Query 011035
Match_columns 495
No_of_seqs 246 out of 2120
Neff 10.4
Searched_HMMs 13730
Date Mon Mar 25 19:27:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011035.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011035hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 49.5 77 0.0056 27.3 19.7 25 227-251 407-431 (447)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 39.8 1.1E+02 0.0079 26.2 37.1 26 448-474 405-430 (447)
3 d2iuba2 f.17.3.1 (A:286-349) M 6.4 1.2E+02 0.0088 18.1 1.9 10 435-444 14-23 (64)
4 d1nkzb_ f.3.1.1 (B:) Light-har 5.6 2.5E+02 0.018 15.0 4.2 34 345-378 7-40 (41)
5 d1lghb_ f.3.1.1 (B:) Light-har 5.5 2E+02 0.015 15.8 2.2 33 345-377 10-42 (43)
6 d2r6gg1 f.58.1.1 (G:7-296) Mal 4.9 6.9E+02 0.05 19.4 8.7 49 337-385 185-233 (290)
7 d1pv7a_ f.38.1.2 (A:) Lactose 3.4 9.4E+02 0.068 18.7 38.4 44 52-95 7-53 (417)
8 d1jo5a_ f.3.1.1 (A:) Light-har 3.0 2.6E+02 0.019 15.7 1.3 33 345-377 15-47 (48)
9 d1m56d_ f.23.8.1 (D:) Bacteria 2.9 4.6E+02 0.034 14.1 4.3 24 341-364 4-27 (42)
10 d1ijdb_ f.3.1.1 (B:) Light-har 2.7 4.6E+02 0.034 13.8 4.1 32 345-376 8-39 (40)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=49.46 E-value=77 Score=27.25 Aligned_cols=25 Identities=8% Similarity=0.032 Sum_probs=12.2
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHH
Q 011035 227 LGLIGTAITLSFSWWVLIFGMFGYV 251 (495)
Q Consensus 227 ~g~~g~a~a~~i~~~~~~~~~~~~~ 251 (495)
.|..+..+.......+..++.....
T Consensus 407 ~g~~~~~~~~~~~~~~~~~~~~~~~ 431 (447)
T d1pw4a_ 407 FGWDGGFMVMIGGSILAVILLIVVM 431 (447)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHH
Confidence 4655555555444444444444433
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=39.79 E-value=1.1e+02 Score=26.18 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=14.5
Q ss_pred hccCcchHHHHHHHHHHHHHHHHHHHH
Q 011035 448 FHQGVMGIWAGMIFGGTAVQTLILAII 474 (495)
Q Consensus 448 ~~~g~~g~~~a~~~~~~~~~~~~~~~~ 474 (495)
...|..+..+... ...++..++....
T Consensus 405 ~~~g~~~~~~~~~-~~~~~~~~~~~~~ 430 (447)
T d1pw4a_ 405 DFFGWDGGFMVMI-GGSILAVILLIVV 430 (447)
T ss_dssp HSSCSHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHhChHHHHHHHH-HHHHHHHHHHHHH
Confidence 5667776666555 5555554444333
No 3
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=6.44 E-value=1.2e+02 Score=18.11 Aligned_cols=10 Identities=30% Similarity=0.408 Sum_probs=5.1
Q ss_pred HhhhHHHHHH
Q 011035 435 LIGVPLGILL 444 (495)
Q Consensus 435 ~i~i~l~~~l 444 (495)
++.+|+.++.
