Query 011035
Match_columns 495
No_of_seqs 246 out of 2120
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 07:23:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011035.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011035hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 1.5E-56 3.2E-61 444.2 54.6 437 47-488 12-453 (455)
2 PRK10189 MATE family multidrug 100.0 1.2E-52 2.6E-57 420.2 54.7 430 50-483 27-467 (478)
3 PRK00187 multidrug efflux prot 100.0 5.9E-51 1.3E-55 408.1 56.3 427 48-478 6-444 (464)
4 PRK01766 multidrug efflux prot 100.0 7.1E-49 1.5E-53 394.6 56.3 434 45-482 5-446 (456)
5 PRK09575 vmrA multidrug efflux 100.0 4.2E-49 9E-54 394.2 53.2 426 49-481 9-438 (453)
6 PRK10367 DNA-damage-inducible 100.0 1.1E-48 2.3E-53 388.2 53.7 422 49-482 6-434 (441)
7 KOG1347 Uncharacterized membra 100.0 2.6E-38 5.6E-43 310.8 35.6 444 48-493 24-467 (473)
8 TIGR01695 mviN integral membra 100.0 3.1E-36 6.6E-41 307.6 51.8 413 54-478 2-428 (502)
9 TIGR02900 spore_V_B stage V sp 100.0 4.3E-36 9.2E-41 305.6 48.0 414 55-478 2-434 (488)
10 TIGR00797 matE putative efflux 100.0 1.2E-35 2.7E-40 288.0 43.3 337 60-399 1-341 (342)
11 PRK15099 O-antigen translocase 100.0 9.5E-34 2.1E-38 281.5 46.1 404 54-477 3-411 (416)
12 PF03023 MVIN: MviN-like prote 100.0 5.7E-29 1.2E-33 247.4 50.0 386 82-478 5-403 (451)
13 COG0728 MviN Uncharacterized m 100.0 6.1E-27 1.3E-31 228.4 51.3 419 52-478 7-437 (518)
14 PRK10459 colanic acid exporter 100.0 2.3E-27 5E-32 241.3 47.7 398 51-477 4-404 (492)
15 COG2244 RfbX Membrane protein 100.0 7.7E-25 1.7E-29 222.2 41.1 391 50-462 4-396 (480)
16 PRK00187 multidrug efflux prot 99.9 1.8E-20 3.9E-25 188.2 27.2 206 267-477 5-214 (464)
17 COG0534 NorM Na+-driven multid 99.9 2.4E-20 5.2E-25 185.6 27.8 208 268-479 13-222 (455)
18 PRK10367 DNA-damage-inducible 99.9 2.8E-20 6E-25 185.1 27.7 206 269-477 6-211 (441)
19 PRK10189 MATE family multidrug 99.9 3E-20 6.6E-25 186.6 27.8 204 269-476 26-235 (478)
20 PRK01766 multidrug efflux prot 99.9 1E-19 2.2E-24 183.3 28.6 208 267-478 7-218 (456)
21 PRK09575 vmrA multidrug efflux 99.9 6.3E-20 1.4E-24 183.9 26.4 206 269-478 9-215 (453)
22 TIGR01695 mviN integral membra 99.8 1.3E-16 2.9E-21 163.0 32.0 204 49-254 220-428 (502)
23 PF01943 Polysacc_synt: Polysa 99.8 8.8E-16 1.9E-20 143.8 33.2 270 55-340 2-272 (273)
24 TIGR00797 matE putative efflux 99.8 8E-17 1.7E-21 156.2 24.5 194 280-477 1-196 (342)
25 PF01554 MatE: MatE; InterPro 99.8 2.7E-18 5.8E-23 147.4 8.7 162 280-443 1-162 (162)
26 PF03023 MVIN: MviN-like prote 99.7 6.7E-15 1.4E-19 146.8 30.2 204 49-254 195-403 (451)
27 PF01554 MatE: MatE; InterPro 99.7 1.1E-17 2.4E-22 143.6 6.5 160 60-220 1-162 (162)
28 TIGR02900 spore_V_B stage V sp 99.7 4.2E-15 9.2E-20 151.4 25.9 202 47-253 220-433 (488)
29 COG0728 MviN Uncharacterized m 99.7 3E-13 6.6E-18 132.9 34.7 204 49-254 229-437 (518)
30 PRK10459 colanic acid exporter 99.6 8.6E-13 1.9E-17 134.4 34.2 201 48-254 203-405 (492)
31 PF13440 Polysacc_synt_3: Poly 99.6 2.2E-12 4.9E-17 119.1 31.7 247 70-339 2-250 (251)
32 PRK15099 O-antigen translocase 99.6 3.3E-13 7.2E-18 134.3 26.4 199 48-253 211-411 (416)
33 COG2244 RfbX Membrane protein 99.5 4E-12 8.7E-17 129.2 26.1 185 47-236 208-394 (480)
34 PF04506 Rft-1: Rft protein; 99.4 1.9E-09 4.2E-14 108.4 32.8 421 55-478 4-470 (549)
35 KOG1347 Uncharacterized membra 99.3 3.5E-10 7.6E-15 112.2 20.7 205 268-477 24-229 (473)
36 PF07260 ANKH: Progressive ank 99.1 3E-07 6.4E-12 83.1 29.5 311 50-372 9-343 (345)
37 KOG2864 Nuclear division RFT1 99.1 1E-06 2.2E-11 83.2 33.9 417 50-477 6-448 (530)
38 PF04506 Rft-1: Rft protein; 98.5 2.7E-05 5.8E-10 78.9 22.0 203 51-254 252-470 (549)
39 PF14667 Polysacc_synt_C: Poly 98.5 2.6E-05 5.6E-10 65.2 17.8 79 174-254 2-80 (146)
40 PF14667 Polysacc_synt_C: Poly 98.2 1.8E-05 3.8E-10 66.2 10.1 79 396-478 2-80 (146)
41 PF01943 Polysacc_synt: Polysa 98.1 0.00057 1.2E-08 63.6 20.8 187 276-477 3-190 (273)
42 PF07260 ANKH: Progressive ank 98.1 0.002 4.3E-08 58.9 22.3 165 269-444 8-179 (345)
43 KOG2864 Nuclear division RFT1 98.0 0.0033 7.1E-08 60.2 21.5 201 52-254 239-449 (530)
44 PF13440 Polysacc_synt_3: Poly 97.9 0.0053 1.1E-07 56.3 22.0 163 296-476 8-171 (251)
45 COG4267 Predicted membrane pro 97.1 0.24 5.3E-06 46.6 36.3 319 101-445 73-413 (467)
46 PF05975 EcsB: Bacterial ABC t 90.3 20 0.00043 35.3 16.6 39 345-383 89-127 (386)
47 COG4267 Predicted membrane pro 66.6 1.3E+02 0.0028 29.2 20.1 135 325-477 76-210 (467)
48 PF04505 Dispanin: Interferon- 48.1 1.1E+02 0.0023 22.4 6.7 35 330-364 37-71 (82)
49 PF02487 CLN3: CLN3 protein; 37.8 1.1E+02 0.0024 30.1 6.9 25 47-71 238-262 (402)
50 PF14184 YrvL: Regulatory prot 30.6 2.9E+02 0.0063 22.3 12.6 92 134-227 6-98 (132)
51 PTZ00206 amino acid transporte 29.6 6.1E+02 0.013 25.7 14.3 16 115-130 113-128 (467)
52 PRK09546 zntB zinc transporter 29.1 1.4E+02 0.0031 28.4 6.1 45 435-480 272-323 (324)
53 TIGR00383 corA magnesium Mg(2+ 26.8 1.9E+02 0.004 27.4 6.5 51 426-480 259-317 (318)
54 PF03904 DUF334: Domain of unk 26.0 2.8E+02 0.006 24.7 6.5 37 125-161 143-179 (230)
55 TIGR00822 EII-Sor PTS system, 25.7 5.4E+02 0.012 23.8 16.1 33 322-354 109-141 (265)
56 PF10160 Tmemb_40: Predicted m 25.0 5.4E+02 0.012 23.6 12.2 84 344-430 109-192 (261)
57 PF06781 UPF0233: Uncharacteri 24.5 3E+02 0.0065 20.4 7.5 40 60-99 35-76 (87)
58 PF04505 Dispanin: Interferon- 23.2 2.8E+02 0.0061 20.2 5.3 32 114-145 42-73 (82)
59 TIGR00927 2A1904 K+-dependent 21.9 2.1E+02 0.0046 31.6 6.0 41 106-146 979-1019(1096)
60 PF04123 DUF373: Domain of unk 21.6 7.4E+02 0.016 23.9 17.7 34 170-203 263-296 (344)
61 PF04995 CcmD: Heme exporter p 21.6 2.3E+02 0.0049 17.9 4.3 9 479-487 31-39 (46)
62 TIGR03141 cytochro_ccmD heme e 21.0 2.3E+02 0.005 17.8 4.0 12 455-467 8-19 (45)
63 KOG2532 Permease of the major 20.9 7.7E+02 0.017 25.0 9.7 83 391-476 132-217 (466)
64 COG0598 CorA Mg2+ and Co2+ tra 20.7 2E+02 0.0043 27.4 5.3 44 435-480 270-321 (322)
65 PRK11085 magnesium/nickel/coba 20.4 6.5E+02 0.014 24.0 8.5 45 435-480 264-315 (316)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=1.5e-56 Score=444.18 Aligned_cols=437 Identities=24% Similarity=0.377 Sum_probs=412.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcc
Q 011035 47 FWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYY 126 (495)
Q Consensus 47 ~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~~~~~~~ 126 (495)
.++..|+++++++|++++++++.+++.+|++++||+|++++++.++++++..+ ...+..|++.++.++++|++|+||++
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~-~~~~~~gl~~g~~~liaq~~Ga~~~~ 90 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFL-IIAIFIGLGTGTTVLVAQAIGAGDRK 90 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHcCCchH
Confidence 55689999999999999999999999999999999999999999999999998 88899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHccchhHHHH
Q 011035 127 MLGVYMQRSWIVLFICCVLLLP-LYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAW 205 (495)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 205 (495)
++++..++++.++++++++..+ .+.+.++++.+++.++++.+.+..|+++..++.|+..++..+.+.+|+.||+|.++.
T Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~ 170 (455)
T COG0534 91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY 170 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence 9999999999999999977765 589999999999998889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhh-cC-CccchHHHHHHHHHHHHHHHHHHHHhcCCc--CCccCCCChHhHhhHHHHHHHHhHH
Q 011035 206 VSLASLLVHLLVTWLFVYK-MQ-LGLIGTAITLSFSWWVLIFGMFGYVACGGC--PRTWTGFSMEAFSDLWEFVKLSVAS 281 (495)
Q Consensus 206 ~~~~~~~~~i~~~~~li~~-~~-~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~ 281 (495)
.++++.++|+++|++|+++ ++ +|+.|+++||++++.+.+++..+++.+++. .....+..+.+++.+|++++.|+|.
T Consensus 171 ~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~ 250 (455)
T COG0534 171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPI 250 (455)
T ss_pred HHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccH
Confidence 9999999999999999998 67 999999999999999999999999988752 3332334355668999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHH
Q 011035 282 GVMLCLENWYYRVLILMTGNLQNAKIAVDALSICMSINGWELMIPLSFFAGTGVRVSNELGAGNGKGARFATIVSVVTSI 361 (495)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~i~~~~~~~~~~l~~a~~~~i~~~~g~~~~~~~~~~~~~~~~~~~ 361 (495)
++++..+...+...+.+++++| +.++|+|+++.++.++.++++.+++++..|.+++++|+||++++++..+.+..+++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~ 328 (455)
T COG0534 251 FLESLSESLGFLLLTLFVARLG--TVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSL 328 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 55899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhcCCcchhHHHHHHHHHHhhhHHH
Q 011035 362 AIGVFFFILILIFHNELALIFSSSEAILQVVSKMSILLAFTILLNSVQPVLSGVAVGSGWQSIVAYINLGCYYLIGVPLG 441 (495)
Q Consensus 362 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~i~l~ 441 (495)
.+++..+++++++++++.++|++|+++.+.+..++++.++..++++.+.+..+++||.||++.+++.++.+.|.+.+|+.
T Consensus 329 ~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~ 408 (455)
T COG0534 329 LIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLA 408 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHH
Q 011035 442 ILLGWVFHQGVMGIWAGMIFGGTAVQTLILAIITMRCDWDREAEKAA 488 (495)
Q Consensus 442 ~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (495)
+++.++. +|..|+|++.. .++.++.++..+++++.+|+++..+++
T Consensus 409 ~~l~~~~-~g~~Gvw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (455)
T COG0534 409 YLLGFFF-LGLAGVWIGFP-LSLILRAILLLLRLRRGRWRRKAVAAA 453 (455)
T ss_pred HHHhhhc-ccchHHHHHHH-HHHHHHHHHHHHHHHHhhhhhhhhhcc
Confidence 9999444 99999999999 999999999999999999988765543
No 2
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=1.2e-52 Score=420.22 Aligned_cols=430 Identities=15% Similarity=0.188 Sum_probs=397.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcchHH
Q 011035 50 ESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYMLG 129 (495)
Q Consensus 50 ~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~~~~~~~~~~ 129 (495)
..|+++++++|.++++++..+...+|+.+++++|++++++++++.++..+ ...+..|++.+.+++++|++|++|+++++
T Consensus 27 ~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~-~~~~~~gl~~g~~~lvsq~~Ga~~~~~~~ 105 (478)
T PRK10189 27 FWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMV-IMAFFAAIDLGTTVVVAFSLGKRDRRRAR 105 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 58999999999999999999999999999999999999999999999888 88899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcC--CCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHccchhHHHHH
Q 011035 130 VYMQRSWIVLFICCVLLLPL-YVFASPVLKLLG--QPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWV 206 (495)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~--~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 206 (495)
+..++++.+++.++++.+++ +.+.++++.++. .++++.+.+..|+++..++.|+..+...+.+++|+.||++.++..
T Consensus 106 ~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~i 185 (478)
T PRK10189 106 AAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPLLI 185 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhHHH
Confidence 99999999999998888665 678889998884 689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhc----CCccchHHHHHHHHHHHHHHHHHHHHhcC-C--cCCccCC-CChHhHhhHHHHHHHH
Q 011035 207 SLASLLVHLLVTWLFVYKM----QLGLIGTAITLSFSWWVLIFGMFGYVACG-G--CPRTWTG-FSMEAFSDLWEFVKLS 278 (495)
Q Consensus 207 ~~~~~~~~i~~~~~li~~~----~~g~~g~a~a~~i~~~~~~~~~~~~~~~~-~--~~~~~~~-~~~~~~~~~~~~~~~~ 278 (495)
+++..++|+++++++++.. ++|+.|+++|+.+++.+..++..+++.++ + .+.++++ +.+.+++.+|++++.|
T Consensus 186 ~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iG 265 (478)
T PRK10189 186 NGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRISLKSYFKPLNFAIIWEVMGIG 265 (478)
T ss_pred HHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeeccccccCCHHHHHHHHHHh
Confidence 9999999999999999853 78999999999999999988877666543 1 1222211 1223567899999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHH
Q 011035 279 VASGVMLCLENWYYRVLILMTGNLQNAKIAVDALSICMSINGWELMIPLSFFAGTGVRVSNELGAGNGKGARFATIVSVV 358 (495)
Q Consensus 279 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~i~~~~~~~~~~l~~a~~~~i~~~~g~~~~~~~~~~~~~~~~ 358 (495)
+|.++..........+.+.+++++| +.++|+|+++.++.++.+++..|++++..|.+++++|+||.+++|+..+.+.+
T Consensus 266 ~P~~~~~~~~~~~~~~~~~~~~~~G--~~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lvg~~~Ga~~~~~a~~~~~~~~~ 343 (478)
T PRK10189 266 IPASIESVLFNGGKLLTQMFVAGMG--TSVIAGNFIAFSIAALINLPGNALGSASTIITGTRLGKGQIAQAERQLRHVFW 343 (478)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999999998888888899999 45899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhcCCcchhHHHHHHHHHHhhh
Q 011035 359 TSIAIGVFFFILILIFHNELALIFSSSEAILQVVSKMSILLAFTILLNSVQPVLSGVAVGSGWQSIVAYINLGCYYLIGV 438 (495)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~i 438 (495)
+++.+++.++++++++++++.++|++|+|+.+.+..++++.++..++++++.+..+.++|.||++.++++++.+.|++.+
T Consensus 344 ~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~~i~~~~~~~v~i 423 (478)
T PRK10189 344 LSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAMWVSMLGMWGCRV 423 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHhccChHHH
Q 011035 439 PLGILLGWVFHQGVMGIWAGMIFGGTAVQTLILAIITMRCDWDRE 483 (495)
Q Consensus 439 ~l~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (495)
|+.+++.+..++|+.|+|++.. +++.+..++..+++++.+|++.
