNLTHLNLVDCPKLKYFPEK-----GLPSSLLQLSIYRCP 456 (495)
Q Consensus 399 ~L~~L~l~~~~~l~~l~~--~~~~~~~L~~L~l~~c~~l~~l~~~-----~~~~~L~~L~l~~c~ 456 (495)
+|+.|++++ +.++.+|. .+..+++|++|++++|+ +..+|.. ..+++|++|++++|+
T Consensus 89 ~L~~L~L~~-N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 89 DLTELILTN-NSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp TCCEEECCS-CCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCCEEECCC-CcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 444444444 33444443 34455555555555532 4444431 124555555555554
No 129
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.00 E-value=6.3e-08 Score=94.54 Aligned_cols=190 Identities=16% Similarity=0.148 Sum_probs=109.3
Q ss_pred hcCCCCCCcEEeeeCCCCCCcc-cccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCcccccccc-ccccCCC
Q 011033 240 RLDNNTSLETINISGCENLKIL-PSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALP-KGLHNLT 317 (495)
Q Consensus 240 ~~~~~~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~l~ 317 (495)
.|..+.+|+.+.+..+ +..+ ..++.++..|+.+.+..+ ...+......+.+|+.+.+... .+.+. ..+..+.
T Consensus 180 ~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~--~~~i~~~~~~~~~l~~i~ip~~--~~~i~~~~f~~~~ 253 (394)
T 4fs7_A 180 LFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNS--LYYLGDFALSKTGVKNIIIPDS--FTELGKSVFYGCT 253 (394)
T ss_dssp TTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCCCCEEEECTT--CCEECSSTTTTCS
T ss_pred cccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCC--ceEeehhhcccCCCceEEECCC--ceecccccccccc
Confidence 4556666776666542 3333 234556666666666543 2333444444556777766542 23332 2455667
Q ss_pred CcceeEeccccccccCC--CCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccCC
Q 011033 318 SLQQLTIGGELPSLEED--GLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALP 395 (495)
Q Consensus 318 ~L~~L~l~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 395 (495)
+++.+.+...+..+... ..++.++.+...... +.. ..+..+.+|+.+.+..+ +..+... +|.
T Consensus 254 ~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~-----i~~--~~F~~~~~L~~i~l~~~---i~~I~~~------aF~ 317 (394)
T 4fs7_A 254 DLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVI-----VPE--KTFYGCSSLTEVKLLDS---VKFIGEE------AFE 317 (394)
T ss_dssp SCCEEEECCTTCEECSCTTTTCTTCCEEEECSSE-----ECT--TTTTTCTTCCEEEECTT---CCEECTT------TTT
T ss_pred cceeEEcCCCcceeeccccccccccceeccCcee-----ecc--ccccccccccccccccc---cceechh------hhc
Confidence 77777766533222222 234555555544432 111 35667788888888663 4444442 234
Q ss_pred CCCCCceeeeccccccccccc-ccccCCCCCeEeccCCCCCCCCCCCCC--ccccceeeccCC
Q 011033 396 LPASLTSLRIVDFPNLERLSS-SIVDLQNLTHLNLVDCPKLKYFPEKGL--PSSLLQLSIYRC 455 (495)
Q Consensus 396 ~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c 455 (495)
..++|+.+++.+ .++.|+. .+.+|.+|+.+.+.. +++.|+...+ +++|+.+++...
T Consensus 318 ~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 318 SCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEEGG
T ss_pred CCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEECCC
Confidence 556788888754 4777765 778888888888865 2777776544 678888877543
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.99 E-value=1e-10 Score=123.17 Aligned_cols=109 Identities=17% Similarity=0.184 Sum_probs=56.1
Q ss_pred hhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCccccccccccccCCC
Q 011033 238 AERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLT 317 (495)
Q Consensus 238 ~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~ 317 (495)
+..+..+++|+.|++++|. +..++..+..+++|++|++++| .++.+|..+..+++|+.|+|++|. ++.+|..+..++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~ 293 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCF 293 (727)
T ss_dssp -----CCCCCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGT
T ss_pred hhhhccCCCCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCC
Confidence 3345555556666665533 3345544555556666666555 344555545555556666665554 335555555555
Q ss_pred CcceeEecc-ccccccCC-CCCCccceeEeeccC
Q 011033 318 SLQQLTIGG-ELPSLEED-GLPTNLHSLHIWGNM 349 (495)
Q Consensus 318 ~L~~L~l~~-~l~~~~~~-~~~~~L~~L~l~~~~ 349 (495)
+|++|+|++ .+..+|.. +.+++|+.|++++|.
T Consensus 294 ~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 294 QLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp TCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSC
T ss_pred CCCEEECCCCCCCccChhhhcCCCccEEeCCCCc
Confidence 566665555 44454442 344555555555554
No 131
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.99 E-value=1.4e-09 Score=110.91 Aligned_cols=140 Identities=15% Similarity=0.125 Sum_probs=83.5
Q ss_pred ccccccccccEEe-cccccccccccchhhH-HHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCC
Q 011033 13 ELLQDICSLRRLT-ITSCPKLQSLVAEEEK-DQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLV 90 (495)
Q Consensus 13 ~~~~~~~~L~~L~-l~~c~~l~~i~~~~~~-~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~ 90 (495)
+.++.+++|+.|+ ++. +.+..++.-.+. ..+..+ .+..|+.|++++| .+..+|. ++.+++|++|++++| .++
T Consensus 403 ~~l~~l~~L~~L~~l~~-n~~~~L~~l~l~~n~i~~l--~~~~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N-~l~ 476 (567)
T 1dce_A 403 ETLQYFSTLKAVDPMRA-AYLDDLRSKFLLENSVLKM--EYADVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHN-RLR 476 (567)
T ss_dssp HHHHHHHHHHHHCGGGH-HHHHHHHHHHHHHHHHHHH--HHTTCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSS-CCC
T ss_pred HHHHHHHhcccCcchhh-cccchhhhhhhhccccccc--CccCceEEEecCC-CCCCCcC-ccccccCcEeecCcc-ccc
Confidence 4456677777776 333 444433221000 012222 1135777777776 5566776 777777777777776 566
Q ss_pred CCCC-CCCCCCCcEEEEeCCCCCCccccccccCCCCCccEEecccCcccccc--ccc-cCCCCccEEEeccCCCcccc
Q 011033 91 SFPE-VALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYL--AGV-QLPRSLKRLDILSCDNIRTL 164 (495)
Q Consensus 91 ~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~--~~~-~~~~~L~~L~l~~~~~l~~~ 164 (495)
.+|. ++.+++|+.|++++|. +..+| .+..+ ++|+.|++++| .++.+ |.. ..+++|+.|+++++ .++..
