BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 011035
         (495 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound
           Extrusion (Mate) Transporter
 pdb|3MKT|B Chain B, Structure Of A Cation-Bound Multidrug And Toxin Compound
           Extrusion (Mate) Transporter
 pdb|3MKU|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound
           Extrusion (Mate) Transporter
 pdb|3MKU|B Chain B, Structure Of A Cation-Bound Multidrug And Toxin Compound
           Extrusion (Mate) Transporter
          Length = 460

 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 87/437 (19%), Positives = 183/437 (41%), Gaps = 23/437 (5%)

Query: 45  RRFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTV---VVAFN 101
            R+  E+  L  +  P + + +A   M  +    AG +  +++AA+SIA ++    + F 
Sbjct: 5   HRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSILFG 64

Query: 102 FGLLLGMASALETLCGQAFGGKKYYMLGVYMQRSWIVLFICCVLLLPLYVFASPVLKLLG 161
            GLL+    AL  +  Q  G  + + +   + +  I+  +  V ++ +      +++ + 
Sbjct: 65  VGLLM----ALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMD 120

Query: 162 QPDDVAELS-GVVSLWLLPVHFSFAFQFPLQRFLQSQLKT---MVIXXXXXXXXXXXXXX 217
             + +A  + G +   +  V     FQ  L+ F      T   MVI              
Sbjct: 121 VEEAMATKTVGYMHAVIFAVPAYLLFQ-ALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWI 179

Query: 218 XXXXXY-KMQLGLIGTAITLSFSWWVLIFGMFGYVACG---GCPRTWTGFSMEAFSDLWE 273
                +   +LG +G  +  +  +W+++  +  Y+         + +  F      +L  
Sbjct: 180 FVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIR 239

Query: 274 FVKLSVASGVMLCLENWYYRVLILMTGNLQNAKIAVDALSICMSINGWELMIPLSFFAGT 333
             +L       L  E   + V+ L+   L +  +A  A  + ++ +    M P+S  A  
Sbjct: 240 LFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVA--AHQVALNFSSLVFMFPMSIGAAV 297

Query: 334 GVRVSNELGAGNGKGARFATIVSVVTSIAIGVXXXXXXXXXHNELALIFSSSEAILQVVS 393
            +RV ++LG  + KGA  A  V ++T +A              ++AL+++ ++ ++ +  
Sbjct: 298 SIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAM 357

Query: 394 KMSILLAFTILLNSVQPVLSGVAVGSGWQSIVAYINLGCYYLIGVPLGILLG---WVFHQ 450
           ++ +  A    +++VQ V +G   G    + + +     Y+++G+P G +LG   W+  Q
Sbjct: 358 QLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQ 417

Query: 451 --GVMGIWAGMIFGGTA 465
             G  G W G I G +A
Sbjct: 418 PLGAKGFWLGFIIGLSA 434


>pdb|4HUK|A Chain A, Mate Transporter Norm-ng In Complex With Tpp And Monobody
 pdb|4HUL|A Chain A, Mate Transporter Norm-ng In Complex With Cs+ And Monobody
 pdb|4HUM|A Chain A, Mate Transporter Norm-ng In Complex With Ethidium And
           Monobody
 pdb|4HUN|A Chain A, Mate Transporter Norm-ng In Complex With R6g And Monobody
          Length = 459

 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 86/216 (39%), Gaps = 11/216 (5%)

Query: 245 FGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVASGVMLCLENWYYRVLILMTGNLQN 304
           F  FG  A  G P  W       F  +W   K+    G+   LE   +  ++ +      
Sbjct: 223 FRPFGLTAKFGKP-DWA-----VFKQIW---KIGAPIGLSYFLEASAFSFIVFLIAPFGE 273

Query: 305 AKIAVDALSICMSINGWELMIPLSFFAGTGVRVSNELGAGNGKGARFATIVSVVTSIAIG 364
             +A   + I  S++G   MIP S  +   VR+   LG      AR+ + VS+V+   + 
Sbjct: 274 DYVAAQQVGI--SLSGILYMIPQSVGSAGTVRIGFSLGRREFSRARYISGVSLVSGWVLA 331

Query: 365 VXXXXXXXXXHNELALIFSSSEAILQVVSKMSILLAFTILLNSVQPVLSGVAVGSGWQSI 424
           V          + LA +++   A+L + S + +        +  Q + S    G     +
Sbjct: 332 VITVLSLVLFRSPLASMYNDDPAVLSIASTVLLFAGLFQPADFTQCIASYALRGYKVTKV 391

Query: 425 VAYINLGCYYLIGVPLGILLGWVFHQGVMGIWAGMI 460
             +I+   ++  G+  G LL + F  G+ G W  +I
Sbjct: 392 PMFIHAAAFWGCGLLPGYLLAYRFDMGIYGFWTALI 427


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.140    0.438 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,455,083
Number of Sequences: 62578
Number of extensions: 453675
Number of successful extensions: 930
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 922
Number of HSP's gapped (non-prelim): 8
length of query: 495
length of database: 14,973,337
effective HSP length: 103
effective length of query: 392
effective length of database: 8,527,803
effective search space: 3342898776
effective search space used: 3342898776
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (25.0 bits)