T Consensus 424 p~~~ll~~~~~~g~~Gvw~~~~-~~~~~~~~~~~~r~~~~~W~~~ 467 (478)
T PRK10189 424 VAGYILGIMLGFGVVGVWMGMF-LDWAVRGVLFYWRMVSGRWLWK 467 (478)
T ss_pred HHHHHHHHHhCCCHHHHHHHHH-HHHHHHHHHHHHHHHcCccccC
Confidence 9999998777899999999999 9999999999999999999883
No 3
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=5.9e-51 Score=408.12 Aligned_cols=427 Identities=21% Similarity=0.273 Sum_probs=389.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcch
Q 011035 48 WIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYM 127 (495)
Q Consensus 48 ~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~~~~~~~~ 127 (495)
++..|+++++++|.+++++...+.+.+|+.+++|+|++++++++++.++..+ ...+..|++.+..++++|++|++|+++
T Consensus 6 ~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~-~~~~~~gl~~~~~~i~aq~~Ga~~~~~ 84 (464)
T PRK00187 6 TTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSF-VSIFCVGVIAAVGTLVAIRHGAGDIEG 84 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCChhh
Confidence 3578999999999999999999999999999999999999999999999988 778899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHccchhHHHHHH
Q 011035 128 LGVYMQRSWIVLFICCVLLLPLYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVS 207 (495)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 207 (495)
+++.+++++.+.+.++++..++..+.++++..++.++|+.+.+..|+++..++.|+..+....++++|+.||++.+++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~ 164 (464)
T PRK00187 85 ATRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMVIS 164 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 99999999999999888876665577899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhc----CCccchHHHHHHHHHHHHHHHHHHHHhcCCc--CCcc-CCCChHhHhhHHHHHHHHhH
Q 011035 208 LASLLVHLLVTWLFVYKM----QLGLIGTAITLSFSWWVLIFGMFGYVACGGC--PRTW-TGFSMEAFSDLWEFVKLSVA 280 (495)
Q Consensus 208 ~~~~~~~i~~~~~li~~~----~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~p 280 (495)
+++.++|++++++|++.. ++|+.|+++|+.+++.+..+...+++++++. +.+. .++.+.+++..|++++.++|
T Consensus 165 ~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~lg~P 244 (464)
T PRK00187 165 LAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRKGLSRPSRAALRELWRLGLP 244 (464)
T ss_pred HHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhccccCCCHHHHHHHHHhhhh
Confidence 999999999999999753 4899999999999998888777666665421 1111 11223455679999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHH
Q 011035 281 SGVMLCLENWYYRVLILMTGNLQNAKIAVDALSICMSINGWELMIPLSFFAGTGVRVSNELGAGNGKGARFATIVSVVTS 360 (495)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~i~~~~~~~~~~l~~a~~~~i~~~~g~~~~~~~~~~~~~~~~~~ 360 (495)
.++++..+...+.+++.+++++| +.+++++++++++..+.+++..+++.+..+.++|++|+||++++++..+.++.++
T Consensus 245 ~~~~~~~~~~~~~i~~~~i~~~G--~~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~Ga~~~~~~~~~~~~~l~~~ 322 (464)
T PRK00187 245 IGGTYAVEVGLFTFAALCMGALG--STQLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHYGAGRLLEARRAGRVGIGFG 322 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 4589999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcCC--cH---HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhcCCcchhHHHHHHHHHH
Q 011035 361 IAIGVFFFILILIFHNELALIFSS--SE---AILQVVSKMSILLAFTILLNSVQPVLSGVAVGSGWQSIVAYINLGCYYL 435 (495)
Q Consensus 361 ~~~~~~~~~~~~~~~~~i~~l~~~--~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 435 (495)
+.++++.++++.++++++.++|++ |+ |+.+.+..++++.+++.++++++.+..+++++.||++.+++.++++.|+
T Consensus 323 ~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~~~~~~~~~~~~~~ 402 (464)
T PRK00187 323 AVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDARTTFLIGLACYWL 402 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCccHHHHHHHHHHHHH
Confidence 999999999999999999999974 44 6788999999999999999999999999999999999999999999899
Q ss_pred hhhHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHhcc
Q 011035 436 IGVPLGILLGWVFHQGVMGIWAGMIFGGTAVQTLILAIITMRC 478 (495)
Q Consensus 436 i~i~l~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~ 478 (495)
+++|+.+++.+.+++|+.|+|++.. +++.+..+....+++.+
T Consensus 403 ~~ipl~~ll~~~~~~g~~Gvw~~~~-i~~~~~~~~~~~~~~~~ 444 (464)
T PRK00187 403 VGAPLAWLLAFTLGWGAVGVWWGLA-LGLACAAVALTLAFEWK 444 (464)
T ss_pred HHHHHHHHHHhccCCCceeeHHHHH-HHHHHHHHHHHHHHHHH
Confidence 9999999999877899999999999 99999988776666443
No 4
>PRK01766 multidrug efflux protein; Reviewed
Probab=100.00 E-value=7.1e-49 Score=394.61 Aligned_cols=434 Identities=21% Similarity=0.394 Sum_probs=397.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCC
Q 011035 45 RRFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKK 124 (495)
Q Consensus 45 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~~~~~ 124 (495)
++.++..|++++.++|.+++++...+...+|+.+++++|++++++++++.++..+ ...+..|++.+..+.++|++|++|
T Consensus 5 ~~~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~-~~~~~~g~~~a~~~~vs~~~g~~~ 83 (456)
T PRK01766 5 QKYKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLP-VILFGHGLLLALTPIVAQLNGAGR 83 (456)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3456789999999999999999999999999999999999999999999998776 677889999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHccchhHH
Q 011035 125 YYMLGVYMQRSWIVLFICCVLLLPL-YVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVI 203 (495)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 203 (495)
+++.++..++++.+.+.+++++.++ +.+.++++.+++.++++.+.+..|+++..++.++..+...+.+++++.|+++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 163 (456)
T PRK01766 84 RERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPT 163 (456)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHH
Confidence 9999999999999999999887665 677788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhh----cCCccchHHHHHHHHHHHHHHHHHHHHhcCCcCC---ccCCCChHhHhhHHHHHH
Q 011035 204 AWVSLASLLVHLLVTWLFVYK----MQLGLIGTAITLSFSWWVLIFGMFGYVACGGCPR---TWTGFSMEAFSDLWEFVK 276 (495)
Q Consensus 204 ~~~~~~~~~~~i~~~~~li~~----~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 276 (495)
++.++++.++|+++++++++. .++|+.|+++++.+++.+..++..++.++++... .+.++.+.+++..|++++
T Consensus 164 ~~~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~ 243 (456)
T PRK01766 164 MVIGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLLK 243 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHHHHHHHHH
Confidence 999999999999999999864 2579999999999999999998888876552211 112222345567999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHH
Q 011035 277 LSVASGVMLCLENWYYRVLILMTGNLQNAKIAVDALSICMSINGWELMIPLSFFAGTGVRVSNELGAGNGKGARFATIVS 356 (495)
Q Consensus 277 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~i~~~~~~~~~~l~~a~~~~i~~~~g~~~~~~~~~~~~~~ 356 (495)
.++|.+++...+...+.+++.+++++| +.++++++++.++.++.++++.+++.+..+.+++++|+||++++++..+.+
T Consensus 244 l~~P~~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~~Ga~~~~~~~~~~~~~ 321 (456)
T PRK01766 244 LGLPIGLAIFFEVSLFAVVTLLVSPLG--TVTVAAHQIALNFSSLLFMLPLSLAMALTIRVGFELGAGRTLDARQYAYIG 321 (456)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 999999999999999999999999998 457899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhcCCcchhHHHHHHHHHHh
Q 011035 357 VVTSIAIGVFFFILILIFHNELALIFSSSEAILQVVSKMSILLAFTILLNSVQPVLSGVAVGSGWQSIVAYINLGCYYLI 436 (495)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i 436 (495)
+.+++.++++.++++..+++++.++|++|+++.+.+..++++..+..++++++.+..+++++.||++.+++.++++.|++
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~ 401 (456)
T PRK01766 322 LAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFFITFIAYWVL 401 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred hhHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHhccChHH
Q 011035 437 GVPLGILLGWVFHQGVMGIWAGMIFGGTAVQTLILAIITMRCDWDR 482 (495)
Q Consensus 437 ~i~l~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 482 (495)
++|+.+++.+.+++|+.|+|+++. +++.+..++..+++++.+|+.
T Consensus 402 ~i~~~~~l~~~~~~G~~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 446 (456)
T PRK01766 402 GLPLGYILALTDPMGPFGFWIGLI-IGLTAAAILLLLRLRKLQRQP 446 (456)
T ss_pred HHHHHHHHHhccCCCceehHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 999999988777899999999999 999999998888887766554
No 5
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=4.2e-49 Score=394.24 Aligned_cols=426 Identities=18% Similarity=0.206 Sum_probs=389.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcch
Q 011035 49 IESKKLWHIVGPTIFSRMASYSMFVITQAFAGHL-GDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYM 127 (495)
Q Consensus 49 ~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~l-g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~~~~~~~~ 127 (495)
+..|+++++++|.++++++..+.+.+|+.+++++ |++++++++++.++..+ ...+..+++.+.++.++|++|+||+|+
T Consensus 9 ~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~-~~~~~~~~~~g~~~lvsq~~Ga~~~~~ 87 (453)
T PRK09575 9 SIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGI-ILGIGLMVGMGTGSLLSIKRGEGDLEK 87 (453)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH-HHHHHHHHhccHHHHHHHHhcCCCHHH
Confidence 4778999999999999999999999999999995 99999999999999988 777889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHccchhHHHHH
Q 011035 128 LGVYMQRSWIVLFICCVLLLPL-YVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWV 206 (495)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 206 (495)
.++..++++.++++++++..++ +.+.++++.+++.+++..+.+..|+++..++.++..+.....+.+|+.|+++.+++.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~ 167 (453)
T PRK09575 88 AKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATGL 167 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHH
Confidence 9999999999999999888665 788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhcCCcCCccCC-CChHhHhhHHHHHHHHhHHHHHH
Q 011035 207 SLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACGGCPRTWTG-FSMEAFSDLWEFVKLSVASGVML 285 (495)
Q Consensus 207 ~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~ 285 (495)
++.+.++|+++++++++.+++|+.|+++|+.+++.+.+++..+++++++.+.+++. ..+.+++..|++++.|+|.+++.
T Consensus 168 ~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~~~ 247 (453)
T PRK09575 168 MVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLKELRFNWSLAPKIVLLGSSSFFMY 247 (453)
T ss_pred HHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeeccCCcCHHHHHHHHHhChhHHHHH
Confidence 99999999999999999888999999999999999999988887766533322211 11234567899999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHH
Q 011035 286 CLENWYYRVLILMTGNLQNAKIAVDALSICMSINGWELMIPLSFFAGTGVRVSNELGAGNGKGARFATIVSVVTSIAIGV 365 (495)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~i~~~~~~~~~~l~~a~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 365 (495)
....+...+.+.+++++|+. .++|+++++.++..+.+++..+++.+..|.+++++|+||+|++++..+.++.+++..++
T Consensus 248 ~~~~~~~~~~~~~~~~~g~~-~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~~~~~~~~~~~~l~l~~~~~~ 326 (453)
T PRK09575 248 LYGSFVVALHNRLFMEYGSA-LTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQYDNIKKLLKLAMKVTVLAGI 326 (453)
T ss_pred HHHHHHHHHHHHHHHHhCch-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998853 47899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhhcCC-cHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhcCCcchhHHHHHHHHHHhhhHHHHHH
Q 011035 366 FFFILILIFHNELALIFSS-SEAILQVVSKMSILLAFTILLNSVQPVLSGVAVGSGWQSIVAYINLGCYYLIGVPLGILL 444 (495)
Q Consensus 366 ~~~~~~~~~~~~i~~l~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~i~l~~~l 444 (495)
+.++++..+++++.++|+. |+|+.+.+..++++.+++.++++++.+..+.+++.||++.++..++.. +++++|+.+++
T Consensus 327 ~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~v~ip~~~ll 405 (453)
T PRK09575 327 AWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKALFISIGN-MLIQLPFLFIL 405 (453)
T ss_pred HHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHh-HHHHHHHHHHH
Confidence 9999999999999999995 789999999999999999999999999999999999999999999887 68899999998
Q ss_pred HHHhccCcchHHHHHHHHHHHHHHHHHHHHHhccChH
Q 011035 445 GWVFHQGVMGIWAGMIFGGTAVQTLILAIITMRCDWD 481 (495)
Q Consensus 445 ~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~ 481 (495)
. +.+|+.|+|+++. +++.+..++....+++ +|+
T Consensus 406 ~--~~~G~~Gvw~a~~-~~~~~~~~~~~~~~~~-~~~ 438 (453)
T PRK09575 406 P--KWLGVDGVWLAMP-LSNIALSLVVAPMLWR-DVK 438 (453)
T ss_pred H--HHHCcchHhhHHH-HHHHHHHHHHHHHHHH-HHH
Confidence 7 4589999999999 9999988877766654 344
No 6
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=1.1e-48 Score=388.19 Aligned_cols=422 Identities=16% Similarity=0.163 Sum_probs=371.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcch
Q 011035 49 IESKKLWHIVGPTIFSRMASYSMFVITQAFAGHL-GDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYM 127 (495)
Q Consensus 49 ~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~l-g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~~~~~~~~ 127 (495)
+..|+++++++|.++++++..+.+.+|+.++|++ |++++++++++.++.++ ...+..+++.+..++++|++|+||+|+
T Consensus 6 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~-~~~~~~~~~~g~~~lvsq~~Ga~~~~~ 84 (441)
T PRK10367 6 SSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSF-LFMLLLFLRMSTTGLTAQAFGAKNPQA 84 (441)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 4578999999999999999999999999999998 78899999999999998 788889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHccchhHHHHH
Q 011035 128 LGVYMQRSWIVLFICCVLLLPL-YVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWV 206 (495)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 206 (495)
+++..++++.+++.++++..++ ..+.++++.+++.++++.+.+.+|+++..++.|+..+..++.+++|+.||++.++..
T Consensus 85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~~ 164 (441)
T PRK10367 85 LARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVIL 164 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHH
Confidence 9999999999999998887655 678888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhcCC-cC-CccCCCChHhHhhHHHHHHHHhHHHHH
Q 011035 207 SLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACGG-CP-RTWTGFSMEAFSDLWEFVKLSVASGVM 284 (495)
Q Consensus 207 ~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~ 284 (495)
++++.++|+++++++++.+++|+.|+++|+.+++.+.+++..+++.+++ .+ .+.+.++...++..|++++.|.|.+++
T Consensus 165 ~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~~ 244 (441)
T PRK10367 165 LVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEMLKTAWRGNFRRLLALNRDIMLR 244 (441)
T ss_pred HHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHhhhhhHHHHHHHHHhCchHHHH
Confidence 9999999999999999988899999999999999999888777776542 11 111111111124689999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHH
Q 011035 285 LCLENWYYRVLILMTGNLQNAKIAVDALSICMSINGWELMIPLSFFAGTGVRVSNELGAGNGKGARFATIVSVVTSIAIG 364 (495)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~i~~~~~~~~~~l~~a~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~ 364 (495)
...+...+.+.+.+++++| +.++|+|+++.++.++.+++..+++++..|.+++++|+||++++|+..+.+.++++.++
T Consensus 245 ~~~~~~~~~~~~~~~~~~G--~~alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~~ 322 (441)
T PRK10367 245 SLLLQLCFGAITVLGARLG--SDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQLLDVWRAACRQSGIVA 322 (441)
T ss_pred HHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 45899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhcCC---cchhHHHHHHHHHHhhhHHH
Q 011035 365 VFFFILILIFHNELALIFSSSEAILQVVSKMSILLAFTILLNSVQPVLSGVAVGSGW---QSIVAYINLGCYYLIGVPLG 441 (495)
Q Consensus 365 ~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~---~~~~~~~~~~~~~~i~i~l~ 441 (495)
..++++++++++++.++|++|+|+.+.+..++++.++..+......+..+++++.+| ++.+++.+.++.|+.
T Consensus 323 ~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~~~~~~~~~~~~~~----- 397 (441)
T PRK10367 323 LLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNSMAVAAAGFALT----- 397 (441)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHH-----
Confidence 999999999999999999999999999999999988764433345455555555554 999999998886542
Q ss_pred HHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHhccChHH
Q 011035 442 ILLGWVFHQGVMGIWAGMIFGGTAVQTLILAIITMRCDWDR 482 (495)
Q Consensus 442 ~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 482 (495)
++.. +.+|..|+|++.. +++.++.++..++++++ |++
T Consensus 398 ~~~~--~~~g~~Gvw~a~~-~~~~~~~i~~~~~~~~~-~~~ 434 (441)
T PRK10367 398 LLTL--PWLGNHGLWLALT-VFLALRGLSLAAIWRRH-WRN 434 (441)
T ss_pred HHHH--HHcCchHHHHHHH-HHHHHHHHHHHHHHHHH-Hhc
Confidence 2222 4579999999999 99999999988877664 754
No 7
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=100.00 E-value=2.6e-38 Score=310.76 Aligned_cols=444 Identities=45% Similarity=0.766 Sum_probs=425.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcch
Q 011035 48 WIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYM 127 (495)
Q Consensus 48 ~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~~~~~~~~ 127 (495)
+.+.|++++++.|+++..+.+.+...++..++||+|+.++++.+++.+..+.....+..|+..+..++++|++|+++++.
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~~~ 103 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKFTA 103 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccccch
Confidence 67889999999999999999999999999999999999999999999999988899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHccchhHHHHHH
Q 011035 128 LGVYMQRSWIVLFICCVLLLPLYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVS 207 (495)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 207 (495)
...+.+++..+....+++...++.+.++++..+++++++...+..|.++..+..+..........+++++++.....+..
T Consensus 104 lg~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~~~~ 183 (473)
T KOG1347|consen 104 LGVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLLVIG 183 (473)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhcCCcCCccCCCChHhHhhHHHHHHHHhHHHHHHHH
Q 011035 208 LASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVASGVMLCL 287 (495)
Q Consensus 208 ~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 287 (495)
.....+++++++++++..++|..|++++..+++.+.......|.........|..+..+ +++++++++.++|..++..+
T Consensus 184 ~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~~~~~w~~~s~~-~~~~~~~~~lai~s~~micl 262 (473)
T KOG1347|consen 184 LVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSGCLAAWSGFSGE-FDSWGPFFALAIPSAVMICL 262 (473)
T ss_pred HHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecCchhhhhhhhHh-hhhHHHHHHHhhcchheeHH
Confidence 99999999999999999999999999999999999999999998776666677777777 89999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHH
Q 011035 288 ENWYYRVLILMTGNLQNAKIAVDALSICMSINGWELMIPLSFFAGTGVRVSNELGAGNGKGARFATIVSVVTSIAIGVFF 367 (495)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~va~~~~~~~i~~~~~~~~~~l~~a~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (495)
+++.+.+..+..+.++++..++++.++..++....++++.+++.+...++++.+|+|+++++|...+.....++..+...
T Consensus 263 E~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p~~ar~~~~v~~~~~~~~g~~~ 342 (473)
T KOG1347|consen 263 EWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKPKRARVSAKVALQTSVAIGASL 342 (473)
T ss_pred HHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCChhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhcCCcchhHHHHHHHHHHhhhHHHHHHHHH
Q 011035 368 FILILIFHNELALIFSSSEAILQVVSKMSILLAFTILLNSVQPVLSGVAVGSGWQSIVAYINLGCYYLIGVPLGILLGWV 447 (495)
Q Consensus 368 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~i~l~~~l~~~ 447 (495)
+..+..+++.+..+|++|+++.+......++++...++++.+.+..++.++.|+++...++++.+.+++++|..+.+.+.
T Consensus 343 ~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga~vnl~~yyl~G~p~g~~l~~~ 422 (473)
T KOG1347|consen 343 GTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGAVINLVAYYLVGAPVGLYLGFF 422 (473)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceEEEeeeeeeEecCcceeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hccCcchHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHhcc
Q 011035 448 FHQGVMGIWAGMIFGGTAVQTLILAIITMRCDWDREAEKAATALRN 493 (495)
Q Consensus 448 ~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (495)
.++|..|.|.++. .+..+....+.....+.+|+++.++.+++...