T Consensus 477 ~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~l~~l--~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N-~l~~~ 548 (567)
T 1dce_A 477 ALPPALAALRCLEVLQASDNA-LENVD-GVANL--PRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGN-SLCQE 548 (567)
T ss_dssp CCCGGGGGCTTCCEEECCSSC-CCCCG-GGTTC--SSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTS-GGGGS
T ss_pred ccchhhhcCCCCCEEECCCCC-CCCCc-ccCCC--CCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCC-cCCCC
Confidence 6665 7777777777777776 44566 45444 77777777774 45554 333 56777777777774 44433
No 132
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.98 E-value=6.7e-08 Score=94.16 Aligned_cols=211 Identities=11% Similarity=0.133 Sum_probs=117.1
Q ss_pred CccEEEeecCCCchhh-hhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCC-CCCCCCCCcEEE
Q 011033 222 SLKSLFVWYCPKLESI-AERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPE-GGLPCAKLSKLR 299 (495)
Q Consensus 222 ~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~ 299 (495)
+|+.+.+.. .+..+ ..+|..+++|+.+++.. +.+..++.....+.+|+.+.+.. .++.++. .+..|++|+.++
T Consensus 158 ~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~-n~l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~ 232 (401)
T 4fdw_A 158 TVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSK-TKITKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIE 232 (401)
T ss_dssp CCCEEECCT--TCCEECSSTTTTCTTCCEEECTT-SCCSEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEE
T ss_pred CceEEEeCC--CccEehHHHhhCcccCCeeecCC-CcceEechhhEeecccCEEEeCC--chheehhhHhhCCCCCCEEe
Confidence 355555542 22222 23566677777777765 34555544333356777777753 3555554 555666777777
Q ss_pred ecCccccccccc-cccCCCCcceeEeccccccccCC--CCCCccceeEeeccCccch---hhhcccccCCCCCccceEEe
Q 011033 300 IYGCERLEALPK-GLHNLTSLQQLTIGGELPSLEED--GLPTNLHSLHIWGNMEIWK---SMIERGRGFHRFSSLRHLTI 373 (495)
Q Consensus 300 l~~~~~~~~~~~-~l~~l~~L~~L~l~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~~l~~L~~L~l 373 (495)
+..+ ++.++. .|.+ .+|+.+.+...+..++.. ..+++|+++.+.++..... .+.. ..+.+|++|+.+.+
T Consensus 233 l~~~--l~~I~~~aF~~-~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~--~aF~~c~~L~~l~l 307 (401)
T 4fdw_A 233 IPEN--VSTIGQEAFRE-SGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHP--YCLEGCPKLARFEI 307 (401)
T ss_dssp CCTT--CCEECTTTTTT-CCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECT--TTTTTCTTCCEECC
T ss_pred cCCC--ccCcccccccc-CCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECH--HHhhCCccCCeEEe
Confidence 7653 444443 3444 567777765555544433 3356677777766542100 1111 35677777777777
Q ss_pred eccccccccchhhhccccccCCCCCCCceeeeccccccccccc-ccccCCCCCeEeccCCCCCCCCCCCCC---ccccce
Q 011033 374 EGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSS-SIVDLQNLTHLNLVDCPKLKYFPEKGL---PSSLLQ 449 (495)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~---~~~L~~ 449 (495)
.+ .+..+.... |..+++|+.+++.. +++.|+. .+.+| +|+++.+.++ .+..++...+ ...++.
T Consensus 308 ~~---~i~~I~~~a------F~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~ 374 (401)
T 4fdw_A 308 PE---SIRILGQGL------LGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITV 374 (401)
T ss_dssp CT---TCCEECTTT------TTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCE
T ss_pred CC---ceEEEhhhh------hcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC-CCcccccccccCCCCCccE
Confidence 64 355544422 34456777777744 4666655 66677 7777777773 4555554322 245666
Q ss_pred eeccCC
Q 011033 450 LSIYRC 455 (495)
Q Consensus 450 L~l~~c 455 (495)
+.+-..
T Consensus 375 l~vp~~ 380 (401)
T 4fdw_A 375 IRVPAE 380 (401)
T ss_dssp EEECGG
T ss_pred EEeCHH
Confidence 666544
No 133
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.98 E-value=2.6e-09 Score=93.09 Aligned_cols=98 Identities=15% Similarity=0.126 Sum_probs=45.3
Q ss_pred cEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccc--cCCCCCCccEEEeeCCCCcccc-CCCCCCCCCCcEEEe
Q 011033 224 KSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPS--GLHNLGQLQEIEIWECENLVSF-PEGGLPCAKLSKLRI 300 (495)
Q Consensus 224 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~--~~~~l~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l 300 (495)
+.++++++. ++.+|..+. .+++.|++++| .+..++. .+..+++|++|++++| .++.+ +..+..+++|+.|++
T Consensus 11 ~~l~~s~~~-l~~ip~~~~--~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 11 TTVDCTGRG-LKEIPRDIP--LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TEEECTTSC-CSSCCSCCC--TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCCC-cCcCccCCC--CCCCEEECCCC-cCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEEC
Confidence 455555333 233443222 25556666553 3333332 2455555666666555 33333 334445555555555
Q ss_pred cCccccccccccccCCCCcceeEecc
Q 011033 301 YGCERLEALPKGLHNLTSLQQLTIGG 326 (495)
Q Consensus 301 ~~~~~~~~~~~~l~~l~~L~~L~l~~ 326 (495)
++|......+..+..+++|++|++++
T Consensus 86 s~N~l~~~~~~~~~~l~~L~~L~L~~ 111 (192)
T 1w8a_A 86 GENKIKEISNKMFLGLHQLKTLNLYD 111 (192)
T ss_dssp CSCCCCEECSSSSTTCTTCCEEECCS
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCC
Confidence 55543222233344455555555444
No 134
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.98 E-value=3.6e-09 Score=92.17 Aligned_cols=107 Identities=16% Similarity=0.215 Sum_probs=84.6
Q ss_pred CCCCccEEEeecCCCchhhhh-hcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCC-CCCCCCCCc
Q 011033 219 LPPSLKSLFVWYCPKLESIAE-RLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPE-GGLPCAKLS 296 (495)
Q Consensus 219 ~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~ 296 (495)
+++++++|++++|......+. .+..+++|+.|++++|......+..+..+++|++|++++| .++.++. .+..+++|+
T Consensus 27 ~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~ 105 (192)
T 1w8a_A 27 IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-KIKEISNKMFLGLHQLK 105 (192)
T ss_dssp CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-CCCEECSSSSTTCTTCC
T ss_pred CCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC-cCCccCHHHhcCCCCCC
Confidence 446899999998866554443 4889999999999996544444778999999999999998 5666554 577889999
Q ss_pred EEEecCccccccccccccCCCCcceeEecc
Q 011033 297 KLRIYGCERLEALPKGLHNLTSLQQLTIGG 326 (495)
Q Consensus 297 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 326 (495)
.|++++|......|..+..+++|++|++++
T Consensus 106 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 135 (192)
T 1w8a_A 106 TLNLYDNQISCVMPGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp EEECCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred EEECCCCcCCeeCHHHhhcCCCCCEEEeCC
Confidence 999999976656677788888888887766
No 135
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.96 E-value=3.5e-09 Score=92.30 Aligned_cols=104 Identities=18% Similarity=0.223 Sum_probs=86.5
Q ss_pred cccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCcccc-ccccCCCCccEEEEeCCCCCCCCCC--
Q 011033 18 ICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLP-QSSLSLSSLREIEIYKCSSLVSFPE-- 94 (495)
Q Consensus 18 ~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~-~~~~~l~~L~~L~l~~~~~l~~l~~-- 94 (495)
.++|++|++++ +.++.++. .|..+ ++|++|++++|. +..++ ..+..+++|++|++++| .++.+++
T Consensus 30 ~~~l~~L~L~~-n~i~~ip~-----~~~~l----~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~ 97 (193)
T 2wfh_A 30 PRDVTELYLDG-NQFTLVPK-----ELSNY----KHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYN-RLRCIPPRT 97 (193)
T ss_dssp CTTCCEEECCS-SCCCSCCG-----GGGGC----TTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTT
T ss_pred CCCCCEEECCC-CcCchhHH-----Hhhcc----cCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCCC-ccCEeCHHH
Confidence 46899999999 68888885 48888 999999999984 45554 56899999999999998 6777765
Q ss_pred CCCCCCCcEEEEeCCCCCCccccc-cccCCCCCccEEecccCc
Q 011033 95 VALPSKLKIIEIEGCDALKSLPEA-WMCDTNSSLETLYIEHCR 136 (495)
Q Consensus 95 ~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~ 136 (495)
+..+++|+.|++++|. +..+|.. +... ++|+.|++.+++
T Consensus 98 f~~l~~L~~L~L~~N~-l~~~~~~~~~~l--~~L~~L~L~~N~ 137 (193)
T 2wfh_A 98 FDGLKSLRLLSLHGND-ISVVPEGAFNDL--SALSHLAIGANP 137 (193)
T ss_dssp TTTCTTCCEEECCSSC-CCBCCTTTTTTC--TTCCEEECCSSC
T ss_pred hCCCCCCCEEECCCCC-CCeeChhhhhcC--ccccEEEeCCCC
Confidence 8889999999999988 6666664 4334 899999999864
No 136
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.90 E-value=1.7e-09 Score=113.89 Aligned_cols=110 Identities=21% Similarity=0.171 Sum_probs=68.7
Q ss_pred CccccccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCC
Q 011033 12 NELLQDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVS 91 (495)
Q Consensus 12 ~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~ 91 (495)
.+.+..++.|+.|++++ +.+..++.. +..+ ++|++|+|++| .+..+|..++.+++|++|+|++| .++.
