Query 011035
Match_columns 495
No_of_seqs 246 out of 2120
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 19:27:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011035.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011035hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 100.0 7.7E-49 2.6E-53 395.1 35.7 431 45-479 5-447 (460)
2 3mkt_A Multi antimicrobial ext 99.8 1.2E-19 4.1E-24 182.0 20.8 205 49-254 235-446 (460)
3 1pw4_A Glycerol-3-phosphate tr 93.0 6.5 0.00022 37.7 35.9 22 448-470 408-429 (451)
4 4aps_A DI-OR tripeptide H+ sym 90.9 12 0.00042 36.3 25.5 53 415-469 414-466 (491)
5 4ev6_A Magnesium transport pro 35.4 56 0.0019 30.0 5.9 43 435-480 287-338 (339)
6 2k1k_A Ephrin type-A receptor 28.8 64 0.0022 18.7 3.2 20 229-248 13-32 (38)
7 3o7q_A L-fucose-proton symport 28.2 3.6E+02 0.012 24.9 34.2 38 54-91 28-67 (438)
8 2ks1_B Epidermal growth factor 20.1 1.5E+02 0.0053 17.8 4.6 26 229-254 13-38 (44)
9 2l2t_A Receptor tyrosine-prote 18.7 1.7E+02 0.0058 17.6 3.9 7 248-254 31-37 (44)
10 2jwa_A Receptor tyrosine-prote 16.4 1.7E+02 0.006 17.6 3.3 10 245-254 29-38 (44)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=100.00 E-value=7.7e-49 Score=395.13 Aligned_cols=431 Identities=19% Similarity=0.366 Sum_probs=395.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCC
Q 011035 45 RRFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKK 124 (495)
Q Consensus 45 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~~~~~ 124 (495)
...++..|++++.++|.++++++..+.+.+|+.+++|+|++++|+++++.++..+ ...+..|++.+..+.+++++|++|
T Consensus 5 ~~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~-~~~~~~g~~~~~~~~is~~~g~~~ 83 (460)
T 3mkt_A 5 HRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLP-SILFGVGLLMALVPVVAQLNGAGR 83 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHH-HHHHHHHHHHHHGGGCTTTTSSSS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4456789999999999999999999999999999999999999999999999877 777889999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHccchhHHH
Q 011035 125 YYMLGVYMQRSWIVLFICCVLLLPLYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIA 204 (495)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 204 (495)
+++.++.+++++.+.+.+++++.+++.+.++++..++.+++..+.+..|+++..++.++..+.....+.+++.||++.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 163 (460)
T 3mkt_A 84 QHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAM 163 (460)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 99999999999999999998877667788888888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhh-c---CCccchHHHHHHHHHHHHHHHHHHHHhcCCcCCc---cCCCChHhHhhHHHHHHH
Q 011035 205 WVSLASLLVHLLVTWLFVYK-M---QLGLIGTAITLSFSWWVLIFGMFGYVACGGCPRT---WTGFSMEAFSDLWEFVKL 277 (495)
Q Consensus 205 ~~~~~~~~~~i~~~~~li~~-~---~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 277 (495)
..++++.++|+++++++++. + ++|+.|+++++.+++.+..++..++.++++...+ +.++...+++..|+++++
T Consensus 164 ~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 243 (460)
T 3mkt_A 164 VIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRL 243 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHH
Confidence 99999999999999999975 3 6899999999999999999998888876632221 122234455788999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHH
Q 011035 278 SVASGVMLCLENWYYRVLILMTGNLQNAKIAVDALSICMSINGWELMIPLSFFAGTGVRVSNELGAGNGKGARFATIVSV 357 (495)
Q Consensus 278 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~i~~~~~~~~~~l~~a~~~~i~~~~g~~~~~~~~~~~~~~~ 357 (495)
++|.++++..+.+.+.+++.+++++| +.++++|++++++.++..++..+++++..|.+++++|++|.++.++..+++.
T Consensus 244 ~~p~~~~~~~~~~~~~~~~~~~~~~g--~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~ 321 (460)
T 3mkt_A 244 GFPVAAALFFEVTLFAVVALLVAPLG--STVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGL 321 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99999999999999999999999997 4589999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhcCCcchhHHHHHHHHHHhh
Q 011035 358 VTSIAIGVFFFILILIFHNELALIFSSSEAILQVVSKMSILLAFTILLNSVQPVLSGVAVGSGWQSIVAYINLGCYYLIG 437 (495)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~ 437 (495)
++.+.+++++++++.++++++..+|++|+++.+.+..++++++++.++++++.+..+++++.||++.+++.++++.|+++
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 401 (460)
T 3mkt_A 322 MTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLG 401 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998889999999999999999999999999999999999999999999978999
Q ss_pred hHHHHHHHHH----hc-cCcchHHHHHHHHHHHHHHHHHHHHHhccC
Q 011035 438 VPLGILLGWV----FH-QGVMGIWAGMIFGGTAVQTLILAIITMRCD 479 (495)
Q Consensus 438 i~l~~~l~~~----~~-~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~ 479 (495)
+|+.+++... ++ +|..|+|++.. +++.+..++..+.++|..