T Consensus 14 ~iflP~t~i~ 23 (64)
T d2iuba2 14 TIFMPLTFIA 23 (64)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 3455555543
No 4
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=5.59 E-value=2.5e+02 Score=14.98 Aligned_cols=34 Identities=9% Similarity=-0.009 Sum_probs=25.4
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011035 345 NGKGARFATIVSVVTSIAIGVFFFILILIFHNEL 378 (495)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 378 (495)
+.|+..+....+.+....+.+..=++.+...+|+
T Consensus 7 eaEElHk~vIdGtRvF~~iA~~AH~La~~~tPWL 40 (41)
T d1nkzb_ 7 QSEELHKYVIDGTRVFLGLALVAHFLAFSATPWL 40 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTT
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhCccc
Confidence 4577788888888888888877777766666653
No 5
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=5.51 E-value=2e+02 Score=15.76 Aligned_cols=33 Identities=6% Similarity=0.061 Sum_probs=18.4
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011035 345 NGKGARFATIVSVVTSIAIGVFFFILILIFHNE 377 (495)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (495)
+.++..+.+..++..-..+.+..=++.+...|+
T Consensus 10 EA~EfH~~~~~g~~~F~~iAvvAHiLvw~wrPW 42 (43)
T d1lghb_ 10 EAIAVHDQFKTTFSAFIILAAVAHVLVWVWKPW 42 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 345556666666666666655555555444443
No 6
>d2r6gg1 f.58.1.1 (G:7-296) Maltose transport system permease protein MalG {Escherichia coli [TaxId: 562]}
Probab=4.88 E-value=6.9e+02 Score=19.39 Aligned_cols=49 Identities=14% Similarity=0.095 Sum_probs=31.1
Q ss_pred HHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCc
Q 011035 337 VSNELGAGNGKGARFATIVSVVTSIAIGVFFFILILIFHNELALIFSSS 385 (495)
Q Consensus 337 i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~ 385 (495)
-++..|++..+..++...-.++=+...+..++....+-.-....++.++
T Consensus 185 AA~~~GAs~~~~f~~I~lPl~~p~i~~~~il~fi~~~~~f~~~~~~~~~ 233 (290)
T d2r6gg1 185 AAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEVPVASLLLRD 233 (290)
T ss_dssp HHHHTTCCHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCCHHHHHHCCS
T ss_pred hHhhcCCCHHHHHHHHHHHhhhhhhhhHHHHHhhhhccccccceeccCC
Confidence 5666788888888888888887777777666654443222233444443
No 7
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=3.36 E-value=9.4e+02 Score=18.66 Aligned_cols=44 Identities=11% Similarity=0.041 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-c--ChHHHHHHHHHHH
Q 011035 52 KKLWHIVGPTIFSRMASYSMFVITQAFAGH-L--GDLELAAISIANT 95 (495)
Q Consensus 52 ~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-l--g~~~~~~~~~~~~ 95 (495)
|+.+.++.-..+..+...........++.+ + ++.++|.......
T Consensus 7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~ 53 (417)
T d1pv7a_ 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAIS 53 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHH
Confidence 456666666666666655555444444443 3 4556655444333
No 8
>d1jo5a_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=2.98 E-value=2.6e+02 Score=15.73 Aligned_cols=33 Identities=6% Similarity=0.067 Sum_probs=19.0
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011035 345 NGKGARFATIVSVVTSIAIGVFFFILILIFHNE 377 (495)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (495)
+-++..+.+-.++..-..+.+..=++.+...|+
T Consensus 15 EA~E~H~~~~~g~~~F~~iAvvAH~L~w~wrPW 47 (48)
T d1jo5a_ 15 QAQELHSVYMSGLWLFSAVAIVAHLAVYIWRPW 47 (48)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 345556666666666666666555555555544
No 9
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=2.86 E-value=4.6e+02 Score=14.06 Aligned_cols=24 Identities=8% Similarity=-0.226 Sum_probs=11.6
Q ss_pred hcCCChhhHHHHHHHHHHHHHHHH
Q 011035 341 LGAGNGKGARFATIVSVVTSIAIG 364 (495)
Q Consensus 341 ~g~~~~~~~~~~~~~~~~~~~~~~ 364 (495)
.|+=|.+..++.+.--+++..-..
T Consensus 4 HG~MDi~vQEKTF~gFik~~t~~~ 27 (42)
T d1m56d_ 4 AGSMDITQQEKTFAGFVRMVTWAA 27 (42)
T ss_dssp TTCSCCHHHHHHHHHHHHHHHHHH
T ss_pred CCccchHHHHHHHHHHHHHHHHHH
Confidence 344455555555555444444333
No 10
>d1ijdb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=2.74 E-value=4.6e+02 Score=13.76 Aligned_cols=32 Identities=9% Similarity=0.066 Sum_probs=21.6
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011035 345 NGKGARFATIVSVVTSIAIGVFFFILILIFHN 376 (495)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (495)
+.|+..+....+.+....+.+..=++.+...+
T Consensus 8 eaEElHk~vIdGtRvF~~iA~~AH~La~~~tP 39 (40)
T d1ijdb_ 8 QAEELHKHVIDGTRVFLVIAAIAHFLAFTLTP 39 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHhcCC
Confidence 45777788888888877777666555554443
Done!