BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011036
(495 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|359485187|ref|XP_002279096.2| PREDICTED: putative methyltransferase NSUN6-like [Vitis vinifera]
Length = 590
Score = 786 bits (2031), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/493 (76%), Positives = 422/493 (85%), Gaps = 2/493 (0%)
Query: 1 MDLSGRYSYSPLLRWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDV 60
MD S RY Y+P+LRWNPQVE YF +AYG HFSRI++AL RPSCYSCIRVNTLK+T+D V
Sbjct: 26 MDPSDRYCYNPVLRWNPQVEAYFSKAYGPHHFSRITQALARPSCYSCIRVNTLKSTSDAV 85
Query: 61 IQKLLAIIQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGYEPD 120
I+KLLAIIQ + + S K L+ G+IS+ Q+PGL+YVVFV+GSGPHTI+YGYE D
Sbjct: 86 IEKLLAIIQET--ELGNTLDSQKKSLETGSISKCQLPGLDYVVFVRGSGPHTIEYGYEID 143
Query: 121 KPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGIT 180
+PPKEVIVSRKCAEAVLRGAQVYVPGV+ACSSHVEKGDVVAVSVAVEQP DGGWG+GIT
Sbjct: 144 RPPKEVIVSRKCAEAVLRGAQVYVPGVLACSSHVEKGDVVAVSVAVEQPGTDGGWGVGIT 203
Query: 181 RGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVLE 240
RGTVLQG QTDPY+FER+ LYIGQG MMSRAGIFRAS GIAVDM+NR+F+LPSF+DVLE
Sbjct: 204 RGTVLQGQQTDPYHFERNALYIGQGATMMSRAGIFRASGGIAVDMNNRVFKLPSFHDVLE 263
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
GEIFLQNLPSIVTAHALDPQ+ ERILDMCAAPGGKTTAIA L++D+GEV+AVDRSHNKVM
Sbjct: 264 GEIFLQNLPSIVTAHALDPQQDERILDMCAAPGGKTTAIAILMKDQGEVIAVDRSHNKVM 323
Query: 301 DIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEV 360
DIQKLAAEMGL CITTYKLDALKAV R NESND KD +T Q+SDS +L E
Sbjct: 324 DIQKLAAEMGLHCITTYKLDALKAVCRSNESNDMTTPSCRKDAEGVTLQSSDSPRLQMEK 383
Query: 361 PSIAAEGLNGDKSCKEKVSNEKGVERTYVSKADTRKNMRRMRNGPGRNQCLGGRAENSKG 420
+ E D +C+E V N +G +RTY SKAD RKN+RRMRNGPGRNQ +GGR E SKG
Sbjct: 384 NQCSTEAFAADFACQENVINGEGNQRTYTSKADIRKNIRRMRNGPGRNQGMGGRVEKSKG 443
Query: 421 FSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
FSPNSFDRVLLDAPCSALGLRPRLFA EETI+SLRNH KYQRRMFDQAVQLVRPGG+IVY
Sbjct: 444 FSPNSFDRVLLDAPCSALGLRPRLFAGEETIESLRNHAKYQRRMFDQAVQLVRPGGVIVY 503
Query: 481 STCTINPGENEAL 493
STCTINPGENEAL
Sbjct: 504 STCTINPGENEAL 516
>gi|302143528|emb|CBI22089.3| unnamed protein product [Vitis vinifera]
Length = 561
Score = 783 bits (2022), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/493 (76%), Positives = 424/493 (86%), Gaps = 6/493 (1%)
Query: 1 MDLSGRYSYSPLLRWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDV 60
MD S RY Y+P+LRWNPQVE YF +AYG HFSRI++AL RPSCYSCIRVNTLK+T+D V
Sbjct: 1 MDPSDRYCYNPVLRWNPQVEAYFSKAYGPHHFSRITQALARPSCYSCIRVNTLKSTSDAV 60
Query: 61 IQKLLAIIQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGYEPD 120
I+KLLAIIQ E ++ ++ K L+ G+IS+ Q+PGL+YVVFV+GSGPHTI+YGYE D
Sbjct: 61 IEKLLAIIQ-----ETELGNT-KKSLETGSISKCQLPGLDYVVFVRGSGPHTIEYGYEID 114
Query: 121 KPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGIT 180
+PPKEVIVSRKCAEAVLRGAQVYVPGV+ACSSHVEKGDVVAVSVAVEQP DGGWG+GIT
Sbjct: 115 RPPKEVIVSRKCAEAVLRGAQVYVPGVLACSSHVEKGDVVAVSVAVEQPGTDGGWGVGIT 174
Query: 181 RGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVLE 240
RGTVLQG QTDPY+FER+ LYIGQG MMSRAGIFRAS GIAVDM+NR+F+LPSF+DVLE
Sbjct: 175 RGTVLQGQQTDPYHFERNALYIGQGATMMSRAGIFRASGGIAVDMNNRVFKLPSFHDVLE 234
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
GEIFLQNLPSIVTAHALDPQ+ ERILDMCAAPGGKTTAIA L++D+GEV+AVDRSHNKVM
Sbjct: 235 GEIFLQNLPSIVTAHALDPQQDERILDMCAAPGGKTTAIAILMKDQGEVIAVDRSHNKVM 294
Query: 301 DIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEV 360
DIQKLAAEMGL CITTYKLDALKAV R NESND KD +T Q+SDS +L E
Sbjct: 295 DIQKLAAEMGLHCITTYKLDALKAVCRSNESNDMTTPSCRKDAEGVTLQSSDSPRLQMEK 354
Query: 361 PSIAAEGLNGDKSCKEKVSNEKGVERTYVSKADTRKNMRRMRNGPGRNQCLGGRAENSKG 420
+ E D +C+E V N +G +RTY SKAD RKN+RRMRNGPGRNQ +GGR E SKG
Sbjct: 355 NQCSTEAFAADFACQENVINGEGNQRTYTSKADIRKNIRRMRNGPGRNQGMGGRVEKSKG 414
Query: 421 FSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
FSPNSFDRVLLDAPCSALGLRPRLFA EETI+SLRNH KYQRRMFDQAVQLVRPGG+IVY
Sbjct: 415 FSPNSFDRVLLDAPCSALGLRPRLFAGEETIESLRNHAKYQRRMFDQAVQLVRPGGVIVY 474
Query: 481 STCTINPGENEAL 493
STCTINPGENEAL
Sbjct: 475 STCTINPGENEAL 487
>gi|255574263|ref|XP_002528046.1| RNA binding protein, putative [Ricinus communis]
gi|223532576|gb|EEF34364.1| RNA binding protein, putative [Ricinus communis]
Length = 586
Score = 743 bits (1919), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/495 (71%), Positives = 411/495 (83%), Gaps = 14/495 (2%)
Query: 1 MDLSGRYSYSPLLRWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDV 60
MD S RY ++P L+WNPQVE+YF +AYG D+FSRIS ALTRP YSCIRVNTLKTT D V
Sbjct: 30 MDPSERYCFNPKLQWNPQVEDYFTKAYGPDYFSRISHALTRPPSYSCIRVNTLKTTADAV 89
Query: 61 IQKLLAIIQNSGSSEADVA--SSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGYE 118
++KL+ ++ + + A + ++ RL I++ QIPGL+YV+FVKGSGPH IDYG+
Sbjct: 90 VEKLMEFVKETSFEDCSEAGRNDIEDRLCKSPITKCQIPGLDYVLFVKGSGPHMIDYGFS 149
Query: 119 PDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLG 178
P PPKEVIVSRKCAEAVLRGAQV+VPGVMACS+HVEKGD VAVSVA+EQ DGGW +G
Sbjct: 150 PGAPPKEVIVSRKCAEAVLRGAQVFVPGVMACSAHVEKGDAVAVSVAIEQHCPDGGWAIG 209
Query: 179 ITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDV 238
+TRGTVLQG TDPYYF+R+GLYIGQG MSRAG+FR EGIAVDM NR+F+LPSF+DV
Sbjct: 210 MTRGTVLQGLPTDPYYFQRNGLYIGQGKTTMSRAGLFRVPEGIAVDMSNRVFKLPSFHDV 269
Query: 239 LEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNK 298
L+GEIFLQN PSI+TAHALDPQKGER+LDMCAAPGGKTTAIA L+++EGE++A DRSHNK
Sbjct: 270 LKGEIFLQNFPSIITAHALDPQKGERVLDMCAAPGGKTTAIAILMKNEGEIIACDRSHNK 329
Query: 299 VMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHK 358
V+DIQKLAAEM L CITTYKLDALKAVRRK ES+ EP + S+S+++ +
Sbjct: 330 VLDIQKLAAEMSLTCITTYKLDALKAVRRKTESH-EP-----------VTVGSESLRVQE 377
Query: 359 EVPSIAAEGLNGDKSCKEKVSNEKGVERTYVSKADTRKNMRRMRNGPGRNQCLGGRAENS 418
E PS A +GLN DK+C E VSNEK ERTYVSKAD RK RRMRNGPGRNQCLGGR ENS
Sbjct: 378 EKPSSAVQGLNPDKACNEPVSNEKEKERTYVSKADIRKERRRMRNGPGRNQCLGGRVENS 437
Query: 419 KGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGII 478
KGF P+SFDRVLLDAPCSALGLRPRLFA EET++SLR+H YQRRMFDQAV+LVRPGG+I
Sbjct: 438 KGFDPDSFDRVLLDAPCSALGLRPRLFAGEETVKSLRSHAVYQRRMFDQAVKLVRPGGVI 497
Query: 479 VYSTCTINPGENEAL 493
VYSTCTINPGENEAL
Sbjct: 498 VYSTCTINPGENEAL 512
>gi|449453870|ref|XP_004144679.1| PREDICTED: putative methyltransferase NSUN6-like [Cucumis sativus]
Length = 556
Score = 720 bits (1858), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/492 (71%), Positives = 398/492 (80%), Gaps = 18/492 (3%)
Query: 2 DLSGRYSYSPLLRWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVI 61
DL RYSY+P+L WNPQVEEYF++AYGA+HFS ISKALTRPSCYSCIRVNTLK+TTD VI
Sbjct: 7 DLPERYSYNPVLIWNPQVEEYFVKAYGAEHFSHISKALTRPSCYSCIRVNTLKSTTDTVI 66
Query: 62 QKLLAIIQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGYEPDK 121
+KL I++ G + V + Q+ +IS Q+PGL+YVVFV+GSGPHTIDYGY +
Sbjct: 67 EKLSTIVKEMGYEKKPVTE----KFQHPSISRCQVPGLDYVVFVRGSGPHTIDYGYANGR 122
Query: 122 PPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITR 181
PPKEVIVSRKCAEAVLRGAQVYVPGVMACS+HVEKGD VAVSVAVEQ +DGGW LGITR
Sbjct: 123 PPKEVIVSRKCAEAVLRGAQVYVPGVMACSAHVEKGDAVAVSVAVEQRGVDGGWSLGITR 182
Query: 182 GTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVLEG 241
GTV+QG TDPY+ ER+GLYIGQGT MSRAGIFR S GIAVDM+NR+F+LPSFYDVLEG
Sbjct: 183 GTVVQGLPTDPYHSERNGLYIGQGTTAMSRAGIFRVSGGIAVDMNNRVFKLPSFYDVLEG 242
Query: 242 EIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMD 301
EIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIA L++DEGEV+A DRSHNKVMD
Sbjct: 243 EIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIAILMKDEGEVIAADRSHNKVMD 302
Query: 302 IQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVP 361
IQKLAAEMGL CI TYKLDALK+V R +S N+ + + +S+SM L P
Sbjct: 303 IQKLAAEMGLSCIATYKLDALKSVNRNVDSCKGTASVCIDANDGVVNNSSNSMNLDNVEP 362
Query: 362 SIAAEGLNGDKSCKEKVSNEKGVERTYVSKADTRKNMRRMRNGPGRNQCLGGRAENSKGF 421
S V+ V++T + A + N R RNGPGRNQC+GGRAENS+GF
Sbjct: 363 S--------------SVTEVSEVDKTKMQNAKQKMNGWRPRNGPGRNQCMGGRAENSRGF 408
Query: 422 SPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYS 481
+PNSFDRVLLDAPCSALGLRPR+FA EETI SLRNH KYQRRMFDQAVQLVRPGG+IVYS
Sbjct: 409 APNSFDRVLLDAPCSALGLRPRIFAGEETIASLRNHAKYQRRMFDQAVQLVRPGGVIVYS 468
Query: 482 TCTINPGENEAL 493
TCTINPGENEAL
Sbjct: 469 TCTINPGENEAL 480
>gi|449504229|ref|XP_004162289.1| PREDICTED: LOW QUALITY PROTEIN: putative methyltransferase
NSUN6-like [Cucumis sativus]
Length = 559
Score = 719 bits (1857), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/492 (71%), Positives = 399/492 (81%), Gaps = 15/492 (3%)
Query: 2 DLSGRYSYSPLLRWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVI 61
DL RYSY+P+L WNPQVEEYF++AYGA+HFS ISKALTRPSCYSCIRVNTLK+TTD VI
Sbjct: 7 DLPERYSYNPVLIWNPQVEEYFVKAYGAEHFSHISKALTRPSCYSCIRVNTLKSTTDTVI 66
Query: 62 QKLLAIIQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGYEPDK 121
+KL I++ G S ++ V + Q+ +IS Q+PGL+YVVFV+GSGPHTIDYGY +
Sbjct: 67 EKLSTIVKEMGCSNSE-NKPVTEKFQHPSISRCQVPGLDYVVFVRGSGPHTIDYGYANGR 125
Query: 122 PPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITR 181
PPKEVIVSRKCAEAVLRGAQVYVPGVMACS+HVEKGD VAVSVAVEQ +DGGW LGITR
Sbjct: 126 PPKEVIVSRKCAEAVLRGAQVYVPGVMACSAHVEKGDAVAVSVAVEQRGVDGGWSLGITR 185
Query: 182 GTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVLEG 241
GTV+QG TDPY+ ER+GLYIGQGT MSRAG FR S GIAVDM+NR+F+LPSFYDVLEG
Sbjct: 186 GTVVQGLPTDPYHSERNGLYIGQGTTAMSRAGXFRVSGGIAVDMNNRVFKLPSFYDVLEG 245
Query: 242 EIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMD 301
EIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIA L++DEGEV+A DRSHNKVMD
Sbjct: 246 EIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIAILMKDEGEVIAADRSHNKVMD 305
Query: 302 IQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVP 361
IQKLAAEMGL CI TYKLDALK+V R +S N+ + + +S+SM L P
Sbjct: 306 IQKLAAEMGLSCIATYKLDALKSVNRNVDSCKGTASVCIDANDGVVNNSSNSMNLDNVEP 365
Query: 362 SIAAEGLNGDKSCKEKVSNEKGVERTYVSKADTRKNMRRMRNGPGRNQCLGGRAENSKGF 421
S V+ V++T + A + N R RNGPGRNQC+GGRAENS+GF
Sbjct: 366 S--------------SVTEVSEVDKTKMQNAKQKMNGWRPRNGPGRNQCMGGRAENSRGF 411
Query: 422 SPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYS 481
+PNSFDRVLLDAPCSALGLRPR+FA EETI SLRNH KYQRRMFDQAVQLVRPGG+IVYS
Sbjct: 412 APNSFDRVLLDAPCSALGLRPRIFAGEETIASLRNHAKYQRRMFDQAVQLVRPGGVIVYS 471
Query: 482 TCTINPGENEAL 493
TCTINPGENEAL
Sbjct: 472 TCTINPGENEAL 483
>gi|356553761|ref|XP_003545221.1| PREDICTED: putative methyltransferase NSUN6-like [Glycine max]
Length = 571
Score = 695 bits (1793), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/501 (69%), Positives = 401/501 (80%), Gaps = 17/501 (3%)
Query: 2 DLSGRYSYSPLLRWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVI 61
D S RYSY+P+L WNPQV YF++AYGADHFSRIS ALTRPS YSCIRVNTL++T D VI
Sbjct: 5 DPSNRYSYTPILNWNPQVHHYFLKAYGADHFSRISTALTRPSRYSCIRVNTLRSTGDAVI 64
Query: 62 QKLLAIIQNS------GSSEADVASSVK--GRLQNGTISESQIPGLEYVVFVKGSGPHTI 113
KL +++ N+ S DVA+ +K IS+ +IPGL+YVVFV GSGP I
Sbjct: 65 HKLRSLVPNADVPPPQSDSGDDVANPLKECSAAAAAPISKCEIPGLDYVVFVWGSGPRRI 124
Query: 114 DYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDG 173
YG D PPKEVIVSRKCAEAVLRGAQVYVPGVMACS+HVEKGD VAVSVAVE+ DG
Sbjct: 125 HYG---DAPPKEVIVSRKCAEAVLRGAQVYVPGVMACSAHVEKGDTVAVSVAVEKQGADG 181
Query: 174 GWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLP 233
GWG+ +TRGTVLQGS+TDPYYFER+GLYIGQGTAM+SRAG+FR SEG+ VDM +R+++L
Sbjct: 182 GWGIAMTRGTVLQGSETDPYYFERNGLYIGQGTAMLSRAGMFRVSEGVGVDMKDRVYELH 241
Query: 234 SFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVD 293
SF++VLEGEIFLQNLPSI+ AHALDPQKGERILDMCAAPGGKTTAIA L++DEGE++A D
Sbjct: 242 SFHNVLEGEIFLQNLPSIIAAHALDPQKGERILDMCAAPGGKTTAIAILMKDEGEIIATD 301
Query: 294 RSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDS 353
RSHNKV+DIQKLAAEMGL CI T+KLDALK+V R+++ + + C + +T+Q DS
Sbjct: 302 RSHNKVLDIQKLAAEMGLSCIKTFKLDALKSVCRRDDIDTFTDPCCNNAKIDVTNQVLDS 361
Query: 354 MKLHKE-VPSIAAEGLNGDKSCKEKVSNEKGVERTYVSKADTRKNMRRMRNGPGRNQCLG 412
L E V S++ C K +K YVSKAD RKNMRR RNGPGRNQC+G
Sbjct: 362 PNLQVERVISVSTI-----YKCIFKDKGKKPNGGAYVSKADIRKNMRRARNGPGRNQCVG 416
Query: 413 GRAENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLV 472
GR + SKGFSP+SFDRVLLDAPCSALGLRPRLFA EETIQSLRNH KYQRRMFDQAVQLV
Sbjct: 417 GRVDRSKGFSPDSFDRVLLDAPCSALGLRPRLFAGEETIQSLRNHAKYQRRMFDQAVQLV 476
Query: 473 RPGGIIVYSTCTINPGENEAL 493
RPGGIIVYSTCTINPGENEAL
Sbjct: 477 RPGGIIVYSTCTINPGENEAL 497
>gi|357494215|ref|XP_003617396.1| Ribosomal RNA small subunit methyltransferase B [Medicago
truncatula]
gi|355518731|gb|AET00355.1| Ribosomal RNA small subunit methyltransferase B [Medicago
truncatula]
Length = 572
Score = 658 bits (1697), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/497 (64%), Positives = 394/497 (79%), Gaps = 16/497 (3%)
Query: 4 SGRYSYSPLLRWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQK 63
S RYS++P L WNPQ+ YFI AYG+DHFSRIS ALTRPS YSCIRVNTL +T+D VI+K
Sbjct: 11 SQRYSFNPTLNWNPQLHNYFINAYGSDHFSRISSALTRPSRYSCIRVNTLCSTSDAVIEK 70
Query: 64 LLAIIQN--SGSSEADVASSVKGRLQN-----GTISESQIPGLEYVVFVKGSGPHTIDYG 116
L + ++ +GS DV +V ++ + + +IPGL+YVVFV GSGPH +DYG
Sbjct: 71 LRSTVKEKLNGSDCEDVDDAVNPLKEDLDSDSSLLFKCKIPGLDYVVFVWGSGPHHVDYG 130
Query: 117 YEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWG 176
+ PKEVIVSRKCAEAVLRGAQVYVPG+MACS+HVEKGD VAVSVA+EQ DGGW
Sbjct: 131 ---NVAPKEVIVSRKCAEAVLRGAQVYVPGIMACSAHVEKGDTVAVSVAIEQQGSDGGWS 187
Query: 177 LGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFY 236
G+TRG VLQGS+TDPYY ER+GLYIGQGTAM+SRAG+FR +EG+ VDM +R+++L SF+
Sbjct: 188 SGMTRGIVLQGSETDPYYLERNGLYIGQGTAMLSRAGMFRVTEGLGVDMKDRVYELHSFH 247
Query: 237 DVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296
+VLEGEIFLQNLPSI+ AHALDPQ GERILDMCAAPGGKTTAIA L++D+GEV+A DRSH
Sbjct: 248 NVLEGEIFLQNLPSIIAAHALDPQMGERILDMCAAPGGKTTAIAILMKDKGEVIATDRSH 307
Query: 297 NKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKL 356
NKV+DI+KLAAE+GL CI +KLDALK+V ++N+ + C++ N + +Q S ++++
Sbjct: 308 NKVLDIEKLAAELGLSCIKAFKLDALKSVSQRNDI----DTCHNNATNDVKNQVSSNLQV 363
Query: 357 HKEVPSIAAEGLNGDKSCKEKVSNEKGVERTYVSKADTRKNMRRMRNGPGRNQCLGGRAE 416
+ P + E + + +E EK E Y SKA+ RK+MRR RNGPGRNQ GGR +
Sbjct: 364 ERMSP-LVTESFKTE-TLEENGKGEKAREGAYPSKAEIRKSMRRARNGPGRNQSGGGRVD 421
Query: 417 NSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGG 476
SKGF P+SFDRVLLDAPCSALGLRPRLFA E+TI+SLR+H KYQRRMFDQAVQLVRPGG
Sbjct: 422 ISKGFEPDSFDRVLLDAPCSALGLRPRLFAGEDTIESLRSHAKYQRRMFDQAVQLVRPGG 481
Query: 477 IIVYSTCTINPGENEAL 493
+IVYSTCTINPGENEAL
Sbjct: 482 VIVYSTCTINPGENEAL 498
>gi|297843456|ref|XP_002889609.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297335451|gb|EFH65868.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 599
Score = 651 bits (1680), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/490 (65%), Positives = 382/490 (77%), Gaps = 7/490 (1%)
Query: 4 SGRYSYSPLLRWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQK 63
S RY Y P+LRWNPQVE+YF +AYG DHF+RISKALTRPS YSCIRVNT+KTT+D VI+K
Sbjct: 44 SERYCYDPVLRWNPQVEDYFTKAYGPDHFARISKALTRPSSYSCIRVNTVKTTSDAVIEK 103
Query: 64 LLAIIQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGYEPDKPP 123
L I+ +S V + I++ QIPGL+YVV V GSGPH I+Y + PP
Sbjct: 104 LTKILNDSEEGLKLVQPD-----GSSPIAKCQIPGLDYVVLVNGSGPHRIEYDSGLEIPP 158
Query: 124 KEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGT 183
KEV+VSRKCAEAVLRGAQVYVPGV+AC++HVEKGD VAV VA+EQP +G W + +TRGT
Sbjct: 159 KEVLVSRKCAEAVLRGAQVYVPGVLACTAHVEKGDAVAVCVAMEQPGDEGDWSVNMTRGT 218
Query: 184 VLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVLEGEI 243
LQG TDPYY ERSGLYIG GTAM+SRAG+FR GIAVD+ NR+F+LPS ++VLEGEI
Sbjct: 219 TLQGLSTDPYYRERSGLYIGMGTAMLSRAGMFRVPHGIAVDLSNRVFRLPSLHNVLEGEI 278
Query: 244 FLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQ 303
FLQNLPSI+ AHALDPQKGERILDMCAAPGGKTTAIA L+ DEGE+VA DRSHNKV+++Q
Sbjct: 279 FLQNLPSIIVAHALDPQKGERILDMCAAPGGKTTAIAILMNDEGEIVAADRSHNKVLNVQ 338
Query: 304 KLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSI 363
KL+AEMGL CITT KLDALK+V N ND + NS +N+ +TS + S + +E+ S+
Sbjct: 339 KLSAEMGLSCITTCKLDALKSVCIPNPPNDSTTIVNSDNNSSMTSHSELSSR--EEMTSL 396
Query: 364 AAEGLNGDKSCKEKVSNEKGVERTYVSKADTRKNMRRMRNGPGRNQCLGGRAENSKGFSP 423
A+ DKS +E S E+ VS+AD RKN R++NG GR QC GGR S+GF P
Sbjct: 397 ASRKSKADKSWEENASPEQTNGGNNVSQADIRKNKGRLKNGRGRTQCQGGRVGKSQGFPP 456
Query: 424 NSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTC 483
+SFDRVLLDAPCSALGLRPRLFA ET+ SLR+HG+YQR+M DQAVQLVR GGI+VYSTC
Sbjct: 457 DSFDRVLLDAPCSALGLRPRLFAGLETVISLRDHGRYQRKMLDQAVQLVRVGGILVYSTC 516
Query: 484 TINPGENEAL 493
TINP ENEA+
Sbjct: 517 TINPSENEAV 526
>gi|226495531|ref|NP_001145845.1| hypothetical protein [Zea mays]
gi|219884681|gb|ACL52715.1| unknown [Zea mays]
gi|413920972|gb|AFW60904.1| hypothetical protein ZEAMMB73_425055 [Zea mays]
Length = 585
Score = 637 bits (1644), Expect = e-180, Method: Compositional matrix adjust.
Identities = 323/502 (64%), Positives = 382/502 (76%), Gaps = 24/502 (4%)
Query: 6 RYSYSPLLRWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLL 65
RY+YSP LRW P+VEEYF AYG DHF+RIS+AL PSCYSCIRVNTLK++TD V+ KLL
Sbjct: 19 RYTYSPRLRWQPEVEEYFNTAYGRDHFARISEALAHPSCYSCIRVNTLKSSTDAVMHKLL 78
Query: 66 AII-QNSGSSEADVASSVK----GRLQNGTISESQIP--GLEYVVFVKGSGPHTIDYGYE 118
++ +N S+ + V+ + Q G + P GLE V+FV+GSGPH + YG +
Sbjct: 79 DLVCKNELSAVINGLEVVELNGGDQSQEGCSLVHKCPYAGLENVLFVQGSGPHVLHYGSQ 138
Query: 119 PDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLG 178
PD+ KEV+VSRKCAE+VLRGAQVYVPGV+ACSSHVEKGD VAVSVA+EQP + GW +G
Sbjct: 139 PDQAVKEVVVSRKCAESVLRGAQVYVPGVLACSSHVEKGDKVAVSVAIEQPVKEDGWAVG 198
Query: 179 ITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDV 238
ITRGTVLQG Q+D +Y ER GLYIGQGTA MSR+ IFR GIAV+M R+++LPSF DV
Sbjct: 199 ITRGTVLQGLQSDAHYEERKGLYIGQGTAAMSRSAIFRVPHGIAVEMTERVYKLPSFNDV 258
Query: 239 LEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNK 298
LEGEIFLQNLPS+VTA LDPQ GERILDMCAAPGGKTTAIA L+RDEGEVVA+DRSHNK
Sbjct: 259 LEGEIFLQNLPSVVTARVLDPQSGERILDMCAAPGGKTTAIAILMRDEGEVVALDRSHNK 318
Query: 299 VMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHK 358
VMDI KLA+EM L CI YKLDALK+VR+ DE DN+ S++++
Sbjct: 319 VMDILKLASEMDLSCIKAYKLDALKSVRK----TDEARSLGMADNH------SEAIETPT 368
Query: 359 EVPSIAAEG-----LNGDKSCKEKV--SNEKGVERTYVSKADTRKNMRRMRNGPGRNQCL 411
E P A G ++ D S V N+ + Y+SKA+ RKN+R+M+NGPGRN C
Sbjct: 369 EDPCHATVGGRSTSVDEDSSTTTVVFSDNKNLNSKRYISKAELRKNLRQMKNGPGRNNCS 428
Query: 412 GGRAENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQL 471
GGR E SKGF PNSFDRVLLDAPCSALGLRPRLFA EET++SL+ H KYQR+MFDQAV+L
Sbjct: 429 GGRVEKSKGFCPNSFDRVLLDAPCSALGLRPRLFAGEETLESLKKHSKYQRKMFDQAVKL 488
Query: 472 VRPGGIIVYSTCTINPGENEAL 493
VRPGG+IVYSTCTINPGENEAL
Sbjct: 489 VRPGGVIVYSTCTINPGENEAL 510
>gi|115476098|ref|NP_001061645.1| Os08g0365900 [Oryza sativa Japonica Group]
gi|38636850|dbj|BAD03090.1| putative nucleolar protein [Oryza sativa Japonica Group]
gi|113623614|dbj|BAF23559.1| Os08g0365900 [Oryza sativa Japonica Group]
gi|215717005|dbj|BAG95368.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222640447|gb|EEE68579.1| hypothetical protein OsJ_27075 [Oryza sativa Japonica Group]
Length = 589
Score = 637 bits (1642), Expect = e-180, Method: Compositional matrix adjust.
Identities = 311/495 (62%), Positives = 373/495 (75%), Gaps = 8/495 (1%)
Query: 6 RYSYSPLLRWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLL 65
RY+YSP LRW P+VEEYF AYG D F+RIS+AL PSCYSCIRVNTLK++TD V+ KL+
Sbjct: 21 RYTYSPRLRWQPEVEEYFAAAYGRDRFARISEALAHPSCYSCIRVNTLKSSTDAVMHKLM 80
Query: 66 AIIQNSG----SSEADVASSVKGRLQ---NGTISESQIPGLEYVVFVKGSGPHTIDYGYE 118
++ +G + ++ G N + + GL+ V+FV+GSGPH + Y +
Sbjct: 81 NLVDQNGLCGGINGLEIGQQNGGEQAHEGNSVVHKCPYSGLDNVLFVQGSGPHALHYNSQ 140
Query: 119 PDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLG 178
PD+ KEVIVSRKCAE+VLRGAQVY+PGV+ACSSHVEKGD VAVSVA+EQP DGGW +G
Sbjct: 141 PDQSIKEVIVSRKCAESVLRGAQVYIPGVLACSSHVEKGDKVAVSVAIEQPAEDGGWTVG 200
Query: 179 ITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDV 238
ITRGTVLQG Q+D ++ ER GLYIGQG MSR+GIFR G+AV+M R+++LPSF DV
Sbjct: 201 ITRGTVLQGLQSDAHHEERKGLYIGQGITAMSRSGIFRVPHGVAVEMTERVYKLPSFNDV 260
Query: 239 LEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNK 298
LEGEIFLQNLPS+V A LDPQ GERILDMCAAPGGKTTAIA L++D+GE++A+DRSHNK
Sbjct: 261 LEGEIFLQNLPSVVAARVLDPQPGERILDMCAAPGGKTTAIAILMKDQGEIIALDRSHNK 320
Query: 299 VMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHK 358
VMDI KLAAEM L CI YKLDALK+VR+ NE+ S+ + +T ++K
Sbjct: 321 VMDILKLAAEMDLNCIKAYKLDALKSVRKTNEAK-YIGEAGSRTDAIVTLAEDSEPCINK 379
Query: 359 EVPSIAAEGLNGDKSCKEKVSNEKGVERTYVSKADTRKNMRRMRNGPGRNQCLGGRAENS 418
+ + + N+K ++ YVSKAD RKN+RRMRNGPGRN C GGR ENS
Sbjct: 380 VDAGTTNASEDSSTTSVVQTDNKKTDDKRYVSKADLRKNLRRMRNGPGRNNCSGGRVENS 439
Query: 419 KGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGII 478
KGF PNSFDRVLLDAPCSALGLRPRLFA EET++SLRNH YQRRMFDQAV+LV PGG+I
Sbjct: 440 KGFLPNSFDRVLLDAPCSALGLRPRLFAGEETLESLRNHATYQRRMFDQAVKLVHPGGVI 499
Query: 479 VYSTCTINPGENEAL 493
VYSTCTINPGENEAL
Sbjct: 500 VYSTCTINPGENEAL 514
>gi|42561755|ref|NP_172143.3| NOL1/NOP2/sun-like protein [Arabidopsis thaliana]
gi|30102680|gb|AAP21258.1| At1g06560 [Arabidopsis thaliana]
gi|110743735|dbj|BAE99704.1| hypothetical protein [Arabidopsis thaliana]
gi|332189884|gb|AEE28005.1| NOL1/NOP2/sun-like protein [Arabidopsis thaliana]
Length = 599
Score = 635 bits (1638), Expect = e-179, Method: Compositional matrix adjust.
Identities = 312/490 (63%), Positives = 378/490 (77%), Gaps = 7/490 (1%)
Query: 4 SGRYSYSPLLRWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQK 63
S RY Y P+LRWNP+VE+YF +AYG DHF+RISKALTRPS YSCIRVNT+KTT+D VI+K
Sbjct: 44 SERYCYDPVLRWNPEVEDYFTKAYGPDHFARISKALTRPSSYSCIRVNTVKTTSDAVIEK 103
Query: 64 LLAIIQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGYEPDKPP 123
L I+ +S V + +++ QIPGL+YVVFV GSGPH I+Y + PP
Sbjct: 104 LTKILNDSEEGLKLVQPD-----GSSPVTKCQIPGLDYVVFVNGSGPHKIEYDSGLENPP 158
Query: 124 KEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGT 183
KEV+VSRKCAEAVLRGAQVYVPGV+AC++HVEKGD VAV VA+EQP +G W + +TRGT
Sbjct: 159 KEVLVSRKCAEAVLRGAQVYVPGVLACTAHVEKGDAVAVCVAMEQPGDEGDWSVNMTRGT 218
Query: 184 VLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVLEGEI 243
LQG TDPYY ERSGLYIG GTAM+SRAG+FR GIAVD+++R+F+LPS +++LEGEI
Sbjct: 219 TLQGLPTDPYYRERSGLYIGMGTAMLSRAGMFRVPNGIAVDLNHRVFRLPSLHNILEGEI 278
Query: 244 FLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQ 303
FLQNLPSI+ AHALDPQKGERILDMCAAPGGKTTAIA L+ DEGE+VA DRSHNKV+ +Q
Sbjct: 279 FLQNLPSIIVAHALDPQKGERILDMCAAPGGKTTAIAILMNDEGEIVAADRSHNKVLVVQ 338
Query: 304 KLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSI 363
L+AEMG CITT KLDALK+V N+ + N +++ +TS + + ++E+ S+
Sbjct: 339 NLSAEMGFTCITTCKLDALKSVCLPTTLNESTILINGDNSSSMTSHS--ELSSNEEMTSV 396
Query: 364 AAEGLNGDKSCKEKVSNEKGVERTYVSKADTRKNMRRMRNGPGRNQCLGGRAENSKGFSP 423
+ DKSC++ S E+ VS+A RKN R++NG GR QC GGRA S+GF P
Sbjct: 397 TSRRSEADKSCEKNDSTEQPNGGDNVSQAYIRKNKGRLKNGRGRTQCQGGRAGKSQGFPP 456
Query: 424 NSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTC 483
NSFDRVLLDAPCSALGLRPRLFA ET+ SLRNHG YQR+M DQAVQLVR GGI+VYSTC
Sbjct: 457 NSFDRVLLDAPCSALGLRPRLFAGLETVVSLRNHGWYQRKMLDQAVQLVRVGGILVYSTC 516
Query: 484 TINPGENEAL 493
TINP ENEA+
Sbjct: 517 TINPSENEAV 526
>gi|242078877|ref|XP_002444207.1| hypothetical protein SORBIDRAFT_07g014990 [Sorghum bicolor]
gi|241940557|gb|EES13702.1| hypothetical protein SORBIDRAFT_07g014990 [Sorghum bicolor]
Length = 585
Score = 634 bits (1634), Expect = e-179, Method: Compositional matrix adjust.
Identities = 314/503 (62%), Positives = 381/503 (75%), Gaps = 22/503 (4%)
Query: 4 SGRYSYSPLLRWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQK 63
+GRY+YSP LRW P+VEEYF AYG DHF+RIS+AL PSCYSCIRVNTLK++TD V+ K
Sbjct: 17 AGRYTYSPRLRWQPEVEEYFAAAYGRDHFARISEALAHPSCYSCIRVNTLKSSTDAVMHK 76
Query: 64 LLAIIQNSGSSEADVASSVKG----RLQNGT--------ISESQIPGLEYVVFVKGSGPH 111
L+ ++ E ++++++ G L G + + GLE V+FV+GSGPH
Sbjct: 77 LMDLV-----CENELSAAINGVEAVELNGGEQPHEGSSLVHKCPYAGLENVLFVQGSGPH 131
Query: 112 TIDYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTL 171
+ YG +PD+ KEV+VSRKCAE+VLRGAQVYVPGV+ACSSHVEKGD VAVSVA+EQP
Sbjct: 132 VLYYGSQPDQAVKEVVVSRKCAESVLRGAQVYVPGVLACSSHVEKGDKVAVSVAIEQPVK 191
Query: 172 DGGWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQ 231
+ GW +GITRGTVLQG Q+D +Y ER+GLYIGQGTA MSR+ +FR GIAV+M +
Sbjct: 192 EDGWAVGITRGTVLQGLQSDAHYEERTGLYIGQGTAAMSRSALFRVPHGIAVEMTETTQK 251
Query: 232 LPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVA 291
P + DVLEGEIFLQNLPS+VT H +DPQ GERILDMCAAPGGKTTAIA L+RD+GEVVA
Sbjct: 252 APMYNDVLEGEIFLQNLPSVVTTHFIDPQSGERILDMCAAPGGKTTAIAILMRDKGEVVA 311
Query: 292 VDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTS 351
+DRSHNKVMDI KLA+EM L CI YKLDALK+VR+ +ES + N + I + T
Sbjct: 312 LDRSHNKVMDILKLASEMDLSCIKAYKLDALKSVRKTDESRNLGMAHNHSEA--IETPTE 369
Query: 352 DSMKLHKEVPSIAAEGLNGDKSCKEKVSNEKGVE-RTYVSKADTRKNMRRMRNGPGRNQC 410
D H + + G+ + S++K + + Y+SKA+ RKN+RRM+NGPGRN C
Sbjct: 370 DP--CHATIDGSSTSVDEGNSTTTVVHSDDKNLNAKRYISKAELRKNLRRMKNGPGRNNC 427
Query: 411 LGGRAENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQ 470
GGR E SKGF PNSFDRVLLDAPCSALGLRPRLFA EET++SL+NH KYQRRMFDQAV+
Sbjct: 428 SGGRVEKSKGFYPNSFDRVLLDAPCSALGLRPRLFAGEETLESLKNHAKYQRRMFDQAVK 487
Query: 471 LVRPGGIIVYSTCTINPGENEAL 493
LVRPGG+IVYSTCTINPGENEAL
Sbjct: 488 LVRPGGVIVYSTCTINPGENEAL 510
>gi|357145794|ref|XP_003573768.1| PREDICTED: putative methyltransferase NSUN6-like [Brachypodium
distachyon]
Length = 590
Score = 619 bits (1597), Expect = e-175, Method: Compositional matrix adjust.
Identities = 316/500 (63%), Positives = 371/500 (74%), Gaps = 16/500 (3%)
Query: 6 RYSYSPLLRWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLL 65
RY++SP LRW P+VEEY + AYG DHF+RIS+AL PSCYSCIRVNTLK++TD V QKLL
Sbjct: 20 RYTFSPSLRWQPEVEEYLVSAYGRDHFARISEALATPSCYSCIRVNTLKSSTDAVRQKLL 79
Query: 66 AIIQNS----GSSEADVASSVKG-RLQNGTISESQIP--GLEYVVFVKGSGPHTIDYGYE 118
++ G + ++ G + G+ + P GLE V+FV+GSGPH + Y +
Sbjct: 80 TLVNQKELCGGINGLGISERNGGEQAHEGSYLVHKCPYSGLENVLFVRGSGPHVLHYNGQ 139
Query: 119 PDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLG 178
P + KE+IVSRKCAE+VLRGAQVYVPGV+ACSSHVEKGD VAVSVA+EQP D GW +G
Sbjct: 140 PGQSIKEIIVSRKCAESVLRGAQVYVPGVLACSSHVEKGDKVAVSVAIEQPVKDSGWAVG 199
Query: 179 ITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDV 238
ITRGTVLQG Q+D +Y ER GLYIGQG A MSR GIFR G+AV+M R+++LPSF DV
Sbjct: 200 ITRGTVLQGLQSDAHYEERKGLYIGQGIAAMSRTGIFRVLHGVAVEMTERVYKLPSFNDV 259
Query: 239 LEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNK 298
LEG+IFLQNLPSIV A LDPQ GE+ILDMCAAPGGKTTAIA L+RD+GE+VA+DRSHNK
Sbjct: 260 LEGDIFLQNLPSIVAARVLDPQPGEQILDMCAAPGGKTTAIAILMRDKGEIVALDRSHNK 319
Query: 299 VMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHK 358
VM I KLA EMGL CI YKLDALK+VR+ NE+ + N N I + D+ H
Sbjct: 320 VMGILKLADEMGLSCIKAYKLDALKSVRKTNEARNLGVADNF--NGAIATMVEDNEPCHT 377
Query: 359 EVPSIAAEGLNGDKSCKE-----KVSNEKGVERTYVSKADTRKNMRRMRNGPGRNQCLGG 413
V S D S K + N R YVSKAD RKN+RRMRNG GR+ C GG
Sbjct: 378 TVFS-GVTNAGEDNSTKPALYLISLHNNLNTNR-YVSKADLRKNLRRMRNGTGRSNCSGG 435
Query: 414 RAENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVR 473
R E+SKGF P+SFDRVLLDAPCSALGLRPRLFA EET++SLR + YQ+RMFDQAVQLVR
Sbjct: 436 RVEDSKGFFPSSFDRVLLDAPCSALGLRPRLFAGEETLESLRKNATYQKRMFDQAVQLVR 495
Query: 474 PGGIIVYSTCTINPGENEAL 493
PGG+IVYSTCTINPGENEAL
Sbjct: 496 PGGVIVYSTCTINPGENEAL 515
>gi|302819862|ref|XP_002991600.1| hypothetical protein SELMODRAFT_133737 [Selaginella moellendorffii]
gi|300140633|gb|EFJ07354.1| hypothetical protein SELMODRAFT_133737 [Selaginella moellendorffii]
Length = 551
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 258/496 (52%), Positives = 321/496 (64%), Gaps = 38/496 (7%)
Query: 6 RYSYSPLLRWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLL 65
+ Y P L WNP V EY AYG DHFSRI ALTRPS Y C+RVN ++T+T VI +L
Sbjct: 4 KLGYRPALLWNPAVYEYLREAYGPDHFSRICDALTRPSTYCCVRVNAMQTSTAAVIAELK 63
Query: 66 AIIQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKE 125
+ S EA+ GT P L+ VV V G GP + Y D+ K
Sbjct: 64 EFLS---SKEAE-----------GTTCYEH-PLLKNVVIVPGRGPCDVSYD---DEVQKI 105
Query: 126 VIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVL 185
V+VSRKCAEAVLRGA+V+VPGV+ACS HV++GD VAV +E G W G+TRGT +
Sbjct: 106 VMVSRKCAEAVLRGAEVFVPGVLACSEHVDEGDSVAVFARIEVKDSAGKWSNGVTRGTTI 165
Query: 186 QGSQTD---PYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVLEGE 242
S + PY + +IG+G AMMSR +FR +GIAV M +RI+ LP+F+ +LEG
Sbjct: 166 PLSDWESCSPYDW-----FIGKGRAMMSRPTLFRERQGIAVKMTDRIYNLPAFHGILEGR 220
Query: 243 IFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDI 302
+FLQNLPSIVTA LDPQ GERILDMCAAPGGKTTAIASL+ + GEV+A+DR+HNKV++I
Sbjct: 221 VFLQNLPSIVTAIVLDPQPGERILDMCAAPGGKTTAIASLMNNTGEVIALDRTHNKVLEI 280
Query: 303 QKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDN----NYITSQTSDSMKLHK 358
LA E+GL CI +KLDALK+V+ +++ + + NY ++ +
Sbjct: 281 LSLAKELGLSCIQAFKLDALKSVQVDSDAQSSLALTQPLEKGLTCNYACVFFANISHFGR 340
Query: 359 -EVPSIAAEGLNGDKSCKEKVSNEKGVERTYVSKADTRKNMRRMRNGPGRNQCLGGRAEN 417
E+ A GD E + Y SKA RK RR++NG GR Q LGGR +
Sbjct: 341 AEIQCFMAT--LGDPPQTEVPPTSQ-----YTSKARERKESRRLKNGRGRGQHLGGRVDM 393
Query: 418 SKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
K F PNSFDRVLLDAPCSALGLRPRLFAAEET++SL H YQRR+FD+AV+LV+ GG
Sbjct: 394 IKRFPPNSFDRVLLDAPCSALGLRPRLFAAEETLESLGRHAIYQRRLFDRAVELVKAGGT 453
Query: 478 IVYSTCTINPGENEAL 493
+VYSTCTINPGENEAL
Sbjct: 454 LVYSTCTINPGENEAL 469
>gi|168034692|ref|XP_001769846.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678955|gb|EDQ65408.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 557
Score = 456 bits (1173), Expect = e-125, Method: Compositional matrix adjust.
Identities = 250/513 (48%), Positives = 331/513 (64%), Gaps = 54/513 (10%)
Query: 9 YSPLLRWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAII 68
Y P L W+P+V +Y +AYG HF++IS+ALTRPS YSC+RVNTL+TTT +VI++L +
Sbjct: 1 YRPRLIWDPRVSDYLSQAYGQQHFAQISEALTRPSVYSCVRVNTLQTTTKEVIKQLTRYV 60
Query: 69 ---QNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGYEPDKPP-- 123
QN E + + S Q+ L+ VV VKG GP +IDY +
Sbjct: 61 LQQQNDNQKEDEGSESCGICFQHDV--------LDNVVMVKGKGPCSIDYTTVRGEGGVL 112
Query: 124 KEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGT 183
KEV+VSRKCAEAVLRGA V+VPGV+ACS +EK ++VAVSVA+E+ +GGW +G+TRGT
Sbjct: 113 KEVVVSRKCAEAVLRGAHVFVPGVLACSGCIEKDELVAVSVAMERSDGEGGWFVGVTRGT 172
Query: 184 VLQGSQTDPYYFE--RSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVLEG 241
L + + RSG +IG G AMM+RA +FR ++G+AV+M +R + LP F VL G
Sbjct: 173 TLSSEHAKSQFNDEDRSGWFIGIGRAMMTRATLFREAKGVAVEMVHRAYNLPPFSGVLSG 232
Query: 242 EIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMD 301
+IFLQNLPS+V H LDPQ GERILDMCAAPGGKTT IA+L+ D+GEV+A+DRSH+KV+D
Sbjct: 233 DIFLQNLPSVVATHVLDPQPGERILDMCAAPGGKTTGIATLMGDKGEVIALDRSHSKVLD 292
Query: 302 IQKLAAEMGLKCITTYKLDALKAVRRKNE----SNDEP--NMCNSKDNNYITSQTSDSMK 355
I +LA EM L CI K+DALK+VR ++ S D+P + N T++ ++++
Sbjct: 293 IVRLAQEMKLTCIQAIKMDALKSVRVESTPDRISQDKPLGEVSN-------TARLTEAVA 345
Query: 356 LHKEVPSIAAEGLNGDKSCKEKVSNEKGVER------TYVSKADTRKNMRRMRN------ 403
+ + + +E N + C +K E + Y S+ RK R+++
Sbjct: 346 IDDIITNSTSEEPNIIEECSKKHLREATPAKKFKDDGAYASRKAARKEARKLKTELKKAA 405
Query: 404 ---GPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKY 460
P RN GF+P SFDRVLLDAPCSALGLRPRLFA +ET+ LR H Y
Sbjct: 406 EPETPYRN-----------GFAPQSFDRVLLDAPCSALGLRPRLFAGQETLDGLRQHANY 454
Query: 461 QRRMFDQAVQLVRPGGIIVYSTCTINPGENEAL 493
QRR+ DQAVQLVRP G +VYSTCT+NPGENE +
Sbjct: 455 QRRLIDQAVQLVRPNGTLVYSTCTLNPGENEGV 487
>gi|224082578|ref|XP_002306750.1| predicted protein [Populus trichocarpa]
gi|222856199|gb|EEE93746.1| predicted protein [Populus trichocarpa]
Length = 294
Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust.
Identities = 220/307 (71%), Positives = 252/307 (82%), Gaps = 24/307 (7%)
Query: 4 SGRYSYSPLLRWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQK 63
S RY +SP+LRWNP+VE YFI+AYGADHFS ISKALTRPS YSC+RVNTLK+T+D VI+K
Sbjct: 1 SDRYCFSPILRWNPEVENYFIKAYGADHFSIISKALTRPSSYSCVRVNTLKSTSDAVIEK 60
Query: 64 LLAIIQNSG-----------SSEADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHT 112
LL II+ G + +V S ++ L+NG I + QIPGLEYV+FVKG+GPH
Sbjct: 61 LLEIIKEKGFDGDCHGKEGSGTNENVGSPLEESLKNGPIVKCQIPGLEYVLFVKGTGPHM 120
Query: 113 IDYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLD 172
IDYGY P PPKEVIVSRKCAEAVLRGAQV+VPGVMACS+HVEKGD VAVS A+EQ +
Sbjct: 121 IDYGYVPGAPPKEVIVSRKCAEAVLRGAQVFVPGVMACSAHVEKGDTVAVSAAIEQRNPN 180
Query: 173 GGWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQL 232
GGW + DPYYFER+GLYIGQGTA MSRAG+FRAS+GIAVDM+NR+F+L
Sbjct: 181 GGWAI-------------DPYYFERNGLYIGQGTATMSRAGLFRASKGIAVDMNNRVFRL 227
Query: 233 PSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAV 292
PSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIA L++DEGE+VA+
Sbjct: 228 PSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIAILMKDEGELVAL 287
Query: 293 DRSHNKV 299
DRSHNKV
Sbjct: 288 DRSHNKV 294
>gi|302776778|ref|XP_002971535.1| hypothetical protein SELMODRAFT_412312 [Selaginella moellendorffii]
gi|300160667|gb|EFJ27284.1| hypothetical protein SELMODRAFT_412312 [Selaginella moellendorffii]
Length = 422
Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust.
Identities = 231/483 (47%), Positives = 288/483 (59%), Gaps = 70/483 (14%)
Query: 6 RYSYSPLLRWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLL 65
+ Y P L WNP V EY AYGADHFSRI ALTRPS Y C+R N ++T+T VI +L
Sbjct: 4 KLGYRPALLWNPAVYEYLREAYGADHFSRICDALTRPSTYCCVRANAMQTSTAAVIAELK 63
Query: 66 AIIQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKE 125
+ S EA+ GT P L+ VV V G GP DK
Sbjct: 64 EFLS---SKEAE-----------GTTCYEH-PLLKNVVIVPGRGPC--------DK---- 96
Query: 126 VIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVL 185
V CA + GV+ACS HV++GD VAV +E G W G+TRGT +
Sbjct: 97 --VCGSCAP--------WCRGVLACSEHVDEGDSVAVFARIEVKDSAGKWSNGVTRGTTI 146
Query: 186 QGSQTD------PYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVL 239
S + PY + +IG+G AMMSR +FR +GIAV M +RI+ LP+F+ +L
Sbjct: 147 PLSDWESSLGGSPYDW-----FIGKGRAMMSRPTLFRERQGIAVKMTDRIYNLPAFHGIL 201
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
EG +FLQNLPSIVTA LDPQ GERILDMCAAPGGKTTAIASL+ + GEV+A+DR+HNKV
Sbjct: 202 EGGVFLQNLPSIVTAIVLDPQPGERILDMCAAPGGKTTAIASLMNNTGEVIALDRTHNKV 261
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKE 359
++I LA E+GL CI +KLDALK+V+ +++ S + + L KE
Sbjct: 262 LEILSLAKELGLSCIQAFKLDALKSVQVDSDAQ---------------SSLALTQPLEKE 306
Query: 360 VPSIAAEGLNGDKSCKEKVSNEKGVERTYVSKADTRKNMRRMRNGPGRNQCLGGRAENSK 419
+ A + + E Y SKA RK RR++NG GR Q LGGR + K
Sbjct: 307 IQCFMA-------TLGDPPETEVPPTSQYTSKARERKESRRLKNGRGRGQHLGGRVDMIK 359
Query: 420 GFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIV 479
F PNSFDRVLLDAPCSALGLRPRLFAAEET++SL H YQRR+FD+AV+LV+ GG +V
Sbjct: 360 SFPPNSFDRVLLDAPCSALGLRPRLFAAEETLESLGRHAIYQRRLFDRAVELVKAGGTLV 419
Query: 480 YST 482
YST
Sbjct: 420 YST 422
>gi|6692691|gb|AAF24825.1|AC007592_18 F12K11.11 [Arabidopsis thaliana]
Length = 301
Score = 342 bits (877), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 165/259 (63%), Positives = 202/259 (77%), Gaps = 10/259 (3%)
Query: 4 SGRYSYSPLLRWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQK 63
S RY Y P+LRWNP+VE+YF +AYG DHF+RISKALTRPS YSCIRVNT+KTT+D VI+K
Sbjct: 44 SERYCYDPVLRWNPEVEDYFTKAYGPDHFARISKALTRPSSYSCIRVNTVKTTSDAVIEK 103
Query: 64 LLAIIQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGYEPDKPP 123
L I+ +S V + +++ QIPGL+YVVFV GSGPH I+Y + PP
Sbjct: 104 LTKILNDSEEGLKLVQPD-----GSSPVTKCQIPGLDYVVFVNGSGPHKIEYDSGLENPP 158
Query: 124 KEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGT 183
KEV+VSRKCAEAVLRGAQVYVPGV+AC++HVEKGD VAV VA+EQP +G W + +TRGT
Sbjct: 159 KEVLVSRKCAEAVLRGAQVYVPGVLACTAHVEKGDAVAVCVAMEQPGDEGDWSVNMTRGT 218
Query: 184 VLQG-----SQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDV 238
LQG +Q PYY ERSGLYIG GTAM+SRAG+FR GIAVD+++R+F+LPS +++
Sbjct: 219 TLQGLPTGKNQKYPYYRERSGLYIGMGTAMLSRAGMFRVPNGIAVDLNHRVFRLPSLHNI 278
Query: 239 LEGEIFLQNLPSIVTAHAL 257
LEGEIFLQNLPSI+ AHAL
Sbjct: 279 LEGEIFLQNLPSIIVAHAL 297
>gi|224082580|ref|XP_002306751.1| predicted protein [Populus trichocarpa]
gi|222856200|gb|EEE93747.1| predicted protein [Populus trichocarpa]
Length = 343
Score = 325 bits (833), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 170/279 (60%), Positives = 192/279 (68%), Gaps = 53/279 (18%)
Query: 257 LDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITT 316
LDPQKGERILDMCAAPGGKTTAIA L++DEGE+VA+DRSHNKV DIQKLAAEM L CITT
Sbjct: 3 LDPQKGERILDMCAAPGGKTTAIAILMKDEGELVALDRSHNKVQDIQKLAAEMSLTCITT 62
Query: 317 YKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKE-VPSIAAEGLNGDKSCK 375
YKLD LKA+R++NE++D T+Q+S+S+ H+E S AEG N DK+C+
Sbjct: 63 YKLDVLKAIRQRNEADD-----------INTNQSSNSLWFHEEKASSSTAEGFNLDKTCE 111
Query: 376 EK-----------------------------------------VSNEKGVERTYVSKADT 394
+ VSN TYVSKAD
Sbjct: 112 DNGVQILLFFIDVIHLFIETSKLPLTKMSFPLFTSSSLIFNILVSNAIENGGTYVSKADI 171
Query: 395 RKNMRRMRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSL 454
RK RRMRNGPGRNQC+GGR ENSKGF P+SFDRVLLDAPCSALGLRPRLF E TI SL
Sbjct: 172 RKAKRRMRNGPGRNQCVGGRVENSKGFYPDSFDRVLLDAPCSALGLRPRLFVGEVTIDSL 231
Query: 455 RNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEAL 493
+ H YQRRMFDQAV+LVRPGG+IVYSTCTINPGENEAL
Sbjct: 232 KKHATYQRRMFDQAVKLVRPGGVIVYSTCTINPGENEAL 270
>gi|218201053|gb|EEC83480.1| hypothetical protein OsI_28995 [Oryza sativa Indica Group]
Length = 293
Score = 291 bits (745), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 139/237 (58%), Positives = 174/237 (73%), Gaps = 7/237 (2%)
Query: 6 RYSYSPLLRWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLL 65
RY+YSP LRW P+VEEYF AYG D F+RIS+AL PSCYSCIRVNTLK++TD V+ KL+
Sbjct: 21 RYTYSPRLRWQPEVEEYFAAAYGRDRFARISEALAHPSCYSCIRVNTLKSSTDAVMHKLM 80
Query: 66 AIIQNSGSSEADVASSV-------KGRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGYE 118
++ +G + + N + + GL+ V+FV+GSGPH + Y +
Sbjct: 81 NLVDQNGLCGGINGLEIGQQNGGEQAHEGNSVVHKCPYSGLDNVLFVQGSGPHALHYDSQ 140
Query: 119 PDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLG 178
PD+ KEVIVSRKCAE+VLRGAQVY+PGV+ACSSHVEKGD VAVSVA+EQP DGGW +G
Sbjct: 141 PDQSIKEVIVSRKCAESVLRGAQVYIPGVLACSSHVEKGDKVAVSVAIEQPAEDGGWTVG 200
Query: 179 ITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSF 235
ITRGTVLQG Q+D ++ ER GLYIGQG MSR+GIFR G+AV+M R+++LPSF
Sbjct: 201 ITRGTVLQGLQSDAHHEERKGLYIGQGITAMSRSGIFRVPHGVAVEMTERVYKLPSF 257
>gi|413920973|gb|AFW60905.1| hypothetical protein ZEAMMB73_425055 [Zea mays]
Length = 263
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 144/231 (62%), Positives = 175/231 (75%), Gaps = 7/231 (3%)
Query: 6 RYSYSPLLRWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLL 65
RY+YSP LRW P+VEEYF AYG DHF+RIS+AL PSCYSCIRVNTLK++TD V+ KLL
Sbjct: 19 RYTYSPRLRWQPEVEEYFNTAYGRDHFARISEALAHPSCYSCIRVNTLKSSTDAVMHKLL 78
Query: 66 AII-QNSGSSEADVASSVK----GRLQNGTISESQIP--GLEYVVFVKGSGPHTIDYGYE 118
++ +N S+ + V+ + Q G + P GLE V+FV+GSGPH + YG +
Sbjct: 79 DLVCKNELSAVINGLEVVELNGGDQSQEGCSLVHKCPYAGLENVLFVQGSGPHVLHYGSQ 138
Query: 119 PDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLG 178
PD+ KEV+VSRKCAE+VLRGAQVYVPGV+ACSSHVEKGD VAVSVA+EQP + GW +G
Sbjct: 139 PDQAVKEVVVSRKCAESVLRGAQVYVPGVLACSSHVEKGDKVAVSVAIEQPVKEDGWAVG 198
Query: 179 ITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRI 229
ITRGTVLQG Q+D +Y ER GLYIGQGTA MSR+ IFR GIAV+M R+
Sbjct: 199 ITRGTVLQGLQSDAHYEERKGLYIGQGTAAMSRSAIFRVPHGIAVEMTERM 249
>gi|6692692|gb|AAF24826.1|AC007592_19 F12K11.10 [Arabidopsis thaliana]
Length = 365
Score = 271 bits (692), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 149/274 (54%), Positives = 178/274 (64%), Gaps = 40/274 (14%)
Query: 258 DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTY 317
DPQKGERILDMCAAPGGKTTAIA L+ DEGE+VA DRSHNKV+ +Q L+AEMG CITT
Sbjct: 21 DPQKGERILDMCAAPGGKTTAIAILMNDEGEIVAADRSHNKVLVVQNLSAEMGFTCITTC 80
Query: 318 KLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSC--- 374
KLDALK+V N+ + N +++ +TS + + ++E+ S+ + DKSC
Sbjct: 81 KLDALKSVCLPTTLNESTILINGDNSSSMTSHSE--LSSNEEMTSVTSRRSEADKSCEKN 138
Query: 375 -------------------------KEKV----------SNEKGVERTYVSKADTRKNMR 399
K+KV S E+ VS+A RKN
Sbjct: 139 GNPLSHVYACIYKFKIYIFQLFSKTKQKVDFPIITHVLDSTEQPNGGDNVSQAYIRKNKG 198
Query: 400 RMRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGK 459
R++NG GR QC GGRA S+GF PNSFDRVLLDAPCSALGLRPRLFA ET+ SLRNHG
Sbjct: 199 RLKNGRGRTQCQGGRAGKSQGFPPNSFDRVLLDAPCSALGLRPRLFAGLETVVSLRNHGW 258
Query: 460 YQRRMFDQAVQLVRPGGIIVYSTCTINPGENEAL 493
YQR+M DQAVQLVR GGI+VYSTCTINP ENEA+
Sbjct: 259 YQRKMLDQAVQLVRVGGILVYSTCTINPSENEAV 292
>gi|348679072|gb|EGZ18889.1| hypothetical protein PHYSODRAFT_315386 [Phytophthora sojae]
Length = 501
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 164/477 (34%), Positives = 241/477 (50%), Gaps = 77/477 (16%)
Query: 18 QVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEAD 77
QVE+ AY H++ I AL RP ++ +RVNTLK + D+ +Q L + + A
Sbjct: 26 QVEQELGAAYSEPHWTNIKHALARPPAFTAVRVNTLKLSRDEALQALKPHLDGFNAQLAA 85
Query: 78 VASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVL 137
+ +S R + + +P + ++ SG +D+ E K ++V R C EAVL
Sbjct: 86 LDAS---RQPIEAFAHASLPDV-LMIPSAASGDTAVDFNPEL----KSIVVDRLCGEAVL 137
Query: 138 RGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFER 197
RG+ ++ GVM+ SS + D V V V ++ TRG+ D +
Sbjct: 138 RGSDIFARGVMSASSGINAEDEVNVFVDLDH---------NHTRGS-------DFAAHDG 181
Query: 198 SGLYIGQGTAMMSRAGIFRASEGIAVDMHNRI-FQLPSFYDVLEGEIFLQNLPSIVTAHA 256
L I +G M+R IFRA G+AV R+ P VL G+I++QNLP V AHA
Sbjct: 182 RKLLIARGVTKMARTEIFRAVRGLAVTQLVRVCHDAPPMNGVLHGQIYVQNLPCSVVAHA 241
Query: 257 LDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITT 316
LDPQ+G+ ILDMCAAPGGKT+ +A+L+R++G +VA DRS K ++++ L ++ L+C+
Sbjct: 242 LDPQEGDAILDMCAAPGGKTSHVATLMRNKGTLVACDRSKRKALELRTLCDDLQLECVVP 301
Query: 317 YKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKE 376
K+D+ AV K++ + +AA N D +C
Sbjct: 302 LKMDSTHAVLPKDKVD----------------------------AGLAAAQGNSDFTCVA 333
Query: 377 KVSNEKGVERTYVSKADTRKNMRRMRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCS 436
+V +KADT R ++ +GF P +FDR+LLD PCS
Sbjct: 334 QVLAR--------AKADTPSQARLLQ---------------VEGFFPETFDRILLDPPCS 370
Query: 437 ALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEAL 493
ALGLRPRL A + +L + QR A L++PGG +VYSTCTINP ENE +
Sbjct: 371 ALGLRPRLLHAGDA-DNLAEYTNMQRNFLWVAAFLLKPGGTLVYSTCTINPKENEQM 426
>gi|348679063|gb|EGZ18880.1| hypothetical protein PHYSODRAFT_499736 [Phytophthora sojae]
Length = 501
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 164/477 (34%), Positives = 241/477 (50%), Gaps = 77/477 (16%)
Query: 18 QVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEAD 77
QVE+ AY H++ I AL RP ++ +RVNTLK + D+ +Q L + + A
Sbjct: 26 QVEQELGAAYSEPHWTNIKHALARPPAFTAVRVNTLKLSRDEALQALKPHLDGFNAQLAA 85
Query: 78 VASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVL 137
+ +S R + + +P + ++ SG +D+ E K ++V R C EAVL
Sbjct: 86 LDAS---RQPIEAFAHASLPDV-LMIPSAASGDTAVDFNPEL----KSIVVDRLCGEAVL 137
Query: 138 RGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFER 197
RG+ ++ GVM+ SS + D V V V ++ TRG+ D +
Sbjct: 138 RGSDIFARGVMSASSGINAEDEVNVFVDLDH---------NHTRGS-------DFAAHDG 181
Query: 198 SGLYIGQGTAMMSRAGIFRASEGIAVDMHNRI-FQLPSFYDVLEGEIFLQNLPSIVTAHA 256
L I +G M+R IFRA G+AV R+ P VL G+I++QNLP V AHA
Sbjct: 182 RKLLIARGVTKMARTEIFRAVRGLAVTQLVRVCHDAPPMNGVLHGQIYVQNLPCSVVAHA 241
Query: 257 LDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITT 316
LDPQ+G+ ILDMCAAPGGKT+ +A+L+R++G +VA DRS K ++++ L ++ L+C+
Sbjct: 242 LDPQEGDAILDMCAAPGGKTSHVATLMRNKGTLVACDRSKRKALELRTLCDDLQLECVVP 301
Query: 317 YKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKE 376
K+D+ AV K++ + +AA N D +C
Sbjct: 302 LKMDSTHAVLPKDKVD----------------------------AGLAAAQGNSDFTCVA 333
Query: 377 KVSNEKGVERTYVSKADTRKNMRRMRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCS 436
+V +KADT R ++ +GF P +FDR+LLD PCS
Sbjct: 334 QVLAR--------AKADTPSQARLLQ---------------VEGFFPETFDRILLDPPCS 370
Query: 437 ALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEAL 493
ALGLRPRL A + +L + QR A L++PGG +VYSTCTINP ENE +
Sbjct: 371 ALGLRPRLLHAGDA-DNLAEYTNMQRNFLWVAAFLLKPGGTLVYSTCTINPKENEQM 426
>gi|307111656|gb|EFN59890.1| hypothetical protein CHLNCDRAFT_132901 [Chlorella variabilis]
Length = 585
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 142/326 (43%), Positives = 193/326 (59%), Gaps = 27/326 (8%)
Query: 8 SYSPLLRWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAI 67
+Y+P + W+ +V +Y A G + IS AL RP +C+RVNTL+T+ D++++L
Sbjct: 5 TYAPEISWDSEVRQYLEAALGPQKLAEISAALARPPLATCLRVNTLRTSPQDLLRRL--- 61
Query: 68 IQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVI 127
EA +A + L+ T P L V + G+GPH +DY EV+
Sbjct: 62 ------PEA-LAPEDRALLE--TNPAYVHPLLPDAVILPGTGPHAVDYSRTRGL---EVV 109
Query: 128 VSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQG 187
V RK E+V+RGA V+ PG++A S +EKGD+VAVSV +E P D TRGTVL G
Sbjct: 110 VGRKAGESVMRGAHVFAPGMLAVSPGIEKGDLVAVSVGLELPGSDR---YAYTRGTVL-G 165
Query: 188 SQTDPYYFE--------RSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVL 239
S+ + E RS L+IG G A +SR F+ GIAV M R+F+ P D+L
Sbjct: 166 SEHEAKQVEALGGQAPDRSRLFIGIGRAELSRTEFFQGRGGIAVTMLERVFRTPGCGDIL 225
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
G+ LQN+ S+V AH L P+ G R+LDMCAAPGGKTTA+A L+ D GEVVA DRSH K
Sbjct: 226 PGDFMLQNVCSLVAAHVLAPRPGARVLDMCAAPGGKTTALAQLMGDRGEVVAFDRSHAKA 285
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAV 325
++++LA GL C+ YK+DA KAV
Sbjct: 286 AEVRRLAGSFGLTCVKAYKMDATKAV 311
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 46/80 (57%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 413 GRAENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLV 472
G+ + GF P SFD VL DAPC+ALGLRPRL +T++ L YQR++ AV LV
Sbjct: 435 GKEAAAPGFPPASFDHVLCDAPCTALGLRPRLVH-RQTLRELDQTAAYQRKLLRVAVALV 493
Query: 473 RPGGIIVYSTCTINPGENEA 492
RPGG +V+STC+INPGENEA
Sbjct: 494 RPGGALVFSTCSINPGENEA 513
>gi|301097830|ref|XP_002898009.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262106454|gb|EEY64506.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 497
Score = 234 bits (598), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 158/477 (33%), Positives = 237/477 (49%), Gaps = 81/477 (16%)
Query: 18 QVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEAD 77
QVE+ AYG H++ I +AL RP ++ +RVNTLK + D+ +Q L + + A
Sbjct: 26 QVEQELGAAYGEPHWTNIKRALARPPAFTAVRVNTLKLSRDEALQALKPHLDGFNAQLAA 85
Query: 78 VASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVL 137
+ +S R ++ + +P V+ + S Y P+ K ++V R C EAVL
Sbjct: 86 LDAS---RQPIEALAHASLPD---VLMIPSSPSGQASVQYNPEF--KSIVVDRLCGEAVL 137
Query: 138 RGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFER 197
RG+ ++ GVM+ S+ + D V V V ++ TRG+ D
Sbjct: 138 RGSDIFARGVMSASAGINAEDDVNVFVDLDH---------NHTRGS-------DFATHNG 181
Query: 198 SGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIF-QLPSFYDVLEGEIFLQNLPSIVTAHA 256
L I G M+R IFRA G+AV R+ P VL G+I++QNLP V AH
Sbjct: 182 RKLLIAHGVTKMARTEIFRAVRGLAVTQLVRVCPDAPPMNGVLRGQIYVQNLPCSVVAHV 241
Query: 257 LDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITT 316
LDPQ+G+ ILDMCAAPGGKT+ +A+L+R+ G +VA DRS K ++++ L ++ L+C+
Sbjct: 242 LDPQQGDVILDMCAAPGGKTSHVATLMRNTGTLVACDRSKRKALELRTLCEDLHLECVEP 301
Query: 317 YKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKE 376
K+D+ A+ K++ + P +D ++ TS + L +
Sbjct: 302 LKMDSTHALLPKDKVDAAP-----RDGDF----TSVAQVLAR------------------ 334
Query: 377 KVSNEKGVERTYVSKADTRKNMRRMRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCS 436
+K T + R ++ +GF +FDR+LLD PCS
Sbjct: 335 -------------AKQSTPRQTRLLQ---------------VEGFYLETFDRILLDPPCS 366
Query: 437 ALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEAL 493
ALGLRPRL A + +L + QR A L++PGG +VYSTCTINP ENE +
Sbjct: 367 ALGLRPRLLHAGDA-DNLAEYTNMQRNFLWVAAFLLKPGGTLVYSTCTINPKENEQM 422
>gi|218201052|gb|EEC83479.1| hypothetical protein OsI_28993 [Oryza sativa Indica Group]
Length = 259
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 119/189 (62%), Positives = 135/189 (71%), Gaps = 9/189 (4%)
Query: 309 MGLKCITTYKLDALKAVRRKNESN--DEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAE 366
M L CI YKLDALK+VR+ NE+ E C + I + DS +V +
Sbjct: 1 MDLNCIKAYKLDALKSVRKTNEAKYIGEAGSCT----DAIVTLAEDSEPCINKVDA-GTT 55
Query: 367 GLNGDKSCKEKV--SNEKGVERTYVSKADTRKNMRRMRNGPGRNQCLGGRAENSKGFSPN 424
+ D S V N+K ++ YVSKAD RKN+RRMRNGPGRN C GGR ENSKGF PN
Sbjct: 56 NASEDSSTTSVVQTDNKKTDDKRYVSKADLRKNLRRMRNGPGRNNCSGGRVENSKGFLPN 115
Query: 425 SFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCT 484
SFDRVLLDAPCSALGLRPRLFA EET++SLRNH YQRRMFDQAV+LVRPGG+IVYSTCT
Sbjct: 116 SFDRVLLDAPCSALGLRPRLFAGEETLESLRNHATYQRRMFDQAVKLVRPGGVIVYSTCT 175
Query: 485 INPGENEAL 493
INPGENEAL
Sbjct: 176 INPGENEAL 184
>gi|125561302|gb|EAZ06750.1| hypothetical protein OsI_28994 [Oryza sativa Indica Group]
Length = 222
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 119/189 (62%), Positives = 135/189 (71%), Gaps = 9/189 (4%)
Query: 309 MGLKCITTYKLDALKAVRRKNESN--DEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAE 366
M L CI YKLDALK+VR+ NE+ E C + I + DS +V +
Sbjct: 1 MDLNCIKAYKLDALKSVRKTNEAKYIGEAGSCT----DAIVTLAEDSEPCINKVDA-GTT 55
Query: 367 GLNGDKSCKEKV--SNEKGVERTYVSKADTRKNMRRMRNGPGRNQCLGGRAENSKGFSPN 424
+ D S V N+K ++ YVSKAD RKN+RRMRNGPGRN C GGR ENSKGF PN
Sbjct: 56 NASEDSSTTSVVQTDNKKTDDKRYVSKADLRKNLRRMRNGPGRNNCSGGRVENSKGFLPN 115
Query: 425 SFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCT 484
SFDRVLLDAPCSALGLRPRLFA EET++SLRNH YQRRMFDQAV+LVRPGG+IVYSTCT
Sbjct: 116 SFDRVLLDAPCSALGLRPRLFAGEETLESLRNHATYQRRMFDQAVKLVRPGGVIVYSTCT 175
Query: 485 INPGENEAL 493
INPGENEAL
Sbjct: 176 INPGENEAL 184
>gi|223998784|ref|XP_002289065.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220976173|gb|EED94501.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 362
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 130/376 (34%), Positives = 181/376 (48%), Gaps = 86/376 (22%)
Query: 124 KEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGT 183
+ +IV R C EAVLRGA V+V G++ S + G+ VAV L G + RG
Sbjct: 4 RAIIVDRFCGEAVLRGANVFVKGILCADSGISVGEEVAVYA-----DLRGTNSKPVPRGL 58
Query: 184 VLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIF--QLPSFYDVLEG 241
VL+ + +++G G + R+ F S G+ + M RI PS VL G
Sbjct: 59 VLES-------YPGRCVFLGIGISCCKRSDYFAQSTGVGITM-KRIAGPSQPSLNGVLVG 110
Query: 242 EIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMD 301
++ LQNLPS+V AH LDPQ+GE +LDMC+APGGKT+ +ASL+R+ G V
Sbjct: 111 KMMLQNLPSVVVAHVLDPQQGETVLDMCSAPGGKTSHVASLIRNNGLV------------ 158
Query: 302 IQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVP 361
+A E G K + T + + S I + DS KL +
Sbjct: 159 ---VACEKGRKKMVTAR-----------------DFFQSMGATCIVPLSLDSTKLLID-- 196
Query: 362 SIAAEGLNGD----KSCKEKVSNEKGVERTYVSKADTRKNMRRMRNGPGRNQCLGGRAEN 417
+GD KS KE V + + A ++ + +
Sbjct: 197 -------DGDVFDWKSPKEIVKS---------ASASSKDGLLSI---------------- 224
Query: 418 SKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
KGF PNSFDR+LLD PCSALGLRP+L +++ L H YQ+ AV L++ GG+
Sbjct: 225 -KGFHPNSFDRILLDPPCSALGLRPKLLVDVKSLPELLKHSDYQQLFVRSAVPLLKVGGV 283
Query: 478 IVYSTCTINPGENEAL 493
+ YSTCTIN ENE +
Sbjct: 284 LSYSTCTINASENEGI 299
>gi|326921692|ref|XP_003207090.1| PREDICTED: putative methyltransferase NSUN6-like [Meleagris
gallopavo]
Length = 469
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 116/354 (32%), Positives = 178/354 (50%), Gaps = 56/354 (15%)
Query: 8 SYSPLLRWNPQVEEYFIRAY-------------GADHFSRISKALTRPSCYSCIRVNTLK 54
S+ P + + +VEEY + + + + L+ P + +RVNT
Sbjct: 2 SFFPKISFQHEVEEYLSKVFRNNELITALGTKEAESKYQSLLSHLSHPPAITTVRVNTNL 61
Query: 55 TTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTID 114
+ V + LL IQ + + + + P L ++ + GP
Sbjct: 62 ASVKHVKKLLLEEIQK--------------QFKGTRVPVLEHPQLRDILLIPAIGPRQDL 107
Query: 115 YGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGG 174
YE EVIV +C AVLRGA VYVPG+++ S V+ GD+V+V +E
Sbjct: 108 KKYE-----SEVIVGAQCGYAVLRGAHVYVPGIISTSRFVKAGDLVSVYSDIE------- 155
Query: 175 WGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRAS---EGIAVDMHNRIFQ 231
G +G++ FE +++G G + +SR+ IF + G+ V M ++
Sbjct: 156 -------GKCKRGAKE----FEGVKVFLGNGISELSRSDIFSSHGRMTGLGVRMTEPVYL 204
Query: 232 LPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVA 291
PSF VL +FLQNLPS+V +H L+PQ GERILDMCAAPGGKTT +A+L+RD+GEV+A
Sbjct: 205 SPSFDSVLPSHLFLQNLPSVVVSHVLNPQPGERILDMCAAPGGKTTHLATLMRDQGEVIA 264
Query: 292 VDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAV---RRKNESNDEPNMCNSKD 342
+D+ NKV I++ A + L CI + D KA+ +R+++ P + S D
Sbjct: 265 MDKIANKVKKIKQNAELLQLNCIKAFCYDGTKALSVEKREDKQEGPPFLPESFD 318
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 38/71 (53%), Positives = 52/71 (73%), Gaps = 1/71 (1%)
Query: 421 FSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
F P SFDR+LLDAPCS +G RP + A T++ + ++ QR++F AV+L++PGGI+VY
Sbjct: 312 FLPESFDRILLDAPCSGMGQRPNM-AYSSTLKEVTSYQPLQRKLFTVAVKLLKPGGILVY 370
Query: 481 STCTINPGENE 491
STCTI ENE
Sbjct: 371 STCTITLSENE 381
>gi|449270283|gb|EMC80975.1| Putative methyltransferase NSUN6 [Columba livia]
Length = 469
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 113/347 (32%), Positives = 181/347 (52%), Gaps = 56/347 (16%)
Query: 8 SYSPLLRWNPQVEEYFIRAYGADH-------------FSRISKALTRPSCYSCIRVNTLK 54
S+ P + + +VEEY + + + + + L+ P ++ +RVNT
Sbjct: 2 SFFPKISFQCEVEEYLTKVFRNNELVTALGTQEAECKYQSLLSRLSHPPSFTTVRVNTHL 61
Query: 55 TTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTID 114
+ +V + L IQ + + + + P L ++ + GP
Sbjct: 62 ASVKNVKKLLFEEIQK--------------QFKGLCVPVLEHPKLHDILLIPVIGPRR-- 105
Query: 115 YGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGG 174
+ K EVIV +C AVLRGA VYVPG+++ S ++ GD+V+V +E
Sbjct: 106 ---DLKKHASEVIVGAQCGYAVLRGAHVYVPGIISASRFMKAGDLVSVYSDIE------- 155
Query: 175 WGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRAS---EGIAVDMHNRIFQ 231
G +G++ FE +++G G + +SR+ IF +S G+ V M ++
Sbjct: 156 -------GKCKRGAKE----FEGVKVFLGNGISELSRSEIFSSSCPLNGMGVKMIEPVYL 204
Query: 232 LPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVA 291
PSF +VL +FLQNLPS+V +H L+PQ GERILDMCAAPGGKTT +A+L+ D+GEV+A
Sbjct: 205 SPSFDNVLPSNLFLQNLPSVVVSHILNPQPGERILDMCAAPGGKTTHLAALMHDQGEVIA 264
Query: 292 VDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAV---RRKNESNDEP 335
+D++ NKV I++ A + L CI T+ D KA+ +R++E + P
Sbjct: 265 MDKTANKVKKIKQNAELLQLNCIKTFCYDGTKALSVEKREDEQDGPP 311
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/71 (54%), Positives = 52/71 (73%), Gaps = 1/71 (1%)
Query: 421 FSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
FSP SFDR+LLDAPCS +G RP + A T++ + + QR++F AV+L++PGGI+VY
Sbjct: 312 FSPESFDRILLDAPCSGMGQRPNM-AYSSTLKEVTSSQPLQRKLFTVAVKLLKPGGILVY 370
Query: 481 STCTINPGENE 491
STCTI ENE
Sbjct: 371 STCTITLSENE 381
>gi|440792124|gb|ELR13352.1| NOL1/NOP2/sun family domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 469
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 108/318 (33%), Positives = 163/318 (51%), Gaps = 23/318 (7%)
Query: 22 YFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASS 81
Y A G + L P + +RVN L+T D ++L +Q + +
Sbjct: 24 YHPSAQGTSDVEVWRRVLAAPPNVTSLRVNCLRTDVDSACRQLADHLQRAAPKAGPETTD 83
Query: 82 VKG-----RLQNGTISESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAV 136
G + Q + P L V+ + +GPH EP PP +V R C EAV
Sbjct: 84 ASGDEGAEQPQREQAMPTVHPVLRDVIILPCTGPHK----REPKYPP--AVVDRSCGEAV 137
Query: 137 LRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFE 196
LRGA +Y GV+A + + KGD+V+V V + GG +TRG + +
Sbjct: 138 LRGAHIYAAGVIAAAGDLHKGDMVSVFVDDGK----GGKTGKLTRGEFVHDAG------- 186
Query: 197 RSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHA 256
+ L++G G M R +F + G+A++M +I++ PS V++ +FLQN+PSIV H
Sbjct: 187 -NWLFVGNGRMTMGRGQMFSGTSGVAIEMVEQIYETPSLNGVMDDLLFLQNIPSIVVGHL 245
Query: 257 LDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITT 316
LDPQ G+ ILDMCAAPGGKTT IA+L D + A+D++ KV +Q+L +G+ +T
Sbjct: 246 LDPQPGDLILDMCAAPGGKTTHIAALANDRARIFALDKNVGKVEGVQRLCQRLGITSVTA 305
Query: 317 YKLDALKAVRRKNESNDE 334
LDA KA+ + + D+
Sbjct: 306 LTLDATKALLPADSAPDQ 323
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Query: 416 ENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPG 475
E G+ ++FDR+LLD PCS LG RPRL +T +L+ H YQR++ AV L++PG
Sbjct: 326 EKITGWRAHTFDRILLDPPCSGLGNRPRL-KDTQTWSALQTHAAYQRKIIHTAVPLLKPG 384
Query: 476 GIIVYSTCTINPGENE 491
G +VYSTCTI+P ENE
Sbjct: 385 GTLVYSTCTISPLENE 400
>gi|157817079|ref|NP_001100837.1| NOP2/Sun domain family, member 6 [Rattus norvegicus]
gi|149021140|gb|EDL78747.1| NOL1/NOP2/Sun domain family, member 6 (predicted) [Rattus
norvegicus]
gi|171846678|gb|AAI62024.1| Nsun6 protein [Rattus norvegicus]
Length = 476
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 114/332 (34%), Positives = 172/332 (51%), Gaps = 53/332 (15%)
Query: 11 PLLRWNPQVEEYFIRAY-------------GADHFSRISKALTRPSCYSCIRVNTLKTTT 57
P + P+VE Y ++ +F + L+ P ++ +RVNT +
Sbjct: 5 PKISLRPEVENYLKESFLNEEVVSASSQQEAERNFETLLLRLSHPPLFTTVRVNTHLGSV 64
Query: 58 DDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGY 117
+ V LL +Q + +I Q P L V+ + +GP
Sbjct: 65 EHVRGLLLEELQK--------------QFGGSSIPVLQHPALPDVLLIPMTGPRK----- 105
Query: 118 EPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGL 177
++ EVIV +C AVLRGA VYVPGV++ S ++ GDVV+V +
Sbjct: 106 NIERQQCEVIVGAQCGNAVLRGAHVYVPGVVSASKFMKAGDVVSVYSDI----------- 154
Query: 178 GITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRAS---EGIAVDMHNRIFQLPS 234
+G +G++ F+ + +++G G + +SR IF +GI + M I+ PS
Sbjct: 155 ---KGKCKKGAKE----FDGTKVFLGNGISELSRKDIFNGLPDLKGIGIRMTEPIYLSPS 207
Query: 235 FYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDR 294
F +VL G IFLQNLPS V AH LDPQ GE+ILD+CAAPGGKTT IA+L+RD+GEV+A+D+
Sbjct: 208 FDNVLSGYIFLQNLPSTVVAHVLDPQPGEKILDLCAAPGGKTTHIAALMRDQGEVIALDK 267
Query: 295 SHNKVMDIQKLAAEMGLKCITTYKLDALKAVR 326
KV +++ A+ +GL I + DA KA++
Sbjct: 268 ILTKVTKLKQNASLLGLHSIRAFCFDATKALK 299
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 52/71 (73%), Gaps = 1/71 (1%)
Query: 421 FSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
F P SFDR+LLDAPCS LG RP + A T++ + ++ QR++ + AV+L++PGG++VY
Sbjct: 312 FLPESFDRILLDAPCSGLGQRPNM-ACTWTLKEVTSYQPLQRKLLNVAVRLLKPGGVLVY 370
Query: 481 STCTINPGENE 491
STCT+ ENE
Sbjct: 371 STCTVTLAENE 381
>gi|260783662|ref|XP_002586892.1| hypothetical protein BRAFLDRAFT_116066 [Branchiostoma floridae]
gi|229272021|gb|EEN42903.1| hypothetical protein BRAFLDRAFT_116066 [Branchiostoma floridae]
Length = 471
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 116/344 (33%), Positives = 170/344 (49%), Gaps = 55/344 (15%)
Query: 11 PLLRWNPQVEEYFIRAY-------------GADHFSRISKALTRPSCYSCIRVNTLKTTT 57
P L +P VE + + Y F L+ P Y+ +RV T+ T
Sbjct: 12 PRLSLDPDVENHIKKTYCNSQVVAAIGKEEAERRFHSTIDRLSLPPGYTTVRVCTVSRTR 71
Query: 58 DDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGY 117
D + ++L +++ + +A V+ P L V+ + +GPH +
Sbjct: 72 DLIREELQQLLKKEYTKKAAPCPPVEPH-----------PVLSDVLLIPTTGPHPNLQHH 120
Query: 118 EPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGL 177
KE++V C A+LRGA ++ PGV+ ++ V+ GD V+V V VE
Sbjct: 121 T-----KEIMVDIYCGAAILRGAHIFAPGVLGATADVQAGDQVSVYVDVE---------- 165
Query: 178 GITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASE----GIAVDMHNRIFQLP 233
G L+G Q PY R +++G G A MSR IF ++ GI V+M + ++ P
Sbjct: 166 ----GKCLRGFQ-KPYSGPR--VFVGNGVARMSRDDIFSVAQEQLSGIGVEMTSPLYGCP 218
Query: 234 SFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVD 293
DV+ IFLQNLPS V H LDPQ GER+LDMCAAPGGKTT +A+L+ ++G V+A D
Sbjct: 219 PLNDVMSDSIFLQNLPSTVAGHVLDPQPGERVLDMCAAPGGKTTHLATLMNNQGTVIAFD 278
Query: 294 RSHNKVMDIQKLAAEMGLKCITTYKLDALK-----AVRRKNESN 332
+S KV + A +GL CI Y D K AV K+E++
Sbjct: 279 KSQGKVDKVMANARRLGLTCIQAYMFDGGKSASEAAVCEKDETS 322
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 53/71 (74%), Gaps = 1/71 (1%)
Query: 421 FSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
+ PN+FDRVL+DAPCSALG RP L + +++L+++ YQRR+F AVQ+++ G +VY
Sbjct: 328 YPPNTFDRVLVDAPCSALGQRPAL-GNKMKLKTLKSYPSYQRRLFPAAVQVLKTGCTLVY 386
Query: 481 STCTINPGENE 491
STCT+ ENE
Sbjct: 387 STCTLTLEENE 397
>gi|118085726|ref|XP_425980.2| PREDICTED: putative methyltransferase NSUN6 [Gallus gallus]
Length = 469
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 114/346 (32%), Positives = 174/346 (50%), Gaps = 55/346 (15%)
Query: 8 SYSPLLRWNPQVEEYFIRAY-------------GADHFSRISKALTRPSCYSCIRVNTLK 54
S+ P + + +VEEY + + + + L+ P + +RVNT
Sbjct: 2 SFFPKISFQREVEEYLSKVFRNNELITALGTKEAESKYQSLLSHLSHPPAITTVRVNTNL 61
Query: 55 TTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTID 114
+ V + LL IQ + Q + + P L ++ + GP
Sbjct: 62 ASVRHVKKLLLEEIQK--------------QFQGICVPVLEHPQLRDILLIPSIGPRK-- 105
Query: 115 YGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGG 174
+ K EVIV +C AVLRGA VYVPG+++ S V+ GD+V+V +E
Sbjct: 106 ---DLKKHESEVIVGAQCGYAVLRGAHVYVPGIISTSRFVKTGDLVSVYSDIE------- 155
Query: 175 WGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRA---SEGIAVDMHNRIFQ 231
G +G++ FE +++G G + +SR+ IF + G+ V M ++
Sbjct: 156 -------GKCKRGAKE----FEGVKVFLGNGISELSRSDIFGLNGRTTGLGVRMTEPVYL 204
Query: 232 LPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVA 291
PSF VL +FLQNLPS+V +H L+PQ GERILDMCAAPGGKTT +A+L+ D+GEV+A
Sbjct: 205 SPSFESVLPSHLFLQNLPSVVVSHVLNPQPGERILDMCAAPGGKTTHLATLMHDQGEVIA 264
Query: 292 VDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA--VRRKNESNDEP 335
+D+ NKV I++ A + L CI + D KA V ++ + +EP
Sbjct: 265 MDKIANKVKKIKQNAELLQLNCIKAFCYDGTKALSVEKREDKQEEP 310
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 52/71 (73%), Gaps = 1/71 (1%)
Query: 421 FSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
F P SFDR+LLDAPCS +G RP + A T++ + ++ QR++F AV+L++PGG++VY
Sbjct: 312 FLPESFDRILLDAPCSGMGQRPNM-AYSSTLKEVTSYQPLQRKLFTVAVKLLKPGGVLVY 370
Query: 481 STCTINPGENE 491
STCTI ENE
Sbjct: 371 STCTITLSENE 381
>gi|126341505|ref|XP_001377237.1| PREDICTED: putative methyltransferase NSUN6 [Monodelphis domestica]
Length = 467
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 112/344 (32%), Positives = 173/344 (50%), Gaps = 53/344 (15%)
Query: 8 SYSPLLRWNPQVEEYFIRAYGADH-------------FSRISKALTRPSCYSCIRVNTLK 54
S P + P+VE+Y ++ + F + L+ P ++ +RVNT
Sbjct: 2 SLFPNISLRPEVEDYLRSSFKNEEMTTALGVQEAERKFEALLNHLSHPPAFTTVRVNTHL 61
Query: 55 TTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTID 114
+ V LL + + ++ Q P ++ V+ + GP
Sbjct: 62 VSVKHVKDLLL--------------EEIHKQFNGLSVPILQHPDVQDVLLIPVIGPRN-- 105
Query: 115 YGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGG 174
+K P EVIV C AVLRGA VYVPG+M+ S ++ GDVV+V +E
Sbjct: 106 ---NINKQPLEVIVGAHCGNAVLRGAHVYVPGIMSASKFMKAGDVVSVYSDIE------- 155
Query: 175 WGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRAS---EGIAVDMHNRIFQ 231
G +G++ F +++G G + +SR IF + +GI + M ++
Sbjct: 156 -------GKCKKGAKE----FSGKKVFLGNGISELSRNEIFSLNSPLKGIGIRMTEPVYL 204
Query: 232 LPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVA 291
PSF +VL +FLQNLPS+V +H L+PQ GE+ILDMCAAPGGKTT IA+L+RD+GEV+A
Sbjct: 205 SPSFDNVLSSSLFLQNLPSVVVSHVLNPQPGEKILDMCAAPGGKTTHIAALMRDQGEVIA 264
Query: 292 VDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEP 335
+D+ +KV I++ AA + L CI + + KA+ + + P
Sbjct: 265 MDKIPSKVEKIKQNAALLQLNCIRAFCCNGTKALGKIEDGQGGP 308
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 58/82 (70%), Gaps = 4/82 (4%)
Query: 413 GRAENSKG---FSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAV 469
G+ E+ +G FSP SFDR+LLDAPCS +G RP + T++ + ++ QR++F AV
Sbjct: 299 GKIEDGQGGPPFSPESFDRILLDAPCSGMGQRPNM-TYTWTLKEVMSYQPLQRKLFTVAV 357
Query: 470 QLVRPGGIIVYSTCTINPGENE 491
QL++PGG++VYSTCTI ENE
Sbjct: 358 QLLKPGGVLVYSTCTITLAENE 379
>gi|56118618|ref|NP_001008125.1| NOP2/Sun domain family, member 6 [Xenopus (Silurana) tropicalis]
gi|51703758|gb|AAH81330.1| nsun6 protein [Xenopus (Silurana) tropicalis]
Length = 467
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 108/306 (35%), Positives = 164/306 (53%), Gaps = 40/306 (13%)
Query: 32 FSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTI 91
F + L P ++ +RVNTL T+ ++V LL + + I
Sbjct: 39 FENLLNHLAHPPSFTTVRVNTLSTSIENVKSLLL--------------DEIHQQFPGVNI 84
Query: 92 SESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACS 151
Q P L ++ + GP + P +VIV +C AVLRGA VY G+++ S
Sbjct: 85 PILQHPVLHDLLLIPVIGPRKTLKHH-----PVQVIVGAQCGNAVLRGAHVYAAGIVSAS 139
Query: 152 SHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSR 211
++ GD V+V +E G +G++ F + ++IG G + +SR
Sbjct: 140 KWMKAGDEVSVFSDIE--------------GKCKRGAKE----FLGTKIFIGNGVSELSR 181
Query: 212 AGIFRAS---EGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDM 268
IF ++ +G + M ++ PSF +VL G IFLQNLPS V +H L+PQ GERILDM
Sbjct: 182 NEIFCSNNPVKGKGIRMTEPVYLSPSFDNVLSGYIFLQNLPSAVVSHVLNPQPGERILDM 241
Query: 269 CAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRK 328
CAAPGGKTT IA+L++D+GEV+A+D+ NKV I+ A+ + LKCI + ++ KAVR +
Sbjct: 242 CAAPGGKTTHIATLMKDQGEVIAMDKIANKVEKIKHNASVLKLKCIKAFCFNSTKAVRDQ 301
Query: 329 NESNDE 334
N +++
Sbjct: 302 NSPSEQ 307
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 50/71 (70%), Gaps = 1/71 (1%)
Query: 421 FSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
F P SFDR+LLDAPCS +G RP + +++ L ++ QR++F AV+L+RPGG +VY
Sbjct: 313 FLPKSFDRILLDAPCSGMGQRPNM-VCPFSLKELTSYQPLQRKLFTAAVELLRPGGTLVY 371
Query: 481 STCTINPGENE 491
STCT+ ENE
Sbjct: 372 STCTVTLSENE 382
>gi|224044808|ref|XP_002192436.1| PREDICTED: putative methyltransferase NSUN6 [Taeniopygia guttata]
Length = 469
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 113/346 (32%), Positives = 175/346 (50%), Gaps = 58/346 (16%)
Query: 8 SYSPLLRWNPQVEEYFIRAY-------------GADHFSRISKALTRPSCYSCIRVNTLK 54
S+ P + + +VEEY + + + + L+ P ++ +RVNT
Sbjct: 2 SFFPKIVFQHEVEEYLTKVFRNNELISALGTQEAEKKYQSLLSHLSHPPAFTTVRVNTHL 61
Query: 55 TTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTID 114
+ V + L IQ + + + + P L+ ++ + GP
Sbjct: 62 ASVQHVKKMLFEEIQK--------------QFKGLCVPVLEHPKLQDILLIPVIGP---- 103
Query: 115 YGYEPD--KPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLD 172
PD K EVIV +C AVLRGA VYVPG+++ S V+ GD+V+V +E
Sbjct: 104 ---RPDLKKHASEVIVGAQCGYAVLRGAHVYVPGIVSTSRFVKAGDLVSVYSDIE----- 155
Query: 173 GGWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRAS---EGIAVDMHNRI 229
G +G++ F +++G G + +SR+ IF +S +G+ + M +
Sbjct: 156 ---------GKCKRGAKE----FNGVKVFLGNGISELSRSEIFSSSGPLKGLGIRMIEPV 202
Query: 230 FQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEV 289
+ PSF +VL +FLQNLPS+V +H L+PQ GE+ILDMCAAPGGKTT IA+L+ D+GEV
Sbjct: 203 YLSPSFDNVLPSHLFLQNLPSVVVSHVLNPQPGEKILDMCAAPGGKTTHIAALMHDQGEV 262
Query: 290 VAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVR-RKNESNDE 334
+A+D+ NKV I++ A + L CI + D KA+ K E E
Sbjct: 263 IAMDKIANKVKKIKQNAEFLQLNCIKAFCYDGTKALLVEKTEDKQE 308
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 52/71 (73%), Gaps = 1/71 (1%)
Query: 421 FSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
F P SFDR+LLDAPCS +G RP + A T++ + ++ QR++F AV+L++PGG++VY
Sbjct: 312 FLPESFDRILLDAPCSGMGQRPNM-AYSSTLKEVTSYQPLQRKLFTVAVKLLKPGGVLVY 370
Query: 481 STCTINPGENE 491
STCTI ENE
Sbjct: 371 STCTITLSENE 381
>gi|395539982|ref|XP_003771941.1| PREDICTED: putative methyltransferase NSUN6 [Sarcophilus harrisii]
Length = 469
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 112/336 (33%), Positives = 170/336 (50%), Gaps = 53/336 (15%)
Query: 8 SYSPLLRWNPQVEEYF---------IRAYGADH----FSRISKALTRPSCYSCIRVNTLK 54
S P + P+VE+Y + GA F + L+ P ++ +RVNT
Sbjct: 2 SLFPKISLRPEVEDYLRASFKNEEIVTVLGAQEAERKFETLLNYLSHPPAFTTVRVNTHL 61
Query: 55 TTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTID 114
+ V LL + + + ++ Q P + ++ + GP
Sbjct: 62 ASVKHVKDLLL--------------EEINKQFKGLSVPILQHPDVWDMLLIPVIGPRK-- 105
Query: 115 YGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGG 174
+K P EVIV C AVLRGA VYVPG+M+ S ++ GDVV+V +E
Sbjct: 106 ---NINKQPSEVIVGAHCGNAVLRGAHVYVPGIMSASRFMKAGDVVSVYSDIE------- 155
Query: 175 WGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRAS---EGIAVDMHNRIFQ 231
G +G++ F+ +++G G + +SR +F S +GI + M ++
Sbjct: 156 -------GKCKKGAKE----FDGKKVFLGNGISELSRNEMFSLSSPLKGIGIRMTEPVYL 204
Query: 232 LPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVA 291
PSF +VL +FLQNLPS V +H L+PQ GE+ILDMCAAPGGKTT IA+L+ D+GEV+A
Sbjct: 205 SPSFDNVLSSALFLQNLPSAVVSHVLNPQPGEKILDMCAAPGGKTTHIAALMHDQGEVIA 264
Query: 292 VDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRR 327
+D+ NKV I++ AA + L CI + + KA+ +
Sbjct: 265 LDKIPNKVEKIKQNAALLHLNCIRAFCYNGTKALGK 300
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 58/84 (69%), Gaps = 6/84 (7%)
Query: 413 GRAENSK-----GFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQ 467
G+ EN + FSP SFDR+LLDAPCS +G RP + A T++ + ++ QR++F
Sbjct: 299 GKVENGQVTGGPPFSPESFDRILLDAPCSGMGQRPNM-AYTWTLKEVTSYQPLQRKLFTV 357
Query: 468 AVQLVRPGGIIVYSTCTINPGENE 491
AVQL++PGG++VYSTCT+ ENE
Sbjct: 358 AVQLLKPGGVLVYSTCTVTLAENE 381
>gi|296206262|ref|XP_002750130.1| PREDICTED: putative methyltransferase NSUN6 isoform 1 [Callithrix
jacchus]
Length = 468
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 111/335 (33%), Positives = 170/335 (50%), Gaps = 53/335 (15%)
Query: 8 SYSPLLRWNPQVEEYF---------IRAYGADH----FSRISKALTRPSCYSCIRVNTLK 54
S P + P+VE Y + A+G + F + K L+ P ++ +RVNT
Sbjct: 2 SVFPKISLRPEVENYLKEGFVNKEIVSAFGKEEAERKFETLLKHLSHPPSFTTVRVNTHL 61
Query: 55 TTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTID 114
+ V LL +Q +L +I + P L+ V+ + GP
Sbjct: 62 ASVQHVKNLLLDELQK--------------QLNGLSIPILEHPDLQDVLLIPVIGPRK-- 105
Query: 115 YGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGG 174
K E IV +C AVLRGA VY PG+++ S ++ GDV++V +
Sbjct: 106 ---NIKKQQCEAIVGAQCGNAVLRGAHVYAPGIVSASKFMKAGDVISVYSDI-------- 154
Query: 175 WGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRAS---EGIAVDMHNRIFQ 231
+G +G++ F+ + +++G G + +SR IF +G+ + M ++
Sbjct: 155 ------KGKCKKGAKE----FDGTKVFLGNGISKLSRKEIFNGLPELKGMGIRMTEPVYL 204
Query: 232 LPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVA 291
PSF +VL +FLQNLPS V H L+PQ GE+ILD+CAAPGGKTT IA+L+ D+GEV+A
Sbjct: 205 SPSFDNVLPRYLFLQNLPSAVVTHVLNPQPGEKILDLCAAPGGKTTHIAALMHDQGEVIA 264
Query: 292 VDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVR 326
+D+ NKV IQ+ A+ +GL I + D KAV+
Sbjct: 265 LDKIFNKVEKIQQNASLLGLNSIRAFCFDGTKAVK 299
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Query: 416 ENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPG 475
E F P +FDR+LLDAPCS +G RP + A +++ + ++ QR++F AVQL++PG
Sbjct: 306 EEEPPFLPETFDRILLDAPCSGMGQRPNM-ACTWSLKEVTSYQPLQRKLFTVAVQLLKPG 364
Query: 476 GIIVYSTCTINPGENE 491
G++VYSTCTI ENE
Sbjct: 365 GVLVYSTCTITLAENE 380
>gi|390465106|ref|XP_003733344.1| PREDICTED: putative methyltransferase NSUN6 isoform 2 [Callithrix
jacchus]
Length = 379
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 111/335 (33%), Positives = 170/335 (50%), Gaps = 53/335 (15%)
Query: 8 SYSPLLRWNPQVEEYF---------IRAYGADH----FSRISKALTRPSCYSCIRVNTLK 54
S P + P+VE Y + A+G + F + K L+ P ++ +RVNT
Sbjct: 2 SVFPKISLRPEVENYLKEGFVNKEIVSAFGKEEAERKFETLLKHLSHPPSFTTVRVNTHL 61
Query: 55 TTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTID 114
+ V LL +Q +L +I + P L+ V+ + GP
Sbjct: 62 ASVQHVKNLLLDELQK--------------QLNGLSIPILEHPDLQDVLLIPVIGPRK-- 105
Query: 115 YGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGG 174
K E IV +C AVLRGA VY PG+++ S ++ GDV++V +
Sbjct: 106 ---NIKKQQCEAIVGAQCGNAVLRGAHVYAPGIVSASKFMKAGDVISVYSDI-------- 154
Query: 175 WGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRAS---EGIAVDMHNRIFQ 231
+G +G++ F+ + +++G G + +SR IF +G+ + M ++
Sbjct: 155 ------KGKCKKGAKE----FDGTKVFLGNGISKLSRKEIFNGLPELKGMGIRMTEPVYL 204
Query: 232 LPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVA 291
PSF +VL +FLQNLPS V H L+PQ GE+ILD+CAAPGGKTT IA+L+ D+GEV+A
Sbjct: 205 SPSFDNVLPRYLFLQNLPSAVVTHVLNPQPGEKILDLCAAPGGKTTHIAALMHDQGEVIA 264
Query: 292 VDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVR 326
+D+ NKV IQ+ A+ +GL I + D KAV+
Sbjct: 265 LDKIFNKVEKIQQNASLLGLNSIRAFCFDGTKAVK 299
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 416 ENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPG 475
E F P +FDR+LLDAPCS +G RP + A +++ + ++ QR++F AVQL++PG
Sbjct: 306 EEEPPFLPETFDRILLDAPCSGMGQRPNM-ACTWSLKEVTSYQPLQRKLFTVAVQLLKPG 364
>gi|149412200|ref|XP_001509484.1| PREDICTED: putative methyltransferase NSUN6 [Ornithorhynchus
anatinus]
Length = 466
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 112/331 (33%), Positives = 164/331 (49%), Gaps = 53/331 (16%)
Query: 11 PLLRWNPQVEEYFIRAY-------------GADHFSRISKALTRPSCYSCIRVNTLKTTT 57
P + P+VEE+ A+ F + K L+ P ++ +RVNT +
Sbjct: 5 PKIALRPEVEEHLRGAFMNVEVITAVGRQAAEARFEALLKRLSHPPAFTTVRVNTRLASV 64
Query: 58 DDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGY 117
V L IQ + Q ++ Q P L ++ + GP
Sbjct: 65 QQVKSLLCEEIQK--------------QFQGLSVPVLQHPRLPDLLLIPVIGPRK----- 105
Query: 118 EPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGL 177
+ ++ P IV +C AVLRGA +YVPG++A S ++ G+VV+V VE G G
Sbjct: 106 DVEEWPIRAIVGAQCGNAVLRGAHIYVPGILAASGGMKAGEVVSVYSDVEGKCRKGAKG- 164
Query: 178 GITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRAS---EGIAVDMHNRIFQLPS 234
F+ + ++G G + +SR IF ++ +GI + M ++ PS
Sbjct: 165 -----------------FDGTQAFLGNGISELSRREIFGSNSPLKGIGIRMVEPVYLSPS 207
Query: 235 FYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDR 294
F +VL G +FLQNLPS V +H L PQ GERILDMCAAPGGKTT IA+L+ D GEV+A+D+
Sbjct: 208 FDNVLPGYLFLQNLPSAVASHVLGPQPGERILDMCAAPGGKTTHIAALMEDRGEVIALDK 267
Query: 295 SHNKVMDIQKLAAEMGLKCITTYKLDALKAV 325
NKV I++ A + L CI + D KA+
Sbjct: 268 IANKVEKIKQTAKLLQLNCIKAFCYDGTKAL 298
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 56/82 (68%), Gaps = 4/82 (4%)
Query: 413 GRAENSKG---FSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAV 469
G+ E +G F P +FDR+LLDAPCS LG RP + A T++ + ++ QRR+ AV
Sbjct: 301 GKTEAGRGEPPFPPETFDRILLDAPCSGLGQRPNM-ACTWTLKEVTSYPPLQRRLLAVAV 359
Query: 470 QLVRPGGIIVYSTCTINPGENE 491
+L++PGG++VYSTCT+ ENE
Sbjct: 360 ELLKPGGVLVYSTCTVTLAENE 381
>gi|311265698|ref|XP_003130779.1| PREDICTED: putative methyltransferase NSUN6 [Sus scrofa]
Length = 472
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 109/323 (33%), Positives = 168/323 (52%), Gaps = 40/323 (12%)
Query: 16 NPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSE 75
N +V F + F + + L+ P ++ +RVNT LA +Q+ +
Sbjct: 23 NKEVVSAFGKQEAERKFETLLQNLSHPPSFTTVRVNTH-----------LASVQHVKTLL 71
Query: 76 ADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEA 135
D ++ + + Q P L+ V+ + GP + EVIV +C +
Sbjct: 72 HD---ELQKQFNGLSFPVLQHPDLQDVLLIPVIGPRK-----NIKQQHCEVIVGAQCGNS 123
Query: 136 VLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYF 195
VLRGA VYVPG+++ S ++ GD V+V + +G +G++ F
Sbjct: 124 VLRGAHVYVPGIVSASKFMKGGDTVSVYSDI--------------KGKCKKGAKE----F 165
Query: 196 ERSGLYIGQGTAMMSRAGIFRAS---EGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIV 252
+ + +++G G + +SR IF +GI + M ++ PSF DVL G +FLQNLPS V
Sbjct: 166 DGTKIFLGNGISELSRKEIFSGLPDLKGIGIRMTEPVYLSPSFDDVLPGYLFLQNLPSAV 225
Query: 253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK 312
H LDPQ GERILD+CAAPGGKTT IA+ +RD+GEV+A+D+ NKV I++ A +GL
Sbjct: 226 VTHVLDPQPGERILDLCAAPGGKTTHIAARMRDQGEVIALDKIANKVEKIKQNALLLGLN 285
Query: 313 CITTYKLDALKAVRRKNESNDEP 335
I + D KA++ ++ EP
Sbjct: 286 SIRAFCFDGTKALKLDIDTEGEP 308
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 415 AENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRP 474
E F P SFDR+LLDAPCS +G RP + A T++ + ++ QR++F AV+L++P
Sbjct: 304 TEGEPPFLPESFDRILLDAPCSGMGQRPNM-ACTWTLKEVTSYQPLQRKLFTVAVELLKP 362
Query: 475 GGIIVYSTCTINPGENEALCA 495
GG++VYSTCT+ ENE A
Sbjct: 363 GGVLVYSTCTVTLAENEEQVA 383
>gi|317420025|emb|CBN82061.1| methyltransferase NSUN6 [Dicentrarchus labrax]
Length = 467
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 113/346 (32%), Positives = 174/346 (50%), Gaps = 45/346 (13%)
Query: 8 SYSPLLRWNPQVEEYFIRAY-------GADH------FSRISKALTRPSCYSCIRVNTLK 54
S P + P+V ++ + DH F ++ L+ P Y+C+R +T
Sbjct: 2 SVFPKISLKPEVADFLKSVFVNKEVLAAVDHQVAECRFQKLLTCLSHPPSYTCVRASTHL 61
Query: 55 TTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTI- 113
+++ KL ++ S + SV+ + +IP V+ + GP +
Sbjct: 62 APLEEIRHKLGEELKKQMCSSSAEEVSVQ------ILPHPRIPD---VLLLPVDGPRYVR 112
Query: 114 DYGYEPDKP-PKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLD 172
+ G P +P EV+V +C AVLRGA V+ PG++A ++ GD+V+V +E
Sbjct: 113 NAGATPVEPLSSEVVVDAQCGSAVLRGAHVFAPGIVASPKFMKTGDLVSVFSDLE----- 167
Query: 173 GGWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIF---RASEGIAVDMHNRI 229
G T QG + +++G G A M R +F + ++GI V M +
Sbjct: 168 ---GKCTRAATSFQGKR----------VFVGNGVAQMDRFSLFCTDKPAKGIGVRMVEPL 214
Query: 230 FQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEV 289
+Q PSF VL FLQNLPS+V H L P+ GERILDMCAAPGGKT+ IA+L+ D+GEV
Sbjct: 215 YQSPSFDGVLPSLAFLQNLPSVVVGHVLGPRPGERILDMCAAPGGKTSHIAALMGDQGEV 274
Query: 290 VAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEP 335
VA+DR NK+ I++ A + L+ IT Y ++ +AV + P
Sbjct: 275 VALDRIRNKIDRIRENAQMLHLRSITAYCFNSTQAVSSDPAHTEGP 320
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 49/71 (69%), Gaps = 1/71 (1%)
Query: 421 FSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
F P SFDRVLLDAPCS LG RP + ++ + ++ QR++F AV+L++ GG++VY
Sbjct: 322 FPPESFDRVLLDAPCSGLGQRPNM-GTTWGLKEICSYQPLQRKLFHAAVRLLKKGGVLVY 380
Query: 481 STCTINPGENE 491
STCT+ ENE
Sbjct: 381 STCTVTLAENE 391
>gi|148227140|ref|NP_001090297.1| NOP2/Sun domain family, member 6 [Xenopus laevis]
gi|114108045|gb|AAI23126.1| MGC154309 protein [Xenopus laevis]
Length = 467
Score = 167 bits (424), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 104/306 (33%), Positives = 163/306 (53%), Gaps = 40/306 (13%)
Query: 32 FSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTI 91
F + K L P ++ +RVN L T+ ++V ++ + + + I
Sbjct: 39 FENLLKHLAHPPSFTTVRVNPLSTSIENV--------------KSLLKEEIHKQFPGLNI 84
Query: 92 SESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACS 151
Q P + ++ + GP + P +VIV +C AVLRGA VY G+++ S
Sbjct: 85 PILQHPIVPDLLLIPVIGPRRTLKQH-----PVQVIVGAQCGNAVLRGAHVYAAGIVSAS 139
Query: 152 SHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSR 211
++ GD V+V +E G +G++ F + ++IG G + +SR
Sbjct: 140 KWMKAGDEVSVFSDIE--------------GKCKRGAKE----FTGNKIFIGNGISELSR 181
Query: 212 AGIF---RASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDM 268
IF +G + M ++ PSF +VL G IFLQNLPS V +H L+PQ GERILDM
Sbjct: 182 NEIFCCNNPVKGKGIKMTEPVYLSPSFDNVLSGYIFLQNLPSAVVSHVLNPQPGERILDM 241
Query: 269 CAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRK 328
CAAPGGKTT IA+L+ D+GEV+A+D+ +KV I++ A+ + LKCI + ++ KAVR +
Sbjct: 242 CAAPGGKTTHIATLMEDQGEVIALDKIASKVEKIKQNASVLKLKCIKAFCFNSTKAVRDQ 301
Query: 329 NESNDE 334
N +++
Sbjct: 302 NCPDEQ 307
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 50/71 (70%), Gaps = 1/71 (1%)
Query: 421 FSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
F P SFDR+LLDAPCS +G RP + +++ L ++ QR++F AV+L+RPGG +VY
Sbjct: 313 FFPESFDRILLDAPCSGMGQRPNM-VCPFSLKELTSYQPLQRKLFSAAVELLRPGGTLVY 371
Query: 481 STCTINPGENE 491
STCT+ ENE
Sbjct: 372 STCTVTLSENE 382
>gi|148676130|gb|EDL08077.1| NOL1/NOP2/Sun domain family 6, isoform CRA_b [Mus musculus]
Length = 494
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 111/337 (32%), Positives = 167/337 (49%), Gaps = 53/337 (15%)
Query: 6 RYSYSPLLRWNPQVEEYFIRAY-------------GADHFSRISKALTRPSCYSCIRVNT 52
R P + P+VE Y ++ F + L+ P + +RVNT
Sbjct: 18 RMYVFPKISLRPEVENYLKESFLNEEAVSASSRQEAERKFETLLLRLSHPPSMTTVRVNT 77
Query: 53 LKTTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHT 112
+ V LL +Q + +I Q P L V+ + +GP
Sbjct: 78 HLGSVQHVRGLLLEELQK--------------QFGESSIPVVQHPALPDVLLIPMTGPRK 123
Query: 113 IDYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLD 172
++ EVIV +C AVLRGA VYVPG+++ S ++ GDV++V +
Sbjct: 124 -----NIERQQGEVIVGAQCGNAVLRGAHVYVPGIVSASKFMKAGDVISVYSDIN----- 173
Query: 173 GGWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRAS---EGIAVDMHNRI 229
G +G++ F+ + +++G G + +SR IF +GI + M I
Sbjct: 174 ---------GKCKKGAKE----FDGTKVFLGNGISELSRKDIFNGLPDLKGIGIRMTEPI 220
Query: 230 FQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEV 289
+ PSF +VL IFLQNLPS V AH LDPQ GE+ILDMCAAPGGKTT A+L++D+GEV
Sbjct: 221 YLSPSFDNVLPSYIFLQNLPSTVVAHVLDPQPGEKILDMCAAPGGKTTHTAALMQDKGEV 280
Query: 290 VAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVR 326
+A+D+ KV +++ A+ +GL I + DA KA++
Sbjct: 281 IALDKILTKVNKLKQNASLLGLHSIRAFCFDATKALK 317
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
Query: 416 ENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPG 475
E F P SFDR++LDAPCS +G RP + A T++ + ++ QR++ AVQL++PG
Sbjct: 325 EGGPPFLPESFDRIILDAPCSGMGQRPNM-ACTWTLKEVTSYQPLQRKLLHVAVQLLKPG 383
Query: 476 GIIVYSTCTINPGENE 491
G++VYSTCTI ENE
Sbjct: 384 GVLVYSTCTITLAENE 399
>gi|260099658|ref|NP_083226.3| putative methyltransferase NSUN6 isoform a [Mus musculus]
gi|260099660|ref|NP_001159413.1| putative methyltransferase NSUN6 isoform a [Mus musculus]
gi|119372268|sp|Q7TS68.2|NSUN6_MOUSE RecName: Full=Putative methyltransferase NSUN6; AltName:
Full=NOL1/NOP2/Sun domain family member 6
gi|12855745|dbj|BAB30442.1| unnamed protein product [Mus musculus]
gi|26346707|dbj|BAC37002.1| unnamed protein product [Mus musculus]
gi|74208798|dbj|BAE21163.1| unnamed protein product [Mus musculus]
gi|148676131|gb|EDL08078.1| NOL1/NOP2/Sun domain family 6, isoform CRA_c [Mus musculus]
Length = 476
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 110/332 (33%), Positives = 166/332 (50%), Gaps = 53/332 (15%)
Query: 11 PLLRWNPQVEEYFIRAY-------------GADHFSRISKALTRPSCYSCIRVNTLKTTT 57
P + P+VE Y ++ F + L+ P + +RVNT +
Sbjct: 5 PKISLRPEVENYLKESFLNEEAVSASSRQEAERKFETLLLRLSHPPSMTTVRVNTHLGSV 64
Query: 58 DDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGY 117
V LL +Q + +I Q P L V+ + +GP
Sbjct: 65 QHVRGLLLEELQK--------------QFGESSIPVVQHPALPDVLLIPMTGPRK----- 105
Query: 118 EPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGL 177
++ EVIV +C AVLRGA VYVPG+++ S ++ GDV++V +
Sbjct: 106 NIERQQGEVIVGAQCGNAVLRGAHVYVPGIVSASKFMKAGDVISVYSDI----------- 154
Query: 178 GITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRAS---EGIAVDMHNRIFQLPS 234
G +G++ F+ + +++G G + +SR IF +GI + M I+ PS
Sbjct: 155 ---NGKCKKGAKE----FDGTKVFLGNGISELSRKDIFNGLPDLKGIGIRMTEPIYLSPS 207
Query: 235 FYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDR 294
F +VL IFLQNLPS V AH LDPQ GE+ILDMCAAPGGKTT A+L++D+GEV+A+D+
Sbjct: 208 FDNVLPSYIFLQNLPSTVVAHVLDPQPGEKILDMCAAPGGKTTHTAALMQDKGEVIALDK 267
Query: 295 SHNKVMDIQKLAAEMGLKCITTYKLDALKAVR 326
KV +++ A+ +GL I + DA KA++
Sbjct: 268 ILTKVNKLKQNASLLGLHSIRAFCFDATKALK 299
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
Query: 416 ENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPG 475
E F P SFDR++LDAPCS +G RP + A T++ + ++ QR++ AVQL++PG
Sbjct: 307 EGGPPFLPESFDRIILDAPCSGMGQRPNM-ACTWTLKEVTSYQPLQRKLLHVAVQLLKPG 365
Query: 476 GIIVYSTCTINPGENE 491
G++VYSTCTI ENE
Sbjct: 366 GVLVYSTCTITLAENE 381
>gi|410963274|ref|XP_003988190.1| PREDICTED: putative methyltransferase NSUN6 [Felis catus]
Length = 469
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 102/298 (34%), Positives = 156/298 (52%), Gaps = 40/298 (13%)
Query: 32 FSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTI 91
F + L+ P ++ +RVNT + V LL ++ + ++
Sbjct: 39 FETLLNHLSHPPSFTTVRVNTHLASVQHVKNLLL--------------DELRKQFNGLSV 84
Query: 92 SESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACS 151
Q P L+ V+ + GP K E +V +C AVLRGA VYVPG+++ S
Sbjct: 85 PILQHPDLQDVLLIPIIGPRR-----NIKKQQCEAVVGAQCGNAVLRGAHVYVPGIVSAS 139
Query: 152 SHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSR 211
++ GDV++V + +G +G++ F+ + +++G G + +SR
Sbjct: 140 KFMKAGDVISVYSDI--------------KGKCKKGAKE----FDGTKVFLGNGISELSR 181
Query: 212 AGIFRAS---EGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDM 268
IF +GI + M I+ PSF +VL +FLQNLPS V H LDPQ GE+ILD+
Sbjct: 182 KEIFNGLPELKGIGIRMTEPIYLSPSFDNVLPNYLFLQNLPSAVVTHVLDPQPGEKILDL 241
Query: 269 CAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVR 326
CAAPGGKTT IA+L+RD+GEV+A+D+ NKV I++ A +GL I + D KA++
Sbjct: 242 CAAPGGKTTHIAALMRDQGEVIALDKISNKVEKIKQNALLLGLNSIKAFCFDGTKALK 299
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 53/77 (68%), Gaps = 1/77 (1%)
Query: 415 AENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRP 474
AE F SFDR+LLDAPCS +G RP + A T++ + ++ QR++F AV+L++P
Sbjct: 306 AEGKPPFLRESFDRILLDAPCSGMGQRPNM-ACSWTLKEVTSYQPLQRKLFTVAVELLKP 364
Query: 475 GGIIVYSTCTINPGENE 491
GG++VYSTCTI ENE
Sbjct: 365 GGVLVYSTCTITLAENE 381
>gi|354482489|ref|XP_003503430.1| PREDICTED: putative methyltransferase NSUN6 [Cricetulus griseus]
gi|344245942|gb|EGW02046.1| Putative methyltransferase NSUN6 [Cricetulus griseus]
Length = 476
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 107/326 (32%), Positives = 169/326 (51%), Gaps = 53/326 (16%)
Query: 17 PQVEEYFIRAY-------------GADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQK 63
P+VE Y +++ F + L P ++ +RVNT + + V
Sbjct: 11 PEVENYLKQSFLNKEVVSASSKQEAERKFEALLIRLAHPPSFTTVRVNTHLASVEYVRDL 70
Query: 64 LLAIIQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGYEPDKPP 123
LL +Q + + + Q P L V+ + +GP ++
Sbjct: 71 LLEELQK--------------QFRGLRVPVLQHPTLPDVLLIPVTGPRR-----NIERRQ 111
Query: 124 KEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGT 183
EVIV +C AVLRGA VYVPG+++ S ++ GDV++V + +G
Sbjct: 112 CEVIVGAQCGNAVLRGAHVYVPGIVSASKFMKAGDVISVYSDI--------------KGK 157
Query: 184 VLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRA---SEGIAVDMHNRIFQLPSFYDVLE 240
+G++ F+ + +++G G + +SR IF +GI + M I+ PSF +VL
Sbjct: 158 CKKGAKE----FDGTKVFLGNGISELSRKDIFNGIPDLKGIGIRMTEPIYLSPSFDNVLP 213
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
+FLQNLPS V AH L+PQ GE+ILD+CAAPGGKTT IA+L++D+GEV+A+D+ NKV
Sbjct: 214 SYLFLQNLPSAVVAHVLNPQPGEKILDLCAAPGGKTTHIAALMQDQGEVIALDKVLNKVE 273
Query: 301 DIQKLAAEMGLKCITTYKLDALKAVR 326
+++ A+ +GL I + DA KA++
Sbjct: 274 KLKQNASLLGLHSIRAFCFDATKALK 299
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 54/76 (71%), Gaps = 1/76 (1%)
Query: 416 ENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPG 475
E + F P SFDR+LLDAPCS +G RP + A T++ + ++ QR++ + AV+L++PG
Sbjct: 307 EGTPPFLPESFDRILLDAPCSGMGQRPNM-ACTWTLKEVTSYQPLQRKLLNVAVRLLKPG 365
Query: 476 GIIVYSTCTINPGENE 491
G++VYSTCT+ ENE
Sbjct: 366 GVLVYSTCTVTLAENE 381
>gi|31753229|gb|AAH53751.1| NOL1/NOP2/Sun domain family member 6 [Mus musculus]
Length = 476
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 109/332 (32%), Positives = 166/332 (50%), Gaps = 53/332 (15%)
Query: 11 PLLRWNPQVEEYFIRAY-------------GADHFSRISKALTRPSCYSCIRVNTLKTTT 57
P + P+VE Y ++ F + L+ P + +RVNT +
Sbjct: 5 PKISLRPEVENYLKESFLNEEAVSASSRQEAERKFETLLLRLSHPPSMTTVRVNTHLGSV 64
Query: 58 DDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGY 117
V LL +Q + +I Q P L V+ + +GP
Sbjct: 65 QHVRGLLLEELQK--------------QFGESSIPVVQHPALPDVLLIPMTGPRK----- 105
Query: 118 EPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGL 177
++ EVIV +C AVLRGA VYVPG+++ S ++ GDV++V +
Sbjct: 106 NIERQQGEVIVGAQCGNAVLRGAHVYVPGIVSASKFMKAGDVISVYSDI----------- 154
Query: 178 GITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRAS---EGIAVDMHNRIFQLPS 234
G +G++ F+ + +++G G + +SR IF +GI + M I+ PS
Sbjct: 155 ---NGKCKKGAKE----FDGTKVFLGNGISELSRKDIFNGLPDLKGIGIRMTEPIYLSPS 207
Query: 235 FYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDR 294
F +VL IFLQNLPS V AH LDPQ GE+IL+MCAAPGGKTT A+L++D+GEV+A+D+
Sbjct: 208 FDNVLPSYIFLQNLPSTVVAHVLDPQPGEKILEMCAAPGGKTTHTAALMQDKGEVIALDK 267
Query: 295 SHNKVMDIQKLAAEMGLKCITTYKLDALKAVR 326
KV +++ A+ +GL I + DA KA++
Sbjct: 268 ILTKVNKLKQNASLLGLHSIRAFCFDATKALK 299
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
Query: 416 ENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPG 475
E F P SFDR++LDAPCS +G RP + A T++ + ++ QR++ AVQL++PG
Sbjct: 307 EGGPPFLPESFDRIILDAPCSGMGQRPNM-ACTWTLKEVTSYQPLQRKLLHVAVQLLKPG 365
Query: 476 GIIVYSTCTINPGENE 491
G++VYSTCTI ENE
Sbjct: 366 GVLVYSTCTITLAENE 381
>gi|428181325|gb|EKX50189.1| hypothetical protein GUITHDRAFT_104001 [Guillardia theta CCMP2712]
Length = 536
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 111/362 (30%), Positives = 169/362 (46%), Gaps = 62/362 (17%)
Query: 8 SYSPLLRWNPQVEEY----FIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQK 63
+++ L W + ++ +R Y D R+ AL RP +SC+R NT++ + +++ +
Sbjct: 2 AHAAALAWRTHLPDHVRQPLLRFYEEDELERVCNALARPPAHSCVRANTVRISGEELAGR 61
Query: 64 LLAIIQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGYEPDKPP 123
+ ++ E S G + G + ++ G V+ P D E
Sbjct: 62 MREELERLAVREG--PSEHAGVSRYGEVRVHEVIGDAVVIR-----PDEHD-AREILPEG 113
Query: 124 KEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGT 183
+E++VSR+CAEAVLRG+ +++PG+M CS H KGDVV V V+ L G
Sbjct: 114 RELVVSRRCAEAVLRGSHIFIPGMMGCSPHTAKGDVVTVLCDVQDRFLRGA------STH 167
Query: 184 VLQGSQTDPYYFE------------------------RSGLY------------------ 201
+L + DP + S LY
Sbjct: 168 ILSTRKLDPKRMKGFVSNHMHEVSDEKKQQFRLNNSKLSHLYGDTNRSSDASFPELPEGI 227
Query: 202 --IGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDP 259
IG+G + R A EG+ M IF+ P +L G +++QN PSIV H LDP
Sbjct: 228 VVIGKGVMQVDRRVAMSAKEGLGCIMTECIFRAPPLNGLLPGLMYVQNFPSIVVGHVLDP 287
Query: 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKL 319
Q GERILDMCA+PGGKTT A++++ EG V A+DR+ K I++ A +GLK + K
Sbjct: 288 QPGERILDMCASPGGKTTHAAAIMQGEGSVTAIDRTQAKAAVIRENAQHLGLKNVWVLKG 347
Query: 320 DA 321
D+
Sbjct: 348 DS 349
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/66 (59%), Positives = 46/66 (69%), Gaps = 1/66 (1%)
Query: 426 FDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTI 485
FDR++LD PC+ALGLRPRL I+ R YQRRM AV L++ GG +VYSTCTI
Sbjct: 391 FDRIILDPPCTALGLRPRLAVDIPPIEMERTPA-YQRRMMHVAVGLLKTGGRLVYSTCTI 449
Query: 486 NPGENE 491
NP ENE
Sbjct: 450 NPEENE 455
>gi|148676129|gb|EDL08076.1| NOL1/NOP2/Sun domain family 6, isoform CRA_a [Mus musculus]
Length = 455
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 105/298 (35%), Positives = 157/298 (52%), Gaps = 40/298 (13%)
Query: 32 FSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTI 91
F + L+ P + +RVNT + V LL +Q + +I
Sbjct: 18 FETLLLRLSHPPSMTTVRVNTHLGSVQHVRGLLLEELQK--------------QFGESSI 63
Query: 92 SESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACS 151
Q P L V+ + +GP ++ EVIV +C AVLRGA VYVPG+++ S
Sbjct: 64 PVVQHPALPDVLLIPMTGPRK-----NIERQQGEVIVGAQCGNAVLRGAHVYVPGIVSAS 118
Query: 152 SHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSR 211
++ GDV++V + G +G++ F+ + +++G G + +SR
Sbjct: 119 KFMKAGDVISVYSDI--------------NGKCKKGAKE----FDGTKVFLGNGISELSR 160
Query: 212 AGIFRAS---EGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDM 268
IF +GI + M I+ PSF +VL IFLQNLPS V AH LDPQ GE+ILDM
Sbjct: 161 KDIFNGLPDLKGIGIRMTEPIYLSPSFDNVLPSYIFLQNLPSTVVAHVLDPQPGEKILDM 220
Query: 269 CAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVR 326
CAAPGGKTT A+L++D+GEV+A+D+ KV +++ A+ +GL I + DA KA++
Sbjct: 221 CAAPGGKTTHTAALMQDKGEVIALDKILTKVNKLKQNASLLGLHSIRAFCFDATKALK 278
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
Query: 416 ENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPG 475
E F P SFDR++LDAPCS +G RP + A T++ + ++ QR++ AVQL++PG
Sbjct: 286 EGGPPFLPESFDRIILDAPCSGMGQRPNM-ACTWTLKEVTSYQPLQRKLLHVAVQLLKPG 344
Query: 476 GIIVYSTCTINPGENE 491
G++VYSTCTI ENE
Sbjct: 345 GVLVYSTCTITLAENE 360
>gi|432928676|ref|XP_004081173.1| PREDICTED: putative methyltransferase NSUN6-like isoform 2 [Oryzias
latipes]
Length = 466
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 105/298 (35%), Positives = 161/298 (54%), Gaps = 33/298 (11%)
Query: 32 FSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTI 91
F + L+ P ++C+R +T +++ KL + SS D ++SV+ +
Sbjct: 39 FQNLLLCLSHPPLHTCVRASTHLAPLEEIRSKLQEELSQQTSS--DSSASVQ------IL 90
Query: 92 SESQIPGLEYVVFVKGSGPHTI-DYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMAC 150
S Q+P V+ + GP + + G ++ EV+V +C AVLRGA V+ PG++A
Sbjct: 91 SHPQVPD---VLLLPVDGPRYVRNPGARVEQLSSEVVVGAQCGNAVLRGAHVFAPGIVAS 147
Query: 151 SSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMS 210
+++ GDVV+V +E TRG + F+ + +++G G A M
Sbjct: 148 PKYMKVGDVVSVFSDLEG---------RCTRGAL---------SFQGNKVFVGNGVAEMD 189
Query: 211 RAGIFRASE---GIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILD 267
R+ IF E G+ V M +++ PSF VL FLQN PS+V H L P+ GERILD
Sbjct: 190 RSSIFCTDEHPRGVGVRMVEPLYRSPSFDGVLPSLAFLQNFPSVVVGHVLGPRPGERILD 249
Query: 268 MCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAV 325
MCAAPGGKT IA+L+ D+GEVVA+DR NK+ I++ A + L+ I Y + ++AV
Sbjct: 250 MCAAPGGKTCHIAALMGDQGEVVALDRIRNKIARIRQNAETLQLQSIKAYCFNGIQAV 307
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 52/71 (73%), Gaps = 1/71 (1%)
Query: 421 FSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
F P SFDRVLLDAPCS LG RP + A+ +++ + ++ QR++F AV+L++ GG++VY
Sbjct: 320 FPPESFDRVLLDAPCSGLGQRPTM-ASTWSLKEICSYPPLQRKLFHAAVRLLKKGGVLVY 378
Query: 481 STCTINPGENE 491
STCT+ ENE
Sbjct: 379 STCTVTLAENE 389
>gi|351705079|gb|EHB07998.1| Putative methyltransferase NSUN6 [Heterocephalus glaber]
Length = 476
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 107/332 (32%), Positives = 166/332 (50%), Gaps = 53/332 (15%)
Query: 11 PLLRWNPQVEEY----FI---------RAYGADHFSRISKALTRPSCYSCIRVNTLKTTT 57
P + P+VE Y F+ +A F + L+ P ++ +RVNT +
Sbjct: 5 PKISLRPEVENYLKEGFVNNEVVSASGKAAAERKFEALLNHLSHPPSFTTVRVNTHLASV 64
Query: 58 DDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGY 117
V + LL +Q + ++ Q P L+ V+ + GP
Sbjct: 65 QHVKELLLDELQQ--------------QFNGLSVPVLQHPDLQDVLLIPVIGPRK----- 105
Query: 118 EPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGL 177
+ E +V +C AVLRGA VY PG+++ SS ++ GDV++V +
Sbjct: 106 NIKRQQCEAVVGAQCGSAVLRGAHVYTPGIVSASSFMKAGDVISVYSDI----------- 154
Query: 178 GITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRAS---EGIAVDMHNRIFQLPS 234
+G +G++ F+ + +++G G + +SR IF GI + M I+ PS
Sbjct: 155 ---KGKCKKGARE----FDGTKIFLGNGISTLSRKEIFSGLPRLRGIGIRMTEPIYLSPS 207
Query: 235 FYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDR 294
F +VL +FLQNLPS V H L+PQ GE+ILD+CAAPGGKTT IA+L+ D+GEV+A+D+
Sbjct: 208 FDNVLPSYLFLQNLPSAVVTHVLNPQPGEKILDLCAAPGGKTTHIAALMHDQGEVIALDK 267
Query: 295 SHNKVMDIQKLAAEMGLKCITTYKLDALKAVR 326
NKV I++ A +GL I + D KA++
Sbjct: 268 IANKVEKIKQNALLLGLNSIKAFCFDGTKALK 299
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 54/76 (71%), Gaps = 1/76 (1%)
Query: 416 ENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPG 475
E + FSP SFDR+LLDAPCS +G RP + A T++ + ++ QR++F AVQL++PG
Sbjct: 307 EGTPPFSPESFDRILLDAPCSGMGQRPNM-ACTWTLKEVTSYQPLQRKLFPVAVQLLKPG 365
Query: 476 GIIVYSTCTINPGENE 491
G +VYSTCT+ ENE
Sbjct: 366 GTLVYSTCTVTLEENE 381
>gi|55732314|emb|CAH92860.1| hypothetical protein [Pongo abelii]
Length = 357
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 112/354 (31%), Positives = 173/354 (48%), Gaps = 56/354 (15%)
Query: 8 SYSPLLRWNPQVEEYF---------IRAYGADH----FSRISKALTRPSCYSCIRVNTLK 54
S P + P+VE Y + A G F + K L+ P ++ +RVNT
Sbjct: 2 SVFPKISLRPEVENYLKEGFMNKEIVTALGKQEAERKFETLLKHLSHPPSFTTVRVNTHL 61
Query: 55 TTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTID 114
+ V LL +Q + ++ Q P L+ V+ + GP
Sbjct: 62 ASVQHVKNLLLDELQK--------------QFNGLSVPILQHPDLQDVLLIPVIGPRK-- 105
Query: 115 YGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGG 174
K E IV +C AVLRGA VY PG+++ S ++ GDV++V +
Sbjct: 106 ---NIKKQQCEAIVGAQCGNAVLRGAHVYAPGIVSASKFMKAGDVISVYSDI-------- 154
Query: 175 WGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRAS---EGIAVDMHNRIFQ 231
+G +G++ F+ + +++G G + +SR IF +G+ + M ++
Sbjct: 155 ------KGKCKKGAKE----FDGTKVFLGNGISELSRKEIFSGLPELKGMGIRMTEPVYL 204
Query: 232 LPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVA 291
PSF +VL +FLQNLPS + H L+PQ GE+ILD+CAAPGGKTT IA+L+ D+GEV+A
Sbjct: 205 SPSFDNVLPRYLFLQNLPSALVTHVLNPQPGEKILDLCAAPGGKTTHIAALMHDQGEVIA 264
Query: 292 VDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRR---KNESNDEPNMCNSKD 342
+D+ NKV I++ A +GL I + D KAV+ ++ D P + S D
Sbjct: 265 LDKIFNKVEKIKQNALLLGLNSIRAFCFDGTKAVKLDMVEDTEGDPPFLPESFD 318
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 416 ENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMF 465
E F P SFDR+LLDAPCS +G RP + A +++ + ++ QR++F
Sbjct: 307 EGDPPFLPESFDRILLDAPCSGMGQRPNM-ACTWSLKEVASYQPLQRKLF 355
>gi|149743533|ref|XP_001497025.1| PREDICTED: putative methyltransferase NSUN6 [Equus caballus]
Length = 469
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 106/317 (33%), Positives = 161/317 (50%), Gaps = 43/317 (13%)
Query: 32 FSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTI 91
F + L+ P ++ +RVNT + V LL +Q + ++
Sbjct: 39 FETLLNHLSHPPSFTTVRVNTHLASVQHVKNLLLDELQK--------------QFNGLSV 84
Query: 92 SESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACS 151
Q P L+ V+ + GP K E IV +C AVLRGA VYVPG+++ S
Sbjct: 85 PVLQHPDLQDVLLIPVIGPRK-----NIRKQQCEAIVGAQCGSAVLRGAHVYVPGIVSAS 139
Query: 152 SHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSR 211
++ GDV++V + +G +G++ F+ + +++G G + +SR
Sbjct: 140 KFMKAGDVISVYSDI--------------KGKCKRGAKE----FDGTKVFLGNGISELSR 181
Query: 212 AGIF---RASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDM 268
IF +G+ + M ++ PSF VL IFLQNLPS + H LDPQ GE+ILD+
Sbjct: 182 REIFSGLHELKGVGIRMTEPVYLSPSFDKVLPSYIFLQNLPSALATHVLDPQPGEKILDL 241
Query: 269 CAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRR- 327
CAAPGGKTT IA+L+ D+GEV+A+D+ NKV I++ A +GL I + D KA++
Sbjct: 242 CAAPGGKTTHIAALMHDQGEVIALDKISNKVEKIKQNALLLGLNSIRAFCFDGTKALKLD 301
Query: 328 --KNESNDEPNMCNSKD 342
KN + P + S D
Sbjct: 302 MVKNTEGEPPFLPESFD 318
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Query: 416 ENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPG 475
E F P SFDR+LLDAPCS +G RP + A T++ + ++ QR++F AV+L++PG
Sbjct: 307 EGEPPFLPESFDRILLDAPCSGMGQRPNM-ACSWTLKEVTSYQPLQRKLFTVAVKLLKPG 365
Query: 476 GIIVYSTCTINPGENE 491
G++VYSTCTI ENE
Sbjct: 366 GVLVYSTCTITLAENE 381
>gi|291402236|ref|XP_002717453.1| PREDICTED: NOL1/NOP2/Sun domain family, member 6 [Oryctolagus
cuniculus]
Length = 469
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 108/343 (31%), Positives = 169/343 (49%), Gaps = 53/343 (15%)
Query: 8 SYSPLLRWNPQVEEYFIRAY-------------GADHFSRISKALTRPSCYSCIRVNTLK 54
S P + P+VE Y + F + L+ P ++ +RVNT
Sbjct: 2 SVFPKISLRPEVEHYLKEGFLNKEVVSTSGKQEAERKFETLLNRLSHPPSFTTVRVNTH- 60
Query: 55 TTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTID 114
LA IQ + D ++ + ++ Q P L+ V+ + GP
Sbjct: 61 ----------LASIQCVKNLLHD---ELQKQFNGLSVPVFQHPDLQDVLLIPVVGPRK-- 105
Query: 115 YGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGG 174
K EV+V +C AVLRGA +YVPG++A S ++ GDVV++ +
Sbjct: 106 ---NIKKQQCEVVVGAQCGNAVLRGAHIYVPGIVAASKFMKAGDVVSIYSDI-------- 154
Query: 175 WGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRAS---EGIAVDMHNRIFQ 231
+G +G++ F+ + +++G G + +SR IF +GI + M ++
Sbjct: 155 ------KGKCKKGAKE----FDGTKIFLGNGISELSRKEIFNGLPELKGIGIRMTEPVYL 204
Query: 232 LPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVA 291
PSF +VL ++LQNLPS V H L+PQ GE+ILD+CAAPGGKTT IA+L+ D+GEV+A
Sbjct: 205 SPSFDNVLSSYLYLQNLPSAVVTHVLNPQPGEKILDLCAAPGGKTTHIAALMHDQGEVIA 264
Query: 292 VDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDE 334
+D+ NKV I++ A +GL I + D KA++ + E
Sbjct: 265 LDKISNKVEKIKQNALLLGLNSIRAFCFDGTKALKLDMSQDTE 307
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Query: 416 ENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPG 475
E F P SFDR+LLDAPCS +G RP + A T++ + ++ QR++F AVQL++PG
Sbjct: 307 EGEPPFLPESFDRILLDAPCSGMGQRPNM-ACTWTLKEVTSYQPLQRKLFTVAVQLLKPG 365
Query: 476 GIIVYSTCTINPGENE 491
G++VYSTCT+ ENE
Sbjct: 366 GVLVYSTCTVTLAENE 381
>gi|402879734|ref|XP_003903486.1| PREDICTED: putative methyltransferase NSUN6 [Papio anubis]
Length = 469
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 108/335 (32%), Positives = 166/335 (49%), Gaps = 53/335 (15%)
Query: 8 SYSPLLRWNPQVEEYF---------IRAYGADH----FSRISKALTRPSCYSCIRVNTLK 54
S P + P+VE Y + A G F + K L+ P ++ +RVNT
Sbjct: 2 SIFPKISLRPEVENYLKESFVNKEIVTALGKQEAERKFETLLKHLSHPPSFTTVRVNTHL 61
Query: 55 TTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTID 114
+ V L +Q + ++ Q P L+ V+ + GP
Sbjct: 62 ASVQHVKNLLFDELQK--------------QFNGLSVPILQHPDLQDVLLIPVIGPRK-- 105
Query: 115 YGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGG 174
K E IV +C AVLRGA VY PG+++ S ++ GDV++V +
Sbjct: 106 ---NIKKQQCEAIVGAQCGNAVLRGAHVYAPGIVSASKFMKAGDVISVYSDI-------- 154
Query: 175 WGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRAS---EGIAVDMHNRIFQ 231
+G +G++ F+ + +++G G + +SR IF +G+A+ M ++
Sbjct: 155 ------KGKCKKGARE----FDGTKVFLGNGISELSRKEIFNGLPELKGMAIRMTEPVYL 204
Query: 232 LPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVA 291
PSF +VL +FLQNLPS + H L+PQ GE+ILD+CAAPGGKTT IA+L+ D+GEV+A
Sbjct: 205 SPSFDNVLPRYLFLQNLPSALVTHVLNPQPGEKILDLCAAPGGKTTHIAALMHDQGEVIA 264
Query: 292 VDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVR 326
+D+ NKV I++ A +GL I + D KAV+
Sbjct: 265 LDKIFNKVEKIKQNALLLGLNSIRAFCFDGTKAVK 299
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
Query: 416 ENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPG 475
E F P SFDR+LLDAPCS +G RP + A +++ L ++ QR++F AVQL++P
Sbjct: 307 EGEPPFLPESFDRILLDAPCSGMGQRPNM-ACTWSLKELASYQPLQRKLFTAAVQLLKPE 365
Query: 476 GIIVYSTCTINPGENE 491
G++VYSTCTI ENE
Sbjct: 366 GVLVYSTCTITLAENE 381
>gi|198464825|ref|XP_001353377.2| GA10764 [Drosophila pseudoobscura pseudoobscura]
gi|198149898|gb|EAL30884.2| GA10764 [Drosophila pseudoobscura pseudoobscura]
Length = 438
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 125/383 (32%), Positives = 167/383 (43%), Gaps = 107/383 (27%)
Query: 119 PDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLG 178
PD KEVIV C A+LRGA +Y PGV+A S+ + + V V L G G
Sbjct: 99 PDPTLKEVIVDTSCGAALLRGAHIYAPGVLAMESNTQLQECVNVYA-----DLAGKCKRG 153
Query: 179 ITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIF----RASEGIAVDMHNRIFQLPS 234
+T Y +Y+G G +M R ++ A GIAV+M + + +PS
Sbjct: 154 MTT-----------RYENSEKVYVGVGKVLMQRYQLYNDKDEAPTGIAVEMQSNVSGVPS 202
Query: 235 FYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDR 294
D+ + LQNLPSIV LDPQ GERILDMCAAPG
Sbjct: 203 LGDLSSADALLQNLPSIVCVRVLDPQPGERILDMCAAPG--------------------- 241
Query: 295 SHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNY--ITSQTSD 352
NK I +L + G C+ V N ++ M NNY I + D
Sbjct: 242 --NKTTHIAELMGDQG--CV----------VALDNSASRVRGMLGKLGNNYRSIQAHVFD 287
Query: 353 SMKLHKEVPSIAAEGLNGDKSCKEKVSNEKGVERTYVSKADTRKNMRRMRNGPGRNQCLG 412
S K ++AA + D SC
Sbjct: 288 STK------AVAA---SSDSSCP------------------------------------- 301
Query: 413 GRAENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLV 472
++ F SFDR+LLDAPCS LG RP+L + + L+++ QRR+ QAVQL+
Sbjct: 302 ----SAPPFPCASFDRILLDAPCSGLGNRPQLLCNIKQAKILKSYPNIQRRLLAQAVQLL 357
Query: 473 RPGGIIVYSTCTINPGENEALCA 495
RPGGI+VYSTCT+ E E++ A
Sbjct: 358 RPGGILVYSTCTVTEAECESIVA 380
>gi|344277638|ref|XP_003410607.1| PREDICTED: putative methyltransferase NSUN6 [Loxodonta africana]
Length = 469
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 111/343 (32%), Positives = 172/343 (50%), Gaps = 55/343 (16%)
Query: 11 PLLRWNPQVEEYF---------IRAYGADH----FSRISKALTRPSCYSCIRVNTLKTTT 57
P + P+VE Y I + G F + L+ P ++ +RVNT +
Sbjct: 5 PKISLRPEVENYLKEGFMNKEVITSLGKQEAERKFQTLLHHLSHPPSFTTVRVNTRLASV 64
Query: 58 DDVIQKLLAIIQNSGSSEADVASSVKGRLQNG-TISESQIPGLEYVVFVKGSGPHTIDYG 116
+ V LL +Q NG ++ Q P L+ V+ + GP
Sbjct: 65 EHVKNLLLDELQKQS---------------NGLSVPVLQHPDLQDVLLIPVIGPRK---- 105
Query: 117 YEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWG 176
K E IV +C AVLRGA VYVPG+++ S ++ GDV++V +
Sbjct: 106 -NIKKQQCEAIVGAQCGNAVLRGAHVYVPGIVSASKFMKAGDVISVYSDI---------- 154
Query: 177 LGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRAS---EGIAVDMHNRIFQLP 233
+G +G++ F+ + +++G G + +SR +F +GI + M ++ P
Sbjct: 155 ----KGKCKKGAKE----FDGTKVFLGNGISELSRKELFSGLPELKGIGIRMTEPVYLSP 206
Query: 234 SFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVD 293
SF +VL +FLQNLPS V AH L+PQ GE+ILD+CAAPGGKTT IA+L+ D+GEV+A+D
Sbjct: 207 SFDNVLPSYLFLQNLPSAVVAHVLNPQPGEKILDLCAAPGGKTTHIAALMHDQGEVIALD 266
Query: 294 RSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPN 336
+ +KV I++ A +GL I + D KA++ + + E N
Sbjct: 267 KISSKVEKIKQNALLLGLNSIRAFCFDGTKALQIEMFEDTEGN 309
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 54/76 (71%), Gaps = 1/76 (1%)
Query: 416 ENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPG 475
E + F P SFDR+LLDAPCS +G RP + A T++ + ++ QR++F AVQL++PG
Sbjct: 307 EGNPPFLPESFDRILLDAPCSGMGQRPNM-ACTWTLKEVTSYQPLQRKLFSVAVQLLKPG 365
Query: 476 GIIVYSTCTINPGENE 491
G++VYSTCTI ENE
Sbjct: 366 GVLVYSTCTITLAENE 381
>gi|297686139|ref|XP_002820622.1| PREDICTED: putative methyltransferase NSUN6 [Pongo abelii]
Length = 469
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 108/335 (32%), Positives = 166/335 (49%), Gaps = 53/335 (15%)
Query: 8 SYSPLLRWNPQVEEYF---------IRAYGADH----FSRISKALTRPSCYSCIRVNTLK 54
S P + P+VE Y + A G F + K L+ P ++ +RVNT
Sbjct: 2 SVFPKISLRPEVENYLKEGFMNKEIVTALGKQEAERKFETLLKHLSHPPSFTTVRVNTHL 61
Query: 55 TTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTID 114
+ V LL +Q + ++ Q P L+ V+ + GP
Sbjct: 62 ASVQHVKNLLLDELQK--------------QFNGLSVPILQHPDLQDVLLIPVIGPRK-- 105
Query: 115 YGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGG 174
K E IV +C AVLRGA VY PG+++ S ++ GDV++V +
Sbjct: 106 ---NIKKQQCEAIVGAQCGNAVLRGAHVYAPGIVSASKFMKAGDVISVYSDI-------- 154
Query: 175 WGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRAS---EGIAVDMHNRIFQ 231
+G +G++ F+ + +++G G + +SR IF +G+ + M ++
Sbjct: 155 ------KGKCKKGAKE----FDGTKVFLGNGISELSRKEIFSGLPELKGMGIRMTEPVYL 204
Query: 232 LPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVA 291
PSF +VL +FLQNLPS + H L+PQ GE+ILD+CAAPGGKTT IA+L+ D+GEV+A
Sbjct: 205 SPSFDNVLPRYLFLQNLPSALVTHVLNPQPGEKILDLCAAPGGKTTHIAALMHDQGEVIA 264
Query: 292 VDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVR 326
+D+ NKV I++ A +GL I + D KAV+
Sbjct: 265 LDKIFNKVEKIKQNALLLGLNSIRAFCFDGTKAVK 299
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 51/80 (63%), Gaps = 4/80 (5%)
Query: 415 AENSKGFSPN---SFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQL 471
E+++G P S+ R +++ C+ +G RP + A +++ + ++ QR++F AVQL
Sbjct: 303 VEDTEGEPPFIVVSYIRHMIEGECAGMGQRPNM-ACTWSLKEVASYQPLQRKLFTAAVQL 361
Query: 472 VRPGGIIVYSTCTINPGENE 491
++P G++VYSTCTI ENE
Sbjct: 362 LKPEGVLVYSTCTITLAENE 381
>gi|260809455|ref|XP_002599521.1| hypothetical protein BRAFLDRAFT_80967 [Branchiostoma floridae]
gi|229284800|gb|EEN55533.1| hypothetical protein BRAFLDRAFT_80967 [Branchiostoma floridae]
Length = 280
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 89/205 (43%), Positives = 121/205 (59%), Gaps = 21/205 (10%)
Query: 124 KEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGT 183
KE++V C A+LRGA ++ PGV+ ++ V+ GD V+V V VE G
Sbjct: 80 KEIMVDIHCGAAILRGAHIFAPGVLGATADVQAGDQVSVYVDVE--------------GK 125
Query: 184 VLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASE----GIAVDMHNRIFQLPSFYDVL 239
L+G Q PY R +++G G A MSR IF ++ GI V+M + ++ P DV+
Sbjct: 126 CLRGFQK-PYSGPR--VFVGNGVARMSRDDIFSVAQEQLSGIGVEMTSPLYGCPPLNDVM 182
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
IFLQNLPS V H LDPQ GER+LDMCAAPGGKTT +A+L+ ++G V+A+D+S KV
Sbjct: 183 SDSIFLQNLPSTVAGHVLDPQPGERVLDMCAAPGGKTTHLATLMSNQGAVIALDKSQGKV 242
Query: 300 MDIQKLAAEMGLKCITTYKLDALKA 324
+ A +GL CI Y D KA
Sbjct: 243 DKVMANARRLGLTCIQAYMFDGGKA 267
>gi|332217198|ref|XP_003257743.1| PREDICTED: putative methyltransferase NSUN6 [Nomascus leucogenys]
Length = 469
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 108/335 (32%), Positives = 166/335 (49%), Gaps = 53/335 (15%)
Query: 8 SYSPLLRWNPQVEEYF---------IRAYGADH----FSRISKALTRPSCYSCIRVNTLK 54
S P + P+VE Y + A G F + K L+ P ++ +RVNT
Sbjct: 2 SIFPKISLRPEVENYLKEGFMNKEIVTALGKQEAERKFETLLKHLSHPPSFTTVRVNTHL 61