T Consensus 217 ~~~~~~l~~L~~L~Ls~-n~l~~l~~~-----~~~l----~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N-~l~~ 284 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSN-LQIFNISAN-----IFKY----DFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHN-RLTS 284 (727)
T ss_dssp -----CCCCCCEEECTT-SCCSCCCGG-----GGGC----CSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTS-CCSS
T ss_pred hhhhccCCCCcEEECCC-CCCCCCChh-----hcCC----CCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCC-cCCc
Confidence 44456667777777777 456666654 4455 77777777776 44566666777777777777776 4556
Q ss_pred CCC-CCCCCCCcEEEEeCCCCCCccccccccCCCCCccEEecccCc
Q 011033 92 FPE-VALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCR 136 (495)
Q Consensus 92 l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 136 (495)
+|. ++.+++|++|++++|. +..+|..+..+ ++|+.|++++|.
T Consensus 285 lp~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l--~~L~~L~L~~N~ 327 (727)
T 4b8c_D 285 LPAELGSCFQLKYFYFFDNM-VTTLPWEFGNL--CNLQFLGVEGNP 327 (727)
T ss_dssp CCSSGGGGTTCSEEECCSSC-CCCCCSSTTSC--TTCCCEECTTSC
T ss_pred cChhhcCCCCCCEEECCCCC-CCccChhhhcC--CCccEEeCCCCc
Confidence 654 6667777777777765 55666665544 667777777653
No 137
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.90 E-value=1.5e-07 Score=91.82 Aligned_cols=132 Identities=15% Similarity=0.171 Sum_probs=87.4
Q ss_pred hhcCccccccc-cccEEecccccccccccchhhHHHHhhhhhcccccceeecccc--cCCcccc-ccccCCCCccEEEEe
Q 011033 9 KSHNELLQDIC-SLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYC--EGLVKLP-QSSLSLSSLREIEIY 84 (495)
Q Consensus 9 ~~~~~~~~~~~-~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~--~~l~~l~-~~~~~l~~L~~L~l~ 84 (495)
.....+|.++. .|+.+.+.+ .++.|... +|.+. .+|+.+.+..+ ..+..+. .+|..+.+|+.+.+.
T Consensus 53 ~Ig~~aF~~~~~~L~sI~iP~--svt~Ig~~----AF~~C----~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~ 122 (394)
T 4gt6_A 53 KIGDRVFCNYKYVLTSVQIPD--TVTEIGSN----AFYNC----TSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPIL 122 (394)
T ss_dssp EECTTTTTTCCSCCCEEEECT--TCCEECTT----TTTTC----TTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGG
T ss_pred EcCHhhccCCCCcCEEEEECC--CeeEEhHH----HhhCC----ccCceEeecCCCCCeeeEechhhchhcccceeeccC
Confidence 34566777775 599999977 47888775 67776 99999999875 2345554 357788888887776
Q ss_pred CCCCCCCCCC--CCCCCCCcEEEEeCCCCCCccccccccCCCCCccEEecccCccccccccc-cCCCCccEEEecc
Q 011033 85 KCSSLVSFPE--VALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGV-QLPRSLKRLDILS 157 (495)
Q Consensus 85 ~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~ 157 (495)
. .++.++. +..+.+|+.+.+... +..++...+ ..+.+|+.+.+.. .++.+... -...+|+.+.+..
T Consensus 123 ~--~~~~I~~~aF~~c~~L~~i~lp~~--~~~I~~~~F-~~c~~L~~i~~~~--~~~~I~~~aF~~~~l~~i~ip~ 191 (394)
T 4gt6_A 123 D--SVTEIDSEAFHHCEELDTVTIPEG--VTSVADGMF-SYCYSLHTVTLPD--SVTAIEERAFTGTALTQIHIPA 191 (394)
T ss_dssp T--TCSEECTTTTTTCTTCCEEECCTT--CCEECTTTT-TTCTTCCEEECCT--TCCEECTTTTTTCCCSEEEECT
T ss_pred C--ccceehhhhhhhhcccccccccce--eeeecccce-ecccccccccccc--eeeEeccccccccceeEEEECC
Confidence 5 4666654 777889999988753 344444333 3347788888865 34555444 1234566666643
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.88 E-value=1.2e-11 Score=108.66 Aligned_cols=63 Identities=13% Similarity=0.060 Sum_probs=32.4
Q ss_pred ccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCccccccccccccCCCCcceeEecc
Q 011033 261 LPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG 326 (495)
Q Consensus 261 l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 326 (495)
+|..+..+++|++|++++| .++.++ .+..+++|+.|++++|. ++.+|..+..+++|++|++++
T Consensus 40 l~~~~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~ 102 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISY 102 (198)
T ss_dssp CHHHHHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEE
T ss_pred hhHHHhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcC
Confidence 3334555566666666655 344444 44445556666665553 334544444445555555544
No 139
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.87 E-value=2.1e-08 Score=85.97 Aligned_cols=103 Identities=22% Similarity=0.217 Sum_probs=51.4
Q ss_pred CCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCccc-ccCCCCCCccEEEeeCCCCccccCC-CCCCCCCCcEE
Q 011033 221 PSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILP-SGLHNLGQLQEIEIWECENLVSFPE-GGLPCAKLSKL 298 (495)
Q Consensus 221 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L 298 (495)
+++++|++++|......+..+..+++|++|++++| .+..++ ..+..+++|+.|++++| .++.++. .+..+++|+.|
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L 105 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHEN-KLQSLPNGVFDKLTQLKEL 105 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCC-CccccCHHHhhCCcccCEE
Confidence 55666666655544333334555666666666654 333333 23455666666666665 3444443 23445556666
Q ss_pred EecCccccccccc-cccCCCCcceeEecc
Q 011033 299 RIYGCERLEALPK-GLHNLTSLQQLTIGG 326 (495)
Q Consensus 299 ~l~~~~~~~~~~~-~l~~l~~L~~L~l~~ 326 (495)
++++|. ++.+|. .+..+++|++|++++
T Consensus 106 ~l~~N~-l~~~~~~~~~~l~~L~~L~l~~ 133 (177)
T 2o6r_A 106 ALDTNQ-LKSVPDGIFDRLTSLQKIWLHT 133 (177)
T ss_dssp ECCSSC-CSCCCTTTTTTCTTCCEEECCS
T ss_pred ECcCCc-ceEeCHHHhcCCcccCEEEecC
Confidence 665553 333333 233444444444433
No 140
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.87 E-value=9.2e-09 Score=88.31 Aligned_cols=122 Identities=20% Similarity=0.239 Sum_probs=86.7
Q ss_pred cccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccc-cccCCCCccEEEEeCCCCCCCCCC--CC
Q 011033 20 SLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQ-SSLSLSSLREIEIYKCSSLVSFPE--VA 96 (495)
Q Consensus 20 ~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~-~~~~l~~L~~L~l~~~~~l~~l~~--~~ 96 (495)
..+.+++++ ++++.+|.. + +++|++|++++|. +..++. .+..+++|++|++++| .++.++. ++
T Consensus 8 ~~~~l~~~~-~~l~~~p~~-----~------~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~ 73 (177)
T 2o6r_A 8 SGTEIRCNS-KGLTSVPTG-----I------PSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFD 73 (177)
T ss_dssp ETTEEECCS-SCCSSCCTT-----C------CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTT
T ss_pred CCCEEEecC-CCCccCCCC-----C------CCCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCC-cceEeChhHcc
Confidence 357788887 567777653 1 2678888888874 455553 4678888888888887 6666665 67
Q ss_pred CCCCCcEEEEeCCCCCCccccc-cccCCCCCccEEecccCccccccccc--cCCCCccEEEeccCC
Q 011033 97 LPSKLKIIEIEGCDALKSLPEA-WMCDTNSSLETLYIEHCRTLTYLAGV--QLPRSLKRLDILSCD 159 (495)
Q Consensus 97 ~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~ 159 (495)
.+++|++|++++|. +..++.. +... ++|++|++++| .++.++.. ..+++|+.|+++++.