T Consensus 402 i~l~~~l~~~~~~~~~~~G~~G~~~a~~-~~~~~~~~~~~~~~~~~~ 447 (460)
T 3mkt_A 402 LPTGYILGMTNWLTEQPLGAKGFWLGFI-IGLSAAALMLGQRLYWLQ 447 (460)
T ss_dssp HHHHHHHHHHHTSSCCSSHHHHHHHHHH-HHHHHHHHHHHSSSSSSC
T ss_pred HHHHHHHHhhhhccccccCchhHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 9999999844 34 99999999999 999999888777766653
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.84 E-value=1.2e-19 Score=182.05 Aligned_cols=205 Identities=14% Similarity=0.106 Sum_probs=189.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcchH
Q 011035 49 IESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYML 128 (495)
Q Consensus 49 ~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~~~~~~~~~ 128 (495)
+..|++++.++|.+++++...+...+|+.+++++|++++|+++++.++.++ ...+..+++++..|.+++.+|++|+++.
T Consensus 235 ~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~-~~~~~~~~~~a~~p~i~~~~g~~~~~~~ 313 (460)
T 3mkt_A 235 KELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSL-VFMFPMSIGAAVSIRVGHKLGEQDTKGA 313 (460)
T ss_dssp SSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHSSCCCTT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 456789999999999999999999999999999999999999999999998 7789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHccchhHHHHHH
Q 011035 129 GVYMQRSWIVLFICCVLLLPL-YVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVS 207 (495)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 207 (495)
++..+.+..+...++++++++ +.+.+++..++.++++..+.+..++++..++.++.++..+..+.+++.||++.+++.+
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 393 (460)
T 3mkt_A 314 AIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRT 393 (460)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 999999999999999888765 7888899998888888888899999999999999999999999999999999999999
Q ss_pred HHHH-HHHHHHHHHHHhh----cC-CccchHHHHHHHHHHHHHHHHHHHHhcC
Q 011035 208 LASL-LVHLLVTWLFVYK----MQ-LGLIGTAITLSFSWWVLIFGMFGYVACG 254 (495)
Q Consensus 208 ~~~~-~~~i~~~~~li~~----~~-~g~~g~a~a~~i~~~~~~~~~~~~~~~~ 254 (495)
+++. ++++++++++... ++ +|..|+++|+.+++.+.+++..++.+|+
T Consensus 394 ~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~ 446 (460)
T 3mkt_A 394 FISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWL 446 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSS
T ss_pred HHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9987 9999999999986 66 9999999999999999888776665544
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=93.04 E-value=6.5 Score=37.66 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=11.9
Q ss_pred hccCcchHHHHHHHHHHHHHHHH
Q 011035 448 FHQGVMGIWAGMIFGGTAVQTLI 470 (495)
Q Consensus 448 ~~~g~~g~~~a~~~~~~~~~~~~ 470 (495)
...|....++... +..++..++
T Consensus 408 ~~~g~~~~~~~~~-~~~~~~~~~ 429 (451)
T 1pw4_A 408 DFFGWDGGFMVMI-GGSILAVIL 429 (451)
T ss_dssp HSSCSHHHHHHHH-HHHHHHHHH
T ss_pred HhcCcHHHHHHHH-HHHHHHHHH
Confidence 4557666666555 444444443
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=90.93 E-value=12 Score=36.29 Aligned_cols=53 Identities=9% Similarity=-0.039 Sum_probs=21.4
Q ss_pred HhhhcCCcchhHHHHHHHHHHhhhHHHHHHHHHhccCcchHHHHHHHHHHHHHHH
Q 011035 415 VAVGSGWQSIVAYINLGCYYLIGVPLGILLGWVFHQGVMGIWAGMIFGGTAVQTL 469 (495)
Q Consensus 415 ~l~~~g~~~~~~~~~~~~~~~i~i~l~~~l~~~~~~g~~g~~~a~~~~~~~~~~~ 469 (495)
..-...+.......+... .+.......+.....+.+....++... ...++..+
T Consensus 414 ~~p~~~~g~~~g~~~~~~-~~g~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 466 (491)