Query: 55 TTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTID 114
+ V LL +Q + ++ Q P L+ V+ + GP
Sbjct: 62 ASVQHVKNLLLDELQK--------------QFNGLSVPILQHPDLQDVLLIPVIGPRK-- 105
Query: 115 YGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGG 174
K E IV +C AVLRGA VY PG+++ S ++ GDV++V +
Sbjct: 106 ---NIKKQQCEAIVGAQCGNAVLRGAHVYAPGIVSASKFMKAGDVISVYSDI-------- 154
Query: 175 WGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRAS---EGIAVDMHNRIFQ 231
+G +G++ F+ + +++G G + +SR IF +G+ + M ++
Sbjct: 155 ------KGKCKKGAKE----FDGTKVFLGNGISELSRKEIFSGLPELKGMGIRMTEPVYL 204
Query: 232 LPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVA 291
PSF +VL +FLQNLPS + H L+PQ GE+ILD+CAAPGGKTT IA+L+ D+GEV+A
Sbjct: 205 SPSFDNVLPRYLFLQNLPSALVTHVLNPQPGEKILDLCAAPGGKTTHIAALMHDQGEVIA 264
Query: 292 VDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVR 326
+D+ NKV I++ A +GL I + D KAV+
Sbjct: 265 LDKIFNKVEKIKQNALLLGLNSIRAFCFDGTKAVK 299
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
Query: 416 ENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPG 475
E F P SFDR+LLDAPCS +G RP + A +++ + ++ QR++F AVQL++P
Sbjct: 307 EGEPPFLPESFDRILLDAPCSGMGQRPNM-ACTWSLKEVASYQPLQRKLFTAAVQLLKPE 365
Query: 476 GIIVYSTCTINPGENE 491
G++VYSTCTI ENE
Sbjct: 366 GVLVYSTCTITLAENE 381
>gi|297300588|ref|XP_001094308.2| PREDICTED: putative methyltransferase NSUN6-like, partial [Macaca
mulatta]
Length = 307
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 108/335 (32%), Positives = 167/335 (49%), Gaps = 53/335 (15%)
Query: 8 SYSPLLRWNPQVEEYF---------IRAYGADH----FSRISKALTRPSCYSCIRVNTLK 54
S P + P+VE Y + A G F + K L+ P ++ +RVNT
Sbjct: 2 SIFPKISLRPEVENYLKEGFVNKEIVTALGKQEAERKFETLLKHLSHPPSFTTVRVNTHL 61
Query: 55 TTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTID 114
T+ V LL +Q + ++ Q P L+ V+ + GP
Sbjct: 62 TSVQHVKNLLLDELQK--------------QFNGLSVPILQHPDLQDVLLIPVIGPRK-- 105
Query: 115 YGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGG 174
K E IV +C AVLRGA VY PG+++ S ++ GDV++V +
Sbjct: 106 ---NIKKQQCEAIVGAQCGNAVLRGAHVYAPGIVSASKFMKAGDVISVYSDI-------- 154
Query: 175 WGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRAS---EGIAVDMHNRIFQ 231
+G +G++ F+ + +++G G + +SR IF +G+ + M ++
Sbjct: 155 ------KGKCKKGARE----FDGTKVFLGNGISELSRKEIFNGLPELKGMGIRMTEPVYL 204
Query: 232 LPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVA 291
PSF +VL +FLQNLPS + H L+PQ GE+ILD+CAAPGGKTT IA+L+ D+GEV+A
Sbjct: 205 SPSFDNVLPRYLFLQNLPSALVTHVLNPQPGEKILDLCAAPGGKTTHIAALMHDQGEVIA 264
Query: 292 VDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVR 326
+D+ +KV I++ A +GL I + D KAV+
Sbjct: 265 MDKIFSKVEKIKQNALLLGLNSIRAFCFDGTKAVK 299
>gi|349602997|gb|AEP98964.1| Putative methyltransferase NSUN6-like protein, partial [Equus
caballus]
Length = 444
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 107/326 (32%), Positives = 164/326 (50%), Gaps = 43/326 (13%)
Query: 32 FSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTI 91
F + L+ P ++ +RVNT + V LL +Q + ++
Sbjct: 14 FETLLNHLSHPPSFTTVRVNTHLASVQHVKNLLLDELQK--------------QFNGLSV 59
Query: 92 SESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACS 151
Q P L+ V+ + GP K E IV +C AVLRGA VYVPG+++ S
Sbjct: 60 PVLQHPDLQDVLLIPVIGPRK-----NIRKQQCEAIVGAQCGSAVLRGAHVYVPGIVSAS 114
Query: 152 SHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSR 211
++ GDV++V + +G +G++ F+ + +++G G + +SR
Sbjct: 115 KFMKAGDVISVYSDI--------------KGKCKRGAKE----FDGTKVFLGNGISELSR 156
Query: 212 AGIF---RASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDM 268
IF +G+ + M ++ PSF VL IFLQNLPS + H LDPQ GE+ILD+
Sbjct: 157 REIFSGLHELKGVGIRMTEPVYLSPSFDKVLPSCIFLQNLPSALATHVLDPQPGEKILDL 216
Query: 269 CAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRR- 327
CAAPGGKTT IA+L+ D+GEV+A+D+ NKV I++ A +GL I + D KA++
Sbjct: 217 CAAPGGKTTHIAALMHDQGEVIALDKISNKVEKIKQNALLLGLNSIRAFCFDGTKALKLD 276
Query: 328 --KNESNDEPNMCNSKDNNYITSQTS 351
KN + P + S D + + S
Sbjct: 277 MVKNTEGEPPFLPESFDRILLDAPCS 302
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Query: 416 ENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPG 475
E F P SFDR+LLDAPCS +G RP + A T++ + ++ QR++F AV+L++PG
Sbjct: 282 EGEPPFLPESFDRILLDAPCSGMGQRPNM-ACSWTLKEVTSYQPLQRKLFTVAVKLLKPG 340
Query: 476 GIIVYSTCTINPGENE 491
G++VYSTCTI ENE
Sbjct: 341 GVLVYSTCTITLAENE 356
>gi|432928674|ref|XP_004081172.1| PREDICTED: putative methyltransferase NSUN6-like isoform 1 [Oryzias
latipes]
Length = 459
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 104/297 (35%), Positives = 159/297 (53%), Gaps = 38/297 (12%)
Query: 32 FSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTI 91
F + L+ P ++C+R +T +++ KL + SS D ++SV+ +
Sbjct: 39 FQNLLLCLSHPPLHTCVRASTHLAPLEEIRSKLQEELSQQTSS--DSSASVQ------IL 90
Query: 92 SESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACS 151
S Q+P V+ + GP ++ + EV+V +C AVLRGA V+ PG++A
Sbjct: 91 SHPQVPD---VLLLPVDGPRRVE------QLSSEVVVGAQCGNAVLRGAHVFAPGIVASP 141
Query: 152 SHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSR 211
+++ GDVV+V +E TRG + F+ + +++G G A M R
Sbjct: 142 KYMKVGDVVSVFSDLEG---------RCTRGAL---------SFQGNKVFVGNGVAEMDR 183
Query: 212 AGIFRASE---GIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDM 268
+ IF E G+ V M +++ PSF VL FLQN PS+V H L P+ GERILDM
Sbjct: 184 SSIFCTDEHPRGVGVRMVEPLYRSPSFDGVLPSLAFLQNFPSVVVGHVLGPRPGERILDM 243
Query: 269 CAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAV 325
CAAPGGKT IA+L+ D+GEVVA+DR NK+ I++ A + L+ I Y + ++AV
Sbjct: 244 CAAPGGKTCHIAALMGDQGEVVALDRIRNKIARIRQNAETLQLQSIKAYCFNGIQAV 300
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 52/71 (73%), Gaps = 1/71 (1%)
Query: 421 FSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
F P SFDRVLLDAPCS LG RP + A+ +++ + ++ QR++F AV+L++ GG++VY
Sbjct: 313 FPPESFDRVLLDAPCSGLGQRPTM-ASTWSLKEICSYPPLQRKLFHAAVRLLKKGGVLVY 371
Query: 481 STCTINPGENE 491
STCT+ ENE
Sbjct: 372 STCTVTLAENE 382
>gi|90082132|dbj|BAE90347.1| unnamed protein product [Macaca fascicularis]
Length = 380
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 108/335 (32%), Positives = 167/335 (49%), Gaps = 53/335 (15%)
Query: 8 SYSPLLRWNPQVEEYF---------IRAYGADH----FSRISKALTRPSCYSCIRVNTLK 54
S P + P+VE Y + A G F + K L+ P ++ +RVNT
Sbjct: 2 SIFPKISLRPEVENYLKEGFVNKEIVTALGKQEAERKFETLLKHLSHPPSFTTVRVNTHL 61
Query: 55 TTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTID 114
T+ V LL +Q + ++ Q P L+ V+ + GP
Sbjct: 62 TSVQHVKNLLLDELQK--------------QFNGLSVPILQHPDLQDVLLIPVIGPRK-- 105
Query: 115 YGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGG 174
K E IV +C AVLRGA VY PG+++ S ++ GDV++V +
Sbjct: 106 ---NIKKQQCEAIVGAQCGNAVLRGAHVYAPGIVSASKFMKAGDVISVYSDI-------- 154
Query: 175 WGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRAS---EGIAVDMHNRIFQ 231
+G +G++ F+ + +++G G + +SR IF +G+ + M ++
Sbjct: 155 ------KGKCKKGARE----FDGTKVFLGNGISELSRKEIFNGLPELKGMGIRMTEPVYL 204
Query: 232 LPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVA 291
PSF +VL +FLQNLPS + H L+PQ GE+ILD+CAAPGGKTT IA+L+ D+GEV+A
Sbjct: 205 SPSFDNVLPRYLFLQNLPSALVTHVLNPQPGEKILDLCAAPGGKTTHIAALMHDQGEVIA 264
Query: 292 VDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVR 326
+D+ +KV I++ A +GL I + D KAV+
Sbjct: 265 MDKIFSKVEKIKQNALLLGLNSIRAFCFDGTKAVK 299
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 416 ENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPG 475
E F P SFDR+LLDAPCS +G RP + A +++ L ++ QR++F AVQL++PG
Sbjct: 307 EGEPPFLPESFDRILLDAPCSGMGQRPNM-ACTWSLKELASYQPLQRKLFTAAVQLLKPG 365
>gi|380789539|gb|AFE66645.1| putative methyltransferase NSUN6 [Macaca mulatta]
Length = 469
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 108/335 (32%), Positives = 167/335 (49%), Gaps = 53/335 (15%)
Query: 8 SYSPLLRWNPQVEEYF---------IRAYGADH----FSRISKALTRPSCYSCIRVNTLK 54
S P + P+VE Y + A G F + K L+ P ++ +RVNT
Sbjct: 2 SIFPKISLRPEVENYLKEGFVNKEIVTALGKQEAERKFETLLKHLSHPPSFTTVRVNTHL 61
Query: 55 TTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTID 114
T+ V LL +Q + ++ Q P L+ V+ + GP
Sbjct: 62 TSVQHVKNLLLDELQK--------------QFNGLSVPILQHPDLQDVLLIPVIGPRK-- 105
Query: 115 YGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGG 174
K E IV +C AVLRGA VY PG+++ S ++ GDV++V +
Sbjct: 106 ---NIKKQQCEAIVGAQCGNAVLRGAHVYAPGIVSASKFMKAGDVISVYSDI-------- 154
Query: 175 WGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRAS---EGIAVDMHNRIFQ 231
+G +G++ F+ + +++G G + +SR IF +G+ + M ++
Sbjct: 155 ------KGKCKKGARE----FDGTKVFLGNGISELSRKEIFNGLPELKGMGIRMTEPVYL 204
Query: 232 LPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVA 291
PSF +VL +FLQNLPS + H L+PQ GE+ILD+CAAPGGKTT IA+L+ D+GEV+A
Sbjct: 205 SPSFDNVLPRYLFLQNLPSALVTHVLNPQPGEKILDLCAAPGGKTTHIAALMHDQGEVIA 264
Query: 292 VDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVR 326
+D+ +KV I++ A +GL I + D KAV+
Sbjct: 265 MDKIFSKVEKIKQNALLLGLNSIRAFCFDGTKAVK 299
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
Query: 416 ENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPG 475
E F P SFDR+LLDAPCS +G RP + A +++ L ++ QR++F AVQL++P
Sbjct: 307 EGEPPFLPESFDRILLDAPCSGMGQRPNM-ACTWSLKELASYQPLQRKLFTAAVQLLKPE 365
Query: 476 GIIVYSTCTINPGENE 491
G++VYSTCTI ENE
Sbjct: 366 GVLVYSTCTITLAENE 381
>gi|32698918|ref|NP_872349.1| putative methyltransferase NSUN6 [Homo sapiens]
gi|74751440|sp|Q8TEA1.1|NSUN6_HUMAN RecName: Full=Putative methyltransferase NSUN6; AltName:
Full=NOL1/NOP2/Sun and PUA domain-containing protein 1;
AltName: Full=NOL1/NOP2/Sun domain family member 6
gi|18676896|dbj|BAB85051.1| unnamed protein product [Homo sapiens]
gi|23272784|gb|AAH35778.1| NOL1/NOP2/Sun domain family, member 6 [Homo sapiens]
gi|119606597|gb|EAW86191.1| NOL1/NOP2/Sun domain family, member 6, isoform CRA_a [Homo sapiens]
gi|167887637|gb|ACA06032.1| NOL1/NOP2/Sun domain family, member 6 variant 1 [Homo sapiens]
gi|167887638|gb|ACA06033.1| NOL1/NOP2/Sun domain family, member 6 variant 2 [Homo sapiens]
gi|312150490|gb|ADQ31757.1| NOL1/NOP2/Sun domain family, member 6 [synthetic construct]
Length = 469
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 108/335 (32%), Positives = 166/335 (49%), Gaps = 53/335 (15%)
Query: 8 SYSPLLRWNPQVEEYF---------IRAYGADH----FSRISKALTRPSCYSCIRVNTLK 54
S P + P+VE Y + A G F + K L+ P ++ +RVNT
Sbjct: 2 SIFPKISLRPEVENYLKEGFMNKEIVTALGKQEAERKFETLLKHLSHPPSFTTVRVNTHL 61
Query: 55 TTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTID 114
+ V LL +Q + ++ Q P L+ V+ + GP
Sbjct: 62 ASVQHVKNLLLDELQK--------------QFNGLSVPILQHPDLQDVLLIPVIGPRK-- 105
Query: 115 YGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGG 174
K E IV +C AVLRGA VY PG+++ S ++ GDV++V +
Sbjct: 106 ---NIKKQQCEAIVGAQCGNAVLRGAHVYAPGIVSASQFMKAGDVISVYSDI-------- 154
Query: 175 WGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRAS---EGIAVDMHNRIFQ 231
+G +G++ F+ + +++G G + +SR IF +G+ + M ++
Sbjct: 155 ------KGKCKKGAKE----FDGTKVFLGNGISELSRKEIFSGLPELKGMGIRMTEPVYL 204
Query: 232 LPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVA 291
PSF VL +FLQNLPS + +H L+PQ GE+ILD+CAAPGGKTT IA+L+ D+GEV+A
Sbjct: 205 SPSFDSVLPRYLFLQNLPSALVSHVLNPQPGEKILDLCAAPGGKTTHIAALMHDQGEVIA 264
Query: 292 VDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVR 326
+D+ NKV I++ A +GL I + D KAV+
Sbjct: 265 LDKIFNKVEKIKQNALLLGLNSIRAFCFDGTKAVK 299
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
Query: 416 ENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPG 475
E F P SFDR+LLDAPCS +G RP + A +++ + ++ QR++F AVQL++P
Sbjct: 307 EGEPPFLPESFDRILLDAPCSGMGQRPNM-ACTWSVKEVASYQPLQRKLFTAAVQLLKPE 365
Query: 476 GIIVYSTCTINPGENE 491
G++VYSTCTI ENE
Sbjct: 366 GVLVYSTCTITLAENE 381
>gi|444706028|gb|ELW47391.1| Putative methyltransferase NSUN6 [Tupaia chinensis]
Length = 476
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 106/335 (31%), Positives = 164/335 (48%), Gaps = 53/335 (15%)
Query: 8 SYSPLLRWNPQVEEYFIRAY-------------GADHFSRISKALTRPSCYSCIRVNTLK 54
S P + P+VE Y + + + L+ P ++ +RVNT
Sbjct: 2 STFPKISLRPEVENYLKEGFMNKEILSVLGKQEAERKYETLLNHLSHPPSFTTVRVNTHL 61
Query: 55 TTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTID 114
+ V LL +Q + +I Q P L+ ++ + GP
Sbjct: 62 ASVQQVKSLLLDELQK--------------QFNGISIPILQHPDLQDILLIPVIGPRK-- 105
Query: 115 YGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGG 174
K E IV +C AVLRGA VY+PG+++ S ++ GDV++V +
Sbjct: 106 ---NIQKQQHEAIVGAQCGNAVLRGAHVYIPGIVSASKFMKAGDVISVYSDI-------- 154
Query: 175 WGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRAS---EGIAVDMHNRIFQ 231
G +G++ F+ + +++G G + +SR IF +GI + M ++
Sbjct: 155 ------NGRCKKGAKE----FDGTKVFLGNGISEVSRKEIFSGLPELKGIGIRMTEPVYL 204
Query: 232 LPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVA 291
PSF +VL G +FLQNLPS V H L+PQ GE+ILD+CAAPGGKTT IA+L+ D+GEV+A
Sbjct: 205 SPSFDNVLPGYLFLQNLPSAVVTHVLNPQPGEKILDLCAAPGGKTTHIAALMHDQGEVIA 264
Query: 292 VDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVR 326
+D+ NKV I+K A+ + L I + D KA++
Sbjct: 265 LDKIPNKVEKIKKNASLLKLHSIRAFCFDGTKALK 299
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 66/111 (59%), Gaps = 11/111 (9%)
Query: 395 RKNMRRMRNGPGRNQCLGG-------RAENSKG---FSPNSFDRVLLDAPCSALGLRPRL 444
+KN ++ R C G E++KG F P SFDR+LLDAPCS +G RP +
Sbjct: 276 KKNASLLKLHSIRAFCFDGTKALKLDMVEDTKGKPPFLPESFDRILLDAPCSGMGQRPNM 335
Query: 445 FAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEALCA 495
A T++ + ++ QR++F AVQL++PGGI+VYSTCT+ ENE A
Sbjct: 336 -ACGWTLKEVTSYQPLQRKLFTVAVQLLKPGGILVYSTCTVTLAENEEQVA 385
>gi|426364103|ref|XP_004049161.1| PREDICTED: putative methyltransferase NSUN6 [Gorilla gorilla
gorilla]
Length = 469
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 107/335 (31%), Positives = 166/335 (49%), Gaps = 53/335 (15%)
Query: 8 SYSPLLRWNPQVEEYF---------IRAYGADH----FSRISKALTRPSCYSCIRVNTLK 54
S P + P+VE Y + A G F + K L+ P ++ +RVNT
Sbjct: 2 SIFPKISLRPEVENYLKEGFMNKEIVTALGKQEAERKFETLLKHLSHPPSFTTVRVNTHL 61
Query: 55 TTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTID 114
+ V LL +Q + ++ Q P L+ V+ + GP
Sbjct: 62 ASVQHVKNLLLDELQK--------------QFNGLSVPILQHPDLQDVLLIPVIGPRK-- 105
Query: 115 YGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGG 174
+ E IV +C AVLRGA VY PG+++ S ++ GDV++V +
Sbjct: 106 ---NIKRQQCEAIVGAQCGNAVLRGAHVYAPGIVSASKFMKAGDVISVYSDI-------- 154
Query: 175 WGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRAS---EGIAVDMHNRIFQ 231
+G +G++ F+ + +++G G + +SR IF +G+ + M ++
Sbjct: 155 ------KGKCKKGAKE----FDGTKVFLGNGISELSRKEIFSGLPELKGMGIRMTEPVYL 204
Query: 232 LPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVA 291
PSF VL +FLQNLPS + +H L+PQ GE+ILD+CAAPGGKTT IA+L+ D+GEV+A
Sbjct: 205 SPSFDSVLPRYLFLQNLPSALVSHVLNPQPGEKILDLCAAPGGKTTHIAALMHDQGEVIA 264
Query: 292 VDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVR 326
+D+ NKV I++ A +GL I + D KAV+
Sbjct: 265 LDKIFNKVEKIKQNALLLGLNSIRAFCFDGTKAVK 299
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
Query: 416 ENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPG 475
E F P SFDR+LLDAPCS +G RP + A +++ + ++ QR++F AVQL++P
Sbjct: 307 EGEPPFLPESFDRILLDAPCSGMGQRPNM-ACTWSLKEVASYQPLQRKLFTAAVQLLKPE 365
Query: 476 GIIVYSTCTINPGENE 491
G++VYSTCTI ENE
Sbjct: 366 GVLVYSTCTITLAENE 381
>gi|260099664|ref|NP_001159415.1| putative methyltransferase NSUN6 isoform c [Mus musculus]
Length = 425
Score = 161 bits (407), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 94/240 (39%), Positives = 139/240 (57%), Gaps = 26/240 (10%)
Query: 90 TISESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMA 149
+I Q P L V+ + +GP ++ EVIV +C AVLRGA VYVPG+++
Sbjct: 32 SIPVVQHPALPDVLLIPMTGPRK-----NIERQQGEVIVGAQCGNAVLRGAHVYVPGIVS 86
Query: 150 CSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMM 209
S ++ GDV++V + G +G++ F+ + +++G G + +
Sbjct: 87 ASKFMKAGDVISVYSDI--------------NGKCKKGAKE----FDGTKVFLGNGISEL 128
Query: 210 SRAGIFRAS---EGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERIL 266
SR IF +GI + M I+ PSF +VL IFLQNLPS V AH LDPQ GE+IL
Sbjct: 129 SRKDIFNGLPDLKGIGIRMTEPIYLSPSFDNVLPSYIFLQNLPSTVVAHVLDPQPGEKIL 188
Query: 267 DMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVR 326
DMCAAPGGKTT A+L++D+GEV+A+D+ KV +++ A+ +GL I + DA KA++
Sbjct: 189 DMCAAPGGKTTHTAALMQDKGEVIALDKILTKVNKLKQNASLLGLHSIRAFCFDATKALK 248
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
Query: 416 ENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPG 475
E F P SFDR++LDAPCS +G RP + A T++ + ++ QR++ AVQL++PG
Sbjct: 256 EGGPPFLPESFDRIILDAPCSGMGQRPNM-ACTWTLKEVTSYQPLQRKLLHVAVQLLKPG 314
Query: 476 GIIVYSTCTINPGENE 491
G++VYSTCTI ENE
Sbjct: 315 GVLVYSTCTITLAENE 330
>gi|301783221|ref|XP_002927025.1| PREDICTED: putative methyltransferase NSUN6-like [Ailuropoda
melanoleuca]
Length = 469
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 103/314 (32%), Positives = 159/314 (50%), Gaps = 40/314 (12%)
Query: 16 NPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSE 75
N ++ F + F + L+ P ++ +RVNT + V L +Q S
Sbjct: 23 NKEIVSAFGKQAAERKFEILLNHLSHPPSFTTVRVNTHLASVQHVKDLLFDELQKQFSGL 82
Query: 76 ADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEA 135
+ Q P L+ V+ + GP K E IV +C A
Sbjct: 83 --------------NVPILQHPDLQDVLLIPVIGPRK-----NIKKQRCEAIVGAQCGNA 123
Query: 136 VLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYF 195
VLRGA VYVPG+++ S ++ GD+++V + +G +G++ F
Sbjct: 124 VLRGAHVYVPGIVSASKFMKAGDLISVYSDI--------------KGKCKKGAKE----F 165
Query: 196 ERSGLYIGQGTAMMSRAGIFRAS---EGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIV 252
+ + +++G G + +SR IF +GI + M ++ PSF +VL +FLQNLPS V
Sbjct: 166 DGTKVFLGNGISELSRKEIFSGLPELKGIGIRMIEPVYLSPSFDNVLPSYLFLQNLPSAV 225
Query: 253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK 312
H L+PQ GE+ILD+CAAPGGKTT IA+L+RD+GEV+A+D+ NKV I++ A +GL
Sbjct: 226 VTHVLNPQPGEKILDLCAAPGGKTTHIAALMRDQGEVIALDKIPNKVEKIKQNALLLGLN 285
Query: 313 CITTYKLDALKAVR 326
I + D KA++
Sbjct: 286 SIKAFCFDGTKALQ 299
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 54/77 (70%), Gaps = 1/77 (1%)
Query: 415 AENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRP 474
AE F P SFDRVLLDAPCS +G RP + A T++ + ++ QR++F AV+L+RP
Sbjct: 306 AEGKPPFLPESFDRVLLDAPCSGMGQRPNM-ACSWTLKEVTSYQPLQRKLFTVAVELLRP 364
Query: 475 GGIIVYSTCTINPGENE 491
GG++VYSTCTI ENE
Sbjct: 365 GGVLVYSTCTITLAENE 381
>gi|355708097|gb|AES03162.1| NOL1/NOP2/Sun domain family, member 6 [Mustela putorius furo]
Length = 437
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 105/326 (32%), Positives = 162/326 (49%), Gaps = 43/326 (13%)
Query: 32 FSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTI 91
F + L+ P ++ +RVN + V L +Q + +
Sbjct: 7 FETLLNRLSHPPSFTTVRVNIHLASVQHVKDLLFDELQK--------------QFNGLNV 52
Query: 92 SESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACS 151
Q P L+ V+ + GP K E IV +C AVLRGA VYVPG+++ S
Sbjct: 53 PILQHPDLQDVLLIPVIGPRK-----NIKKQHCEAIVGAQCGNAVLRGAHVYVPGIVSAS 107
Query: 152 SHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSR 211
++ GDV+++ + +G +G++ F+ + +++G G + +SR
Sbjct: 108 KFMKAGDVISIYSDI--------------KGKCKKGAKE----FDGTKVFLGNGISELSR 149
Query: 212 AGIFRAS---EGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDM 268
IF +GI + M I+ PSF +VL +FLQNLPS V AH LDPQ GE+ILD+
Sbjct: 150 KEIFSGVPELKGIGIRMTEPIYLSPSFDNVLPSYLFLQNLPSAVVAHVLDPQPGEKILDL 209
Query: 269 CAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRR- 327
CAAPGGKTT IA+L+ D+GEV+A+D+ KV I++ A +GL I + D KA++
Sbjct: 210 CAAPGGKTTHIAALMHDQGEVIALDKISKKVEKIKQNALLLGLNSIKAFCFDGTKALKLD 269
Query: 328 --KNESNDEPNMCNSKDNNYITSQTS 351
K+ P + +S D + + S
Sbjct: 270 MVKDAEGKPPFLPDSFDRILLDAPCS 295
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 56/77 (72%), Gaps = 1/77 (1%)
Query: 415 AENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRP 474
AE F P+SFDR+LLDAPCS +G RP + A T++ + ++ QR++F AV+L++P
Sbjct: 274 AEGKPPFLPDSFDRILLDAPCSGMGQRPNM-ACSWTLKEVTSYPPLQRKLFTVAVELLKP 332
Query: 475 GGIIVYSTCTINPGENE 491
GG++VYSTCTI+ ENE
Sbjct: 333 GGVLVYSTCTISLAENE 349
>gi|327274719|ref|XP_003222124.1| PREDICTED: putative methyltransferase NSUN6-like [Anolis
carolinensis]
Length = 430
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 99/290 (34%), Positives = 155/290 (53%), Gaps = 40/290 (13%)
Query: 39 LTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTISESQIPG 98
L+ P ++ +RVNT + + + L I +S ++ Q P
Sbjct: 28 LSHPPAFTTVRVNTYLASVEHIRGLLCEEIHKQYASL--------------SVPVLQHPQ 73
Query: 99 LEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGD 158
L ++ + GP + K E IV +C AVLRGA VY PG+++ S + GD
Sbjct: 74 LPDILLIPVIGPRK-----DLQKLANEAIVGAQCGSAVLRGAHVYAPGIVSASKFMRAGD 128
Query: 159 VVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRAS 218
+V+V +E G +G++ F + ++IG G + +SR+ IF ++
Sbjct: 129 LVSVYSDIE--------------GKCKRGAKE----FLGTKVFIGNGISELSRSEIFNSN 170
Query: 219 ---EGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGK 275
+G+ + M I+ PSF ++L +FLQNLPS V ++ L+PQ GERILDMCAAPGGK
Sbjct: 171 GPLKGLGIKMIEPIYLSPSFDNLLPSYLFLQNLPSAVVSYVLNPQPGERILDMCAAPGGK 230
Query: 276 TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAV 325
TT +A+L+ DEGEV+A+D+ +KV I++ A+ + L CI T+ D KA+
Sbjct: 231 TTHLATLMHDEGEVIALDKIADKVKKIKQNASSLKLNCIKTFCYDGTKAL 280
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 36/54 (66%), Gaps = 3/54 (5%)
Query: 414 RAENSKG--FSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMF 465
RA+ +G F P SFDR+LLDAPCS +G RP + A +++ + ++ QRR+F
Sbjct: 285 RADGQEGPPFVPESFDRILLDAPCSGMGQRPNM-AFSWSLKEVTSYQPLQRRLF 337
>gi|395827251|ref|XP_003786818.1| PREDICTED: putative methyltransferase NSUN6 isoform 2 [Otolemur
garnettii]
Length = 381
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 107/335 (31%), Positives = 165/335 (49%), Gaps = 53/335 (15%)
Query: 8 SYSPLLRWNPQVEEYF---------IRAYGADH----FSRISKALTRPSCYSCIRVNTLK 54
S P + P+VE Y I A G F + L+ P ++ +RVNT
Sbjct: 2 SVFPKISLRPEVENYLKEGFVNKEVISALGKQEAEKKFETLLYHLSHPPSFTTVRVNTNL 61
Query: 55 TTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTID 114
T+ V LL +K + T+ Q P L ++ + GP
Sbjct: 62 TSVQHVKNLLL--------------DELKKQFNGLTVPILQHPDLRDILLIPVIGPRKNI 107
Query: 115 YGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGG 174
+ E +V +C AVLRGA VYVPG+++ S ++ GDV++V +
Sbjct: 108 QNQQ-----CEAVVGAQCGNAVLRGAHVYVPGIVSASKFMKSGDVISVYSDI-------- 154
Query: 175 WGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRAS---EGIAVDMHNRIFQ 231
+G +G++ F+ + +++G G + +SR +F GI + M ++
Sbjct: 155 ------KGECKKGAKE----FDGTKVFLGNGISEVSRKELFSGLPQLRGIGIRMTEPVYL 204
Query: 232 LPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVA 291
PSF +VL +FLQNLPS + +H L+PQ GE ILD+CAAPGGKTT IA+L++D+G V+A
Sbjct: 205 SPSFDNVLPSYLFLQNLPSALVSHVLNPQPGEMILDLCAAPGGKTTHIAALMQDQGVVIA 264
Query: 292 VDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVR 326
+D+ NKV I++ A +GL I + D KAV+
Sbjct: 265 LDKIFNKVEKIKQNALLLGLNSIRAFCFDGTKAVK 299
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 45/64 (70%), Gaps = 4/64 (6%)
Query: 416 ENSKG---FSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLV 472
E++KG F P +FDR+LLDAPCS +G RP + A T++ + ++ QRR+F AVQL+
Sbjct: 304 EDTKGGPPFLPETFDRILLDAPCSGMGQRPNM-ACTWTLKEVTSYQPLQRRLFTVAVQLL 362
Query: 473 RPGG 476
+PGG
Sbjct: 363 KPGG 366
>gi|395827249|ref|XP_003786817.1| PREDICTED: putative methyltransferase NSUN6 isoform 1 [Otolemur
garnettii]
Length = 469
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 107/335 (31%), Positives = 165/335 (49%), Gaps = 53/335 (15%)
Query: 8 SYSPLLRWNPQVEEYF---------IRAYGADH----FSRISKALTRPSCYSCIRVNTLK 54
S P + P+VE Y I A G F + L+ P ++ +RVNT
Sbjct: 2 SVFPKISLRPEVENYLKEGFVNKEVISALGKQEAEKKFETLLYHLSHPPSFTTVRVNTNL 61
Query: 55 TTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTID 114
T+ V LL +K + T+ Q P L ++ + GP
Sbjct: 62 TSVQHVKNLLL--------------DELKKQFNGLTVPILQHPDLRDILLIPVIGPRKNI 107
Query: 115 YGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGG 174
+ E +V +C AVLRGA VYVPG+++ S ++ GDV++V +
Sbjct: 108 QNQQ-----CEAVVGAQCGNAVLRGAHVYVPGIVSASKFMKSGDVISVYSDI-------- 154
Query: 175 WGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRAS---EGIAVDMHNRIFQ 231
+G +G++ F+ + +++G G + +SR +F GI + M ++
Sbjct: 155 ------KGECKKGAKE----FDGTKVFLGNGISEVSRKELFSGLPQLRGIGIRMTEPVYL 204
Query: 232 LPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVA 291
PSF +VL +FLQNLPS + +H L+PQ GE ILD+CAAPGGKTT IA+L++D+G V+A
Sbjct: 205 SPSFDNVLPSYLFLQNLPSALVSHVLNPQPGEMILDLCAAPGGKTTHIAALMQDQGVVIA 264
Query: 292 VDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVR 326
+D+ NKV I++ A +GL I + D KAV+
Sbjct: 265 LDKIFNKVEKIKQNALLLGLNSIRAFCFDGTKAVK 299
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 57/79 (72%), Gaps = 4/79 (5%)
Query: 416 ENSKG---FSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLV 472
E++KG F P +FDR+LLDAPCS +G RP + A T++ + ++ QRR+F AVQL+
Sbjct: 304 EDTKGGPPFLPETFDRILLDAPCSGMGQRPNM-ACTWTLKEVTSYQPLQRRLFTVAVQLL 362
Query: 473 RPGGIIVYSTCTINPGENE 491
+PGG++VYSTCT+ ENE
Sbjct: 363 KPGGVLVYSTCTVTLAENE 381
>gi|348503686|ref|XP_003439395.1| PREDICTED: LOW QUALITY PROTEIN: putative methyltransferase
NSUN6-like [Oreochromis niloticus]
Length = 474
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 108/336 (32%), Positives = 176/336 (52%), Gaps = 40/336 (11%)
Query: 8 SYSPLLRWNPQVEEYF---------IRAYG---ADH-FSRISKALTRPSCYSCIRVNTLK 54
S P + P+V EY + A G A+H F ++ L+ P Y+C+R +T
Sbjct: 2 SIFPRISLKPEVTEYLKSVFLNKEVLTAVGHQEAEHRFHKLLSCLSHPPSYTCVRASTHL 61
Query: 55 TTTDDVIQKLLAII--QNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHT 112
+++ Q+L + Q SS +V+ + L + I++ I +E + + + ++
Sbjct: 62 APLEEIRQRLAEELRKQMCSSSAEEVSVQI---LPHPRIADVLILPVEGPRYARNASDNS 118
Query: 113 IDYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLD 172
+ EV+V +C AVLRGA V+ PG++ +++ GD+V+V +E
Sbjct: 119 XS-ALPVKQLSSEVVVGAQCGSAVLRGAHVFAPGILGSPKYMKAGDLVSVFSDLE----- 172
Query: 173 GGWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASE---GIAVDMHNRI 229
G +G+ + F+ +++G G A M R+ IF E GI + M +
Sbjct: 173 ---------GRCTRGATS----FQGKKVFVGNGVAEMDRSTIFCTDEPARGIGIRMVEPL 219
Query: 230 FQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEV 289
++ PSF VL +FLQNLPS+V H L P+ GERILDMCAAPGGKT IA+L+ D+GEV
Sbjct: 220 YRSPSFDGVLPSLVFLQNLPSVVVGHVLGPRPGERILDMCAAPGGKTCHIAALMGDQGEV 279
Query: 290 VAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAV 325
VA+DR NK+ I++ A + L+ + + ++ +AV
Sbjct: 280 VALDRIRNKIDRIRQNAQMLHLQSVQAHCFNSTQAV 315
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 56/79 (70%), Gaps = 3/79 (3%)
Query: 415 AENSKG--FSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLV 472
A+ ++G F P SFDRVLLDAPCS LG RP + + +++ + ++ QR++F AV+L+
Sbjct: 320 AQETEGPPFPPESFDRVLLDAPCSGLGQRPNM-GSTWSLKEICSYQPLQRKLFHAAVRLL 378
Query: 473 RPGGIIVYSTCTINPGENE 491
+ GG++VYSTCT+ ENE
Sbjct: 379 KKGGVLVYSTCTVTLAENE 397
>gi|359318915|ref|XP_003638939.1| PREDICTED: putative methyltransferase NSUN6-like [Canis lupus
familiaris]
Length = 469
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 103/314 (32%), Positives = 158/314 (50%), Gaps = 40/314 (12%)
Query: 16 NPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSE 75
N +V F + F + L+ P ++ +RVNT + V L +Q
Sbjct: 23 NKEVISAFGKQEAERKFEALLNHLSHPPSFTTVRVNTHLASVQQVKDLLFHELQK----- 77
Query: 76 ADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEA 135
+ ++ Q P L+ V+ + GP + E IV +C A
Sbjct: 78 ---------QFNGLSVPILQHPDLQDVLLIPVIGPRK-----NIKRQRCEAIVGAQCGNA 123
Query: 136 VLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYF 195
VLRGA VYVPG+++ S ++ GDV +V + +G +G++ F
Sbjct: 124 VLRGAHVYVPGIVSTSKFMKAGDVTSVYSDI--------------KGKCKKGAKE----F 165
Query: 196 ERSGLYIGQGTAMMSRAGIFRAS---EGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIV 252
+ + +++G G + +SR IF +G + M ++ PSF +VL +FLQNLPS V
Sbjct: 166 DGTKVFLGNGISELSRKEIFSGVPELKGRGIRMTEPVYLSPSFDNVLPRYLFLQNLPSAV 225
Query: 253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK 312
H LDPQ GE+ILD+CAAPGGKTT IA+L+RD+GEV+A+D+ NKV I++ A +GL
Sbjct: 226 VTHVLDPQPGEKILDLCAAPGGKTTHIAALMRDQGEVIALDKISNKVEKIKQNALLLGLN 285
Query: 313 CITTYKLDALKAVR 326
I + D KA++
Sbjct: 286 SIKAFCFDGTKALK 299
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 56/78 (71%), Gaps = 1/78 (1%)
Query: 414 RAENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVR 473
+AE + F P SFDR+LLDAPCS +G RP + A T++ + ++ QR++F AVQL++
Sbjct: 305 KAEGNPPFLPESFDRILLDAPCSGMGQRPNM-ACSWTLKEVTSYQPLQRKLFTVAVQLLK 363
Query: 474 PGGIIVYSTCTINPGENE 491
PGG++VYSTCTI ENE
Sbjct: 364 PGGVLVYSTCTITLAENE 381
>gi|346467711|gb|AEO33700.1| hypothetical protein [Amblyomma maculatum]
Length = 427
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 110/311 (35%), Positives = 158/311 (50%), Gaps = 38/311 (12%)
Query: 28 GADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQ 87
G S + L+ P Y+ +RVNT T+ +D K+L + ++ S D+A V
Sbjct: 46 GKSRLSHLKSWLSLPPQYTTVRVNTRDTSVEDA--KIL-LQRSMTESHGDLAPEV----- 97
Query: 88 NGTISESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGV 147
I IP L + + S +P +EV+V R CAEAVLRGA VY+PG+
Sbjct: 98 ---ICHPSIPDLLILSGRQSSA------NLQPTL--REVVVRRDCAEAVLRGAHVYIPGI 146
Query: 148 MACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTA 207
M ++ G VAV G G L+G +T PY R +++G G A
Sbjct: 147 MGAPKGLQAGQQVAV--------------YGDLDGQCLKG-RTRPYRGRR--VFVGNGIA 189
Query: 208 MMSRAGIF--RASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERI 265
++SRA IF + SEG AV M + P + +FLQNLPS + H LDP+ G+ +
Sbjct: 190 VVSRADIFVKQVSEGCAVRMTEPVSGCPPLGGLEPSRLFLQNLPSALCGHILDPKPGDAV 249
Query: 266 LDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAV 325
LDMCAAPGGKTT +A+L+ D G VVA+DRS N+V ++ + C+ ++ DA +
Sbjct: 250 LDMCAAPGGKTTHLATLMNDTGLVVALDRSENRVARVRNNCERWKISCVRSFAHDANEFD 309
Query: 326 RRKNESNDEPN 336
+ D PN
Sbjct: 310 SLPQQGIDLPN 320
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 58/73 (79%), Gaps = 1/73 (1%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYST 482
PN FDR+LLDAPCSALG RPRL + E++ +++ ++ Q+ + + AV+L++PGG+++YST
Sbjct: 319 PNCFDRILLDAPCSALGGRPRL-SYEQSAKAVDSYPPQQKALLETAVRLLKPGGLLLYST 377
Query: 483 CTINPGENEALCA 495
C+++ ENEA+ A
Sbjct: 378 CSLSTAENEAVVA 390
>gi|426240849|ref|XP_004014306.1| PREDICTED: putative methyltransferase NSUN6 [Ovis aries]
Length = 408
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 104/317 (32%), Positives = 161/317 (50%), Gaps = 43/317 (13%)
Query: 32 FSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTI 91
F + L+ P ++ +RVNT + V L +Q + +
Sbjct: 39 FETLLHNLSHPPSFTTVRVNTHLASVQHVKNLLFDELQK--------------QFNGLSF 84
Query: 92 SESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACS 151
Q P L+ V+ + GP + P EVIV +C AVLRGA VYVPG+++ S
Sbjct: 85 PILQHPDLQDVLLIPVIGPRK-----NIKQQPCEVIVGAQCGNAVLRGAHVYVPGIVSAS 139
Query: 152 SHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSR 211
++ GD V+V + +G +G++ F+ + +++G G + +SR
Sbjct: 140 KFMKGGDHVSVYSDI--------------KGKCKKGAKE----FDGTKIFLGNGISELSR 181
Query: 212 AGIFRAS---EGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDM 268
IF +G+ V M ++ PSF +VL +FLQNLPS V +H LDPQ GE++LD+
Sbjct: 182 KEIFSGLPELKGVGVRMTEPVYLSPSFDNVLPNYLFLQNLPSAVVSHVLDPQPGEKVLDL 241
Query: 269 CAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRR- 327
CAAPGGKTT IA+L+ D+GEV+A+D+ KV I++ A +GL I + D KA++
Sbjct: 242 CAAPGGKTTHIAALMCDQGEVIALDKISKKVEKIKQNALLLGLNSIRAFCFDGTKALKLD 301
Query: 328 --KNESNDEPNMCNSKD 342
K+ + P + S D
Sbjct: 302 MVKDTDGEPPFLPESFD 318
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 52/71 (73%), Gaps = 1/71 (1%)
Query: 421 FSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
F P SFDR+LLDAPCS +G RP + A T++ + ++ QR++F AV+L++PGG++VY
Sbjct: 312 FLPESFDRILLDAPCSGMGQRPNM-ACTWTLKEVMSYQPLQRKLFTAAVELLKPGGVLVY 370
Query: 481 STCTINPGENE 491
STCT+ ENE
Sbjct: 371 STCTVTLAENE 381
>gi|397480441|ref|XP_003811492.1| PREDICTED: putative methyltransferase NSUN6 [Pan paniscus]
Length = 469
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 106/335 (31%), Positives = 161/335 (48%), Gaps = 53/335 (15%)
Query: 8 SYSPLLRWNPQVEEYF---------IRAYGADH----FSRISKALTRPSCYSCIRVNTLK 54
S P + P+VE Y + A G F + K L+ P ++ +RVNT
Sbjct: 2 SIFPKISLRPEVENYLKEGFMNKEIVTALGKPEAERKFETLLKHLSHPPSFTTVRVNTHL 61
Query: 55 TTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTID 114
+ V LL +Q + ++ Q P L+ V+ + GP
Sbjct: 62 ASVQHVKNLLLDELQK--------------QFNGLSVPILQHPDLQDVLLIPVIGPRK-- 105
Query: 115 YGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGG 174
K E IV +C AVLRGA VY PG+++ S ++ GDV++V
Sbjct: 106 ---NIKKQQCEAIVGAQCGNAVLRGAHVYAPGIVSASKFMKAGDVISV------------ 150
Query: 175 WGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRAS---EGIAVDMHNRIFQ 231
+ + F+ + +++G G + +SR IF +G+ + M ++
Sbjct: 151 ------YSDIKGKCKKGAKKFDGTKVFLGNGISELSRKEIFSGLPELKGMGIRMTEPVYL 204
Query: 232 LPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVA 291
PSF VL +FLQNLPS + +H L+PQ GE+ILD+CAAPGGKTT IA+L+ D+GEV+A
Sbjct: 205 SPSFDSVLPRYLFLQNLPSALVSHVLNPQPGEKILDLCAAPGGKTTHIAALMHDQGEVIA 264
Query: 292 VDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVR 326
+D+ NKV I++ A +GL I + D KAV+
Sbjct: 265 LDKIFNKVEKIKQNALLLGLNSIRAFCFDGTKAVK 299
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Query: 416 ENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPG 475
E F P SFDR+LLDAPCS +G RP + A+ +++ + ++ QR++F AVQL++P
Sbjct: 307 EGEPPFLPESFDRILLDAPCSGMGQRPNM-ASTWSLKEVASYQPLQRKLFTAAVQLLKPE 365
Query: 476 GIIVYSTCTINPGENE 491
G++VYSTCTI ENE
Sbjct: 366 GVLVYSTCTITLAENE 381
>gi|114629648|ref|XP_507683.2| PREDICTED: putative methyltransferase NSUN6 isoform 3 [Pan
troglodytes]
gi|410209552|gb|JAA01995.1| NOP2/Sun domain family, member 6 [Pan troglodytes]
gi|410259322|gb|JAA17627.1| NOP2/Sun domain family, member 6 [Pan troglodytes]
Length = 469
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 106/335 (31%), Positives = 161/335 (48%), Gaps = 53/335 (15%)
Query: 8 SYSPLLRWNPQVEEYF---------IRAYGADH----FSRISKALTRPSCYSCIRVNTLK 54
S P + P+VE Y + A G F + K L+ P ++ +RVNT
Sbjct: 2 SIFPKISLRPEVENYLKEGFMNKEIVTALGKPEAERKFETLLKHLSHPPSFTTVRVNTHL 61
Query: 55 TTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTID 114
+ V LL +Q + ++ Q P L+ V+ + GP
Sbjct: 62 ASVQHVKNLLLDELQK--------------QFNGLSVPILQHPDLQDVLLIPVIGPRK-- 105
Query: 115 YGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGG 174
K E IV +C AVLRGA VY PG+++ S ++ GDV++V
Sbjct: 106 ---NIKKQQCEAIVGAQCGNAVLRGAHVYAPGIVSASKFMKTGDVISV------------ 150
Query: 175 WGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRAS---EGIAVDMHNRIFQ 231
+ + F+ + +++G G + +SR IF +G+ + M ++
Sbjct: 151 ------YSDIKGKCKKGAKKFDGTKVFLGNGISELSRKEIFSGLPELKGMGIRMTEPVYL 204
Query: 232 LPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVA 291
PSF VL +FLQNLPS + +H L+PQ GE+ILD+CAAPGGKTT IA+L+ D+GEV+A
Sbjct: 205 SPSFDSVLPRYLFLQNLPSALVSHVLNPQPGEKILDLCAAPGGKTTHIAALMHDQGEVIA 264
Query: 292 VDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVR 326
+D+ NKV I++ A +GL I + D KAV+
Sbjct: 265 LDKIFNKVEKIKQNALLLGLNSIRAFCFDGTKAVK 299
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Query: 416 ENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPG 475
E F P SFDR+LLDAPCS +G RP + A+ +++ + ++ QR++F AVQL++P
Sbjct: 307 EGEPPFLPESFDRILLDAPCSGMGQRPNM-ASTWSLKEVASYQPLQRKLFTAAVQLLKPE 365
Query: 476 GIIVYSTCTINPGENE 491
G++VYSTCTI ENE
Sbjct: 366 GVLVYSTCTITLAENE 381
>gi|440909187|gb|ELR59124.1| Putative methyltransferase NSUN6, partial [Bos grunniens mutus]
Length = 470
Score = 158 bits (399), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 105/326 (32%), Positives = 163/326 (50%), Gaps = 43/326 (13%)
Query: 32 FSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTI 91
F + L+ P ++ +RVNT + V L +Q + +
Sbjct: 39 FETLLHNLSHPPSFTTVRVNTHLASVQHVKNLLFDELQK--------------QFNGLSF 84
Query: 92 SESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACS 151
Q P L+ V+ + GP + EVIV +C AVLRGA VYVPG+++ S
Sbjct: 85 PVLQHPDLQDVLLIPVIGPRK-----NIKQQTCEVIVGAQCGSAVLRGAHVYVPGIVSAS 139
Query: 152 SHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSR 211
++ GD V+V + +G +G++ F+ + +++G G + +SR
Sbjct: 140 KFMKGGDDVSVYSDI--------------KGKCKKGAKE----FDGTKIFLGNGISELSR 181
Query: 212 AGIFRAS---EGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDM 268
IF +G+ V M ++ PSF +VL +FLQNLPS V +H LDPQ GE+ILD+
Sbjct: 182 KEIFSGLPELKGVGVRMTEPVYLSPSFDNVLPSYLFLQNLPSAVVSHVLDPQPGEKILDL 241
Query: 269 CAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRR- 327
CAAPGGKTT IA+L+ D+GEV+A+D+ KV I++ A +GL I + D KA++
Sbjct: 242 CAAPGGKTTHIAALMHDQGEVIALDKISKKVEKIKQNALLLGLNSIRAFCFDGTKALKLD 301
Query: 328 --KNESNDEPNMCNSKDNNYITSQTS 351
K+ + P + S D + + S
Sbjct: 302 MVKDTDGEPPFLPESFDRILLDAPCS 327
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 52/71 (73%), Gaps = 1/71 (1%)
Query: 421 FSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
F P SFDR+LLDAPCS +G RP + A T++ + ++ QR++F AV+L++PGG++VY
Sbjct: 312 FLPESFDRILLDAPCSGMGQRPNM-ACTWTLKEVMSYQPLQRKLFTVAVELLKPGGVLVY 370
Query: 481 STCTINPGENE 491
STCT+ ENE
Sbjct: 371 STCTVTLAENE 381
>gi|139948562|ref|NP_001077139.1| putative methyltransferase NSUN6 [Bos taurus]
gi|134024543|gb|AAI34425.1| NSUN6 protein [Bos taurus]
Length = 408
Score = 158 bits (399), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 104/317 (32%), Positives = 160/317 (50%), Gaps = 43/317 (13%)
Query: 32 FSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTI 91
F + L+ P ++ +RVNT + V L +Q + +
Sbjct: 39 FETLLHNLSHPPSFTTVRVNTHLASVQHVKNLLFDELQK--------------QFNGLSF 84
Query: 92 SESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACS 151
Q P L+ V+ + GP + EVIV +C AVLRGA VYVPG+++ S
Sbjct: 85 PVLQHPDLQDVLLIPVIGPRK-----NIKQQTCEVIVGAQCGSAVLRGAHVYVPGIVSAS 139
Query: 152 SHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSR 211
++ GD V+V + +G +G++ F+ + +++G G + +SR
Sbjct: 140 KFMKGGDDVSVYSDI--------------KGKCKKGAKE----FDGTKIFLGNGISELSR 181
Query: 212 AGIFRAS---EGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDM 268
IF +G+ V M ++ PSF +VL +FLQNLPS V +H LDPQ GE+ILD+
Sbjct: 182 KEIFSGLPELKGVGVRMTEPVYLSPSFDNVLPSYLFLQNLPSAVVSHVLDPQPGEKILDL 241
Query: 269 CAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRR- 327
CAAPGGKTT IA+L+ D+GEV+A+D+ KV I++ A +GL I + D KA++
Sbjct: 242 CAAPGGKTTHIAALMHDQGEVIALDKISKKVEKIKQNALLLGLNSIRAFCFDGTKALKLD 301
Query: 328 --KNESNDEPNMCNSKD 342
K+ + P + S D
Sbjct: 302 MVKDTDGEPPFLPESFD 318
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 52/71 (73%), Gaps = 1/71 (1%)
Query: 421 FSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
F P SFDR+LLDAPCS +G RP + A T++ + ++ QR++F AV+L++PGG++VY
Sbjct: 312 FLPESFDRILLDAPCSGMGQRPNM-ACTWTLKEVMSYQPLQRKLFTVAVELLKPGGVLVY 370
Query: 481 STCTINPGENE 491
STCT+ ENE
Sbjct: 371 STCTVTLAENE 381
>gi|296481451|tpg|DAA23566.1| TPA: NOL1/NOP2/Sun domain family, member 6 [Bos taurus]
Length = 408
Score = 158 bits (399), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 104/317 (32%), Positives = 160/317 (50%), Gaps = 43/317 (13%)
Query: 32 FSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTI 91
F + L+ P ++ +RVNT + V L +Q + +
Sbjct: 39 FETLLHNLSHPPSFTTVRVNTHLASVQHVKNLLFDELQK--------------QFNGLSF 84
Query: 92 SESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACS 151
Q P L+ V+ + GP + EVIV +C AVLRGA VYVPG+++ S
Sbjct: 85 PVLQHPDLQDVLLIPVIGPRK-----NIKQQTCEVIVGAQCGSAVLRGAHVYVPGIVSAS 139
Query: 152 SHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSR 211
++ GD V+V + +G +G++ F+ + +++G G + +SR
Sbjct: 140 KFMKGGDDVSVYSDI--------------KGKCKKGAKE----FDGTKIFLGNGISELSR 181
Query: 212 AGIFRAS---EGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDM 268
IF +G+ V M ++ PSF +VL +FLQNLPS V +H LDPQ GE+ILD+
Sbjct: 182 KEIFSGLPELKGVGVRMTEPVYLSPSFDNVLPSYLFLQNLPSAVVSHVLDPQPGEKILDL 241
Query: 269 CAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRR- 327
CAAPGGKTT IA+L+ D+GEV+A+D+ KV I++ A +GL I + D KA++
Sbjct: 242 CAAPGGKTTHIAALMHDQGEVIALDKISKKVEKIKQNALLLGLNSIRAFCFDGTKALKLD 301
Query: 328 --KNESNDEPNMCNSKD 342
K+ + P + S D
Sbjct: 302 MVKDTDGEPPFLPESFD 318
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 52/71 (73%), Gaps = 1/71 (1%)
Query: 421 FSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
F P SFDR+LLDAPCS +G RP + A T++ + ++ QR++F AV+L++PGG++VY
Sbjct: 312 FLPESFDRILLDAPCSGMGQRPNM-ACTWTLKEVMSYQPLQRKLFTVAVELLKPGGMLVY 370
Query: 481 STCTINPGENE 491
STCT+ ENE
Sbjct: 371 STCTVTLAENE 381
>gi|240978967|ref|XP_002403084.1| conserved hypothetical protein [Ixodes scapularis]
gi|215491291|gb|EEC00932.1| conserved hypothetical protein [Ixodes scapularis]
Length = 337
Score = 157 bits (398), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 107/321 (33%), Positives = 168/321 (52%), Gaps = 51/321 (15%)
Query: 16 NPQVEEYFIR----------AYGADH-FSRISKALTRPSCYSCIRVNTLKTTTDDVIQKL 64
PQVEE + A GAD + ++ + L+RP Y+ +RVNT +T+ V Q
Sbjct: 38 QPQVEEQLLAELRASCGQDDASGADERWRQLRRWLSRPPLYTTVRVNTRRTS---VGQAR 94
Query: 65 LAIIQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFV--KGSGPHTIDYGYEPDKP 122
+A+ ++ G+S + + L P L+ ++ V + H +
Sbjct: 95 VAVQEHLGTSHVRLGEAPLVLLH---------PCLDELLLVVSRQCRAHVVPSS------ 139
Query: 123 PKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRG 182
+EV+V C +AVLRGA V+VPGV+ +E G+ VAV +E G
Sbjct: 140 -REVVVDADCGQAVLRGAHVFVPGVLGAPKGLEAGERVAVFADLE--------------G 184
Query: 183 TVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIF--RASEGIAVDMHNRIFQLPSFYDVLE 240
+ L+G PY ER+ ++G GTA++SR IF + + G+AV M +F P ++
Sbjct: 185 SCLRG-YARPYRGERA--FLGNGTALVSRRDIFVSQLARGVAVRMTEPLFGCPPLNGLMT 241
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
+ LQNLPS++ AL P+ GE +LDMCAAPGGKTT +A+L+ D G +VA+DR+ +++
Sbjct: 242 ETLLLQNLPSVLCGRALGPRPGESVLDMCAAPGGKTTHLATLMDDTGLLVALDRAESRLS 301
Query: 301 DIQKLAAEMGLKCITTYKLDA 321
++ L GL C+ + DA
Sbjct: 302 RVRALCDLWGLSCVRAHAHDA 322
>gi|326669730|ref|XP_001919347.3| PREDICTED: putative methyltransferase NSUN6-like [Danio rerio]
Length = 462
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 107/332 (32%), Positives = 165/332 (49%), Gaps = 54/332 (16%)
Query: 11 PLLRWNPQVEEYFIRAYGAD-------------HFSRISKALTRPSCYSCIRVNTLKTTT 57
P L +P+V E+ Y D F + L+ P Y+C+RV+T
Sbjct: 5 PQLSMSPEVREHLHTVYTNDEAVCELGAGVAEQQFEALLWCLSHPPLYTCLRVSTHLHPL 64
Query: 58 DDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGY 117
DV +L ++ ++Q + P L V+ + GP +I
Sbjct: 65 RDVQHRLQQHLE---------------QIQCRCPAVHTHPELPDVLLLPVCGPRSI---- 105
Query: 118 EPDKP-PKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWG 176
+P +P VIV +C AVLRGA V+ PG+++ ++ GDVV+V VE
Sbjct: 106 QPVEPVASAVIVGSQCGSAVLRGAHVFTPGIISTHKFMKAGDVVSVFSDVEG-------- 157
Query: 177 LGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIF---RASEGIAVDMHNRIFQLP 233
TRG F +++G G + ++R+ +F + G+A+ M ++Q P
Sbjct: 158 -KCTRGAT---------EFNGKKVFVGNGVSEVNRSELFSSDKPGRGLAIRMTEPLYQSP 207
Query: 234 SFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVD 293
SF VL E+FLQNLPS+V + L P+ GER+LDMCAAPGGKTT IASL+ ++G VVA++
Sbjct: 208 SFDGVLTDELFLQNLPSVVVGYVLGPRPGERVLDMCAAPGGKTTHIASLMGNQGVVVALE 267
Query: 294 RSHNKVMDIQKLAAEMGLKCITTYKLDALKAV 325
+ +K+ I + A + L CI Y +++ AV
Sbjct: 268 KVRSKMEKILRNAQMLKLDCIKAYCCNSIHAV 299
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 50/71 (70%), Gaps = 1/71 (1%)
Query: 421 FSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
F SFDR+LLDAPCS LG RP + + +++ + ++ QR++F AV+L++ GG++VY
Sbjct: 313 FPEESFDRILLDAPCSGLGQRPNM-SYSWSLKEVCSYQPLQRKLFTTAVRLLKSGGVLVY 371
Query: 481 STCTINPGENE 491
STCT+ ENE
Sbjct: 372 STCTVTLAENE 382
>gi|326429758|gb|EGD75328.1| Nsun6 protein [Salpingoeca sp. ATCC 50818]
Length = 477
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 103/312 (33%), Positives = 153/312 (49%), Gaps = 44/312 (14%)
Query: 19 VEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADV 78
+EE + R+ F+ + + L P ++C+R+NTL T ++ IQ L
Sbjct: 35 LEEVWDRSASGQRFADLCERLAIPPAHTCLRINTLVNTREEAIQTL-------------- 80
Query: 79 ASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLR 138
L+ Q P L+ V+ + GP + PDK V+V C AVLR
Sbjct: 81 ----ARELEGTDYKFEQHPKLDDVLILPAIGPRRV----VPDKEGLFVVVDAACGAAVLR 132
Query: 139 GAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERS 198
G+ V+VPG+ ACSS V G VAV V + G L P ER+
Sbjct: 133 GSDVFVPGIRACSSGVHSGARVAVYADVHKACSTGQTKL--------------PPAEERA 178
Query: 199 G---LYIGQGTAMMSRAGIFRASE----GIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSI 251
+++G G A RA +FR+S+ G+ V+M + FQ P L+ + LQNLPS
Sbjct: 179 AKKIVFVGNGIAHFDRADVFRSSDAVTSGLGVEMGDIEFQTPCLGH-LDRSLVLQNLPSC 237
Query: 252 VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL 311
V +H L PQ GE ++DMCAAPGGKT IA+L+ + G + A +RS + + + +G+
Sbjct: 238 VASHVLAPQPGEHVVDMCAAPGGKTAHIAALMNNTGRITAYERSTKRCAALVQWLETVGV 297
Query: 312 KCITTYKLDALK 323
C + +K+DA K
Sbjct: 298 TCCSVFKMDARK 309
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 415 AENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRP 474
A K S DRVLLDAPC+ LG RP+ F + + +Q+++F AV L++P
Sbjct: 334 AVEKKKVQAGSVDRVLLDAPCTGLGQRPK-FEHATPLTDVIEAPSFQKKLFRTAVALLKP 392
Query: 475 GGIIVYSTCTINPGENEALCA 495
GG +VYSTC+ NP ENE + A
Sbjct: 393 GGTLVYSTCSFNPEENEGVVA 413
>gi|391330884|ref|XP_003739882.1| PREDICTED: putative methyltransferase NSUN6-like [Metaseiulus
occidentalis]
Length = 441
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 98/305 (32%), Positives = 155/305 (50%), Gaps = 37/305 (12%)
Query: 12 LLRWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNS 71
+ R V ++ F R+ + L P Y+ +RVNTL+TT D +KL A +
Sbjct: 10 VFRKQKDVADFLASQNAPGEFERLERWLAVPPQYTVLRVNTLRTTISDAKEKLRAYVDKC 69
Query: 72 GSSEADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRK 131
S NG+ + P L+ + V + + P + +++IV +
Sbjct: 70 ARS-------------NGSYVVLEHPQLDDTLIVVSP---KVPVSFAPCR--RQLIVGLE 111
Query: 132 CAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTD 191
C EAVLRGA VY+PGV+A + +GD+VAV V+Q TRG
Sbjct: 112 CGEAVLRGANVYIPGVLAAPGGLREGDMVAVYADVDQ---------KCTRGL-------- 154
Query: 192 PYYFERSGLYIGQGTAMMSRAGIFR--ASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLP 249
++ +++G G AM+SR IF+ + GIAV++ I Q P + + LQNLP
Sbjct: 155 KRWYTGEKMFVGNGRAMVSRDEIFKNNVNSGIAVEVTQPIQQCPPLNRIHPEIMTLQNLP 214
Query: 250 SIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEM 309
S+V A LDPQ G+ +LDMC+APGGKTT +A+L+++ G V+A+D++ ++ ++
Sbjct: 215 SVVCAKVLDPQPGQTVLDMCSAPGGKTTHLATLMKNTGTVIALDKAGARLEKTREKCELW 274
Query: 310 GLKCI 314
L C+
Sbjct: 275 NLTCV 279
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 49/71 (69%), Gaps = 1/71 (1%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYST 482
P +FDR+L+DAPCSALG RPRL ++ ++++ QR + A +L++ G IVYST
Sbjct: 300 PQTFDRILIDAPCSALGQRPRL-QYRLNLRQVQSYPCVQRALLRAACELLKDDGYIVYST 358
Query: 483 CTINPGENEAL 493
C+INP ENE +
Sbjct: 359 CSINPAENEMV 369
>gi|328869535|gb|EGG17913.1| NOL1/NOP2/Sun family protein [Dictyostelium fasciculatum]
Length = 507
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 100/313 (31%), Positives = 160/313 (51%), Gaps = 52/313 (16%)
Query: 19 VEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADV 78
V ++ + YG DH + I KA RP ++ IRVNT K ++ +L +
Sbjct: 68 VLDHLEKYYGKDHMNAIRKAQVRPPTFTTIRVNTSKCDRPHLLNQLRPYFE--------- 118
Query: 79 ASSVKGRLQNGTI-----------SESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVI 127
S++ +LQ+ I +E+ + +K GP + P K+V+
Sbjct: 119 --SIQFKLQDNNIIPFSNLVKEDTNETIQSITNQTILLKNHGP------FNPQPKYKQVV 170
Query: 128 VSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQG 187
V CAEAVLRG+ ++ PG++ H+ +GD+V+V V + Q DG RG ++ G
Sbjct: 171 VGVLCAEAVLRGSDIFAPGIIGSFKHIVEGDMVSVFVDLSQ---DG------KRGFIIDG 221
Query: 188 SQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVLEGEIFLQN 247
YY ER+ +++G G ++M+R + G+ + M RI+ P VL ++FLQ+
Sbjct: 222 -----YYAERT-VFVGNGVSLMNRLDYYSTRGGVGIKMTERIWDCPPLNGVLTDKLFLQH 275
Query: 248 LPSIVTAHALD--PQKGER----ILDMCAAPGGKTTAIASLLRDEG---EVVAVDRSHNK 298
LPSI+T +D P + E+ ILDMCAAPGGKTT IASL+++ G ++ A+D++ K
Sbjct: 276 LPSILTVFQMDLLPSQREKRSFNILDMCAAPGGKTTLIASLVKNNGLGDKITAIDKNKKK 335
Query: 299 VMDIQKLAAEMGL 311
+ L G
Sbjct: 336 AKMVSDLCRVNGF 348
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/95 (50%), Positives = 56/95 (58%), Gaps = 7/95 (7%)
Query: 403 NGPGRNQCLGGRAENSKG------FSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRN 456
NG N + RA +SK F SFDR+LLD PCS LG RPR F + L N
Sbjct: 346 NGFDENGLVTVRAGDSKKLLIEGVFKEESFDRILLDGPCSGLGTRPR-FDEATLLIDLDN 404
Query: 457 HGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENE 491
QR + D AV+L+ PGGI+VYSTCTINP ENE
Sbjct: 405 SACLQRVLIDAAVKLLAPGGILVYSTCTINPCENE 439
>gi|19344072|gb|AAH25622.1| Nsun6 protein [Mus musculus]
Length = 362
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 84/201 (41%), Positives = 123/201 (61%), Gaps = 21/201 (10%)
Query: 129 SRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGS 188
S +C AVLRGA VYVPG+++ S ++ GDV++V + G +G+
Sbjct: 3 SAQCGNAVLRGAHVYVPGIVSASKFMKAGDVISVYSDI--------------NGKCKKGA 48
Query: 189 QTDPYYFERSGLYIGQGTAMMSRAGIFRAS---EGIAVDMHNRIFQLPSFYDVLEGEIFL 245
+ F+ + +++G G + +SR IF +GI + M I+ PSF +VL IFL
Sbjct: 49 KE----FDGTKVFLGNGISELSRKDIFNGLPDLKGIGIRMTEPIYLSPSFDNVLPSYIFL 104
Query: 246 QNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKL 305
QNLPS V AH LDPQ GE+ILDMCAAPGGKTT A+L++D+GEV+A+D+ KV +++
Sbjct: 105 QNLPSTVVAHVLDPQPGEKILDMCAAPGGKTTHTAALMQDKGEVIALDKILTKVNKLKQN 164
Query: 306 AAEMGLKCITTYKLDALKAVR 326
A+ +GL I + DA KA++
Sbjct: 165 ASLLGLHSIRAFCFDATKALK 185
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
Query: 416 ENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPG 475
E F P SFDR++LDAPCS +G RP + A T++ + ++ QR++ AVQL++PG
Sbjct: 193 EGGPPFLPESFDRIILDAPCSGMGQRPNM-ACTWTLKEVTSYQPLQRKLLHVAVQLLKPG 251
Query: 476 GIIVYSTCTINPGENE 491
G++VYSTCTI ENE
Sbjct: 252 GVLVYSTCTITLAENE 267
>gi|156375011|ref|XP_001629876.1| predicted protein [Nematostella vectensis]
gi|156216886|gb|EDO37813.1| predicted protein [Nematostella vectensis]
Length = 491
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 104/300 (34%), Positives = 150/300 (50%), Gaps = 36/300 (12%)
Query: 32 FSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTI 91
F R+ L +P ++ +RVNTL T + ++L + S V T+
Sbjct: 72 FDRLLSCLGQPPLFTTVRVNTLLVTISEAKEQLEQALLKQYSERERPCLEV-------TV 124
Query: 92 SESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACS 151
S L V+ +KGSGPH + K K++IV C AVLRGA V+ PGV+
Sbjct: 125 HHS----LPDVLVIKGSGPH-----LDLPKHTKQIIVDTHCGTAVLRGADVFAPGVIGAH 175
Query: 152 SHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSR 211
++ D V+V +++ G + PY S L++G G A+MSR
Sbjct: 176 PGIQSEDDVSVFADLDKQCRRGC---------------SKPY--NGSTLFVGNGKAVMSR 218
Query: 212 AGIFRAS---EGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDM 268
+ IF + GIAV M ++ PS VL +FLQNLPS V H L PQ GE +LDM
Sbjct: 219 SDIFCTNGKLSGIAVRMCQPLYDCPSLSGVLTDVLFLQNLPSAVVGHILGPQSGESVLDM 278
Query: 269 CAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRK 328
CAAPGGKT IA+L++++G +VA D+S K+ I + + T+ +DA KA+ K
Sbjct: 279 CAAPGGKTCHIAALMKNKGLIVAFDKSQPKIQKIIANCEMQKVSIVKTHVIDASKALDTK 338
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 53/77 (68%), Gaps = 1/77 (1%)
Query: 415 AENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRP 474
+ S + P +FDR+LLDAPCSALG RP+ ++ L++ K QR++F AV L+RP
Sbjct: 347 STTSPPYPPEAFDRILLDAPCSALGQRPQ-SVVHMKLKELQSFPKLQRKIFSSAVGLLRP 405
Query: 475 GGIIVYSTCTINPGENE 491
GG +VYSTCTI P ENE
Sbjct: 406 GGTLVYSTCTITPEENE 422
>gi|410909259|ref|XP_003968108.1| PREDICTED: putative methyltransferase NSUN6-like [Takifugu
rubripes]
Length = 471
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 108/308 (35%), Positives = 162/308 (52%), Gaps = 48/308 (15%)
Query: 32 FSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLA-IIQNSGSSEADVASSVKGRLQNGT 90
F ++ + L+ P Y+C+R +T +++ KL + + G A+ AS LQ
Sbjct: 39 FQKLLRCLSHPPSYTCVRASTHLAPLEEIRLKLAEELAKQMGQCSAEEAS-----LQ--I 91
Query: 91 ISESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPK---------EVIVSRKCAEAVLRGAQ 141
++ IP V+ + GP YE + P+ EV+V +C AVLRGA
Sbjct: 92 LTHPHIPD---VLLLPVDGPR-----YERNTKPECLHVEQVSSEVVVGAQCGSAVLRGAH 143
Query: 142 VYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRG-TVLQGSQTDPYYFERSGL 200
V+ PG++A +++ GDVV+V +E TRG T QG +
Sbjct: 144 VFAPGIVASPKYMKAGDVVSVFSDLEG---------RCTRGATSFQGKRA---------- 184
Query: 201 YIGQGTAMMSRAGIFRASE---GIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHAL 257
++G G A M R+ +F + E G+ V M ++Q PSF VL +FLQNLPS+V H L
Sbjct: 185 FVGNGVARMDRSSLFCSDEPVKGVGVQMVEPLYQSPSFDGVLPSLVFLQNLPSVVAGHVL 244
Query: 258 DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTY 317
P+ GER+LDMCAAPGGKT IA L+ D+G+VVA+DR NK+ I + A + L+ I +
Sbjct: 245 GPRPGERVLDMCAAPGGKTCHIAVLMGDQGKVVALDRIRNKIDRILENAQALQLRSIKAF 304
Query: 318 KLDALKAV 325
++ +AV
Sbjct: 305 CFNSTQAV 312
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 50/71 (70%), Gaps = 1/71 (1%)
Query: 421 FSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
+ P SFDRVLLDAPCS LG RP + +++ + ++ QR++F AV+L++ GG++VY
Sbjct: 325 YPPESFDRVLLDAPCSGLGQRPNM-GTTWSLKEICSYQPLQRKLFQAAVKLLKRGGVLVY 383
Query: 481 STCTINPGENE 491
STCT+ ENE
Sbjct: 384 STCTVTLAENE 394
>gi|330842051|ref|XP_003292999.1| hypothetical protein DICPUDRAFT_41394 [Dictyostelium purpureum]
gi|325076705|gb|EGC30470.1| hypothetical protein DICPUDRAFT_41394 [Dictyostelium purpureum]
Length = 491
Score = 151 bits (382), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 96/331 (29%), Positives = 172/331 (51%), Gaps = 44/331 (13%)
Query: 18 QVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEAD 77
+V + ++ YG + +I K++T Y+ IRVN+ KTT ++K +I + +E +
Sbjct: 41 EVYNHLLKYYGKERMEQIQKSMTDAFLYTTIRVNS-KTTNKAQLKK--DMINHFEENERN 97
Query: 78 VAS--SVKGRLQNGTISESQIPG---------LEYVVFVKGSGPHTIDYGYEPDKPPKEV 126
+ + K L+ I S+ P L +F+K P ++
Sbjct: 98 LENRNHFKKLLEFNEIINSKSPSTTNEIEKQILNDTLFIKNEKNLKTPLPIYP-----QI 152
Query: 127 IVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQ 186
IV C EAVLRG+ ++ G++A + +++KGD+V+V V ++ L +G++++
Sbjct: 153 IVDIMCGEAVLRGSHIFSVGILASNKYIKKGDMVSVFVNLDSLVL---------KGSIIE 203
Query: 187 GSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVLEGEIFLQ 246
G F+ ++G G +++ R+ G+ ++M R+F P VLE +FLQ
Sbjct: 204 G------VFKEKSAFVGNGISLLDRSEYNNTKTGVGIEMTERLFFCPPLNGVLEQNMFLQ 257
Query: 247 NLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDE---------GEVVAVDRSHN 297
+LPS++T + L+P+ G+RILDMCAAPGGKTT IASL++ + E++A+D++
Sbjct: 258 HLPSLMTVYQLEPKLGDRILDMCAAPGGKTTLIASLIQQQFDQQPSNNSTEIIALDKNKG 317
Query: 298 KVMDIQKLAAEMGLKC-ITTYKLDALKAVRR 327
KV + L ++ L + Y D+ K ++
Sbjct: 318 KVKKVLDLCKKLSLDSFVKCYSRDSSKLLKE 348
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 48/71 (67%), Gaps = 1/71 (1%)
Query: 421 FSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
F SFD++LLD PCS LG +PR + I L+N +Q+++ D AV L++ GG +VY
Sbjct: 359 FKEGSFDKILLDGPCSGLGSKPRFIETSKLI-DLQNCSDFQKKLLDVAVGLLKEGGTLVY 417
Query: 481 STCTINPGENE 491
STCTINP ENE
Sbjct: 418 STCTINPEENE 428
>gi|290985269|ref|XP_002675348.1| predicted protein [Naegleria gruberi]
gi|284088944|gb|EFC42604.1| predicted protein [Naegleria gruberi]
Length = 424
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 81/225 (36%), Positives = 128/225 (56%), Gaps = 8/225 (3%)
Query: 124 KEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGT 183
K+++V RKC EAVLRGA V+ PG++ S + G +A+ + T G+ T
Sbjct: 62 KDIVVDRKCGEAVLRGADVFAPGILGISKNCHSGSEIAILCDISSQT-KKGFRFEKTIEE 120
Query: 184 VLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRAS-EGIAVDMHNRIFQLPSFYDVLE-- 240
++Q + Y ++ +Y+G G M R IF+A+ +GI +++ ++ S ++ +
Sbjct: 121 MIQIDENTKY---QNFIYVGNGILKMDRTSIFQANVKGIGLEVTQPFYETCSLNEISQTY 177
Query: 241 -GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
E F QN+ S+V AH LDP+KGE+ILDMCA PGGKTT I++L+ +EGE++ DR KV
Sbjct: 178 YNEFFAQNICSMVVAHLLDPKKGEKILDMCACPGGKTTHISNLMENEGELICCDRQKGKV 237
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNN 344
++KL+ ++G + LD KA RR N + E + N
Sbjct: 238 DLLKKLSEKLGYSVMKPTVLDGTKATRRVNTDSSENQKSKKRKTN 282
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 80/147 (54%), Gaps = 4/147 (2%)
Query: 347 TSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKVSNEKGVERTYVSKADTRKNMRRMRNGPG 406
T+ S+ M+ E+ I + G +K+S + G + D K RR+
Sbjct: 214 TTHISNLMENEGEL--ICCDRQKGKVDLLKKLSEKLGYSVMKPTVLDGTKATRRVNTDSS 271
Query: 407 RNQCLGGRAENSKG--FSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRM 464
NQ R N + N FDRVL+DAPCS LG RP L E ++ SL+ +YQR++
Sbjct: 272 ENQKSKKRKTNEEQVFLEENYFDRVLVDAPCSGLGQRPTLSFKEFSLDSLKKTAEYQRKI 331
Query: 465 FDQAVQLVRPGGIIVYSTCTINPGENE 491
+A ++++PGGI+V+STCTI+P ENE
Sbjct: 332 LAEAFKVLKPGGILVFSTCTISPMENE 358
>gi|443731167|gb|ELU16404.1| hypothetical protein CAPTEDRAFT_182050 [Capitella teleta]
Length = 426
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 89/296 (30%), Positives = 155/296 (52%), Gaps = 40/296 (13%)
Query: 31 HFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGT 90
+ + + L P ++ +R+N L+++ + + +L I++ S+ +
Sbjct: 10 ELATVLRHLALPPMFTTLRINELQSSKESITDQLQEILKKQYESKDMEPLPI-------- 61
Query: 91 ISESQIPG--LEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVM 148
+P L +++K GP E + +V+V C AVLRGA V+ G+
Sbjct: 62 -----VPHCCLRDALYIKHRGPR-----LELPQLQLKVVVGVACGMAVLRGADVFAQGIT 111
Query: 149 ACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAM 208
++++ G++V+V V DGG G+T+ FE + +++G G +
Sbjct: 112 GAPANLQAGEMVSVYADV-----DGGCRKGLTKP------------FEGTTIFVGNGRML 154
Query: 209 MSRAGIFRASE---GIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERI 265
MSR IF + E G+A+ M+ +++ PS +L +F QNLPS++ +H L+PQ G+ I
Sbjct: 155 MSRRDIFVSMEKVSGMAIQMNQPLYEAPSLSGILPSLVFPQNLPSVLCSHVLNPQPGQTI 214
Query: 266 LDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
+D+CAAPGGKT +ASL++++G VVA+D++ K+ + A E GL CI Y DA
Sbjct: 215 IDLCAAPGGKTVHLASLMKNQGRVVALDKTSGKISKVLSNAKEWGLSCIEAYAFDA 270
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 410 CLGGRAENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAV 469
C E + P SFD VLLDAPCSALG RP A ++ + ++ QR++F +AV
Sbjct: 275 CSTSDTEGPPPYPPLSFDHVLLDAPCSALGQRPSA-ANSMRVREVSSYPVLQRKIFTEAV 333
Query: 470 QLVRPGGIIVYSTCTINPGENE 491
L+R GG +V+STCT+ ENE
Sbjct: 334 ALLRDGGTLVFSTCTVTAEENE 355
>gi|219121812|ref|XP_002181253.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407239|gb|EEC47176.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 435
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 130/477 (27%), Positives = 197/477 (41%), Gaps = 120/477 (25%)
Query: 31 HFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEA-------DVASSVK 83
H ++ A+ S RVNT++ T +V+ KL+ + E ++ +
Sbjct: 50 HLEKVLAAMKVSPRTSTFRVNTIRATRTEVVDKLVLAMNEWAEREGLCTPNPLPISVAAH 109
Query: 84 GRLQN----------GTISESQIPGLEYVVFVKGSGPHTIDYGYEPDKPP---------- 123
L++ T+S +IP L+ + S +G E +
Sbjct: 110 AVLEDIVSVDIAQSPTTLSSCRIPPLQVELDTDSS------FGDEARRARRHRLGWPTTC 163
Query: 124 KEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGT 183
K ++ R C EAVLRG+ V+V G++A + G +AV + QP W RG
Sbjct: 164 KVIVCDRLCGEAVLRGSHVFVRGILAADPSIRVGQALAVYADLPQPQ-RPSW----PRGL 218
Query: 184 VLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVLEGEI 243
++ + + +++G G A + A F DM LP VL+
Sbjct: 219 AVES-------YTGTCVFVGIGQACCTHASSF--------DMGP---LLPPLSGVLDTHA 260
Query: 244 FLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQ 303
FLQNLPS V HAL+PQ G+ ILD+CAAPGGK + +AS +++ ++A DRS +
Sbjct: 261 FLQNLPSTVVVHALNPQPGDTILDLCAAPGGKASHVASFTKNQAVILAADRSRS------ 314
Query: 304 KLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSI 363
K+ A+K ++ + + LH
Sbjct: 315 --------------KVVAMK-------------------QRFLALGCTSIVPLH------ 335
Query: 364 AAEGLNGDKSCKEKVSNEKGVERTYVSKADTRKNMRRMRNGPGRNQCLGGRAENSKGFSP 423
LN C + E G R V++ + R+G N K F P
Sbjct: 336 ----LNATACCMD----EPGRPRCSVAEIRAAAKVSE-RDG----------LLNVKYFFP 376
Query: 424 NSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
SFDR+LLD PCSALGLRP+L + L YQR+ AV L++PGGI+ Y
Sbjct: 377 GSFDRILLDPPCSALGLRPKLQIGPTRVDDLLAFATYQRKFVPPAVALLKPGGILTY 433
>gi|431917694|gb|ELK16959.1| Putative methyltransferase NSUN6 [Pteropus alecto]
Length = 460
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 99/309 (32%), Positives = 150/309 (48%), Gaps = 57/309 (18%)
Query: 32 FSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTI 91
F + L+ P ++ +RVN+ + V L +Q + ++
Sbjct: 39 FETLLNNLSHPPSFTTVRVNSHLASVQHVKNLLFDELQK--------------QFNGLSV 84
Query: 92 SESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACS 151
Q P L+ V+ + GP +K E IV +C AVLRGA VYVPG+++ S
Sbjct: 85 PILQHPDLQDVLLIPVIGPRK-----NINKKQCEAIVGAQCGNAVLRGAHVYVPGIVSAS 139
Query: 152 SHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSR 211
+ +G++ F+ + +++G G + +SR
Sbjct: 140 -----------------------------KCKCKKGAKE----FDGTKVFLGNGISEVSR 166
Query: 212 AGIFRAS---EGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDM 268
IF +GI + M ++ PSF +VL +FLQNLPS V H LDPQ GERILD+
Sbjct: 167 KEIFSGLPELKGIGIRMTEPVYLSPSFDNVLSSYLFLQNLPSAVVTHVLDPQPGERILDL 226
Query: 269 CAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVR-- 326
CAAPGGKTT IA+L+ D+GEV+A+D+ NKV I++ A +GL I + D KA++
Sbjct: 227 CAAPGGKTTHIAALMHDQGEVIALDKISNKVKKIKQNALLLGLNSIRAFCFDGTKALKLD 286
Query: 327 RKNESNDEP 335
R ++ EP
Sbjct: 287 RIKDTEGEP 295
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Query: 416 ENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPG 475
E F P SFDR+LLDAPCS +G RP + A T++ + ++ QR++F AV+L++PG
Sbjct: 292 EGEPPFLPESFDRILLDAPCSGMGQRPNM-ACSWTLKEVTSYQPLQRKLFTVAVKLLKPG 350
Query: 476 GIIVYSTCTINPGENE 491
G++VYSTCTI ENE
Sbjct: 351 GVLVYSTCTITLAENE 366
>gi|452820975|gb|EME28011.1| alkane 1-monooxygenase isoform 2 [Galdieria sulphuraria]
Length = 957
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 113/376 (30%), Positives = 183/376 (48%), Gaps = 41/376 (10%)
Query: 16 NPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLA-IIQNSGSS 74
N +++ + + YG D+F + + L+ P + RVNTLKTT D + L +I+ +
Sbjct: 304 NEELQNFLVDIYGKDNFHGLCRKLSVPPP-TTFRVNTLKTTADKFCESLRERVIRQAKHR 362
Query: 75 EADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAE 134
+ D K R+ P ++ V+ + GP D P V C E
Sbjct: 363 QVDEKELAKLRVIVH-------PKIKDVIQLDTLGPFDRDTQGLP-----VACVDSFCGE 410
Query: 135 AVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYY 194
+V RGA VY G++A S +V V + +G ITRG+
Sbjct: 411 SVFRGADVYAGGIVALESSAAVNQLVQVWM--------DPFG-AITRGST---------Q 452
Query: 195 FERSGL-YIGQGTAMMSRAGIFRAS--EGIAVDMHNRIFQLPSFYDVL-EGEIFLQNLPS 250
F+ S L Y+G G + SR IF +S EG+A+ + ++ PS +D++ +G LQNLP
Sbjct: 453 FDTSRLIYVGNGLLLQSRREIFHSSVCEGLAIQIVEPVYFAPSLFDIVSQGIGILQNLPC 512
Query: 251 IVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG 310
V H +DP+ G+RILD+CA+PGGKT+ +A+L+ ++G +VA+DR+ KV I+ L + G
Sbjct: 513 TVVGHVMDPKPGQRILDLCASPGGKTSHLATLMHNQGTLVALDRNRKKVEAIESLCKKWG 572
Query: 311 LKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNG 370
+ + +Y +DA K E + E + + K ++ DS+ + P +A GL
Sbjct: 573 IDIVYSYVVDATKFRNYIQEFSSEQDHFSVKPP--FIRESFDSVLVD---PPCSAFGLRP 627
Query: 371 DKSCKEKVSNEKGVER 386
+ + KG R
Sbjct: 628 KFQYTLSMKDWKGFSR 643
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Query: 421 FSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
F SFD VL+D PCSA GLRP+ F +++ + ++Q+ + L++PGG +VY
Sbjct: 606 FIRESFDSVLVDPPCSAFGLRPK-FQYTLSMKDWKGFSRFQKIFLLAGILLLKPGGCLVY 664
Query: 481 STCTINPGENE 491
STCT++P ENE
Sbjct: 665 STCTLDPLENE 675
>gi|66803617|ref|XP_635647.1| NOL1/NOP2/Sun family protein [Dictyostelium discoideum AX4]
gi|60463974|gb|EAL62137.1| NOL1/NOP2/Sun family protein [Dictyostelium discoideum AX4]
Length = 501
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 97/345 (28%), Positives = 166/345 (48%), Gaps = 53/345 (15%)
Query: 18 QVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKL------------- 64
+V + I+ YG +H RI K++T+ Y+ IRVNT+ T D ++ L
Sbjct: 36 EVLNHLIKYYGKEHMERIQKSMTQTFLYTTIRVNTMNTNKDKLLIDLSNHFKTNEKSIEN 95
Query: 65 LAIIQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPK 124
I N S + + N E + + +F+K GP P
Sbjct: 96 QEIFTNFKSFNDILNNIENNNNDNDNNDEIKNQISKDTIFIKTIGPLI------PKPIYP 149
Query: 125 EVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTV 184
++IV C EAVLRG+ ++ GV+ + +++KG++V+V V ++ +++G +
Sbjct: 150 QIIVDLICGEAVLRGSNIFSIGVLGSNKYIKKGNMVSVFVTIDS---------RVSKGEI 200
Query: 185 LQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVLEGEIF 244
+ F+ +IG G +++ R + G+A++M R++ P VLE ++F
Sbjct: 201 FEDC------FKEKCAFIGNGISLLDRDDYHQTRVGVAIEMTERLYVCPPLNSVLEDKMF 254
Query: 245 LQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRD------------------E 286
LQ+LPSI T + L+P+ G++I+DMCAAPGGKTT IASL++ +
Sbjct: 255 LQHLPSIYTVYQLEPKLGDKIIDMCAAPGGKTTLIASLIQQFEINNNQNNQKYQNNNEIK 314
Query: 287 GEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALKAVRRKNE 330
E+ A+D++ KV I L + L K +T D+ K + +
Sbjct: 315 TEIFALDKNKGKVKKIIDLCKRLSLDKYVTCLAKDSSKLTKENQQ 359
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/71 (57%), Positives = 53/71 (74%), Gaps = 1/71 (1%)
Query: 421 FSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
F NSFD+VLLD PCS LG RPRL + + L N ++Q+++ DQAV L++PGGI+VY
Sbjct: 367 FQSNSFDKVLLDGPCSGLGSRPRLIESSSLV-DLTNSSEFQKKLIDQAVSLLKPGGILVY 425
Query: 481 STCTINPGENE 491
STC+INP ENE
Sbjct: 426 STCSINPEENE 436
>gi|452820974|gb|EME28010.1| alkane 1-monooxygenase isoform 1 [Galdieria sulphuraria]
Length = 995
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 112/375 (29%), Positives = 183/375 (48%), Gaps = 39/375 (10%)
Query: 16 NPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLA-IIQNSGSS 74
N +++ + + YG D+F + + L+ P + RVNTLKTT D + L +I+ +
Sbjct: 342 NEELQNFLVDIYGKDNFHGLCRKLSVPPP-TTFRVNTLKTTADKFCESLRERVIRQAKHR 400
Query: 75 EADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAE 134
+ D K R+ P ++ V+ + GP D P V C E
Sbjct: 401 QVDEKELAKLRVIVH-------PKIKDVIQLDTLGPFDRDTQGLP-----VACVDSFCGE 448
Query: 135 AVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYY 194
+V RGA VY G++A S +V V + +G ITRG+ +Q D
Sbjct: 449 SVFRGADVYAGGIVALESSAAVNQLVQVWM--------DPFG-AITRGS----TQFD--- 492
Query: 195 FERSGLYIGQGTAMMSRAGIFRAS--EGIAVDMHNRIFQLPSFYDVL-EGEIFLQNLPSI 251
+Y+G G + SR IF +S EG+A+ + ++ PS +D++ +G LQNLP
Sbjct: 493 -TSRLIYVGNGLLLQSRREIFHSSVCEGLAIQIVEPVYFAPSLFDIVSQGIGILQNLPCT 551
Query: 252 VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL 311
V H +DP+ G+RILD+CA+PGGKT+ +A+L+ ++G +VA+DR+ KV I+ L + G+
Sbjct: 552 VVGHVMDPKPGQRILDLCASPGGKTSHLATLMHNQGTLVALDRNRKKVEAIESLCKKWGI 611
Query: 312 KCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGD 371
+ +Y +DA K E + E + + K ++ DS+ + P +A GL
Sbjct: 612 DIVYSYVVDATKFRNYIQEFSSEQDHFSVKPP--FIRESFDSVLVD---PPCSAFGLRPK 666
Query: 372 KSCKEKVSNEKGVER 386
+ + KG R
Sbjct: 667 FQYTLSMKDWKGFSR 681
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Query: 421 FSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
F SFD VL+D PCSA GLRP+ F +++ + ++Q+ + L++PGG +VY
Sbjct: 644 FIRESFDSVLVDPPCSAFGLRPK-FQYTLSMKDWKGFSRFQKIFLLAGILLLKPGGCLVY 702
Query: 481 STCTINPGENE 491
STCT++P ENE
Sbjct: 703 STCTLDPLENE 713
>gi|196009916|ref|XP_002114823.1| hypothetical protein TRIADDRAFT_28123 [Trichoplax adhaerens]
gi|190582885|gb|EDV22957.1| hypothetical protein TRIADDRAFT_28123 [Trichoplax adhaerens]
Length = 426
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 90/295 (30%), Positives = 146/295 (49%), Gaps = 38/295 (12%)
Query: 34 RISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTISE 93
+ K L P + +RVNT+ T D+ + L II+ +L N I
Sbjct: 8 HLQKILAYPPLLTILRVNTVHFTIDEAEKMLRDIIEKRAER----------KLANLQILR 57
Query: 94 SQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSH 153
P + V+ + + I KEVIV +C +VLRGA V+ G+ +
Sbjct: 58 H--PVIPDVLMIPAQINNDITV------VGKEVIVGSQCGMSVLRGANVFAIGIRGADPN 109
Query: 154 VEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAG 213
++ GD V+V + DG F L++G G A +SR
Sbjct: 110 IQIGDTVSVYADIHDICRDGTTA-----------------KFTEEKLFVGNGIAKISRRE 152
Query: 214 IFRASE---GIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCA 270
+F+ + GIAV++ ++ P+ + + +FLQNLPS+V +H L+P +G+ ILDMC+
Sbjct: 153 LFKGNNKPRGIAVEVSEPLYLFPALNGIGDEFVFLQNLPSVVASHVLNPHEGDTILDMCS 212
Query: 271 APGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAV 325
APGGK T IA+L++++G ++A+D+S +K+ I+ A + L CI + D+ KAV
Sbjct: 213 APGGKATHIATLMKNKGTIIALDKSKSKLHKIKSNAERLNLSCIEVFAFDSTKAV 267
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 50/71 (70%), Gaps = 1/71 (1%)
Query: 421 FSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
F+ SFDR+LLD PCS +G RP L A + + + LR++ YQR++ QA QL++ GGI+VY
Sbjct: 282 FALESFDRILLDPPCSGMGQRPCL-AYKMSAKELRSYSCYQRKLLSQAFQLLKVGGILVY 340
Query: 481 STCTINPGENE 491
TCT+ ENE
Sbjct: 341 CTCTLTLSENE 351
>gi|198419141|ref|XP_002127214.1| PREDICTED: similar to NOL1/NOP2/Sun domain family, member 6 [Ciona
intestinalis]
Length = 445
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 106/308 (34%), Positives = 154/308 (50%), Gaps = 51/308 (16%)
Query: 39 LTRPSCYSCIRVNTLKTTTDDVIQKLLA----IIQNSGSSEADVASSVKGRLQNGTISES 94
++ P ++ +RVN + D VI++L A + +G SEA V Q+ + +
Sbjct: 3 ISIPPLFTTLRVNETEQV-DSVIKELEAKLKILYSANGYSEAPVI------FQHSQLKST 55
Query: 95 QIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHV 154
+ Y I + Y P VIV C AVLRGA V+VPG++ + V
Sbjct: 56 IVIPTLY---------QDIMHSYPP------VIVDHGCGMAVLRGADVFVPGILCMPTGV 100
Query: 155 EKGDVVAVSVAVEQPTLDGGWGL-GITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAG 213
+ GD V+V + GG L G+TR +E L++G G + SR
Sbjct: 101 QVGDKVSVCADI------GGSCLRGMTR-------------YEGQMLFVGNGVMLKSRND 141
Query: 214 IFRA---SEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCA 270
IF+ ++G + M IF DVL +IF QNLPSI+ H L+PQ+G+ +LDMCA
Sbjct: 142 IFKGNNITKGSGIRMECPIFLSLCLNDVLPSKIFAQNLPSIIVGHVLNPQEGDIVLDMCA 201
Query: 271 APGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG--LKCITTYKLDALKAVRRK 328
APGGKT+ I SLLR G +VAVDRS +KV I++ AA++G +T + D+ K
Sbjct: 202 APGGKTSHIVSLLRGRGRLVAVDRSSSKVEKIKQNAAKLGQMADVLTVFTADSRKLCSDD 261
Query: 329 NESNDEPN 336
+ E N
Sbjct: 262 SGDKSEEN 269
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 62/86 (72%), Gaps = 5/86 (5%)
Query: 412 GGRAENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEET----IQSLRNHGKYQRRMFDQ 467
G ++E +K FS + FD++LLDAPCSALG RP+ + ++ +++++++ QR++F+
Sbjct: 263 GDKSEENK-FSSSYFDKILLDAPCSALGQRPKCWLENQSNVNKMKNIKSYPALQRQLFNT 321
Query: 468 AVQLVRPGGIIVYSTCTINPGENEAL 493
AV+L++PGG +VYSTCT ENE L
Sbjct: 322 AVRLLKPGGTLVYSTCTTTVDENEGL 347
>gi|339242639|ref|XP_003377245.1| putative methyltransferase NSUN6 [Trichinella spiralis]
gi|316973969|gb|EFV57510.1| putative methyltransferase NSUN6 [Trichinella spiralis]
Length = 336
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 97/289 (33%), Positives = 147/289 (50%), Gaps = 39/289 (13%)
Query: 42 PSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTISESQIPGLEY 101
P YS +RVNT+K + I Q E ++ K + +N S L+
Sbjct: 12 PPLYSTVRVNTMK----------IGIHQAKERMEILLSEQYKAK-ENKKPEVSLHWCLKD 60
Query: 102 VVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVA 161
V+ + GSGPH E + P E+ V +KC ++VLRGA +Y G++ + +G V+
Sbjct: 61 VLVLTGSGPH------EKEPFPTEIYVDKKCGKSVLRGADIYSVGILGSNRWFAEGSNVS 114
Query: 162 VSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRAS--- 218
V + L+G LG R PY ++ L++G G +SR +F+
Sbjct: 115 VYM-----DLEGKCRLGWKR----------PY--DKRKLFLGNGVIAISRDSLFKTKLMK 157
Query: 219 --EGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKT 276
+ V M ++ P Y ++E F QNLPSI+ H L+PQ GE ILD+CAAPGGKT
Sbjct: 158 KQPEMGVLMTAGVWNHPKLYGIVEDWGFPQNLPSIICTHVLNPQPGEVILDLCAAPGGKT 217
Query: 277 TAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAV 325
T IA+L +D+ VVAVD ++ ++++ A ++ LK I DA+K V
Sbjct: 218 THIATLTKDQARVVAVDDCSKRLQELKENAKKLNLKSIEPNLADAVKLV 266
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 9/80 (11%)
Query: 416 ENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQ--AVQLVR 473
EN+K + S + L DA +G+R + I+S K + D+ AV+L++
Sbjct: 245 ENAKKLNLKSIEPNLADA-VKLVGMR------KGIIKSFNIENKLEITFSDKVPAVRLLK 297
Query: 474 PGGIIVYSTCTINPGENEAL 493
PGG +VYSTCT+N ENE +
Sbjct: 298 PGGTLVYSTCTLNKDENEGI 317
>gi|221122446|ref|XP_002154232.1| PREDICTED: putative methyltransferase NSUN6-like [Hydra
magnipapillata]
Length = 452
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 101/304 (33%), Positives = 150/304 (49%), Gaps = 43/304 (14%)
Query: 25 RAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVKG 84
+ Y + + I +++P + +RVNTLK T D+ I L +++S SE+ S K
Sbjct: 16 QLYPTKNENEILDVISKPPKNTVLRVNTLKVTLDEAIIVLNNFLKDS--SESLGFSVSKH 73
Query: 85 RLQNGTISESQIPGLEYVVFVKGS--GPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGAQV 142
RL V+FV S H Y KEVIV C AVLRGA V
Sbjct: 74 RL------------FSDVLFVSSSEVKDHLAIYN-------KEVIVDVHCGAAVLRGAHV 114
Query: 143 YVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYI 202
+ PGV+A S+ +++GD+V+V V D G T+ F +I
Sbjct: 115 FAPGVLAASADMKQGDMVSVYADV-----DHKCRRGYTK------------VFTGRKFFI 157
Query: 203 GQGTAMMSRAGIFRASE---GIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDP 259
G G A +R +F + G+AV M + PSF + F QNLPSI+ H +P
Sbjct: 158 GNGLAEFNRDTLFEHNAKIIGVAVKMLSMKIPQPSFSKLNLELFFPQNLPSILVGHICNP 217
Query: 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKL 319
Q G+ ILDMCA+PGGKT+ +A L++++G ++A+D+S K+ I + MGL + +
Sbjct: 218 QDGDLILDMCASPGGKTSHVAVLMKNQGTIIAIDKSEKKISKITENCVIMGLTNVKCFAY 277
Query: 320 DALK 323
D+ K
Sbjct: 278 DSSK 281
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 52/71 (73%), Gaps = 1/71 (1%)
Query: 421 FSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
F P FD++LLD PCS +G RP+L + T + L+++ YQ+++F QAV L++PGG ++Y
Sbjct: 307 FPPCFFDKILLDPPCSGIGQRPQLRSVL-TDKELQSYPIYQKKLFQQAVSLLKPGGRLIY 365
Query: 481 STCTINPGENE 491
STCT+ P ENE
Sbjct: 366 STCTLLPQENE 376
>gi|375081855|ref|ZP_09728931.1| Sun/NOL1/NOP nucleolar protein [Thermococcus litoralis DSM 5473]
gi|374743469|gb|EHR79831.1| Sun/NOL1/NOP nucleolar protein [Thermococcus litoralis DSM 5473]
Length = 383
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 94/307 (30%), Positives = 155/307 (50%), Gaps = 61/307 (19%)
Query: 18 QVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEAD 77
+++ Y+ +G++ I K L P IRVNTLK + QKL+ ++ G
Sbjct: 9 ELQRYYYNLFGSEA-EEIMKKLREPVEKYYIRVNTLKISR----QKLMEELRKEG----- 58
Query: 78 VASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVL 137
+ + P LE ++ + GP+ D YEP P +V+ ++ AE+V
Sbjct: 59 -------------LKPKRSPYLEEGIYFEREGPNFPD-DYEPKLP--KVVANKFAAESVY 102
Query: 138 RGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFER 197
+GAQ+Y PGV+ +++GD V + DP
Sbjct: 103 QGAQLYAPGVLKADKGIKEGDEVQIR---------------------------DP----- 130
Query: 198 SGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVL---EGEIFLQNLPSIVTA 254
GL +G G A MS + A+ GIAV++ F+LPS ++ +G + Q+LPS+V A
Sbjct: 131 KGLLVGIGIARMSAKEMVVATRGIAVEVTLPKFKLPSLNELKAYEKGYFYAQSLPSMVVA 190
Query: 255 HALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCI 314
H L+PQ+ + I+DM AAPGGKT+ IA LL + GE++A+D+S N++ ++K +G+K +
Sbjct: 191 HILEPQEEDLIIDMAAAPGGKTSHIAQLLENRGEIIAIDKSRNRLAKMEKELKRLGVKNV 250
Query: 315 TTYKLDA 321
++D+
Sbjct: 251 KLVQMDS 257
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 47/65 (72%), Gaps = 1/65 (1%)
Query: 427 DRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTIN 486
D++LLDAPC+ALG+RP+L+ T + + +YQR + A++ +R GGI+VYSTCT++
Sbjct: 268 DKILLDAPCTALGVRPKLWETR-TPKDIEATVRYQRHFINAAIKSLRKGGILVYSTCTLS 326
Query: 487 PGENE 491
ENE
Sbjct: 327 YEENE 331
>gi|195441370|ref|XP_002068484.1| GK20395 [Drosophila willistoni]
gi|194164569|gb|EDW79470.1| GK20395 [Drosophila willistoni]
Length = 457
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 98/338 (28%), Positives = 160/338 (47%), Gaps = 43/338 (12%)
Query: 7 YSYSPLLRWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLA 66
Y +P LR PQ+E+ ++ A + + L + + RVNTL D + KL
Sbjct: 3 YPKTPFLR-KPQLEKELLKINVA-ALPELLEWLCQAPSLTTYRVNTLTIDPKDYLHKL-- 58
Query: 67 IIQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFV-----KGSGPHTIDYGYEPDK 121
++ R +IP + ++ + + SG D +P
Sbjct: 59 ------------EQTLVDRFGQRAPKVFRIPDIPEMMCIDPFKDQSSGKGGKDDKCQPST 106
Query: 122 PPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITR 181
+E+IV C A+LRG+ +Y PGV+A + + + V V VE
Sbjct: 107 TRREIIVDTSCGAALLRGSHIYAPGVLAMETGTQLHECVDVYADVE-------------- 152
Query: 182 GTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFR----ASEGIAVDMHNRIFQLPSFYD 237
G +G+ T Y ++IG G M R ++ + GIA+ M + + +PS D
Sbjct: 153 GNCKRGTAT--RYESSEKIFIGIGIVKMQRYQLYNNQKDSPSGIAIQMQSTVSGVPSLGD 210
Query: 238 VLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHN 297
+ + LQNLPS+V L+PQ G+R+LDMCAAPG KT+ IA L+RD+G +VA+D S +
Sbjct: 211 LSDAYGLLQNLPSMVCVRVLNPQPGDRVLDMCAAPGNKTSHIAELMRDQGVLVALDNSKS 270
Query: 298 KVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEP 335
++ +Q KCI ++ D+ KA+ N+ +++P
Sbjct: 271 RIKAMQSRIGHY--KCIQSHVFDSTKALAEHNDQHNDP 306
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 54/80 (67%), Gaps = 2/80 (2%)
Query: 416 ENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEE--TIQSLRNHGKYQRRMFDQAVQLVR 473
N FS SFDR+LLDAPCS +G RP+L A + T + L+++ QRR+F QAV L+R
Sbjct: 303 HNDPPFSSASFDRILLDAPCSGIGNRPQLSCASQLKTAKDLKSYPNIQRRLFGQAVHLLR 362
Query: 474 PGGIIVYSTCTINPGENEAL 493
PGG +VYSTCT+ E E +
Sbjct: 363 PGGTLVYSTCTVTEAECEEI 382
>gi|340370362|ref|XP_003383715.1| PREDICTED: putative methyltransferase NSUN6-like [Amphimedon
queenslandica]
Length = 456
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 97/306 (31%), Positives = 156/306 (50%), Gaps = 37/306 (12%)
Query: 30 DHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASS-VKGRLQN 88
D + L P S +RVNTLKT I+ S DV + R +
Sbjct: 27 DVIENLCAELATPPLTSSVRVNTLKT----------PIVSEGVESVKDVLEKYCRERNCS 76
Query: 89 GTISESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVM 148
+IS S P L V+ ++GSGPH+ Y+ KE++V C ++VLRGA VY PG++
Sbjct: 77 TSISMSVHPLLPDVLLIEGSGPHSDLRLYD-----KEILVEMTCGQSVLRGADVYGPGIL 131
Query: 149 ACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAM 208
+ G+ V+V D G +R +++ ++ +YIG G A
Sbjct: 132 GAPKDLFIGESVSVYA-------DSG---NESRKGLVKK-------YDGPKVYIGNGKAC 174
Query: 209 MSRAGIF---RASEGIAVDMHNRIFQLPSFYDVLEGEI-FLQNLPSIVTAHALDPQKGER 264
+RA F S G+A+ M + ++ PS ++L ++ F Q+LPS+V +H L P + +R
Sbjct: 175 QTRADWFGPSAKSSGLAIRMTDPLYISPSLNEMLLNDVAFPQSLPSLVVSHVLKPTETDR 234
Query: 265 ILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324
+LDMCAAPGGK T +A+L+R++G ++A+DRS K+ ++ GL + + D+ A
Sbjct: 235 VLDMCAAPGGKATHLATLMRNKGVIIALDRSAGKMKSLKHNVKRFGLTNVHCFHHDSTAA 294
Query: 325 VRRKNE 330
K++
Sbjct: 295 CSSKSD 300
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 47/67 (70%), Gaps = 1/67 (1%)
Query: 426 FDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTI 485
FD+VLLDAPCS LG RPR F + + YQ+++ QAV L++PGG ++YSTC++
Sbjct: 319 FDKVLLDAPCSGLGQRPR-FNFSINLTDFTSLPLYQKKLLAQAVLLLKPGGKLLYSTCSL 377
Query: 486 NPGENEA 492
+P ENEA
Sbjct: 378 SPEENEA 384
>gi|195592453|ref|XP_002085949.1| GD15057 [Drosophila simulans]
gi|194197958|gb|EDX11534.1| GD15057 [Drosophila simulans]
Length = 440
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 85/207 (41%), Positives = 119/207 (57%), Gaps = 24/207 (11%)
Query: 124 KEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGT 183
KEV+V C A+LRGA +Y PGV+A S+ E+ ++V V LDG RGT
Sbjct: 102 KEVVVDTNCGAALLRGAHIYAPGVLAMESNTEREELVNVYA-----DLDGK----CKRGT 152
Query: 184 VLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASE----GIAVDMHNRIFQLPSFYDVL 239
V + Y + +++G G +M R +F +E G+AV+M + + +PS D+
Sbjct: 153 VKR-------YESPNKVFLGTGKVLMQRYQLFNNAEKPASGVAVEMRSNVSGVPSLGDLS 205
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
LQNLPSIV LDPQ GERILDMCAAPG KT+ IA L+ D G VVA+D S ++V
Sbjct: 206 NENGLLQNLPSIVCVRVLDPQPGERILDMCAAPGNKTSHIAELMGDRGSVVALDNSASRV 265
Query: 300 MDIQKLAAEMG-LKCITTYKLDALKAV 325
+ + ++G KCIT + ++ KAV
Sbjct: 266 ---RSMLPKLGHYKCITAHVFNSTKAV 289
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/75 (54%), Positives = 53/75 (70%)
Query: 421 FSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
F SFDR+LLDAPCS LG RP+L + + + L ++ QRR+F+QAVQL+RPGG +VY
Sbjct: 306 FPCESFDRILLDAPCSGLGNRPQLSCSIKQAKVLSSYPPIQRRLFEQAVQLLRPGGTLVY 365
Query: 481 STCTINPGENEALCA 495
STCT+ E E L A
Sbjct: 366 STCTVTEDECECLVA 380
>gi|281209306|gb|EFA83479.1| NOL1/NOP2/Sun family protein [Polysphondylium pallidum PN500]
Length = 435
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 87/307 (28%), Positives = 154/307 (50%), Gaps = 41/307 (13%)
Query: 21 EYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVAS 80
++ + Y + S I +A T +C+RVNTLK + + +I+KL+ + +
Sbjct: 32 QHLLNYYDEEQLSSIQRAQTTVQSLTCVRVNTLKISKNQLIEKLI---------DHFNNN 82
Query: 81 SVKGRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGA 140
+ G+ +S I + ++ + + E + E I+++ E
Sbjct: 83 NNNGQPSTYKLSFDDIISFDQLL-------NKDNNNSEDNHKNNEEILNKLNNE------ 129
Query: 141 QVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGL 200
PGV+ + KG+ V++ V + DG G + + +Y ER+ +
Sbjct: 130 ----PGVIGSDKTIVKGEKVSIFVDLMG---DGKKGFVVEQ-----------FYKERT-V 170
Query: 201 YIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQ 260
YIG G +++ R F + G+A++M RI++ P + +FLQ+LPSI+ LD +
Sbjct: 171 YIGNGISLLDRLDYFSGNGGVAIEMTERIYECPPLNALFPDLLFLQHLPSILAVFQLDVK 230
Query: 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
G+R+LDMC+APGGKTT IASL+ D G ++A+D++ K +QKL E+G+K +T D
Sbjct: 231 SGQRVLDMCSAPGGKTTLIASLMSDTGTIIAIDKNKKKQQTVQKLCLELGIKSVTCLSRD 290
Query: 321 ALKAVRR 327
+ K ++
Sbjct: 291 SAKLTKQ 297
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/71 (57%), Positives = 48/71 (67%), Gaps = 1/71 (1%)
Query: 421 FSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
F+ SFDR+LLD PCS LG RPR + I L N QRR+ D AV L++ GGI+VY
Sbjct: 304 FADESFDRILLDGPCSGLGSRPRFIEPSKLI-DLTNATDIQRRLIDNAVPLLKRGGILVY 362
Query: 481 STCTINPGENE 491
STCTINP ENE
Sbjct: 363 STCTINPEENE 373
>gi|403278299|ref|XP_003930754.1| PREDICTED: putative methyltransferase NSUN6 [Saimiri boliviensis
boliviensis]
Length = 444
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 94/295 (31%), Positives = 143/295 (48%), Gaps = 53/295 (17%)
Query: 8 SYSPLLRWNPQVEEYF---------IRAYGAD----HFSRISKALTRPSCYSCIRVNTLK 54
S P + P+VE Y + A+G + F + K L+ P ++ +RVNT
Sbjct: 2 SVFPKVSLRPEVENYLKEGFVNKEIVSAFGKEAAERKFETLLKHLSHPPSFTTVRVNTHL 61
Query: 55 TTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTID 114
+ V LL +Q +L +I Q P L+ V+ + GP
Sbjct: 62 ASVQHVKNLLLDELQK--------------QLNGLSIPILQHPDLQDVLLIPVVGPRK-- 105
Query: 115 YGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGG 174
K E IV +C AVLRGA VY PG+++ S ++ GDV++V +
Sbjct: 106 ---NIKKQQCEAIVGAQCGNAVLRGAHVYAPGIVSASKFMKAGDVISVYSDI-------- 154
Query: 175 WGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRAS---EGIAVDMHNRIFQ 231
+G +G++ F+ + +++G G + +SR IF +G+ + M ++
Sbjct: 155 ------KGKCKKGAKE----FDGTKVFLGNGISELSRKEIFNGLPELKGMGIRMTEPVYL 204
Query: 232 LPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDE 286
PSF VL +FLQNLPS V H L+PQ GE+ILD+CAAPGGKTT IA+L+ D+
Sbjct: 205 SPSFDSVLPRYLFLQNLPSAVVTHVLNPQPGEKILDLCAAPGGKTTHIAALMHDQ 259
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 52/71 (73%), Gaps = 1/71 (1%)
Query: 421 FSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
F P +FDR+LLDAPCS +G RP + A +++ + ++ QR++F AVQL++PGG++VY
Sbjct: 287 FLPETFDRILLDAPCSGMGQRPNM-ACTWSLKEVTSYQPLQRKLFTAAVQLLKPGGVLVY 345
Query: 481 STCTINPGENE 491
STCTI ENE
Sbjct: 346 STCTITLAENE 356
>gi|405960623|gb|EKC26529.1| Putative methyltransferase NSUN6 [Crassostrea gigas]
Length = 436
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 96/297 (32%), Positives = 140/297 (47%), Gaps = 57/297 (19%)
Query: 31 HFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGT 90
+F + + L P ++ +R+NT K + +++ AII V + K
Sbjct: 33 YFDVLQERLASPPMFTTLRLNTTKHSAEEI----HAIINQELQK---VYTDRKWDPPQSF 85
Query: 91 ISESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMAC 150
+ P L+ V+ ++ GP I K KEVI+ + C AV+RGA ++V G++
Sbjct: 86 LH----PELDDVLVIENRGPRPIK------KMEKEVIIDQSCGMAVMRGADIFVQGILGA 135
Query: 151 SSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMS 210
PT D T P R L++G G A
Sbjct: 136 ------------------PTRD-----------------TQPLSGPR--LHVGNGVAKFD 158
Query: 211 RAGIFRAS---EGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILD 267
R IF++ G+ + M +++ P D+ I QNLPSIV H LDP+ GERILD
Sbjct: 159 RDAIFKSQPPPSGVGILMTEPLYEAPCLSDLRPDLIMAQNLPSIVCTHVLDPKPGERILD 218
Query: 268 MCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324
MCAAPGGKTT IAS ++++GEV+A+DRS KV I+ L C+T + DALK
Sbjct: 219 MCAAPGGKTTHIASRMQNKGEVIAIDRSDVKVEKIRSNLERWALTCVTCHACDALKV 275
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/66 (59%), Positives = 50/66 (75%), Gaps = 1/66 (1%)
Query: 426 FDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTI 485
FDR+LLD PCSALG RP + A T+ SL+++ YQR+ +AVQL+RPGG++VYSTCTI
Sbjct: 294 FDRILLDVPCSALGQRPSIKNAM-TLNSLKSYPGYQRKFIRKAVQLLRPGGVLVYSTCTI 352
Query: 486 NPGENE 491
ENE
Sbjct: 353 TMEENE 358
>gi|242399817|ref|YP_002995242.1| Sun/NOL1/NOP nucleolar protein [Thermococcus sibiricus MM 739]
gi|242266211|gb|ACS90893.1| Sun/NOL1/NOP nucleolar protein [Thermococcus sibiricus MM 739]
Length = 383
Score = 135 bits (339), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 88/307 (28%), Positives = 152/307 (49%), Gaps = 61/307 (19%)
Query: 18 QVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEAD 77
++ Y+ +G D + + L P IRVNTLK + D +I+ L
Sbjct: 9 ELRRYYYGFFG-DEAEELMRTLREPVEKYYIRVNTLKISRDRLIEDL------------- 54
Query: 78 VASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVL 137
+ + + P LE ++ + GP+ +D Y PD P +V+ ++ +E+V
Sbjct: 55 ---------RKEGLEPKRSPYLEEGIYFEREGPNFLD-DYNPDLP--KVVANKFASESVY 102
Query: 138 RGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFER 197
+GAQ+Y PGV+ + +GD V + DP
Sbjct: 103 QGAQLYAPGVLKADKGIREGDQVQIR---------------------------DP----- 130
Query: 198 SGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVL---EGEIFLQNLPSIVTA 254
GL +G G A M+ + A+ G+AV++ F+LPS ++ +G ++Q LPS+V +
Sbjct: 131 KGLLVGIGIARMNAKEMIIATRGVAVEVTMPKFKLPSLNELESYEKGYFYVQTLPSMVAS 190
Query: 255 HALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCI 314
H LDP++G+ I+DM AAPGGKT+ IA LL + GE++A+D+S N++ ++ +G+K +
Sbjct: 191 HVLDPKEGDLIIDMTAAPGGKTSHIAQLLENRGEILALDKSKNRLSKMKNELERLGVKNV 250
Query: 315 TTYKLDA 321
++D+
Sbjct: 251 KLIQMDS 257
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 47/65 (72%), Gaps = 1/65 (1%)
Query: 427 DRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTIN 486
D++LLDAPC+ALG+RP+L+ T + + +YQ+ + A++ +R GG++VYSTCT++
Sbjct: 268 DKILLDAPCTALGVRPKLWETR-TPKDIDATARYQKHFINAAIKSLRKGGVLVYSTCTLS 326
Query: 487 PGENE 491
ENE
Sbjct: 327 YEENE 331
>gi|14591725|ref|NP_143813.1| hypothetical protein PH1991 [Pyrococcus horikoshii OT3]
gi|3258435|dbj|BAA31118.1| 389aa long hypothetical nucleolar protein [Pyrococcus horikoshii
OT3]
Length = 389
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 90/309 (29%), Positives = 153/309 (49%), Gaps = 60/309 (19%)
Query: 18 QVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEAD 77
++ EY+ +G + ++I K L P + IRVNTLK + + +I
Sbjct: 12 ELREYYKNLFGKEEANKIMKKLREPVEHYYIRVNTLKISREKLI---------------- 55
Query: 78 VASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVL 137
G L+ + + P L ++ GP+ D +EP P V+ ++ AE+V
Sbjct: 56 ------GELKKEGLKPLRSPYLPEGLYFVREGPNFSD-DFEPKLPV--VVANKYAAESVY 106
Query: 138 RGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFER 197
+GA +Y PGV+ ++++GD V + DP
Sbjct: 107 QGAMLYAPGVLKADKNIKEGDEVQIR---------------------------DP----- 134
Query: 198 SGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVL---EGEIFLQNLPSIVTA 254
GL +G G A M + A+ G+AV++ F+LPS ++ +G + Q LPS+VTA
Sbjct: 135 KGLLVGIGIARMDYKEMTEATRGLAVEVTLPKFKLPSLSELKAFEKGYFYPQGLPSMVTA 194
Query: 255 HALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCI 314
L+P++ + I+DM AAPGGKTT IA LL ++GE++A+D+S N++ +++ +G+K +
Sbjct: 195 RVLEPKEDDVIIDMAAAPGGKTTHIAQLLENKGEIIAIDKSKNRLRKMEENIKRLGVKNV 254
Query: 315 TTYKLDALK 323
++DA K
Sbjct: 255 KLVQMDARK 263
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 48/65 (73%), Gaps = 1/65 (1%)
Query: 427 DRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTIN 486
D++LLDAPC+ALG+RP+L+ E T++ + +YQR A++ +R GG++VYSTCT++
Sbjct: 272 DKILLDAPCTALGVRPKLWE-ERTLKHIEATARYQRAFIWAAIKSLRRGGVLVYSTCTLS 330
Query: 487 PGENE 491
ENE
Sbjct: 331 YEENE 335
>gi|18976541|ref|NP_577898.1| nol1-nop2-sun family nucleolar protein III [Pyrococcus furiosus DSM
3638]
gi|397652118|ref|YP_006492699.1| nol1-nop2-sun family nucleolar protein III [Pyrococcus furiosus
COM1]
gi|18892094|gb|AAL80293.1| putative nucleolar protein III (nol1-nop2-sun family) [Pyrococcus
furiosus DSM 3638]
gi|393189709|gb|AFN04407.1| nol1-nop2-sun family nucleolar protein III [Pyrococcus furiosus
COM1]
Length = 386
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 88/310 (28%), Positives = 157/310 (50%), Gaps = 61/310 (19%)
Query: 15 WNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSS 74
+ P+++EY+ + +G + I K L P + IRVNTLK + + +I++L
Sbjct: 7 FPPELQEYYRKLFGEEA-EEIMKRLREPVEHYYIRVNTLKISREKLIEEL---------- 55
Query: 75 EADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAE 134
+ + + P L+ ++ GP+ D Y P+ P V+ ++ AE
Sbjct: 56 ------------RKEGLRPRRSPYLQEALYFVREGPNFPD-DYNPNLP--TVVANKYAAE 100
Query: 135 AVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYY 194
+V +GA +Y PGV+ +++GD+V + DP
Sbjct: 101 SVYQGAMLYAPGVLKAEKGIKEGDMVQIR---------------------------DP-- 131
Query: 195 FERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVL---EGEIFLQNLPSI 251
GL +G G A M + A+ G+AV++ F+LPS ++ +G + Q+LPS+
Sbjct: 132 ---RGLLVGIGIAKMDYREMIEATRGLAVEVTLPKFKLPSLSELKSFEKGYFYPQSLPSM 188
Query: 252 VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL 311
VT+ L+P++ E I+DM AAPGGKT+ IA LL++ GE++A+D+S N++ +++ +G+
Sbjct: 189 VTSRVLEPKEEEIIIDMAAAPGGKTSHIAQLLQNRGEIIAIDKSKNRLKKMEENLKRLGV 248
Query: 312 KCITTYKLDA 321
K + ++DA
Sbjct: 249 KNVKLIQMDA 258
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
Query: 427 DRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTIN 486
D++LLDAPC+ALG+RP+L+ T + + +YQR A++ +R GGI+VYSTCT++
Sbjct: 269 DKILLDAPCTALGVRPKLWELR-TPKDIEATARYQRAFIWAAIKSLRKGGILVYSTCTLS 327
Query: 487 PGENE 491
ENE
Sbjct: 328 YEENE 332
>gi|14521973|ref|NP_127450.1| proliferating-cell nucleolar antigen P120, [Pyrococcus abyssi GE5]
gi|5459193|emb|CAB50679.1| Sun/NOL1/NOP nucleolar protein [Pyrococcus abyssi GE5]
gi|380742614|tpe|CCE71248.1| TPA: proliferating-cell nucleolar antigen P120, putative
[Pyrococcus abyssi GE5]
Length = 385
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 90/307 (29%), Positives = 152/307 (49%), Gaps = 61/307 (19%)
Query: 18 QVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEAD 77
+++EY+ R +G D I + L P + IRVNTLK + + +I++L
Sbjct: 10 ELQEYYKRLFG-DEAYEIMRKLREPVEHYYIRVNTLKVSREKLIEEL------------- 55
Query: 78 VASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVL 137
+ + + P L+ ++ GP+ D Y PD P VI ++ AE+V
Sbjct: 56 ---------RKEGLKPRRSPYLQEALYFVREGPNFSD-EYNPDLP--TVIANKYAAESVY 103
Query: 138 RGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFER 197
+GA +Y PGV+ +++GD V + DP
Sbjct: 104 QGAMLYAPGVLRADKGIKEGDEVQIR---------------------------DP----- 131
Query: 198 SGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVL---EGEIFLQNLPSIVTA 254
GL +G G A M + A+ G+AV++ F+LPS ++ +G + Q+LPS+V
Sbjct: 132 RGLLVGIGIARMDYKEMIEATRGLAVEVTLPKFKLPSLSELKSFEKGYFYPQSLPSMVAT 191
Query: 255 HALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCI 314
L+P++ E I+DM AAPGGKTT IA LL++ GE++A+D+S N++ +++ +G+K +
Sbjct: 192 RVLEPKEDELIIDMAAAPGGKTTHIAQLLQNRGEIIAIDKSKNRLKKMEENLRRLGVKNV 251
Query: 315 TTYKLDA 321
++DA
Sbjct: 252 KLIQMDA 258
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 47/65 (72%), Gaps = 1/65 (1%)
Query: 427 DRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTIN 486
D++LLDAPC+ALG+RP+L+ E T + + +YQR A++ +R GG++VYSTCT++
Sbjct: 269 DKILLDAPCTALGVRPKLWE-ERTPKHIEATARYQRAFIWAAIKSLRKGGVLVYSTCTLS 327
Query: 487 PGENE 491
ENE
Sbjct: 328 YEENE 332
>gi|195160569|ref|XP_002021148.1| GL24972 [Drosophila persimilis]
gi|194118261|gb|EDW40304.1| GL24972 [Drosophila persimilis]
Length = 438
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 89/233 (38%), Positives = 122/233 (52%), Gaps = 28/233 (12%)
Query: 119 PDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLG 178
PD KEVIV C A+LRGA +Y PGV+A S+ + + V V L G G
Sbjct: 99 PDPTLKEVIVDTSCGAALLRGAHIYAPGVLAMESNTQLQECVNVYA-----DLAGKCKRG 153
Query: 179 ITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIF----RASEGIAVDMHNRIFQLPS 234
+T Y +Y+G G +M R ++ A GIAV+M + + +PS
Sbjct: 154 MTT-----------RYENSEKVYVGVGKVLMQRYQLYNDKNEAPTGIAVEMQSNVSGVPS 202
Query: 235 FYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDR 294
D+ + LQNLPSIV LDPQ GERILDMCAAPG KTT IA L+ D+G VVA+D
Sbjct: 203 LGDLSSADALLQNLPSIVCVRVLDPQPGERILDMCAAPGNKTTHIAELMGDQGCVVALDN 262
Query: 295 SHNKVMDIQKLAAEMG--LKCITTYKLDALKAVRRKNESN---DEPNMCNSKD 342
S ++V + + ++G + I + D+ KAV ++S+ P C S D
Sbjct: 263 SASRV---RGMLGKLGNNYRSIQAHVFDSTKAVAASSDSSCPAAPPFPCASFD 312
>gi|156546966|ref|XP_001599497.1| PREDICTED: putative methyltransferase NSUN6-like [Nasonia
vitripennis]
Length = 459
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/238 (34%), Positives = 126/238 (52%), Gaps = 25/238 (10%)
Query: 94 SQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSH 153
S P +E ++ V G +++ E + EVIV C AVLRGA +Y PGV+
Sbjct: 91 STFPCVEELIIVNGWD-KSVELNLE--RQQYEVIVDAACGAAVLRGAHIYAPGVLGMPRG 147
Query: 154 VEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAG 213
++ GD+V+V +EQ +G V + Y +++ L++G G ++R
Sbjct: 148 LKVGDIVSVYADLEQ---------ACKKGLVTE-------YDKKNKLFVGNGIVQLTREQ 191
Query: 214 IF----RASEGIAVDMHNRIFQLPSFYDVL--EGEIFLQNLPSIVTAHALDPQKGERILD 267
IF + GIAV M + I +P D + +G + LQNLPSI+ + LDPQ GE +LD
Sbjct: 192 IFGHETEHTSGIAVTMTDIISHIPQINDNILPKGYVLLQNLPSILCSRVLDPQPGETVLD 251
Query: 268 MCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAV 325
MCAAPG KTT IA+L+ ++G VVA+++ NK+ + + Y D+ KAV
Sbjct: 252 MCAAPGNKTTHIAALMENKGVVVAIEKIKNKLERLNSNIENFSATIVKAYCFDSTKAV 309
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/75 (54%), Positives = 53/75 (70%), Gaps = 1/75 (1%)
Query: 421 FSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
+S SFDRVLLD PCSALG RP++ ++ LR++ QR++F AVQL+RPGG +VY
Sbjct: 323 YSKESFDRVLLDGPCSALGQRPQI-RNPISVSQLRSYVPLQRKLFTSAVQLLRPGGTLVY 381
Query: 481 STCTINPGENEALCA 495
STCTI ENE + A
Sbjct: 382 STCTITIAENEGIIA 396
>gi|195348858|ref|XP_002040964.1| GM22476 [Drosophila sechellia]
gi|194122474|gb|EDW44517.1| GM22476 [Drosophila sechellia]
Length = 440
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 82/205 (40%), Positives = 117/205 (57%), Gaps = 24/205 (11%)
Query: 124 KEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGT 183
KEV+V C A+LRGA +Y PGV+A S+ E+ ++V V LDG RGT
Sbjct: 102 KEVVVDTNCGAALLRGAHIYAPGVLAMESNTEREELVNVYA-----DLDGK----CKRGT 152
Query: 184 VLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASE----GIAVDMHNRIFQLPSFYDVL 239
V + Y + +++G G +M R +F +E G+AV+M + + +PS D+
Sbjct: 153 VKR-------YESPNKVFLGTGKVLMQRYQLFNNAEKPASGVAVEMQSNVSGVPSLGDLS 205
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+ LQNLPSIV LDPQ ERILDMCAAPG KT+ IA L+ D G VVA+D S ++V
Sbjct: 206 SEDGLLQNLPSIVCVRVLDPQPFERILDMCAAPGNKTSHIAELMGDRGSVVALDNSASRV 265
Query: 300 MDIQKLAAEMG-LKCITTYKLDALK 323
+ + ++G KCIT + ++ K
Sbjct: 266 ---RSMLPKLGHYKCITAHVFNSTK 287
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/75 (54%), Positives = 54/75 (72%)
Query: 421 FSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
F SFDR+LLDAPCS LG RP+L + + + L ++ QR++F+QAVQL+RPGGI+VY
Sbjct: 306 FPCESFDRILLDAPCSGLGNRPQLSCSIKQAKVLSSYPHIQRQLFEQAVQLLRPGGILVY 365
Query: 481 STCTINPGENEALCA 495
STCT+ E E L A
Sbjct: 366 STCTVTEDECECLVA 380
>gi|40714555|gb|AAR88536.1| RH33950p [Drosophila melanogaster]
Length = 450
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 82/207 (39%), Positives = 119/207 (57%), Gaps = 24/207 (11%)
Query: 124 KEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGT 183
KEV+V C A+LRGA +Y PGV+A S+ E+ ++V V LDG RGT
Sbjct: 102 KEVVVDTNCGAALLRGAHIYAPGVLAMESNTEREELVNVYA-----DLDGK----CKRGT 152
Query: 184 VLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASE----GIAVDMHNRIFQLPSFYDVL 239
V + Y + +++G G +M R +F +E G+AV+M + + +P+ D+
Sbjct: 153 VKR-------YESPNKVFLGTGKVLMQRYQLFNNAEKPASGVAVEMQSNVSGVPTLGDLS 205
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+ LQNLPSIV LDPQ GERILDMCAAPG KT+ IA L+ D G VVA+D S ++V
Sbjct: 206 SEDGLLQNLPSIVCVRVLDPQPGERILDMCAAPGNKTSHIAELMGDRGSVVALDNSASRV 265
Query: 300 MDIQKLAAEMG-LKCITTYKLDALKAV 325
+ + ++G K IT + ++ +AV
Sbjct: 266 ---RSMLPKLGHYKSITAHVFNSTEAV 289
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 43/75 (57%), Positives = 55/75 (73%)
Query: 421 FSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
F SFDR+LLDAPCS LG RP+L + + ++ L ++ QRR+F+QAVQLVRPGGI+VY
Sbjct: 306 FPCESFDRILLDAPCSGLGNRPQLSCSIKQVKVLSSYPHIQRRLFEQAVQLVRPGGILVY 365
Query: 481 STCTINPGENEALCA 495
STCT+ E E L A
Sbjct: 366 STCTVTEDECECLVA 380
>gi|315231566|ref|YP_004072002.1| ribosomal RNA small subunit methyltransferase B [Thermococcus
barophilus MP]
gi|315184594|gb|ADT84779.1| ribosomal RNA small subunit methyltransferase B [Thermococcus
barophilus MP]
Length = 384
Score = 132 bits (331), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 88/307 (28%), Positives = 153/307 (49%), Gaps = 61/307 (19%)
Query: 18 QVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEAD 77
+++EY+ + +G + I + L P IRVNTLK + D +I +L
Sbjct: 9 ELQEYYRKLFGEEA-EIIMQKLREPVEKYYIRVNTLKISRDKLIDEL------------- 54
Query: 78 VASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVL 137
+ + + P L+ ++ GP+ D Y P P V+ ++ AE+V
Sbjct: 55 ---------KREGLKPKRSPYLDEGIYFDREGPNFPD-DYNPRLP--TVVANKYAAESVY 102
Query: 138 RGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFER 197
+GA +Y PGV+ +++GD V + DP
Sbjct: 103 QGAMLYAPGVLKADKSIKEGDEVQIR---------------------------DP----- 130
Query: 198 SGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVL---EGEIFLQNLPSIVTA 254
GL +G GTA M+ + +A+ GIAV++ F+LPS ++ +G + Q+LPS+VTA
Sbjct: 131 KGLLVGIGTAKMNAKEMIKATRGIAVEVTLPKFKLPSLSELKSFEKGYFYPQSLPSMVTA 190
Query: 255 HALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCI 314
L+P +G+ I+DM AAPGGKTT +A L+++ GE++A+D+S N++ +++ +G+K +
Sbjct: 191 RILEPNEGDLIIDMAAAPGGKTTHLAQLMQNRGEIIAIDKSKNRLRKMEETLKRLGVKNV 250
Query: 315 TTYKLDA 321
+D+
Sbjct: 251 KLVHMDS 257
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 48/65 (73%), Gaps = 1/65 (1%)
Query: 427 DRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTIN 486
D++LLDAPC+ALG+RP+L+ + T + + +YQR + A++ +R GGI+VYSTCT++
Sbjct: 268 DKILLDAPCTALGVRPKLWESR-TPKDIIATARYQRHFINAAIKSLRKGGILVYSTCTLS 326
Query: 487 PGENE 491
ENE
Sbjct: 327 YEENE 331
>gi|24668781|ref|NP_730761.1| CG11109, isoform B [Drosophila melanogaster]
gi|23094335|gb|AAN12208.1| CG11109, isoform B [Drosophila melanogaster]
gi|209417956|gb|ACI46516.1| FI01826p [Drosophila melanogaster]
Length = 439
Score = 131 bits (330), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 82/207 (39%), Positives = 119/207 (57%), Gaps = 24/207 (11%)
Query: 124 KEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGT 183
KEV+V C A+LRGA +Y PGV+A S+ E+ ++V V LDG RGT
Sbjct: 102 KEVVVDTNCGAALLRGAHIYAPGVLAMESNTEREELVNVYA-----DLDGK----CKRGT 152
Query: 184 VLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASE----GIAVDMHNRIFQLPSFYDVL 239
V + Y + +++G G +M R +F +E G+AV+M + + +P+ D+
Sbjct: 153 VKR-------YESPNKVFLGTGKVLMQRYQLFNNAEKPASGVAVEMQSNVSGVPTLGDLS 205
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+ LQNLPSIV LDPQ GERILDMCAAPG KT+ IA L+ D G VVA+D S ++V
Sbjct: 206 SEDGLLQNLPSIVCVRVLDPQPGERILDMCAAPGNKTSHIAELMGDRGSVVALDNSASRV 265
Query: 300 MDIQKLAAEMG-LKCITTYKLDALKAV 325
+ + ++G K IT + ++ +AV
Sbjct: 266 ---RSMLPKLGHYKSITAHVFNSTEAV 289
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 43/75 (57%), Positives = 55/75 (73%)
Query: 421 FSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
F SFDR+LLDAPCS LG RP+L + + ++ L ++ QRR+F+QAVQLVRPGGI+VY
Sbjct: 306 FPCESFDRILLDAPCSGLGNRPQLSCSIKQVKVLSSYPHIQRRLFEQAVQLVRPGGILVY 365
Query: 481 STCTINPGENEALCA 495
STCT+ E E L A
Sbjct: 366 STCTVTEDECECLVA 380
>gi|21356513|ref|NP_649425.1| CG11109, isoform A [Drosophila melanogaster]
gi|7296593|gb|AAF51875.1| CG11109, isoform A [Drosophila melanogaster]
gi|16768466|gb|AAL28452.1| GM05221p [Drosophila melanogaster]
gi|220943156|gb|ACL84121.1| CG11109-PA [synthetic construct]
gi|220953252|gb|ACL89169.1| CG11109-PA [synthetic construct]
Length = 358
Score = 131 bits (330), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 83/211 (39%), Positives = 120/211 (56%), Gaps = 24/211 (11%)
Query: 120 DKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGI 179
D KEV+V C A+LRGA +Y PGV+A S+ E+ ++V V LDG
Sbjct: 17 DSELKEVVVDTNCGAALLRGAHIYAPGVLAMESNTEREELVNVYA-----DLDGK----C 67
Query: 180 TRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASE----GIAVDMHNRIFQLPSF 235
RGTV + Y + +++G G +M R +F +E G+AV+M + + +P+
Sbjct: 68 KRGTVKR-------YESPNKVFLGTGKVLMQRYQLFNNAEKPASGVAVEMQSNVSGVPTL 120
Query: 236 YDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRS 295
D+ + LQNLPSIV LDPQ GERILDMCAAPG KT+ IA L+ D G VVA+D S
Sbjct: 121 GDLSSEDGLLQNLPSIVCVRVLDPQPGERILDMCAAPGNKTSHIAELMGDRGSVVALDNS 180
Query: 296 HNKVMDIQKLAAEMG-LKCITTYKLDALKAV 325
++V + + ++G K IT + ++ +AV
Sbjct: 181 ASRV---RSMLPKLGHYKSITAHVFNSTEAV 208
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 43/75 (57%), Positives = 55/75 (73%)
Query: 421 FSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
F SFDR+LLDAPCS LG RP+L + + ++ L ++ QRR+F+QAVQLVRPGGI+VY
Sbjct: 225 FPCESFDRILLDAPCSGLGNRPQLSCSIKQVKVLSSYPHIQRRLFEQAVQLVRPGGILVY 284
Query: 481 STCTINPGENEALCA 495
STCT+ E E L A
Sbjct: 285 STCTVTEDECECLVA 299
>gi|223477542|ref|YP_002581976.1| tRNA/RNA cytosine-C5-methylase [Thermococcus sp. AM4]
gi|214032768|gb|EEB73597.1| tRNA/RNA cytosine-C5-methylase [Thermococcus sp. AM4]
Length = 389
Score = 131 bits (330), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 92/309 (29%), Positives = 155/309 (50%), Gaps = 61/309 (19%)
Query: 18 QVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEAD 77
+++EY+ + +G + I +L P IRVNTLKT+ + KL+ I++ G
Sbjct: 16 ELQEYYRKLFGKEA-EGIMASLRTPVKKYYIRVNTLKTSRE----KLMRILRREG----- 65
Query: 78 VASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVL 137
+ + P L+ ++ + GP+ D YEP K V ++ +E+V
Sbjct: 66 -------------LKPKRSPYLKEGIYFEREGPNFPD-DYEPGL--KVVRANKFASESVY 109
Query: 138 RGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFER 197
+GA +Y PGV+ ++ GD V + DP
Sbjct: 110 QGANLYAPGVLQADRSIKPGDEVEIR---------------------------DP----- 137
Query: 198 SGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDV---LEGEIFLQNLPSIVTA 254
GL +G G A MS + ++ G+AV++ F+LPS ++ EG + Q+LPS+V A
Sbjct: 138 RGLLVGIGIAKMSAKEMIVSTRGLAVEVTTPKFKLPSLSELESFKEGLFYAQSLPSMVVA 197
Query: 255 HALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCI 314
H L+P + E I+DM AAPGGKT+ IA LL++ GE++A+D+S N++ +++ +G+K +
Sbjct: 198 HVLEPSEEELIIDMAAAPGGKTSHIAQLLQNRGEIIAIDKSRNRLRKMEEELKRLGVKNV 257
Query: 315 TTYKLDALK 323
++DA K
Sbjct: 258 KLIRMDARK 266
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 49/66 (74%), Gaps = 1/66 (1%)
Query: 427 DRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTIN 486
D++LLDAPC+ALG+RP+L+ + T + + +YQR A++ +RPGG++VYSTCT++
Sbjct: 275 DKILLDAPCTALGIRPKLWESR-TPRDIIATARYQRAFIWAAIKSLRPGGVLVYSTCTLS 333
Query: 487 PGENEA 492
ENEA
Sbjct: 334 YEENEA 339
>gi|195127777|ref|XP_002008344.1| GI13435 [Drosophila mojavensis]
gi|193919953|gb|EDW18820.1| GI13435 [Drosophila mojavensis]
Length = 443
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 96/281 (34%), Positives = 139/281 (49%), Gaps = 41/281 (14%)
Query: 49 RVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFVKGS 108
R+NTL+T+ D KL + S A + +K +IP + + +
Sbjct: 44 RINTLRTSVADYKLKLETKLSALYGSSAPLVYGLK-----------EIPEMLCISPLDT- 91
Query: 109 GPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQ 168
T D Y D KE+IV C AVLRGA +Y PGV+A S + ++V V +
Sbjct: 92 ---TTDNKY--DDCRKELIVDTSCGAAVLRGAHIYAPGVLAMESGTQLHELVNVFADLP- 145
Query: 169 PTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASE----GIAVD 224
G +G+ T Y ++IG G +M R ++ E GIAV
Sbjct: 146 -------------GKCKRGTATR--YDCNEKIFIGVGEVLMQRHQLYNNKEQPASGIAVR 190
Query: 225 MHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLR 284
M + +P+ D+ + + LQNLPS+V LDPQ GERILDMCAAPG KTT +A L+
Sbjct: 191 MQTNVSGVPTLGDLSDEDALLQNLPSMVCVRVLDPQPGERILDMCAAPGNKTTHMAELMC 250
Query: 285 DEGEVVAVDRSHNKVMDI-QKLAAEMGLKCITTYKLDALKA 324
+ G ++A+D S ++V + +KLA CIT ++ DA KA
Sbjct: 251 NRGTIIALDNSASRVRSMTEKLA---NYTCITAHQFDATKA 288
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 50/73 (68%)
Query: 421 FSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
F+ SFDR+LLDAPCS LG RP+L + + L+++ QR + QAV L+RPGGI+VY
Sbjct: 302 FASGSFDRILLDAPCSGLGNRPQLCCNIKQPKVLQSYPHIQRNILSQAVPLLRPGGILVY 361
Query: 481 STCTINPGENEAL 493
STCT+ E E +
Sbjct: 362 STCTVTEAECEEI 374
>gi|389851763|ref|YP_006353997.1| nol1-nop2-sun family nucleolar protein III [Pyrococcus sp. ST04]
gi|388249069|gb|AFK21922.1| nol1-nop2-sun family nucleolar protein III [Pyrococcus sp. ST04]
Length = 385
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 89/307 (28%), Positives = 153/307 (49%), Gaps = 61/307 (19%)
Query: 18 QVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEAD 77
++++Y+ R +G + I K L P + IRVNTLK + D +I++L
Sbjct: 10 ELQDYYRRLFGPEA-DEIMKKLREPVEHYYIRVNTLKISRDKLIEEL------------- 55
Query: 78 VASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVL 137
+ + + P L ++ GP+ D Y P+ P V V++ AE+V
Sbjct: 56 ---------KKEGLRPRRSPYLSEGLYFVREGPNFPD-DYNPELP--TVTVNKFAAESVY 103
Query: 138 RGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFER 197
+GA +Y PGV+ +++GD V + DP
Sbjct: 104 QGAMLYAPGVLKADKGIKEGDEVQIR---------------------------DP----- 131
Query: 198 SGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVL---EGEIFLQNLPSIVTA 254
GL +G G A M + A+ G+AV++ F+LPS ++ +G + Q+LPS++TA
Sbjct: 132 RGLLVGIGIARMDYREMIEATRGLAVEVTLPKFKLPSLSELKSFEKGYFYPQSLPSMITA 191
Query: 255 HALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCI 314
LDP++ + I+DM AAPGGKTT +A LL++ GE++A+D+S N++ +++ +G+K +
Sbjct: 192 RVLDPKEEDVIIDMAAAPGGKTTHMAQLLQNRGEIIAIDKSKNRLKKMEENLKRLGVKNV 251
Query: 315 TTYKLDA 321
++DA
Sbjct: 252 KLVQMDA 258
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 47/65 (72%), Gaps = 1/65 (1%)
Query: 427 DRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTIN 486
D++LLDAPC+ALG+RP+L+ E T + + +YQR A++ +R GGI+VYSTCT++
Sbjct: 269 DKILLDAPCTALGVRPKLWE-ERTPKHIEATARYQRAFIWAAIKSLRKGGILVYSTCTLS 327
Query: 487 PGENE 491
ENE
Sbjct: 328 YEENE 332
>gi|355782677|gb|EHH64598.1| Putative methyltransferase NSUN6 [Macaca fascicularis]
Length = 416
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 92/295 (31%), Positives = 142/295 (48%), Gaps = 56/295 (18%)
Query: 8 SYSPLLRWNPQVEEYF---------IRAYGADH----FSRISKALTRPSCYSCIRVNTLK 54
S P + P+VE Y + A G F + K L+ P ++ +RVNT
Sbjct: 2 SIFPKISLRPEVENYLKESFVNKEIVTALGKQEAERKFETLLKHLSHPPSFTTVRVNTHL 61
Query: 55 TTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTID 114
+ V LL +Q + ++ Q P L+ V+ + GP I
Sbjct: 62 ASVQHVKNLLLDELQK--------------QFNGLSVPILQHPDLQDVLLIPVIGPKNIK 107
Query: 115 YGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGG 174
K E IV +C AVLRGA VY PG+++ S ++ GDV++V +
Sbjct: 108 ------KQQCEAIVGAQCGNAVLRGAHVYAPGIVSAS--MKAGDVISVYSDI-------- 151
Query: 175 WGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRAS---EGIAVDMHNRIFQ 231
+G +G++ F+ + +++G G + +SR IF +G+ + M ++
Sbjct: 152 ------KGKCKKGARE----FDGTKVFLGNGISELSRKEIFNGLPELKGMGIRMTEPVYL 201
Query: 232 LPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDE 286