T Consensus 74 ~l~~L~~L~l~~N~-l~~~~~~~~~~l--~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 74 KLTKLTILYLHENK-LQSLPNGVFDKL--TQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp TCTTCCEEECCSSC-CCCCCTTTTTTC--TTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCccCEEECCCCC-ccccCHHHhhCC--cccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCC
Confidence 78888888888877 4555554 3334 78888888885 56666654 457888888888853
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.82 E-value=6.9e-11 Score=103.78 Aligned_cols=122 Identities=17% Similarity=0.185 Sum_probs=89.0
Q ss_pred cccEEecccc-cccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCC-CCC
Q 011033 20 SLRRLTITSC-PKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE-VAL 97 (495)
Q Consensus 20 ~L~~L~l~~c-~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~ 97 (495)
+|+...+.+. +.++.++. .+..+ ++|++|++++| .+..+| .+..+++|++|++++| .++.+|. +..
T Consensus 24 ~l~~~~l~~~~~~l~~l~~-----~~~~l----~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~ 91 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDA-----TLSTL----KACKHLALSTN-NIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAV 91 (198)
T ss_dssp TCSEEECCBCCTTCCCCHH-----HHHHT----TTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHH
T ss_pred chheeEeccccCcHhhhhH-----HHhcC----CCCCEEECCCC-CCcccc-ccccCCCCCEEECCCC-Ccccccchhhc
Confidence 3444444442 23444443 47888 99999999997 556677 6888999999999998 6777776 555
Q ss_pred CCCCcEEEEeCCCCCCccccccccCCCCCccEEecccCcccccccc---ccCCCCccEEEeccC
Q 011033 98 PSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAG---VQLPRSLKRLDILSC 158 (495)
Q Consensus 98 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~---~~~~~~L~~L~l~~~ 158 (495)
+++|++|++++|. +..+| .+... ++|+.|++++| .++.++. ...+++|+.|+++++
T Consensus 92 ~~~L~~L~L~~N~-l~~l~-~~~~l--~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 92 ADTLEELWISYNQ-IASLS-GIEKL--VNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp HHHCSEEEEEEEE-CCCHH-HHHHH--HHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred CCcCCEEECcCCc-CCcCC-ccccC--CCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCC
Confidence 6889999999987 55566 45444 88999999985 4665443 367889999999886
No 142
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.78 E-value=3.5e-07 Score=89.25 Aligned_cols=111 Identities=14% Similarity=0.132 Sum_probs=73.1
Q ss_pred cccccchhhHHHHhhhhhccc-ccceeecccccCCcccc-ccccCCCCccEEEEeCC--CCCCCCCC--CCCCCCCcEEE
Q 011033 32 LQSLVAEEEKDQQQQLCELSC-RLEYLRLSYCEGLVKLP-QSSLSLSSLREIEIYKC--SSLVSFPE--VALPSKLKIIE 105 (495)
Q Consensus 32 l~~i~~~~~~~~~~~l~~~~~-~L~~L~ls~~~~l~~l~-~~~~~l~~L~~L~l~~~--~~l~~l~~--~~~~~~L~~L~ 105 (495)
++.|.+. +|.+- . .|+.+.+-. .+..+. .+|.+|++|+.+.+..+ ..++.++. +..+.+|+.+.
T Consensus 51 Vt~Ig~~----aF~~~----~~~L~sI~iP~--svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~ 120 (394)
T 4gt6_A 51 VSKIGDR----VFCNY----KYVLTSVQIPD--TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIP 120 (394)
T ss_dssp EEEECTT----TTTTC----CSCCCEEEECT--TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCG
T ss_pred eeEcCHh----hccCC----CCcCEEEEECC--CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeec
Confidence 5566554 45432 3 489999975 345554 45889999999999775 24666765 77788999887
Q ss_pred EeCCCCCCccccccccCCCCCccEEecccCccccccccc--cCCCCccEEEecc
Q 011033 106 IEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGV--QLPRSLKRLDILS 157 (495)
Q Consensus 106 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~ 157 (495)
+.++ +..++...+ ..+.+|+.+.+.. .++.+... ..+.+|+.+.+.+
T Consensus 121 ~~~~--~~~I~~~aF-~~c~~L~~i~lp~--~~~~I~~~~F~~c~~L~~i~~~~ 169 (394)
T 4gt6_A 121 ILDS--VTEIDSEAF-HHCEELDTVTIPE--GVTSVADGMFSYCYSLHTVTLPD 169 (394)
T ss_dssp GGTT--CSEECTTTT-TTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT
T ss_pred cCCc--cceehhhhh-hhhcccccccccc--eeeeecccceecccccccccccc
Confidence 7653 455554433 3348899999865 34555544 4566777777654
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.77 E-value=2.4e-08 Score=85.28 Aligned_cols=100 Identities=18% Similarity=0.186 Sum_probs=75.1
Q ss_pred ccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCC--CCCC
Q 011033 21 LRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE--VALP 98 (495)
Q Consensus 21 L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~--~~~~ 98 (495)
-+.+++++ +.++.+|.+ + +++|++|++++|...+..|..++.+++|++|++++| .++.+|. +..+
T Consensus 14 ~~~l~~~~-n~l~~iP~~-----~------~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l 80 (174)
T 2r9u_A 14 QTLVNCQN-IRLASVPAG-----I------PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKL 80 (174)
T ss_dssp SSEEECCS-SCCSSCCSC-----C------CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTC
T ss_pred CcEEEeCC-CCCCccCCC-----c------CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCc
Confidence 47788888 678888774 2 178899999998443334667888999999999987 7777776 5788
Q ss_pred CCCcEEEEeCCCCCCccccc-cccCCCCCccEEecccCc
Q 011033 99 SKLKIIEIEGCDALKSLPEA-WMCDTNSSLETLYIEHCR 136 (495)
Q Consensus 99 ~~L~~L~l~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~ 136 (495)
++|++|++++|. +..+|.. +..+ ++|+.|++.+|+
T Consensus 81 ~~L~~L~L~~N~-l~~l~~~~~~~l--~~L~~L~L~~N~ 116 (174)
T 2r9u_A 81 TQLTQLDLNDNH-LKSIPRGAFDNL--KSLTHIYLYNNP 116 (174)
T ss_dssp TTCCEEECCSSC-CCCCCTTTTTTC--TTCSEEECCSSC
T ss_pred chhhEEECCCCc-cceeCHHHhccc--cCCCEEEeCCCC
Confidence 899999999887 5566664 4444 788888888854
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.74 E-value=3.7e-08 Score=83.81 Aligned_cols=100 Identities=19% Similarity=0.245 Sum_probs=76.7
Q ss_pred cccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccc-cccccCCCCccEEEEeCCCCCCCCCC--CC
Q 011033 20 SLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKL-PQSSLSLSSLREIEIYKCSSLVSFPE--VA 96 (495)
Q Consensus 20 ~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l-~~~~~~l~~L~~L~l~~~~~l~~l~~--~~ 96 (495)
..+++++++ +.++.+|.+ + +++|++|++++|. +..+ |..+..+++|++|++++| .++.++. +.