T 4aps_A 414 LAPKAFNSQMMSMWFLSS-SVGSALNAQLVTLYNAKSEVAYFSYFG-LGSVVLGI 466 (491)
T ss_dssp HTTTTCSSSSTHHHHHHH-HHHHHHHHHHGGGGGGSSTTHHHHHTH-HHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcccHHHHHHHHH-HHHHHHHH
Confidence 333333444444444444 233333333333333445555555444 44444333
No 5
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=35.38 E-value=56 Score=30.03 Aligned_cols=43 Identities=21% Similarity=0.305 Sum_probs=25.6
Q ss_pred HhhhHHHHHHHHHhccCc---------chHHHHHHHHHHHHHHHHHHHHHhccCh
Q 011035 435 LIGVPLGILLGWVFHQGV---------MGIWAGMIFGGTAVQTLILAIITMRCDW 480 (495)
Q Consensus 435 ~i~i~l~~~l~~~~~~g~---------~g~~~a~~~~~~~~~~~~~~~~~~~~~~ 480 (495)
++.+|+.++.+.+ +++. +|-|+ .. ...++.+++.+++++|++|
T Consensus 287 ~IflP~T~IaGiy-GMNf~~mPel~~~~gy~~-~l-~~m~~~~~~~~~~fkrk~W 338 (339)
T 4ev6_A 287 TIFAVPMWITGIY-GMNFSYLPLANNPQGFWL-VM-ALMVVIIMIFVYIFRRSGW 338 (339)
T ss_dssp HHSSHHHHHHHHT-TCCCSCCTTSSCTTHHHH-HH-HHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhhc-cCcCCCCCCccCchHHHH-HH-HHHHHHHHHHHHHHHHcCC
Confidence 5678888876643 2222 23333 33 4445556667778888888
No 6
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=28.80 E-value=64 Score=18.73 Aligned_cols=20 Identities=10% Similarity=0.075 Sum_probs=8.9
Q ss_pred cchHHHHHHHHHHHHHHHHH
Q 011035 229 LIGTAITLSFSWWVLIFGMF 248 (495)
Q Consensus 229 ~~g~a~a~~i~~~~~~~~~~ 248 (495)
+.|..++.+++-.+...+.+
T Consensus 13 IAGiVvG~v~gv~li~~l~~ 32 (38)
T 2k1k_A 13 IVAVIFGLLLGAALLLGILV 32 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred eeeeehHHHHHHHHHHHHHH
Confidence 34455555554444433333
No 7
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=28.17 E-value=3.6e+02 Score=24.87 Aligned_cols=38 Identities=8% Similarity=0.066 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc--ChHHHHHHH
Q 011035 54 LWHIVGPTIFSRMASYSMFVITQAFAGHL--GDLELAAIS 91 (495)
Q Consensus 54 ~~~~~~p~~~~~~~~~~~~~i~~~~i~~l--g~~~~~~~~ 91 (495)
+.....-..+..+...........+..++ ++.+.+...
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~ 67 (438)
T 3o7q_A 28 FALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQ 67 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHH
Confidence 33444444444444445555555555555 455555443
No 8
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=20.10 E-value=1.5e+02 Score=17.79 Aligned_cols=26 Identities=8% Similarity=0.068 Sum_probs=10.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhcC
Q 011035 229 LIGTAITLSFSWWVLIFGMFGYVACG 254 (495)
Q Consensus 229 ~~g~a~a~~i~~~~~~~~~~~~~~~~ 254 (495)
+.+..++-++.-.+..+..+++++++
T Consensus 13 IA~gVVgGv~~~~ii~~~~~~~~RRr 38 (44)
T 2ks1_B 13 IATGMVGALLLLLVVALGIGLFMRRR 38 (44)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEeehhHHHHHHHHHHHHHHHHhhhh
Confidence 33334443333333334444444444
No 9
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=18.67 E-value=1.7e+02 Score=17.63 Aligned_cols=7 Identities=29% Similarity=0.083 Sum_probs=2.8
Q ss_pred HHHHhcC
Q 011035 248 FGYVACG 254 (495)
Q Consensus 248 ~~~~~~~ 254 (495)
+++++++
T Consensus 31 ~~~~RRR 37 (44)
T 2l2t_A 31 AVYVRRK 37 (44)
T ss_dssp HHHHHTT
T ss_pred HHHhhhh
Confidence 3344443
No 10
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=16.44 E-value=1.7e+02 Score=17.57 Aligned_cols=10 Identities=0% Similarity=-0.390 Sum_probs=4.4
Q ss_pred HHHHHHHhcC
Q 011035 245 FGMFGYVACG 254 (495)
Q Consensus 245 ~~~~~~~~~~ 254 (495)
+...+|++|+
T Consensus 29 l~~~~~~RRR 38 (44)
T 2jwa_A 29 VVFGILIKRR 38 (44)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHhheehh
Confidence 3334455544
Done!