PSF +VL +FLQNLPS + H L+PQ GE+ILD+CAAPGGKTT IA+L+ D+
Sbjct: 202 SPSFDNVLPRYLFLQNLPSALVTHVLNPQPGEKILDLCAAPGGKTTHIAALMHDQ 256
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 51/71 (71%), Gaps = 2/71 (2%)
Query: 421 FSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
F P SFDR+LLDAPCS +G RP + A +++ L ++ QR++F AVQL++P G++VY
Sbjct: 260 FLPESFDRILLDAPCSGMGQRPNM-ACTWSLKELASYQPLQRKLFT-AVQLLKPEGVLVY 317
Query: 481 STCTINPGENE 491
STCTI ENE
Sbjct: 318 STCTITLAENE 328
>gi|240102348|ref|YP_002958656.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus gammatolerans EJ3]
gi|239909901|gb|ACS32792.1| tRNA/rRNA cytosine-C5-methylase, putative [Thermococcus
gammatolerans EJ3]
Length = 389
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 93/309 (30%), Positives = 152/309 (49%), Gaps = 61/309 (19%)
Query: 18 QVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEAD 77
++ EY+ +G++ I +L P IRVNTLKT+ D KL+ I++ G
Sbjct: 16 ELREYYRELFGSEA-EEIMASLRTPVEKYYIRVNTLKTSRD----KLMRILRREG----- 65
Query: 78 VASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVL 137
+ + P L+ ++ + GP+ D YEP K V ++ +E+V
Sbjct: 66 -------------LKPKRSPYLKEGIYFEREGPNFPD-DYEPGV--KVVRANKFASESVY 109
Query: 138 RGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFER 197
+GA +Y PGV+ + GD V + DP
Sbjct: 110 QGANLYAPGVLQADKSIRPGDEVEIR---------------------------DP----- 137
Query: 198 SGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVL---EGEIFLQNLPSIVTA 254
GL +G G A MS + + G+AV++ F+LPS ++ EG + Q+LPS+V A
Sbjct: 138 RGLLVGIGIAKMSAKEMVVSMRGLAVEVTLPKFRLPSLSELQSFKEGLFYAQSLPSMVVA 197
Query: 255 HALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCI 314
H L+P + E I+DM AAPGGKT+ IA LL++ GE++A+D+S N++ +++ +G+K +
Sbjct: 198 HVLEPSEEELIIDMAAAPGGKTSHIAQLLQNRGEIIAIDKSRNRLRKMEEELKRLGVKNV 257
Query: 315 TTYKLDALK 323
++DA K
Sbjct: 258 RLIRMDARK 266
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 48/66 (72%), Gaps = 1/66 (1%)
Query: 427 DRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTIN 486
D++LLDAPC+ALG+RP+L+ + T + + +YQR A++ +R GG++VYSTCT++
Sbjct: 275 DKILLDAPCTALGIRPKLWESR-TPKDIIATARYQRAFIWAAIKSLRRGGVLVYSTCTLS 333
Query: 487 PGENEA 492
ENEA
Sbjct: 334 YEENEA 339
>gi|341582537|ref|YP_004763029.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus sp. 4557]
gi|340810195|gb|AEK73352.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus sp. 4557]
Length = 383
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 94/310 (30%), Positives = 154/310 (49%), Gaps = 63/310 (20%)
Query: 18 QVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEAD 77
++ EY+ R +G + I +L P IRVNTLKT+ KL+AI++ G
Sbjct: 10 ELREYYRRLFG-EEAEDIMASLRTPVEKYYIRVNTLKTSRG----KLMAILRKEG----- 59
Query: 78 VASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCA-EAV 136
+ + P L+ ++ + GP+ D YEP P V+ + K A E+V
Sbjct: 60 -------------LKPKRSPYLKEGIYFEREGPNFPD-DYEPGLP---VVRANKFASESV 102
Query: 137 LRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFE 196
+GA +Y PGV+ ++ GD V + DP
Sbjct: 103 YQGAMLYAPGVLQADKKIKPGDEVEIR---------------------------DP---- 131
Query: 197 RSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDV---LEGEIFLQNLPSIVT 253
GL +G G A MS + ++ G+AV++ F+LPS ++ EG + Q+LPS+V
Sbjct: 132 -RGLLVGIGVARMSAKEMIVSTRGLAVEVTLPKFKLPSLSELESFKEGLFYAQSLPSMVV 190
Query: 254 AHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC 313
AH L+P + E I+DM AAPGGKT+ IA L+++ GE++A+D+S N++ +++ +G+K
Sbjct: 191 AHVLEPSEEELIVDMAAAPGGKTSHIAQLMQNRGEIIAMDKSKNRLKKMEEELKRLGVKN 250
Query: 314 ITTYKLDALK 323
+ +D+ K
Sbjct: 251 VKPIHMDSRK 260
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 49/66 (74%), Gaps = 1/66 (1%)
Query: 427 DRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTIN 486
DR+LLDAPC+ALG+RP+L+ + T + + +YQR + A++ +R GG++VYSTCT++
Sbjct: 269 DRILLDAPCTALGIRPKLWESR-TPKDIEATARYQRHFINAAIKSLRRGGVLVYSTCTLS 327
Query: 487 PGENEA 492
ENEA
Sbjct: 328 YEENEA 333
>gi|195496828|ref|XP_002095858.1| GE22645 [Drosophila yakuba]
gi|194181959|gb|EDW95570.1| GE22645 [Drosophila yakuba]
Length = 440
Score = 128 bits (321), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 87/238 (36%), Positives = 122/238 (51%), Gaps = 28/238 (11%)
Query: 124 KEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGT 183
KE++V C A+LRGA +Y PGV+A + E+ ++V V LDG RG
Sbjct: 102 KEIMVDSSCGAALLRGAHIYAPGVLAMECNTEREELVNVYA-----DLDGK----CKRGA 152
Query: 184 VLQGSQTDPYYFERSGLYIGQGTAMMSRAGIF----RASEGIAVDMHNRIFQLPSFYDVL 239
V + Y +++G G +M R +F + + G+AV+M + + +PS D+
Sbjct: 153 VKR-------YESPHKVFLGTGKVLMQRYQLFNNADKPATGVAVEMQSTVSGVPSLGDLS 205
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+ LQNLPSIV LDPQ GERILDMCAAPG KT+ IA L+ D G VVA+D S ++V
Sbjct: 206 SEDGLLQNLPSIVCVRVLDPQPGERILDMCAAPGNKTSHIAELIGDGGSVVALDNSASRV 265
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRRK------NESNDEPNMCNSKDNNYITSQTS 351
+ L K IT + D+ KA+ + E P C S D I + S
Sbjct: 266 RSM--LLKLKHYKSITAHVFDSTKALAPEAPSAPFGEFTAPPFPCASFDRILIDAPCS 321
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 53/75 (70%)
Query: 421 FSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
F SFDR+L+DAPCS LG RP+L + + + L ++ QRR+F+QAV L+RPGGI+VY
Sbjct: 306 FPCASFDRILIDAPCSGLGNRPQLSCSIKQAKVLSSYPNIQRRLFEQAVPLLRPGGILVY 365
Query: 481 STCTINPGENEALCA 495
STCT+ E E + A
Sbjct: 366 STCTVTEDECECIVA 380
>gi|212224781|ref|YP_002308017.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus onnurineus NA1]
gi|212009738|gb|ACJ17120.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus onnurineus NA1]
Length = 383
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 94/310 (30%), Positives = 153/310 (49%), Gaps = 63/310 (20%)
Query: 18 QVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEAD 77
+++EY+ R +G + I +L P IRVNTLKT+ KL+ I++ G
Sbjct: 10 ELKEYYRRLFG-EEAEEIMASLRTPVEKYYIRVNTLKTSRS----KLMRILRKEG----- 59
Query: 78 VASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCA-EAV 136
+ + P LE ++ + GP+ D YEP P V+ + K A E+V
Sbjct: 60 -------------LKPKRSPYLEEGIYFEREGPNFPD-DYEPGLP---VVRANKFASESV 102
Query: 137 LRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFE 196
+GA +Y PGV+ ++ GD V + DP
Sbjct: 103 YQGAMLYAPGVLQADKKIKPGDEVEIR---------------------------DP---- 131
Query: 197 RSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDV---LEGEIFLQNLPSIVT 253
GL +G G A MS + ++ GIAV++ F+LPS ++ EG + Q+LPS+V
Sbjct: 132 -RGLLVGIGIARMSAKEMIVSTRGIAVEVTLPKFRLPSLSELESFKEGLFYAQSLPSMVV 190
Query: 254 AHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC 313
A L+P + E I+DM AAPGGKT+ IA L+++ GE++A+D+S N++ +++ +G+K
Sbjct: 191 ARILEPSEEELIIDMAAAPGGKTSHIAQLMQNRGEIIAIDKSKNRLRKMEEELKRLGVKN 250
Query: 314 ITTYKLDALK 323
+ +D+ K
Sbjct: 251 VKLIHMDSRK 260
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 49/66 (74%), Gaps = 1/66 (1%)
Query: 427 DRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTIN 486
D++LLDAPC+ALG+RP+L+ + T + + +YQR + A++ +R GG++VYSTCT++
Sbjct: 269 DKILLDAPCTALGIRPKLWESR-TPKDIEATARYQRHFINAAIKSLRKGGVLVYSTCTLS 327
Query: 487 PGENEA 492
ENEA
Sbjct: 328 YEENEA 333
>gi|194876441|ref|XP_001973776.1| GG16283 [Drosophila erecta]
gi|190655559|gb|EDV52802.1| GG16283 [Drosophila erecta]
Length = 439
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 83/207 (40%), Positives = 117/207 (56%), Gaps = 25/207 (12%)
Query: 124 KEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGT 183
KE++V C A+LRGA +Y PGV+A S E G++V V LDG RG
Sbjct: 102 KEIMVDTNCGAALLRGAHIYAPGVLAMESCTE-GELVNVYA-----DLDGK----CKRGA 151
Query: 184 VLQGSQTDPYYFERSGLYIGQGTAMMSRAGIF----RASEGIAVDMHNRIFQLPSFYDVL 239
V + Y + +++G G +M R +F + + G+AV+M + + +PS D+
Sbjct: 152 VKR-------YESPNKVFLGTGKVLMQRYQLFNNADKPASGVAVEMQSNVSGVPSLGDLS 204
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+ LQNLPSIV LDPQ GERILDMCAAPG KT+ IA L+ D G VVA+D S ++V
Sbjct: 205 CEDGLLQNLPSIVCVRVLDPQPGERILDMCAAPGNKTSHIAELMGDWGSVVALDNSASRV 264
Query: 300 MDIQKLAAEMG-LKCITTYKLDALKAV 325
+ + ++G K I T+ D+ KAV
Sbjct: 265 ---RSMLPKLGNYKSIKTHVFDSTKAV 288
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 54/75 (72%)
Query: 421 FSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
F SFDR+LLDAPCS LG RP+L + + + L ++ QRR+F+QAVQL+RPGGI+VY
Sbjct: 305 FPCASFDRILLDAPCSGLGNRPQLSCSIKQAKILSSYPNIQRRLFEQAVQLLRPGGILVY 364
Query: 481 STCTINPGENEALCA 495
STCT+ E E L A
Sbjct: 365 STCTVTEDECECLVA 379
>gi|337285025|ref|YP_004624499.1| nol1-nop2-sun family nucleolar protein III [Pyrococcus yayanosii
CH1]
gi|334900959|gb|AEH25227.1| nol1-nop2-sun family nucleolar protein III [Pyrococcus yayanosii
CH1]
Length = 384
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 87/307 (28%), Positives = 154/307 (50%), Gaps = 61/307 (19%)
Query: 18 QVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEAD 77
+++ Y+ +GA+ I +AL P + IRVNTLK + + ++++L
Sbjct: 9 ELQRYYRGLFGAEA-DEIMRALREPVEHYYIRVNTLKISREKLMEEL------------- 54
Query: 78 VASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVL 137
+ +S + P L ++ + GP+ D Y+P+ P V+V++ AE+V
Sbjct: 55 ---------KREGLSPKRSPYLPEGLYFEREGPNFPD-DYDPELP--TVVVNKYAAESVY 102
Query: 138 RGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFER 197
+GA +Y PGV+ +++GD V + DP
Sbjct: 103 QGAMLYAPGVLKADKGIKEGDEVQIR---------------------------DP----- 130
Query: 198 SGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVL---EGEIFLQNLPSIVTA 254
GL +G G A M + A+ G+AV++ F+LPS ++ +G + Q+LPS++TA
Sbjct: 131 RGLLVGIGIARMDYREMVMATRGLAVEVTLPKFKLPSLSELESFEKGYFYPQSLPSMITA 190
Query: 255 HALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCI 314
L+P + + I+DM AAPGGKT+ IA LL++ GE++A+D+S N++ ++ +G+K +
Sbjct: 191 RILEPSEEDLIIDMAAAPGGKTSHIAQLLQNRGEIIAIDKSENRLKKMKDNLKRLGVKNV 250
Query: 315 TTYKLDA 321
+DA
Sbjct: 251 RLIHMDA 257
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
Query: 427 DRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTIN 486
D++LLDAPC+ALG+RP+L+ T + + +YQR A++ +R GG++VYSTCT++
Sbjct: 268 DKILLDAPCTALGVRPKLWETR-TPKDIEATARYQRAFIWAAIKSLRKGGVLVYSTCTLS 326
Query: 487 PGENE 491
ENE
Sbjct: 327 YEENE 331
>gi|195019305|ref|XP_001984952.1| GH16775 [Drosophila grimshawi]
gi|193898434|gb|EDV97300.1| GH16775 [Drosophila grimshawi]
Length = 449
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/209 (38%), Positives = 112/209 (53%), Gaps = 27/209 (12%)
Query: 124 KEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGT 183
K+VIV C A+LRGA ++ PGV+A S+ + ++V V + G
Sbjct: 103 KQVIVDTSCGAALLRGAHIFAPGVLAMESNTQLQELVNVYADLP--------------GK 148
Query: 184 VLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASE-------GIAVDMHNRIFQLPSFY 236
+G+ T Y +++G G M R +++ +E GIAV M I +P+
Sbjct: 149 CKRGTATR--YVCDEKIFLGVGQVQMQRHQLYKNNEKEESSPTGIAVRMQRNISGVPTLG 206
Query: 237 DVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296
D+ + LQNLPSIV L PQ GERILDMCAAPG KTT +A L+ D G +VA+D S
Sbjct: 207 DLSDANGLLQNLPSIVCVRVLGPQPGERILDMCAAPGNKTTHMAELMGDVGTIVALDNSA 266
Query: 297 NKVMDIQ-KLAAEMGLKCITTYKLDALKA 324
N++ +Q KLA CI T++ DA KA
Sbjct: 267 NRLRAMQSKLA---NYSCIETHQFDATKA 292
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 85/162 (52%), Gaps = 19/162 (11%)
Query: 336 NMCNSKDNNYITSQTSDSMKLHKEVPSIAA--EGLNGDKSCKEKVSNEKGVERTYVSKAD 393
+MC + N +T+ +L +V +I A N ++ + K++N +E + D
Sbjct: 237 DMCAAPGN-----KTTHMAELMGDVGTIVALDNSANRLRAMQSKLANYSCIE---THQFD 288
Query: 394 TRKNMRRMRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQS 453
K NGP + F+ +SFDR+LLDAPCS LG RP+L + + +
Sbjct: 289 ATKAWHAAGNGP---------SSGPPPFASDSFDRILLDAPCSGLGNRPQLCSNVKQAKV 339
Query: 454 LRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEALCA 495
L+++ QR + QAV L+RPGGI+VYSTCTI E E L A
Sbjct: 340 LQSYPHIQRNLMAQAVPLLRPGGILVYSTCTITEAECEQLVA 381
>gi|57642057|ref|YP_184535.1| tRNA/rRNA cytosine-C5-methylase NOL1/NOP2/Sun family protein
[Thermococcus kodakarensis KOD1]
gi|57160381|dbj|BAD86311.1| tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family, containing
RNA-binding PUA domain [Thermococcus kodakarensis KOD1]
Length = 383
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 87/309 (28%), Positives = 154/309 (49%), Gaps = 61/309 (19%)
Query: 18 QVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEAD 77
++ EY+ + +G++ I +L P IRVNTLKT+ ++++
Sbjct: 10 ELREYYRKLFGSEA-EEIMASLRTPVEKYYIRVNTLKTSRSELMR--------------- 53
Query: 78 VASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVL 137
RL+ + + P LE ++ + GP+ D Y+P K+V+ ++ +E+V
Sbjct: 54 -------RLRREGLKPKRSPYLEEGIYFEREGPN-FDDDYDPGL--KKVVANKFASESVY 103
Query: 138 RGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFER 197
+GA +Y PGV+ ++ GD V + DP
Sbjct: 104 QGAMLYAPGVLKADKGIKPGDEVEIR---------------------------DP----- 131
Query: 198 SGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDV---LEGEIFLQNLPSIVTA 254
GL +G G A MS + A+ G+AV++ F+LPS ++ EG + Q+LPS+V +
Sbjct: 132 RGLLVGIGIARMSGKEMITATRGLAVEVTLPKFKLPSLSELESFKEGLFYAQSLPSMVAS 191
Query: 255 HALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCI 314
L+P + + I+DM AAPGGKT+ IA L+++ GE++A+D+S N++ +++ +G+K +
Sbjct: 192 RVLEPSEEDLIIDMAAAPGGKTSHIAQLMQNRGEIIAIDKSRNRLRKMEEELKRLGVKNV 251
Query: 315 TTYKLDALK 323
+DA K
Sbjct: 252 RLIHMDARK 260
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 46/66 (69%), Gaps = 1/66 (1%)
Query: 427 DRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTIN 486
D++LLDAPC+ALG+RP+L+ T + + +YQR A++ +R GG +VYSTCTI+
Sbjct: 269 DKILLDAPCTALGIRPKLWETR-TPKDIEATARYQRAFIWAAIKSLRKGGTLVYSTCTIS 327
Query: 487 PGENEA 492
ENEA
Sbjct: 328 YEENEA 333
>gi|325186979|emb|CCA21523.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 463
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 103/315 (32%), Positives = 158/315 (50%), Gaps = 42/315 (13%)
Query: 19 VEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADV 78
VE+ AYG+ + I KAL P + IR++T + + D QKL ++ N+ + +
Sbjct: 17 VEDALQAAYGSSKWDSIKKALAYPPQETTIRIHTTQCSPQDAHQKL-SMALNAINPQL-- 73
Query: 79 ASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHT-IDYGYEPDKPPKEVIVSRKCAEAVL 137
++ K L + I QIP + P+T + Y YE +IV R C EAVL
Sbjct: 74 -TAQKHALIHEII---QIPSMH---------PNTSLKYDYEK----ASLIVDRLCGEAVL 116
Query: 138 RGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFER 197
RG+ ++ GVM ++ V + V ++ L G L RG
Sbjct: 117 RGSDIFARGVMCLTAGCSANVSVNILVDLDHKNLRGS-DLNAHRG--------------- 160
Query: 198 SGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVLEGEIF-LQNLPSIVTAHA 256
L+IG G MSR I +A G+AV R+ + LE ++F LQ PS + H
Sbjct: 161 RKLFIGVGRTRMSRIEILKADRGLAVSDIVRVCHNAPPLNGLESKVFYLQQFPSAMVGHV 220
Query: 257 LDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL--KCI 314
+ PQ + ILDMCAAPGGKTT +A+L+ +G ++AVDRS KV +++L ++GL + I
Sbjct: 221 IHPQNDDYILDMCAAPGGKTTHMANLM-TKGLIIAVDRSRRKVGALKRLLQDLGLGKRVI 279
Query: 315 TTYKLDALKAVRRKN 329
+K D+ + +R K+
Sbjct: 280 AIHK-DSTQLLRLKS 293
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 58/82 (70%), Gaps = 3/82 (3%)
Query: 416 ENS--KGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVR 473
ENS +GF P SFD++LLD PCSALGLRPRL +T ++L K QR + AV+L++
Sbjct: 309 ENSHFRGFYPESFDKILLDPPCSALGLRPRLLHPRDT-EALEQFVKIQRNLIWCAVRLLK 367
Query: 474 PGGIIVYSTCTINPGENEALCA 495
G++V+STCT++P ENE + A
Sbjct: 368 ADGVLVFSTCTLHPRENEKMVA 389
>gi|332158464|ref|YP_004423743.1| nol1-nop2-sun family nucleolar protein III [Pyrococcus sp. NA2]
gi|331033927|gb|AEC51739.1| nol1-nop2-sun family nucleolar protein III [Pyrococcus sp. NA2]
Length = 388
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 87/307 (28%), Positives = 153/307 (49%), Gaps = 61/307 (19%)
Query: 18 QVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEAD 77
++++Y+ R +G + I + L P + IRVNTLK T + +I++L
Sbjct: 12 ELQDYYRRLFGREA-DEIMRKLREPVEHYYIRVNTLKITREKLIEEL------------- 57
Query: 78 VASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVL 137
+ + + P L ++ GP+ D ++P P V+ ++ AE+V
Sbjct: 58 ---------KKEGLRPFRSPYLSEGLYFVREGPNFPD-DFDPKLP--TVVANKYAAESVY 105
Query: 138 RGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFER 197
+GA +Y PGV+ +++GD V + DP
Sbjct: 106 QGAMLYAPGVLKADKGIKEGDEVQIR---------------------------DP----- 133
Query: 198 SGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVL---EGEIFLQNLPSIVTA 254
GL +G G A M + A++G+AV++ F+LPS ++ +G + Q LPS+VTA
Sbjct: 134 RGLLVGIGIARMDYREMIEATKGLAVEVTLPKFKLPSLSELKSFEKGYFYPQGLPSMVTA 193
Query: 255 HALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCI 314
L+P++ + I+DM AAPGGKTT IA LL++ GE++A+D+S N++ +++ +G+K +
Sbjct: 194 RILEPREDDVIIDMTAAPGGKTTHIAQLLQNRGEIIAIDKSKNRLKKMEENLKRLGVKNV 253
Query: 315 TTYKLDA 321
++DA
Sbjct: 254 KLIQMDA 260
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 47/65 (72%), Gaps = 1/65 (1%)
Query: 427 DRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTIN 486
D++LLDAPC+ALG+RP+L+ E T + + +YQR A++ ++ GGI+VYSTCT++
Sbjct: 271 DKILLDAPCTALGVRPKLWE-ERTPKHIEATARYQRAFIWAAIKSLKKGGILVYSTCTLS 329
Query: 487 PGENE 491
ENE
Sbjct: 330 YEENE 334
>gi|321456480|gb|EFX67587.1| hypothetical protein DAPPUDRAFT_63836 [Daphnia pulex]
Length = 449
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 96/302 (31%), Positives = 150/302 (49%), Gaps = 53/302 (17%)
Query: 35 ISKALTRPSCYSCIRVNTLKTTTD---DVIQKLLAIIQNSGSSEADVASSVKGRLQNGTI 91
+ K L P ++ IRVNT+ T+ + D I++ L+++ S V K
Sbjct: 23 LVKHLKTPPHFTIIRVNTVTTSKEILRDEIEEALSMM----ISPPVVQFHHK-------- 70
Query: 92 SESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACS 151
+ ++ VK + H I+ EP P V+V CA A+LRGA Y PG+ A
Sbjct: 71 -------VHDILVVKSN--HAIE-KVEPIHP--HVMVGLGCAIAILRGANAYSPGITAIP 118
Query: 152 SHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSR 211
+ V GD V+V G G +G + +E ++G G + +R
Sbjct: 119 NGVVIGDKVSV--------------FGDLLGQCKRGWNKE---YEGKKYFVGNGLLLQNR 161
Query: 212 AGIFRAS--EGIAVDMHNRIFQLPSFYDVLEGEI-------FLQNLPSIVTAHALDPQKG 262
+F +G+A++M +F PS D+L FLQNLPS++ HAL+PQ
Sbjct: 162 QDLFSVGVPKGLAINMIEPLFYCPSIGDILLDNKTIGFQKGFLQNLPSVLCGHALNPQSH 221
Query: 263 ERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322
+LD+CAAPGGKTT I SL+ ++G V+A+D+S +K+ IQ+ + ++GL IT + D+
Sbjct: 222 HLVLDLCAAPGGKTTHIGSLMENKGSVIALDKSASKIKQIQENSEKLGLTNITAFVQDST 281
Query: 323 KA 324
A
Sbjct: 282 TA 283
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 55/76 (72%), Gaps = 1/76 (1%)
Query: 418 SKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
S F PNSFDR+LLDAPCSALG RP+L+ ++ +++ + Q+++F A QL+RPGG
Sbjct: 306 SPPFLPNSFDRILLDAPCSALGQRPQLYNPIR-LKEVQSFARLQKKLFLTAAQLLRPGGR 364
Query: 478 IVYSTCTINPGENEAL 493
+VYSTCT N ENE +
Sbjct: 365 MVYSTCTYNIAENEEI 380
>gi|397568241|gb|EJK46037.1| hypothetical protein THAOC_35319 [Thalassiosira oceanica]
Length = 484
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 99/333 (29%), Positives = 154/333 (46%), Gaps = 44/333 (13%)
Query: 19 VEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADV 78
V ++ G S I + +T+ +C RVN LK++ D+V+ L + S
Sbjct: 19 VRDHLSAQCGDALLSSILERMTQSPADTCCRVNLLKSSVDEVMDALREYVIESRERRCVH 78
Query: 79 ASSVKGR--LQNGTI--SESQIPGLEYVVFVKGSGP-------------HTIDYGYEPDK 121
SVK ++ + +ES + GP + G+
Sbjct: 79 RFSVKRHDVFKDLVLVRAESSDSRSTSGSWYHRRGPPNPEGKDIFPRWLKRTELGWPVSH 138
Query: 122 PPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITR 181
+ V+V R C EAVLRGA ++V + + VAV + P++ I R
Sbjct: 139 --RAVVVDRFCGEAVLRGADIFV----------KANEDVAVYADIRAPSVKS-----IAR 181
Query: 182 GTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIF--QLPSFYDVL 239
G VL+ + +++G GT RA +F + G+ V M RI PS +L
Sbjct: 182 GLVLEK-------YSGQCVFLGVGTLCCERAELFSRNSGVGVRM-GRIAGPPQPSLNGIL 233
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+ LQNLPS+ AHAL+P+ G+ I+DMC APGGKT+ IASL+ + G ++A D+S K+
Sbjct: 234 STQHMLQNLPSVAVAHALEPRPGDVIMDMCCAPGGKTSHIASLVGNRGLIIACDKSRKKM 293
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRRKNESN 332
++ L MG CI LD+ K V ++E+
Sbjct: 294 LNTAALFQSMGATCIIPLALDSTKCVIDEDETK 326
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 57/77 (74%)
Query: 417 NSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGG 476
+ KGF +SFDR+LLD PCSALGLRP+L+ + + L+ + +YQ+R + AV+L++ GG
Sbjct: 346 DVKGFHVDSFDRILLDPPCSALGLRPKLYVEARSARHLKKYAEYQKRFVEAAVKLLKRGG 405
Query: 477 IIVYSTCTINPGENEAL 493
+VYSTCTIN ENE +
Sbjct: 406 TLVYSTCTINADENEDM 422
>gi|390961255|ref|YP_006425089.1| nol1-nop2-sun family nucleolar protein III [Thermococcus sp. CL1]
gi|390519563|gb|AFL95295.1| nol1-nop2-sun family nucleolar protein III [Thermococcus sp. CL1]
Length = 385
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 89/307 (28%), Positives = 151/307 (49%), Gaps = 61/307 (19%)
Query: 18 QVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEAD 77
++ EY+ + +G + I +L P IRVNTLKT+ + KL+ I++ G
Sbjct: 12 ELREYYRKLFGKEA-EEIMASLRTPVEKYYIRVNTLKTSRE----KLMRILRREG----- 61
Query: 78 VASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVL 137
+ + P L+ ++ + GP+ D +EP P V ++ AE+V
Sbjct: 62 -------------LKPKRSPYLKEGIYFEREGPNFPD-DHEPGLPV--VRANKFAAESVY 105
Query: 138 RGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFER 197
+GA +Y PGV+ ++ GD V + DP
Sbjct: 106 QGAMLYAPGVLQADKKIKPGDEVEIR---------------------------DP----- 133
Query: 198 SGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDV---LEGEIFLQNLPSIVTA 254
GL +G G A MS + ++ G+AV++ F+LPS ++ EG + Q+LPS+V A
Sbjct: 134 RGLLVGIGIARMSAKEMVVSTRGLAVEVTLPKFRLPSLSELESFKEGLFYAQSLPSMVVA 193
Query: 255 HALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCI 314
H L+P + E I+DM AAPGGKT+ IA L+++ GE++A+D+S N++ ++ +G+K +
Sbjct: 194 HVLEPGEEELIVDMAAAPGGKTSHIAQLMQNRGEIIAMDKSKNRLKKMEGELERLGVKNV 253
Query: 315 TTYKLDA 321
+D+
Sbjct: 254 KPIHMDS 260
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 49/66 (74%), Gaps = 1/66 (1%)
Query: 427 DRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTIN 486
D++LLDAPC+ALG+RP+L+ + T + + +YQR + A++ +R GG++VYSTCT++
Sbjct: 271 DKILLDAPCTALGIRPKLWESR-TPKDIEATARYQRHFINAAIKSLRRGGVLVYSTCTLS 329
Query: 487 PGENEA 492
ENEA
Sbjct: 330 YEENEA 335
>gi|194752568|ref|XP_001958593.1| GF11004 [Drosophila ananassae]
gi|190625875|gb|EDV41399.1| GF11004 [Drosophila ananassae]
Length = 441
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 99/325 (30%), Positives = 152/325 (46%), Gaps = 42/325 (12%)
Query: 6 RYSYSPLLRWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLL 65
RY SP L PQ+E ++ D + P + R+NTL++T D + +L
Sbjct: 2 RYPKSPFLSC-PQLEAEILKVNSTDLAVLLEWLCVAPRTTT-YRINTLRSTVADFKKIVL 59
Query: 66 AIIQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTID-YGYEPDKPPK 124
D + GR ++ GL + V P + Y+PD K
Sbjct: 60 -----------DTLVTRYGR------DAPKVYGLNSLPEVLCIDPLDSNRLNYDPDPTLK 102
Query: 125 EVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTV 184
EVIV C A+LRGA +Y PGV+A ++V + + RGT
Sbjct: 103 EVIVDSTCGAALLRGAHIYAPGVLAMEHRTRFEELVNIFADLAG---------RCKRGTA 153
Query: 185 LQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASE---GIAVDMHNRIFQL-PSFYDVLE 240
++ + + +++G+G +M R +F E G+AV+M + I + P ++
Sbjct: 154 VRFNSAE-------KMFLGKGKVLMQRHHLFNDDEPATGVAVEMLSTISDVVPGLGNLSC 206
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
+ LQNLPSIV LDPQ GE +LDMCAAPG KTT IA L+ D+G V+A+D S ++V
Sbjct: 207 ADALLQNLPSIVCVRVLDPQPGENVLDMCAAPGNKTTHIAELMGDQGCVMALDNSKSRVS 266
Query: 301 DIQKLAAEMGLKCITTYKLDALKAV 325
++ + + I + D+ KAV
Sbjct: 267 TMR--SKLNNYRSIQLHVFDSTKAV 289
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 71/128 (55%)
Query: 368 LNGDKSCKEKVSNEKGVERTYVSKADTRKNMRRMRNGPGRNQCLGGRAENSKGFSPNSFD 427
L GD+ C + N K T SK + ++++ + + + F SFD
Sbjct: 248 LMGDQGCVMALDNSKSRVSTMRSKLNNYRSIQLHVFDSTKAVDALATSISVPPFPCASFD 307
Query: 428 RVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINP 487
R+LLDAPCS LG RP+L + + + L+++ QRR+F QAVQL+R GG +VYSTCT+
Sbjct: 308 RILLDAPCSGLGNRPQLASKIKQPKVLQSYPNIQRRLFTQAVQLLRDGGTLVYSTCTVTE 367
Query: 488 GENEALCA 495
E E + A
Sbjct: 368 PECEGIVA 375
>gi|47217434|emb|CAG10203.1| unnamed protein product [Tetraodon nigroviridis]
Length = 337
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/134 (45%), Positives = 86/134 (64%), Gaps = 3/134 (2%)
Query: 195 FERSGLYIGQGTAMMSRAGIFRASE---GIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSI 251
F+ ++G G A M R+ IF + E GI V M ++Q PSF +L +FLQNLPS+
Sbjct: 24 FQGKRAFVGNGVARMDRSRIFCSDEPVKGIGVQMVEPLYQSPSFDQILPSLVFLQNLPSV 83
Query: 252 VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL 311
V H L P+ GER+LDMCAAPGGKT +A+L+ D+GEVVA+DR NK+ I + A + L
Sbjct: 84 VVGHVLGPRPGERVLDMCAAPGGKTCHMAALMGDQGEVVALDRIKNKINRILENAQVLQL 143
Query: 312 KCITTYKLDALKAV 325
+ I + ++ +AV
Sbjct: 144 RSIKAFCFNSTQAV 157
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 51/71 (71%), Gaps = 1/71 (1%)
Query: 421 FSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
F P SFDRVLLDAPCS LG RP + + +++ + ++ QR++F AVQL++ GG++VY
Sbjct: 170 FPPESFDRVLLDAPCSGLGQRP-IMGSTWSLKEICSYQPLQRKLFQAAVQLLKKGGVLVY 228
Query: 481 STCTINPGENE 491
STCT+ ENE
Sbjct: 229 STCTVTLAENE 239
>gi|422295632|gb|EKU22931.1| hypothetical protein NGA_0447900, partial [Nannochloropsis gaditana
CCMP526]
Length = 297
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 103/189 (54%), Gaps = 17/189 (8%)
Query: 123 PKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRG 182
P V+V R C EAVLRGA V+V GV + S+ + G V + + + + + RG
Sbjct: 83 PFIVVVDRLCGEAVLRGADVFVRGVWSASAGIASGSRVLLLMDLHRHS---------QRG 133
Query: 183 TVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRI-FQLPSFYDVLEG 241
+ Q + + IGQG A++ RA + A+ G+ + + +R+ Q P L G
Sbjct: 134 CLYADYQGE-------AICIGQGVALVPRAELVTATHGLGIRVTHRMGPQAPPLNGFLPG 186
Query: 242 EIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMD 301
+F QNLPS++ H L P G ++D+CA PGGK T +A+L+R EG VVA DRS K+
Sbjct: 187 RLFPQNLPSLLVGHVLAPLPGSTVIDLCACPGGKATHLATLMRGEGVVVACDRSRKKIKA 246
Query: 302 IQKLAAEMG 310
+Q L MG
Sbjct: 247 LQALGERMG 255
>gi|193582508|ref|XP_001950228.1| PREDICTED: putative methyltransferase NSUN6-like [Acyrthosiphon
pisum]
Length = 447
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 100/336 (29%), Positives = 158/336 (47%), Gaps = 49/336 (14%)
Query: 19 VEEYFIRAYGADHFSR------ISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSG 72
++EY + + + +R +S+ LT S RVNTLK T +V+ + I N
Sbjct: 13 LDEYVLNLLKSIYKTRNLSVEEVSQWLTSAPLNSYFRVNTLKITPLEVMTSINEQISNLK 72
Query: 73 SSEADVASSVKGRLQNGTISESQI---PGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVS 129
RL+N + + L + + +D P K +EVIV
Sbjct: 73 ------------RLKNIEKKQHSVRVHKHLSDCIVISPMDKSLLDLS--PKK--EEVIVD 116
Query: 130 RKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQ 189
++VLRG+ ++ PG+MA + V+ ++V + + G RG
Sbjct: 117 IATGQSVLRGSHIFAPGIMAMAPEVQVDSFISVYADLAK---------GCKRGY------ 161
Query: 190 TDPYYFERSGLYIGQGTAMMSRAGIFRAS---EGIAVDMHNRIFQLPSFYDVLEGEI-FL 245
YY +++G G A M+R +F +GIAV+M + +PSF L E L
Sbjct: 162 -QKYYDNPMKMFVGNGIAKMNRRQLFNGDMNPKGIAVEMTDPATGIPSF--TLPNEYGML 218
Query: 246 QNLPSIVTAHALDPQKGE-RILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQK 304
QNLPS+VT HALD + ++LDMCAAPG KTT IA L+ ++G + AVD+S K+ ++
Sbjct: 219 QNLPSVVTGHALDVNENNLKVLDMCAAPGNKTTHIAILMNNKGSIDAVDKSKTKLNKVEL 278
Query: 305 LAAEMGLKCITTYKLDALKAVRRKNESN-DEPNMCN 339
G++ + + D+L +V N +N D P N
Sbjct: 279 RCKHFGIQNVKIHHFDSLVSVDLNNINNSDRPPFKN 314
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/71 (54%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 421 FSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
F SFDRVLLDAPCS LG RP L E L+ QR++ A+ LV+PGGI+VY
Sbjct: 312 FKNESFDRVLLDAPCSNLGQRP-LLKIEVDKNVLKRFPALQRKLLINAINLVKPGGILVY 370
Query: 481 STCTINPGENE 491
STCTI ENE
Sbjct: 371 STCTITLEENE 381
>gi|409096619|ref|ZP_11216643.1| tRNA/rRNA cytosine-C5-methylase NOL1/NOP2/Sun family protein
[Thermococcus zilligii AN1]
Length = 383
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 87/309 (28%), Positives = 151/309 (48%), Gaps = 61/309 (19%)
Query: 18 QVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEAD 77
++ EY+ +G++ I +L P IRVNTLKT+ KL+ +++ G
Sbjct: 10 ELREYYRGLFGSEA-DEIMASLRTPVEKYYIRVNTLKTSRS----KLMEVLKKEG----- 59
Query: 78 VASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVL 137
+ + P L+ ++ + GP+ D Y P K+V+ ++ AE+V
Sbjct: 60 -------------LKPKRSPYLKEGIYFEREGPN-FDDDYNPGL--KKVVANKFAAESVY 103
Query: 138 RGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFER 197
+GA +Y PGV+ ++ GD V + DP
Sbjct: 104 QGAMLYAPGVLKADGDIKPGDEVEIR---------------------------DP----- 131
Query: 198 SGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDV---LEGEIFLQNLPSIVTA 254
GL +G G A MS + ++ G+AV++ F+LPS ++ EG + Q+LPS+VTA
Sbjct: 132 KGLLVGVGIARMSAKEMETSTRGLAVEVTLPKFKLPSLSELESFREGLFYAQSLPSMVTA 191
Query: 255 HALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCI 314
L+P + + ++DM AAPGGKT IA L+ + GE++A+D+S N++ +++ +G+K +
Sbjct: 192 RVLEPGEEDLVIDMAAAPGGKTGHIAQLMGNRGEIIAIDKSRNRLKKMEEELNRLGVKNV 251
Query: 315 TTYKLDALK 323
+D+ K
Sbjct: 252 KLLHMDSRK 260
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 47/66 (71%), Gaps = 1/66 (1%)
Query: 427 DRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTIN 486
D++LLDAPC+ALG+RP+L+ + T + + +YQR A++ ++ G++VYSTCTI+
Sbjct: 269 DKILLDAPCTALGIRPKLWESR-TPKDIEATARYQRAFIWAAIKSLKRDGVLVYSTCTIS 327
Query: 487 PGENEA 492
ENEA
Sbjct: 328 YEENEA 333
>gi|305663689|ref|YP_003859977.1| Fmu (Sun) domain-containing protein [Ignisphaera aggregans DSM
17230]
gi|304378258|gb|ADM28097.1| Fmu (Sun) domain protein [Ignisphaera aggregans DSM 17230]
Length = 390
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/304 (26%), Positives = 144/304 (47%), Gaps = 64/304 (21%)
Query: 12 LLRWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNS 71
+L ++ V R YG D + +A+T+P +RVNTLKT+ ++I +L
Sbjct: 5 MLIYDEGVISALKRVYG-DFYRDFLEAITKPGSRLYLRVNTLKTSVGEIIDRL------- 56
Query: 72 GSSEADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRK 131
+GR + + E L +++ GP+ ++ K+V+V +
Sbjct: 57 -----------RGRGIDVYVDEE----LGEAIYIPIQGPYKVELH------DKKVVVDKY 95
Query: 132 CAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTD 191
AE+V G+ +YVPGV+ CSS +EKGD V++
Sbjct: 96 AAESVYLGSHLYVPGVVKCSSDIEKGDEVSI----------------------------- 126
Query: 192 PYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDV---LEGEIFLQNL 248
+G+ +G+G AM+S + + +G+AV +++ P ++ EG I+ Q+L
Sbjct: 127 ---VSENGVVVGEGIAMLSCSEMLERKKGLAVKTIRSVYRAPPIRELPEYREGLIYPQSL 183
Query: 249 PSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAE 308
P++ + +DP+ GE I+DMCAAPGGKT + L R + + A D S ++ +++
Sbjct: 184 PAMYVSRVVDPKPGEIIVDMCAAPGGKTGHMVELSRGKAYIFAFDHSRKRIEEMKNTLDR 243
Query: 309 MGLK 312
+G +
Sbjct: 244 LGYR 247
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Query: 427 DRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTIN 486
D++L+D PCSALG+RP+++ ++ + + +YQ + A +V+ GGIIVYSTCT+
Sbjct: 270 DKILIDPPCSALGVRPKIYD-RKSYSDIVSASRYQIQFLKSASIIVKIGGIIVYSTCTVT 328
Query: 487 PGENE 491
ENE
Sbjct: 329 VEENE 333
>gi|302854610|ref|XP_002958811.1| hypothetical protein VOLCADRAFT_100142 [Volvox carteri f.
nagariensis]
gi|300255831|gb|EFJ40115.1| hypothetical protein VOLCADRAFT_100142 [Volvox carteri f.
nagariensis]
Length = 401
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 89/267 (33%), Positives = 124/267 (46%), Gaps = 47/267 (17%)
Query: 229 IFQLP-SFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEG 287
+F LP + +L GE+ LQ LPSIV A L P G +LDMCAAPGGKTT +A ++ +G
Sbjct: 7 LFPLPPARPGILRGEMMLQALPSIVAAMVLSPPPGSTVLDMCAAPGGKTTLLAQIMGGQG 66
Query: 288 EVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYI 346
+VVA+D + KV +I+ LAA+M + C+ Y+ DA+ AV+ + E + +
Sbjct: 67 KVVAIDCTAAKVSEIKSLAADMDVGGCVEVYQGDAVHAVQAAVQVRKE---GAGEGGGQL 123
Query: 347 TSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKVSNEK-GVERTYVSKADTRKNMRRMRNGP 405
+ + + H G C+ E G + + ++ G
Sbjct: 124 FTPVAPEQEEH------------GGNICEAGDEGEAVGTGEEGSTGPQVKVKVKVKTYGE 171
Query: 406 GRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMF 465
G Q G +FD +LLD PCSALGLRPRL A SL+
Sbjct: 172 GEQQAPFGPPPYPP----GTFDYILLDPPCSALGLRPRLLHA----WSLKQ--------- 214
Query: 466 DQAVQLVRPGGIIVYSTCTINPGENEA 492
+VY TCTINP ENEA
Sbjct: 215 ------------LVYCTCTINPDENEA 229
>gi|348549914|ref|XP_003460778.1| PREDICTED: putative methyltransferase NSUN6-like [Cavia porcellus]
Length = 314
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 54/109 (49%), Positives = 74/109 (67%)
Query: 219 EGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTA 278
+GI + M I+ PSF +VL G +FLQNLP+ V AH L PQ GER+LD+CAAPGGK T
Sbjct: 30 QGIGIRMTEPIYLSPSFDNVLPGYLFLQNLPTAVVAHVLHPQPGERVLDLCAAPGGKATH 89
Query: 279 IASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRR 327
IA+L+ D+GE +A+D+ NKV I++ A +GL I + D KA++
Sbjct: 90 IAALMHDQGEAIALDKIPNKVEKIKQNALLLGLNSIKAFCFDGTKALKH 138
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 53/78 (67%), Gaps = 1/78 (1%)
Query: 414 RAENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVR 473
+ + FSP SFDR+LLDAPCS +G RP + A T++ + ++ QR+ F A QL++
Sbjct: 143 KTDEGPPFSPESFDRILLDAPCSGMGQRPNM-ACTWTLKEVMSYQPLQRKFFSVAAQLLK 201
Query: 474 PGGIIVYSTCTINPGENE 491
PGG+++YSTCTI ENE
Sbjct: 202 PGGMLIYSTCTITLAENE 219
>gi|270013278|gb|EFA09726.1| hypothetical protein TcasGA2_TC011859 [Tribolium castaneum]
Length = 425
Score = 114 bits (286), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 110/214 (51%), Gaps = 23/214 (10%)
Query: 119 PDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLG 178
P K KE++V C AVLRGA +Y PGV+ S+++ GD V++ V +++ G L
Sbjct: 99 PQKHNKEIVVDAVCGAAVLRGAHIYAPGVIGMMSNIQIGDNVSIYVDLDKKCKKGFLKL- 157
Query: 179 ITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIF--RASEGIAVDMHNRIFQLPSFY 236
G +T +IG G ++ R +F G+A+ M I P
Sbjct: 158 ------YNGKKT----------FIGNGEVILGRNHLFCETPQTGLAIKMIETISSCPPVL 201
Query: 237 D---VLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVD 293
+ G LQNLPSI+ H L P + ILDMCA+PG KTT IA+LL+++G +VA+D
Sbjct: 202 GDNFLPPGAALLQNLPSIICTHVLAPCPNDTILDMCASPGNKTTHIAALLKNQGRLVAID 261
Query: 294 RSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRR 327
++ KV +++ G K + + D+ K + R
Sbjct: 262 KTPTKVAQLRQRCENFGAK-VEILQTDSTKLLDR 294
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Query: 421 FSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
F SFD++LLDAPCSALG RP+ F + + LR++ QR++F+ AVQL++ G +VY
Sbjct: 295 FCYESFDKILLDAPCSALGKRPQ-FVNTTSRKILRSYVPLQRKLFETAVQLLKTDGTLVY 353
Query: 481 STCTINPGENEALCA 495
STCTI ENE + A
Sbjct: 354 STCTITLAENEGIVA 368
>gi|357604419|gb|EHJ64179.1| hypothetical protein KGM_18459 [Danaus plexippus]
Length = 421
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/273 (29%), Positives = 128/273 (46%), Gaps = 31/273 (11%)
Query: 125 EVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTV 184
EV+V CA AVLRGA VY PGV+ ++ + V + G G
Sbjct: 76 EVVVDSMCAAAVLRGAHVYAPGVLGLPTNCSLNERVDI--------------YGDLDGHC 121
Query: 185 LQGSQTDPYYFERSGLYIGQGTAMMSRAGIFR---ASEGIAVDMHNRIFQLPSFYDVL-- 239
+G + + ++ +Y+G G M R +F GIA++ +LP + +
Sbjct: 122 KRGLKVE---YKGRKIYVGTGYIRMLRYQLFDDGVQPNGIAIETLLPASRLPVINESMYP 178
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G + LQNLPSI+T ++ Q E ILDMCA+PG KTT +A + ++ + A+D++ KV
Sbjct: 179 KGHLVLQNLPSIITGWVVNAQPNEHILDMCASPGNKTTHLAEMSNNQAHITAIDKTDKKV 238
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKE 359
+ I++ G+ C+ T+ D+ K +DE N N K Y S T D + L
Sbjct: 239 IKIRQSCETQGVTCVHTFAFDSTKC------HSDEAN--NEKGPPY-KSNTFDKVLLDAP 289
Query: 360 VPSIAAEGLNGDKSCKEKVSNEKGVERTYVSKA 392
+ L +K + + + K V+R A
Sbjct: 290 CSGLGQRPLLNNKMTAKMLQSYKFVQRKLFDSA 322
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 58/87 (66%), Gaps = 3/87 (3%)
Query: 409 QCLGGRAENSKG--FSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFD 466
+C A N KG + N+FD+VLLDAPCS LG RP L + T + L+++ QR++FD
Sbjct: 262 KCHSDEANNEKGPPYKSNTFDKVLLDAPCSGLGQRP-LLNNKMTAKMLQSYKFVQRKLFD 320
Query: 467 QAVQLVRPGGIIVYSTCTINPGENEAL 493
AV++++ GG +VYSTCT+ ENE +
Sbjct: 321 SAVKVLKVGGKLVYSTCTVTVEENEGM 347
>gi|307198376|gb|EFN79318.1| Putative methyltransferase NSUN6 [Harpegnathos saltator]
Length = 442
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 80/216 (37%), Positives = 113/216 (52%), Gaps = 30/216 (13%)
Query: 121 KPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGIT 180
K P E+IV KC AVLRG+ VY PG+M SS + V+V +
Sbjct: 95 KYPDEIIVDAKCGAAVLRGSHVYAPGIMGISSGLSIDTKVSVFADIT------------- 141
Query: 181 RGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIF----RASEGIAV---DMHNRIFQLP 233
G +GS PY + S +Y+G G +R +F + GIAV D+ +RI QL
Sbjct: 142 -GRCKKGS-IQPYA-DDSKMYLGNGVLRQTRKQLFGKTAKNPSGIAVIMTDVISRIPQLN 198
Query: 234 SFYDVLEGE----IFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEV 289
+ D E LQNLPSIV + L+PQ GE ILDMCAAPG KTT I+ L+R +G +
Sbjct: 199 ATADPPESLRPLCALLQNLPSIVCSLVLNPQPGETILDMCAAPGNKTTHISYLMRGQGMI 258
Query: 290 VAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAV 325
+A++++ KV +++ + +K + DA AV
Sbjct: 259 IALEKNPGKVARLREKCNDGNVK---IFCCDAANAV 291
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 56/82 (68%), Gaps = 1/82 (1%)
Query: 414 RAENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVR 473
RA + F + FDR+LLD PCSALG RP+L A ++Q LR++ QRR+F AV+L++
Sbjct: 300 RATDGPPFPEDHFDRILLDTPCSALGQRPQLSNAITSVQ-LRSYVPLQRRLFFAAVRLLK 358
Query: 474 PGGIIVYSTCTINPGENEALCA 495
P G +VYSTCT+ ENE + A
Sbjct: 359 PRGTLVYSTCTVTIAENEGIVA 380
>gi|167520882|ref|XP_001744780.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163777111|gb|EDQ90729.1| predicted protein [Monosiga brevicollis MX1]
Length = 305
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 107/205 (52%), Gaps = 26/205 (12%)
Query: 135 AVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYY 194
A+ RGA V+ PG+ + +E G V SVAV D TRG P
Sbjct: 2 AIWRGAHVFAPGIKS----LEAGIVPDSSVAVYADVDDA-----YTRG------HNGPC- 45
Query: 195 FERSGLYIGQGTAMMSRAGIFRASE--GIAVDMHNRIFQ---LPSFYDVLEGEIFLQNLP 249
+ L++G G A ++RA F+ + G+A+ M +FQ LP LE LQNLP
Sbjct: 46 -DHRLLFVGNGIAHVARATFFKDEQPRGLAITMTAAVFQTMDLPP----LEPNAILQNLP 100
Query: 250 SIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEM 309
S V A AL P+ G R+LDMCAAPGGKT+ I+ LLR G VVA++RS + +++ A +
Sbjct: 101 SCVAARALAPEPGMRVLDMCAAPGGKTSHISLLLRGTGTVVALERSPKRAAQLKEWVASL 160
Query: 310 GLKCITTYKLDALKAVRRKNESNDE 334
G + +++DA K + N +
Sbjct: 161 GCHNVEVHQMDATKCLEGSKGKNSK 185
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 56/87 (64%), Gaps = 3/87 (3%)
Query: 408 NQCL-GGRAENSKGFSPNSFDRVLLDAPCSALGLRPRL-FAAEETIQSLRNHGKYQRRMF 465
+CL G + +NSK F SFD VLLDAPCS LG RPR+ + L ++ YQR++
Sbjct: 173 TKCLEGSKGKNSK-FPLASFDAVLLDAPCSGLGQRPRVRVDCPLRVAELEDYASYQRKLL 231
Query: 466 DQAVQLVRPGGIIVYSTCTINPGENEA 492
AV +RPGG +V+STC++ GENEA
Sbjct: 232 QVAVAALRPGGRLVFSTCSLFAGENEA 258
>gi|71664344|ref|XP_819153.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70884443|gb|EAN97302.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 561
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 110/396 (27%), Positives = 159/396 (40%), Gaps = 114/396 (28%)
Query: 132 CAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTD 191
CAEAVLRG+ V+ PGV++ G V V V ++ + G G R T+L
Sbjct: 131 CAEAVLRGSDVFAPGVVSFVGSFVAGQEVFVGVYLQPASASTSAGGGTDRRTLL------ 184
Query: 192 PYYFERSGLYIGQGTAMMSRAGIFRASE-GIAVDMHNRIFQLPS---FYDVLEGEI---- 243
L +G GTA+M R I R + G+AV + PS +L+ +
Sbjct: 185 --------LCVGAGTALMDRREIIRGRQNGVAVRTNWTPMAQPSKSILSSMLDAAVATLL 236
Query: 244 ----------FLQNLPSIVTAHALDPQKGE---------RILDMCAAPGGKTTAIASLLR 284
FLQN S+V L Q LD CAAPGGK + + SLL
Sbjct: 237 KAGATETSSFFLQNYSSMVAVDVLVQQFSSIDIQREGPLAFLDACAAPGGKASLLLSLL- 295
Query: 285 DEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDE--PNM----C 338
H KV Q L + +G +K++S+D P C
Sbjct: 296 -----------HEKV---QGLDSSLG----------------KKDKSSDSVFPTFTLTCC 325
Query: 339 NSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKVSNEKGVERTYVSKADTRKNM 398
Y + D ++LH +S K + R + + +
Sbjct: 326 ERSKARY--KRLLDLLELHF------------------GISIVKRLVRPFCGDVNKLQKT 365
Query: 399 RRMRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHG 458
+R + +C F +LLD PC+ +GLRP+L A T Q +R+
Sbjct: 366 QRDEDVDSMWEC--------------EFHGILLDPPCTGMGLRPKLNAHLITPQGIRDSA 411
Query: 459 KYQRRMFDQAVQLVRPGG--IIVYSTCTINPGENEA 492
YQR++FD V+++R G ++VYSTCTI ENEA
Sbjct: 412 DYQRKLFDSCVKMLRRTGTSVLVYSTCTITLDENEA 447
>gi|332017885|gb|EGI58545.1| Putative methyltransferase NSUN6 [Acromyrmex echinatior]
Length = 461
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/216 (33%), Positives = 107/216 (49%), Gaps = 25/216 (11%)
Query: 123 PKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRG 182
P E+IV C AVLRG+ VY PGV+ + + V+V V G G+ +
Sbjct: 118 PDEIIVDAICGAAVLRGSHVYAPGVIGMPNGLSINTKVSVFADVA-----GQCKKGLIKP 172
Query: 183 TVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIF----RASEGIAVDMHNRIFQLPSFY-- 236
Y + +Y+G G +R +F R GIA+ M + I ++P
Sbjct: 173 -----------YANSNKIYLGNGILRQTRKELFCKAARNPRGIAIIMTDVISRVPQLNVN 221
Query: 237 -DVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRS 295
+ L LQNLPSIV + L+PQ GE ILDMCAAPG KTT I+ L++ +G ++A++++
Sbjct: 222 NESLRPHALLQNLPSIVCSLVLNPQPGETILDMCAAPGNKTTHISLLMKGQGTIIALEKN 281
Query: 296 HNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNES 331
KV ++ K I + DA KA+ + S
Sbjct: 282 LGKVKRFKEKCENE--KNIKIFCCDATKAIIEREHS 315
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 82/163 (50%), Gaps = 19/163 (11%)
Query: 336 NMCNSKDNNYITSQTSDSMKLHKEVPSIAAE-GLNGDKSCKEKVSNEKGVERTYVSKADT 394
+MC + N T+ S MK + IA E L K KEK NEK ++ + D
Sbjct: 253 DMCAAPGNK--TTHISLLMKGQGTI--IALEKNLGKVKRFKEKCENEKNIK---IFCCDA 305
Query: 395 RKNMRRMRNGPGRNQCLGGRAENSKG--FSPNSFDRVLLDAPCSALGLRPRLFAAEETIQ 452
K + + R E++ G F N FDR+LLD PCSALG RP+L+ Q
Sbjct: 306 TKAIIEREHSFVR--------EHTDGPPFEENYFDRILLDTPCSALGQRPQLYNTITPAQ 357
Query: 453 SLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEALCA 495
L ++ QR +F AV+L++ G +VYSTCTI ENE + A
Sbjct: 358 -LHSYVPLQRNLFSTAVRLLKLKGTLVYSTCTITIAENEGIIA 399
>gi|119719409|ref|YP_919904.1| Fmu (Sun) domain-containing protein [Thermofilum pendens Hrk 5]
gi|119524529|gb|ABL77901.1| Fmu (Sun) domain protein [Thermofilum pendens Hrk 5]
Length = 389
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/197 (36%), Positives = 101/197 (51%), Gaps = 40/197 (20%)
Query: 123 PKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRG 182
P +V V +K AE+V GA V+ PGV + E GD+V+V I G
Sbjct: 93 PGKVYVDKKTAESVYVGANVFAPGVTKVENARE-GDLVSV----------------IAPG 135
Query: 183 TVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPS-----FYD 237
G + +G M + +F +G+AV + +++ S ++D
Sbjct: 136 ----------------GRVVAEGVLSMDPSRVFSERKGLAVRVVRSVYRAVSLRETRYFD 179
Query: 238 VLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHN 297
EG I+ Q+LPS+V LDPQ G +LDMCAAPGGKTT A L+ D GEV+AVDR+ +
Sbjct: 180 --EGLIYHQSLPSMVAVRLLDPQPGWTVLDMCAAPGGKTTHAAQLMGDHGEVIAVDRTKS 237
Query: 298 KVMDIQKLAAEMGLKCI 314
KV I + A +GLK +
Sbjct: 238 KVDTIMEHARRLGLKSV 254
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Query: 424 NSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTC 483
+S D V++D PC+ALG+RP+L+ E + YQR+ +A +++R GG ++++TC
Sbjct: 271 DSVDAVIIDPPCTALGVRPKLWY-ERGFDDVLKLSDYQRQFLREAAKVLRRGGRLLFTTC 329
Query: 484 TINPGENE 491
TI+P ENE
Sbjct: 330 TISPYENE 337
>gi|307169943|gb|EFN62452.1| Putative methyltransferase NSUN6 [Camponotus floridanus]
Length = 462
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/216 (32%), Positives = 113/216 (52%), Gaps = 26/216 (12%)
Query: 123 PKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRG 182
P E+IV C AVLRG+ VY PGV+ + G ++ V+V + G G+ +
Sbjct: 120 PNEIIVDAICGAAVLRGSHVYAPGVIG----MPNGLIINCKVSVFA-DVTGHCKKGLIKP 174
Query: 183 TVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASE----GIAV---DMHNRIFQLPSF 235
Y + +Y+G G +R +F + GIA+ D+ +R+ QL +
Sbjct: 175 -----------YPDSKKMYLGNGILRQTRKELFGKAATNPCGIAIIMSDVISRVPQLNTD 223
Query: 236 YDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRS 295
+ L LQNLPSI+ + L+PQ GE ILDMCAAPG KTT I+ L++ +G+++A++++
Sbjct: 224 NEFLRPYALLQNLPSIICSLVLNPQPGETILDMCAAPGNKTTHISFLMKGQGKIIALEKN 283
Query: 296 HNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNES 331
K ++ + +K + DA KAV + +S
Sbjct: 284 AGKAKRFKEKCNDENIK---IFCYDATKAVVERGDS 316
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Query: 421 FSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
F + FDR+LLDAPCSALG RP+L+ T+ LR++ QR +F AV+L++ GI+VY
Sbjct: 326 FKQDHFDRILLDAPCSALGQRPQLYNTI-TLAQLRSYIPLQRSLFSAAVRLLKQNGILVY 384
Query: 481 STCTINPGENEALCA 495
STCTI ENE + A
Sbjct: 385 STCTITIAENEGIIA 399
>gi|189241190|ref|XP_001810247.1| PREDICTED: similar to GA10764-PA [Tribolium castaneum]
Length = 516
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 83/308 (26%), Positives = 130/308 (42%), Gaps = 69/308 (22%)
Query: 20 EEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVA 79
+E + A ++K L + + RVNTLK + + + A I +G
Sbjct: 147 DETNVSEVNAIQIGEVTKWLCQAPKITSFRVNTLKADVGEAHRWIRAHIAGAGLD----- 201
Query: 80 SSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRG 139
+ + P V V H P K KE++V C AVLRG
Sbjct: 202 -----------LRVERHPSCADAVIVHHPVSHQ-----TPQKHNKEIVVDAVCGAAVLRG 245
Query: 140 AQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSG 199
A +Y PGV+ S+++ GD V++ V +++ G L G +T
Sbjct: 246 AHIYAPGVIGMMSNIQIGDNVSIYVDLDKKCKKGFLKL-------YNGKKT--------- 289
Query: 200 LYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDP 259
+IG G ++ RA + LQNLPSI+ H L P
Sbjct: 290 -FIGNGEVILGRAAL------------------------------LQNLPSIICTHVLAP 318
Query: 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKL 319
+ ILDMCA+PG KTT IA+LL+++G +VA+D++ KV +++ G K + +
Sbjct: 319 CPNDTILDMCASPGNKTTHIAALLKNQGRLVAIDKTPTKVAQLRQRCENFGAK-VEILQT 377
Query: 320 DALKAVRR 327
D+ K + R
Sbjct: 378 DSTKLLDR 385
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Query: 421 FSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
F SFD++LLDAPCSALG RP+ F + + LR++ QR++F+ AVQL++ G +VY
Sbjct: 386 FCYESFDKILLDAPCSALGKRPQ-FVNTTSRKILRSYVPLQRKLFETAVQLLKTDGTLVY 444
Query: 481 STCTINPGENEALCA 495
STCTI ENE + A
Sbjct: 445 STCTITLAENEGIVA 459
>gi|71656502|ref|XP_816797.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70881949|gb|EAN94946.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 561
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 111/402 (27%), Positives = 160/402 (39%), Gaps = 114/402 (28%)
Query: 126 VIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVL 185
V+V+ CAEAVLRG+ V+ PGV++ G V V + ++ G G R T+L
Sbjct: 125 VVVNVGCAEAVLRGSDVFAPGVVSFVGSFVAGQEVFVGMYLQPAGASTSAGGGTDRRTLL 184
Query: 186 QGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASE-GIAVDMHNRIFQLPS---FYDVLE- 240
L +G GTA+M R I R + G+AV + PS +L+
Sbjct: 185 --------------LCVGAGTALMDRREIIRGRQNGVAVRTNWTPMAQPSKSLLSSMLDE 230
Query: 241 -------------GEIFLQNLPSIVTAHALDPQKGE---------RILDMCAAPGGKTTA 278
FLQN S+V L Q LD CAAPGGK +
Sbjct: 231 AVATLLKAGAPETSSFFLQNYSSMVAVDVLVQQFSSIDIQREGPLAFLDACAAPGGKASL 290
Query: 279 IASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDE--PN 336
+ SLL H KV Q L + +G + ++S+D P
Sbjct: 291 LLSLL------------HEKV---QGLDSSLG----------------KNDKSSDSVFPT 319
Query: 337 M----CNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKVSNEKGVERTYVSKA 392
C Y + D ++LH +S K V R +
Sbjct: 320 FTLTCCERSKARY--KRLLDLLELHF------------------GISIVKRVVRPFCGDV 359
Query: 393 DTRKNMRRMRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQ 452
+ + + QC E+ F +LLD PC+ +GLRP+L + T Q
Sbjct: 360 NKLQ----------KTQC----DEDVDSMWECEFHGILLDPPCTGMGLRPKLNSHLITPQ 405
Query: 453 SLRNHGKYQRRMFDQAVQLVRPGG--IIVYSTCTINPGENEA 492
+R+ YQR++FD V+++R G ++VYSTCTI ENEA
Sbjct: 406 GIRDSADYQRKLFDSCVKMLRRTGTSVLVYSTCTITLDENEA 447
>gi|322801564|gb|EFZ22220.1| hypothetical protein SINV_04379 [Solenopsis invicta]
Length = 463
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 109/216 (50%), Gaps = 26/216 (12%)
Query: 123 PKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRG 182
P E+IV C AVLRG+ VY PG++ + G ++ V+V + G G+ +
Sbjct: 122 PDEIIVDAICGAAVLRGSHVYAPGIIG----MPNGLIINTKVSVFA-DVTGQCKKGLIKP 176
Query: 183 TVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIF----RASEGIAVDMHNRIFQLPSFY-- 236
Y + Y+G G +R +F R G+A+ M + I ++P F
Sbjct: 177 -----------YANSNKAYLGNGILRQTRKELFCKVSRNPCGVAIIMTDVISRIPQFNIN 225
Query: 237 -DVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRS 295
+ L LQNLPSI+ + L+PQ E +LDMCAAPG KTT I+ L++ +G ++A++++
Sbjct: 226 DESLRPHALLQNLPSIICSLVLNPQPDETVLDMCAAPGNKTTHISLLMKGQGTIIALEKN 285
Query: 296 HNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNES 331
KV ++ + +K + DA KAV + S
Sbjct: 286 PGKVRRFKEKCNDRNIK---IFCYDATKAVIAREHS 318
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Query: 421 FSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
F N FDR+LLD PCSALG RP+L+ + Q LR++ QR +F AV+L++PGG +VY
Sbjct: 328 FEENYFDRILLDTPCSALGQRPQLYNTITSAQ-LRSYIPLQRSLFSVAVRLLKPGGTLVY 386
Query: 481 STCTINPGENEALCA 495
STCT+ ENE + A
Sbjct: 387 STCTVTIAENEGIIA 401
>gi|428181575|gb|EKX50438.1| hypothetical protein GUITHDRAFT_103672 [Guillardia theta CCMP2712]
Length = 311
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 91/174 (52%), Gaps = 35/174 (20%)
Query: 137 LRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQ---TDPY 193
++GAQ++ PG+ A + +GD++AV + RG V G Q TD
Sbjct: 1 MQGAQIFAPGIAAAPYSMNQGDLLAVYADTTD---------AVQRGGVTAGKQPKATDVV 51
Query: 194 YFERSGLYIGQGTAMMSRAGIF-RASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIV 252
+++G G A M+R G+F + GI + ++ P+
Sbjct: 52 IDTSKSVFLGIGRACMNRNGMFGKDPRGIGI----------------------ESFPAAF 89
Query: 253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLA 306
T+ L+P+ GER+LDMCAAPGGK+T IA L++D GEVV+ DRS +KV IQ+LA
Sbjct: 90 TSLLLEPKSGERVLDMCAAPGGKSTHIAQLMKDRGEVVSCDRSSSKVEKIQQLA 143
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 49/83 (59%), Gaps = 13/83 (15%)
Query: 422 SPN--SFDRVLLDAPCSALGLRPRLFAAEETI-----------QSLRNHGKYQRRMFDQA 468
SPN D+VLLD PCSALGLRP L A + SL YQR+M QA
Sbjct: 152 SPNMPEPDKVLLDPPCSALGLRPSLRVASNSAWSASRSSRLQADSLHQLQLYQRQMIRQA 211
Query: 469 VQLVRPGGIIVYSTCTINPGENE 491
V ++PGG +VYSTCT+NP ENE
Sbjct: 212 VMALKPGGRLVYSTCTLNPQENE 234
>gi|20094206|ref|NP_614053.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
gi|19887231|gb|AAM01983.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
Length = 356
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 84/299 (28%), Positives = 125/299 (41%), Gaps = 61/299 (20%)
Query: 38 ALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTISESQIP 97
AL P +RVNTLK +DV++ L AS R + ES P
Sbjct: 3 ALRTPVRRYTLRVNTLKADLEDVVECL--------------ASDFPDR----EVRES--P 42
Query: 98 GLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKG 157
EY V ++ GP+ ++ + V+ + AE+V GA +Y PGV+ + +G
Sbjct: 43 YSEYAVEIEVKGPYPVEGNHH------VVVADKFAAESVYVGADLYAPGVVQADPDIRRG 96
Query: 158 DVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRA 217
D V V P G L QG M R
Sbjct: 97 DRVTVVSERGHPVASGEAAL--------------------------QGREMEKR------ 124
Query: 218 SEGIAVDMHNRIFQLPSFYDV---LEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGG 274
G AV + F P + G ++ Q LPSI+ AL P+ GE ++D+CAAPGG
Sbjct: 125 DRGTAVRVDRPTFSAPKVRETEAYRRGWVYSQGLPSILAVEALSPEPGETVVDLCAAPGG 184
Query: 275 KTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESND 333
K + +A + E ++VA+DRS ++ ++ +G+ + T DA K VRR + D
Sbjct: 185 KCSHVAQITGPESKIVAIDRSAPRLERMEARLRRLGIDWVETVHGDARKVVRRLRGTAD 243
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 22/109 (20%)
Query: 383 GVERTYVSKADTRKNMRRMRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGLRP 442
G++ D RK +RR+R + D VL+D PC+ALG+RP
Sbjct: 220 GIDWVETVHGDARKVVRRLRG---------------------TADVVLVDPPCTALGVRP 258
Query: 443 RLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENE 491
+L+ E T + YQ + ++++ GG ++YSTCT+ P ENE
Sbjct: 259 KLWV-EATYEEALGLPSYQYSLLRAGYEVLKEGGRLLYSTCTLTPTENE 306
>gi|195377779|ref|XP_002047665.1| GJ11797 [Drosophila virilis]
gi|194154823|gb|EDW70007.1| GJ11797 [Drosophila virilis]
Length = 413
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 79/131 (60%), Gaps = 9/131 (6%)
Query: 200 LYIGQGTAMMSRAGIF-----RASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTA 254
+++G G +M R ++ + GIAV M + + +P+ D+ + LQNLPS+V
Sbjct: 134 IFLGVGQVLMQRHQLYNNNKEQPPSGIAVRMQSNVSGVPTLGDLSDANALLQNLPSMVCV 193
Query: 255 HALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG-LKC 313
L PQ GERILDMCAAPG KTT IA L+ D G+++A+D S +++ +Q ++G C
Sbjct: 194 RVLAPQPGERILDMCAAPGNKTTHIAELMGDVGQIIALDNSASRMRAMQ---TKLGNYDC 250
Query: 314 ITTYKLDALKA 324
I ++ DA KA
Sbjct: 251 IQAHQFDATKA 261
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 52/73 (71%)
Query: 421 FSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
F+ +SFDR+LLDAPCS LG RP+L + + + L+++ QR + QAV L+RPGG++VY
Sbjct: 275 FASSSFDRILLDAPCSGLGNRPQLCCSIKQTKVLQSYPPIQRSLLAQAVPLLRPGGVLVY 334
Query: 481 STCTINPGENEAL 493
STCTI E E L
Sbjct: 335 STCTITEAECEQL 347
>gi|325968037|ref|YP_004244229.1| Fmu (Sun) domain-containing protein [Vulcanisaeta moutnovskia
768-28]
gi|323707240|gb|ADY00727.1| Fmu (Sun) domain protein [Vulcanisaeta moutnovskia 768-28]
Length = 404
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 88/349 (25%), Positives = 148/349 (42%), Gaps = 82/349 (23%)
Query: 14 RWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKL----LAIIQ 69
R + Q+ +Y ++ + I +++ +P IRVNTLK + +++++ L + + Q
Sbjct: 16 RLDYQLYKYLLQYFSDSELQGIFESIRKPPSKYYIRVNTLKISPEELLKLLREHSVDVYQ 75
Query: 70 NSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGYEPDKPP---KEV 126
+ EA + VKG P+K P K V
Sbjct: 76 DKDLPEA-LWFPVKG----------------------------------PNKVPSARKYV 100
Query: 127 IVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQ 186
+ +K +E+V GA +YVPGV+ + V+KGD V +
Sbjct: 101 LADKKASESVYVGANLYVPGVVKMNKDVKKGDEVNIIAP--------------------- 139
Query: 187 GSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVLEGEIFL- 245
+G + G A ++ GIAV ++ +P D+ E E+ L
Sbjct: 140 -----------NGEIVAFGIAEVNGDEARSIRRGIAVKTLVSVYNMPKVRDLREYELGLF 188
Query: 246 --QNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQ 303
Q+LP+ H LDP+ G+ I+DM AAPGGKT+ I L + V A DRS NK+ +I
Sbjct: 189 YDQSLPAQWVTHILDPRPGDVIVDMNAAPGGKTSHIVQLGGGKAVVYAFDRSENKIREII 248
Query: 304 KLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSD 352
+ + +G+ + ++ + + DEP++ NS D I +D
Sbjct: 249 ENLSRLGMDSLYRVEVRDTRFL-----DIDEPDLINSVDKILIDPPCTD 292
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 52/68 (76%), Gaps = 1/68 (1%)
Query: 424 NSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTC 483
NS D++L+D PC+ +G+RPRLF + T++++++ KYQ + A +L++PGG++VYSTC
Sbjct: 279 NSVDKILIDPPCTDMGVRPRLFDMK-TMETVKSTAKYQEQFIKVAWKLLKPGGVLVYSTC 337
Query: 484 TINPGENE 491
TI P ENE
Sbjct: 338 TIPPLENE 345
>gi|302847922|ref|XP_002955494.1| hypothetical protein VOLCADRAFT_43107 [Volvox carteri f.
nagariensis]
gi|300259117|gb|EFJ43347.1| hypothetical protein VOLCADRAFT_43107 [Volvox carteri f.
nagariensis]
Length = 152
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 43/74 (58%), Positives = 55/74 (74%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G + LQNLPS+V A AL P G R+LDMCAAPGGKTT +A ++ + GE+VA+DRSH KV
Sbjct: 1 GWVMLQNLPSVVAALALCPPPGSRVLDMCAAPGGKTTLLAQIMGNLGEIVALDRSHAKVS 60
Query: 301 DIQKLAAEMGLKCI 314
+I+ L EMG C+
Sbjct: 61 EIRSLTGEMGATCV 74
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 50/75 (66%), Gaps = 1/75 (1%)
Query: 413 GRAENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLV 472
G + F P FD +LLDAPCSALGLRPRL + + LR G QRR+ D AV+L+
Sbjct: 79 GSPRPAPSFPPEYFDHILLDAPCSALGLRPRL-QQQSSAAYLRQCGAAQRRLGDAAVRLL 137
Query: 473 RPGGIIVYSTCTINP 487
R GG +VYSTCTINP
Sbjct: 138 RTGGSLVYSTCTINP 152
>gi|157870714|ref|XP_001683907.1| conserved hypothetical protein [Leishmania major strain Friedlin]
gi|68126974|emb|CAJ05308.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 708
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 117/467 (25%), Positives = 174/467 (37%), Gaps = 134/467 (28%)
Query: 123 PKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWG------ 176
P ++V AEAVLRG+ +Y PG++ S G+ V+ VE+ G
Sbjct: 163 PLVLVVDTGAAEAVLRGSDLYAPGIVTASRPFHAGERAVVAFYVERVAGTGDEAQNGSAE 222
Query: 177 ------LGITRGTVLQGSQTDPYYFE---------------RSGLY--IGQG-TAMMSRA 212
+ G L Q +P + RS IG G T M +
Sbjct: 223 APCRLVCALPTGATLSAEQFEPLDMDVDYQDKHQQVDMLAGRSTFLVCIGSGVTCMEWKT 282
Query: 213 GIFRASEGIAVDMH-----------------------------NRIFQLPSFYDVLEGE- 242
+ R+ G A+ M + P V EGE
Sbjct: 283 VMSRSVHGTALRMEWTPQGQPSRATLRALLGITKGTEDSNARSSTPLPQPPSSGVEEGEE 342
Query: 243 -----IFLQNLPSIVT-----------------AHALDPQKGER-----ILDMCAAPGGK 275
FLQN S+V H+ D +G ILD CAAPGGK
Sbjct: 343 RAADVFFLQNYSSMVPVALLVQHLSPAALRRAWTHSDDADQGRSPVPCTILDACAAPGGK 402
Query: 276 TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEP 335
T+ + SLL++ E +R+ I +A + + +++ + R + E
Sbjct: 403 TSLLLSLLQERAEQ---ERTAMAEAAIPLPSATVATE---PFRVVCCERSRPRQEQ---- 452
Query: 336 NMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKVSNEKGVERTYVSKA--- 392
+ S H PS A+ LN + V+ YV++
Sbjct: 453 ----------LMSLLHRHFASHLAAPS-ASPSLN----------STPAVDVPYVTRVLES 491
Query: 393 ---DTRKNMRRMRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEE 449
DT K ++R G ++ S SFD VLLD PC+ +GLRP+L +
Sbjct: 492 RCVDTNKFLKRKLTE------AAGSSDGSAASHTASFDAVLLDPPCTGMGLRPKLMPHVQ 545
Query: 450 TIQSLRNHGKYQRRMFDQAVQLVR----PGGIIVYSTCTINPGENEA 492
+I S++ YQR++FD ++ +R G+IVYSTCT ENEA
Sbjct: 546 SIASIQRSADYQRKLFDSCIRHIRGSPTSPGVIVYSTCTTTLEENEA 592
>gi|146088942|ref|XP_001466187.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|134070289|emb|CAM68626.1| conserved hypothetical protein [Leishmania infantum JPCM5]
Length = 708
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 116/462 (25%), Positives = 176/462 (38%), Gaps = 127/462 (27%)
Query: 123 PKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWG------ 176
P ++V AEAVLRG+ +Y PG++ S G+ V+ VE+ G
Sbjct: 166 PLVLVVDAGAAEAVLRGSDLYAPGIVTASRPFHAGERAVVAFYVERVADTGDEAQNGSAE 225
Query: 177 ------LGITRGTVLQGSQTDPYYFE---------------RSGLYIGQGTAMMS---RA 212
+ G L Q +P + RS + G+ +M +
Sbjct: 226 APRRLVCALPTGATLPAEQFEPLDMDLDYQDKHQQVGALAGRSTFLVCIGSGVMCMEWKT 285
Query: 213 GIFRASEGIAVDM--------------------------HNRI---FQLPSFYDVLEGE- 242
+ R++ G A+ M H R P V EGE
Sbjct: 286 VMSRSTHGTALQMEWTPQGQPSRATLRALLGIMKDTEDSHARTSTPLPQPPSPGVEEGEE 345
Query: 243 -----IFLQNLPSIVT-----------------AHALDPQKGER-----ILDMCAAPGGK 275
FLQN S+V H+ D +G ILD CAAPGGK
Sbjct: 346 RAADAFFLQNYSSMVPVALLVQHLSPAALRRAWTHSDDADQGRSPAPCTILDACAAPGGK 405
Query: 276 TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEP 335
T+ + SLL++ E +R+ I +A + + + R + E
Sbjct: 406 TSLLLSLLQERAEQ---ERTAMAEAAIPLPSATEPFRVVCCER------SRPRQE----- 451
Query: 336 NMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKVSNEKGVERTYVSKA-DT 394
+ ++ + H PS A+ LN + ++ V R S DT
Sbjct: 452 QLMRLLHRHFAS---------HLAAPS-ASPSLNSTSA-----ADVPYVTRVLESHCVDT 496
Query: 395 RKNMRRMRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSL 454
K ++R G ++ S +SFD VLLD PC+ +GLRP+L ++I S+
Sbjct: 497 NKFLKRKLTE------AAGSSDGSAASHTDSFDAVLLDPPCTGMGLRPKLMPHAQSIASI 550
Query: 455 RNHGKYQRRMFDQAVQLVR--PG--GIIVYSTCTINPGENEA 492
+ YQR++FD ++ +R P G+IVYSTCT ENEA
Sbjct: 551 QRSADYQRKLFDSCIRHIRGSPASPGVIVYSTCTTTLEENEA 592
>gi|300123975|emb|CBK25246.2| unnamed protein product [Blastocystis hominis]
Length = 305
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 76/239 (31%), Positives = 113/239 (47%), Gaps = 34/239 (14%)
Query: 282 LLRDEGEVVAVDRSHNKVMD-IQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNS 340
L++D+G V+ +DRS K +D + + + G + + LD K V S +E
Sbjct: 2 LMQDKGLVLGMDRSRKKAIDNLLAIKQKFGYQSLQIRYLDMTKGVM----SEEEEQKLYR 57
Query: 341 KDNNYITSQTSD-------SMKLHKEVPSIAAEGLNGDKSCKEK--------VSNEKGV- 384
+ +Y +D S K++ I + K ++K V E +
Sbjct: 58 EGADYRIPAGNDAAVSPLESKSFEKKLRRIMKQKERKQKQREQKQGNASVSSVEKESAIP 117
Query: 385 -ERTYVSKADTRKNMRRMRNG--------PGRNQCLGGRAENSK---GFSPNSFDRVLLD 432
E + KA+ + +R+ + P ++ L G S G+ FDRVLLD
Sbjct: 118 AELCHSQKAEHNQQEKRLLDSTLSLAIPLPLQHLLLAGIIAGSAKLPGYPREIFDRVLLD 177
Query: 433 APCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENE 491
PCSALGLRPRL E T+ L + YQR+ + AVQL+R GG +VYSTCTI+P ENE
Sbjct: 178 PPCSALGLRPRLLH-EVTMNDLMGYRNYQRQFIEVAVQLLRVGGTLVYSTCTIDPMENE 235
>gi|398016596|ref|XP_003861486.1| hypothetical protein, conserved [Leishmania donovani]
gi|322499712|emb|CBZ34786.1| hypothetical protein, conserved [Leishmania donovani]
Length = 708
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 115/462 (24%), Positives = 176/462 (38%), Gaps = 127/462 (27%)
Query: 123 PKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWG------ 176
P ++V AEAVLRG+ +Y PG++ S G+ V+ VE+ G
Sbjct: 166 PLVLVVDAGAAEAVLRGSDLYAPGIVTASRPFHAGERAVVAFYVERVADTGDEAQNGSAE 225
Query: 177 ------LGITRGTVLQGSQTDPYYFE---------------RSGLYIGQGTAMMS---RA 212
+ G L Q +P + RS + G+ +M +
Sbjct: 226 APRRLVCALPTGATLPAEQFEPLDMDLDYQDKHQQVGALAGRSTFLVCIGSGVMCMEWKT 285
Query: 213 GIFRASEGIAVDM--------------------------HNRI---FQLPSFYDVLEGE- 242
+ R++ G A+ M H R P V EGE
Sbjct: 286 VMSRSTHGTALQMEWTPQGQPSRATLRALLGIMKDTEDSHARTSTPLPQPPSPGVEEGEE 345
Query: 243 -----IFLQNLPSIVT-----------------AHALDPQKGER-----ILDMCAAPGGK 275
FLQN S+V H+ D +G ILD CAAPGGK
Sbjct: 346 RAADAFFLQNYSSMVPVALLVQHLSSAALRRAWTHSDDADQGRSPAPCTILDACAAPGGK 405
Query: 276 TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEP 335
T+ + SLL++ E +R+ I +A + + + R + E
Sbjct: 406 TSLLLSLLQERAEQ---ERTAMAEAAIPLPSATEPFRVVCCER------SRPRQE----- 451
Query: 336 NMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKVSNEKGVERTYVSKA-DT 394
+ ++ + H PS A+ LN + ++ V R S DT
Sbjct: 452 QLMRLLHRHFAS---------HLAAPS-ASPSLNSTSA-----ADVPYVTRVLESHCVDT 496
Query: 395 RKNMRRMRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSL 454
K ++R G ++ S +SFD VL+D PC+ +GLRP+L ++I S+
Sbjct: 497 NKFLKRKLTE------AAGSSDGSAASHTDSFDAVLIDPPCTGMGLRPKLMPHAQSIASI 550
Query: 455 RNHGKYQRRMFDQAVQLVR--PG--GIIVYSTCTINPGENEA 492
+ YQR++FD ++ +R P G+IVYSTCT ENEA
Sbjct: 551 QRSADYQRKLFDSCIRHIRGSPASPGVIVYSTCTTTLEENEA 592
>gi|300122180|emb|CBK22754.2| unnamed protein product [Blastocystis hominis]
Length = 244
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 89/172 (51%), Gaps = 18/172 (10%)
Query: 156 KGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIF 215
KG+ V + V + L G LG+ G + IG+G ++R+ +F
Sbjct: 7 KGERVCIVVNICNTNLPRGSDLGLYDG---------------KNIIIGEGVLELTRSEVF 51
Query: 216 RASEGIAVD-MHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGG 274
G+A+D +H F LP + L ++ +QN PS++T+ LDPQ GE ILD CAAPG
Sbjct: 52 SLESGLAIDQIHRSSFDLPPL-ESLPNDLLMQNFPSLITSRILDPQPGEAILDCCAAPGN 110
Query: 275 KTTAIASLLRDEGEVVAVDRSHNKVMD-IQKLAAEMGLKCITTYKLDALKAV 325
K + + L++D+G V+ +DRS K +D + + + G + + LD K +
Sbjct: 111 KWSHLCMLMQDKGLVLGMDRSRKKAIDNLLAIKQKFGYQSLQIRYLDMTKHL 162
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 39/70 (55%), Positives = 46/70 (65%), Gaps = 1/70 (1%)
Query: 420 GFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIV 479
G+ FDRVLLD PCSALGLRPRL E T+ L + YQR+ + AVQL+R GG +V
Sbjct: 176 GYPREIFDRVLLDPPCSALGLRPRLLH-EVTMNDLMGYRNYQRQFIEVAVQLLRVGGTLV 234
Query: 480 YSTCTINPGE 489
YSTC GE
Sbjct: 235 YSTCRREGGE 244
>gi|221480789|gb|EEE19218.1| PUA domain-containing, nucleolar protein, putative [Toxoplasma
gondii GT1]
Length = 613
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 72/127 (56%), Gaps = 7/127 (5%)
Query: 179 ITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDV 238
+ RGT L+ + P ++G++ G+G + ++ GIAV+M + I
Sbjct: 322 VLRGTYLRAAL--PERVRKTGIFCGRGIIRQNLGQVYAGKPGIAVEMESAID-----LST 374
Query: 239 LEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNK 298
L + QNLPSIV H L PQ GER+LDMCAAPGGKT +A+L++ G +VAV+RS +
Sbjct: 375 LPACLVAQNLPSIVVGHVLSPQPGERVLDMCAAPGGKTLHLATLMKGHGLIVAVERSKTR 434
Query: 299 VMDIQKL 305
++
Sbjct: 435 AEKLRSF 441
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 42/66 (63%)
Query: 426 FDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTI 485
FDRVL D PC+ALGLRPR+ T + + KYQR QL++ GG +VYSTC++
Sbjct: 481 FDRVLADVPCTALGLRPRIDFEGLTDRVVLAAAKYQREFLKSGCQLLKTGGTLVYSTCSV 540
Query: 486 NPGENE 491
+ ENE
Sbjct: 541 SRAENE 546
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 126 VIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAV 162
++V R+C +AVLRGA V+ GV+A H+ G++V V
Sbjct: 180 ILVDRRCGQAVLRGAHVFSGGVLASEPHLRVGEMVEV 216
>gi|159482044|ref|XP_001699083.1| hypothetical protein CHLREDRAFT_177717 [Chlamydomonas reinhardtii]
gi|158273146|gb|EDO98938.1| predicted protein [Chlamydomonas reinhardtii]
Length = 474
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 53/134 (39%), Positives = 77/134 (57%), Gaps = 28/134 (20%)
Query: 214 IFRASEGIAVDMHNRIFQLPS----------------FYDVLEGEIFLQNLPSIVTA--- 254
+FRA EG+A+++ +F++P Y ++ G + +NL + A
Sbjct: 120 MFRAREGLALELVQPVFRVPPAVSECRARGAGAGRFCHYRMVPGSV--RNLVRVERAAPG 177
Query: 255 --HALDPQK-----GERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAA 307
HA +P + G R+LDMCAAPGGKTT +A+L+ D GEVVA DR+H KV ++ LA
Sbjct: 178 LGHAAEPAQPGLAPGMRVLDMCAAPGGKTTLMAALMGDVGEVVAFDRTHAKVAEVVALAR 237
Query: 308 EMGLKCITTYKLDA 321
EMG CI +K+DA
Sbjct: 238 EMGATCIKAHKMDA 251
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 53/73 (72%), Gaps = 1/73 (1%)
Query: 421 FSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
F P SFD +LLDAPCSALGLRPRL + LR QRR+ D AV+L+R GG +VY
Sbjct: 313 FPPESFDALLLDAPCSALGLRPRLQQQAGALY-LRQCAAAQRRLVDGAVRLLRVGGAMVY 371
Query: 481 STCTINPGENEAL 493
STCTINPGENEA+
Sbjct: 372 STCTINPGENEAV 384
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 36/53 (67%)
Query: 9 YSPLLRWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVI 61
++P + W+P+VE Y A G + F R + AL RP +C+RVNTL+TT ++V+
Sbjct: 12 FAPKVAWDPEVEAYLRGALGDERFERAAAALCRPPRTTCLRVNTLRTTAEEVV 64
>gi|237845131|ref|XP_002371863.1| NOL1/NOP2/sun family protein [Toxoplasma gondii ME49]
gi|211969527|gb|EEB04723.1| NOL1/NOP2/sun family protein [Toxoplasma gondii ME49]
gi|221501454|gb|EEE27230.1| PUA domain-containing, nucleolar protein, putative [Toxoplasma
gondii VEG]
Length = 613
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 72/127 (56%), Gaps = 7/127 (5%)
Query: 179 ITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDV 238
+ RGT L+ + P ++G++ G+G + ++ GIAV+M + I
Sbjct: 322 VLRGTYLRAAL--PERVRKTGIFCGRGIIRQNLGQVYAGKPGIAVEMESAID-----LST 374
Query: 239 LEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNK 298
L + QNLPSIV H L PQ GER+LDMCAAPGGKT +A+L++ G +VAV+RS +
Sbjct: 375 LPACLVAQNLPSIVVGHVLSPQPGERVLDMCAAPGGKTLHLATLMKGHGLIVAVERSKTR 434
Query: 299 VMDIQKL 305
++
Sbjct: 435 AEKLRSF 441
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 42/66 (63%)
Query: 426 FDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTI 485
FDRVL D PC+ALGLRPR+ T + + KYQR QL++ GG +VYSTC++
Sbjct: 481 FDRVLADVPCTALGLRPRIDFEGLTDRVVLAAAKYQREFLKSGCQLLKTGGTLVYSTCSV 540
Query: 486 NPGENE 491
+ ENE
Sbjct: 541 SRAENE 546
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 126 VIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAV 162
++V R+C +AVLRGA V+ GV+A H+ G++V V
Sbjct: 180 ILVDRRCGQAVLRGAHVFSGGVLASEPHLRVGEMVEV 216
>gi|159040978|ref|YP_001540230.1| Fmu (Sun) domain-containing protein [Caldivirga maquilingensis
IC-167]
gi|157919813|gb|ABW01240.1| Fmu (Sun) domain protein [Caldivirga maquilingensis IC-167]
Length = 398
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/282 (24%), Positives = 126/282 (44%), Gaps = 63/282 (22%)
Query: 37 KALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTISESQI 96
+++ +P +RVNTLK +TD++++ RL+ I+ +
Sbjct: 43 ESIRKPPRRYYVRVNTLKVSTDELLR----------------------RLKEHGITAYRD 80
Query: 97 PGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEK 156
L+ +++ GP+ + + V+ + +E+V G+ +Y PGV+ + +
Sbjct: 81 EVLDEAIWLPTEGPNRVGASR------RYVVADKYASESVYLGSNLYGPGVLYMPNDIHA 134
Query: 157 GDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFR 216
GD V V P +G + G A ++ + R
Sbjct: 135 GD----EVNVVSP----------------------------NGDVVALGVAKINASEFRR 162
Query: 217 ASEGIAVDMHNRIFQLPSFYDVLE---GEIFLQNLPSIVTAHALDPQKGERILDMCAAPG 273
GI V+ +++LP D+ E G + Q+LP+ +DP E I+D+C+APG
Sbjct: 163 GFRGIVVETTESVYRLPKLRDLDEWRFGLFYEQSLPAQWVGRLIDPGPNETIIDLCSAPG 222
Query: 274 GKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCIT 315
GK T +A L ++ ++AVDRS +KV I+ AA +G++ +T
Sbjct: 223 GKATHVAQLSGNKAIIIAVDRSWSKVRQIEGNAARLGVRLMT 264
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 427 DRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTIN 486
D+VL+D PCS G+RP+L+ T+ L N YQR+ A L++P G ++YSTCT+
Sbjct: 284 DKVLIDPPCSDAGVRPKLYY-RLTMTDLINLVAYQRQFIKVAYSLLKPNGSLIYSTCTLP 342
Query: 487 PGENE 491
P ENE
Sbjct: 343 PMENE 347
>gi|429216799|ref|YP_007174789.1| tRNA/rRNA cytosine-C5-methylase [Caldisphaera lagunensis DSM 15908]
gi|429133328|gb|AFZ70340.1| tRNA/rRNA cytosine-C5-methylase [Caldisphaera lagunensis DSM 15908]
Length = 390
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/299 (23%), Positives = 135/299 (45%), Gaps = 65/299 (21%)
Query: 34 RISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTISE 93
+I L +P +RVNTLK T ++ L I++ G I
Sbjct: 35 KIINLLIKPPTKFYLRVNTLKITRNEY----LNILKERG------------------IKF 72
Query: 94 SQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSH 153
+ ++Y ++ + SGP+ I Y+ K++ V++ +E++ G+ +Y+PG++ +
Sbjct: 73 YKDENIDYAIYAQISGPYEIPI-YD-----KKIYVNKYASESIYLGSNLYIPGILK-ADK 125
Query: 154 VEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAG 213
++KGD V + F R+ + + G +++
Sbjct: 126 IKKGDKVTI--------------------------------FNRNDIPLASGISIIDWED 153
Query: 214 IFRASEGIAVDMHNRIFQLPSFYDV---LEGEIFLQNLPSIVTAHALDPQKGERILDMCA 270
I+R +G+AV + + +++ P ++ EG I+ Q+LPS+ A DP++G I+DM A
Sbjct: 154 IYRLKKGLAVIVEDSVYKSPKIRELPGFEEGYIYSQSLPSMWVAELADPKEGSIIIDMNA 213
Query: 271 APGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKN 329
APGGK IA + ++A+DR +K D+ + +G + D+ A + N
Sbjct: 214 APGGKVGNIAQKVGKNSRIIAIDRP-SKTNDLTEKMKRLGYDWVEVIGGDSRYATQELN 271
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 46/68 (67%), Gaps = 7/68 (10%)
Query: 427 DRVLLDAPCSALGLRPRLFAAEETIQSLRNH---GKYQRRMFDQAVQLVRPGGIIVYSTC 483
D VL+D PC+ LG+ P+L +SLR+ +YQ++ ++A +L++PGGI++YSTC
Sbjct: 277 DLVLIDPPCTNLGVIPKLSDK----KSLRDSIILSRYQKQFINEAFKLLKPGGILMYSTC 332
Query: 484 TINPGENE 491
T+ ENE
Sbjct: 333 TLTYTENE 340
>gi|307596216|ref|YP_003902533.1| Fmu (Sun) domain-containing protein [Vulcanisaeta distributa DSM
14429]
gi|307551417|gb|ADN51482.1| Fmu (Sun) domain protein [Vulcanisaeta distributa DSM 14429]
Length = 406
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 87/346 (25%), Positives = 146/346 (42%), Gaps = 76/346 (21%)
Query: 14 RWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGS 73
R + Q+ YF++ + I +++ RP IRVNTL+ + +++++ L
Sbjct: 18 RLDYQLYRYFLQYFSESELESIFESIRRPPGRYYIRVNTLRISPEELMRLL-------RE 70
Query: 74 SEADVASSVKGRLQNGTISESQIPGLEYVVF-VKGSGPHTIDYGYEPDKPP---KEVIVS 129
DV + +P E + F VKG P+K P K V+
Sbjct: 71 RSIDVYP------------DEYLP--EALWFPVKG-----------PNKIPSARKYVLAD 105
Query: 130 RKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQ 189
++ AE+V GA +YVPGV+ + +GD V V
Sbjct: 106 KRAAESVYVGANLYVPGVVRMDEEIRRGDEVNVIAP------------------------ 141
Query: 190 TDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVLEGEIFL---Q 246
+G + G A +S I GIAV ++++P ++ E E+ L Q
Sbjct: 142 --------NGEVVAFGIAEVSNDNIKTTRHGIAVKTLVSVYEMPKVREMREYELGLFYDQ 193
Query: 247 NLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLA 306
+LP+ H +DP+ E I+DM AAPGGKT+ + L + V A DRS KV ++ ++
Sbjct: 194 SLPAQWVGHVVDPKPNEVIIDMNAAPGGKTSHVIQLSGGKAIVHAFDRSEGKVREMIEIL 253
Query: 307 AEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSD 352
+G+ + Y+++ + D P++ S D I +D
Sbjct: 254 NRLGMNGL--YRVEVRDT---RYLDIDRPDLIGSADKVLIDPPCTD 294
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 47/67 (70%), Gaps = 1/67 (1%)
Query: 425 SFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCT 484
S D+VL+D PC+ +G+RPRLF + T+ + YQR+ A +L+RPGGI++YSTCT
Sbjct: 282 SADKVLIDPPCTDMGVRPRLFDVK-TMDLVMAMSNYQRQFIKVAWRLLRPGGILIYSTCT 340
Query: 485 INPGENE 491
I P ENE
Sbjct: 341 IPPLENE 347
>gi|401410959|ref|XP_003884927.1| putative NOL1/NOP2/sun family protein [Neospora caninum Liverpool]
gi|325119346|emb|CBZ54899.1| putative NOL1/NOP2/sun family protein [Neospora caninum Liverpool]
Length = 631
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 72/126 (57%), Gaps = 8/126 (6%)
Query: 183 TVLQGSQTD---PYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVL 239
+VLQG+ P ++G++ G+G + ++ G+A++M +R L L
Sbjct: 339 SVLQGTYLRAQLPERVRKTGIFCGRGILRQNMRQVYAEKTGVAIEM-DRAVDLSRLPPCL 397
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
QNLPSIV H L PQ GER+LDMCAAPGGKT +A+L++ +G +VAV+RS +
Sbjct: 398 ----VAQNLPSIVVGHVLAPQPGERVLDMCAAPGGKTLHLATLMKGQGHIVAVERSKTRA 453
Query: 300 MDIQKL 305
++
Sbjct: 454 QKLRSF 459
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 48/77 (62%)
Query: 415 AENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRP 474
AE S G +FDRVL D PC+ALGLRPRL T + + + +YQR QL++
Sbjct: 488 AEASPGRRLGNFDRVLADVPCTALGLRPRLDFDGLTDRVVLSAAEYQREFLQSGCQLLKT 547
Query: 475 GGIIVYSTCTINPGENE 491
GG +VYSTC+I+ ENE
Sbjct: 548 GGTLVYSTCSISRAENE 564
Score = 42.0 bits (97), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 126 VIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAV 162
++V R+C +AVLRGA V+ GV+A H++ G+ V V
Sbjct: 199 ILVDRRCGQAVLRGAHVFAKGVLASEPHLKAGERVDV 235
>gi|347523590|ref|YP_004781160.1| Fmu (Sun) domain containing protein [Pyrolobus fumarii 1A]
gi|343460472|gb|AEM38908.1| Fmu (Sun) domain protein [Pyrolobus fumarii 1A]
Length = 386
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 102/215 (47%), Gaps = 45/215 (20%)
Query: 99 LEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGD 158
LE ++ GP + + K V+V ++ AE+VL GA VY PGV+ V KGD
Sbjct: 71 LEEAIWFPVEGPFRVP------RVDKRVVVDKRTAESVLLGAHVYAPGVIDMEG-VSKGD 123
Query: 159 VVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRAS 218
V++ E +G+ + G A MS +
Sbjct: 124 --EVNIVAE------------------------------NGVVVAYGVAEMSWDEVREKR 151
Query: 219 EGIAVDMHNRIFQLPSFYDV---LEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGK 275
G+AV + F+ PS ++ G I+ Q+LP++ + L+PQ GE ++DMCAAPGGK
Sbjct: 152 RGLAVRVVVSRFRAPSTRELSVWKRGLIYEQSLPAMWASRLLEPQPGEIVVDMCAAPGGK 211
Query: 276 TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG 310
T + L R + +VA+D S +K I+++ E+G
Sbjct: 212 TGHLVELTRGKARIVAIDHSRSK---IRRMVEELG 243
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 48/68 (70%), Gaps = 1/68 (1%)
Query: 427 DRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTIN 486
DRVLLD PC+ALG+ P+++ +T + +RN +YQ + A ++++PGG +VYSTCT+
Sbjct: 271 DRVLLDPPCTALGVIPKVYD-RKTWRDVRNAAEYQWQFVKVAAKILKPGGRLVYSTCTLT 329
Query: 487 PGENEALC 494
ENEA+
Sbjct: 330 VEENEAIV 337
>gi|348549808|ref|XP_003460725.1| PREDICTED: putative methyltransferase NSUN6-like, partial [Cavia
porcellus]
Length = 217
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/71 (53%), Positives = 52/71 (73%), Gaps = 1/71 (1%)
Query: 421 FSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
FSP SFDR+LLDAPCS +G RP + A T++ + ++ QR++F A QL++PGG++VY
Sbjct: 53 FSPESFDRILLDAPCSGMGQRPNM-ACTWTLKEVMSYQPLQRKLFSVAAQLLKPGGMLVY 111
Query: 481 STCTINPGENE 491
STCTI ENE
Sbjct: 112 STCTITLAENE 122
>gi|284047695|ref|YP_003398034.1| sun protein [Acidaminococcus fermentans DSM 20731]
gi|283951916|gb|ADB46719.1| sun protein [Acidaminococcus fermentans DSM 20731]
Length = 446
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 66/92 (71%), Gaps = 3/92 (3%)
Query: 232 LPSFYDVLEG---EIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
LPS D++EG +I++Q+ S++ A LDPQ GER+LD+C+APGGKTT +A ++D+GE
Sbjct: 225 LPSLDDLVEGFGPDIYIQDESSMLDAAVLDPQPGERVLDLCSAPGGKTTHLAQKMQDQGE 284
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
++A+D +K+ +++ A +G+ CI T K D
Sbjct: 285 ILALDLYDHKLDLVRENARRLGIHCIRTEKQD 316
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 54/109 (49%), Gaps = 11/109 (10%)
Query: 388 YVSKAD-TRKNMRRMRNGPGRNQCLGGRAENSKGFSP---NSFDRVLLDAPCSALGLRPR 443
Y K D R+N RR+ C+ ++ F P N+ RVL+DAPCS LG+ R
Sbjct: 291 YDHKLDLVRENARRLGI-----HCIRTEKQDGTVFVPEWENTAHRVLVDAPCSGLGVLNR 345
Query: 444 LFAAEETIQ--SLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGEN 490
A T + SL Q+++ + V PGG ++YSTCT+ EN
Sbjct: 346 RAEARWTKEERSLSQFPPLQKKILANGARYVMPGGRLLYSTCTLEQDEN 394
>gi|109088363|ref|XP_001094721.1| PREDICTED: hypothetical protein LOC706352 [Macaca mulatta]
Length = 323
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Query: 421 FSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
F P SFDR+LLDAPCS +G RP + A +++ L ++ QR++F AVQL++P G++VY
Sbjct: 166 FLPESFDRILLDAPCSGMGQRPNM-ACTWSLKELASYQPLQRKLFTAAVQLLKPEGVLVY 224
Query: 481 STCTINPGENEALCA 495
STCTI ENE A
Sbjct: 225 STCTITLAENEEQVA 239
>gi|297618702|ref|YP_003706807.1| RNA methylase, NOL1/NOP2/sun family [Methanococcus voltae A3]
gi|297377679|gb|ADI35834.1| RNA methylase, NOL1/NOP2/sun family [Methanococcus voltae A3]
Length = 322
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 56/84 (66%)
Query: 239 LEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNK 298
L G F+Q++ S+V AL+PQK ERILDMCAAPGGKTT IA LL +EG + AV+ + N+
Sbjct: 112 LYGYYFMQSISSMVPVIALNPQKNERILDMCAAPGGKTTHIAQLLENEGVIFAVEVNKNR 171
Query: 299 VMDIQKLAAEMGLKCITTYKLDAL 322
+ + MG+K + T D++
Sbjct: 172 IRSLTSNVNRMGIKDVVTINTDSV 195
>gi|227830733|ref|YP_002832513.1| Fmu (Sun) domain-containing protein [Sulfolobus islandicus
L.S.2.15]
gi|229581707|ref|YP_002840106.1| Fmu (Sun) domain-containing protein [Sulfolobus islandicus
Y.N.15.51]
gi|284998246|ref|YP_003420014.1| Fmu (Sun) domain-containing protein [Sulfolobus islandicus L.D.8.5]
gi|385773703|ref|YP_005646270.1| Fmu (Sun) domain-containing protein [Sulfolobus islandicus HVE10/4]
gi|385776338|ref|YP_005648906.1| Fmu (Sun) domain-containing protein [Sulfolobus islandicus REY15A]
gi|227457181|gb|ACP35868.1| Fmu (Sun) domain protein [Sulfolobus islandicus L.S.2.15]
gi|228012423|gb|ACP48184.1| Fmu (Sun) domain protein [Sulfolobus islandicus Y.N.15.51]
gi|284446142|gb|ADB87644.1| Fmu (Sun) domain protein [Sulfolobus islandicus L.D.8.5]
gi|323475086|gb|ADX85692.1| Fmu (Sun) domain protein [Sulfolobus islandicus REY15A]
gi|323477818|gb|ADX83056.1| Fmu (Sun) domain protein [Sulfolobus islandicus HVE10/4]
Length = 339
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 76/299 (25%), Positives = 125/299 (41%), Gaps = 77/299 (25%)
Query: 26 AYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVKGR 85
YG ++ + A+ +P+ +RVNTLKT+ + +++KL + EA
Sbjct: 4 VYG-EYLNDFLDAIRKPNPRLYVRVNTLKTSVESILEKLPHFKLDEDFKEA--------- 53
Query: 86 LQNGTISESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVP 145
++ + GP+ I+ +VIV +K AE+V+ GA VY P
Sbjct: 54 -----------------IYTEIKGPNEINIR------QNKVIVDKKTAESVMLGANVYKP 90
Query: 146 GVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIGQG 205
G+ + K +V V E P +G + G+ TD
Sbjct: 91 GLKRVVINDPKDKMVTVYSDHEIPVAEGKY----------YGTNTD-------------- 126
Query: 206 TAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVLE---GEIFLQNLPSIVTAHALDPQKG 262
+ V++ N ++ P D+ E G I++Q S+ AH LDPQ
Sbjct: 127 ---------------LIVEVTNSLYTSPKLADLSELKNGLIYVQGKASMYVAHLLDPQPN 171
Query: 263 ERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
E+I+DM A GGK T I L +++ D + KV ++ L +MG++ I YK D+
Sbjct: 172 EKIVDMTAYAGGKLTHIYQ-LEPRVKLIGFDHTEKKVEKLRDLVNKMGMR-IEIYKADS 228
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 64/109 (58%), Gaps = 12/109 (11%)
Query: 394 TRKNMRRMRNGPGRNQCLGGRAENSKG--------FSPNSFDRVLLDAPCSALGLRPRLF 445
T K + ++R+ + +G R E K ++ D+V++D PCSALG+RP+L+
Sbjct: 203 TEKKVEKLRDLVNK---MGMRIEIYKADSRYLYEDYNIRDVDKVIIDPPCSALGIRPKLY 259
Query: 446 AAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEALC 494
++T Q + N KYQ++ + A ++++ G+++YSTCT+ ENE +
Sbjct: 260 D-KKTEQDILNFHKYQKQFLNSAYKILKKNGVVIYSTCTVTTWENEKVI 307
>gi|431794643|ref|YP_007221548.1| ribosomal RNA small subunit methyltransferase RsmB
[Desulfitobacterium dichloroeliminans LMG P-21439]
gi|430784869|gb|AGA70152.1| ribosomal RNA small subunit methyltransferase RsmB
[Desulfitobacterium dichloroeliminans LMG P-21439]
Length = 453
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 65/106 (61%), Gaps = 3/106 (2%)
Query: 216 RASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGK 275
R E + ++ I +LPSF EG +Q+ S + AH L+PQ+G+R+LD+CAAPGGK
Sbjct: 211 RVPESLLIEDFGSIERLPSFQ---EGLFTVQDESSQLIAHVLNPQRGQRVLDVCAAPGGK 267
Query: 276 TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
TT +A + +EGE+ A D +KV I++LA +G+ I DA
Sbjct: 268 TTHLAQRMENEGEIQAFDLHPHKVKIIEELAQRLGITIIHAQAGDA 313
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 46/84 (54%), Gaps = 8/84 (9%)
Query: 412 GGRAENSKGFSPNSFDRVLLDAPCSALGL-----RPRLFAAEETIQSLRNHGKYQRRMFD 466
G A +G ++ +VL+DAPCS LG+ R EE I+SL + Q + +
Sbjct: 310 AGDARELQGIGNSTCHKVLVDAPCSGLGVIRRRADMRWHKTEEEIKSL---PELQLALLE 366
Query: 467 QAVQLVRPGGIIVYSTCTINPGEN 490
+A Q V GG +VYSTCTI P EN
Sbjct: 367 RAAQCVALGGELVYSTCTIEPEEN 390
>gi|148241673|ref|YP_001226830.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
RCC307]
gi|147849983|emb|CAK27477.1| Ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
RCC307]
Length = 454
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 63/111 (56%)
Query: 223 VDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASL 282
+ + +R LP EG+ +Q+ + A LDP+ G+R+LD CAAPGGKTT IA L
Sbjct: 237 LTLTSRPGPLPQLAGFSEGQWCVQDRAAQRIAPLLDPKPGQRVLDACAAPGGKTTHIAEL 296
Query: 283 LRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESND 333
+ D+GEVVAVD + ++ + A +GL CI T DA + ES D
Sbjct: 297 MGDQGEVVAVDVAPRRLQQVSANAERLGLSCIRTEAADATDLTDWEAESFD 347
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 415 AENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQS--LRNHGKYQRRMFDQAVQLV 472
A + + SFDRVLLD PCS LG R A ++ + Q ++ +Q +L+
Sbjct: 335 ATDLTDWEAESFDRVLLDVPCSGLGTLARHADARWNLKPDGIEELVGLQHQLLEQGARLL 394
Query: 473 RPGGIIVYSTCTINPGEN 490
+P G +VY+TCT++P EN
Sbjct: 395 KPDGRLVYATCTVHPAEN 412
>gi|157692254|ref|YP_001486716.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus pumilus
SAFR-032]
gi|157681012|gb|ABV62156.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus pumilus
SAFR-032]
Length = 447
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 45/100 (45%), Positives = 61/100 (61%), Gaps = 3/100 (3%)
Query: 225 MHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLR 284
M I PSF EG + +Q+ S++ A ALDPQ GE +LD CAAPGGK+T IA +
Sbjct: 218 MKGSIVSTPSFQ---EGYVTIQDESSMLVARALDPQPGETVLDACAAPGGKSTHIAERMN 274
Query: 285 DEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324
DEG++V++D +KV I++ A + L I LDA KA
Sbjct: 275 DEGQIVSLDLHEHKVKLIKQAAKRLNLTQIEAKALDARKA 314
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
+S SFDR+L+DAPCS G+ +P + + S R Q+ + + L++PGG
Sbjct: 318 YSEASFDRILIDAPCSGFGVIRRKPDMKYTKSPEDSAR-LAIIQQAILKETAPLLKPGGT 376
Query: 478 IVYSTCTINPGENE 491
+VYSTCT++P EN+
Sbjct: 377 LVYSTCTMDPSENQ 390
>gi|297526090|ref|YP_003668114.1| Fmu (Sun) domain-containing protein [Staphylothermus hellenicus DSM
12710]
gi|297255006|gb|ADI31215.1| Fmu (Sun) domain protein [Staphylothermus hellenicus DSM 12710]
Length = 383
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 74/278 (26%), Positives = 123/278 (44%), Gaps = 59/278 (21%)
Query: 25 RAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVKG 84
R YG+ +S + K L P +RVNT+ T D++++
Sbjct: 14 RVYGSLTYSLLDKILLPPKRL-YLRVNTMLITRDELVE---------------------- 50
Query: 85 RLQNGTISESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGAQVYV 144
L+ I+ + P +E VF++ GP+ I Y+ K+++V + AE+++ GA +Y
Sbjct: 51 LLKKRGINVKKDPYVEEAVFIELEGPNKIPV-YD-----KKIVVDKYAAESIMIGANLYR 104
Query: 145 PGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIGQ 204
PG++ E + V V G + + R V +D + R G+ +G+
Sbjct: 105 PGILRFDRFKE-NEYVNVQAT-------NGKIISVVRTLV----SSDKLKYIRKGI-VGE 151
Query: 205 GTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGER 264
+ +A R E YD+ G + Q+LP++ + LDPQ GE
Sbjct: 152 NIVSIYKAPPIRDLEE---------------YDL--GLFYPQSLPAMTVSRILDPQPGEL 194
Query: 265 ILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDI 302
I DM AAPGGKT+ + L R VVA +R+ K + +
Sbjct: 195 IFDMNAAPGGKTSHLIQLSRGRSRVVAFERNVKKALKV 232
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 7/68 (10%)
Query: 427 DRVLLDAPCSALGLRPRL---FAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTC 483
D+VL+D PC+ LG+RP++ E+T+ KYQR+ + A +V GIIVYSTC
Sbjct: 266 DKVLIDPPCTGLGVRPKIEIDIKGEDTVV----LSKYQRQFLNAASMIVARKGIIVYSTC 321
Query: 484 TINPGENE 491
T+ ENE
Sbjct: 322 TLTWEENE 329
>gi|229579627|ref|YP_002838026.1| Fmu (Sun) domain-containing protein [Sulfolobus islandicus
Y.G.57.14]
gi|228010342|gb|ACP46104.1| Fmu (Sun) domain protein [Sulfolobus islandicus Y.G.57.14]
Length = 339
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 75/299 (25%), Positives = 125/299 (41%), Gaps = 77/299 (25%)
Query: 26 AYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVKGR 85
YG ++ + A+ +P+ +RVNTLKT+ + +++KL + EA
Sbjct: 4 VYG-EYLNDFLDAIRKPNPRLYVRVNTLKTSVESILEKLPHFKLDEDFKEA--------- 53
Query: 86 LQNGTISESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVP 145
++ + GP+ I+ +VIV +K AE+V+ GA VY P
Sbjct: 54 -----------------IYTEIKGPNEINIR------QNKVIVDKKTAESVMLGANVYKP 90
Query: 146 GVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIGQG 205
G+ + K +V V E P +G + G+ TD
Sbjct: 91 GLKRVVINDPKDKMVTVYSDHEIPVAEGKY----------YGTNTD-------------- 126
Query: 206 TAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVLE---GEIFLQNLPSIVTAHALDPQKG 262
+ V++ N ++ P D+ E G I++Q S+ AH LDPQ
Sbjct: 127 ---------------LIVEVTNSLYTSPKLADLSELKNGLIYVQGKASMYVAHLLDPQPN 171
Query: 263 ERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
E+I+DM A GGK + I L +++ D + KV ++ L +MG++ I YK D+
Sbjct: 172 EKIVDMTAYAGGKLSHIYQ-LEPRVKLIGFDHTEKKVEKLRDLVNKMGMR-IEIYKADS 228
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 64/109 (58%), Gaps = 12/109 (11%)
Query: 394 TRKNMRRMRNGPGRNQCLGGRAENSKG--------FSPNSFDRVLLDAPCSALGLRPRLF 445
T K + ++R+ + +G R E K ++ D+V++D PCSALG+RP+L+
Sbjct: 203 TEKKVEKLRDLVNK---MGMRIEIYKADSRYLYEDYNIRDVDKVIIDPPCSALGIRPKLY 259
Query: 446 AAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEALC 494
++T Q + N KYQ++ + A ++++ G+++YSTCT+ ENE +
Sbjct: 260 D-KKTEQDILNFHKYQKQFLNSAYKILKKNGVVIYSTCTVTTWENEKVI 307
>gi|227827996|ref|YP_002829776.1| Fmu (Sun) domain-containing protein [Sulfolobus islandicus M.14.25]
gi|229585265|ref|YP_002843767.1| Fmu (Sun) domain-containing protein [Sulfolobus islandicus M.16.27]
gi|238620224|ref|YP_002915050.1| Fmu (Sun) domain-containing protein [Sulfolobus islandicus M.16.4]
gi|227459792|gb|ACP38478.1| Fmu (Sun) domain protein [Sulfolobus islandicus M.14.25]
gi|228020315|gb|ACP55722.1| Fmu (Sun) domain protein [Sulfolobus islandicus M.16.27]
gi|238381294|gb|ACR42382.1| Fmu (Sun) domain protein [Sulfolobus islandicus M.16.4]
Length = 339
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/299 (25%), Positives = 124/299 (41%), Gaps = 77/299 (25%)
Query: 26 AYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVKGR 85
YG ++ + A+ +P+ +RVNTLKT+ + +++ L + EA
Sbjct: 4 VYG-EYLNDFLDAIRKPNPRLYVRVNTLKTSVESILENLPHFKLDEDFKEA--------- 53
Query: 86 LQNGTISESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVP 145
++ + GP+ I+ +VIV +K AE+V+ GA VY P
Sbjct: 54 -----------------IYTEIKGPNEINIR------QNKVIVDKKTAESVMLGANVYKP 90
Query: 146 GVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIGQG 205
G+ + K +V V E P +G + G+ TD
Sbjct: 91 GLKRVVINDPKDKMVTVYSDREIPVAEGKY----------YGTNTD-------------- 126
Query: 206 TAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVLE---GEIFLQNLPSIVTAHALDPQKG 262
+ V++ N ++ P D+ E G I++Q S+ AH LDPQ
Sbjct: 127 ---------------LIVEVTNSLYTSPKLADLSELKNGLIYVQGKASMYVAHLLDPQPN 171
Query: 263 ERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
E+I+DM A GGK T I L +++ D + KV ++ L +MG++ I YK D+
Sbjct: 172 EKIVDMTAYAGGKLTHIYQ-LEPRVKLIGFDHTEKKVEKLRDLVNKMGMR-IEIYKADS 228
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 64/109 (58%), Gaps = 12/109 (11%)
Query: 394 TRKNMRRMRNGPGRNQCLGGRAENSKG--------FSPNSFDRVLLDAPCSALGLRPRLF 445
T K + ++R+ + +G R E K ++ D+V++D PCSALG+RP+L+
Sbjct: 203 TEKKVEKLRDLVNK---MGMRIEIYKADSRYLYEDYNIRDVDKVIIDPPCSALGIRPKLY 259
Query: 446 AAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEALC 494
++T Q + N KYQ++ + A ++++ G+++YSTCT+ ENE +
Sbjct: 260 D-KKTEQDILNFHKYQKQFLNSAYKILKKNGVVIYSTCTVTTWENEKVI 307
>gi|338813384|ref|ZP_08625513.1| 16S rRNA methyltransferase B [Acetonema longum DSM 6540]
gi|337274743|gb|EGO63251.1| 16S rRNA methyltransferase B [Acetonema longum DSM 6540]
Length = 450
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 65/105 (61%), Gaps = 3/105 (2%)
Query: 219 EGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTA 278
EG+ H + +PS EG +Q+ S++ AH L PQ GE I+D C APGGK+T
Sbjct: 213 EGLVCTEHPALASMPSLQ---EGLFQVQDESSMLVAHVLGPQPGEFIIDACGAPGGKSTH 269
Query: 279 IASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323
IA+L+ + G+V+A D +K+ I++ A +G+ C+ T ++DA+K
Sbjct: 270 IAALMNNSGKVLATDLYEHKLALIRENAKRLGIHCLETRQMDAVK 314
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 45/73 (61%), Gaps = 8/73 (10%)
Query: 424 NSFDRVLLDAPCSALGL---RP--RLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGII 478
N DRVL+DAPCS LG+ +P R E+ +++L + Q + + V+PGGI+
Sbjct: 321 NQADRVLVDAPCSGLGVLRRKPDSRWRKNEKLLRALPD---LQSAILHSSADCVKPGGIL 377
Query: 479 VYSTCTINPGENE 491
VYSTCTI P EN+
Sbjct: 378 VYSTCTIEPEENQ 390
>gi|332796948|ref|YP_004458448.1| Fmu (Sun) domain-containing protein [Acidianus hospitalis W1]
gi|332694683|gb|AEE94150.1| Fmu (Sun) domain protein [Acidianus hospitalis W1]
Length = 348
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 76/302 (25%), Positives = 129/302 (42%), Gaps = 77/302 (25%)
Query: 13 LRWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSG 72
L ++ V E + YG S + ++ RP+ +RVNTLKTT D+V+Q
Sbjct: 3 LDYDEFVIEELRKVYGKSLNSFLD-SIKRPNSRLYVRVNTLKTTVDEVLQ---------- 51
Query: 73 SSEADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKC 132
S+KG ++ E+ ++ + GP+ ++ +VIV +K
Sbjct: 52 --------SMKGFKKDEDFPEA--------IYAEVKGPNKLE------SLDSKVIVDKKT 89
Query: 133 AEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDP 192
AE+V+ GA VY PG+ ++ E V VS
Sbjct: 90 AESVMLGADVYPPGIKKIIAN-EGNSVEVVS----------------------------- 119
Query: 193 YYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYD---VLEGEIFLQNLP 249
+G+ + G + G F V +++ ++ P D + EG+I++Q
Sbjct: 120 ----ENGITVANGELVRLPGGKF------MVKVYSSLYSSPKLADTKEIKEGKIYVQGKA 169
Query: 250 SIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEM 309
S+ A +DPQ GE I+DM AAPGGK + I L ++ D ++ KV +++L +M
Sbjct: 170 SMYVARIIDPQPGEFIVDMTAAPGGKLSHIYQ-LEPRARIIGFDHTYKKVEKMKQLFKKM 228
Query: 310 GL 311
+
Sbjct: 229 NV 230
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Query: 427 DRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTIN 486
D+VL+D PCSALGLRP+++ ++T L N YQ++ + A ++++ GG ++YSTCT+
Sbjct: 251 DKVLIDPPCSALGLRPKVYD-KKTKTDLMNLHAYQKQFLNSAYEILKKGGEVIYSTCTVT 309
Query: 487 PGENEALC 494
ENE +
Sbjct: 310 EIENEEVV 317
>gi|255657701|ref|ZP_05403110.1| ribosomal RNA small subunit methyltransferase B [Mitsuokella
multacida DSM 20544]
gi|260849889|gb|EEX69896.1| ribosomal RNA small subunit methyltransferase B [Mitsuokella
multacida DSM 20544]
Length = 452
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 3/105 (2%)
Query: 217 ASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKT 276
A EGI V H L + + EG +Q+ S++ AH + PQ GE I+D CAAPGGKT
Sbjct: 212 APEGILVRHHG---ALDALAPLQEGRCQVQDESSMLVAHVVGPQPGEFIIDCCAAPGGKT 268
Query: 277 TAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
T +A+L+ DEG ++A D +K+ I++ AA +G++ I T ++DA
Sbjct: 269 THMAALMHDEGRILAGDIYSHKLQRIEENAARLGIQSIETEEIDA 313
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 427 DRVLLDAPCSALGLRPRLFAAE--ETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCT 484
DRVL+DAPCS LG+ R A +T Q + Q + + A + V+PGG++VYSTCT
Sbjct: 325 DRVLVDAPCSGLGVLRRKPDARWRKTQQEIAALPDLQLAILESAARAVKPGGVLVYSTCT 384
Query: 485 INPGENEALCA 495
I EN+ + +
Sbjct: 385 IELAENQGVVS 395
>gi|443323050|ref|ZP_21052061.1| ribosomal RNA small subunit methyltransferase RsmB [Gloeocapsa sp.
PCC 73106]
gi|442787231|gb|ELR96953.1| ribosomal RNA small subunit methyltransferase RsmB [Gloeocapsa sp.
PCC 73106]
Length = 451
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 87/166 (52%), Gaps = 21/166 (12%)
Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
I QLP YD +G +Q+ + + H LDPQ GE+I+D CAAPGGKTT IA L+ D GE
Sbjct: 227 IQQLPG-YD--QGWWVVQDSSAQLVTHLLDPQPGEKIIDACAAPGGKTTHIAELMGDVGE 283
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITS 348
V A+DRS ++ +Q+ + L I+ + LD+ +++ P C D + +
Sbjct: 284 VWAIDRSFKRLKKVQENLDRLQLNSISLHHLDS--------STSELPQEC---DRVLVDA 332
Query: 349 QTSDSMKLHKEVPSIAAEGLNGDKSCKEKVSNEKGVERTYVSKADT 394
S + LHK P + + E++ N ++R +++A T
Sbjct: 333 PCSGNGTLHKR-PDLRW------RQTPEEIPNLVALQRQILNQAAT 371
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 61/112 (54%), Gaps = 8/112 (7%)
Query: 383 GVERTYVSKADTRKNMRRMRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCS---ALG 439
++R++ ++N+ R++ N ++S P DRVL+DAPCS L
Sbjct: 286 AIDRSFKRLKKVQENLDRLQ----LNSISLHHLDSSTSELPQECDRVLVDAPCSGNGTLH 341
Query: 440 LRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENE 491
RP L +T + + N QR++ +QA V+PGG +VY+TCT+NP ENE
Sbjct: 342 KRPDL-RWRQTPEEIPNLVALQRQILNQAATWVKPGGKLVYATCTLNPPENE 392
>gi|163119428|ref|YP_078968.2| rRNA SAM-dependent methyltransferase RmsB [Bacillus licheniformis
DSM 13 = ATCC 14580]
gi|404489065|ref|YP_006713171.1| 16S rRNA methyltransferase B [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|423682119|ref|ZP_17656958.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus licheniformis
WX-02]
gi|52348056|gb|AAU40690.1| rRNA large subunit methyltransferase B [Bacillus licheniformis DSM
13 = ATCC 14580]
gi|145902935|gb|AAU23330.2| rRNA SAM-dependent methyltransferase RmsB [Bacillus licheniformis
DSM 13 = ATCC 14580]
gi|383438893|gb|EID46668.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus licheniformis
WX-02]
Length = 448
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 57/85 (67%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
EGE+ +Q+ S++ A AL P++GE +LD CAAPGGK+T I LL D G+VV++D +KV
Sbjct: 229 EGEVTIQDESSMLVARALGPERGETVLDACAAPGGKSTHIGELLEDTGKVVSLDLHQHKV 288
Query: 300 MDIQKLAAEMGLKCITTYKLDALKA 324
I++ A +GL I LDA KA
Sbjct: 289 KLIKEAAGRIGLSNIEARALDARKA 313
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F P FDR+L+DAPCS G+ +P L ++ S R G Q + ++ L++ GG
Sbjct: 317 FEPEQFDRILVDAPCSGFGVIRRKPDLKYSKTPEDSARLAG-IQLAILNEIAPLLKTGGT 375
Query: 478 IVYSTCTINPGENE 491
+VYSTCT++P ENE
Sbjct: 376 LVYSTCTMDPTENE 389
>gi|323141164|ref|ZP_08076065.1| ribosomal RNA small subunit methyltransferase B
[Phascolarctobacterium succinatutens YIT 12067]
gi|322414307|gb|EFY05125.1| ribosomal RNA small subunit methyltransferase B
[Phascolarctobacterium succinatutens YIT 12067]
Length = 453
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 62/96 (64%), Gaps = 3/96 (3%)
Query: 231 QLPSFYDVLEG---EIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEG 287
LPS + +L ++Q+ S++ A L PQ G R+LDMC+APGGK T +A L++D+G
Sbjct: 231 HLPSLHTLLAALPQHFYIQDESSMLVAPVLAPQPGMRVLDMCSAPGGKATHVAQLMQDKG 290
Query: 288 EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323
EV+A D +K+ I + AA +G+K + T + DAL+
Sbjct: 291 EVIACDIHEHKLELIAENAARLGMKSVKTLQNDALQ 326
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 426 FDRVLLDAPCSALGLRPRLFAAEETIQ--SLRNHGKYQRRMFDQAVQLVRPGGIIVYSTC 483
FDRVL+DAPCS LG+ R A Q L+ Q + A Q V+ GG +VYSTC
Sbjct: 335 FDRVLVDAPCSGLGVLRRRAEARWRKQRKDLKLFPPLQLAILKNAAQYVKDGGTMVYSTC 394
Query: 484 TINPGENEAL 493
TI EN L
Sbjct: 395 TIEQSENHYL 404
>gi|319646043|ref|ZP_08000273.1| YloM protein [Bacillus sp. BT1B_CT2]
gi|317391793|gb|EFV72590.1| YloM protein [Bacillus sp. BT1B_CT2]
Length = 444
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 57/85 (67%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
EGE+ +Q+ S++ A AL P++GE +LD CAAPGGK+T I LL D G+VV++D +KV
Sbjct: 225 EGEVTIQDESSMLVARALGPERGETVLDACAAPGGKSTHIGELLEDTGKVVSLDLHQHKV 284
Query: 300 MDIQKLAAEMGLKCITTYKLDALKA 324
I++ A +GL I LDA KA
Sbjct: 285 KLIKEAAGRIGLSNIEARALDARKA 309
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F P FDR+L+DAPCS G+ +P L ++ S R G Q + ++ L++ GG
Sbjct: 313 FEPEQFDRILVDAPCSGFGVIRRKPDLKYSKTPEDSARLAG-IQLAILNEIAPLLKTGGT 371
Query: 478 IVYSTCTINPGENE 491
+VYSTCT++P ENE
Sbjct: 372 LVYSTCTMDPTENE 385
>gi|197119890|ref|YP_002140317.1| 16S rRNA (5-methyl-C967)-methyltransferase [Geobacter bemidjiensis
Bem]
gi|197089250|gb|ACH40521.1| 16S rRNA (5-methyl-C967)-methyltransferase [Geobacter bemidjiensis
Bem]
Length = 448
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 64/103 (62%), Gaps = 3/103 (2%)
Query: 219 EGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTA 278
+GI ++ +I +LPSF D G +Q+ S + L P KGER+LD CAAPGGKTT
Sbjct: 215 DGIRLNQSGQITRLPSFRD---GLFTVQDESSQLAPLFLAPGKGERVLDACAAPGGKTTQ 271
Query: 279 IASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
IA L++D GE+ A D ++ K+ I++ +G+ + T+ +DA
Sbjct: 272 IAQLMQDSGEIYACDVNNKKLRLIKETCDRLGINSVRTFTMDA 314
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 418 SKGFSPNSFDRVLLDAPCSALGLRPRLFAAE--ETIQSLRNHGKYQRRMFDQAVQLVRPG 475
S +F R+L+DAPCS LG+ R + ++ L + Q + + + + P
Sbjct: 318 SNAIKETTFHRILVDAPCSGLGVIRRNPEGKWSKSGDDLLQLARTQVSILENLCRYLEPK 377
Query: 476 GIIVYSTCTINPGENE 491
G I+Y+TC+ + ENE
Sbjct: 378 GTILYATCSTSVQENE 393
>gi|253702184|ref|YP_003023373.1| sun protein [Geobacter sp. M21]
gi|251777034|gb|ACT19615.1| sun protein [Geobacter sp. M21]
Length = 448
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 64/103 (62%), Gaps = 3/103 (2%)
Query: 219 EGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTA 278
+GI ++ +I +LPSF D G +Q+ S + L P KGER+LD CAAPGGKTT
Sbjct: 215 DGIRLNQSGQITRLPSFRD---GLFTVQDESSQLAPLFLAPGKGERVLDACAAPGGKTTQ 271
Query: 279 IASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
IA L++D GE+ A D ++ K+ I++ +G+ + T+ +DA
Sbjct: 272 IAQLMQDSGEIYACDVNNKKLRLIKETCDRLGINSVRTFTMDA 314
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 418 SKGFSPNSFDRVLLDAPCSALGLRPRLFAAE--ETIQSLRNHGKYQRRMFDQAVQLVRPG 475
S +F R+L+DAPCS LG+ R + ++ L + Q + + + + P
Sbjct: 318 SNAIKETTFHRILVDAPCSGLGVIRRNPEGKWSKSGDDLLQLARTQVSILENLCRYLEPK 377
Query: 476 GIIVYSTCTINPGENE 491
G I+Y+TC+ + ENE
Sbjct: 378 GTILYATCSTSIQENE 393
>gi|422295633|gb|EKU22932.1| hypothetical protein NGA_0448000, partial [Nannochloropsis gaditana
CCMP526]
Length = 207
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/75 (53%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Query: 420 GFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIV 479
GF P +FD VLLD PCSALGLRPR F+ Q L +QR+ + AV L+R GG +
Sbjct: 24 GFYPETFDHVLLDPPCSALGLRPR-FSLPVRGQDLDAFVAFQRKFWWAAVFLLRVGGSMT 82
Query: 480 YSTCTINPGENEALC 494
YSTCT+NP ENE +
Sbjct: 83 YSTCTLNPQENEDMV 97
>gi|261419371|ref|YP_003253053.1| sun protein [Geobacillus sp. Y412MC61]
gi|319766186|ref|YP_004131687.1| sun protein [Geobacillus sp. Y412MC52]
gi|261375828|gb|ACX78571.1| sun protein [Geobacillus sp. Y412MC61]
gi|317111052|gb|ADU93544.1| sun protein [Geobacillus sp. Y412MC52]
Length = 444
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 54/81 (66%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G + +Q+ S++ A ALDP GER+LD CAAPGGKTT IA + GEVVAVD +KVM
Sbjct: 228 GWLTIQDESSMLVARALDPAPGERVLDCCAAPGGKTTHIAERMDGRGEVVAVDIHEHKVM 287
Query: 301 DIQKLAAEMGLKCITTYKLDA 321
I++ A +GL + T LD+
Sbjct: 288 LIEQQAKRLGLDNVATLSLDS 308
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 47/80 (58%), Gaps = 8/80 (10%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRL--FAAEETIQSLRNHGKYQRRMFDQAVQLVRPG 475
F+P SFDRVL+DAPC+ G+ +P + ++ I +L + Q+ + A L++ G
Sbjct: 315 FAPESFDRVLVDAPCTGFGVIRRKPEIKYTKGKDAIAAL---VEIQQAILRAAAPLLKKG 371
Query: 476 GIIVYSTCTINPGENEALCA 495
G +VYSTCT+ ENE A
Sbjct: 372 GTLVYSTCTVEREENEEAIA 391
>gi|297530652|ref|YP_003671927.1| sun protein [Geobacillus sp. C56-T3]
gi|297253904|gb|ADI27350.1| sun protein [Geobacillus sp. C56-T3]
Length = 444
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 54/81 (66%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G + +Q+ S++ A ALDP GER+LD CAAPGGKTT IA + GEVVAVD +KVM
Sbjct: 228 GWLTIQDESSMLVARALDPAPGERVLDCCAAPGGKTTHIAERMDGRGEVVAVDIHEHKVM 287
Query: 301 DIQKLAAEMGLKCITTYKLDA 321
I++ A +GL + T LD+
Sbjct: 288 LIEQQAKRLGLDNVATLALDS 308
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 47/80 (58%), Gaps = 8/80 (10%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRL--FAAEETIQSLRNHGKYQRRMFDQAVQLVRPG 475
F+P SFDRVL+DAPC+ G+ +P + ++ I +L + Q+ + A L++ G
Sbjct: 315 FAPESFDRVLVDAPCTGFGVIRRKPEIKYTKGKDAIAAL---VEIQQAILRAAAPLLKKG 371
Query: 476 GIIVYSTCTINPGENEALCA 495
G +VYSTCT+ ENE A
Sbjct: 372 GTLVYSTCTVEREENEEAIA 391
>gi|118581643|ref|YP_902893.1| sun protein [Pelobacter propionicus DSM 2379]
gi|118504353|gb|ABL00836.1| sun protein [Pelobacter propionicus DSM 2379]
Length = 452
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 67/115 (58%), Gaps = 3/115 (2%)
Query: 219 EGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTA 278
GI V+ ++I LP F+ EG +Q+ S + LDP+ GERILD CAAPGGK T
Sbjct: 220 HGILVEGRHQITSLPGFH---EGLFAVQDEASQMAGLLLDPRPGERILDACAAPGGKATH 276
Query: 279 IASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESND 333
+A L+ D GE++A+D S K+ IQ+ A +G+ I T + D L + +S D
Sbjct: 277 LAQLMNDRGELLAMDVSGVKLPLIQESAHRLGISIIRTRRADLLNSAAFPVDSFD 331
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 53/79 (67%), Gaps = 2/79 (2%)
Query: 417 NSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETI--QSLRNHGKYQRRMFDQAVQLVRP 474
NS F +SFDRVLLDAPCS LG+ R A+ + + L + QRRMF AV++++P
Sbjct: 321 NSAAFPVDSFDRVLLDAPCSGLGVIRRNPEAKWRLRPEDLTRLAETQRRMFANAVRMLKP 380
Query: 475 GGIIVYSTCTINPGENEAL 493
GG +VYSTC+ + ENEA+
Sbjct: 381 GGRLVYSTCSTSREENEAV 399
>gi|194014930|ref|ZP_03053547.1| ribosomal RNA small subunit methyltransferase B [Bacillus pumilus
ATCC 7061]
gi|194013956|gb|EDW23521.1| ribosomal RNA small subunit methyltransferase B [Bacillus pumilus
ATCC 7061]
Length = 442
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 61/100 (61%), Gaps = 3/100 (3%)
Query: 225 MHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLR 284
M I PSF EG + +Q+ S++ A ALDPQ GE +LD CAAPGGK+T IA +
Sbjct: 213 MKGSIVSTPSFQ---EGYVTIQDESSMLVARALDPQPGEAVLDACAAPGGKSTHIAERMN 269
Query: 285 DEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324
D+G++V++D +KV I++ A + L I LDA KA
Sbjct: 270 DKGQIVSLDLHEHKVKLIKQAAKRLNLTQIEAKALDARKA 309
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 49/81 (60%), Gaps = 5/81 (6%)
Query: 415 AENSKG-FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQ 470
A +KG +S SFDR+L+DAPCS G+ +P + + S R Q+ + +
Sbjct: 306 ARKAKGDYSEASFDRILIDAPCSGFGVIRRKPDMKYTKSKEDSAR-LAAIQQAILKETAP 364
Query: 471 LVRPGGIIVYSTCTINPGENE 491
L++PGG +VYSTCT++P EN+
Sbjct: 365 LLKPGGTLVYSTCTMDPTENQ 385
>gi|81299771|ref|YP_399979.1| sun protein [Synechococcus elongatus PCC 7942]
gi|81168652|gb|ABB56992.1| sun protein [Synechococcus elongatus PCC 7942]
Length = 451
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 83/159 (52%), Gaps = 15/159 (9%)
Query: 223 VDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASL 282
+D I QLP F EG +Q+ + + AH +DPQ GE +LD+CAAPGGK+T +A L
Sbjct: 223 IDPPGPIRQLPGFD---EGWWMVQDSSAQLIAHLVDPQPGETVLDVCAAPGGKSTHLAEL 279
Query: 283 LRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA--LKAVRRKNESNDEP----- 335
+ D G+V+A D S ++ +Q+ A + L ITT +D +K ++ D P
Sbjct: 280 MGDRGQVIACDSSAKRLRKVQENAQRLQLSSITTRAIDGRQIKGIQADRILVDAPCSGLG 339
Query: 336 NMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSC 374
+ D + Q+ DS+ E+ + +E L+ +C
Sbjct: 340 TLHRHADGRW--RQSPDSV---AELAQLQSEILDAAAAC 373
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 4/102 (3%)
Query: 396 KNMRRMRNGPGRNQC--LGGRAENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAE--ETI 451
K +R+++ R Q + RA + + DR+L+DAPCS LG R ++
Sbjct: 294 KRLRKVQENAQRLQLSSITTRAIDGRQIKGIQADRILVDAPCSGLGTLHRHADGRWRQSP 353
Query: 452 QSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEAL 493
S+ + Q + D A ++P G +VY+TCT++P ENEA+
Sbjct: 354 DSVAELAQLQSEILDAAAACLKPAGTLVYATCTLHPAENEAV 395
>gi|56419708|ref|YP_147026.1| RNA-binding Sun protein [Geobacillus kaustophilus HTA426]
gi|375008141|ref|YP_004981774.1| hypothetical protein [Geobacillus thermoleovorans CCB_US3_UF5]
gi|56379550|dbj|BAD75458.1| RNA-binding Sun protein [Geobacillus kaustophilus HTA426]
gi|359286990|gb|AEV18674.1| hypothetical protein GTCCBUS3UF5_13610 [Geobacillus thermoleovorans
CCB_US3_UF5]
Length = 444
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 53/81 (65%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G + +Q+ S++ A ALDP GER+LD CAAPGGKTT IA + GEVVAVD KVM
Sbjct: 228 GWLTIQDESSMLVARALDPAPGERVLDCCAAPGGKTTHIAERMDGRGEVVAVDIHERKVM 287
Query: 301 DIQKLAAEMGLKCITTYKLDA 321
I++ A +GL + T LD+
Sbjct: 288 MIEQQAKRLGLDNVATLALDS 308
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 47/80 (58%), Gaps = 8/80 (10%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRL--FAAEETIQSLRNHGKYQRRMFDQAVQLVRPG 475
F+P SFDRVL+DAPC+ G+ +P + ++ I +L + Q+ + A L++ G
Sbjct: 315 FAPESFDRVLVDAPCTGFGVIRRKPEIKYTKGKDAIAAL---VEIQQAILRAAAPLLKKG 371
Query: 476 GIIVYSTCTINPGENEALCA 495
G +VYSTCT+ ENE A
Sbjct: 372 GTLVYSTCTVEREENEEAIA 391
>gi|322418095|ref|YP_004197318.1| sun protein [Geobacter sp. M18]
gi|320124482|gb|ADW12042.1| sun protein [Geobacter sp. M18]
Length = 479
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 64/103 (62%), Gaps = 3/103 (2%)
Query: 219 EGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTA 278
+GI ++ +I +LPSF D G +Q+ S + L P+KG+R+LD C+APGGKTT
Sbjct: 245 DGIRLNQSGQITRLPSFRD---GLFTVQDESSQLAPLFLSPEKGDRVLDACSAPGGKTTQ 301
Query: 279 IASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
IA L+ + GE+ A D +H K+ I++ +G+ + T+ +DA
Sbjct: 302 IAQLMGNSGEIYACDVNHKKLRLIKETCDRLGITSVRTFTMDA 344
>gi|296242733|ref|YP_003650220.1| Fmu (Sun) domain-containing protein [Thermosphaera aggregans DSM
11486]
gi|296095317|gb|ADG91268.1| Fmu (Sun) domain protein [Thermosphaera aggregans DSM 11486]
Length = 382
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 71/290 (24%), Positives = 127/290 (43%), Gaps = 64/290 (22%)
Query: 25 RAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVKG 84
R YG+ R+ ++L P IRVNTL+TT E V+
Sbjct: 11 RVYGS-LTQRLVESLATPPRRLYIRVNTLRTTV-------------EEVLEEMEKEGVRA 56
Query: 85 RLQNGTISESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGAQVYV 144
R ++ + E+ V+V+ GP + P K IV K A +V+ G+ +Y
Sbjct: 57 R-KDEEVDEA--------VYVELEGPFKL-----PGDIDKAFIVDEKTAASVMMGSNLYR 102
Query: 145 PGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIGQ 204
PGV+ S + +G++V V + G Y+G
Sbjct: 103 PGVLKADS-IRRGELVKV--------------------------------VSKHGFYVGV 129
Query: 205 GTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDV---LEGEIFLQNLPSIVTAHALDPQK 261
A MS + +FR ++G+ +++ P ++ +G I+ Q LP++VT L+P++
Sbjct: 130 VEAAMSSSELFRVNKGLIGVNITSVYRAPKINELSVYRKGLIYPQGLPAMVTTLFLNPRE 189
Query: 262 GERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL 311
G+ + D+ A+PGGKT + + + ++A DR+ K+ ++ ++GL
Sbjct: 190 GDLVADLNASPGGKTGHVVQYTKGKSRIIAFDRNTPKIEVLKTNLEKLGL 239
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 46/69 (66%), Gaps = 1/69 (1%)
Query: 427 DRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTIN 486
++VL+D PCS LG+RP+L ++T+ + N+ YQ++ A +++ GGI VYSTCT+
Sbjct: 264 NKVLIDPPCSNLGVRPKL-TFDKTLTDILNNANYQKQFLKTAYSILKKGGIAVYSTCTLT 322
Query: 487 PGENEALCA 495
ENE + +
Sbjct: 323 LRENEEVVS 331
>gi|448237330|ref|YP_007401388.1| ribosomal RNA small subunit methyltransferase B [Geobacillus sp.
GHH01]
gi|445206172|gb|AGE21637.1| ribosomal RNA small subunit methyltransferase B [Geobacillus sp.