T Consensus 10 ~~~~l~~s~-n~l~~ip~~-----~------~~~l~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~ 75 (170)
T 3g39_A 10 SGTTVDCSG-KSLASVPTG-----I------PTTTQVLYLYDNQ-ITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFD 75 (170)
T ss_dssp ETTEEECTT-SCCSSCCSC-----C------CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTT
T ss_pred CCCEEEeCC-CCcCccCcc-----C------CCCCcEEEcCCCc-CCccChhhhcCcccCCEEECCCC-CcCccChhhcc
Confidence 467889998 678888764 3 2789999999984 4544 666888999999999997 6777776 67
Q ss_pred CCCCCcEEEEeCCCCCCccccc-cccCCCCCccEEecccCc
Q 011033 97 LPSKLKIIEIEGCDALKSLPEA-WMCDTNSSLETLYIEHCR 136 (495)
Q Consensus 97 ~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~ 136 (495)
.+++|++|++++|. +..++.. +..+ ++|+.|++++|+
T Consensus 76 ~l~~L~~L~L~~N~-l~~~~~~~~~~l--~~L~~L~L~~N~ 113 (170)
T 3g39_A 76 KLTQLTQLSLNDNQ-LKSIPRGAFDNL--KSLTHIWLLNNP 113 (170)
T ss_dssp TCTTCCEEECCSSC-CCCCCTTTTTTC--TTCCEEECCSSC
T ss_pred CCCCCCEEECCCCc-cCEeCHHHhcCC--CCCCEEEeCCCC
Confidence 88999999999987 5566654 4444 788999998864
No 145
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.72 E-value=4.9e-06 Score=80.55 Aligned_cols=74 Identities=14% Similarity=0.174 Sum_probs=45.9
Q ss_pred cccceeecccccCCccccc-cccCCCCccEEEEeCCCCCCCCCC--CCCCCCCcEEEEeCCCCCCccccccccCCCCCcc
Q 011033 52 CRLEYLRLSYCEGLVKLPQ-SSLSLSSLREIEIYKCSSLVSFPE--VALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLE 128 (495)
Q Consensus 52 ~~L~~L~ls~~~~l~~l~~-~~~~l~~L~~L~l~~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 128 (495)
.+|+.+.+.. .+..|+. +|..|.+|+.+.+.. .++.++. +..+ +|+.+.+.. .+..++...+.. .+|+
T Consensus 46 ~~i~~v~ip~--~vt~Ig~~aF~~C~~L~~I~lp~--~v~~Ig~~aF~~c-~l~~i~~~~--~l~~I~~~aF~~--~~L~ 116 (379)
T 4h09_A 46 DRISEVRVNS--GITSIGEANFNSCYNMTKVTVAS--TVTSIGDGAFADT-KLQSYTGME--RVKKFGDYVFQG--TDLD 116 (379)
T ss_dssp GGCSEEEECT--TEEEECTTTTTTCTTCCEEEECT--TCCEECTTTTTTC-CCCEEEECT--TCCEECTTTTTT--CCCS
T ss_pred cCCEEEEeCC--CccChHHHHhhCCCCCCEEEeCC--cceEechhhhcCC-CCceEECCc--eeeEeccceecc--CCcc
Confidence 7788888764 3455553 477888888888864 3666654 5555 566666653 244555444333 4677
Q ss_pred EEeccc
Q 011033 129 TLYIEH 134 (495)
Q Consensus 129 ~L~l~~ 134 (495)
.+.+..
T Consensus 117 ~i~lp~ 122 (379)
T 4h09_A 117 DFEFPG 122 (379)
T ss_dssp EEECCT
T ss_pred cccCCC
Confidence 777754
No 146
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.58 E-value=3e-07 Score=78.17 Aligned_cols=83 Identities=18% Similarity=0.292 Sum_probs=48.6
Q ss_pred CCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccc-cCCCCCCccEEEeeCCCCccccCC-CCCCCCCCcE
Q 011033 220 PPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPS-GLHNLGQLQEIEIWECENLVSFPE-GGLPCAKLSK 297 (495)
Q Consensus 220 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~ 297 (495)
+++++.|++++|......+..+..+++|+.|++++| .+..++. .+..+++|++|++++| .++.++. .+..+++|+.
T Consensus 29 ~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~ 106 (170)
T 3g39_A 29 PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDN-QLKSIPRGAFDNLKSLTH 106 (170)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCC-ccCEeCHHHhcCCCCCCE
Confidence 356666666666555555555666666666666664 3444433 3456666666666666 4455544 3455566666
Q ss_pred EEecCcc
Q 011033 298 LRIYGCE 304 (495)
Q Consensus 298 L~l~~~~ 304 (495)
|++++|+
T Consensus 107 L~L~~N~ 113 (170)
T 3g39_A 107 IWLLNNP 113 (170)
T ss_dssp EECCSSC
T ss_pred EEeCCCC
Confidence 6666654
No 147
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.52 E-value=5.6e-07 Score=76.72 Aligned_cols=79 Identities=22% Similarity=0.359 Sum_probs=35.7
Q ss_pred CCCcEEeeeCCCCCCcc-cccCCCCCCccEEEeeCCCCccccCCC-CCCCCCCcEEEecCccccccccc-cccCCCCcce
Q 011033 245 TSLETINISGCENLKIL-PSGLHNLGQLQEIEIWECENLVSFPEG-GLPCAKLSKLRIYGCERLEALPK-GLHNLTSLQQ 321 (495)
Q Consensus 245 ~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~ 321 (495)
++|+.|++++|. +..+ +..+.++++|+.|++++| .++.++.. +..+++|+.|++++|. ++.+|. .+..+++|++
T Consensus 33 ~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~ 109 (174)
T 2r9u_A 33 TDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDNH-LKSIPRGAFDNLKSLTH 109 (174)
T ss_dssp TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCSE
T ss_pred CCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCCc-cceeCHHHhccccCCCE
Confidence 455555555533 2222 344555555555555555 34444432 2344555555555543 233332 2444444444
Q ss_pred eEecc
Q 011033 322 LTIGG 326 (495)
Q Consensus 322 L~l~~ 326 (495)
|++++
T Consensus 110 L~L~~ 114 (174)
T 2r9u_A 110 IYLYN 114 (174)
T ss_dssp EECCS
T ss_pred EEeCC
Confidence 44433
No 148
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.50 E-value=3.1e-05 Score=74.93 Aligned_cols=121 Identities=12% Similarity=0.182 Sum_probs=77.9
Q ss_pred ccccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccc-cccCCCCccEEEEeCCCCCCCCC
Q 011033 15 LQDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQ-SSLSLSSLREIEIYKCSSLVSFP 93 (495)
Q Consensus 15 ~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~-~~~~l~~L~~L~l~~~~~l~~l~ 93 (495)
+....+|+.+.+.. .++.|.+. +|.+. .+|+.+++..+ +..++. +|..+ +|+.+.+.. .++.++
T Consensus 42 ~~~~~~i~~v~ip~--~vt~Ig~~----aF~~C----~~L~~I~lp~~--v~~Ig~~aF~~c-~l~~i~~~~--~l~~I~ 106 (379)
T 4h09_A 42 YKDRDRISEVRVNS--GITSIGEA----NFNSC----YNMTKVTVAST--VTSIGDGAFADT-KLQSYTGME--RVKKFG 106 (379)
T ss_dssp GGGGGGCSEEEECT--TEEEECTT----TTTTC----TTCCEEEECTT--CCEECTTTTTTC-CCCEEEECT--TCCEEC
T ss_pred cccccCCEEEEeCC--CccChHHH----HhhCC----CCCCEEEeCCc--ceEechhhhcCC-CCceEECCc--eeeEec
Confidence 45667899999987 68888875 67776 99999999753 566654 46676 688888865 466666
Q ss_pred C--CCCCCCCcEEEEeCCCCCCccccccccCCCCCccEEecccCccccccccc--cCCCCccEEEecc
Q 011033 94 E--VALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGV--QLPRSLKRLDILS 157 (495)
Q Consensus 94 ~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~ 157 (495)
. +.. .+|+.+++.+. +..+....+.. .+++.+.+.. .++.+... ..+.+++.+.+..