T Consensus 423 ~~~g~~glw~G~~-~~~~~~~~~l~~~~~~tdW~~~~~~a~~~~~~ 467 (473)
T KOG1347|consen 423 TKFGVKGLWIGIL-LGFSVQTLVLAIVTARTDWKNQAEKAFARIIA 467 (473)
T ss_pred EecCceEEEeehH-HHHHHHHHHHHHheeeccHHHHHHHHHHHHHh
Confidence 8899999999999 99888888888888888999999998887654
No 8
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=100.00 E-value=3.1e-36 Score=307.61 Aligned_cols=413 Identities=15% Similarity=0.102 Sum_probs=347.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChHHH-HHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHhhhcCCCcchHHH
Q 011035 54 LWHIVGPTIFSRMASYSMFVITQAFAGH-LGDLEL-AAISIANTVVVAFNFGLL-LGMASALETLCGQAFGGKKYYMLGV 130 (495)
Q Consensus 54 ~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~-~~~~~~~~~~~~~~~~~~-~gl~~~~~~~is~~~~~~~~~~~~~ 130 (495)
+.|.+.-.+++++++.+.+++|.++++| +|++++ ++++.+.++...+..... .|++++..+...++.+++ |++++
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~--~~~~~ 79 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKE--KEARR 79 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh--hHHHH
Confidence 5788889999999999999999999999 799999 899999999877333333 468888777766654322 57777
Q ss_pred HHHHHHHHHHHHHH-HHHH-HHHhhHHHHHHc--CCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHccchhHHHHH
Q 011035 131 YMQRSWIVLFICCV-LLLP-LYVFASPVLKLL--GQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWV 206 (495)
Q Consensus 131 ~~~~~~~~~~~~~~-~~~~-~~~~~~~i~~~~--~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 206 (495)
.+.++.......+. +..+ .+.+.+++..++ +.+++..+.+..|+++..++.++..+....++++|+.||++.+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (502)
T TIGR01695 80 AFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFS 159 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHHH
Confidence 77776665554443 3344 467777777877 3466777889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCccchHH--HHHHHHHHHHHHHHHHHHhcCCcCCccCCCChHhHhhHHHHHHHHhHHHHH
Q 011035 207 SLASLLVHLLVTWLFVYKMQLGLIGTA--ITLSFSWWVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVASGVM 284 (495)
Q Consensus 207 ~~~~~~~~i~~~~~li~~~~~g~~g~a--~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 284 (495)
+++..+++++..+++. .++|..|++ +++++++.+..++..++.++++.+.+. +++ .+++..|++++++.|..++
T Consensus 160 ~i~~~i~~i~~~~~~~--~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~k~~l~~~~p~~~~ 235 (502)
T TIGR01695 160 PILFNIGVILSLLFFD--WNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGFLLKP-RFN-FRDPGLKRFLKLFLPTTLG 235 (502)
T ss_pred HHHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccC-cCC-CCChhHHHHHHHHHHHHHH
Confidence 9999888776544433 568999988 999999999988887776654322211 121 1345789999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHH
Q 011035 285 LCLENWYYRVLILMTGNLQNAKIAVDALSICMSINGWELM-IPLSFFAGTGVRVSNELGAGNGKGARFATIVSVVTSIAI 363 (495)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~i~~~~~~-~~~~l~~a~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~ 363 (495)
+....+...+++.+.+.++. .++++|+.++++.+++.. +..+++++..|.+++++|+||+++.++..+++.++...+
T Consensus 236 ~~~~~~~~~id~~~~~~~~~--~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (502)
T TIGR01695 236 SSASQITLLINTALASFLEI--GSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNELRDLLNQGIRLSLLL 313 (502)
T ss_pred HHHHHHHHHHHHHHHhcCCc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999988777774 478899999999998875 578999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhcCC----cHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhcCCcchhHHHHHHHHHHhhhH
Q 011035 364 GVFFFILILIFHNELALIFSS----SEAILQVVSKMSILLAFTILLNSVQPVLSGVAVGSGWQSIVAYINLGCYYLIGVP 439 (495)
Q Consensus 364 ~~~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~i~ 439 (495)
++|.++++.++++++..++.+ |++..+.+..++++++++.++.+++.+..+.+++.||++.+++.+... .+++++
T Consensus 314 ~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~-~~i~i~ 392 (502)
T TIGR01695 314 TIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRTPFINSVIS-VVLNAL 392 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCccCHHHHHHH-HHHHHH
Confidence 999999999999999999976 567788899999999999999999999999999999999999999998 588999
Q ss_pred HHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHhcc
Q 011035 440 LGILLGWVFHQGVMGIWAGMIFGGTAVQTLILAIITMRC 478 (495)
Q Consensus 440 l~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~ 478 (495)
+.+++. +.+|..|+|+++. +++.+..++..++.+|+
T Consensus 393 l~~~l~--~~~G~~G~~~a~~-i~~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 393 LSLLLI--FPLGLVGIALATS-AASMVSSVLLYLMLNRR 428 (502)
T ss_pred HHHHHH--HHHhhhHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence 999887 6789999999999 99999988887777765
No 9
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=100.00 E-value=4.3e-36 Score=305.56 Aligned_cols=414 Identities=13% Similarity=0.135 Sum_probs=347.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcchHHHHHH
Q 011035 55 WHIVGPTIFSRMASYSMFVITQAFAGH-LGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYMLGVYMQ 133 (495)
Q Consensus 55 ~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~~~~~~~~~~~~~~ 133 (495)
.+.+.|.++++++..+.+++|+.+++| +|++++|+++.+.++..++......|++.+..+.++|+.+++|+++.++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~ 81 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILK 81 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHH
Confidence 467899999999999999999999999 6999999999999999884555567999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHccchhHHHHHHHHHHH
Q 011035 134 RSWIVLFICCVLLLPL-YVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLL 212 (495)
Q Consensus 134 ~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 212 (495)
+++.+.+..+++++++ +.+.+++...+.++++. ..++++..+..++..+.....+.+|+.+|.+..+..++++.+
T Consensus 82 ~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~i 157 (488)
T TIGR02900 82 VSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQI 157 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHH
Confidence 9999999988887665 56666666666555543 246788888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh-----cCCccchHHHHHHHHHHHHHHHHHHHHhcCCc-CCc--cCCCChHhHhhHHHHHHHHhHHHHH
Q 011035 213 VHLLVTWLFVYK-----MQLGLIGTAITLSFSWWVLIFGMFGYVACGGC-PRT--WTGFSMEAFSDLWEFVKLSVASGVM 284 (495)
Q Consensus 213 ~~i~~~~~li~~-----~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~p~~~~ 284 (495)
+++.++..++.. .++|+.|+++++.+++.+..++..++.++++. +.+ +.+....+++..|+++++++|..++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~l~ 237 (488)
T TIGR02900 158 VRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLTLS 237 (488)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHHHHHHHHHHHH
Confidence 988776666542 23578888999999998888887666554321 111 1112233456889999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCC-----hh---HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHH
Q 011035 285 LCLENWYYRVLILMTGNLQN-----AK---IAVDAL-SICMSINGWELMIPLSFFAGTGVRVSNELGAGNGKGARFATIV 355 (495)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~-----~~---~~va~~-~~~~~i~~~~~~~~~~l~~a~~~~i~~~~g~~~~~~~~~~~~~ 355 (495)
++...+...+|+.++++... .. ..++.| +.+.++.+++..+..+++++..|.++++.|+||.++.++..++
T Consensus 238 ~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~p~~s~~~~~~~~~~~~~~~~~ 317 (488)
T TIGR02900 238 RFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLSTALVPDISEAMAKKNYSSIEKRINQ 317 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999988865421 01 123333 3566788888888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhcCCcchhHHHHHHHHHH
Q 011035 356 SVVTSIAIGVFFFILILIFHNELALIFSSSEAILQVVSKMSILLAFTILLNSVQPVLSGVAVGSGWQSIVAYINLGCYYL 435 (495)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 435 (495)
++++...+++|+++++.++++++..++.++++ +.++++++++..++.+++.+..+++++.||+|..++.++.+ .+
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-~i 392 (488)
T TIGR02900 318 AIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFSAPLQSILQGLGKQKVALRNSLIG-AI 392 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHH-HH
Confidence 99999999999999999999999999886543 67889999999999999999999999999999999999999 58
Q ss_pred hhhHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHhcc
Q 011035 436 IGVPLGILLGWVFHQGVMGIWAGMIFGGTAVQTLILAIITMRC 478 (495)
Q Consensus 436 i~i~l~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~ 478 (495)
+++++.+++...+.+|+.|+|+++. +++++..++..+..+|.
T Consensus 393 ~~i~l~~~l~~~~~~G~~Gaaia~~-i~~~~~~~~~~~~~~~~ 434 (488)
T TIGR02900 393 VKIILLFVLTSIPSINIYGYAITFI-ITSVLVTILNLAEIKKN 434 (488)
T ss_pred HHHHHHHHHHhccccccHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 8999988876557799999999999 99999999888888764
No 10
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=100.00 E-value=1.2e-35 Score=287.97 Aligned_cols=337 Identities=25% Similarity=0.486 Sum_probs=306.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcchHHHHHHHHHHHH
Q 011035 60 PTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYMLGVYMQRSWIVL 139 (495)
Q Consensus 60 p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~ 139 (495)
|.+++++...+...+|+.+++++|++++|+++.+.++..+ ...+..|++++..+.++++.|++|+|+.++..++.+.+.
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~-~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 79 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMF-LFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLA 79 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHH-HHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999999998887 788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHH
Q 011035 140 FICCVLLLPL-YVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLLVT 218 (495)
Q Consensus 140 ~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 218 (495)
..++++.+++ +.+.+++..+++.+++..+.+..+++++.+..++.++..+..+.+++.||++.+...++++.+++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~ 159 (342)
T TIGR00797 80 LLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILN 159 (342)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHh
Confidence 9999888765 678888888888788888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh-hcC-CccchHHHHHHHHHHHHHHHHHHHHhcC-CcCCccCCCChHhHhhHHHHHHHHhHHHHHHHHHHHHHHHH
Q 011035 219 WLFVY-KMQ-LGLIGTAITLSFSWWVLIFGMFGYVACG-GCPRTWTGFSMEAFSDLWEFVKLSVASGVMLCLENWYYRVL 295 (495)
Q Consensus 219 ~~li~-~~~-~g~~g~a~a~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 295 (495)
+++++ .++ +|+.|+++++.+++.+..++..++.+++ +.+.+++...+.+++..|++++++.|..++++...+...++
T Consensus 160 ~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~ 239 (342)
T TIGR00797 160 YILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILESLSFALL 239 (342)
T ss_pred HHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 99987 667 8899999999999999999888777653 33333222223345689999999999999999999999999
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011035 296 ILMTGNLQNAKIAVDALSICMSINGWELMIPLSFFAGTGVRVSNELGAGNGKGARFATIVSVVTSIAIGVFFFILILIFH 375 (495)
Q Consensus 296 ~~~~~~~~~~~~~va~~~~~~~i~~~~~~~~~~l~~a~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (495)
+.+++.+| +.++++|+++.++.++...++.+++.+..|.++++++++|.++.++..++++++.+.++++.++++.+++
T Consensus 240 ~~i~~~~g--~~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 317 (342)
T TIGR00797 240 ALLVARLG--SIALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGAGDPKRAKEVARVALKLSLLLGLVLAIILILFR 317 (342)
T ss_pred HHHHHHcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999987 4588999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcCCcHHHHHHHHHHHHHH
Q 011035 376 NELALIFSSSEAILQVVSKMSILL 399 (495)
Q Consensus 376 ~~i~~l~~~~~~~~~~~~~~l~~~ 399 (495)
+++.++|++|+++.+.+..++++.
T Consensus 318 ~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 318 EFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHh
Confidence 999999999999999998887764
No 11
>PRK15099 O-antigen translocase; Provisional
Probab=100.00 E-value=9.5e-34 Score=281.49 Aligned_cols=404 Identities=11% Similarity=0.015 Sum_probs=340.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcchHHHHH
Q 011035 54 LWHIVGPTIFSRMASYSMFVITQAFAGH-LGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYMLGVYM 132 (495)
Q Consensus 54 ~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~~~~~~~~~~~~~ 132 (495)
+.|.+.+...+.++..+.+++...+++| +|++++|.++..+++..++......|++++..+.++|+ ++|+++.++.+
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~~ 80 (416)
T PRK15099 3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAVV 80 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHHH
Confidence 6788889999999999999999999999 59999999999999998756666888888888889987 67888899999
Q ss_pred HHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHccchhHHHHHHHHHH
Q 011035 133 QRSWIVLFICCVLLLPL-YVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASL 211 (495)
Q Consensus 133 ~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 211 (495)
++++.+.+..+++++++ +.+.+++...+..+++ . ..++.+..+..++..+.....+.+|+.||++.++..++++.
T Consensus 81 ~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~ 156 (416)
T PRK15099 81 GTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTD-Y---QGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGS 156 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChh-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998887664 7788888887766664 2 24455666666677778889999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhcCCc-CCccCCCChHhHhhHHHHHHHHhHHHHHHHHHHH
Q 011035 212 LVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACGGC-PRTWTGFSMEAFSDLWEFVKLSVASGVMLCLENW 290 (495)
Q Consensus 212 ~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 290 (495)
++|+.+ +++.+.. .|+.|+++|+++++.+..+...++.++++. +.++.+++ .+++..|+++++|.|..+++....+
T Consensus 157 ~~~i~l-~i~~~~~-~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~k~ll~~g~p~~~~~~~~~i 233 (416)
T PRK15099 157 LIGVAA-YYLCYRL-GGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLKPS-WDNGLAGQLGKFTLMALITSVTLPV 233 (416)
T ss_pred HHHHHH-HHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhhcc-CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999887 4444432 499999999999999988777766665422 11111222 2456789999999999999999999
Q ss_pred HHHHHHHHHh-cCCChhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHH
Q 011035 291 YYRVLILMTG-NLQNAKIAVDALSICMSINGW-ELMIPLSFFAGTGVRVSNELGAGNGKGARFATIVSVVTSIAIGVFFF 368 (495)
Q Consensus 291 ~~~~~~~~~~-~~~~~~~~va~~~~~~~i~~~-~~~~~~~l~~a~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (495)
....++.+++ .+| +.++|.|+.+.++.+. ...+..+++++..|.+++. +|.++.++..++.....+.++++.+
T Consensus 234 ~~~~~~~~l~~~~g--~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (416)
T PRK15099 234 AYVMMRNLLAAHYS--WDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEKRDITREIVKALKFVLPAVAAAS 308 (416)
T ss_pred HHHHHHHHHHhcCC--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999996 766 5599999999999885 4789999999999999985 5788999999999999999999999
Q ss_pred HHHHHhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhcCCcchhHHHHHHHHHHhhhHHHHHHHHHh
Q 011035 369 ILILIFHNELALIFSSSEAILQVVSKMSILLAFTILLNSVQPVLSGVAVGSGWQSIVAYINLGCYYLIGVPLGILLGWVF 448 (495)
Q Consensus 369 ~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~i~l~~~l~~~~ 448 (495)
+++.+++++++.++.+|+ ++++.+++++++++.++...+......+.+.++++.....++.. .++++|+.+++. +
T Consensus 309 ~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~l~i~l~~~li--~ 383 (416)
T PRK15099 309 FTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYILAEVSQ-FTLLTGFAHWLI--P 383 (416)
T ss_pred HHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH--H
Confidence 999999999999999866 66688899999999999888888887777888888877777776 789999999988 8
Q ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHhc
Q 011035 449 HQGVMGIWAGMIFGGTAVQTLILAIITMR 477 (495)
Q Consensus 449 ~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 477 (495)
.+|..|++++.. +++.+..++......+
T Consensus 384 ~~G~~G~a~a~~-is~~~~~~~~~~~~~~ 411 (416)
T PRK15099 384 LHGALGAAQAYM-ATYIVYFSLCCGVFLL 411 (416)
T ss_pred HhhhHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 899999999999 9999999877766654
No 12
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=100.00 E-value=5.7e-29 Score=247.39 Aligned_cols=386 Identities=18% Similarity=0.152 Sum_probs=335.7
Q ss_pred cCh-HHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHH
Q 011035 82 LGD-LELAAISIANTVVVAFNFGLL-LGMASALETLCGQAFGGKKYYMLGVYMQRSWIVLFICCVLLLPL-YVFASPVLK 158 (495)
Q Consensus 82 lg~-~~~~~~~~~~~~~~~~~~~~~-~gl~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~ 158 (495)
+|. ++..+|..+.++..++...+. .+++++..|..++.. ++++++.++..+....+....+++++++ ++++++++.
T Consensus 5 fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~ 83 (451)
T PF03023_consen 5 FGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVR 83 (451)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554 466789999999998544454 568999999999998 7888999999998888877777777655 788888888
Q ss_pred Hc--CCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHhhcCCc---cchHH
Q 011035 159 LL--GQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLLVTWLFVYKMQLG---LIGTA 233 (495)
Q Consensus 159 ~~--~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g---~~g~a 233 (495)
.+ +.+++..+.+.+++++..+..++.++..++.+++++++|...+....++.++..++..+++... .| +.+.+
T Consensus 84 ~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~~~--~~~~~i~~la 161 (451)
T PF03023_consen 84 LLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLSNS--WGQENIYALA 161 (451)
T ss_pred HHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHh--cCchHHHHHH
Confidence 77 3467888999999999999999999999999999999999999999999887766654444433 56 88999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcCCccCCCChHhHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHH
Q 011035 234 ITLSFSWWVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVASGVMLCLENWYYRVLILMTGNLQNAKIAVDALS 313 (495)
Q Consensus 234 ~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~ 313 (495)
+|..++..+..++.....+|...+.+. .++.. .+..|++++...|..+.....+++..+++.+.+.++++ ++++++
T Consensus 162 ~g~~~g~~~~~l~~l~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G--~vs~l~ 237 (451)
T PF03023_consen 162 WGVLIGAIIQFLIQLPYLRRFGFRFRP-KFDWR-DPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEG--SVSALN 237 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCcccc-cCCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc--HHHHHH
Confidence 999999999999988888776444322 12222 24688999999999999999999999999999999965 688999
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcC----CcHHH
Q 011035 314 ICMSINGWEL-MIPLSFFAGTGVRVSNELGAGNGKGARFATIVSVVTSIAIGVFFFILILIFHNELALIFS----SSEAI 388 (495)
Q Consensus 314 ~~~~i~~~~~-~~~~~l~~a~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~----~~~~~ 388 (495)
.++++.+++. .+..+++++..|.+++...++|.++.++..++.++..+.+.+|.++++..++++++++.. -|.+.
T Consensus 238 YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~ 317 (451)
T PF03023_consen 238 YAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAED 317 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHH
Confidence 9999999988 557899999999999999999999999999999999999999999999999999999874 25666
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHhhhcCCcchhHHHHHHHHHHhhhHHHHHHHHHhccCcchHHHHHHHHHHHHHH
Q 011035 389 LQVVSKMSILLAFTILLNSVQPVLSGVAVGSGWQSIVAYINLGCYYLIGVPLGILLGWVFHQGVMGIWAGMIFGGTAVQT 468 (495)
Q Consensus 389 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~i~l~~~l~~~~~~g~~g~~~a~~~~~~~~~~ 468 (495)
.+....++.+++++.++.+++.++...+++.||+|.+++.+++. .++++.+.+++. +.+|..|+++++. ++..+..
T Consensus 318 ~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~~~~~~~~-~~lni~l~~~l~--~~~g~~Glala~s-l~~~i~~ 393 (451)
T PF03023_consen 318 TQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTPVRISVIS-VVLNIILSILLV--PFFGVAGLALATS-LSAIISA 393 (451)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhHHHHHHHH-HHHHHHHHHHHH--HHHHHHHHHHHHH-HHHHHHH
Confidence 88899999999999999999999999999999999999999999 689999998887 8899999999999 9999999
Q ss_pred HHHHHHHhcc
Q 011035 469 LILAIITMRC 478 (495)
Q Consensus 469 ~~~~~~~~~~ 478 (495)
++.+..++|+
T Consensus 394 ~~l~~~l~r~ 403 (451)
T PF03023_consen 394 LLLYILLRRR 403 (451)
T ss_pred HHHHHHHHHH
Confidence 9988888876
No 13
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.98 E-value=6.1e-27 Score=228.39 Aligned_cols=419 Identities=11% Similarity=0.055 Sum_probs=350.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCh-HHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHhhhcCCCcchH
Q 011035 52 KKLWHIVGPTIFSRMASYSMFVITQAFAGH-LGD-LELAAISIANTVVVAFNFGLL-LGMASALETLCGQAFGGKKYYML 128 (495)
Q Consensus 52 ~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~-~~~~~~~~~~~~~~~~~~~~~-~gl~~~~~~~is~~~~~~~~~~~ 128 (495)
..+++.+.-....++++.+.+++-..+++. +|. ..-.++.++..+.+++--.+. .+++++..|...++..+++.|+.
T Consensus 7 ~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~~ 86 (518)
T COG0728 7 MSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEAA 86 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhHH
Confidence 457788888889999999999999999999 587 566799999999998544444 34689999999999887777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHc-CCC--HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHccchhHHH
Q 011035 129 GVYMQRSWIVLFICCVLLLPL-YVFASPVLKLL-GQP--DDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIA 204 (495)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~-~~~--~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 204 (495)
++..+....+...+.+..+++ .++.+.++... +.. ++....+....+++.+..++.++.....+.+++.++...+.
T Consensus 87 ~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~~a 166 (518)
T COG0728 87 RFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFIPA 166 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeechhh
Confidence 777776665555555555554 56666676344 332 33333577888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhcCCcCCccCCCChHhHhhHHHHHHHHhHHHHH
Q 011035 205 WVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVASGVM 284 (495)
Q Consensus 205 ~~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 284 (495)
+..+..++.-+.....+.........+.++|..++.+.+.++.+..++|.+...+++ +..++ +.+|++.+...|..+.
T Consensus 167 ~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~-~~~~~-~~lk~~~~~~~p~~l~ 244 (518)
T COG0728 167 FAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPR-FGFKD-PGLKRFLKLMLPALLG 244 (518)
T ss_pred hhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCC-CCCCc-hhHHHHHHHHHHHHHH
Confidence 999998888775555555433224778999999999999999999998874333222 22221 5789999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHH
Q 011035 285 LCLENWYYRVLILMTGNLQNAKIAVDALSICMSINGWEL-MIPLSFFAGTGVRVSNELGAGNGKGARFATIVSVVTSIAI 363 (495)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~i~~~~~-~~~~~l~~a~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~ 363 (495)
....+++..+++.+.+.+.++ +++.+..+.++.+++. .+..+++++..|.+|++..++|.++.++..+.+++.++++
T Consensus 245 ~sisQi~lli~~~iAS~l~~G--sis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~~~~l~~~i~l~lll 322 (518)
T COG0728 245 VSISQINLLIDTAIASFLAEG--SVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEFLKLLDWGLRLTLLL 322 (518)
T ss_pred HHHHHHHHHHHHHHHHhhccc--cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHH
Confidence 999999999999999999865 6779999999999999 7789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhcCC----cHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhcCCcchhHHHHHHHHHHhhhH
Q 011035 364 GVFFFILILIFHNELALIFSS----SEAILQVVSKMSILLAFTILLNSVQPVLSGVAVGSGWQSIVAYINLGCYYLIGVP 439 (495)
Q Consensus 364 ~~~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~i~ 439 (495)
++|.++++..++++++++... +++........+..+.++.++..+..++...+++.+|+|.++++.++. .++++.