GHH01]
Length = 444
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 54/81 (66%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G + +Q+ S++ A ALDP GER+LD CAAPGGKTT IA + GEVVAVD +KVM
Sbjct: 228 GWLTIQDESSMLVARALDPAPGERVLDCCAAPGGKTTHIAERMGGRGEVVAVDIHEHKVM 287
Query: 301 DIQKLAAEMGLKCITTYKLDA 321
I++ A +GL + T LD+
Sbjct: 288 LIEQQAKRLGLDNVATLALDS 308
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 47/80 (58%), Gaps = 8/80 (10%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRL--FAAEETIQSLRNHGKYQRRMFDQAVQLVRPG 475
F+P SFDRVL+DAPC+ G+ +P + ++ I +L + Q+ + A L++ G
Sbjct: 315 FAPESFDRVLVDAPCTGFGVIRRKPEIKYTKGKDAIAAL---VEIQQAILRAAAPLLKKG 371
Query: 476 GIIVYSTCTINPGENEALCA 495
G +VYSTCT+ ENE A
Sbjct: 372 GTLVYSTCTVEREENEEAIA 391
>gi|119872179|ref|YP_930186.1| PUA domain-containing protein [Pyrobaculum islandicum DSM 4184]
gi|119673587|gb|ABL87843.1| PUA domain containing protein [Pyrobaculum islandicum DSM 4184]
Length = 376
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 70/295 (23%), Positives = 126/295 (42%), Gaps = 69/295 (23%)
Query: 21 EYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVAS 80
++F+ + + ++T+P IRVNT K + D++++L NS +A
Sbjct: 14 KHFLEYLSDNEIDALFHSVTKPPSRYYIRVNTTKISRRDLMKRL-----NSRGVQAYPDE 68
Query: 81 SVKGRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGA 140
L ++ GP I K+VIV +K AE+V+ GA
Sbjct: 69 HFDDAL-----------------WLPVEGPFDIPTAR------KQVIVDKKAAESVMLGA 105
Query: 141 QVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGL 200
+Y PG++ + HV++GD V + +G+
Sbjct: 106 DLYAPGIVK-TDHVKEGDEVNI--------------------------------VSDNGV 132
Query: 201 YIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDV---LEGEIFLQNLPSIVTAHAL 257
+ GTA++ I + G+ + + +++ P D+ EG ++ Q+LP+I H
Sbjct: 133 VVAFGTAVVDSDEILKTRRGLYIKVEKSLYKAPKIRDLPEYKEGLLYSQSLPAIAVGHVA 192
Query: 258 DPQKGERILDMCAAPGGKTTAIASL-LRDEGEVVAVDRSHNKVMDIQKLAAEMGL 311
+ +D+ AAPGGK T +A + LR ++AVDRS K+ +++ +GL
Sbjct: 193 KRARASTAVDLNAAPGGKATHLAQIGLR----IIAVDRSWPKIEKLKEEVKRLGL 243
Score = 46.2 bits (108), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 55/109 (50%), Gaps = 4/109 (3%)
Query: 383 GVERTYVSKADTRKNMRRMRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGLRP 442
V+R++ ++ ++R+ + L + F + D L+D PC+ +G+RP
Sbjct: 223 AVDRSWPKIEKLKEEVKRLGLADRIDVVLHDSRYLDRDFPRLAADLALVDPPCTDIGVRP 282
Query: 443 RLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENE 491
+++ + TI+ + +YQ + A+++ ++YSTCT+ ENE
Sbjct: 283 KIY-HKVTIEMAKTLSRYQIQFLKTALKI---APTVIYSTCTLTYIENE 327
>gi|89895438|ref|YP_518925.1| hypothetical protein DSY2692 [Desulfitobacterium hafniense Y51]
gi|89334886|dbj|BAE84481.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 453
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 63/106 (59%), Gaps = 3/106 (2%)
Query: 216 RASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGK 275
R E + ++ + QLPSF EG +Q+ S + AH L+PQ G+++LD C APGGK
Sbjct: 211 RVPESLMIEEFGSLDQLPSFQ---EGLFTVQDESSQLIAHVLNPQAGQKVLDACGAPGGK 267
Query: 276 TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
TT +A + ++GE++A D +KV I+ LAA +G+ I DA
Sbjct: 268 TTHLAQRMENQGEILAFDIHPHKVKLIEDLAARLGITIIRAQAGDA 313
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 412 GGRAENSKGFSPNSFDRVLLDAPCSALG-LRPR----LFAAEETIQSLRNHGKYQRRMFD 466
G A G S +VL+DAPCS LG LR R E+ I++L Q + +
Sbjct: 310 AGDARELAGVKDASCHKVLVDAPCSGLGVLRRRADMRWHKEEDEIKTL---PALQLAILE 366
Query: 467 QAVQLVRPGGIIVYSTCTINPGEN 490
+A Q V GG +VYSTCTI P EN
Sbjct: 367 RAAQCVAAGGELVYSTCTIEPEEN 390
>gi|193214990|ref|YP_001996189.1| sun protein [Chloroherpeton thalassium ATCC 35110]
gi|193088467|gb|ACF13742.1| sun protein [Chloroherpeton thalassium ATCC 35110]
Length = 443
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 62/97 (63%), Gaps = 2/97 (2%)
Query: 227 NRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDE 286
+R F L F GE+ +Q+ + L+PQ G+++LDMCAAPGGK+T +A ++ +
Sbjct: 218 DRFFDLEPFLST--GEVSVQSEAQALACRLLNPQPGQKVLDMCAAPGGKSTYLAEMMANA 275
Query: 287 GEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323
G++ ++D NK+ DI +LA+ +G+ I+T K DA +
Sbjct: 276 GQITSLDLYDNKLEDIDRLASALGIDIISTIKHDATR 312
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 12/76 (15%)
Query: 426 FDRVLLDAPCSALG-------LRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGII 478
FD +LLDAPC+ G LR RL +E + +L N Q ++ + A ++ +P I
Sbjct: 319 FDAILLDAPCTGTGVLSRRAELRWRL--SEADLAALSN---LQYQLLENAAKMAKPDAAI 373
Query: 479 VYSTCTINPGENEALC 494
VYSTC+I P EN+ L
Sbjct: 374 VYSTCSIEPEENQVLI 389
>gi|389573303|ref|ZP_10163378.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus sp. M 2-6]
gi|388427000|gb|EIL84810.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus sp. M 2-6]
Length = 442
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 60/100 (60%), Gaps = 3/100 (3%)
Query: 225 MHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLR 284
M I P F EG + +Q+ S++ A ALDPQ GE +LD CAAPGGK+T IA +
Sbjct: 213 MKGSIVSTPFFQ---EGFVTIQDESSMLVARALDPQPGEMVLDACAAPGGKSTHIAERMN 269
Query: 285 DEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324
DEG++V++D +KV I++ A + L I LDA KA
Sbjct: 270 DEGKIVSLDLHEHKVKLIKQAAKRLNLTHIEAKALDARKA 309
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 4/77 (5%)
Query: 418 SKGFSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRP 474
S + SFDR+L+DAPCS G+ +P + + + S R Q+ + + QL++P
Sbjct: 310 SDHYDDASFDRILIDAPCSGFGVIRRKPDMKYTKSSEDSARL-ATIQQSILHETAQLLKP 368
Query: 475 GGIIVYSTCTINPGENE 491
GG +VYSTCT++P EN+
Sbjct: 369 GGTLVYSTCTMDPTENQ 385
>gi|384433825|ref|YP_005643183.1| Fmu (Sun) domain-containing protein [Sulfolobus solfataricus 98/2]
gi|261601979|gb|ACX91582.1| Fmu (Sun) domain protein [Sulfolobus solfataricus 98/2]
Length = 350
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 74/301 (24%), Positives = 126/301 (41%), Gaps = 76/301 (25%)
Query: 24 IRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVK 83
+R ++ + A+ +P+ IRVNTLKT+ + ++++L + EA
Sbjct: 12 LREVYGEYLNDFLNAIRKPNPRLYIRVNTLKTSVEKILERLPHFKPDEDFKEA------- 64
Query: 84 GRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGAQVY 143
++V+ GP+ I+ +VIV +K AE+ + GA VY
Sbjct: 65 -------------------IYVEIKGPNEINIH------ENKVIVDKKTAESAMLGANVY 99
Query: 144 VPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIG 203
PG+ + VV + ++ T+ G+ + G Y G
Sbjct: 100 KPGLKS---------VVINNAKDKRVTVYSDNGIPVAEGK-----------------YYG 133
Query: 204 QGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVLE---GEIFLQNLPSIVTAHALDPQ 260
T + V++ N ++ P D+ E G I++Q S+ AH LDP
Sbjct: 134 MNT-------------NLVVEVTNSLYTSPKLADLPELKNGLIYVQGKASMYVAHLLDPH 180
Query: 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
E+I+DM A GGK T I L +++ D + KV ++ LA +MG++ I YK D
Sbjct: 181 PNEKIVDMTAYAGGKLTHIYQ-LEPRVKLIGFDHTEKKVEKLRDLANKMGMR-IEIYKAD 238
Query: 321 A 321
+
Sbjct: 239 S 239
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 62/109 (56%), Gaps = 12/109 (11%)
Query: 394 TRKNMRRMRNGPGRNQCLGGRAENSKG--------FSPNSFDRVLLDAPCSALGLRPRLF 445
T K + ++R+ + +G R E K + D+V++D PCSALG+RP+L+
Sbjct: 214 TEKKVEKLRDLANK---MGMRIEIYKADSRYLYEDYKIGDVDKVVIDPPCSALGIRPKLY 270
Query: 446 AAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEALC 494
+T Q + N KYQ++ + A ++++ G+++YSTCT+ ENE +
Sbjct: 271 D-HKTKQDILNFHKYQKQFLNSAYKILKKNGVVIYSTCTVTTWENEKVI 318
>gi|56750589|ref|YP_171290.1| sun protein [Synechococcus elongatus PCC 6301]
gi|56685548|dbj|BAD78770.1| sun protein [Synechococcus elongatus PCC 6301]
Length = 405
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 60/98 (61%), Gaps = 3/98 (3%)
Query: 223 VDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASL 282
+D I QLP F EG +Q+ + + AH +DPQ GE +LD+CAAPGGK+T +A L
Sbjct: 177 IDPPGPIRQLPGFD---EGWWMVQDSSAQLIAHLVDPQPGETVLDVCAAPGGKSTHLAEL 233
Query: 283 LRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
+ D G+V+A D S ++ +Q+ A + L ITT +D
Sbjct: 234 MGDRGQVIACDSSAKRLRKVQENAQRLQLSSITTRAID 271
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 55/102 (53%), Gaps = 4/102 (3%)
Query: 396 KNMRRMRNGPGRNQC--LGGRAENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAE--ETI 451
K +R+++ R Q + RA + + DR+L+DAPCS LG+ R ++
Sbjct: 248 KRLRKVQENAQRLQLSSITTRAIDGRQIKGIQADRILVDAPCSGLGILHRHADGRWRQSP 307
Query: 452 QSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEAL 493
S+ + Q + D A ++P G +VY+TCT++P ENEA+
Sbjct: 308 DSVAELAQLQSEILDAAAACLKPAGTLVYATCTLHPAENEAV 349
>gi|399924362|ref|ZP_10781720.1| 16S rRNA methyltransferase B [Peptoniphilus rhinitidis 1-13]
Length = 432
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 57/81 (70%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
GE ++Q+L SI+ + L+P K ++LD+CAAPGGK+T +A ++ + GE+VA D+S K+
Sbjct: 228 GEFYVQDLGSILVSTFLNPSKDSKVLDLCAAPGGKSTHLAEIMENTGEIVACDKSKKKIK 287
Query: 301 DIQKLAAEMGLKCITTYKLDA 321
I++ A +G+K I T+ DA
Sbjct: 288 LIEENARRLGVKNIKTFVNDA 308
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 424 NSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
+ FD VL+DAPCS GL +P + + I+ L+N + Q ++ + A ++ GG +VY
Sbjct: 317 DKFDYVLVDAPCSGTGLYRKKPDI-KWNKDIKDLKNLSEIQLKILENAKNYLKLGGHLVY 375
Query: 481 STCTINPGENE 491
STC+++ ENE
Sbjct: 376 STCSLSKIENE 386
>gi|219669868|ref|YP_002460303.1| sun protein [Desulfitobacterium hafniense DCB-2]
gi|423074032|ref|ZP_17062766.1| ribosomal RNA small subunit methyltransferase B [Desulfitobacterium
hafniense DP7]
gi|219540128|gb|ACL21867.1| sun protein [Desulfitobacterium hafniense DCB-2]
gi|361855126|gb|EHL07128.1| ribosomal RNA small subunit methyltransferase B [Desulfitobacterium
hafniense DP7]
Length = 453
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 63/106 (59%), Gaps = 3/106 (2%)
Query: 216 RASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGK 275
R E + ++ + +LPSF EG +Q+ S + AH L+PQ G+++LD C APGGK
Sbjct: 211 RVPESLVIEDFGSLDKLPSFQ---EGHFTVQDESSQLIAHVLNPQAGQKVLDACGAPGGK 267
Query: 276 TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
TT +A + ++GE++A D +KV I+ LAA +G+ I DA
Sbjct: 268 TTHLAQRMENQGEILAFDIHPHKVKLIEDLAARLGITIIRAQAGDA 313
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 412 GGRAENSKGFSPNSFDRVLLDAPCSALG-LRPR----LFAAEETIQSLRNHGKYQRRMFD 466
G A G S +VL+DAPCS LG LR R E+ I++L Q + +
Sbjct: 310 AGDARELAGVKDASCHKVLVDAPCSGLGVLRRRADMRWHKEEDEIKTL---PALQLAILE 366
Query: 467 QAVQLVRPGGIIVYSTCTINPGEN 490
+A Q V GG +VYSTCTI P EN
Sbjct: 367 RAAQCVAAGGELVYSTCTIEPEEN 390
>gi|354582479|ref|ZP_09001381.1| sun protein [Paenibacillus lactis 154]
gi|353199878|gb|EHB65340.1| sun protein [Paenibacillus lactis 154]
Length = 454
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 49/77 (63%), Gaps = 4/77 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F P SFDR+LLDAPCS LG+ +P L + T + +R Q R+ D L+RPGG+
Sbjct: 327 FEPASFDRILLDAPCSGLGVIRRKPDLKWGK-TEEDIREIAALQSRLLDSVSALLRPGGV 385
Query: 478 IVYSTCTINPGENEALC 494
+VYSTCTI P ENE +
Sbjct: 386 LVYSTCTIEPQENEGVV 402
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 53/84 (63%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
EG I +Q+ S++ A A+ P+ G R+LD CAAPGGK+ + L++DEG +VA D +K
Sbjct: 239 EGMISIQDESSMLVAEAVGPEPGMRVLDCCAAPGGKSAHMGELMKDEGSIVANDIHSHKG 298
Query: 300 MDIQKLAAEMGLKCITTYKLDALK 323
I AA +GL CI T DA++
Sbjct: 299 KLIADQAARLGLDCIRTVTGDAIE 322
>gi|452974522|gb|EME74342.1| 16S rRNA methyltransferase B [Bacillus sonorensis L12]
Length = 450
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 57/85 (67%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
EG++ +Q+ S++ A AL P+ GE +LD CAAPGGK+T I LL + G+VV++D +KV
Sbjct: 230 EGDVTIQDESSMLVARALGPKPGETVLDACAAPGGKSTHIGELLENTGKVVSLDLHRHKV 289
Query: 300 MDIQKLAAEMGLKCITTYKLDALKA 324
IQ+ A +GL I T +DA KA
Sbjct: 290 KLIQEAAGRLGLTNIDTRAMDARKA 314
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Query: 418 SKGFSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRP 474
++ F P FDR+L+DAPCS G+ +P L ++ S R G Q + + L++
Sbjct: 315 AEAFQPEQFDRILVDAPCSGFGVIRRKPDLKYSKTPEDSARLAG-IQLAILKEIAPLLKK 373
Query: 475 GGIIVYSTCTINPGENE 491
GG +VYSTCT++ ENE
Sbjct: 374 GGTLVYSTCTMDRTENE 390
>gi|374324700|ref|YP_005077829.1| ribosomal RNA small subunit methyltransferase B (rRNA
(cytosine-C(5)-)-methyltransferase) [Paenibacillus
terrae HPL-003]
gi|357203709|gb|AET61606.1| ribosomal RNA small subunit methyltransferase B (rRNA
(cytosine-C(5)-)-methyltransferase) [Paenibacillus
terrae HPL-003]
Length = 471
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 51/74 (68%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
++P SFDRVLLDAPCS G+ +P L ++ T Q +R+ + Q + D +L++PGGI
Sbjct: 342 YAPASFDRVLLDAPCSGFGVIRRKPDLRWSK-TPQDVRDITQLQHELLDSVAELLKPGGI 400
Query: 478 IVYSTCTINPGENE 491
+VYSTCTI P ENE
Sbjct: 401 LVYSTCTIEPDENE 414
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 57/96 (59%), Gaps = 2/96 (2%)
Query: 232 LPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVA 291
L ++Y +G + +Q+ S++ A A+ P+ +LD CAAPGGKT +A L++D+G ++A
Sbjct: 248 LTTWYT--DGLLSVQDESSMLVAEAVAPEPDMLVLDCCAAPGGKTAHMAELMKDQGRIIA 305
Query: 292 VDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRR 327
D +K IQ+ A +GL + T DAL+ R
Sbjct: 306 NDLHAHKHRLIQEQADRLGLDAVETVTGDALELKNR 341
>gi|218884374|ref|YP_002428756.1| RNA (Cytosine-C(5)-)-methyltransferase [Desulfurococcus
kamchatkensis 1221n]
gi|218765990|gb|ACL11389.1| RNA (Cytosine-C(5)-)-methyltransferase [Desulfurococcus
kamchatkensis 1221n]
Length = 386
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 74/302 (24%), Positives = 129/302 (42%), Gaps = 66/302 (21%)
Query: 13 LRWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSG 72
+ W +V ++ YG+ + K L P +RVNT+KTT +L+ +++ G
Sbjct: 1 MSW--RVRSLLVKPYGSIVDVLVEK-LKTPPMRMYLRVNTVKTTP----HRLVELLRERG 53
Query: 73 SSEADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKC 132
EA + + E V+ GP ++ + K ++V K
Sbjct: 54 V-EAYMDEYI-----------------EEAVYTVVQGPFPLECNTD-----KYIVVDDKT 90
Query: 133 AEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDP 192
A +++ GA +Y PGV+ S E ++AV+
Sbjct: 91 ASSLILGANLYRPGVVKSSVFSEGDKLLAVT----------------------------- 121
Query: 193 YYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLP--SFYDVL-EGEIFLQNLP 249
R G + A+ S + + +G+ + F+ P S D+ +G ++ Q P
Sbjct: 122 ----RQGTPLACLEAVTSSKSLHKMRQGLVARSTSSPFKAPRISELDIYKQGLLYPQGYP 177
Query: 250 SIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEM 309
SIVT LDP+ GE I+DM A+PGGKT+ I L + ++A+DRS K+ +++ + +
Sbjct: 178 SIVTTRVLDPRPGELIVDMNASPGGKTSHIVQLTKGGARIIAIDRSPGKIAELKNNLSNL 237
Query: 310 GL 311
L
Sbjct: 238 DL 239
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 427 DRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTIN 486
D+VL+D PCS LG+RPRL + + + N YQR+ A +V+PGG IVYSTCT+
Sbjct: 264 DKVLIDPPCSNLGVRPRLLE-NRSYKDVENLSSYQRQFLKTAALIVKPGGYIVYSTCTLT 322
Query: 487 PGENE 491
ENE
Sbjct: 323 LEENE 327
>gi|404494920|ref|YP_006719026.1| 16S rRNA (5-methyl-C967)-methyltransferase [Geobacter
metallireducens GS-15]
gi|418067574|ref|ZP_12704913.1| sun protein [Geobacter metallireducens RCH3]
gi|78192548|gb|ABB30315.1| 16S rRNA (5-methyl-C967)-methyltransferase [Geobacter
metallireducens GS-15]
gi|373558572|gb|EHP84908.1| sun protein [Geobacter metallireducens RCH3]
Length = 446
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 61/107 (57%), Gaps = 3/107 (2%)
Query: 217 ASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKT 276
A G+ + + LP F EG +Q+ S + A LDPQ GERILD+CAAPGGK
Sbjct: 213 APHGVRILSRTAVTTLPGFA---EGLFTVQDESSQLAAFFLDPQPGERILDVCAAPGGKA 269
Query: 277 TAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323
T +A L+ + GEV+A D S K+ + + AA +G+ I T DA K
Sbjct: 270 TYLAQLMENRGEVLACDISAKKLRLVAEAAARLGIGIIRTMAGDATK 316
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 402 RNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAE--ETIQSLRNHGK 459
R G G + + G A P FDR+LLDAPCS G+ R + +T L
Sbjct: 301 RLGIGIIRTMAGDATKPGAGEP-PFDRILLDAPCSGFGVIRRNPEGKWWKTPDDLARLAA 359
Query: 460 YQRRMFDQAVQLVRPGGIIVYSTCTINPGENE 491
QR + +RPGG+++YSTC+ E+E
Sbjct: 360 TQRNILAAVAPRLRPGGVLLYSTCSTMVAEDE 391
>gi|15897306|ref|NP_341911.1| Sun protein [Sulfolobus solfataricus P2]
gi|284174558|ref|ZP_06388527.1| Sun (fmu) protein (sun-1) [Sulfolobus solfataricus 98/2]
gi|13813517|gb|AAK40701.1| Sun (fmu) protein (sun-1) [Sulfolobus solfataricus P2]
Length = 327
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 121/287 (42%), Gaps = 76/287 (26%)
Query: 38 ALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTISESQIP 97
A+ +P+ IRVNTLKT+ + ++++L + EA
Sbjct: 3 AIRKPNPRLYIRVNTLKTSVEKILERLPHFKPDEDFKEA--------------------- 41
Query: 98 GLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKG 157
++V+ GP+ I+ +VIV +K AE+ + GA VY PG+ +
Sbjct: 42 -----IYVEIKGPNEINIH------ENKVIVDKKTAESAMLGANVYKPGLKS-------- 82
Query: 158 DVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRA 217
VV + ++ T+ G+ + G Y G T
Sbjct: 83 -VVINNAKDKRVTVYSDNGIPVAEGK-----------------YYGMNT----------- 113
Query: 218 SEGIAVDMHNRIFQLPSFYDVLE---GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGG 274
+ V++ N ++ P D+ E G I++Q S+ AH LDP E+I+DM A GG
Sbjct: 114 --NLVVEVTNSLYTSPKLADLPELKNGLIYVQGKASMYVAHLLDPHPNEKIVDMTAYAGG 171
Query: 275 KTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
K T I L +++ D + KV ++ LA +MG++ I YK D+
Sbjct: 172 KLTHIYQ-LEPRVKLIGFDHTEKKVEKLRDLANKMGMR-IEIYKADS 216
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 62/109 (56%), Gaps = 12/109 (11%)
Query: 394 TRKNMRRMRNGPGRNQCLGGRAENSKG--------FSPNSFDRVLLDAPCSALGLRPRLF 445
T K + ++R+ + +G R E K + D+V++D PCSALG+RP+L+
Sbjct: 191 TEKKVEKLRDLANK---MGMRIEIYKADSRYLYEDYKIGDVDKVVIDPPCSALGIRPKLY 247
Query: 446 AAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEALC 494
+T Q + N KYQ++ + A ++++ G+++YSTCT+ ENE +
Sbjct: 248 D-HKTKQDILNFHKYQKQFLNSAYKILKKNGVVIYSTCTVTTWENEKVI 295
>gi|403383389|ref|ZP_10925446.1| ribosomal RNA small subunit methyltransferase B [Kurthia sp. JC30]
Length = 452
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 56/85 (65%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G I +Q+ S++ A+ALD Q G R+ DMCAAPGGKTT IA + +EGE++A D +K+
Sbjct: 237 DGIITIQDESSMLPAYALDVQPGMRVYDMCAAPGGKTTHIAEKMNNEGELIATDLHKHKI 296
Query: 300 MDIQKLAAEMGLKCITTYKLDALKA 324
IQ+ A +GL I T LD KA
Sbjct: 297 KLIQENADRLGLSIIKTSVLDGRKA 321
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 65/123 (52%), Gaps = 12/123 (9%)
Query: 376 EKVSNEKGVERTYVSKADTR---KNMRRMRNGPGRNQCLGGRAENSKGFSPNSFDRVLLD 432
EK++NE + T + K + +N R+ + L GR + F SFDR+L+D
Sbjct: 278 EKMNNEGELIATDLHKHKIKLIQENADRLGLSIIKTSVLDGRKATDE-FEAASFDRILVD 336
Query: 433 APCSALGL---RP--RLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINP 487
APCS LG+ +P + EE SL K Q + D A +L++P G +VYSTCTI+
Sbjct: 337 APCSGLGVIRRKPDIKYTKTEEDFASLH---KIQVDLLDAAYELLKPQGKMVYSTCTIDK 393
Query: 488 GEN 490
EN
Sbjct: 394 MEN 396
>gi|138894694|ref|YP_001125147.1| 16S rRNA m(5)C 967 methyltransferase [Geobacillus
thermodenitrificans NG80-2]
gi|196247686|ref|ZP_03146388.1| sun protein [Geobacillus sp. G11MC16]
gi|134266207|gb|ABO66402.1| 16S rRNA m(5)C 967 methyltransferase [Geobacillus
thermodenitrificans NG80-2]
gi|196212470|gb|EDY07227.1| sun protein [Geobacillus sp. G11MC16]
Length = 444
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 53/81 (65%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G + +Q+ S++ A ALDP GER+LD CAAPGGKTT IA + GEVVAVD +KV
Sbjct: 228 GWLTIQDESSMLVARALDPAAGERVLDCCAAPGGKTTHIAERMDGRGEVVAVDIHEHKVK 287
Query: 301 DIQKLAAEMGLKCITTYKLDA 321
I++ A +GL I T LD+
Sbjct: 288 LIEQQAQRLGLDNIRTLALDS 308
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 8/80 (10%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRL--FAAEETIQSLRNHGKYQRRMFDQAVQLVRPG 475
F+P SFDR+L+DAPC+ G+ +P + + + +L + Q+ + A L++ G
Sbjct: 315 FAPESFDRILVDAPCTGFGVIRRKPEIKYTKGNDDVAAL---VEIQQAILRAAAPLLKKG 371
Query: 476 GIIVYSTCTINPGENEALCA 495
G +VYSTCTI ENE A
Sbjct: 372 GTLVYSTCTIEREENEEAIA 391
>gi|308069674|ref|YP_003871279.1| ribosomal RNA small subunit methyltransferase B (rRNA
(cytosine-C(5)-)-methyltransferase) [Paenibacillus
polymyxa E681]
gi|305858953|gb|ADM70741.1| Ribosomal RNA small subunit methyltransferase B (rRNA
(cytosine-C(5)-)-methyltransferase) [Paenibacillus
polymyxa E681]
Length = 471
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 53/83 (63%), Gaps = 4/83 (4%)
Query: 412 GGRAENSKGFSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQA 468
G E + ++P SFDR+LLDAPCS G+ +P L ++ T Q +R+ + Q + D
Sbjct: 333 GDALELKERYAPASFDRILLDAPCSGFGVIRRKPDLRWSK-TAQDVRDITQLQHELLDSV 391
Query: 469 VQLVRPGGIIVYSTCTINPGENE 491
L++PGGI+VYSTCTI P ENE
Sbjct: 392 AGLLKPGGILVYSTCTIEPDENE 414
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 57/96 (59%), Gaps = 2/96 (2%)
Query: 232 LPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVA 291
L S+Y +G + +Q+ S++ A A+ P+ G +LD CAAPGGKT +A L++D G +VA
Sbjct: 248 LTSWYT--DGLLSVQDESSMLVAEAVAPEPGMLVLDCCAAPGGKTAHMAELMKDHGRIVA 305
Query: 292 VDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRR 327
D +K I++ A +GL + T DAL+ R
Sbjct: 306 NDLHAHKHQLIREQANRLGLDAVETVTGDALELKER 341
>gi|390938885|ref|YP_006402623.1| Fmu (Sun) domain-containing protein [Desulfurococcus fermentans DSM
16532]
gi|390191992|gb|AFL67048.1| Fmu (Sun) domain protein [Desulfurococcus fermentans DSM 16532]
Length = 382
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 74/292 (25%), Positives = 124/292 (42%), Gaps = 64/292 (21%)
Query: 23 FIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSV 82
++ YG+ + K L P +RVNT+KTT +L+ +++ G EA +
Sbjct: 5 LVKPYGSIVDILVEK-LKTPPMRMYLRVNTVKTTP----HRLVELLRERGI-EAYI---- 54
Query: 83 KGRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGAQV 142
+ I Y V V+G P D K ++V K A +++ GA +
Sbjct: 55 ----------DEYIEEAAYTV-VQGPFPLECDTD-------KYIVVDDKTASSLILGANL 96
Query: 143 YVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYI 202
Y PGV+ S E ++AV+ R G +
Sbjct: 97 YRPGVVKSSIFSEGDKLLAVT---------------------------------RQGTPL 123
Query: 203 GQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDV---LEGEIFLQNLPSIVTAHALDP 259
A+ S + + G+ + F+ P ++ +G ++ Q PSIVT LDP
Sbjct: 124 ACLEAVTSSRSLHKMRRGLVARNTSSPFKAPRISELDIYKQGLLYPQGYPSIVTTRVLDP 183
Query: 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL 311
+ GE I+DM A+PGGKT+ I L + ++A+DRS K+ +++ + +GL
Sbjct: 184 RPGELIVDMNASPGGKTSHIVQLTKGGARIIAIDRSPGKITELKNTLSHLGL 235
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 427 DRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTIN 486
D+VL+D PCS LG+RPRL + + + N YQR+ A +V+PGG IVYSTCT+
Sbjct: 260 DKVLIDPPCSNLGVRPRLLE-NRSYKDVENLSSYQRQFLKTAALIVKPGGYIVYSTCTLT 318
Query: 487 PGENE 491
ENE
Sbjct: 319 LEENE 323
>gi|347522574|ref|YP_004780144.1| NOL1/NOP2/sun family RNA methylase [Pyrolobus fumarii 1A]
gi|343459456|gb|AEM37892.1| RNA methylase, NOL1/NOP2/sun family [Pyrolobus fumarii 1A]
Length = 460
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 55/85 (64%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
EG+I +Q + + LDP+ GE ++DMCAAPGGKTT +A L++++G + A D ++
Sbjct: 245 EGKIIIQEEAAAAASIMLDPKPGETVVDMCAAPGGKTTHLAELMKNQGRIYAFDIDDARI 304
Query: 300 MDIQKLAAEMGLKCITTYKLDALKA 324
++ L MG+K +T YK DA KA
Sbjct: 305 KRMKMLLKRMGIKIVTIYKEDAGKA 329
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 44/70 (62%), Gaps = 8/70 (11%)
Query: 427 DRVLLDAPCSALGLRPRLFAAEETIQSLRNHG-----KYQRRMFDQAVQLVRPGGIIVYS 481
D+VLLDAPC++ G + E +R G + QRR+ + AV+L++PGG ++Y+
Sbjct: 339 DKVLLDAPCTSTGT---IMKNPELRWRVREDGLEEIVREQRRLLEAAVRLLKPGGRLLYT 395
Query: 482 TCTINPGENE 491
TC++ P ENE
Sbjct: 396 TCSLLPEENE 405
>gi|189426656|ref|YP_001953833.1| sun protein [Geobacter lovleyi SZ]
gi|189422915|gb|ACD97313.1| sun protein [Geobacter lovleyi SZ]
Length = 464
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 59/106 (55%), Gaps = 3/106 (2%)
Query: 217 ASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKT 276
A EGI + +I LP F EG +Q+ S + AH L PQ GE+ILDMCAAPGGK
Sbjct: 225 APEGIQLLQRCQITGLPGFD---EGLFMVQDEASQLVAHLLAPQTGEQILDMCAAPGGKA 281
Query: 277 TAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322
T +A L+ D G + A D + ++ I + A +GL I DAL
Sbjct: 282 THLAQLMNDRGCITATDLNARRIRRICESAQRLGLTSIQAVAADAL 327
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 52/113 (46%), Gaps = 20/113 (17%)
Query: 394 TRKNMRRMRN--------GPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGL----- 440
T N RR+R G Q + A S FDR+LLDAPCS LG+
Sbjct: 297 TDLNARRIRRICESAQRLGLTSIQAVAADALTSDYLEGLQFDRILLDAPCSGLGVIRRNP 356
Query: 441 --RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENE 491
+ RL AE + + R H + D A ++P G++VY+TC+ E+E
Sbjct: 357 EAKWRLTPAEISRCAARQH-----LLIDAAAARLKPAGVLVYATCSTAMEEDE 404
>gi|407977638|ref|ZP_11158475.1| 16S rRNA methyltransferase B [Bacillus sp. HYC-10]
gi|407415891|gb|EKF37472.1| 16S rRNA methyltransferase B [Bacillus sp. HYC-10]
Length = 447
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 59/100 (59%), Gaps = 3/100 (3%)
Query: 225 MHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLR 284
M I P F EG + +Q+ S++ A ALDPQ GE + D CAAPGGK+T IA +
Sbjct: 218 MKGSIVATPFFQ---EGFVTIQDESSMLVARALDPQPGEMVFDACAAPGGKSTHIAERMN 274
Query: 285 DEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324
DEG++V++D +KV I++ A + L I LDA KA
Sbjct: 275 DEGKIVSLDLHEHKVKLIKQAAKRLNLTKIEAKALDARKA 314
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 4/77 (5%)
Query: 418 SKGFSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRP 474
S +S SFDR+L+DAPCS G+ +P + + + R Q+ + + L++P
Sbjct: 315 SDAYSEASFDRILIDAPCSGFGVIRRKPDMKYTKSPEDAAR-LAAIQQAILHETAPLLKP 373
Query: 475 GGIIVYSTCTINPGENE 491
GG +VYSTCT++P EN+
Sbjct: 374 GGTLVYSTCTMDPIENQ 390
>gi|70607231|ref|YP_256101.1| SUN family protein [Sulfolobus acidocaldarius DSM 639]
gi|449067473|ref|YP_007434555.1| SUN family protein [Sulfolobus acidocaldarius N8]
gi|449069745|ref|YP_007436826.1| SUN family protein [Sulfolobus acidocaldarius Ron12/I]
gi|68567879|gb|AAY80808.1| conserved Archaeal SUN family protein [Sulfolobus acidocaldarius
DSM 639]
gi|449035981|gb|AGE71407.1| SUN family protein [Sulfolobus acidocaldarius N8]
gi|449038253|gb|AGE73678.1| SUN family protein [Sulfolobus acidocaldarius Ron12/I]
Length = 349
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 75/298 (25%), Positives = 126/298 (42%), Gaps = 74/298 (24%)
Query: 24 IRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVK 83
+R F+ + +L P+ IRVNTLKT+ + ++L + ++ SEA
Sbjct: 15 LRKVSGTKFNSLLDSLLVPNSRLYIRVNTLKTSPTRIRERLPFLHEDEDFSEA------- 67
Query: 84 GRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGAQVY 143
++++ GP ++ + +VIV ++ AE+V+ GA VY
Sbjct: 68 -------------------LYIEIRGPSKLE------ERESKVIVDKRTAESVMMGANVY 102
Query: 144 VPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIG 203
PGV G+ V+V E G+ I G + +
Sbjct: 103 RPGVKRVI-----GNSRFVNVVSEN-------GIIIAEGEL-----------------VN 133
Query: 204 QGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGE 263
QG + I M++ + L ++ GEI LQ S+ A+ +DP+ GE
Sbjct: 134 QGNLAVK----------ITKSMYSS-YPLSDLDELKTGEILLQGKASMYVAYLIDPKPGE 182
Query: 264 RILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
+I+DM A PGGK T I L + ++ D + KV D+++L +G+ I TY D+
Sbjct: 183 KIIDMTAHPGGKLTHIYQ-LEPKARILGFDHTKRKVQDLRQLTQRLGMH-IETYLADS 238
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 421 FSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
F + D+VL+D PCSALGLRP+++ + + L N YQ++ + A +L++ GI++Y
Sbjct: 245 FRISDVDKVLIDPPCSALGLRPKIYDKKNK-EDLINLSSYQKQFINAAYKLLKKDGILIY 303
Query: 481 STCTINPGENEALC 494
STCT+ ENE +
Sbjct: 304 STCTMTEIENERIV 317
>gi|124027597|ref|YP_001012917.1| ribosomal RNA small subunit methyltransferase B [Hyperthermus
butylicus DSM 5456]
gi|123978291|gb|ABM80572.1| ribosomal RNA small subunit methyltransferase B [Hyperthermus
butylicus DSM 5456]
Length = 405
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 94/199 (47%), Gaps = 34/199 (17%)
Query: 126 VIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVL 185
++V ++ AE+++ GA VY PGV+A V+V E G+ + +
Sbjct: 108 LVVDKRAAESIMLGANVYAPGVVALDEACANPGA-EVTVVSEN-------GVPVANAVLA 159
Query: 186 QGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVL---EGE 242
+ R + G+G +AV++ R +++PS D + G
Sbjct: 160 EDY--------RRAMEEGRGL--------------VAVNVRPR-YRVPSLRDTVWWRRGV 196
Query: 243 IFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDI 302
I+ Q+LPS+ + LDP+ G I+DMCAAPGGKT+ I L+R E ++AVD S K +
Sbjct: 197 IYEQSLPSMYASRILDPEPGAVIVDMCAAPGGKTSHIYELVRGEARIIAVDHSARKTERM 256
Query: 303 QKLAAEMGLKCITTYKLDA 321
+ +G I + D+
Sbjct: 257 RMELGRLGHTRIEVIRADS 275
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 47/65 (72%), Gaps = 1/65 (1%)
Query: 427 DRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTIN 486
D VLLD PC++LG+ P+++ +T++ + N +YQR+ A +L++PGG++VYSTCT+
Sbjct: 288 DYVLLDPPCTSLGVIPKIYD-RKTLRDVANTAEYQRQFLRAAAKLLKPGGVLVYSTCTMT 346
Query: 487 PGENE 491
ENE
Sbjct: 347 LMENE 351
>gi|317129258|ref|YP_004095540.1| sun protein [Bacillus cellulosilyticus DSM 2522]
gi|315474206|gb|ADU30809.1| sun protein [Bacillus cellulosilyticus DSM 2522]
Length = 449
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 58/83 (69%)
Query: 239 LEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNK 298
++G I +Q+ S++ AHAL P++ ER+LD CAAPGGK+T IA +++ G++V++D +K
Sbjct: 230 VDGWITVQDEGSMLVAHALSPKENERVLDACAAPGGKSTHIAEKMKNSGQIVSLDIHKHK 289
Query: 299 VMDIQKLAAEMGLKCITTYKLDA 321
V I+K A + L I T +LDA
Sbjct: 290 VGLIEKNAKRLNLSIINTEQLDA 312
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 11/101 (10%)
Query: 396 KNMRRMRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLR 455
KN +R+ + L R + S F +SFDR+L+DAPCS LG+ R + ++ +
Sbjct: 295 KNAKRLNLSIINTEQLDAR-QVSGQFEEHSFDRILVDAPCSGLGVIQR----KPDLKWSK 349
Query: 456 NHG------KYQRRMFDQAVQLVRPGGIIVYSTCTINPGEN 490
N G + Q + + L++ GG +VYSTCT++ EN
Sbjct: 350 NEGDINRLAQIQTEILEAVWPLLKKGGTLVYSTCTVDKEEN 390
>gi|308173537|ref|YP_003920242.1| RNA-binding protein [Bacillus amyloliquefaciens DSM 7]
gi|384159442|ref|YP_005541515.1| 16S rRNA methyltransferase B [Bacillus amyloliquefaciens TA208]
gi|384164123|ref|YP_005545502.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Bacillus
amyloliquefaciens LL3]
gi|384168489|ref|YP_005549867.1| 16S rRNA methyltransferase B [Bacillus amyloliquefaciens XH7]
gi|307606401|emb|CBI42772.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Bacillus
amyloliquefaciens DSM 7]
gi|328553530|gb|AEB24022.1| 16S rRNA methyltransferase B [Bacillus amyloliquefaciens TA208]
gi|328911678|gb|AEB63274.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Bacillus
amyloliquefaciens LL3]
gi|341827768|gb|AEK89019.1| 16S rRNA methyltransferase B [Bacillus amyloliquefaciens XH7]
Length = 447
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 56/84 (66%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G++ +Q+ S++ A ALDP+ GE +LD CAAPGGK+ IA L+++EG + ++D +KV
Sbjct: 231 GQVSIQDESSMLVARALDPKPGETVLDACAAPGGKSAHIAELMKNEGSLTSLDLHRHKVK 290
Query: 301 DIQKLAAEMGLKCITTYKLDALKA 324
IQ+ A +GL I +DA KA
Sbjct: 291 LIQEGAERLGLTIIDAQTMDARKA 314
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 420 GFSPNSFDRVLLDAPCSALGL--RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F FDR+L+DAPCS G+ R +T + R + Q + + LV+ GG
Sbjct: 317 AFGAERFDRILVDAPCSGFGVIRRKPDMKYTKTPEDSRRLSEIQLGILREIAPLVKKGGT 376
Query: 478 IVYSTCTINPGENE 491
+VYSTCT++ ENE
Sbjct: 377 LVYSTCTMDRTENE 390
>gi|194333562|ref|YP_002015422.1| sun protein [Prosthecochloris aestuarii DSM 271]
gi|194311380|gb|ACF45775.1| sun protein [Prosthecochloris aestuarii DSM 271]
Length = 449
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 54/77 (70%), Gaps = 4/77 (5%)
Query: 245 LQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQK 304
+Q LP ++ LDP++GE +LDMCAAPGGK+T +A L+ + G+V+AVDR NK I++
Sbjct: 243 VQALPCLL----LDPEEGETVLDMCAAPGGKSTFLAELMHNSGKVIAVDRYPNKCRTIRE 298
Query: 305 LAAEMGLKCITTYKLDA 321
A++M + ITT DA
Sbjct: 299 RASQMAISVITTIDSDA 315
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 39/76 (51%), Gaps = 11/76 (14%)
Query: 420 GFSPNSFDRVLLDAPCSALGL---RP--RLFAAEETIQSLRNHGKYQRRMFDQAVQLVRP 474
G SP ++LLDAPCS G+ RP R E I L Q + + A L+
Sbjct: 321 GISPA---KILLDAPCSGTGVLARRPELRWKMNREKITQL---VALQESLLNHAATLLPA 374
Query: 475 GGIIVYSTCTINPGEN 490
GG++VYSTC+I EN
Sbjct: 375 GGVLVYSTCSIEEEEN 390
>gi|416406060|ref|ZP_11688032.1| Ribosomal RNA small subunit methyltransferase B [Crocosphaera
watsonii WH 0003]
gi|357261147|gb|EHJ10449.1| Ribosomal RNA small subunit methyltransferase B [Crocosphaera
watsonii WH 0003]
Length = 452
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 59/95 (62%)
Query: 222 AVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIAS 281
A+ + +I +P+ +G +Q+ + + ++ LDPQ GE I+D CAAPGGKTT IA
Sbjct: 222 ALRLKGKIGTIPTLPGFSQGHWTVQDTSAQLVSYFLDPQPGETIIDACAAPGGKTTHIAE 281
Query: 282 LLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITT 316
L+ D+G + A DR+ +++ +Q+ A + L CI T
Sbjct: 282 LMGDQGTIFACDRTPSRLKKVQENAQRLELNCIET 316
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 424 NSFDRVLLDAPCSALGLRPRL--FAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYS 481
N DRVL+D PCS LG R +T +++R Q + +QA Q V+P G +VYS
Sbjct: 329 NKGDRVLVDVPCSGLGTLHRHPDIRWRQTPENIRELTSLQLEILNQAAQWVKPQGTLVYS 388
Query: 482 TCTINPGENEAL 493
TCT+NP EN+ +
Sbjct: 389 TCTLNPPENQEI 400
>gi|390453286|ref|ZP_10238814.1| ribosomal RNA small subunit methyltransferase B (rRNA
(cytosine-C(5)-)-methyltransferase) [Paenibacillus
peoriae KCTC 3763]
Length = 471
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 50/74 (67%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
++P SFDR+LLDAPCS G+ +P L ++ T Q +R+ + Q + D L++PGGI
Sbjct: 342 YAPASFDRILLDAPCSGFGVIRRKPDLRWSK-TEQDVRDITQLQHELLDSVAGLLKPGGI 400
Query: 478 IVYSTCTINPGENE 491
+VYSTCTI P ENE
Sbjct: 401 LVYSTCTIEPDENE 414
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 58/92 (63%), Gaps = 2/92 (2%)
Query: 232 LPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVA 291
L S+Y +G + +Q+ S++ A A+ P+ G +LD CAAPGGKT +A L++D+G ++A
Sbjct: 248 LTSWYT--DGLLSVQDESSMLVAEAVAPEPGMLVLDCCAAPGGKTAHMAELMKDQGRIIA 305
Query: 292 VDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323
D +K IQ+ A +GL+ + T DAL+
Sbjct: 306 NDLHAHKHHLIQEQADRLGLEAVETVTGDALE 337
>gi|383754590|ref|YP_005433493.1| putative ribosomal RNA small subunit methyltransferase B
[Selenomonas ruminantium subsp. lactilytica TAM6421]
gi|381366642|dbj|BAL83470.1| putative ribosomal RNA small subunit methyltransferase B
[Selenomonas ruminantium subsp. lactilytica TAM6421]
Length = 444
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 63/103 (61%), Gaps = 3/103 (2%)
Query: 219 EGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTA 278
EGI V H + L EG +Q+ S++ AH +DPQ GE I+D C+APGGKTT
Sbjct: 214 EGIRVTSHGALDDLAPLQ---EGLCQVQDESSMLVAHVVDPQPGELIIDCCSAPGGKTTH 270
Query: 279 IASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
+A+L+++EG +VA D +K+ I++ A +G+ I T +DA
Sbjct: 271 MAALMKNEGRIVAGDIYEHKLTRIEENAQRLGIDIIETNLIDA 313
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 8/70 (11%)
Query: 427 DRVLLDAPCSALGL---RP--RLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYS 481
DRVL+DAPCS LG+ +P R + E I +L Q + D A + ++ GG++VYS
Sbjct: 325 DRVLVDAPCSGLGVLRRKPDARWNKSAEEIAAL---PPLQGEILDSAAKALKAGGVLVYS 381
Query: 482 TCTINPGENE 491
TCTI+ EN+
Sbjct: 382 TCTIDRSEND 391
>gi|67924848|ref|ZP_00518244.1| Fmu, rRNA SAM-dependent methyltransferase [Crocosphaera watsonii WH
8501]
gi|67853307|gb|EAM48670.1| Fmu, rRNA SAM-dependent methyltransferase [Crocosphaera watsonii WH
8501]
Length = 452
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 59/95 (62%)
Query: 222 AVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIAS 281
A+ + +I +P+ +G +Q+ + + ++ LDPQ GE I+D CAAPGGKTT IA
Sbjct: 222 ALRLKGKIGTIPTLPGFSQGHWTVQDTSAQLVSYFLDPQPGETIIDACAAPGGKTTHIAE 281
Query: 282 LLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITT 316
L+ D+G + A DR+ +++ +Q+ A + L CI T
Sbjct: 282 LMGDQGTIFACDRTPSRLKKVQENAQRLELNCIET 316
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 424 NSFDRVLLDAPCSALGLRPRL--FAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYS 481
N DRVL+D PCS LG R +T +++R Q + +QA Q V+P G +VYS
Sbjct: 329 NKGDRVLVDVPCSGLGTLHRHPDIRWRQTPENIRELTSLQLEILNQAAQWVKPQGTLVYS 388
Query: 482 TCTINPGENEAL 493
TCT+NP EN+ +
Sbjct: 389 TCTLNPPENQEI 400
>gi|240103511|ref|YP_002959820.1| SAM-dependent tRNA/rRNA cytosine-C5 methylase [Thermococcus
gammatolerans EJ3]
gi|239911065|gb|ACS33956.1| SAM-dependent tRNA/rRNA cytosine-C5 methylase [Thermococcus
gammatolerans EJ3]
Length = 451
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 55/81 (67%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
EG+ +Q+L S AH L+P+ GER+LD+ AAPG KT ASL+ ++GE+VAVD S++++
Sbjct: 240 EGKFVIQDLASAYVAHVLNPEPGERVLDLAAAPGSKTFHAASLMENKGEIVAVDYSYDRL 299
Query: 300 MDIQKLAAEMGLKCITTYKLD 320
M +++ +G+K + D
Sbjct: 300 MRMKEKMKILGIKNVKLVHAD 320
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 426 FDRVLLDAPCSALGLRPRLFAAEETI--QSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTC 483
FDR++LDAPCS+ G + + + ++ QR M A + +R GG++ YSTC
Sbjct: 330 FDRIILDAPCSSSGTYRQFPEVKWRFDERKIKRIISVQRNMLRNAYENLRDGGVMTYSTC 389
Query: 484 TINPGENE 491
+I E+E
Sbjct: 390 SIRIDEDE 397
>gi|323701798|ref|ZP_08113469.1| sun protein [Desulfotomaculum nigrificans DSM 574]
gi|333923478|ref|YP_004497058.1| sun protein [Desulfotomaculum carboxydivorans CO-1-SRB]
gi|323533334|gb|EGB23202.1| sun protein [Desulfotomaculum nigrificans DSM 574]
gi|333749039|gb|AEF94146.1| sun protein [Desulfotomaculum carboxydivorans CO-1-SRB]
Length = 453
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 64/105 (60%), Gaps = 3/105 (2%)
Query: 217 ASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKT 276
A EG+ ++ LPSF EG +Q+ S++ AHAL+P G RI+D+ +APGGKT
Sbjct: 214 APEGLHLNGFLSYQSLPSFQ---EGLFQVQDESSMLVAHALNPASGARIIDVASAPGGKT 270
Query: 277 TAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
T +A L++D GE+VAVD +K+ I++ +G+ I T DA
Sbjct: 271 THLAQLMKDRGEIVAVDIHPHKLELIKENCQRLGINSIRTLLADA 315
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Query: 424 NSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
N D VL+DAPCS LG+ RP ++ Q L + QR + + A +RPGG+++Y
Sbjct: 324 NWADYVLVDAPCSGLGVLRRRPDARWRKDPSQ-LPGIVRLQREILESASTYLRPGGVLIY 382
Query: 481 STCTINPGEN 490
STCTI EN
Sbjct: 383 STCTITREEN 392
>gi|310642738|ref|YP_003947496.1| ribosomal RNA small subunit methyltransferase b [Paenibacillus
polymyxa SC2]
gi|386041819|ref|YP_005960773.1| sun protein [Paenibacillus polymyxa M1]
gi|309247688|gb|ADO57255.1| Ribosomal RNA small subunit methyltransferase B [Paenibacillus
polymyxa SC2]
gi|343097857|emb|CCC86066.1| sun protein [Paenibacillus polymyxa M1]
Length = 471
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 51/78 (65%), Gaps = 4/78 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
++P SFDR+LLDAPCS G+ +P L ++ T + +R+ + Q + D L++PGGI
Sbjct: 342 YAPASFDRILLDAPCSGFGVIRRKPDLRWSK-TAEDVRDITQLQHELLDSVAGLLKPGGI 400
Query: 478 IVYSTCTINPGENEALCA 495
+VYSTCTI P ENE A
Sbjct: 401 LVYSTCTIEPDENEGQLA 418
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 57/96 (59%), Gaps = 2/96 (2%)
Query: 232 LPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVA 291
L S+Y +G + +Q+ S++ A A+ P+ G +LD CAAPGGKT +A L++D G +VA
Sbjct: 248 LTSWY--TDGLLSVQDESSMLVAEAVAPEPGMTVLDCCAAPGGKTAHMAELMKDRGRIVA 305
Query: 292 VDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRR 327
D +K I++ A+ +GL + T DAL R
Sbjct: 306 NDLHAHKHQLIREQASRLGLDAVETVTGDALDLKER 341
>gi|392394789|ref|YP_006431391.1| ribosomal RNA small subunit methyltransferase RsmB
[Desulfitobacterium dehalogenans ATCC 51507]
gi|390525867|gb|AFM01598.1| ribosomal RNA small subunit methyltransferase RsmB
[Desulfitobacterium dehalogenans ATCC 51507]
Length = 453
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 68/127 (53%), Gaps = 12/127 (9%)
Query: 195 FERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTA 254
ER G+ + G R E + ++ + +LPSF EG +Q+ S + A
Sbjct: 199 LEREGVKVTLGE---------RVPESLVIEEFGSLDKLPSFQ---EGLFTVQDESSQLIA 246
Query: 255 HALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCI 314
H L+PQ G+++LD C APGGKTT +A + + GE++A D +KV I+ L+A +G+ I
Sbjct: 247 HVLNPQAGQKVLDACGAPGGKTTHLAQRMENRGEILAFDIHPHKVKLIEDLSARLGITII 306
Query: 315 TTYKLDA 321
DA
Sbjct: 307 HPQAGDA 313
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 46/84 (54%), Gaps = 8/84 (9%)
Query: 412 GGRAENSKGFSPNSFDRVLLDAPCSALGL-----RPRLFAAEETIQSLRNHGKYQRRMFD 466
G A G +S+ +VL+DAPCS LG+ R EE I++L + Q + +
Sbjct: 310 AGDARELAGVEDSSYHKVLVDAPCSGLGVIRRRADMRWNKEEEEIKAL---PELQLALLE 366
Query: 467 QAVQLVRPGGIIVYSTCTINPGEN 490
+A Q V GG +VYSTCTI P EN
Sbjct: 367 RAAQCVALGGELVYSTCTIEPEEN 390
>gi|302348820|ref|YP_003816458.1| RNA (cytosine-C(5)-)-methyltransferase [Acidilobus saccharovorans
345-15]
gi|302329232|gb|ADL19427.1| RNA (Cytosine-C(5)-)-methyltransferase [Acidilobus saccharovorans
345-15]
Length = 382
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 66/262 (25%), Positives = 110/262 (41%), Gaps = 64/262 (24%)
Query: 37 KALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTISESQI 96
++L RP +RVNTLK T +L ++ SG+ + Q+
Sbjct: 29 ESLLRPPRRFYLRVNTLKADT----TTMLDLLSASGTR---------------FYVDEQL 69
Query: 97 PGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEK 156
P Y +++ GP +D K V+ +K AE+V G+ +Y PGV+ + V+
Sbjct: 70 P---YAIWIDVKGPFKVDLH------DKVVVADKKSAESVYVGSDLYGPGVLR-AERVKA 119
Query: 157 GDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFR 216
GD V + +P + +G A+M +
Sbjct: 120 GDEVTIVTVDGRP--------------------------------VAEGVAIMDGKEMAE 147
Query: 217 ASEGIAVDMHNRIFQLPSFYDVL---EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPG 273
+G+AV + ++ P ++ EG I+ Q+LPS+ P GE I+D AAPG
Sbjct: 148 HKKGVAVKVTKSVYATPKVRELPGFNEGLIYSQSLPSMWAVAIASPSPGETIIDFNAAPG 207
Query: 274 GKTTAIASLLRDEGEVVAVDRS 295
GKT+ A L + ++A+DR+
Sbjct: 208 GKTSLAAQLAGRKSRIIAIDRA 229
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 427 DRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTIN 486
D VL+D PC+ LG+ P+L+ + ++ +YQR+ +A + ++PGG +VYSTCT+
Sbjct: 268 DLVLIDPPCTNLGVIPKLYDTKRLADAV-VLSRYQRQFISEAWKALKPGGRLVYSTCTLT 326
Query: 487 PGENEA 492
ENEA
Sbjct: 327 DVENEA 332
>gi|229918581|ref|YP_002887227.1| sun protein [Exiguobacterium sp. AT1b]
gi|229470010|gb|ACQ71782.1| sun protein [Exiguobacterium sp. AT1b]
Length = 443
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 49/74 (66%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F SFDR+LLD PCS LG+ +P + ++ Q L N K QR++ D + L++PGG
Sbjct: 314 FEEESFDRILLDVPCSGLGVIRRKPDIKWTKDKAQ-LENLPKIQRQIIDAVLPLLKPGGT 372
Query: 478 IVYSTCTINPGENE 491
+VYSTCTI+P ENE
Sbjct: 373 LVYSTCTIDPSENE 386
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
EG + +Q+ S++ A AL K + ILD CAAPGGK A ++ G + A+D +K
Sbjct: 227 EGLLSIQDESSMIVADALGVSKDDVILDACAAPGGKAMHTAERMQG-GSLTALDLHPHKA 285
Query: 300 MDIQKLAAEMGLKCITTYKLDA-LKAVRRKNESND 333
I + A + + +T LDA L R + ES D
Sbjct: 286 KLIDQQAKRLHINGVTALALDARLAGERFEEESFD 320
>gi|337283863|ref|YP_004623337.1| nucleolar protein [Pyrococcus yayanosii CH1]
gi|334899797|gb|AEH24065.1| nucleolar protein [Pyrococcus yayanosii CH1]
Length = 313
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 52/73 (71%), Gaps = 2/73 (2%)
Query: 424 NSFDRVLLDAPCSALGL--RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYS 481
N+FDRVLLDAPCS++G+ + FA +I + H + QR++ A + ++PGG++VYS
Sbjct: 180 NTFDRVLLDAPCSSVGMVRKNFKFAYTWSIHKVLYHTRIQRKLILAAYRALKPGGVLVYS 239
Query: 482 TCTINPGENEALC 494
TCT++P ENEA+
Sbjct: 240 TCTVDPLENEAVV 252
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 35/58 (60%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNK 298
G + Q S++ L+P+ GE ILDM AAPG KTT IA + +EG ++A D ++
Sbjct: 92 GLVIPQEASSMIPPVVLEPKPGELILDMAAAPGSKTTQIAQYMENEGCIIANDAKRDR 149
>gi|57642239|ref|YP_184717.1| tRNA/rRNA cytosine-C5-methylase NOL1/NOP2/Sun family protein
[Thermococcus kodakarensis KOD1]
gi|57160563|dbj|BAD86493.1| tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family, fused to
N-terminal NusB regulator domain [Thermococcus
kodakarensis KOD1]
Length = 450
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 54/75 (72%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
EG+ +Q+L S AH L P+ GER+LD+ AAPG KT A+L+ ++GE+VAVD S++++
Sbjct: 240 EGKFVIQDLASAYVAHVLSPEPGERLLDLAAAPGSKTFHAAALMENKGEIVAVDYSYDRL 299
Query: 300 MDIQKLAAEMGLKCI 314
M +++ A +G+K +
Sbjct: 300 MRMKEKAKVLGVKNV 314
Score = 42.7 bits (99), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 426 FDRVLLDAPCSALGLRPRLFAAEETIQS--LRNHGKYQRRMFDQAVQLVRPGGIIVYSTC 483
FD+++LDAPCS+ G + + ++ QR M A + +R GG + YSTC
Sbjct: 330 FDKIILDAPCSSSGTYRQFPEVKWRFDEAKIKKIISVQRNMLRNAYENLREGGEMTYSTC 389
Query: 484 TINPGENE 491
+I E+E
Sbjct: 390 SIRIDEDE 397
>gi|317967915|ref|ZP_07969305.1| sun protein [Synechococcus sp. CB0205]
Length = 441
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 59/95 (62%), Gaps = 2/95 (2%)
Query: 236 YDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRS 295
YD EG +Q+ + A LDP+ GER+LD CAAPGGK+T +A L+ D+G+V+A+DR
Sbjct: 236 YD--EGHWCVQDRSAQTIAPLLDPKPGERVLDACAAPGGKSTHLAELMGDQGQVLALDRG 293
Query: 296 HNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNE 330
++ + + + +GL CI T DA++ V E
Sbjct: 294 EARLRRVARNSDRLGLGCIETRHGDAVELVSEAPE 328
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 426 FDRVLLDAPCSALGLRPRLFAAEETIQSLRNHG--KYQRRMFDQAVQLVRPGGIIVYSTC 483
FD +L+DAPCS LG R A I G QR++ + + L++P G +VY+TC
Sbjct: 333 FDALLIDAPCSGLGTLARHADARWRIDPAAIEGLVTLQRQLLEGLLPLLKPAGRLVYATC 392
Query: 484 TINPGEN 490
T++P EN
Sbjct: 393 TVHPEEN 399
>gi|222054190|ref|YP_002536552.1| sun protein [Geobacter daltonii FRC-32]
gi|221563479|gb|ACM19451.1| sun protein [Geobacter daltonii FRC-32]
Length = 448
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 63/107 (58%), Gaps = 3/107 (2%)
Query: 220 GIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAI 279
I +++ + +L SF D G F+Q+ S + A L PQ GER+LD CAAPGGK+T +
Sbjct: 216 AIRINLSGSVSRLKSFRD---GLFFVQDESSQLAAMFLGPQAGERVLDACAAPGGKSTQL 272
Query: 280 ASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVR 326
A L+ D GE++A D K+ + + AA +G+ I T LD + ++
Sbjct: 273 AQLMGDRGEILACDVIGRKLKLVDENAARLGISSIRTVLLDTARPLK 319
Score = 45.1 bits (105), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 10/81 (12%)
Query: 419 KGFSPNSFDRVLLDAPCSALGLRPR------LFAAEETIQSLRNHGKYQRRMFDQAVQLV 472
K + DR+LLDAPCS LG+ R +A + I + K QR + + +
Sbjct: 319 KSLERSPLDRILLDAPCSGLGVIRRNPEGKWWKSAADVI----DLAKGQRALLENLAGHL 374
Query: 473 RPGGIIVYSTCTINPGENEAL 493
R GG ++Y+TC+ ENEA+
Sbjct: 375 RSGGSLLYATCSTAVEENEAV 395
>gi|375309204|ref|ZP_09774485.1| ribosomal RNA small subunit methyltransferase B (rRNA
(cytosine-C(5)-)-methyltransferase) [Paenibacillus sp.
Aloe-11]
gi|375078513|gb|EHS56740.1| ribosomal RNA small subunit methyltransferase B (rRNA
(cytosine-C(5)-)-methyltransferase) [Paenibacillus sp.
Aloe-11]
Length = 471
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 50/74 (67%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
++P SFDR+LLDAPCS G+ +P L ++ T Q +R+ + Q + D L++PGGI
Sbjct: 342 YAPASFDRILLDAPCSGFGVIRRKPDLRWSK-TEQDVRDITQLQYELLDSVAGLLKPGGI 400
Query: 478 IVYSTCTINPGENE 491
+VYSTCTI P ENE
Sbjct: 401 LVYSTCTIEPDENE 414
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 57/92 (61%), Gaps = 2/92 (2%)
Query: 232 LPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVA 291
L S+Y +G + +Q+ S++ A A+ P+ G +LD CAAPGGKT +A L++D+G ++A
Sbjct: 248 LTSWYT--DGLLSVQDESSMLVAEAVAPEPGMLVLDCCAAPGGKTAHMAELMKDQGRIIA 305
Query: 292 VDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323
D +K IQ+ A +GL + T DAL+
Sbjct: 306 NDLHAHKHHLIQEQADRLGLDAVETVTGDALE 337
>gi|403667672|ref|ZP_10932972.1| ribosomal RNA small subunit methyltransferase B [Kurthia sp. JC8E]
Length = 454
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 54/88 (61%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
EG I +Q+ S++ A+ALD Q G R+ DMCAAPGGKTT IA + +EG V+A D +K+
Sbjct: 236 EGVITIQDESSMIPAYALDVQPGMRVYDMCAAPGGKTTHIAEKMNNEGTVIATDLHKHKI 295
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRR 327
+ + A +GL I LD KA +
Sbjct: 296 KLVDESAKRLGLSIIEAQMLDGRKATEQ 323
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 69/123 (56%), Gaps = 12/123 (9%)
Query: 376 EKVSNEKGVERTYVSKADTR---KNMRRMRNGPGRNQCLGGRAENSKGFSPNSFDRVLLD 432
EK++NE V T + K + ++ +R+ Q L GR + ++ F SFDR+L+D
Sbjct: 277 EKMNNEGTVIATDLHKHKIKLVDESAKRLGLSIIEAQMLDGR-KATEQFEKQSFDRILVD 335
Query: 433 APCSALGL---RP--RLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINP 487
APCS LG+ +P + +E +SL K Q + D A +L++P G +VYSTCTI+
Sbjct: 336 APCSGLGVIRRKPDIKYTKSESDFESLH---KIQLDLLDSAYELLKPQGKMVYSTCTIDK 392
Query: 488 GEN 490
EN
Sbjct: 393 MEN 395
>gi|325680270|ref|ZP_08159830.1| ribosomal RNA small subunit methyltransferase B [Ruminococcus albus
8]
gi|324107979|gb|EGC02235.1| ribosomal RNA small subunit methyltransferase B [Ruminococcus albus
8]
Length = 429
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 50/76 (65%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
EG +Q++ S + ALDPQ G+ +LD+CAAPGGKT IA ++ +EG V+A D N+V
Sbjct: 229 EGRFHVQDIASQLCCKALDPQAGDTVLDLCAAPGGKTFTIAEMMGNEGRVLAFDLHPNRV 288
Query: 300 MDIQKLAAEMGLKCIT 315
I+ A +GL C+T
Sbjct: 289 KLIKSGADRLGLSCVT 304
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 410 CLGGRAENSKGFSPN--SFDRVLLDAPCSALG-LRPRLFAAEETIQSLRNHGKYQRRMFD 466
C+ N+K F+ DRVL+DAPCS LG +R + + Q + D
Sbjct: 302 CVTAEVNNAKVFNDKLPPADRVLVDAPCSGLGVIRRKPEIKYKDPADFERLPAVQYEILD 361
Query: 467 QAVQLVRPGGIIVYSTCTINPGENE 491
A + V+ GG++VYSTCT++ EN+
Sbjct: 362 TASKYVKAGGLMVYSTCTVSRAEND 386
>gi|406898154|gb|EKD41861.1| RNA methylase, NOL1/NOP2/sun family, partial [uncultured bacterium]
Length = 348
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 58/90 (64%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G I+LQ+L S + LDP+ G+R+LDMCA+PGGKTT +A+L++++GE++A + +
Sbjct: 124 KGWIYLQSLSSQIPPFVLDPKPGDRVLDMCASPGGKTTQMAALMQNQGEMLACEPEQRRF 183
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRRKN 329
++ + G + +LDALK +N
Sbjct: 184 ERLESNVKKQGASIVRCIRLDALKLNLEQN 213
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 7/73 (9%)
Query: 426 FDRVLLDAPCSALGLRPRLFAAEETIQS-----LRNHGKYQRRMFDQAVQLVRPGGIIVY 480
FD++LLDAPCS+ G L T Q + Q+R +A++L++ GG +VY
Sbjct: 216 FDKILLDAPCSSEGTF--LLNEPPTWQHWSLGFIEKQAALQKRFLQKAIELLKEGGTLVY 273
Query: 481 STCTINPGENEAL 493
STC ++P ENE +
Sbjct: 274 STCALSPEENEGV 286
>gi|260892752|ref|YP_003238849.1| sun protein [Ammonifex degensii KC4]
gi|260864893|gb|ACX51999.1| sun protein [Ammonifex degensii KC4]
Length = 452
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 61/105 (58%), Gaps = 3/105 (2%)
Query: 217 ASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKT 276
A EGI V + LPS+ EG ++Q+ S++ AHAL P G +LD+C APGGK
Sbjct: 213 APEGIRVQGFFDLQHLPSYQ---EGLFYIQDESSMLAAHALAPASGSFVLDVCGAPGGKA 269
Query: 277 TAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
T +A L+RD G ++ VD +++ + + +GLK + T + DA
Sbjct: 270 THLAELMRDSGRILVVDIYAHRLALVVANSRRLGLKSVETLQADA 314
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 20/75 (26%)
Query: 427 DRVLLDAPCSALGL-----------RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPG 475
D VL D PCS LG+ P +F T+Q + + + A VRPG
Sbjct: 326 DYVLADVPCSGLGVLRRKPDIRWRKEPEIFPGLVTLQ---------QEILESAAACVRPG 376
Query: 476 GIIVYSTCTINPGEN 490
G+++Y TCT+ EN
Sbjct: 377 GVLLYCTCTLGEAEN 391
>gi|428776022|ref|YP_007167809.1| sun protein [Halothece sp. PCC 7418]
gi|428690301|gb|AFZ43595.1| sun protein [Halothece sp. PCC 7418]
Length = 447
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 67/118 (56%), Gaps = 8/118 (6%)
Query: 215 FRASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGG 274
R S G+ +I QLP F EG +Q+ + + ++ L PQ GE I+D CAAPGG
Sbjct: 219 LRLSSGVG-----KIEQLPGFT---EGWWTVQDFSAQLVSYLLSPQAGETIIDACAAPGG 270
Query: 275 KTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESN 332
KTT IA L+ DEG++ A DR+ +++ + A + LK I T DA + + +N ++
Sbjct: 271 KTTHIAELMGDEGKIWACDRAESRLKKVTNNAQRLQLKSIETRVGDARELSQFQNTAD 328
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 424 NSFDRVLLDAPCSALGLRPRL--FAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYS 481
N+ DRVL+DAPCS LG R +T ++L K Q+ + V+P GI+VY+
Sbjct: 325 NTADRVLIDAPCSGLGTLHRRTDLRWRQTPENLVQLAKLQQEILTATATWVKPNGILVYA 384
Query: 482 TCTINPGENE 491
TCTINP ENE
Sbjct: 385 TCTINPLENE 394
>gi|389852843|ref|YP_006355077.1| nol1-nop2-sun family nucleolar protein I [Pyrococcus sp. ST04]
gi|388250149|gb|AFK23002.1| putative nol1-nop2-sun family nucleolar protein I [Pyrococcus sp.
ST04]
Length = 311
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 51/73 (69%), Gaps = 2/73 (2%)
Query: 424 NSFDRVLLDAPCSALGL--RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYS 481
N+FDRVLLDAPCS++G+ + FA ++ + H K Q+R+ A + ++PGG++VYS
Sbjct: 178 NTFDRVLLDAPCSSVGMIRKNFKFAKTWSVGKVYYHSKLQKRLILAAYKALKPGGVMVYS 237
Query: 482 TCTINPGENEALC 494
TCT++P ENE +
Sbjct: 238 TCTVDPVENEEVV 250
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 35/58 (60%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNK 298
G I Q S++ LDPQ GE ILDM AAPG KTT IA + ++G ++A D ++
Sbjct: 90 GLIIPQEASSMIPPVVLDPQPGEFILDMAAAPGSKTTQIAQYMENKGCIIANDAKRDR 147
>gi|392426904|ref|YP_006467898.1| ribosomal RNA small subunit methyltransferase RsmB
[Desulfosporosinus acidiphilus SJ4]
gi|391356867|gb|AFM42566.1| ribosomal RNA small subunit methyltransferase RsmB
[Desulfosporosinus acidiphilus SJ4]
Length = 452
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 54/81 (66%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G +Q+ S + AH + P+ G+R+LD C+APGGKTT +A +++DEG +VA D +K+
Sbjct: 232 GYFTVQDESSQLIAHVVSPEAGQRVLDACSAPGGKTTHLAQMMKDEGVIVAFDVHTHKLE 291
Query: 301 DIQKLAAEMGLKCITTYKLDA 321
I++LA +G+ CI T DA
Sbjct: 292 LIEQLAQRLGITCIETRLGDA 312
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 45/86 (52%), Gaps = 8/86 (9%)
Query: 413 GRAENSKGFSPNSFDRVLLDAPCSALG-LRP----RLFAAEETIQSLRNHGKYQRRMFDQ 467
G A + G P S RVL+DAPCS LG LR R AE IQ L Q + ++
Sbjct: 310 GDARDLTGIEPCSQQRVLVDAPCSGLGVLRRRSDLRWQKAEGDIQDL---PVLQLAILER 366
Query: 468 AVQLVRPGGIIVYSTCTINPGENEAL 493
A V GG ++YSTCTI P EN L
Sbjct: 367 AASCVDVGGDLIYSTCTIEPEENFEL 392
>gi|186684748|ref|YP_001867944.1| sun protein [Nostoc punctiforme PCC 73102]
gi|186467200|gb|ACC83001.1| sun protein [Nostoc punctiforme PCC 73102]
Length = 487
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 65/104 (62%), Gaps = 3/104 (2%)
Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
I +LP F EG +Q+ + + +H LDPQ GE ++D+CAAPGGKTT IA L+ D G+
Sbjct: 262 IQKLPGFK---EGWWTVQDASAQLVSHLLDPQPGEVVIDVCAAPGGKTTHIAELMADSGK 318
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESN 332
+ A DR+ +++ +Q+ + + L+ I Y D+ + + +N ++
Sbjct: 319 IWACDRTASRLRKLQENSQRLNLQSIQIYTGDSRHSNQFQNTAD 362
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 409 QCLGGRAENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAE--ETIQSLRNHGKYQRRMFD 466
Q G + +S F N+ DRVLLDAPCS LG R A +T +S+R Q+ +
Sbjct: 345 QIYTGDSRHSNQFQ-NTADRVLLDAPCSGLGTMHRHADARWRQTPESVRELSVLQKELLT 403
Query: 467 QAVQLVRPGGIIVYSTCTINPGENEALCA 495
V+ GG++VY+TCT++P ENE + +
Sbjct: 404 HTSTFVKAGGVLVYATCTLHPAENEEVIS 432
>gi|374582947|ref|ZP_09656041.1| ribosomal RNA small subunit methyltransferase RsmB
[Desulfosporosinus youngiae DSM 17734]
gi|374419029|gb|EHQ91464.1| ribosomal RNA small subunit methyltransferase RsmB
[Desulfosporosinus youngiae DSM 17734]
Length = 452
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 81/154 (52%), Gaps = 10/154 (6%)
Query: 175 WGLGITRGTVLQGSQTDPYYFERSGLYIGQG--TAMMSRAGIF-----RASEGIAVDMHN 227
WG+ T ++ P + + L I + T + GI R E + +
Sbjct: 162 WGIEETEALCKVNNEPSPTWIRTNTLKISREDLTERLREEGITVQLGSRVPESLQISNFG 221
Query: 228 RIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEG 287
+ QL SF EG +Q+ S + AH ++PQ G+ +LD C+APGGK+T +A ++++EG
Sbjct: 222 ALDQLDSFR---EGLFTVQDESSQLVAHVVNPQPGQSVLDACSAPGGKSTHLAQMMKNEG 278
Query: 288 EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
+++A D +K+ +++LA ++G+ I T DA
Sbjct: 279 KILAFDIHAHKLELVEQLAQKLGITIIETQVGDA 312
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 413 GRAENSKGFSPNSFDRVLLDAPCSALGL--RPRLFAAEETIQSLRNHGKYQRRMFDQAVQ 470
G A + G S D VL+DAPCS LG+ R ++ Q L++ Q + ++A
Sbjct: 310 GDARDLPGIRLESQDCVLVDAPCSGLGIIRRKADLRWQKEEQGLKDLPALQLAILERAAS 369
Query: 471 LVRPGGIIVYSTCTINPGENEAL 493
V+ GG +VYSTCT P EN L
Sbjct: 370 CVKNGGTLVYSTCTTEPDENFEL 392
>gi|33860983|ref|NP_892544.1| Sun protein (Fmu protein) [Prochlorococcus marinus subsp. pastoris
str. CCMP1986]
gi|33639715|emb|CAE18885.1| Sun protein (Fmu protein) [Prochlorococcus marinus subsp. pastoris
str. CCMP1986]
Length = 437
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 77/144 (53%), Gaps = 10/144 (6%)
Query: 209 MSRAGIFRASEGIAVDMHNR-IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILD 267
++ I + GIA++ + R I +LP + D G +Q+ S A L+P KGE+ILD
Sbjct: 206 INATAISQLKNGIALNSNPRSIKKLPGYSD---GLWVVQDRSSQWVAPLLNPMKGEKILD 262
Query: 268 MCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRR 327
C+APG KTT +A L D+ E++AVDRS ++ +Q + +K + T K DA V
Sbjct: 263 ACSAPGSKTTHLAQLANDDAEILAVDRSEKRLKILQSNLERLNIKSVKTLKADATNLV-- 320
Query: 328 KNESNDEPNMCNSKDNNYITSQTS 351
+ +PN+ + D I + S
Sbjct: 321 ----DIQPNLISYFDKILIDAPCS 340
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 11/93 (11%)
Query: 409 QCLGGRAENSKGFSPN---SFDRVLLDAPCSALGLRPR-----LFAAEETIQSLRNHGKY 460
+ L A N PN FD++L+DAPCS +G R +++ I L
Sbjct: 310 KTLKADATNLVDIQPNLISYFDKILIDAPCSGIGTLARNPDSRWSLSKDKINQL---ILL 366
Query: 461 QRRMFDQAVQLVRPGGIIVYSTCTINPGENEAL 493
Q R+ + + L++ G +VYSTCTI P EN L
Sbjct: 367 QERLLESVLPLLKRNGTLVYSTCTICPEENNFL 399
>gi|428771628|ref|YP_007163418.1| sun protein [Cyanobacterium aponinum PCC 10605]
gi|428685907|gb|AFZ55374.1| sun protein [Cyanobacterium aponinum PCC 10605]
Length = 455
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 59/93 (63%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G +Q+ + + H L+PQ GE I+D CAAPGGKTT IA L+ D+G+V+A+D ++
Sbjct: 241 QGLFTIQDASAQLVTHLLNPQAGETIIDACAAPGGKTTHIAELMGDKGKVIAIDTYAKRL 300
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRRKNESN 332
I++ A +GL CI + D+ + +N+++
Sbjct: 301 EKIKENATRLGLTCIEVKEGDSSELTEWENQAD 333
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Query: 424 NSFDRVLLDAPCSALGL---RP--RLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGII 478
N DRVL+D PCS LG P R E I+ L + Q+++ A + V+ GGI+
Sbjct: 330 NQADRVLVDVPCSGLGTLHTNPDIRWRKKPEEIEKLT---RLQQKILTNASKWVKNGGIL 386
Query: 479 VYSTCTINPGENEALCA 495
VY+TCT+N ENE +
Sbjct: 387 VYATCTLNQKENENIVT 403
>gi|126656069|ref|ZP_01727453.1| Fmu, rRNA SAM-dependent methyltransferase [Cyanothece sp. CCY0110]
gi|126622349|gb|EAZ93055.1| Fmu, rRNA SAM-dependent methyltransferase [Cyanothece sp. CCY0110]
Length = 452
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 55/85 (64%), Gaps = 3/85 (3%)
Query: 232 LPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVA 291
LP F+ EG +Q+ + + ++ LDPQ GE I+D CAAPGGKTT IA L+ D+G V+A
Sbjct: 235 LPGFH---EGHWTIQDSSAQLVSYLLDPQPGETIIDACAAPGGKTTHIAELMGDQGTVIA 291
Query: 292 VDRSHNKVMDIQKLAAEMGLKCITT 316
DR+ +++ +Q+ A + L I T
Sbjct: 292 CDRTPSRLKKVQQNAQRLQLNSIQT 316
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 427 DRVLLDAPCSALGLRPRL--FAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCT 484
DRVL+D PCS LG R +T + ++ + Q+ + QA Q V+P G +VY+TCT
Sbjct: 332 DRVLVDVPCSGLGTLHRHPDIRWRQTPEQIQELSRLQQEILTQAAQWVKPQGTLVYATCT 391
Query: 485 INPGENEAL 493
+NP EN+ +
Sbjct: 392 LNPTENQQI 400
>gi|15615070|ref|NP_243373.1| hypothetical protein BH2507 [Bacillus halodurans C-125]
gi|10175127|dbj|BAB06226.1| BH2507 [Bacillus halodurans C-125]
Length = 450
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 64/109 (58%), Gaps = 11/109 (10%)
Query: 227 NRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDE 286
R+FQ +GE+ +Q+ S++ A A+ P+ GERILD CAAPGGK+T +A + E
Sbjct: 226 TRLFQ--------DGELTIQDESSMLVARAVAPRPGERILDACAAPGGKSTHMAERMDGE 277
Query: 287 GEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEP 335
G +V++D +KV I++ A +GL I LDA KA + DEP
Sbjct: 278 GTIVSLDMHRHKVKLIEEQAKRLGLDNIKAQTLDARKA---REVFADEP 323
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 50/80 (62%), Gaps = 8/80 (10%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RP--RLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPG 475
F+ FDR+L+DAPCS LG+ +P + E ++++RN Q + +LV+PG
Sbjct: 319 FADEPFDRILVDAPCSGLGVIRRKPDIKWTKREADMKAIRN---VQLDILSSVAKLVKPG 375
Query: 476 GIIVYSTCTINPGENEALCA 495
G+++YSTCTI+ ENE + A
Sbjct: 376 GLLIYSTCTIDQLENEQVIA 395
>gi|404370888|ref|ZP_10976204.1| ribosomal RNA small subunit methyltransferase B [Clostridium sp.
7_2_43FAA]
gi|226912989|gb|EEH98190.1| ribosomal RNA small subunit methyltransferase B [Clostridium sp.
7_2_43FAA]
Length = 439
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 56/84 (66%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
EG I +Q+ +++ A LD ++G+++LD+CAAPGGKTT IA LL + GEV+A D NK+
Sbjct: 226 EGLITVQDESAMLVAPLLDLKEGDKVLDLCAAPGGKTTHIAELLANSGEVLAFDLHENKL 285
Query: 300 MDIQKLAAEMGLKCITTYKLDALK 323
I++ A +GL I +DA K
Sbjct: 286 SLIEENAKRLGLNNIVCKAMDATK 309
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 44/68 (64%), Gaps = 4/68 (5%)
Query: 427 DRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTC 483
D+VL+D PCS LG+ +P + +T Q L++ QR + + A Q ++PGG +VYSTC
Sbjct: 319 DKVLIDVPCSGLGIIRKKPEI-KWNKTRQQLKDLVPIQREIMENAWQYLKPGGTLVYSTC 377
Query: 484 TINPGENE 491
T+N ENE
Sbjct: 378 TLNKEENE 385
>gi|229104427|ref|ZP_04235096.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
Rock3-28]
gi|228679125|gb|EEL33333.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
Rock3-28]
Length = 354
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 68/116 (58%), Gaps = 10/116 (8%)
Query: 217 ASEGIAV---DMHNRIFQLPSFYDVLEGEIF------LQNLPSIVTAHALDPQKGERILD 267
ASEGI D+ N Q+ +V E F +Q+ S++ A ALDP +GE +LD
Sbjct: 106 ASEGIEAKSGDLSNDAIQIER-GNVAHTEAFKKGFLSIQDESSMLVARALDPNEGETVLD 164
Query: 268 MCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323
CAAPGGKTT IA L+ G+V+++D +KV I++ A +GL+ I T LDA K
Sbjct: 165 SCAAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLENIETKALDARK 220
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F+ +FD++L+DAPCS G+ +P + ++ S R Q + ++ L++ GG
Sbjct: 225 FANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSER-LSTIQLAILEKIAPLLKQGGR 283
Query: 478 IVYSTCTINPGENE 491
+VYSTCTI ENE
Sbjct: 284 LVYSTCTIEKIENE 297
>gi|329926565|ref|ZP_08280978.1| ribosomal RNA small subunit methyltransferase B [Paenibacillus sp.
HGF5]
gi|328939106|gb|EGG35469.1| ribosomal RNA small subunit methyltransferase B [Paenibacillus sp.
HGF5]
Length = 442
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 48/78 (61%), Gaps = 4/78 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F P SFDR+LLDAPCS LG+ +P L + + + Q R+ + L+RPGGI
Sbjct: 311 FEPASFDRILLDAPCSGLGVIRRKPDLKWGKSQ-EDIHEIAALQLRLLESVSTLLRPGGI 369
Query: 478 IVYSTCTINPGENEALCA 495
+VYSTCTI P ENE + +
Sbjct: 370 LVYSTCTIEPMENEGVIS 387
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 52/88 (59%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G I +Q+ S++ A A+ P+ G R+LD CAAPGGK+ + L++DEG +VA D +K
Sbjct: 223 DGMISIQDESSMLVAEAVQPEPGMRVLDCCAAPGGKSAHMGELMKDEGSIVANDIHAHKG 282
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRR 327
I A+ +GL I+ DAL R
Sbjct: 283 KLISDQASRLGLDSISIVTGDALDLADR 310
>gi|261405800|ref|YP_003242041.1| sun protein [Paenibacillus sp. Y412MC10]
gi|261282263|gb|ACX64234.1| sun protein [Paenibacillus sp. Y412MC10]
Length = 442
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 48/78 (61%), Gaps = 4/78 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F P SFDR+LLDAPCS LG+ +P L + + + Q R+ + L+RPGGI
Sbjct: 311 FEPASFDRILLDAPCSGLGVIRRKPDLKWGKSQ-EDIHEIAALQLRLLESVSTLLRPGGI 369
Query: 478 IVYSTCTINPGENEALCA 495
+VYSTCTI P ENE + +
Sbjct: 370 LVYSTCTIEPRENEGVVS 387
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 51/88 (57%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
EG I +Q+ S++ A A+ P+ G R+LD CAAPGGK+ + L+ DEG +VA D +K
Sbjct: 223 EGMISIQDESSMLVAEAVQPEPGMRVLDCCAAPGGKSAHMGELMNDEGSIVANDIHAHKG 282
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRR 327
I A+ +GL I+ DAL R
Sbjct: 283 KLISDQASRLGLDSISIVTGDALDLADR 310
>gi|385808959|ref|YP_005845355.1| ribosomal RNA small subunit methyltransferase B [Ignavibacterium
album JCM 16511]
gi|383801007|gb|AFH48087.1| Ribosomal RNA small subunit methyltransferase B [Ignavibacterium
album JCM 16511]
Length = 482
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 65/113 (57%), Gaps = 13/113 (11%)
Query: 229 IFQLPSFYDVLEGEIF------LQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASL 282
FQL + ++ E F +Q+ + + LD + G R+LDMCAAPGGKT +A+L
Sbjct: 255 FFQLQNLTNITAWEYFAKGYFNIQDESTGLACKLLDVKPGMRVLDMCAAPGGKTAFLAAL 314
Query: 283 LRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEP 335
++D+GE+VA+D+ ++ +++ +GL C+ T + DAL E DEP
Sbjct: 315 MQDKGEIVAIDKFEARLKLLRRNNERLGLTCVRTVESDAL-------EYEDEP 360
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 4/105 (3%)
Query: 389 VSKADTRKNMRRMRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGL---RPRLF 445
+ K + R + R N C+ ++ + FDRVL D PCS G +P +
Sbjct: 324 IDKFEARLKLLRRNNERLGLTCVRTVESDALEYEDEPFDRVLADVPCSGTGTLSKKPDI- 382
Query: 446 AAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGEN 490
++ I +R + Q ++ +A LV+ GG +VYSTC+I EN
Sbjct: 383 KWKKDIFDIRKMTETQLKLLKKAASLVKVGGAVVYSTCSIEQEEN 427
>gi|14520839|ref|NP_126314.1| proliferating-cell nucleolar antigen P120, [Pyrococcus abyssi GE5]
gi|74581685|sp|Q9V106.1|TRCM_PYRAB RecName: Full=tRNA (cytosine(49)-C(5))-methyltransferase
gi|5458055|emb|CAB49545.1| Sun/NOL1/NOP2 nucleolar protein [Pyrococcus abyssi GE5]
gi|380741383|tpe|CCE70017.1| TPA: proliferating-cell nucleolar antigen P120, putative
[Pyrococcus abyssi GE5]
Length = 311
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 51/73 (69%), Gaps = 2/73 (2%)
Query: 424 NSFDRVLLDAPCSALGL--RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYS 481
N+FDRVLLDAPCS++G+ + FA +I + H + Q+R+ A + ++PGG++VYS
Sbjct: 178 NTFDRVLLDAPCSSVGMIRKNFKFARTWSIGKVYYHSRLQKRLILAAYKSLKPGGVLVYS 237
Query: 482 TCTINPGENEALC 494
TCT++P ENE +
Sbjct: 238 TCTVDPLENEEVV 250
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNK 298
G I Q S++ LDP+ E ILDM AAPG KTT +A + +EG ++A D ++
Sbjct: 90 GLIIPQEASSMIPPVVLDPKPSEVILDMAAAPGSKTTQMAQYMENEGCIIANDAKRDR 147
>gi|393201779|ref|YP_006463621.1| tRNA and rRNA cytosine-C5-methylase [Solibacillus silvestris
StLB046]
gi|406664656|ref|ZP_11072431.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
isronensis B3W22]
gi|327441110|dbj|BAK17475.1| tRNA and rRNA cytosine-C5-methylase [Solibacillus silvestris
StLB046]
gi|405387504|gb|EKB46928.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
isronensis B3W22]
Length = 453
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 55/84 (65%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G I +Q+ S++ A L+PQ G ++LDMCAAPGGKTT +A ++++EG ++A D K+
Sbjct: 236 GLITIQDESSMLPAKVLNPQPGMKVLDMCAAPGGKTTHLAEVMKNEGSILATDLHPKKLD 295
Query: 301 DIQKLAAEMGLKCITTYKLDALKA 324
I++ A +GL I T LD KA
Sbjct: 296 LIEENVARLGLNIIETAPLDGRKA 319
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 49/87 (56%), Gaps = 11/87 (12%)
Query: 411 LGGRAENSKGF-SPNSFDRVLLDAPCSALGLRPR-----LFAAEETIQSLRNHGKYQRRM 464
L GR + GF +D +L+DAPCS LG+ R EE ++SL+ Q +
Sbjct: 314 LDGR--KAAGFLQKEGYDAILVDAPCSGLGVMRRKPDIKYTKREEDLESLQT---IQLSI 368
Query: 465 FDQAVQLVRPGGIIVYSTCTINPGENE 491
+ AVQL++ G +VYSTCT++ ENE
Sbjct: 369 LNNAVQLLKQDGRLVYSTCTVDRSENE 395
>gi|398310669|ref|ZP_10514143.1| 16S rRNA methyltransferase B [Bacillus mojavensis RO-H-1]
Length = 447
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 55/84 (65%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
GE+ +Q+ S++ A ALDP+ GE +LD CAAPGGK+ IA L+ ++G V ++D +KV
Sbjct: 231 GEVSIQDESSMLVARALDPKPGETVLDACAAPGGKSAHIAELMENKGSVTSLDLHKHKVK 290
Query: 301 DIQKLAAEMGLKCITTYKLDALKA 324
I++ + +GL I +DA KA
Sbjct: 291 LIKEASERLGLSIIDAKTMDARKA 314
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F FDR+L+DAPCS G+ +P + + S R + Q + + LV+ GG
Sbjct: 318 FESEQFDRILVDAPCSGFGVIRRKPDMKYTKTPNDSSR-LAEIQLSILREIAPLVKKGGT 376
Query: 478 IVYSTCTINPGENE 491
+VYSTCT++ ENE
Sbjct: 377 LVYSTCTMDRTENE 390
>gi|335429783|ref|ZP_08556681.1| 16S rRNA methyltransferase B [Haloplasma contractile SSD-17B]
gi|334889793|gb|EGM28078.1| 16S rRNA methyltransferase B [Haloplasma contractile SSD-17B]
Length = 439
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 416 ENSKGFSPNSFDRVLLDAPCSALGLRPRL--FAAEETIQSLRNHGKYQRRMFDQAVQLVR 473
E +K F +FDRVL+DAPCS LG+ R ++ + L K Q+ + D AV+L++
Sbjct: 310 ELTKEFKAGTFDRVLIDAPCSGLGVIKRKPEIKYHKSRKDLSQIVKLQKEIIDDAVKLLK 369
Query: 474 PGGIIVYSTCTINPGENEAL 493
PGG +VYSTCTIN ENE +
Sbjct: 370 PGGRLVYSTCTINKRENEDI 389
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 51/82 (62%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G + +Q+ S++ A LDP + + +LD CAAPGGKTT IA L+ + G V A D +K+
Sbjct: 227 DGYLTIQDFSSMLVAKILDPSESDDVLDTCAAPGGKTTHIAELMSNSGSVSACDIYDHKI 286
Query: 300 MDIQKLAAEMGLKCITTYKLDA 321
I + +GLK I TYK DA
Sbjct: 287 KLIDEHVDRLGLKQIKTYKQDA 308
>gi|159478403|ref|XP_001697292.1| hypothetical protein CHLREDRAFT_176590 [Chlamydomonas reinhardtii]
gi|158274450|gb|EDP00232.1| predicted protein [Chlamydomonas reinhardtii]
Length = 237
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 406 GRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMF 465
G+ + + G E + VLLD PCSALGLRPRL + Q LR YQR +
Sbjct: 101 GQEEAVAGGQEKAVAADEGPEAAVLLDPPCSALGLRPRLMHSWSLAQ-LRALAAYQRSLL 159
Query: 466 DQAVQLVRPGGIIVYSTCTINPGENEA 492
AV + PGG ++Y TCTI+P ENEA
Sbjct: 160 VTAVAALAPGGTLLYCTCTISPQENEA 186
>gi|406981882|gb|EKE03270.1| hypothetical protein ACD_20C00225G0014 [uncultured bacterium]
Length = 445
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 61/105 (58%), Gaps = 3/105 (2%)
Query: 219 EGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTA 278
E + V HN + +P F EG +Q+ S + + LDPQ+ ++LD+CAAPGGKTT
Sbjct: 207 ECMIVHHHNSVKSIPGFE---EGFWTVQSESSSLVSIVLDPQENGKVLDLCAAPGGKTTH 263
Query: 279 IASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323
IA+L+ D GE+ AVD + ++ +Q +G+K + DA K
Sbjct: 264 IAALMNDTGEITAVDINPKRLEKVQNNCLRLGVKSVKIKAADATK 308
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 51/81 (62%), Gaps = 2/81 (2%)
Query: 415 AENSKGFSPNSFDRVLLDAPCSALGLRPRLFAA--EETIQSLRNHGKYQRRMFDQAVQLV 472
A+ +K S +DR+L+DAPCS G+ + A +++ + ++N Q + + A +LV
Sbjct: 304 ADATKYQSDKKYDRILIDAPCSNTGVLIKRIDARWKKSPEDIQNLAILQLEILNNAAKLV 363
Query: 473 RPGGIIVYSTCTINPGENEAL 493
+ GGIIVYSTC+I P EN+ +
Sbjct: 364 KSGGIIVYSTCSIEPEENQQV 384
>gi|87303174|ref|ZP_01085972.1| Sun protein (Fmu protein) [Synechococcus sp. WH 5701]
gi|87282341|gb|EAQ74301.1| Sun protein (Fmu protein) [Synechococcus sp. WH 5701]
Length = 447
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Query: 236 YDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRS 295
YD EG +Q+ + + A LDPQ GER+LD CAAPGGK+T +A L+ D G VVAVDRS
Sbjct: 246 YD--EGHWSVQDRTAQMIAPLLDPQPGERLLDACAAPGGKSTHLAELIGDAGTVVAVDRS 303
Query: 296 HNKVMDIQKLAAEMGLKCITTYKLDA 321
++ ++ A +GL I DA
Sbjct: 304 EGRLRRLRDNARRLGLNAIEPLTADA 329
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 53/103 (51%), Gaps = 4/103 (3%)
Query: 395 RKNMRRMRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETI--Q 452
R N RR+ G + L A + FDR+LLDAPCS LG R A I
Sbjct: 311 RDNARRL--GLNAIEPLTADAAITGAIGGPPFDRILLDAPCSGLGTLARHPDARWRITPA 368
Query: 453 SLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEALCA 495
S+ + QR + + + L+ P G +VY+TCT++P EN AL A
Sbjct: 369 SISDLVALQRSLLEAMLPLLVPAGRLVYATCTVHPSENSALIA 411
>gi|443652432|ref|ZP_21130849.1| ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa DIANCHI905]
gi|159030883|emb|CAO88564.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|443334299|gb|ELS48818.1| ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa DIANCHI905]
Length = 446
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 60/118 (50%), Gaps = 10/118 (8%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G LQ++ + + H LDPQ GE I+D CAAPGGKTT IA L+ D G ++A D++ +++
Sbjct: 234 GNYTLQDISAQLVTHLLDPQPGETIIDACAAPGGKTTHIAELMGDRGRILACDQTPSRLR 293
Query: 301 DIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHK 358
++ + LK I + D S D P C D I + S LHK
Sbjct: 294 QLEANIKRLDLKAIEIHLGD----------SRDRPQWCGIADRVLIDAPCSGLGTLHK 341
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 427 DRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTC 483
DRVL+DAPCS LG RP + +T ++L K Q + A V+P GI+VY+TC
Sbjct: 325 DRVLIDAPCSGLGTLHKRPDI-RWRQTPENLPVLAKRQGELLASAATWVKPKGILVYATC 383
Query: 484 TINPGENE 491
T+NP ENE
Sbjct: 384 TLNPLENE 391
>gi|22297753|ref|NP_681000.1| RNA-binding protein [Thermosynechococcus elongatus BP-1]
gi|22293930|dbj|BAC07762.1| RNA-binding protein [Thermosynechococcus elongatus BP-1]
Length = 442
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 53/84 (63%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G +Q+ + +H LDPQ GE ++D CAAPGGKTT IA L+ D+G V+A DRS +++
Sbjct: 232 GHWSVQDRAAQWVSHLLDPQPGEVVIDACAAPGGKTTHIAELMEDQGRVIACDRSPHRLR 291
Query: 301 DIQKLAAEMGLKCITTYKLDALKA 324
+ + +GLK I + LD+ A
Sbjct: 292 KLAQNRDRLGLKSIEIHILDSAAA 315
Score = 45.4 bits (106), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 28/81 (34%)
Query: 427 DRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAV---------------QL 471
DRVLLDAPCS G +L H + R + + Q
Sbjct: 323 DRVLLDAPCSGTG-------------TLHRHADARWRPLKRRLGELLPLQAQLLATVSQW 369
Query: 472 VRPGGIIVYSTCTINPGENEA 492
V+P G++VY+TC++ P ENEA
Sbjct: 370 VKPYGLLVYATCSLEPAENEA 390
>gi|317056478|ref|YP_004104945.1| sun protein [Ruminococcus albus 7]
gi|315448747|gb|ADU22311.1| sun protein [Ruminococcus albus 7]
Length = 431
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 52/76 (68%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G+ +Q++ S + ALDPQ G+ +LD+C+APGGKT IA ++ +EG+V+A D N+V
Sbjct: 229 QGKFHVQDIASQLCCKALDPQPGDIVLDLCSAPGGKTFTIAEMMNNEGKVLAFDLHPNRV 288
Query: 300 MDIQKLAAEMGLKCIT 315
I+ A +GL C+T
Sbjct: 289 KLIRSGAERLGLTCVT 304
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 54/101 (53%), Gaps = 9/101 (8%)
Query: 398 MRRMRNGPGRN--QCLGGRAENSKGFSPN--SFDRVLLDAPCSALGL---RPRLFAAEET 450
++ +R+G R C+ N+K F+ + D+VL+DAPCS LG+ +P + + +
Sbjct: 288 VKLIRSGAERLGLTCVTADVNNAKIFNSDIPVADKVLVDAPCSGLGVIRRKPEIKYKDPS 347
Query: 451 IQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENE 491
+ Q + D A + V+ G +VYSTCT++ EN+
Sbjct: 348 --EFDRLPEIQGDILDTASKYVKANGTLVYSTCTVSKAEND 386
>gi|398304097|ref|ZP_10507683.1| 16S rRNA methyltransferase B [Bacillus vallismortis DV1-F-3]
Length = 447
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 56/86 (65%)
Query: 239 LEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNK 298
L GE+ +Q+ S++ A ALDP+ GE +LD CAAPGGK+ I L+ ++G + ++D +K
Sbjct: 229 LNGEVSIQDESSMLVARALDPKPGETVLDACAAPGGKSAHIGELMENKGSISSLDLHKHK 288
Query: 299 VMDIQKLAAEMGLKCITTYKLDALKA 324
V I++ A +GL I ++DA KA
Sbjct: 289 VKLIKEAADRLGLTIIDAQEMDARKA 314
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F FDRVL+DAPCS G+ +P + ++ S R + Q + + LV+ GG
Sbjct: 318 FENEQFDRVLVDAPCSGFGVIRRKPDMKYTKKPDDSAR-LAEIQLSILREIAPLVKKGGT 376
Query: 478 IVYSTCTINPGENE 491
+VYSTCT++ ENE
Sbjct: 377 LVYSTCTMDRTENE 390
>gi|126649674|ref|ZP_01721910.1| 16S rRNA m(5)C 967 methyltransferase [Bacillus sp. B14905]
gi|126593393|gb|EAZ87338.1| 16S rRNA m(5)C 967 methyltransferase [Bacillus sp. B14905]
Length = 453
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 54/85 (63%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
EG I +Q+ S++ A+ L+P G R+LDMCAAPGGKTT +A ++++EG ++A D +K+
Sbjct: 235 EGHITIQDESSMIPANVLNPSPGMRVLDMCAAPGGKTTHLAEIMKNEGSILATDLHPHKL 294
Query: 300 MDIQKLAAEMGLKCITTYKLDALKA 324
I +GL I T +D KA
Sbjct: 295 DLIDHNTERLGLDIIETAPIDGRKA 319
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 425 SFDRVLLDAPCSALGLRPRLFAAEETI--QSLRNHGKYQRRMFDQAVQLVRPGGIIVYST 482
S+D VL+DAPCS LG+ R + T + L N Q + D A ++++ G +VYST
Sbjct: 327 SYDAVLVDAPCSGLGVMRRKPDIKYTKREEDLENLQTIQLALLDAATKVLKIEGKLVYST 386
Query: 483 CTINPGENE 491
CT++ ENE
Sbjct: 387 CTVDKQENE 395
>gi|171184492|ref|YP_001793411.1| PUA domain-containing protein [Pyrobaculum neutrophilum V24Sta]
gi|170933704|gb|ACB38965.1| PUA domain containing protein [Pyrobaculum neutrophilum V24Sta]
Length = 375
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 74/294 (25%), Positives = 124/294 (42%), Gaps = 61/294 (20%)
Query: 18 QVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEAD 77
++ ++F++ + ++TRP IRVNT KTT +++I
Sbjct: 11 ELYKHFLQFLSDSEIDALFLSITRPPRRYYIRVNTAKTTREELI---------------- 54
Query: 78 VASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVL 137
GRL+ ++ + +++ GP I K V+V +K AE+V+
Sbjct: 55 ------GRLRARGVTAYPDERFDDALWMPVEGPFKIPTAR------KRVVVDKKAAESVM 102
Query: 138 RGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFER 197
GA +Y PGV+ + HV +G+ V+V + G+ + S +D R
Sbjct: 103 MGADLYAPGVVK-TDHVRRGE--EVNVVSDN---------GVVVAFGVAVSDSDEVMKTR 150
Query: 198 SGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHAL 257
GLYI T++ +I LP + D G + Q+LP+I H
Sbjct: 151 RGLYIRVETSLYKTP---------------KIRDLPEYRD---GLFYSQSLPAIAVGHVA 192
Query: 258 DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL 311
+D+ AAPGGK T +A + + VVA DRS K+ +++ +GL
Sbjct: 193 KRAGAATAVDLNAAPGGKATHLAQM---DMRVVAFDRSWPKIERLKREVERLGL 243
Score = 42.7 bits (99), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query: 427 DRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTIN 486
D L+D PC+ +G+RP+++ T++ + +YQ + A+++ ++YSTCT+
Sbjct: 267 DLALVDPPCTDIGVRPKIY-HRVTMEMAKTLSRYQLQFLKTALKI---ASNVIYSTCTLT 322
Query: 487 PGENE 491
ENE
Sbjct: 323 YIENE 327
>gi|123965723|ref|YP_001010804.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9515]
gi|123200089|gb|ABM71697.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9515]
Length = 437
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 67/109 (61%), Gaps = 4/109 (3%)
Query: 214 IFRASEGIAVDMHNR-IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAP 272
I + + G+A++ + R I LP + D G +Q+ S A L+P+KGE+ILD C+AP
Sbjct: 211 INQLNNGVALNSNPRSIKNLPGYKD---GLWVVQDRSSQWVAPLLNPKKGEKILDACSAP 267
Query: 273 GGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
G KTT +A+L+ D+ E++AVDRS ++ +Q + +K + T + DA
Sbjct: 268 GSKTTHLAALVNDDAEILAVDRSEKRLKILQSNLERLNIKSVKTLEADA 316
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 8/73 (10%)
Query: 426 FDRVLLDAPCSALGL-----RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
FD++L+DAPCS +G R +++ I L Q + D L++ G +VY
Sbjct: 330 FDKILIDAPCSGIGTFARNPDTRWSLSKDKINQL---IILQEGLLDSIFPLLKKNGTLVY 386
Query: 481 STCTINPGENEAL 493
STCTI P EN L
Sbjct: 387 STCTICPDENNLL 399
>gi|423448370|ref|ZP_17425249.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG5O-1]
gi|401128964|gb|EJQ36647.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG5O-1]
Length = 444
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 57/85 (67%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G + +Q+ S++ A ALDP +GE +LD CAAPGGKTT IA L+ G+V+++D +KV
Sbjct: 227 KGFLSIQDESSMLVARALDPNEGETVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKV 286
Query: 300 MDIQKLAAEMGLKCITTYKLDALKA 324
I++ A +GL+ I T LDA K
Sbjct: 287 RLIKQQAERLGLENIETKALDARKV 311
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F+ +FD++L+DAPCS G+ +P + ++ S R Q + ++ L++ GG
Sbjct: 315 FANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSER-LSTIQLAILEKIAPLLKQGGR 373
Query: 478 IVYSTCTINPGENE 491
+VYSTCTI ENE
Sbjct: 374 LVYSTCTIEKIENE 387
>gi|119487592|ref|ZP_01621202.1| Fmu, rRNA SAM-dependent methyltransferase [Lyngbya sp. PCC 8106]
gi|119455761|gb|EAW36897.1| Fmu, rRNA SAM-dependent methyltransferase [Lyngbya sp. PCC 8106]
Length = 450
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 57/93 (61%), Gaps = 4/93 (4%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G +Q+ + +H LDPQ GE I+D CAAPGGKTT IA L++D G ++A DR+ +++
Sbjct: 239 QGWWSIQDSSAQWVSHILDPQPGEIIIDACAAPGGKTTHIAELMQDTGTILAFDRAKSRL 298
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRRKNESN 332
+Q+ + LK ITT L +R +E N
Sbjct: 299 KKVQQNQERLQLKSITT----QLADIRELSEYN 327
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
Query: 427 DRVLLDAPCSALGLRPRLFAAE--ETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCT 484
DRVLLDAPCS LG R A T Q+++ + Q + ++ V+PGG +VY+TCT
Sbjct: 331 DRVLLDAPCSGLGTLHRRADARWRHTQQNVQELSELQTELLEKTATWVKPGGYLVYATCT 390
Query: 485 INPGENEAL 493
I+P ENE +
Sbjct: 391 IHPLENETI 399
>gi|223478128|ref|YP_002582529.1| tRNA/RNA cytosine-C5-methylase [Thermococcus sp. AM4]
gi|214033354|gb|EEB74181.1| tRNA/RNA cytosine-C5-methylase [Thermococcus sp. AM4]
Length = 451
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 53/81 (65%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
EG+ +Q+L S AH L P+ GER+LD+ AAPG KT A+L+ + GE+VAVD S++++
Sbjct: 240 EGKFVIQDLASAYVAHVLAPEPGERVLDLAAAPGSKTFHAAALMENRGEIVAVDYSYDRL 299
Query: 300 MDIQKLAAEMGLKCITTYKLD 320
M +++ +G+K + D
Sbjct: 300 MRMKEKMKLLGIKNVKLVHAD 320
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 426 FDRVLLDAPCSALGLRPRLFAAEETI--QSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTC 483
FDR++LDAPCS+ G + + ++ QR M A + +R GG + YSTC
Sbjct: 330 FDRIILDAPCSSSGTYRQFPEVKWRFDENKIKRIISVQRNMLRNAYENLREGGEMTYSTC 389
Query: 484 TINPGENE 491
+I E+E
Sbjct: 390 SIRVDEDE 397
>gi|87125560|ref|ZP_01081405.1| Fmu, rRNA SAM-dependent methyltransferase [Synechococcus sp.
RS9917]
gi|86166860|gb|EAQ68122.1| Fmu, rRNA SAM-dependent methyltransferase [Synechococcus sp.
RS9917]
Length = 454
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 59/102 (57%), Gaps = 3/102 (2%)
Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
+ Q P + EG +Q+ + A L+P+ GER+LD CAAPGGK+T +A L+ D GE
Sbjct: 244 LRQWPGYA---EGHWCVQDRAAQWVAPLLEPRPGERLLDACAAPGGKSTHLAELIGDAGE 300
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNE 330
V AVDRS ++ + AA +G C+ DA + ++ + +
Sbjct: 301 VWAVDRSAGRLQRLAANAARLGCGCVNALAADACELLQERPQ 342
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 424 NSFDRVLLDAPCSALGLRPRLFAAEE--TIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYS 481
+F RVLLDAPCS LG R A T ++ Q R+ + + L+ PGG +VY+
Sbjct: 345 GAFQRVLLDAPCSGLGTLARHADARWRVTPATITELLPLQARLLEAMLALLAPGGRLVYA 404
Query: 482 TCTINPGENE 491
TCTI+P EN+
Sbjct: 405 TCTIHPAENQ 414
>gi|423378296|ref|ZP_17355580.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG1O-2]
gi|423441404|ref|ZP_17418310.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG4X2-1]
gi|423464478|ref|ZP_17441246.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG6O-1]
gi|423533820|ref|ZP_17510238.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
HuB2-9]
gi|423540911|ref|ZP_17517302.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
HuB4-10]
gi|423547149|ref|ZP_17523507.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
HuB5-5]
gi|423623059|ref|ZP_17598837.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD148]
gi|401172099|gb|EJQ79320.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
HuB4-10]
gi|401178870|gb|EJQ86043.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
HuB5-5]
gi|401259832|gb|EJR66006.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD148]
gi|401636562|gb|EJS54316.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG1O-2]
gi|402418065|gb|EJV50365.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG4X2-1]
gi|402420745|gb|EJV53016.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG6O-1]
gi|402464039|gb|EJV95739.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
HuB2-9]
Length = 444
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 57/85 (67%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G + +Q+ S++ A ALDP +GE +LD CAAPGGKTT IA L+ G+V+++D +KV
Sbjct: 227 KGFLSIQDESSMLVARALDPNEGETVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKV 286
Query: 300 MDIQKLAAEMGLKCITTYKLDALKA 324
I++ A +GL+ I T LDA K
Sbjct: 287 RLIKQQAERLGLENIETKALDARKV 311
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F+ +FD++L+DAPCS G+ +P + ++ S R Q + ++ L++ GG
Sbjct: 315 FANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSER-LSTIQLAILEKIAPLLKQGGR 373
Query: 478 IVYSTCTINPGENE 491
+VYSTCTI ENE
Sbjct: 374 LVYSTCTIEKIENE 387
>gi|427708448|ref|YP_007050825.1| sun protein [Nostoc sp. PCC 7107]
gi|427360953|gb|AFY43675.1| sun protein [Nostoc sp. PCC 7107]
Length = 449
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 56/86 (65%), Gaps = 3/86 (3%)
Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
I LP F EG +Q+ + + +H LDPQ GE ++D CAAPGGKTT IA L++D+G+
Sbjct: 225 IQNLPGF---TEGWWVVQDASAQLVSHLLDPQAGEVVIDTCAAPGGKTTHIAELMQDQGK 281
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKCI 314
V A DR+ +++ +Q+ A + L+ I
Sbjct: 282 VWAGDRTASRLRKLQENARRLNLQSI 307
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 60/113 (53%), Gaps = 5/113 (4%)
Query: 385 ERTYVSKADTRKNMRRMRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGLRPRL 444
+RT ++N RR+ N C G + N F N DRVLLDAPCS LG R
Sbjct: 286 DRTASRLRKLQENARRL-NLQSIEIC-AGDSRNLPQFY-NIGDRVLLDAPCSGLGTLHRH 342
Query: 445 FAAE--ETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEALCA 495
A +T +S++ Q+++ V+ GG++VY+TCT++ ENEA+ +
Sbjct: 343 ADARWRQTPESIQELSLLQKQLLSHTSNFVKNGGVLVYATCTLHLAENEAVIS 395
>gi|229098334|ref|ZP_04229281.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
Rock3-29]
gi|229117351|ref|ZP_04246729.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
Rock1-3]
gi|228666251|gb|EEL21715.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
Rock1-3]
gi|228685232|gb|EEL39163.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
Rock3-29]
Length = 354
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 57/84 (67%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G + +Q+ S++ A ALDP +GE +LD CAAPGGKTT IA L+ G+V+++D +KV
Sbjct: 137 KGFLSIQDESSMLVARALDPNEGETVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKV 196
Query: 300 MDIQKLAAEMGLKCITTYKLDALK 323
I++ A +GL+ I T LDA K
Sbjct: 197 RLIKQQAERLGLENIETKALDARK 220
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F+ +FD++L+DAPCS G+ +P + ++ S R Q + ++ L++ GG
Sbjct: 225 FANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSER-LSTIQLAILEKIAPLLKQGGR 283
Query: 478 IVYSTCTINPGENE 491
+VYSTCTI ENE
Sbjct: 284 LVYSTCTIEKIENE 297
>gi|340355046|ref|ZP_08677739.1| RNA methyltransferase Sun [Sporosarcina newyorkensis 2681]
gi|339622727|gb|EGQ27241.1| RNA methyltransferase Sun [Sporosarcina newyorkensis 2681]
Length = 446
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
Query: 412 GGRAENSKGFSPNSFDRVLLDAPCSALGL--RPRLFAAEETIQSLRNHGKYQRRMFDQAV 469
G E + P SFDRVL+DAPCS LG+ R ++T+Q + N Q+ + A
Sbjct: 314 GDSRELLSTYEPQSFDRVLVDAPCSGLGVIRRKPEIKYKKTVQDIENLSVIQKDLLQVAA 373
Query: 470 QLVRPGGIIVYSTCTINPGENEALC 494
QLV+ GG +VYSTCTI+ EN+A+
Sbjct: 374 QLVKKGGRLVYSTCTIDKTENQAIV 398
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 51/77 (66%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G + +Q+ S++ A AL + G ++LDMCAAPGGKTT IA ++DEGEV A D +K+
Sbjct: 235 QGLLTVQDESSMLPALALQVEPGMKVLDMCAAPGGKTTHIAERMKDEGEVQAHDLHPHKL 294
Query: 300 MDIQKLAAEMGLKCITT 316
I++ A +GL I T
Sbjct: 295 RLIEQNAERLGLTSIHT 311
>gi|390960865|ref|YP_006424699.1| hypothetical protein containing sun-domain [Thermococcus sp. CL1]
gi|390519173|gb|AFL94905.1| hypothetical protein containing sun-domain [Thermococcus sp. CL1]
Length = 451
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 53/81 (65%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
EG+ +Q+L S AH L P+ GER+LD+ AAPG KT A+L+ + GE+VAVD S++++
Sbjct: 240 EGKFVIQDLASAYVAHVLAPEPGERVLDLAAAPGSKTFHAAALMENRGEIVAVDYSYDRL 299
Query: 300 MDIQKLAAEMGLKCITTYKLD 320
M +++ +G+K + D
Sbjct: 300 MRMREKMKLLGIKNVKLVHAD 320
Score = 43.1 bits (100), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 12/73 (16%)
Query: 426 FDRVLLDAPCSALG-------LRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGII 478
FD+++LDAPCS+ G ++ R EE I+ + + QR M A + +R GG +
Sbjct: 330 FDKIILDAPCSSSGTYRQFPEVKWRF--NEEKIKRIIS---VQRNMLRNAYENLRDGGEM 384
Query: 479 VYSTCTINPGENE 491
YSTC++ E+E
Sbjct: 385 TYSTCSVRIDEDE 397
>gi|341582142|ref|YP_004762634.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus sp. 4557]
gi|340809800|gb|AEK72957.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus sp. 4557]
Length = 451
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 54/81 (66%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
EG+ +Q+L S AH L P+ GER+LD+ AAPG KT A+L+ ++GE++AVD S++++
Sbjct: 240 EGKFVIQDLASAYVAHVLAPEPGERVLDLAAAPGSKTFHAAALMENKGEIIAVDYSYDRL 299
Query: 300 MDIQKLAAEMGLKCITTYKLD 320
M +++ +G+K + D
Sbjct: 300 MRMKEKMKLLGIKNVKLVHAD 320
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 12/73 (16%)
Query: 426 FDRVLLDAPCSALG-------LRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGII 478
FD+++LDAPCS+ G ++ R E I+ + N QR M A + +R GG +
Sbjct: 330 FDKIILDAPCSSSGTYRQFPEVKWRF--DENKIKRIVN---VQRNMLRNAYENLRKGGEM 384
Query: 479 VYSTCTINPGENE 491
YSTC+I E+E
Sbjct: 385 TYSTCSIRIDEDE 397
>gi|15921679|ref|NP_377348.1| Sun family protein [Sulfolobus tokodaii str. 7]
gi|15622466|dbj|BAB66457.1| putative RNA methyltransferase [Sulfolobus tokodaii str. 7]
Length = 349
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 68/288 (23%), Positives = 123/288 (42%), Gaps = 80/288 (27%)
Query: 37 KALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTISESQI 96
+++ P+ +RVNTLK ++++ +L + ++ EA
Sbjct: 28 RSILVPNSRLYVRVNTLKINVEEILAELNFLERDEDFEEA-------------------- 67
Query: 97 PGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEK 156
+FVK GP+ I+ + +VIV ++ AE+V+ GA VY PG+ + +
Sbjct: 68 ------LFVKLKGPNKIE------EHETKVIVDKRTAESVIMGADVYRPGIKKVLGNGKY 115
Query: 157 GDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFR 216
+VV+ +G+ +G+G ++++ +
Sbjct: 116 VNVVS-----------------------------------ENGVIVGEG-ELVNKGNL-- 137
Query: 217 ASEGIAVDMHNRIFQLPSFYD---VLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPG 273
V + N ++ P F D V +G + LQ S+ AH LDP+ E+I+DM A PG
Sbjct: 138 -----VVRVLNPLYSAPKFADLEYVKDGSLILQGKASMYVAHLLDPKPNEKIIDMTAYPG 192
Query: 274 GKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
GK T I L +V+ D + KV ++++ +M + I Y D+
Sbjct: 193 GKLTHIYQ-LEPRSKVIGFDHTKKKVDELREKVKKMKMN-IEVYLADS 238
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 419 KGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGII 478
+GF D+V++D PCSALG+RP+++ +T + + N YQR+ + A ++++ GI+
Sbjct: 243 EGFGLRDVDKVIIDPPCSALGIRPKVYD-RKTKEDIINFHNYQRQFINSAYKILKKNGIL 301
Query: 479 VYSTCTINPGENEALC 494
VYSTCT+ ENE +
Sbjct: 302 VYSTCTVTTWENEKVI 317
>gi|14521110|ref|NP_126585.1| sun protein (fmu protein) [Pyrococcus abyssi GE5]
gi|5458327|emb|CAB49816.1| Sun/NOL1/NOP nucleolar protein [Pyrococcus abyssi GE5]
gi|380741676|tpe|CCE70310.1| TPA: sun protein (fmu protein) [Pyrococcus abyssi GE5]
Length = 450
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 57/89 (64%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G +Q+L S AH L+P+ GER+LD+ AAPG KT A+L+ ++GE+VAVD S++++
Sbjct: 240 KGYFVIQDLASAYVAHVLNPEPGERVLDLAAAPGSKTFHAAALMENKGEIVAVDYSYDRL 299
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRRK 328
M +++ +G+K + D + R+
Sbjct: 300 MKMKERMKRLGVKNVKLVHADGQSFIDRE 328
Score = 42.7 bits (99), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 12/73 (16%)
Query: 426 FDRVLLDAPCSALG-------LRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGII 478
F++++LDAPCS+ G ++ R EE I+ + + QR M A + +R GG +
Sbjct: 330 FEKIILDAPCSSSGTYRQFPEVKWRF--DEEKIKRVIS---VQRNMLLNAYRNLRSGGEM 384
Query: 479 VYSTCTINPGENE 491
YSTC+I ENE
Sbjct: 385 TYSTCSIRIDENE 397
>gi|385264700|ref|ZP_10042787.1| RsmB [Bacillus sp. 5B6]
gi|385149196|gb|EIF13133.1| RsmB [Bacillus sp. 5B6]
Length = 447
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 55/84 (65%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G + +Q+ S++ A ALDP+ GE +LD CAAPGGK+ IA L+++EG + ++D +KV
Sbjct: 231 GRVSIQDESSMLVARALDPKPGETVLDACAAPGGKSAHIAELMQNEGSLTSLDLHRHKVK 290
Query: 301 DIQKLAAEMGLKCITTYKLDALKA 324
I++ A +GL I +DA KA
Sbjct: 291 LIKEGAERLGLTIIDAQTMDARKA 314
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 419 KGFSPNSFDRVLLDAPCSALGL--RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGG 476
+ F FDR+L+DAPCS G+ R +T + R + Q + + LV+ GG
Sbjct: 316 EAFGAERFDRILVDAPCSGFGVIRRKPDMKYTKTPEDSRRLSEIQLGILREIAPLVKKGG 375
Query: 477 IIVYSTCTINPGENE 491
+VYSTCT++ ENE
Sbjct: 376 TLVYSTCTMDRTENE 390
>gi|379722975|ref|YP_005315106.1| ribosomal RNA small subunit methyltransferase B [Paenibacillus
mucilaginosus 3016]
gi|378571647|gb|AFC31957.1| ribosomal RNA small subunit methyltransferase B [Paenibacillus
mucilaginosus 3016]
Length = 541
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 53/85 (62%)
Query: 237 DVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296
D EG +Q+ S++ A +DPQ GER+LD CAAPGGKTT +A ++ GE+VA D
Sbjct: 320 DYAEGLYSIQDESSMLVAEWVDPQPGERVLDCCAAPGGKTTHLAEKMQGRGEIVACDVHE 379
Query: 297 NKVMDIQKLAAEMGLKCITTYKLDA 321
+K I++ A +G + ITT DA
Sbjct: 380 HKHGLIREQAVRLGHESITTLTADA 404
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 421 FSPNSFDRVLLDAPCSALGL--RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGII 478
++P SFDR+LLDAPCS LG+ R +T L Q+ + + L++PGG++
Sbjct: 411 YAPESFDRILLDAPCSGLGVIRRKPDMKWTKTEAELGEICSIQQELLEAVHGLLKPGGVL 470
Query: 479 VYSTCTINPGEN 490
VYSTCT+ P EN
Sbjct: 471 VYSTCTVEPAEN 482
>gi|315646179|ref|ZP_07899299.1| sun protein [Paenibacillus vortex V453]
gi|315278378|gb|EFU41694.1| sun protein [Paenibacillus vortex V453]
Length = 460
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 50/80 (62%), Gaps = 8/80 (10%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLF--AAEETIQSLRNHGKYQRRMFDQAVQLVRPG 475
F P SFDR+LLDAPCS LG+ +P L +EE I + Q R+ + L+RPG
Sbjct: 329 FEPASFDRILLDAPCSGLGVIRRKPDLKWGKSEEDIAEI---AALQLRLLESVSSLLRPG 385
Query: 476 GIIVYSTCTINPGENEALCA 495
GI+VYSTCT+ P ENE + +
Sbjct: 386 GILVYSTCTMEPLENEGVVS 405
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 52/88 (59%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G I +Q+ S++ A A+ P+ G R+LD CAAPGGK+ + L++DEG ++A D +K
Sbjct: 241 DGLISIQDESSMLVAEAIQPEPGMRVLDCCAAPGGKSAHMGELMKDEGSIIANDIHTHKG 300
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRR 327
I A+ +GL I T DAL R
Sbjct: 301 KLISDQASRLGLDSIMTVTGDALDLADR 328
>gi|315924509|ref|ZP_07920730.1| RNA methyltransferase Sun [Pseudoramibacter alactolyticus ATCC
23263]
gi|315622213|gb|EFV02173.1| RNA methyltransferase Sun [Pseudoramibacter alactolyticus ATCC
23263]
Length = 440
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 55/84 (65%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G + +Q+ +++ A LDP+ GERILDMCAAPGGKTT +A L+ D GE++A D +++
Sbjct: 241 DGWLTIQDQGAMLIAELLDPRPGERILDMCAAPGGKTTHLAQLMSDAGEIIARDIYPSRL 300
Query: 300 MDIQKLAAEMGLKCITTYKLDALK 323
I+ A +G+ I T D ++
Sbjct: 301 QLIEDAAKRLGISNIKTELWDGIQ 324
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 8/71 (11%)
Query: 425 SFDRVLLDAPCSALGL---RP--RLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIV 479
+FD++LLDAPCS G+ +P R +E +++R + QR + + + L+R G +V
Sbjct: 331 AFDKILLDAPCSGYGVIRRKPEIRYRGTKEDRRAIR---QTQRTLLNNGLDLLRSDGKLV 387
Query: 480 YSTCTINPGEN 490
Y+TCTI+P EN
Sbjct: 388 YATCTIDPEEN 398
>gi|150390542|ref|YP_001320591.1| sun protein [Alkaliphilus metalliredigens QYMF]
gi|149950404|gb|ABR48932.1| sun protein [Alkaliphilus metalliredigens QYMF]
Length = 444
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 55/83 (66%)
Query: 239 LEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNK 298
L+G+I++Q+ S++ A +DP G I+D+C+APGGK T +A L+ ++GEVVA D +K
Sbjct: 229 LKGQIYIQDFSSMLVARIMDPHPGALIMDVCSAPGGKATHLAQLMGNQGEVVARDVHEHK 288
Query: 299 VMDIQKLAAEMGLKCITTYKLDA 321
+ I++ +G+K I T DA
Sbjct: 289 LKLIKENVKRLGVKIIKTEVFDA 311
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 11/82 (13%)
Query: 417 NSKGFSPNSFDR---VLLDAPCSALGL---RPRL--FAAEETIQSLRNHGKYQRRMFDQA 468
++K P R VL+DAPCS LG+ +P + +E I+ L+ + Q + +
Sbjct: 310 DAKELDPTMLQRADGVLIDAPCSGLGIIRRKPEIKYRKKQEDIKELQ---QLQIEILNHG 366
Query: 469 VQLVRPGGIIVYSTCTINPGEN 490
+ V+PGG +VYSTCTI+P EN
Sbjct: 367 AEYVKPGGTLVYSTCTIDPREN 388
>gi|55377492|ref|YP_135342.1| tRNA and rRNA cytosine-C5-methylase [Haloarcula marismortui ATCC
43049]
gi|55230217|gb|AAV45636.1| tRNA and rRNA cytosine-C5-methylases [Haloarcula marismortui ATCC
43049]
Length = 318
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 64/131 (48%), Gaps = 8/131 (6%)
Query: 198 SGLYIGQGTAMMSRAGIFRASEGIA---VDMHNRIFQLP-----SFYDVLEGEIFLQNLP 249
S + + A + R A IA VD H+ +F LP + + G I Q
Sbjct: 42 SAIRVNTIKATVERVRTALADADIAYDPVDWHDGLFVLPEDSPGANWPYFHGWIHGQEEV 101
Query: 250 SIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEM 309
S++ A LDPQ GER+ D CAAPG KTT +A+L+ D GEVVA D + ++ ++ +
Sbjct: 102 SVIPATVLDPQPGERVWDACAAPGSKTTQLAALMEDTGEVVATDNNLGRISALRTNTERL 161
Query: 310 GLKCITTYKLD 320
G + D
Sbjct: 162 GATTVAVTHED 172
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 413 GRAENSKGFSPNSFDRVLLDAPCSALG-LRPRLFAAEE-TIQSLRNHGKYQRRMFDQAVQ 470
GR + K F +DR L+D PCS G +R E+ ++ + Q+ + +AV+
Sbjct: 173 GRNHSLKPFDGEGYDRALVDVPCSCEGTIRKNPDTLEDWSLSHVEGISGVQKGILKRAVE 232
Query: 471 LVRPGGIIVYSTCTINPGENEAL 493
+ PGG +VYSTCT P ENEA+
Sbjct: 233 VTEPGGTVVYSTCTFAPEENEAV 255
>gi|154685990|ref|YP_001421151.1| RsmB [Bacillus amyloliquefaciens FZB42]
gi|154351841|gb|ABS73920.1| RsmB [Bacillus amyloliquefaciens FZB42]
Length = 447
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 54/84 (64%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G + +Q+ S++ A ALDP+ GE +LD CAAPGGK+ IA L+ +EG + ++D +KV
Sbjct: 231 GRVSIQDESSMLVARALDPKPGETVLDACAAPGGKSAHIAELMENEGSLTSLDLHRHKVK 290
Query: 301 DIQKLAAEMGLKCITTYKLDALKA 324
I++ A +GL I +DA KA
Sbjct: 291 LIKEGAERLGLTIIDAQTMDARKA 314
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 419 KGFSPNSFDRVLLDAPCSALGL--RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGG 476
+ F FDRVL+DAPCS G+ R +T + R + Q + + LV+ GG
Sbjct: 316 EAFGAERFDRVLVDAPCSGFGVIRRKPDMKYTKTPEDSRRLSEIQLGILREIAPLVKKGG 375
Query: 477 IIVYSTCTINPGENE 491
+VYSTCT++ ENE
Sbjct: 376 TLVYSTCTMDRTENE 390
>gi|169827064|ref|YP_001697222.1| ribosomal RNA small subunit methyltransferase B [Lysinibacillus
sphaericus C3-41]
gi|168991552|gb|ACA39092.1| Ribosomal RNA small subunit methyltransferase B [Lysinibacillus
sphaericus C3-41]
Length = 453
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 53/85 (62%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
EG I +Q+ S++ A+ L P G R+LDMCAAPGGKTT +A ++++EG ++A D +K+
Sbjct: 235 EGHITIQDESSMIPANVLKPSPGMRVLDMCAAPGGKTTHLAEIMKNEGSILATDLHPHKL 294
Query: 300 MDIQKLAAEMGLKCITTYKLDALKA 324
I +GL I T +D KA
Sbjct: 295 DLIDHNTERLGLDIIETAPIDGRKA 319
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 425 SFDRVLLDAPCSALGLRPRLFAAEETI--QSLRNHGKYQRRMFDQAVQLVRPGGIIVYST 482
S+D +L+DAPCS LG+ R + T + L N Q + D A ++++ G +VYST
Sbjct: 327 SYDAILVDAPCSGLGVMRRKPDIKYTKREEDLENLQTIQLALLDAATKVLKIKGKLVYST 386
Query: 483 CTINPGENE 491
CT++ ENE
Sbjct: 387 CTVDKQENE 395
>gi|296331149|ref|ZP_06873623.1| RNA-binding Sun protein [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305674305|ref|YP_003865977.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Bacillus subtilis
subsp. spizizenii str. W23]
gi|296151793|gb|EFG92668.1| RNA-binding Sun protein [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305412549|gb|ADM37668.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Bacillus subtilis
subsp. spizizenii str. W23]
Length = 447
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 54/84 (64%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
GE+ +Q+ S++ A ALDP+ GE +LD CAAPGGK+ I L+ ++G V ++D +KV
Sbjct: 231 GEVSIQDESSMLVARALDPKPGETVLDACAAPGGKSAHIGELMENKGSVTSLDLHKHKVK 290
Query: 301 DIQKLAAEMGLKCITTYKLDALKA 324
I++ A +GL I +DA KA
Sbjct: 291 LIKEAADRLGLTIIDAKTMDARKA 314
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F FDR+L+DAPCS G+ +P + ++ S R + Q + + LV+ GG
Sbjct: 318 FENGQFDRILVDAPCSGFGVIRRKPDMKYTKKPDDSTR-LAEIQLSILREIAPLVKKGGT 376
Query: 478 IVYSTCTINPGENE 491
+VYSTCT++ ENE
Sbjct: 377 LVYSTCTMDRTENE 390
>gi|402833087|ref|ZP_10881709.1| ribosomal RNA small subunit methyltransferase B [Selenomonas sp.
CM52]
gi|402281454|gb|EJU30089.1| ribosomal RNA small subunit methyltransferase B [Selenomonas sp.
CM52]
Length = 443
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 65/115 (56%), Gaps = 3/115 (2%)
Query: 219 EGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTA 278
EGI H + L S +G +Q+ S++ AH L P+ GE +LD+C+APGGKTT
Sbjct: 214 EGILCLRHGSLDALESLQ---QGLFQVQDESSMLVAHILAPEPGEFVLDVCSAPGGKTTH 270
Query: 279 IASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESND 333
IA+ + D G +VA+D +K+ I + +G+K + LDA +A RR + D
Sbjct: 271 IAASMGDRGRIVALDVHEHKMRRIAENCERLGIKSVEPLLLDAREAGRRFSRQAD 325
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 416 ENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAE--ETIQSLRNHGKYQRRMFDQAVQLVR 473
E + FS + DRVL+DAPCS LG+ R A + L + QR + A + V+
Sbjct: 315 EAGRRFSRQA-DRVLVDAPCSGLGVLRRKPDARWRKRPDDLAALARLQREILSSAAEAVK 373
Query: 474 PGGIIVYSTCTINPGENEAL 493
GG++VYSTCTI ENEA+
Sbjct: 374 SGGVLVYSTCTIEREENEAV 393
>gi|452855521|ref|YP_007497204.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Bacillus
amyloliquefaciens subsp. plantarum UCMB5036]
gi|452079781|emb|CCP21538.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Bacillus
amyloliquefaciens subsp. plantarum UCMB5036]
Length = 446
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 54/84 (64%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G + +Q+ S++ A ALDP+ GE +LD CAAPGGK+ IA L+ +EG + ++D +KV
Sbjct: 230 GRVSIQDESSMLVARALDPKPGETVLDACAAPGGKSAHIAELMENEGSLTSLDLHRHKVK 289
Query: 301 DIQKLAAEMGLKCITTYKLDALKA 324
I++ A +GL I +DA KA
Sbjct: 290 LIKEGAERLGLTIIDAQTMDARKA 313
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 419 KGFSPNSFDRVLLDAPCSALGL--RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGG 476
+ F FDRVL+DAPCS G+ R +T + R + Q + + LV+ GG
Sbjct: 315 EAFGAERFDRVLVDAPCSGFGVIRRKPDMKYTKTPEDSRRLAEIQLGILREIAPLVKKGG 374
Query: 477 IIVYSTCTINPGENE 491
+VYSTCT++ ENE
Sbjct: 375 TLVYSTCTMDRTENE 389
>gi|443632757|ref|ZP_21116936.1| RNA-binding Sun protein [Bacillus subtilis subsp. inaquosorum KCTC
13429]
gi|443347580|gb|ELS61638.1| RNA-binding Sun protein [Bacillus subtilis subsp. inaquosorum KCTC
13429]
Length = 447
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 54/84 (64%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
GE+ +Q+ S++ A ALDP+ GE +LD CAAPGGK+ I L+ ++G V ++D +KV
Sbjct: 231 GEVSIQDESSMLVARALDPKPGETVLDACAAPGGKSAHIGELMENKGSVTSLDLHKHKVK 290
Query: 301 DIQKLAAEMGLKCITTYKLDALKA 324
I++ A +GL I +DA KA
Sbjct: 291 LIKEAADRLGLTIIEAKTMDARKA 314
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F FDR+L+DAPCS G+ +P + ++ S R + Q + + LV+ GG
Sbjct: 318 FENGQFDRILVDAPCSGFGVIRRKPDMKYTKKPDDSAR-LAEIQLSILREIAPLVKKGGT 376
Query: 478 IVYSTCTINPGENE 491
+VYSTCT++ ENE
Sbjct: 377 LVYSTCTMDRTENE 390
>gi|394993912|ref|ZP_10386651.1| 16S rRNA methyltransferase B [Bacillus sp. 916]
gi|393805236|gb|EJD66616.1| 16S rRNA methyltransferase B [Bacillus sp. 916]
Length = 447
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 54/84 (64%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G + +Q+ S++ A ALDP+ GE +LD CAAPGGK+ IA L+ +EG + ++D +KV
Sbjct: 231 GRVSIQDESSMLVARALDPKPGETVLDACAAPGGKSAHIAELMENEGSLTSLDLHRHKVK 290
Query: 301 DIQKLAAEMGLKCITTYKLDALKA 324
I++ A +GL I +DA KA
Sbjct: 291 LIKEGAERLGLTIIDAQTMDARKA 314
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 421 FSPNSFDRVLLDAPCSALGL--RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGII 478
F FDRVL+DAPCS G+ R +T + R + Q + + LV+ GG +
Sbjct: 318 FGAERFDRVLVDAPCSGFGVIRRKPDMKYTKTPEDSRRLSEIQLGILREIAPLVKKGGTL 377
Query: 479 VYSTCTINPGENE 491
VYSTCT++ ENE
Sbjct: 378 VYSTCTMDRTENE 390
>gi|448656985|ref|ZP_21682524.1| tRNA and rRNA cytosine-C5-methylase [Haloarcula californiae ATCC
33799]
gi|445763027|gb|EMA14231.1| tRNA and rRNA cytosine-C5-methylase [Haloarcula californiae ATCC
33799]
Length = 303
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 64/131 (48%), Gaps = 8/131 (6%)
Query: 198 SGLYIGQGTAMMSRAGIFRASEGIA---VDMHNRIFQLP-----SFYDVLEGEIFLQNLP 249
S + + A + R A IA VD H+ +F LP + + G I Q
Sbjct: 27 SAIRVNTIKATVERVRTALADADIAYDPVDWHDGLFVLPEDSPGANWPYFHGWIHGQEEV 86
Query: 250 SIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEM 309
S++ A LDPQ GER+ D CAAPG KTT +A+L+ D GEVVA D + ++ ++ +
Sbjct: 87 SVIPATVLDPQPGERVWDACAAPGSKTTQLAALMEDTGEVVATDNNLGRISALRTNTERL 146
Query: 310 GLKCITTYKLD 320
G + D
Sbjct: 147 GATTVAVTHED 157
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 413 GRAENSKGFSPNSFDRVLLDAPCSALG-LRPRLFAAEE-TIQSLRNHGKYQRRMFDQAVQ 470
GR + K F +DR L+D PCS G +R E+ ++ + Q+ + +AV+
Sbjct: 158 GRNHSLKPFGGEGYDRALVDVPCSCEGTIRKNPDTLEDWSLSHVEGISGVQKGILKRAVE 217
Query: 471 LVRPGGIIVYSTCTINPGENEAL 493
+ PGG +VYSTCT P ENEA+
Sbjct: 218 VTEPGGTVVYSTCTFAPEENEAV 240
>gi|16078637|ref|NP_389456.1| RNA-binding Sun protein [Bacillus subtilis subsp. subtilis str.
168]
gi|221309449|ref|ZP_03591296.1| hypothetical protein Bsubs1_08691 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221313774|ref|ZP_03595579.1| hypothetical protein BsubsN3_08627 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221318698|ref|ZP_03599992.1| hypothetical protein BsubsJ_08561 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221322969|ref|ZP_03604263.1| hypothetical protein BsubsS_08667 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|402775819|ref|YP_006629763.1| RNA-binding Sun protein [Bacillus subtilis QB928]
gi|418033279|ref|ZP_12671756.1| hypothetical protein BSSC8_27000 [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|452914583|ref|ZP_21963210.1| ribosomal RNA small subunit methyltransferase B [Bacillus subtilis
MB73/2]
gi|3915867|sp|P94464.2|RSMB_BACSU RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|2337803|emb|CAA74264.1| putative Fmu protein [Bacillus subtilis subsp. subtilis str. 168]
gi|2633946|emb|CAB13447.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Bacillus subtilis
subsp. subtilis str. 168]
gi|351469427|gb|EHA29603.1| hypothetical protein BSSC8_27000 [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|402481001|gb|AFQ57510.1| RNA-binding Sun protein [Bacillus subtilis QB928]
gi|407958981|dbj|BAM52221.1| RNA-binding Sun protein [Synechocystis sp. PCC 6803]
gi|407964558|dbj|BAM57797.1| RNA-binding Sun protein [Bacillus subtilis BEST7003]
gi|452117003|gb|EME07398.1| ribosomal RNA small subunit methyltransferase B [Bacillus subtilis
MB73/2]
Length = 447
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 55/84 (65%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
GE+ +Q+ S++ A ALDP+ E +LD CAAPGGK+ IA L++++G V ++D +KV
Sbjct: 231 GEVSIQDESSMLVARALDPKSDETVLDACAAPGGKSAHIAELMKNKGSVTSLDLHKHKVK 290
Query: 301 DIQKLAAEMGLKCITTYKLDALKA 324
I++ A +GL I +DA KA
Sbjct: 291 LIKEAADRLGLTIIHAETMDARKA 314
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F FDR+L+DAPCS G+ +P + ++ S R + Q + + LV+ GG
Sbjct: 318 FENEQFDRILVDAPCSGFGVIRRKPDMKYTKKPDDSAR-LAEIQLSILREIAPLVKKGGT 376
Query: 478 IVYSTCTINPGENE 491
+VYSTCT++ EN+
Sbjct: 377 LVYSTCTMDRTEND 390
>gi|384265156|ref|YP_005420863.1| sun protein [Bacillus amyloliquefaciens subsp. plantarum YAU
B9601-Y2]
gi|387898153|ref|YP_006328449.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
amyloliquefaciens Y2]
gi|380498509|emb|CCG49547.1| sun protein [Bacillus amyloliquefaciens subsp. plantarum YAU
B9601-Y2]
gi|387172263|gb|AFJ61724.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
amyloliquefaciens Y2]
Length = 447
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 54/84 (64%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G + +Q+ S++ A ALDP+ GE +LD CAAPGGK+ IA L+ +EG + ++D +KV
Sbjct: 231 GRVSIQDESSMLVARALDPKPGETVLDACAAPGGKSAHIAELMENEGSLTSLDLHRHKVK 290
Query: 301 DIQKLAAEMGLKCITTYKLDALKA 324
I++ A +GL I +DA KA
Sbjct: 291 LIKEGAERLGLTIIDAQTMDARKA 314
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 419 KGFSPNSFDRVLLDAPCSALGL--RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGG 476
+ F FDR+L+DAPCS G+ R +T + R + Q + + LV+ GG
Sbjct: 316 EAFGAERFDRILVDAPCSGFGVIRRKPDMKYTKTPEDSRRLSEIQLGILREIAPLVKKGG 375
Query: 477 IIVYSTCTINPGENE 491
+VYSTCT++ ENE
Sbjct: 376 TLVYSTCTMDRTENE 390
>gi|384175316|ref|YP_005556701.1| ribosomal RNA small subunit methyltransferase B [Bacillus subtilis
subsp. subtilis str. RO-NN-1]
gi|349594540|gb|AEP90727.1| ribosomal RNA small subunit methyltransferase B [Bacillus subtilis
subsp. subtilis str. RO-NN-1]
Length = 447
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 56/84 (66%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
GE+ +Q+ S++ A ALDP+ E +LD CAAPGGK+ IA L++++G V+++D +KV
Sbjct: 231 GEVSIQDESSMLVARALDPKPDETVLDACAAPGGKSAHIAELMKNKGSVMSLDLHKHKVK 290
Query: 301 DIQKLAAEMGLKCITTYKLDALKA 324
I++ A +GL I +DA KA
Sbjct: 291 LIKEAADRLGLTIIHAETMDARKA 314
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F FDR+L+DAPCS G+ +P + ++ S R + Q + + LV+ GG
Sbjct: 318 FENEQFDRILVDAPCSGFGVIRRKPDMKYTKKPDDSAR-LAEIQLSILREIAPLVKKGGT 376
Query: 478 IVYSTCTINPGENE 491
+VYSTCT++ EN+
Sbjct: 377 LVYSTCTMDRTEND 390
>gi|375362218|ref|YP_005130257.1| sun protein [Bacillus amyloliquefaciens subsp. plantarum CAU B946]
gi|421731756|ref|ZP_16170879.1| 16S rRNA methyltransferase B [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|451347055|ref|YP_007445686.1| 16S rRNA methyltransferase B [Bacillus amyloliquefaciens IT-45]
gi|371568212|emb|CCF05062.1| sun protein [Bacillus amyloliquefaciens subsp. plantarum CAU B946]
gi|407073969|gb|EKE46959.1| 16S rRNA methyltransferase B [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|449850813|gb|AGF27805.1| 16S rRNA methyltransferase B [Bacillus amyloliquefaciens IT-45]
Length = 447
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 54/84 (64%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G + +Q+ S++ A ALDP+ GE +LD CAAPGGK+ IA L+ +EG + ++D +KV
Sbjct: 231 GRVSIQDESSMLVARALDPKPGETVLDACAAPGGKSAHIAELMENEGSLTSLDLHRHKVK 290
Query: 301 DIQKLAAEMGLKCITTYKLDALKA 324
I++ A +GL I +DA KA
Sbjct: 291 LIKEGAERLGLTIIDAQTMDARKA 314
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 419 KGFSPNSFDRVLLDAPCSALGL--RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGG 476
+ F FDR+L+DAPCS G+ R +T + R + Q + + LV+ GG
Sbjct: 316 EAFGAERFDRILVDAPCSGFGVIRRKPDMKYTKTPEDSRRLSEIQLGILREIAPLVKKGG 375
Query: 477 IIVYSTCTINPGENE 491
+VYSTCT++ ENE
Sbjct: 376 TLVYSTCTMDRTENE 390
>gi|449094266|ref|YP_007426757.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Bacillus subtilis
XF-1]
gi|449028181|gb|AGE63420.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Bacillus subtilis
XF-1]
Length = 447
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 55/84 (65%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
GE+ +Q+ S++ A ALDP+ E +LD CAAPGGK+ IA L++++G V ++D +KV
Sbjct: 231 GEVSIQDESSMLVARALDPKSDETVLDACAAPGGKSAHIAELMKNKGSVTSLDLHKHKVK 290
Query: 301 DIQKLAAEMGLKCITTYKLDALKA 324
I++ A +GL I +DA KA
Sbjct: 291 LIKEAADRLGLTIIHAETMDARKA 314
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F FDR+L+DAPCS G+ +P + ++ S R + Q + + LV+ GG
Sbjct: 318 FENEQFDRILVDAPCSGFGVIRRKPDMKYTKKPDDSAR-LAEIQLSILREIAPLVKKGGT 376
Query: 478 IVYSTCTINPGENE 491
+VYSTCT++ EN+
Sbjct: 377 LVYSTCTMDRTEND 390
>gi|430759003|ref|YP_007209724.1| ribosomal RNA small subunit methyltransferase B [Bacillus subtilis
subsp. subtilis str. BSP1]
gi|430023523|gb|AGA24129.1| Ribosomal RNA small subunit methyltransferase B [Bacillus subtilis
subsp. subtilis str. BSP1]
Length = 447
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 55/84 (65%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
GE+ +Q+ S++ A ALDP+ E +LD CAAPGGK+ IA L++++G V ++D +KV
Sbjct: 231 GEVSIQDESSMLVARALDPKSDETVLDACAAPGGKSAHIAELMKNKGSVTSLDLHKHKVK 290
Query: 301 DIQKLAAEMGLKCITTYKLDALKA 324
I++ A +GL I +DA KA
Sbjct: 291 LIKEAADRLGLTIIHAETMDARKA 314
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F FDR+L+DAPCS G+ +P + ++ S R + Q + + LV+ GG
Sbjct: 318 FENEQFDRILVDAPCSGFGVIRRKPDMKYTKKPDDSAR-LAEIQLSILREIAPLVKKGGT 376
Query: 478 IVYSTCTINPGENE 491
+VYSTCT++ EN+
Sbjct: 377 LVYSTCTMDRTEND 390
>gi|350265887|ref|YP_004877194.1| ribosomal RNA small subunit methyltransferase B [Bacillus subtilis
subsp. spizizenii TU-B-10]
gi|349598774|gb|AEP86562.1| ribosomal RNA small subunit methyltransferase B [Bacillus subtilis
subsp. spizizenii TU-B-10]
Length = 447
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 54/84 (64%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
GE+ +Q+ S++ A ALDP+ GE +LD CAAPGGK+ I L+ ++G V ++D +KV
Sbjct: 231 GEVSIQDESSMLVARALDPKPGETVLDACAAPGGKSAHIGELMENKGSVTSLDLHKHKVK 290
Query: 301 DIQKLAAEMGLKCITTYKLDALKA 324
I++ A +GL I +DA KA
Sbjct: 291 LIKEAADRLGLTIIDAKTMDARKA 314
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F FDR+L+DAPCS G+ +P + ++ S R + Q + + LV+ GG
Sbjct: 318 FENGQFDRILVDAPCSGFGVIRRKPDMKYTKKPDDSAR-LAEIQLSILREIAPLVKKGGT 376
Query: 478 IVYSTCTINPGENE 491
+VYSTCT++ EN+
Sbjct: 377 LVYSTCTMDRTEND 390
>gi|386725760|ref|YP_006192086.1| 16S rRNA methyltransferase B [Paenibacillus mucilaginosus K02]
gi|384092885|gb|AFH64321.1| 16S rRNA methyltransferase B [Paenibacillus mucilaginosus K02]
Length = 505
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 53/85 (62%)
Query: 237 DVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296
D EG +Q+ S++ A +DPQ GER+LD CAAPGGKTT +A ++ GE+VA D
Sbjct: 284 DYAEGLYSIQDESSMLVAEWVDPQPGERVLDCCAAPGGKTTHLAEKMQGRGEIVACDVHE 343
Query: 297 NKVMDIQKLAAEMGLKCITTYKLDA 321
+K I++ A +G + ITT DA
Sbjct: 344 HKHGLIREQAVRLGHESITTLTADA 368
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 421 FSPNSFDRVLLDAPCSALGL--RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGII 478
++P SFDR+LLDAPCS LG+ R +T L Q+ + + L++PGG++
Sbjct: 375 YAPESFDRILLDAPCSGLGVIRRKPDMKWTKTEAELGEICSIQQELLEAVHGLLKPGGVL 434
Query: 479 VYSTCTINPGEN 490
VYSTCT+ P EN
Sbjct: 435 VYSTCTVEPAEN 446
>gi|344211568|ref|YP_004795888.1| tRNA and rRNA cytosine-C5-methylase [Haloarcula hispanica ATCC
33960]
gi|343782923|gb|AEM56900.1| tRNA and rRNA cytosine-C5-methylase [Haloarcula hispanica ATCC
33960]
Length = 303
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 55/103 (53%), Gaps = 5/103 (4%)
Query: 223 VDMHNRIFQLP-----SFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTT 277
VD H+ +F LP + + G I Q S++ A LDPQ GER+ D CAAPG KTT
Sbjct: 55 VDWHDGLFVLPEDSPGANWPYFHGWIHGQEEVSVIPATVLDPQPGERVWDACAAPGSKTT 114
Query: 278 AIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
+A+L+ D GEVVA D + ++ ++ +G + D
Sbjct: 115 QLAALIEDTGEVVATDNNLGRISALRTNTERLGATTVAVTHED 157
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 413 GRAENSKGFSPNSFDRVLLDAPCSALG-LRPRLFAAEE-TIQSLRNHGKYQRRMFDQAVQ 470
GR + K F +DR L+D PCS G +R E+ T+ + Q+ + +AV+
Sbjct: 158 GRNHSLKPFGGEGYDRALVDVPCSCEGTIRKNPDTLEDWTLSHVEGISGVQKGILKRAVE 217
Query: 471 LVRPGGIIVYSTCTINPGENEAL 493
+ PGG +VYSTCT P ENEA+
Sbjct: 218 VTEPGGTVVYSTCTFAPEENEAV 240
>gi|284928897|ref|YP_003421419.1| ribosomal RNA small subunit methyltransferase RsmB [cyanobacterium
UCYN-A]
gi|284809356|gb|ADB95061.1| ribosomal RNA small subunit methyltransferase RsmB [cyanobacterium
UCYN-A]
Length = 453
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 60/93 (64%), Gaps = 3/93 (3%)
Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
I LP F ++G+ +Q++ + + ++ LDP+ GE ++D CAAPGGKTT IA L+RD+G
Sbjct: 228 IKNLPGF---IKGDWTVQDISAQLVSYLLDPKIGETVIDACAAPGGKTTHIAELMRDKGL 284
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
++A DR +++ IQ+ + L+ I K D+
Sbjct: 285 ILACDRISSRLTKIQQNIERLKLRSIKLVKGDS 317
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 424 NSF-DRVLLDAPCSALGLRPRL--FAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
N+F DRVL+DAPCS LG R +T + ++ Q+ + D+A + V+P G++VY
Sbjct: 324 NNFADRVLVDAPCSGLGTLHRNPDIRWRQTPEKIKQLSIIQQEILDKASKWVKPNGVLVY 383
Query: 481 STCTINPGENEAL 493
STCT+N ENE +
Sbjct: 384 STCTLNVSENETI 396
>gi|299535921|ref|ZP_07049241.1| ribosomal RNA small subunit methyltransferase B [Lysinibacillus
fusiformis ZC1]
gi|424738860|ref|ZP_18167289.1| ribosomal RNA small subunit methyltransferase B [Lysinibacillus
fusiformis ZB2]
gi|298728673|gb|EFI69228.1| ribosomal RNA small subunit methyltransferase B [Lysinibacillus
fusiformis ZC1]
gi|422947344|gb|EKU41741.1| ribosomal RNA small subunit methyltransferase B [Lysinibacillus
fusiformis ZB2]
Length = 453
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 54/85 (63%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
EG I +Q+ S++ A+ L+P G R+LDMCAAPGGKTT IA ++++EG ++A D +K+
Sbjct: 235 EGMITIQDESSMIPANVLNPSPGMRVLDMCAAPGGKTTHIAEIMQNEGSILATDLHPHKL 294
Query: 300 MDIQKLAAEMGLKCITTYKLDALKA 324
I +GL + T +D KA
Sbjct: 295 DLIDHNTERLGLDIVETAPIDGRKA 319
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 8/72 (11%)
Query: 425 SFDRVLLDAPCSALGLRPR-----LFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIV 479
SFD +L+DAPCS LG+ R EE ++SL+ K Q + D A ++++ G +V
Sbjct: 327 SFDAILVDAPCSGLGVMRRKPDIKYTKREEDLESLQ---KIQLALLDAATKVLKTDGKLV 383
Query: 480 YSTCTINPGENE 491
YSTCT++ ENE
Sbjct: 384 YSTCTVDIQENE 395
>gi|294791792|ref|ZP_06756940.1| ribosomal RNA small subunit methyltransferase B [Veillonella sp.