T Consensus 107 ~~aF~~-~~L~~i~lp~~--~~~i~~~~F~~--~~l~~~~~~~--~v~~i~~~~f~~~~~l~~~~~~~ 167 (379)
T 4h09_A 107 DYVFQG-TDLDDFEFPGA--TTEIGNYIFYN--SSVKRIVIPK--SVTTIKDGIGYKAENLEKIEVSS 167 (379)
T ss_dssp TTTTTT-CCCSEEECCTT--CCEECTTTTTT--CCCCEEEECT--TCCEECSCTTTTCTTCCEEEECT
T ss_pred cceecc-CCcccccCCCc--ccccccccccc--ceeeeeeccc--eeeccccchhccccccccccccc
Confidence 5 444 47999998763 34444433322 4566666644 24444433 3345566655544
No 149
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.42 E-value=2.5e-07 Score=77.81 Aligned_cols=90 Identities=16% Similarity=0.207 Sum_probs=52.5
Q ss_pred CccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccch--hhhccccccC-CCCCCCceeeeccccccccc
Q 011033 338 TNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFP--LEDKRLGTAL-PLPASLTSLRIVDFPNLERL 414 (495)
Q Consensus 338 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~l 414 (495)
..|++|++++|. +++.... .+.++++|++|++++| ..+...- .-.. . ...++|++|+|++|+++++-
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~---~L~~~~~L~~L~L~~C-~~ItD~gL~~L~~-----~~~~~~~L~~L~Ls~C~~ITD~ 130 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFD---HMEGLQYVEKIRLCKC-HYIEDGCLERLSQ-----LENLQKSMLEMEIISCGNVTDK 130 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGG---GGTTCSCCCEEEEESC-TTCCHHHHHHHHT-----CHHHHHHCCEEEEESCTTCCHH
T ss_pred ceEeEEeCcCCC-ccHHHHH---HhcCCCCCCEEEeCCC-CccCHHHHHHHHh-----cccccCCCCEEEcCCCCcCCHH
Confidence 368888888887 5544444 4677888888888887 2222211 1000 0 00135777777777766653
Q ss_pred cc-ccccCCCCCeEeccCCCCCCC
Q 011033 415 SS-SIVDLQNLTHLNLVDCPKLKY 437 (495)
Q Consensus 415 ~~-~~~~~~~L~~L~l~~c~~l~~ 437 (495)
.. .+..+++|++|++++|+.++.
T Consensus 131 Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 131 GIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHHHhcCCCCCEEECCCCCCCCc
Confidence 32 345667777777777766655
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.34 E-value=3.6e-07 Score=87.44 Aligned_cols=83 Identities=18% Similarity=0.237 Sum_probs=43.0
Q ss_pred hcCCCCCCcEEeeeCCCC----C-----CcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCcccccccc
Q 011033 240 RLDNNTSLETINISGCEN----L-----KILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALP 310 (495)
Q Consensus 240 ~~~~~~~L~~L~l~~~~~----~-----~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~ 310 (495)
+...+++|+.|.+..... + ..+...+..+|+|+.|+++++..+ .++. + ..++|++|++..|.......
T Consensus 134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l 210 (362)
T 2ra8_A 134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVV 210 (362)
T ss_dssp THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHH
T ss_pred hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHH
Confidence 344567778777754211 0 112233455677888888776322 2222 1 25677777777664222111
Q ss_pred ccc--cCCCCcceeEec
Q 011033 311 KGL--HNLTSLQQLTIG 325 (495)
Q Consensus 311 ~~l--~~l~~L~~L~l~ 325 (495)
..+ ..+|+|++|+|+
T Consensus 211 ~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 211 EDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHHHHSBCTTCCEEEEE
T ss_pred HHHHHccCCCCcEEEEe
Confidence 122 245666666653
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.33 E-value=8.6e-07 Score=84.84 Aligned_cols=99 Identities=22% Similarity=0.156 Sum_probs=64.9
Q ss_pred cEEecccccccccccchhhHHHHhhhhhcccccceeeccc-ccCCcccc-ccccCCCCccEEEEeCCCCCCCCCC--CCC
Q 011033 22 RRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSY-CEGLVKLP-QSSLSLSSLREIEIYKCSSLVSFPE--VAL 97 (495)
Q Consensus 22 ~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~-~~~l~~l~-~~~~~l~~L~~L~l~~~~~l~~l~~--~~~ 97 (495)
+.++.++.+.++.||. +..+ ++|+.|+|++ | .+..++ ..|+.+++|++|+|++| .++.+++ +..
T Consensus 11 ~~v~~~~~n~l~~ip~------l~~~----~~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~ 78 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH------LPGA----ENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHF 78 (347)
T ss_dssp SCEECCSSCCCTTTTT------SCSC----SCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGS
T ss_pred CEEEcCCCCCCCccCC------CCCC----CCeeEEEccCCC-CCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcC
Confidence 3456666326666544 5555 7788888875 5 555555 45777888888888877 5665554 677
Q ss_pred CCCCcEEEEeCCCCCCccccccccCCCCCccEEecccC
Q 011033 98 PSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHC 135 (495)
Q Consensus 98 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 135 (495)
+++|++|++++|. +..+|...+.. ..|+.|++.+|
T Consensus 79 l~~L~~L~l~~N~-l~~~~~~~~~~--~~L~~l~l~~N 113 (347)
T 2ifg_A 79 TPRLSRLNLSFNA-LESLSWKTVQG--LSLQELVLSGN 113 (347)
T ss_dssp CSCCCEEECCSSC-CSCCCSTTTCS--CCCCEEECCSS
T ss_pred CcCCCEEeCCCCc-cceeCHHHccc--CCceEEEeeCC
Confidence 7888888888876 55666554433 33777777764
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.32 E-value=8.5e-07 Score=84.86 Aligned_cols=87 Identities=21% Similarity=0.129 Sum_probs=72.0
Q ss_pred ccccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCC
Q 011033 15 LQDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE 94 (495)
Q Consensus 15 ~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~ 94 (495)
+..+++|++|++++++.++.++++ .|.++ ++|+.|+|++|...+..|..|..+++|++|+|++| .++.+|.
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~----~~~~l----~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~ 97 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELR----DLRGL----GELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-ALESLSW 97 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGG----GSCSC----CCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-CCSCCCS
T ss_pred CCCCCCeeEEEccCCCCCCCcChh----Hhccc----cCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-ccceeCH
Confidence 778899999999965789999875 68888 99999999998543444557899999999999998 7777775
Q ss_pred --CCCCCCCcEEEEeCCCC
Q 011033 95 --VALPSKLKIIEIEGCDA 111 (495)
Q Consensus 95 --~~~~~~L~~L~l~~~~~ 111 (495)
+..+. |+.|++.+|..