T Consensus 323 ~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP~~i~ii~-~~~n~~ 401 (518)
T COG0728 323 TLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTPMKIAIIS-LVVNIL 401 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcChHHHHHH-HHHHHH
Confidence 999999999999999998732 455577889999999999999999999999999999999999999999 799999
Q ss_pred HHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHhcc
Q 011035 440 LGILLGWVFHQGVMGIWAGMIFGGTAVQTLILAIITMRC 478 (495)
Q Consensus 440 l~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~ 478 (495)
+++.+. +.+|..|++.+.. ++..+++.+.++..+|+
T Consensus 402 l~~~l~--~~~~~~giala~s-~a~~~~~~ll~~~l~k~ 437 (518)
T COG0728 402 LNLLLI--PPLGHVGLALATS-LAAWVNALLLYYLLRKR 437 (518)
T ss_pred HHHHHH--hhccchHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence 997766 7899999999999 98888888888887776
No 14
>PRK10459 colanic acid exporter; Provisional
Probab=99.97 E-value=2.3e-27 Score=241.25 Aligned_cols=398 Identities=9% Similarity=0.084 Sum_probs=321.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcchHH
Q 011035 51 SKKLWHIVGPTIFSRMASYSMFVITQAFAGH-LGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYMLG 129 (495)
Q Consensus 51 ~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~~~~~~~~~~ 129 (495)
.++..+.+.+..+++....+.+++...+++| +||+++|.++.+..+..++......|++.+. .|. +|. .+
T Consensus 4 ~~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~ai----i~~---~~~--~~ 74 (492)
T PRK10459 4 REKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASI----IQR---QDI--SH 74 (492)
T ss_pred HHHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHH----Hhc---ccC--CH
Confidence 3668888999999999999999999999999 6999999999999999986777788888874 221 121 12
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHccchhHHHHHHH
Q 011035 130 VYMQRSWIVLFICCVLLLPL-YVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSL 208 (495)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 208 (495)
+..+....+....++++.++ +.+.+++...++ +++. ...+++..+..++..+.......+++.++.+.....+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~ 149 (492)
T PRK10459 75 LQLSTLYWLNVGLGIVVFVLVFLLSPLIADFYH-NPEL----APLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEI 149 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-Chhh----HHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHH
Confidence 44555666666666666554 444444444443 4432 34567777778888888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhcCCcCCccCCCChHhHhhHHHHHHHHhHHHHHHHHH
Q 011035 209 ASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVASGVMLCLE 288 (495)
Q Consensus 209 ~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 288 (495)
...+...++...+.. .++|..+.+++..+++.+..++..+.. +++.++++ ++ +++..|++++++.|...+++..
T Consensus 150 ~~~i~~~~~~i~~~~-~~~g~~~l~~~~~~~~~~~~l~~~~~~-~~~~~~~~-~~---~~~~~k~ll~~~~~~~~~~~~~ 223 (492)
T PRK10459 150 SAVVAGFTFAVVSAF-FWPGALAAILGYLVNSSVRTLLFGYFG-RKIYRPAL-HF---SLASVKPNLSFGAWQTAERIIN 223 (492)
T ss_pred HHHHHHHHHHHHHHH-HCCcHHHHHHHHHHHHHHHHHHHHHHh-cccCCccc-ee---cHHHHHHHHhhhHHHHHHHHHH
Confidence 888888777766665 478999999999999887766554333 22222221 12 2356899999999999999999
Q ss_pred HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHH
Q 011035 289 NWYYRVLILMTGNLQNAKIAVDALSICMSINGWELM-IPLSFFAGTGVRVSNELGAGNGKGARFATIVSVVTSIAIGVFF 367 (495)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~va~~~~~~~i~~~~~~-~~~~l~~a~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (495)
.+...+|+.+++.+.+ +.++|.|+.+.++.+.+.. +...++++..|.+++. ++|.++.++.+++..++...+++|+
T Consensus 224 ~~~~~~d~~~lg~~lg-~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~~~~~~~~~~~~~~~~~~~p~ 300 (492)
T PRK10459 224 YLNTNIDTILIGRILG-AEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTEKLRVGFLKLLSVLGIINFPL 300 (492)
T ss_pred HHHhcCchhhhhHhhc-hHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888765 4589999999999988654 4556788999999885 5788999999999999999999999
Q ss_pred HHHHHHhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhcCCcchhHHHHHHHHHHhhhHHHHHHHHH
Q 011035 368 FILILIFHNELALIFSSSEAILQVVSKMSILLAFTILLNSVQPVLSGVAVGSGWQSIVAYINLGCYYLIGVPLGILLGWV 447 (495)
Q Consensus 368 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~i~l~~~l~~~ 447 (495)
++++.+++++++.++.+++ ++.+...++++++..++..+......++++.||+|..+..+++. .++.+|..+.+.
T Consensus 301 ~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~-~~~~i~~~~~~~-- 375 (492)
T PRK10459 301 LLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVFK-TFLFIPAIVIGG-- 375 (492)
T ss_pred HHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHH-HHHHHHHHHHHH--
Confidence 9999999999999988765 77889999999999999999999999999999999999999888 578888877776
Q ss_pred hccCcchHHHHHHHHHHHHHHHHHHHHHhc
Q 011035 448 FHQGVMGIWAGMIFGGTAVQTLILAIITMR 477 (495)
Q Consensus 448 ~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 477 (495)
+.+|..|++++.. +++.+...+..+..+|
T Consensus 376 ~~~G~~g~a~a~~-i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 376 QLAGLIGVALGFL-LVQIINTILSYFLMIK 404 (492)
T ss_pred hhccHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 6789999999999 9999988887776644
No 15
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.96 E-value=7.7e-25 Score=222.21 Aligned_cols=391 Identities=15% Similarity=0.126 Sum_probs=306.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcchH
Q 011035 50 ESKKLWHIVGPTIFSRMASYSMFVITQAFAGH-LGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYML 128 (495)
Q Consensus 50 ~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~~~~~~~~~ 128 (495)
..+++.+.+.....+++...+.+++....++| +|++++|.++.+.++.+++......|++.+....++++.+++++...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~~ 83 (480)
T COG2244 4 LKKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLLL 83 (480)
T ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHHH
Confidence 45778899999999999999999999999999 69999999999999999977777899999988888887655554444
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHccchhHHHHHH
Q 011035 129 GVY-MQRSWIVLFICCVLLLPLYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVS 207 (495)
Q Consensus 129 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 207 (495)
... ...........+++.........+. .+.....+.+..+..+.........+.+|+.++.+......
T Consensus 84 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (480)
T COG2244 84 ILLSVLLLLLLALILLLLLLLIAYLLAPI----------DPVLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALSI 153 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc----------ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHH
Confidence 444 4444433333333332222222211 11233456778888999999999999999999999999884
Q ss_pred HHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhcCCcCCccCCCChHhHhhHHHHHHHHhHHHHHHHH
Q 011035 208 LASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVASGVMLCL 287 (495)
Q Consensus 208 ~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 287 (495)
+.. ..-+...+.+.. .......++..++..........+..+++....+...+. .++..|+.+++++|....+..
T Consensus 154 ~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~p~~~~~~~ 228 (480)
T COG2244 154 VSS-IFLLAAVFALLF---AALGLAVWALVLGAVVSLLVLLILLGKKKRGLKRPILRF-SLALLKELLRFGLPLLLSSLL 228 (480)
T ss_pred HHH-HHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCc-hhHHHHHHHHHhhHHHHHHHH
Confidence 444 121222222221 234455555566655555555555432211111111221 356899999999999999999
Q ss_pred HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHH
Q 011035 288 ENWYYRVLILMTGNLQNAKIAVDALSICMSINGWELMIPLSFFAGTGVRVSNELGAGNGKGARFATIVSVVTSIAIGVFF 367 (495)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~va~~~~~~~i~~~~~~~~~~l~~a~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (495)
..+....|+.+++++.+ +.++|.|+.++++......+..+++.+..|.+++...+++.++.++..+++.++..++++|.
T Consensus 229 ~~l~~~~D~~~i~~~l~-~~~vG~Y~~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 307 (480)
T COG2244 229 NFLFTNIDTLLLGLFLG-PAQVGIYSAAQRLVSLLLIVASALNRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISIPA 307 (480)
T ss_pred HHHHHHHHHHHHHHHhh-hhHheecccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998876 45899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhcCCcchhHHHHHHHHHHhhhHHHHHHHHH
Q 011035 368 FILILIFHNELALIFSSSEAILQVVSKMSILLAFTILLNSVQPVLSGVAVGSGWQSIVAYINLGCYYLIGVPLGILLGWV 447 (495)
Q Consensus 368 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~i~l~~~l~~~ 447 (495)
.+++.++++++..++.+++ +..+...++++++..++.+........+++.|+++..++.+.+. .+.++.+.++++
T Consensus 308 ~~~l~~~~~~~i~~~fg~~--~~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-~i~~~~l~~~li-- 382 (480)
T COG2244 308 LLGLLLLAPPIITLLFGEK--YASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLISLIS-ALLNLILNLLLI-- 382 (480)
T ss_pred HHHHHHHHhhhheeecCCc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHH-HHHHHHHHhHHH--
Confidence 9999999999999998766 44488999999999999999999999999999999999999999 588999999888
Q ss_pred hccCcchHHHHHHHH
Q 011035 448 FHQGVMGIWAGMIFG 462 (495)
Q Consensus 448 ~~~g~~g~~~a~~~~ 462 (495)
+.+|..|+..+.. .
T Consensus 383 ~~~g~~g~~~a~~-~ 396 (480)
T COG2244 383 PRFGLIGAAIATA-S 396 (480)
T ss_pred HhhhhhhHHHHHH-H
Confidence 8889999988885 5
No 16
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.88 E-value=1.8e-20 Score=188.17 Aligned_cols=206 Identities=18% Similarity=0.120 Sum_probs=188.0
Q ss_pred hHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 011035 267 AFSDLWEFVKLSVASGVMLCLENWYYRVLILMTGNLQNAKIAVDALSICMSINGWELMIPLSFFAGTGVRVSNELGAGNG 346 (495)
Q Consensus 267 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~i~~~~~~~~~~l~~a~~~~i~~~~g~~~~ 346 (495)
+++..|++++.++|.+++++...+...+|+.+++++| +.++++++++.++..+...+..+++.+..|.++|++|+||+
T Consensus 5 ~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg--~~alAa~~i~~~i~~~~~~~~~gl~~~~~~i~aq~~Ga~~~ 82 (464)
T PRK00187 5 PTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLG--PEALAGGGLGAASYSFVSIFCVGVIAAVGTLVAIRHGAGDI 82 (464)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence 3457899999999999999999999999999999998 55899999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhcCCcchhH
Q 011035 347 KGARFATIVSVVTSIAIGVFFFILILIFHNELALIFSSSEAILQVVSKMSILLAFTILLNSVQPVLSGVAVGSGWQSIVA 426 (495)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 426 (495)
+++++..+.++.+.++++++..+.+. +.+++..+|+.|+|+.+.+.+++++..++.++..+.....+.+++.||++.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~ 161 (464)
T PRK00187 83 EGATRLAQAGLWLAWLLALVAALLLW-NLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVM 161 (464)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 99999999999999999998877765 67899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhHHHHHHHHH----hccCcchHHHHHHHHHHHHHHHHHHHHHhc
Q 011035 427 YINLGCYYLIGVPLGILLGWV----FHQGVMGIWAGMIFGGTAVQTLILAIITMR 477 (495)
Q Consensus 427 ~~~~~~~~~i~i~l~~~l~~~----~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 477 (495)
+.++++ .++++++++++++. +++|+.|+++++. +++....+...+++++
T Consensus 162 ~~~~~~-~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~-i~~~~~~~~~~~~~~~ 214 (464)
T PRK00187 162 VISLAG-AVANLLLNYALIEGWFGLPKLGLMGIGLVTA-LVSNGMALALALYIRR 214 (464)
T ss_pred HHHHHH-HHHHHHHHHHHHcCCCCCccccccchHHHHH-HHHHHHHHHHHHHHHh
Confidence 999999 68899999998753 3589999999999 9988777655555543
No 17
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.88 E-value=2.4e-20 Score=185.57 Aligned_cols=208 Identities=24% Similarity=0.282 Sum_probs=198.7
Q ss_pred HhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChh
Q 011035 268 FSDLWEFVKLSVASGVMLCLENWYYRVLILMTGNLQNAKIAVDALSICMSINGWELMIPLSFFAGTGVRVSNELGAGNGK 347 (495)
Q Consensus 268 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~i~~~~~~~~~~l~~a~~~~i~~~~g~~~~~ 347 (495)
.+..|+++++++|..+.++.......+|+.++++++ ++++++-++++++..+...+..+++.+..+.++|++|+||++
T Consensus 13 ~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~--~~alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~Ga~~~~ 90 (455)
T COG0534 13 KKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLG--AEALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIGAGDRK 90 (455)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCchH
Confidence 357899999999999999999999999999999999 568999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhcCCcchhHH
Q 011035 348 GARFATIVSVVTSIAIGVFFFILILIFHNELALIFSSSEAILQVVSKMSILLAFTILLNSVQPVLSGVAVGSGWQSIVAY 427 (495)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 427 (495)
++++..+.++.++++++++..++...+++++..++.+++|+.+.+.+|+++..++.++..+..+..+++++.||+|.+++
T Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~ 170 (455)
T COG0534 91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY 170 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence 99999999999999999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHHHHHHH-hc-cCcchHHHHHHHHHHHHHHHHHHHHHhccC
Q 011035 428 INLGCYYLIGVPLGILLGWV-FH-QGVMGIWAGMIFGGTAVQTLILAIITMRCD 479 (495)
Q Consensus 428 ~~~~~~~~i~i~l~~~l~~~-~~-~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~ 479 (495)
.++++ .+.|+.+++++++. .+ +|+.|+++|+. +++.+..++...++++++
T Consensus 171 ~~~~~-~~lNivln~llI~g~~g~lGv~GAA~AT~-ia~~~~~~~~~~~~~~~~ 222 (455)
T COG0534 171 ILLLG-NLLNIVLNYLLIFGLFGGLGVAGAALATV-IARWIGALLLLIYLLRKK 222 (455)
T ss_pred HHHHH-HHHHHHhhHHHHHhccccccchhHHHHHH-HHHHHHHHHHHHHHHhcc
Confidence 99999 69999999999977 35 99999999999 999999998888888764
No 18
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.88 E-value=2.8e-20 Score=185.07 Aligned_cols=206 Identities=15% Similarity=0.125 Sum_probs=192.3
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhh
Q 011035 269 SDLWEFVKLSVASGVMLCLENWYYRVLILMTGNLQNAKIAVDALSICMSINGWELMIPLSFFAGTGVRVSNELGAGNGKG 348 (495)
Q Consensus 269 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~i~~~~~~~~~~l~~a~~~~i~~~~g~~~~~~ 348 (495)
++.|++++.++|..++++...+...+|+.+++++++ +.++|+.+++.++.++...+..+++.+..+.++|++|+||+|+
T Consensus 6 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g-~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~~ 84 (441)
T PRK10367 6 SSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDS-PVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQA 84 (441)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 467899999999999999999999999999999854 4578999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhcCCcchhHHH
Q 011035 349 ARFATIVSVVTSIAIGVFFFILILIFHNELALIFSSSEAILQVVSKMSILLAFTILLNSVQPVLSGVAVGSGWQSIVAYI 428 (495)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 428 (495)
+++..+.++.+++++++++.+....+.+++..+++.|+|+.+.+.+|+++..++.++..+..+..+++++.||++.+++.
T Consensus 85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~~ 164 (441)
T PRK10367 85 LARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVIL 164 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHH
Confidence 99999999999999999998888888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHhc
Q 011035 429 NLGCYYLIGVPLGILLGWVFHQGVMGIWAGMIFGGTAVQTLILAIITMR 477 (495)
Q Consensus 429 ~~~~~~~i~i~l~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 477 (495)
++++ .++++++++++++..++|+.|+++++. +++.+..++..+++++
T Consensus 165 ~ii~-~~vni~l~~~lI~~~~lGv~Gaa~At~-is~~~~~i~~~~~~~~ 211 (441)
T PRK10367 165 LVVG-NILNIVLDLWLVMGLHMNVQGAALATV-IAEYATLLIGLLMVRK 211 (441)
T ss_pred HHHH-HHHHHHHHHHHHHHcCCccHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 9999 688999999999877899999999999 9999988776665554
No 19
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.88 E-value=3e-20 Score=186.57 Aligned_cols=204 Identities=18% Similarity=0.157 Sum_probs=190.4
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhh
Q 011035 269 SDLWEFVKLSVASGVMLCLENWYYRVLILMTGNLQNAKIAVDALSICMSINGWELMIPLSFFAGTGVRVSNELGAGNGKG 348 (495)
Q Consensus 269 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~i~~~~~~~~~~l~~a~~~~i~~~~g~~~~~~ 348 (495)
+..|++++.++|.+++++.......+|+.+++++| +.++|+++++.++..+.+.+..+++.+..+.++|++|+||+++
T Consensus 26 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG--~~alAA~~i~~~i~~~~~~~~~gl~~g~~~lvsq~~Ga~~~~~ 103 (478)
T PRK10189 26 LFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLG--KEAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLGKRDRRR 103 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 45899999999999999999999999999999998 5689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcC--CcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhcCCcchhH
Q 011035 349 ARFATIVSVVTSIAIGVFFFILILIFHNELALIFS--SSEAILQVVSKMSILLAFTILLNSVQPVLSGVAVGSGWQSIVA 426 (495)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 426 (495)
+++..+.++.+++.++++.+++..++++++..++. .|+|+.+.+..++++..++.++..+..+..+++++.||++.++
T Consensus 104 ~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~ 183 (478)
T PRK10189 104 ARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPL 183 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhH
Confidence 99999999999999999999999999999999995 6899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhHHHHHHHHH----hccCcchHHHHHHHHHHHHHHHHHHHHHh
Q 011035 427 YINLGCYYLIGVPLGILLGWV----FHQGVMGIWAGMIFGGTAVQTLILAIITM 476 (495)
Q Consensus 427 ~~~~~~~~~i~i~l~~~l~~~----~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 476 (495)
+.++++ +++++++.+++++. +++|+.|+|+++. +++.+..++..+.+.