6_1_27]
gi|294457022|gb|EFG25384.1| ribosomal RNA small subunit methyltransferase B [Veillonella sp.
6_1_27]
Length = 451
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 52/79 (65%)
Query: 238 VLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHN 297
VLEG I + S++ AH +DPQ GERILD CAAPGGK+ +ASL+ + G +++ D +
Sbjct: 238 VLEGHITFMDKASMLVAHVVDPQPGERILDCCAAPGGKSMHMASLMNNTGAIMSCDIYDH 297
Query: 298 KVMDIQKLAAEMGLKCITT 316
K+ I + A +G+ I+T
Sbjct: 298 KLELINQNAERLGVSIIST 316
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 45/70 (64%), Gaps = 2/70 (2%)
Query: 426 FDRVLLDAPCSALG-LRPRL-FAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTC 483
FDRVL+DAPCS LG L+ +L +T L Q + ++A ++V+ G +VYSTC
Sbjct: 332 FDRVLVDAPCSGLGILQKKLDMRWRKTESLLIKLPLLQLEILEKASEMVKVNGYLVYSTC 391
Query: 484 TINPGENEAL 493
T+N GENEA+
Sbjct: 392 TMNSGENEAV 401
>gi|425450552|ref|ZP_18830377.1| Ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa PCC 7941]
gi|389768554|emb|CCI06369.1| Ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa PCC 7941]
Length = 446
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 64/123 (52%), Gaps = 11/123 (8%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G LQ++ + + + LDPQ GE I+D CAAPGGKTT IA L+ D+G ++A D++ +++
Sbjct: 234 GNYTLQDISAQLVTYLLDPQPGETIIDACAAPGGKTTHIAELMGDQGRILACDQTASRLR 293
Query: 301 DIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEV 360
++ + LK I + D S D P C D I + S LHK +
Sbjct: 294 QLEANIKRLDLKAIEIHLGD----------SRDRPQWCGIADRVLIDAPCSGLGTLHK-L 342
Query: 361 PSI 363
P I
Sbjct: 343 PDI 345
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 427 DRVLLDAPCSALGLRPRL--FAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCT 484
DRVL+DAPCS LG +L +T ++L K Q + A V+P GI+VY+TCT
Sbjct: 325 DRVLIDAPCSGLGTLHKLPDIRWRQTPENLPVLAKRQGELLASAATWVKPKGILVYATCT 384
Query: 485 INPGENE 491
+NP ENE
Sbjct: 385 LNPLENE 391
>gi|193700064|ref|XP_001946119.1| PREDICTED: putative methyltransferase NSUN5-like [Acyrthosiphon
pisum]
Length = 459
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 60/91 (65%), Gaps = 3/91 (3%)
Query: 235 FYDVLE---GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVA 291
FY++ E G + +Q+ S + A+ L+P+ +LDMCAAPG KT+ +A+++++ G++ A
Sbjct: 74 FYEIEEYNNGSLIVQDKASCLAAYLLNPKSNSTVLDMCAAPGMKTSHLAAIMQNTGKLYA 133
Query: 292 VDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322
VDRS + +Q + + G++ + T+ +DAL
Sbjct: 134 VDRSKERFYILQNMLEKYGVQNVETFNMDAL 164
>gi|448666899|ref|ZP_21685544.1| tRNA and rRNA cytosine-C5-methylase [Haloarcula amylolytica JCM
13557]
gi|445772030|gb|EMA23086.1| tRNA and rRNA cytosine-C5-methylase [Haloarcula amylolytica JCM
13557]
Length = 303
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 55/103 (53%), Gaps = 5/103 (4%)
Query: 223 VDMHNRIFQLP-----SFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTT 277
VD H+ +F LP + + G I Q S++ A LDPQ GER+ D CAAPG KTT
Sbjct: 55 VDWHDGLFVLPEDSPGANWPYFHGWIHGQEEVSVIPATVLDPQPGERVWDACAAPGSKTT 114
Query: 278 AIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
+A+L+ D GEVVA D + ++ ++ +G + D
Sbjct: 115 QLAALMEDTGEVVATDNNLGRISALRTNTERLGATTVAVTHED 157
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 413 GRAENSKGFSPNSFDRVLLDAPCSALG-LRPRLFAAEE-TIQSLRNHGKYQRRMFDQAVQ 470
GR + K F +DR L+D PCS G +R E+ T+ + Q+ + +A++
Sbjct: 158 GRNHSLKPFGGEEYDRALVDVPCSCEGTIRKNPDTLEDWTLSHVEGISGVQKGILKRAIE 217
Query: 471 LVRPGGIIVYSTCTINPGENEAL 493
+ PGG +VYSTCT P ENEA+
Sbjct: 218 VTEPGGTVVYSTCTFAPEENEAV 240
>gi|386758297|ref|YP_006231513.1| protein RsmB [Bacillus sp. JS]
gi|384931579|gb|AFI28257.1| RsmB [Bacillus sp. JS]
Length = 447
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 55/84 (65%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
GE+ +Q+ S++ A ALDP+ E +LD CAAPGGK+ IA L++++G V ++D +KV
Sbjct: 231 GEVSIQDESSMLVARALDPKPDETVLDACAAPGGKSAHIAELMKNKGSVTSLDLHKHKVK 290
Query: 301 DIQKLAAEMGLKCITTYKLDALKA 324
I++ A +GL I +DA KA
Sbjct: 291 LIKEAADRLGLTIIHAETMDARKA 314
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F FDR+L+DAPCS G+ +P + ++ S R + Q + + LV+ GG
Sbjct: 318 FENEKFDRILVDAPCSGFGVIRRKPDMKYTKKPDDSAR-LAEIQLSILREIAPLVKKGGT 376
Query: 478 IVYSTCTINPGENE 491
+VYSTCT++ EN+
Sbjct: 377 LVYSTCTMDRTEND 390
>gi|229086418|ref|ZP_04218594.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
Rock3-44]
gi|228696934|gb|EEL49743.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
Rock3-44]
Length = 431
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 65/110 (59%), Gaps = 9/110 (8%)
Query: 226 HNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRD 285
H FQ +G + +Q+ S++ A AL P +G+++LD CAAPGGKTT IA L+
Sbjct: 208 HTEAFQ--------KGFLSIQDESSMLVARALAPAEGDKVLDSCAAPGGKTTHIAERLKG 259
Query: 286 EGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRR-KNESNDE 334
G+V+++D +KV IQ+ A +GL+ + T LDA K NES D+
Sbjct: 260 TGQVMSLDLHPHKVRLIQQQAKRLGLENVETKALDARKVEEHFANESFDK 309
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F+ SFD++L+DAPCS G+ +P + +E S R Q + ++ L++ GG
Sbjct: 302 FANESFDKILVDAPCSGFGVIRRKPDIKLGKEKGDSER-LSTIQLSILEKVAPLLKTGGR 360
Query: 478 IVYSTCTINPGENE 491
+VYSTCTI ENE
Sbjct: 361 LVYSTCTIEKIENE 374
>gi|321315340|ref|YP_004207627.1| 16S rRNA methyltransferase B [Bacillus subtilis BSn5]
gi|320021614|gb|ADV96600.1| 16S rRNA methyltransferase B [Bacillus subtilis BSn5]
Length = 447
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 55/84 (65%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
GE+ +Q+ S++ A ALDP+ E +LD CAAPGGK+ IA L++++G V ++D +KV
Sbjct: 231 GEVSIQDESSMLVARALDPKPDETVLDACAAPGGKSAHIAELMKNKGSVTSLDLHKHKVK 290
Query: 301 DIQKLAAEMGLKCITTYKLDALKA 324
I++ A +GL I +DA KA
Sbjct: 291 LIKEAADRLGLTIIHAETMDARKA 314
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F FDR+L+DAPCS G+ +P + ++ S R + Q + + LV+ GG
Sbjct: 318 FENEQFDRILVDAPCSGFGVIRRKPDMKYTKKPDDSAR-LAEIQLSILREIAPLVKKGGT 376
Query: 478 IVYSTCTINPGENE 491
+VYSTCT++ EN+
Sbjct: 377 LVYSTCTMDRTEND 390
>gi|448630650|ref|ZP_21673230.1| tRNA and rRNA cytosine-C5-methylase [Haloarcula vallismortis ATCC
29715]
gi|445755683|gb|EMA07066.1| tRNA and rRNA cytosine-C5-methylase [Haloarcula vallismortis ATCC
29715]
Length = 303
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 55/103 (53%), Gaps = 5/103 (4%)
Query: 223 VDMHNRIFQLP-----SFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTT 277
VD H+ +F LP + + G I Q S++ A LDPQ GER+ D CAAPG KTT
Sbjct: 55 VDWHDGLFVLPEDSPGANWPYFHGWIHGQEEVSVIPATVLDPQPGERVWDACAAPGSKTT 114
Query: 278 AIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
+A+L+ D GEVVA D + ++ ++ +G + D
Sbjct: 115 QLAALMDDTGEVVATDNNLGRISALRTNTERLGATTVAVTHED 157
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 413 GRAENSKGFSPNSFDRVLLDAPCSALG-LRPRLFAAEE-TIQSLRNHGKYQRRMFDQAVQ 470
GR + K F +DR L+D PCS G +R E+ T+ + Q+ + +AV+
Sbjct: 158 GRNHSLKPFGGEGYDRALVDVPCSCEGTIRKNPDTLEDWTLSHVEGISGVQKGILKRAVE 217
Query: 471 LVRPGGIIVYSTCTINPGENEAL 493
+ PGG +VYSTCT P ENEA+
Sbjct: 218 VTEPGGTVVYSTCTFAPEENEAV 240
>gi|152976231|ref|YP_001375748.1| sun protein [Bacillus cytotoxicus NVH 391-98]
gi|152024983|gb|ABS22753.1| sun protein [Bacillus cytotoxicus NVH 391-98]
Length = 444
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 66/110 (60%), Gaps = 9/110 (8%)
Query: 226 HNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRD 285
H FQ +G + +Q+ S++ A A++P KG+ ILD CAAPGGKTT +A LR
Sbjct: 221 HTEAFQ--------KGFLSIQDESSMLVARAVEPSKGDMILDSCAAPGGKTTHMAERLRG 272
Query: 286 EGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRR-KNESNDE 334
G+V+++D +KV I++ A +GL+ + T LDA K +NES D+
Sbjct: 273 TGKVMSLDLHDHKVRLIKQQANRLGLENVETKALDARKVQEHFQNESFDK 322
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 45/78 (57%), Gaps = 4/78 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F SFD++L+DAPCS G+ +P + +E S R Q+ + D+ L++ GG
Sbjct: 315 FQNESFDKILVDAPCSGFGVIRRKPDIKLGKEKGDSER-LSTIQQTILDKVAPLLKTGGR 373
Query: 478 IVYSTCTINPGENEALCA 495
+VYSTCTI ENE + A
Sbjct: 374 LVYSTCTIEKIENEQVVA 391
>gi|320101269|ref|YP_004176861.1| Fmu (Sun) domain-containing protein [Desulfurococcus mucosus DSM
2162]
gi|319753621|gb|ADV65379.1| Fmu (Sun) domain protein [Desulfurococcus mucosus DSM 2162]
Length = 380
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 86/189 (45%), Gaps = 36/189 (19%)
Query: 126 VIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVL 185
V+V K A +++ GA +Y PGV+ SS KGD + L +T
Sbjct: 80 VVVDEKTAVSLMLGANLYRPGVVKSSSF-RKGDRL----------------LAVT----- 117
Query: 186 QGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDV---LEGE 242
R G + A +S + RA +G+ + F+ P ++ +G
Sbjct: 118 -----------RHGTPVACLEATVSSRSLHRAEKGLVAYNTSSPFRAPRLSELDIYSQGL 166
Query: 243 IFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDI 302
+ Q PSI T+ L P+ GE ++DM A+PGGKT+ I L R VVA DRS KV +
Sbjct: 167 FYPQGYPSIGTSRILGPEPGELVVDMNASPGGKTSHIVQLTRGRALVVAFDRSPGKVEKL 226
Query: 303 QKLAAEMGL 311
++ +GL
Sbjct: 227 KETLTNLGL 235
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Query: 427 DRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTIN 486
DRVL+D PCS LG+RPRL + ++ + + YQR+ A ++V+PGG IVYSTCT+
Sbjct: 260 DRVLVDPPCSNLGVRPRL-VDDRGVRDVASLSSYQRQFLKAAARVVKPGGYIVYSTCTLT 318
Query: 487 PGENE 491
ENE
Sbjct: 319 LEENE 323
>gi|17228315|ref|NP_484863.1| sun protein [Nostoc sp. PCC 7120]
gi|17130165|dbj|BAB72777.1| sun protein [Nostoc sp. PCC 7120]
Length = 449
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 55/86 (63%), Gaps = 3/86 (3%)
Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
I +LP F +G +Q+ + + H LDPQ GE I+D CAAPGGKTT IA L++DEG+
Sbjct: 225 IQKLPGFS---QGWWIVQDASAQLVGHLLDPQPGEVIIDACAAPGGKTTHIAELMKDEGK 281
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKCI 314
V A DR+ +++ +++ A + L I
Sbjct: 282 VWAGDRTASRLRKLKENAQRLNLHSI 307
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Query: 427 DRVLLDAPCSALGLRPRLFAAE--ETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCT 484
DRVLLDAPCS LG R A +T +S++ Q+ + + V+ GG++VY+TCT
Sbjct: 325 DRVLLDAPCSGLGTLHRHADARWRQTPESVQELSMLQKELLAHTSKFVKVGGVLVYATCT 384
Query: 485 INPGENE 491
++P ENE
Sbjct: 385 LHPAENE 391
>gi|212225119|ref|YP_002308355.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus onnurineus NA1]
gi|212010076|gb|ACJ17458.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus onnurineus NA1]
Length = 450
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 54/81 (66%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G+ +Q+L S AH L P+ GER+LD+ AAPG KT A+L+ ++GE+VAVD S++++
Sbjct: 240 QGKFVIQDLASAYVAHVLAPEPGERVLDLAAAPGSKTFHAAALMENKGEIVAVDYSYDRL 299
Query: 300 MDIQKLAAEMGLKCITTYKLD 320
M +++ +G+K + D
Sbjct: 300 MRMKEKMKLLGIKNVKLVHAD 320
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 12/73 (16%)
Query: 426 FDRVLLDAPCSALG-------LRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGII 478
FD+++LDAPCS+ G ++ R E+ I+ + N QR M A + +R GG +
Sbjct: 330 FDKIILDAPCSSSGTYRQFPEVKWRF--DEKKIKRIIN---VQRNMLRNAHENLRDGGEM 384
Query: 479 VYSTCTINPGENE 491
YSTC+I E+E
Sbjct: 385 TYSTCSIRIDEDE 397
>gi|18977925|ref|NP_579282.1| nol1-nop2-sun family nucleolar protein I [Pyrococcus furiosus DSM
3638]
gi|397652046|ref|YP_006492627.1| nol1-nop2-sun family nucleolar protein I [Pyrococcus furiosus COM1]
gi|18893693|gb|AAL81677.1| putative nucleolar protein I (nol1-nop2-sun family) [Pyrococcus
furiosus DSM 3638]
gi|393189637|gb|AFN04335.1| nol1-nop2-sun family nucleolar protein I [Pyrococcus furiosus COM1]
Length = 311
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 51/73 (69%), Gaps = 2/73 (2%)
Query: 424 NSFDRVLLDAPCSALGL--RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYS 481
N+FD++LLDAPCS++G+ + FA ++ + H K Q+R+ A + ++PGG++VYS
Sbjct: 178 NTFDKILLDAPCSSVGMIRKNFKFARTWSMGKVYYHSKLQKRLILAAYKALKPGGVLVYS 237
Query: 482 TCTINPGENEALC 494
TCT++P ENE +
Sbjct: 238 TCTVDPLENEEVV 250
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 35/58 (60%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNK 298
G I Q S++ LDPQ GE +LDM AAPG KTT IA + +EG ++A D ++
Sbjct: 90 GLIIPQEASSMIPPVVLDPQPGELVLDMAAAPGSKTTQIAQYMNNEGCIIANDAKRDR 147
>gi|448688658|ref|ZP_21694395.1| tRNA and rRNA cytosine-C5-methylase [Haloarcula japonica DSM 6131]
gi|445778528|gb|EMA29470.1| tRNA and rRNA cytosine-C5-methylase [Haloarcula japonica DSM 6131]
Length = 303
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 56/103 (54%), Gaps = 5/103 (4%)
Query: 223 VDMHNRIFQLP-----SFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTT 277
VD H+ +F LP + + +G I Q S++ A LDPQ GER+ D CAAPG KTT
Sbjct: 55 VDWHDGLFVLPEDSPGANWPYFQGWIHGQEEVSVIPAEVLDPQPGERVWDACAAPGSKTT 114
Query: 278 AIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
+A+L+ D GE+VA D + ++ ++ +G + D
Sbjct: 115 QLAALMDDTGELVATDNNLGRISALRTNTERLGATTVAVTHED 157
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 413 GRAENSKGFSPNSFDRVLLDAPCSALG-LRPRLFAAEE-TIQSLRNHGKYQRRMFDQAVQ 470
GR + K F +DR L+D PCS G +R E+ T+ + Q+ + +AV+
Sbjct: 158 GRNHSLKPFGGEGYDRALVDVPCSCEGTIRKNPDTLEDWTLSHVEGISGVQKGILKRAVE 217
Query: 471 LVRPGGIIVYSTCTINPGENEAL 493
+ PGG +VYSTCT P ENEA+
Sbjct: 218 VTEPGGTVVYSTCTFAPEENEAV 240
>gi|407846543|gb|EKG02631.1| nucleolar protein, putative [Trypanosoma cruzi]
Length = 561
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 47/69 (68%), Gaps = 2/69 (2%)
Query: 426 FDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGG--IIVYSTC 483
F +LLD PC+ +GLRP+L A T Q +R+ YQR++FD V+++R G ++VYSTC
Sbjct: 379 FHGILLDPPCTGMGLRPKLNAHLITPQGIRDSADYQRKLFDSCVKMLRRTGTSVLVYSTC 438
Query: 484 TINPGENEA 492
TI ENEA
Sbjct: 439 TITLDENEA 447
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 76/182 (41%), Gaps = 41/182 (22%)
Query: 132 CAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTD 191
CAEAVLRG+ V+ PGV++ G V V + ++ + G G R T L
Sbjct: 131 CAEAVLRGSDVFAPGVVSFVGSFFAGQEVFVGMYLQPASASTSGGGGTDRRTRL------ 184
Query: 192 PYYFERSGLYIGQGTAMMSRAGIFRASE-GIAVDMHNRIFQLPS---FYDVLEGEI---- 243
L +G GTA+M R I R + G+AV + PS +L+ +
Sbjct: 185 --------LCVGAGTALMDRREIIRGRQNGVAVRTNWTPMAQPSKSLLSSMLDAAVTTLL 236
Query: 244 ----------FLQNLPSIVTAHALDPQKGE---------RILDMCAAPGGKTTAIASLLR 284
FLQN S+V L Q LD CAAPGGK + + SLL
Sbjct: 237 KAGAPETSSFFLQNYSSMVAVDVLVQQFSSIDIQREGPLAFLDACAAPGGKASLLLSLLH 296
Query: 285 DE 286
++
Sbjct: 297 EK 298
>gi|146304380|ref|YP_001191696.1| Fmu (Sun) domain-containing protein [Metallosphaera sedula DSM
5348]
gi|145702630|gb|ABP95772.1| Fmu (Sun) domain protein [Metallosphaera sedula DSM 5348]
Length = 346
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 48/69 (69%), Gaps = 1/69 (1%)
Query: 427 DRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTIN 486
D+V++D PCSALG+RP++F +T + ++N YQ++ + A ++++PGG ++YSTCT
Sbjct: 249 DKVMIDPPCSALGVRPKIFD-RKTKEDIQNFSSYQKQFLNSAYKILKPGGTVIYSTCTTT 307
Query: 487 PGENEALCA 495
ENE +
Sbjct: 308 LAENEEVIT 316
>gi|448640022|ref|ZP_21677170.1| tRNA and rRNA cytosine-C5-methylase [Haloarcula sinaiiensis ATCC
33800]
gi|445762549|gb|EMA13770.1| tRNA and rRNA cytosine-C5-methylase [Haloarcula sinaiiensis ATCC
33800]
Length = 303
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 64/131 (48%), Gaps = 8/131 (6%)
Query: 198 SGLYIGQGTAMMSRAGIFRASEGIA---VDMHNRIFQLP-----SFYDVLEGEIFLQNLP 249
S + + A + R A IA VD H+ +F LP + + G I Q
Sbjct: 27 SAIRVNTIKATVERVRTALADADIAYDPVDWHDGLFVLPEDSPGANWPYFHGWIHGQEEV 86
Query: 250 SIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEM 309
S++ A LDPQ GER+ D CAAPG KTT +A+L+ D GEVVA D + ++ ++ +
Sbjct: 87 SVIPATVLDPQPGERVWDACAAPGSKTTQLAALMDDTGEVVATDNNLGRISALRTNTERL 146
Query: 310 GLKCITTYKLD 320
G + D
Sbjct: 147 GATTVAVTHED 157
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 413 GRAENSKGFSPNSFDRVLLDAPCSALG-LRPRLFAAEE-TIQSLRNHGKYQRRMFDQAVQ 470
GR + K F +DR L+D PCS G +R E+ ++ + Q+ + +AV+
Sbjct: 158 GRNHSLKPFGGEGYDRALVDVPCSCEGTIRKNPDTLEDWSLSHVEGISGVQKGILKRAVE 217
Query: 471 LVRPGGIIVYSTCTINPGENEAL 493
+ PGG +VYSTCT P ENEA+
Sbjct: 218 VTEPGGTVVYSTCTFAPEENEAV 240
>gi|389860893|ref|YP_006363133.1| Fmu (Sun) domain-containing protein [Thermogladius cellulolyticus
1633]
gi|388525797|gb|AFK50995.1| Fmu (Sun) domain protein [Thermogladius cellulolyticus 1633]
Length = 392
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 77/279 (27%), Positives = 131/279 (46%), Gaps = 61/279 (21%)
Query: 34 RISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTISE 93
R+ + LT P +RVNTL+T ++V++ L R + +
Sbjct: 32 RLLEMLTYPPKRLYLRVNTLRTRREEVVESL--------------------RRRGVEVRP 71
Query: 94 SQIPGLEYVVFVKGSGPHTI-DYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSS 152
+ LE ++++ GP+ + D+G + ++V AE+++ GA +Y PGV+A
Sbjct: 72 DDL--LEEAIYIELEGPYQVRDHG-------RRIVVDDIAAESLMMGANLYRPGVVAYDM 122
Query: 153 HVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRA 212
++GDV+ AV + G+ + +V +D R GL A+ +R+
Sbjct: 123 F-KRGDVLT---AVTK----NGFVVAELEASV----SSDQLKSMRKGL-----VAVNTRS 165
Query: 213 GIFRASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAP 272
+++A I +LP F EG ++ Q+ PS+V + P E ++DM A+P
Sbjct: 166 -VYKAPP---------IAELPEFK---EGLVYPQSFPSMVAGRLVFP-GSELVVDMNASP 211
Query: 273 GGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL 311
GGKT I L R + V+AVDRS KV + + A +GL
Sbjct: 212 GGKTGHIVQLSRGKALVLAVDRSVGKVEKLVENLARLGL 250
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 48/68 (70%), Gaps = 1/68 (1%)
Query: 424 NSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTC 483
N D+VL+D PC+ LG+RP+L + ++T++ N YQR+ A +L+RPGG++VYSTC
Sbjct: 272 NRVDKVLIDPPCTNLGVRPKL-SFKKTLRDAINLADYQRQFMKVAGRLLRPGGVLVYSTC 330
Query: 484 TINPGENE 491
T+ ENE
Sbjct: 331 TLTRVENE 338
>gi|390962131|ref|YP_006425965.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus sp. CL1]
gi|390520439|gb|AFL96171.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus sp. CL1]
Length = 311
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 51/73 (69%), Gaps = 2/73 (2%)
Query: 424 NSFDRVLLDAPCSALGL-RPRL-FAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYS 481
N+FDRVLLDAPCS++G+ R RL F E ++ + + Q+R+ A + ++PGG +VYS
Sbjct: 175 NTFDRVLLDAPCSSIGMIRKRLRFLEEWRLRGVIKYMNIQKRLILAAYRALKPGGTLVYS 234
Query: 482 TCTINPGENEALC 494
TCTI+P ENE +
Sbjct: 235 TCTIDPVENEEVV 247
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 32/53 (60%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVD 293
G IF Q S++ L+P+ GE +LDM AAPG KT IA + + G ++A D
Sbjct: 87 GLIFGQEASSMIPPVVLEPKPGELVLDMAAAPGSKTGQIAQYMENRGCIIAND 139
>gi|332159134|ref|YP_004424413.1| sun protein (fmu protein) [Pyrococcus sp. NA2]
gi|331034597|gb|AEC52409.1| sun protein (fmu protein) [Pyrococcus sp. NA2]
Length = 450
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 54/81 (66%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G +Q+L S AH L+P+ GER+LD+ AAPG KT A+L+ ++GE+VAVD S++++
Sbjct: 240 KGYFVIQDLASAYVAHVLNPEPGERVLDLAAAPGSKTFHAAALMENKGEIVAVDYSYDRL 299
Query: 300 MDIQKLAAEMGLKCITTYKLD 320
M +++ +G+K + D
Sbjct: 300 MKMKERMKILGVKNVKLVHAD 320
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 18/105 (17%)
Query: 400 RMRNGPGRNQCLGGR------AENSKGFSPNSFDRVLLDAPCSALG-------LRPRLFA 446
R+ R + LG + A+ + FD+V+LDAPCS+ G ++ R
Sbjct: 298 RLMKMKERMKILGVKNVKLVHADGQSFLDKDKFDKVILDAPCSSSGTYRQFPEVKWRF-- 355
Query: 447 AEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENE 491
EE I+ + N QR M A + ++ GG + YSTC+I ENE
Sbjct: 356 DEEKIKRIIN---VQRNMLLNAYRNLKEGGEMTYSTCSIRIDENE 397
>gi|242398901|ref|YP_002994325.1| TRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family, fused to N-
terminal NusB regulator domain [Thermococcus sibiricus
MM 739]
gi|242265294|gb|ACS89976.1| TRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family, fused to N-
terminal NusB regulator domain [Thermococcus sibiricus
MM 739]
Length = 450
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 51/84 (60%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
EG +Q+L S AH L P+KGER+LD+ AAPG KT +A L+ + GE++AVD S ++
Sbjct: 240 EGYFVIQDLASAYVAHVLSPEKGERVLDLAAAPGSKTFHVAQLMENTGEIIAVDYSLERL 299
Query: 300 MDIQKLAAEMGLKCITTYKLDALK 323
++ +G+K + D +K
Sbjct: 300 RKMETKMKILGVKNVKLVHADGMK 323
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 8/103 (7%)
Query: 397 NMRRMRNGPGRNQCLGGR------AENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEET 450
++ R+R + + LG + A+ K FD+++LDAPCS+ G + +
Sbjct: 295 SLERLRKMETKMKILGVKNVKLVHADGMKFKDMRKFDKIILDAPCSSSGTYRQFPEVKWR 354
Query: 451 I--QSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENE 491
+ ++ + Q+ M A + +R G + YSTC+I ENE
Sbjct: 355 FNKEKIKKVIQVQKAMIRNAYKNLRDEGEMTYSTCSIRIDENE 397
>gi|425436930|ref|ZP_18817360.1| Ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa PCC 9432]
gi|389678290|emb|CCH92851.1| Ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa PCC 9432]
Length = 446
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 61/118 (51%), Gaps = 10/118 (8%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G LQ++ + + + LDPQ GE I+D CAAPGGKTT IA L+ D+G ++A D++ +++
Sbjct: 234 GNYTLQDISAQLVTYLLDPQPGETIIDACAAPGGKTTHIAELMGDQGRILACDQTASRLR 293
Query: 301 DIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHK 358
++ + LK I + D S D P C D I + S LHK
Sbjct: 294 QLEANIKRLDLKAIEIHLGD----------SRDRPQWCGIADRVLIDAPCSGLGTLHK 341
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 427 DRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTC 483
DRVL+DAPCS LG RP + +T ++L K Q + A V+P GI+VY+TC
Sbjct: 325 DRVLIDAPCSGLGTLHKRPDI-RWRQTPENLPVLAKRQGELLASAATWVKPKGILVYATC 383
Query: 484 TINPGENE 491
T+NP ENE
Sbjct: 384 TLNPLENE 391
>gi|158320464|ref|YP_001512971.1| sun protein [Alkaliphilus oremlandii OhILAs]
gi|158140663|gb|ABW18975.1| sun protein [Alkaliphilus oremlandii OhILAs]
Length = 445
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 64/104 (61%), Gaps = 5/104 (4%)
Query: 217 ASEGIAVD-MHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGK 275
E I V +HN + FY +G I +Q++ S++ A AL P++GE ++D+C+APGGK
Sbjct: 210 VEEAIVVKGIHN--IEKTDFYK--KGYIQIQDISSMLVAKALAPKEGELVMDICSAPGGK 265
Query: 276 TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKL 319
TT IA L+ ++G+++A D +K+ I + A +G+ I T K
Sbjct: 266 TTHIAQLMNNKGKIIARDIHEHKLKLIDRTAKRLGIHIIQTEKF 309
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 427 DRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTC 483
D+VL+DAPCS LG+ +P + +E Q + + + Q ++ A Q V+ G +VYSTC
Sbjct: 323 DKVLVDAPCSGLGIIRRKPEIKYRKEA-QDITSIVELQYKILKTAAQYVKIEGTLVYSTC 381
Query: 484 TINPGENEALC 494
TINP EN+ +
Sbjct: 382 TINPEENDHIV 392
>gi|429505125|ref|YP_007186309.1| 16S rRNA methyltransferase B [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|429486715|gb|AFZ90639.1| 16S rRNA methyltransferase B [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
Length = 447
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 54/84 (64%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G + +Q+ S++ A ALDP+ GE +LD CAAPGGK+ IA L+ +EG + ++D +KV
Sbjct: 231 GGVSIQDESSMLVARALDPKPGETVLDACAAPGGKSAHIAELMENEGSLTSLDLHRHKVK 290
Query: 301 DIQKLAAEMGLKCITTYKLDALKA 324
I++ A +GL I +DA KA
Sbjct: 291 LIKEGAERLGLTIIDAQTMDARKA 314
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 421 FSPNSFDRVLLDAPCSALGL--RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGII 478
F FDRVL+DAPCS G+ R +T + R + Q + + LV+ GG +
Sbjct: 318 FGAERFDRVLVDAPCSGFGVIRRKPDMKYTKTPEDSRRLSEIQLGILREIAPLVKKGGTL 377
Query: 479 VYSTCTINPGENE 491
VYSTCT++ ENE
Sbjct: 378 VYSTCTMDRTENE 390
>gi|428279169|ref|YP_005560904.1| hypothetical protein BSNT_02587 [Bacillus subtilis subsp. natto
BEST195]
gi|291484126|dbj|BAI85201.1| hypothetical protein BSNT_02587 [Bacillus subtilis subsp. natto
BEST195]
Length = 447
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 55/84 (65%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
GE+ +Q+ S++ A ALDP+ E +LD CAAPGGK+ IA L++++G V ++D +KV
Sbjct: 231 GEVSIQDESSMLVARALDPKPDETVLDACAAPGGKSAHIAELMQNKGSVTSLDLHKHKVK 290
Query: 301 DIQKLAAEMGLKCITTYKLDALKA 324
I++ A +GL I +DA KA
Sbjct: 291 LIKEAADRLGLTIIHAETMDARKA 314
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F FDR+L+DAPCS G+ +P + ++ S R + Q + + LV+ GG
Sbjct: 318 FENEQFDRILVDAPCSGFGVIRRKPDMKYTKKPDDSAR-LAEIQLSILREIAPLVKKGGT 376
Query: 478 IVYSTCTINPGENE 491
+VYSTCT++ EN+
Sbjct: 377 LVYSTCTMDRTEND 390
>gi|258515525|ref|YP_003191747.1| sun protein [Desulfotomaculum acetoxidans DSM 771]
gi|257779230|gb|ACV63124.1| sun protein [Desulfotomaculum acetoxidans DSM 771]
Length = 452
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 61/105 (58%), Gaps = 3/105 (2%)
Query: 217 ASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKT 276
A EG+ V+ + P+F + G +Q+ SI+ HA+ P R++D CAAPGGKT
Sbjct: 214 APEGLNVEGFTSLRNFPAFRN---GLFQVQDESSILAGHAVKPAVNCRVIDACAAPGGKT 270
Query: 277 TAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
T +A L+ ++GE++A D +K+ I+ +G+KC+ LD+
Sbjct: 271 THLAQLMENKGEIIAADIYPHKLDLIEDNCQRLGIKCVKIINLDS 315
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 41/69 (59%), Gaps = 8/69 (11%)
Query: 427 DRVLLDAPCSALGL---RP--RLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYS 481
D VL+DAPCS LG+ RP R E I +L K QR + + A VRPGG++VYS
Sbjct: 327 DYVLVDAPCSGLGVLRRRPDARWRKEAEQIPAL---VKIQREILESAALCVRPGGVLVYS 383
Query: 482 TCTINPGEN 490
TCTI EN
Sbjct: 384 TCTITEEEN 392
>gi|375085444|ref|ZP_09732083.1| ribosomal RNA small subunit methyltransferase B [Megamonas
funiformis YIT 11815]
gi|374567314|gb|EHR38537.1| ribosomal RNA small subunit methyltransferase B [Megamonas
funiformis YIT 11815]
Length = 442
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 62/105 (59%), Gaps = 3/105 (2%)
Query: 217 ASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKT 276
A EGI H + QL + G +Q+ S++ AH +DP+ E I+D C+APGGKT
Sbjct: 209 APEGIICKTHTSLNQLAPLQN---GFAQVQDESSMLVAHVVDPKPNEFIIDTCSAPGGKT 265
Query: 277 TAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
T +A+L++++G+++A D +K+ IQ A +G+ I LDA
Sbjct: 266 THMATLMQNKGKIIACDIYEHKLKLIQDNANRLGINIIEPKLLDA 310
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 424 NSFDRVLLDAPCSALGLRPRLFAAE--ETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYS 481
N D+VL+DAPCS +G+ R + +T + Q + + A + V+P G++VYS
Sbjct: 319 NQADKVLVDAPCSGMGVLRRKPDSRWNKTAEIFEKLPPLQLAILESAARAVKPQGVLVYS 378
Query: 482 TCTINPGEN 490
TCTI P EN
Sbjct: 379 TCTIMPQEN 387
>gi|423511899|ref|ZP_17488430.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
HuA2-1]
gi|402450160|gb|EJV81994.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
HuA2-1]
Length = 444
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 62/96 (64%), Gaps = 1/96 (1%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G + +Q+ S++ A AL+P+KG+ +LD CAAPGGKTT IA L G+V+++D +KV
Sbjct: 227 KGFLSIQDESSMLVARALEPKKGDTVLDSCAAPGGKTTHIAERLDGTGKVMSLDLHAHKV 286
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRR-KNESNDE 334
I++ A +GL+ + T LDA K NES D+
Sbjct: 287 RLIEQQAKRLGLENVETMALDARKVQEHFANESFDK 322
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F+ SFD++L+DAPCS G+ +P + ++ S R Q + ++ L++ GG
Sbjct: 315 FANESFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSER-LSTIQLAILEKIAPLLKQGGR 373
Query: 478 IVYSTCTINPGENE 491
+VYSTCTI ENE
Sbjct: 374 LVYSTCTIEKIENE 387
>gi|425454955|ref|ZP_18834680.1| Ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa PCC 9807]
gi|389804235|emb|CCI16917.1| Ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa PCC 9807]
Length = 446
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 63/123 (51%), Gaps = 11/123 (8%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G LQ++ + + + LDPQ GE I+D CAAPGGKTT IA L+ D G ++A D++ +++
Sbjct: 234 GNYTLQDISAQLVTYLLDPQPGETIIDACAAPGGKTTHIAELMGDRGRILACDQTASRLR 293
Query: 301 DIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEV 360
++ + LK I + D S D P C D I + S LHK +
Sbjct: 294 QLEANIKRLDLKAIEIHLGD----------SRDRPQWCGIADRVLIDAPCSGLGTLHK-L 342
Query: 361 PSI 363
P I
Sbjct: 343 PDI 345
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 427 DRVLLDAPCSALGLRPRL--FAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCT 484
DRVL+DAPCS LG +L +T ++L K Q + A V+P GI+VY+TCT
Sbjct: 325 DRVLIDAPCSGLGTLHKLPDIRWRQTPENLPVLAKRQGELLASAATWVKPKGILVYATCT 384
Query: 485 INPGENE 491
+NP ENE
Sbjct: 385 LNPLENE 391
>gi|20093735|ref|NP_613582.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
gi|19886632|gb|AAM01512.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
Length = 449
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 49/82 (59%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
EG I Q+ + + L+PQ GERI D+CAAPGGKTT IA L DE E++AVD S ++
Sbjct: 227 EGHIVPQDEAAALVTEILNPQPGERIADLCAAPGGKTTHIAQLTEDEAEILAVDVSRVRL 286
Query: 300 MDIQKLAAEMGLKCITTYKLDA 321
+++ A M + I + D
Sbjct: 287 RRLERFAERMVFENIEVLRADV 308
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 61/118 (51%), Gaps = 18/118 (15%)
Query: 381 EKGVERTYVSKADT-RKNMRRMRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALG 439
E+ ER + R ++RR+ GRN G+ FDRVLLD PCS+LG
Sbjct: 290 ERFAERMVFENIEVLRADVRRL----GRNPRYVGK-----------FDRVLLDPPCSSLG 334
Query: 440 LRPRLFAAEETI--QSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEALCA 495
+ I + +R QR++ A +L++PGG++VYSTCTI P ENE + +
Sbjct: 335 TLRSDPDVKWKIGPRDIRELALKQRQLIRAAARLLKPGGVLVYSTCTITPEENELVVS 392
>gi|337750137|ref|YP_004644299.1| ribosomal RNA small subunit methyltransferase B [Paenibacillus
mucilaginosus KNP414]
gi|336301326|gb|AEI44429.1| ribosomal RNA small subunit methyltransferase B [Paenibacillus
mucilaginosus KNP414]
Length = 485
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 53/85 (62%)
Query: 237 DVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296
D EG +Q+ S++ A +DPQ GER+LD CAAPGGKTT +A ++ GE+VA D
Sbjct: 264 DYAEGLYSIQDESSMLVAEWVDPQPGERVLDCCAAPGGKTTHLAEKMQGRGEIVACDVHE 323
Query: 297 NKVMDIQKLAAEMGLKCITTYKLDA 321
+K I++ A +G + ITT DA
Sbjct: 324 HKHGLIREQADRLGHESITTLTADA 348
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 421 FSPNSFDRVLLDAPCSALGL--RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGII 478
++P SFDR+LLDAPCS LG+ R +T L + Q+ + + L++PGG++
Sbjct: 355 YAPESFDRILLDAPCSGLGVIRRKPDMKWTKTEAELGDICSIQQELLEAVHGLLKPGGVL 414
Query: 479 VYSTCTINPGEN 490
VYSTCT+ P EN
Sbjct: 415 VYSTCTVEPAEN 426
>gi|432108175|gb|ELK33095.1| Putative methyltransferase NSUN6 [Myotis davidii]
Length = 282
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 69/126 (54%), Gaps = 21/126 (16%)
Query: 125 EVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTV 184
E IV +C AVLRGA VYVPG+++ S ++ GDVV+V + +G
Sbjct: 20 EAIVGAQCGNAVLRGAHVYVPGIVSASKFMKAGDVVSVYSDI--------------KGKC 65
Query: 185 LQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRA---SEGIAVDMHNRIFQLPSFYDVLEG 241
+G++ F+ + +++G G + +SR GIF +GI + M +++ PSF +VL
Sbjct: 66 KKGAKE----FDGTKVFLGNGISELSRRGIFNGLPERKGIGIRMTEPVYRSPSFDNVLPS 121
Query: 242 EIFLQN 247
+FLQ+
Sbjct: 122 YLFLQD 127
>gi|425468533|ref|ZP_18847544.1| Ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa PCC 9701]
gi|389884794|emb|CCI34927.1| Ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa PCC 9701]
Length = 450
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 61/118 (51%), Gaps = 10/118 (8%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G LQ++ + + + LDPQ GE I+D CAAPGGKTT IA L+ D G+++A D++ +++
Sbjct: 234 GNYTLQDISAQLVTYLLDPQPGETIIDACAAPGGKTTHIAELMGDRGKILACDQTASRLR 293
Query: 301 DIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHK 358
++ + LK I + D S D P C D I + S LHK
Sbjct: 294 QLEANIKRLDLKAIEIHLGD----------SRDRPQWCGIADRVLIDAPCSGLGTLHK 341
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 427 DRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTC 483
DRVL+DAPCS LG RP + +T ++L K Q + A V+P GI+VY+TC
Sbjct: 325 DRVLIDAPCSGLGTLHKRPDI-RWRQTPENLPVLAKRQGELLASAATWVKPKGILVYATC 383
Query: 484 TINPGENE 491
T+NP ENE
Sbjct: 384 TLNPLENE 391
>gi|407706324|ref|YP_006829909.1| transition state regulatory protein AbrB [Bacillus thuringiensis
MC28]
gi|407384009|gb|AFU14510.1| sun protein [Bacillus thuringiensis MC28]
Length = 444
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 57/85 (67%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G + +Q+ S++ A AL+P +GE +LD CAAPGGKTT IA L+ G+V+++D +KV
Sbjct: 227 KGFLSIQDESSMLVARALEPNEGETVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKV 286
Query: 300 MDIQKLAAEMGLKCITTYKLDALKA 324
I++ A +GL+ I T LDA K
Sbjct: 287 RLIKQQAERLGLENIETKALDARKV 311
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F+ +FD++L+DAPCS G+ +P + ++ S R Q + ++ L++ GG
Sbjct: 315 FANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSER-LSTIQLAILEKIAPLLKQGGR 373
Query: 478 IVYSTCTINPGENE 491
+VYSTCTI ENE
Sbjct: 374 LVYSTCTIEKIENE 387
>gi|172035456|ref|YP_001801957.1| rRNA SAM-dependent methyltransferase [Cyanothece sp. ATCC 51142]
gi|354555546|ref|ZP_08974847.1| sun protein [Cyanothece sp. ATCC 51472]
gi|171696910|gb|ACB49891.1| Fmu, rRNA SAM-dependent methyltransferase [Cyanothece sp. ATCC
51142]
gi|353552605|gb|EHC22000.1| sun protein [Cyanothece sp. ATCC 51472]
Length = 452
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 67/128 (52%), Gaps = 13/128 (10%)
Query: 232 LPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVA 291
LP F+ +G +Q+ + + ++ LDPQ GE I+D CAAPGGKTT +A L+ D+G ++A
Sbjct: 235 LPGFH---QGHWTIQDSSAQLVSYLLDPQPGETIIDACAAPGGKTTHMAELMGDQGTIIA 291
Query: 292 VDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTS 351
DR+ +++ +Q+ A + L I T D S P + N+ D + S
Sbjct: 292 CDRTPSRLKKVQQNAQRLQLNSIQTILGD----------SRHLPQLINTADRVLVDVPCS 341
Query: 352 DSMKLHKE 359
LH+
Sbjct: 342 GLGTLHRH 349
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 424 NSFDRVLLDAPCSALGLRPRL--FAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYS 481
N+ DRVL+D PCS LG R +T + ++ + Q+ + QA Q V+P G +VY+
Sbjct: 329 NTADRVLVDVPCSGLGTLHRHPDIRWRQTPEKIQELSRLQQEILTQAAQWVKPQGTLVYA 388
Query: 482 TCTINPGENEAL 493
TCT+NP EN+ +
Sbjct: 389 TCTLNPTENQQI 400
>gi|434404680|ref|YP_007147565.1| ribosomal RNA small subunit methyltransferase RsmB [Cylindrospermum
stagnale PCC 7417]
gi|428258935|gb|AFZ24885.1| ribosomal RNA small subunit methyltransferase RsmB [Cylindrospermum
stagnale PCC 7417]
Length = 449
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 67/131 (51%), Gaps = 13/131 (9%)
Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
I LP F EG +Q+ + + +H LDPQ GE ++D+CAAPGGKTT IA L+ D G+
Sbjct: 225 IQNLPGFR---EGWWTVQDSSAQLVSHLLDPQPGEVVIDVCAAPGGKTTHIAELMGDNGK 281
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITS 348
V A DR+ +++ +Q+ A + L I D S + P N+ D I +
Sbjct: 282 VWACDRTPSRLRKLQQNAQRLNLHSIEICTGD----------SRNLPQFQNTADRVLIDA 331
Query: 349 QTSDSMKLHKE 359
S +H+
Sbjct: 332 PCSGLGTMHRH 342
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Query: 413 GRAENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAE--ETIQSLRNHGKYQRRMFDQAVQ 470
G + N F N+ DRVL+DAPCS LG R A +T +S+R Q +
Sbjct: 312 GDSRNLPQFQ-NTADRVLIDAPCSGLGTMHRHADARWRQTPESVRELSLLQTELLAHTST 370
Query: 471 LVRPGGIIVYSTCTINPGENEALCA 495
V+ GG++VY+TCT++P ENE + +
Sbjct: 371 FVKQGGVLVYATCTLHPAENEGVIS 395
>gi|442805500|ref|YP_007373649.1| ribosomal RNA small subunit methyltransferase B [Clostridium
stercorarium subsp. stercorarium DSM 8532]
gi|442741350|gb|AGC69039.1| ribosomal RNA small subunit methyltransferase B [Clostridium
stercorarium subsp. stercorarium DSM 8532]
Length = 449
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 54/83 (65%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G+I +Q+ S++ A LDP+ GE+ILD CAAPGGKTT I L+++ G + A D +K+
Sbjct: 232 KGKITVQDESSMIVARILDPKPGEKILDTCAAPGGKTTHIGQLMQNRGHIDAWDVHEHKI 291
Query: 300 MDIQKLAAEMGLKCITTYKLDAL 322
I + A +G++ I + DAL
Sbjct: 292 ALINENAKRLGVEIINASQQDAL 314
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Query: 426 FDRVLLDAPCSALGL--RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTC 483
+DRVL+DAPCS G+ R + + L N + Q+++ A + V+PGG++VYSTC
Sbjct: 324 YDRVLVDAPCSGTGIIRRKPDIKWKRKKEDLSNLVEIQKKILYNAGRYVKPGGVLVYSTC 383
Query: 484 TINPGENEALC 494
+++ ENE +
Sbjct: 384 SVDVRENEEVV 394
>gi|318040449|ref|ZP_07972405.1| sun protein [Synechococcus sp. CB0101]
Length = 454
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 65/123 (52%), Gaps = 9/123 (7%)
Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
+ +LP F EG +Q+ + A LDPQ GERILD CAAPGGK+T +A + D+G
Sbjct: 242 LSRLPGFG---EGHWCVQDRAAQRIAPLLDPQPGERILDACAAPGGKSTHLAEWMGDQGM 298
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITS 348
V+A+DR ++ + + A +GL+ I DA + ++P + S D + +
Sbjct: 299 VLALDRGEARLRRVSRNAERLGLRSIAVQHGDATAL------AQEQPELQGSFDRILVDA 352
Query: 349 QTS 351
S
Sbjct: 353 PCS 355
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 424 NSFDRVLLDAPCSALGLRPRLFAAEETIQ--SLRNHGKYQRRMFDQAVQLVRPGGIIVYS 481
SFDR+L+DAPCS LG R A I ++ QR++ + + L++P G +VY+
Sbjct: 343 GSFDRILVDAPCSGLGTLARHADARWRIDPAAIGELVVLQRQLLEGLLPLLKPKGRMVYA 402
Query: 482 TCTINPGENEAL 493
TCT++P EN AL
Sbjct: 403 TCTVHPSENSAL 414
>gi|448470216|ref|ZP_21600413.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum kocurii JCM
14978]
gi|445808294|gb|EMA58366.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum kocurii JCM
14978]
Length = 316
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 60/113 (53%), Gaps = 8/113 (7%)
Query: 217 ASEGIA---VDMHNRIFQLPS-----FYDVLEGEIFLQNLPSIVTAHALDPQKGERILDM 268
A EG+A VD H+ +F+LP + + G Q S++ ALDPQ GER+ D
Sbjct: 46 AEEGVAYEAVDWHDGLFRLPDGNPGGNWPYVHGWTHGQEEVSVLPGLALDPQPGERVWDA 105
Query: 269 CAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
CAAPG KTT IA + DEG VVA D + ++ ++ A +G+ DA
Sbjct: 106 CAAPGSKTTQIADAMGDEGTVVANDNNLGRLSALRHNAERLGITNAIVTNQDA 158
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 419 KGFSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPG 475
K + + FDR L+DAPCS G P + + T+ + Q+ + +AVQ RPG
Sbjct: 164 KPLAFDEFDRALVDAPCSCEGTCRKNPDVVD-QWTLDHVHAVAGIQKGILARAVQATRPG 222
Query: 476 GIIVYSTCTINPGENEAL 493
G +VYSTCT P ENEA+
Sbjct: 223 GTVVYSTCTFAPEENEAV 240
>gi|419823924|ref|ZP_14347457.1| 16S rRNA methyltransferase B [Bacillus atrophaeus C89]
gi|388471961|gb|EIM08751.1| 16S rRNA methyltransferase B [Bacillus atrophaeus C89]
Length = 447
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 55/84 (65%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G++ +Q+ S++ A AL P+ GE ILD CAAPGGK+T IA + +EG V+++D +KV
Sbjct: 231 GDVSIQDESSMLVARALGPEAGETILDACAAPGGKSTHIAERMGNEGSVLSLDLHEHKVK 290
Query: 301 DIQKLAAEMGLKCITTYKLDALKA 324
I++ A +GL I +DA KA
Sbjct: 291 LIKEAANRLGLTIIKPEAMDARKA 314
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Query: 418 SKGFSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRP 474
S+ F + FDR+L+DAPCS G+ +P + ++ S R K Q + + LV+
Sbjct: 315 SEAFQDDEFDRILVDAPCSGFGVIRRKPDMKYSKNPEDSAR-LAKIQLSILREIAPLVKK 373
Query: 475 GGIIVYSTCTINPGENE 491
GG +VYSTCT++ ENE
Sbjct: 374 GGTLVYSTCTMDRTENE 390
>gi|311068095|ref|YP_003973018.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Bacillus atrophaeus
1942]
gi|310868612|gb|ADP32087.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Bacillus atrophaeus
1942]
Length = 447
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 55/84 (65%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G++ +Q+ S++ A AL P+ GE ILD CAAPGGK+T IA + +EG V+++D +KV
Sbjct: 231 GDVSIQDESSMLVARALGPEAGETILDACAAPGGKSTHIAERMGNEGSVLSLDLHEHKVK 290
Query: 301 DIQKLAAEMGLKCITTYKLDALKA 324
I++ A +GL I +DA KA
Sbjct: 291 LIKEAANRLGLTIIKPEAMDARKA 314
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Query: 418 SKGFSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRP 474
S+ F + FDR+L+DAPCS G+ +P + ++ S R K Q + + LV+
Sbjct: 315 SEAFQDDEFDRILVDAPCSGFGVIRRKPDMKYSKNPEDSAR-LAKIQLSILREIAPLVKK 373
Query: 475 GGIIVYSTCTINPGENE 491
GG +VYSTCT++ ENE
Sbjct: 374 GGTLVYSTCTMDRTENE 390
>gi|392957476|ref|ZP_10322999.1| 16S rRNA methyltransferase B [Bacillus macauensis ZFHKF-1]
gi|391876439|gb|EIT85036.1| 16S rRNA methyltransferase B [Bacillus macauensis ZFHKF-1]
Length = 457
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 54/85 (63%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G + +Q+ S++ A L P++ E ILD CAAPGGKTT IA LL + G VVA+D +KV
Sbjct: 230 QGYVTIQDESSMLVARGLGPKESETILDACAAPGGKTTHIAELLNNSGSVVALDLHKHKV 289
Query: 300 MDIQKLAAEMGLKCITTYKLDALKA 324
I++ A + L I T +D+ KA
Sbjct: 290 KLIEEQAKRLHLTNIETKAMDSRKA 314
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 8/79 (10%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAA--EETIQSLRNHGKYQRRMFDQAVQLVRPG 475
F P SFDR+L+DAPC+ G+ +P L + EE I + Q + + L++PG
Sbjct: 318 FPPASFDRILVDAPCTGFGVIRKKPDLKWSKKEEDIHRI---STIQMEILNSVATLLKPG 374
Query: 476 GIIVYSTCTINPGENEALC 494
G +VYSTCT++ EN+ +
Sbjct: 375 GTLVYSTCTVDHEENQEVA 393
>gi|14590913|ref|NP_142986.1| fmu protein [Pyrococcus horikoshii OT3]
gi|3257494|dbj|BAA30177.1| 450aa long hypothetical fmu protein [Pyrococcus horikoshii OT3]
Length = 450
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 53/75 (70%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G +Q+L S AH L+P+ GER+LD+ AAPG KT A+L+ + GE+VAVD S++++
Sbjct: 240 KGYFVIQDLASAYVAHVLNPEPGERVLDLAAAPGSKTFHAAALMENRGEIVAVDYSYDRL 299
Query: 300 MDIQKLAAEMGLKCI 314
+ +++ ++G+K +
Sbjct: 300 IKMRERMKKLGVKNV 314
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 12/74 (16%)
Query: 425 SFDRVLLDAPCSALG-------LRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
FD+++LDAPCS+ G ++ R EE I+ + + QR M A + + GG
Sbjct: 329 KFDKIILDAPCSSSGTYRQFPEVKWRF--NEEKIKRVIS---VQRNMLINAYRNLAGGGE 383
Query: 478 IVYSTCTINPGENE 491
+ YSTC+I ENE
Sbjct: 384 MTYSTCSIRIDENE 397
>gi|159905923|ref|YP_001549585.1| RNA methylase [Methanococcus maripaludis C6]
gi|159887416|gb|ABX02353.1| RNA methylase, NOL1/NOP2/sun family [Methanococcus maripaludis C6]
Length = 275
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 54/83 (65%)
Query: 230 FQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEV 289
F + S + L G FLQ++ SI+ + L+P K + +LDMCAAPGGKTT +A L+ +EG +
Sbjct: 56 FSMGSTPEYLLGYYFLQSISSIIPSVTLNPTKDDNLLDMCAAPGGKTTHLAQLMENEGSI 115
Query: 290 VAVDRSHNKVMDIQKLAAEMGLK 312
+AV+ + N++ ++ MG K
Sbjct: 116 LAVEINKNRLKSLRSNINRMGFK 138
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 426 FDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTI 485
FD++LLDAPC+ G + +T + + K Q +F A+++++ GG +VYSTC+
Sbjct: 156 FDKILLDAPCT--GNEIKDCNRVKTKRDILFCAKRQVELFRTAIEVLKDGGEMVYSTCSP 213
Query: 486 NPGENEAL 493
E+E +
Sbjct: 214 EIEEDEDI 221
>gi|390440194|ref|ZP_10228542.1| Ribosomal RNA small subunit methyltransferase B [Microcystis sp.
T1-4]
gi|389836395|emb|CCI32668.1| Ribosomal RNA small subunit methyltransferase B [Microcystis sp.
T1-4]
Length = 446
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 60/118 (50%), Gaps = 10/118 (8%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G LQ++ + + + LDPQ GE I+D CAAPGGKTT IA L+ D G ++A D++ +++
Sbjct: 234 GNYTLQDISAQLVTYLLDPQPGETIIDACAAPGGKTTHIAELMGDRGRILACDQTASRLR 293
Query: 301 DIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHK 358
++ + LK I + D S D P C D I + S LHK
Sbjct: 294 QLEANIKRLDLKAIEIHLGD----------SRDRPQWCGIADRVLIDAPCSGLGTLHK 341
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 427 DRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTC 483
DRVL+DAPCS LG RP + +T ++L K Q + A V+P GI+VY+TC
Sbjct: 325 DRVLIDAPCSGLGTLHKRPDI-RWRQTPENLPVLAKRQGELLASAATWVKPKGILVYATC 383
Query: 484 TINPGENE 491
T++P ENE
Sbjct: 384 TLDPLENE 391
>gi|443328422|ref|ZP_21057020.1| ribosomal RNA small subunit methyltransferase RsmB [Xenococcus sp.
PCC 7305]
gi|442792007|gb|ELS01496.1| ribosomal RNA small subunit methyltransferase RsmB [Xenococcus sp.
PCC 7305]
Length = 480
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 51/86 (59%), Gaps = 3/86 (3%)
Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
I QLP + EG +Q+ + + H LDPQ GE I+D CAAPGGKTT IA LL D G
Sbjct: 253 IDQLPGYR---EGWWTVQDGSAQLVTHFLDPQPGESIIDACAAPGGKTTHIAELLGDRGT 309
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKCI 314
+ A DRS ++ ++ AA + L I
Sbjct: 310 IWACDRSKKRLQKVRANAARLQLNSI 335
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 423 PNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIV 479
P DR+LLD PCS LG RP + +T + + Q+ + A V+P G++V
Sbjct: 350 PRQCDRLLLDVPCSGLGTLHKRPDI-RWRQTPEKILQLSLLQQELLSAAATRVKPQGVLV 408
Query: 480 YSTCTINPGENE 491
Y+TC+IN ENE
Sbjct: 409 YATCSINSQENE 420
>gi|75910625|ref|YP_324921.1| rRNA SAM-dependent methyltransferase [Anabaena variabilis ATCC
29413]
gi|75704350|gb|ABA24026.1| Fmu, rRNA SAM-dependent methyltransferase [Anabaena variabilis ATCC
29413]
Length = 449
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 56/86 (65%), Gaps = 3/86 (3%)
Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
I +LP F +G +Q+ + + +H LDPQ GE I+D CAAPGGKTT IA L++D+G+
Sbjct: 225 IQKLPGFS---QGWWVVQDASAQLVSHLLDPQPGEVIIDACAAPGGKTTHIAELMKDQGK 281
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKCI 314
V A DR+ +++ +++ A + L I
Sbjct: 282 VWAGDRTASRLRKLKENAQRLNLHSI 307
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 424 NSFDRVLLDAPCSALGLRPRLFAAE--ETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYS 481
N DRVLLDAPCS LG R A +T +S++ Q+ + + V+ GG++VY+
Sbjct: 322 NVADRVLLDAPCSGLGTLHRHADARWRQTPESVQELSTLQQELLSHTSKFVKVGGVLVYA 381
Query: 482 TCTINPGENE 491
TCT++P ENE
Sbjct: 382 TCTLHPAENE 391
>gi|425445544|ref|ZP_18825572.1| Ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa PCC 9443]
gi|389734455|emb|CCI01900.1| Ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa PCC 9443]
Length = 446
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 60/118 (50%), Gaps = 10/118 (8%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G LQ++ + + + LDPQ GE I+D CAAPGGKTT IA L+ D G ++A D++ +++
Sbjct: 234 GNYTLQDISAQLVTYLLDPQPGETIIDACAAPGGKTTHIAELMGDRGRILACDQTASRLR 293
Query: 301 DIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHK 358
++ + LK I + D S D P C D I + S LHK
Sbjct: 294 QLEANIKRLDLKAIEIHLGD----------SRDRPQWCGIADRVLIDAPCSGLGTLHK 341
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 427 DRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTC 483
DRVL+DAPCS LG RP + +T ++L K Q + A V+P GI+VY+TC
Sbjct: 325 DRVLIDAPCSGLGTLHKRPDI-RWRQTPENLPVLAKRQGELLASAATWVKPKGILVYATC 383
Query: 484 TINPGENE 491
T+NP ENE
Sbjct: 384 TLNPLENE 391
>gi|229061468|ref|ZP_04198813.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AH603]
gi|229134673|ref|ZP_04263482.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BDRD-ST196]
gi|229168605|ref|ZP_04296328.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AH621]
gi|228615011|gb|EEK72113.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AH621]
gi|228648719|gb|EEL04745.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BDRD-ST196]
gi|228717891|gb|EEL69539.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AH603]
Length = 415
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 61/96 (63%), Gaps = 1/96 (1%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G + +Q+ S++ A AL+P KG+ +LD CAAPGGKTT IA L G+V+++D +KV
Sbjct: 198 KGFLSIQDESSMLVARALEPNKGDTVLDSCAAPGGKTTHIAERLDGTGKVMSLDLHAHKV 257
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRR-KNESNDE 334
I++ A +GL+ + T LDA K NES D+
Sbjct: 258 RLIEQQAKRLGLENVETMALDARKVQEHFANESFDK 293
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F+ SFD++L+DAPCS G+ +P + ++ S R Q + ++ L++ GG
Sbjct: 286 FANESFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSER-LSTIQLAILEKIAPLLKQGGR 344
Query: 478 IVYSTCTINPGENE 491
+VYSTCTI ENE
Sbjct: 345 LVYSTCTIEKIENE 358
>gi|229013049|ref|ZP_04170214.1| Ribosomal RNA small subunit methyltransferase B [Bacillus mycoides
DSM 2048]
gi|228748303|gb|EEL98163.1| Ribosomal RNA small subunit methyltransferase B [Bacillus mycoides
DSM 2048]
Length = 415
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 61/96 (63%), Gaps = 1/96 (1%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G + +Q+ S++ A AL+P KG+ +LD CAAPGGKTT IA L G+V+++D +KV
Sbjct: 198 KGFLSIQDESSMLVARALEPNKGDTVLDSCAAPGGKTTHIAERLDGTGKVMSLDLHAHKV 257
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRR-KNESNDE 334
I++ A +GL+ + T LDA K NES D+
Sbjct: 258 RLIEQQAKRLGLENVETMALDARKVQEHFANESFDK 293
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F+ SFD++L+DAPCS G+ +P + ++ S R Q + ++ L++ GG
Sbjct: 286 FANESFDKILVDAPCSGSGVIRRKPDIKLGKDKGDSER-LSTIQLAILEKIAPLLKQGGR 344
Query: 478 IVYSTCTINPGENE 491
+VYSTCTI ENE
Sbjct: 345 LVYSTCTIEKIENE 358
>gi|86609413|ref|YP_478175.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86557955|gb|ABD02912.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 457
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 55/94 (58%), Gaps = 3/94 (3%)
Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
I LP F +G +Q+ + H LDPQ GER++D CAAPGGKTT IA ++D GE
Sbjct: 232 ITALPGFA---QGWWSVQDASAQQVVHWLDPQPGERVIDCCAAPGGKTTQIAQHMQDRGE 288
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322
+ A+DR +++ +++ +GL I +D L
Sbjct: 289 IWALDRHPHRLRRLEENRQRLGLSSIRPLAIDLL 322
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 424 NSFDRVLLDAPCSALGLRPRLFAAE--ETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYS 481
S DRVLLDAPCS LG R A +T + + Q ++ A + ++PGG++VY+
Sbjct: 346 QSADRVLLDAPCSGLGTLHRHADARWRQTPERIPELAHLQAQLLQVAARWLKPGGVLVYA 405
Query: 482 TCTINPGENE 491
TCT++P ENE
Sbjct: 406 TCTLHPAENE 415
>gi|228902369|ref|ZP_04066525.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis IBL 4222]
gi|228857267|gb|EEN01771.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis IBL 4222]
Length = 429
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 62/96 (64%), Gaps = 1/96 (1%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G + +Q+ S++ A AL+P +GE +LD CAAPGGKTT IA L+ G+V+++D +KV
Sbjct: 212 KGFLSIQDESSMLVARALEPNEGETVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKV 271
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRR-KNESNDE 334
I++ A +GL+ + T LDA K NE+ D+
Sbjct: 272 RLIKQQAERLGLENVETKALDARKVQEHFSNETFDK 307
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
FS +FD++L+DAPCS G+ +P + ++ S R Q + ++ L++ GG
Sbjct: 300 FSNETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSER-LSTIQLAILEKIAPLLKQGGR 358
Query: 478 IVYSTCTINPGENE 491
+VYSTCTI ENE
Sbjct: 359 LVYSTCTIEKIENE 372
>gi|229031495|ref|ZP_04187495.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AH1271]
gi|228729784|gb|EEL80764.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AH1271]
Length = 402
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 62/96 (64%), Gaps = 1/96 (1%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G + +Q+ S++ A ALDP +G+ +LD CAAPGGKTT IA L+ G+V+++D +KV
Sbjct: 185 KGFLSIQDESSMLVARALDPNEGDVVLDSCAAPGGKTTHIAERLKGTGQVMSLDLHAHKV 244
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRR-KNESNDE 334
I++ A +GL+ + T LDA K NE+ D+
Sbjct: 245 RLIKQQAERLGLENVETKALDARKVQEHFANETFDK 280
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 10/77 (12%)
Query: 421 FSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQR------RMFDQAVQLVRP 474
F+ +FD++L+DAPCS G+ R + I+ +N G +R + ++ L++
Sbjct: 273 FANETFDKILVDAPCSGFGVIRR----KPDIKLGKNKGDSERLSTIQLAILEKIAPLLKQ 328
Query: 475 GGIIVYSTCTINPGENE 491
GG +VYSTCTI ENE
Sbjct: 329 GGRLVYSTCTIEKIENE 345
>gi|434398098|ref|YP_007132102.1| sun protein [Stanieria cyanosphaera PCC 7437]
gi|428269195|gb|AFZ35136.1| sun protein [Stanieria cyanosphaera PCC 7437]
Length = 453
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 53/87 (60%), Gaps = 3/87 (3%)
Query: 228 RIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEG 287
+I QLP + G +Q+ + + H LDPQ GE I+D CAAPGGKTT IA L++D+G
Sbjct: 228 KINQLPGYE---AGWWMVQDSSAQLVTHLLDPQPGETIVDACAAPGGKTTHIAELIKDQG 284
Query: 288 EVVAVDRSHNKVMDIQKLAAEMGLKCI 314
+ A D S ++ +Q+ A + LK I
Sbjct: 285 VIYACDLSEKRLNKVQENAQRLQLKSI 311
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 46/70 (65%), Gaps = 4/70 (5%)
Query: 427 DRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTC 483
DRVLLDAPCS LG RP + +T+ + + Q+++ +QA V+PGGIIVY+TC
Sbjct: 332 DRVLLDAPCSGLGTLHKRPDI-RWRQTLTKIGELSQLQQQLLNQAATWVKPGGIIVYATC 390
Query: 484 TINPGENEAL 493
T+N ENE +
Sbjct: 391 TLNRLENEVV 400
>gi|423518555|ref|ZP_17495036.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
HuA2-4]
gi|401160763|gb|EJQ68138.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
HuA2-4]
Length = 444
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 61/96 (63%), Gaps = 1/96 (1%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G + +Q+ S++ A AL+P KG+ +LD CAAPGGKTT IA L G+V+++D +KV
Sbjct: 227 KGFLSIQDESSMLVARALEPNKGDTVLDSCAAPGGKTTHIAERLDGTGKVMSLDLHAHKV 286
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRR-KNESNDE 334
I++ A +GL+ + T LDA K NES D+
Sbjct: 287 RLIEQQAKRLGLENVETMALDARKVQEHFANESFDK 322
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 10/77 (12%)
Query: 421 FSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQR------RMFDQAVQLVRP 474
F+ SFD++L+DAPCS G+ R + I+ + G +R + ++ L++
Sbjct: 315 FANESFDKILVDAPCSGFGVIRR----KPDIKLGKGKGDSERLSTIQLAILEKIAPLLKQ 370
Query: 475 GGIIVYSTCTINPGENE 491
GG +VYSTCTI ENE
Sbjct: 371 GGRLVYSTCTIEKIENE 387
>gi|228966815|ref|ZP_04127859.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis serovar sotto str. T04001]
gi|228792914|gb|EEM40472.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis serovar sotto str. T04001]
Length = 429
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 62/96 (64%), Gaps = 1/96 (1%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G + +Q+ S++ A AL+P +GE +LD CAAPGGKTT IA L+ G+V+++D +KV
Sbjct: 212 KGFLSIQDESSMLVARALEPNEGETVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKV 271
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRR-KNESNDE 334
I++ A +GL+ + T LDA K NE+ D+
Sbjct: 272 RLIKQQAERLGLENVETKALDARKVQEHFSNETFDK 307
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
FS +FD++L+DAPCS G+ +P + ++ S R Q + ++ L++ GG
Sbjct: 300 FSNETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSER-LSTIQLAILEKIAPLLKQGGR 358
Query: 478 IVYSTCTINPGENE 491
+VYSTCTI ENE
Sbjct: 359 LVYSTCTIEKIENE 372
>gi|425464664|ref|ZP_18843974.1| Ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa PCC 9809]
gi|389833279|emb|CCI22350.1| Ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa PCC 9809]
Length = 450
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 60/118 (50%), Gaps = 10/118 (8%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G LQ++ + + + LDPQ GE I+D CAAPGGKTT IA L+ D G ++A D++ +++
Sbjct: 234 GNYTLQDISAQLVTYLLDPQPGETIIDACAAPGGKTTHIAELMGDRGRILACDQTASRLR 293
Query: 301 DIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHK 358
++ + LK I + D S D P C D I + S LHK
Sbjct: 294 QLEANIKRLDLKAIEIHLGD----------SRDRPQWCGIADRVLIDAPCSGLGTLHK 341
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 427 DRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTC 483
DRVL+DAPCS LG RP + +T ++L K Q + A V+P GI+VY+TC
Sbjct: 325 DRVLIDAPCSGLGTLHKRPDI-RWRQTPENLPVLAKRQGELLASAATWVKPKGILVYATC 383
Query: 484 TINPGENE 491
T++P ENE
Sbjct: 384 TLDPLENE 391
>gi|75762655|ref|ZP_00742497.1| 16S rRNA m(5)C 967 methyltransferase [Bacillus thuringiensis
serovar israelensis ATCC 35646]
gi|74489854|gb|EAO53228.1| 16S rRNA m(5)C 967 methyltransferase [Bacillus thuringiensis
serovar israelensis ATCC 35646]
Length = 368
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 62/96 (64%), Gaps = 1/96 (1%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G + +Q+ S++ A AL+P +GE +LD CAAPGGKTT IA L+ G+V+++D +KV
Sbjct: 151 KGFLSIQDESSMLVARALEPNEGETVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKV 210
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRR-KNESNDE 334
I++ A +GL+ + T LDA K NE+ D+
Sbjct: 211 RLIKQQAERLGLENVETKALDARKVQEHFSNETFDK 246
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
FS +FD++L+DAPCS G+ +P + ++ S R Q + ++ L++ GG
Sbjct: 239 FSNETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSER-LSTIQLAILEKIAPLLKQGGR 297
Query: 478 IVYSTCTINPGENE 491
+VYSTCTI ENE
Sbjct: 298 LVYSTCTIEKIENE 311
>gi|218899018|ref|YP_002447429.1| sun protein [Bacillus cereus G9842]
gi|402564793|ref|YP_006607517.1| 16S rRNA methyltransferase B [Bacillus thuringiensis HD-771]
gi|423359099|ref|ZP_17336602.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD022]
gi|423561729|ref|ZP_17538005.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
MSX-A1]
gi|218546015|gb|ACK98409.1| sun protein [Bacillus cereus G9842]
gi|401084971|gb|EJP93217.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD022]
gi|401201986|gb|EJR08851.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
MSX-A1]
gi|401793445|gb|AFQ19484.1| 16S rRNA methyltransferase B [Bacillus thuringiensis HD-771]
Length = 444
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 62/96 (64%), Gaps = 1/96 (1%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G + +Q+ S++ A AL+P +GE +LD CAAPGGKTT IA L+ G+V+++D +KV
Sbjct: 227 KGFLSIQDESSMLVARALEPNEGETVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKV 286
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRR-KNESNDE 334
I++ A +GL+ + T LDA K NE+ D+
Sbjct: 287 RLIKQQAERLGLENVETKALDARKVQEHFSNETFDK 322
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
FS +FD++L+DAPCS G+ +P + ++ S R Q + ++ L++ GG
Sbjct: 315 FSNETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSER-LSTIQLAILEKIAPLLKQGGR 373
Query: 478 IVYSTCTINPGENE 491
+VYSTCTI ENE
Sbjct: 374 LVYSTCTIEKIENE 387
>gi|260887300|ref|ZP_05898563.1| ribosomal RNA small subunit methyltransferase B [Selenomonas
sputigena ATCC 35185]
gi|330838946|ref|YP_004413526.1| sun protein [Selenomonas sputigena ATCC 35185]
gi|260862936|gb|EEX77436.1| ribosomal RNA small subunit methyltransferase B [Selenomonas
sputigena ATCC 35185]
gi|329746710|gb|AEC00067.1| sun protein [Selenomonas sputigena ATCC 35185]
Length = 443
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 63/109 (57%), Gaps = 3/109 (2%)
Query: 219 EGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTA 278
EGI H + L S +G +Q+ S++ AH L P+ GE +LD+C+APGGKTT
Sbjct: 214 EGILFLRHGSLDALESLQ---QGLFQVQDESSMLVAHVLAPEPGEFVLDVCSAPGGKTTH 270
Query: 279 IASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRR 327
IA+ + D G +VA+D +K+ I + +G+K + LDA +A RR
Sbjct: 271 IAASMGDCGRIVALDVHEHKMRRIAENCERLGIKSVEPLLLDAREAGRR 319
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAE--ETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
P DRVL+DAPCS LG+ R A + L + QR + A + V+ GG++VY
Sbjct: 321 PRQADRVLVDAPCSGLGVLRRKPDARWRKRPDDLAALARLQREILSSAAEAVKSGGVLVY 380
Query: 481 STCTINPGENEAL 493
STCTI ENEA+
Sbjct: 381 STCTIEREENEAV 393
>gi|163941603|ref|YP_001646487.1| sun protein [Bacillus weihenstephanensis KBAB4]
gi|423489041|ref|ZP_17465723.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BtB2-4]
gi|423494766|ref|ZP_17471410.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
CER057]
gi|423498442|ref|ZP_17475059.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
CER074]
gi|423592139|ref|ZP_17568170.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD048]
gi|423598824|ref|ZP_17574824.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD078]
gi|423661295|ref|ZP_17636464.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VDM022]
gi|423669439|ref|ZP_17644468.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VDM034]
gi|423674382|ref|ZP_17649321.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VDM062]
gi|163863800|gb|ABY44859.1| sun protein [Bacillus weihenstephanensis KBAB4]
gi|401150859|gb|EJQ58311.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
CER057]
gi|401160491|gb|EJQ67869.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
CER074]
gi|401232272|gb|EJR38774.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD048]
gi|401237094|gb|EJR43551.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD078]
gi|401298566|gb|EJS04166.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VDM034]
gi|401301336|gb|EJS06925.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VDM022]
gi|401309933|gb|EJS15266.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VDM062]
gi|402432289|gb|EJV64348.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BtB2-4]
Length = 444
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 61/96 (63%), Gaps = 1/96 (1%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G + +Q+ S++ A AL+P KG+ +LD CAAPGGKTT IA L G+V+++D +KV
Sbjct: 227 KGFLSIQDESSMLVARALEPNKGDTVLDSCAAPGGKTTHIAERLDGTGKVMSLDLHAHKV 286
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRR-KNESNDE 334
I++ A +GL+ + T LDA K NES D+
Sbjct: 287 RLIEQQAKRLGLENVETMALDARKVQEHFANESFDK 322
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F+ SFD++L+DAPCS G+ +P + ++ S R Q + ++ L++ GG
Sbjct: 315 FANESFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSER-LSTIQLAILEKIAPLLKQGGR 373
Query: 478 IVYSTCTINPGENE 491
+VYSTCTI ENE
Sbjct: 374 LVYSTCTIEKIENE 387
>gi|434376969|ref|YP_006611613.1| 16S rRNA methyltransferase B [Bacillus thuringiensis HD-789]
gi|401875526|gb|AFQ27693.1| 16S rRNA methyltransferase B [Bacillus thuringiensis HD-789]
Length = 444
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 62/96 (64%), Gaps = 1/96 (1%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G + +Q+ S++ A AL+P +GE +LD CAAPGGKTT IA L+ G+V+++D +KV
Sbjct: 227 KGFLSIQDESSMLVARALEPNEGETVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKV 286
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRR-KNESNDE 334
I++ A +GL+ + T LDA K NE+ D+
Sbjct: 287 RLIKQQAERLGLENVETKALDARKVQEHFSNETFDK 322
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
FS +FD++L+DAPCS G+ +P + ++ S R Q + ++ L++ GG
Sbjct: 315 FSNETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSER-LSTIQLAILEKIAPLLKQGGR 373
Query: 478 IVYSTCTINPGENE 491
+VYSTCTI ENE
Sbjct: 374 LVYSTCTIEKIENE 387
>gi|425460298|ref|ZP_18839779.1| Ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa PCC 9808]
gi|389827038|emb|CCI22011.1| Ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa PCC 9808]
Length = 446
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 60/118 (50%), Gaps = 10/118 (8%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G LQ++ + + + LDPQ GE I+D CAAPGGKTT IA L+ D G ++A D++ +++
Sbjct: 234 GNYTLQDISAQLVTYLLDPQPGETIIDACAAPGGKTTHIAELMGDRGRILACDQTPSRLR 293
Query: 301 DIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHK 358
++ + LK I + D S D P C D I + S LHK
Sbjct: 294 QLEANIKRLDLKAIEIHLGD----------SRDRPQWCGIADRVLIDAPCSGLGTLHK 341
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 427 DRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTC 483
DRVL+DAPCS LG RP + +T ++L K Q + A V+P GI+VY+TC
Sbjct: 325 DRVLIDAPCSGLGTLHKRPDI-RWRQTPENLPVLAKRQGELLASAATWVKPKGILVYATC 383
Query: 484 TINPGENE 491
T+NP ENE
Sbjct: 384 TLNPLENE 391
>gi|423612082|ref|ZP_17587943.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD107]
gi|401247089|gb|EJR53433.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD107]
Length = 444
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 61/96 (63%), Gaps = 1/96 (1%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G + +Q+ S++ A AL+P KG+ +LD CAAPGGKTT IA L G+V+++D +KV
Sbjct: 227 KGFLSIQDESSMLVARALEPNKGDAVLDSCAAPGGKTTHIAERLDGTGKVMSLDLHAHKV 286
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRR-KNESNDE 334
I++ A +GL+ + T LDA K NES D+
Sbjct: 287 RLIEQQAKRLGLENVETMALDARKVQEHFANESFDK 322
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F+ SFD++L+DAPCS G+ +P + ++ S R Q + ++ L++ GG
Sbjct: 315 FANESFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSER-LSTIQLAILEKIAPLLKQGGR 373
Query: 478 IVYSTCTINPGENE 491
+VYSTCTI ENE
Sbjct: 374 LVYSTCTIEKIENE 387
>gi|269797911|ref|YP_003311811.1| sun protein [Veillonella parvula DSM 2008]
gi|269094540|gb|ACZ24531.1| sun protein [Veillonella parvula DSM 2008]
Length = 451
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 52/79 (65%)
Query: 238 VLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHN 297
VL+G I + S++ AH +DPQ GERILD CAAPGGK+ +ASL+ + G +++ D +
Sbjct: 238 VLDGHITFMDKASMLVAHVVDPQPGERILDCCAAPGGKSMHMASLMNNTGAIMSCDIYDH 297
Query: 298 KVMDIQKLAAEMGLKCITT 316
K+ I + A +G+ I+T
Sbjct: 298 KLELINQNAERLGVSIIST 316
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 45/70 (64%), Gaps = 2/70 (2%)
Query: 426 FDRVLLDAPCSALG-LRPRLFAAEETIQSLR-NHGKYQRRMFDQAVQLVRPGGIIVYSTC 483
FDRVL+DAPCS LG L+ +L +SL Q + ++A ++V+ G +VYSTC
Sbjct: 332 FDRVLVDAPCSGLGILQKKLDMRWRKTESLLIELPPLQLEILEKASKMVKVNGYLVYSTC 391
Query: 484 TINPGENEAL 493
T+N GENEA+
Sbjct: 392 TMNSGENEAV 401
>gi|440755727|ref|ZP_20934929.1| ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa TAIHU98]
gi|440175933|gb|ELP55302.1| ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa TAIHU98]
Length = 450
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 60/118 (50%), Gaps = 10/118 (8%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G LQ++ + + + LDPQ GE I+D CAAPGGKTT IA L+ D G ++A D++ +++
Sbjct: 234 GNYTLQDISAQLVTYLLDPQPGETIIDACAAPGGKTTHIAELMGDRGRILACDQTPSRLR 293
Query: 301 DIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHK 358
++ + LK I + D S D P C D I + S LHK
Sbjct: 294 QLEANIKRLDLKAIEIHLGD----------SRDRPQWCGIADRVLIDAPCSGLGTLHK 341
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 427 DRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTC 483
DRVL+DAPCS LG RP + +T ++L K Q + A V+P GI+VY+TC
Sbjct: 325 DRVLIDAPCSGLGTLHKRPDI-RWRQTPENLPVLAKRQGELLASAATWVKPKGILVYATC 383
Query: 484 TINPGENE 491
T++P ENE
Sbjct: 384 TLDPLENE 391
>gi|228909690|ref|ZP_04073513.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis IBL 200]
gi|228849979|gb|EEM94810.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis IBL 200]
Length = 429
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 62/96 (64%), Gaps = 1/96 (1%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G + +Q+ S++ A AL+P +GE +LD CAAPGGKTT IA L+ G+V+++D +KV
Sbjct: 212 KGFLSIQDESSMLVARALEPNEGEAVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKV 271
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRR-KNESNDE 334
I++ A +GL+ + T LDA K NE+ D+
Sbjct: 272 RLIKQQAERLGLENVETKALDARKVQEHFSNETFDK 307
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
FS +FD++L+DAPCS G+ +P + ++ S R Q + ++ L++ GG
Sbjct: 300 FSNETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSER-LSTIQLAILEKIAPLLKQGGR 358
Query: 478 IVYSTCTINPGENE 491
+VYSTCTI ENE
Sbjct: 359 LVYSTCTIEKIENE 372
>gi|423522305|ref|ZP_17498778.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
HuA4-10]
gi|401174999|gb|EJQ82202.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
HuA4-10]
Length = 444
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 61/96 (63%), Gaps = 1/96 (1%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G + +Q+ S++ A AL+P KG+ +LD CAAPGGKTT IA L G+V+++D +KV
Sbjct: 227 KGFLSIQDESSMLVARALEPNKGDAVLDSCAAPGGKTTHIAERLDGTGKVMSLDLHAHKV 286
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRR-KNESNDE 334
I++ A +GL+ + T LDA K NES D+
Sbjct: 287 RLIEQQAKRLGLENVETMALDARKVQEHFANESFDK 322
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F+ SFD++L+DAPCS G+ +P + ++ S R Q + ++ L++ GG
Sbjct: 315 FANESFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSER-LSTIQLAILEKIAPLLKQGGR 373
Query: 478 IVYSTCTINPGENE 491
+VYSTCTI ENE
Sbjct: 374 LVYSTCTIEKIENE 387
>gi|423558572|ref|ZP_17534874.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
MC67]
gi|401191840|gb|EJQ98862.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
MC67]
Length = 444
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 61/96 (63%), Gaps = 1/96 (1%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G + +Q+ S++ A AL+P KG+ +LD CAAPGGKTT IA L G+V+++D +KV
Sbjct: 227 KGFLSIQDESSMLVARALEPNKGDAVLDSCAAPGGKTTHIAERLDGTGKVMSLDLHAHKV 286
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRR-KNESNDE 334
I++ A +GL+ + T LDA K NES D+
Sbjct: 287 RLIEQQAKRLGLENVETMALDARKVQEHFANESFDK 322
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F+ SFD++L+DAPCS G+ +P + ++ S R Q + ++ L++ GG
Sbjct: 315 FANESFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSER-LSTIQLAILEKIAPLLKQGGR 373
Query: 478 IVYSTCTINPGENE 491
+VYSTCTI ENE
Sbjct: 374 LVYSTCTIEKIENE 387
>gi|423367909|ref|ZP_17345341.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD142]
gi|423470079|ref|ZP_17446823.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG6O-2]
gi|401082770|gb|EJP91035.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD142]
gi|402437331|gb|EJV69355.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG6O-2]
Length = 444
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 61/96 (63%), Gaps = 1/96 (1%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G + +Q+ S++ A AL+P KG+ +LD CAAPGGKTT IA L G+V+++D +KV
Sbjct: 227 KGFLSIQDESSMLVARALEPNKGDAVLDSCAAPGGKTTHIAERLDGTGKVMSLDLHAHKV 286
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRR-KNESNDE 334
I++ A +GL+ + T LDA K NES D+
Sbjct: 287 RLIEQQAKRLGLENVETMALDARKVQEHFANESFDK 322
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F+ SFD++L+DAPCS G+ +P + ++ S R Q + ++ L++ GG
Sbjct: 315 FANESFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSER-LSTIQLAILEKIAPLLKQGGR 373
Query: 478 IVYSTCTINPGENE 491
+VYSTCTI ENE
Sbjct: 374 LVYSTCTIEKIENE 387
>gi|423483455|ref|ZP_17460145.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG6X1-2]
gi|401141006|gb|EJQ48561.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG6X1-2]
Length = 444
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 60/95 (63%), Gaps = 1/95 (1%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G + +Q+ S++ A AL+P KG+ +LD CAAPGGKTT IA L G+V+++D +KV
Sbjct: 228 GFLSIQDESSMLVARALEPNKGDAVLDSCAAPGGKTTHIAERLDGTGKVMSLDLHAHKVR 287
Query: 301 DIQKLAAEMGLKCITTYKLDALKAVRR-KNESNDE 334
I++ A +GL+ + T LDA K NES D+
Sbjct: 288 LIEQQAKRLGLENVETMALDARKVQEHFANESFDK 322
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F+ SFD++L+DAPCS G+ +P + ++ S R Q + ++ L++ GG
Sbjct: 315 FANESFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSER-LSTIQLAILEKIAPLLKQGGR 373
Query: 478 IVYSTCTINPGENE 491
+VYSTCTI ENE
Sbjct: 374 LVYSTCTIEKIENE 387
>gi|389852328|ref|YP_006354562.1| nol1-nop2-sun family nucleolar protein II [Pyrococcus sp. ST04]
gi|388249634|gb|AFK22487.1| nol1-nop2-sun family nucleolar protein II [Pyrococcus sp. ST04]
Length = 432
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 52/75 (69%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G +Q+L S AH L P+ G+R+LD+ AAPG KT A+L+ ++GE+VAVD S++++
Sbjct: 223 KGYFVIQDLASAYVAHVLSPEPGDRVLDLAAAPGSKTFHAAALMENKGEIVAVDYSYDRL 282
Query: 300 MDIQKLAAEMGLKCI 314
M +++ +G+K +
Sbjct: 283 MKMKERMKRLGVKNV 297
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 6/111 (5%)
Query: 383 GVERTYVSKADTRKNMRRMRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGLRP 442
V+ +Y ++ M+R+ G A+ F FD+++LDAPCS+ G
Sbjct: 274 AVDYSYDRLMKMKERMKRL----GVKNVRLVHADGQSFFDKEKFDKIILDAPCSSSGTYR 329
Query: 443 RLFAAEETI--QSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENE 491
+ + + +R QR M A++ +R GG + YSTC++ ENE
Sbjct: 330 QFPEVKWRFDEKKIRRVINVQRNMLLNAMRNLREGGEMTYSTCSVRIDENE 380
>gi|410460745|ref|ZP_11314418.1| 16S rRNA methyltransferase B [Bacillus azotoformans LMG 9581]
gi|409926675|gb|EKN63831.1| 16S rRNA methyltransferase B [Bacillus azotoformans LMG 9581]
Length = 446
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 55/82 (67%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
EG + +Q+ S++ A AL PQKG+++LD CAAPGGKTT IA LL ++G+V++VD +KV
Sbjct: 229 EGYVTIQDESSMLVARALGPQKGDKVLDSCAAPGGKTTHIAELLGNDGKVISVDLHPHKV 288
Query: 300 MDIQKLAAEMGLKCITTYKLDA 321
I++ + L + T D+
Sbjct: 289 KLIEEQVKRLKLTNVETLVSDS 310
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 421 FSPNSFDRVLLDAPCSALGL--RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGII 478
F+ FDR+L+DAPCS G+ R + + + Q + + L++ GG +
Sbjct: 317 FNSEEFDRILVDAPCSGFGVIRRKPDIKYSKKLDDIGQLAAIQLSILNSVAPLLKNGGTL 376
Query: 479 VYSTCTINPGENEALC 494
VYSTCTI+ EN A+
Sbjct: 377 VYSTCTIDQEENAAVA 392
>gi|427414320|ref|ZP_18904510.1| ribosomal RNA small subunit methyltransferase B [Veillonella ratti
ACS-216-V-Col6b]
gi|425714696|gb|EKU77699.1| ribosomal RNA small subunit methyltransferase B [Veillonella ratti
ACS-216-V-Col6b]
Length = 449
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 48/73 (65%), Gaps = 2/73 (2%)
Query: 424 NSFDRVLLDAPCSALGLRPRLFAA--EETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYS 481
N FD+VL+DAPCS LG+ R +T +SL K Q+++ + A + V+PGG++VYS
Sbjct: 328 NQFDKVLVDAPCSGLGILQRKLDMRWHKTPESLTELPKLQQQIIETAAKTVKPGGVLVYS 387
Query: 482 TCTINPGENEALC 494
TCTIN ENE +
Sbjct: 388 TCTINRAENEGVV 400
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 62/113 (54%), Gaps = 3/113 (2%)
Query: 202 IGQGTAMMSRAGIFRASEGI---AVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALD 258
+ G + + +AG + G AV + + L S V G I + S+ A+ +D
Sbjct: 197 VADGMSALEKAGWLAEATGKLPEAVHITHHTGSLESAPIVKAGLITFTDEASMAVAYVVD 256
Query: 259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL 311
P+ GE++LD CAAPGGKT +A+ + +EG++VA D +K+ ++ A +G+
Sbjct: 257 PKPGEKVLDCCAAPGGKTMHLAARMNNEGQIVADDIHEHKLGLMEANAKRLGV 309
>gi|375082408|ref|ZP_09729468.1| tRNA/RNA cytosine-C5-methylase [Thermococcus litoralis DSM 5473]
gi|374742901|gb|EHR79279.1| tRNA/RNA cytosine-C5-methylase [Thermococcus litoralis DSM 5473]
Length = 450
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 54/87 (62%), Gaps = 6/87 (6%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
EG +Q+L S AH L P+KGER+LD+ AAPG KT +A L+ + G++VAVD S +
Sbjct: 240 EGYFVIQDLASAYVAHVLAPEKGERVLDLAAAPGSKTFHVAHLMENTGKIVAVDYSAER- 298
Query: 300 MDIQKLAAEM---GLKCITTYKLDALK 323
+QK+ A+M G+K + D +K
Sbjct: 299 --LQKMKAKMKVLGVKNVKLVHADGMK 323
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 8/100 (8%)
Query: 400 RMRNGPGRNQCLGGR------AENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETI-- 451
R++ + + LG + A+ K FD+++LDAPCS+ G + +
Sbjct: 298 RLQKMKAKMKVLGVKNVKLVHADGMKFKDKEPFDKIILDAPCSSSGTYRQFPEVKWRFDE 357
Query: 452 QSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENE 491
+ ++ + Q+ M A + +R GG + YSTC+I ENE
Sbjct: 358 KKIKKVIQVQKAMIRNAYKNLREGGEMTYSTCSIRVDENE 397
>gi|157412841|ref|YP_001483707.1| Sun protein [Prochlorococcus marinus str. MIT 9215]
gi|157387416|gb|ABV50121.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9215]
Length = 438
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 59/110 (53%), Gaps = 12/110 (10%)
Query: 221 IAVDMHN---------RIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAA 271
I D+HN I LP + D G +Q+ S A L+P++GE+ILD CAA
Sbjct: 210 IIKDLHNGITLKSNPRSIKNLPGYSD---GLWTIQDRSSQWIAPLLNPKEGEKILDACAA 266
Query: 272 PGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
PG K+T +A L D E++AVDRS ++ +Q + LK + T K DA
Sbjct: 267 PGSKSTHLAELTNDSAEILAVDRSEKRLKILQSNLVRLNLKSVNTLKADA 316
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 8/74 (10%)
Query: 426 FDRVLLDAPCSALGLRPR-----LFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
FD++LLDAPCS +G R ++E I+SL Q ++ ++ L++ GI+VY
Sbjct: 330 FDKILLDAPCSGIGTLSRNPDSRWSLSKEKIKSL---TLLQEKLLEKIFPLLKKDGIMVY 386
Query: 481 STCTINPGENEALC 494
STCTI P EN L
Sbjct: 387 STCTICPDENNLLI 400
>gi|402815959|ref|ZP_10865551.1| ribosomal RNA small subunit methyltransferase B [Paenibacillus
alvei DSM 29]
gi|402506999|gb|EJW17522.1| ribosomal RNA small subunit methyltransferase B [Paenibacillus
alvei DSM 29]
Length = 465
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 51/81 (62%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
GE+ +Q+ S++ AL P+ G R+LD CAAPGGKTT IA + ++GEVVA D +KV
Sbjct: 243 GELSVQDESSMLVVEALRPEAGMRVLDCCAAPGGKTTHIAERMGNKGEVVANDVHAHKVA 302
Query: 301 DIQKLAAEMGLKCITTYKLDA 321
I A +GL + T +DA
Sbjct: 303 LIADQAERLGLTSVATMNVDA 323
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 45/72 (62%), Gaps = 8/72 (11%)
Query: 425 SFDRVLLDAPCSALGL---RPRLFAAE--ETIQSLRNHGKYQRRMFDQAVQLVRPGGIIV 479
SFD VLLDAPC+ G+ +P + A+ E + S+ Q + DQA QLVRPGG +V
Sbjct: 334 SFDAVLLDAPCTGFGVIRRKPDIKWAKRPEDVASI---ASLQAELLDQAAQLVRPGGRLV 390
Query: 480 YSTCTINPGENE 491
YSTCT+ ENE
Sbjct: 391 YSTCTVERAENE 402
>gi|443310715|ref|ZP_21040357.1| ribosomal RNA small subunit methyltransferase RsmB [Synechocystis
sp. PCC 7509]
gi|442779240|gb|ELR89491.1| ribosomal RNA small subunit methyltransferase RsmB [Synechocystis
sp. PCC 7509]
Length = 446
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 53/86 (61%), Gaps = 3/86 (3%)
Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
I LP F D G +Q+ + + +H LDPQ GE I+D CAAPGGKTT IA L+ D+G
Sbjct: 225 IQNLPGFND---GWWTVQDSSAQLVSHLLDPQSGEFIIDACAAPGGKTTHIAELMGDQGT 281
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKCI 314
+ A DR+ +++ +Q+ + LK I
Sbjct: 282 IWACDRTASRLRKLQQNTKRLQLKSI 307
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 427 DRVLLDAPCSALGLRPRLFAAE--ETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCT 484
DR+LLD PCS LG R A +T QS++ Q + Q V+PGG++VYSTCT
Sbjct: 325 DRLLLDVPCSGLGTLNRHADARWRQTPQSIQELSLLQAELISQGALFVKPGGVMVYSTCT 384
Query: 485 INPGENEALCA 495
++P ENE + A
Sbjct: 385 LHPQENENIIA 395
>gi|332710036|ref|ZP_08429991.1| ribosomal RNA small subunit methyltransferase RsmB [Moorea
producens 3L]
gi|332351179|gb|EGJ30764.1| ribosomal RNA small subunit methyltransferase RsmB [Moorea
producens 3L]
Length = 477
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 69/130 (53%), Gaps = 13/130 (10%)
Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
I +LP F EG +Q+ + + ++ LDPQ G+ ++D CAAPGGKTT IA L+ D+G+
Sbjct: 257 IQELPGFK---EGWWTVQDCSAQLVSYLLDPQPGDVVIDACAAPGGKTTHIAELMADQGK 313
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITS 348
+ A DRS +++ +Q+ A + L+ I D S D P N + + +
Sbjct: 314 IWACDRSASRLKKVQQNAQRLELQSIQISTGD----------SRDCPEFTNVANAVLLDA 363
Query: 349 QTSDSMKLHK 358
S + LH+
Sbjct: 364 PCSGNGTLHR 373
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 43/75 (57%), Gaps = 8/75 (10%)
Query: 424 NSFDRVLLDAPCSALGL---RP--RLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGII 478
N + VLLDAPCS G RP R E +Q L Q+ + + V+PGG++
Sbjct: 354 NVANAVLLDAPCSGNGTLHRRPDIRWRMTPEKVQELT---VLQKELLEHTATWVKPGGVL 410
Query: 479 VYSTCTINPGENEAL 493
VY+TCT+NP ENEA+
Sbjct: 411 VYATCTLNPQENEAV 425
>gi|229025307|ref|ZP_04181726.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AH1272]
gi|228735998|gb|EEL86574.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AH1272]
Length = 387
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 87/166 (52%), Gaps = 19/166 (11%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G + +Q+ S++ A AL+P +G+ +LD CAAPGGKTT IA L+ G+V+++D +KV
Sbjct: 170 KGFLSIQDESSMLVARALEPNEGDEVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKV 229
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRR-KNESND----------------EPNMCNSKD 342
I++ A +GL+ + T LDA K +NE+ D +P++ KD
Sbjct: 230 RLIRQQADRLGLENVETKALDARKVQEHFENETFDKILVDAPCSGFGVIRRKPDIKLGKD 289
Query: 343 NNYITSQTSDSMKLHKEVPSIAAEG--LNGDKSCKEKVSNEKGVER 386
++ + +++ + +G L EK+ NE+ +ER
Sbjct: 290 KGDSERLSTIQFAILEKIAPLLKQGGRLVYSTCTIEKIENEQVIER 335
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F +FD++L+DAPCS G+ +P + ++ S R Q + ++ L++ GG
Sbjct: 258 FENETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSER-LSTIQFAILEKIAPLLKQGGR 316
Query: 478 IVYSTCTINPGENE 491
+VYSTCTI ENE
Sbjct: 317 LVYSTCTIEKIENE 330
>gi|116073315|ref|ZP_01470577.1| Fmu, rRNA SAM-dependent methyltransferase [Synechococcus sp.
RS9916]
gi|116068620|gb|EAU74372.1| Fmu, rRNA SAM-dependent methyltransferase [Synechococcus sp.
RS9916]
Length = 456
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 60/109 (55%), Gaps = 4/109 (3%)
Query: 207 AMMSRAGIFRASEGIAVDMHN-RIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERI 265
A ++ I +G+ V H + Q P + D G +Q+ + A L PQ G+R+
Sbjct: 222 AGLTVVAIPECPDGLQVLSHGGDLRQWPGYDD---GHWCVQDRAAQWVAPLLAPQPGDRV 278
Query: 266 LDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCI 314
LD CAAPGGK T +A L+ D+GEV A+DRS ++ + AA +G C+
Sbjct: 279 LDACAAPGGKATHLAELMGDQGEVWAIDRSAGRLQRVAANAARLGTNCL 327
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 425 SFDRVLLDAPCSALGLRPRLFAAEETI--QSLRNHGKYQRRMFDQAVQLVRPGGIIVYST 482
SF R+LLDAPCS LG R A + +S+ Q R+ + + L+ PGG +VY+T
Sbjct: 347 SFQRILLDAPCSGLGTLARHADARWRVSAKSVAELVPLQARLLEGMLPLLSPGGSLVYAT 406
Query: 483 CTINPGEN 490
CTI+P EN
Sbjct: 407 CTIHPAEN 414
>gi|423452834|ref|ZP_17429687.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG5X1-1]
gi|401139393|gb|EJQ46955.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG5X1-1]
Length = 444
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 61/96 (63%), Gaps = 1/96 (1%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G + +Q+ S++ A AL+P KG+ +LD CAAPGGKTT IA L G+V+++D +KV
Sbjct: 227 KGFLSIQDESSMLVARALEPNKGDAVLDSCAAPGGKTTHIAERLDGTGKVMSLDLHVHKV 286
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRR-KNESNDE 334
I++ A +GL+ + T LDA K NES D+
Sbjct: 287 RLIEQQAKRLGLENVETMALDARKVQEHFANESFDK 322
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F+ SFD++L+DAPCS G+ +P + ++ S R Q + ++ L++ GG
Sbjct: 315 FANESFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSER-LSTIQLAILEKIAPLLKQGGR 373
Query: 478 IVYSTCTINPGENE 491
+VYSTCTI ENE
Sbjct: 374 LVYSTCTIEKIENE 387
>gi|126695788|ref|YP_001090674.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9301]
gi|126542831|gb|ABO17073.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9301]
Length = 438
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 59/110 (53%), Gaps = 12/110 (10%)
Query: 221 IAVDMHN---------RIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAA 271
I D+HN I LP + D G +Q+ S A L+P++GE+ILD CAA
Sbjct: 210 IIKDLHNGITLKSNPRSIKNLPGYSD---GLWTIQDRSSQWIAPLLNPKQGEKILDACAA 266
Query: 272 PGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
PG K+T +A L D E++AVDRS ++ +Q + LK + T K DA
Sbjct: 267 PGSKSTHLAELTNDSSEIIAVDRSAKRLKILQSNLERLNLKSVNTLKADA 316
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 41/73 (56%), Gaps = 8/73 (10%)
Query: 426 FDRVLLDAPCSALGL-----RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
FD++LLDAPCS +G R ++E I+SL Q ++ D L++ G +VY
Sbjct: 330 FDKILLDAPCSGIGTLSRNPDSRWSLSKEKIKSL---TLLQEKLLDSIFPLLKKDGTLVY 386
Query: 481 STCTINPGENEAL 493
STCTI P EN L
Sbjct: 387 STCTICPDENNLL 399
>gi|123968018|ref|YP_001008876.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. AS9601]
gi|123198128|gb|ABM69769.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. AS9601]
Length = 438
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 62/109 (56%), Gaps = 4/109 (3%)
Query: 218 SEGIAVDMHNR-IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKT 276
+ GI + + R I LP + D G +Q+ S A L+P++GE+ILD CAAPG K+
Sbjct: 215 NNGITLKSNPRSIKNLPGYSD---GLWTIQDRSSQWIAPLLNPKEGEKILDACAAPGSKS 271
Query: 277 TAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAV 325
T +A L D E++AVDRS ++ +Q + LK + T K DA + +
Sbjct: 272 THLAELTNDSAEIIAVDRSAKRLKILQSNLERLNLKSVNTLKADATRLI 320
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 8/73 (10%)
Query: 426 FDRVLLDAPCSALGLRPR-----LFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
FD++LLDAPCS +G R ++E I+SL Q ++ + + L++ G +VY
Sbjct: 330 FDKILLDAPCSGIGTLSRNPDSRWSLSKEKIKSL---TLLQGKLLESILPLLKKDGTLVY 386
Query: 481 STCTINPGENEAL 493
STCTI P EN L
Sbjct: 387 STCTICPDENNLL 399
>gi|423401293|ref|ZP_17378466.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG2X1-2]
gi|423457952|ref|ZP_17434749.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG5X2-1]
gi|423478003|ref|ZP_17454718.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG6X1-1]
gi|401148336|gb|EJQ55829.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG5X2-1]
gi|401654283|gb|EJS71826.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG2X1-2]
gi|402428165|gb|EJV60262.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG6X1-1]
Length = 444
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 57/85 (67%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G + +Q+ S++ A AL+P +G+ +LD CAAPGGKTT IA L+ G+V+++D +KV
Sbjct: 227 KGFLSIQDESSMLVARALEPNEGDEVLDSCAAPGGKTTHIAERLKGTGQVMSLDLHAHKV 286
Query: 300 MDIQKLAAEMGLKCITTYKLDALKA 324
I++ A +GL+ + T LDA K
Sbjct: 287 RLIKQQAERLGLENVETKALDARKV 311
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 10/77 (12%)
Query: 421 FSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQR------RMFDQAVQLVRP 474
F+ +FD++L+DAPCS G+ R + I+ +N G +R + ++ L++
Sbjct: 315 FANETFDKILVDAPCSGFGVIRR----KPDIKLGKNKGDSERLSTIQLAILEKIAPLLKQ 370
Query: 475 GGIIVYSTCTINPGENE 491
GG +VYSTCTI ENE
Sbjct: 371 GGRLVYSTCTIEKIENE 387
>gi|169831743|ref|YP_001717725.1| sun protein [Candidatus Desulforudis audaxviator MP104C]
gi|169638587|gb|ACA60093.1| sun protein [Candidatus Desulforudis audaxviator MP104C]
Length = 452
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 62/105 (59%), Gaps = 3/105 (2%)
Query: 217 ASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKT 276
A EG+ + + LPSF +G +Q+ S++ AHA++P +G RILD C+APGGKT
Sbjct: 214 APEGLEIGGFVSMRALPSFQ---QGLFQIQDESSMLVAHAVNPARGVRILDACSAPGGKT 270
Query: 277 TAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
T +A L+ +EG + A+D +K+ + +G+ + T LDA
Sbjct: 271 THLAQLMENEGIIKALDIHQHKLKLVSDNCRRLGIDNVETELLDA 315
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 427 DRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTC 483
D VL+DAPCS LG+ RP +E Q + + Q + A Q VR GG++VYSTC
Sbjct: 327 DFVLVDAPCSGLGVLRRRPDARWRKEPGQ-ITGLVRLQEAILAGAAQCVRAGGVLVYSTC 385
Query: 484 TINPGEN 490
TI EN
Sbjct: 386 TITYEEN 392
>gi|357012410|ref|ZP_09077409.1| 16S rRNA methyltransferase B [Paenibacillus elgii B69]
Length = 494
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 51/85 (60%)
Query: 237 DVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296
D G +Q+ S++ A +DPQ GER+LD CAAPGGKTT +A + D GE+VA D
Sbjct: 275 DYAAGLYSVQDESSMLVAEWVDPQPGERVLDCCAAPGGKTTHLAEKMGDRGEIVACDVHE 334
Query: 297 NKVMDIQKLAAEMGLKCITTYKLDA 321
+K I++ A + L+ I T DA
Sbjct: 335 HKRKLIEEQAERLALRSIRTLTADA 359
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 49/77 (63%), Gaps = 4/77 (5%)
Query: 418 SKGFSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRP 474
++ F+P SFDR+LLDAPCS LG+ +P + ++ + L QR + + L++P
Sbjct: 363 AEHFAPESFDRILLDAPCSGLGVIRRKPDMKWSKSEAE-LAEICDIQRELLEAVHPLLKP 421
Query: 475 GGIIVYSTCTINPGENE 491
GGI+VYSTCT+ ENE
Sbjct: 422 GGILVYSTCTVEKAENE 438
>gi|440803888|gb|ELR24771.1| NOL1/NOP2/sun family putative RNA methylase subfamily protein
[Acanthamoeba castellanii str. Neff]
Length = 689
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Query: 239 LEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNK 298
L G+ LQ+ S + ALDPQ GER+LDMCAAPGGKTT IA ++++ G + + D+ +
Sbjct: 370 LTGQYMLQSASSFIPVLALDPQPGERVLDMCAAPGGKTTYIAQMMKNTGVLFSNDKHSER 429
Query: 299 VMDIQKLAAEMGLK--CITTY 317
V + MG++ IT Y
Sbjct: 430 VRAVVANVHRMGIRNTVITNY 450
Score = 39.3 bits (90), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Query: 426 FDRVLLDAPCSALGL--RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLV------RPGGI 477
FDR+LLDAPC+ G+ + ++ + + Q+ + A+ V G +
Sbjct: 462 FDRILLDAPCTGSGVISKDPSVKTQKDERDVHRMSHIQKELILAAIDSVDMKGHSSGGAV 521
Query: 478 IVYSTCTINPGENEAL 493
IVYSTC+I ENE +
Sbjct: 522 IVYSTCSILIEENEVV 537
>gi|78778810|ref|YP_396922.1| sun protein [Prochlorococcus marinus str. MIT 9312]
gi|78712309|gb|ABB49486.1| sun protein [Prochlorococcus marinus str. MIT 9312]
Length = 438
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 59/110 (53%), Gaps = 12/110 (10%)
Query: 221 IAVDMHN---------RIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAA 271
I D+HN I LP + D G +Q+ S A L+P++GE+ILD CAA
Sbjct: 210 IIKDLHNGITLKSNPRSIKNLPGYSD---GLWTIQDRSSQWIAPLLNPKEGEKILDACAA 266
Query: 272 PGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
PG K+T +A L D E++AVDRS ++ +Q + LK + T K DA
Sbjct: 267 PGSKSTHLAELTNDSAEIIAVDRSAKRLKILQSNLERLNLKSVNTLKADA 316
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 8/73 (10%)
Query: 426 FDRVLLDAPCSALGLRPR-----LFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
FD++LLDAPCS +G R ++E I+SL Q ++ + L++ G +VY
Sbjct: 330 FDKILLDAPCSGIGTLSRNPDSRWSLSKEKIKSL---TLLQEKLLESIFPLLKKEGTLVY 386
Query: 481 STCTINPGENEAL 493
STCTI P EN L
Sbjct: 387 STCTICPDENNLL 399
>gi|229174531|ref|ZP_04302063.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
MM3]
gi|228609091|gb|EEK66381.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
MM3]
Length = 402
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 62/96 (64%), Gaps = 1/96 (1%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G + +Q+ S++ A AL+P +G+ +LD CAAPGGKTT IA L+ G+V+++D +KV
Sbjct: 185 KGFLSIQDESSMLVARALEPNEGDEVLDSCAAPGGKTTHIAERLKGTGQVMSLDLHAHKV 244
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRR-KNESNDE 334
I++ A +GL+ + T LDA K NE+ D+
Sbjct: 245 RLIKQQAERLGLENVETKALDARKVQEHFANETFDK 280
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 10/77 (12%)
Query: 421 FSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQR------RMFDQAVQLVRP 474
F+ +FD++L+DAPCS G+ R + I+ +N G +R + ++ L++
Sbjct: 273 FANETFDKILVDAPCSGFGVIRR----KPDIKLGKNKGDSERLSTIQLAILEKIAPLLKQ 328
Query: 475 GGIIVYSTCTINPGENE 491
GG +VYSTCTI ENE
Sbjct: 329 GGRLVYSTCTIEKIENE 345
>gi|423389828|ref|ZP_17367054.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG1X1-3]
gi|423418228|ref|ZP_17395317.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG3X2-1]
gi|401106501|gb|EJQ14462.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG3X2-1]
gi|401641919|gb|EJS59636.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG1X1-3]
Length = 444
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 87/166 (52%), Gaps = 19/166 (11%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G + +Q+ S++ A AL+P +G+ +LD CAAPGGKTT IA L+ G+V+++D +KV
Sbjct: 227 KGFLSIQDESSMLVARALEPNEGDEVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKV 286
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRR-KNESND----------------EPNMCNSKD 342
I++ A +GL+ + T LDA K +NE+ D +P++ KD
Sbjct: 287 RLIRQQADRLGLENVETKALDARKVQEHFENETFDKILVDAPCSGFGVIRRKPDIKLGKD 346
Query: 343 NNYITSQTSDSMKLHKEVPSIAAEG--LNGDKSCKEKVSNEKGVER 386
++ + +++ + +G L EK+ NE+ +ER
Sbjct: 347 KGDSERLSTIQFAILEKIAPLLKQGGRLVYSTCTIEKIENEQVIER 392
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F +FD++L+DAPCS G+ +P + ++ S R Q + ++ L++ GG
Sbjct: 315 FENETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSER-LSTIQFAILEKIAPLLKQGGR 373
Query: 478 IVYSTCTINPGENE 491
+VYSTCTI ENE
Sbjct: 374 LVYSTCTIEKIENE 387
>gi|409095981|ref|ZP_11216005.1| tRNA/RNA cytosine-C5-methylase [Thermococcus zilligii AN1]
Length = 451
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 52/75 (69%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G+ +Q+L S AH L P+ GER+LD+ AAPG KT A+L+ + GE+VAVD S++++
Sbjct: 240 QGKFVIQDLASAYVAHVLAPEPGERVLDLAAAPGSKTFHAAALMENRGEIVAVDYSYDRL 299
Query: 300 MDIQKLAAEMGLKCI 314
M +++ +G++ +
Sbjct: 300 MRMKEKMKLLGIENV 314
Score = 44.7 bits (104), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 8/71 (11%)
Query: 426 FDRVLLDAPCSALGL-----RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
FD+++LDAPCS+ G + EE I + + QR M A + +R GG + Y
Sbjct: 330 FDKIILDAPCSSSGTYRQFPEVKWHFNEEKIGRIIS---VQRNMLRNAYENLRDGGEMTY 386
Query: 481 STCTINPGENE 491
STC+I ENE
Sbjct: 387 STCSIRIDENE 397
>gi|229019063|ref|ZP_04175901.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AH1273]
gi|228742231|gb|EEL92393.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AH1273]
Length = 369
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 63/96 (65%), Gaps = 1/96 (1%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G + +Q+ S++ A AL+P +G+ +LD CAAPGGKTT IA L+ G+V+++D +KV
Sbjct: 152 KGFLSIQDESSMLVARALEPNEGDEVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKV 211
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRR-KNESNDE 334
I++ A +GL+ + T LDA K +NE+ D+
Sbjct: 212 RLIRQQADRLGLENVETKALDARKVQEHFENETFDK 247
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F +FD++L+DAPCS G+ +P + ++ S R Q + ++ L++ GG
Sbjct: 240 FENETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSER-LSTIQFAILEKIAPLLKQGGR 298
Query: 478 IVYSTCTINPGENE 491
+VYSTCTI ENE
Sbjct: 299 LVYSTCTIEKIENE 312
>gi|47569491|ref|ZP_00240171.1| sun protein [Bacillus cereus G9241]
gi|47553820|gb|EAL12191.1| sun protein [Bacillus cereus G9241]
Length = 444
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 87/166 (52%), Gaps = 19/166 (11%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G + +Q+ S++ A AL+P +G+ +LD CAAPGGKTT IA L+ G+V+++D +KV
Sbjct: 227 KGFLSIQDESSMLVARALEPDEGDVVLDSCAAPGGKTTHIAERLKGTGQVMSLDLHAHKV 286
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRR-KNESND----------------EPNMCNSKD 342
I++ A +GL+ + T LDA K NE+ D +P++ KD
Sbjct: 287 RLIKQQAERLGLENVETKALDARKVQEHFANETFDKILVDAPCSGFGVIRRKPDIKLGKD 346
Query: 343 NNYITSQTSDSMKLHKEVPSIAAEG--LNGDKSCKEKVSNEKGVER 386
++ + + +++ + +G L EK+ NE+ +ER
Sbjct: 347 KGDSERLSTIQLAILEKIAPLLKQGGRLVYSTCTIEKIENEQVIER 392
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F+ +FD++L+DAPCS G+ +P + ++ S R Q + ++ L++ GG
Sbjct: 315 FANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSER-LSTIQLAILEKIAPLLKQGGR 373
Query: 478 IVYSTCTINPGENE 491
+VYSTCTI ENE
Sbjct: 374 LVYSTCTIEKIENE 387
>gi|418323824|ref|ZP_12935086.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
pettenkoferi VCU012]
gi|365229170|gb|EHM70333.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
pettenkoferi VCU012]
Length = 437
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 49/82 (59%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
EG I +Q+ S+ AH LDPQ G+ ILD C+APGGK I LLR G+V A D +K+
Sbjct: 229 EGLISIQDKSSMFVAHYLDPQIGDHILDACSAPGGKACHIGELLRGTGQVTATDIHQHKI 288
Query: 300 MDIQKLAAEMGLKCITTYKLDA 321
IQ+ ++GL + + DA
Sbjct: 289 ALIQENIHKLGLSHVKAMQHDA 310
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 426 FDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYST 482
+DR+L+DAPCS LG+ +P + ++ + Q + + ++PGG +VYST
Sbjct: 318 YDRILVDAPCSGLGVLRHKPEI-KYTQSWDDIHQLVDLQLEILENVKHQLKPGGTLVYST 376
Query: 483 CTINPGENE 491
CTI ENE
Sbjct: 377 CTIEQLENE 385
>gi|357617082|gb|EHJ70573.1| putative williams-beuren syndrome critical region protein [Danaus
plexippus]
Length = 638
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 54/95 (56%), Gaps = 3/95 (3%)
Query: 235 FYD---VLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVA 291
F+D L +I LQ+ + + H L P G +LDMCAAPG KTT +A+ LR++G+V A
Sbjct: 198 FHDHDLYLNNQIILQDKATALAVHLLAPPSGSTVLDMCAAPGMKTTQVAAYLRNQGKVYA 257
Query: 292 VDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVR 326
V+R+ + + +L KC+ T D L+ R
Sbjct: 258 VERNDQRYQTLCQLVESTSSKCVETIHKDVLEIKR 292
>gi|149173494|ref|ZP_01852124.1| sun protein [Planctomyces maris DSM 8797]
gi|148847676|gb|EDL62009.1| sun protein [Planctomyces maris DSM 8797]
Length = 477
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 78/149 (52%), Gaps = 10/149 (6%)
Query: 179 ITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFR--ASEGIAV---DMHNRI-FQL 232
+TR +V Q Q ++ +R+ LY+ R + +EGI V D I +
Sbjct: 212 LTRFSVQQTMQMAQWFNQRNNLYLRINALQTGREQLLEELQAEGIQVSPGDEPQAIRLEE 271
Query: 233 PSFYDVL----EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
P + L G+ +Q+ ++ + L+PQ E + DMCAAPG KTT +A L+ + G
Sbjct: 272 PVAMENLVGFSAGKFTIQDQSAMAAGNLLNPQPEETVWDMCAAPGTKTTHLAELMYNRGT 331
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKCITTY 317
++A D S +++ I++ A+ +GL CI T+
Sbjct: 332 LIATDVSCDRLEKIEQNASRLGLTCIETH 360
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 4/76 (5%)
Query: 421 FSPNSFDRVLLDAPCS---ALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
+S FD +L+DAPCS LG RP + + SL+ + QR + +QA Q ++ G
Sbjct: 369 WSTKQFDAILVDAPCSNSGVLGKRPEARWRLDEV-SLKELNQIQRDLLEQAFQHLKSSGR 427
Query: 478 IVYSTCTINPGENEAL 493
+VYSTC+ +P ENE L
Sbjct: 428 LVYSTCSFDPRENEDL 443
>gi|254735904|ref|ZP_05193610.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
str. Western North America USA6153]
Length = 444
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 62/96 (64%), Gaps = 1/96 (1%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G + +Q+ S++ A AL+P +G+ ILD CAAPGGKTT IA L+ G+V+++D +KV
Sbjct: 227 KGFLSIQDESSMLVARALEPDEGDVILDSCAAPGGKTTHIAERLKGTGQVMSLDLHAHKV 286
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRR-KNESNDE 334
I++ A +GL+ + T LDA K NE+ D+
Sbjct: 287 RLIKQQAERLGLENVETKALDARKVQEHFANETFDK 322
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F+ +FD++L+DAPCS G+ +P + ++ S R Q + ++ L++ GG
Sbjct: 315 FANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSER-LSMIQFAILEKIAPLLKQGGR 373
Query: 478 IVYSTCTINPGENE 491
+VYSTCTI ENE
Sbjct: 374 LVYSTCTIEKIENE 387
>gi|428204437|ref|YP_007083026.1| ribosomal RNA small subunit methyltransferase RsmB [Pleurocapsa sp.
PCC 7327]
gi|427981869|gb|AFY79469.1| ribosomal RNA small subunit methyltransferase RsmB [Pleurocapsa sp.
PCC 7327]
Length = 446
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 52/86 (60%), Gaps = 3/86 (3%)
Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
I QLP F EG +Q+ + + AH LDPQ GE ++D CAAPGGKTT IA L+ D G
Sbjct: 226 IQQLPGFQ---EGWWTVQDSSAQLVAHLLDPQPGEVVIDACAAPGGKTTHIAELMGDRGT 282
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKCI 314
+ A DR +++ +Q+ + L+ I
Sbjct: 283 IWACDRVESRLRKLQENIQRLQLQSI 308
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 427 DRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTC 483
DRVLLDAPCS LG RP + +T + + + Q + Q V+ GG +VY TC
Sbjct: 326 DRVLLDAPCSGLGTLHRRPDI-RWRQTPEKIAQLSRLQEELLTQTATWVKSGGTLVYVTC 384
Query: 484 TINPGENEAL 493
T+N ENE +
Sbjct: 385 TLNSLENETV 394
>gi|254526482|ref|ZP_05138534.1| ribosomal RNA small subunit methyltransferase B [Prochlorococcus
marinus str. MIT 9202]
gi|221537906|gb|EEE40359.1| ribosomal RNA small subunit methyltransferase B [Prochlorococcus
marinus str. MIT 9202]
Length = 438
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 59/110 (53%), Gaps = 12/110 (10%)
Query: 221 IAVDMHN---------RIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAA 271
I D+HN I LP + D G +Q+ S A L+P++GE+ILD CAA
Sbjct: 210 IIKDLHNGITLKSNPRSIKNLPGYSD---GLWTIQDRSSQWIAPLLNPKEGEKILDACAA 266
Query: 272 PGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
PG K+T +A L D E++AVDRS ++ +Q + LK + T K DA
Sbjct: 267 PGSKSTHLAELTNDSAEILAVDRSAKRLKILQSNLERLNLKSVNTLKTDA 316
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 8/73 (10%)
Query: 426 FDRVLLDAPCSALGL-----RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
FD++L+DAPCS +G R ++E I+SL Q ++ + L++ G +VY
Sbjct: 330 FDKILIDAPCSGIGTLSRNPDSRWSLSKEKIKSL---TLLQEKLLESIFPLLKKDGTLVY 386
Query: 481 STCTINPGENEAL 493
STCTI P +N L
Sbjct: 387 STCTICPDDNNLL 399
>gi|228992593|ref|ZP_04152520.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
pseudomycoides DSM 12442]
gi|228998641|ref|ZP_04158228.1| Ribosomal RNA small subunit methyltransferase B [Bacillus mycoides
Rock3-17]
gi|228761109|gb|EEM10068.1| Ribosomal RNA small subunit methyltransferase B [Bacillus mycoides
Rock3-17]
gi|228767227|gb|EEM15863.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
pseudomycoides DSM 12442]
Length = 415
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 84/165 (50%), Gaps = 19/165 (11%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G + +Q+ S++ A AL P++G+ +LD CAAPGGKTT IA L+ G+V ++D +KV
Sbjct: 199 GFLSIQDESSMLVARALKPEEGDMVLDSCAAPGGKTTHIAERLKGTGQVTSLDLHPHKVR 258
Query: 301 DIQKLAAEMGLKCITTYKLDALKAVRR-KNESNDEP---------NMCNSKDNNYITSQT 350
IQ+ A + L+ I T LDA K NES D+ + K + + +
Sbjct: 259 LIQQQAKRLELENIETKALDARKVQEHFANESFDKILVDAPCSGFGVIRRKPDIKLGKEK 318
Query: 351 SDSMK--------LHKEVPSIAAEGLNGDKSCK-EKVSNEKGVER 386
DS + L K P + A G +C EK+ NE+ +E+
Sbjct: 319 GDSERLSTIQLSILEKVAPLLKAGGRLVYSTCTIEKIENEQVIEQ 363
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F+ SFD++L+DAPCS G+ +P + +E S R Q + ++ L++ GG
Sbjct: 286 FANESFDKILVDAPCSGFGVIRRKPDIKLGKEKGDSER-LSTIQLSILEKVAPLLKAGGR 344
Query: 478 IVYSTCTINPGENE 491
+VYSTCTI ENE
Sbjct: 345 LVYSTCTIEKIENE 358
>gi|86605784|ref|YP_474547.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
JA-3-3Ab]
gi|86554326|gb|ABC99284.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
JA-3-3Ab]
Length = 448
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 55/94 (58%), Gaps = 3/94 (3%)
Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
I LP F +G +Q+ + H LDPQ GER++D CAAPGGKTT +A ++D GE
Sbjct: 232 ITALPGFA---QGWWSVQDASAQQVVHYLDPQPGERVIDCCAAPGGKTTHMAEQMQDRGE 288
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322
+ A+DR +++ +++ +GL I +D L
Sbjct: 289 IWALDRHPHRLRRLEENVQRLGLSSIRPLAIDLL 322
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 424 NSFDRVLLDAPCSALGLRPRLFAAE--ETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYS 481
S DRVLLDAPCS LG R A +T ++ Q ++ A + ++PGG++VY+
Sbjct: 338 QSADRVLLDAPCSGLGTLHRHADARWRQTPAQIQELAHLQAQLLQVAARWLKPGGLLVYA 397
Query: 482 TCTINPGENEAL 493
TCT++P ENEA+
Sbjct: 398 TCTLHPAENEAV 409
>gi|229006142|ref|ZP_04163829.1| Ribosomal RNA small subunit methyltransferase B [Bacillus mycoides
Rock1-4]
gi|228755095|gb|EEM04453.1| Ribosomal RNA small subunit methyltransferase B [Bacillus mycoides
Rock1-4]
Length = 415
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 84/165 (50%), Gaps = 19/165 (11%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G + +Q+ S++ A AL P++G+ +LD CAAPGGKTT IA L+ G+V ++D +KV
Sbjct: 199 GFLSIQDESSMLVARALKPEEGDMVLDSCAAPGGKTTHIAERLKGTGQVTSLDLHPHKVR 258
Query: 301 DIQKLAAEMGLKCITTYKLDALKAVRR-KNESNDEP---------NMCNSKDNNYITSQT 350
IQ+ A + L+ I T LDA K NES D+ + K + + +
Sbjct: 259 LIQQQAKRLELENIETKALDARKVQEHFANESFDKILVDAPCSGFGVIRRKPDIKLGKEK 318
Query: 351 SDSMK--------LHKEVPSIAAEGLNGDKSCK-EKVSNEKGVER 386
DS + L K P + A G +C EK+ NE+ +E+
Sbjct: 319 GDSERLSTIQLSILEKVAPLLKAGGRLVYSTCTIEKIENEQVIEQ 363
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F+ SFD++L+DAPCS G+ +P + +E S R Q + ++ L++ GG
Sbjct: 286 FANESFDKILVDAPCSGFGVIRRKPDIKLGKEKGDSER-LSTIQLSILEKVAPLLKAGGR 344
Query: 478 IVYSTCTINPGENE 491
+VYSTCTI ENE
Sbjct: 345 LVYSTCTIEKIENE 358
>gi|229092908|ref|ZP_04224042.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus
Rock3-42]
gi|228690530|gb|EEL44313.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus
Rock3-42]
Length = 360
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 62/96 (64%), Gaps = 1/96 (1%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G + +Q+ S++ A AL+P +G+ ILD CAAPGGKTT IA L+ G+V+++D +KV
Sbjct: 143 KGFLSIQDESSMLVARALEPDEGDVILDSCAAPGGKTTHIAERLKGTGQVMSLDLHAHKV 202
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRR-KNESNDE 334
I++ A +GL+ + T LDA K NE+ D+
Sbjct: 203 RLIKQQAERLGLENVETKALDARKVQEHFANETFDK 238
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F+ +FD++L+DAPCS G+ +P + ++ S R Q + ++ L++ GG
Sbjct: 231 FANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSER-LSTIQFAILEKIAPLLKQGGR 289
Query: 478 IVYSTCTINPGENE 491
+VYSTCTI ENE
Sbjct: 290 LVYSTCTIEKIENE 303
>gi|427731853|ref|YP_007078090.1| ribosomal RNA small subunit methyltransferase RsmB [Nostoc sp. PCC
7524]
gi|427367772|gb|AFY50493.1| ribosomal RNA small subunit methyltransferase RsmB [Nostoc sp. PCC
7524]
Length = 449
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 55/86 (63%), Gaps = 3/86 (3%)
Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
I LP F +G +Q+ + + +H LDPQ GE ++D CAAPGGKTT +A L+ D+G+
Sbjct: 225 IKNLPGFS---QGWWVVQDASAQLVSHFLDPQPGEVVVDACAAPGGKTTHMAELMEDQGK 281
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKCI 314
+ A DR+ +++ +++ A +GL I
Sbjct: 282 IWACDRTASRLRKLKENAQRLGLHSI 307
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 60/109 (55%), Gaps = 5/109 (4%)
Query: 385 ERTYVSKADTRKNMRRMRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGLRPRL 444
+RT ++N +R+ G Q G + + F+ ++ DRVLLDAPCS LG R
Sbjct: 286 DRTASRLRKLKENAQRL--GLHSIQICTGDSRDLSQFN-HTADRVLLDAPCSGLGTLHRH 342
Query: 445 FAAE--ETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENE 491
A +T +S+ Q+ + Q V+PGG++VY+TCT++P ENE
Sbjct: 343 ADARWRQTPESVFELSTLQKELMSQTSNFVKPGGVLVYATCTLHPAENE 391
>gi|196038686|ref|ZP_03105994.1| sun protein [Bacillus cereus NVH0597-99]
gi|196030409|gb|EDX69008.1| sun protein [Bacillus cereus NVH0597-99]
Length = 444
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 62/96 (64%), Gaps = 1/96 (1%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G + +Q+ S++ A AL+P +G+ ILD CAAPGGKTT IA L+ G+V+++D +KV
Sbjct: 227 KGFLSIQDESSMLVARALEPDEGDVILDSCAAPGGKTTHIAERLKGTGQVMSLDLHAHKV 286
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRR-KNESNDE 334
I++ A +GL+ + T LDA K NE+ D+
Sbjct: 287 RLIKQQAERLGLENVETKALDARKVQEHFANETFDK 322
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F+ +FD++L+DAPCS G+ +P + ++ S R Q + ++ L++ GG
Sbjct: 315 FANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSER-LSMIQFAILEKIAPLLKQGGR 373
Query: 478 IVYSTCTINPGENE 491
+VYSTCTI ENE
Sbjct: 374 LVYSTCTIEKIENE 387
>gi|164687800|ref|ZP_02211828.1| hypothetical protein CLOBAR_01444 [Clostridium bartlettii DSM
16795]
gi|164603075|gb|EDQ96540.1| ribosomal RNA small subunit methyltransferase B [Clostridium
bartlettii DSM 16795]
Length = 441
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 73/138 (52%), Gaps = 11/138 (7%)
Query: 196 ERSGLYIGQGTAMMSRAGIFRASEGIAVD-----MHNRIFQLPSFYDVLEGEIF------ 244
ER +Y+ T +R + + E V+ + ++ + ++ E++
Sbjct: 174 ERPSIYLRVNTLKTTRDELIKLLEEQEVNCEKVPFMDEAIKVNNLKNIENNELYKKGLFT 233
Query: 245 LQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQK 304
+Q++ S++ L+PQK ++LD+C+APGGKTT IA+L+ + G+V++ D +K+ IQ
Sbjct: 234 VQDISSMLVGKILNPQKDTKVLDVCSAPGGKTTHIATLMENSGQVISRDIFEHKIKLIQN 293
Query: 305 LAAEMGLKCITTYKLDAL 322
+GLK + DAL
Sbjct: 294 SVNRLGLKNVDVQLFDAL 311
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 422 SPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGII 478
S + FD VL D PCS LG+ +P + E+ + +++ K Q+++ A + V+ GG +
Sbjct: 317 SIDKFDSVLADVPCSGLGIIKRKPEIKYKEK--EEIKDLPKLQKQILQNAAKYVKVGGTL 374
Query: 479 VYSTCTINPGEN 490
+YSTCTI EN
Sbjct: 375 IYSTCTIQDDEN 386
>gi|30263868|ref|NP_846245.1| sun protein [Bacillus anthracis str. Ames]
gi|47529294|ref|YP_020643.1| sun protein [Bacillus anthracis str. 'Ames Ancestor']
gi|49186715|ref|YP_029967.1| sun protein [Bacillus anthracis str. Sterne]
gi|49478421|ref|YP_037926.1| sun protein [Bacillus thuringiensis serovar konkukian str. 97-27]
gi|118479087|ref|YP_896238.1| sun protein [Bacillus thuringiensis str. Al Hakam]
gi|165872297|ref|ZP_02216934.1| sun protein [Bacillus anthracis str. A0488]
gi|167636414|ref|ZP_02394713.1| sun protein [Bacillus anthracis str. A0442]
gi|167641141|ref|ZP_02399396.1| sun protein [Bacillus anthracis str. A0193]
gi|170688847|ref|ZP_02880050.1| sun protein [Bacillus anthracis str. A0465]
gi|170708813|ref|ZP_02899249.1| sun protein [Bacillus anthracis str. A0389]
gi|177654922|ref|ZP_02936639.1| sun protein [Bacillus anthracis str. A0174]
gi|190565749|ref|ZP_03018668.1| sun protein [Bacillus anthracis str. Tsiankovskii-I]
gi|196035830|ref|ZP_03103232.1| sun protein [Bacillus cereus W]
gi|196047441|ref|ZP_03114653.1| sun protein [Bacillus cereus 03BB108]
gi|218904995|ref|YP_002452829.1| sun protein [Bacillus cereus AH820]
gi|227813227|ref|YP_002813236.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
str. CDC 684]
gi|229603771|ref|YP_002868102.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
str. A0248]
gi|254683426|ref|ZP_05147286.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
str. CNEVA-9066]
gi|254721397|ref|ZP_05183186.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
str. A1055]
gi|254739848|ref|ZP_05197541.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
str. Kruger B]
gi|254751038|ref|ZP_05203077.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
str. Vollum]
gi|254756703|ref|ZP_05208732.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
str. Australia 94]
gi|301055356|ref|YP_003793567.1| sun protein [Bacillus cereus biovar anthracis str. CI]
gi|376267761|ref|YP_005120473.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
F837/76]
gi|386737687|ref|YP_006210868.1| Sun protein [Bacillus anthracis str. H9401]
gi|421507405|ref|ZP_15954325.1| 16S rRNA methyltransferase B [Bacillus anthracis str. UR-1]
gi|421639620|ref|ZP_16080211.1| 16S rRNA methyltransferase B [Bacillus anthracis str. BF1]
gi|423550386|ref|ZP_17526713.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
ISP3191]
gi|30258512|gb|AAP27731.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
str. Ames]
gi|47504442|gb|AAT33118.1| sun protein [Bacillus anthracis str. 'Ames Ancestor']
gi|49180642|gb|AAT56018.1| sun protein [Bacillus anthracis str. Sterne]
gi|49329977|gb|AAT60623.1| sun protein [Bacillus thuringiensis serovar konkukian str. 97-27]
gi|118418312|gb|ABK86731.1| sun protein [Bacillus thuringiensis str. Al Hakam]
gi|164711973|gb|EDR17513.1| sun protein [Bacillus anthracis str. A0488]
gi|167510921|gb|EDR86312.1| sun protein [Bacillus anthracis str. A0193]
gi|167528156|gb|EDR90943.1| sun protein [Bacillus anthracis str. A0442]
gi|170126298|gb|EDS95189.1| sun protein [Bacillus anthracis str. A0389]
gi|170667202|gb|EDT17962.1| sun protein [Bacillus anthracis str. A0465]
gi|172080433|gb|EDT65520.1| sun protein [Bacillus anthracis str. A0174]
gi|190562668|gb|EDV16634.1| sun protein [Bacillus anthracis str. Tsiankovskii-I]
gi|195991479|gb|EDX55445.1| sun protein [Bacillus cereus W]
gi|196021749|gb|EDX60444.1| sun protein [Bacillus cereus 03BB108]
gi|218535394|gb|ACK87792.1| sun protein [Bacillus cereus AH820]
gi|227005311|gb|ACP15054.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
str. CDC 684]
gi|229268179|gb|ACQ49816.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
str. A0248]
gi|300377525|gb|ADK06429.1| sun protein [Bacillus cereus biovar anthracis str. CI]
gi|364513561|gb|AEW56960.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
F837/76]
gi|384387539|gb|AFH85200.1| Sun protein [Bacillus anthracis str. H9401]
gi|401190002|gb|EJQ97052.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
ISP3191]
gi|401822539|gb|EJT21689.1| 16S rRNA methyltransferase B [Bacillus anthracis str. UR-1]
gi|403393285|gb|EJY90530.1| 16S rRNA methyltransferase B [Bacillus anthracis str. BF1]
Length = 444
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 62/96 (64%), Gaps = 1/96 (1%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G + +Q+ S++ A AL+P +G+ ILD CAAPGGKTT IA L+ G+V+++D +KV
Sbjct: 227 KGFLSIQDESSMLVARALEPDEGDVILDSCAAPGGKTTHIAERLKGTGQVMSLDLHAHKV 286
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRR-KNESNDE 334
I++ A +GL+ + T LDA K NE+ D+
Sbjct: 287 RLIKQQAERLGLENVETKALDARKVQEHFANETFDK 322
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F+ +FD++L+DAPCS G+ +P + ++ S R Q + ++ L++ GG
Sbjct: 315 FANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSER-LSMIQFAILEKIAPLLKQGGR 373
Query: 478 IVYSTCTINPGENE 491
+VYSTCTI ENE
Sbjct: 374 LVYSTCTIEKIENE 387
>gi|228916502|ref|ZP_04080068.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228928913|ref|ZP_04091945.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228935179|ref|ZP_04098006.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228947584|ref|ZP_04109874.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|229123379|ref|ZP_04252583.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus 95/8201]
gi|229186105|ref|ZP_04313274.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus BGSC
6E1]
gi|228597281|gb|EEK54932.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus BGSC
6E1]
gi|228660155|gb|EEL15791.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus 95/8201]
gi|228812104|gb|EEM58435.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228824544|gb|EEM70349.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228830720|gb|EEM76325.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228843081|gb|EEM88163.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
Length = 360
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 62/96 (64%), Gaps = 1/96 (1%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G + +Q+ S++ A AL+P +G+ ILD CAAPGGKTT IA L+ G+V+++D +KV
Sbjct: 143 KGFLSIQDESSMLVARALEPDEGDVILDSCAAPGGKTTHIAERLKGTGQVMSLDLHAHKV 202
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRR-KNESNDE 334
I++ A +GL+ + T LDA K NE+ D+
Sbjct: 203 RLIKQQAERLGLENVETKALDARKVQEHFANETFDK 238
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F+ +FD++L+DAPCS G+ +P + ++ S R Q + ++ L++ GG
Sbjct: 231 FANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERL-SMIQFAILEKIAPLLKQGGR 289
Query: 478 IVYSTCTINPGENE 491
+VYSTCTI ENE
Sbjct: 290 LVYSTCTIEKIENE 303
>gi|154339076|ref|XP_001565760.1| hypothetical protein, conserved [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134062812|emb|CAM39258.1| hypothetical protein, conserved [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 842
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 47/73 (64%), Gaps = 4/73 (5%)
Query: 424 NSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVR----PGGIIV 479
++FD VLLD PC+ +GLRP+L ++ S++ YQR++FD ++ +R G++V
Sbjct: 650 DTFDAVLLDPPCTGMGLRPKLMPHMQSAASIQRSADYQRKLFDSCIRHIRGSPTSPGVLV 709
Query: 480 YSTCTINPGENEA 492
YSTCT ENEA
Sbjct: 710 YSTCTTTLEENEA 722
>gi|448678053|ref|ZP_21689243.1| tRNA and rRNA cytosine-C5-methylase [Haloarcula argentinensis DSM
12282]
gi|445773728|gb|EMA24761.1| tRNA and rRNA cytosine-C5-methylase [Haloarcula argentinensis DSM
12282]
Length = 303
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 54/103 (52%), Gaps = 5/103 (4%)
Query: 223 VDMHNRIFQLP-----SFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTT 277
VD H+ +F LP + + G I Q S++ A LDPQ GER+ D CAAPG KTT
Sbjct: 55 VDWHDGLFVLPEDSPGANWPYFHGWIHGQEEVSVIPATVLDPQPGERVWDACAAPGSKTT 114
Query: 278 AIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
+A+ + D GEVVA D + ++ ++ +G + D
Sbjct: 115 QLAARMEDAGEVVATDNNLGRISALRTNTERLGATTVAVTHED 157
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 413 GRAENSKGFSPNSFDRVLLDAPCSALG-LRPRLFAAEE-TIQSLRNHGKYQRRMFDQAVQ 470
GR + K F +DR L+D PCS G +R E+ ++ + Q+ + +AV+
Sbjct: 158 GRNHSLKPFGGEGYDRALVDVPCSCEGTIRKNPDTLEDWSLSHVEGISGVQKGILKRAVE 217
Query: 471 LVRPGGIIVYSTCTINPGENEAL 493
+ PGG +VYSTCT P ENEA+
Sbjct: 218 VTEPGGTVVYSTCTFAPEENEAV 240
>gi|14591319|ref|NP_143397.1| hypothetical protein PH1537 [Pyrococcus horikoshii OT3]
gi|3257964|dbj|BAA30647.1| 312aa long hypothetical nucleolar protein [Pyrococcus horikoshii
OT3]
Length = 312
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 51/73 (69%), Gaps = 2/73 (2%)
Query: 424 NSFDRVLLDAPCSALGL--RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYS 481
++FDR+LLDAPCS++G+ + FA ++ + H + Q+++ A + ++PGG++VYS
Sbjct: 178 DTFDRILLDAPCSSVGMIRKNFKFAKTWSLGKVYYHSRLQKKLILAAYRALKPGGVLVYS 237
Query: 482 TCTINPGENEALC 494
TCT++P ENE +
Sbjct: 238 TCTVDPLENEEVV 250
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 35/58 (60%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNK 298
G I Q S++ LDP+ GE ILDM AAPG KTT IA + ++G ++A D ++
Sbjct: 90 GLIIPQEASSMIPPVVLDPKPGELILDMAAAPGSKTTQIAQYMENDGCIIANDAKRDR 147
>gi|375083393|ref|ZP_09730416.1| nucleolar protein I [Thermococcus litoralis DSM 5473]
gi|374741903|gb|EHR78318.1| nucleolar protein I [Thermococcus litoralis DSM 5473]
Length = 304
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 50/70 (71%), Gaps = 2/70 (2%)
Query: 424 NSFDRVLLDAPCSALGL--RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYS 481
N+FDRVLLDAPCS++G+ + F + +++ + + Q+++ A + ++PGG++VYS
Sbjct: 172 NTFDRVLLDAPCSSVGMIRKSFKFLTDWSMKKVIRYSNIQKKLIVAAYKALKPGGVLVYS 231
Query: 482 TCTINPGENE 491
TCTI+P ENE
Sbjct: 232 TCTIDPLENE 241
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
Query: 235 FYDVLE---GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVA 291
F D++E G +F Q S++ LDP+ E +LDM AAPG KTT IA +++EG ++A
Sbjct: 75 FGDMIEYALGLVFPQEASSMIPPVVLDPKPRELVLDMAAAPGAKTTQIAQYMKNEGCIIA 134
Query: 292 VD 293
D
Sbjct: 135 ND 136
>gi|228987008|ref|ZP_04147134.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|229157441|ref|ZP_04285519.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus ATCC
4342]
gi|228626168|gb|EEK82917.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus ATCC
4342]
gi|228772786|gb|EEM21226.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
Length = 360
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 87/166 (52%), Gaps = 19/166 (11%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G + +Q+ S++ A AL+P +G+ +LD CAAPGGKTT IA L+ G+V+++D +KV
Sbjct: 143 KGFLSIQDESSMLVARALEPDEGDVVLDSCAAPGGKTTHIAERLKGTGQVMSLDLHAHKV 202
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRR-KNESND----------------EPNMCNSKD 342
I++ A +GL+ + T LDA K NE+ D +P++ KD
Sbjct: 203 RLIKQQAERLGLENVETKALDARKVQEHFANETFDKILVDAPCSGFGVIRRKPDIKLGKD 262
Query: 343 NNYITSQTSDSMKLHKEVPSIAAEG--LNGDKSCKEKVSNEKGVER 386
++ + + +++ + +G L EK+ NE+ +ER
Sbjct: 263 KGDSERLSTIQLAILEKIAPLLKQGGRLVYSTCTIEKIENEQVIER 308
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F+ +FD++L+DAPCS G+ +P + ++ S R Q + ++ L++ GG
Sbjct: 231 FANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSER-LSTIQLAILEKIAPLLKQGGR 289
Query: 478 IVYSTCTINPGENE 491
+VYSTCTI ENE
Sbjct: 290 LVYSTCTIEKIENE 303
>gi|379012011|ref|YP_005269823.1| ribosomal RNA small subunit methyltransferase B [Acetobacterium
woodii DSM 1030]
gi|375302800|gb|AFA48934.1| ribosomal RNA small subunit methyltransferase B [Acetobacterium
woodii DSM 1030]
Length = 441
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 50/71 (70%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
EG+ +Q+ +++T LDP+ G+R+LDMCAAPGGKTT ++ L+ +EGE++A D +++
Sbjct: 237 EGQFLIQDQAAMITVERLDPKPGQRVLDMCAAPGGKTTYLSQLMNNEGEIIARDVFPHRL 296
Query: 300 MDIQKLAAEMG 310
I++ +G
Sbjct: 297 KLIKQQLRRLG 307
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
Query: 425 SFDRVLLDAPCSALGL--RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYST 482
+FD++L+DAPC+ LG+ R + + + K Q + + AV+ ++PGG ++YST
Sbjct: 328 TFDKILVDAPCTGLGVIRRKPEIKYHHSKEDRKALVKIQEVLLENAVRYLKPGGELLYST 387
Query: 483 CTINPGENE 491
CT+N ENE
Sbjct: 388 CTVNKDENE 396
>gi|337283536|ref|YP_004623010.1| sun protein (fmu protein) [Pyrococcus yayanosii CH1]
gi|334899470|gb|AEH23738.1| sun protein (fmu protein) [Pyrococcus yayanosii CH1]
Length = 450
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 50/74 (67%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G +Q+L S AH L P+ GER+LD+ AAPG KT A+L+ ++GE+VAVD S+ +++
Sbjct: 241 GYFVIQDLASAYVAHVLKPEPGERVLDLAAAPGSKTFHAAALMENKGEIVAVDYSYERLI 300
Query: 301 DIQKLAAEMGLKCI 314
+++ +G+K +
Sbjct: 301 KMKERMKRLGVKNV 314
Score = 42.4 bits (98), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 6/111 (5%)
Query: 383 GVERTYVSKADTRKNMRRMRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGLRP 442
V+ +Y ++ M+R+ G + + +N K FD+++LDAPCS+ G
Sbjct: 291 AVDYSYERLIKMKERMKRL--GVKNVRLVHADGQNFK--DERDFDKIILDAPCSSSGTYR 346
Query: 443 RLFAAEETI--QSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENE 491
+ + ++ QR M A + +R G + YSTC+I ENE
Sbjct: 347 QFPEVKWRFDENKIKRVISVQRNMLLNAYENLRADGEMTYSTCSIRIDENE 397
>gi|424811862|ref|ZP_18237102.1| tRNA and rRNA cytosine-C5-methylase [Candidatus Nanosalinarum sp.