T Consensus 98 ~~~~~~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 98 KTVQGLS-LQELVLSGNPL 115 (347)
T ss_dssp TTTCSCC-CCEEECCSSCC
T ss_pred HHcccCC-ceEEEeeCCCc
Confidence 44444 99999999873
No 153
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.24 E-value=5.9e-08 Score=93.59 Aligned_cols=105 Identities=16% Similarity=0.106 Sum_probs=50.4
Q ss_pred CCccEEEeecCCCchhhhh----hcC-CCCCCcEEeeeCCCCCCcc-cccCCCCCCccEEEeeCCCCccccC-----CCC
Q 011033 221 PSLKSLFVWYCPKLESIAE----RLD-NNTSLETINISGCENLKIL-PSGLHNLGQLQEIEIWECENLVSFP-----EGG 289 (495)
Q Consensus 221 ~~L~~L~l~~~~~~~~~~~----~~~-~~~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~l~~l~-----~~~ 289 (495)
+.|+.|++++|........ .+. ..++|++|++++|.....- ......+++|++|++++| .+++.. ..+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L 150 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLL 150 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHHH
Confidence 4567777776665432222 222 2357777777775422111 111123456777777776 333211 111
Q ss_pred -CCCCCCcEEEecCccccc----cccccccCCCCcceeEecc
Q 011033 290 -LPCAKLSKLRIYGCERLE----ALPKGLHNLTSLQQLTIGG 326 (495)
Q Consensus 290 -~~~~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~ 326 (495)
...++|+.|++++|..-. .++..+...++|++|++++
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~ 192 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLH 192 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTT
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCC
Confidence 234467777777764211 1222334445555555544
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.19 E-value=1.4e-06 Score=83.27 Aligned_cols=63 Identities=27% Similarity=0.291 Sum_probs=38.5
Q ss_pred hhhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCC--CCCCCCCcEEEecC
Q 011033 237 IAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEG--GLPCAKLSKLRIYG 302 (495)
Q Consensus 237 ~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~~L~~L~l~~ 302 (495)
+...+..+++|++|.+.++..+ .++. + .+++|++|++..|..-...... ...+|+|+.|+|+.
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~ 228 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYV 228 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEEC
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEec
Confidence 3445667788999998876333 2333 3 3788999999876321111111 12567899998864
No 155
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.17 E-value=5.9e-08 Score=93.62 Aligned_cols=171 Identities=18% Similarity=0.128 Sum_probs=80.4
Q ss_pred CCCCcEEeeeCCCCCCc----ccccCC-CCCCccEEEeeCCCCccc--cCCCCCCCCCCcEEEecCccccccccccccCC
Q 011033 244 NTSLETINISGCENLKI----LPSGLH-NLGQLQEIEIWECENLVS--FPEGGLPCAKLSKLRIYGCERLEALPKGLHNL 316 (495)
Q Consensus 244 ~~~L~~L~l~~~~~~~~----l~~~~~-~l~~L~~L~l~~~~~l~~--l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l 316 (495)
++.|+.|++++|..... +...+. ..++|++|++++|. ++. +......+++|+.|++++|..-..-...+...
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 35677888877543211 111122 23577777777773 322 11222234467777777664211111111000
Q ss_pred CCcceeEeccccccccCCCCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccCCC
Q 011033 317 TSLQQLTIGGELPSLEEDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPL 396 (495)
Q Consensus 317 ~~L~~L~l~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 396 (495)
+ ....++|++|++++|..-..........+..+++|++|++++| .+..... ..+..++..
T Consensus 150 --------------L--~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N--~l~~~g~--~~L~~~L~~ 209 (372)
T 3un9_A 150 --------------L--LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT--GLGDEGL--ELLAAQLDR 209 (372)
T ss_dssp --------------H--HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTS--SCHHHHH--HHHHHHGGG
T ss_pred --------------H--HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCC--CCCcHHH--HHHHHHHhc
Confidence 0 0123456666666665222111111113455667777777776 3332110 000111123
Q ss_pred CCCCceeeecccccccc-----cccccccCCCCCeEeccCCCCCCC
Q 011033 397 PASLTSLRIVDFPNLER-----LSSSIVDLQNLTHLNLVDCPKLKY 437 (495)
Q Consensus 397 ~~~L~~L~l~~~~~l~~-----l~~~~~~~~~L~~L~l~~c~~l~~ 437 (495)
+++|+.|++++| .++. +...+...++|++|++++|+ ++.
T Consensus 210 ~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~-i~~ 253 (372)
T 3un9_A 210 NRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFNE-LSS 253 (372)
T ss_dssp CSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTSS-CCH
T ss_pred CCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCCC-CCH
Confidence 456777777773 4443 33345566778888888754 443
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.16 E-value=1.6e-06 Score=72.89 Aligned_cols=85 Identities=14% Similarity=0.137 Sum_probs=40.0
Q ss_pred CccEEEEeCCCCCCCCCC--CCCCCCCcEEEEeCCCCCCccccc-cccC--CCCCccEEecccCccccc--cccccCCCC
Q 011033 77 SLREIEIYKCSSLVSFPE--VALPSKLKIIEIEGCDALKSLPEA-WMCD--TNSSLETLYIEHCRTLTY--LAGVQLPRS 149 (495)
Q Consensus 77 ~L~~L~l~~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~-~~~~--~~~~L~~L~l~~~~~l~~--~~~~~~~~~ 149 (495)
+|++|++++|. +++.+. +..+++|++|++++|..+++..-. +... .+++|++|++++|..++. +.....+++
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred eEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 45555555553 433221 445555555555555544432211 1110 013456666666555544 222233456
Q ss_pred ccEEEeccCCCcc
Q 011033 150 LKRLDILSCDNIR 162 (495)
Q Consensus 150 L~~L~l~~~~~l~ 162 (495)
|+.|++++|..++
T Consensus 141 L~~L~L~~c~~It 153 (176)
T 3e4g_A 141 LKYLFLSDLPGVK 153 (176)
T ss_dssp CCEEEEESCTTCC
T ss_pred CCEEECCCCCCCC
Confidence 6666666665554
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.70 E-value=1e-05 Score=73.32 Aligned_cols=66 Identities=18% Similarity=0.097 Sum_probs=41.2
Q ss_pred hcccccceeecccccCCc--cccccccCCCCccEEEEeCCCCCCCCCCCCCCC--CCcEEEEeCCCCCCcc
Q 011033 49 ELSCRLEYLRLSYCEGLV--KLPQSSLSLSSLREIEIYKCSSLVSFPEVALPS--KLKIIEIEGCDALKSL 115 (495)
Q Consensus 49 ~~~~~L~~L~ls~~~~l~--~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~--~L~~L~l~~~~~~~~~ 115 (495)
..+++|+.|+|++|.... .+|..+..+++|++|+|++| .+..+..+..+. +|++|++++|+....+
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~ 236 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGLKLEELWLDGNSLCDTF 236 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGGGGTTSCCSEEECTTSTTGGGC
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCchhhhhcccCCcceEEccCCcCcccc
Confidence 345788888888874322 34445567788888888876 555554333333 7777777777744333
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.62 E-value=2.2e-05 Score=67.41 Aligned_cols=11 Identities=9% Similarity=0.066 Sum_probs=5.7
Q ss_pred CCccEEEeccC
Q 011033 148 RSLKRLDILSC 158 (495)
Q Consensus 148 ~~L~~L~l~~~ 158 (495)
++|+.|+++++
T Consensus 151 ~~L~~L~L~~n 161 (185)
T 1io0_A 151 TTLLKFGYHFT 161 (185)
T ss_dssp SSCCEEECCCS
T ss_pred CCcCEEeccCC
Confidence 45555555543
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.44 E-value=7.8e-05 Score=67.52 Aligned_cols=81 Identities=21% Similarity=0.135 Sum_probs=58.4
Q ss_pred cccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCC--CccEEEEeCCCCCCCCC
Q 011033 16 QDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLS--SLREIEIYKCSSLVSFP 93 (495)
Q Consensus 16 ~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~--~L~~L~l~~~~~l~~l~ 93 (495)
..+++|++|++++ +.++.++. ++..+..+ ++|+.|+|++| .+..+.. +..++ +|++|++++|+....+|
T Consensus 167 ~~l~~L~~L~Ls~-N~l~~l~~--l~~~~~~l----~~L~~L~Ls~N-~i~~~~~-l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSN-NRLYRLDD--MSSIVQKA----PNLKILNLSGN-ELKSERE-LDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTT-SCCCCCGG--GTTHHHHS----TTCCEEECTTS-CCCSGGG-GGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCC-CCCCCCcc--chhHHhhC----CCCCEEECCCC-ccCCchh-hhhcccCCcceEEccCCcCccccC
Confidence 4689999999999 78887653 11245666 99999999998 5555532 44444 99999999996555454
Q ss_pred C--------CCCCCCCcEEE
Q 011033 94 E--------VALPSKLKIIE 105 (495)
Q Consensus 94 ~--------~~~~~~L~~L~ 105 (495)
. +..+++|+.|+
T Consensus 238 ~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 238 DQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp SHHHHHHHHHHHCTTCCEES
T ss_pred cchhHHHHHHHHCcccCeEC
Confidence 2 45677777775
No 160
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.74 E-value=0.00053 Score=58.68 Aligned_cols=117 Identities=6% Similarity=0.043 Sum_probs=78.3
Q ss_pred CccccccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCc----cccccccCCCCccEEEEeCCC
Q 011033 12 NELLQDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLV----KLPQSSLSLSSLREIEIYKCS 87 (495)
Q Consensus 12 ~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~----~l~~~~~~l~~L~~L~l~~~~ 87 (495)
...+...+.|++|++++|..+.+-....+...+.. .++|++|+|++|..-. .+...+...+.|++|+|++|
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~----~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N- 103 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKT----NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN- 103 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTT----CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHh----CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-
Confidence 34566789999999999636654222211222333 4899999999985422 23444667789999999998
Q ss_pred CCCCCC------CCCCCCCCcEEEE--eCCCCCCc-----cccccccCCCCCccEEecccCc
Q 011033 88 SLVSFP------EVALPSKLKIIEI--EGCDALKS-----LPEAWMCDTNSSLETLYIEHCR 136 (495)
Q Consensus 88 ~l~~l~------~~~~~~~L~~L~l--~~~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~ 136 (495)
.+++-+ .+...+.|++|++ ++|. ++. +...+... ++|++|++++|.