T Consensus 184 ~i~~~~-~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~-is~~~~~~~~~~~~~ 235 (478)
T PRK10189 184 LINGGM-NILNIIISSILIYGLFSWQGLGFVGAGLGLT-ISRYIGAVAIIWVLM 235 (478)
T ss_pred HHHHHH-HHHHHHHhHHHHhcCCCCCccchHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 999987 78999999998864 3789999999999 999998877655544
No 20
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.87 E-value=1e-19 Score=183.28 Aligned_cols=208 Identities=15% Similarity=0.091 Sum_probs=192.7
Q ss_pred hHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 011035 267 AFSDLWEFVKLSVASGVMLCLENWYYRVLILMTGNLQNAKIAVDALSICMSINGWELMIPLSFFAGTGVRVSNELGAGNG 346 (495)
Q Consensus 267 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~i~~~~~~~~~~l~~a~~~~i~~~~g~~~~ 346 (495)
.++.+|+++++++|..++++...+...+|+.+++++| +.++++++++.++..+...+..+++.+..|.+++++|++|+
T Consensus 7 ~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g--~~~laa~~~~~~~~~~~~~~~~g~~~a~~~~vs~~~g~~~~ 84 (456)
T PRK01766 7 YKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVS--ATDLAAVAIGTSIWLPVILFGHGLLLALTPIVAQLNGAGRR 84 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence 3467999999999999999999999999999999998 45788999999998888889999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhcCCcchhH
Q 011035 347 KGARFATIVSVVTSIAIGVFFFILILIFHNELALIFSSSEAILQVVSKMSILLAFTILLNSVQPVLSGVAVGSGWQSIVA 426 (495)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 426 (495)
++.++..+.++.+++++++++++++..+++++..++..|+++.+.+..++++..++.++..+.....+.+++.||++.++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 164 (456)
T PRK01766 85 ERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTM 164 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhHHHHHHHHH----hccCcchHHHHHHHHHHHHHHHHHHHHHhcc
Q 011035 427 YINLGCYYLIGVPLGILLGWV----FHQGVMGIWAGMIFGGTAVQTLILAIITMRC 478 (495)
Q Consensus 427 ~~~~~~~~~i~i~l~~~l~~~----~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~ 478 (495)
+.+.++ .++++++.+++++. +.+|+.|+++++. +++.+..++..++++|+
T Consensus 165 ~~~~i~-~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~-is~~~~~~~~~~~~~~~ 218 (456)
T PRK01766 165 VIGFLG-LLINIPLNYIFIYGKFGFPELGGVGCGVATA-IVYWVMFLAMLIYIKRA 218 (456)
T ss_pred HHHHHH-HHHHHHHHHHHHcCCCCCcccccccHHHHHH-HHHHHHHHHHHHHHHhC
Confidence 999999 58899999888743 4689999999999 99999988877776654
No 21
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.87 E-value=6.3e-20 Score=183.92 Aligned_cols=206 Identities=15% Similarity=0.134 Sum_probs=193.3
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChh
Q 011035 269 SDLWEFVKLSVASGVMLCLENWYYRVLILMTGNL-QNAKIAVDALSICMSINGWELMIPLSFFAGTGVRVSNELGAGNGK 347 (495)
Q Consensus 269 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~va~~~~~~~i~~~~~~~~~~l~~a~~~~i~~~~g~~~~~ 347 (495)
+..|++++.++|..++++.+.+...+|+.+++++ | +.+++++++++++.++...+..+++.+..+.+++++|+||+|
T Consensus 9 ~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g--~~~laa~~~~~~~~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~ 86 (453)
T PRK09575 9 SIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVG--AEGLAGINMAWPVIGIILGIGLMVGMGTGSLLSIKRGEGDLE 86 (453)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCHH
Confidence 4678999999999999999999999999999996 6 558899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhcCCcchhHH
Q 011035 348 GARFATIVSVVTSIAIGVFFFILILIFHNELALIFSSSEAILQVVSKMSILLAFTILLNSVQPVLSGVAVGSGWQSIVAY 427 (495)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 427 (495)
+.++..+.++.++++++++.+++...+++++..+++.|+++.+.+..++++..++.++..+.....+++++.||++.++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~ 166 (453)
T PRK09575 87 KAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATG 166 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHhcc
Q 011035 428 INLGCYYLIGVPLGILLGWVFHQGVMGIWAGMIFGGTAVQTLILAIITMRC 478 (495)
Q Consensus 428 ~~~~~~~~i~i~l~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~ 478 (495)
.++.+ .++++++++++++.+++|+.|+++++. +++.+..++.+++++++
T Consensus 167 ~~~~~-~~~ni~l~~~li~~~~~Gi~Gaa~At~-is~~~~~~~~~~~~~~~ 215 (453)
T PRK09575 167 LMVIG-ALINIVLDYLFIGWLDWGLTGAAIATA-LAQLVVTVLGLGYFFSS 215 (453)
T ss_pred HHHHH-HHHHHHhhHHHHHhCCchhHHHHHHHH-HHHHHHHHHHHHHHHCC
Confidence 99999 699999999998777899999999999 99999988876665543
No 22
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.80 E-value=1.3e-16 Score=162.97 Aligned_cols=204 Identities=16% Similarity=0.130 Sum_probs=184.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcchH
Q 011035 49 IESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYML 128 (495)
Q Consensus 49 ~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~~~~~~~~~ 128 (495)
+..|++++.+.|..++++...+...+|+.+.+.+|++++++++.+.++..+....+..+++++..|.++++++++|+++.
T Consensus 220 ~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~~ 299 (502)
T TIGR01695 220 PGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNEL 299 (502)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 46789999999999999999999999998866689999999999999998744557889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCC----CHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHccchhHH
Q 011035 129 GVYMQRSWIVLFICCVLLLPL-YVFASPVLKLLGQ----PDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVI 203 (495)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 203 (495)
++..+++......++++++++ +.++++++..+.+ +++..+.+..++++.+++.++..+.......+++.||++.+
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~ 379 (502)
T TIGR01695 300 RDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRTP 379 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCccC
Confidence 999999999999999888765 7888999987765 45778889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhcC
Q 011035 204 AWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACG 254 (495)
Q Consensus 204 ~~~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~ 254 (495)
++.++...+++++++++++.. +|..|+++|+.+++.+...+..++.+|+
T Consensus 380 ~~~~~~~~~i~i~l~~~l~~~--~G~~G~~~a~~i~~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 380 FINSVISVVLNALLSLLLIFP--LGLVGIALATSAASMVSSVLLYLMLNRR 428 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999864 7999999999999999999888777664
No 23
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.79 E-value=8.8e-16 Score=143.78 Aligned_cols=270 Identities=18% Similarity=0.161 Sum_probs=205.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcchHHHHHH
Q 011035 55 WHIVGPTIFSRMASYSMFVITQAFAGH-LGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYMLGVYMQ 133 (495)
Q Consensus 55 ~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~~~~~~~~~~~~~~ 133 (495)
+|.+.....++++..+.+++...+++| +|++++|.++.+.++.+++......|++.+....+++...+ +++.+.+..
T Consensus 2 ~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~ 79 (273)
T PF01943_consen 2 LKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFS 79 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHH
Confidence 577888899999999999999999999 69999999999999999866667999999988888775432 344555555
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHH
Q 011035 134 RSWIVLFICCVLLLPLYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLV 213 (495)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 213 (495)
.........+++...+.... ..+..++ ... .+........++.........++++.++.+.....++...+.
T Consensus 80 ~~~~~~~~~~~i~~~~~~~~----~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (273)
T PF01943_consen 80 SVLFLLLIFSLIFLLILLIA----SFFGNPS-LSL---ILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSLL 151 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHcCCch-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55544444333333322221 2333332 211 112222222256778888999999999999999999999888
Q ss_pred HHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhcCCcCCccCCCChHhHhhHHHHHHHHhHHHHHHHHHHHHHH
Q 011035 214 HLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVASGVMLCLENWYYR 293 (495)
Q Consensus 214 ~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 293 (495)
..+...++... +.+..+..++..++..+...+..++.+|+. +.+ ++..+++..|++++++.|..++++...+...
T Consensus 152 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (273)
T PF01943_consen 152 SLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRKL-RPR---FSFFSKKFFKEILRFGLPLFLSSLLSWLYSQ 226 (273)
T ss_pred HHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccc---ccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777676663 445889999999999888888887777643 222 2222356899999999999999999999999
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011035 294 VLILMTGNLQNAKIAVDALSICMSINGWELMIPLSFFAGTGVRVSNE 340 (495)
Q Consensus 294 ~~~~~~~~~~~~~~~va~~~~~~~i~~~~~~~~~~l~~a~~~~i~~~ 340 (495)
.|..+++.+.+ .+++|.|+++.++......+..++.++..|.+++.
T Consensus 227 ~d~~ii~~~~g-~~~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s~l 272 (273)
T PF01943_consen 227 IDRLIIGYFLG-PEAVGIYSVAYRLASAISFLLSSISTVLFPRLSRL 272 (273)
T ss_pred hHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999877 45899999999999999999999999999999875
No 24
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.77 E-value=8e-17 Score=156.20 Aligned_cols=194 Identities=19% Similarity=0.206 Sum_probs=178.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHH
Q 011035 280 ASGVMLCLENWYYRVLILMTGNLQNAKIAVDALSICMSINGWELMIPLSFFAGTGVRVSNELGAGNGKGARFATIVSVVT 359 (495)
Q Consensus 280 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~i~~~~~~~~~~l~~a~~~~i~~~~g~~~~~~~~~~~~~~~~~ 359 (495)
|.+++++...+...+++.++++++ +.++++++.+.++..+...+..+++++..|.++++.|++|+|+.++..+....+
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~ 78 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLG--PVDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLL 78 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 678889999999999999999998 457899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhcCCcchhHHHHHHHHHHhhhH
Q 011035 360 SIAIGVFFFILILIFHNELALIFSSSEAILQVVSKMSILLAFTILLNSVQPVLSGVAVGSGWQSIVAYINLGCYYLIGVP 439 (495)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~i~ 439 (495)
...++++.++++.++++++..+++.|++..+.+..++++++++.++.++.....+++++.||.+...+.++++ .+++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~-~~~~i~ 157 (342)
T TIGR00797 79 ALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIG-NVINII 157 (342)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH-HHHHHH
Confidence 9999999999999999999999987888889999999999999999999999999999999999999999998 588899
Q ss_pred HHHHHHH-Hhc-cCcchHHHHHHHHHHHHHHHHHHHHHhc
Q 011035 440 LGILLGW-VFH-QGVMGIWAGMIFGGTAVQTLILAIITMR 477 (495)
Q Consensus 440 l~~~l~~-~~~-~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 477 (495)
+.+++.. ..+ +|+.|++++.. +++.+..++..++.+|
T Consensus 158 ~~~~li~~~~g~~g~~g~~~~~~-~~~~~~~~~~~~~~~~ 196 (342)
T TIGR00797 158 LNYILIFGKFGFLGIVGAALATV-ISYWLMFLLLLYYIKK 196 (342)
T ss_pred HhHHHHhcCccccccHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 8888774 345 67999999999 9999988887766665
No 25
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.75 E-value=2.7e-18 Score=147.40 Aligned_cols=162 Identities=23% Similarity=0.408 Sum_probs=156.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHH
Q 011035 280 ASGVMLCLENWYYRVLILMTGNLQNAKIAVDALSICMSINGWELMIPLSFFAGTGVRVSNELGAGNGKGARFATIVSVVT 359 (495)
Q Consensus 280 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~i~~~~~~~~~~l~~a~~~~i~~~~g~~~~~~~~~~~~~~~~~ 359 (495)
|.+++++.+.+.+.+++.+++++| ++++++++++.++.++...+..+++++..+.+++++|++|++++++..+.++.+
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g--~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~ 78 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLG--PEALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLL 78 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCT--TCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHhhhcccccccccceeeccccccccccccccccccccc
Confidence 888999999999999999999997 458899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhcCCcchhHHHHHHHHHHhhhH
Q 011035 360 SIAIGVFFFILILIFHNELALIFSSSEAILQVVSKMSILLAFTILLNSVQPVLSGVAVGSGWQSIVAYINLGCYYLIGVP 439 (495)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~i~ 439 (495)
...+++++++++.++++++..+|++|+++.+.+.+++++..+..++.++.....+++++.||++..++.+++..|++++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 158 (162)
T PF01554_consen 79 SLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIP 158 (162)
T ss_dssp HHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHH
T ss_pred chhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998899999
Q ss_pred HHHH
Q 011035 440 LGIL 443 (495)
Q Consensus 440 l~~~ 443 (495)
++|+
T Consensus 159 l~yl 162 (162)
T PF01554_consen 159 LAYL 162 (162)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9875
No 26
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.73 E-value=6.7e-15 Score=146.79 Aligned_cols=204 Identities=14% Similarity=0.146 Sum_probs=189.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcchH
Q 011035 49 IESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYML 128 (495)
Q Consensus 49 ~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~~~~~~~~~ 128 (495)
+..|++++...|..++....++...+|+.+.+.+++..+++++.+..+.++....+..++++...|..++...++|.++.
T Consensus 195 ~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~ 274 (451)
T PF03023_consen 195 PNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEF 274 (451)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 35788999999999999999999999999999999999999999999999977788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCC----CHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHccchhHH
Q 011035 129 GVYMQRSWIVLFICCVLLLPL-YVFASPVLKLLGQ----PDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVI 203 (495)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 203 (495)
++..++.+...+.+.++.+++ +.++++++..+.. +.+..+.....++++.+++++.++...+...+.+.+|+|.+
T Consensus 275 ~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~ 354 (451)
T PF03023_consen 275 RKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTP 354 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhH
Confidence 999999999999999999765 7899999977642 56778888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhcC
Q 011035 204 AWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACG 254 (495)
Q Consensus 204 ~~~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~ 254 (495)
++.++++.++|++++.++... +|..|.++++.++..+.+++..+.++|+
T Consensus 355 ~~~~~~~~~lni~l~~~l~~~--~g~~Glala~sl~~~i~~~~l~~~l~r~ 403 (451)
T PF03023_consen 355 VRISVISVVLNIILSILLVPF--FGVAGLALATSLSAIISALLLYILLRRR 403 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999888865 7999999999999999999998888775
No 27
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.71 E-value=1.1e-17 Score=143.63 Aligned_cols=160 Identities=25% Similarity=0.394 Sum_probs=153.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcchHHHHHHHHHHHH
Q 011035 60 PTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYMLGVYMQRSWIVL 139 (495)
Q Consensus 60 p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~ 139 (495)
|.++++++..+...+|+.+++++|++++++++++.++.++ ...+..|++.+..+.++|++|++|++++++..+.++.+.
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~-~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~ 79 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSI-LFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLS 79 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHH-HHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH-Hhhhcccccccccceeecccccccccccccccccccccc
Confidence 8899999999999999999999999999999999999999 788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHccchhHHHHHHHHHH-HHHHHH
Q 011035 140 FICCVLLLPL-YVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASL-LVHLLV 217 (495)
Q Consensus 140 ~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~~ 217 (495)
+.++++..++ +.+.+++..+++.++++.+.+..|+++..+..++..+.....+++++.||++.++..+++.. ++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l 159 (162)
T PF01554_consen 80 LIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPL 159 (162)
T ss_dssp HHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhH
Confidence 9999999876 78888899999999999999999999999999999999999999999999999999999998 999999
Q ss_pred HHH
Q 011035 218 TWL 220 (495)
Q Consensus 218 ~~~ 220 (495)
+|+
T Consensus 160 ~yl 162 (162)
T PF01554_consen 160 AYL 162 (162)
T ss_dssp HHH
T ss_pred HhC
Confidence 875
No 28
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.70 E-value=4.2e-15 Score=151.42 Aligned_cols=202 Identities=15% Similarity=0.132 Sum_probs=172.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCh---------HHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHH
Q 011035 47 FWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGH-LGD---------LELAAI-SIANTVVVAFNFGLLLGMASALETL 115 (495)
Q Consensus 47 ~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~---------~~~~~~-~~~~~~~~~~~~~~~~gl~~~~~~~ 115 (495)
.++..|++++.+.|..++++...+...+|+.++++ +++ +.+|.+ +.+.++..+ ...+..+++.+..|.
T Consensus 220 ~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~-~~~~~~~l~~~~~p~ 298 (488)
T TIGR02900 220 GKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTF-PAVITSSLSTALVPD 298 (488)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHh-HHHHHHHHHHHHHHH
Confidence 35688999999999999999999999999999987 332 123333 345566666 567789999999999
Q ss_pred HHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 011035 116 CGQAFGGKKYYMLGVYMQRSWIVLFICCVLLLPL-YVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFL 194 (495)
Q Consensus 116 is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l 194 (495)
+++..+++|+++.++..++...+...++++.+++ ..++++++..+.+++ .+.+++++.++..++..+.....+.+
T Consensus 299 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~----~~~~~l~i~~~~~~~~~~~~~~~~~l 374 (488)
T TIGR02900 299 ISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRP----DAGNFIRVLAPSFPFLYFSAPLQSIL 374 (488)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998888765 678888888876543 25678999999999999999999999
Q ss_pred HHccchhHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhc
Q 011035 195 QSQLKTMVIAWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVAC 253 (495)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~ 253 (495)
++.||++.+++.+++..+++++++++++....+|+.|+++++.+++.+...+..++.+|
T Consensus 375 ~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~ 433 (488)
T TIGR02900 375 QGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKK 433 (488)
T ss_pred HhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999874445899999999999999998888877765
No 29
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.69 E-value=3e-13 Score=132.87 Aligned_cols=204 Identities=15% Similarity=0.147 Sum_probs=187.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcchH
Q 011035 49 IESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYML 128 (495)
Q Consensus 49 ~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~~~~~~~~~ 128 (495)
+..|++.+...|+.++..+.++...+|+.+.+.+.+...+.+.++..+.++..-.+..++++...|..||...++|.++.
T Consensus 229 ~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~ 308 (518)
T COG0728 229 PGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEF 308 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHH
Confidence 47889999999999999999999999999999999999999999999999977799999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCC----CHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHccchhHH
Q 011035 129 GVYMQRSWIVLFICCVLLLPL-YVFASPVLKLLGQ----PDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVI 203 (495)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 203 (495)
++..++++.+.+++++|.+.+ ..+++|++..+.. +++....+...+..+.+++++..+..++...+.+.+|+|.|
T Consensus 309 ~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP 388 (518)
T COG0728 309 LKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTP 388 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcC
Confidence 999999999999999999875 7899999977643 45667777888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhcC
Q 011035 204 AWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACG 254 (495)
Q Consensus 204 ~~~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~ 254 (495)
+++.+++.++|+.+++.+... +|..|.++++.++..+.+.++++..+|+
T Consensus 389 ~~i~ii~~~~n~~l~~~l~~~--~~~~giala~s~a~~~~~~ll~~~l~k~ 437 (518)
T COG0728 389 MKIAIISLVVNILLNLLLIPP--LGHVGLALATSLAAWVNALLLYYLLRKR 437 (518)
T ss_pred hHHHHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999777754 6888899999999989988888888776
No 30
>PRK10459 colanic acid exporter; Provisional
Probab=99.64 E-value=8.6e-13 Score=134.45 Aligned_cols=201 Identities=14% Similarity=0.012 Sum_probs=172.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcc
Q 011035 48 WIESKKLWHIVGPTIFSRMASYSMFVITQAFAGH-LGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYY 126 (495)
Q Consensus 48 ~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~~~~~~~ 126 (495)
++..|++++.+.|...+++...+...+|+.++++ +|++++|.|+.+.++.++....+...++....|..++. ++|++
T Consensus 203 ~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~ 280 (492)
T PRK10459 203 LASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTE 280 (492)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHH
Confidence 3567899999999999999999999999999999 59999999999999998755556666778888988885 57788
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHccchhHHHH
Q 011035 127 MLGVYMQRSWIVLFICCVLLLPL-YVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAW 205 (495)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 205 (495)
+.++.+++...+...+++++.++ ..++++++..+.+++ +..+...++++++...+..+.......+++.||+|....