J07AB56]
gi|339756084|gb|EGQ39667.1| tRNA and rRNA cytosine-C5-methylase [Candidatus Nanosalinarum sp.
J07AB56]
Length = 264
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 57/101 (56%), Gaps = 6/101 (5%)
Query: 224 DMHNRIFQLP------SFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTT 277
D + R+F+LP + Y GE ++Q + V L+PQ GE +LD+CAAPGGKT+
Sbjct: 27 DWNPRVFRLPEAEKPGNTYMHWRGEYYVQEESAAVPVDILNPQPGESVLDLCAAPGGKTS 86
Query: 278 AIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYK 318
IA+ + GE+VA D S N++ +Q + G TT +
Sbjct: 87 QIAARTGNRGELVANDSSRNRLSSLQVNSYRTGAAAATTCR 127
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 43/70 (61%)
Query: 424 NSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTC 483
+ FD+VL+DAPC+ G R R ++ + Q R+ + A +LV P G +VYSTC
Sbjct: 136 DRFDKVLVDAPCTGEGDRLRRGEGAADPENSEGLARLQYRLLEAAARLVNPSGAVVYSTC 195
Query: 484 TINPGENEAL 493
T++P ENEA+
Sbjct: 196 TLSPHENEAV 205
>gi|397651760|ref|YP_006492341.1| nol1-nop2-sun family nucleolar protein II [Pyrococcus furiosus
COM1]
gi|393189351|gb|AFN04049.1| nol1-nop2-sun family nucleolar protein II [Pyrococcus furiosus
COM1]
Length = 433
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 52/75 (69%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G +Q+L S AH L P+ GER+LD+ AAPG KT A+L+ ++GE+VAVD S+ ++
Sbjct: 223 KGYFVIQDLASAYVAHVLSPEPGERVLDLAAAPGSKTFHAAALMENKGEIVAVDYSYERL 282
Query: 300 MDIQKLAAEMGLKCI 314
+ +++ ++G+K +
Sbjct: 283 VRMKERMKKLGVKNV 297
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 10/73 (13%)
Query: 425 SFDRVLLDAPCSALGLRPRLFAA------EETIQSLRNHGKYQRRMFDQAVQLVRPGGII 478
FD+++LDAPCS+ G R F EE I+ + + QR M A + ++ GG +
Sbjct: 312 KFDKIILDAPCSSSGTY-RQFPEVKWRFNEEKIKRIIS---VQRNMLINAFRNLKEGGEM 367
Query: 479 VYSTCTINPGENE 491
YSTC++ ENE
Sbjct: 368 TYSTCSVRIDENE 380
>gi|411120538|ref|ZP_11392910.1| ribosomal RNA small subunit methyltransferase RsmB [Oscillatoriales
cyanobacterium JSC-12]
gi|410709207|gb|EKQ66722.1| ribosomal RNA small subunit methyltransferase RsmB [Oscillatoriales
cyanobacterium JSC-12]
Length = 451
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 63/106 (59%), Gaps = 4/106 (3%)
Query: 228 RIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEG 287
RI LP F D G +Q+ + + ++ LDPQ GE ++D CAAPGGKTT IA L+ D+G
Sbjct: 225 RIQDLPGFQD---GWWVVQDCSAQLVSYLLDPQPGEVVIDACAAPGGKTTHIAELMNDQG 281
Query: 288 EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESND 333
V A D++ +++ +++ + L+ I + D+ + + R N+ D
Sbjct: 282 TVWACDKTSSRLKKLEQNCDRLQLQSIRIHHGDS-RVLPRFNQPAD 326
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 427 DRVLLDAPCSALGLRPRLFAAE--ETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCT 484
DRVLLDAPCS LG R A +T ++ Q + +QA ++ G++VY+TCT
Sbjct: 326 DRVLLDAPCSGLGTLHRHADARWRQTPDTVNQLVSLQCALLEQAASWIKANGVLVYATCT 385
Query: 485 INPGENEAL 493
++P ENE +
Sbjct: 386 LHPAENEQI 394
>gi|18977637|ref|NP_578994.1| nol1-nop2-sun family nucleolar protein II [Pyrococcus furiosus DSM
3638]
gi|18893359|gb|AAL81389.1| putative nucleolar protein II (nol1-nop2-sun family) [Pyrococcus
furiosus DSM 3638]
Length = 450
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 52/75 (69%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G +Q+L S AH L P+ GER+LD+ AAPG KT A+L+ ++GE+VAVD S+ ++
Sbjct: 240 KGYFVIQDLASAYVAHVLSPEPGERVLDLAAAPGSKTFHAAALMENKGEIVAVDYSYERL 299
Query: 300 MDIQKLAAEMGLKCI 314
+ +++ ++G+K +
Sbjct: 300 VRMKERMKKLGVKNV 314
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 12/74 (16%)
Query: 425 SFDRVLLDAPCSALG-------LRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
FD+++LDAPCS+ G ++ R EE I+ + + QR M A + ++ GG
Sbjct: 329 KFDKIILDAPCSSSGTYRQFPEVKWRF--NEEKIKRIIS---VQRNMLINAFRNLKEGGE 383
Query: 478 IVYSTCTINPGENE 491
+ YSTC++ ENE
Sbjct: 384 MTYSTCSVRIDENE 397
>gi|443478406|ref|ZP_21068164.1| sun protein [Pseudanabaena biceps PCC 7429]
gi|443016313|gb|ELS31003.1| sun protein [Pseudanabaena biceps PCC 7429]
Length = 450
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 59/93 (63%), Gaps = 3/93 (3%)
Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
+ QLP F EG +Q+ + + + LDPQ E ++D CAAPGGKTT I+ L++ G+
Sbjct: 228 VSQLPKFK---EGWWSVQDASAQLVTYLLDPQPHEIVVDACAAPGGKTTHISDRLKNTGK 284
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
V A+DR +++ +++ AA +G+ + T +LDA
Sbjct: 285 VYALDRLASRLKKVEQNAARLGITNVQTIELDA 317
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 402 RNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAE--ETIQSLRNHGK 459
R G Q + A G DRVLLD PCS LG R A +T K
Sbjct: 304 RLGITNVQTIELDAREFAGIPEGKCDRVLLDVPCSGLGTLHRHADARWRQTPDEPYKLAK 363
Query: 460 YQRRMFDQAVQLVRPGGIIVYSTCTINPGENE 491
Q + QA+Q V+P G+IVYSTCTI+P ENE
Sbjct: 364 TQSEILAQAMQWVKPEGVIVYSTCTIHPAENE 395
>gi|20807946|ref|NP_623117.1| tRNA and rRNA cytosine-C5-methylase [Thermoanaerobacter
tengcongensis MB4]
gi|254479565|ref|ZP_05092880.1| ribosomal RNA small subunit methyltransferase B [Carboxydibrachium
pacificum DSM 12653]
gi|20516516|gb|AAM24721.1| tRNA and rRNA cytosine-C5-methylases [Thermoanaerobacter
tengcongensis MB4]
gi|214034503|gb|EEB75262.1| ribosomal RNA small subunit methyltransferase B [Carboxydibrachium
pacificum DSM 12653]
Length = 443
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 63/108 (58%), Gaps = 6/108 (5%)
Query: 215 FRASEGIAVDMHNRIFQLPSFYDVL-EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPG 273
+ E + +D+ N P + + +G I Q+ S++ + L PQKGERILD+CAAPG
Sbjct: 205 YYLEEALYIDLKN-----PESHPIYKDGLIHPQDEASMLVSRILSPQKGERILDVCAAPG 259
Query: 274 GKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
GKTT I+ ++ + GEVVA D +++ I++ +G+ + T DA
Sbjct: 260 GKTTHISQIMENTGEVVAFDLHPHRLKLIEENCRRLGVTNVKTEVFDA 307
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 427 DRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTC 483
DRVL D PC+ +G+ +P + + LR + Q R+ + V+ GG++VYSTC
Sbjct: 319 DRVLADVPCTGIGIIRKKPDIKLKSYDKEELRGLIERQYRILKSSSLYVKKGGVLVYSTC 378
Query: 484 TINPGENEALC 494
TI EN+ +
Sbjct: 379 TIGREENQEVI 389
>gi|225865846|ref|YP_002751224.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
03BB102]
gi|225787241|gb|ACO27458.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
03BB102]
Length = 444
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 62/96 (64%), Gaps = 1/96 (1%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G + +Q+ S++ A AL+P +G+ ILD CAAPGGKTT IA L+ G+V+++D +KV
Sbjct: 227 KGFLSIQDESSMLIARALEPDEGDVILDSCAAPGGKTTHIAERLKGTGQVMSLDLHAHKV 286
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRR-KNESNDE 334
I++ A +GL+ + T LDA K NE+ D+
Sbjct: 287 RLIKQQAERLGLENVETKALDARKVQEHFANETFDK 322
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F+ +FD++L+DAPCS G+ +P + ++ S R Q + ++ L++ GG
Sbjct: 315 FANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSER-LSMIQFAILEKIAPLLKQGGR 373
Query: 478 IVYSTCTINPGENE 491
+VYSTCTI ENE
Sbjct: 374 LVYSTCTIEKIENE 387
>gi|427719814|ref|YP_007067808.1| sun protein [Calothrix sp. PCC 7507]
gi|427352250|gb|AFY34974.1| sun protein [Calothrix sp. PCC 7507]
Length = 451
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 55/86 (63%), Gaps = 3/86 (3%)
Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
I LP F EG +Q+ + + +H LDPQ GE ++D+CAAPGGKTT IA L+ D G+
Sbjct: 227 IPNLPGFQ---EGWWTVQDSSAQLVSHLLDPQPGEVVIDVCAAPGGKTTHIAELMGDSGK 283
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKCI 314
V A DR+ +++ +Q+ + + L+ I
Sbjct: 284 VWACDRTASRLRKLQENSRRLNLQSI 309
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 60/115 (52%), Gaps = 9/115 (7%)
Query: 385 ERTYVSKADTRKNMRRMRNGPGRNQCLGGRAENSKGFSP--NSFDRVLLDAPCSALGLRP 442
+RT ++N RR+ N C G +S+ FS N DRVLLDAPCS LG
Sbjct: 288 DRTASRLRKLQENSRRL-NLQSIEICTG----DSRHFSQFYNVGDRVLLDAPCSGLGTLH 342
Query: 443 RLFAAE--ETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEALCA 495
R A +T +++ K Q + + V+ G++VY+TCT++P ENE + +
Sbjct: 343 RHADARWRQTPEAIAELAKLQAELISHTSKFVKKNGVLVYATCTLHPAENEGVIS 397
>gi|332157765|ref|YP_004423044.1| hypothetical protein PNA2_0122 [Pyrococcus sp. NA2]
gi|331033228|gb|AEC51040.1| nucleolar protein [Pyrococcus sp. NA2]
Length = 311
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 2/73 (2%)
Query: 424 NSFDRVLLDAPCSALGL--RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYS 481
N FD+VLLDAPCS++G+ + FA ++ + H + Q+R+ A + ++PGG +VYS
Sbjct: 178 NVFDKVLLDAPCSSVGMIRKNFKFAKTWSLGKVYYHSRLQKRLILAAYKALKPGGTLVYS 237
Query: 482 TCTINPGENEALC 494
TCT++P ENE +
Sbjct: 238 TCTVDPLENEEVV 250
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 35/58 (60%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNK 298
G I Q S++ LDP+ GE +LDM AAPG KTT IA + +EG ++A D ++
Sbjct: 90 GLIIPQEASSMIPPVVLDPKPGELVLDMAAAPGSKTTQIAQYMENEGCIIANDAKRDR 147
>gi|434391954|ref|YP_007126901.1| sun protein [Gloeocapsa sp. PCC 7428]
gi|428263795|gb|AFZ29741.1| sun protein [Gloeocapsa sp. PCC 7428]
Length = 446
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 67/131 (51%), Gaps = 13/131 (9%)
Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
I +LP F G +Q+ + + +H LDPQ GE ++D CAAPGGKTT IA L++D G
Sbjct: 224 IEKLPGFD---AGWWTVQDSSAQLVSHILDPQPGEVVIDACAAPGGKTTHIAELMQDTGT 280
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITS 348
+ A DR+ +++ +Q+ A + LK I D S + P+ N D + +
Sbjct: 281 IWACDRTVSRLKKLQQNIARLQLKSIQICPGD----------SRNLPHFVNIADRVLLDA 330
Query: 349 QTSDSMKLHKE 359
S LH+
Sbjct: 331 PCSGLGTLHRH 341
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 409 QCLGGRAENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAE--ETIQSLRNHGKYQRRMFD 466
Q G + N F N DRVLLDAPCS LG R A +T ++++ Q +
Sbjct: 307 QICPGDSRNLPHFV-NIADRVLLDAPCSGLGTLHRHADARWRQTPETVKELTVLQTELLT 365
Query: 467 QAVQLVRPGGIIVYSTCTINPGENEAL 493
++PGG++VY+TCT+N ENEA+
Sbjct: 366 HVSTWIKPGGVLVYATCTLNSEENEAI 392
>gi|423406710|ref|ZP_17383859.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG2X1-3]
gi|401660000|gb|EJS77483.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG2X1-3]
Length = 444
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 62/96 (64%), Gaps = 1/96 (1%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G + +Q+ S++ A AL+P +G+ +LD CAAPGGKTT IA L+ G+V+++D +KV
Sbjct: 227 KGFLSIQDESSMLVARALEPDEGDVVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKV 286
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRR-KNESNDE 334
I++ A +GL+ + T LDA K NES D+
Sbjct: 287 RLIKQQADRLGLENVETKALDARKVQEHFANESFDK 322
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F+ SFD++L+DAPCS G+ +P + ++ S R Q + ++ L++ GG
Sbjct: 315 FANESFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSER-LSTIQLAILEKIAPLLKQGGR 373
Query: 478 IVYSTCTINPGENE 491
+VYSTCTI ENE
Sbjct: 374 LVYSTCTIEKIENE 387
>gi|212639615|ref|YP_002316135.1| rRNA cytosine-C5-methylase [Anoxybacillus flavithermus WK1]
gi|212561095|gb|ACJ34150.1| rRNA cytosine-C5-methylase [Anoxybacillus flavithermus WK1]
Length = 446
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 55/85 (64%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
EG I +Q+ S++ A+AL P + + +LD CAAPGGKTT IA + + G VVA+D +KV
Sbjct: 226 EGLITIQDESSMLVAYALSPNETDVVLDCCAAPGGKTTHIAERMNNRGRVVALDIHDHKV 285
Query: 300 MDIQKLAAEMGLKCITTYKLDALKA 324
I++ A +GL I +LD+ +A
Sbjct: 286 KLIEQQAKRLGLSNIEAKQLDSRQA 310
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 8/80 (10%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAA--EETIQSLRNHGKYQRRMFDQAVQLVRPG 475
F+ +FDR+L+DAPCS LG+ +P + A E+ I L N Q + L++ G
Sbjct: 314 FAAETFDRILVDAPCSGLGVIRRKPEIKYAKNEKDITQLAN---VQLNILRAVAPLLKRG 370
Query: 476 GIIVYSTCTINPGENEALCA 495
G +VYSTCT++ ENE + A
Sbjct: 371 GTLVYSTCTVDREENEQVIA 390
>gi|269102648|ref|ZP_06155345.1| ribosomal RNA small subunit methyltransferase F [Photobacterium
damselae subsp. damselae CIP 102761]
gi|268162546|gb|EEZ41042.1| ribosomal RNA small subunit methyltransferase F [Photobacterium
damselae subsp. damselae CIP 102761]
Length = 373
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 50/77 (64%), Gaps = 2/77 (2%)
Query: 420 GFSPNSFDRVLLDAPCSALG-LRPRLFAAEE-TIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
G++P SFD +LLDAPCS G +R A + T+ S+ + QR + A Q ++PGG+
Sbjct: 78 GWAPESFDSILLDAPCSGEGAIRKDEDAMKNWTLNSIEEIAEVQRNLIVSAFQALKPGGV 137
Query: 478 IVYSTCTINPGENEALC 494
+VYSTCT+N EN+ +C
Sbjct: 138 MVYSTCTLNTRENQDVC 154
>gi|358410649|gb|AEU10038.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Photobacterium
damselae subsp. piscicida]
Length = 476
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 54/89 (60%), Gaps = 8/89 (8%)
Query: 408 NQCLGGRAENSKGFSPNSFDRVLLDAPCSALG-LRPRLFAAEE-TIQSLRNHGKYQRRMF 465
N C+ G G++P SFD +LLDAPCS G +R A + T+ S+ + QR +
Sbjct: 175 NGCVFG------GWAPESFDSILLDAPCSGEGAIRKDEDAMKNWTLNSIEEIAEVQRNLI 228
Query: 466 DQAVQLVRPGGIIVYSTCTINPGENEALC 494
A Q ++PGG++VYSTCT+N EN+ +C
Sbjct: 229 VSAFQALKPGGVMVYSTCTLNTRENQDVC 257
>gi|440683854|ref|YP_007158649.1| sun protein [Anabaena cylindrica PCC 7122]
gi|428680973|gb|AFZ59739.1| sun protein [Anabaena cylindrica PCC 7122]
Length = 455
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 60/104 (57%), Gaps = 3/104 (2%)
Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
I LP F EG +Q+ + + H LDP+ GE ++D CAAPGGKTT IA L+ D G+
Sbjct: 232 IQNLPGFR---EGWWTIQDSSAQLVGHLLDPKPGEVVIDACAAPGGKTTHIAELMGDHGK 288
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESN 332
+ A D++ +++ +Q A + L+ I Y D+ + N+++
Sbjct: 289 IWACDKTASRLRKLQDNARRLNLQSIEIYTGDSCNLPQFYNQAD 332
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 424 NSFDRVLLDAPCSALGLRPRLFAAE--ETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYS 481
N DRVLLDAPCS LG R A +T +S++ Q ++ V+ G++VY+
Sbjct: 329 NQADRVLLDAPCSGLGTMHRHADARWRQTPESIQQLSLLQTKLLSHTSNFVKDNGVLVYA 388
Query: 482 TCTINPGENEALCA 495
TCT++P ENE + +
Sbjct: 389 TCTLHPAENEEVIS 402
>gi|326389542|ref|ZP_08211109.1| sun protein [Thermoanaerobacter ethanolicus JW 200]
gi|392940847|ref|ZP_10306491.1| ribosomal RNA small subunit methyltransferase RsmB
[Thermoanaerobacter siderophilus SR4]
gi|325994547|gb|EGD52972.1| sun protein [Thermoanaerobacter ethanolicus JW 200]
gi|392292597|gb|EIW01041.1| ribosomal RNA small subunit methyltransferase RsmB
[Thermoanaerobacter siderophilus SR4]
Length = 444
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 66/108 (61%), Gaps = 6/108 (5%)
Query: 215 FRASEGIAVDMHNRIFQLPSFYDVL-EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPG 273
+ E + +D+ N P + + EG I++Q+ S++ + L+P++G+ +LD+CAAPG
Sbjct: 206 YYLEEALYIDIKN-----PERHQLYKEGLIYIQDEASMLVSKTLNPKEGDTVLDVCAAPG 260
Query: 274 GKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
GKTT IA L+++ GEV+A D +++ I++ +G+ + T D+
Sbjct: 261 GKTTHIAQLMKNSGEVIAFDLHPHRLELIKENCKRLGITNVKTEVFDS 308
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 427 DRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTC 483
D+VL D PC+ +G+ +P + T + + + Q ++ D + + V+ GG +VYSTC
Sbjct: 320 DKVLADVPCTGIGIIRKKPDIKLKNYTRKEISELIEAQYKILDSSSKYVKKGGFLVYSTC 379
Query: 484 TINPGENE 491
TI EN+
Sbjct: 380 TIGKEENQ 387
>gi|300854445|ref|YP_003779429.1| rRNA subunit cytosine-methyltransferase [Clostridium ljungdahlii
DSM 13528]
gi|300434560|gb|ADK14327.1| predicted rRNA subunit cytosine-methyltransferase [Clostridium
ljungdahlii DSM 13528]
Length = 443
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 65/109 (59%), Gaps = 3/109 (2%)
Query: 219 EGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTA 278
E + ++ + I + P F +G I +Q+ +++ AH +DP++ +LDMC+APGGK+
Sbjct: 212 EAVVINRGSNIEENPLFK---KGYITVQDESAMLVAHIVDPEENMTVLDMCSAPGGKSCH 268
Query: 279 IASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRR 327
+A L+++ G + A D NK+ +++ A M +K I KLDA K V +
Sbjct: 269 MAELMKNTGVIYAYDLHENKLRFVEENANRMDIKNIKCNKLDAEKYVEQ 317
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 44/68 (64%), Gaps = 4/68 (5%)
Query: 427 DRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTC 483
DRVL+D PCS LG+ +P + ++++SL + QR++ A + V+ GG ++YSTC
Sbjct: 323 DRVLIDVPCSGLGIVRKKPEI-KWNKSMKSLNSLINVQRKIMLNASRYVKDGGKLIYSTC 381
Query: 484 TINPGENE 491
T+N ENE
Sbjct: 382 TLNKSENE 389
>gi|315231384|ref|YP_004071820.1| tRNA/RNA cytosine-C5-methylase [Thermococcus barophilus MP]
gi|315184412|gb|ADT84597.1| tRNA/RNA cytosine-C5-methylase [Thermococcus barophilus MP]
Length = 451
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 52/84 (61%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G +Q+L S AH L P+KGERILD+ AAPG KT +A L+ + GE++AVD S ++
Sbjct: 240 QGYFVIQDLASAYVAHVLGPEKGERILDLAAAPGSKTFHVAHLMENTGEIIAVDYSLERL 299
Query: 300 MDIQKLAAEMGLKCITTYKLDALK 323
+++ +G++ + D +K
Sbjct: 300 NKMREKMKILGVRNVKLVHADGMK 323
Score = 45.8 bits (107), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 8/103 (7%)
Query: 397 NMRRMRNGPGRNQCLGGR------AENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEET 450
++ R+ + + LG R A+ K FDR++LDAPCS+ G + +
Sbjct: 295 SLERLNKMREKMKILGVRNVKLVHADGMKFKEKEEFDRIILDAPCSSSGTYRQFPEVKWR 354
Query: 451 I--QSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENE 491
+ ++ + Q+ M A + +R GG + YSTC+I ENE
Sbjct: 355 FDERKIKKVIQVQKAMLRNAYRNLRIGGEMTYSTCSIRIDENE 397
>gi|423395834|ref|ZP_17373035.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG2X1-1]
gi|401653576|gb|EJS71120.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG2X1-1]
Length = 444
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 62/96 (64%), Gaps = 1/96 (1%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G + +Q+ S++ A AL+P +G+ +LD CAAPGGKTT IA L+ G+V+++D +KV
Sbjct: 227 KGFLSIQDESSMLVARALEPDEGDVVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKV 286
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRR-KNESNDE 334
I++ A +GL+ + T LDA K NES D+
Sbjct: 287 RLIKQQADRLGLENVETKALDARKVQEHFANESFDK 322
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F+ SFD++L+DAPCS G+ +P + ++ S R Q + ++ L++ GG
Sbjct: 315 FANESFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSER-LSTIQLAILEKIAPLLKQGGR 373
Query: 478 IVYSTCTINPGENE 491
+VYSTCTI ENE
Sbjct: 374 LVYSTCTIEKIENE 387
>gi|253575778|ref|ZP_04853113.1| ribosomal RNA small subunit methyltransferase B [Paenibacillus sp.
oral taxon 786 str. D14]
gi|251844821|gb|EES72834.1| ribosomal RNA small subunit methyltransferase B [Paenibacillus sp.
oral taxon 786 str. D14]
Length = 506
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 55/96 (57%), Gaps = 2/96 (2%)
Query: 232 LPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVA 291
L S+Y EG I +Q+ S++ A ALDPQ G +LD CAAPGGKT IA ++ G V+A
Sbjct: 276 LTSWYR--EGLISVQDESSMLVAEALDPQPGMNVLDCCAAPGGKTCHIAEIMEGRGRVLA 333
Query: 292 VDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRR 327
D +K I+ A +GL + T DAL+ R
Sbjct: 334 NDIHPHKAKLIEDHAKRLGLDNVDTLSGDALQLAER 369
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 46/74 (62%), Gaps = 4/74 (5%)
Query: 425 SFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYS 481
SFDR+LLD PCS LG+ +P L A++ + + QR + D L++PGG++VYS
Sbjct: 374 SFDRILLDVPCSGLGVIRRKPDLKWAKKP-EDVTEIAGVQRTLLDSVSGLLKPGGLLVYS 432
Query: 482 TCTINPGENEALCA 495
TCTI P EN + A
Sbjct: 433 TCTIEPRENAEMVA 446
>gi|52141623|ref|YP_085206.1| sun protein [Bacillus cereus E33L]
gi|51975092|gb|AAU16642.1| sun protein [Bacillus cereus E33L]
Length = 444
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 86/166 (51%), Gaps = 19/166 (11%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G + +Q+ S++ A AL+P +G+ +LD CAAPGGKTT IA L+ G+V+++D +KV
Sbjct: 227 KGFLSIQDESSMLVARALEPDEGDVVLDSCAAPGGKTTHIAERLKGTGQVMSLDLHAHKV 286
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRR-KNESND----------------EPNMCNSKD 342
I++ A +GL+ + T LDA K NE+ D +P++ KD
Sbjct: 287 RLIKQQAERLGLENVETKALDARKVQEHFANETFDKILVDAPCSGFGVIRRKPDIKLGKD 346
Query: 343 NNYITSQTSDSMKLHKEVPSIAAEG--LNGDKSCKEKVSNEKGVER 386
++ + +++ + +G L EK+ NE+ +ER
Sbjct: 347 KGDSERLSTIQFAILEKIAPLLKQGGRLVYSTCTIEKIENEQVIER 392
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F+ +FD++L+DAPCS G+ +P + ++ S R Q + ++ L++ GG
Sbjct: 315 FANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSER-LSTIQFAILEKIAPLLKQGGR 373
Query: 478 IVYSTCTINPGENE 491
+VYSTCTI ENE
Sbjct: 374 LVYSTCTIEKIENE 387
>gi|282850140|ref|ZP_06259519.1| ribosomal RNA small subunit methyltransferase B [Veillonella
parvula ATCC 17745]
gi|294793653|ref|ZP_06758790.1| ribosomal RNA small subunit methyltransferase B [Veillonella sp.
3_1_44]
gi|416998935|ref|ZP_11939604.1| ribosomal RNA small subunit methyltransferase B [Veillonella
parvula ACS-068-V-Sch12]
gi|282579633|gb|EFB85037.1| ribosomal RNA small subunit methyltransferase B [Veillonella
parvula ATCC 17745]
gi|294455223|gb|EFG23595.1| ribosomal RNA small subunit methyltransferase B [Veillonella sp.
3_1_44]
gi|333977088|gb|EGL77947.1| ribosomal RNA small subunit methyltransferase B [Veillonella
parvula ACS-068-V-Sch12]
Length = 451
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 51/79 (64%)
Query: 238 VLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHN 297
VLEG I + S++ AH +DPQ GE ILD CAAPGGK+ +ASL+ + G +++ D +
Sbjct: 238 VLEGHITFMDKASMLVAHVVDPQPGELILDCCAAPGGKSMHMASLMNNTGAIMSCDIYDH 297
Query: 298 KVMDIQKLAAEMGLKCITT 316
K+ I + A +G+ I+T
Sbjct: 298 KLELINQNAERLGVSIIST 316
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 45/70 (64%), Gaps = 2/70 (2%)
Query: 426 FDRVLLDAPCSALG-LRPRLFAAEETIQSLR-NHGKYQRRMFDQAVQLVRPGGIIVYSTC 483
FDRVL+DAPCS LG L+ +L +SL Q + ++A ++V+ G +VYSTC
Sbjct: 332 FDRVLVDAPCSGLGILQKKLDMRWRKTESLLIELPPLQLEILEKASEMVKVNGYLVYSTC 391
Query: 484 TINPGENEAL 493
T+N GENEA+
Sbjct: 392 TMNSGENEAV 401
>gi|345017809|ref|YP_004820162.1| sun protein [Thermoanaerobacter wiegelii Rt8.B1]
gi|344033152|gb|AEM78878.1| sun protein [Thermoanaerobacter wiegelii Rt8.B1]
Length = 444
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 66/108 (61%), Gaps = 6/108 (5%)
Query: 215 FRASEGIAVDMHNRIFQLPSFYDVL-EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPG 273
+ E + +D+ N P + + EG I++Q+ S++ + L+P++G+ +LD+CAAPG
Sbjct: 206 YYLEEALYIDIKN-----PERHQLYKEGLIYIQDEASMLVSKTLNPKEGDTVLDVCAAPG 260
Query: 274 GKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
GKTT IA L+++ GEV+A D +++ I++ +G+ + T D+
Sbjct: 261 GKTTHIAQLMKNSGEVIAFDLHPHRLELIKENCKRLGITNVKTEVFDS 308
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 427 DRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTC 483
D+VL D PC+ +G+ +P + T + + + Q ++ D + + V+ GG +VYSTC
Sbjct: 320 DKVLADVPCTGIGIIRKKPDIKLKNYTRKEISELIEAQYKILDSSSKYVKKGGFLVYSTC 379
Query: 484 TINPGENE 491
TI EN+
Sbjct: 380 TIGKEENQ 387
>gi|433446078|ref|ZP_20410209.1| ribosomal RNA small subunit methyltransferase B [Anoxybacillus
flavithermus TNO-09.006]
gi|432000823|gb|ELK21715.1| ribosomal RNA small subunit methyltransferase B [Anoxybacillus
flavithermus TNO-09.006]
Length = 446
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 55/85 (64%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
EG I +Q+ S++ A+AL P + + +LD CAAPGGKTT IA + + G VVA+D +KV
Sbjct: 226 EGLITIQDESSMLVAYALSPNETDVVLDCCAAPGGKTTHIAERMNNRGRVVALDIHDHKV 285
Query: 300 MDIQKLAAEMGLKCITTYKLDALKA 324
I++ A +GL I +LD+ +A
Sbjct: 286 KLIEQQAKRLGLSNIEAKQLDSRQA 310
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 8/80 (10%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAA--EETIQSLRNHGKYQRRMFDQAVQLVRPG 475
F+ +FDR+L+DAPCS LG+ +P + A E+ I L N Q + L++ G
Sbjct: 314 FATETFDRILVDAPCSGLGVIRRKPEIKYAKNEKDITQLAN---VQLNILRAVAPLLKRG 370
Query: 476 GIIVYSTCTINPGENEALCA 495
G +VYSTCT++ ENE + A
Sbjct: 371 GTLVYSTCTVDREENEQVIA 390
>gi|206976730|ref|ZP_03237634.1| sun protein [Bacillus cereus H3081.97]
gi|206745040|gb|EDZ56443.1| sun protein [Bacillus cereus H3081.97]
Length = 444
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 86/166 (51%), Gaps = 19/166 (11%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G + +Q+ S++ A AL+P +G+ +LD CAAPGGKTT IA L+ G+V+++D +KV
Sbjct: 227 KGFLSIQDESSMLVARALEPDEGDVVLDSCAAPGGKTTHIAERLKGTGQVMSLDLHAHKV 286
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRR-KNESND----------------EPNMCNSKD 342
I++ A +GL + T LDA K NE+ D +P++ KD
Sbjct: 287 RLIKQQAERLGLGNVETKALDARKVQEHFANETFDKILVDAPCSGFGVIRRKPDIKLGKD 346
Query: 343 NNYITSQTSDSMKLHKEVPSIAAEG--LNGDKSCKEKVSNEKGVER 386
++ + + +++ + +G L EK+ NE+ +ER
Sbjct: 347 KGDSERLSTIQLAILEKIAPLLKQGGRLVYSTCTIEKIENEQVIER 392
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F+ +FD++L+DAPCS G+ +P + ++ S R Q + ++ L++ GG
Sbjct: 315 FANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSER-LSTIQLAILEKIAPLLKQGGR 373
Query: 478 IVYSTCTINPGENE 491
+VYSTCTI ENE
Sbjct: 374 LVYSTCTIEKIENE 387
>gi|42782957|ref|NP_980204.1| sun protein [Bacillus cereus ATCC 10987]
gi|42738884|gb|AAS42812.1| sun protein [Bacillus cereus ATCC 10987]
Length = 444
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 86/166 (51%), Gaps = 19/166 (11%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G + +Q+ S++ A AL+P +G+ +LD CAAPGGKTT IA L+ G+V+++D +KV
Sbjct: 227 KGFLSIQDESSMLVARALEPDEGDVVLDSCAAPGGKTTHIAERLKGTGQVMSLDLHAHKV 286
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRR-KNESND----------------EPNMCNSKD 342
I++ A +GL + T LDA K NE+ D +P++ KD
Sbjct: 287 RLIKQQAERLGLGNVETKALDARKVQEHFANETFDKILVDAPCSGFGVIRRKPDIKLGKD 346
Query: 343 NNYITSQTSDSMKLHKEVPSIAAEG--LNGDKSCKEKVSNEKGVER 386
++ + + +++ + +G L EK+ NE+ +ER
Sbjct: 347 KGDSERLSTIQLAILEKIAPLLKQGGRLVYSTCTIEKIENEQVIER 392
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 5/100 (5%)
Query: 395 RKNMRRMRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGL---RPRLFAAEETI 451
++ R+ G + L R + + F+ +FD++L+DAPCS G+ +P + ++
Sbjct: 290 KQQAERLGLGNVETKALDAR-KVQEHFANETFDKILVDAPCSGFGVIRRKPDIKLGKDKG 348
Query: 452 QSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENE 491
S R Q + ++ L++ GG +VYSTCTI ENE
Sbjct: 349 DSER-LSTIQLAILEKIAPLLKQGGRLVYSTCTIEKIENE 387
>gi|402556013|ref|YP_006597284.1| 16S rRNA methyltransferase B [Bacillus cereus FRI-35]
gi|401797223|gb|AFQ11082.1| 16S rRNA methyltransferase B [Bacillus cereus FRI-35]
Length = 444
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 86/166 (51%), Gaps = 19/166 (11%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G + +Q+ S++ A AL+P +G+ +LD CAAPGGKTT IA L+ G+V+++D +KV
Sbjct: 227 KGFLSIQDESSMLVARALEPDEGDVVLDSCAAPGGKTTHIAERLKGTGQVMSLDLHAHKV 286
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRR-KNESND----------------EPNMCNSKD 342
I++ A +GL + T LDA K NE+ D +P++ KD
Sbjct: 287 RLIKQQAERLGLGNVETKALDARKVQEHFANETFDKILVDAPCSGFGVIRRKPDIKLGKD 346
Query: 343 NNYITSQTSDSMKLHKEVPSIAAEG--LNGDKSCKEKVSNEKGVER 386
++ + + +++ + +G L EK+ NE+ +ER
Sbjct: 347 KGDSERLSTIQLAILEKIAPLLKQGGRLVYSTCTIEKIENEQVIER 392
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 5/100 (5%)
Query: 395 RKNMRRMRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGL---RPRLFAAEETI 451
++ R+ G + L R + + F+ +FD++L+DAPCS G+ +P + ++
Sbjct: 290 KQQAERLGLGNVETKALDAR-KVQEHFANETFDKILVDAPCSGFGVIRRKPDIKLGKDKG 348
Query: 452 QSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENE 491
S R Q + ++ L++ GG +VYSTCTI ENE
Sbjct: 349 DSER-LSTIQLAILEKIAPLLKQGGRLVYSTCTIEKIENE 387
>gi|217961285|ref|YP_002339853.1| sun protein [Bacillus cereus AH187]
gi|222097310|ref|YP_002531367.1| sun protein [Bacillus cereus Q1]
gi|375285788|ref|YP_005106227.1| sun protein [Bacillus cereus NC7401]
gi|423353567|ref|ZP_17331194.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
IS075]
gi|423374338|ref|ZP_17351676.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AND1407]
gi|423567240|ref|ZP_17543487.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
MSX-A12]
gi|217064955|gb|ACJ79205.1| sun protein [Bacillus cereus AH187]
gi|221241368|gb|ACM14078.1| sun protein [Bacillus cereus Q1]
gi|358354315|dbj|BAL19487.1| sun protein [Bacillus cereus NC7401]
gi|401089380|gb|EJP97551.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
IS075]
gi|401094250|gb|EJQ02332.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AND1407]
gi|401214328|gb|EJR21058.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
MSX-A12]
Length = 444
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 86/166 (51%), Gaps = 19/166 (11%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G + +Q+ S++ A AL+P +G+ +LD CAAPGGKTT IA L+ G+V+++D +KV
Sbjct: 227 KGFLSIQDESSMLVARALEPDEGDVVLDSCAAPGGKTTHIAERLKGTGQVMSLDLHAHKV 286
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRR-KNESND----------------EPNMCNSKD 342
I++ A +GL + T LDA K NE+ D +P++ KD
Sbjct: 287 RLIKQQAERLGLGNVETKALDARKVQEHFANETFDKILVDAPCSGFGVIRRKPDIKLGKD 346
Query: 343 NNYITSQTSDSMKLHKEVPSIAAEG--LNGDKSCKEKVSNEKGVER 386
++ + + +++ + +G L EK+ NE+ +ER
Sbjct: 347 KGDSERLSTIQLAILEKIAPLLKQGGRLVYSTCTIEKIENEQVIER 392
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F+ +FD++L+DAPCS G+ +P + ++ S R Q + ++ L++ GG
Sbjct: 315 FANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSER-LSTIQLAILEKIAPLLKQGGR 373
Query: 478 IVYSTCTINPGENE 491
+VYSTCTI ENE
Sbjct: 374 LVYSTCTIEKIENE 387
>gi|423574529|ref|ZP_17550648.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
MSX-D12]
gi|423604508|ref|ZP_17580401.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD102]
gi|401212054|gb|EJR18800.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
MSX-D12]
gi|401245128|gb|EJR51486.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD102]
Length = 444
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 86/166 (51%), Gaps = 19/166 (11%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G + +Q+ S++ A AL+P +G+ +LD CAAPGGKTT IA L+ G+V+++D +KV
Sbjct: 227 KGFLSIQDESSMLVARALEPDEGDVVLDSCAAPGGKTTHIAERLKGTGQVMSLDLHAHKV 286
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRR-KNESND----------------EPNMCNSKD 342
I++ A +GL + T LDA K NE+ D +P++ KD
Sbjct: 287 RLIKQQAERLGLGNVETKALDARKVQEHFANETFDKILVDAPCSGFGVIRRKPDIKLGKD 346
Query: 343 NNYITSQTSDSMKLHKEVPSIAAEG--LNGDKSCKEKVSNEKGVER 386
++ + + +++ + +G L EK+ NE+ +ER
Sbjct: 347 KGDSERLSTIQLAILEKIAPLLKQGGRLVYSTCTIEKIENEQVIER 392
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 5/100 (5%)
Query: 395 RKNMRRMRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGL---RPRLFAAEETI 451
++ R+ G + L R + + F+ +FD++L+DAPCS G+ +P + ++
Sbjct: 290 KQQAERLGLGNVETKALDAR-KVQEHFANETFDKILVDAPCSGFGVIRRKPDIKLGKDKG 348
Query: 452 QSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENE 491
S R Q + ++ L++ GG +VYSTCTI ENE
Sbjct: 349 DSER-LSTIQLAILEKIAPLLKQGGRLVYSTCTIEKIENE 387
>gi|384181679|ref|YP_005567441.1| 16S rRNA methyltransferase B [Bacillus thuringiensis serovar
finitimus YBT-020]
gi|324327763|gb|ADY23023.1| 16S rRNA methyltransferase B [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 444
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 86/166 (51%), Gaps = 19/166 (11%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G + +Q+ S++ A AL+P +G+ +LD CAAPGGKTT IA L+ G+V+++D +KV
Sbjct: 227 KGFLSIQDESSMLVARALEPDEGDVVLDSCAAPGGKTTHIAERLKGTGQVMSLDLHAHKV 286
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRR-KNESND----------------EPNMCNSKD 342
I++ A +GL + T LDA K NE+ D +P++ KD
Sbjct: 287 RLIKQQAERLGLGNVETKALDARKVQEHFANETFDKILVDAPCSGFGVIRRKPDIKLGKD 346
Query: 343 NNYITSQTSDSMKLHKEVPSIAAEG--LNGDKSCKEKVSNEKGVER 386
++ + + +++ + +G L EK+ NE+ +ER
Sbjct: 347 KGDSERLSTIQLAILEKIAPLLKQGGRLVYSTCTIEKIENEQVIER 392
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 5/100 (5%)
Query: 395 RKNMRRMRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGL---RPRLFAAEETI 451
++ R+ G + L R + + F+ +FD++L+DAPCS G+ +P + ++
Sbjct: 290 KQQAERLGLGNVETKALDAR-KVQEHFANETFDKILVDAPCSGFGVIRRKPDIKLGKDKG 348
Query: 452 QSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENE 491
S R Q + ++ L++ GG +VYSTCTI ENE
Sbjct: 349 DSER-LSTIQLAILEKIAPLLKQGGRLVYSTCTIEKIENE 387
>gi|313893390|ref|ZP_07826962.1| ribosomal RNA small subunit methyltransferase B [Veillonella sp.
oral taxon 158 str. F0412]
gi|313442031|gb|EFR60451.1| ribosomal RNA small subunit methyltransferase B [Veillonella sp.
oral taxon 158 str. F0412]
Length = 451
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 52/79 (65%)
Query: 238 VLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHN 297
V+EG I + S++ AH +DPQ GERILD CAAPGGK+ +ASL+ + G +++ D +
Sbjct: 238 VIEGHITFMDKASMLVAHVVDPQPGERILDCCAAPGGKSMHMASLMNNTGAIMSCDIYDH 297
Query: 298 KVMDIQKLAAEMGLKCITT 316
K+ + + A +G+ ++T
Sbjct: 298 KLDLMNQNAERLGVSIVST 316
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 426 FDRVLLDAPCSALG-LRPRLFAAEETIQSLRNH-GKYQRRMFDQAVQLVRPGGIIVYSTC 483
FDRVL+DAPCS LG L+ +L + L N Q + ++A ++V+ G +VYSTC
Sbjct: 332 FDRVLVDAPCSGLGILQKKLDMRWRKSEDLLNELPPLQLEILEKASEMVKVNGYLVYSTC 391
Query: 484 TINPGENE 491
TIN GENE
Sbjct: 392 TINSGENE 399
>gi|310828894|ref|YP_003961251.1| hypothetical protein [Eubacterium limosum KIST612]
gi|308740628|gb|ADO38288.1| hypothetical protein ELI_3326 [Eubacterium limosum KIST612]
Length = 441
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 425 SFDRVLLDAPCSALGLRPRLFAAEETI--QSLRNHGKYQRRMFDQAVQLVRPGGIIVYST 482
+FDR+LLDAPCS LG+ R TI ++ + + QR++ D AVQ ++PGG +VY T
Sbjct: 327 AFDRILLDAPCSGLGIIRRKPEIRYTITKKARKELVRIQRQLLDHAVQYLKPGGTLVYCT 386
Query: 483 CTINPGENE 491
CT+N ENE
Sbjct: 387 CTVNSDENE 395
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 52/80 (65%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G +Q+ ++ A L P+K +R+LDMCAAPGGKTT ++ ++ +EG ++A D +++
Sbjct: 237 GCFMIQDQGAMKAARLLGPEKTDRVLDMCAAPGGKTTHLSQIMENEGTIIARDIFDSRLK 296
Query: 301 DIQKLAAEMGLKCITTYKLD 320
I++ AA +G+ I T K D
Sbjct: 297 LIEETAARLGICNIETEKTD 316
>gi|296121363|ref|YP_003629141.1| sun protein [Planctomyces limnophilus DSM 3776]
gi|296013703|gb|ADG66942.1| sun protein [Planctomyces limnophilus DSM 3776]
Length = 471
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 55/92 (59%), Gaps = 3/92 (3%)
Query: 228 RIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEG 287
RI LP F EGE +Q+L + A L+PQ GE +LD+CAAPG KT +A L++++G
Sbjct: 260 RISTLPGFP---EGEFSVQDLSAQHAARRLNPQPGEVVLDLCAAPGSKTCHMAELMQNQG 316
Query: 288 EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKL 319
E++A D ++ + + A +GL I T +
Sbjct: 317 EIIAADTHGGRIRQVYENAERLGLSIIRTITI 348
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 49/104 (47%), Gaps = 11/104 (10%)
Query: 396 KNMRRMRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCS---ALGLRP--RLFAAEET 450
+N R+ R +G R EN FD+VL D PCS LG RP R +
Sbjct: 333 ENAERLGLSIIRTITIGPRGENLPSME---FDKVLADVPCSNTGVLGKRPEARWKYSPAH 389
Query: 451 IQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEALC 494
+ LR + Q + A VR GG I+YSTC+I P ENE +
Sbjct: 390 LDELR---EMQATILRTAAGKVRIGGRILYSTCSIEPLENEEIV 430
>gi|158338705|ref|YP_001519882.1| ribosomal RNA small subunit methyltransferase B [Acaryochloris
marina MBIC11017]
gi|158308946|gb|ABW30563.1| ribosomal RNA small subunit methyltransferase B [Acaryochloris
marina MBIC11017]
Length = 443
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 55/93 (59%), Gaps = 3/93 (3%)
Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
I QLP F EG +Q + + H L+PQ G LD+CAAPGGKTT IA L+ ++GE
Sbjct: 225 IPQLPGFQ---EGLWTVQEASAQLVGHLLNPQPGAIALDVCAAPGGKTTHIAELMENQGE 281
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
V A DR+ +++ + + +G+ +T + D+
Sbjct: 282 VWACDRTPSRLRKLNQNTQRLGIDTVTIWTGDS 314
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 103/243 (42%), Gaps = 28/243 (11%)
Query: 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKL 319
++ E++ D C P I SL D V +++ +TT L
Sbjct: 166 EETEKLCDYCNQPPHIDLRINSLKTDRESV----------------RSQLASAGVTTTPL 209
Query: 320 DAL-KAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLN-----GDKS 373
L +A+R + +S P + ++ + + S + H P A L+ G K+
Sbjct: 210 PHLPQALRIEGKSGPIPQLPGFQEGLWTVQEASAQLVGHLLNPQPGAIALDVCAAPGGKT 269
Query: 374 CK--EKVSNEKGVERTYVSKADTRK-NMRRMRNGPGRNQCLGGRAENSKGFSPNSFDRVL 430
E + N+ V + + RK N R G G + P + D VL
Sbjct: 270 THIAELMENQGEVWACDRTPSRLRKLNQNTQRLGIDTVTIWTGDSRQLSNHIPLA-DYVL 328
Query: 431 LDAPCSALGLRPRLFAA--EETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPG 488
+DAPCS LG R A ++T ++++ Q + + + V+PGGI++YSTCT++P
Sbjct: 329 VDAPCSGLGTLHRHADARWQQTPDNIQDLSTLQLDLLLNSARRVKPGGILLYSTCTLHPL 388
Query: 489 ENE 491
ENE
Sbjct: 389 ENE 391
>gi|336179788|ref|YP_004585163.1| Fmu (Sun) domain-containing protein [Frankia symbiont of Datisca
glomerata]
gi|334860768|gb|AEH11242.1| Fmu (Sun) domain protein [Frankia symbiont of Datisca glomerata]
Length = 326
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 48/81 (59%), Gaps = 3/81 (3%)
Query: 415 AENSKGFSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQL 471
A+ + F FDRVLLDA CS GL R T Q + ++G QR+M A +L
Sbjct: 177 AQYADKFITERFDRVLLDAQCSGEGLVDLRSSAALRYWTEQRVIDYGWLQRKMLVAACRL 236
Query: 472 VRPGGIIVYSTCTINPGENEA 492
+RPGG++VYSTCT P ENEA
Sbjct: 237 LRPGGVLVYSTCTFGPEENEA 257
Score = 40.4 bits (93), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 36/57 (63%), Gaps = 4/57 (7%)
Query: 241 GEIFLQNLPSIVTAHALDPQKG----ERILDMCAAPGGKTTAIASLLRDEGEVVAVD 293
G ++QN+ S+V A AL P E I+D+CAAPGGKT IA+L+ +E + A D
Sbjct: 93 GHAYIQNISSLVPALALAPAPAPAPDESIIDLCAAPGGKTAHIAALVGNEARLWAND 149
>gi|389847107|ref|YP_006349346.1| tRNA and rRNA cytosine-C5-methylase [Haloferax mediterranei ATCC
33500]
gi|448614944|ref|ZP_21663972.1| tRNA and rRNA cytosine-C5-methylase [Haloferax mediterranei ATCC
33500]
gi|388244413|gb|AFK19359.1| tRNA and rRNA cytosine-C5-methylase [Haloferax mediterranei ATCC
33500]
gi|445753031|gb|EMA04450.1| tRNA and rRNA cytosine-C5-methylase [Haloferax mediterranei ATCC
33500]
Length = 313
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 61/115 (53%), Gaps = 16/115 (13%)
Query: 219 EGIA---VDMHNRIFQL---------PSFYDVLEGEIFLQNLPSIVTAHALDPQKGERIL 266
EG+A D H I +L P F+ L G+ + LP+I ALDPQ GERI
Sbjct: 48 EGVAYEPTDWHPGILKLEESSPGTNWPYFHGWLHGQEEVSALPAI----ALDPQPGERIW 103
Query: 267 DMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
D CAAPG KTT IA+++ DEG +V D + ++ ++ A +G+ + DA
Sbjct: 104 DTCAAPGSKTTQIAAMMDDEGVLVGNDNNLGRLSALRHNAERLGVTNLVVSNQDA 158
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 49/86 (56%), Gaps = 5/86 (5%)
Query: 411 LGGRAENSKGFSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQ 467
G R G S FDRVL+DAPCS G P + E T+ + + Q+ + +
Sbjct: 166 FGERTPEEPG-SFEQFDRVLVDAPCSCEGTCRKNPDVLD-EWTMNHVASVAGIQKGILRR 223
Query: 468 AVQLVRPGGIIVYSTCTINPGENEAL 493
AVQ+ +PGG +VYSTCT+ P ENEA+
Sbjct: 224 AVQVTKPGGSVVYSTCTLAPEENEAV 249
>gi|229162801|ref|ZP_04290758.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
R309803]
gi|228620683|gb|EEK77552.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
R309803]
Length = 360
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 87/166 (52%), Gaps = 19/166 (11%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G + +Q+ S++ A AL+P +G+ +LD CAAPGGKTT IA L+ G+V+++D +KV
Sbjct: 143 KGFLSIQDESSMLVARALEPNEGDVVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKV 202
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRR-KNESND----------------EPNMCNSKD 342
I++ A +GL+ + T LDA K NE+ D +P++ KD
Sbjct: 203 RLIKQQADRLGLENVETKALDARKVQEHFANETFDKILVDAPCSGFGVIRRKPDIKLGKD 262
Query: 343 NNYITSQTSDSMKLHKEVPSIAAEG--LNGDKSCKEKVSNEKGVER 386
++ + + +++ + +G L EK+ NE+ +ER
Sbjct: 263 KGDSERLSTIQLAILEKIAPLLKQGGRLVYSTCTIEKIENEQVIER 308
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F+ +FD++L+DAPCS G+ +P + ++ S R Q + ++ L++ GG
Sbjct: 231 FANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSER-LSTIQLAILEKIAPLLKQGGR 289
Query: 478 IVYSTCTINPGENE 491
+VYSTCTI ENE
Sbjct: 290 LVYSTCTIEKIENE 303
>gi|167040389|ref|YP_001663374.1| sun protein [Thermoanaerobacter sp. X514]
gi|256752273|ref|ZP_05493136.1| sun protein [Thermoanaerobacter ethanolicus CCSD1]
gi|300914473|ref|ZP_07131789.1| sun protein [Thermoanaerobacter sp. X561]
gi|307724291|ref|YP_003904042.1| sun protein [Thermoanaerobacter sp. X513]
gi|166854629|gb|ABY93038.1| sun protein [Thermoanaerobacter sp. X514]
gi|256748841|gb|EEU61882.1| sun protein [Thermoanaerobacter ethanolicus CCSD1]
gi|300889408|gb|EFK84554.1| sun protein [Thermoanaerobacter sp. X561]
gi|307581352|gb|ADN54751.1| sun protein [Thermoanaerobacter sp. X513]
Length = 444
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 66/108 (61%), Gaps = 6/108 (5%)
Query: 215 FRASEGIAVDMHNRIFQLPSFYDVL-EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPG 273
+ E + +D+ N P + + EG I++Q+ S++ + L+P++GE ++D+CAAPG
Sbjct: 206 YYLEEALYIDIKN-----PESHQLYKEGFIYIQDEASMLVSKILNPKEGETVIDVCAAPG 260
Query: 274 GKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
GKTT IA L+++ G+VVA D +++ I++ +G+ + T D+
Sbjct: 261 GKTTHIAQLMKNNGKVVAFDLHPHRLELIKENCKRLGITNVKTEAFDS 308
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 427 DRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTC 483
D+VL D PC+ +G+ +P + T + + + Q ++ D + + V+ GG +VYSTC
Sbjct: 320 DKVLADVPCTGIGIIRKKPDIKLKNYTRKEISELIETQYKILDSSSKYVKKGGFLVYSTC 379
Query: 484 TINPGENE 491
TI EN+
Sbjct: 380 TIGKEENQ 387
>gi|282895327|ref|ZP_06303529.1| Fmu, rRNA SAM-dependent methyltransferase [Raphidiopsis brookii D9]
gi|281199633|gb|EFA74493.1| Fmu, rRNA SAM-dependent methyltransferase [Raphidiopsis brookii D9]
Length = 465
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 70/144 (48%), Gaps = 26/144 (18%)
Query: 201 YIGQGTAMMSRAGIFRAS----------EGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPS 250
++ Q + R I RAS GI VD RI LP ++ +QNLP
Sbjct: 195 WMNQTPTIDLRVNILRASLEMVESVFKKAGILVD---RIPHLPQGLRLVNPAGPIQNLPG 251
Query: 251 I-------------VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHN 297
+ H LDP+ GE I+D+CAAPGGKTT IA L+ D G++ A DR+ +
Sbjct: 252 FTEGWWCIQDAAAQLVGHLLDPKPGEVIIDVCAAPGGKTTHIAELMGDNGKIYACDRTPS 311
Query: 298 KVMDIQKLAAEMGLKCITTYKLDA 321
++ + + A + L+ I + D+
Sbjct: 312 RLRKLSENAQRLRLQSIEIFPGDS 335
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 427 DRVLLDAPCSALGLRPRLFAAE--ETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCT 484
DRVLLDAPCS LG R A + S+ + Q+ + + V+PGG++VY+TCT
Sbjct: 346 DRVLLDAPCSGLGTMHRHADARWRQDPSSVGDLAHIQKELISHTAKFVKPGGVLVYATCT 405
Query: 485 INPGENEAL 493
++P ENE L
Sbjct: 406 LHPQENEDL 414
>gi|229140511|ref|ZP_04269066.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus
BDRD-ST26]
gi|228643072|gb|EEK99348.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus
BDRD-ST26]
Length = 360
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 86/166 (51%), Gaps = 19/166 (11%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G + +Q+ S++ A AL+P +G+ +LD CAAPGGKTT IA L+ G+V+++D +KV
Sbjct: 143 KGFLSIQDESSMLVARALEPDEGDVVLDSCAAPGGKTTHIAERLKGTGQVMSLDLHAHKV 202
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRR-KNESND----------------EPNMCNSKD 342
I++ A +GL + T LDA K NE+ D +P++ KD
Sbjct: 203 RLIKQQAERLGLGNVETKALDARKVQEHFANETFDKILVDAPCSGFGVIRRKPDIKLGKD 262
Query: 343 NNYITSQTSDSMKLHKEVPSIAAEG--LNGDKSCKEKVSNEKGVER 386
++ + + +++ + +G L EK+ NE+ +ER
Sbjct: 263 KGDSERLSTIQLAILEKIAPLLKQGGRLVYSTCTIEKIENEQVIER 308
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F+ +FD++L+DAPCS G+ +P + ++ S R Q + ++ L++ GG
Sbjct: 231 FANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSER-LSTIQLAILEKIAPLLKQGGR 289
Query: 478 IVYSTCTINPGENE 491
+VYSTCTI ENE
Sbjct: 290 LVYSTCTIEKIENE 303
>gi|82596191|ref|XP_726160.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23481450|gb|EAA17725.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 647
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 47/69 (68%), Gaps = 1/69 (1%)
Query: 426 FDRVLLDAPCSALGL-RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCT 484
FD++LLDAPCS G+ A +TI+ +R+ + QR++ + A+ LV+ GGI++YSTC+
Sbjct: 399 FDKILLDAPCSGTGVVNKNKNARRKTIKEIRDLAQKQRKLLNNAIDLVKNGGIVIYSTCS 458
Query: 485 INPGENEAL 493
I ENE +
Sbjct: 459 ITVEENEQV 467
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 51/90 (56%)
Query: 234 SFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVD 293
S + L G +Q+ S++ L+ ++ E +LDMCAAPGGK T I ++ +++G V A D
Sbjct: 301 SLNEYLYGYYIIQSSSSLIPVLELNVKENELVLDMCAAPGGKCTFICTIQKNKGIVYAND 360
Query: 294 RSHNKVMDIQKLAAEMGLKCITTYKLDALK 323
+ + I+ AA MG+ + D+LK
Sbjct: 361 INKLRCKAIEAHAARMGINNLIVTSFDSLK 390
>gi|229111336|ref|ZP_04240889.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
Rock1-15]
gi|228672112|gb|EEL27403.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
Rock1-15]
Length = 429
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 61/96 (63%), Gaps = 1/96 (1%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G + +Q+ S++ A AL+P G+ +LD CAAPGGKTT IA L+ G+V+++D +KV
Sbjct: 212 KGFLSIQDESSMLVARALEPNTGDAVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKV 271
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRR-KNESNDE 334
I++ A +GL+ + T LDA K NE+ D+
Sbjct: 272 RLIKQQAERLGLENVETKALDARKVQEHFSNETFDK 307
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
FS +FD++L+DAPCS G+ +P + ++ S R Q + ++ L++ GG
Sbjct: 300 FSNETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSER-LSTIQIAILEKIAPLLKQGGR 358
Query: 478 IVYSTCTINPGENE 491
+VYSTCTI ENE
Sbjct: 359 LVYSTCTIEKIENE 372
>gi|428311848|ref|YP_007122825.1| ribosomal RNA small subunit methyltransferase RsmB [Microcoleus sp.
PCC 7113]
gi|428253460|gb|AFZ19419.1| ribosomal RNA small subunit methyltransferase RsmB [Microcoleus sp.
PCC 7113]
Length = 485
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 67/134 (50%), Gaps = 20/134 (14%)
Query: 201 YIGQGTAMMSRAGIFRAS-EGIAVDMHN------RIFQLPSFYDVLEGEIFLQNLPSI-- 251
++ Q + R R S E + V M + RI QLP V+ G +Q LP
Sbjct: 213 WLNQTPTIDLRVNPMRVSIEEVEVAMQSTGVEVRRIPQLPQALRVMGGAGNIQQLPGFRE 272
Query: 252 -----------VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
+ +H L+PQ GE ++D CAAPGGKTT IA L+ D+G + A DR+ +++
Sbjct: 273 GWWTVQDSSAQLVSHLLNPQAGEVVIDACAAPGGKTTHIAELMGDQGTIWACDRAASRLK 332
Query: 301 DIQKLAAEMGLKCI 314
+Q+ + L+ I
Sbjct: 333 KLQENTQRLQLQSI 346
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 50/84 (59%), Gaps = 10/84 (11%)
Query: 417 NSKGFS--PNSFDRVLLDAPCSALGL---RP--RLFAAEETIQSLRNHGKYQRRMFDQAV 469
+S+ FS +S +RVLLDAPCS LG RP R T+Q L Q + +QA
Sbjct: 352 DSRHFSQFTDSANRVLLDAPCSGLGTLHRRPDIRWRVTPATVQEL---SVLQGELLEQAA 408
Query: 470 QLVRPGGIIVYSTCTINPGENEAL 493
V+P GI+VY+TCT++P ENE +
Sbjct: 409 TWVKPEGILVYATCTLHPLENEGV 432
>gi|289435165|ref|YP_003465037.1| sun protein [Listeria seeligeri serovar 1/2b str. SLCC3954]
gi|289171409|emb|CBH27953.1| sun protein [Listeria seeligeri serovar 1/2b str. SLCC3954]
Length = 446
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 57/99 (57%), Gaps = 5/99 (5%)
Query: 399 RRMRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLR 455
+R++ R L R N+ F+P +FDR+L+DAPCS G+ +P + A+ T + +
Sbjct: 296 KRLQLLNIRTAHLDARTANTM-FAPETFDRILVDAPCSGFGVLRRKPDIKYAK-TEKDIH 353
Query: 456 NHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEALC 494
+ Q + D QLV+ GI+VYSTCTI+ ENE +
Sbjct: 354 KLAEIQLAILDDVSQLVKENGILVYSTCTIDKEENETVL 392
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 43/82 (52%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G+ +Q+ S++ +AL + +LD CAAPGGKTT IA + G V A+D K
Sbjct: 229 DGKCSIQDESSMLATYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKT 288
Query: 300 MDIQKLAAEMGLKCITTYKLDA 321
I A + L I T LDA
Sbjct: 289 KLIDHAAKRLQLLNIRTAHLDA 310
>gi|402574141|ref|YP_006623484.1| NusB antitermination factor [Desulfosporosinus meridiei DSM 13257]
gi|402255338|gb|AFQ45613.1| NusB antitermination factor [Desulfosporosinus meridiei DSM 13257]
Length = 454
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 72/128 (56%), Gaps = 17/128 (13%)
Query: 201 YIGQGTAMMSRAGIFR--ASEGIAVDM------------HNRIFQLPSFYDVLEGEIFLQ 246
+I T +SR + SEGI+V++ + QL SF EG +Q
Sbjct: 181 WIRTNTLKISREALKERLISEGISVELGLLVPESLKIQDFGALEQLASFQ---EGLFTVQ 237
Query: 247 NLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLA 306
+ S + AH +DP+ G+ +LD C+APGGK+T +A L++++GE+ A D ++K+ I +LA
Sbjct: 238 DESSQLVAHVVDPKPGQSVLDTCSAPGGKSTHLAQLMQNKGEIQAFDIHNHKLELIGQLA 297
Query: 307 AEMGLKCI 314
++G+ I
Sbjct: 298 TKLGITII 305
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 413 GRAENSKGFSPNSFDRVLLDAPCSALG-LRPRL---FAAEETIQSLRNHGKYQRRMFDQA 468
G A + G S DRVL+D PCS LG LR R + EE Q L Q + ++A
Sbjct: 310 GDARDLPGIRLESQDRVLVDVPCSGLGVLRRRADLRWQKEE--QGLLELPSLQFAILERA 367
Query: 469 VQLVRPGGIIVYSTCTINPGENEALC 494
V+ GG +VYSTCTI P EN L
Sbjct: 368 ASCVKDGGTLVYSTCTIEPEENFELV 393
>gi|229197976|ref|ZP_04324690.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus m1293]
gi|228585455|gb|EEK43559.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus m1293]
Length = 360
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 86/166 (51%), Gaps = 19/166 (11%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G + +Q+ S++ A AL+P +G+ +LD CAAPGGKTT IA L+ G+V+++D +KV
Sbjct: 143 KGFLSIQDESSMLVARALEPDEGDVVLDSCAAPGGKTTHIAERLKGTGQVMSLDLHAHKV 202
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRR-KNESND----------------EPNMCNSKD 342
I++ A +GL + T LDA K NE+ D +P++ KD
Sbjct: 203 RLIKQQAERLGLGNVETKALDARKVQEHFANETFDKILVDAPCSGFGVIRRKPDIKLGKD 262
Query: 343 NNYITSQTSDSMKLHKEVPSIAAEG--LNGDKSCKEKVSNEKGVER 386
++ + + +++ + +G L EK+ NE+ +ER
Sbjct: 263 KGDSERLSTIQLAILEKIAPLLKQGGRLVYSTCTIEKIENEQVIER 308
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 5/100 (5%)
Query: 395 RKNMRRMRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGL---RPRLFAAEETI 451
++ R+ G + L R + + F+ +FD++L+DAPCS G+ +P + ++
Sbjct: 206 KQQAERLGLGNVETKALDAR-KVQEHFANETFDKILVDAPCSGFGVIRRKPDIKLGKDKG 264
Query: 452 QSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENE 491
S R Q + ++ L++ GG +VYSTCTI ENE
Sbjct: 265 DSERL-STIQLAILEKIAPLLKQGGRLVYSTCTIEKIENE 303
>gi|167037728|ref|YP_001665306.1| sun protein [Thermoanaerobacter pseudethanolicus ATCC 33223]
gi|320116143|ref|YP_004186302.1| sun protein [Thermoanaerobacter brockii subsp. finnii Ako-1]
gi|166856562|gb|ABY94970.1| sun protein [Thermoanaerobacter pseudethanolicus ATCC 33223]
gi|319929234|gb|ADV79919.1| sun protein [Thermoanaerobacter brockii subsp. finnii Ako-1]
Length = 444
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 61/95 (64%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
EG I++Q+ S++ + L+P++GE ++D+CAAPGGKTT IA L+++ G+VVA D +++
Sbjct: 227 EGFIYIQDEASMLVSKILNPKEGETVIDVCAAPGGKTTHIAQLMKNNGKVVAFDLHPHRL 286
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDE 334
I++ +G+ + T D+ ++ E D+
Sbjct: 287 ELIKENCKRLGITNVKTEAFDSTFVNKKYLEKADK 321
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 427 DRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTC 483
D+VL D PC+ +G+ +P + T + + + Q ++ D + + V+ GG +VYSTC
Sbjct: 320 DKVLADVPCTGIGIIRKKPDIKLKNYTRKEISELIETQYKILDSSSKYVKKGGFLVYSTC 379
Query: 484 TINPGENE 491
TI EN+
Sbjct: 380 TIGKEENQ 387
>gi|423615874|ref|ZP_17591708.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD115]
gi|401260411|gb|EJR66584.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD115]
Length = 444
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 56/85 (65%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G + +Q+ S++ A AL+P +GE +LD CAAPGGKTT IA L+ G+V+++D +KV
Sbjct: 227 KGFLSIQDESSMLVARALEPNEGETVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKV 286
Query: 300 MDIQKLAAEMGLKCITTYKLDALKA 324
I++ A +GL+ + LDA K
Sbjct: 287 RLIKQQAERLGLENVEIKALDARKV 311
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F+ +FD++L+DAPCS G+ +P + ++ S R Q + ++ L++ GG
Sbjct: 315 FANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSER-LSTIQLAILEKIAPLLKQGGR 373
Query: 478 IVYSTCTINPGENE 491
+VYSTCTI ENE
Sbjct: 374 LVYSTCTIEKIENE 387
>gi|253741386|gb|EES98257.1| Nucleolar protein NOP2 [Giardia intestinalis ATCC 50581]
Length = 497
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 52/85 (61%)
Query: 237 DVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296
+ L G +Q+ S + AL+P+ GERILDM AAPGGKTT + +L++D G ++A D +
Sbjct: 269 EYLRGYYMIQDAASFLPPMALNPKPGERILDMSAAPGGKTTHLGALMQDSGMILANDMNR 328
Query: 297 NKVMDIQKLAAEMGLKCITTYKLDA 321
+++ +Q A MG+ C DA
Sbjct: 329 DRIPALQANLARMGVTCAVISCSDA 353
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 425 SFDRVLLDAPCSALGL--RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLV--RPGG--II 478
+FDRVLLDAPCS LG+ + A T + + Q+ + + A L+ P ++
Sbjct: 362 NFDRVLLDAPCSGLGVVSKDASIKANRTFEDIHRLSHLQKELLNHAFDLLAKHPSNPRLV 421
Query: 479 VYSTCTINPGENEAL 493
YSTC++ ENEA+
Sbjct: 422 CYSTCSVTLSENEAV 436
>gi|359403639|ref|ZP_09196543.1| putative rRNA small subunit methyltransferase B [Spiroplasma
melliferum KC3]
gi|438119635|ref|ZP_20871755.1| RNA-binding Sun protein [Spiroplasma melliferum IPMB4A]
gi|358832870|gb|EHK51974.1| putative rRNA small subunit methyltransferase B [Spiroplasma
melliferum KC3]
gi|434155383|gb|ELL44336.1| RNA-binding Sun protein [Spiroplasma melliferum IPMB4A]
Length = 423
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 55/84 (65%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G IF+Q+ S+ A LDPQ+ +R+LDMC+APGGK T ++ ++ ++G + A D S K+
Sbjct: 224 KGLIFIQDEMSMRIAEILDPQETDRVLDMCSAPGGKATHLSQIMNNKGIIDAYDISEKKI 283
Query: 300 MDIQKLAAEMGLKCITTYKLDALK 323
I+ A+ +G+ I + LDA K
Sbjct: 284 NLIKMNASRLGITNIYPHLLDARK 307
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 44/68 (64%), Gaps = 3/68 (4%)
Query: 426 FDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYST 482
+D++L DAPCS LG+ +P + T Q L N + Q ++ ++A QL++PGGI+VYST
Sbjct: 314 YDKILCDAPCSGLGVIKRKPEIKYHTLTNQELANLVEIQEQLLEKAYQLLKPGGILVYST 373
Query: 483 CTINPGEN 490
CT EN
Sbjct: 374 CTFGGYEN 381
>gi|228954142|ref|ZP_04116170.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis serovar kurstaki str. T03a001]
gi|229071363|ref|ZP_04204586.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
F65185]
gi|229081120|ref|ZP_04213630.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
Rock4-2]
gi|228702164|gb|EEL54640.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
Rock4-2]
gi|228711817|gb|EEL63769.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
F65185]
gi|228805462|gb|EEM52053.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis serovar kurstaki str. T03a001]
Length = 429
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 61/96 (63%), Gaps = 1/96 (1%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G + +Q+ S++ A AL+P G+ +LD CAAPGGKTT IA L+ G+V+++D +KV
Sbjct: 212 KGFLSIQDESSMLVARALEPNTGDAVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKV 271
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRR-KNESNDE 334
I++ A +GL+ + T LDA K NE+ D+
Sbjct: 272 RLIKQQAERLGLENVETKALDARKVQEHFANETFDK 307
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F+ +FD++L+DAPCS G+ +P + ++ S R Q + ++ L++ GG
Sbjct: 300 FANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSER-LSTIQIAILEKIAPLLKQGGR 358
Query: 478 IVYSTCTINPGENE 491
+VYSTCTI ENE
Sbjct: 359 LVYSTCTIEKIENE 372
>gi|448436000|ref|ZP_21587016.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum
tebenquichense DSM 14210]
gi|445683160|gb|ELZ35563.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum
tebenquichense DSM 14210]
Length = 321
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 56/105 (53%), Gaps = 5/105 (4%)
Query: 222 AVDMHNRIFQLPS-----FYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKT 276
AVD H+ +F+LP + + G Q S++ ALDP+ GER+ D CAAPG KT
Sbjct: 54 AVDWHDGLFRLPDGNPGGNWPYVHGWTHGQEEVSVLPGLALDPRPGERVWDACAAPGSKT 113
Query: 277 TAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
T IA + DEG VVA D + ++ ++ A +G+ DA
Sbjct: 114 TQIADAMGDEGTVVANDNNLGRLSALRHNAERLGITNTVVTNQDA 158
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 45/78 (57%), Gaps = 4/78 (5%)
Query: 419 KGFSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPG 475
K + + FDR L+DAPCS G P + + T+ + Q+ + +AVQ RPG
Sbjct: 164 KPLAFDEFDRALVDAPCSCEGTCRKNPDVLD-QWTLDHVHAVAGIQKGVLARAVQATRPG 222
Query: 476 GIIVYSTCTINPGENEAL 493
G++VYSTCT P ENEA+
Sbjct: 223 GVVVYSTCTFAPEENEAV 240
>gi|407407219|gb|EKF31135.1| nucleolar protein, putative [Trypanosoma cruzi marinkellei]
Length = 574
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 426 FDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGG--IIVYSTC 483
F +LLD PC+ +GLRP+L + T Q +R+ YQR++FD ++R G ++VYSTC
Sbjct: 392 FHGILLDPPCTGMGLRPKLNSHVITPQGIRDSADYQRKLFDSCANMLRRTGTSVLVYSTC 451
Query: 484 TINPGENEA 492
TI ENEA
Sbjct: 452 TITLDENEA 460
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 85/190 (44%), Gaps = 41/190 (21%)
Query: 126 VIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVL 185
V+V+ CAEAVLRG+ V+ PGV++ G V V V + QP G+
Sbjct: 136 VVVNVGCAEAVLRGSDVFAPGVVSFVGSFVAGQGVFVGVYL-QP----------ANGSTS 184
Query: 186 QGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASE-GIAVDMHNRIFQLPS---FYDVLEG 241
G +TD + L +G GTAMM R I R + G+AV M+ PS +L+
Sbjct: 185 TGGRTDG---KSLFLCVGAGTAMMDRREIIRGRQNGVAVRMNWTPMAQPSKSLLSTMLDA 241
Query: 242 EI--------------FLQNLPSIVTAHALDPQKGE---------RILDMCAAPGGKTTA 278
+ FLQN S+V L Q LD CAAPGGKT+
Sbjct: 242 AMDTRLKTGIAETSNFFLQNYSSMVAVDVLVQQFFSINIQRDGPLAFLDACAAPGGKTSL 301
Query: 279 IASLLRDEGE 288
+ SLL ++ +
Sbjct: 302 LLSLLHEKAQ 311
>gi|423582075|ref|ZP_17558186.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD014]
gi|401212954|gb|EJR19695.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD014]
Length = 444
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 61/96 (63%), Gaps = 1/96 (1%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G + +Q+ S++ A AL+P G+ +LD CAAPGGKTT IA L+ G+V+++D +KV
Sbjct: 227 KGFLSIQDESSMLVARALEPNTGDAVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKV 286
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRR-KNESNDE 334
I++ A +GL+ + T LDA K NE+ D+
Sbjct: 287 RLIKQQAERLGLENVETKALDARKVQEHFANETFDK 322
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F+ +FD++L+DAPCS G+ +P + ++ S R Q + ++ L++ GG
Sbjct: 315 FANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSER-LSTIQIAILEKIAPLLKQGGR 373
Query: 478 IVYSTCTINPGENE 491
+VYSTCTI ENE
Sbjct: 374 LVYSTCTIEKIENE 387
>gi|373106183|ref|ZP_09520486.1| ribosomal RNA small subunit methyltransferase B [Stomatobaculum
longum]
gi|371652558|gb|EHO17966.1| ribosomal RNA small subunit methyltransferase B [Stomatobaculum
longum]
Length = 447
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
EG F+Q+L S + A P+ GER+LD+CAAPGGK+ A A +R EG +V+ D S KV
Sbjct: 229 EGMFFVQDLSSSLAVQAAQPKPGERVLDLCAAPGGKSLAAADCMRGEGSIVSADLSPQKV 288
Query: 300 MDIQKLAAEMGLK-CITTYKLDA 321
+++ A G C+ + DA
Sbjct: 289 ERMRENVARTGFSGCVRPLQSDA 311
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 64/119 (53%), Gaps = 14/119 (11%)
Query: 385 ERTYVSKADTRKNMRRMRNGPGR---NQCLGGRAENSKGFSPN---SFDRVLLDAPCSAL 438
E + VS + + + RMR R + C+ ++ F P+ +FD V+ D PCS L
Sbjct: 275 EGSIVSADLSPQKVERMRENVARTGFSGCVRPLQSDAGVFRPDWEEAFDLVIADLPCSGL 334
Query: 439 GLRPR-----LFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEA 492
G+ R L EE I SLR+ QRR + AV+ VRPGG ++YSTCT+ E+EA
Sbjct: 335 GVLSRKPDIKLRLCEEDIISLRD---LQRRFLENAVRYVRPGGRLLYSTCTLTEEEDEA 390
>gi|292655744|ref|YP_003535641.1| tRNA and rRNA cytosine-C5-methylase [Haloferax volcanii DS2]
gi|448289731|ref|ZP_21480894.1| tRNA and rRNA cytosine-C5-methylase [Haloferax volcanii DS2]
gi|291371381|gb|ADE03608.1| tRNA and rRNA cytosine-C5-methylase [Haloferax volcanii DS2]
gi|445581248|gb|ELY35609.1| tRNA and rRNA cytosine-C5-methylase [Haloferax volcanii DS2]
Length = 313
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 65/125 (52%), Gaps = 16/125 (12%)
Query: 209 MSRAGIFRASEGIA---VDMHNRIFQL---------PSFYDVLEGEIFLQNLPSIVTAHA 256
++RA EG+A D H I +L P F+ L G+ + LP+I A
Sbjct: 38 VARAREALDDEGVAYEPTDWHPGILELEDSSPGTNWPYFHGWLHGQEEVSALPAI----A 93
Query: 257 LDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITT 316
LDPQ GER+ D CAAPG KTT IA+++ DEG +V D + ++ ++ A +G+ +
Sbjct: 94 LDPQPGERVWDTCAAPGSKTTQIAAMMDDEGVLVGNDNNLGRLSALRHNAERLGVTNLVV 153
Query: 317 YKLDA 321
DA
Sbjct: 154 SNQDA 158
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 426 FDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYST 482
FDRVL+DAPCS G P + E T+ +++ Q+ + +AVQ+ + GG +VYST
Sbjct: 180 FDRVLVDAPCSCEGTCRKNPDVLD-EWTMNHVKSVAGIQKGILRRAVQVTKAGGTVVYST 238
Query: 483 CTINPGENEAL 493
CT P ENEA+
Sbjct: 239 CTFAPDENEAI 249
>gi|228940953|ref|ZP_04103512.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis serovar berliner ATCC 10792]
gi|228973882|ref|ZP_04134458.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis serovar thuringiensis str. T01001]
gi|228980472|ref|ZP_04140782.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis Bt407]
gi|228779292|gb|EEM27549.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis Bt407]
gi|228785907|gb|EEM33910.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis serovar thuringiensis str. T01001]
gi|228818789|gb|EEM64855.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis serovar berliner ATCC 10792]
Length = 429
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 61/96 (63%), Gaps = 1/96 (1%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G + +Q+ S++ A AL+P G+ +LD CAAPGGKTT IA L+ G+V+++D +KV
Sbjct: 212 KGFLSIQDESSMLVARALEPNTGDAVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKV 271
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRR-KNESNDE 334
I++ A +GL+ + T LDA K NE+ D+
Sbjct: 272 RLIKQQAERLGLENVETKALDARKVQEHFANETFDK 307
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F+ +FD++L+DAPCS G+ +P + ++ S R Q + ++ L++ GG
Sbjct: 300 FANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSER-LSTIQLAILEKIAPLLKQGGR 358
Query: 478 IVYSTCTINPGENE 491
+VYSTCTI ENE
Sbjct: 359 LVYSTCTIEKIENE 372
>gi|228922619|ref|ZP_04085919.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis serovar huazhongensis BGSC 4BD1]
gi|228837048|gb|EEM82389.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis serovar huazhongensis BGSC 4BD1]
Length = 368
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 61/96 (63%), Gaps = 1/96 (1%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G + +Q+ S++ A AL+P G+ +LD CAAPGGKTT IA L+ G+V+++D +KV
Sbjct: 151 KGFLSIQDESSMLVARALEPNTGDAVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKV 210
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRR-KNESNDE 334
I++ A +GL+ + T LDA K NE+ D+
Sbjct: 211 RLIKQQAERLGLENVETKALDARKVQEHFANETFDK 246
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F+ +FD++L+DAPCS G+ +P + ++ S R Q + ++ L++ GG
Sbjct: 239 FANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSER-LSTIQIAILEKIAPLLKQGGR 297
Query: 478 IVYSTCTINPGENE 491
+VYSTCTI ENE
Sbjct: 298 LVYSTCTIEKIENE 311
>gi|373452533|ref|ZP_09544446.1| ribosomal RNA small subunit methyltransferase B [Eubacterium sp.
3_1_31]
gi|371966402|gb|EHO83892.1| ribosomal RNA small subunit methyltransferase B [Eubacterium sp.
3_1_31]
Length = 415
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 58/90 (64%), Gaps = 2/90 (2%)
Query: 234 SFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVD 293
S+Y+ +G + +Q+ S + A+ +DPQ ERILD+CAAPG K+T +A L++DEGE++ D
Sbjct: 212 SWYE--DGMLSIQDEASQLVAYCVDPQPKERILDVCAAPGTKSTHMAELMQDEGEIICGD 269
Query: 294 RSHNKVMDIQKLAAEMGLKCITTYKLDALK 323
++V IQ+ A + L I +DA K
Sbjct: 270 IHEHRVELIQQGADRLQLHSIHPVVMDATK 299
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 415 AENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQS--LRNHGKYQRRMFDQAVQLV 472
A +G SFDRVL D PCS G+ R + +QS + Q + ++A +V
Sbjct: 297 ATKLQGLQEASFDRVLCDVPCSGYGVLARKSDIKYHMQSEDMDTLIPLQAAILEKASTMV 356
Query: 473 RPGGIIVYSTCTINPGENE 491
+ GGI+VYSTCT+N ENE
Sbjct: 357 KQGGILVYSTCTLNKKENE 375
>gi|228960081|ref|ZP_04121745.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis serovar pakistani str. T13001]
gi|229047552|ref|ZP_04193142.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AH676]
gi|229146436|ref|ZP_04274807.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BDRD-ST24]
gi|229152064|ref|ZP_04280259.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
m1550]
gi|229192034|ref|ZP_04319004.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
ATCC 10876]
gi|228591585|gb|EEK49434.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
ATCC 10876]
gi|228631413|gb|EEK88047.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
m1550]
gi|228637069|gb|EEK93528.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BDRD-ST24]
gi|228723799|gb|EEL75154.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AH676]
gi|228799597|gb|EEM46550.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis serovar pakistani str. T13001]
Length = 429
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 61/96 (63%), Gaps = 1/96 (1%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G + +Q+ S++ A AL+P G+ +LD CAAPGGKTT IA L+ G+V+++D +KV
Sbjct: 212 KGFLSIQDESSMLVARALEPNTGDAVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKV 271
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRR-KNESNDE 334
I++ A +GL+ + T LDA K NE+ D+
Sbjct: 272 RLIKQQAERLGLENVETKALDARKVQEHFANETFDK 307
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F+ +FD++L+DAPCS G+ +P + ++ S R Q + ++ L++ GG
Sbjct: 300 FANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSER-LSTIQIAILEKIAPLLKQGGR 358
Query: 478 IVYSTCTINPGENE 491
+VYSTCTI ENE
Sbjct: 359 LVYSTCTIEKIENE 372
>gi|365159358|ref|ZP_09355539.1| ribosomal RNA small subunit methyltransferase B [Bacillus sp.
7_6_55CFAA_CT2]
gi|363625356|gb|EHL76397.1| ribosomal RNA small subunit methyltransferase B [Bacillus sp.
7_6_55CFAA_CT2]
Length = 444
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 61/96 (63%), Gaps = 1/96 (1%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G + +Q+ S++ A AL+P G+ +LD CAAPGGKTT IA L+ G+V+++D +KV
Sbjct: 227 KGFLSIQDESSMLVARALEPNTGDAVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKV 286
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRR-KNESNDE 334
I++ A +GL+ + T LDA K NE+ D+
Sbjct: 287 RLIKQQAERLGLENVETKALDARKVQEHFANETFDK 322
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F+ +FD++L+DAPCS G+ +P + ++ S R Q + ++ L++ GG
Sbjct: 315 FANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSER-LSTIQIAILEKIAPLLKQGGR 373
Query: 478 IVYSTCTINPGENE 491
+VYSTCTI ENE
Sbjct: 374 LVYSTCTIEKIENE 387
>gi|110004340|emb|CAK98678.1| putative ribosomal rna small subunit methyltransferase protein
[Spiroplasma citri]
Length = 423
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 55/84 (65%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G IF+Q+ S+ A LDPQ+ +R+LDMC+APGGK T ++ ++ ++G + A D S K+
Sbjct: 224 KGLIFIQDEMSMRIAEILDPQETDRVLDMCSAPGGKATHLSQIINNKGIIDAYDISEKKI 283
Query: 300 MDIQKLAAEMGLKCITTYKLDALK 323
I+ A+ +G+ I + LDA K
Sbjct: 284 NLIKMNASRLGITNIYPHLLDARK 307
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 44/68 (64%), Gaps = 3/68 (4%)
Query: 426 FDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYST 482
+D++L DAPCS LG+ +P + T Q L N + Q ++ ++A QL++PGGI+VYST
Sbjct: 314 YDKILCDAPCSGLGVIKRKPEIKYHTLTNQELANLVEIQEQLLEKAYQLLKPGGILVYST 373
Query: 483 CTINPGEN 490
CT EN
Sbjct: 374 CTFGGYEN 381
>gi|308159767|gb|EFO62287.1| Nucleolar protein NOP2 [Giardia lamblia P15]
Length = 502
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 52/85 (61%)
Query: 237 DVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296
+ L G +Q+ S + AL+P+ GERILDM AAPGGKTT + +L++D G ++A D +
Sbjct: 274 EYLRGYYMIQDAASFLPPMALNPKPGERILDMSAAPGGKTTHLGALMQDSGMILANDMNR 333
Query: 297 NKVMDIQKLAAEMGLKCITTYKLDA 321
+++ +Q A MG+ C DA
Sbjct: 334 DRIPALQANLARMGVTCAVISCSDA 358
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 425 SFDRVLLDAPCSALGL--RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLV--RPGG--II 478
+FDRVLLDAPC+ LG+ + A T + Q+ + + A L+ P ++
Sbjct: 367 NFDRVLLDAPCTGLGVVSKDASIKANRTFDDMHRLSHLQKELLNHAFDLLSKHPSSPRLV 426
Query: 479 VYSTCTINPGENEAL 493
YSTC++ ENEA+
Sbjct: 427 CYSTCSVTLSENEAV 441
>gi|448608995|ref|ZP_21660274.1| tRNA and rRNA cytosine-C5-methylase [Haloferax mucosum ATCC
BAA-1512]
gi|445747372|gb|ELZ98828.1| tRNA and rRNA cytosine-C5-methylase [Haloferax mucosum ATCC
BAA-1512]
Length = 313
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 61/115 (53%), Gaps = 16/115 (13%)
Query: 219 EGIA---VDMHNRIFQL---------PSFYDVLEGEIFLQNLPSIVTAHALDPQKGERIL 266
EG+A D H I +L P F+ L G+ + LP+I ALDPQ GERI
Sbjct: 48 EGVAYEPTDWHPGILKLENSSPGTNWPYFHGWLHGQEEVSALPAI----ALDPQPGERIW 103
Query: 267 DMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
D CAAPG KTT IA+++ DEG ++ D + ++ ++ A +G+ + DA
Sbjct: 104 DTCAAPGSKTTQIAAMMDDEGVLIGNDNNLGRLSALRHNAERLGVTNLVVSNQDA 158
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 49/86 (56%), Gaps = 5/86 (5%)
Query: 411 LGGRAENSKGFSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQ 467
G R + G S FDRVL+DAPCS G P + E T+ + + Q+ + +
Sbjct: 166 FGERTPDKSG-SFEQFDRVLVDAPCSCEGTCRKNPDVLD-EWTMNHVASVAGIQKGILRR 223
Query: 468 AVQLVRPGGIIVYSTCTINPGENEAL 493
AVQ+ +PGG +VYSTCT P ENEA+
Sbjct: 224 AVQVTKPGGTVVYSTCTFAPEENEAV 249
>gi|448562423|ref|ZP_21635381.1| tRNA and rRNA cytosine-C5-methylase [Haloferax prahovense DSM
18310]
gi|445718741|gb|ELZ70425.1| tRNA and rRNA cytosine-C5-methylase [Haloferax prahovense DSM
18310]
Length = 313
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 65/125 (52%), Gaps = 16/125 (12%)
Query: 209 MSRAGIFRASEGIA---VDMHNRIFQL---------PSFYDVLEGEIFLQNLPSIVTAHA 256
++RA EG+A D H I +L P F+ L G+ + LP+I A
Sbjct: 38 VTRAREALDDEGVAYEPTDWHPGILKLEDSSPGTNWPYFHGWLHGQEEVSALPAI----A 93
Query: 257 LDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITT 316
LDPQ GER+ D CAAPG KTT IA+++ DEG +V D + ++ ++ A +G+ +
Sbjct: 94 LDPQPGERVWDTCAAPGSKTTQIAAMMDDEGVLVGNDNNLGRLSALRHNAERLGVTNLVV 153
Query: 317 YKLDA 321
DA
Sbjct: 154 SNQDA 158
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 48/86 (55%), Gaps = 5/86 (5%)
Query: 411 LGGRAENSKGFSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQ 467
G R G S FDRVL+DAPCS G P + E T+ +++ Q+ + +
Sbjct: 166 FGERTPEKSG-SFEQFDRVLVDAPCSCEGTCRKNPDVLD-EWTMNHVKSVAGIQKGILRR 223
Query: 468 AVQLVRPGGIIVYSTCTINPGENEAL 493
AVQ+ + GG +VYSTCT P ENEA+
Sbjct: 224 AVQVTKAGGTVVYSTCTFAPEENEAI 249
>gi|14601183|ref|NP_147715.1| RNA (cytosine-C(5)-)-methyltransferase [Aeropyrum pernix K1]
gi|5104768|dbj|BAA80083.1| RNA (cytosine-C(5)-)-methyltransferase [Aeropyrum pernix K1]
Length = 388
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 73/291 (25%), Positives = 120/291 (41%), Gaps = 63/291 (21%)
Query: 38 ALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTISESQIP 97
+L RP +RVNTLK D ++ L +
Sbjct: 35 SLERPPPRLYVRVNTLKVGVDRYLEMLRGV------------------------------ 64
Query: 98 GLEYVVF--VKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVE 155
GLE+ V + + H ++ + + K V+ + +E+VL G+ +Y PGV+ + VE
Sbjct: 65 GLEFRVDEDIPEAIWHPVEGPFSWEFRGKRVVADKVASESVLMGSDLYAPGVV-YARGVE 123
Query: 156 KGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIF 215
+GD V I R G+G A+ I+
Sbjct: 124 RGDEVV-----------------IVAPNGRVVGGGVAVMSWREMRRAGRGLAVRVTKPIY 166
Query: 216 RASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGK 275
RA R+ +LP F EG ++ Q++ S+ A ALDP+ G ++D+ AAPGGK
Sbjct: 167 RAP---------RVSELPGFR---EGLVYGQSVTSMYVARALDPRPGWVVVDLNAAPGGK 214
Query: 276 TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVR 326
+ +A L E +VA+DR +KV +++ +G + D+ +A R
Sbjct: 215 VSHVAQLAGREAVIVAIDRP-SKVGRLRETLERLGAGWVRVVGGDSRRASR 264
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 61/107 (57%), Gaps = 12/107 (11%)
Query: 395 RKNMRRMRNGPGRNQCLGGRAENSKGFSPN---SFDRVLLDAPCSALGLRPRLFAAEETI 451
R+ + R+ G G + +GG + + P D VL+D PC+ +G+ P++F +
Sbjct: 241 RETLERL--GAGWVRVVGGDSRRASRLLPGLAGRVDAVLVDPPCTNIGVIPKVF----DV 294
Query: 452 QSLRNHG---KYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEALCA 495
++LR+ +YQ ++A +L+R GG++ YSTCT++ ENE + A
Sbjct: 295 KTLRDSAAASRYQWMFVEEAWRLLRRGGLLAYSTCTLSSLENELIVA 341
>gi|443700527|gb|ELT99424.1| hypothetical protein CAPTEDRAFT_211590, partial [Capitella teleta]
Length = 341
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 71/145 (48%), Gaps = 16/145 (11%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G I LQ+ S + A AL P G ++D CAAPG KTT +A++++++G V+A DR +
Sbjct: 100 GLIILQDKASCIPAFALQPPPGSHVVDCCAAPGNKTTHLAAIMQNQGRVIAFDRDMKRFS 159
Query: 301 DIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYI-----TSQTSDSMK 355
+ L G CI + D LK +PN KD Y+ S + D
Sbjct: 160 TMNTLIIRAGASCIRSELKDFLKV---------DPNA--HKDVRYLLVDPSCSGSGDFCI 208
Query: 356 LHKEVPSIAAEGLNGDKSCKEKVSN 380
+ + I +EG +KS EK+SN
Sbjct: 209 VGRLDDFIESEGGKQEKSRLEKLSN 233
>gi|39998462|ref|NP_954413.1| 16S rRNA (5-methyl-C967)-methyltransferase [Geobacter
sulfurreducens PCA]
gi|409913814|ref|YP_006892279.1| 16S rRNA (5-methyl-C967)-methyltransferase [Geobacter
sulfurreducens KN400]
gi|39985409|gb|AAR36763.1| 16S rRNA (5-methyl-C967)-methyltransferase [Geobacter
sulfurreducens PCA]
gi|298507406|gb|ADI86129.1| 16S rRNA (5-methyl-C967)-methyltransferase [Geobacter
sulfurreducens KN400]
Length = 448
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 62/116 (53%), Gaps = 8/116 (6%)
Query: 220 GIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAI 279
GI + + LP F EG + +Q+ S + + L+P+ GER+LD CA+PGGK T +
Sbjct: 218 GIRILSRTAVPALPGFG---EGLVIVQDESSQLASLLLEPRSGERVLDACASPGGKATHL 274
Query: 280 ASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEP 335
A ++ D+GEV+A D S K+ I + A +G+ I DA R E N P
Sbjct: 275 AQIMADKGEVIAWDVSEKKLSPIAENARRLGIGIIRPAMADA-----RNPEQNAAP 325
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 426 FDRVLLDAPCSALGLRPRLFAAE--ETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTC 483
FDR+L+DAPCSALG+ R + +T + + Q R+ A L++PGG ++YSTC
Sbjct: 326 FDRILVDAPCSALGVLRRTPEGKWWKTPDDVARLAQSQCRILAGAASLLKPGGTLLYSTC 385
Query: 484 TINPGENEAL 493
+ ENE++
Sbjct: 386 STTTDENESI 395
>gi|423635364|ref|ZP_17611017.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD156]
gi|401278115|gb|EJR84051.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD156]
Length = 444
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 61/96 (63%), Gaps = 1/96 (1%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G + +Q+ S++ A AL+P G+ +LD CAAPGGKTT IA L+ G+V+++D +KV
Sbjct: 227 KGFLSIQDESSMLVARALEPNTGDAVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKV 286
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRR-KNESNDE 334
I++ A +GL+ + T LDA K NE+ D+
Sbjct: 287 RLIKQQAERLGLENVETKALDARKVQEHFANETFDK 322
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F+ +FD++L+DAPCS G+ +P + ++ S R Q + ++ L++ GG
Sbjct: 315 FANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSER-LSTIQIAILEKIAPLLKQGGR 373
Query: 478 IVYSTCTINPGENE 491
+VYSTCTI ENE
Sbjct: 374 LVYSTCTIEKIENE 387
>gi|384187925|ref|YP_005573821.1| sun protein [Bacillus thuringiensis serovar chinensis CT-43]
gi|410676239|ref|YP_006928610.1| ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis Bt407]
gi|423528274|ref|ZP_17504719.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
HuB1-1]
gi|452200304|ref|YP_007480385.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis serovar thuringiensis str. IS5056]
gi|326941634|gb|AEA17530.1| sun protein [Bacillus thuringiensis serovar chinensis CT-43]
gi|402451937|gb|EJV83756.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
HuB1-1]
gi|409175368|gb|AFV19673.1| ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis Bt407]
gi|452105697|gb|AGG02637.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis serovar thuringiensis str. IS5056]
Length = 444
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 61/96 (63%), Gaps = 1/96 (1%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G + +Q+ S++ A AL+P G+ +LD CAAPGGKTT IA L+ G+V+++D +KV
Sbjct: 227 KGFLSIQDESSMLVARALEPNTGDAVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKV 286
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRR-KNESNDE 334
I++ A +GL+ + T LDA K NE+ D+
Sbjct: 287 RLIKQQAERLGLENVETKALDARKVQEHFANETFDK 322
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F+ +FD++L+DAPCS G+ +P + ++ S R Q + ++ L++ GG
Sbjct: 315 FANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSER-LSTIQLAILEKIAPLLKQGGR 373
Query: 478 IVYSTCTINPGENE 491
+VYSTCTI ENE
Sbjct: 374 LVYSTCTIEKIENE 387
>gi|423385368|ref|ZP_17362624.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG1X1-2]
gi|401635424|gb|EJS53179.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG1X1-2]
Length = 444
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 61/96 (63%), Gaps = 1/96 (1%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G + +Q+ S++ A AL+P G+ +LD CAAPGGKTT IA L+ G+V+++D +KV
Sbjct: 227 KGFLSIQDESSMLVARALEPNTGDAVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKV 286
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRR-KNESNDE 334
I++ A +GL+ + T LDA K NE+ D+
Sbjct: 287 RLIKQQAERLGLENVETKALDARKVQEHFANETFDK 322
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F+ +FD++L+DAPCS G+ +P + ++ S R Q + ++ L++ GG
Sbjct: 315 FANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSER-LSTIQLAILEKIAPLLKQGGR 373
Query: 478 IVYSTCTINPGENE 491
+VYSTCTI ENE
Sbjct: 374 LVYSTCTIEKIENE 387
>gi|33239874|ref|NP_874816.1| tRNA and rRNA cytosine-C5-methylase [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
gi|33237400|gb|AAP99468.1| tRNA and rRNA cytosine-C5-methylase [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
Length = 438
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 51/89 (57%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+GE +Q+ + L+P+ GE +LD C+APGGKTT +A L+ D GE+ AVDRS ++
Sbjct: 236 QGEWSVQDRSAQWVVPLLEPRSGEVVLDACSAPGGKTTHLAELMNDIGEIWAVDRSPKRL 295
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRRK 328
+ AA +G CI DA + K
Sbjct: 296 QKVSLNAARLGHHCIKFLSADATNLIELK 324
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 426 FDRVLLDAPCSALGLRPRLFAAEETIQSLRNHG--KYQRRMFDQAVQLVRPGGIIVYSTC 483
F+++LLD PCS LG R A + + G + Q + + + L++PGG IVYSTC
Sbjct: 331 FNKILLDVPCSGLGTLARNPDARWRMSPSQIEGLIQLQFNLLEGILPLLKPGGRIVYSTC 390
Query: 484 TINPGEN 490
TI+P EN
Sbjct: 391 TIHPDEN 397
>gi|229129141|ref|ZP_04258114.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BDRD-Cer4]
gi|228654378|gb|EEL10243.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BDRD-Cer4]
Length = 429
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 61/96 (63%), Gaps = 1/96 (1%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G + +Q+ S++ A AL+P G+ +LD CAAPGGKTT IA L+ G+V+++D +KV
Sbjct: 212 KGFLSIQDESSMLVARALEPNTGDAVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKV 271
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRR-KNESNDE 334
I++ A +GL+ + T LDA K NE+ D+
Sbjct: 272 RLIKQQAERLGLENVETKALDARKVQEHFANETFDK 307
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F+ +FD++L+DAPCS G+ +P + ++ S R Q + ++ L++ GG
Sbjct: 300 FANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSER-LSTIQIAILEKIAPLLKQGGR 358
Query: 478 IVYSTCTINPGENE 491
+VYSTCTI ENE
Sbjct: 359 LVYSTCTIEKIENE 372
>gi|30021953|ref|NP_833584.1| sun protein [Bacillus cereus ATCC 14579]
gi|29897509|gb|AAP10785.1| 16S rRNA m(5)C 967 methyltransferase [Bacillus cereus ATCC 14579]
Length = 444
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 61/96 (63%), Gaps = 1/96 (1%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G + +Q+ S++ A AL+P G+ +LD CAAPGGKTT IA L+ G+V+++D +KV
Sbjct: 227 KGFLSIQDESSMLVARALEPNTGDAVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKV 286
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRR-KNESNDE 334
I++ A +GL+ + T LDA K NE+ D+
Sbjct: 287 RLIKQQAERLGLENVETKALDARKVQEHFANETFDK 322
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F+ +FD++L+DAPCS G+ +P + ++ S R Q + ++ L++ GG
Sbjct: 315 FANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSER-LSTIQIAILEKIAPLLKQGGR 373
Query: 478 IVYSTCTINPGENE 491
+VYSTCTI ENE
Sbjct: 374 LVYSTCTIEKIENE 387
>gi|448570932|ref|ZP_21639443.1| tRNA and rRNA cytosine-C5-methylase [Haloferax lucentense DSM
14919]
gi|445722850|gb|ELZ74501.1| tRNA and rRNA cytosine-C5-methylase [Haloferax lucentense DSM
14919]
Length = 313
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 65/125 (52%), Gaps = 16/125 (12%)
Query: 209 MSRAGIFRASEGIA---VDMHNRIFQL---------PSFYDVLEGEIFLQNLPSIVTAHA 256
++RA EG+A D H I +L P F+ L G+ + LP+I A
Sbjct: 38 VARAREALDDEGVAYEPTDWHPGILKLEDSSPGTNWPYFHGWLHGQEEVSALPAI----A 93
Query: 257 LDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITT 316
LDPQ GER+ D CAAPG KTT IA+++ DEG +V D + ++ ++ A +G+ +
Sbjct: 94 LDPQPGERVWDTCAAPGSKTTQIAAMMDDEGVLVGNDNNLGRLSALRHNAERLGVTNLVV 153
Query: 317 YKLDA 321
DA
Sbjct: 154 SNQDA 158
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 426 FDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYST 482
FDRVL+DAPCS G P + E T+ +++ Q+ + +AVQ+ + GG +VYST
Sbjct: 180 FDRVLVDAPCSCEGTCRKNPDVLD-EWTMNHVKSVAGIQKGILRRAVQVTKAGGTVVYST 238
Query: 483 CTINPGENEAL 493
CT P ENEA+
Sbjct: 239 CTFAPEENEAV 249
>gi|341581348|ref|YP_004761840.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus sp. 4557]
gi|340809006|gb|AEK72163.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus sp. 4557]
Length = 311
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 48/73 (65%), Gaps = 2/73 (2%)
Query: 424 NSFDRVLLDAPCSALGL--RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYS 481
N FDRVLLDAPCS++G+ + F E ++ + + Q+R+ A + ++PGG +VYS
Sbjct: 175 NLFDRVLLDAPCSSVGMIRKKWRFLTEWRMKEVVRYMNIQKRLIMAAYRALKPGGTLVYS 234
Query: 482 TCTINPGENEALC 494
TCTI+P ENE +
Sbjct: 235 TCTIDPMENEEVV 247
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 33/53 (62%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVD 293
G IF Q S++ L+P+ GE +LDM AAPG KT +A + +EG ++A D
Sbjct: 87 GLIFGQEASSMIPPVVLNPKPGELVLDMAAAPGSKTGQMAQYMENEGCIIAND 139
>gi|448585436|ref|ZP_21647829.1| tRNA and rRNA cytosine-C5-methylase [Haloferax gibbonsii ATCC
33959]
gi|445726136|gb|ELZ77753.1| tRNA and rRNA cytosine-C5-methylase [Haloferax gibbonsii ATCC
33959]
Length = 313
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 61/115 (53%), Gaps = 16/115 (13%)
Query: 219 EGIA---VDMHNRIFQL---------PSFYDVLEGEIFLQNLPSIVTAHALDPQKGERIL 266
EG+A D H I +L P F+ L G+ + LP+I ALDPQ GER+
Sbjct: 48 EGVAYEPTDWHPGILKLEDSSPGTNWPYFHGWLHGQEEVSALPAI----ALDPQPGERVW 103
Query: 267 DMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
D CAAPG KTT IA+++ DEG +V D + ++ ++ A +G+ + DA
Sbjct: 104 DTCAAPGSKTTQIAAMMDDEGVLVGNDNNLGRLSALRHNAERLGVTNLVVSNQDA 158
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 48/86 (55%), Gaps = 5/86 (5%)
Query: 411 LGGRAENSKGFSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQ 467
G R G S FDRVL+DAPCS G P + E T+ +++ Q+ + +
Sbjct: 166 FGERTPEKSG-SFEQFDRVLVDAPCSCEGTCRKNPDVLD-EWTMNHVKSVAGIQKGILRR 223
Query: 468 AVQLVRPGGIIVYSTCTINPGENEAL 493
AVQ+ + GG +VYSTCT P ENEA+
Sbjct: 224 AVQVTKAGGTVVYSTCTFAPEENEAI 249
>gi|206971310|ref|ZP_03232261.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AH1134]
gi|218233863|ref|YP_002368666.1| sun protein [Bacillus cereus B4264]
gi|296504360|ref|YP_003666060.1| sun protein [Bacillus thuringiensis BMB171]
gi|423412330|ref|ZP_17389450.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG3O-2]
gi|423431885|ref|ZP_17408889.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG4O-1]
gi|423585726|ref|ZP_17561813.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD045]
gi|423628958|ref|ZP_17604707.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD154]
gi|423641054|ref|ZP_17616672.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD166]
gi|423649728|ref|ZP_17625298.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD169]
gi|423656724|ref|ZP_17632023.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD200]
gi|206734082|gb|EDZ51253.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AH1134]
gi|218161820|gb|ACK61812.1| sun protein [Bacillus cereus B4264]
gi|296325412|gb|ADH08340.1| sun protein [Bacillus thuringiensis BMB171]
gi|401104398|gb|EJQ12375.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG3O-2]
gi|401116641|gb|EJQ24479.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG4O-1]
gi|401233072|gb|EJR39568.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD045]
gi|401268503|gb|EJR74551.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD154]
gi|401280115|gb|EJR86037.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD166]
gi|401283008|gb|EJR88905.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD169]
gi|401290465|gb|EJR96159.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD200]
Length = 444
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 61/96 (63%), Gaps = 1/96 (1%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G + +Q+ S++ A AL+P G+ +LD CAAPGGKTT IA L+ G+V+++D +KV
Sbjct: 227 KGFLSIQDESSMLVARALEPNTGDAVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKV 286
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRR-KNESNDE 334
I++ A +GL+ + T LDA K NE+ D+
Sbjct: 287 RLIKQQAERLGLENVETKALDARKVQEHFANETFDK 322
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F+ +FD++L+DAPCS G+ +P + ++ S R Q + ++ L++ GG
Sbjct: 315 FANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSER-LSTIQIAILEKIAPLLKQGGR 373
Query: 478 IVYSTCTINPGENE 491
+VYSTCTI ENE
Sbjct: 374 LVYSTCTIEKIENE 387
>gi|423426001|ref|ZP_17403032.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG3X2-2]
gi|423437320|ref|ZP_17414301.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG4X12-1]
gi|423503457|ref|ZP_17480049.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
HD73]
gi|449090808|ref|YP_007423249.1| ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis serovar kurstaki str. HD73]
gi|401110748|gb|EJQ18647.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG3X2-2]
gi|401120475|gb|EJQ28271.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG4X12-1]
gi|402459678|gb|EJV91415.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
HD73]
gi|449024565|gb|AGE79728.1| ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis serovar kurstaki str. HD73]
Length = 444
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 61/96 (63%), Gaps = 1/96 (1%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G + +Q+ S++ A AL+P G+ +LD CAAPGGKTT IA L+ G+V+++D +KV
Sbjct: 227 KGFLSIQDESSMLVARALEPNTGDAVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKV 286
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRR-KNESNDE 334
I++ A +GL+ + T LDA K NE+ D+
Sbjct: 287 RLIKQQAERLGLENVETKALDARKVQEHFANETFDK 322
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F+ +FD++L+DAPCS G+ +P + ++ S R Q + ++ L++ GG
Sbjct: 315 FANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSER-LSTIQIAILEKIAPLLKQGGR 373
Query: 478 IVYSTCTINPGENE 491
+VYSTCTI ENE
Sbjct: 374 LVYSTCTIEKIENE 387
>gi|448454964|ref|ZP_21594366.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum lipolyticum
DSM 21995]
gi|445814344|gb|EMA64309.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum lipolyticum
DSM 21995]
Length = 310
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 58/111 (52%), Gaps = 8/111 (7%)
Query: 219 EGIAVD---MHNRIFQLPS-----FYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCA 270
EG+A D H+ +F+LP + + G Q S++ ALDPQ GER+ D CA
Sbjct: 48 EGVAYDPVGWHDGLFRLPDGNPGGNWPYVHGWTHGQEEVSVLPGLALDPQPGERVWDACA 107
Query: 271 APGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
APG KTT IA + DEG VVA D + ++ ++ A +G+ DA
Sbjct: 108 APGSKTTQIADAMDDEGTVVANDNNLGRLSALRHNAERLGITNAIVTNQDA 158
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 414 RAENSKGFSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQ 470
R ++K + + FDR L+DAPCS G P + + T+ + Q+ + +AVQ
Sbjct: 159 RNFSTKPLAFDEFDRALVDAPCSCEGTCRKNPDVVD-QWTLDHVHAVAGIQKGILARAVQ 217
Query: 471 LVRPGGIIVYSTCTINPGENEAL 493
RPGG +VYSTCT P ENEA+
Sbjct: 218 ATRPGGTVVYSTCTFAPEENEAV 240
>gi|222479906|ref|YP_002566143.1| RNA methylase, NOL1/NOP2/sun family [Halorubrum lacusprofundi ATCC
49239]
gi|222452808|gb|ACM57073.1| RNA methylase, NOL1/NOP2/sun family [Halorubrum lacusprofundi ATCC
49239]
Length = 314
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 58/111 (52%), Gaps = 8/111 (7%)
Query: 219 EGIA---VDMHNRIFQLPS-----FYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCA 270
EG+A VD H+ +F+LP + + G Q S++ ALDPQ GE + D CA
Sbjct: 48 EGVAYEPVDWHDGLFRLPDGNPGGNWPYVHGWTHGQEEVSVLPGLALDPQPGEHVWDACA 107
Query: 271 APGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
APG KTT IA + DEG VVA D + ++ ++ A +G+ DA
Sbjct: 108 APGSKTTQIADAMNDEGTVVANDNNLGRLSALRHNAERLGITNAIVTNQDA 158
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 54/103 (52%), Gaps = 6/103 (5%)
Query: 395 RKNMRRM--RNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALG-LRPRLFAAEE-T 450
R N R+ N NQ R ++K + + FDR L+DAPCS G R L ++ T
Sbjct: 140 RHNAERLGITNAIVTNQ--DARNFSTKPLAFDEFDRALVDAPCSCEGTCRKNLDVVDQWT 197
Query: 451 IQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEAL 493
+ + Q+ + +AVQ R GG +VYSTCT P ENEA+
Sbjct: 198 LDHVHAVAGIQKGILARAVQATRSGGTVVYSTCTFAPEENEAV 240
>gi|448624613|ref|ZP_21670561.1| tRNA and rRNA cytosine-C5-methylase [Haloferax denitrificans ATCC
35960]
gi|445749818|gb|EMA01260.1| tRNA and rRNA cytosine-C5-methylase [Haloferax denitrificans ATCC
35960]
Length = 313
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 65/125 (52%), Gaps = 16/125 (12%)
Query: 209 MSRAGIFRASEGIA---VDMHNRIFQL---------PSFYDVLEGEIFLQNLPSIVTAHA 256
++RA EG+A D H I +L P F+ L G+ + LP+I A
Sbjct: 38 VARAREALDDEGVAYEPTDWHPGILKLEDSSPGTNWPYFHGWLHGQEEVSALPAI----A 93
Query: 257 LDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITT 316
LDPQ GER+ D CAAPG KTT IA+++ DEG +V D + ++ ++ A +G+ +
Sbjct: 94 LDPQPGERVWDTCAAPGSKTTQIAAMMDDEGVLVGNDNNLGRLSALRHNAERLGVTNLVV 153
Query: 317 YKLDA 321
DA
Sbjct: 154 SNQDA 158
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 426 FDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYST 482
FDRVL+DAPCS G P + E T+ +++ Q+ + +AVQ+ + GG +VYST
Sbjct: 180 FDRVLVDAPCSCEGTCRKNPDVLD-EWTMNHVKSVAGIQKGILRRAVQVTKAGGTVVYST 238
Query: 483 CTINPGENEAL 493
CT P ENEA+
Sbjct: 239 CTFAPEENEAI 249
>gi|433422122|ref|ZP_20405923.1| tRNA and rRNA cytosine-C5-methylase [Haloferax sp. BAB2207]
gi|448595829|ref|ZP_21653276.1| tRNA and rRNA cytosine-C5-methylase [Haloferax alexandrinus JCM
10717]
gi|432198703|gb|ELK54957.1| tRNA and rRNA cytosine-C5-methylase [Haloferax sp. BAB2207]
gi|445742283|gb|ELZ93778.1| tRNA and rRNA cytosine-C5-methylase [Haloferax alexandrinus JCM
10717]
Length = 313
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 65/125 (52%), Gaps = 16/125 (12%)
Query: 209 MSRAGIFRASEGIA---VDMHNRIFQL---------PSFYDVLEGEIFLQNLPSIVTAHA 256
++RA EG+A D H I +L P F+ L G+ + LP+I A
Sbjct: 38 VARAREALDDEGVAYEPTDWHPGILKLEDSSPGTNWPYFHGWLHGQEEVSALPAI----A 93
Query: 257 LDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITT 316
LDPQ GER+ D CAAPG KTT IA+++ DEG +V D + ++ ++ A +G+ +
Sbjct: 94 LDPQPGERVWDTCAAPGSKTTQIAAMMDDEGVLVGNDNNLGRLSALRHNAERLGVTNLVV 153
Query: 317 YKLDA 321
DA
Sbjct: 154 SNQDA 158
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 48/86 (55%), Gaps = 5/86 (5%)
Query: 411 LGGRAENSKGFSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQ 467
G R G S FDRVL+DAPCS G P + E T+ +++ Q+ + +
Sbjct: 166 FGERTPERDG-SFEQFDRVLVDAPCSCEGTCRKNPDVLD-EWTMNHVKSVAGIQKGILRR 223
Query: 468 AVQLVRPGGIIVYSTCTINPGENEAL 493
AVQ+ + GG +VYSTCT P ENEA+
Sbjct: 224 AVQVTKAGGTVVYSTCTFAPEENEAI 249
>gi|291543913|emb|CBL17022.1| ribosomal RNA small subunit methyltransferase RsmB [Ruminococcus
champanellensis 18P13]
Length = 434
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 63/121 (52%), Gaps = 14/121 (11%)
Query: 212 AGIFRASEGIAVDMHNRIFQLPSFYDVLEGEI-----------FLQNLPSIVTAHALDPQ 260
+ RA I+V+ H LP Y V G++ +Q+L S + ALDPQ
Sbjct: 189 SAFLRAMGEISVEKHP---LLPDCYRVQGGDVTRTDAFAQGMFHVQDLASQLCCLALDPQ 245
Query: 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
G+ +LD+CAAPGGK+ +A L+ D G++ A D N+V I + A + L+C+ D
Sbjct: 246 LGDTVLDLCAAPGGKSFTLAELMEDRGQLYAFDLHTNRVKLIAQGAQRLHLQCVHARTGD 305
Query: 321 A 321
A
Sbjct: 306 A 306
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 409 QCLGGRAENSKGFSPN--SFDRVLLDAPCSALG-LRPRLFAAEETIQSLRNHGKYQRRMF 465
QC+ R ++ +P DRVL D PCS LG +R + + + Q ++
Sbjct: 297 QCVHARTGDASLHNPELPQADRVLCDVPCSGLGVIRRKPEIKYKDPAAFTGLPPVQAKIL 356
Query: 466 DQAVQLVRPGGIIVYSTCTINPGENEAL 493
+ A V+PGG +VYSTCT++ EN+ +
Sbjct: 357 ENAAHYVKPGGYLVYSTCTLSRAENDGV 384
>gi|427702673|ref|YP_007045895.1| ribosomal RNA small subunit methyltransferase RsmB [Cyanobium
gracile PCC 6307]
gi|427345841|gb|AFY28554.1| ribosomal RNA small subunit methyltransferase RsmB [Cyanobium
gracile PCC 6307]
Length = 472
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 50/82 (60%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
EG +Q+ + A LDP+ G+RILD CAAPGGK+T +A L+ D GEV A+DRS ++
Sbjct: 263 EGLWCVQDRSAQAIAPLLDPRPGQRILDACAAPGGKSTHLAELIGDRGEVWALDRSEARL 322
Query: 300 MDIQKLAAEMGLKCITTYKLDA 321
+ A +GL I + DA
Sbjct: 323 RRLDHNAERLGLTTIRSLAADA 344
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 426 FDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGK--YQRRMFDQAVQLVRPGGIIVYSTC 483
F+R+LLDAPCS LG R A I G QR++ + + L+ PGG ++Y+TC
Sbjct: 358 FERILLDAPCSGLGTLARHPDARWRITPDAIDGLVILQRQLLEAMLPLLAPGGRLLYATC 417
Query: 484 TINPGENEA 492
T+ P EN A
Sbjct: 418 TVEPRENGA 426
>gi|448540796|ref|ZP_21623717.1| tRNA and rRNA cytosine-C5-methylase [Haloferax sp. ATCC BAA-646]
gi|448549099|ref|ZP_21627875.1| tRNA and rRNA cytosine-C5-methylase [Haloferax sp. ATCC BAA-645]
gi|448555726|ref|ZP_21631655.1| tRNA and rRNA cytosine-C5-methylase [Haloferax sp. ATCC BAA-644]
gi|445708949|gb|ELZ60784.1| tRNA and rRNA cytosine-C5-methylase [Haloferax sp. ATCC BAA-646]
gi|445713788|gb|ELZ65563.1| tRNA and rRNA cytosine-C5-methylase [Haloferax sp. ATCC BAA-645]
gi|445717249|gb|ELZ68967.1| tRNA and rRNA cytosine-C5-methylase [Haloferax sp. ATCC BAA-644]
Length = 313
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 65/125 (52%), Gaps = 16/125 (12%)
Query: 209 MSRAGIFRASEGIA---VDMHNRIFQL---------PSFYDVLEGEIFLQNLPSIVTAHA 256
++RA EG+A D H I +L P F+ L G+ + LP+I A
Sbjct: 38 VARAREALDDEGVAYEPTDWHPGILKLEDSSPGTNWPYFHGWLHGQEEVSALPAI----A 93
Query: 257 LDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITT 316
LDPQ GER+ D CAAPG KTT IA+++ DEG +V D + ++ ++ A +G+ +
Sbjct: 94 LDPQPGERVWDTCAAPGSKTTQIAAMMDDEGVLVGNDNNLGRLSALRHNAERLGVTNLVV 153
Query: 317 YKLDA 321
DA
Sbjct: 154 SNQDA 158
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 48/86 (55%), Gaps = 5/86 (5%)
Query: 411 LGGRAENSKGFSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQ 467
G R G S FDRVL+DAPCS G P + E T+ +++ Q+ + +
Sbjct: 166 FGERTPEKDG-SFEQFDRVLVDAPCSCEGTCRKNPDVLD-EWTMNHVKSVAGIQKGILRR 223
Query: 468 AVQLVRPGGIIVYSTCTINPGENEAL 493
AVQ+ + GG +VYSTCT P ENEA+
Sbjct: 224 AVQVTKAGGTVVYSTCTFAPEENEAV 249
>gi|397906023|ref|ZP_10506850.1| Ribosomal RNA small subunit methyltransferase B [Caloramator
australicus RC3]
gi|397160937|emb|CCJ34185.1| Ribosomal RNA small subunit methyltransferase B [Caloramator
australicus RC3]
Length = 446
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 56/91 (61%)
Query: 231 QLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVV 290
Q+ + L+G ++Q+ S++ + L+P+ GE++LDMCAAPGGK T +A L+ + GE++
Sbjct: 221 QIEKMQEFLDGLFYVQDQSSMMASIILNPKPGEKVLDMCAAPGGKATHMAELMENTGEII 280
Query: 291 AVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
A D +K+ I + + +G+ I DA
Sbjct: 281 AFDVHEHKIDLINENSKRLGIGIIKPMLKDA 311
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 4/73 (5%)
Query: 424 NSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
N+FD++LLDAPCS LGL +P + +++++++ K Q + A + V+ G I+Y
Sbjct: 320 NNFDKILLDAPCSGLGLIRKKPEI-RWNVSLKNIKDLTKIQSILLKNASKYVKINGEILY 378
Query: 481 STCTINPGENEAL 493
STCTI ENE +
Sbjct: 379 STCTITKDENEQI 391
>gi|333978754|ref|YP_004516699.1| N utilization substance protein B [Desulfotomaculum kuznetsovii DSM
6115]
gi|333822235|gb|AEG14898.1| N utilization substance protein B-like protein [Desulfotomaculum
kuznetsovii DSM 6115]
Length = 453
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 50/90 (55%)
Query: 232 LPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVA 291
L SF EG +Q+ SI+ HAL P G R+LD AAPG KTT +A L+ D GE+ A
Sbjct: 226 LHSFAPFEEGLFLVQDESSILVGHALSPLPGARVLDAAAAPGTKTTHLAQLMGDRGEITA 285
Query: 292 VDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
+D +K+ I +G+ C+ + DA
Sbjct: 286 LDIHPHKIKLIAANCRRLGITCVRPVEADA 315
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 424 NSFDRVLLDAPCSALG-LRPRLFA-AEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYS 481
+ +D +LLDAPCS LG LR R A +T S+ Q+ M + + ++PGG++VYS
Sbjct: 324 HQWDFILLDAPCSGLGVLRRRPDARWRKTEASIAEMAGLQKEMLEGVARCLKPGGVLVYS 383
Query: 482 TCTINPGEN 490
TCT+ EN
Sbjct: 384 TCTVTREEN 392
>gi|327400017|ref|YP_004340856.1| Fmu (Sun) domain-containing protein [Archaeoglobus veneficus SNP6]
gi|327315525|gb|AEA46141.1| Fmu (Sun) domain protein [Archaeoglobus veneficus SNP6]
Length = 440
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 55/84 (65%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G+ +Q+L S + AHA+ P+ GER+LD+ AAPG KT+ IA L+ + G+++AVD S +V
Sbjct: 228 DGKYVVQDLASTLVAHAMKPEPGERVLDLAAAPGLKTSHIAMLMENRGKIMAVDNSEERV 287
Query: 300 MDIQKLAAEMGLKCITTYKLDALK 323
++ ++G++ + D +K
Sbjct: 288 RRMKAKMKKLGVEIVECRVADGVK 311
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 38/71 (53%), Gaps = 10/71 (14%)
Query: 427 DRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKY------QRRMFDQAVQLVRPGGIIVY 480
DRVLLD PCS G F ++ + KY QRRM + A + V GG++VY
Sbjct: 317 DRVLLDPPCSTTGA----FRNYPCVKWRYDEYKYRATVKLQRRMLENAYRNVGEGGVVVY 372
Query: 481 STCTINPGENE 491
STC+I ENE
Sbjct: 373 STCSITFDENE 383
>gi|313888508|ref|ZP_07822175.1| ribosomal RNA small subunit methyltransferase B [Peptoniphilus
harei ACS-146-V-Sch2b]
gi|312845537|gb|EFR32931.1| ribosomal RNA small subunit methyltransferase B [Peptoniphilus
harei ACS-146-V-Sch2b]
Length = 430
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 50/71 (70%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G ++Q+L SI+ + L+P K ++LD+CAAPGGKTT ++ L+ + GE+++ D+S K+
Sbjct: 227 KGHFYVQDLGSILVSTFLNPSKDSKVLDLCAAPGGKTTHLSELMDNTGEIISCDKSKGKI 286
Query: 300 MDIQKLAAEMG 310
I++ A +G
Sbjct: 287 KLIKENAERLG 297
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 424 NSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
N FD VL+DAPCS GL +P + + I L+ G Q + ++A + VR G+++Y
Sbjct: 317 NKFDYVLVDAPCSGTGLYRKKPDI-KWNKGIYDLKELGVIQLEILNKAKEYVREKGLLLY 375
Query: 481 STCTINPGENE 491
STC+++ ENE
Sbjct: 376 STCSLSKIENE 386
>gi|255101745|ref|ZP_05330722.1| ribosomal RNA small subunit methyltransferase [Clostridium
difficile QCD-63q42]
Length = 441
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 75/137 (54%), Gaps = 11/137 (8%)
Query: 196 ERSGLYIGQGTAMMSRAGIF-RASE-GIA---VDMHNRIFQLPSFYDVLEGEIF------ 244
E+ +YI T +SR + + SE GI V M ++ ++ + E+F
Sbjct: 174 EKPSIYIRTNTLKISREELIEKLSEMGIVCLKVPMVEEAIKVEKMKNIEKNELFKAGLFT 233
Query: 245 LQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQK 304
+Q++ S++ ++P++G ILD+C+APGGK+T +A+L+ + G+VVA D +K+ I
Sbjct: 234 IQDISSMIVGKVINPKEGSFILDVCSAPGGKSTHLATLMNNTGQVVARDIFEHKLKLINS 293
Query: 305 LAAEMGLKCITTYKLDA 321
+GLK + + DA
Sbjct: 294 TVNRLGLKNVFVERFDA 310
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 422 SPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGII 478
S + FD VL D PCS G+ +P + +E + L++ Q+++ + A + V+ GG +
Sbjct: 317 SISKFDYVLADVPCSGFGIIRRKPEIKYKKE--EELKDITSIQKKILENASKYVKVGGTL 374
Query: 479 VYSTCTINPGEN 490
VYSTCTI EN
Sbjct: 375 VYSTCTIQGVEN 386
>gi|302392192|ref|YP_003828012.1| sun protein [Acetohalobium arabaticum DSM 5501]
gi|302204269|gb|ADL12947.1| sun protein [Acetohalobium arabaticum DSM 5501]
Length = 448
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 55/88 (62%), Gaps = 3/88 (3%)
Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
+FQ SF G +Q L SI+ H ++PQ + +LD+C+APGGKTT +A L+ ++GE
Sbjct: 225 LFQSNSF---TAGYFQIQGLASIIAGHIMNPQPKDIVLDLCSAPGGKTTHLAELMANQGE 281
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKCITT 316
+VA D +K+ I++ +G++ + T
Sbjct: 282 IVANDLHEDKLELIERNCNRLGIRIVRT 309
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 426 FDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYST 482
FDR+L+DAPCS LG+ +P + ++ Q + + + Q + + A + ++P G +VYST
Sbjct: 323 FDRILVDAPCSGLGMIAKKPEI-KWQKKPQDIDSLAELQLELLNNAGRFLKPKGELVYST 381
Query: 483 CTINPGEN 490
CTI EN
Sbjct: 382 CTITHQEN 389
>gi|448602998|ref|ZP_21656819.1| tRNA and rRNA cytosine-C5-methylase [Haloferax sulfurifontis ATCC
BAA-897]
gi|445746194|gb|ELZ97656.1| tRNA and rRNA cytosine-C5-methylase [Haloferax sulfurifontis ATCC
BAA-897]
Length = 313
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 65/125 (52%), Gaps = 16/125 (12%)
Query: 209 MSRAGIFRASEGIA---VDMHNRIFQL---------PSFYDVLEGEIFLQNLPSIVTAHA 256
++RA EG+A D H I +L P F+ L G+ + LP+I A
Sbjct: 38 VARAREALDDEGVAYEPTDWHPGILKLEDSSPGTNWPYFHGWLHGQEEVSALPAI----A 93
Query: 257 LDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITT 316
LDPQ GER+ D CAAPG KTT IA+++ DEG ++ D + ++ ++ A +G+ +
Sbjct: 94 LDPQPGERVWDTCAAPGSKTTQIAAMMDDEGVLIGNDNNLGRLSALRHNAERLGVTNLVV 153
Query: 317 YKLDA 321
DA
Sbjct: 154 SNQDA 158
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 48/81 (59%), Gaps = 6/81 (7%)
Query: 416 ENSKGFSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLV 472
E S+ F FDRVL+DAPCS G P + E T+ +++ Q+ + +AVQ+
Sbjct: 172 EKSESFE--QFDRVLVDAPCSCEGTCRKNPDVLD-EWTMNHVKSVAGIQKGILRRAVQVT 228
Query: 473 RPGGIIVYSTCTINPGENEAL 493
+ GG +VYSTCT P ENEA+
Sbjct: 229 KAGGNVVYSTCTFAPEENEAI 249
>gi|365904219|ref|ZP_09441978.1| 16S rRNA methyltransferase B [Lactobacillus versmoldensis KCTC
3814]
Length = 440
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 48/77 (62%), Gaps = 8/77 (10%)
Query: 420 GFSPNSFDRVLLDAPCSALGL---RP--RLFAAEETIQSLRNHGKYQRRMFDQAVQLVRP 474
F PNSFD++L+DAPCS LGL +P R F E + L+ K Q ++ + L++P
Sbjct: 313 AFEPNSFDKILVDAPCSGLGLIRRKPELRYFRKPEDLLDLQ---KIQLQILNSLTTLLKP 369
Query: 475 GGIIVYSTCTINPGENE 491
GI+V+STCT + ENE
Sbjct: 370 NGIMVFSTCTFDAEENE 386
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G +Q+ S+ A AL+ + E +LD CAAPGGKTT IAS L + G V+ +D K
Sbjct: 226 QGLFTIQDESSMTVAPALNLKDDELVLDSCAAPGGKTTHIASYLTN-GSVMGLDIHKPKT 284
Query: 300 MDIQKLAAEMGLK-CITTYKLDALKA 324
IQ+ + +G + I T LDA KA
Sbjct: 285 KLIQENSQRLGYEDIIKTKALDARKA 310
>gi|354558670|ref|ZP_08977924.1| sun protein [Desulfitobacterium metallireducens DSM 15288]
gi|353545732|gb|EHC15182.1| sun protein [Desulfitobacterium metallireducens DSM 15288]
Length = 453
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 62/106 (58%), Gaps = 3/106 (2%)
Query: 216 RASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGK 275
R E + ++ + +L SF EG +Q+ S + AH L+PQ G+ +LD CAAPGGK
Sbjct: 211 RVPESLVLENSGALDKLASFQ---EGLFAVQDESSQLVAHILNPQPGDIVLDACAAPGGK 267
Query: 276 TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
TT +A ++++G+++A D +KV I +LA +G+ I DA
Sbjct: 268 TTHLAQKMKNQGKILAFDIHPHKVELIAQLAERLGITNIQAQAGDA 313
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 409 QCLGGRAENSKGFSPNSFDRVLLDAPCSALGL-----RPRLFAAEETIQSLRNHGKYQRR 463
Q G A G + +VL+DAPCS LG+ R EE I L + Q
Sbjct: 307 QAQAGDARELPGIENGTCQKVLVDAPCSGLGVIRRRADLRWNKEEEEIGKLPS---LQLE 363
Query: 464 MFDQAVQLVRPGGIIVYSTCTINPGEN 490
+ ++A Q V GG +VYSTCT+ P EN
Sbjct: 364 ILERAAQCVALGGELVYSTCTVEPEEN 390
>gi|159118308|ref|XP_001709373.1| Nucleolar protein NOP2 [Giardia lamblia ATCC 50803]
gi|157437489|gb|EDO81699.1| Nucleolar protein NOP2 [Giardia lamblia ATCC 50803]
Length = 502
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 51/85 (60%)
Query: 237 DVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296
+ L G +Q+ S + AL P+ GERILDM AAPGGKTT + +L++D G ++A D +
Sbjct: 274 EYLRGYYMIQDAASFLPPMALSPKPGERILDMSAAPGGKTTHLGALMQDSGMILANDMNR 333
Query: 297 NKVMDIQKLAAEMGLKCITTYKLDA 321
+++ +Q A MG+ C DA
Sbjct: 334 DRIPALQANLARMGVTCAVISCSDA 358
Score = 46.2 bits (108), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 425 SFDRVLLDAPCSALGL--RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLV--RPGG--II 478
+FDRVLLDAPC+ LG+ + A T + + Q+ + A L+ P ++
Sbjct: 367 NFDRVLLDAPCTGLGVVSKDASIKANRTFEDIHKLSHLQKELLKCAFDLLAKHPSSPRLV 426
Query: 479 VYSTCTINPGENEAL 493
YSTC++ ENEA+
Sbjct: 427 CYSTCSVTLSENEAV 441
>gi|70945403|ref|XP_742525.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56521557|emb|CAH82175.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
Length = 511
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 47/69 (68%), Gaps = 1/69 (1%)
Query: 426 FDRVLLDAPCSALGL-RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCT 484
FD++LLDAPCS G+ A +TI+ +R+ + QR++ + A+ +V+ GGI++YSTC+
Sbjct: 380 FDKILLDAPCSGTGVVNKNKTARRKTIKEIRDLAQKQRKLLNNAIDIVKNGGIVIYSTCS 439
Query: 485 INPGENEAL 493
I ENE +
Sbjct: 440 ITVEENEQV 448
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 51/90 (56%)
Query: 234 SFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVD 293
S + L G +Q+ S++ L+ ++ E +LDMCAAPGGK T I ++ +++G V A D
Sbjct: 282 SLNEYLYGYYIIQSSSSLIPVLELNIKENELVLDMCAAPGGKCTYICTIKKNKGIVYAND 341
Query: 294 RSHNKVMDIQKLAAEMGLKCITTYKLDALK 323
+ + I+ AA MG+ + D+LK
Sbjct: 342 INKMRCKAIEAHAARMGINNLIITSFDSLK 371
>gi|307150080|ref|YP_003885464.1| sun protein [Cyanothece sp. PCC 7822]
gi|306980308|gb|ADN12189.1| sun protein [Cyanothece sp. PCC 7822]
Length = 450
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 51/86 (59%), Gaps = 3/86 (3%)
Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
I QLP F EG +Q+ + + H LDPQ E I+D CAAPGGKTT IA L++D G
Sbjct: 229 ISQLPGFE---EGWWTVQDSSAQLVTHLLDPQPEEIIIDACAAPGGKTTHIAELMQDRGT 285
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKCI 314
+ A DR +++ +Q+ A + L I
Sbjct: 286 IWACDRVASRLRKVQQNAQRLQLNSI 311
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 4/70 (5%)
Query: 427 DRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTC 483
DRVL+DAPCS LG RP + +T + + QR + ++A ++P G++VY+TC
Sbjct: 329 DRVLIDAPCSGLGTLHKRPDI-RWRQTPEKIEELSVLQRELLEEAASWIKPKGVLVYATC 387
Query: 484 TINPGENEAL 493
T+NP ENE L
Sbjct: 388 TLNPLENEKL 397
>gi|406831139|ref|ZP_11090733.1| sun protein [Schlesneria paludicola DSM 18645]
Length = 477
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 71/150 (47%), Gaps = 24/150 (16%)
Query: 192 PYYFERSGLYIGQGTAMMSRAGIFRAS---------------------EGIAVDMHNRIF 230
P R G + + +M+R R+S E ++ R+
Sbjct: 214 PEELFRMGAWFNSPSPLMARPNTLRSSYDEVVADFQAAGITIQPLEGTESFVIEGTTRVE 273
Query: 231 QLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVV 290
LP F +EG+ +Q+ + A L PQ G+R+ D+CAAPGGKT +A+L+++EG ++
Sbjct: 274 ALPGF---VEGKFVIQDFSASRAAVRLAPQPGQRVWDVCAAPGGKTCHLAALMKNEGHIL 330
Query: 291 AVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
A D +++ + + A +G I + +D
Sbjct: 331 ATDIRSDRLEIVHENAQRLGATIIRSQLVD 360
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 426 FDRVLLDAPCSALGLRPRLFAAEETI--QSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTC 483
FD +L+D PCS G+ + A I +R + Q + +++ + GG +VYSTC
Sbjct: 371 FDAILVDVPCSNTGVLAKRPEARWRITPDGVRELNRVQANLLGWSLERLTSGGRLVYSTC 430
Query: 484 TINPGENEALC 494
+I P ENE L
Sbjct: 431 SIEPDENENLV 441
>gi|20094975|ref|NP_614822.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
gi|19888229|gb|AAM02752.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
Length = 450
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 67/112 (59%), Gaps = 10/112 (8%)
Query: 214 IFRASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPG 273
I + EG+ I ++P + EG +Q+ + + + L+P+ GE ++D+CAAPG
Sbjct: 220 ILKIPEGLP------IGEMPEWE---EGLFVIQDEAAALASAVLNPKPGEVVVDLCAAPG 270
Query: 274 GKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG-LKCITTYKLDALKA 324
GKTT +A L+ EG++VA+D ++ ++++A MG L CI T+ +D +A
Sbjct: 271 GKTTHMAQLMGGEGKIVAIDVDEVRMERLREIAERMGVLDCIETHLMDGREA 322
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 427 DRVLLDAPCSALGLRPRLFAAEETI--QSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCT 484
D VL+D PCSA G P+ I L K+Q + ++V+PGG ++YSTC+
Sbjct: 332 DAVLVDPPCSADGTIPKNPERRWRITPDELERLPKFQYELLKAGAEMVKPGGRLLYSTCS 391
Query: 485 INPGENEALC 494
+ P E+E +
Sbjct: 392 MFPEEDEEVV 401
>gi|317121758|ref|YP_004101761.1| sun protein [Thermaerobacter marianensis DSM 12885]
gi|315591738|gb|ADU51034.1| sun protein [Thermaerobacter marianensis DSM 12885]
Length = 511
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 233 PSFYDVL-EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVA 291
P+ D EG + Q+ S++ H LDP+ G+ ++D+ AAPGGK+T IA + D G VVA
Sbjct: 285 PAELDAFQEGALTWQDESSMLAVHVLDPRPGDLVVDVAAAPGGKSTHIAERMGDRGRVVA 344
Query: 292 VDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323
D ++ + + A +GL CI LD K
Sbjct: 345 CDADPGRLEKVGEAARRLGLGCIEPLALDGRK 376
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 427 DRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTC 483
DRVL D PCS LG+ RP L +T L + Q + A ++PGG++VYSTC
Sbjct: 386 DRVLADVPCSGLGVLARRPDLRW-RKTPDDLAALAELQGELLRAAAACLKPGGVLVYSTC 444
Query: 484 TINPGENE 491
T P EN+
Sbjct: 445 TTEPEENQ 452
>gi|253682518|ref|ZP_04863315.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum D str. 1873]
gi|253562230|gb|EES91682.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum D str. 1873]
Length = 443
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 66/115 (57%), Gaps = 3/115 (2%)
Query: 219 EGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTA 278
E I ++ I P F D G++ +Q+ +++ A +D ++G +LD+C+APGGKTT
Sbjct: 212 EAIIINKGKSIESNPLFED---GKVTVQDESAMLVAATMDIKEGSLVLDLCSAPGGKTTH 268
Query: 279 IASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESND 333
I+ ++ + G+V+A D NK+ ++ A +G+ I KLDA K + E+ D
Sbjct: 269 ISEIMNNTGKVMAFDIHENKLSLVKDNAKRLGINNIECSKLDASKFNEKLKETAD 323
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 427 DRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTC 483
D VL+D PCS LG+ +P + + ++S+++ Q+ + A + V+ GG ++YSTC
Sbjct: 323 DAVLIDVPCSGLGIIRKKPEI-KYTKNMESVKDIVNIQKEIMKNAARYVKVGGTLLYSTC 381
Query: 484 TINPGENE 491
TIN ENE
Sbjct: 382 TINKKENE 389
>gi|441505243|ref|ZP_20987231.1| Ribosomal RNA small subunit methyltransferase F [Photobacterium sp.
AK15]
gi|441427098|gb|ELR64572.1| Ribosomal RNA small subunit methyltransferase F [Photobacterium sp.
AK15]
Length = 476
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Query: 420 GFSPNSFDRVLLDAPCSALG-LRPRLFAAEE-TIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
G++P SFD +LLDAPCS G +R A E +++S+ QR + A Q ++PGG+
Sbjct: 181 GWAPESFDSILLDAPCSGEGAIRKDDDAMENWSLESVEEIAAVQRDLIVSAFQALKPGGV 240
Query: 478 IVYSTCTINPGENEALC 494
+VYSTCT+N EN+ C
Sbjct: 241 MVYSTCTLNLSENQHAC 257
>gi|337284681|ref|YP_004624155.1| fmu protein [Pyrococcus yayanosii CH1]
gi|334900615|gb|AEH24883.1| fmu protein [Pyrococcus yayanosii CH1]
Length = 451
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G+I +Q S V + LDP+ GE ++DM AAPGGKTT +A L++++G++ A D ++
Sbjct: 237 KGKIIVQEEASAVASLVLDPKPGEVVVDMAAAPGGKTTHLAELMKNKGKIYAFDIDEARM 296
Query: 300 MDIQKLAAEMGLKCITTYKLDALKA 324
+++ MG++ + K DA KA
Sbjct: 297 RRMKEFLKRMGIRIVKPIKKDARKA 321
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 12/72 (16%)
Query: 427 DRVLLDAPCSALG-------LRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIV 479
D+VLLDAPC++ G LR RL A+ +R + QR + D A +L++PGG ++
Sbjct: 331 DKVLLDAPCTSSGTIGKNPELRWRLREAK-----IREMVELQRELLDAAARLLKPGGRLL 385
Query: 480 YSTCTINPGENE 491
Y+TC++ E+E
Sbjct: 386 YTTCSVFLEEDE 397
>gi|416350348|ref|ZP_11680855.1| 16S rRNA methyltransferase B [Clostridium botulinum C str.
Stockholm]
gi|338196305|gb|EGO88506.1| 16S rRNA methyltransferase B [Clostridium botulinum C str.