T Consensus 104 ~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n--~~L~~L~L~~n~ 162 (185)
T 1io0_A 104 FISGSGILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKN--TTLLKFGYHFTQ 162 (185)
T ss_dssp CCCHHHHHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHC--SSCCEEECCCSS
T ss_pred cCCHHHHHHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhC--CCcCEEeccCCC
Confidence 666432 1566788999999 7776 433 23333333 789999999863
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.32 E-value=0.057 Score=42.75 Aligned_cols=52 Identities=23% Similarity=0.299 Sum_probs=36.8
Q ss_pred eEEeeccccccc--cchhhhccccccCCCCCCCceeeeccccccccccc-ccccCCCCCeEeccCCC
Q 011033 370 HLTIEGCDDDMV--SFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSS-SIVDLQNLTHLNLVDCP 433 (495)
Q Consensus 370 ~L~l~~~~~~~~--~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~ 433 (495)
.++-++. ++. .+|.. .|++|+.|+|++ +.++.++. .+..+++|++|++++|+
T Consensus 12 ~v~Cs~~--~L~~~~vP~~---------lp~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRR--GLTWASLPTA---------FPVDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSS--CCCTTTSCSC---------CCTTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCC--CCccccCCCC---------CCcCCCEEECCC-CcCCccChhhhhhccccCEEEecCCC
Confidence 4444454 555 66652 566788888888 77888876 56778888888888865
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.65 E-value=0.11 Score=41.11 Aligned_cols=52 Identities=19% Similarity=0.160 Sum_probs=40.6
Q ss_pred eeeeccccccc--ccccccccCCCCCeEeccCCCCCCCCCCCCC--ccccceeeccCCch
Q 011033 402 SLRIVDFPNLE--RLSSSIVDLQNLTHLNLVDCPKLKYFPEKGL--PSSLLQLSIYRCPL 457 (495)
Q Consensus 402 ~L~l~~~~~l~--~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c~~ 457 (495)
.++-++ ..++ .+|..+. ++|++|+|++ ++|+.++...+ +++|++|++.+||.
T Consensus 12 ~v~Cs~-~~L~~~~vP~~lp--~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGR-RGLTWASLPTAFP--VDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCS-SCCCTTTSCSCCC--TTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCC-CCCccccCCCCCC--cCCCEEECCC-CcCCccChhhhhhccccCEEEecCCCe
Confidence 455555 6677 7885443 5799999999 67999998654 78999999999973
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.64 E-value=0.046 Score=46.63 Aligned_cols=66 Identities=11% Similarity=0.192 Sum_probs=33.4
Q ss_pred HhhhhhcccccceeecccccCCcc-----ccccccCCCCccEEEEeCCCCCCCCCC------CCCCCCCcEEEEeCCC
Q 011033 44 QQQLCELSCRLEYLRLSYCEGLVK-----LPQSSLSLSSLREIEIYKCSSLVSFPE------VALPSKLKIIEIEGCD 110 (495)
Q Consensus 44 ~~~l~~~~~~L~~L~ls~~~~l~~-----l~~~~~~l~~L~~L~l~~~~~l~~l~~------~~~~~~L~~L~l~~~~ 110 (495)
+..+-..-+.|+.|+|+++..+++ +...+..-+.|++|+|++| .+++-+. +..-..|++|++++|.
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence 444333336666666665423331 2233445556666666665 4443221 2234556666666665
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=89.27 E-value=0.07 Score=45.48 Aligned_cols=13 Identities=23% Similarity=0.297 Sum_probs=7.4
Q ss_pred CCCCccEEEeeCC
Q 011033 267 NLGQLQEIEIWEC 279 (495)
Q Consensus 267 ~l~~L~~L~l~~~ 279 (495)
+-+.|+.|+++++
T Consensus 39 ~n~~L~~L~L~~n 51 (197)
T 1pgv_A 39 DDTDLKEVNINNM 51 (197)
T ss_dssp TCSSCCEEECTTC
T ss_pred cCCCccEEECCCC
Confidence 3456666666554
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=45.34 E-value=23 Score=25.93 Aligned_cols=37 Identities=14% Similarity=0.108 Sum_probs=25.9
Q ss_pred cccCCCCccEEEEeCCCCCCCCCC--CCCCCCCcEEEEeCC
Q 011033 71 SSLSLSSLREIEIYKCSSLVSFPE--VALPSKLKIIEIEGC 109 (495)
Q Consensus 71 ~~~~l~~L~~L~l~~~~~l~~l~~--~~~~~~L~~L~l~~~ 109 (495)
.|..|.+|+.+.|.. .++.++. +..|.+|+.+.+...
T Consensus 15 aF~~c~~L~~i~iP~--~v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 15 LFAGNTVIREITVQP--NIGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp TTTTCTTCCCEEECT--TSSCCCTTSSTTCTTCCCEEECCS
T ss_pred HhcCCCCCcEEEcCC--chheEcHHHHhccCCccEEEEcCC
Confidence 466777788887765 4666654 777777887777653
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=29.79 E-value=1.4e+02 Score=21.65 Aligned_cols=35 Identities=14% Similarity=0.243 Sum_probs=14.7
Q ss_pred cCCCCCCcEEeeeCCCCCCcc-cccCCCCCCccEEEee
Q 011033 241 LDNNTSLETINISGCENLKIL-PSGLHNLGQLQEIEIW 277 (495)
Q Consensus 241 ~~~~~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~ 277 (495)
|.++.+|+++.|-.. +..+ ..+|.+|.+|+.+.+.
T Consensus 16 F~~c~~L~~i~iP~~--v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 16 FAGNTVIREITVQPN--IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp TTTCTTCCCEEECTT--SSCCCTTSSTTCTTCCCEEEC
T ss_pred hcCCCCCcEEEcCCc--hheEcHHHHhccCCccEEEEc
Confidence 444444554444331 2222 2234445555555544
Done!