T Consensus 281 ~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~ 358 (492)
T PRK10459 281 KLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFK 358 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHH
Confidence 89999999999988888888765 678888887776543 566789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhcC
Q 011035 206 VSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACG 254 (495)
Q Consensus 206 ~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~ 254 (495)
.+++..+++++..+.+.. .+|+.|+++++.+++.+...+..++..||
T Consensus 359 ~~~~~~~~~i~~~~~~~~--~~G~~g~a~a~~i~~~~~~~~~~~~~~~~ 405 (492)
T PRK10459 359 WNVFKTFLFIPAIVIGGQ--LAGLIGVALGFLLVQIINTILSYFLMIKP 405 (492)
T ss_pred HHHHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988888887766664 37999999999999999888887777553
No 31
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=99.62 E-value=2.2e-12 Score=119.13 Aligned_cols=247 Identities=14% Similarity=0.133 Sum_probs=178.1
Q ss_pred HHHHHHHHHhhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 011035 70 SMFVITQAFAGH-LGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYMLGVYMQRSWIVLFICCVLLLP 148 (495)
Q Consensus 70 ~~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (495)
+.+++..++++| +|++++|.++....+..+.......|++..... ..++|+++.++..+.......+.+++..+
T Consensus 2 ~~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (251)
T PF13440_consen 2 GINFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAI 76 (251)
T ss_pred hHHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677888999 699999999999999998555557777776433 23355666667666666554444433333
Q ss_pred HHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHhhcCCc
Q 011035 149 LYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLLVTWLFVYKMQLG 228 (495)
Q Consensus 149 ~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g 228 (495)
+. ..+...+ .+++ ...++....+..+.........+.+++.+|.+..........+.......++.. .+.+
T Consensus 77 ~~---~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 147 (251)
T PF13440_consen 77 LA---ILIAYFF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLY-LGLN 147 (251)
T ss_pred HH---HHHHHHh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHH-HHhh
Confidence 21 1122233 3332 223455666778888889999999999999999999999998877555444444 3458
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhcCCcCCccCCCChHhHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCChhHH
Q 011035 229 LIGTAITLSFSWWVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVASGVMLCLENWYYRVLILMTGNLQNAKIA 308 (495)
Q Consensus 229 ~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (495)
..+..++..++..+..++.....+++ .+. .+ +.+.. +.++.+.|..+.++........|..+++.+.+ .++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~-~~~ 218 (251)
T PF13440_consen 148 LWSILLAFIISALLALLISFYLLRRK-LRL--SF----KFSWR-RLLKYGLPFSLSSLLSWLLSQIDRLLIGYFLG-PEA 218 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc-cCC--Cc----hhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHH
Confidence 88899999999887776665543322 111 11 11223 47999999999999999999999999999333 568
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 011035 309 VDALSICMSINGWEL-MIPLSFFAGTGVRVSN 339 (495)
Q Consensus 309 va~~~~~~~i~~~~~-~~~~~l~~a~~~~i~~ 339 (495)
+|.|+++.++.+.+. .+..++++...|.++|
T Consensus 219 ~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar 250 (251)
T PF13440_consen 219 VGIYSVAQRLASLPASLLSSAISSVFFPKLAR 250 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999888 9999999999999986
No 32
>PRK15099 O-antigen translocase; Provisional
Probab=99.61 E-value=3.3e-13 Score=134.32 Aligned_cols=199 Identities=7% Similarity=-0.031 Sum_probs=170.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcc
Q 011035 48 WIESKKLWHIVGPTIFSRMASYSMFVITQAFAGH-LGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYY 126 (495)
Q Consensus 48 ~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~~~~~~~ 126 (495)
++..|++++.+.|..+++....+....|+.++++ +|++++|.|+.+.++...+...+..+++++..|.++++ +|++
T Consensus 211 ~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~ 287 (416)
T PRK15099 211 NGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEKR 287 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChH
Confidence 4578999999999999999999999999999985 89999999999999988646789999999999999995 5678
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHccchhHHHH
Q 011035 127 MLGVYMQRSWIVLFICCVLLLPL-YVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAW 205 (495)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 205 (495)
+.++..++.......++++++++ ++++++++.++.+++ ++.+.+++++++++.++...+......+.+.++.+....
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~ 365 (416)
T PRK15099 288 DITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYIL 365 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999998888888777665 688999998887654 344677888988888888877777777778888888888
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhc
Q 011035 206 VSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVAC 253 (495)
Q Consensus 206 ~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~ 253 (495)
..+...+++++++++++.. +|..|+++++.+++.+...+..+...+
T Consensus 366 ~~~~~~~l~i~l~~~li~~--~G~~G~a~a~~is~~~~~~~~~~~~~~ 411 (416)
T PRK15099 366 AEVSQFTLLTGFAHWLIPL--HGALGAAQAYMATYIVYFSLCCGVFLL 411 (416)
T ss_pred HHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888889999999999975 799999999999999998877765543
No 33
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.53 E-value=4e-12 Score=129.21 Aligned_cols=185 Identities=20% Similarity=0.231 Sum_probs=167.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCc
Q 011035 47 FWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGH-LGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKY 125 (495)
Q Consensus 47 ~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~~~~~~ 125 (495)
.++..|++++.+.|..+++....+...+|+.++++ +|++++|.|+.+..+... ...+...++....|.+++...++|+
T Consensus 208 ~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~-~~~~~~~l~~~l~P~~s~~~~~~~~ 286 (480)
T COG2244 208 SLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSL-LLIVASALNRVLFPALSRAYAEGDR 286 (480)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHH-HHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 46789999999999999999999999999999999 599999999988888887 8889999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHccchhHHH
Q 011035 126 YMLGVYMQRSWIVLFICCVLLLPL-YVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIA 204 (495)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 204 (495)
++.++..++...+....+++..++ ..++++++..+.+++. ..+...+.++++..++..+.......+++.|+.+...
T Consensus 287 ~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~--~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~ 364 (480)
T COG2244 287 KALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKY--ASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLL 364 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence 999999999999999999999876 6788888877765542 2266788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCccchHHHHH
Q 011035 205 WVSLASLLVHLLVTWLFVYKMQLGLIGTAITL 236 (495)
Q Consensus 205 ~~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~ 236 (495)
..+.++.++|++++++++.. +|..|++.++
T Consensus 365 ~~~~~~~i~~~~l~~~li~~--~g~~g~~~a~ 394 (480)
T COG2244 365 LISLISALLNLILNLLLIPR--FGLIGAAIAT 394 (480)
T ss_pred HHHHHHHHHHHHHHhHHHHh--hhhhhHHHHH
Confidence 99999999999999999964 6888899888
No 34
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=99.39 E-value=1.9e-09 Score=108.42 Aligned_cols=421 Identities=10% Similarity=-0.007 Sum_probs=253.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc-cChHHHHHHHHHHHHH-HHHHHHHHHHHHHhHHHHHHhhhcCCCcchHHHHH
Q 011035 55 WHIVGPTIFSRMASYSMFVITQAFAGH-LGDLELAAISIANTVV-VAFNFGLLLGMASALETLCGQAFGGKKYYMLGVYM 132 (495)
Q Consensus 55 ~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~~~-~~~~~~~~~gl~~~~~~~is~~~~~~~~~~~~~~~ 132 (495)
.+.+.-+++.+++..+.+++.+.++-| ++|+.+|..++=..+. +.+.+..=-++-.+.+..-.....++|.++..+..
T Consensus 4 ~~gas~li~lQl~sRllTFvlN~lllR~lsp~ilGi~nv~LeLl~sTILFlSRE~fR~A~lR~~~~~~~~~~~~~~~n~~ 83 (549)
T PF04506_consen 4 AKGASFLILLQLLSRLLTFVLNQLLLRFLSPEILGIANVQLELLYSTILFLSREAFRRACLRQPSSSIDKSNWAQSINLL 83 (549)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCcccHHHhhhcc
Confidence 345566788899999999999988888 6999999885544443 33345566677777544333321111222222222
Q ss_pred HHHHHHHHHHHHHHHHHHH--hhHH----HHHHcCCC-HH---HHHHHHHHHHHHhhhHHHHHHHHHH----HHHHHHcc
Q 011035 133 QRSWIVLFICCVLLLPLYV--FASP----VLKLLGQP-DD---VAELSGVVSLWLLPVHFSFAFQFPL----QRFLQSQL 198 (495)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~--~~~~----i~~~~~~~-~~---~~~~~~~~l~i~~~~~~~~~~~~~~----~~~l~~~~ 198 (495)
+....+..+++++++.+.+ ...+ ...+.... ++ ..+.....+.+...+.....+...+ +..+.-.-
T Consensus 84 wls~~lq~vvn~~~~~I~l~~igi~~~~~~~~~~~~~~~~~~~~~p~~~~~v~l~~~s~~iELlsEP~~il~Q~~l~~~~ 163 (549)
T PF04506_consen 84 WLSVPLQAVVNLICSYIWLAWIGIPLSILLSQYQYASISNAFVIEPYFEPSVFLYGLSAFIELLSEPLYILAQQMLFFKL 163 (549)
T ss_pred cccCcchhheehhHHHHhHhhccccHHHHHHHHHhhcchhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhe
Confidence 2222223333332221111 0110 11111111 11 1222233334444444444444444 44444444
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhh-cCCcc-----c-hHHHHHHHHHHHHHHHHHHHHhc-C--C---cCCccCCCCh
Q 011035 199 KTMVIAWVSLASLLVHLLVTWLFVYK-MQLGL-----I-GTAITLSFSWWVLIFGMFGYVAC-G--G---CPRTWTGFSM 265 (495)
Q Consensus 199 ~~~~~~~~~~~~~~~~i~~~~~li~~-~~~g~-----~-g~a~a~~i~~~~~~~~~~~~~~~-~--~---~~~~~~~~~~ 265 (495)
|.+..........+++..+....... .+++. . -+.++..+++............. . . .+...++...
T Consensus 164 Rv~~E~~A~~~k~i~t~~~v~~~~~~~~~~~~~~~~~~~~~~l~Falgq~~ys~~l~~~y~~~~~~~~~~~s~~lp~i~~ 243 (549)
T PF04506_consen 164 RVKAESLAVFAKCIVTFALVVLAERSGYGFFYFLSGQEGLAILAFALGQLAYSITLFFCYYWMYFFPFKSFSDLLPKISS 243 (549)
T ss_pred eeEechHHHHHHHHHHHHHHHHHHhcccceeeeeccchhHHHHHHHHHHHHHHHHHHhhHHhhccCcccchhhccccccc
Confidence 55555555555555554443333221 11111 1 12344455554444332221111 1 1 1111111111
Q ss_pred ---HhHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc--CCChhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 011035 266 ---EAFSDLWEFVKLSVASGVMLCLENWYYRVLILMTGN--LQNAKIAVDALSICMSINGWEL-MIPLSFFAGTGVRVSN 339 (495)
Q Consensus 266 ---~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~~va~~~~~~~i~~~~~-~~~~~l~~a~~~~i~~ 339 (495)
.....-+++++.......+++...+..+-+.+++.. +.+.+ +-|.|++++++.+++- .+...+-.+.....++
T Consensus 244 ~~~~~~~fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~-~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk 322 (549)
T PF04506_consen 244 GNPKSYYFDRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFE-DQGVYALVSNYGSLVARLLFQPIEESSRLYFSK 322 (549)
T ss_pred cccccccCCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHH-HhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHH
Confidence 011124688888999999999999999999998888 66644 6689999999988876 6677888888888888
Q ss_pred hhcCCCh---------hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhHHH
Q 011035 340 ELGAGNG---------KGARFATIVSVVTSIAIGVFFFILILIFHNELALIFSSSEAILQVVSKMSILLAFTILLNSVQP 410 (495)
Q Consensus 340 ~~g~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 410 (495)
...+++. ++..+.....++....+++.+.......++.+..++.++......+...++.++...++.+++.
T Consensus 323 ~l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NG 402 (549)
T PF04506_consen 323 LLSRDNSKKKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAING 402 (549)
T ss_pred HhcccCchhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHcc
Confidence 7765432 4466677777888888887777777777888888876654434457889999999999999999
Q ss_pred HHHHHhhhcCCcchhHHHHHHHH--HHhhhHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHhcc
Q 011035 411 VLSGVAVGSGWQSIVAYINLGCY--YLIGVPLGILLGWVFHQGVMGIWAGMIFGGTAVQTLILAIITMRC 478 (495)
Q Consensus 411 ~~~~~l~~~g~~~~~~~~~~~~~--~~i~i~l~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~ 478 (495)
+.....++....+.....+-... .++.+..++++... .+|..|..+|.. +.+.++.+....+++|.
T Consensus 403 i~EaF~~s~a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~-iNM~lRI~ys~~fI~~~ 470 (549)
T PF04506_consen 403 ITEAFVFSVASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANC-INMSLRIIYSLRFIRRY 470 (549)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 99999999988776655443321 34566677777733 699999999999 99999999888887764
No 35
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.29 E-value=3.5e-10 Score=112.21 Aligned_cols=205 Identities=14% Similarity=0.145 Sum_probs=187.2
Q ss_pred HhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCCh
Q 011035 268 FSDLWEFVKLSVASGVMLCLENWYYRVLILMTGNLQNAKIAVDALSICMSINGW-ELMIPLSFFAGTGVRVSNELGAGNG 346 (495)
Q Consensus 268 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~i~~~-~~~~~~~l~~a~~~~i~~~~g~~~~ 346 (495)
+.+.|++++++.|..+....+.....++..+++++|+ .+.++.++++...+. .+.+..++..+..|.++|.+|++++
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~--leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~ 101 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGN--LELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKF 101 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccc--hHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhccccc
Confidence 5678999999999999999999999999999999995 477788888887776 4578899999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhcCCcchhH
Q 011035 347 KGARFATIVSVVTSIAIGVFFFILILIFHNELALIFSSSEAILQVVSKMSILLAFTILLNSVQPVLSGVAVGSGWQSIVA 426 (495)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 426 (495)
+.......++........+|.+.. +.+.+++...+.+|+++...+..+.++..+..+-......+...+++.+++....
T Consensus 102 ~~lg~~lqrs~~~l~~~~~~~~~l-~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~ 180 (473)
T KOG1347|consen 102 TALGVYLQRSGIVLLVQGLPISLL-ILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLL 180 (473)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHH-HHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHH
Confidence 999999999999999999998854 5567999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHhc
Q 011035 427 YINLGCYYLIGVPLGILLGWVFHQGVMGIWAGMIFGGTAVQTLILAIITMR 477 (495)
Q Consensus 427 ~~~~~~~~~i~i~l~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 477 (495)
++.... .++++++.+++.+.+++|..|+..+.. +++.+.......+...
T Consensus 181 ~~~~~~-~~lhi~~~~llv~~~~~g~~Gaala~~-~s~w~~~~~l~~yi~~ 229 (473)
T KOG1347|consen 181 VIGLVA-LVLHILLTWLLVSKLGLGIKGAALALV-ASYWLNVRILLLYAVL 229 (473)
T ss_pred HHHHHH-HHHHHHHHHHhhhcccCCCccchHHHH-HHHHHHHHHHHHHhee
Confidence 999999 799999999999999999999999999 9999888877766654
No 36
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=99.14 E-value=3e-07 Score=83.09 Aligned_cols=311 Identities=13% Similarity=0.055 Sum_probs=193.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-c-Ch-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcc
Q 011035 50 ESKKLWHIVGPTIFSRMASYSMFVITQAFAGH-L-GD-LELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYY 126 (495)
Q Consensus 50 ~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-l-g~-~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~~~~~~~ 126 (495)
..+++.++-.|+.++..+..+...+.+.-++| . .+ +.+++|+++.++.-+ ...+...+-.....++ +++++
T Consensus 9 ~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf-~~sp~~~~~~igl~~V-----~s~rs 82 (345)
T PF07260_consen 9 SYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLF-FASPLSMFHHIGLVFV-----NSKRS 82 (345)
T ss_pred hHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHH-HhChhhhhHHHHHHHh-----cchhh
Confidence 56789999999999999999999999999998 4 23 459999999999887 6667776666644444 33333
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-HH-HhhHHHH-HHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHccchhHH
Q 011035 127 MLGVYMQRSWIVLFICCVLLLP-LY-VFASPVL-KLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVI 203 (495)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~i~-~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 203 (495)
.++........+.+..++..+ .+ .+...++ ..++.++++.+.+...+.++.+.-++.++....++++-=.+++...
T Consensus 83 -rr~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~iV 161 (345)
T PF07260_consen 83 -RRKAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWIV 161 (345)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeEe
Confidence 233333333333333222222 23 3444444 5678899999999999999999999999999999988877777776
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCC----ccchHHHHHHHHHHHHHHHHHHHHhcC--CcCCccCCCChHhHhhHHHHHHH
Q 011035 204 AWVSLASLLVHLLVTWLFVYKMQL----GLIGTAITLSFSWWVLIFGMFGYVACG--GCPRTWTGFSMEAFSDLWEFVKL 277 (495)
Q Consensus 204 ~~~~~~~~~~~i~~~~~li~~~~~----g~~g~a~a~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 277 (495)
...++...+..+++..+++.. +. +..--.++...+..+.+.+...-.+++ +..+.......++...+++++++
T Consensus 162 ~~aSI~~v~~qvV~v~~ll~~-~l~~~~pllipil~~y~g~~vr~t~v~LGy~~~i~~~~p~~~~~~~~~~~tl~~~l~F 240 (345)
T PF07260_consen 162 GSASIADVIAQVVLVAILLSM-HLEPQDPLLIPILALYAGIAVRFTIVCLGYYQSIHDIIPQLSGLEKGDSATLQRMLKF 240 (345)
T ss_pred ehHHHHHHHHHHHHHHHHHcc-ccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcccCCChhHHHHHHH
Confidence 666666666656555555531 11 111112233333332222222222211 22222222333344579999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhc-CCCh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhH----
Q 011035 278 SVASGVMLCLENWYYRVLILMTGN-LQNA---KIAVDALSICMSINGWELMIPLSFFAGTGVRVSNELGAGNGKGA---- 349 (495)
Q Consensus 278 ~~p~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~va~~~~~~~i~~~~~~~~~~l~~a~~~~i~~~~g~~~~~~~---- 349 (495)
.+|.+.....+.+...+.+.+++| +++. .++++...+.+...-..+...+-+ .+..|..-+ .++.++.
T Consensus 241 ~~PL~~~~~tq~~SrplVnl~vsR~l~gs~a~~~avavl~~~ypvgh~~y~w~~~~-r~~~paf~~---~~~~~~~~~~~ 316 (345)
T PF07260_consen 241 WWPLALVLATQRISRPLVNLFVSRDLSGSQAATEAVAVLTATYPVGHMPYGWLTEL-RAVYPAFDK---NNPQNKLRNCG 316 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCcccchhhhhhhccccCCCcCcchhHHhH-HhhCchhhc---cCccccccccc
Confidence 999999999999999999999999 5543 245666555555544444333221 223333321 1222222
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHH
Q 011035 350 ----RFATIVSVVTSIAIGVFFFILIL 372 (495)
Q Consensus 350 ----~~~~~~~~~~~~~~~~~~~~~~~ 372 (495)
+...++....++.+.+.++..++
T Consensus 317 ~~v~~~~~~kf~~~c~~~sl~~~f~~f 343 (345)
T PF07260_consen 317 NPVTQSHISKFVVLCLLLSLALCFVMF 343 (345)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33667777777777777776654
No 37
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.14 E-value=1e-06 Score=83.23 Aligned_cols=417 Identities=12% Similarity=-0.003 Sum_probs=243.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHhhhcCCCcch
Q 011035 50 ESKKLWHIVGPTIFSRMASYSMFVITQAFAGH-LGDLELAAISIANTVVVA-FNFGLLLGMASALETLCGQAFGGKKYYM 127 (495)
Q Consensus 50 ~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~-~~~~~~~gl~~~~~~~is~~~~~~~~~~ 127 (495)
......+.+.-.+..+++..+.+++.+.++-| ++++.+|..++-..+.+- +.+..--++.-+..+.-++. +++.++
T Consensus 6 vL~ss~~ga~~~i~~Q~~~RiiTF~lN~~liR~~s~~v~gi~nvrl~lL~sTiLFlsREair~A~l~~gs~~--~d~~te 83 (530)
T KOG2864|consen 6 VLESSFSGAVFSIRGQLLARIITFALNALLIRFLSPEVLGIVNVRLELLQSTILFLSREAIRLAELRIGSEP--ADTWTE 83 (530)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcChhheehhHHHHHHHHHHHHHhhHHHHHHHhccCCCCC--CccHHH
Confidence 34445666677778888888888887777777 699999998776665543 23333444555533322221 122334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHccchhHHHHH
Q 011035 128 LGVYMQRSWIVLFICCVLLLPLYVFASPVLKLLGQPDD-VAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWV 206 (495)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 206 (495)
..+..+.+..+..+..+++.-+++. ... . .++. ..+....-..+...+.+.-.+...+.-..|...+.+.-.+.