Stockholm]
Length = 443
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 66/115 (57%), Gaps = 3/115 (2%)
Query: 219 EGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTA 278
E I ++ I P F D G++ +Q+ +++ A +D ++G +LD+C+APGGKTT
Sbjct: 212 EAIIINKGKSIESNPLFED---GKVTVQDESAMLVAATMDIKEGSLVLDLCSAPGGKTTH 268
Query: 279 IASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESND 333
I+ ++ + G+V+A D NK+ ++ A +G+ I KLDA K + E+ D
Sbjct: 269 ISEIMNNTGKVMAFDIHENKLSLVKDNAKRLGINNIECSKLDASKFNEKLKETAD 323
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 427 DRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTC 483
D VL+D PCS LG+ +P + + ++S+++ Q+ + A + V+ GG ++YSTC
Sbjct: 323 DAVLIDVPCSGLGIIRKKPEI-KYTKNMESVKDIVNIQKEIMKNAARYVKVGGTLLYSTC 381
Query: 484 TINPGENE 491
TIN ENE
Sbjct: 382 TINKKENE 389
>gi|310659156|ref|YP_003936877.1| RsmB [[Clostridium] sticklandii]
gi|308825934|emb|CBH21972.1| RsmB [[Clostridium] sticklandii]
Length = 444
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 56/83 (67%)
Query: 239 LEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNK 298
++G +Q+L S++ AL+P G+ +LD+C+APGGK+ IA L+ ++G++ ++D S +K
Sbjct: 240 VKGGFVIQDLSSMLAVKALNPLPGDTVLDICSAPGGKSFYIADLMENKGQLDSMDISEHK 299
Query: 299 VMDIQKLAAEMGLKCITTYKLDA 321
+ ++K A E+G+ I +DA
Sbjct: 300 IQMLKKRAVELGVDIINARVMDA 322
Score = 45.8 bits (107), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 7/71 (9%)
Query: 424 NSFDRVLLDAPCSALGL---RPRL-FAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIV 479
N +D++L+DAPCS G+ +P + + + E + L + Q ++ A + ++ G +V
Sbjct: 331 NRYDKILVDAPCSGFGIIRRKPEIRYKSYEDVNQL---PEIQYQILSNASKYLKDTGSLV 387
Query: 480 YSTCTINPGEN 490
YSTCT+ EN
Sbjct: 388 YSTCTLEKKEN 398
>gi|88809208|ref|ZP_01124717.1| Sun protein (Fmu protein) [Synechococcus sp. WH 7805]
gi|88787150|gb|EAR18308.1| Sun protein (Fmu protein) [Synechococcus sp. WH 7805]
Length = 430
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 66/123 (53%), Gaps = 4/123 (3%)
Query: 209 MSRAGIFRASEGIAV-DMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILD 267
M A I +G+ V D + Q P F EG +Q+ + A L + G+R+LD
Sbjct: 197 MPTAPIPGCPDGLQVLDPAGDLRQWPGFD---EGYWCVQDRAAQWVAPLLAVEAGQRVLD 253
Query: 268 MCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRR 327
CAAPGGK T +A L+ D+GEV AVDRS ++ + A+ +G CI DA + +++
Sbjct: 254 ACAAPGGKATHLAELMGDQGEVWAVDRSPGRLQRVAANASRLGSHCIHALAADASQLLQQ 313
Query: 328 KNE 330
+ +
Sbjct: 314 RPQ 316
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 425 SFDRVLLDAPCSALGLRPRLFAAEETIQ--SLRNHGKYQRRMFDQAVQLVRPGGIIVYST 482
SFDR+LLDAPCS LG R A I S+ + + Q + D + L++PGG IVY+T
Sbjct: 320 SFDRILLDAPCSGLGTLARHPDARWRISESSIADLVQLQAGLLDALLPLLKPGGRIVYAT 379
Query: 483 CTINPGEN 490
CT++P EN
Sbjct: 380 CTVHPAEN 387
>gi|145219990|ref|YP_001130699.1| sun protein [Chlorobium phaeovibrioides DSM 265]
gi|145206154|gb|ABP37197.1| sun protein [Chlorobium phaeovibrioides DSM 265]
Length = 445
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 48/81 (59%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G + +QN ++ L+P G +LDMCAAPGGKT A+A L+ +EG + A+D K
Sbjct: 230 GLVSVQNPTQLLACLLLNPTPGSEVLDMCAAPGGKTAALAELMGNEGHITALDIYEQKTN 289
Query: 301 DIQKLAAEMGLKCITTYKLDA 321
I++LA +G+ IT DA
Sbjct: 290 KIRRLAETLGISIITALTDDA 310
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 5/121 (4%)
Query: 373 SCKEKVSNEKGVERTYVSKADTRKNMRRMRNGPGRNQCLGGRAENSKGF-SPNSFDRVLL 431
+ E + NE + + + T K +RR+ G + + ++++ F P D +LL
Sbjct: 267 ALAELMGNEGHITALDIYEQKTNK-IRRLAETLGIS-IITALTDDARSFIPPTPPDAILL 324
Query: 432 DAPCSALGLRPRLFAAEETIQSLRNHG--KYQRRMFDQAVQLVRPGGIIVYSTCTINPGE 489
DAPC+ G+ R + S + G K Q + + A +++ GG++VY+TC+++P E
Sbjct: 325 DAPCTGTGVLGRRTELRWKLDSEKLDGLLKLQAELLEHAAHILKEGGVLVYATCSVDPRE 384
Query: 490 N 490
N
Sbjct: 385 N 385
>gi|423084336|ref|ZP_17072841.1| ribosomal RNA small subunit methyltransferase B [Clostridium
difficile 002-P50-2011]
gi|423088032|ref|ZP_17076417.1| ribosomal RNA small subunit methyltransferase B [Clostridium
difficile 050-P50-2011]
gi|357542641|gb|EHJ24683.1| ribosomal RNA small subunit methyltransferase B [Clostridium
difficile 002-P50-2011]
gi|357543560|gb|EHJ25577.1| ribosomal RNA small subunit methyltransferase B [Clostridium
difficile 050-P50-2011]
Length = 441
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 76/137 (55%), Gaps = 11/137 (8%)
Query: 196 ERSGLYIGQGTAMMSRAGIF-RASE-GIA---VDMHNRIFQLPSFYDVLEGEIF------ 244
E+ +YI T +SR + + SE GI V M ++ ++ + E+F
Sbjct: 174 EKPSIYIRTNTLKISREELIEKLSEMGIVCLKVPMVEEAIKVEKMKNIEKNELFKAGLFT 233
Query: 245 LQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQK 304
+Q++ S++ ++P++G +LD+C+APGGK+T +A+L+ + G+VVA D +K+ I+
Sbjct: 234 IQDISSMIVGKVINPKEGSFVLDVCSAPGGKSTHLATLMNNTGQVVARDIFEHKLKLIKS 293
Query: 305 LAAEMGLKCITTYKLDA 321
+GLK + + DA
Sbjct: 294 TVNRLGLKNVFVERFDA 310
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 422 SPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGII 478
S + FD VL D PCS G+ +P + +E + L++ Q+++ + A + V+ GG +
Sbjct: 317 SISKFDYVLADVPCSGFGIIRRKPEIKYKKE--EELKDITSIQKKILENASKYVKVGGTL 374
Query: 479 VYSTCTINPGEN 490
VYSTCTI EN
Sbjct: 375 VYSTCTIQDVEN 386
>gi|302823170|ref|XP_002993239.1| hypothetical protein SELMODRAFT_136794 [Selaginella moellendorffii]
gi|300138909|gb|EFJ05660.1| hypothetical protein SELMODRAFT_136794 [Selaginella moellendorffii]
Length = 476
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
Query: 427 DRVLLDAPCSALGLRPRL--FAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCT 484
DRVLLDAPCS LG+ + T++S K Q + D A ++VRPGG++VYSTC+
Sbjct: 356 DRVLLDAPCSGLGVLSKRADLRWRRTLESFEELTKLQDELLDGACKMVRPGGVLVYSTCS 415
Query: 485 INPGEN 490
I P EN
Sbjct: 416 IEPDEN 421
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Query: 238 VLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHN 297
+ +G +Q+ + LDPQ G+ ++D CAAPGGK+ IAS L+ +G+V+AVD +
Sbjct: 260 IQQGRCTVQDESGGLVVELLDPQPGDLVIDCCAAPGGKSLYIASRLKGKGKVIAVDINKA 319
Query: 298 KVMDIQKLAAEMGL-KCITTYKLDALKAVRRK 328
++ ++ A + G+ + ++ Y +DA +R K
Sbjct: 320 RLQLLKDSAKKAGVSEQVSVYNVDARDMIRGK 351
>gi|68067801|ref|XP_675834.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56495242|emb|CAI04459.1| conserved hypothetical protein [Plasmodium berghei]
Length = 533
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 47/69 (68%), Gaps = 1/69 (1%)
Query: 426 FDRVLLDAPCSALGL-RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCT 484
FD++LLDAPCS G+ A +TI+ +R+ + QR++ + A+ +V+ GGI++YSTC+
Sbjct: 364 FDKILLDAPCSGTGVVNKNKNARRKTIKEIRDLSQKQRKLLNNAIDMVKNGGIVIYSTCS 423
Query: 485 INPGENEAL 493
I ENE +
Sbjct: 424 ITVEENEQV 432
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 51/90 (56%)
Query: 234 SFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVD 293
S + L G +Q+ S++ L+ ++ E +LDMCAAPGGK T I ++ +++G V A D
Sbjct: 266 SLNEYLYGYYIIQSSSSLIPVLELNIKENELVLDMCAAPGGKCTFICTIQKNKGIVYAND 325
Query: 294 RSHNKVMDIQKLAAEMGLKCITTYKLDALK 323
+ + I+ AA MG+ + D+LK
Sbjct: 326 INKLRCKAIEAHAARMGINNLIITSFDSLK 355
>gi|125973090|ref|YP_001037000.1| sun protein [Clostridium thermocellum ATCC 27405]
gi|256004593|ref|ZP_05429571.1| sun protein [Clostridium thermocellum DSM 2360]
gi|281417285|ref|ZP_06248305.1| sun protein [Clostridium thermocellum JW20]
gi|385779009|ref|YP_005688174.1| sun protein [Clostridium thermocellum DSM 1313]
gi|419721504|ref|ZP_14248667.1| sun protein [Clostridium thermocellum AD2]
gi|419725128|ref|ZP_14252181.1| sun protein [Clostridium thermocellum YS]
gi|125713315|gb|ABN51807.1| sun protein [Clostridium thermocellum ATCC 27405]
gi|255991465|gb|EEU01569.1| sun protein [Clostridium thermocellum DSM 2360]
gi|281408687|gb|EFB38945.1| sun protein [Clostridium thermocellum JW20]
gi|316940689|gb|ADU74723.1| sun protein [Clostridium thermocellum DSM 1313]
gi|380771449|gb|EIC05316.1| sun protein [Clostridium thermocellum YS]
gi|380782444|gb|EIC12079.1| sun protein [Clostridium thermocellum AD2]
Length = 455
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 53/82 (64%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G +Q+ S++ A LDP+ GE ILD+C+APGGK+T IA ++++ G V++ D +K+
Sbjct: 238 KGYFQVQDESSMLVAKVLDPKPGETILDVCSAPGGKSTHIAQIMKNRGTVISRDIHEHKI 297
Query: 300 MDIQKLAAEMGLKCITTYKLDA 321
I++ +GL+ I T DA
Sbjct: 298 KLIEQAKERLGLEIIKTEVFDA 319
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 14/73 (19%)
Query: 427 DRVLLDAPCSALGL---RPRLFAAEET-----IQSLRNHGKYQRRMFDQAVQLVRPGGII 478
DRVL+DAPC+ G+ +P + ++ + I SL Q ++ A + V+ GG++
Sbjct: 331 DRVLVDAPCTGFGIIRRKPDIKWSKNSEDKAEIVSL------QHKILSTASKYVKDGGVL 384
Query: 479 VYSTCTINPGENE 491
VYSTCT+ P ENE
Sbjct: 385 VYSTCTLEPEENE 397
>gi|384244792|gb|EIE18290.1| S-adenosyl-L-methionine-dependent methyltransferase [Coccomyxa
subellipsoidea C-169]
Length = 453
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 50/81 (61%)
Query: 243 IFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDI 302
+ LQ+ S + AHAL+PQ G +LD CAAPG KTT +A+L+ +G V+A D+ ++ +
Sbjct: 223 LILQSKASCMPAHALEPQPGWDVLDACAAPGNKTTHLAALMEGKGRVLAFDKDPKRLKRL 282
Query: 303 QKLAAEMGLKCITTYKLDALK 323
+ AA G CIT D L+
Sbjct: 283 KANAAATGADCITARVADFLQ 303
>gi|302824271|ref|XP_002993780.1| hypothetical protein SELMODRAFT_137586 [Selaginella moellendorffii]
gi|300138376|gb|EFJ05146.1| hypothetical protein SELMODRAFT_137586 [Selaginella moellendorffii]
Length = 476
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
Query: 427 DRVLLDAPCSALGLRPRL--FAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCT 484
DRVLLDAPCS LG+ + T++S K Q + D A ++VRPGG++VYSTC+
Sbjct: 356 DRVLLDAPCSGLGVLSKRADLRWRRTLESFEELTKLQDELLDGACKMVRPGGVLVYSTCS 415
Query: 485 INPGEN 490
I P EN
Sbjct: 416 IEPDEN 421
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Query: 238 VLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHN 297
+ +G +Q+ + LDPQ G+ ++D CAAPGGK+ IAS L+ +G+V+AVD +
Sbjct: 260 IQQGRCTVQDESGGLVVELLDPQPGDLVIDCCAAPGGKSLYIASRLKGKGKVIAVDINKA 319
Query: 298 KVMDIQKLAAEMGL-KCITTYKLDALKAVRRK 328
++ ++ A + G+ + ++ Y +DA +R K
Sbjct: 320 RLQLLKDSAKKAGVSEQVSVYNVDARDMIRGK 351
>gi|282901368|ref|ZP_06309293.1| Fmu, rRNA SAM-dependent methyltransferase [Cylindrospermopsis
raciborskii CS-505]
gi|281193647|gb|EFA68619.1| Fmu, rRNA SAM-dependent methyltransferase [Cylindrospermopsis
raciborskii CS-505]
Length = 446
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 56/93 (60%), Gaps = 3/93 (3%)
Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
I LP F EG +Q+ + + H LDP+ GE I+D+CAAPGGKTT IA L+ D G+
Sbjct: 227 IQNLPGFT---EGWWCIQDAAAQLVGHLLDPRPGEVIIDVCAAPGGKTTHIAELMGDNGK 283
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
+ A DR+ +++ + + A + L+ I + D+
Sbjct: 284 IYACDRTPSRLRKLSENAQRLRLQSIEIFPGDS 316
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 427 DRVLLDAPCSALGLRPRLFAAE--ETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCT 484
DRVLLDAPCS LG R A + + S+ + QR + V+PGG++VY+TCT
Sbjct: 327 DRVLLDAPCSGLGTMHRHADARWRQNLSSVGDLAHIQRELISHTANFVKPGGVLVYATCT 386
Query: 485 INPGENEAL 493
++P ENE L
Sbjct: 387 LHPQENEEL 395
>gi|217967819|ref|YP_002353325.1| sun protein [Dictyoglomus turgidum DSM 6724]
gi|217336918|gb|ACK42711.1| sun protein [Dictyoglomus turgidum DSM 6724]
Length = 430
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 57/83 (68%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
EG +Q+ S++ A L+P+ G R++D+C+APG K+T +A L++++G++++VD + N++
Sbjct: 222 EGYFVIQSEASMLPALILNPKPGNRVIDLCSAPGLKSTHLAELMKNQGKIISVDINKNRL 281
Query: 300 MDIQKLAAEMGLKCITTYKLDAL 322
+++ A +G+ I T+ D L
Sbjct: 282 RLVEENAKRLGISIIETFSQDVL 304
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 4/73 (5%)
Query: 425 SFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYS 481
SFDRVLLDAPCS LG+ +P + + N + Q +M ++A +L++ G +VYS
Sbjct: 313 SFDRVLLDAPCSGLGVISHKPEI-KWRLKRDDIYNLSEMQVKMLERAGKLLKREGRMVYS 371
Query: 482 TCTINPGENEALC 494
TCTI ENE++
Sbjct: 372 TCTITWHENESVL 384
>gi|403378883|ref|ZP_10920940.1| 16S rRNA methyltransferase B [Paenibacillus sp. JC66]
Length = 457
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 49/82 (59%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
EG +Q+ S++ A+DP+ G +LD CAAPGGKTT +A L+ D+G V+ D +K
Sbjct: 240 EGLFTIQDESSMLVGEAVDPRPGMSVLDCCAAPGGKTTHMAELMNDQGMVIGCDIHEHKE 299
Query: 300 MDIQKLAAEMGLKCITTYKLDA 321
I+K A +GL I T DA
Sbjct: 300 ALIRKQAQRLGLTSIQTLAADA 321
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 58/105 (55%), Gaps = 7/105 (6%)
Query: 391 KADTRKNMRRMRNGPGRNQCLGGRAENSKG-FSPNSFDRVLLDAPCSALGL---RPRLFA 446
+A RK +R+ G Q L A G F SFDRVLLDAPCS LG+ +P L
Sbjct: 299 EALIRKQAQRL--GLTSIQTLAADARTLSGRFPAESFDRVLLDAPCSGLGVIRRKPDLKW 356
Query: 447 AEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENE 491
A+E ++ + Q + + LV+PGG++VYSTCTI ENE
Sbjct: 357 AKEP-NEVKALSRIQAELLEAVHPLVKPGGLLVYSTCTIAAEENE 400
>gi|218778410|ref|YP_002429728.1| sun protein [Desulfatibacillum alkenivorans AK-01]
gi|218759794|gb|ACL02260.1| sun protein [Desulfatibacillum alkenivorans AK-01]
Length = 455
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
+F+LP F EG+ +Q+ S +TA LDP+ GE++LD CA G KT+ IA L+ + GE
Sbjct: 232 VFELPGFS---EGKFSVQDAASQMTALCLDPRPGEKVLDACAGLGSKTSHIAQLMENTGE 288
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
++A D K+ +++ A + + + T+ LD
Sbjct: 289 ILAADLEPGKLKKLEEEMARLKVSIVKTHALD 320
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 48/75 (64%), Gaps = 2/75 (2%)
Query: 421 FSPNSFDRVLLDAPCSALGLRPRLFAAE--ETIQSLRNHGKYQRRMFDQAVQLVRPGGII 478
P FD+VL+DAPC+ LG+ R ++ +T+ S+ H K Q + +A +LVRPGG+I
Sbjct: 327 LEPQGFDKVLVDAPCTGLGVIRRNPDSKWSKTLNSIHKHAKLQGMILSRAAELVRPGGLI 386
Query: 479 VYSTCTINPGENEAL 493
+YS C++ P E + +
Sbjct: 387 LYSVCSMEPEETDGV 401
>gi|78212348|ref|YP_381127.1| sun protein [Synechococcus sp. CC9605]
gi|78196807|gb|ABB34572.1| sun protein [Synechococcus sp. CC9605]
Length = 445
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 47/75 (62%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
EG +Q+ + A LDP+ G+RILD CAAPGGK T +A L+ D+ E+ AVDRS ++
Sbjct: 243 EGHWCVQDCSAQWIAPVLDPKPGDRILDACAAPGGKATHLAELVGDQAEIWAVDRSAGRL 302
Query: 300 MDIQKLAAEMGLKCI 314
+ AA +GL I
Sbjct: 303 KRVAANAARLGLASI 317
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Query: 424 NSFDRVLLDAPCSALGLRPRLFAAEE--TIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYS 481
SF R+L+DAPCS LG R A T QS+R Q+ + D + L+ P G++VY+
Sbjct: 336 ESFQRILIDAPCSGLGTLARHPDARWRVTPQSIRGLLPQQQALLDGLLPLLAPQGVLVYA 395
Query: 482 TCTINPGENEA 492
TCTI+P EN+A
Sbjct: 396 TCTIHPDENQA 406
>gi|212223865|ref|YP_002307101.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus onnurineus NA1]
gi|212008822|gb|ACJ16204.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus onnurineus NA1]
Length = 312
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 2/73 (2%)
Query: 424 NSFDRVLLDAPCSALGL--RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYS 481
N+FDRVLLDAPCS++G+ + F ++ + + Q+R+ A + ++PGG++VYS
Sbjct: 175 NTFDRVLLDAPCSSVGMIRKSWKFLTGWRLRGVVKYMNIQKRLILAAYKALKPGGVLVYS 234
Query: 482 TCTINPGENEALC 494
TCTI+P ENE +
Sbjct: 235 TCTIDPLENEEVV 247
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVA----VDRSH 296
G +F Q S++ LDP+ GE +LDM AAPG KT IA + +EG ++A +DR++
Sbjct: 87 GLVFGQEASSMIPPVVLDPKPGELVLDMAAAPGSKTGQIAQYMENEGCIIANDPKIDRAN 146
Query: 297 NKVMDIQKL 305
+ ++ ++
Sbjct: 147 ILIANLNRM 155
>gi|78185142|ref|YP_377577.1| Fmu, rRNA SAM-dependent methyltransferase [Synechococcus sp.
CC9902]
gi|78169436|gb|ABB26533.1| Fmu, rRNA SAM-dependent methyltransferase [Synechococcus sp.
CC9902]
Length = 445
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 66/116 (56%), Gaps = 2/116 (1%)
Query: 218 SEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTT 277
++G+ V H+ L ++ +EG +Q+ + A L+P+ G+R+LD CAAPGGK T
Sbjct: 219 ADGLQVLGHS--GDLRNWPGYVEGHWCVQDRAAQWVAPLLEPKPGDRVLDACAAPGGKAT 276
Query: 278 AIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESND 333
+A L+ D GE+ A+DRS ++ + AA +GL I DA + R + E N+
Sbjct: 277 HLAELMGDVGEIWAIDRSAGRLKRVAVNAARLGLGSIQALAADAAQLSRERPEWNE 332
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 424 NSFDRVLLDAPCSALGLRPRLFAAEE--TIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYS 481
+F +L+DAPCS LG R A T ++++ Q+ + D V L+ PGG +VY+
Sbjct: 332 ETFQSILIDAPCSGLGTLARHPDARWRMTPKAIQELLPQQQALLDGLVPLLAPGGRLVYA 391
Query: 482 TCTINPGEN 490
TCT++P EN
Sbjct: 392 TCTMHPAEN 400
>gi|432108174|gb|ELK33094.1| Putative methyltransferase NSUN6 [Myotis davidii]
Length = 177
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/42 (69%), Positives = 34/42 (80%)
Query: 246 QNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEG 287
QNLPS V H LDPQ GE+ILD+CAAPGGKTT IA+L+ D+
Sbjct: 20 QNLPSAVVTHVLDPQPGEKILDLCAAPGGKTTHIAALMHDQA 61
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/28 (71%), Positives = 24/28 (85%)
Query: 464 MFDQAVQLVRPGGIIVYSTCTINPGENE 491
M DQAV+L+RPGG++VYSTCTI ENE
Sbjct: 57 MHDQAVKLLRPGGVLVYSTCTITLAENE 84
>gi|284161369|ref|YP_003399992.1| RNA methylase [Archaeoglobus profundus DSM 5631]
gi|284011366|gb|ADB57319.1| RNA methylase, NOL1/NOP2/sun family [Archaeoglobus profundus DSM
5631]
Length = 445
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 59/101 (58%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G+ +Q S + + LDP+ E ++D+CAAPGGKT +A L+R+ G + A D ++
Sbjct: 233 KGKFVVQEEASALASILLDPKPNETVVDLCAAPGGKTIHMAELMRNRGVIHAFDVDELRL 292
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNS 340
+++L G+K + YK+DA KAV ES + M ++
Sbjct: 293 KRMEELIKRCGVKIVKIYKMDARKAVDVLGESIADKVMLDA 333
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 12/72 (16%)
Query: 427 DRVLLDAPCSALG-------LRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIV 479
D+V+LDAPC++ G LR R+ EE I+ + + Q + + + L++P G I+
Sbjct: 327 DKVMLDAPCTSDGTLMKNPELRWRI--REEKIEEI---AQLQYELLNTGIDLLKPKGRIL 381
Query: 480 YSTCTINPGENE 491
Y TC+I ENE
Sbjct: 382 YCTCSIFREENE 393
>gi|15920491|ref|NP_376160.1| Sun family protein [Sulfolobus tokodaii str. 7]
Length = 353
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 57/93 (61%), Gaps = 1/93 (1%)
Query: 237 DVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296
+ L G ++Q L S+V + LDP + + +LDM AAPG KTT +A L++++G +VAV++S
Sbjct: 130 EYLSGYYYIQGLASMVPPYVLDPNENDLVLDMAAAPGSKTTQLAQLMKNKGLIVAVEKSR 189
Query: 297 NKVMDIQKLAAEMGLKCITTYKLDALKAVRRKN 329
++ + M +K + + DA + +R+ N
Sbjct: 190 ERIKSLYSNVNRMKIKNVVLLRADA-RILRKLN 221
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 426 FDRVLLDAPCSALGLRPR--LFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTC 483
F+++LLD PCS GL P + TI+ L+ + Q + D A ++ PGGI+VYS+C
Sbjct: 224 FNKILLDVPCSGEGLIPEDPSRKTKTTIEDLKIFFQNQLELIDIAYNILEPGGILVYSSC 283
Query: 484 TINPGENEAL 493
+I P ENEA+
Sbjct: 284 SIAPEENEAV 293
>gi|342306137|dbj|BAK54226.1| RNA (m5C) methyltransferase [Sulfolobus tokodaii str. 7]
Length = 335
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 57/93 (61%), Gaps = 1/93 (1%)
Query: 237 DVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296
+ L G ++Q L S+V + LDP + + +LDM AAPG KTT +A L++++G +VAV++S
Sbjct: 112 EYLSGYYYIQGLASMVPPYVLDPNENDLVLDMAAAPGSKTTQLAQLMKNKGLIVAVEKSR 171
Query: 297 NKVMDIQKLAAEMGLKCITTYKLDALKAVRRKN 329
++ + M +K + + DA + +R+ N
Sbjct: 172 ERIKSLYSNVNRMKIKNVVLLRADA-RILRKLN 203
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 426 FDRVLLDAPCSALGLRPR--LFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTC 483
F+++LLD PCS GL P + TI+ L+ + Q + D A ++ PGGI+VYS+C
Sbjct: 206 FNKILLDVPCSGEGLIPEDPSRKTKTTIEDLKIFFQNQLELIDIAYNILEPGGILVYSSC 265
Query: 484 TINPGENEAL 493
+I P ENEA+
Sbjct: 266 SIAPEENEAV 275
>gi|348027000|ref|YP_004766805.1| ribosomal RNA small subunit methyltransferase B [Megasphaera
elsdenii DSM 20460]
gi|341823054|emb|CCC73978.1| ribosomal RNA small subunit methyltransferase B [Megasphaera
elsdenii DSM 20460]
Length = 446
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 57/103 (55%), Gaps = 14/103 (13%)
Query: 396 KNMRRM-RNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALG-LRPRL-FAAEETIQ 452
KN+R + +NG Q G+A DRVL+DAPCS LG LR ++ +
Sbjct: 303 KNVRTLLQNGCTIGQKYAGKA-----------DRVLVDAPCSGLGVLRHKIDLRWRKNPS 351
Query: 453 SLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEALCA 495
LR QRR+ D A Q VRPGG++VYSTCT+N EN + A
Sbjct: 352 DLRTLPALQRRILDSASQCVRPGGVLVYSTCTMNDDENSRIVA 394
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 56/100 (56%), Gaps = 3/100 (3%)
Query: 217 ASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKT 276
+ +GI +D + I +L D G +Q+ PS + AH +DPQ E + D+CAAPGGKT
Sbjct: 211 SPDGIYLDGNPGIHELTCLRD---GRAIIQDEPSQLVAHIVDPQPHEVVFDVCAAPGGKT 267
Query: 277 TAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITT 316
T +A+L V D +K+ I+ A ++GLK + T
Sbjct: 268 THLATLGGPSCVVYGGDIHEHKLRLIEYNAQKLGLKNVRT 307
>gi|374307505|ref|YP_005053936.1| ribosomal RNA small subunit methyltransferase B [Filifactor alocis
ATCC 35896]
gi|291166482|gb|EFE28528.1| ribosomal RNA small subunit methyltransferase B [Filifactor alocis
ATCC 35896]
Length = 440
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 53/83 (63%)
Query: 239 LEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNK 298
L+G +Q++ S+ AL P+ GE+ILD+CAAPGGKTTAIA ++ ++G V + D+ NK
Sbjct: 230 LKGYFTIQDISSVCCIKALSPKTGEKILDICAAPGGKTTAIAEIIGEKGIVFSNDKGVNK 289
Query: 299 VMDIQKLAAEMGLKCITTYKLDA 321
+ I + A + L I +DA
Sbjct: 290 LNLISQSAKRLCLDNIELSDIDA 312
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 426 FDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYST 482
FDRVL+D PCS LG+ +P + + ++ Q+++ D A Q V+ GI++YST
Sbjct: 323 FDRVLVDVPCSGLGVIRRKPEIRYKQGV--EFKSLYPIQKKILDNASQYVKKDGILIYST 380
Query: 483 CTINPGENE 491
CT+N EN+
Sbjct: 381 CTLNREENQ 389
>gi|209524134|ref|ZP_03272685.1| sun protein [Arthrospira maxima CS-328]
gi|376004062|ref|ZP_09781832.1| Ribosomal RNA small subunit methyltransferase B (rRNA
(cytosine-C(5)-)-methyltransferase) [Arthrospira sp. PCC
8005]
gi|423066085|ref|ZP_17054875.1| sun protein [Arthrospira platensis C1]
gi|209495509|gb|EDZ95813.1| sun protein [Arthrospira maxima CS-328]
gi|375327556|emb|CCE17585.1| Ribosomal RNA small subunit methyltransferase B (rRNA
(cytosine-C(5)-)-methyltransferase) [Arthrospira sp. PCC
8005]
gi|406712424|gb|EKD07610.1| sun protein [Arthrospira platensis C1]
Length = 458
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 71/144 (49%), Gaps = 18/144 (12%)
Query: 215 FRASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGG 274
+R S G+ I LP YD +G +Q+ + + + +DPQ GE I+D CAAPGG
Sbjct: 221 WRLSYGVGA-----IANLPG-YD--QGWWTVQDASAQLVGYVVDPQPGEIIIDACAAPGG 272
Query: 275 KTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDE 334
KTT IA L+ D G+++A+DRS ++ +Q+ + L+ I +S
Sbjct: 273 KTTHIAELMGDNGKIIAIDRSPGRLKPLQQNIKRLKLRSIQV----------EVGDSRHF 322
Query: 335 PNMCNSKDNNYITSQTSDSMKLHK 358
P N+ D + + S LH+
Sbjct: 323 PQYNNTADRVLLDAPCSGGGTLHR 346
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 424 NSFDRVLLDAPCSALGLRPRLFAAE--ETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYS 481
N+ DRVLLDAPCS G R A +T +R + Q + + V+PGG++VY+
Sbjct: 327 NTADRVLLDAPCSGGGTLHRRSDARWRQTPDQIRQLSQLQAELLEMVSHWVKPGGVLVYA 386
Query: 482 TCTINPGENEALCA 495
TCT++P ENE A
Sbjct: 387 TCTLHPQENEWAIA 400
>gi|254168829|ref|ZP_04875670.1| NOL1/NOP2/sun family, putative [Aciduliprofundum boonei T469]
gi|197622266|gb|EDY34840.1| NOL1/NOP2/sun family, putative [Aciduliprofundum boonei T469]
Length = 301
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G ++Q+L S+ AL+PQ+GE+ILDM AAPG KTT IA L+R EG +VA D + N++
Sbjct: 85 GYYYIQDLSSMAPVLALNPQRGEKILDMAAAPGSKTTMIAELMR-EGTIVANDINFNRLK 143
Query: 301 DIQKLAAEMGLKCITTYKLDALKA 324
+ +G+ + K DA K
Sbjct: 144 SLGGNLERLGITNVIITKKDAKKG 167
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 53/110 (48%), Gaps = 16/110 (14%)
Query: 397 NMRRMRNGPGRNQCLG------GRAENSKGFSPNSFDRVLLDAPCSALGL---RP---RL 444
N R+++ G + LG + + KG F+++LLDAPCS G P R+
Sbjct: 138 NFNRLKSLGGNLERLGITNVIITKKDAKKGNFGIKFNKILLDAPCSGEGTVRKNPWGFRV 197
Query: 445 FAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEALC 494
E RN Q+ M A + V GGIIVYSTCT NP ENE +
Sbjct: 198 VGDREHKMLARN----QKIMLKNASRHVNNGGIIVYSTCTFNPWENEGVV 243
>gi|345859751|ref|ZP_08812085.1| transcription antitermination factor NusB [Desulfosporosinus sp.
OT]
gi|344327208|gb|EGW38652.1| transcription antitermination factor NusB [Desulfosporosinus sp.
OT]
Length = 451
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 68/130 (52%), Gaps = 11/130 (8%)
Query: 196 ERSGLYIGQGTAMMSRAGIF--RASEGIAVDMHNRIFQ---------LPSFYDVLEGEIF 244
E + +I T +SR + EGI V++ RI + L EG
Sbjct: 176 ESAQTWIRTNTLKISREDLMDRLTQEGITVEVGTRIPESLRIQNFGSLERVESFCEGLFT 235
Query: 245 LQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQK 304
+Q+ S + AH + P+ G+ +LD C+APGGKTT +A ++ +EGE++A D +K+ I +
Sbjct: 236 VQDESSQLVAHVVAPKPGQNVLDACSAPGGKTTHLAQMMGNEGEILAFDVHAHKLEFIDQ 295
Query: 305 LAAEMGLKCI 314
LA +G+ I
Sbjct: 296 LAQRLGITII 305
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 413 GRAENSKGFSPNSFDRVLLDAPCSALG-LRPRL---FAAEETIQSLRNHGKYQRRMFDQA 468
G A + G S RVL+DAPCS LG LR R + EE Q +++ + Q + ++A
Sbjct: 310 GDARDLPGIKLGSQQRVLVDAPCSGLGVLRRRADLRWRKEE--QDIKDLPQLQLAILERA 367
Query: 469 VQLVRPGGIIVYSTCTINPGENEALC 494
V GG ++YSTCTI P EN L
Sbjct: 368 ASCVAVGGDLIYSTCTIEPEENFELV 393
>gi|422419438|ref|ZP_16496393.1| ribosomal RNA small subunit methyltransferase B [Listeria seeligeri
FSL N1-067]
gi|313632754|gb|EFR99722.1| ribosomal RNA small subunit methyltransferase B [Listeria seeligeri
FSL N1-067]
Length = 446
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 58/108 (53%), Gaps = 10/108 (9%)
Query: 396 KNMRRMRNGPGRNQCLGGRAEN------SKGFSPNSFDRVLLDAPCSALGL---RPRLFA 446
K + + + R Q L R + S F+P +FDR+L+DAPCS G+ +P +
Sbjct: 286 KKTKLIDHAAKRLQLLNIRTAHLDARTASTMFAPETFDRILVDAPCSGFGVLRRKPDIKY 345
Query: 447 AEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEALC 494
A+ T + + + Q + D QLV+ GI+VYSTCTI+ ENE +
Sbjct: 346 AK-TEKDIHKLAEIQLAILDDVSQLVKENGILVYSTCTIDKEENETVL 392
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 43/82 (52%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G+ +Q+ S++ +AL + +LD CAAPGGKTT IA + G V A+D K
Sbjct: 229 DGKCSIQDESSMLATYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKT 288
Query: 300 MDIQKLAAEMGLKCITTYKLDA 321
I A + L I T LDA
Sbjct: 289 KLIDHAAKRLQLLNIRTAHLDA 310
>gi|297544782|ref|YP_003677084.1| sun protein [Thermoanaerobacter mathranii subsp. mathranii str. A3]
gi|296842557|gb|ADH61073.1| sun protein [Thermoanaerobacter mathranii subsp. mathranii str. A3]
Length = 444
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 69/119 (57%), Gaps = 10/119 (8%)
Query: 208 MMSRAGIFRA----SEGIAVDMHNRIFQLPSFYDVL-EGEIFLQNLPSIVTAHALDPQKG 262
++SR +++ E + +D+ N P + + EG I++Q+ S++ + L+P +G
Sbjct: 195 LVSRGIVYKKGYYLEEALYIDIKN-----PESHQLYKEGLIYIQDEASMLVSKILNPNEG 249
Query: 263 ERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
E +LD+CAAPGGKTT IA L+++ G VVA D +++ I++ +G+ + D+
Sbjct: 250 ETVLDVCAAPGGKTTHIAQLMKNTGNVVAFDLHPHRLELIKENCKRLGITNVKAEAFDS 308
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 427 DRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTC 483
D+VL D PC+ +G+ +P + T + + Q ++ D + + V+ G +VYSTC
Sbjct: 320 DKVLADVPCTGIGIIRKKPDIKLKNYTKSEISQLVETQYKILDSSSKYVKKDGFLVYSTC 379
Query: 484 TINPGEN 490
TI EN
Sbjct: 380 TIGVEEN 386
>gi|347750545|ref|YP_004858110.1| sun protein [Bacillus coagulans 36D1]
gi|347583063|gb|AEO99329.1| sun protein [Bacillus coagulans 36D1]
Length = 447
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 67/126 (53%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
EG +Q+ S+ A+AL Q+G+RILD CAAPGGKTT IA L GEVVA+D +KV
Sbjct: 230 EGLFTIQDESSMAVAYALCIQEGQRILDACAAPGGKTTHIAEKLEGTGEVVALDLHPHKV 289
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKE 359
+Q+ A +G + +D+ A R ++ + + ++ + + +K K
Sbjct: 290 KLVQENAERLGTGQVEAIAMDSRDAGARFEKNTFDRILVDAPCTGFGVLRRKPDIKYAKT 349
Query: 360 VPSIAA 365
V I A
Sbjct: 350 VDDIHA 355
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 56/101 (55%), Gaps = 5/101 (4%)
Query: 394 TRKNMRRMRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGL---RPRLFAAEET 450
++N R+ G + R ++ F N+FDR+L+DAPC+ G+ +P + A+ T
Sbjct: 292 VQENAERLGTGQVEAIAMDSRDAGAR-FEKNTFDRILVDAPCTGFGVLRRKPDIKYAK-T 349
Query: 451 IQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENE 491
+ + + Q + +L++P GI+V+STCT++ ENE
Sbjct: 350 VDDIHALKQVQLSILSGVSELLKPDGILVFSTCTVDREENE 390
>gi|448439541|ref|ZP_21588105.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum
saccharovorum DSM 1137]
gi|445691075|gb|ELZ43270.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum
saccharovorum DSM 1137]
Length = 316
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 59/111 (53%), Gaps = 8/111 (7%)
Query: 219 EGIA---VDMHNRIFQLPS-----FYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCA 270
EG+A VD H+ +F+LP + + G Q S++ ALDP+ G+R+ D CA
Sbjct: 48 EGVAYEPVDWHDGLFRLPDGNPGGNWPYVHGWTHGQEEVSVLPGLALDPRPGDRVWDACA 107
Query: 271 APGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
APG KTT IA + DEG VVA D + ++ ++ A +G+ DA
Sbjct: 108 APGSKTTQIADAMDDEGTVVANDNNLGRLSALRHNAERLGITNAIVTNQDA 158
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 414 RAENSKGFSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQ 470
R ++K + + FDR L+DAPCS G P + + T+ + Q+ + +AVQ
Sbjct: 159 RNFSTKPLAFDEFDRALVDAPCSCEGTCRKNPDVVD-QWTLDHVHAVAGIQKGILARAVQ 217
Query: 471 LVRPGGIIVYSTCTINPGENEAL 493
RPGG +VYSTCT P ENEA+
Sbjct: 218 ATRPGGTVVYSTCTFAPEENEAV 240
>gi|428781149|ref|YP_007172935.1| ribosomal RNA small subunit methyltransferase RsmB
[Dactylococcopsis salina PCC 8305]
gi|428695428|gb|AFZ51578.1| ribosomal RNA small subunit methyltransferase RsmB
[Dactylococcopsis salina PCC 8305]
Length = 445
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 54/88 (61%), Gaps = 3/88 (3%)
Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
I QLP F EG +Q+ + + ++ L+PQ GE I+D CAAPGGKTT IA L+ D+G
Sbjct: 225 IQQLPGFS---EGWWTVQDFSAQLVSYLLNPQPGETIIDACAAPGGKTTHIAELMGDDGL 281
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKCITT 316
+ A+DR+ +++ + A + K I T
Sbjct: 282 IWALDRASSRLKKVISNAERLQHKSIKT 309
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 427 DRVLLDAPCSALGLRPRL--FAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCT 484
+RVL+DAPCS LG R +T ++L + Q+ + A V+P G +VY+TCT
Sbjct: 325 NRVLVDAPCSGLGTLHRRTDLRWRQTPENLVELSQLQQEILTTAATWVKPKGTLVYATCT 384
Query: 485 INPGENE 491
+NP ENE
Sbjct: 385 LNPLENE 391
>gi|160933495|ref|ZP_02080883.1| hypothetical protein CLOLEP_02341 [Clostridium leptum DSM 753]
gi|156867372|gb|EDO60744.1| ribosomal RNA small subunit methyltransferase B [Clostridium leptum
DSM 753]
Length = 446
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 57/103 (55%), Gaps = 3/103 (2%)
Query: 219 EGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTA 278
+ + ++ I L SF D G +Q+L S + AL P+ GER+ D+CAAPGGKT
Sbjct: 215 QALTLERSGSIESLSSFQD---GFFHVQDLASQLCCQALSPKPGERVYDVCAAPGGKTFT 271
Query: 279 IASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
+A L+ ++GE+ + D KV IQ+ A +GL + DA
Sbjct: 272 MAELMENQGELSSFDLYPAKVKLIQQGAKRLGLSVVNARIRDA 314
Score = 45.8 bits (107), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 7/68 (10%)
Query: 427 DRVLLDAPCSALGL---RPRL-FAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYST 482
D+VL D PCS LG+ +P + + + + SL + Q + + L + G+++YST
Sbjct: 325 DKVLCDVPCSGLGIIRRKPEIRYKNKNMLDSLPD---LQYLILCISANLTKKHGVLLYST 381
Query: 483 CTINPGEN 490
CT+NPGEN
Sbjct: 382 CTLNPGEN 389
>gi|254976172|ref|ZP_05272644.1| ribosomal RNA small subunit methyltransferase [Clostridium
difficile QCD-66c26]
gi|255315305|ref|ZP_05356888.1| ribosomal RNA small subunit methyltransferase [Clostridium
difficile QCD-76w55]
gi|255517973|ref|ZP_05385649.1| ribosomal RNA small subunit methyltransferase [Clostridium
difficile QCD-97b34]
gi|255651089|ref|ZP_05397991.1| ribosomal RNA small subunit methyltransferase [Clostridium
difficile QCD-37x79]
gi|260684154|ref|YP_003215439.1| ribosomal RNA small subunit methyltransferase [Clostridium
difficile CD196]
gi|260687813|ref|YP_003218947.1| ribosomal RNA small subunit methyltransferase [Clostridium
difficile R20291]
gi|306520940|ref|ZP_07407287.1| ribosomal RNA small subunit methyltransferase [Clostridium
difficile QCD-32g58]
gi|384361796|ref|YP_006199648.1| 16S rRNA methyltransferase B [Clostridium difficile BI1]
gi|423092611|ref|ZP_17080415.1| ribosomal RNA small subunit methyltransferase B [Clostridium
difficile 70-100-2010]
gi|260210317|emb|CBA64638.1| ribosomal RNA small subunit methyltransferase [Clostridium
difficile CD196]
gi|260213830|emb|CBE05814.1| ribosomal RNA small subunit methyltransferase [Clostridium
difficile R20291]
gi|357553481|gb|EHJ35228.1| ribosomal RNA small subunit methyltransferase B [Clostridium
difficile 70-100-2010]
Length = 441
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 75/137 (54%), Gaps = 11/137 (8%)
Query: 196 ERSGLYIGQGTAMMSRAGIF-RASE-GIA---VDMHNRIFQLPSFYDVLEGEIF------ 244
E+ +YI T +SR + + SE GI V M ++ ++ + E+F
Sbjct: 174 EKPSIYIRTNTLKISREELIEKLSEMGIVCLKVPMVEEAIKVEKMKNIEKNELFKAGLFT 233
Query: 245 LQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQK 304
+Q++ S++ ++P++G +LD+C+APGGK+T +A+L+ + G+VVA D +K+ I
Sbjct: 234 IQDISSMIVGKVINPKEGSFVLDVCSAPGGKSTHLATLMNNTGQVVARDIFEHKLKLINS 293
Query: 305 LAAEMGLKCITTYKLDA 321
+GLK + + DA
Sbjct: 294 TVNRLGLKNVFVERFDA 310
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 422 SPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGII 478
S + FD VL D PCS G+ +P + +E + L++ Q+++ + A + V+ GG +
Sbjct: 317 SISKFDYVLADVPCSGFGIIRRKPEIKYKKE--EELKDITSIQKKILENASKYVKVGGTL 374
Query: 479 VYSTCTINPGEN 490
VYSTCTI EN
Sbjct: 375 VYSTCTIQDVEN 386
>gi|448528893|ref|ZP_21620273.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum hochstenium
ATCC 700873]
gi|445710341|gb|ELZ62160.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum hochstenium
ATCC 700873]
Length = 321
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 55/105 (52%), Gaps = 5/105 (4%)
Query: 222 AVDMHNRIFQLPS-----FYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKT 276
AVD H+ +F+LP + + G Q S + ALDP+ GER+ D CAAPG KT
Sbjct: 54 AVDWHDGLFRLPDGNPGGNWPYVHGWTHGQEEVSALPGLALDPRPGERVWDACAAPGSKT 113
Query: 277 TAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
T IA + DEG VVA D + ++ ++ A +G+ DA
Sbjct: 114 TQIADAMDDEGTVVANDNNLGRLSALRHNAERLGITNAVVTNQDA 158
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 45/78 (57%), Gaps = 4/78 (5%)
Query: 419 KGFSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPG 475
K + + FDR L+DAPCS G P + E T+ + Q+ + +AVQ RPG
Sbjct: 164 KPLAFDEFDRALVDAPCSCEGTCRKNPDVLD-EWTLDHVHAVAGIQKGVLARAVQATRPG 222
Query: 476 GIIVYSTCTINPGENEAL 493
G++VYSTCT P ENEA+
Sbjct: 223 GVVVYSTCTFAPEENEAV 240
>gi|289578506|ref|YP_003477133.1| sun protein [Thermoanaerobacter italicus Ab9]
gi|289528219|gb|ADD02571.1| sun protein [Thermoanaerobacter italicus Ab9]
Length = 444
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 69/119 (57%), Gaps = 10/119 (8%)
Query: 208 MMSRAGIFRA----SEGIAVDMHNRIFQLPSFYDVL-EGEIFLQNLPSIVTAHALDPQKG 262
++SR +++ E + +D+ N P + + EG I++Q+ S++ + L+P +G
Sbjct: 195 LVSRGIVYKKGYYLEEALYIDIKN-----PESHQLYKEGLIYIQDEASMLVSKILNPNEG 249
Query: 263 ERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
E +LD+CAAPGGKTT IA L+++ G VVA D +++ I++ +G+ + D+
Sbjct: 250 ETVLDVCAAPGGKTTHIAQLMKNTGNVVAFDLHPHRLELIKENCKRLGITNVKAEAFDS 308
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 427 DRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTC 483
D+VL D PC+ +G+ +P + T + + Q ++ D + + V+ G +VYSTC
Sbjct: 320 DKVLADVPCTGIGIIRKKPDIKLKNYTKSEISQLVETQYKILDSSSKYVKKDGFLVYSTC 379
Query: 484 TINPGEN 490
TI EN
Sbjct: 380 TIGVEEN 386
>gi|126700200|ref|YP_001089097.1| 16S rRNA methyltransferase B [Clostridium difficile 630]
gi|115251637|emb|CAJ69470.1| Ribosomal RNA small subunit methyltransferase B (rRNA
(cytosine-C(5)-)-methyltransferase) [Clostridium
difficile 630]
Length = 441
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 75/137 (54%), Gaps = 11/137 (8%)
Query: 196 ERSGLYIGQGTAMMSRAGIF-RASE-GIA---VDMHNRIFQLPSFYDVLEGEIF------ 244
E+ +YI T +SR + + SE GI V M ++ ++ + E+F
Sbjct: 174 EKPSIYIRTNTLKISREELIEKLSEMGIVCLKVPMVEEAIKVEKMKNIEKNELFKAGLFT 233
Query: 245 LQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQK 304
+Q++ S++ ++P++G +LD+C+APGGK+T +A+L+ + G+VVA D +K+ I
Sbjct: 234 IQDISSMIVGKVINPKEGSFVLDVCSAPGGKSTHLATLMNNTGQVVARDIFEHKLKLINS 293
Query: 305 LAAEMGLKCITTYKLDA 321
+GLK + + DA
Sbjct: 294 TVNRLGLKNVFVERFDA 310
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 422 SPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGII 478
S + FD VL D PCS G+ +P + +E + L++ Q+++ + A + V+ GG +
Sbjct: 317 SISKFDYVLADVPCSGFGIIRRKPEIKYKKE--EELKDITSIQKKILENASKYVKVGGTL 374
Query: 479 VYSTCTINPGEN 490
VYSTCTI EN
Sbjct: 375 VYSTCTIQDVEN 386
>gi|240103559|ref|YP_002959868.1| SAM-dependent tRNA/rRNA cytosine-C5 methylase [Thermococcus
gammatolerans EJ3]
gi|239911113|gb|ACS34004.1| SAM-dependent tRNA/rRNA cytosine-C5 methylase [Thermococcus
gammatolerans EJ3]
Length = 312
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 2/73 (2%)
Query: 424 NSFDRVLLDAPCSALGL--RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYS 481
N+FDRVLLDAPCS++G+ + F E +++ + Q+R+ + ++PGG++VYS
Sbjct: 175 NTFDRVLLDAPCSSVGMIRKSWRFLREWREKAVVKYMNIQKRLILAGYKALKPGGVMVYS 234
Query: 482 TCTINPGENEALC 494
TCTI+P ENE +
Sbjct: 235 TCTIDPLENEEVV 247
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 45/89 (50%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G IF Q S++ L+P+ GE +LDM AAPG KT IA + ++G ++A D + ++
Sbjct: 87 GLIFGQEASSMIPPVVLEPRPGELVLDMAAAPGSKTGQIAQYMENDGCIIANDPNRDRAN 146
Query: 301 DIQKLAAEMGLKCITTYKLDALKAVRRKN 329
+ MG+ D K R +N
Sbjct: 147 VLIANLNRMGVLIARVTTRDGAKFARFEN 175
>gi|14590712|ref|NP_142782.1| fmu protein [Pyrococcus horikoshii OT3]
gi|186972907|pdb|2YXL|A Chain A, Crystal Structure Of Ph0851
gi|3257262|dbj|BAA29945.1| 450aa long hypothetical fmu protein [Pyrococcus horikoshii OT3]
Length = 450
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 52/85 (61%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
EG+I +Q S V + LDP+ GE ++D+ AAPGGKTT +A L++++G++ A D ++
Sbjct: 238 EGKIIVQEEASAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRM 297
Query: 300 MDIQKLAAEMGLKCITTYKLDALKA 324
++ MG+K + DA KA
Sbjct: 298 KRLKDFVKRMGIKIVKPLVKDARKA 322
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 12/72 (16%)
Query: 427 DRVLLDAPCSALG-------LRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIV 479
D+VLLDAPC++ G LR RL E+ I + + QR + + A +LV+PGG ++
Sbjct: 332 DKVLLDAPCTSSGTIGKNPELRWRL--REDKINEM---SQLQRELLESAARLVKPGGRLL 386
Query: 480 YSTCTINPGENE 491
Y+TC+I ENE
Sbjct: 387 YTTCSIFKEENE 398
>gi|373454494|ref|ZP_09546360.1| ribosomal RNA small subunit methyltransferase B [Dialister
succinatiphilus YIT 11850]
gi|371935769|gb|EHO63512.1| ribosomal RNA small subunit methyltransferase B [Dialister
succinatiphilus YIT 11850]
Length = 448
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 68/111 (61%), Gaps = 7/111 (6%)
Query: 208 MMSRAGIFRASEGIAVDMHNRIFQLP---SFYDVLE-GEIFLQNLPSIVTAHALDPQKGE 263
MM+ GI +E + D +N + L +F+ + E G ++Q+L S++ A L P++G+
Sbjct: 205 MMAEKGI--KTEAVPWD-NNALILLEGAHAFWPLAEEGLAYVQSLSSMIPAAILSPKEGD 261
Query: 264 RILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCI 314
R+LDMCAAPG KTT +A ++++ G + A D +K+ I+ A ++G+ I
Sbjct: 262 RVLDMCAAPGSKTTQMAEMMKNNGTIDAWDLYPHKISLIKNNAKKLGISII 312
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 8/71 (11%)
Query: 426 FDRVLLDAPCSALGL---RP--RLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
+D+VLLDAPCS LG+ +P R EE L+ Q ++ A V+ GG++VY
Sbjct: 330 YDKVLLDAPCSGLGVLSHKPEIRWHRKEE---DLKEFPPLQEKLLSCAASYVKEGGLLVY 386
Query: 481 STCTINPGENE 491
STCT+NP ENE
Sbjct: 387 STCTLNPAENE 397
>gi|336432507|ref|ZP_08612342.1| hypothetical protein HMPREF0991_01461 [Lachnospiraceae bacterium
2_1_58FAA]
gi|336018844|gb|EGN48581.1| hypothetical protein HMPREF0991_01461 [Lachnospiraceae bacterium
2_1_58FAA]
Length = 460
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 47/76 (61%), Gaps = 8/76 (10%)
Query: 421 FSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHG-----KYQRRMFDQAVQLVRPG 475
+ P FD++L+DAPCS G+ ++ +++ HG K QR + QA ++RPG
Sbjct: 168 YFPEYFDKILIDAPCSGEGM---FRKDKKMVKAWEEHGPEFFSKIQRSIITQAASMLRPG 224
Query: 476 GIIVYSTCTINPGENE 491
G+++YSTCT +P ENE
Sbjct: 225 GMMLYSTCTFDPSENE 240
Score = 45.4 bits (106), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 40/64 (62%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G +LQ ++ A L + G+R+LD+CAAPGGK T + + L+ +G ++A D S+++
Sbjct: 82 GLYYLQEPSAMTPADRLLIEPGDRVLDVCAAPGGKATELGAKLQGKGVLMANDISNSRAK 141
Query: 301 DIQK 304
+ K
Sbjct: 142 GLLK 145
>gi|291526150|emb|CBK91737.1| ribosomal RNA small subunit methyltransferase RsmB [Eubacterium
rectale DSM 17629]
Length = 469
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 64/114 (56%), Gaps = 11/114 (9%)
Query: 218 SEGI---AVDMHNRIFQLPSFYDVL-------EGEIFLQNLPSIVTAHALDPQKGERILD 267
+EG+ AVD N F + F D L +G ++Q++ S++ A P+KG+ ++D
Sbjct: 231 AEGVTVTAVDELNYAFVISGF-DYLNGLQSFRDGLFYVQDISSMLVAQTAAPKKGDYVID 289
Query: 268 MCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
+CAAPGGK+T IA LLR G V A D + NKV I++ GL ++ DA
Sbjct: 290 VCAAPGGKSTHIAELLRGSGHVFARDLTDNKVDMIEENIDRHGLNNMSAEVWDA 343
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 427 DRVLLDAPCSALGL--RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCT 484
D ++ D PCS LG+ R + + T +S+ QR++ D V+P G++VYSTCT
Sbjct: 355 DILICDLPCSGLGVLGRKKDIRYKMTPESVDELVVLQRQILDTVHTYVKPNGVLVYSTCT 414
Query: 485 INPGENE 491
I+ ENE
Sbjct: 415 IDEAENE 421
>gi|293402263|ref|ZP_06646401.1| ribosomal RNA small subunit methyltransferase B
[Erysipelotrichaceae bacterium 5_2_54FAA]
gi|291304370|gb|EFE45621.1| ribosomal RNA small subunit methyltransferase B
[Erysipelotrichaceae bacterium 5_2_54FAA]
Length = 415
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 57/88 (64%), Gaps = 2/88 (2%)
Query: 234 SFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVD 293
S+Y ++G + +Q+ S + A+ +DPQ ERILD+CAAPG K+T +A L++DEGE++ D
Sbjct: 212 SWY--VDGMLSIQDEASQLVAYCVDPQPKERILDVCAAPGTKSTHMAELMQDEGEIICGD 269
Query: 294 RSHNKVMDIQKLAAEMGLKCITTYKLDA 321
++V IQ+ A + L I +DA
Sbjct: 270 IHEHRVELIQQGADRLQLHSIHPIVMDA 297
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 420 GFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQS--LRNHGKYQRRMFDQAVQLVRPGGI 477
G SFDRVL D PCS G+ R + +QS + Q + ++A +V+ GGI
Sbjct: 302 GLQEASFDRVLCDVPCSGYGVLARKSDIKYHMQSEDMDTLIPLQAAILEKASTMVKQGGI 361
Query: 478 IVYSTCTINPGENE 491
+VYSTCT+N ENE
Sbjct: 362 LVYSTCTLNKKENE 375
>gi|194336038|ref|YP_002017832.1| sun protein [Pelodictyon phaeoclathratiforme BU-1]
gi|194308515|gb|ACF43215.1| sun protein [Pelodictyon phaeoclathratiforme BU-1]
Length = 445
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 62/123 (50%), Gaps = 9/123 (7%)
Query: 208 MMSRAGIFRASEGIAVDMH-----NRIFQLPSFYD----VLEGEIFLQNLPSIVTAHALD 258
+ + AG F + +A MH + IF F V++G + +QN + L
Sbjct: 188 LKNSAGRFFSDPAMAAVMHEESGIDNIFLSKDFNAFEPAVIDGRLTVQNPTQALACLLLH 247
Query: 259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYK 318
P G +LD+CAAPGGK T +A L+ + G++ AVDR K+ I+ A +G+ I T
Sbjct: 248 PAPGSNVLDLCAAPGGKATFMAELMENRGQITAVDRYEQKLEKIESHAEALGITIIKTVM 307
Query: 319 LDA 321
DA
Sbjct: 308 EDA 310
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 13/83 (15%)
Query: 416 ENSKGFSPNSF-DRVLLDAPCSALG-------LRPRLFAAEETIQSLRNHGKYQRRMFDQ 467
E+++ F P D +LLDAPC+ G LR +L E +Q L Q + D
Sbjct: 308 EDARSFMPEIHPDAILLDAPCTGTGVLGRRAELRWKL--NPEMLQELL---VLQAELLDH 362
Query: 468 AVQLVRPGGIIVYSTCTINPGEN 490
A +L+ GI+VY+TC+I P EN
Sbjct: 363 AAELLDENGILVYATCSIEPEEN 385
>gi|443724094|gb|ELU12257.1| hypothetical protein CAPTEDRAFT_114718, partial [Capitella teleta]
Length = 423
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 78/162 (48%), Gaps = 26/162 (16%)
Query: 224 DMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLL 283
D+H+ ++Y G I LQ+ S + A AL P G ++D CAAPG KTT +A+++
Sbjct: 197 DLHDH-----TYYKT--GLIILQDKASCIPAFALQPPPGSHVVDCCAAPGNKTTHLAAIM 249
Query: 284 RDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDN 343
+++G V+A DR + + L G CI + D LK +PN KD
Sbjct: 250 QNQGRVIAFDRDMKRFSTMNTLIIRAGASCIRSELKDFLKV---------DPNA--HKDV 298
Query: 344 NYI-----TSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKVSN 380
Y+ S + D +L + S EG +KS EK+SN
Sbjct: 299 RYLLVDPSCSGSGDFCELDDFIES---EGGKQEKSRLEKLSN 337
>gi|154504971|ref|ZP_02041709.1| hypothetical protein RUMGNA_02481 [Ruminococcus gnavus ATCC 29149]
gi|153794854|gb|EDN77274.1| NOL1/NOP2/sun family protein [Ruminococcus gnavus ATCC 29149]
Length = 462
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 47/76 (61%), Gaps = 8/76 (10%)
Query: 421 FSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHG-----KYQRRMFDQAVQLVRPG 475
+ P FD++L+DAPCS G+ ++ +++ HG K QR + QA ++RPG
Sbjct: 170 YFPEYFDKILIDAPCSGEGM---FRKDKKMVKAWEEHGPEFFSKIQRSIITQAASMLRPG 226
Query: 476 GIIVYSTCTINPGENE 491
G+++YSTCT +P ENE
Sbjct: 227 GMMLYSTCTFDPSENE 242
Score = 45.4 bits (106), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 40/64 (62%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G +LQ ++ A L + G+R+LD+CAAPGGK T + + L+ +G ++A D S+++
Sbjct: 84 GLYYLQEPSAMTPADRLLIEPGDRVLDVCAAPGGKATELGAKLQGKGVLMANDISNSRAK 143
Query: 301 DIQK 304
+ K
Sbjct: 144 GLLK 147
>gi|294506884|ref|YP_003570942.1| ribosomal RNA small subunit methyltransferase B [Salinibacter ruber
M8]
gi|294343212|emb|CBH23990.1| Ribosomal RNA small subunit methyltransferase B [Salinibacter ruber
M8]
Length = 448
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 47/85 (55%), Gaps = 8/85 (9%)
Query: 409 QCLGGRAENSKGFSPNSFDRVLLDAPCSALGLRPRL--FAAEETIQSLRNHGKYQRRMFD 466
+ GR E +G DRVLLD PC+ +G+ + +++ L + Q + D
Sbjct: 315 RAWAGRPEPPQG------DRVLLDVPCTGMGVLAKRAGLRWRRSMEDLEEMAELQDELLD 368
Query: 467 QAVQLVRPGGIIVYSTCTINPGENE 491
A QLVRPGG++VYSTCT P ENE
Sbjct: 369 AAAQLVRPGGLLVYSTCTTEPEENE 393
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 55/105 (52%), Gaps = 3/105 (2%)
Query: 223 VDMHNRIFQLPSFY--DVLE-GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAI 279
+D + R+ +L + D+L+ G + +Q+ + + LDPQ GE ++D CAAPGGK
Sbjct: 212 LDRYLRLKRLQALIAGDLLDDGHVAVQDESAGLVVQLLDPQPGETLIDGCAAPGGKAMHA 271
Query: 280 ASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324
A+ + G + AVDR ++ ++ A G + + L+A
Sbjct: 272 AARMEGTGTIYAVDRDEQRLERVETAAEAQGASEMVEAETADLRA 316
>gi|422422526|ref|ZP_16499479.1| ribosomal RNA small subunit methyltransferase B [Listeria seeligeri
FSL S4-171]
gi|313637331|gb|EFS02816.1| ribosomal RNA small subunit methyltransferase B [Listeria seeligeri
FSL S4-171]
Length = 446
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 57/108 (52%), Gaps = 10/108 (9%)
Query: 396 KNMRRMRNGPGRNQCLGGRAEN------SKGFSPNSFDRVLLDAPCSALGL---RPRLFA 446
K + + + R Q L R + S F P +FDR+L+DAPCS G+ +P +
Sbjct: 286 KKTKLIDHAAKRLQLLNIRTAHLDARTASTMFEPETFDRILVDAPCSGFGVLRRKPDIKY 345
Query: 447 AEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEALC 494
A+ T + + + Q + D QLV+ GI+VYSTCTI+ ENE +
Sbjct: 346 AK-TEKDIHKLAEIQLAILDDVSQLVKENGILVYSTCTIDKEENETVL 392
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 43/82 (52%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G+ +Q+ S++ +AL + +LD CAAPGGKTT IA + G V A+D K
Sbjct: 229 DGKCSIQDESSMLATYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKT 288
Query: 300 MDIQKLAAEMGLKCITTYKLDA 321
I A + L I T LDA
Sbjct: 289 KLIDHAAKRLQLLNIRTAHLDA 310
>gi|374607065|ref|ZP_09679871.1| 16S rRNA methyltransferase B [Paenibacillus dendritiformis C454]
gi|374387337|gb|EHQ58853.1| 16S rRNA methyltransferase B [Paenibacillus dendritiformis C454]
Length = 445
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 51/82 (62%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G + +Q+ S++ AL P+ G R+LD CAAPGGK+T IA + D GEV A D +KV
Sbjct: 217 DGRLSVQDESSMLVVEALRPEPGMRVLDCCAAPGGKSTHIAERMGDMGEVTANDIHAHKV 276
Query: 300 MDIQKLAAEMGLKCITTYKLDA 321
I++ AA +GL + +DA
Sbjct: 277 ALIEEQAARLGLTSMRVMSVDA 298
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 48/81 (59%), Gaps = 8/81 (9%)
Query: 415 AENSKGFSPNSFDRVLLDAPCSALGL---RPRLFAA--EETIQSLRNHGKYQRRMFDQAV 469
AE + SFD VLLDAPC+ G+ +P + A EE + ++ Q R+ +A
Sbjct: 299 AELGQALPQASFDVVLLDAPCTGFGVIRRKPDIKWAKREEDVAAI---ASLQERLLTEAA 355
Query: 470 QLVRPGGIIVYSTCTINPGEN 490
++VRPGG +VYSTCT+ P EN
Sbjct: 356 RMVRPGGRLVYSTCTVEPEEN 376
>gi|448424074|ref|ZP_21582200.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum terrestre
JCM 10247]
gi|445682739|gb|ELZ35152.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum terrestre
JCM 10247]
Length = 309
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 55/104 (52%), Gaps = 5/104 (4%)
Query: 223 VDMHNRIFQLPS-----FYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTT 277
VD H+ +F+LP + + G Q S++ ALDP+ GER+ D CAAPG KTT
Sbjct: 55 VDWHDGLFRLPDGNPGGNWPYVHGWTHGQEEVSVLPTLALDPRPGERVWDACAAPGSKTT 114
Query: 278 AIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
IA + DEG VVA D + ++ ++ A +G+ DA
Sbjct: 115 QIADAMDDEGTVVANDNNLGRLSALRHNAERLGITNAIVTNQDA 158
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Query: 413 GRAENSKGFSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAV 469
R ++K + + FDR L+DAPCS G P + + T+ + Q+ + +AV
Sbjct: 158 ARNFSTKPLAFDEFDRALVDAPCSCEGTCRKNPDVLD-QWTLDHVHAVAGIQKGVLARAV 216
Query: 470 QLVRPGGIIVYSTCTINPGENEAL 493
Q RPGG++VYSTCT P ENEA+
Sbjct: 217 QATRPGGVVVYSTCTFAPEENEAV 240
>gi|238019375|ref|ZP_04599801.1| hypothetical protein VEIDISOL_01239 [Veillonella dispar ATCC 17748]
gi|237864074|gb|EEP65364.1| hypothetical protein VEIDISOL_01239 [Veillonella dispar ATCC 17748]
Length = 451
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 51/79 (64%)
Query: 238 VLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHN 297
V++G I + S++ AH +DPQ GERILD CAAPGGK+ +ASL+ + G +++ D +
Sbjct: 238 VIDGHITFMDKASMLVAHVVDPQPGERILDCCAAPGGKSMHMASLMNNTGAIMSCDIYDH 297
Query: 298 KVMDIQKLAAEMGLKCITT 316
K+ + A +G+ ++T
Sbjct: 298 KLDLMNHNAQRLGVSIVST 316
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 426 FDRVLLDAPCSALG-LRPRLFAAEETIQSLRNH-GKYQRRMFDQAVQLVRPGGIIVYSTC 483
FDRVL+DAPCS LG L+ +L +SL Q + ++A ++V+ G +VYSTC
Sbjct: 332 FDRVLVDAPCSGLGILQKKLDMRWRKTESLLTELPPLQLEILEKAAEMVKVNGYLVYSTC 391
Query: 484 TINPGENE 491
TIN GENE
Sbjct: 392 TINSGENE 399
>gi|65321192|ref|ZP_00394151.1| COG0144: tRNA and rRNA cytosine-C5-methylases [Bacillus anthracis
str. A2012]
Length = 444
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 56/85 (65%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G + +Q+ S++ A AL+P +G+ ILD CAAPGGKTT IA L+ G+V+++D +KV
Sbjct: 227 KGFLSIQDESSMLVARALEPDEGDVILDSCAAPGGKTTHIAERLKGTGQVMSLDLHAHKV 286
Query: 300 MDIQKLAAEMGLKCITTYKLDALKA 324
I++ A + L+ + T LDA K
Sbjct: 287 RLIKQQAERLXLENVETKALDARKV 311
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F+ FD++L+DAPCS G+ +P + ++ S R Q + ++ L++ GG
Sbjct: 315 FANEXFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSER-LSMIQFAILEKXAPLLKQGGR 373
Query: 478 IVYSTCTINPGENE 491
+VYSTCTI ENE
Sbjct: 374 LVYSTCTIEKIENE 387
>gi|407016143|gb|EKE29905.1| fmu (sun) protein [uncultured bacterium (gcode 4)]
Length = 312
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 418 SKGFSPNSFDRVLLDAPCSA---LGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRP 474
SK F P +FD++LLDAPCSA + + TI+++R + Q + + + L++
Sbjct: 172 SKNFEPETFDKILLDAPCSAEWRININNEKTFWFWTIENIRKKHELQMDLIEHVIPLLKK 231
Query: 475 GGIIVYSTCTINPGENE 491
G +VYSTCT+ P ENE
Sbjct: 232 WGTLVYSTCTLAPEENE 248
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 6/85 (7%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G+I++Q + S + A L P K + ILD+ AAP KTT +A++ + +VA +++ +
Sbjct: 88 GKIYVQWIASQIPAIVLSPVKWDIILDVTAAPWSKTTQMAAMTNNSCRIVAAEKNQ---I 144
Query: 301 DIQKLAAEMGLKCIT---TYKLDAL 322
KL + L+ +T T K+DAL
Sbjct: 145 RFDKLNYNLKLQWVTCTQTVKIDAL 169
>gi|448591436|ref|ZP_21650924.1| tRNA and rRNA cytosine-C5-methylase [Haloferax elongans ATCC
BAA-1513]
gi|445733410|gb|ELZ84979.1| tRNA and rRNA cytosine-C5-methylase [Haloferax elongans ATCC
BAA-1513]
Length = 313
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 65/125 (52%), Gaps = 16/125 (12%)
Query: 209 MSRAGIFRASEGIA---VDMHNRIFQL---------PSFYDVLEGEIFLQNLPSIVTAHA 256
++RA EG+A D H I +L P F+ L G+ + LP+I A
Sbjct: 38 VARAREALDDEGVAYEPTDWHPGILKLEDSSPGTNWPYFHGWLHGQEEVSALPAI----A 93
Query: 257 LDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITT 316
LDPQ GE++ D CAAPG KTT IA+++ DEG +V D + ++ ++ A +G+ +
Sbjct: 94 LDPQPGEKVWDTCAAPGSKTTQIAAMMDDEGVLVGNDNNLGRLSALRHNAERLGVTNLAV 153
Query: 317 YKLDA 321
DA
Sbjct: 154 TNQDA 158
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 426 FDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYST 482
FDRVL+DAPCS G P + E + + + Q+ + +AVQ+ +PGG +VYST
Sbjct: 180 FDRVLVDAPCSCEGTCRKNPDVLD-EWHMGHVESVAGIQKGILRRAVQVTKPGGTVVYST 238
Query: 483 CTINPGENEAL 493
CT P ENEA+
Sbjct: 239 CTFAPEENEAV 249
>gi|282882115|ref|ZP_06290756.1| ribosomal RNA small subunit methyltransferase B [Peptoniphilus
lacrimalis 315-B]
gi|281298145|gb|EFA90600.1| ribosomal RNA small subunit methyltransferase B [Peptoniphilus
lacrimalis 315-B]
Length = 430
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 58/99 (58%), Gaps = 3/99 (3%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
EG + Q+ SI + L+P+K ILD+CAAPGGK+T + ++L + G++VA D+S K+
Sbjct: 227 EGFFYAQDFSSIKVSQILNPKKNSTILDLCAAPGGKSTHLGAILENTGQIVACDKSLYKL 286
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMC 338
I+ A +G+ I K+ A + N+ D+ + C
Sbjct: 287 DLIKDNAKRLGVSNI---KVSINDASKYNNDFEDKFDYC 322
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 48/73 (65%), Gaps = 4/73 (5%)
Query: 424 NSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
+ FD L+DAPCSA+GL +P + +++ ++N + Q+ + + A + V+ GG+++Y
Sbjct: 317 DKFDYCLVDAPCSAIGLYRKKPDI-KWNRSLEDIKNLAQIQKNIINNAGRYVKKGGVLIY 375
Query: 481 STCTINPGENEAL 493
STC+++ ENE +
Sbjct: 376 STCSLSYSENEGV 388
>gi|448512219|ref|ZP_21616333.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum distributum
JCM 9100]
gi|448520842|ref|ZP_21618175.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum distributum
JCM 10118]
gi|445694539|gb|ELZ46664.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum distributum
JCM 9100]
gi|445702978|gb|ELZ54917.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum distributum
JCM 10118]
Length = 309
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 55/104 (52%), Gaps = 5/104 (4%)
Query: 223 VDMHNRIFQLPS-----FYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTT 277
VD H+ +F+LP + + G Q S++ ALDP+ GER+ D CAAPG KTT
Sbjct: 55 VDWHDGLFRLPDGNPGGNWPYVHGWTHGQEEVSVLPTLALDPRPGERVWDACAAPGSKTT 114
Query: 278 AIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
IA + DEG VVA D + ++ ++ A +G+ DA
Sbjct: 115 QIADAMDDEGTVVANDNNLGRLSALRHNAERLGITNAIVTNQDA 158
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 414 RAENSKGFSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQ 470
R ++K + FDR L+DAPCS G P + + T+ + Q+ + +AVQ
Sbjct: 159 RNFSTKPLGFDEFDRALVDAPCSCEGTCRKNPDVLD-QWTLDHVHAVAGIQKGVLARAVQ 217
Query: 471 LVRPGGIIVYSTCTINPGENEAL 493
RPGG++VYSTCT P ENEA+
Sbjct: 218 ATRPGGVVVYSTCTFAPEENEAV 240
>gi|448478964|ref|ZP_21603970.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum arcis JCM
13916]
gi|445822794|gb|EMA72556.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum arcis JCM
13916]
Length = 309
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 55/104 (52%), Gaps = 5/104 (4%)
Query: 223 VDMHNRIFQLPS-----FYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTT 277
VD H+ +F+LP + + G Q S++ ALDP+ GER+ D CAAPG KTT
Sbjct: 55 VDWHDGLFRLPDGNPGGNWPYVHGWTHGQEEVSVLPTLALDPRPGERVWDACAAPGSKTT 114
Query: 278 AIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
IA + DEG VVA D + ++ ++ A +G+ DA
Sbjct: 115 QIADAMDDEGTVVANDNNLGRLSALRHNAERLGITNAIVTNQDA 158
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 4/83 (4%)
Query: 414 RAENSKGFSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQ 470
R ++K + + FDR L+DAPCS G P + + T+ + Q+ + +AVQ
Sbjct: 159 RNFSTKPLAFDEFDRALVDAPCSCEGTCRKNPDVLD-QWTLDHVHAVAGIQKGVLARAVQ 217
Query: 471 LVRPGGIIVYSTCTINPGENEAL 493
RPGG++VYSTCT P ENEA+
Sbjct: 218 ATRPGGVVVYSTCTFAPEENEAV 240
>gi|448474110|ref|ZP_21602078.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum aidingense
JCM 13560]
gi|445818390|gb|EMA68249.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum aidingense
JCM 13560]
Length = 310
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 59/111 (53%), Gaps = 8/111 (7%)
Query: 219 EGIA---VDMHNRIFQLPS-----FYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCA 270
EG+A V+ H+ +F+LP + + G Q S++ ALDPQ GER+ D CA
Sbjct: 48 EGVAYEPVEWHDGLFRLPDGNPGGNWPYVHGWTHGQEEVSVLPGLALDPQPGERVWDACA 107
Query: 271 APGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
APG KTT IA + D+G VVA D + ++ ++ A +G+ DA
Sbjct: 108 APGSKTTQIADAMDDDGTVVANDNNLGRLSALRHNAERLGVTNAIVTNQDA 158
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 414 RAENSKGFSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQ 470
R ++K + + FDR L+DAPCS G P + + T+ + Q+ + +AVQ
Sbjct: 159 RNFSTKPLAFDEFDRALVDAPCSCEGTCRKNPDVVD-QWTLDHVHGVAGIQKGILARAVQ 217
Query: 471 LVRPGGIIVYSTCTINPGENEAL 493
RPGG +VYSTCT P ENEA+
Sbjct: 218 ATRPGGTVVYSTCTFAPEENEAV 240
>gi|255522012|ref|ZP_05389249.1| sun protein [Listeria monocytogenes FSL J1-175]
Length = 444
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 56/108 (51%), Gaps = 10/108 (9%)
Query: 396 KNMRRMRNGPGRNQCLGGRAEN------SKGFSPNSFDRVLLDAPCSALGL---RPRLFA 446
K + + R Q L R + S F P +FDR+L+DAPCS G+ +P +
Sbjct: 286 KKTKLIDQAAKRLQLLNIRTAHLDARTASTMFEPETFDRILVDAPCSGFGVLRRKPDIKY 345
Query: 447 AEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEALC 494
A+ T + + + Q + D QLV+ GI+VYSTCTI+ ENE +
Sbjct: 346 AK-TEKDIHKLAEIQLAILDDVSQLVKENGILVYSTCTIDKEENETVL 392
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 45/82 (54%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G+ +Q+ S++ A+AL + +LD CAAPGGKTT IA + G V A+D K
Sbjct: 229 DGKCSIQDESSMLAAYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKT 288
Query: 300 MDIQKLAAEMGLKCITTYKLDA 321
I + A + L I T LDA
Sbjct: 289 KLIDQAAKRLQLLNIRTAHLDA 310
>gi|448448406|ref|ZP_21591219.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum litoreum
JCM 13561]
gi|445814822|gb|EMA64780.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum litoreum
JCM 13561]
Length = 309
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 55/104 (52%), Gaps = 5/104 (4%)
Query: 223 VDMHNRIFQLPS-----FYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTT 277
VD H+ +F+LP + + G Q S++ ALDP+ GER+ D CAAPG KTT
Sbjct: 55 VDWHDGLFRLPDGNPGGNWPYVHGWTHGQEEVSVLPTLALDPRPGERVWDACAAPGSKTT 114
Query: 278 AIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
IA + DEG VVA D + ++ ++ A +G+ DA
Sbjct: 115 QIADAMDDEGTVVANDNNLGRLSALRHNAERLGITNAIVTNQDA 158
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Query: 413 GRAENSKGFSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAV 469
R ++K + + FDR L+DAPCS G P + + T+ + Q+ + +AV
Sbjct: 158 ARNFSTKPLAFDEFDRALVDAPCSCEGTCRKNPDVLD-QWTLDHVHAVAGIQKGVLARAV 216
Query: 470 QLVRPGGIIVYSTCTINPGENEAL 493
Q RPGG++VYSTCT P ENEA+
Sbjct: 217 QATRPGGVVVYSTCTFAPEENEAV 240
>gi|47096543|ref|ZP_00234133.1| sun protein [Listeria monocytogenes str. 1/2a F6854]
gi|254912380|ref|ZP_05262392.1| sun protein [Listeria monocytogenes J2818]
gi|254936707|ref|ZP_05268404.1| sun protein [Listeria monocytogenes F6900]
gi|386047475|ref|YP_005965807.1| ribosomal RNA small subunit methyltransferase B [Listeria
monocytogenes J0161]
gi|47015075|gb|EAL06018.1| sun protein [Listeria monocytogenes serotype 1/2a str. F6854]
gi|258609304|gb|EEW21912.1| sun protein [Listeria monocytogenes F6900]
gi|293590362|gb|EFF98696.1| sun protein [Listeria monocytogenes J2818]
gi|345534466|gb|AEO03907.1| ribosomal RNA small subunit methyltransferase B [Listeria
monocytogenes J0161]
gi|441471583|emb|CCQ21338.1| Ribosomal RNA small subunit methyltransferase B [Listeria
monocytogenes]
gi|441474715|emb|CCQ24469.1| Ribosomal RNA small subunit methyltransferase B [Listeria
monocytogenes N53-1]
Length = 444
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 56/108 (51%), Gaps = 10/108 (9%)
Query: 396 KNMRRMRNGPGRNQCLGGRAEN------SKGFSPNSFDRVLLDAPCSALGL---RPRLFA 446
K + + R Q L R + S F P +FDR+L+DAPCS G+ +P +
Sbjct: 286 KKTKLIDEAAKRLQLLNIRTAHLDARTASTMFEPETFDRILVDAPCSGFGVLRRKPDIKY 345
Query: 447 AEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEALC 494
A+ T + + + Q + D QLV+ GI+VYSTCTI+ ENE +
Sbjct: 346 AK-TEKDIHKLAEIQLTILDDVSQLVKENGILVYSTCTIDKEENETVL 392
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 45/82 (54%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G+ +Q+ S++ A+AL + +LD CAAPGGKTT IA + G V A+D K
Sbjct: 229 DGKCSIQDESSMLAAYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKT 288
Query: 300 MDIQKLAAEMGLKCITTYKLDA 321
I + A + L I T LDA
Sbjct: 289 KLIDEAAKRLQLLNIRTAHLDA 310
>gi|334340862|ref|YP_004545842.1| sun protein [Desulfotomaculum ruminis DSM 2154]
gi|334092216|gb|AEG60556.1| sun protein [Desulfotomaculum ruminis DSM 2154]
Length = 453
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 60/107 (56%), Gaps = 1/107 (0%)
Query: 216 RASEGIAVDMH-NRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGG 274
R S+ + +H N S EG +Q+ S++ AHAL+P G ++LD+ +APGG
Sbjct: 209 RESQYVPEGLHINGFLSYRSLDSFKEGLFQVQDESSMLVAHALNPASGAKVLDVASAPGG 268
Query: 275 KTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
KTT +A L+ D GE++AVD +K+ I++ +G+ I DA
Sbjct: 269 KTTHVAQLMGDSGEIIAVDIHSHKLELIKENCVRLGITSIHGLVADA 315
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 427 DRVLLDAPCSALGLRPRLFAAEETIQSLRNHG--KYQRRMFDQAVQLVRPGGIIVYSTCT 484
D VL+DAPCS LG+ R + + G + Q+ + A + +RPGG+++YSTCT
Sbjct: 327 DYVLVDAPCSGLGVLRRRPDSRWRRDPCQLPGVVRLQKDILQAAGRCLRPGGVLIYSTCT 386
Query: 485 INPGEN 490
I EN
Sbjct: 387 ITREEN 392
>gi|19074454|ref|NP_585960.1| NOP2-LIKE NUCLEOLAR PROTEIN [Encephalitozoon cuniculi GB-M1]
gi|19069096|emb|CAD25564.1| NOP2-LIKE NUCLEOLAR PROTEIN [Encephalitozoon cuniculi GB-M1]
gi|449330099|gb|AGE96363.1| nop2-like nucleolar protein [Encephalitozoon cuniculi]
Length = 364
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 49/71 (69%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G+ +QN+ S + AH LDP++G R++D C+APG KT+ +A ++R+ G++ A +RS N+
Sbjct: 156 GKFVIQNISSCLPAHILDPEEGSRVIDTCSAPGNKTSQLAMIMRNTGKIYAFERSKNRAE 215
Query: 301 DIQKLAAEMGL 311
++ ++G+
Sbjct: 216 TLRAQLFKLGV 226
>gi|270013829|gb|EFA10277.1| hypothetical protein TcasGA2_TC012481 [Tribolium castaneum]
Length = 767
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 92/206 (44%), Gaps = 27/206 (13%)
Query: 131 KCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQT 190
K + +L QV + S VE+ + VE+P L IT ++G +
Sbjct: 98 KPVQTILAYEQVLKAHLSDVSDDVEEVE------QVEKPRYVRVNTLKITVNEAIEGFRE 151
Query: 191 DPYYFER---SGLYIGQGTAMMSRAGIFRASEGIAVDMH----------NRIFQLPSFYD 237
+ + +R S Y+G A+ S G S VD+H +Q ++ +
Sbjct: 152 EGWVLKRYTDSENYLGFLEAV-SNLG----SNEFMVDLHIPYLLIFPPKTEFYQHAAYKN 206
Query: 238 VLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHN 297
G I LQ+ S + H LDPQ G ILDMCAAPG KTT A+L+ + G++ AV+
Sbjct: 207 ---GSIILQDKASCLPVHILDPQPGTSILDMCAAPGMKTTQCAALIDNIGKIYAVEIGTK 263
Query: 298 KVMDIQKLAAEMGLKCITTYKLDALK 323
+ ++K+ G C+ D L+
Sbjct: 264 RFHTLEKIVESSGASCVEPINSDVLQ 289
>gi|226224425|ref|YP_002758532.1| RNA-binding Sun protein [Listeria monocytogenes serotype 4b str.
CLIP 80459]
gi|386732562|ref|YP_006206058.1| 16S rRNA methyltransferase B [Listeria monocytogenes 07PF0776]
gi|406704606|ref|YP_006754960.1| tRNA and rRNA cytosine-C5-methylase, putative [Listeria
monocytogenes L312]
gi|225876887|emb|CAS05596.1| Putative RNA-binding Sun protein [Listeria monocytogenes serotype
4b str. CLIP 80459]
gi|384391320|gb|AFH80390.1| 16S rRNA methyltransferase B [Listeria monocytogenes 07PF0776]
gi|406361636|emb|CBY67909.1| tRNA and rRNA cytosine-C5-methylase, putative [Listeria
monocytogenes L312]
Length = 444
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 56/108 (51%), Gaps = 10/108 (9%)
Query: 396 KNMRRMRNGPGRNQCLGGRAEN------SKGFSPNSFDRVLLDAPCSALGL---RPRLFA 446
K + + R Q L R + S F P +FDR+L+DAPCS G+ +P +
Sbjct: 286 KKTKLIDQAAKRLQLLNIRTAHLDARTASTMFEPETFDRILVDAPCSGFGVLRRKPDIKY 345
Query: 447 AEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEALC 494
A+ T + + + Q + D QLV+ GI+VYSTCTI+ ENE +
Sbjct: 346 AK-TEKDIHKLAEIQLAILDDVSQLVKENGILVYSTCTIDKEENETVL 392
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 45/82 (54%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G+ +Q+ S++ A+AL + +LD CAAPGGKTT IA + G V A+D K
Sbjct: 229 DGKCSIQDESSMLAAYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKT 288
Query: 300 MDIQKLAAEMGLKCITTYKLDA 321
I + A + L I T LDA
Sbjct: 289 KLIDQAAKRLQLLNIRTAHLDA 310
>gi|417315470|ref|ZP_12102146.1| 16S rRNA methyltransferase B [Listeria monocytogenes J1816]
gi|328466174|gb|EGF37331.1| 16S rRNA methyltransferase B [Listeria monocytogenes J1816]
Length = 399
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 56/108 (51%), Gaps = 10/108 (9%)
Query: 396 KNMRRMRNGPGRNQCLGGRAEN------SKGFSPNSFDRVLLDAPCSALGL---RPRLFA 446
K + + R Q L R + S F P +FDR+L+DAPCS G+ +P +
Sbjct: 241 KKTKLIDQAAKRLQLLNIRTAHLDARTASTMFEPETFDRILVDAPCSGFGVLRRKPDIKY 300
Query: 447 AEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEALC 494
A+ T + + + Q + D QLV+ GI+VYSTCTI+ ENE +
Sbjct: 301 AK-TEKDIHKLAEIQLAILDDVSQLVKENGILVYSTCTIDKEENETVL 347
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 45/82 (54%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G+ +Q+ S++ A+AL + +LD CAAPGGKTT IA + G V A+D K
Sbjct: 184 DGKCSIQDESSMLAAYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKT 243
Query: 300 MDIQKLAAEMGLKCITTYKLDA 321
I + A + L I T LDA
Sbjct: 244 KLIDQAAKRLQLLNIRTAHLDA 265
>gi|153814848|ref|ZP_01967516.1| hypothetical protein RUMTOR_01063 [Ruminococcus torques ATCC 27756]
gi|331089630|ref|ZP_08338529.1| hypothetical protein HMPREF1025_02112 [Lachnospiraceae bacterium
3_1_46FAA]
gi|145847879|gb|EDK24797.1| NOL1/NOP2/sun family protein [Ruminococcus torques ATCC 27756]
gi|330404998|gb|EGG84536.1| hypothetical protein HMPREF1025_02112 [Lachnospiraceae bacterium
3_1_46FAA]
Length = 468
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 47/76 (61%), Gaps = 8/76 (10%)
Query: 421 FSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHG-----KYQRRMFDQAVQLVRPG 475
+ P FD++L+DAPCS G+ + +++ HG K QR + QA Q+++PG
Sbjct: 168 YFPEYFDKILIDAPCSGEGM---FRKDRKMVKAWEEHGPEFFVKIQRSIITQAAQMLKPG 224
Query: 476 GIIVYSTCTINPGENE 491
G+++YSTCT +P ENE
Sbjct: 225 GMLLYSTCTFSPEENE 240
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 39/64 (60%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G +LQ ++ A+ L + G+R+LD+CAAPGGK T + + L G ++A D S+++
Sbjct: 82 GLYYLQEPSAMTPANRLPIEAGDRVLDVCAAPGGKATELGAKLNGSGVLIANDLSNSRAR 141
Query: 301 DIQK 304
+ K
Sbjct: 142 GLLK 145
>gi|57640295|ref|YP_182773.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus kodakarensis KOD1]
gi|57158619|dbj|BAD84549.1| tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family [Thermococcus
kodakarensis KOD1]
Length = 312
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 2/73 (2%)
Query: 424 NSFDRVLLDAPCSALGL--RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYS 481
N+FDRVLLDAPCS++G+ + F E +++ + Q+R+ + ++PGG++VYS
Sbjct: 175 NTFDRVLLDAPCSSVGMIRKSWRFLREWREKAVVKYMNVQKRLILAGYRALKPGGVMVYS 234
Query: 482 TCTINPGENEALC 494
TCTI+P ENE +
Sbjct: 235 TCTIDPLENEEVV 247
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNK 298
G +F Q S++ LDP+ GE +LDM AAPG KT IA +++EG ++A D + ++
Sbjct: 87 GLVFGQEASSMIPPVVLDPKPGELVLDMAAAPGSKTGQIAQYMQNEGCIIANDPNRDR 144
>gi|365157094|ref|ZP_09353375.1| ribosomal RNA small subunit methyltransferase B [Bacillus smithii
7_3_47FAA]
gi|363625828|gb|EHL76839.1| ribosomal RNA small subunit methyltransferase B [Bacillus smithii
7_3_47FAA]
Length = 446
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 49/76 (64%), Gaps = 8/76 (10%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RP--RLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPG 475
F P SFDR+L+DAPCS LG+ +P + +E +QSL+ K Q + D L++ G
Sbjct: 318 FPPQSFDRILVDAPCSGLGVLRRKPDIKYVKKQEDLQSLQ---KIQLEILDAQAPLLKSG 374
Query: 476 GIIVYSTCTINPGENE 491
G++VYSTCT++ ENE
Sbjct: 375 GLLVYSTCTVDQEENE 390
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 54/84 (64%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G + +Q+ S++ AHA+ + G +LD CAAPGGKTT +A ++ G+V A+D +K+
Sbjct: 230 KGLMTIQDESSMLVAHAMKLEPGMVVLDACAAPGGKTTHMAEKMQGTGKVYALDLHPHKI 289
Query: 300 MDIQKLAAEMGLKCITTYKLDALK 323
I+ A +GL+ I++ LD+ K
Sbjct: 290 KLIEDNAVRLGLENISSLPLDSRK 313
>gi|260434429|ref|ZP_05788399.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
WH 8109]
gi|260412303|gb|EEX05599.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
WH 8109]
Length = 445
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 47/75 (62%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
EG +Q+ + A LDP+ G+RILD CAAPGGK T +A L+ D+ E+ AVDRS ++
Sbjct: 243 EGHWCVQDCSAQWIAPLLDPKPGDRILDACAAPGGKATHLAELVGDQAEIWAVDRSAGRL 302
Query: 300 MDIQKLAAEMGLKCI 314
+ AA +GL I
Sbjct: 303 KRVVANAARLGLASI 317
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 424 NSFDRVLLDAPCSALGLRPRLFAAEE--TIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYS 481
SF R+L+DAPCS LG R A T QS+R Q+ + D + L+ P G++VY+
Sbjct: 336 ESFQRILIDAPCSGLGTLARHPDARWRVTPQSVRGLLPQQQALLDGLLPLLAPQGVLVYA 395
Query: 482 TCTINPGENE 491
TCTI+P EN+
Sbjct: 396 TCTIHPDENQ 405
>gi|116873257|ref|YP_850038.1| sun protein [Listeria welshimeri serovar 6b str. SLCC5334]
gi|116742135|emb|CAK21259.1| sun protein [Listeria welshimeri serovar 6b str. SLCC5334]
Length = 444
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 56/108 (51%), Gaps = 10/108 (9%)
Query: 396 KNMRRMRNGPGRNQCLGGRAEN------SKGFSPNSFDRVLLDAPCSALGL---RPRLFA 446
K + + R Q L R + S F P +FDR+L+DAPCS G+ +P +
Sbjct: 286 KKTKLIDQAAKRLQLLNIRTAHQDARTASTMFEPETFDRILVDAPCSGFGVLRRKPDIKY 345
Query: 447 AEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEALC 494
A+ T + + + Q + D QLV+ GI+VYSTCTI+ ENE +
Sbjct: 346 AK-TEKDIHKLAEIQLAILDDVSQLVKENGILVYSTCTIDKEENETVL 392
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 44/82 (53%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G+ +Q+ S++ A+AL + +LD CAAPGGKTT IA + G V A+D K
Sbjct: 229 DGKCSIQDESSMLAAYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKT 288
Query: 300 MDIQKLAAEMGLKCITTYKLDA 321
I + A + L I T DA
Sbjct: 289 KLIDQAAKRLQLLNIRTAHQDA 310
>gi|333447643|ref|ZP_08482585.1| ribosomal RNA small subunit methyltransferase F [Leuconostoc inhae
KCTC 3774]
Length = 373
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 49/75 (65%), Gaps = 2/75 (2%)
Query: 423 PNSFDRVLLDAPCSALGL-RPRLFAAEETIQSL-RNHGKYQRRMFDQAVQLVRPGGIIVY 480
P FD++LLDAPCS G+ R + A ++ + + + QR + +AV+++RPGG I+Y
Sbjct: 52 PQYFDKILLDAPCSGEGMFRKNITAIKQWHKDFPQELAELQREILHEAVKMLRPGGQIIY 111
Query: 481 STCTINPGENEALCA 495
STCT +P E+E + A
Sbjct: 112 STCTFSPEEDEQMIA 126
>gi|46908054|ref|YP_014443.1| sun protein [Listeria monocytogenes serotype 4b str. F2365]
gi|47093059|ref|ZP_00230837.1| sun protein [Listeria monocytogenes str. 4b H7858]
gi|254826136|ref|ZP_05231137.1| sun protein [Listeria monocytogenes FSL J1-194]
gi|254852729|ref|ZP_05242077.1| sun protein [Listeria monocytogenes FSL R2-503]
gi|254933294|ref|ZP_05266653.1| sun protein [Listeria monocytogenes HPB2262]
gi|300763865|ref|ZP_07073862.1| sun protein [Listeria monocytogenes FSL N1-017]
gi|404281435|ref|YP_006682333.1| tRNA and rRNA cytosine-C5-methylase [Listeria monocytogenes
SLCC2755]
gi|404287251|ref|YP_006693837.1| tRNA and rRNA cytosine-C5-methylase [Listeria monocytogenes
serotype 7 str. SLCC2482]
gi|405750174|ref|YP_006673640.1| tRNA and rRNA cytosine-C5-methylase [Listeria monocytogenes ATCC
19117]
gi|405753049|ref|YP_006676514.1| tRNA and rRNA cytosine-C5-methylase [Listeria monocytogenes
SLCC2378]
gi|405755983|ref|YP_006679447.1| tRNA and rRNA cytosine-C5-methylase [Listeria monocytogenes
SLCC2540]
gi|424714697|ref|YP_007015412.1| Ribosomal RNA small subunit methyltransferase B [Listeria
monocytogenes serotype 4b str. LL195]
gi|424823583|ref|ZP_18248596.1| Ribosomal RNA small subunit methyltransferase B [Listeria
monocytogenes str. Scott A]
gi|46881324|gb|AAT04620.1| sun protein [Listeria monocytogenes serotype 4b str. F2365]
gi|47018560|gb|EAL09315.1| sun protein [Listeria monocytogenes serotype 4b str. H7858]
gi|258606052|gb|EEW18660.1| sun protein [Listeria monocytogenes FSL R2-503]
gi|293584854|gb|EFF96886.1| sun protein [Listeria monocytogenes HPB2262]
gi|293595376|gb|EFG03137.1| sun protein [Listeria monocytogenes FSL J1-194]
gi|300515601|gb|EFK42651.1| sun protein [Listeria monocytogenes FSL N1-017]
gi|332312263|gb|EGJ25358.1| Ribosomal RNA small subunit methyltransferase B [Listeria
monocytogenes str. Scott A]
gi|404219374|emb|CBY70738.1| tRNA and rRNA cytosine-C5-methylase, putative [Listeria
monocytogenes ATCC 19117]
gi|404222249|emb|CBY73612.1| putative tRNA and rRNA cytosine-C5-methylase [Listeria
monocytogenes SLCC2378]
gi|404225183|emb|CBY76545.1| putative tRNA and rRNA cytosine-C5-methylase [Listeria
monocytogenes SLCC2540]
gi|404228070|emb|CBY49475.1| putative tRNA and rRNA cytosine-C5-methylase [Listeria
monocytogenes SLCC2755]
gi|404246180|emb|CBY04405.1| tRNA and rRNA cytosine-C5-methylase, putative [Listeria
monocytogenes serotype 7 str. SLCC2482]
gi|424013881|emb|CCO64421.1| Ribosomal RNA small subunit methyltransferase B [Listeria
monocytogenes serotype 4b str. LL195]
Length = 444
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 56/108 (51%), Gaps = 10/108 (9%)
Query: 396 KNMRRMRNGPGRNQCLGGRAEN------SKGFSPNSFDRVLLDAPCSALGL---RPRLFA 446
K + + R Q L R + S F P +FDR+L+DAPCS G+ +P +
Sbjct: 286 KKTKLIDQAAKRLQLLNIRTAHLDARTASTMFEPETFDRILVDAPCSGFGVLRRKPDIKY 345
Query: 447 AEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEALC 494
A+ T + + + Q + D QLV+ GI+VYSTCTI+ ENE +
Sbjct: 346 AK-TEKDIHKLAEIQLAILDDVSQLVKENGILVYSTCTIDKEENETVL 392
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 45/82 (54%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G+ +Q+ S++ A+AL + +LD CAAPGGKTT IA + G V A+D K
Sbjct: 229 DGKCSIQDESSMLAAYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKT 288
Query: 300 MDIQKLAAEMGLKCITTYKLDA 321
I + A + L I T LDA
Sbjct: 289 KLIDQAAKRLQLLNIRTAHLDA 310
>gi|315282824|ref|ZP_07871146.1| ribosomal RNA small subunit methyltransferase B [Listeria marthii
FSL S4-120]
gi|313613532|gb|EFR87354.1| ribosomal RNA small subunit methyltransferase B [Listeria marthii
FSL S4-120]
Length = 400
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 56/108 (51%), Gaps = 10/108 (9%)
Query: 396 KNMRRMRNGPGRNQCLGGRAEN------SKGFSPNSFDRVLLDAPCSALGL---RPRLFA 446
K + + R Q L R + S F P +FDR+L+DAPCS G+ +P +
Sbjct: 242 KKTKLIDQAAKRLQLLNIRTAHLDARTASTMFEPETFDRILVDAPCSGFGVLRRKPDIKY 301
Query: 447 AEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEALC 494
A+ T + + + Q + D QLV+ GI+VYSTCTI+ ENE +
Sbjct: 302 AK-TEKDIHKLAEIQLAILDDVSQLVKENGILVYSTCTIDKEENETVL 348
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 45/82 (54%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G+ +Q+ S++ A+AL + +LD CAAPGGKTT IA + G V A+D K
Sbjct: 185 DGKCSIQDESSMLAAYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKT 244
Query: 300 MDIQKLAAEMGLKCITTYKLDA 321
I + A + L I T LDA
Sbjct: 245 KLIDQAAKRLQLLNIRTAHLDA 266
>gi|290893049|ref|ZP_06556038.1| sun protein [Listeria monocytogenes FSL J2-071]
gi|404408266|ref|YP_006690981.1| tRNA and rRNA cytosine-C5-methylase [Listeria monocytogenes
SLCC2376]
gi|422410069|ref|ZP_16487030.1| ribosomal RNA small subunit methyltransferase B [Listeria
monocytogenes FSL F2-208]
gi|290557409|gb|EFD90934.1| sun protein [Listeria monocytogenes FSL J2-071]
gi|313608142|gb|EFR84195.1| ribosomal RNA small subunit methyltransferase B [Listeria
monocytogenes FSL F2-208]
gi|404242415|emb|CBY63815.1| putative tRNA and rRNA cytosine-C5-methylase [Listeria
monocytogenes SLCC2376]
Length = 444
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 56/108 (51%), Gaps = 10/108 (9%)
Query: 396 KNMRRMRNGPGRNQCLGGRAEN------SKGFSPNSFDRVLLDAPCSALGL---RPRLFA 446
K + + R Q L R + S F P +FDR+L+DAPCS G+ +P +
Sbjct: 286 KKTKLIDQAAKRLQLLNIRTAHLDARTASTMFEPETFDRILVDAPCSGFGVLRRKPDIKY 345
Query: 447 AEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEALC 494
A+ T + + + Q + D QLV+ GI+VYSTCTI+ ENE +
Sbjct: 346 AK-TEKDIHKLAEIQLAILDDVSQLVKENGILVYSTCTIDKEENETVL 392
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 45/82 (54%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G+ +Q+ S++ A+AL + +LD CAAPGGKTT IA + G V A+D K
Sbjct: 229 DGKCSIQDESSMLAAYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKT 288
Query: 300 MDIQKLAAEMGLKCITTYKLDA 321
I + A + L I T LDA
Sbjct: 289 KLIDQAAKRLQLLNIRTAHLDA 310
>gi|386714212|ref|YP_006180535.1| Sun protein [Halobacillus halophilus DSM 2266]
gi|384073768|emb|CCG45261.1| Sun protein [Halobacillus halophilus DSM 2266]
Length = 450
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 50/82 (60%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
EG++ +Q+ S++ A +D +KG ILD C+APGGKTT IA + DEGE+VA D K
Sbjct: 230 EGKVTIQDQSSMLVAEMMDLEKGMTILDACSAPGGKTTHIAEKMEDEGEIVAYDLHVKKA 289
Query: 300 MDIQKLAAEMGLKCITTYKLDA 321
+ K A ++ L I + D+
Sbjct: 290 KLVNKKAEQLQLTSIQASQADS 311
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 8/72 (11%)
Query: 425 SFDRVLLDAPCSALGL---RP--RLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIV 479
SFDR+LLDAPCS LG+ +P + E + SLR K Q + D+ L++ GG +V
Sbjct: 322 SFDRILLDAPCSGLGVLRGKPDIKYHKQLEDVFSLR---KIQDELLDRVAPLLKEGGKLV 378
Query: 480 YSTCTINPGENE 491
YSTCT++ ENE
Sbjct: 379 YSTCTVDRHENE 390
>gi|422809903|ref|ZP_16858314.1| Ribosomal RNA small subunit methyltransferase B [Listeria
monocytogenes FSL J1-208]
gi|378751567|gb|EHY62155.1| Ribosomal RNA small subunit methyltransferase B [Listeria
monocytogenes FSL J1-208]
Length = 444
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 56/108 (51%), Gaps = 10/108 (9%)
Query: 396 KNMRRMRNGPGRNQCLGGRAEN------SKGFSPNSFDRVLLDAPCSALGL---RPRLFA 446
K + + R Q L R + S F P +FDR+L+DAPCS G+ +P +
Sbjct: 286 KKTKLIDQAAKRLQLLNIRTAHLDARTASTMFEPETFDRILVDAPCSGFGVLRRKPDIKY 345
Query: 447 AEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEALC 494
A+ T + + + Q + D QLV+ GI+VYSTCTI+ ENE +
Sbjct: 346 AK-TEKDIHKLAEIQLAILDDVSQLVKENGILVYSTCTIDKEENETVL 392
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 45/82 (54%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G+ +Q+ S++ A+AL + +LD CAAPGGKTT IA + G V A+D K
Sbjct: 229 DGKCSIQDESSMLAAYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKT 288
Query: 300 MDIQKLAAEMGLKCITTYKLDA 321
I + A + L I T LDA
Sbjct: 289 KLIDQAAKRLQLLNIRTAHLDA 310
>gi|389583837|dbj|GAB66571.1| proliferating-cell nucleolar antigen p120, partial [Plasmodium
cynomolgi strain B]
Length = 329
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 47/67 (70%), Gaps = 1/67 (1%)
Query: 426 FDRVLLDAPCSALGLRPRLFAAE-ETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCT 484
FD+++LDAPCS G+ + A +TI+ +R+ + QR++ + A+ LV+ GGI+VYSTC+
Sbjct: 199 FDKIILDAPCSGTGVVNKNKGARRKTIKEIRDLAQKQRKLLNNAISLVKNGGIVVYSTCS 258
Query: 485 INPGENE 491
I ENE
Sbjct: 259 ITVEENE 265
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 54/101 (53%)
Query: 234 SFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVD 293
S + + G +Q+ S++ L+ Q E ILDMCAAPGGK T I +L +++G V A D
Sbjct: 101 SLNEYMYGYYMIQSASSLIPVLELNVQPNEIILDMCAAPGGKCTFICALQKNKGFVYAND 160
Query: 294 RSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDE 334
+ + I+ A+ MG+ + DALK + N D+
Sbjct: 161 VNKMRCKAIEANASRMGIHNLIVTSFDALKIGEKWNFQFDK 201
>gi|317500362|ref|ZP_07958586.1| NOL1/NOP2/sun family protein [Lachnospiraceae bacterium 8_1_57FAA]
gi|336438948|ref|ZP_08618569.1| hypothetical protein HMPREF0990_00963 [Lachnospiraceae bacterium
1_1_57FAA]
gi|316898117|gb|EFV20164.1| NOL1/NOP2/sun family protein [Lachnospiraceae bacterium 8_1_57FAA]
gi|336017438|gb|EGN47200.1| hypothetical protein HMPREF0990_00963 [Lachnospiraceae bacterium
1_1_57FAA]
Length = 468
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 48/76 (63%), Gaps = 8/76 (10%)
Query: 421 FSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHG-----KYQRRMFDQAVQLVRPG 475
+ P FD++L+DAPCS G+ + + +++ HG K QR + QA Q+++PG
Sbjct: 168 YFPEYFDKILIDAPCSGEGMFRK---DRKMVKAWEEHGPEFFVKIQRSIITQAAQMLKPG 224
Query: 476 GIIVYSTCTINPGENE 491
G+++YSTCT +P ENE
Sbjct: 225 GMLLYSTCTFSPEENE 240
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 39/64 (60%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G +LQ ++ A+ L + G+R+LD+CAAPGGK T + + L G ++A D S+++
Sbjct: 82 GLYYLQEPSAMTPANRLPIEAGDRVLDVCAAPGGKATELGAKLNGSGVLIANDLSNSRAR 141
Query: 301 DIQK 304
+ K
Sbjct: 142 GLLK 145
>gi|229180141|ref|ZP_04307485.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
172560W]
gi|228603350|gb|EEK60827.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
172560W]
Length = 429
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 60/96 (62%), Gaps = 1/96 (1%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G + +Q+ S++ A AL+P G+ +LD CAAPGGKT IA L+ G+V+++D +KV
Sbjct: 212 KGFLSIQDESSMLVARALEPNTGDAVLDSCAAPGGKTAHIAERLKGTGKVMSLDLHAHKV 271
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRR-KNESNDE 334
I++ A +GL+ + T LDA K NE+ D+
Sbjct: 272 RLIKQQAERLGLENVETKALDARKVQEHFANETFDK 307
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F+ +FD++L+DAPCS G+ +P + ++ S R Q + ++ L++ GG
Sbjct: 300 FANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSER-LSTIQIAILEKIAPLLKQGGR 358
Query: 478 IVYSTCTINPGENE 491
+VYSTCTI ENE
Sbjct: 359 LVYSTCTIEKIENE 372
>gi|217964025|ref|YP_002349703.1| ribosomal RNA small subunit methyltransferase B [Listeria
monocytogenes HCC23]
gi|386008594|ref|YP_005926872.1| tRNA and rRNA cytosine-C5-methylase [Listeria monocytogenes L99]
gi|386027202|ref|YP_005947978.1| putative rRNA cytosine-C5-methylase (Sun protein) [Listeria
monocytogenes M7]
gi|217333295|gb|ACK39089.1| ribosomal RNA small subunit methyltransferase B [Listeria
monocytogenes HCC23]
gi|307571404|emb|CAR84583.1| tRNA and rRNA cytosine-C5-methylase, putative [Listeria
monocytogenes L99]
gi|336023783|gb|AEH92920.1| putative rRNA cytosine-C5-methylase (Sun protein) [Listeria
monocytogenes M7]
Length = 444
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 56/108 (51%), Gaps = 10/108 (9%)
Query: 396 KNMRRMRNGPGRNQCLGGRAEN------SKGFSPNSFDRVLLDAPCSALGL---RPRLFA 446
K + + R Q L R + S F P +FDR+L+DAPCS G+ +P +
Sbjct: 286 KKTKLIDQAAKRLQLLNIRTAHLDARTASTMFEPETFDRILVDAPCSGFGVLRRKPDIKY 345
Query: 447 AEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEALC 494
A+ T + + + Q + D QLV+ GI+VYSTCTI+ ENE +
Sbjct: 346 AK-TEKDIHKLAEIQLAILDDVSQLVKENGILVYSTCTIDKEENETVL 392
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 45/82 (54%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G+ +Q+ S++ A+AL + +LD CAAPGGKTT IA + G V A+D K
Sbjct: 229 DGKCSIQDESSMLAAYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKT 288
Query: 300 MDIQKLAAEMGLKCITTYKLDA 321
I + A + L I T LDA
Sbjct: 289 KLIDQAAKRLQLLNIRTAHLDA 310
>gi|16803862|ref|NP_465347.1| hypothetical protein lmo1822 [Listeria monocytogenes EGD-e]
gi|254829183|ref|ZP_05233870.1| sun protein [Listeria monocytogenes FSL N3-165]
gi|386044131|ref|YP_005962936.1| ribosomal RNA small subunit methyltransferase B [Listeria
monocytogenes 10403S]
gi|386050799|ref|YP_005968790.1| sun protein [Listeria monocytogenes FSL R2-561]
gi|404284318|ref|YP_006685215.1| tRNA and rRNA cytosine-C5-methylase [Listeria monocytogenes
SLCC2372]
gi|404411123|ref|YP_006696711.1| tRNA and rRNA cytosine-C5-methylase [Listeria monocytogenes
SLCC5850]
gi|405758873|ref|YP_006688149.1| tRNA and rRNA cytosine-C5-methylase [Listeria monocytogenes
SLCC2479]
gi|16411276|emb|CAC99900.1| lmo1822 [Listeria monocytogenes EGD-e]
gi|258601593|gb|EEW14918.1| sun protein [Listeria monocytogenes FSL N3-165]
gi|345537365|gb|AEO06805.1| ribosomal RNA small subunit methyltransferase B [Listeria
monocytogenes 10403S]
gi|346424645|gb|AEO26170.1| sun protein [Listeria monocytogenes FSL R2-561]
gi|404230949|emb|CBY52353.1| putative tRNA and rRNA cytosine-C5-methylase [Listeria
monocytogenes SLCC5850]
gi|404233820|emb|CBY55223.1| putative tRNA and rRNA cytosine-C5-methylase [Listeria
monocytogenes SLCC2372]
gi|404236755|emb|CBY58157.1| putative tRNA and rRNA cytosine-C5-methylase [Listeria
monocytogenes SLCC2479]
Length = 444
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 56/108 (51%), Gaps = 10/108 (9%)
Query: 396 KNMRRMRNGPGRNQCLGGRAEN------SKGFSPNSFDRVLLDAPCSALGL---RPRLFA 446
K + + R Q L R + S F P +FDR+L+DAPCS G+ +P +
Sbjct: 286 KKTKLIDEAAKRLQLLNIRTAHLDARTASTMFEPETFDRILVDAPCSGFGVLRRKPDIKY 345
Query: 447 AEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEALC 494
A+ T + + + Q + D QLV+ GI+VYSTCTI+ ENE +
Sbjct: 346 AK-TEKDIHKLAEIQLAILDDVSQLVKENGILVYSTCTIDKEENETVL 392
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 45/82 (54%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G+ +Q+ S++ A+AL + +LD CAAPGGKTT IA + G V A+D K
Sbjct: 229 DGKCSIQDESSMLAAYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKT 288
Query: 300 MDIQKLAAEMGLKCITTYKLDA 321
I + A + L I T LDA
Sbjct: 289 KLIDEAAKRLQLLNIRTAHLDA 310
>gi|45358689|ref|NP_988246.1| proliferating-cell nucleolar antigen [Methanococcus maripaludis S2]
gi|45047555|emb|CAF30682.1| putative proliferating-cell nucleolar antigen [Methanococcus
maripaludis S2]
Length = 292
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 101/210 (48%), Gaps = 18/210 (8%)
Query: 230 FQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEV 289
F + S + L G FLQ++ SI+ + L+P K + +LDMCAAPGGKTT +A L+ +EG +
Sbjct: 73 FSMGSTPEYLLGYYFLQSISSIIPSITLNPSKDDEVLDMCAAPGGKTTHLAQLMENEGSI 132
Query: 290 VAVDRSHNKVMDIQKLAAEMGLK---CITTYKLDALKAVRRKNESNDEPNMCNS-KDNNY 345
+AV+ + N++ ++ MG K I T ++ K +R D P N KD+N
Sbjct: 133 LAVEINKNRLKSLRSNINRMGFKNTLMINTNAVNIDKKLRFDKILLDAPCTGNEVKDSNR 192
Query: 346 ITSQTSDSM--KLHKEVPSIAAEGLNGD-----KSCKEKVSNEKGVERTYVSKADTRKNM 398
+ ++ K E+ A E L +C ++ ++ + R Y+ K T KNM
Sbjct: 193 VKTKRDILFCAKRQVELFRTAIEVLKDGGELVYSTCSPEIEEDEDIVR-YILK--TNKNM 249
Query: 399 RRMR----NGPGRNQCLGGRAENSKGFSPN 424
+ + PG N G K PN
Sbjct: 250 ELIELTVDDFPGINMIEGEVKGTLKVIPPN 279
Score = 42.0 bits (97), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 426 FDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTI 485
FD++LLDAPC+ ++ +T + + K Q +F A+++++ GG +VYSTC+
Sbjct: 173 FDKILLDAPCTGNEVKDS--NRVKTKRDILFCAKRQVELFRTAIEVLKDGGELVYSTCSP 230
Query: 486 NPGENEALC 494
E+E +
Sbjct: 231 EIEEDEDIV 239
>gi|384252464|gb|EIE25940.1| S-adenosyl-L-methionine-dependent methyltransferase [Coccomyxa
subellipsoidea C-169]
Length = 452
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 60/114 (52%), Gaps = 26/114 (22%)
Query: 397 NMRRMRNGPG---RNQCLGG---------RAENSKGFSPNSFDRVLLDAPCSALG----- 439
N RR+R PG R G R ++ + P FDRVLLDAPCS LG
Sbjct: 291 NARRLRGLPGTAARQGLPAGFLTVGSADLREQSGQRHVP--FDRVLLDAPCSGLGVLAKR 348
Query: 440 --LRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENE 491
LR R A+ IQS + Q + D A QLVRPGG++VYSTC+I P EN+
Sbjct: 349 ADLRWRRQPAD--IQS---NALLQDELLDAAAQLVRPGGLLVYSTCSIEPEEND 397
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 34/55 (61%)
Query: 257 LDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL 311
LDPQ GE +LD CAAPGGK A+ + +G++VA D + ++ + AA GL
Sbjct: 253 LDPQPGEHVLDACAAPGGKALFAAARMLGKGQLVANDANARRLRGLPGTAARQGL 307
>gi|124025193|ref|YP_001014309.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. NATL1A]
gi|123960261|gb|ABM75044.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. NATL1A]
Length = 448
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 54/89 (60%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
EG+ +Q+ S + A +L P GE+ILD CAAPGGK+T IA L+ +EG + +VDRS +
Sbjct: 243 EGKWSVQDRSSQLIAPSLGPLPGEKILDACAAPGGKSTHIAELINNEGNLWSVDRSSRRS 302
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRRK 328
I + +G KC+ D+ + + +K
Sbjct: 303 KKILANSERLGTKCLQILVADSNELLLKK 331
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 44/77 (57%), Gaps = 12/77 (15%)
Query: 419 KGFSPNSFDRVLLDAPCSALGLRPRLFAA-----EETIQSLRNHGKYQRRMFDQAVQLVR 473
KGF FDR+L+DAPCS LG R A ++ IQ L Q ++ + L++
Sbjct: 335 KGF----FDRILIDAPCSGLGTLARHPDARWRMNQDNIQQLV---AVQSQLLNSLAPLLK 387
Query: 474 PGGIIVYSTCTINPGEN 490
GG +VYSTCTI+P EN
Sbjct: 388 NGGKLVYSTCTIHPEEN 404
>gi|422416342|ref|ZP_16493299.1| ribosomal RNA small subunit methyltransferase B [Listeria innocua
FSL J1-023]
gi|313623277|gb|EFR93521.1| ribosomal RNA small subunit methyltransferase B [Listeria innocua
FSL J1-023]
Length = 446
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 56/108 (51%), Gaps = 10/108 (9%)
Query: 396 KNMRRMRNGPGRNQCLGGRAEN------SKGFSPNSFDRVLLDAPCSALGL---RPRLFA 446
K + + R Q L R + S F P +FDR+L+DAPCS G+ +P +
Sbjct: 286 KKTKLIDQAAKRLQLLNIRTAHLDARTASTMFEPETFDRILVDAPCSGFGVLRRKPDIKY 345
Query: 447 AEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEALC 494
A+ T + + + Q + D QLV+ GI+VYSTCTI+ ENE +
Sbjct: 346 AK-TEKDIHKLAEIQLAILDDVSQLVKENGILVYSTCTIDKEENETVL 392
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 45/82 (54%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G+ +Q+ S++ A+AL + +LD CAAPGGKTT IA + G V A+D K
Sbjct: 229 DGKCSIQDESSMLVAYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKT 288
Query: 300 MDIQKLAAEMGLKCITTYKLDA 321
I + A + L I T LDA
Sbjct: 289 KLIDQAAKRLQLLNIRTAHLDA 310
>gi|357636275|ref|ZP_09134150.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
macacae NCTC 11558]
gi|357584729|gb|EHJ51932.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
macacae NCTC 11558]
Length = 438
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 407 RNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGLRPRL--FAAEETIQSLRNHGKYQRRM 464
+ + L R + K F P++FD++L+DAPCS LGL R ++ Q + K Q +
Sbjct: 301 KTEKLDARKVHEK-FQPDTFDKILVDAPCSGLGLMRRKPDIKYNKSNQDFHSLQKLQLEI 359
Query: 465 FDQAVQLVRPGGIIVYSTCTINPGENE 491
D Q ++ GGII YSTCTI EN+
Sbjct: 360 LDSVCQTIKKGGIIAYSTCTIFTDENQ 386
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 52/86 (60%), Gaps = 2/86 (2%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G I +Q+ S + A L Q E+ILD C+APGGK+ +AS L G+++A+D +K+
Sbjct: 226 KGAITIQDESSQLVAPTLSIQGDEKILDACSAPGGKSAHMASYLT-TGQIIALDLYDHKL 284
Query: 300 MDIQKLAAEMGLK-CITTYKLDALKA 324
I++ A +GL I T KLDA K
Sbjct: 285 KLIEENAHRLGLSDKIKTEKLDARKV 310
>gi|189241014|ref|XP_968918.2| PREDICTED: similar to williams-beuren syndrome critical region
protein [Tribolium castaneum]
Length = 840
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 75/173 (43%), Gaps = 25/173 (14%)
Query: 166 VEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRA-----SEG 220
VE+P L IT ++G F G + + T + G A S
Sbjct: 214 VEKPRYVRVNTLKITVNEAIEG-------FREEGWVLKRYTDSENYLGFLEAVSNLGSNE 266
Query: 221 IAVDMH----------NRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCA 270
VD+H +Q ++ + G I LQ+ S + H LDPQ G ILDMCA
Sbjct: 267 FMVDLHIPYLLIFPPKTEFYQHAAYKN---GSIILQDKASCLPVHILDPQPGTSILDMCA 323
Query: 271 APGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323
APG KTT A+L+ + G++ AV+ + ++K+ G C+ D L+
Sbjct: 324 APGMKTTQCAALIDNIGKIYAVEIGTKRFHTLEKIVESSGASCVEPINSDVLQ 376
>gi|284802268|ref|YP_003414133.1| hypothetical protein LM5578_2024 [Listeria monocytogenes 08-5578]
gi|284995410|ref|YP_003417178.1| hypothetical protein LM5923_1975 [Listeria monocytogenes 08-5923]
gi|386054077|ref|YP_005971635.1| ribosomal RNA small subunit methyltransferase B [Listeria
monocytogenes Finland 1998]
gi|404413901|ref|YP_006699488.1| tRNA and rRNA cytosine-C5-methylase [Listeria monocytogenes
SLCC7179]
gi|284057830|gb|ADB68771.1| hypothetical protein LM5578_2024 [Listeria monocytogenes 08-5578]
gi|284060877|gb|ADB71816.1| hypothetical protein LM5923_1975 [Listeria monocytogenes 08-5923]
gi|346646728|gb|AEO39353.1| ribosomal RNA small subunit methyltransferase B [Listeria
monocytogenes Finland 1998]
gi|404239600|emb|CBY61001.1| putative tRNA and rRNA cytosine-C5-methylase [Listeria
monocytogenes SLCC7179]
Length = 444
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 56/108 (51%), Gaps = 10/108 (9%)
Query: 396 KNMRRMRNGPGRNQCLGGRAEN------SKGFSPNSFDRVLLDAPCSALGL---RPRLFA 446
K + + R Q L R + S F P +FDR+L+DAPCS G+ +P +
Sbjct: 286 KKTKLIDEAAKRLQLLNIRTAHLDARTASTMFEPETFDRILVDAPCSGFGVLRRKPDIKY 345
Query: 447 AEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEALC 494
A+ T + + + Q + D QLV+ GI+VYSTCTI+ ENE +
Sbjct: 346 AK-TEKDIHKLAEIQLAILDDVSQLVKENGILVYSTCTIDKEENETVL 392
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 45/82 (54%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G+ +Q+ S++ A+AL + +LD CAAPGGKTT IA + G V A+D K
Sbjct: 229 DGKCSIQDESSMLAAYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKT 288
Query: 300 MDIQKLAAEMGLKCITTYKLDA 321
I + A + L I T LDA
Sbjct: 289 KLIDEAAKRLQLLNIRTAHLDA 310
>gi|83815307|ref|YP_445018.1| ribosomal RNA small subunit methyltransferase B [Salinibacter ruber
DSM 13855]
gi|83756701|gb|ABC44814.1| ribosomal RNA small subunit methyltransferase B [Salinibacter ruber
DSM 13855]
Length = 427
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 422 SPNSFDRVLLDAPCSALGLRPRL--FAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIV 479
P DRVLLD PC+ +G+ + +++ L + Q + D A QLVRPGG++V
Sbjct: 301 EPPQGDRVLLDVPCTGMGVLAKRAGLRWRRSMEDLEEMAELQDELLDAAAQLVRPGGLLV 360
Query: 480 YSTCTINPGENE 491
YSTCT P ENE
Sbjct: 361 YSTCTTEPEENE 372
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 55/105 (52%), Gaps = 3/105 (2%)
Query: 223 VDMHNRIFQLPSFY--DVLE-GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAI 279
+D + R+ +L + D+L+ G + +Q+ + + LDPQ GE ++D CAAPGGK
Sbjct: 191 LDRYLRLKRLQALIAGDLLDDGHVAVQDESAGLVVQLLDPQPGETLIDGCAAPGGKAMHA 250
Query: 280 ASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324
A+ + G + AVDR ++ ++ A G + + L+A
Sbjct: 251 AARMEGTGTIYAVDRDEQRLERVETAAEAQGASEMVEAETADLRA 295
>gi|347756200|ref|YP_004863763.1| ribosomal RNA small subunit methyltransferase RsmB [Candidatus
Chloracidobacterium thermophilum B]
gi|347588717|gb|AEP13246.1| ribosomal RNA small subunit methyltransferase RsmB [Candidatus
Chloracidobacterium thermophilum B]
Length = 519
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 53/81 (65%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G+I++Q+ S A L Q G+R+LDMCAAPGGKT +A+L+++EG + A+D ++V
Sbjct: 291 GKIYVQDAGSQQVARWLGVQPGQRVLDMCAAPGGKTAQLAALMQNEGTITALDVHPHRVA 350
Query: 301 DIQKLAAEMGLKCITTYKLDA 321
+++ A +G++ Y DA
Sbjct: 351 AMEQNLARLGVRIARCYVADA 371
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRL--FAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
P+SFD VLLDAPCS G R T + L Q R+ A Q V+PGG ++Y
Sbjct: 395 PDSFDAVLLDAPCSGTGTLRRHPEIKWRLTPRKLSELAGIQTRLLWNAAQAVKPGGFLLY 454
Query: 481 STCTINPGENE 491
+ C++ E E
Sbjct: 455 AVCSLEAREGE 465
>gi|347549218|ref|YP_004855546.1| putative RNA-binding Sun protein [Listeria ivanovii subsp. ivanovii
PAM 55]
gi|346982289|emb|CBW86283.1| Putative RNA-binding Sun protein [Listeria ivanovii subsp. ivanovii
PAM 55]
Length = 446
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 56/108 (51%), Gaps = 10/108 (9%)
Query: 396 KNMRRMRNGPGRNQCLGGRAEN------SKGFSPNSFDRVLLDAPCSALGL---RPRLFA 446
K + + R Q L R + S F P +FDR+L+DAPCS G+ +P +
Sbjct: 286 KKTKLIDQAAKRLQLLNIRTAHLDARTASTMFEPETFDRILVDAPCSGFGVLRRKPDIKY 345
Query: 447 AEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEALC 494
A+ T + + + Q + D QLV+ GI+VYSTCTI+ ENE +
Sbjct: 346 AK-TEKDIHKLAEIQLAILDDVSQLVKENGILVYSTCTIDKEENETVL 392
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 45/82 (54%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G+ +Q+ S++ A+AL + +LD CAAPGGKTT IA + G V A+D K
Sbjct: 229 DGKCSIQDESSMLAAYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKT 288
Query: 300 MDIQKLAAEMGLKCITTYKLDA 321
I + A + L I T LDA
Sbjct: 289 KLIDQAAKRLQLLNIRTAHLDA 310
>gi|166367976|ref|YP_001660249.1| rRNA SAM-dependent methyltransferase [Microcystis aeruginosa
NIES-843]
gi|166090349|dbj|BAG05057.1| rRNA SAM-dependent methyltransferase [Microcystis aeruginosa
NIES-843]
Length = 450
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 59/118 (50%), Gaps = 10/118 (8%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G LQ++ + + + LDPQ GE I+D CAAPGGKTT IA L+ D G ++A D++ +++
Sbjct: 234 GNYTLQDISAQLVTYLLDPQPGETIIDACAAPGGKTTHIAELMGDRGRILACDQTASRLR 293
Query: 301 DIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHK 358
++ + LK I + D S D P D I + S LHK
Sbjct: 294 QLEANIKRLDLKAIEIHLGD----------SRDRPQWHGIADRVLIDAPCSGLGTLHK 341
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 427 DRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTC 483
DRVL+DAPCS LG RP + +T ++L K Q + A V+P GI+VY+TC
Sbjct: 325 DRVLIDAPCSGLGTLHKRPDI-RWRQTPENLPVLAKRQGELLASAATWVKPKGILVYATC 383
Query: 484 TINPGENE 491
T++P ENE
Sbjct: 384 TLDPLENE 391
>gi|392960506|ref|ZP_10325974.1| sun protein [Pelosinus fermentans DSM 17108]
gi|421054737|ref|ZP_15517702.1| sun protein [Pelosinus fermentans B4]
gi|421060987|ref|ZP_15523382.1| sun protein [Pelosinus fermentans B3]
gi|421063840|ref|ZP_15525780.1| sun protein [Pelosinus fermentans A12]
gi|421071600|ref|ZP_15532716.1| sun protein [Pelosinus fermentans A11]
gi|392440418|gb|EIW18098.1| sun protein [Pelosinus fermentans B4]
gi|392446865|gb|EIW24136.1| sun protein [Pelosinus fermentans A11]
gi|392452585|gb|EIW29509.1| sun protein [Pelosinus fermentans B3]
gi|392455083|gb|EIW31890.1| sun protein [Pelosinus fermentans DSM 17108]
gi|392462206|gb|EIW38313.1| sun protein [Pelosinus fermentans A12]
Length = 443
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 58/103 (56%), Gaps = 3/103 (2%)
Query: 219 EGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTA 278
EGI + + L S D G +Q+ S++ AH L P+ GE I+D C APGGK+T
Sbjct: 213 EGIVCHSYPALSTLKSLRD---GLFQIQDESSMLVAHVLAPKPGEFIIDACGAPGGKSTH 269
Query: 279 IASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
IA+L+ ++G V++ D +K+ Q+ A +GL I LDA
Sbjct: 270 IATLMGNKGRVLSTDIYDHKLALTQENAQRLGLTIIDVQSLDA 312
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 427 DRVLLDAPCSALGLRPRLFAAE--ETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCT 484
D+VL+DAPCS LG+ R + +T + Q + A Q V+ GG +VYSTCT
Sbjct: 324 DKVLVDAPCSGLGVLRRKADSRWRKTEDMFKELPILQMAILKSAAQCVKLGGTLVYSTCT 383
Query: 485 INPGENE 491
P EN+
Sbjct: 384 TEPEENQ 390
>gi|297680257|ref|XP_002817918.1| PREDICTED: putative methyltransferase NSUN5, partial [Pongo abelii]
Length = 377
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 71/139 (51%), Gaps = 14/139 (10%)
Query: 194 YFERSGL-YIGQGTAMMSRAGIFRASEG---IAVDMHNRIFQLPSFYDVLE------GEI 243
YF+R G Y G+ +++ FRA +G + + + P+ D+ E G +
Sbjct: 153 YFKRQGFSYQGRASSLDD----FRALKGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHL 208
Query: 244 FLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQ 303
LQ+ S + A LDP G ++D CAAPG KT+ +A+LL+++G++ A D ++ +
Sbjct: 209 ILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMA 268
Query: 304 KLAAEMGLKCITTYKLDAL 322
L A G+ C + D L
Sbjct: 269 TLLARAGVSCCELAEEDFL 287
>gi|425440910|ref|ZP_18821202.1| Ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa PCC 9717]
gi|389718555|emb|CCH97514.1| Ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa PCC 9717]
Length = 450
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 59/118 (50%), Gaps = 10/118 (8%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G LQ++ + + + LDPQ GE I+D CAAPGGKTT IA L+ D G ++A D++ +++
Sbjct: 234 GNYTLQDISAQLVTYLLDPQPGETIIDACAAPGGKTTHIAELMGDRGRILACDQTASRLR 293
Query: 301 DIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHK 358
++ + LK I + D S D P D I + S LHK
Sbjct: 294 QLEANIKRLDLKAIEIHLGD----------SRDRPQWHGIADRVLIDAPCSGLGTLHK 341
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 427 DRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTC 483
DRVL+DAPCS LG RP + +T ++L K Q + A V+P GI+VY+TC
Sbjct: 325 DRVLIDAPCSGLGTLHKRPDI-RWRQTPENLPVLAKRQGELLASAATWVKPKGILVYATC 383
Query: 484 TINPGENE 491
T++P ENE
Sbjct: 384 TLDPLENE 391
>gi|428303896|ref|YP_007140721.1| sun protein [Crinalium epipsammum PCC 9333]
gi|428245431|gb|AFZ11211.1| sun protein [Crinalium epipsammum PCC 9333]
Length = 480
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 54/86 (62%), Gaps = 3/86 (3%)
Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
I +LP F EG +Q+ + + ++ LDPQ GE ++D CAAPGGKTT IA L+ D G+
Sbjct: 251 IQELPGFT---EGWWTIQDSSAQLVSYLLDPQPGEVVIDACAAPGGKTTHIAELMGDVGK 307
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKCI 314
V DR+ +++ +++ A + LK I
Sbjct: 308 VWGCDRTPSRLKKLKENAQRLNLKSI 333
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 424 NSFDRVLLDAPCSALGLRPRLFAAE--ETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYS 481
N DR LLDAPCS LG R A +T +++R Q ++ D A V+PGGI+VY+
Sbjct: 348 NKCDRALLDAPCSGLGTLNRRADARWRQTPETVRELSTLQAQLLDHAATWVKPGGILVYA 407
Query: 482 TCTINPGENE 491
TCT++ ENE
Sbjct: 408 TCTVHSPENE 417
>gi|16801002|ref|NP_471270.1| hypothetical protein lin1936 [Listeria innocua Clip11262]
gi|423098731|ref|ZP_17086439.1| ribosomal RNA small subunit methyltransferase B [Listeria innocua
ATCC 33091]
gi|16414437|emb|CAC97166.1| lin1936 [Listeria innocua Clip11262]
gi|370794558|gb|EHN62321.1| ribosomal RNA small subunit methyltransferase B [Listeria innocua
ATCC 33091]
Length = 446
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 56/108 (51%), Gaps = 10/108 (9%)
Query: 396 KNMRRMRNGPGRNQCLGGRAEN------SKGFSPNSFDRVLLDAPCSALGL---RPRLFA 446
K + + R Q L R + S F P +FDR+L+DAPCS G+ +P +
Sbjct: 286 KKTKLIDQAAKRLQLLNIRTAHLDARTASTMFEPETFDRILVDAPCSGFGVLRRKPDIKY 345
Query: 447 AEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEALC 494
A+ T + + + Q + D QLV+ GI+VYSTCTI+ ENE +
Sbjct: 346 AK-TEKDIHKLAEIQLAILDDVSQLVKENGILVYSTCTIDKEENETVL 392
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 45/82 (54%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G+ +Q+ S++ A+AL + +LD CAAPGGKTT IA + G V A+D K
Sbjct: 229 DGKCSIQDESSMLVAYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKT 288
Query: 300 MDIQKLAAEMGLKCITTYKLDA 321
I + A + L I T LDA
Sbjct: 289 KLIDQAAKRLQLLNIRTAHLDA 310
>gi|218439986|ref|YP_002378315.1| sun protein [Cyanothece sp. PCC 7424]
gi|218172714|gb|ACK71447.1| sun protein [Cyanothece sp. PCC 7424]
Length = 452
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 50/86 (58%), Gaps = 3/86 (3%)
Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
I QLP F EG +Q+ + + H LDPQ E I+D CAAPGGKTT IA L+ D G
Sbjct: 230 IQQLPGFE---EGWWTVQDSSAQLVTHLLDPQPDEIIIDACAAPGGKTTHIAQLMGDRGT 286
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKCI 314
+ A DR +++ +Q+ A + L I
Sbjct: 287 IWACDRVPSRLRKVQQNAERLQLNSI 312
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 4/72 (5%)
Query: 427 DRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTC 483
DRVLLDAPCS LG RP + +T + + + Q + ++ V+P GI+VY+TC
Sbjct: 330 DRVLLDAPCSGLGTLHKRPDI-RWRQTPEKIAELSQLQTELLEETATWVKPKGILVYATC 388
Query: 484 TINPGENEALCA 495
T+NP ENE + A
Sbjct: 389 TLNPLENERVIA 400
>gi|315917987|ref|ZP_07914227.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium gonidiaformans
ATCC 25563]
gi|313691862|gb|EFS28697.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium gonidiaformans
ATCC 25563]
Length = 440
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 54/82 (65%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
EG+I +Q+ S + A L + GE +LD C+APGGKT+ +A +++EG+++++D +K+
Sbjct: 219 EGKIIVQDAASYLAAKNLGAKPGEIVLDTCSAPGGKTSVLAEAMKNEGQILSLDIHTHKI 278
Query: 300 MDIQKLAAEMGLKCITTYKLDA 321
IQ+ ++G+ + KLDA
Sbjct: 279 KLIQENCKKLGITIVQAVKLDA 300
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 8/71 (11%)
Query: 426 FDRVLLDAPCSALGLRPR----LF-AAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
FDR+L+DAPCS G+ + L+ EE I+ L QR + A ++++ GG +VY
Sbjct: 310 FDRILVDAPCSGYGVLAKKPEGLYNKKEENIKELVT---LQREILMAAAEVLKVGGEMVY 366
Query: 481 STCTINPGENE 491
STCTI P EN+
Sbjct: 367 STCTILPAENQ 377
>gi|258512029|ref|YP_003185463.1| Fmu (Sun) domain-containing protein [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
gi|257478755|gb|ACV59074.1| Fmu (Sun) domain protein [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
Length = 479
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 51/85 (60%), Gaps = 4/85 (4%)
Query: 236 YDVLE--GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEG--EVVA 291
Y VL G +LQ+ ++ A ALDPQ GERILD+CAAPGGKTT A L G ++VA
Sbjct: 79 YTVLHQAGAFYLQDPSAMAVAVALDPQPGERILDLCAAPGGKTTHAALLAARRGGAQIVA 138
Query: 292 VDRSHNKVMDIQKLAAEMGLKCITT 316
D ++V+ + + A +G C T
Sbjct: 139 NDIHRDRVLALAENAERVGAPCAIT 163
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 14/77 (18%)
Query: 423 PNSFDRVLLDAPCSALGL---RPRLFA-----AEETIQSLRNHGKYQRRMFDQAVQLVRP 474
P +FD +++DAPCS G+ P + A A E Q+L Q+ + A+ ++RP
Sbjct: 175 PQAFDAMVVDAPCSGEGMFRKDPAVRAEWRPDAPERFQAL------QKDILHHALTMLRP 228
Query: 475 GGIIVYSTCTINPGENE 491
GG +VYSTCT+NP ENE
Sbjct: 229 GGRLVYSTCTLNPLENE 245
>gi|300173481|ref|YP_003772647.1| ribosomal RNA small subunit methyltransferase F [Leuconostoc
gasicomitatum LMG 18811]
gi|299887860|emb|CBL91828.1| ribosomal RNA small subunit methyltransferase F [Leuconostoc
gasicomitatum LMG 18811]
Length = 485
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 49/75 (65%), Gaps = 2/75 (2%)
Query: 423 PNSFDRVLLDAPCSALGL-RPRLFAAEETIQSL-RNHGKYQRRMFDQAVQLVRPGGIIVY 480
P FD++LLDAPCS G+ R + A ++ + + + QR + +AV+++RPGG I+Y
Sbjct: 164 PQYFDKILLDAPCSGEGMFRKNITAIKQWHKDFPQELAELQREILHEAVKMLRPGGQIIY 223
Query: 481 STCTINPGENEALCA 495
STCT +P E+E + A
Sbjct: 224 STCTFSPEEDEQMIA 238
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 41/72 (56%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G ++ Q + + P+ GERILD+ AAPGGKTT +A+ ++ +G + + + N+
Sbjct: 76 GVVYSQEPSAQFVGETVRPEPGERILDLAAAPGGKTTHLAAFMQQKGLLWSNEIFLNRAK 135
Query: 301 DIQKLAAEMGLK 312
+ + MGL+
Sbjct: 136 ILSENVERMGLQ 147
>gi|422304597|ref|ZP_16391940.1| Ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa PCC 9806]
gi|389790263|emb|CCI13866.1| Ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa PCC 9806]
Length = 446
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 59/118 (50%), Gaps = 10/118 (8%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G LQ++ + + + LDPQ GE I+D CAAPGGKTT IA L+ D G ++A D++ +++
Sbjct: 234 GNYTLQDISAQLVTYLLDPQPGETIIDACAAPGGKTTHIAELMGDRGRILACDQTASRLR 293
Query: 301 DIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHK 358
++ + LK I + D S D P D I + S LHK
Sbjct: 294 QLEANIKRLDLKAIEIHLGD----------SRDRPQWHGIADRVLIDAPCSGLGTLHK 341
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 427 DRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTC 483
DRVL+DAPCS LG RP + +T ++L K Q + A V+P GI+VY+TC
Sbjct: 325 DRVLIDAPCSGLGTLHKRPDI-RWRQTPENLPVLAKRQGELLASAATWVKPKGILVYATC 383
Query: 484 TINPGENE 491
T+NP ENE
Sbjct: 384 TLNPLENE 391
>gi|315303726|ref|ZP_07874237.1| ribosomal RNA small subunit methyltransferase B [Listeria ivanovii
FSL F6-596]
gi|313627903|gb|EFR96525.1| ribosomal RNA small subunit methyltransferase B [Listeria ivanovii
FSL F6-596]
Length = 446
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 56/108 (51%), Gaps = 10/108 (9%)
Query: 396 KNMRRMRNGPGRNQCLGGRAEN------SKGFSPNSFDRVLLDAPCSALGL---RPRLFA 446
K + + R Q L R + S F P +FDR+L+DAPCS G+ +P +
Sbjct: 286 KKTKLIDQAAKRLQLLNIRTAHLDARTASTMFEPETFDRILVDAPCSGFGVLRRKPDIKY 345
Query: 447 AEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEALC 494
A+ T + + + Q + D QLV+ GI+VYSTCTI+ ENE +
Sbjct: 346 AK-TEKDIHKLAEIQLAILDDVSQLVKENGILVYSTCTIDKEENETVL 392
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 45/82 (54%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G+ +Q+ S++ A+AL + +LD CAAPGGKTT IA + G V A+D K
Sbjct: 229 DGKCSIQDESSMLAAYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKT 288
Query: 300 MDIQKLAAEMGLKCITTYKLDA 321
I + A + L I T LDA
Sbjct: 289 KLIDQAAKRLQLLNIRTAHLDA 310
>gi|119512103|ref|ZP_01631196.1| Fmu, rRNA SAM-dependent methyltransferase [Nodularia spumigena
CCY9414]
gi|119463261|gb|EAW44205.1| Fmu, rRNA SAM-dependent methyltransferase [Nodularia spumigena
CCY9414]
Length = 449
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 53/86 (61%), Gaps = 3/86 (3%)
Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
I LP F EG +Q+ + + + L PQ GE ++D CAAPGGKTT IA L+ DEGE
Sbjct: 225 IQNLPGFN---EGWWSVQDASAQLVGYLLHPQAGEVVIDACAAPGGKTTHIAELMGDEGE 281
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKCI 314
+ A DR+ +++ +++ A + L+ I
Sbjct: 282 IWACDRTASRLRKLKENAQRLHLQSI 307
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 46/71 (64%), Gaps = 2/71 (2%)
Query: 427 DRVLLDAPCSALGLRPRLFAAE--ETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCT 484
DR+LLDAPCS LG R A +T++S++ Q + Q Q V+PGG++VY+TCT
Sbjct: 325 DRLLLDAPCSGLGTLHRHADARWRQTLESVQELSILQTELISQTSQFVKPGGVLVYATCT 384
Query: 485 INPGENEALCA 495
++P ENE + +
Sbjct: 385 LHPAENEGVIS 395
>gi|423140349|ref|ZP_17127987.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. houtenae str. ATCC BAA-1581]
gi|379052903|gb|EHY70794.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. houtenae str. ATCC BAA-1581]
Length = 513
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + NH QR + D A +RPGG +VY
Sbjct: 219 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNHDIAATQRELLDSAFHALRPGGTLVY 278
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 279 STCTLNRQENEAVC 292
Score = 42.7 bits (99), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 239 LEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296
L G ++Q S++ AL D +R++DM AAPG KTT IA+ + + G ++A + S
Sbjct: 127 LSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNHGAILANEFSA 186
Query: 297 NKV 299
++V
Sbjct: 187 SRV 189
>gi|357008066|ref|ZP_09073065.1| hypothetical protein PelgB_01210, partial [Paenibacillus elgii B69]
Length = 287
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 48/76 (63%), Gaps = 10/76 (13%)
Query: 426 FDRVLLDAPCSALGLRPRLFAAEETIQSL------RNHGKYQRRMFDQAVQLVRPGGIIV 479
FD++L+DAPCS G+ F EE + + + + QR + QA ++++PGG++V
Sbjct: 176 FDKILIDAPCSGEGM----FRKEEDMAKVWRPDWPEKYAEMQRMLLRQAARMLKPGGLMV 231
Query: 480 YSTCTINPGENEALCA 495
YSTCT +P ENEA+ A
Sbjct: 232 YSTCTFSPEENEAMIA 247
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 41/64 (64%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G ++Q ++ A LD + GER+LD+CAAPGGKTT +A+ L+ G +VA D ++V
Sbjct: 85 GLYYIQEPSAMAPAELLDVRPGERVLDLCAAPGGKTTQLAAKLQGTGLIVANDVHPDRVK 144
Query: 301 DIQK 304
+ K
Sbjct: 145 ALVK 148
>gi|218291354|ref|ZP_03495308.1| Fmu (Sun) domain protein [Alicyclobacillus acidocaldarius LAA1]
gi|218238758|gb|EED05973.1| Fmu (Sun) domain protein [Alicyclobacillus acidocaldarius LAA1]
Length = 479
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 51/85 (60%), Gaps = 4/85 (4%)
Query: 236 YDVLE--GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEG--EVVA 291
Y VL G +LQ+ ++ A ALDPQ GERILD+CAAPGGKTT A L G ++VA
Sbjct: 79 YTVLHQAGAFYLQDPSAMAVAVALDPQPGERILDLCAAPGGKTTHAALLAARRGGAQIVA 138
Query: 292 VDRSHNKVMDIQKLAAEMGLKCITT 316
D ++V+ + + A +G C T
Sbjct: 139 NDIHRDRVLALAENAERVGAPCAIT 163
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 45/77 (58%), Gaps = 14/77 (18%)
Query: 423 PNSFDRVLLDAPCSALGL---RPRLFA-----AEETIQSLRNHGKYQRRMFDQAVQLVRP 474
P +FD +++D PCS G+ P + A A E Q+L Q+ + A+ ++RP
Sbjct: 175 PQAFDAMVVDTPCSGEGMFRKDPAVRAEWRPDAPERFQAL------QKDILHHALTMLRP 228
Query: 475 GGIIVYSTCTINPGENE 491
GG +VYSTCT+NP ENE
Sbjct: 229 GGRLVYSTCTLNPLENE 245
>gi|254168748|ref|ZP_04875590.1| NOL1/NOP2/sun family, putative [Aciduliprofundum boonei T469]
gi|289596783|ref|YP_003483479.1| RNA methylase, NOL1/NOP2/sun family [Aciduliprofundum boonei T469]
gi|197622374|gb|EDY34947.1| NOL1/NOP2/sun family, putative [Aciduliprofundum boonei T469]
gi|289534570|gb|ADD08917.1| RNA methylase, NOL1/NOP2/sun family [Aciduliprofundum boonei T469]
Length = 301
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G ++Q+L S+ AL+PQ+GE+ILDM AAPG KTT +A L+R EG +VA D + N++
Sbjct: 85 GYYYIQDLSSMAPVLALNPQRGEKILDMAAAPGSKTTMLAELMR-EGTIVANDINFNRLK 143
Query: 301 DIQKLAAEMGLKCITTYKLDALKA 324
+ +G+ + K DA K
Sbjct: 144 SLGGNLERLGITNVLITKKDAKKG 167
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 50/104 (48%), Gaps = 14/104 (13%)
Query: 397 NMRRMRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGL---RP---RLFAAEET 450
N+ R+ G L + + KG F+++LLDAPCS G P R+ E
Sbjct: 148 NLERL----GITNVLITKKDAKKGNFGIKFNKILLDAPCSGEGTVRKNPWGFRVVGDREH 203
Query: 451 IQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEALC 494
RN Q+ M A + V GGIIVYSTCT NP ENE +
Sbjct: 204 KMLARN----QKIMLKNASRHVNNGGIIVYSTCTFNPWENEGVV 243
>gi|407975157|ref|ZP_11156063.1| hypothetical protein NA8A_12645 [Nitratireductor indicus C115]
gi|407429242|gb|EKF41920.1| hypothetical protein NA8A_12645 [Nitratireductor indicus C115]
Length = 461
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 64/120 (53%), Gaps = 17/120 (14%)
Query: 387 TYVSKAD-TRKNMRRMRNGPGRNQCLGGRAE----NSKGFSPNS-FDRVLLDAPCSALGL 440
V+ AD + +RR+R R LG AE + + F P+ FD VLLDAPCS+ G
Sbjct: 287 ALVTAADLSASRLRRLRQNLDR---LGLSAEVVETDIRKFEPDQPFDAVLLDAPCSSTGT 343
Query: 441 RPR-----LFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEALCA 495
R + E I L QR + D AV+LV+PGG IV+S C+++P E EA+ +
Sbjct: 344 VRRHPDVPWTKSPEDIDKL---AALQRSLLDHAVKLVKPGGCIVFSNCSLDPAEGEAMLS 400
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 6/89 (6%)
Query: 225 MHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLR 284
+ + + QLP F EGE ++Q++ + + A KG+R+ D+CAAPGGKT A L
Sbjct: 231 LEHSVDQLPGFA---EGEWWVQDMAASLPARLFGDVKGKRVADLCAAPGGKT---AQLAH 284
Query: 285 DEGEVVAVDRSHNKVMDIQKLAAEMGLKC 313
V A D S +++ +++ +GL
Sbjct: 285 AGALVTAADLSASRLRRLRQNLDRLGLSA 313
>gi|403234848|ref|ZP_10913434.1| 16S rRNA methyltransferase B [Bacillus sp. 10403023]
Length = 447
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 54/85 (63%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
EG +Q+ S++ A AL +K + +LD CAAPGGKTT IA +L++ G+V+++D +K+
Sbjct: 230 EGYFTIQDESSMLVARALGVEKDDYVLDSCAAPGGKTTHIAQILQNTGKVISLDLHKHKI 289
Query: 300 MDIQKLAAEMGLKCITTYKLDALKA 324
I + +GL+ + T D+ KA
Sbjct: 290 KLIDEAVTRLGLENVETKAFDSRKA 314
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 421 FSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGII 478
F SFD++L+DAPCS G+ R + + +L N K Q + + L++ GI+
Sbjct: 318 FEVQSFDKILVDAPCSGFGVIRRKPDIKYSKSALDNSSLAKIQLDILTEVSTLLKKDGIL 377
Query: 479 VYSTCTINPGENEALC 494
VYSTCTI+ ENE +
Sbjct: 378 VYSTCTIDYEENEGVI 393
>gi|148262276|ref|YP_001228982.1| sun protein [Geobacter uraniireducens Rf4]
gi|146395776|gb|ABQ24409.1| sun protein [Geobacter uraniireducens Rf4]
Length = 448
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 57/101 (56%), Gaps = 3/101 (2%)
Query: 220 GIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAI 279
G+ + + +L SF D G +Q+ S + L P+ GE++LD CAAPGGK T +
Sbjct: 216 GVRIITAGSVARLQSFRD---GLFTVQDESSQLAVMFLSPEPGEKVLDACAAPGGKATHM 272
Query: 280 ASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
A L+ + GE++A D K+ I + AA +G+ CI T L+
Sbjct: 273 AQLMGNSGEIIACDVIGRKLRLIGENAARLGISCIKTVPLN 313
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 426 FDRVLLDAPCSALGLRPRLFAAE--ETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTC 483
F R+LLDAPCS LG+ R + +T + + Q+ + + ++ GGI++Y+TC
Sbjct: 326 FQRILLDAPCSGLGVIRRNPEGKWWKTAADVAELVRGQKTILENLAGYLKRGGILLYATC 385
Query: 484 TINPGENEAL 493
+ ENEA+
Sbjct: 386 STTREENEAV 395
>gi|317059336|ref|ZP_07923821.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. 3_1_5R]
gi|313685012|gb|EFS21847.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. 3_1_5R]
Length = 440
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 54/82 (65%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
EG+I +Q+ S + A L + GE +LD C+APGGKT+ +A +++EG+++++D +K+
Sbjct: 219 EGKIIVQDAASYLAAKNLGAKPGEIVLDTCSAPGGKTSVLAEAMKNEGQILSLDIHTHKI 278
Query: 300 MDIQKLAAEMGLKCITTYKLDA 321
IQ+ ++G+ + KLDA
Sbjct: 279 KLIQENCKKLGITIVQAVKLDA 300
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 8/71 (11%)
Query: 426 FDRVLLDAPCSALGLRPR----LF-AAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
FDR+L+DAPCS G+ + L+ EE I+ L QR + A ++++ GG +VY
Sbjct: 310 FDRILVDAPCSGYGVLAKKPEGLYNKKEENIKELVT---LQREILMAAAEVLKVGGEMVY 366
Query: 481 STCTINPGENE 491
STCTI P EN+
Sbjct: 367 STCTILPAENQ 377
>gi|402839079|ref|ZP_10887572.1| ribosomal RNA small subunit methyltransferase B [Eubacteriaceae
bacterium OBRC8]
gi|402270618|gb|EJU19876.1| ribosomal RNA small subunit methyltransferase B [Eubacteriaceae
bacterium OBRC8]
Length = 436
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 61/105 (58%), Gaps = 6/105 (5%)
Query: 223 VDMHNRIFQLPSFYDVLEGEIF------LQNLPSIVTAHALDPQKGERILDMCAAPGGKT 276
+D N I L +F D+ + +++ +Q+ S+ AL P+ E +LD+CAAPGGK+
Sbjct: 213 IDEENMIVSLKNFKDISKNDMYRNGFFSVQDYASMKAVLALSPEPFENVLDICAAPGGKS 272
Query: 277 TAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
+A L+ ++G + ++D S K+ +++ A +G+ I TY DA
Sbjct: 273 VFMAELMGNKGSITSLDISSKKLKLLEEQAKRLGINIIKTYVNDA 317
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 423 PNSFDRVLLDAPCSALG-LRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYS 481
N FD+VL D PCS +G LR + + + ++N Q++ ++ GI+VYS
Sbjct: 325 KNKFDKVLCDVPCSGIGILRRKPEIRYKKFEDIQNIIDVQKQTLKNTSLYLKKDGILVYS 384
Query: 482 TCTINPGENEALCA 495
TCT+ EN + +
Sbjct: 385 TCTLGKEENSDIIS 398
>gi|169333678|ref|ZP_02860871.1| hypothetical protein ANASTE_00062 [Anaerofustis stercorihominis DSM
17244]
gi|169259672|gb|EDS73638.1| ribosomal RNA small subunit methyltransferase B [Anaerofustis
stercorihominis DSM 17244]
Length = 450
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 49/75 (65%), Gaps = 8/75 (10%)
Query: 424 NSFDRVLLDAPCSALGLRPR-----LFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGII 478
N+FDR++ D PCS LG+ R ++ + E I+ L+ K QR++ + ++ ++ GG++
Sbjct: 325 NTFDRIICDVPCSGLGVIRRKPEILIYYSNEKIEELK---KVQRQILENGIRYLKKGGVL 381
Query: 479 VYSTCTINPGENEAL 493
+YSTCTIN ENE +
Sbjct: 382 IYSTCTINKEENEDI 396
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 57/102 (55%), Gaps = 3/102 (2%)
Query: 219 EGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTA 278
EGI V H + L + +G +Q+ +V AH+LD ++ ++LDMCAAPGGK+
Sbjct: 217 EGIEVLSHLNVTLLEEYK---KGLFSIQDCAGMVVAHSLDVKEDMKVLDMCAAPGGKSMH 273
Query: 279 IASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
+ L+ + G++V+ D K+ + ++G+ I T KLD
Sbjct: 274 TSELMNNSGDIVSCDIYTKKLEIMNFRMKQLGINNIMTKKLD 315
>gi|406600149|ref|YP_006745495.1| ribosomal RNA small subunit methyltransferase F [Leuconostoc
gelidum JB7]
gi|406371684|gb|AFS40609.1| ribosomal RNA small subunit methyltransferase F [Leuconostoc
gelidum JB7]
Length = 485
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 49/75 (65%), Gaps = 2/75 (2%)
Query: 423 PNSFDRVLLDAPCSALGL-RPRLFAAEETIQSL-RNHGKYQRRMFDQAVQLVRPGGIIVY 480
P FD++LLDAPCS G+ R + A ++ + + + QR + +AV+++RPGG I+Y
Sbjct: 164 PQYFDKILLDAPCSGEGMFRKNITAIKQWHKDFPQELAELQREILHEAVKMLRPGGQIIY 223
Query: 481 STCTINPGENEALCA 495
STCT +P E+E + A
Sbjct: 224 STCTFSPEEDEQMIA 238
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 41/72 (56%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G ++ Q + + P+ GERILD+ AAPGGKTT +A+ ++ +G + + + N+
Sbjct: 76 GVVYSQEPSAQFVGETVRPEPGERILDLAAAPGGKTTHLAAFMQQKGLLWSNEIFLNRAK 135
Query: 301 DIQKLAAEMGLK 312
+ + MGL+
Sbjct: 136 ILSENVERMGLQ 147
>gi|258563306|ref|XP_002582398.1| hypothetical protein UREG_07171 [Uncinocarpus reesii 1704]
gi|237907905|gb|EEP82306.1| hypothetical protein UREG_07171 [Uncinocarpus reesii 1704]
Length = 861
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 111/257 (43%), Gaps = 33/257 (12%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G I Q + S++ LD + G +LDMCAAPG K+ + ++ GE + + +K+
Sbjct: 138 GNISRQEVVSMIPPLLLDVRPGMVVLDMCAAPGSKSAQLMEMIH-AGEEEKMKKLADKLE 196
Query: 301 DIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEV 360
+ AA K + L+ + + + + D++Y + M +H+
Sbjct: 197 NNDAQAARQQGKVEISELLNGDADMEGFEDDGRSTGLLIANDSDYKRAH----MLIHQ-- 250
Query: 361 PSIAAEGLNGDKSCKEKVSNEKGVERTYVSKADTRKNMRRMRNGPGRNQCLGGRAENSKG 420
+ LN S V+N + R+ PG G RA N
Sbjct: 251 ----MKRLN---SPNLLVTNHDATLYPSI----------RL---PGSPTAAGKRAPNRYL 290
Query: 421 FSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKY--QRRMFDQAVQLVRPGGII 478
FDR+L D PCS G + + G + Q R+ +A+Q+++PGG +
Sbjct: 291 ----KFDRILADVPCSGDGTARKNVNVWKDWNPANGIGLFPTQNRILIRALQMLKPGGRV 346
Query: 479 VYSTCTINPGENEALCA 495
VYSTC++NP ENEA+ A
Sbjct: 347 VYSTCSMNPVENEAVVA 363
>gi|404491794|ref|YP_006715900.1| 16S rRNA (5-methyl-C967)-methyltransferase [Pelobacter carbinolicus
DSM 2380]
gi|77543940|gb|ABA87502.1| 16S rRNA (5-methyl-C967)-methyltransferase [Pelobacter carbinolicus
DSM 2380]
Length = 451
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 50/81 (61%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
EG LQ+ S++ +H L+PQ GERILD CAAPGGKTT +A+L + +VA+D +V
Sbjct: 233 EGIFQLQDQASMLISHLLNPQPGERILDACAAPGGKTTHMAALTDNRARIVALDLHPQRV 292
Query: 300 MDIQKLAAEMGLKCITTYKLD 320
I + A +G + I + D
Sbjct: 293 DLITRGANRLGCQGIEGHAWD 313
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 404 GPGRNQCLG--GRAENSKG----FSPNSFDRVLLDAPCSALGLRPR--LFAAEETIQSLR 455
G R C G G A + G P SFDR+L+DAPCS LG+ R L+
Sbjct: 298 GANRLGCQGIEGHAWDLTGVPDFLEPASFDRILVDAPCSGLGVLRRNPEIRWRRKPADLK 357
Query: 456 NHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENE 491
+ QR + L+RPGG +VYS CT +P E +
Sbjct: 358 EMARIQRAILGNVAPLLRPGGRLVYSLCTFSPEETQ 393
>gi|333919541|ref|YP_004493122.1| Fmu protein [Amycolicicoccus subflavus DQS3-9A1]
gi|333481762|gb|AEF40322.1| Fmu protein [Amycolicicoccus subflavus DQS3-9A1]
Length = 447
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 426 FDRVLLDAPCSALGLRPRLFAAEETIQS--LRNHGKYQRRMFDQAVQLVRPGGIIVYSTC 483
FDRVL+DAPC+ LG R A Q+ +R K QR + D AV+LVRPGG++VYSTC
Sbjct: 322 FDRVLVDAPCTGLGALRRRPEARWRRQASDIRELAKLQRELLDSAVKLVRPGGVVVYSTC 381
Query: 484 TINPGENEALCA 495
+ + E + A
Sbjct: 382 SPHLAETSMIVA 393
>gi|20093483|ref|NP_613330.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
gi|19886312|gb|AAM01260.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
Length = 444
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 41/60 (68%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
EG +F Q+ S AH LDPQ GE ++D+CAAPGGKT L+ EGE++AVD+S ++
Sbjct: 232 EGLVFTQDKASAAVAHVLDPQPGEFVVDLCAAPGGKTLHALCLMEGEGEILAVDKSDWRL 291
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 427 DRVLLDAPCSALG---LRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTC 483
DR ++D PCS +G RP T + +R + K Q + + A++ VRPGGI+VYSTC
Sbjct: 327 DRAIVDPPCSGMGSVQKRPET-RWNVTKKRVRRYAKLQSELLEAAIKTVRPGGIVVYSTC 385
Query: 484 TINPGENE 491
T+ ENE
Sbjct: 386 TLTINENE 393
>gi|363891855|ref|ZP_09319030.1| ribosomal RNA small subunit methyltransferase B [Eubacteriaceae
bacterium CM2]
gi|361964850|gb|EHL17856.1| ribosomal RNA small subunit methyltransferase B [Eubacteriaceae
bacterium CM2]
Length = 436
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 61/105 (58%), Gaps = 6/105 (5%)
Query: 223 VDMHNRIFQLPSFYDVLEGEIF------LQNLPSIVTAHALDPQKGERILDMCAAPGGKT 276
+D N I L +F D+ + +++ +Q+ S+ AL P+ E +LD+CAAPGGK+
Sbjct: 213 IDEENMIVSLKNFKDISKNDMYRNGFFSVQDYASMKAVLALSPEPFENVLDICAAPGGKS 272
Query: 277 TAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
+A L+ ++G + ++D S K+ +++ A +G+ I TY DA
Sbjct: 273 VFMAELMGNKGSITSLDISSKKLKLLEEQAKRLGINIIKTYVNDA 317
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 423 PNSFDRVLLDAPCSALG-LRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYS 481
N FD+VL D PCS +G LR + + + ++N Q+++ A ++ GI+VYS
Sbjct: 325 KNKFDKVLCDVPCSGIGILRRKPEIRYKKFEDIQNIIDVQKQILKNASLYLKKDGILVYS 384
Query: 482 TCTINPGENEALCA 495
TCT+ EN + +
Sbjct: 385 TCTLGKEENSDIIS 398
>gi|402837092|ref|ZP_10885623.1| ribosomal RNA small subunit methyltransferase B [Mogibacterium sp.