T Consensus 84 ~~n~~wlS~~L~~~i~~~~i~~wl~--~~~-s--~d~i~~~p~y~~~I~~~~~S~vvELlsEp~~iv~Q~~~~~~~~~i~ 158 (530)
T KOG2864|consen 84 FINLLWLSVPLQTAINVACIYFWLG--FLS-S--SDEISYSPLYAFAIFIIGLSIVVELLSEPLYIVSQCGLKVQLRAIA 158 (530)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHH--Hhh-c--cchhhcCchHhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 4455555555555544444333211 111 0 0110 11112222344444555555555555566666666666677
Q ss_pred HHHHHHHHHHHHHHHHh-hc-CCccchHHHHHHHHHHHHHHHHHHHHhcC-C-cCCc---------cCCCChH--hHhhH
Q 011035 207 SLASLLVHLLVTWLFVY-KM-QLGLIGTAITLSFSWWVLIFGMFGYVACG-G-CPRT---------WTGFSME--AFSDL 271 (495)
Q Consensus 207 ~~~~~~~~i~~~~~li~-~~-~~g~~g~a~a~~i~~~~~~~~~~~~~~~~-~-~~~~---------~~~~~~~--~~~~~ 271 (495)
..+..++.-++.+.... +. .+++..-|+|.........+...++..+. + .+.. .++.... ..-.-
T Consensus 159 e~l~~~v~~i~~fa~lv~~~~~~~l~~FAlaql~~~itl~l~y~~~Yf~~~~s~~~~~~~~r~Sdllpk~~~n~~~~ffd 238 (530)
T KOG2864|consen 159 EGLATIVKCIVLFAGLVMGPNMYALLAFALAQLAYAITLLLCYYWFYFYIRGSIPETEPFSRFSDLLPKVSENERGIFFD 238 (530)
T ss_pred hHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcccccchhhhhhhccCCCCCCcccccc
Confidence 77766666333333333 22 23555666666666544444223322222 2 0000 0000000 00012
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCh-hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCChhhH
Q 011035 272 WEFVKLSVASGVMLCLENWYYRVLILMTGNLQNA-KIAVDALSICMSINGWEL-MIPLSFFAGTGVRVSNELGAGNGKGA 349 (495)
Q Consensus 272 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~va~~~~~~~i~~~~~-~~~~~l~~a~~~~i~~~~g~~~~~~~ 349 (495)
++..+.-.....+.+..++...-+..++...... -.+-|.|.++++.-++.. ++...+-.......++...+++.|+.
T Consensus 239 ~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~ 318 (530)
T KOG2864|consen 239 NDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENV 318 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhH
Confidence 3455555566666677777777666665522110 013358888888877665 66677777777777777766655554
Q ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhcCCcchhH
Q 011035 350 R---FATIVSVVTSIAIGVFFFILILIFHNELALIFSSSEAILQVVSKMSILLAFTILLNSVQPVLSGVAVGSGWQSIVA 426 (495)
Q Consensus 350 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 426 (495)
+ ++....++....+++..+....-.++.+..++.+..-....+...++++++..++.+++.+..+...+.+..+..-
T Consensus 319 k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~ 398 (530)
T KOG2864|consen 319 KKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQID 398 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHHH
Confidence 4 4455556666666666666666667788888766543334567899999999999999999999999988776654
Q ss_pred HHH---HHHHHHhhhHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHhc
Q 011035 427 YIN---LGCYYLIGVPLGILLGWVFHQGVMGIWAGMIFGGTAVQTLILAIITMR 477 (495)
Q Consensus 427 ~~~---~~~~~~i~i~l~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 477 (495)
..+ .+. .++.+.+.+++. -.+|..|..+|.. +.+.++-+....++++
T Consensus 399 ~~n~~mlaf-SviflilsylL~--~~~~~~GlIlANi-iNm~lRIlys~~fI~~ 448 (530)
T KOG2864|consen 399 KHNKFMLAF-SVIFLILSYLLI--RWFGLVGLILANI-INMSLRILYSLRFIRH 448 (530)
T ss_pred hcccchhHH-HHHHHHHHHHHH--HHhchhHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 433 222 356677888888 5689999999999 9999988877666654
No 38
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.50 E-value=2.7e-05 Score=78.87 Aligned_cols=203 Identities=8% Similarity=0.011 Sum_probs=159.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--c-ChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCc--
Q 011035 51 SKKLWHIVGPTIFSRMASYSMFVITQAFAGH--L-GDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKY-- 125 (495)
Q Consensus 51 ~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~--l-g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~~~~~~-- 125 (495)
-++++++.......+++..+.+--|.+++.. + +.++.|.|+++.++-+++.-.+...+.-+.-...++...+++.
T Consensus 252 d~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~ 331 (549)
T PF04506_consen 252 DRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKK 331 (549)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchh
Confidence 3678888999999999999999999999999 6 8999999999999999988888889999988888888765433
Q ss_pred -------chHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHc
Q 011035 126 -------YMLGVYMQRSWIVLFICCVLLLP-LYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQ 197 (495)
Q Consensus 126 -------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~ 197 (495)
++..+.+...+.+...+++++.. +...++.++..++++.=..+.+...+++.+..+|+.+++.+..++.++.
T Consensus 332 ~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~ 411 (549)
T PF04506_consen 332 KQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSV 411 (549)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 23455666666666666655544 3566666777765443223335677899999999999999999999988
Q ss_pred cchhHHHHHH---HHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhcC
Q 011035 198 LKTMVIAWVS---LASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACG 254 (495)
Q Consensus 198 ~~~~~~~~~~---~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~ 254 (495)
...+.....+ ....++.+..+++++.+ ++|..|..+|+.+...+......++.++.
T Consensus 412 a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~ 470 (549)
T PF04506_consen 412 ASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRY 470 (549)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766554444 44456667778888876 78999999999999999999988888764
No 39
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.46 E-value=2.6e-05 Score=65.20 Aligned_cols=79 Identities=22% Similarity=0.249 Sum_probs=73.1
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhc
Q 011035 174 SLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVAC 253 (495)
Q Consensus 174 l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~ 253 (495)
+++.+++.++..+.......+++.||++..+..++++.++|++++++++.. +|..|+++|+.+++.+...+..++.+|
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~~--~G~~Gaa~a~~i~~~~~~~~~~~~~~k 79 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIPR--FGIYGAAIATAISEIVSFILNLWYVRK 79 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568889999999999999999999999999999999999999999999854 899999999999999999988888876
Q ss_pred C
Q 011035 254 G 254 (495)
Q Consensus 254 ~ 254 (495)
+
T Consensus 80 ~ 80 (146)
T PF14667_consen 80 K 80 (146)
T ss_pred H
Confidence 5
No 40
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.16 E-value=1.8e-05 Score=66.23 Aligned_cols=79 Identities=15% Similarity=0.112 Sum_probs=74.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHhhhcCCcchhHHHHHHHHHHhhhHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHH
Q 011035 396 SILLAFTILLNSVQPVLSGVAVGSGWQSIVAYINLGCYYLIGVPLGILLGWVFHQGVMGIWAGMIFGGTAVQTLILAIIT 475 (495)
Q Consensus 396 l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~i~l~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~ 475 (495)
+++++++.++.++....+.++++.||++..++.+..+ .++++++.+++. +++|..|++++.. +++.....+..+..
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~-~~v~i~~~~~li--~~~G~~Gaa~a~~-i~~~~~~~~~~~~~ 77 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIG-AIVNIILNYILI--PRFGIYGAAIATA-ISEIVSFILNLWYV 77 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH-HHHHHHHHHHHH--HHHHHhHHHHHHH-HHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999 799999999997 8899999999999 99999999988888
Q ss_pred hcc
Q 011035 476 MRC 478 (495)
Q Consensus 476 ~~~ 478 (495)
+|.
T Consensus 78 ~k~ 80 (146)
T PF14667_consen 78 RKK 80 (146)
T ss_pred HHH
Confidence 875
No 41
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=98.13 E-value=0.00057 Score=63.56 Aligned_cols=187 Identities=17% Similarity=0.132 Sum_probs=112.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcCCChhhHHHHHH
Q 011035 276 KLSVASGVMLCLENWYYRVLILMTGNLQNAKIAVDALSICMSINGWELMI-PLSFFAGTGVRVSNELGAGNGKGARFATI 354 (495)
Q Consensus 276 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~i~~~~~~~-~~~l~~a~~~~i~~~~g~~~~~~~~~~~~ 354 (495)
|-.......+....+...+...++.+.-+ +++.|.|+....+.++...+ ..|+.++..-.+++...+ .+..++...
T Consensus 3 k~~~~~~~~~~~~~~~~~~~~~il~r~l~-~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~ 79 (273)
T PF01943_consen 3 KNSLWLFLSNILSALIGFITIPILARYLG-PEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFS 79 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-HHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHH
Confidence 33444555555666655556666665554 44889999999998888766 678888887777765443 233333333
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhcCCcchhHHHHHHHHH
Q 011035 355 VSVVTSIAIGVFFFILILIFHNELALIFSSSEAILQVVSKMSILLAFTILLNSVQPVLSGVAVGSGWQSIVAYINLGCYY 434 (495)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 434 (495)
.......+..+... . ...+...+.. ++.. ..+........++.........++++.++.+.....++...
T Consensus 80 ~~~~~~~~~~~i~~-~----~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 149 (273)
T PF01943_consen 80 SVLFLLLIFSLIFL-L----ILLIASFFGN-PSLS---LILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISS- 149 (273)
T ss_pred HHHHHHHHHHHHHH-H----HHHHHHHcCC-chHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 33333332222222 2 2222223333 3211 11122222222577888888999999999999998888884
Q ss_pred HhhhHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHhc
Q 011035 435 LIGVPLGILLGWVFHQGVMGIWAGMIFGGTAVQTLILAIITMR 477 (495)
Q Consensus 435 ~i~i~l~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 477 (495)
+......+.+.. ...+..+..++.. ++..+..++.....+|
T Consensus 150 ~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 190 (273)
T PF01943_consen 150 LLSLLLILLLLF-LGSSLWGFLLGLV-ISSLVSLIISLFYLRR 190 (273)
T ss_pred HHHHHHHHHHHH-HhhhHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 555555444442 2334888888888 8888887777777664
No 42
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=98.11 E-value=0.002 Score=58.92 Aligned_cols=165 Identities=12% Similarity=0.146 Sum_probs=115.9
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChh
Q 011035 269 SDLWEFVKLSVASGVMLCLENWYYRVLILMTGN-LQNAKIAVDALSICMSINGWELMIPLSFFAGTGVRVSNELGAGNGK 347 (495)
Q Consensus 269 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~va~~~~~~~i~~~~~~~~~~l~~a~~~~i~~~~g~~~~~ 347 (495)
.+.+++.++-+|.++++.+..+.-.+.|.-+++ ..+..+.+|+|+++..+.-++..+...+.+.....+. ++.+
T Consensus 8 ~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V~-----s~rs 82 (345)
T PF07260_consen 8 TSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFVN-----SKRS 82 (345)
T ss_pred chHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHhc-----chhh
Confidence 567899999999999999999999999988877 4444456899999999999999888888887777663 2222
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHH----hhh-hhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhcCC
Q 011035 348 GARFATIVSVVTSIAIGVFFFIL-ILI----FHN-ELALIFSSSEAILQVVSKMSILLAFTILLNSVQPVLSGVAVGSGW 421 (495)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~-~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~ 421 (495)
-++..... .+.+...+.+ ..+ +.. .+..++.-|+++.+.+...+.++.+..+++++.....+++.=.++
T Consensus 83 -rr~~vl~~----~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~ 157 (345)
T PF07260_consen 83 -RRKAVLCM----AVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRH 157 (345)
T ss_pred -hHHHHHHH----HHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccc
Confidence 22222222 2223222222 111 112 334456678999999999999999999999999999998886677
Q ss_pred cchhHHHHHHHHHHhhhHHHHHH
Q 011035 422 QSIVAYINLGCYYLIGVPLGILL 444 (495)
Q Consensus 422 ~~~~~~~~~~~~~~i~i~l~~~l 444 (495)
+......++.. ....+.+..++
T Consensus 158 s~iV~~aSI~~-v~~qvV~v~~l 179 (345)
T PF07260_consen 158 SWIVGSASIAD-VIAQVVLVAIL 179 (345)
T ss_pred eeEeehHHHHH-HHHHHHHHHHH
Confidence 77776666665 33334333333
No 43
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.95 E-value=0.0033 Score=60.17 Aligned_cols=201 Identities=9% Similarity=0.054 Sum_probs=147.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcchH
Q 011035 52 KKLWHIVGPTIFSRMASYSMFVITQAFAGH---LGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYML 128 (495)
Q Consensus 52 ~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~---lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~~~~~~~~~ 128 (495)
++..+.........++..+.+=-|.+++.- ++-.+-|.|.++.++-+++.-.+...+.-..-.+.+|...++++|+.
T Consensus 239 ~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~ 318 (530)
T KOG2864|consen 239 NDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENV 318 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhH
Confidence 345666666677788888888889998884 36678889999999988878888888988888889998888777666
Q ss_pred HHHH---HHHHHHHHHHHHHHHH-HHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHccchhHHH
Q 011035 129 GVYM---QRSWIVLFICCVLLLP-LYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIA 204 (495)
Q Consensus 129 ~~~~---~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 204 (495)
++.. .+.+.+...++++.+. +...++..+.+.+++.=........+++.++.+|+.+++.+..+++.+.+..+-.-
T Consensus 319 k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~ 398 (530)
T KOG2864|consen 319 KKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQID 398 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHHH
Confidence 6544 4445555555544433 24556666677665432233345679999999999999999999999887765443
Q ss_pred ---HHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhcC
Q 011035 205 ---WVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACG 254 (495)
Q Consensus 205 ---~~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~ 254 (495)
....+..+...+.+++++.+ +|..|..+|.++...+.-+....++++.
T Consensus 399 ~~n~~mlafSviflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~fI~~~ 449 (530)
T KOG2864|consen 399 KHNKFMLAFSVIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLRFIRHY 449 (530)
T ss_pred hcccchhHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455567778889999987 5779999999998877777666666543
No 44
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=97.88 E-value=0.0053 Score=56.31 Aligned_cols=163 Identities=17% Similarity=0.193 Sum_probs=102.6
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011035 296 ILMTGNLQNAKIAVDALSICMSINGWELMIP-LSFFAGTGVRVSNELGAGNGKGARFATIVSVVTSIAIGVFFFILILIF 374 (495)
Q Consensus 296 ~~~~~~~~~~~~~va~~~~~~~i~~~~~~~~-~~l~~a~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (495)
..++++.-+ .++.|.|+....+..+...+. .++.+...- ..++++++.++..+.......+..+...++
T Consensus 8 ~~~lar~l~-~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 77 (251)
T PF13440_consen 8 LILLARYLG-PEDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAIL---- 77 (251)
T ss_pred HHHHHHHCC-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 344555444 347889999999888877663 444433322 233556666666666665544444443333
Q ss_pred hhhhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhcCCcchhHHHHHHHHHHhhhHHHHHHHHHhccCcch
Q 011035 375 HNELALIFSSSEAILQVVSKMSILLAFTILLNSVQPVLSGVAVGSGWQSIVAYINLGCYYLIGVPLGILLGWVFHQGVMG 454 (495)
Q Consensus 375 ~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~i~l~~~l~~~~~~g~~g 454 (495)
...+...+ ++++ ...++.+..+..++..........+++.+|.+.......... +........+.+ ...+..+
T Consensus 78 ~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~ 150 (251)
T PF13440_consen 78 AILIAYFF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRS-LLRLLLLVLLLY-LGLNLWS 150 (251)
T ss_pred HHHHHHHh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH-HHHHHHHHHHHH-HHhhHHH
Confidence 22222233 3332 334556677778888999999999999999999999888884 444333333332 3348888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 011035 455 IWAGMIFGGTAVQTLILAIITM 476 (495)
Q Consensus 455 ~~~a~~~~~~~~~~~~~~~~~~ 476 (495)
..++.. ++..+..+......+
T Consensus 151 ~~~~~~-~~~~~~~~~~~~~~~ 171 (251)
T PF13440_consen 151 ILLAFI-ISALLALLISFYLLR 171 (251)
T ss_pred HHHHHH-HHHHHHHHHHHHHhc
Confidence 888888 888887776555444
No 45
>COG4267 Predicted membrane protein [Function unknown]
Probab=97.13 E-value=0.24 Score=46.61 Aligned_cols=319 Identities=11% Similarity=0.064 Sum_probs=176.0
Q ss_pred HHHHHHHHHHhHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhh
Q 011035 101 NFGLLLGMASALETLCGQAFGGKKYYMLGVYMQRSWIVLFICCVLLLPLYVFASPVLKLLGQPDDVAELSGVVSLWLLPV 180 (495)
Q Consensus 101 ~~~~~~gl~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~ 180 (495)
...+..|+....+..+|...=++|.+++...+--+..+....+..+.. ++-...++... .|=...+..
T Consensus 73 S~IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~-------~vf~~~~~~si-----~yk~l~~~~ 140 (467)
T COG4267 73 SQIITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGL-------IVFFVNNQYSI-----VYKILACAL 140 (467)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH-------HhhhhcCchhH-----HHHHHHHHH
Confidence 455777888888888888776666666655444333333333322221 11111222211 122233444
Q ss_pred HHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhcCCcCCcc
Q 011035 181 HFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACGGCPRTW 260 (495)
Q Consensus 181 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~ 260 (495)
....+...+...++.+.+|.+...+.-.++..+...+..++-. .+..|..++..++..+.......+..|.-...+.
T Consensus 141 FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~~---~~ie~lLL~~~IGi~~i~~l~~~~Ilr~fk~~~~ 217 (467)
T COG4267 141 FVGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFLK---SPIEGLLLTLDIGIFIILFLLNFYILRYFKSSRR 217 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccc
Confidence 5566677777889999999999999999998888888777665 4899999999999888887777777665111122
Q ss_pred CCCChHhHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCChhHHHH------HHHHHHHHHHHHHHH-----HHHH
Q 011035 261 TGFSMEAFSDLWEFVKLSVASGVMLCLENWYYRVLILMTGNLQNAKIAVD------ALSICMSINGWELMI-----PLSF 329 (495)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~va------~~~~~~~i~~~~~~~-----~~~l 329 (495)
..++.-+ . .+--....+......+...+++.+.=..++++.-.+ -|.+..-...+...+ ...+
T Consensus 218 i~FdFL~--~----~~~y~SLllIg~FY~lgiwid~FifW~~~~~~~Iag~~~~S~lYDvpiF~ayl~~iPs~vvF~i~l 291 (467)
T COG4267 218 IGFDFLL--Y----RRKYPSLLLIGFFYNLGIWIDNFIFWKVPTGIEIAGPFFASPLYDVPIFYAYLFIIPSMVVFLISL 291 (467)
T ss_pred cceehhh--h----hhcchHHHHHHHHHHhHhhhhheeeEecCCCCEeecceecchhhhHHHHHHHHHhcchhheeeeee
Confidence 2333221 1 111122334455566666666655433332221111 122222222222222 1222
Q ss_pred HHHHHHHHHHhh----cCC-------ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcHHHHHHHHHHHHH
Q 011035 330 FAGTGVRVSNEL----GAG-------NGKGARFATIVSVVTSIAIGVFFFILILIFHNELALIFSSSEAILQVVSKMSIL 398 (495)
Q Consensus 330 ~~a~~~~i~~~~----g~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~ 398 (495)
-+...+.--+.+ |.+ +.++.....+..+.-..-+-...++.++++++.+...+.-++. ..+...+
T Consensus 292 ET~F~~~Yk~~y~~I~~g~tl~~I~~~~~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~~----~l~lF~v 367 (467)
T COG4267 292 ETDFQENYKEYYQAIRGGGTLREIENNLKKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSEY----YLDLFYV 367 (467)
T ss_pred eehHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHH----HHHHHHH
Confidence 333333322222 112 2233334444444455556667778888889998887765442 4455556
Q ss_pred HHHHHHHhhHHHHHHHHhhhcCCcchhHHHHHHHHHHhhhHHHHHHH
Q 011035 399 LAFTILLNSVQPVLSGVAVGSGWQSIVAYINLGCYYLIGVPLGILLG 445 (495)
Q Consensus 399 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~i~l~~~l~ 445 (495)
-.++.-.....+.+-++.--..+-+..+..+..- .+.|..+.++..
T Consensus 368 d~lg~s~~i~f~~ll~i~lyfd~r~i~l~~t~~f-li~N~ilT~i~l 413 (467)
T COG4267 368 DVLGVSCQIVFMSLLNIFLYFDYRRIALELTALF-LISNGILTFIFL 413 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHH-HHHhHHHHHHHH
Confidence 6666555555555555555566667666666555 566666776654
No 46
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=90.27 E-value=20 Score=35.29 Aligned_cols=39 Identities=8% Similarity=0.085 Sum_probs=31.8
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcC
Q 011035 345 NGKGARFATIVSVVTSIAIGVFFFILILIFHNELALIFS 383 (495)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 383 (495)
+.++.+++.+++.+.+.+......++..+..-|+...-.
T Consensus 89 ~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~~~~ 127 (386)
T PF05975_consen 89 KESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLMQVY 127 (386)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 557799999999999999998888888777777766333
No 47
>COG4267 Predicted membrane protein [Function unknown]
Probab=66.55 E-value=1.3e+02 Score=29.17 Aligned_cols=135 Identities=15% Similarity=0.100 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHH
Q 011035 325 IPLSFFAGTGVRVSNELGAGNGKGARFATIVSVVTSIAIGVFFFILILIFHNELALIFSSSEAILQVVSKMSILLAFTIL 404 (495)
Q Consensus 325 ~~~~l~~a~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~ 404 (495)
+..+++-...-.+|..+=+++.++....+.-...+....+..++...+ +.+++ ..... =...+...+
T Consensus 76 iTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~vf---------~~~~~--~si~y--k~l~~~~FV 142 (467)
T COG4267 76 ITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIVF---------FVNNQ--YSIVY--KILACALFV 142 (467)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhh---------hhcCc--hhHHH--HHHHHHHHH
Confidence 456666666677777777777777777777666666665555543211 22222 11122 233444556
Q ss_pred HhhHHHHHHHHhhhcCCcchhHHHHHHHHHHhhhHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHhc
Q 011035 405 LNSVQPVLSGVAVGSGWQSIVAYINLGCYYLIGVPLGILLGWVFHQGVMGIWAGMIFGGTAVQTLILAIITMR 477 (495)
Q Consensus 405 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~i~l~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 477 (495)
.++........+.+.+|.+.....-.++ .++...++.++- ..+.+|.-++.. ++..+...+......|
T Consensus 143 ~m~~~Wi~~iFlS~lK~y~~iv~sF~iG-~~~sv~La~~~~---~~~ie~lLL~~~-IGi~~i~~l~~~~Ilr 210 (467)
T COG4267 143 GMSLVWILMIFLSGLKKYKLIVLSFFIG-YVVSVLLARLFL---KSPIEGLLLTLD-IGIFIILFLLNFYILR 210 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH---HhHHHHHHHHHH-HhHHHHHHHHHHHHHH
Confidence 6777888888999999999888888777 577777776654 458889999988 8888776666555544
No 48
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=48.13 E-value=1.1e+02 Score=22.40 Aligned_cols=35 Identities=26% Similarity=0.115 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHH
Q 011035 330 FAGTGVRVSNELGAGNGKGARFATIVSVVTSIAIG 364 (495)
Q Consensus 330 ~~a~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~ 364 (495)
+-.....+...+.+||++++++..+++..++..-.
T Consensus 37 Ai~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~ 71 (82)
T PF04505_consen 37 AIVYSSKVRSRYAAGDYEGARRASRKAKKWSIIAI 71 (82)
T ss_pred HheechhhHHHHHCCCHHHHHHHHHHhHHHHHHHH
Confidence 33344567777888999999999999888775443
No 49
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=37.84 E-value=1.1e+02 Score=30.15 Aligned_cols=25 Identities=20% Similarity=0.161 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 011035 47 FWIESKKLWHIVGPTIFSRMASYSM 71 (495)
Q Consensus 47 ~~~~~~~~~~~~~p~~~~~~~~~~~ 71 (495)
..+..|.+++..+|+.+.-+.+...
T Consensus 238 k~~~~k~Ll~ymiPL~lVY~aEY~I 262 (402)
T PF02487_consen 238 KLKRLKPLLWYMIPLFLVYFAEYFI 262 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446677788889999888888765
No 50
>PF14184 YrvL: Regulatory protein YrvL
Probab=30.65 E-value=2.9e+02 Score=22.35 Aligned_cols=92 Identities=15% Similarity=0.206 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHcCCC-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHccchhHHHHHHHHHHH
Q 011035 134 RSWIVLFICCVLLLPLYVFASPVLKLLGQP-DDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLL 212 (495)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 212 (495)
......+...++.+...+....+++++|-+ +.......-.+....++.|+..+...+...+.-.+-++.. .......
T Consensus 6 ~~i~~~l~~~~v~a~~ff~~~gif~L~Gi~Y~S~~~llLF~li~~~lg~~~e~~~k~l~~~l~~~~~~~~~--~~~l~~~ 83 (132)
T PF14184_consen 6 IFIIIALLLIIVFAIYFFVMVGIFHLLGIEYESVGSLLLFFLIIFVLGLPFELFEKVLLKALLFLRMSRRL--FILLAFI 83 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHH--HHHHHHH
Confidence 334444444444455556666777888754 2333434444555566777777776666665555333332 2334466
Q ss_pred HHHHHHHHHHhhcCC
Q 011035 213 VHLLVTWLFVYKMQL 227 (495)
Q Consensus 213 ~~i~~~~~li~~~~~ 227 (495)
+....++..++..+.
T Consensus 84 id~~~t~~~i~~aD~ 98 (132)
T PF14184_consen 84 IDFLFTWITIYTADE 98 (132)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777775443
No 51
>PTZ00206 amino acid transporter; Provisional
Probab=29.62 E-value=6.1e+02 Score=25.69 Aligned_cols=16 Identities=6% Similarity=0.038 Sum_probs=6.9
Q ss_pred HHHhhhcCCCcchHHH
Q 011035 115 LCGQAFGGKKYYMLGV 130 (495)
Q Consensus 115 ~is~~~~~~~~~~~~~ 130 (495)
..++..+.+++++..+
T Consensus 113 ~~~~~~~~~sY~~la~ 128 (467)
T PTZ00206 113 VAADKTNIRTYEGVAR 128 (467)
T ss_pred HHhccCCCCCHHHHHH
Confidence 3344334444554433
No 52
>PRK09546 zntB zinc transporter; Reviewed
Probab=29.11 E-value=1.4e+02 Score=28.39 Aligned_cols=45 Identities=20% Similarity=0.201 Sum_probs=23.9
Q ss_pred HhhhHHHHHHHHH-hccC-cch-----HHHHHHHHHHHHHHHHHHHHHhccCh
Q 011035 435 LIGVPLGILLGWV-FHQG-VMG-----IWAGMIFGGTAVQTLILAIITMRCDW 480 (495)
Q Consensus 435 ~i~i~l~~~l~~~-~~~g-~~g-----~~~a~~~~~~~~~~~~~~~~~~~~~~ 480 (495)
++.+|+.++.+.+ .+++ +++ .++... +..++.++..+++++|++|
T Consensus 272 ~IflPlT~IaGiyGMNf~~mPel~~~~gy~~~l-~im~~i~~~~~~~fkrk~W 323 (324)
T PRK09546 272 MVFLPTTFLTGLFGVNLGGIPGGGWPFGFSIFC-LLLVVLIGGVAWWLKRSKW 323 (324)
T ss_pred HHHHHHHHHHhhhccccCCCCCcCCcchHHHHH-HHHHHHHHHHHHHHHhccc
Confidence 4667888876543 1221 222 233333 3444555566677787777
No 53
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=26.76 E-value=1.9e+02 Score=27.44 Aligned_cols=51 Identities=20% Similarity=0.169 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhccCc---ch-----HHHHHHHHHHHHHHHHHHHHHhccCh
Q 011035 426 AYINLGCYYLIGVPLGILLGWVFHQGV---MG-----IWAGMIFGGTAVQTLILAIITMRCDW 480 (495)
Q Consensus 426 ~~~~~~~~~~i~i~l~~~l~~~~~~g~---~g-----~~~a~~~~~~~~~~~~~~~~~~~~~~ 480 (495)
-..++++ ++..|+.++.+.+ +++. ++ .++... ...++.++..+++++|++|
T Consensus 259 k~LTvvt--~IflP~t~IaGiy-GMNf~~mP~l~~~~gy~~~l-~~m~~i~~~~~~~fkrk~W 317 (318)
T TIGR00383 259 KILTVVS--TIFIPLTFIAGIY-GMNFKFMPELNWKYGYPAVL-IVMAVIALGPLIYFRRKGW 317 (318)
T ss_pred HHHHHHH--HHHHHHHHHHHHH-hCCcccCccccchhHHHHHH-HHHHHHHHHHHHHHHHcCC
Confidence 3344444 5667777775532 2222 11 223333 3444555666777888788
No 54
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=25.98 E-value=2.8e+02 Score=24.69 Aligned_cols=37 Identities=14% Similarity=0.174 Sum_probs=17.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcC
Q 011035 125 YYMLGVYMQRSWIVLFICCVLLLPLYVFASPVLKLLG 161 (495)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 161 (495)
++...+.+..++...+.+-++.+++..+..++..+++
T Consensus 143 y~k~~k~~~~gi~aml~Vf~LF~lvmt~g~d~m~fl~ 179 (230)
T PF03904_consen 143 YQKRQKSMYKGIGAMLFVFMLFALVMTIGSDFMDFLH 179 (230)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhcccchhhhh
Confidence 3344444444444333333333444556666666665
No 55
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=25.68 E-value=5.4e+02 Score=23.78 Aligned_cols=33 Identities=3% Similarity=-0.144 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHH
Q 011035 322 ELMIPLSFFAGTGVRVSNELGAGNGKGARFATI 354 (495)
Q Consensus 322 ~~~~~~~l~~a~~~~i~~~~g~~~~~~~~~~~~ 354 (495)
...+...++.......-+...++|.++.++...
T Consensus 109 l~~~~~~~~s~~~h~adk~ae~gn~k~i~~~~~ 141 (265)
T TIGR00822 109 LTIFVRTITVLFQHAADKAAKEANTAAISRLHV 141 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHhHHHHH
Confidence 334445556666666667777888888765533
No 56
>PF10160 Tmemb_40: Predicted membrane protein; InterPro: IPR018781 This entry represents 280 amino acid region found in a group of proteins conserved from plants to humans. These are predicted to be membrane proteins, but apart from that their function is unknown.
Probab=25.04 E-value=5.4e+02 Score=23.58 Aligned_cols=84 Identities=10% Similarity=0.024 Sum_probs=48.5
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhcCCcc
Q 011035 344 GNGKGARFATIVSVVTSIAIGVFFFILILIFHNELALIFSSSEAILQVVSKMSILLAFTILLNSVQPVLSGVAVGSGWQS 423 (495)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~ 423 (495)
+..+..++..-.+..+++...+.=++..+.+++ ..++.++.+....+.. .-|+.-..++..++......-....+.+
T Consensus 109 ds~~Si~r~l~iT~~is~~~s~~Q~ilef~~~d--~~l~~~~~~~~~hgg~-~fW~~~s~~f~~vY~~I~~L~~~r~r~~ 185 (261)
T PF10160_consen 109 DSRSSIKRTLLITGLISLADSLTQAILEFGFGD--VPLFIENFDLFGHGGW-GFWFISSLVFALVYGFILILTPLRWRDR 185 (261)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHheeecCc--ccccCCCCCcCCcCCe-ehHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 345666666666666666666666666666665 5566655555544433 3444445555555555544456666666
Q ss_pred hhHHHHH
Q 011035 424 IVAYINL 430 (495)
Q Consensus 424 ~~~~~~~ 430 (495)
.|.+-++
T Consensus 186 LPar~SF 192 (261)
T PF10160_consen 186 LPARPSF 192 (261)
T ss_pred CCCCccH
Confidence 5554443
No 57
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=24.52 E-value=3e+02 Score=20.43 Aligned_cols=40 Identities=13% Similarity=0.128 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc--cChHHHHHHHHHHHHHHH
Q 011035 60 PTIFSRMASYSMFVITQAFAGH--LGDLELAAISIANTVVVA 99 (495)
Q Consensus 60 p~~~~~~~~~~~~~i~~~~i~~--lg~~~~~~~~~~~~~~~~ 99 (495)
|.++..++.-+.-.+..++.+. ..-.++|..+++.-+..+
T Consensus 35 p~m~~lmllGL~WiVvyYi~~~~i~pi~~lG~WN~~IGfg~~ 76 (87)
T PF06781_consen 35 PLMLGLMLLGLLWIVVYYISGGQIPPIPDLGNWNLAIGFGLM 76 (87)
T ss_pred HHHHHHHHHHHHHHhhhhcccCCCCCcccccchHHHHHHHHH
Confidence 4555555555555555555554 356778877776655443
No 58
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=23.19 E-value=2.8e+02 Score=20.17 Aligned_cols=32 Identities=6% Similarity=0.030 Sum_probs=23.7
Q ss_pred HHHHhhhcCCCcchHHHHHHHHHHHHHHHHHH
Q 011035 114 TLCGQAFGGKKYYMLGVYMQRSWIVLFICCVL 145 (495)
Q Consensus 114 ~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (495)
..+-..+.+||.+++++.-+++-.++.+..++
T Consensus 42 ~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~ 73 (82)
T PF04505_consen 42 SKVRSRYAAGDYEGARRASRKAKKWSIIAIII 73 (82)
T ss_pred hhhHHHHHCCCHHHHHHHHHHhHHHHHHHHHH
Confidence 45566777899999999998888877554333
No 59
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=21.89 E-value=2.1e+02 Score=31.57 Aligned_cols=41 Identities=5% Similarity=-0.128 Sum_probs=16.8
Q ss_pred HHHHHhHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHH
Q 011035 106 LGMASALETLCGQAFGGKKYYMLGVYMQRSWIVLFICCVLL 146 (495)
Q Consensus 106 ~gl~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (495)
.++.-.+...++...|.+|..-...+-...+-+.+.++++.
T Consensus 979 TSIPDlisSvivArkG~gdMAVan~iGSNIFnIllgLGlPW 1019 (1096)
T TIGR00927 979 TSIPDLITSVIVARKGLGDMAVSSSVGSNIFDITVGLPVPW 1019 (1096)
T ss_pred cccHHHHHHHHHHHccCCcceeeeccccchheeeeeccHHH
Confidence 33333333444444454444333333344443333334333
No 60
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=21.58 E-value=7.4e+02 Score=23.92 Aligned_cols=34 Identities=9% Similarity=0.095 Sum_probs=23.1
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHccchhHH
Q 011035 170 SGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVI 203 (495)
Q Consensus 170 ~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 203 (495)
......|+..+........+...+++...+.+..
T Consensus 263 ~~~~v~~~~~a~l~~~~G~iid~~l~~~~~~~~~ 296 (344)
T PF04123_consen 263 LYGSVPWLALAALIASLGKIIDEYLRRDFRLWRY 296 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCcchHHH
Confidence 4455677777777777777888887776654433
No 61
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=21.58 E-value=2.3e+02 Score=17.95 Aligned_cols=9 Identities=11% Similarity=0.243 Sum_probs=4.0
Q ss_pred ChHHHHHHH
Q 011035 479 DWDREAEKA 487 (495)
Q Consensus 479 ~~~~~~~~~ 487 (495)
+..++..+.
T Consensus 31 ~~~~~l~~~ 39 (46)
T PF04995_consen 31 RLRKELKRL 39 (46)
T ss_pred HHHHHHHHH
Confidence 444444443
No 62
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=21.04 E-value=2.3e+02 Score=17.84 Aligned_cols=12 Identities=17% Similarity=0.210 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 011035 455 IWAGMIFGGTAVQ 467 (495)
Q Consensus 455 ~~~a~~~~~~~~~ 467 (495)
+|.+.. ++-++.
T Consensus 8 VW~sYg-~t~l~l 19 (45)
T TIGR03141 8 VWLAYG-ITALVL 19 (45)
T ss_pred HHHHHH-HHHHHH
Confidence 344444 443433
No 63
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=20.89 E-value=7.7e+02 Score=24.99 Aligned_cols=83 Identities=16% Similarity=0.129 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhhhcCCcchhHHHHHHHH--HHhhhHHHHHHHHHhc-cCcchHHHHHHHHHHHHH
Q 011035 391 VVSKMSILLAFTILLNSVQPVLSGVAVGSGWQSIVAYINLGCY--YLIGVPLGILLGWVFH-QGVMGIWAGMIFGGTAVQ 467 (495)
Q Consensus 391 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~--~~i~i~l~~~l~~~~~-~g~~g~~~a~~~~~~~~~ 467 (495)
...+.++-++.+..+-++..+.....--.++.+.........+ .++..|+.=.+. .. +|-..+.+... ..-++.
T Consensus 132 ~~~R~lqGl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc--~s~~GW~sifY~~g-~~g~i~ 208 (466)
T KOG2532|consen 132 LVLRFLQGLGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLC--ESSLGWPSIFYVFG-IVGLIW 208 (466)
T ss_pred HHHHHHhHHHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh--ccCCCCchHHHHHH-HHHHHH
Confidence 3455555566666666666666666666666666555444332 344555554444 33 78888888877 666666
Q ss_pred HHHHHHHHh
Q 011035 468 TLILAIITM 476 (495)
Q Consensus 468 ~~~~~~~~~ 476 (495)
.++..++.+
T Consensus 209 ~~~w~~~~~ 217 (466)
T KOG2532|consen 209 FILWFLFYS 217 (466)
T ss_pred HHHHHHHhc
Confidence 665555555
No 64
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=20.71 E-value=2e+02 Score=27.45 Aligned_cols=44 Identities=20% Similarity=0.323 Sum_probs=24.4
Q ss_pred HhhhHHHHHHHHH-hccC-c------chHHHHHHHHHHHHHHHHHHHHHhccCh
Q 011035 435 LIGVPLGILLGWV-FHQG-V------MGIWAGMIFGGTAVQTLILAIITMRCDW 480 (495)
Q Consensus 435 ~i~i~l~~~l~~~-~~~g-~------~g~~~a~~~~~~~~~~~~~~~~~~~~~~ 480 (495)
++.+|..++.+.+ .+++ + +|-|++.. ..++.+++.+++++|++|
T Consensus 270 ~iflPpTlIagiyGMNf~~mPel~~~~Gy~~~l~--~m~~~~~~~~~~frrk~W 321 (322)
T COG0598 270 TIFLPPTLITGFYGMNFKGMPELDWPYGYPIALI--LMLLLALLLYLYFRRKGW 321 (322)
T ss_pred HHHHhhHHHHcccccCCCCCcCCCCcccHHHHHH--HHHHHHHHHHHHHHhcCc
Confidence 5667777776643 1222 1 14444433 444555666777777777
No 65
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=20.36 E-value=6.5e+02 Score=23.97 Aligned_cols=45 Identities=13% Similarity=0.138 Sum_probs=22.8
Q ss_pred HhhhHHHHHHHHH-hccC-cch-----HHHHHHHHHHHHHHHHHHHHHhccCh
Q 011035 435 LIGVPLGILLGWV-FHQG-VMG-----IWAGMIFGGTAVQTLILAIITMRCDW 480 (495)
Q Consensus 435 ~i~i~l~~~l~~~-~~~g-~~g-----~~~a~~~~~~~~~~~~~~~~~~~~~~ 480 (495)
++..|..++.+.+ .++. +++ .++... ...++.+++.+++++|++|
T Consensus 264 ~if~pptliagiyGMNf~~mP~~~~~~g~~~~l-~~~~~~~~~~~~~f~rk~W 315 (316)
T PRK11085 264 VVFLPPTLVASSYGMNFEFMPELKWSFGYPGAI-ILMILAGLAPYLYFKRKNW 315 (316)
T ss_pred HHHHHHHHHHhhcccccCCCCCCCCcHHHHHHH-HHHHHHHHHHHHHHHHccc
Confidence 5667777775532 1221 222 222223 3344445556677777777
Done!