CM50]
gi|402270108|gb|EJU19377.1| ribosomal RNA small subunit methyltransferase B [Mogibacterium sp.
CM50]
Length = 423
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 50/85 (58%)
Query: 237 DVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296
+ + G +Q+ S+ + + +P G+++LD+CAAPGGK A+A ++ DEG ++A D
Sbjct: 224 EYMRGMFSIQSTSSLRSIESFNPAPGDKVLDLCAAPGGKAAAMAEMMNDEGVIIATDIHE 283
Query: 297 NKVMDIQKLAAEMGLKCITTYKLDA 321
+++ I A +GL CI DA
Sbjct: 284 HRIRLINDTTARLGLGCIDAEVADA 308
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 4/73 (5%)
Query: 426 FDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYST 482
FD+VL D PCS LG+ +P L + L K Q ++ + A + ++PGG ++YST
Sbjct: 319 FDKVLADVPCSGLGVIAGKPEL-KLRVDLDELPELYKLQYQILENAYRYLKPGGTLMYST 377
Query: 483 CTINPGENEALCA 495
CTIN ENE + A
Sbjct: 378 CTINKKENEQIVA 390
>gi|421858977|ref|ZP_16291226.1| tRNA and rRNA cytosine-C5-methylase [Paenibacillus popilliae ATCC
14706]
gi|410831496|dbj|GAC41663.1| tRNA and rRNA cytosine-C5-methylase [Paenibacillus popilliae ATCC
14706]
Length = 454
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 48/81 (59%), Gaps = 8/81 (9%)
Query: 415 AENSKGFSPNSFDRVLLDAPCSALGL---RP--RLFAAEETIQSLRNHGKYQRRMFDQAV 469
AE + P SFD VLLDAPC+ G+ +P + EE + ++ Q R+ +A
Sbjct: 305 AELGQALPPASFDAVLLDAPCTGFGVIRRKPDIKWTKREEDVAAI---AALQERLLTEAA 361
Query: 470 QLVRPGGIIVYSTCTINPGEN 490
++VRPGG +VYSTCT+ P EN
Sbjct: 362 RMVRPGGRLVYSTCTVEPEEN 382
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 48/81 (59%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G + +Q+ S++ AL P+ G RILD CAAPGGK+T IA + D GEV A D KV
Sbjct: 224 GRLSVQDESSMLVVEALRPEPGMRILDCCAAPGGKSTHIAERMGDRGEVTANDVHAYKVG 283
Query: 301 DIQKLAAEMGLKCITTYKLDA 321
I++ A +GL + +DA
Sbjct: 284 LIEEQATRLGLTSLHVMNVDA 304
>gi|342217132|ref|ZP_08709779.1| ribosomal RNA small subunit methyltransferase B [Peptoniphilus sp.
oral taxon 375 str. F0436]
gi|341588022|gb|EGS31422.1| ribosomal RNA small subunit methyltransferase B [Peptoniphilus sp.
oral taxon 375 str. F0436]
Length = 424
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 425 SFDRVLLDAPCSALGLRPRL--FAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYST 482
+FD VLLDAPCS GL R + TI+ + + K Q+ + + + +RPGGI+VYST
Sbjct: 317 AFDLVLLDAPCSGFGLLKRKPEIKYKRTIKDINSLVKLQKSLLEASATCLRPGGILVYST 376
Query: 483 CTINPGENEAL 493
CTI+ ENE L
Sbjct: 377 CTISKEENEYL 387
Score = 42.0 bits (97), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 53/97 (54%), Gaps = 4/97 (4%)
Query: 240 EGEIFLQNLPSI-VTAHALDPQKGE--RILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296
+G ++Q+ ++ V AL Q+ E + LD+C APGGK+ +A L+R + E+ D S
Sbjct: 224 KGLFYVQDRAAMEVADFALKGQENEFKKALDVCGAPGGKSIDLA-LIRPDLEIQCCDVSM 282
Query: 297 NKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESND 333
KV IQ+ +GLK I+ D + + + E+ D
Sbjct: 283 KKVKRIQENIQRLGLKNISPKLRDGQRPSKTEKEAFD 319
>gi|33862543|ref|NP_894103.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9313]
gi|33640656|emb|CAE20445.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9313]
Length = 451
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
+ Q P + +G +Q+ S + A L PQ G+RILD CAAPGGK T + L+ GE
Sbjct: 241 LSQWPGYQ---QGHWCVQDRSSQLVAPLLRPQPGDRILDACAAPGGKATHLVELMGGSGE 297
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
V AVDRS ++ + AA +G C+ DA
Sbjct: 298 VWAVDRSAGRLKRLADNAARLGGDCLNALVADA 330
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 424 NSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGK--YQRRMFDQAVQLVRPGGIIVYS 481
SF R+L+DAPCS LG R A + L+ G Q ++ + + L+ GG +VY+
Sbjct: 342 GSFQRILVDAPCSGLGTLARHADARWRVTPLQVEGLVILQSKLLEGLLPLLSSGGRLVYA 401
Query: 482 TCTINPGEN 490
TCTI+P EN
Sbjct: 402 TCTIHPAEN 410
>gi|407036203|gb|EKE38056.1| Proliferating-cell nucleolar antigen p120, putative [Entamoeba
nuttalli P19]
Length = 497
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 51/81 (62%), Gaps = 2/81 (2%)
Query: 239 LEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNK 298
L G+ LQ+ S V+ AL PQ E+ILDMCAAPGGKTT IA+L++D G +VA D S ++
Sbjct: 267 LAGQYILQSSSSWVSVIALAPQPNEKILDMCAAPGGKTTHIAALMKDTGVLVANDISKDR 326
Query: 299 VMDIQKLAAEMGL--KCITTY 317
+ + +G+ IT Y
Sbjct: 327 LKAVIGNVHRLGITNTIITNY 347
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 6/74 (8%)
Query: 426 FDRVLLDAPCSALGLRPRLFAAE--ETIQSLRNHGKYQRRMFDQAVQLVRP----GGIIV 479
FDRVL+DAPC+ LG+ R A + ++ Q +++ + Q+ + A+ V P GG +V
Sbjct: 359 FDRVLVDAPCTGLGIISRDAAVKLSKSEQDIKDCTRIQKELILHAIDSVNPKSKTGGYVV 418
Query: 480 YSTCTINPGENEAL 493
YSTC+I ENEA+
Sbjct: 419 YSTCSITVEENEAV 432
>gi|428298107|ref|YP_007136413.1| sun protein [Calothrix sp. PCC 6303]
gi|428234651|gb|AFZ00441.1| sun protein [Calothrix sp. PCC 6303]
Length = 448
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 66/113 (58%), Gaps = 5/113 (4%)
Query: 385 ERTYVSKADTRKNMRRMRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGLRPRL 444
+RT ++N++R++ R C+G + + F+ + D+VLLDAPCS LG R
Sbjct: 285 DRTASRMGKLKENIQRLQIQSIRT-CVGD-SRDLPQFTGIA-DKVLLDAPCSGLGTLHRH 341
Query: 445 FAAE--ETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEALCA 495
A +T +++ K Q + Q + V+PGGI+VY+TCT++P ENEA+ A
Sbjct: 342 ADARWRQTSANVQELAKLQTELISQTSKFVKPGGILVYATCTLHPQENEAVIA 394
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 59/98 (60%), Gaps = 4/98 (4%)
Query: 220 GIAVDMHN-RIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTA 278
G+ + HN RI LP F L+G +Q+ + + + LDP+ E I+D CAAPGGKTT
Sbjct: 214 GLRLLGHNGRIQDLPGF---LDGWWTVQDSSAQLVGYLLDPKLNEVIIDTCAAPGGKTTH 270
Query: 279 IASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITT 316
IA L+ D+G + A DR+ +++ +++ + ++ I T
Sbjct: 271 IAELMEDQGTIWACDRTASRMGKLKENIQRLQIQSIRT 308
>gi|297583987|ref|YP_003699767.1| sun protein [Bacillus selenitireducens MLS10]
gi|297142444|gb|ADH99201.1| sun protein [Bacillus selenitireducens MLS10]
Length = 457
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 55/95 (57%), Gaps = 1/95 (1%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
EG +Q+ S++ LDP+ G R+LD CAAPGGKT+ IA + DEGE+ A+D +K+
Sbjct: 235 EGRCSIQDEGSMMVTGLLDPKPGMRVLDSCAAPGGKTSHIAERMNDEGELYAMDIHKHKI 294
Query: 300 MDIQKLAAEMGLKCITTYKLDA-LKAVRRKNESND 333
I A +GL + K DA L + + ES D
Sbjct: 295 KLIDAQAERLGLSVVHGLKGDARLAGEQLEEESFD 329
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 43/76 (56%), Gaps = 8/76 (10%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRL--FAAEETIQSLRNHGKYQRRMFDQAVQLVRPG 475
SFD +L+DAPCS LG+ +P L +E I+ L Q + Q L++PG
Sbjct: 323 LEEESFDCILVDAPCSGLGVIQRKPDLKWTKSERDIERL---TVIQGEILKQVWPLLKPG 379
Query: 476 GIIVYSTCTINPGENE 491
G +VYSTCTI+ ENE
Sbjct: 380 GRLVYSTCTIDYEENE 395
>gi|221056324|ref|XP_002259300.1| methyltransferase [Plasmodium knowlesi strain H]
gi|193809371|emb|CAQ40073.1| methyltransferase, putative [Plasmodium knowlesi strain H]
Length = 641
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 47/69 (68%), Gaps = 1/69 (1%)
Query: 426 FDRVLLDAPCSALGLRPRLFAAE-ETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCT 484
FD+++LDAPCS G+ + A +T++ +R + QR++ + A+ LV+ GGI+VYSTC+
Sbjct: 401 FDKIILDAPCSGTGVVNKNKGARRKTLKEIRELAQKQRKLLNNAISLVKNGGIVVYSTCS 460
Query: 485 INPGENEAL 493
I ENE +
Sbjct: 461 ITVEENEQV 469
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 52/96 (54%)
Query: 234 SFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVD 293
S + + G +Q+ S++ L+ Q + +LDMCAAPGGK T I +L ++ G V A D
Sbjct: 303 SLNEYMYGYYMIQSASSLIPVLELNVQPDDTVLDMCAAPGGKCTFICALQKNRGFVYAND 362
Query: 294 RSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKN 329
+ + I+ A+ MG+ + DALK ++ N
Sbjct: 363 INKMRCKAIEANASRMGIHNLVITSFDALKVGQKWN 398
>gi|336236100|ref|YP_004588716.1| sun protein [Geobacillus thermoglucosidasius C56-YS93]
gi|335362955|gb|AEH48635.1| sun protein [Geobacillus thermoglucosidasius C56-YS93]
Length = 447
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 52/81 (64%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G I +Q+ S++ A AL P++ ER+LD CAAPGGK+T IA L+ + G+V+ D +KV
Sbjct: 231 GWITIQDESSMLVARALGPKEHERVLDSCAAPGGKSTHIAELMNNTGQVICADIHEHKVN 290
Query: 301 DIQKLAAEMGLKCITTYKLDA 321
I++ A + L I+ LD+
Sbjct: 291 LIEENAKRLQLTNISARTLDS 311
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 47/80 (58%), Gaps = 8/80 (10%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAA--EETIQSLRNHGKYQRRMFDQAVQLVRPG 475
F +FD++L+DAPCS G+ +P + A E I SL QR + D L++ G
Sbjct: 318 FERETFDKILVDAPCSGFGVIRRKPDIKYAKTEADISSL---AALQREILDAVAPLLKKG 374
Query: 476 GIIVYSTCTINPGENEALCA 495
G +VYSTCTI+ ENEA+ A
Sbjct: 375 GTLVYSTCTIDHEENEAVIA 394
>gi|268316267|ref|YP_003289986.1| RNA methylase [Rhodothermus marinus DSM 4252]
gi|262333801|gb|ACY47598.1| RNA methylase, NOL1/NOP2/sun family [Rhodothermus marinus DSM 4252]
Length = 321
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 49/77 (63%), Gaps = 5/77 (6%)
Query: 421 FSPNSFDRVLLDAPCSALGL----RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGG 476
+ P SFD VL+DAPCS+ G P FA + + +R + Q R+ AVQ +RPGG
Sbjct: 175 YRPESFDYVLVDAPCSSEGRFHLSDPDTFAYW-SPRKIREMARKQYRLLVSAVQSLRPGG 233
Query: 477 IIVYSTCTINPGENEAL 493
++VY+TCT+ P ENEA+
Sbjct: 234 VLVYATCTMAPEENEAV 250
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 48/91 (52%)
Query: 243 IFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDI 302
I++Q+L S++ L P+ R+LD+CAAPG KT +A L++ GE+ AV+ + +
Sbjct: 91 IYVQDLASMLPPLVLAPEPDARVLDLCAAPGSKTLQLACLMQGRGEIAAVEVVRPRFYRL 150
Query: 303 QKLAAEMGLKCITTYKLDALKAVRRKNESND 333
+ G + Y D + R + ES D
Sbjct: 151 KANVQAYGAPNVRLYLQDGTRVGRYRPESFD 181
>gi|312111726|ref|YP_003990042.1| sun protein [Geobacillus sp. Y4.1MC1]
gi|423720641|ref|ZP_17694823.1| ribosomal RNA small subunit methyltransferase B [Geobacillus
thermoglucosidans TNO-09.020]
gi|311216827|gb|ADP75431.1| sun protein [Geobacillus sp. Y4.1MC1]
gi|383365994|gb|EID43285.1| ribosomal RNA small subunit methyltransferase B [Geobacillus
thermoglucosidans TNO-09.020]
Length = 447
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 52/81 (64%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G I +Q+ S++ A AL P++ ER+LD CAAPGGK+T IA L+ + G+V+ D +KV
Sbjct: 231 GWITIQDESSMLVARALGPKEHERVLDSCAAPGGKSTHIAELMNNTGQVICADIHEHKVN 290
Query: 301 DIQKLAAEMGLKCITTYKLDA 321
I++ A + L I+ LD+
Sbjct: 291 LIEENAKRLQLTNISARTLDS 311
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 47/80 (58%), Gaps = 8/80 (10%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAA--EETIQSLRNHGKYQRRMFDQAVQLVRPG 475
F +FD++L+DAPCS G+ +P + A E I SL QR + D L++ G
Sbjct: 318 FERETFDKILVDAPCSGFGVIRRKPDIKYAKTEADISSL---AALQREILDAVAPLLKKG 374
Query: 476 GIIVYSTCTINPGENEALCA 495
G +VYSTCTI+ ENEA+ A
Sbjct: 375 GTLVYSTCTIDHEENEAVIA 394
>gi|67479223|ref|XP_654993.1| Proliferating-cell nucleolar antigen p120 [Entamoeba histolytica
HM-1:IMSS]
gi|56472094|gb|EAL49607.1| Proliferating-cell nucleolar antigen p120, putative [Entamoeba
histolytica HM-1:IMSS]
Length = 495
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/61 (54%), Positives = 44/61 (72%)
Query: 239 LEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNK 298
L G+ LQ+ S V+ AL PQ E+ILDMCAAPGGKTT IA+L++D G +VA D S ++
Sbjct: 265 LAGQYILQSSSSWVSVIALAPQPNEKILDMCAAPGGKTTHIAALMKDTGVLVANDISKDR 324
Query: 299 V 299
+
Sbjct: 325 L 325
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 6/74 (8%)
Query: 426 FDRVLLDAPCSALGLRPRLFAAE--ETIQSLRNHGKYQRRMFDQAVQLVRP----GGIIV 479
FDRVL+DAPC+ LG+ R A + ++ Q +++ + Q+ + A+ V P GG +V
Sbjct: 357 FDRVLVDAPCTGLGIISRDAAVKLSKSEQDIKDCTRIQKELILHAIDSVNPKSKTGGYVV 416
Query: 480 YSTCTINPGENEAL 493
YSTC+I ENEA+
Sbjct: 417 YSTCSITVEENEAV 430
>gi|326790876|ref|YP_004308697.1| sun protein [Clostridium lentocellum DSM 5427]
gi|326541640|gb|ADZ83499.1| sun protein [Clostridium lentocellum DSM 5427]
Length = 445
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 53/82 (64%), Gaps = 3/82 (3%)
Query: 233 PSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAV 292
PSF +GE +Q+ +++ AH + PQKG+ ILDMC+APGGK+ +A L+ + G +V+
Sbjct: 227 PSFK---KGEWTVQDESAMLVAHVMAPQKGDCILDMCSAPGGKSIHMAELMENAGRIVSC 283
Query: 293 DRSHNKVMDIQKLAAEMGLKCI 314
D +K+ I+K A MG+ I
Sbjct: 284 DIHPHKLELIKKNAERMGITII 305
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 57/112 (50%), Gaps = 22/112 (19%)
Query: 395 RKNMRRM---------RNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGLRPRL- 444
+KN RM ++G +N+C +FD+VLLDAPCS LG+ R
Sbjct: 294 KKNAERMGITIIEPTLQDGTLKNEC-----------YVEAFDKVLLDAPCSGLGIMKRKP 342
Query: 445 -FAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEALCA 495
++ + L Q+++ A+ ++PGG +VYSTCTI+ ENE + +
Sbjct: 343 DIRTHKSKEGLLEIVALQKKLALAAISYLKPGGRLVYSTCTISHEENEGMVS 394
>gi|312091304|ref|XP_003146932.1| hypothetical protein LOAG_11363 [Loa loa]
gi|307757905|gb|EFO17139.1| hypothetical protein LOAG_11363 [Loa loa]
Length = 434
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 82/168 (48%), Gaps = 9/168 (5%)
Query: 156 KGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIF 215
KG V +S VE P L + LQ Q + + S L + A
Sbjct: 120 KGHVAQLSAVVENPRYARVNTLKWSFDEALQALQDEGWSI--SSLEPQEDDDWYKIAVSS 177
Query: 216 RASEGIAVDMH-NRIFQLPSFYD------VLEGEIFLQNLPSIVTAHALDPQKGERILDM 268
+ +D H N + P+ D V++G + LQ+ S +++ L+P+ G I D+
Sbjct: 178 MLKNQVYIDCHVNELLLFPANADLHQHWMVIDGYLLLQDKASCLSSLVLNPKAGTYIFDI 237
Query: 269 CAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITT 316
CAAPG KTT +A+L+++EG++ A+DR+ ++V + + + G ++T
Sbjct: 238 CAAPGMKTTHLAALVQNEGKIWAIDRASDRVKTLCTMVDKAGAINVST 285
>gi|167540287|ref|XP_001741734.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165893617|gb|EDR21802.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 505
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 51/81 (62%), Gaps = 2/81 (2%)
Query: 239 LEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNK 298
L G+ LQ+ S V+ AL PQ E+ILDMCAAPGGKTT IA+L++D G +VA D S ++
Sbjct: 275 LAGQYILQSSSSWVSVIALAPQPNEKILDMCAAPGGKTTHIAALMKDTGILVANDISKDR 334
Query: 299 VMDIQKLAAEMGL--KCITTY 317
+ + +G+ IT Y
Sbjct: 335 LKAVIGNVHRLGITNTIITNY 355
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 6/74 (8%)
Query: 426 FDRVLLDAPCSALGLRPRLFAAE--ETIQSLRNHGKYQRRMFDQAVQLVRP----GGIIV 479
FDRVL+DAPC+ LG+ R A + ++ Q +++ + Q+ + A+ V P GG +V
Sbjct: 367 FDRVLVDAPCTGLGIISRDAAVKLSKSEQDIKDCTRIQKELILHAIDSVNPKSKTGGYVV 426
Query: 480 YSTCTINPGENEAL 493
YSTC+I ENEA+
Sbjct: 427 YSTCSITVEENEAV 440
>gi|72383594|ref|YP_292949.1| Fmu, rRNA SAM-dependent methyltransferase [Prochlorococcus marinus
str. NATL2A]
gi|72003444|gb|AAZ59246.1| Fmu, rRNA SAM-dependent methyltransferase [Prochlorococcus marinus
str. NATL2A]
Length = 438
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 50/82 (60%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
EG+ +Q+ S + A +L P GE+ILD CAAPGGK+T IA L+ +EG + +VDRS +
Sbjct: 234 EGKWSVQDRSSQLIAPSLGPLPGEKILDACAAPGGKSTHIAELINNEGNLWSVDRSSRRS 293
Query: 300 MDIQKLAAEMGLKCITTYKLDA 321
I + +G KC+ D+
Sbjct: 294 KKILANSERLGTKCLQILVADS 315
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 44/77 (57%), Gaps = 12/77 (15%)
Query: 419 KGFSPNSFDRVLLDAPCSALGLRPRLFAA-----EETIQSLRNHGKYQRRMFDQAVQLVR 473
KGF FDR+L+DAPCS LG R A ++ IQ L Q ++ + L++
Sbjct: 326 KGF----FDRILIDAPCSGLGTLARHPDARWRMNQDNIQQLV---AVQSQLLNSLAPLLK 378
Query: 474 PGGIIVYSTCTINPGEN 490
GG +VYSTCTI+P EN
Sbjct: 379 NGGKLVYSTCTIHPEEN 395
>gi|194476557|ref|YP_002048736.1| Sun protein (Fmu protein) [Paulinella chromatophora]
gi|171191564|gb|ACB42526.1| Sun protein (Fmu protein) [Paulinella chromatophora]
Length = 451
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
Query: 425 SFDRVLLDAPCSALGLRPRLFAAEE--TIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYST 482
+FDR+L+DAPCS LG R A T ++ + Q R+ + L++PGG +VY+T
Sbjct: 345 TFDRILIDAPCSGLGTLVRHSDARWRITFNDIKELERIQERLLKGIIPLLKPGGKLVYAT 404
Query: 483 CTINPGENE 491
CTINP ENE
Sbjct: 405 CTINPNENE 413
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 17/129 (13%)
Query: 202 IGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQK 261
+ QG A++ R G + G F+L G +Q+ + + LDP
Sbjct: 230 LSQGIAILGRLGNLQILPG---------FKL--------GHWCIQDRAAQWISPLLDPHP 272
Query: 262 GERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
G R+LD+C+APGGK+T IA L+ D GE+ A+D S ++ + A +GL+ I T D
Sbjct: 273 GHRVLDVCSAPGGKSTHIAELMGDVGEIWALDSSKVRLQKVVLNAKRLGLQTIHTLVADG 332
Query: 322 LKAVRRKNE 330
+ K E
Sbjct: 333 ITISDLKPE 341
>gi|449701642|gb|EMD42424.1| proliferating-cell nucleolar antigen p120, putative [Entamoeba
histolytica KU27]
Length = 503
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/61 (54%), Positives = 44/61 (72%)
Query: 239 LEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNK 298
L G+ LQ+ S V+ AL PQ E+ILDMCAAPGGKTT IA+L++D G +VA D S ++
Sbjct: 273 LAGQYILQSSSSWVSVIALAPQPNEKILDMCAAPGGKTTHIAALMKDTGVLVANDISKDR 332
Query: 299 V 299
+
Sbjct: 333 L 333
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 6/74 (8%)
Query: 426 FDRVLLDAPCSALGLRPRLFAAE--ETIQSLRNHGKYQRRMFDQAVQLVRP----GGIIV 479
FDRVL+DAPC+ LG+ R A + ++ Q +++ + Q+ + A+ V P GG +V
Sbjct: 365 FDRVLVDAPCTGLGIISRDAAVKLSKSEQDIKDCTRIQKELILHAIDSVNPKSKTGGYVV 424
Query: 480 YSTCTINPGENEAL 493
YSTC+I ENEA+
Sbjct: 425 YSTCSITVEENEAV 438
>gi|33866211|ref|NP_897770.1| Sun protein (Fmu protein) [Synechococcus sp. WH 8102]
gi|33639186|emb|CAE08194.1| Sun protein (Fmu protein) [Synechococcus sp. WH 8102]
Length = 441
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 71/142 (50%), Gaps = 2/142 (1%)
Query: 189 QTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNL 248
+ +P R+ + +A +S I +G+ V+ H + YD +G +Q+
Sbjct: 190 RVNPLRASRAEVMAALESAGISSHPIDGCPQGLQVEGHKGDLRSWPGYD--DGHWCVQDR 247
Query: 249 PSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAE 308
+ L Q G+RILD CAAPGGKTT +A L+ D+ E+ AVDRS ++ + AA
Sbjct: 248 AAQWVTPLLAAQPGDRILDACAAPGGKTTHLAELVNDQAEIWAVDRSAGRLKRVAANAAR 307
Query: 309 MGLKCITTYKLDALKAVRRKNE 330
+G I DA + ++ + E
Sbjct: 308 LGHGSIQALAADAEQLLKDRPE 329
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 45/109 (41%), Gaps = 31/109 (28%)
Query: 402 RNGPGRNQCLGGRAENSKGFSPN---SFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHG 458
R G G Q L AE P F R+L+DAPCS LG +L H
Sbjct: 307 RLGHGSIQALAADAEQLLKDRPEWRGRFQRILIDAPCSGLG-------------TLARHP 353
Query: 459 KYQRRMFDQAVQLVRP---------------GGIIVYSTCTINPGENEA 492
+ RM A++ + P G +VY+TCTI+P EN A
Sbjct: 354 DARWRMTPSAIEGLLPLQRSLLEGLLPLLAETGTLVYATCTIHPAENTA 402
>gi|367468304|ref|ZP_09468183.1| Ribosomal RNA small subunit methyltransferase B [Patulibacter sp.
I11]
gi|365816611|gb|EHN11630.1| Ribosomal RNA small subunit methyltransferase B [Patulibacter sp.
I11]
Length = 352
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 51/84 (60%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
EG + S+ A A+DPQ GER+LD+CAAPGGKTT +A+L+ EG +VA+++ +
Sbjct: 168 EGHYVAMSRGSMRAARAVDPQPGERVLDLCAAPGGKTTHMAALMGGEGTIVAIEKHGGRA 227
Query: 300 MDIQKLAAEMGLKCITTYKLDALK 323
+++ +G + DAL+
Sbjct: 228 RALRRTCERVGAGNVEVISGDALE 251
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 58/100 (58%), Gaps = 9/100 (9%)
Query: 396 KNMRRM--RNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGL---RPRL-FAAEE 449
+ +RR R G G + + G A + + SFDRVLLDAPCS LG P L + +E
Sbjct: 228 RALRRTCERVGAGNVEVISGDALEVE-LAAGSFDRVLLDAPCSGLGTLASHPDLRWRVQE 286
Query: 450 TIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGE 489
+ L G+ Q R+ + A + V+PGG +VYS CT+NPGE
Sbjct: 287 --RDLPELGRLQGRLLEVAQRAVKPGGRLVYSVCTLNPGE 324
>gi|340624444|ref|YP_004742897.1| putative proliferating-cell nucleolar antigen [Methanococcus
maripaludis X1]
gi|339904712|gb|AEK20154.1| putative proliferating-cell nucleolar antigen [Methanococcus
maripaludis X1]
Length = 265
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 104/212 (49%), Gaps = 22/212 (10%)
Query: 230 FQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEV 289
F + S + L G FLQ++ SI+ + L+P K + +LDMCAAPGGKTT +A L+ +EG +
Sbjct: 46 FSMGSTPEYLLGYYFLQSISSIIPSITLNPSKDDEVLDMCAAPGGKTTHLAQLMENEGSI 105
Query: 290 VAVDRSHNKVMDIQKLAAEMGLK---CITTYKLDALKAVRRKNESNDEPNMCNS-KDNNY 345
+AV+ + N++ ++ MG K I T ++ K +R D P N KD+N
Sbjct: 106 LAVEINKNRLKSLRSNINRMGFKNTLMINTNAVNIDKKLRFNKILLDAPCTGNEIKDSNR 165
Query: 346 ITSQ------TSDSMKLHKEVPSIAAEGLNGD---KSCKEKVSNEKGVERTYVSKADTRK 396
+ ++ ++L + + +G G+ +C ++ ++ + R Y+ K T K
Sbjct: 166 VKTKRDILFCAKRQVELFRTAIEVLKDG--GELVYSTCSPEIEEDEDIVR-YILK--TNK 220
Query: 397 NMRRMR----NGPGRNQCLGGRAENSKGFSPN 424
NM + + PG N G K PN
Sbjct: 221 NMELIELNVDDFPGINMIEGEVKGTLKVIPPN 252
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 426 FDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTI 485
F+++LLDAPC+ ++ +T + + K Q +F A+++++ GG +VYSTC+
Sbjct: 146 FNKILLDAPCTGNEIKDS--NRVKTKRDILFCAKRQVELFRTAIEVLKDGGELVYSTCSP 203
Query: 486 NPGENEAL 493
E+E +
Sbjct: 204 EIEEDEDI 211
>gi|297565757|ref|YP_003684729.1| RNA methylase [Meiothermus silvanus DSM 9946]
gi|296850206|gb|ADH63221.1| RNA methylase, NOL1/NOP2/sun family [Meiothermus silvanus DSM 9946]
Length = 457
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 48/78 (61%), Gaps = 14/78 (17%)
Query: 426 FDRVLLDAPCSALGLRPRLFAAEETIQSLRNHG--------KYQRRMFDQAVQLVRPGGI 477
FDRV+LDAPCS G+ F E +++R+ G + QR + D A +LVRPGG+
Sbjct: 176 FDRVVLDAPCSGEGM----FRKEP--EAMRHWGPTAPERSARVQRSLIDHAGRLVRPGGV 229
Query: 478 IVYSTCTINPGENEALCA 495
+VYSTCT P ENE + A
Sbjct: 230 LVYSTCTFAPEENEQVIA 247
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 7/98 (7%)
Query: 218 SEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTT 277
+EG R P FY G ++Q + DP+ GER+LD+ AAPGGKTT
Sbjct: 66 AEGFYYPPDARPGPHPFFY---AGLYYIQEPSAQAVGVLADPRPGERVLDLAAAPGGKTT 122
Query: 278 AIASLLRDEGEVVA--VD--RSHNKVMDIQKLAAEMGL 311
+A+ + +G ++A VD R+ + ++++ A + +
Sbjct: 123 HLAARMGGQGLLIANEVDSKRTRGLLENVERWGARLAV 160
>gi|363891053|ref|ZP_09318336.1| hypothetical protein HMPREF9628_00820 [Eubacteriaceae bacterium
CM5]
gi|361962020|gb|EHL15169.1| hypothetical protein HMPREF9628_00820 [Eubacteriaceae bacterium
CM5]
Length = 436
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 60/105 (57%), Gaps = 6/105 (5%)
Query: 223 VDMHNRIFQLPSFYDVLEGEIF------LQNLPSIVTAHALDPQKGERILDMCAAPGGKT 276
+D N I L +F D+ + +++ +Q+ S+ T L P+ E +LD+CAAPGGK+
Sbjct: 213 IDEENMIVSLKNFKDISKNDMYKKGLFSVQDYASMKTVLVLSPKSYEDVLDICAAPGGKS 272
Query: 277 TAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
+A L+ ++G + ++D S K+ +++ +G+ I TY DA
Sbjct: 273 VFMAELMENKGSITSLDISSKKLKLLEEQTKRLGIDIIKTYVNDA 317
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 423 PNSFDRVLLDAPCSALG-LRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYS 481
N FD+VL D PCS +G LR + + + ++N Q+++ A ++ GI+VYS
Sbjct: 325 KNKFDKVLCDVPCSGIGILRRKPEIRYKKFEDIQNIIDVQKQILKNASLYLKKDGILVYS 384
Query: 482 TCTINPGEN 490
TCT+ EN
Sbjct: 385 TCTLGKEEN 393
>gi|408492272|ref|YP_006868641.1| tRNA/small subunit rRNA cytosine -C5 methyltransferase RsmB
[Psychroflexus torquis ATCC 700755]
gi|408469547|gb|AFU69891.1| tRNA/small subunit rRNA cytosine -C5 methyltransferase RsmB
[Psychroflexus torquis ATCC 700755]
Length = 404
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 70/114 (61%), Gaps = 5/114 (4%)
Query: 222 AVDMHNR--IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAI 279
A++++ R +F+ +F +G +Q+ S AHAL + G R++D CA GGKT I
Sbjct: 185 ALELYERADVFKTEAFK---KGFFEVQDASSQKVAHALKLEPGLRVIDACAGAGGKTLHI 241
Query: 280 ASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESND 333
A+L+ ++G+V+A+D NK+ ++++ A G + T ++D+ K +++ ++S D
Sbjct: 242 AALMENKGQVIAMDIYGNKLKELKRRAKRAGAHNLETREIDSTKVIKKLHDSAD 295
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 46/71 (64%), Gaps = 2/71 (2%)
Query: 424 NSFDRVLLDAPCSALGLRPRLFAAEE--TIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYS 481
+S DRVL+DAPC+ LG+ R A+ T + L+ + Q+ + ++V+PGG++VY+
Sbjct: 292 DSADRVLIDAPCTGLGVLRRNPDAKWKLTPEFLKEIKEKQQNLLLDYSKMVKPGGLLVYA 351
Query: 482 TCTINPGENEA 492
TC+I P EN+
Sbjct: 352 TCSILPTENQV 362
>gi|409993041|ref|ZP_11276199.1| 16S rRNA methyltransferase B [Arthrospira platensis str. Paraca]
gi|291566504|dbj|BAI88776.1| ribosomal RNA small subunit methyltransferase B [Arthrospira
platensis NIES-39]
gi|409936102|gb|EKN77608.1| 16S rRNA methyltransferase B [Arthrospira platensis str. Paraca]
Length = 447
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 59/100 (59%), Gaps = 8/100 (8%)
Query: 215 FRASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGG 274
+R S G+ I LP YD +G +Q+ + + + +DPQ GE I+D CAAPGG
Sbjct: 221 WRLSSGVGA-----IRNLPG-YD--QGWWTVQDASAQLVGYIVDPQPGEIIIDACAAPGG 272
Query: 275 KTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCI 314
KTT IA L+ D G+V+A+DRS ++ +++ + L+ I
Sbjct: 273 KTTHIAELMGDNGKVIAIDRSPGRLKPLKQNINRLKLRSI 312
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 424 NSFDRVLLDAPCSALGLRPRLFAAE--ETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYS 481
N DRVLLDAPCS G R + +T +R + Q + + V+PGG++VY+
Sbjct: 327 NMADRVLLDAPCSGGGTLHRRSDSRWRQTPDQIRQLSQLQAELLEMVSHWVKPGGVLVYA 386
Query: 482 TCTINPGENEALCA 495
TCT+ P ENE A
Sbjct: 387 TCTLYPQENEWAIA 400
>gi|220931836|ref|YP_002508744.1| sun protein [Halothermothrix orenii H 168]
gi|219993146|gb|ACL69749.1| sun protein [Halothermothrix orenii H 168]
Length = 440
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 222 AVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIAS 281
V+ N I LP F D G +Q + + L P G R+LDM A PGGKTT +A
Sbjct: 214 VVNNFNTIKDLPLFKD---GGFIVQGPAATLAGFVLGPDPGNRVLDMSAGPGGKTTHLAE 270
Query: 282 LLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
L+ + GE++A+D +K+ I++ +G+ + T K+D
Sbjct: 271 LMNNRGEIIALDIYEHKLKLIEENCNRLGVNIVKTIKVD 309
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 4/76 (5%)
Query: 422 SPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGII 478
S FD VL+DAPC+ LGL +P + T ++ + Q+ + A+ LVR GG +
Sbjct: 315 SQEKFDMVLVDAPCTGLGLVAHKPEI-KWNRTENDVKKLQEIQKSLLHNALSLVRDGGFV 373
Query: 479 VYSTCTINPGENEALC 494
+YSTCT+ ENE +
Sbjct: 374 LYSTCTLTRAENEEVV 389
>gi|427725626|ref|YP_007072903.1| sun protein [Leptolyngbya sp. PCC 7376]
gi|427357346|gb|AFY40069.1| sun protein [Leptolyngbya sp. PCC 7376]
Length = 450
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 47/77 (61%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
EG +Q+ + + +H LDPQ E I+D CAAPGGKTT IA L+ DEG + A D+ ++
Sbjct: 234 EGWWTIQDASAQLVSHLLDPQPREVIIDACAAPGGKTTHIAELMGDEGTIWASDKYKARI 293
Query: 300 MDIQKLAAEMGLKCITT 316
I++ A + L I T
Sbjct: 294 NKIEQNARRLNLSMIRT 310
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 92/219 (42%), Gaps = 21/219 (9%)
Query: 290 VAVDRSHNKVMDIQKLAAEMGLKCITTYKL-DALKAVRRKNESNDEPNMCNSKDNNYITS 348
+ ++ N V +Q L G+KC L +AL+ ++ D P K+ +
Sbjct: 184 IRINPLKNSVEHVQVLLNNAGVKCEVIANLPNALRLTEKRGMIQDLPGY---KEGWWTIQ 240
Query: 349 QTSDSMKLHKEVPS-----IAAEGLNGDKSCK--EKVSNEKGVERTYVSKADTRK---NM 398
S + H P I A G K+ E + +E + + KA K N
Sbjct: 241 DASAQLVSHLLDPQPREVIIDACAAPGGKTTHIAELMGDEGTIWASDKYKARINKIEQNA 300
Query: 399 RRMRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLR 455
RR+ R L G + F + DRVLLD PCS LG RP + ++ +
Sbjct: 301 RRLNLSMIR--TLIGDSREYPQFRQMA-DRVLLDVPCSGLGTLHKRPDI-RWQQNPDKIA 356
Query: 456 NHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEALC 494
++Q + + V+P G +VYSTCTINP EN A+
Sbjct: 357 ELTQFQLELLQAGSKWVKPSGSLVYSTCTINPAENVAIA 395
>gi|363895560|ref|ZP_09322555.1| hypothetical protein HMPREF9629_00837 [Eubacteriaceae bacterium
ACC19a]
gi|361957312|gb|EHL10622.1| hypothetical protein HMPREF9629_00837 [Eubacteriaceae bacterium
ACC19a]
Length = 435
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 60/105 (57%), Gaps = 6/105 (5%)
Query: 223 VDMHNRIFQLPSFYDVLEGEIF------LQNLPSIVTAHALDPQKGERILDMCAAPGGKT 276
+D N I L +F D+ + +++ +Q+ S+ T L P+ E +LD+CAAPGGK+
Sbjct: 213 IDEENMIVSLKNFKDISKNDMYKKGLFSVQDYASMKTVLVLSPKSYEDVLDICAAPGGKS 272
Query: 277 TAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
+A L+ ++G + ++D S K+ +++ +G+ I TY DA
Sbjct: 273 VFMAELMENKGSITSLDISSKKLKLLEEQTKRLGIDIIKTYVNDA 317
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 423 PNSFDRVLLDAPCSALG-LRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYS 481
N FD+VL D PCS +G LR + + + ++N Q+++ A ++ GI+VYS
Sbjct: 325 KNKFDKVLCDVPCSGIGILRRKPEIRYKKFEDIQNIIDVQKQILKNASLYLKKDGILVYS 384
Query: 482 TCTINPGEN 490
TCT+ EN
Sbjct: 385 TCTLGKEEN 393
>gi|223478413|ref|YP_002582574.1| tRNA m5C48-49 methylase [Thermococcus sp. AM4]
gi|214033639|gb|EEB74466.1| tRNA m5C48-49 methylase [Thermococcus sp. AM4]
Length = 311
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 48/73 (65%), Gaps = 2/73 (2%)
Query: 424 NSFDRVLLDAPCSALGL--RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYS 481
N+FDRVLLDAPCS++G+ + F E +++ + Q+R+ + ++PGG +VYS
Sbjct: 175 NTFDRVLLDAPCSSVGMIRKSWRFLREWREKAVVKYMNIQKRLILAGYKALKPGGTLVYS 234
Query: 482 TCTINPGENEALC 494
TCTI+P ENE +
Sbjct: 235 TCTIDPLENEEVV 247
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 44/89 (49%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G IF Q S++ L P+ GE +LDM AAPG KT IA + +EG ++A D + ++
Sbjct: 87 GLIFGQEASSMIPPVVLKPRPGELVLDMAAAPGSKTGQIAQYMENEGCIIANDPNRDRAN 146
Query: 301 DIQKLAAEMGLKCITTYKLDALKAVRRKN 329
+ MG+ D K R +N
Sbjct: 147 VLIANLNRMGVLIARVTTRDGAKFARFEN 175
>gi|383860508|ref|XP_003705731.1| PREDICTED: putative methyltransferase NSUN5-like [Megachile
rotundata]
Length = 563
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 50/83 (60%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
GEI +Q+ S + A LDP+ G +LDMCAAPG KT+ +A+L+ + G + AV+ ++
Sbjct: 210 GEILIQDKASCLAAKILDPKPGSVVLDMCAAPGMKTSHLAALMNNTGTIYAVEFDVSRYA 269
Query: 301 DIQKLAAEMGLKCITTYKLDALK 323
+ K G C+ T + DALK
Sbjct: 270 FLCKQVKATGATCVKTIQKDALK 292
>gi|210622413|ref|ZP_03293145.1| hypothetical protein CLOHIR_01093 [Clostridium hiranonis DSM 13275]
gi|210154229|gb|EEA85235.1| hypothetical protein CLOHIR_01093 [Clostridium hiranonis DSM 13275]
Length = 441
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 72/137 (52%), Gaps = 11/137 (8%)
Query: 196 ERSGLYIGQGTAMMSRAGIFRA--SEGIAVD---MHNRIFQLPSFYDV------LEGEIF 244
ER LY+ T + R + + EGI + + +F + EG
Sbjct: 174 ERPDLYVRTNTLKIDRNSLLKEFEKEGIKASKAMLPEEAIMVENFKGIESSRLYKEGLFT 233
Query: 245 LQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQK 304
+Q++ S++ A + P++G+ +LDMC+APGGK+T +A L+++ G++V+ D +K+ I+
Sbjct: 234 VQDISSMLVAKVVAPKEGDMVLDMCSAPGGKSTHMAELMKNTGKIVSRDVFEHKIKVIKA 293
Query: 305 LAAEMGLKCITTYKLDA 321
A +G+ I + DA
Sbjct: 294 AAKRLGITNIEAEEFDA 310
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 7/73 (9%)
Query: 422 SPNSFDRVLLDAPCSALGL---RPRL-FAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
S FD VL D PCS LG+ +P + + A+E + L K Q ++ + A + V+ G
Sbjct: 317 SIEKFDCVLTDVPCSGLGIIRRKPEIKYKAKEELVDL---PKIQSKILENASKYVKINGT 373
Query: 478 IVYSTCTINPGEN 490
+VYSTCT+ EN
Sbjct: 374 LVYSTCTVQDCEN 386
>gi|448576136|ref|ZP_21642179.1| tRNA and rRNA cytosine-C5-methylase [Haloferax larsenii JCM 13917]
gi|445729816|gb|ELZ81410.1| tRNA and rRNA cytosine-C5-methylase [Haloferax larsenii JCM 13917]
Length = 313
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 65/125 (52%), Gaps = 16/125 (12%)
Query: 209 MSRAGIFRASEGIA---VDMHNRIFQL---------PSFYDVLEGEIFLQNLPSIVTAHA 256
++RA EG+A D H I +L P F+ L G+ + LP+I A
Sbjct: 38 VARAREALDDEGVAYEPTDWHPGILKLEDSSPGTNWPYFHGWLHGQEEVSALPAI----A 93
Query: 257 LDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITT 316
LDPQ GE++ D CAAPG KTT IA+++ D+G +V D + ++ ++ A +G+ +
Sbjct: 94 LDPQPGEKVWDTCAAPGSKTTQIAAMMDDQGVLVGNDNNLGRLSALRHNAERLGVTNLAV 153
Query: 317 YKLDA 321
DA
Sbjct: 154 TNQDA 158
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 426 FDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYST 482
FDRVL+DAPCS G P + E + + + Q+ + +AVQ+ +PGG +VYST
Sbjct: 180 FDRVLVDAPCSCEGTCRKNPDVLD-EWHMGHVESVAGIQKGILRRAVQVTKPGGTVVYST 238
Query: 483 CTINPGENEAL 493
CT P ENEA+
Sbjct: 239 CTFAPEENEAV 249
>gi|148240114|ref|YP_001225501.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
WH 7803]
gi|147848653|emb|CAK24204.1| Ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
WH 7803]
Length = 447
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 60/108 (55%), Gaps = 6/108 (5%)
Query: 209 MSRAGIFRASEGIAVDMHNR--IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERIL 266
M A I +G+ V +H+ + Q P + EG +Q+ + A L + G+R+L
Sbjct: 214 MPTAAIPGCPDGLQV-LHSAGDLRQWPGYE---EGHWCVQDRAAQWVAPLLAVEPGQRVL 269
Query: 267 DMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCI 314
D CAAPGGK T +A L+ D+GEV AVDRS ++ + AA +G CI
Sbjct: 270 DACAAPGGKATHLAELMGDQGEVWAVDRSGGRLQRVAANAARLGCGCI 317
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 425 SFDRVLLDAPCSALGLRPRLFAAEETIQ--SLRNHGKYQRRMFDQAVQLVRPGGIIVYST 482
SFDR+LLDAPCS LG R A I S+ + K Q + D V L++PGG IVY+T
Sbjct: 337 SFDRILLDAPCSGLGTLARHPDARWRISEASIADLVKLQAGLLDALVPLLKPGGRIVYAT 396
Query: 483 CTINPGEN 490
CT++P EN
Sbjct: 397 CTVHPAEN 404
>gi|116747600|ref|YP_844287.1| sun protein [Syntrophobacter fumaroxidans MPOB]
gi|116696664|gb|ABK15852.1| sun protein [Syntrophobacter fumaroxidans MPOB]
Length = 449
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 55/107 (51%), Gaps = 10/107 (9%)
Query: 393 DTRKNMRRMRNGPGRNQCLGGRAENSKGFSPNS---FDRVLLDAPCSALGLRPRL--FAA 447
+ RKN RR + + R + FSP + FDRVLLDAPCS G R
Sbjct: 295 ELRKNARRQGL-----RIIKPRTADLFEFSPGTEDLFDRVLLDAPCSGFGTLRRNPDIKW 349
Query: 448 EETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEALC 494
++ R G+ Q+ M D A + V+PGG +VYS CT+ EN+A+
Sbjct: 350 RRHLKDPRRFGRIQKEMLDHAARFVKPGGALVYSACTLFQEENDAVA 396
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 51/84 (60%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G + +Q+ S + + + P+ GER+LD+CA GGK+T + L+ D GEVVAVD S K+
Sbjct: 234 DGLVQVQDEASQIVSTLVAPRAGERVLDLCAGFGGKSTHLGILMGDRGEVVAVDNSAWKL 293
Query: 300 MDIQKLAAEMGLKCITTYKLDALK 323
+++K A GL+ I D +
Sbjct: 294 EELRKNARRQGLRIIKPRTADLFE 317
>gi|409095857|ref|ZP_11215881.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus zilligii AN1]
Length = 315
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%), Gaps = 2/73 (2%)
Query: 424 NSFDRVLLDAPCSALGL--RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYS 481
N+FDRVLLDAPCS++GL + F +++ + + Q+++ + ++PGG +VYS
Sbjct: 175 NTFDRVLLDAPCSSVGLIRKKWRFLEAWSLKGVVKYMNIQKKLILAGYKALKPGGTLVYS 234
Query: 482 TCTINPGENEALC 494
TCTI+P ENE +
Sbjct: 235 TCTIDPLENEEVV 247
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 34/53 (64%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVD 293
G IF Q S++ ALDP+ GE +LDM AAPG KT IA + +EG +VA D
Sbjct: 87 GLIFGQEASSMIPPVALDPKPGELVLDMAAAPGSKTGQIAQYMENEGCIVAND 139
>gi|332981565|ref|YP_004463006.1| sun protein [Mahella australiensis 50-1 BON]
gi|332699243|gb|AEE96184.1| sun protein [Mahella australiensis 50-1 BON]
Length = 447
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 64/108 (59%), Gaps = 4/108 (3%)
Query: 207 AMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERIL 266
++M G++ E + ++ + + LP + D G +Q+ S++ AH +DP+ G+ I+
Sbjct: 201 SIMYSCGVY-LPEALNIEQNVDVESLPGYDD---GLFAVQDEASMMVAHVVDPRPGQIII 256
Query: 267 DMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCI 314
D C+APGGK +A ++D+G +++VD +++ I+ A +G+ C+
Sbjct: 257 DACSAPGGKAVHMAQFMKDQGRILSVDVYPHRIELIKAQCARLGVNCV 304
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 8/72 (11%)
Query: 427 DRVLLDAPCSALGL---RP--RLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYS 481
D VL+DAPCSALG+ +P + E+ I L + QR++ D V+P G ++YS
Sbjct: 323 DAVLIDAPCSALGIIRHKPDIKWRRIEKDIGELL---QIQRQILDTCSLYVKPRGALIYS 379
Query: 482 TCTINPGENEAL 493
TCTINP EN+ +
Sbjct: 380 TCTINPDENQNM 391
>gi|288931958|ref|YP_003436018.1| RNA methylase, NOL1/NOP2/sun family [Ferroglobus placidus DSM
10642]
gi|288894206|gb|ADC65743.1| RNA methylase, NOL1/NOP2/sun family [Ferroglobus placidus DSM
10642]
Length = 446
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 59/101 (58%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G+ +Q S + + LDP+ GE ++D+CAAPGGKT +A L+++ G + A D ++
Sbjct: 233 KGKFVIQEEASALASILLDPKPGEVVVDLCAAPGGKTLHMAELMKNRGVIHAFDIDELRL 292
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNS 340
+++L G++ + YK DA KA + ES + M ++
Sbjct: 293 KRMEELIERCGIRIVKIYKKDARKATKILGESVADKVMLDA 333
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 12/75 (16%)
Query: 427 DRVLLDAPCSALG-------LRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIV 479
D+V+LDAPC++ G LR R+ EE I+ L + Q + + AV L++PGG ++
Sbjct: 327 DKVMLDAPCTSDGTLMKNPELRWRI--REEKIEEL---AELQYELLNVAVDLLKPGGRVL 381
Query: 480 YSTCTINPGENEALC 494
Y TC++ ENE +
Sbjct: 382 YCTCSMFKEENEGVV 396
>gi|258645366|ref|ZP_05732835.1| ribosomal RNA small subunit methyltransferase B [Dialister invisus
DSM 15470]
gi|260402715|gb|EEW96262.1| ribosomal RNA small subunit methyltransferase B [Dialister invisus
DSM 15470]
Length = 454
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 55/94 (58%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G I++Q S++ A L P G+ +LDMCAAPG KTT IA+L+ + G + A D +KV
Sbjct: 241 GLIYIQTASSMIPAKVLGPDAGDHVLDMCAAPGSKTTHIAALMGNRGSIDAWDVYPHKVK 300
Query: 301 DIQKLAAEMGLKCITTYKLDALKAVRRKNESNDE 334
I+ A +G+ I T D++K + E+ D+
Sbjct: 301 LIKDNAKRLGISIIHTEVRDSVKPLPFLYETYDK 334
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 12/80 (15%)
Query: 421 FSPNSFDRVLLDAPCSALG-------LRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVR 473
F ++D+VLLDAPCS LG LR R ++ ++ Q+++ +QA + +
Sbjct: 327 FLYETYDKVLLDAPCSGLGVLGHKVELRWRRKESDLSV-----FPPLQKQLIEQAAKYTK 381
Query: 474 PGGIIVYSTCTINPGENEAL 493
GG++VYSTCT+NP ENE +
Sbjct: 382 TGGVLVYSTCTLNPDENEHI 401
>gi|399574398|ref|ZP_10768157.1| nol1/nop2/sun family RNA methylase [Halogranum salarium B-1]
gi|399240230|gb|EJN61155.1| nol1/nop2/sun family RNA methylase [Halogranum salarium B-1]
Length = 311
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 10/108 (9%)
Query: 214 IFRASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPG 273
I R +EG A P F+ L G+ + LP+I ALDPQ GE + D CAAPG
Sbjct: 61 ILRLTEGKAGTT------WPYFHGWLHGQEEVSALPAI----ALDPQPGETVWDTCAAPG 110
Query: 274 GKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
K+T +++L+ DEG VVA D S ++ ++ A +G+ + DA
Sbjct: 111 SKSTQLSALMDDEGFVVANDNSLGRLSALRHNAERLGVTNVAVTNKDA 158
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 419 KGFSPNSFDRVLLDAPCSALGL-RPRLFAAEE-TIQSLRNHGKYQRRMFDQAVQLVRPGG 476
K F + FDR L+DAPCS G R A E+ T+ + + Q+ + +A+Q RPGG
Sbjct: 164 KPFDFDQFDRTLVDAPCSCEGTCRKNPDALEKWTMDHVHSVVGIQKGIIRRAIQATRPGG 223
Query: 477 IIVYSTCTINPGENEAL 493
+VYSTCT P ENEA+
Sbjct: 224 TVVYSTCTFAPEENEAI 240
>gi|383625298|ref|ZP_09949704.1| RNA methylase, NOL1/NOP2/sun family protein [Halobiforma lacisalsi
AJ5]
gi|448700278|ref|ZP_21699386.1| RNA methylase, NOL1/NOP2/sun family protein [Halobiforma lacisalsi
AJ5]
gi|445779818|gb|EMA30733.1| RNA methylase, NOL1/NOP2/sun family protein [Halobiforma lacisalsi
AJ5]
Length = 302
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 64/129 (49%), Gaps = 17/129 (13%)
Query: 202 IGQGTAMMSRAGIFRASEGIAVDMHNRIFQL---------PSFYDVLEGEIFLQNLPSIV 252
+ + TA + G+ E D + R+ +L SF+ G+ + +P +V
Sbjct: 38 VERATATLEEEGV----EFDQADWNPRVLRLETDSPGATWASFHGFTHGQEEVSAVPPVV 93
Query: 253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK 312
LDPQ GER+ D CAAPGGK T IA+L+ DEG VVA D + ++ ++ A +G
Sbjct: 94 ----LDPQPGERVWDACAAPGGKATQIAALMDDEGTVVANDSNLGRISALRFNAERLGAT 149
Query: 313 CITTYKLDA 321
+ DA
Sbjct: 150 NLAVTNADA 158
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 421 FSPNSFDRVLLDAPCSALG-LRPRLFAAEETIQS-LRNHGKYQRRMFDQAVQLVRPGGII 478
FS + FDR L+DAPCS G +R A E + + + Q+ + +AVQ GG +
Sbjct: 166 FSFDEFDRALVDAPCSCEGTIRKNPDALENWSEDHIASVSGIQKGILRRAVQATTAGGTV 225
Query: 479 VYSTCTINPGENEAL 493
VYSTCT P ENEA+
Sbjct: 226 VYSTCTFAPEENEAV 240
>gi|145590277|ref|YP_001152279.1| PUA domain-containing protein [Pyrobaculum arsenaticum DSM 13514]
gi|145282045|gb|ABP49627.1| PUA domain containing protein [Pyrobaculum arsenaticum DSM 13514]
Length = 377
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 117/285 (41%), Gaps = 68/285 (23%)
Query: 33 SRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTIS 92
S + LT P Y IRVNT K T +++I++L +++G IS
Sbjct: 27 SMLRSVLTPPQRY-YIRVNTTKITPNELIKRL----------------NLRG------IS 63
Query: 93 ESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSS 152
+ E V+ GP I K V+V +K AE+++ GA +Y P ++ +
Sbjct: 64 AYKDEVFEDAVWFPVEGPFKIPSA------KKIVVVDKKAAESIMLGADLYGPAIIK-TD 116
Query: 153 HVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRA 212
V+ G+ V + +G+ + G A+M+
Sbjct: 117 PVKSGEEVNI--------------------------------VSDNGVLVAYGKAVMNSD 144
Query: 213 GIFRASEGIAVDMHNRIFQLPSFYDV---LEGEIFLQNLPSIVTAHALDPQKGERILDMC 269
R+ G+ V + +++ P ++ EG + Q+LP+I H ++D+
Sbjct: 145 EALRSRRGLFVQVEKSLYKAPKLRNLPEYAEGLFYSQSLPAIAVGHIARKFAQRSVVDLN 204
Query: 270 AAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCI 314
AAPGGK T +A V+AVDRS K+ ++ +GL +
Sbjct: 205 AAPGGKATHLAQY---GIHVIAVDRSSPKISKLKYEVERLGLNSV 246
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 427 DRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTIN 486
D L+D PC+ LG+RP+++ + T + + KYQ + A++L ++YSTCT
Sbjct: 266 DVALVDPPCTDLGVRPKIY-QKVTYSTAKTLSKYQVQFLKTALKL---ADYVIYSTCTTT 321
Query: 487 PGENE 491
ENE
Sbjct: 322 AIENE 326
>gi|448311762|ref|ZP_21501516.1| RNA methylase, NOL1/NOP2/sun family protein [Natronolimnobius
innermongolicus JCM 12255]
gi|445603793|gb|ELY57750.1| RNA methylase, NOL1/NOP2/sun family protein [Natronolimnobius
innermongolicus JCM 12255]
Length = 302
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Query: 234 SFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVD 293
SF+ G+ + +P IV LDPQ GER+ D CAAPGGK T IA+L+ DEG VVA D
Sbjct: 75 SFHGFTHGQEEVSAVPPIV----LDPQSGERVWDCCAAPGGKATQIAALMDDEGTVVAND 130
Query: 294 RSHNKVMDIQKLAAEMGLKCITTYKLDA 321
+ ++ ++ A +G + DA
Sbjct: 131 NNLGRISALRFNAERLGATSLAVTNDDA 158
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 421 FSPNSFDRVLLDAPCSALG-LRPRLFAAEETIQS-LRNHGKYQRRMFDQAVQLVRPGGII 478
FS + FDR L+DAPCS G +R A + + + + Q+ + +A+Q R GG +
Sbjct: 166 FSFDEFDRALVDAPCSCEGTIRKNPDALDNWSEGHISSVAGIQKGILRRAIQATREGGTV 225
Query: 479 VYSTCTINPGENEAL 493
VYSTCT P ENEA+
Sbjct: 226 VYSTCTFAPEENEAV 240
>gi|410658818|ref|YP_006911189.1| Ribosomal RNA small subunit methyltransferase B [Dehalobacter sp.
DCA]
gi|410661804|ref|YP_006914175.1| Ribosomal RNA small subunit methyltransferase B [Dehalobacter sp.
CF]
gi|409021173|gb|AFV03204.1| Ribosomal RNA small subunit methyltransferase B [Dehalobacter sp.
DCA]
gi|409024160|gb|AFV06190.1| Ribosomal RNA small subunit methyltransferase B [Dehalobacter sp.
CF]
Length = 471
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 56/90 (62%)
Query: 232 LPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVA 291
L ++ G +Q+ S + AH L ++G+ +LD+C+APGGKTT +A L++++G +VA
Sbjct: 243 LDQLWEFQNGYFAVQDQSSQLAAHLLGAREGDSVLDVCSAPGGKTTHLAQLMKNKGTIVA 302
Query: 292 VDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
VD K+ I++ A +G+ I T + DA
Sbjct: 303 VDMYPQKLDLIKESAERLGITMIKTVEGDA 332
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 40/70 (57%), Gaps = 8/70 (11%)
Query: 426 FDRVLLDAPCSALG-LRPR----LFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
FDRVL+DAPCS LG LR R E+ I L + Q + +A VR GG +VY
Sbjct: 342 FDRVLVDAPCSGLGVLRKRADLRWQKREDEISKL---PELQLAILLKAADHVREGGELVY 398
Query: 481 STCTINPGEN 490
STCT+ P EN
Sbjct: 399 STCTMEPEEN 408
>gi|90578629|ref|ZP_01234439.1| putative sun/nucleolar protein family protein [Photobacterium
angustum S14]
gi|90439462|gb|EAS64643.1| putative sun/nucleolar protein family protein [Photobacterium
angustum S14]
Length = 476
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 421 FSPNSFDRVLLDAPCSALGL--RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGII 478
++P SFD +LLDAPCS G + A ++ S+ + QR + A Q ++ GG++
Sbjct: 182 WAPESFDSILLDAPCSGEGAIRKDEDAMANWSLASIDEIAEVQRNLIVSAFQALKTGGVM 241
Query: 479 VYSTCTINPGENEALC 494
VYSTCT+N EN+A+C
Sbjct: 242 VYSTCTLNQSENQAVC 257
>gi|18977038|ref|NP_578395.1| nol1-nop2-sun family nucleolar protein IV [Pyrococcus furiosus DSM
3638]
gi|397651170|ref|YP_006491751.1| nol1-nop2-sun family nucleolar protein IV [Pyrococcus furiosus
COM1]
gi|18892673|gb|AAL80790.1| putative nucleolar protein IV (nol1-nop2-sun family) [Pyrococcus
furiosus DSM 3638]
gi|393188761|gb|AFN03459.1| nol1-nop2-sun family nucleolar protein IV [Pyrococcus furiosus
COM1]
Length = 452
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 55/95 (57%)
Query: 230 FQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEV 289
+ S Y +G+I +Q S V + LDP+ GE ++D+ AAPGGKTT +A L+++ G++
Sbjct: 229 YDFDSSYLFRKGKIIVQEEASAVASVILDPKPGEVVVDLAAAPGGKTTHMAELMKNRGKI 288
Query: 290 VAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324
A D ++ ++ + MG+K + DA KA
Sbjct: 289 FAFDIDKARMKRLKDFVSRMGIKIVKPIVKDARKA 323
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 12/72 (16%)
Query: 427 DRVLLDAPCSALG-------LRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIV 479
DRV+LDAPC++ G LR RL E+ I+ + + QR + + A +LV+PGG ++
Sbjct: 333 DRVMLDAPCTSSGTIGKNPELRWRL--REQKIEEM---AQLQRELLESAAKLVKPGGRLL 387
Query: 480 YSTCTINPGENE 491
Y+TC+I E+E
Sbjct: 388 YTTCSIFIEEDE 399
>gi|332796458|ref|YP_004457958.1| RNA methylase [Acidianus hospitalis W1]
gi|332694193|gb|AEE93660.1| RNA methylase, NOL1/NOP2/sun family [Acidianus hospitalis W1]
Length = 335
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 54/85 (63%)
Query: 237 DVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296
+ L+G ++Q L S+V A+ L+P + +LDM AAPGGKTT ++ ++ +EG +VAV++S
Sbjct: 112 EYLQGYYYIQGLASMVPAYVLNPSSSDTVLDMAAAPGGKTTQLSQIMNNEGLIVAVEKSR 171
Query: 297 NKVMDIQKLAAEMGLKCITTYKLDA 321
+V + + +G++ + + D
Sbjct: 172 LRVTSLLSNISRLGVRNVLLLRSDV 196
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Query: 425 SFDRVLLDAPCSALGLRP--RLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYST 482
SFD++LLDAPCS GL P + + ++ L+ Q ++ A +L++ GG +VYST
Sbjct: 205 SFDKILLDAPCSGEGLIPEDQSRKTKTSLDELKRFSFTQLQLIYTAYKLLKKGGELVYST 264
Query: 483 CTINPGENEAL 493
C+I P E+E +
Sbjct: 265 CSIAPEEDEMI 275
>gi|319649620|ref|ZP_08003776.1| sun protein [Bacillus sp. 2_A_57_CT2]
gi|317398782|gb|EFV79464.1| sun protein [Bacillus sp. 2_A_57_CT2]
Length = 451
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 53/85 (62%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G I +Q+ S++ A+AL E+ILD CAAPGGKTT IA +++ G+V+++D +KV
Sbjct: 233 DGLITIQDESSMLAAYALGGNPNEKILDACAAPGGKTTHIAEKMQNTGQVISLDLHEHKV 292
Query: 300 MDIQKLAAEMGLKCITTYKLDALKA 324
I A +GL I T LD+ K
Sbjct: 293 KLINDNADRLGLSNIKTNALDSRKV 317
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
Query: 421 FSPNSFDRVLLDAPCSALGLRPRLFAAEETIQS--LRNHGKYQRRMFDQAVQLVRPGGII 478
+ SFDR+L+DAPCS LG+ R + T + L + K QR + D L++ GGI+
Sbjct: 321 YEKESFDRILVDAPCSGLGVMRRKPDMKYTKKEDDLYHLHKIQRNLLDAVSPLLKKGGIL 380
Query: 479 VYSTCTINPGENE 491
VYSTCT++ EN+
Sbjct: 381 VYSTCTVDKEENQ 393
>gi|334128608|ref|ZP_08502491.1| RNA methyltransferase Sun [Centipeda periodontii DSM 2778]
gi|333386699|gb|EGK57909.1| RNA methyltransferase Sun [Centipeda periodontii DSM 2778]
Length = 448
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 60/111 (54%), Gaps = 4/111 (3%)
Query: 211 RAGIFRASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCA 270
RA ++ A EG+ +D H + +L G +Q+ S++ AH L P+ G ++D CA
Sbjct: 212 RASLY-APEGVVLDAHGALDELTPLR---MGLAQVQDESSMLVAHVLAPEPGMTVIDACA 267
Query: 271 APGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
APGGKTT IA + + G ++A D K+ I++ A +G+ + DA
Sbjct: 268 APGGKTTHIAQRMENRGRILAFDIYEEKIRRIERNAQRLGISIMEAQMCDA 318
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Query: 427 DRVLLDAPCSALGLRPRLFAA--EETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCT 484
DRVL+DAPCS LG+ R A +++ + ++ QR + A + V+ GGI+VYSTCT
Sbjct: 330 DRVLVDAPCSGLGVLRRKPDARWKKSPEDVKTLPPLQRAILASAAEAVKKGGILVYSTCT 389
Query: 485 INPGENEALCA 495
+ EN A+ A
Sbjct: 390 MEECENAAIVA 400
>gi|313891936|ref|ZP_07825537.1| ribosomal RNA small subunit methyltransferase B [Dialister
microaerophilus UPII 345-E]
gi|313119579|gb|EFR42770.1| ribosomal RNA small subunit methyltransferase B [Dialister
microaerophilus UPII 345-E]
Length = 448
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 51/81 (62%)
Query: 254 AHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC 313
A+ALDP+ E++LDMCAAPG KTT IA L+ ++G + A D +K+ I++ +G+K
Sbjct: 252 AYALDPKPYEKVLDMCAAPGSKTTQIAQLMDNKGSIDAWDLYPHKIKLIEENINRLGVKI 311
Query: 314 ITTYKLDALKAVRRKNESNDE 334
+T DA K + NE D+
Sbjct: 312 VTPKLQDATKLLPTLNEQYDK 332
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 45/71 (63%), Gaps = 8/71 (11%)
Query: 426 FDRVLLDAPCSALGL---RP--RLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
+D+VLLDAPCS LG+ +P R EETI+SL + Q+ + A V+ GG +VY
Sbjct: 330 YDKVLLDAPCSGLGVLGHKPELRWRRTEETIESLIST---QKDLLKCASIYVKKGGTLVY 386
Query: 481 STCTINPGENE 491
STCT+N ENE
Sbjct: 387 STCTLNINENE 397
>gi|404371535|ref|ZP_10976839.1| NOL1/NOP2/sun family putative RNA methylase [Clostridium sp.
7_2_43FAA]
gi|226912338|gb|EEH97539.1| NOL1/NOP2/sun family putative RNA methylase [Clostridium sp.
7_2_43FAA]
Length = 319
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 426 FDRVLLDAPCSALG---LRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYST 482
FDRVLLD PCS G L+ + + K Q+R+FD A ++PGGI+VYST
Sbjct: 185 FDRVLLDVPCSGEGIITLKSSKVYKGWNEKKVALCSKLQKRLFDSAYNALKPGGIMVYST 244
Query: 483 CTINPGENE 491
CT+NP ENE
Sbjct: 245 CTLNPFENE 253
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 37/53 (69%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVD 293
G+I+LQNL S++ LD ++ +LDMCAAPGGK+ +A L +++ ++A D
Sbjct: 94 GKIYLQNLSSMLPPLFLDLKEDLVVLDMCAAPGGKSLYMADLTKNKATILAND 146
>gi|119357565|ref|YP_912209.1| sun protein [Chlorobium phaeobacteroides DSM 266]
gi|119354914|gb|ABL65785.1| sun protein [Chlorobium phaeobacteroides DSM 266]
Length = 444
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 50/81 (61%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G++ +QN V L+P R+LD+CAAPGGK T +A L++++G + AVDRS K+
Sbjct: 229 GKLTVQNPTQGVACLLLNPVPESRVLDLCAAPGGKATFMAELMQNKGSITAVDRSSEKLE 288
Query: 301 DIQKLAAEMGLKCITTYKLDA 321
++ A E+G+ I T DA
Sbjct: 289 KTRQHAVELGITIIKTICADA 309
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 13/83 (15%)
Query: 417 NSKGFSPNSFDR-VLLDAPCSALG-------LRPRLFAAEETIQSLRNHGKYQRRMFDQA 468
+++ F P + VLLDAPC+ G LR +L +++ L+ QR + D A
Sbjct: 308 DARSFVPEETPQAVLLDAPCTGTGVLQKRAELRWKL-----SMEMLQELVTLQRELLDHA 362
Query: 469 VQLVRPGGIIVYSTCTINPGENE 491
++ GI++Y+TC+I P ENE
Sbjct: 363 ASILPVNGILLYATCSIEPEENE 385
>gi|345304018|ref|YP_004825920.1| RNA methylase, NOL1/NOP2/sun family [Rhodothermus marinus
SG0.5JP17-172]
gi|345113251|gb|AEN74083.1| RNA methylase, NOL1/NOP2/sun family [Rhodothermus marinus
SG0.5JP17-172]
Length = 321
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 49/77 (63%), Gaps = 5/77 (6%)
Query: 421 FSPNSFDRVLLDAPCSALGL----RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGG 476
+ P FD VL+DAPCS+ G P FA +++ +R + Q R+ AVQ +RPGG
Sbjct: 175 YRPEFFDYVLVDAPCSSEGRFHLSDPDTFAYW-SLRKIREMARKQYRLLVSAVQSLRPGG 233
Query: 477 IIVYSTCTINPGENEAL 493
++VY+TCT+ P ENEA+
Sbjct: 234 VLVYATCTMAPEENEAV 250
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 48/94 (51%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
E I++Q+L S++ L P+ R+LD+CAAPG KT +A L++ GE+ AV+ +
Sbjct: 88 ERWIYVQDLASMLPPLVLAPEPDARVLDLCAAPGSKTLQLACLMQGRGEIAAVEVVRPRF 147
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRRKNESND 333
++ G + Y D + R + E D
Sbjct: 148 YRLKANVQAYGAPNVRLYLQDGTRVGRYRPEFFD 181
>gi|281203041|gb|EFA77242.1| NOL1/NOP2/Sun family protein [Polysphondylium pallidum PN500]
Length = 403
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 50/84 (59%)
Query: 237 DVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296
+ L G Q+ S + AL+PQ GER+LDMCA+PGGKTT IASL+++ G +VA D +
Sbjct: 86 EYLAGHYIQQSASSFLPVLALEPQPGERVLDMCASPGGKTTYIASLMKNTGVLVANDINK 145
Query: 297 NKVMDIQKLAAEMGLKCITTYKLD 320
++ + +G++ LD
Sbjct: 146 ERMRSLVANIHRLGVRNTVVSNLD 169
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 55/122 (45%), Gaps = 36/122 (29%)
Query: 383 GVERTYVSKADTRKNMRRMRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGLRP 442
GV T VS D R+ RM GG FDRVL+DAPC LG+
Sbjct: 159 GVRNTVVSNLDGREYPSRM----------GG------------FDRVLVDAPCVGLGV-- 194
Query: 443 RLFAAEETIQSLRNH------GKYQRRMFDQAVQLV----RPGGIIVYSTCTINPGENEA 492
A ++ I+ ++ Q+ + A+ V + GGIIVYSTC++ ENEA
Sbjct: 195 --IAKDQQIKMTKSERDVTKCTHIQKELILHAIDSVDANSKTGGIIVYSTCSLTVEENEA 252
Query: 493 LC 494
+
Sbjct: 253 VV 254
>gi|440804457|gb|ELR25334.1| PUA domain containing protein [Acanthamoeba castellanii str. Neff]
Length = 920
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 60/117 (51%), Gaps = 18/117 (15%)
Query: 109 GPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQ 168
GPH EP PP +V R C EAVLRGA +Y GV+A + + KGD+V+V V +
Sbjct: 259 GPHK----REPKYPP--AVVDRSCGEAVLRGAHIYAAGVIAAAGDLHKGDMVSVFVDDGK 312
Query: 169 PTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDM 225
GG +TRG + + + L++G G M R +F + G+A++M
Sbjct: 313 ----GGKTGKLTRGEFVHDAG--------NWLFVGNGRMTMGRGQMFSGTSGVAIEM 357
>gi|407778339|ref|ZP_11125604.1| hypothetical protein NA2_10203 [Nitratireductor pacificus pht-3B]
gi|407300020|gb|EKF19147.1| hypothetical protein NA2_10203 [Nitratireductor pacificus pht-3B]
Length = 459
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 47/83 (56%), Gaps = 9/83 (10%)
Query: 419 KGFSPNS-FDRVLLDAPCSALGLRPR-----LFAAEETIQSLRNHGKYQRRMFDQAVQLV 472
+ F P + FD VLLDAPCS+ G R A E I L QR + D AV LV
Sbjct: 319 RKFVPEAPFDAVLLDAPCSSTGTVRRHPDVPWTKAPEDIDKL---AALQRALLDHAVTLV 375
Query: 473 RPGGIIVYSTCTINPGENEALCA 495
RPGG +V+S C+++P E EA+ A
Sbjct: 376 RPGGAVVFSNCSLDPAEGEAMLA 398
Score = 41.6 bits (96), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 6/68 (8%)
Query: 232 LPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVA 291
+P F EG ++Q+ + + A L G+R+ D+CAAPGGKT A L+ +V A
Sbjct: 236 MPGFA---EGAWWVQDAAASLPARLLGDVAGKRVADLCAAPGGKT---AQLVHAGADVTA 289
Query: 292 VDRSHNKV 299
VD S +++
Sbjct: 290 VDLSKSRL 297
>gi|121533700|ref|ZP_01665527.1| sun protein [Thermosinus carboxydivorans Nor1]
gi|121307691|gb|EAX48606.1| sun protein [Thermosinus carboxydivorans Nor1]
Length = 442
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 62/107 (57%), Gaps = 3/107 (2%)
Query: 217 ASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKT 276
A EGI + + +L S G +Q+ S+ AH L P+ G+ ++D C APGGK+
Sbjct: 211 APEGILCHEYPALSKLASLR---AGLFQVQDESSMTVAHVLSPRPGDFVIDACGAPGGKS 267
Query: 277 TAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323
T IA+L+ ++G+V+A D +K+ ++ A +G+ + T LDA+K
Sbjct: 268 THIAALMGNKGKVLATDIYEHKLALMRDNAVRLGISILETQLLDAVK 314
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAE--ETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
P DRVL+DAPCS LG+ R + + Q L + + Q + A + ++PGGI+VY
Sbjct: 320 PGQADRVLVDAPCSGLGVLRRKPDSRWRKNEQMLTDLPRLQLAILASAAKCLKPGGILVY 379
Query: 481 STCTINPGEN 490
STCT P EN
Sbjct: 380 STCTTEPEEN 389
>gi|257066168|ref|YP_003152424.1| Fmu (Sun) domain-containing protein [Anaerococcus prevotii DSM
20548]
gi|256798048|gb|ACV28703.1| Fmu (Sun) domain protein [Anaerococcus prevotii DSM 20548]
Length = 430
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 48/82 (58%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
EG +Q S+ T LDPQK +ILD+CAAPG KT+ +A R+ G+++A D S NK+
Sbjct: 224 EGLFTIQQEASMKTVEVLDPQKDSKILDLCAAPGTKTSYLAEYTRNSGKIIANDISKNKL 283
Query: 300 MDIQKLAAEMGLKCITTYKLDA 321
I++ +GL I DA
Sbjct: 284 NLIRENIERLGLSNIELDSFDA 305
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 426 FDRVLLDAPCSALGLRPRL--FAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTC 483
FD VL+DAPCS LG+ R TI ++ + QR++ A++ ++P GI+VYSTC
Sbjct: 316 FDYVLVDAPCSGLGVMARKPEIRYNRTISDIKVLAELQRKILANAIRYLKPAGILVYSTC 375
Query: 484 TINPGEN 490
T+ EN
Sbjct: 376 TLGNIEN 382
>gi|124804351|ref|XP_001347976.1| RNA methyltransferase, putative [Plasmodium falciparum 3D7]
gi|23496230|gb|AAN35889.1| RNA methyltransferase, putative [Plasmodium falciparum 3D7]
Length = 634
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 47/69 (68%), Gaps = 1/69 (1%)
Query: 426 FDRVLLDAPCSALGL-RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCT 484
FD++LLDAPCS G+ A +TI+ +R+ + Q+ + + A+ L++ GGI+VYSTC+
Sbjct: 375 FDKILLDAPCSGTGVVNKNKTARRKTIKEIRDLAQKQKILLNNAINLLKNGGIVVYSTCS 434
Query: 485 INPGENEAL 493
I+ ENE +
Sbjct: 435 ISVEENEQV 443
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 51/90 (56%)
Query: 234 SFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVD 293
S + L G +Q+ S++ L+ Q+ + +LDMCAAPGGK T + +L ++ G V A D
Sbjct: 277 SLNEYLYGYYIIQSSSSLMPVLELNIQEDDMVLDMCAAPGGKCTFMCTLKKNRGVVYAND 336
Query: 294 RSHNKVMDIQKLAAEMGLKCITTYKLDALK 323
+ + I+ A+ MG+ + +DALK
Sbjct: 337 INKLRCKAIEAHASRMGINNLIVTCIDALK 366
>gi|322371799|ref|ZP_08046342.1| tRNA and rRNA cytosine-C5-methylase [Haladaptatus paucihalophilus
DX253]
gi|320548684|gb|EFW90355.1| tRNA and rRNA cytosine-C5-methylase [Haladaptatus paucihalophilus
DX253]
Length = 301
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 52/90 (57%), Gaps = 4/90 (4%)
Query: 232 LPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVA 291
PSF+ G+ + ++P+ V LDP+ GER+LD CAAPG KTT +A+L+ D G VVA
Sbjct: 72 WPSFHGWTHGQEEVSSIPAFV----LDPEPGERVLDSCAAPGSKTTQLAALMDDTGLVVA 127
Query: 292 VDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
D + ++ ++ +G+ C DA
Sbjct: 128 NDSNLGRLSALRFNTERLGVTCAAVTNQDA 157
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 419 KGFSPNSFDRVLLDAPCSALG-LRPRLFAAEET-IQSLRNHGKYQRRMFDQAVQLVRPGG 476
K F ++FD L+D PCS G +R A ++ + + Q+ + +AVQ R GG
Sbjct: 163 KPFGLSAFDAALVDVPCSCEGTVRKNPTALDDWGLDHIEGVAGVQKGILRRAVQATREGG 222
Query: 477 IIVYSTCTINPGENEAL 493
+VYSTCT P ENEA+
Sbjct: 223 TVVYSTCTFAPEENEAV 239
>gi|288553113|ref|YP_003425048.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus pseudofirmus
OF4]
gi|288544273|gb|ADC48156.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus pseudofirmus
OF4]
Length = 448
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 58/106 (54%), Gaps = 3/106 (2%)
Query: 218 SEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTT 277
SE + ++F+ +F +G + Q+ S++ AL GER+ D+CAAPGGKTT
Sbjct: 211 SEDALIIKSGQVFESKAFK---QGYVTAQDESSMLVGRALGANSGERVADVCAAPGGKTT 267
Query: 278 AIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323
IA + +EG V+A D +KV I+ AA + L I T DA K
Sbjct: 268 HIAEQMNNEGSVLAFDLHDHKVKLIRGQAARLDLSIIDTQAADARK 313
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 50/79 (63%), Gaps = 8/79 (10%)
Query: 418 SKGFSPNSFDRVLLDAPCSALGL---RPRLFAA--EETIQSLRNHGKYQRRMFDQAVQLV 472
++ F P SFDR+L+DAPCS G+ +P + A E I+++++ Q+ + + L+
Sbjct: 315 AEKFEPESFDRILVDAPCSGFGVIKRKPDIKWAKKEADIKAIQS---IQQAILNAVAPLL 371
Query: 473 RPGGIIVYSTCTINPGENE 491
+ GG +VYSTCT++ ENE
Sbjct: 372 KKGGTLVYSTCTVDKDENE 390
>gi|15644260|ref|NP_229312.1| sun protein [Thermotoga maritima MSB8]
gi|418045570|ref|ZP_12683665.1| sun protein [Thermotoga maritima MSB8]
gi|4982078|gb|AAD36579.1|AE001799_11 sun protein [Thermotoga maritima MSB8]
gi|351676455|gb|EHA59608.1| sun protein [Thermotoga maritima MSB8]
Length = 431
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 42/60 (70%)
Query: 262 GERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
G R+LD CAAPGGKTTAIA L++D+G+++AVD S K+ ++K A + L I T DA
Sbjct: 238 GLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIETKIADA 297
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 44/79 (55%), Gaps = 4/79 (5%)
Query: 415 AENSKGFSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQL 471
AE + ++FDRVL+DAPC++LG P + + + Q RM QA QL
Sbjct: 297 AERLTEYVQDTFDRVLVDAPCTSLGTARNHPEVLRRVNK-EDFEKFSEIQLRMVQQAWQL 355
Query: 472 VRPGGIIVYSTCTINPGEN 490
+ GGI++YSTCT+ EN
Sbjct: 356 LEKGGILLYSTCTVTKEEN 374
>gi|403253553|ref|ZP_10919854.1| 16S rRNA methyltransferase B [Thermotoga sp. EMP]
gi|402811087|gb|EJX25575.1| 16S rRNA methyltransferase B [Thermotoga sp. EMP]
Length = 431
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 45/65 (69%)
Query: 257 LDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITT 316
++ + G R+LD CAAPGGKTTAIA L++D+G+++AVD S K+ ++K A + L I T
Sbjct: 233 MELKPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIET 292
Query: 317 YKLDA 321
DA
Sbjct: 293 KIADA 297
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 4/79 (5%)
Query: 415 AENSKGFSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQL 471
AE + ++FDRVL+DAPC++LG P + + + + Q RM QA QL
Sbjct: 297 AERLTEYVQDTFDRVLVDAPCTSLGTARNHPEVLRRVNK-EDFKKFSEIQLRMVQQAWQL 355
Query: 472 VRPGGIIVYSTCTINPGEN 490
+ GGI++YSTCT+ EN
Sbjct: 356 LEKGGILLYSTCTVTKEEN 374
>gi|374633598|ref|ZP_09705963.1| NOL1/NOP2/sun family protein [Metallosphaera yellowstonensis MK1]
gi|373523386|gb|EHP68306.1| NOL1/NOP2/sun family protein [Metallosphaera yellowstonensis MK1]
Length = 352
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 59/109 (54%), Gaps = 12/109 (11%)
Query: 394 TRKNMRRMRNGPGRNQCLGGRAENSKG--------FSPNSFDRVLLDAPCSALGLRPRLF 445
T K + R+R + LG +AE G F D+V++D PCSALG+RP+++
Sbjct: 217 TEKKVSRLREYL---RLLGIKAEVFPGDSRYLYEDFGIKDVDKVIIDPPCSALGVRPKVY 273
Query: 446 AAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEALC 494
+ + L YQ++ + A ++++ GG +VYSTCT+ ENE +
Sbjct: 274 DQKRR-EDLFTFKSYQKQFLNSAYKILKKGGTVVYSTCTVTISENEEVV 321
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 84/215 (39%), Gaps = 47/215 (21%)
Query: 99 LEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGD 158
LE + SGP+ ++ +IV ++ AE+ + G+ VY PGV + KG
Sbjct: 68 LEEAFYTNISGPNKLEL------LDSRIIVDKRTAESAMVGSNVYRPGVKRIQA---KGK 118
Query: 159 VVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRAS 218
V+V +G+++ G + + +
Sbjct: 119 EVSV--------------------------------ISENGVHVANGVYNPYSSLVVNVT 146
Query: 219 EGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTA 278
E + + ++ +V EG I Q S+ A ++P GE I+DM A PGGK +
Sbjct: 147 ESLY-----KTIKVSELKEVKEGYIISQGKASMYVARFVEPAPGELIVDMNAFPGGKLSH 201
Query: 279 IASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC 313
+ L V+ D + KV +++ +G+K
Sbjct: 202 VYQ-LEPRARVIGFDHTEKKVSRLREYLRLLGIKA 235
>gi|170289195|ref|YP_001739433.1| sun protein [Thermotoga sp. RQ2]
gi|170176698|gb|ACB09750.1| sun protein [Thermotoga sp. RQ2]
Length = 431
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 42/60 (70%)
Query: 262 GERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
G R+LD CAAPGGKTTAIA L++D+G+++AVD S K+ ++K A + L I T DA
Sbjct: 238 GLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIETKIADA 297
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 44/79 (55%), Gaps = 4/79 (5%)
Query: 415 AENSKGFSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQL 471
AE + ++FDRVL+DAPC++LG P + + + Q RM QA QL
Sbjct: 297 AERLTEYVQDTFDRVLVDAPCTSLGTARNHPEVLRRVNK-EDFEKFSEIQLRMVQQAWQL 355
Query: 472 VRPGGIIVYSTCTINPGEN 490
+ GGI++YSTCT+ EN
Sbjct: 356 LEKGGILLYSTCTVTKEEN 374
>gi|426356600|ref|XP_004045648.1| PREDICTED: putative methyltransferase NSUN5-like [Gorilla gorilla
gorilla]
Length = 466
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 70/139 (50%), Gaps = 14/139 (10%)
Query: 194 YFERSGL-YIGQGTAMMSRAGIFRASEG---IAVDMHNRIFQLPSFYDVLE------GEI 243
YF+R G Y G+ +++ RA +G + + + P+ D+ E G +
Sbjct: 153 YFKRQGFSYQGRASSLDD----LRALKGKHFLLDSLMPELLVFPTQTDLHEHPLYRAGHL 208
Query: 244 FLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQ 303
LQ+ S + A LDP G ++D CAAPG KT+ +A+LL+++G++ A D ++ +
Sbjct: 209 ILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMA 268
Query: 304 KLAAEMGLKCITTYKLDAL 322
L A G+ C + D L
Sbjct: 269 TLLARAGVSCCELAEEDFL 287
>gi|238924695|ref|YP_002938211.1| sun protein [Eubacterium rectale ATCC 33656]
gi|238876370|gb|ACR76077.1| sun protein [Eubacterium rectale ATCC 33656]
Length = 469
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 64/114 (56%), Gaps = 11/114 (9%)
Query: 218 SEGI---AVDMHNRIFQLPSFYDVL-------EGEIFLQNLPSIVTAHALDPQKGERILD 267
+EG+ AVD N F + F D L +G ++Q++ S++ A P+KG+ ++D
Sbjct: 231 AEGVTVTAVDELNYAFVISGF-DYLNGLQSFRDGLFYVQDISSMLVAQTAAPKKGDYVID 289
Query: 268 MCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
+CAAPGGK+T IA LL+ G V A D + NKV I++ GL ++ DA
Sbjct: 290 VCAAPGGKSTHIAELLQGSGHVFARDLTDNKVDMIEENIDRHGLNNMSAEVWDA 343
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 427 DRVLLDAPCSALGL--RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCT 484
D ++ D PCS LG+ R + + T S+ QR++ D V+P G++VYSTCT
Sbjct: 355 DILICDLPCSGLGVLGRKKDIRYKMTPGSVDELVVLQRQILDTVHTYVKPNGVLVYSTCT 414
Query: 485 INPGENE 491
I+ ENE
Sbjct: 415 IDEAENE 421
>gi|398827829|ref|ZP_10586032.1| tRNA/rRNA cytosine-C5-methylase [Phyllobacterium sp. YR531]
gi|398219127|gb|EJN05624.1| tRNA/rRNA cytosine-C5-methylase [Phyllobacterium sp. YR531]
Length = 457
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 62/113 (54%), Gaps = 11/113 (9%)
Query: 389 VSKADTRKN-MRRMRNGPGRNQCLGGRAE----NSKGFSPNS-FDRVLLDAPCSALGLRP 442
V+ D N ++R+R G + LG AE N ++P FD +LLDAPCS+ G
Sbjct: 285 VTALDLSANRLKRLR---GNLERLGLTAETVEANLSAYNPAELFDAILLDAPCSSTGTVR 341
Query: 443 RL--FAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEAL 493
R +T + +R Q R+ D AV +VRPGGI+V+S C+++P E E +
Sbjct: 342 RHPDVPWTKTPEDVRKLANLQARLLDHAVTIVRPGGIVVFSNCSLDPLEGEVV 394
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 6/87 (6%)
Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
+ +LP F +EGE ++Q+ + + A KG+R+ D+CAAPGGKT A L
Sbjct: 231 LTELPGF---VEGEWWVQDTAASLPAKLFGDIKGQRVADLCAAPGGKT---AQLAHAGAN 284
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKCIT 315
V A+D S N++ ++ +GL T
Sbjct: 285 VTALDLSANRLKRLRGNLERLGLTAET 311
>gi|209877447|ref|XP_002140165.1| NOL1/NOP2/sun family protein [Cryptosporidium muris RN66]
gi|209555771|gb|EEA05816.1| NOL1/NOP2/sun family protein [Cryptosporidium muris RN66]
Length = 712
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 48/73 (65%), Gaps = 4/73 (5%)
Query: 426 FDRVLLDAPCSALG-LR--PRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYST 482
FDR+L D PCS+ G LR P LF+ T H + QR++ +A+ L++P G+IVYST
Sbjct: 226 FDRILCDVPCSSDGTLRKNPNLFSKWNTNFGCSLH-RLQRKILLRALSLIKPKGLIVYST 284
Query: 483 CTINPGENEALCA 495
C+ NP ENEA+ A
Sbjct: 285 CSFNPIENEAVIA 297
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 42/80 (52%), Gaps = 8/80 (10%)
Query: 215 FRASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGG 274
+ S GIA + H+ L F D G IF Q S++ LD K ILDMC+APG
Sbjct: 98 LKKSSGIAREFHS---SLVLFSD--GGCIFRQEAVSMLPVLFLDISKHHAILDMCSAPGS 152
Query: 275 KTTAIASLLR---DEGEVVA 291
KT+ I +L+ D+ E V+
Sbjct: 153 KTSQILEILKSDTDDKEFVS 172
>gi|225181330|ref|ZP_03734774.1| sun protein [Dethiobacter alkaliphilus AHT 1]
gi|225167911|gb|EEG76718.1| sun protein [Dethiobacter alkaliphilus AHT 1]
Length = 451
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 65/115 (56%), Gaps = 3/115 (2%)
Query: 219 EGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTA 278
EG + R+ +L + EG +Q +++T+ LDPQ G+ +LD C+APGGKTT
Sbjct: 219 EGALLTRSGRLTELAPYR---EGRFQVQGESAMLTSRVLDPQAGDAVLDGCSAPGGKTTH 275
Query: 279 IASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESND 333
+A L+ + G+++A+D +++ ++ MG+ + T LDA + + +S D
Sbjct: 276 LAQLMNNSGDILALDIHPHRLELVKANCRRMGVDIVRTQCLDAREIAKENPDSFD 330
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 51/100 (51%), Gaps = 4/100 (4%)
Query: 394 TRKNMRRMRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGL--RPRLFAAEETI 451
+ N RRM R QCL R E +K +P+SFD +LLD PCS G+ R +
Sbjct: 299 VKANCRRMGVDIVRTQCLDAR-EIAKE-NPDSFDCILLDVPCSGFGVIRRKPDLKWRRSE 356
Query: 452 QSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENE 491
+R Q M A +++PGG +VYSTCT P E +
Sbjct: 357 DDIRKLAHVQCDMLKAAAAVLKPGGTLVYSTCTNEPEETD 396
>gi|218290478|ref|ZP_03494598.1| sun protein [Alicyclobacillus acidocaldarius LAA1]
gi|218239499|gb|EED06694.1| sun protein [Alicyclobacillus acidocaldarius LAA1]
Length = 451
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 60/98 (61%), Gaps = 3/98 (3%)
Query: 217 ASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKT 276
A +G+ V + +L ++ D G + +Q+ +++ A L P+ G R++D+CAAPGGKT
Sbjct: 216 AEDGLRVQGQIDVTRLQAYRD---GYVTIQDEGAMLVAPLLRPEPGMRVVDLCAAPGGKT 272
Query: 277 TAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCI 314
T +A L+ D GE+ A D + KV I++ A +GL+ +
Sbjct: 273 THVAELMGDRGEIDAYDVTVAKVRAIRQQAERLGLQSV 310
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 409 QCLGGRAENSKGFSPNS-FDRVLLDAPCSALGLRPRLFAAEETI--QSLRNHGKYQRRMF 465
Q + R + + P + +D L+DAPC+ LG+ R + + + QR +
Sbjct: 308 QSVRPRLGDGRQVQPEALYDAALVDAPCTGLGVMRRRPDLRYRRRPEDVAKLAQLQRELL 367
Query: 466 DQAVQLVRPGGIIVYSTCTINPGENEALC 494
+A +VR GG +VYSTCT+ ENE++
Sbjct: 368 RRACAIVRSGGCVVYSTCTLLKEENESVV 396
>gi|322386005|ref|ZP_08059645.1| RNA methyltransferase Sun [Streptococcus cristatus ATCC 51100]
gi|417922513|ref|ZP_12566001.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
cristatus ATCC 51100]
gi|321269988|gb|EFX52908.1| RNA methyltransferase Sun [Streptococcus cristatus ATCC 51100]
gi|342832610|gb|EGU66905.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
cristatus ATCC 51100]
Length = 440
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 43/73 (58%), Gaps = 4/73 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F PN+FD++L+DAPCS +GL +P + +E N K Q + D Q +R GGI
Sbjct: 315 FGPNAFDKILVDAPCSGIGLIRRKPDIKYNKEN-ADFENLQKIQLDILDSVCQSLRKGGI 373
Query: 478 IVYSTCTINPGEN 490
I YSTCTI EN
Sbjct: 374 ITYSTCTIVSAEN 386
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G I +Q+ S + A L + E+ILD C+APGGK +AS L G++ A+D +K+
Sbjct: 227 KGLITIQDESSQLVAPTLQIEGYEQILDACSAPGGKAVHMASYLTS-GQITALDLYVHKL 285
Query: 300 MDIQKLAAEMGL-KCITTYKLDALK 323
I++ A +GL ITT KLDA K
Sbjct: 286 NLIRQNAERLGLADKITTKKLDATK 310
>gi|124023762|ref|YP_001018069.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9303]
gi|123964048|gb|ABM78804.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9303]
Length = 450
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
+ Q P + +G +Q+ + + A L PQ G+RILD CAAPGGK T + L+ GE
Sbjct: 240 LSQWPGYQ---QGHWCVQDRSAQLVAPLLGPQPGDRILDACAAPGGKATHLVELMGGSGE 296
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
V AVDRS ++ + + AA +G C+ DA
Sbjct: 297 VWAVDRSAGRLKRLAENAARLGGDCLHALVADA 329
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 424 NSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGK--YQRRMFDQAVQLVRPGGIIVYS 481
SF R+L+DAPCS LG R A + L+ G Q ++ + + L+ GG +VY+
Sbjct: 341 GSFQRILVDAPCSGLGTLARHADARWRVTPLQVEGLVILQSKLLEGLLPLLSSGGRLVYA 400
Query: 482 TCTINPGEN 490
TCTI+P EN
Sbjct: 401 TCTIHPAEN 409
>gi|410255004|gb|JAA15469.1| NOP2/Sun domain family, member 5 [Pan troglodytes]
gi|410255006|gb|JAA15470.1| NOP2/Sun domain family, member 5 [Pan troglodytes]
gi|410339407|gb|JAA38650.1| NOP2/Sun domain family, member 5 [Pan troglodytes]
gi|410339409|gb|JAA38651.1| NOP2/Sun domain family, member 5 [Pan troglodytes]
Length = 466
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 70/139 (50%), Gaps = 14/139 (10%)
Query: 194 YFERSGL-YIGQGTAMMSRAGIFRASEG---IAVDMHNRIFQLPSFYDVLE------GEI 243
YF+R G Y G+ +++ RA +G + + + P+ D+ E G +
Sbjct: 153 YFKRQGFSYQGRASSLDD----LRALKGKHFLLDSLMPELLVFPAQTDLHEHPLYRAGHL 208
Query: 244 FLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQ 303
LQ+ S + A LDP G ++D CAAPG KT+ +A+LL+++G++ A D ++ +
Sbjct: 209 ILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMA 268
Query: 304 KLAAEMGLKCITTYKLDAL 322
L A G+ C + D L
Sbjct: 269 TLLARAGVSCCELAEEDFL 287
>gi|452992003|emb|CCQ96625.1| Ribosomal RNA small subunit methyltransferase B [Clostridium
ultunense Esp]
Length = 453
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 50/83 (60%)
Query: 245 LQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQK 304
+Q+ S++ A L P+ G+R+LD CAAPGGKT+ IA L++DEGE++A D +K I++
Sbjct: 241 IQDESSMLVATLLKPEAGQRVLDACAAPGGKTSHIAELMKDEGEILANDIHPHKGSLIEE 300
Query: 305 LAAEMGLKCITTYKLDALKAVRR 327
+G I DAL R
Sbjct: 301 QKKRLGFTSIQVMTGDALTLPER 323
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 44/69 (63%), Gaps = 4/69 (5%)
Query: 426 FDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYST 482
FDR+L+DAPCS LG+ +P + +E + L + + Q + ++ L+ G+++YST
Sbjct: 328 FDRILIDAPCSGLGVIRRKPEIKWRKEE-RELSHLPELQYALLERLSPLLGEKGLLIYST 386
Query: 483 CTINPGENE 491
CT+NP ENE
Sbjct: 387 CTVNPEENE 395
>gi|76802670|ref|YP_330765.1| rRNA methylase [Natronomonas pharaonis DSM 2160]
gi|76558535|emb|CAI50127.1| tRNA/rRNA cytosine-C5-methylase [Natronomonas pharaonis DSM 2160]
Length = 303
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 58/105 (55%), Gaps = 6/105 (5%)
Query: 223 VDMHNRIFQLP------SFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKT 276
VD H+ +F+L + + + G ++ Q S V A AL PQ GER+LD CAAPG KT
Sbjct: 55 VDWHDGLFRLGEGESPGNSWPFVHGWVYGQEEVSAVPALALAPQPGERVLDCCAAPGSKT 114
Query: 277 TAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
T +A+L+ D G +V D + ++ ++ A G+ I + DA
Sbjct: 115 TQLAALMDDRGLLVGNDNNLGRLSALRSNAERCGVTNIAVTRQDA 159
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 419 KGFSPNSFDRVLLDAPCSALG-LRPRLFAAE-ETIQSLRNHGKYQRRMFDQAVQLVRPGG 476
K F FDR L+D PCS G +R A + ++ + Q+ + ++A+++ R GG
Sbjct: 165 KPFGGERFDRTLVDVPCSCEGTVRKNPDAVDGWSLDHIEGIAGVQKAILERAIEVTRDGG 224
Query: 477 IIVYSTCTINPGENEAL 493
+VYSTCT P ENEA+
Sbjct: 225 TVVYSTCTFAPEENEAV 241
>gi|336434863|ref|ZP_08614583.1| hypothetical protein HMPREF0988_00168 [Lachnospiraceae bacterium
1_4_56FAA]
gi|336003573|gb|EGN33656.1| hypothetical protein HMPREF0988_00168 [Lachnospiraceae bacterium
1_4_56FAA]
Length = 409
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 10/77 (12%)
Query: 421 FSPNSFDRVLLDAPCSALGLRPRLFAAEE-TIQSLRNHG-----KYQRRMFDQAVQLVRP 474
F P FD++L+DAPCS G+ F E+ +++ HG + Q+ + QA ++RP
Sbjct: 169 FFPEYFDKILIDAPCSGEGM----FRKEKKMVKAWEEHGPAFFSRLQQSIITQAASMLRP 224
Query: 475 GGIIVYSTCTINPGENE 491
GG+++YSTCT +P ENE
Sbjct: 225 GGMLLYSTCTFDPLENE 241
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 40/64 (62%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G +LQ ++ A L + G+++LD+CAAPGGK T + + L+ EG +VA D S+++
Sbjct: 83 GLYYLQEPSAMTPADRLPVEPGDKVLDVCAAPGGKATELGAKLKGEGVLVANDISNSRAR 142
Query: 301 DIQK 304
+ K
Sbjct: 143 GLLK 146
>gi|119590102|gb|EAW69696.1| hCG39703, isoform CRA_e [Homo sapiens]
Length = 428
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 70/139 (50%), Gaps = 14/139 (10%)
Query: 194 YFERSGL-YIGQGTAMMSRAGIFRASEG---IAVDMHNRIFQLPSFYDVLE------GEI 243
YF+R G Y G+ +++ RA +G + + + P+ D+ E G +
Sbjct: 115 YFKRQGFSYQGRASSLDD----LRALKGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHL 170
Query: 244 FLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQ 303
LQ+ S + A LDP G ++D CAAPG KT+ +A+LL+++G++ A D ++ +
Sbjct: 171 ILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMA 230
Query: 304 KLAAEMGLKCITTYKLDAL 322
L A G+ C + D L
Sbjct: 231 TLLARAGVSCCELAEEDFL 249
>gi|331269683|ref|YP_004396175.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum BKT015925]
gi|329126233|gb|AEB76178.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum BKT015925]
Length = 443
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 62/105 (59%), Gaps = 3/105 (2%)
Query: 219 EGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTA 278
E I ++ I P F D G+I +Q+ +++ A ++ ++G+ +LD+C+APGGKTT
Sbjct: 212 EAIVINKGKSIESNPLFED---GKITVQDESAMLVAPTMNVEQGDLVLDLCSAPGGKTTH 268
Query: 279 IASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323
I+ ++ + G+V A D NK+ ++ A +G+ I KLDA K
Sbjct: 269 ISEIMNNTGKVKAFDIHENKLNLVKDNAKRLGINNIECSKLDASK 313
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Query: 427 DRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTC 483
D VL+D PCS LG+ +P + + ++S+++ K Q+ + A + V+ GG ++YSTC
Sbjct: 323 DAVLIDVPCSGLGIIRKKPEI-KYTKNMESVKDIVKIQKEIMKNAARYVKVGGTLLYSTC 381
Query: 484 TINPGENE 491
TIN ENE
Sbjct: 382 TINKKENE 389
>gi|406910295|gb|EKD50348.1| hypothetical protein ACD_62C00567G0011 [uncultured bacterium]
Length = 323
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 5/72 (6%)
Query: 426 FDRVLLDAPCSALGL----RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYS 481
FDRVL+DAPCS G P F+ ++ +RN K Q+++ A+ L RPGG++ YS
Sbjct: 188 FDRVLVDAPCSGEGTFCINHPAGFS-HWSLAFVRNMAKLQKKLLSLALTLTRPGGLVCYS 246
Query: 482 TCTINPGENEAL 493
TC+++P ENE++
Sbjct: 247 TCSLSPEENESV 258
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 58/100 (58%), Gaps = 10/100 (10%)
Query: 194 YFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVT 253
+F++ + Q + S I + S+ V + R++Q EGEI+LQN S +
Sbjct: 55 FFKKENILFEQDKYLPSCLYIKKLSQKKLVGL--RLYQ--------EGEIYLQNPSSQIP 104
Query: 254 AHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVD 293
L P+ GER+LD+CA+PG KTT +A+L+ G+++A++
Sbjct: 105 PLVLAPKPGERVLDLCASPGSKTTQMAALMSGRGKIIALE 144
>gi|159902963|ref|YP_001550307.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9211]
gi|159888139|gb|ABX08353.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9211]
Length = 432
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 48/81 (59%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
GE +Q+ S A L+ + G+RILD C+APGGK T +A L+ D GE+ AVDRS ++
Sbjct: 231 GEWSVQDRSSQWIAPLLEAEPGDRILDACSAPGGKATHLAELIDDNGEIWAVDRSPKRLQ 290
Query: 301 DIQKLAAEMGLKCITTYKLDA 321
+ + A +GL + DA
Sbjct: 291 KVSENATRLGLNSLKCLAADA 311
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 402 RNGPGRNQCLGGRAE---NSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEE--TIQSLRN 456
R G +CL A + K F R+L+DAPCS LG R A T + +
Sbjct: 298 RLGLNSLKCLAADASMLLDCKPHWKGYFQRILVDAPCSGLGTLSRNPDARWRMTPEKIDE 357
Query: 457 HGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGEN 490
Q R+ + L+ PGG IVYSTCT++P EN
Sbjct: 358 LIILQARLLRGVLPLLSPGGRIVYSTCTMHPEEN 391
>gi|150399201|ref|YP_001322968.1| NOL1/NOP2/sun family RNA methylase [Methanococcus vannielii SB]
gi|150011904|gb|ABR54356.1| putative RNA methylase, NOL1/NOP2/sun family [Methanococcus
vannielii SB]
Length = 265
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 60/93 (64%)
Query: 230 FQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEV 289
F + + + L G FLQ++ SI+ + L+P K +++LDMC+APGGKTT ++ L+ +EG +
Sbjct: 46 FSMGATPEYLSGLYFLQSISSIIPSIVLNPTKDDKVLDMCSAPGGKTTHLSQLMENEGCI 105
Query: 290 VAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322
VAV+ + N++ ++ MG+K I +A+
Sbjct: 106 VAVEINKNRLKSLRSNINRMGIKNIIMLNTNAI 138
Score = 40.4 bits (93), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 426 FDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCT 484
FD++LLDAPC+ ++ +T + + K Q +F A++++ GG +VYSTC+
Sbjct: 146 FDKILLDAPCTGNEIKDS--DRVKTKRDILFCAKRQVELFRTAIEVLSEGGQLVYSTCS 202
>gi|354565440|ref|ZP_08984615.1| sun protein [Fischerella sp. JSC-11]
gi|353549399|gb|EHC18841.1| sun protein [Fischerella sp. JSC-11]
Length = 491
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 67/139 (48%), Gaps = 20/139 (14%)
Query: 196 ERSGLYIGQGTAMMSRAGIFRAS-EGIAVDMH------NRIFQLPSFYDVLEGEIFLQNL 248
E+ +++ Q A+ R RA E + + R+ LP +L +QNL
Sbjct: 211 EKLCIWMNQTPAIDLRVNPLRADLETVEAALQAAGISCQRLSHLPQALRLLSHPGQIQNL 270
Query: 249 PSI-------------VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRS 295
P + H LDPQ E ++D CAAPGGKTT IA L++D G++ A DR+
Sbjct: 271 PGFNQGWWSIQDSSAQLVGHFLDPQIKEVVIDSCAAPGGKTTHIAELMQDTGKIWACDRT 330
Query: 296 HNKVMDIQKLAAEMGLKCI 314
+++ +Q+ + LK I
Sbjct: 331 ASRMRKLQENMQRLHLKSI 349
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 60/111 (54%), Gaps = 5/111 (4%)
Query: 385 ERTYVSKADTRKNMRRMRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGLRPRL 444
+RT ++NM+R+ + C+G + N F NS DRVLLDAPCS LG R
Sbjct: 328 DRTASRMRKLQENMQRL-HLKSIEICIGD-SRNLSQFR-NSADRVLLDAPCSGLGTLHRH 384
Query: 445 FAAE--ETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEAL 493
A +T S++ Q+ + V+ GG++VY+TCT++P ENE +
Sbjct: 385 ADARWRQTPDSVKELSVLQKELLSHTSTFVKEGGVLVYATCTLHPAENETV 435
>gi|170077132|ref|YP_001733770.1| ribosomal RNA small subunit methyltransferase B (rRNA
(cytosine-C(5)-)-methyltransferase) [Synechococcus sp.
PCC 7002]
gi|169884801|gb|ACA98514.1| ribosomal RNA small subunit methyltransferase B (rRNA
(cytosine-C(5)-)-methyltransferase) [Synechococcus sp.
PCC 7002]
Length = 447
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 223 VDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASL 282
V+ I LP + EG +Q+ + + H LDPQ GE I+D CAAPGGKTT IA
Sbjct: 220 VEKRGLIQDLPGYK---EGWWTIQDASAQLVTHLLDPQPGEVIIDACAAPGGKTTHIAEK 276
Query: 283 LRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITT 316
++D G + A D+ ++ I++ A + L I T
Sbjct: 277 MQDRGTIWASDKYQARINKIEQNARRLKLSMIRT 310
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 53/102 (51%), Gaps = 7/102 (6%)
Query: 396 KNMRRMRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQ 452
+N RR++ R L G + F N DRVLLD PCS LG RP + ++ Q
Sbjct: 298 QNARRLKLSMIRT--LIGDSRTYSQFR-NMADRVLLDVPCSGLGTLHKRPDI-RWQQNPQ 353
Query: 453 SLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEALC 494
+ + Q + V+PGG +VY+TCT+NP ENEA+
Sbjct: 354 KIAQLTQLQGELLTTGATWVKPGGYLVYATCTLNPAENEAIA 395
>gi|116072280|ref|ZP_01469547.1| Fmu, rRNA SAM-dependent methyltransferase [Synechococcus sp. BL107]
gi|116064802|gb|EAU70561.1| Fmu, rRNA SAM-dependent methyltransferase [Synechococcus sp. BL107]
Length = 445
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 46/75 (61%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
EG +Q+ + A LDP G+R+LD CAAPGGK T +A L+ D GE+ AVDRS ++
Sbjct: 239 EGYWCVQDRAAQWVAPLLDPNPGDRVLDACAAPGGKATHLAELMGDVGEIWAVDRSAGRL 298
Query: 300 MDIQKLAAEMGLKCI 314
+ AA +GL I
Sbjct: 299 KRVAVNAARLGLGSI 313
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 424 NSFDRVLLDAPCSALGLRPRLFAAEE--TIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYS 481
+F +L+DAPCS LG R A T +++++ Q+ + D V L+ PGG +VY+
Sbjct: 332 EAFQSILIDAPCSGLGTLARHPDARWRMTPKAIQDLLPQQQALLDGLVPLLAPGGRLVYA 391
Query: 482 TCTINPGEN 490
TCT++P EN
Sbjct: 392 TCTMHPAEN 400
>gi|23199998|ref|NP_683759.1| putative methyltransferase NSUN5 isoform 1 [Homo sapiens]
gi|21552754|gb|AAM62310.1|AF412028_1 Williams-Beuren syndrome critical region protein 20 copy A [Homo
sapiens]
gi|14165561|gb|AAH08084.1| NOL1/NOP2/Sun domain family, member 5 [Homo sapiens]
gi|37674386|gb|AAQ96839.1| unknown [Homo sapiens]
gi|119590101|gb|EAW69695.1| hCG39703, isoform CRA_d [Homo sapiens]
gi|123990710|gb|ABM83920.1| NOL1/NOP2/Sun domain family, member 5 [synthetic construct]
gi|123999331|gb|ABM87241.1| NOL1/NOP2/Sun domain family, member 5 [synthetic construct]
gi|307684594|dbj|BAJ20337.1| NOP2/Sun domain family, member 5 [synthetic construct]
Length = 466
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 70/139 (50%), Gaps = 14/139 (10%)
Query: 194 YFERSGL-YIGQGTAMMSRAGIFRASEG---IAVDMHNRIFQLPSFYDVLE------GEI 243
YF+R G Y G+ +++ RA +G + + + P+ D+ E G +
Sbjct: 153 YFKRQGFSYQGRASSLDD----LRALKGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHL 208
Query: 244 FLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQ 303
LQ+ S + A LDP G ++D CAAPG KT+ +A+LL+++G++ A D ++ +
Sbjct: 209 ILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMA 268
Query: 304 KLAAEMGLKCITTYKLDAL 322
L A G+ C + D L
Sbjct: 269 TLLARAGVSCCELAEEDFL 287
>gi|189067497|dbj|BAG37756.1| unnamed protein product [Homo sapiens]
Length = 466
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 70/139 (50%), Gaps = 14/139 (10%)
Query: 194 YFERSGL-YIGQGTAMMSRAGIFRASEG---IAVDMHNRIFQLPSFYDVLE------GEI 243
YF+R G Y G+ +++ RA +G + + + P+ D+ E G +
Sbjct: 153 YFKRQGFSYQGRASSLDD----LRALKGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHL 208
Query: 244 FLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQ 303
LQ+ S + A LDP G ++D CAAPG KT+ +A+LL+++G++ A D ++ +
Sbjct: 209 ILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMA 268
Query: 304 KLAAEMGLKCITTYKLDAL 322
L A G+ C + D L
Sbjct: 269 TLLARAGVSCCELAEEDFL 287
>gi|428221462|ref|YP_007105632.1| ribosomal RNA small subunit methyltransferase RsmB [Synechococcus
sp. PCC 7502]
gi|427994802|gb|AFY73497.1| ribosomal RNA small subunit methyltransferase RsmB [Synechococcus
sp. PCC 7502]
Length = 441
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 50/83 (60%)
Query: 232 LPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVA 291
+PS EG +Q+ + +T LDPQ E I+D CAAPGGKTT IA L+ ++G + A
Sbjct: 222 IPSLVGFTEGLWTVQDASAQLTGLILDPQPNETIIDACAAPGGKTTHIAELMGNQGLIYA 281
Query: 292 VDRSHNKVMDIQKLAAEMGLKCI 314
DR+ +++ +Q+ +GL +
Sbjct: 282 CDRTASRLQKLQQNCDRLGLSIV 304
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Query: 414 RAENSKGFS--PNSFDRVLLDAPCSALGLRPRLFAAE--ETIQSLRNHGKYQRRMFDQAV 469
R +S+ F+ N DRVLLD PCS LG R A + + + Q + +QA
Sbjct: 307 RVGDSREFADFQNQADRVLLDVPCSGLGTLHRHADARWRQNPEESKKLAILQTELLNQAA 366
Query: 470 QLVRPGGIIVYSTCTINPGENEAL 493
V+ GGI+VYSTCTI+P ENEA+
Sbjct: 367 TWVKNGGILVYSTCTIHPDENEAV 390
>gi|83589751|ref|YP_429760.1| sun protein [Moorella thermoacetica ATCC 39073]
gi|83572665|gb|ABC19217.1| sun protein [Moorella thermoacetica ATCC 39073]
Length = 457
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 61/117 (52%), Gaps = 3/117 (2%)
Query: 217 ASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKT 276
A EG+ V+ + PSF EG ++Q+ S + +HAL P G ++D AAPGGKT
Sbjct: 218 APEGLVVEGLGALEASPSFQ---EGLFYVQDEGSQLVSHALHPDSGAWVIDASAAPGGKT 274
Query: 277 TAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESND 333
T +A L+ D G ++A D ++ I +G+ C+ T +DA + R + D
Sbjct: 275 THLAQLMADRGTILACDVHRGRLDLIAANCRRLGVTCVRTVLVDARELGERYPAAAD 331
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 4/72 (5%)
Query: 423 PNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIV 479
P + D +L+DAPCS LG+ RP +E ++ R + Q + A Q ++PGG++V
Sbjct: 327 PAAADYLLIDAPCSGLGVLRRRPDARWRKEAPRT-RELARLQLAILMGARQALKPGGVLV 385
Query: 480 YSTCTINPGENE 491
YSTCT+ P EN+
Sbjct: 386 YSTCTLLPEENQ 397
>gi|332867777|ref|XP_519138.3| PREDICTED: putative methyltransferase NSUN5 [Pan troglodytes]
Length = 470
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 70/139 (50%), Gaps = 14/139 (10%)
Query: 194 YFERSGL-YIGQGTAMMSRAGIFRASEG---IAVDMHNRIFQLPSFYDVLE------GEI 243
YF+R G Y G+ +++ RA +G + + + P+ D+ E G +
Sbjct: 153 YFKRQGFSYQGRASSLDD----LRALKGKHFLLDSLMPELLVFPAQTDLHEHPLYRAGHL 208
Query: 244 FLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQ 303
LQ+ S + A LDP G ++D CAAPG KT+ +A+LL+++G++ A D ++ +
Sbjct: 209 ILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMA 268
Query: 304 KLAAEMGLKCITTYKLDAL 322
L A G+ C + D L
Sbjct: 269 TLLARAGVSCCELAEEDFL 287
>gi|407477614|ref|YP_006791491.1| ribosomal RNA small subunit methyltransferase B [Exiguobacterium
antarcticum B7]
gi|407061693|gb|AFS70883.1| Ribosomal RNA small subunit methyltransferase B [Exiguobacterium
antarcticum B7]
Length = 442
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 55/99 (55%), Gaps = 5/99 (5%)
Query: 396 KNMRRMRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQ 452
K +R+ + L R S+ F P SFDR+L+DAPCS LG+ +P + + +
Sbjct: 290 KQAKRLGLETVQTDVLDARQAGSR-FDPASFDRILVDAPCSGLGVIRRKPDIKWTKRP-E 347
Query: 453 SLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENE 491
L QR++ + + LV+ GG VYSTCT++P ENE
Sbjct: 348 DLTQLPVIQRQIIEAVLPLVKTGGTFVYSTCTMDPLENE 386
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Query: 237 DVLE-GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRS 295
D+LE G + LQ+ S++ A A+ Q +R+LD CAAPGGK IA L G + A+D
Sbjct: 223 DLLERGYLSLQDESSMLVASAVGAQVSDRVLDSCAAPGGKAMHIAEGL-TTGSLFALDLH 281
Query: 296 HNKVMDIQKLAAEMGLKCITTYKLDALKAVRR 327
+KV ++K A +GL+ + T LDA +A R
Sbjct: 282 PHKVKLLEKQAKRLGLETVQTDVLDARQAGSR 313
>gi|258511305|ref|YP_003184739.1| sun protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius
DSM 446]
gi|257478031|gb|ACV58350.1| sun protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius
DSM 446]
Length = 451
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 60/98 (61%), Gaps = 3/98 (3%)
Query: 217 ASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKT 276
A +G+ V + +L ++ D G + +Q+ +++ A L P+ G R++D+CAAPGGKT
Sbjct: 216 AEDGLRVQGQVDVTRLQAYRD---GYVTIQDEGAMLVAPLLRPEPGMRVVDLCAAPGGKT 272
Query: 277 TAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCI 314
T +A L+ D GE+ A D + KV I++ A +GL+ +
Sbjct: 273 THLAELMGDRGEIDAYDVTVAKVRAIRQQAERLGLQSV 310
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 409 QCLGGRAENSKGFSPNS-FDRVLLDAPCSALGLRPRLFAAEETI--QSLRNHGKYQRRMF 465
Q + R + + +P +D L+DAPC+ LG+ R + + + QR +
Sbjct: 308 QSVHPRLGDGRQVTPEGLYDAALVDAPCTGLGVMRRRPDLRYRRRPEDVAQLAQLQRALL 367
Query: 466 DQAVQLVRPGGIIVYSTCTINPGENEALC 494
+A +VR GG +VYSTCT+ ENE++
Sbjct: 368 RRACAIVRSGGCVVYSTCTLLKEENESVV 396
>gi|402467155|gb|EJW02504.1| hypothetical protein EDEG_03090 [Edhazardia aedis USNM 41457]
Length = 385
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 51/84 (60%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
GEI +QN S + AH L+P ++D CAAPG KT+ +AS++ + G++ A +++H++
Sbjct: 175 GEIIIQNYSSCLPAHVLNPPPKSFVIDACAAPGNKTSQLASIMGNTGKIFAYEKNHDRFQ 234
Query: 301 DIQKLAAEMGLKCITTYKLDALKA 324
+ + A+ G+ T+ D +A
Sbjct: 235 TLNTMLAKHGVTNTETFCKDFTEA 258
>gi|421074228|ref|ZP_15535268.1| sun protein [Pelosinus fermentans JBW45]
gi|392527734|gb|EIW50820.1| sun protein [Pelosinus fermentans JBW45]
Length = 443
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 57/103 (55%), Gaps = 3/103 (2%)
Query: 219 EGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTA 278
EGI + + L S D G +Q+ S++ AH L P+ E I+D C APGGK+T
Sbjct: 213 EGIVCHSYPALSTLKSLRD---GLFQIQDESSMLVAHVLAPKPDEFIIDACGAPGGKSTH 269
Query: 279 IASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
IA+L+ ++G V++ D +K+ Q+ A +GL I LDA
Sbjct: 270 IATLMENKGRVLSTDIYEHKLALTQENAQRLGLTIIDVQSLDA 312
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 427 DRVLLDAPCSALGLRPRLFAAE--ETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCT 484
D+VL+DAPCS LG+ R + +T + Q + A + V+ GG +VYSTCT
Sbjct: 324 DKVLVDAPCSGLGVLRRKADSRWRKTEDMFKELPILQMAILKSAAECVKLGGTLVYSTCT 383
Query: 485 INPGENE 491
P EN+
Sbjct: 384 TEPEENQ 390
>gi|352096314|ref|ZP_08957194.1| sun protein [Synechococcus sp. WH 8016]
gi|351677008|gb|EHA60159.1| sun protein [Synechococcus sp. WH 8016]
Length = 451
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 48/82 (58%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G +Q+ + A L PQ G+R+LD CAAPGGKTT +A L+ D GE+ AVDRS ++
Sbjct: 243 QGHWSVQDRSAQGVAPLLAPQPGDRVLDACAAPGGKTTHLAELMGDGGEIWAVDRSAGRL 302
Query: 300 MDIQKLAAEMGLKCITTYKLDA 321
+ A+ +G I DA
Sbjct: 303 KRVAANASRLGCASIQALAADA 324
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 419 KGFSPNSFDRVLLDAPCSALGLRPRLFAAEE--TIQSLRNHGKYQRRMFDQAVQLVRPGG 476
+GF F R+LLD PCS LG R A T ++ Q R+ + + L+ PGG
Sbjct: 335 RGF----FQRILLDVPCSGLGTLSRHPDARWRVTPATVEELLPLQARLLEAMLPLLAPGG 390
Query: 477 IIVYSTCTINPGENEA 492
+VY+TCTI+P EN A
Sbjct: 391 RLVYATCTIHPDENVA 406
>gi|288942527|ref|YP_003444767.1| RNA methylase, NOL1/NOP2/sun family [Allochromatium vinosum DSM
180]
gi|288897899|gb|ADC63735.1| RNA methylase, NOL1/NOP2/sun family [Allochromatium vinosum DSM
180]
Length = 488
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 44/73 (60%), Gaps = 4/73 (5%)
Query: 426 FDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYST 482
FDR+LLDAPCS+ G P L + S R G QR + +AVQ RPGG+I+YST
Sbjct: 189 FDRILLDAPCSSEGTIRRNPSLLQRHDPAGSQR-LGPRQRALLRKAVQRCRPGGLILYST 247
Query: 483 CTINPGENEALCA 495
CT P ENE + A
Sbjct: 248 CTFAPEENELVVA 260
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 42/65 (64%)
Query: 257 LDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITT 316
+D + G+R+LDMCAAPGGKT IA L + G VVA D S+ ++ +Q +G+ +TT
Sbjct: 115 MDLKPGQRVLDMCAAPGGKTAQIAFALDNRGTVVANDISYGRIKALQGNLDRLGVLNVTT 174
Query: 317 YKLDA 321
+ DA
Sbjct: 175 TQSDA 179
>gi|262275788|ref|ZP_06053597.1| ribosomal RNA small subunit methyltransferase F [Grimontia hollisae
CIP 101886]
gi|262219596|gb|EEY70912.1| ribosomal RNA small subunit methyltransferase F [Grimontia hollisae
CIP 101886]
Length = 476
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Query: 420 GFSPNSFDRVLLDAPCSALG-LRPRLFA-AEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
G+ P FD VLLDAPCS G +R A + +++S++ + QR + A ++PGG+
Sbjct: 181 GWLPEMFDAVLLDAPCSGEGTIRKDADAFSNWSLESVQEIAQTQRDLITSAFHALKPGGV 240
Query: 478 IVYSTCTINPGENEALC 494
+VYSTCT+N EN+ +C
Sbjct: 241 MVYSTCTLNHDENQHIC 257
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 239 LEGEIFLQNLPSI--VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296
+ G ++Q S+ VTA + + E +LDM AAPG KTT IA+ L + G +VA + S
Sbjct: 92 MAGLFYIQEASSMLPVTALLQNTTELEYVLDMAAAPGSKTTQIAAALNNNGVLVANEYSA 151
Query: 297 NKV 299
++V
Sbjct: 152 SRV 154
>gi|345304456|ref|YP_004826358.1| tRNA (cytosine-5-)-methyltransferase [Rhodothermus marinus
SG0.5JP17-172]
gi|345113689|gb|AEN74521.1| tRNA (cytosine-5-)-methyltransferase [Rhodothermus marinus
SG0.5JP17-172]
Length = 304
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 46/76 (60%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G +Q S++ LDPQ GER+LD+CAAPGGKT IA +R+ G VVA DR+ ++
Sbjct: 82 GHYHVQEEVSLLPVPLLDPQPGERVLDLCAAPGGKTAQIAVRMRNRGTVVANDRNPLRLR 141
Query: 301 DIQKLAAEMGLKCITT 316
+ +GL +TT
Sbjct: 142 QLSGTIERLGLLNVTT 157
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 34/66 (51%)
Query: 426 FDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTI 485
FDRVL+D PCS G + + Q + +AV L RPGG IVY+TCT
Sbjct: 172 FDRVLIDVPCSCEGNFRKDQQVADAFAGAPELCGLQTALLHRAVTLCRPGGRIVYATCTF 231
Query: 486 NPGENE 491
P ENE
Sbjct: 232 APEENE 237
>gi|90410339|ref|ZP_01218355.1| putative sun/nucleolar protein family protein [Photobacterium
profundum 3TCK]
gi|90328580|gb|EAS44864.1| putative sun/nucleolar protein family protein [Photobacterium
profundum 3TCK]
Length = 476
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Query: 420 GFSPNSFDRVLLDAPCSALG-LRPRLFA-AEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
G++P SFD +LLDAPCS G +R A A ++ S+ + QR + A Q ++ GG+
Sbjct: 181 GWAPESFDTILLDAPCSGEGAIRKDDDAMANWSLSSIEDIAAIQRNLIISAFQALKTGGM 240
Query: 478 IVYSTCTINPGENEALC 494
+VYSTCT+N EN+ +C
Sbjct: 241 MVYSTCTLNLSENQHVC 257
>gi|239826566|ref|YP_002949190.1| sun protein [Geobacillus sp. WCH70]
gi|239806859|gb|ACS23924.1| sun protein [Geobacillus sp. WCH70]
Length = 447
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 52/81 (64%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G I +Q+ S++ A AL P++ ER+LD CAAPGGK+T IA L+ + G+V+ D +KV
Sbjct: 231 GWITIQDESSMLVARALGPKEHERVLDSCAAPGGKSTHIAELMNNTGQVICADIHEHKVN 290
Query: 301 DIQKLAAEMGLKCITTYKLDA 321
I++ A + L I+ LD+
Sbjct: 291 LIEENAKRLQLTNISARVLDS 311
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 45/80 (56%), Gaps = 8/80 (10%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAA--EETIQSLRNHGKYQRRMFDQAVQLVRPG 475
F FD++L+DAPCS G+ +P + A E I SL QR + L++ G
Sbjct: 318 FEREMFDKILVDAPCSGFGVIRRKPDIKYAKTEADIPSL---VALQREILHAVAPLLKKG 374
Query: 476 GIIVYSTCTINPGENEALCA 495
G +VYSTCTI+ ENEA+ A
Sbjct: 375 GTLVYSTCTIDRDENEAVIA 394
>gi|300121088|emb|CBK21470.2| unnamed protein product [Blastocystis hominis]
Length = 690
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 43/64 (67%)
Query: 237 DVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296
+ L G LQ+ S++ AL+PQ ERILDMCAAPGGKTT IA L+++ G +VA D
Sbjct: 254 EYLAGHYMLQSASSMLPVMALNPQPNERILDMCAAPGGKTTHIAQLMKNTGVLVANDLKK 313
Query: 297 NKVM 300
+++
Sbjct: 314 ERLI 317
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 6/75 (8%)
Query: 426 FDRVLLDAPCSALGL--RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLV----RPGGIIV 479
FDRVLLDAPC+ LG+ R T++ + + Q+ + A+ + + GG++V
Sbjct: 348 FDRVLLDAPCTGLGVISRDPSVKMSRTVKDMVQNAFVQKLLILAAIDSIDANSKSGGVLV 407
Query: 480 YSTCTINPGENEALC 494
YSTC+++ ENEA+
Sbjct: 408 YSTCSVSVYENEAVV 422
>gi|384135896|ref|YP_005518610.1| Fmu (Sun) domain-containing protein [Alicyclobacillus
acidocaldarius subsp. acidocaldarius Tc-4-1]
gi|339289981|gb|AEJ44091.1| Fmu (Sun) domain protein [Alicyclobacillus acidocaldarius subsp.
acidocaldarius Tc-4-1]
Length = 477
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 55/94 (58%), Gaps = 5/94 (5%)
Query: 236 YDVLE--GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEG--EVVA 291
Y VL G +LQ+ ++ A ALDPQ GERILD+CAAPGGKTT A L G ++VA
Sbjct: 79 YTVLHQAGAFYLQDPSAMAVAVALDPQPGERILDLCAAPGGKTTHAALLAARRGGAQLVA 138
Query: 292 VDRSHNKVMDIQKLAAEMGLKC-ITTYKLDALKA 324
D ++V+ + + +G C IT +AL A
Sbjct: 139 NDIHRDRVLALAENVERVGAPCAITNEPPEALAA 172
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 423 PNSFDRVLLDAPCSALGL--RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
P +FD +++DAPCS G+ + AE + Q+ + A+ +++PGG +VY
Sbjct: 175 PQAFDAIVVDAPCSGEGMFRKDPAVRAEWRPDAPERFQALQKEILRHALTMLKPGGRLVY 234
Query: 481 STCTINPGENE 491
STCT+NP ENE
Sbjct: 235 STCTLNPLENE 245
>gi|421500980|ref|ZP_15947961.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium
necrophorum subsp. funduliforme Fnf 1007]
gi|402266693|gb|EJU16112.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium
necrophorum subsp. funduliforme Fnf 1007]
Length = 432
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 54/82 (65%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
EG++ +Q+ S + A L + GE +LD C+APGGKT+ +A +++EG+++++D +K+
Sbjct: 219 EGKMIVQDAASYLAAKNLGAKAGEIVLDTCSAPGGKTSVLAEEMKNEGQILSLDIHTHKI 278
Query: 300 MDIQKLAAEMGLKCITTYKLDA 321
IQ+ ++G+ + KLDA
Sbjct: 279 KLIQENCKKLGITIVQAVKLDA 300
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 8/71 (11%)
Query: 426 FDRVLLDAPCSALGLRPR----LFAAE-ETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
FDR+L+DAPCS G+ + L+ + E I L QR + A ++++ GG +VY
Sbjct: 310 FDRILVDAPCSGYGVLAKKPEGLYTKKPENIGELVI---LQREILASAAEVLKVGGEMVY 366
Query: 481 STCTINPGENE 491
STCTI P EN+
Sbjct: 367 STCTILPQENQ 377
>gi|340755287|ref|ZP_08691980.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium sp.
D12]
gi|419841505|ref|ZP_14364874.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium
necrophorum subsp. funduliforme ATCC 51357]
gi|313687543|gb|EFS24378.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium sp.
D12]
gi|386905031|gb|EIJ69812.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium
necrophorum subsp. funduliforme ATCC 51357]
Length = 432
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 54/82 (65%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
EG++ +Q+ S + A L + GE +LD C+APGGKT+ +A +++EG+++++D +K+
Sbjct: 219 EGKMIVQDAASYLAAKNLGAKAGEIVLDTCSAPGGKTSVLAEEMKNEGQILSLDIHTHKI 278
Query: 300 MDIQKLAAEMGLKCITTYKLDA 321
IQ+ ++G+ + KLDA
Sbjct: 279 KLIQENCKKLGITIVQAVKLDA 300
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 8/71 (11%)
Query: 426 FDRVLLDAPCSALGLRPR----LFAAE-ETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
FDR+L+DAPCS G+ + L+ + E I L QR + A ++++ GG +VY
Sbjct: 310 FDRILVDAPCSGYGVLAKKPEGLYTKKPENIGELVI---LQREILASAAEVLKVGGEMVY 366
Query: 481 STCTINPGENE 491
STCTI P EN+
Sbjct: 367 STCTILPQENQ 377
>gi|152149576|pdb|2B9E|A Chain A, Human Nsun5 Protein
Length = 309
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 68/136 (50%), Gaps = 8/136 (5%)
Query: 194 YFERSGL-YIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVLE------GEIFLQ 246
YF+R G Y G+ +++ + + + + + P+ D+ E G + LQ
Sbjct: 29 YFKRQGFSYQGRASSLDDLRAL-KGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHLILQ 87
Query: 247 NLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLA 306
+ S + A LDP G ++D CAAPG KT+ +A+LL+++G++ A D ++ + L
Sbjct: 88 DRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLL 147
Query: 307 AEMGLKCITTYKLDAL 322
A G+ C + D L
Sbjct: 148 ARAGVSCCELAEEDFL 163
>gi|328950272|ref|YP_004367607.1| RNA methylase [Marinithermus hydrothermalis DSM 14884]
gi|328450596|gb|AEB11497.1| RNA methylase, NOL1/NOP2/sun family [Marinithermus hydrothermalis
DSM 14884]
Length = 450
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 47/78 (60%), Gaps = 14/78 (17%)
Query: 426 FDRVLLDAPCSALGLRPRLFAAEETIQSLRNHG--------KYQRRMFDQAVQLVRPGGI 477
FDRV+LDAPCS G+ + +++R+ G + QRR+ A LVRPGG+
Sbjct: 172 FDRVVLDAPCSGEGM------FRKDPEAVRHWGPGSPARASRIQRRLILAAAALVRPGGV 225
Query: 478 IVYSTCTINPGENEALCA 495
+VY+TCT P ENEA+ A
Sbjct: 226 LVYATCTFAPEENEAVVA 243
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 219 EGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTA 278
EG R P FY G ++Q + P+ GER+LD+ AAPGGKTT
Sbjct: 63 EGFYYPPEARPGPHPYFY---AGLYYIQEPSAQAVGVLAAPKPGERVLDLAAAPGGKTTH 119
Query: 279 IASLLRDEGEVVA--VD--RSHNKVMDIQKLAAEMGL 311
+A+ ++ +G ++A VD R + ++++ A + +
Sbjct: 120 LAARMQGQGLLIANEVDGRRVRGLLENVERWGARLAV 156
>gi|16329552|ref|NP_440280.1| Fmu and Fmv protein [Synechocystis sp. PCC 6803]
gi|383321293|ref|YP_005382146.1| Fmu and Fmv protein [Synechocystis sp. PCC 6803 substr. GT-I]
gi|383324463|ref|YP_005385316.1| Fmu and Fmv protein [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|383490347|ref|YP_005408023.1| Fmu and Fmv protein [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|384435613|ref|YP_005650337.1| Fmu and Fmv protein [Synechocystis sp. PCC 6803]
gi|451813711|ref|YP_007450163.1| Fmu and Fmv protein [Synechocystis sp. PCC 6803]
gi|2500952|sp|P72943.1|RSMB_SYNY3 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|1652035|dbj|BAA16960.1| Fmu and Fmv protein [Synechocystis sp. PCC 6803]
gi|339272645|dbj|BAK49132.1| Fmu and Fmv protein [Synechocystis sp. PCC 6803]
gi|359270612|dbj|BAL28131.1| Fmu and Fmv protein [Synechocystis sp. PCC 6803 substr. GT-I]
gi|359273783|dbj|BAL31301.1| Fmu and Fmv protein [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|359276953|dbj|BAL34470.1| Fmu and Fmv protein [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|407957432|dbj|BAM50672.1| Fmu and Fmv protein [Synechocystis sp. PCC 6803]
gi|451779680|gb|AGF50649.1| Fmu and Fmv protein [Synechocystis sp. PCC 6803]
Length = 446
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 51/92 (55%), Gaps = 3/92 (3%)
Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
I QLP F EG +Q+ + A L+PQ E I D+CAAPGGKTT IA L+ D+G+
Sbjct: 223 ITQLPGFA---EGWWTVQDASAQWVAQILNPQPEETIFDVCAAPGGKTTHIAELMGDQGQ 279
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
+ A DR ++ + +GL I ++ D
Sbjct: 280 IYAGDRHGWRLQKLAVTQQRLGLTSIKIWEGD 311
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 427 DRVLLDAPCSALGLRPRL--FAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCT 484
DR LLD PCS LG R +T ++ Q+ + LV+ GG +VYSTCT
Sbjct: 325 DRALLDVPCSGLGTLHRNPDLRWRQTPATIATLLPLQQALLKAIAPLVKSGGTLVYSTCT 384
Query: 485 INPGENEA 492
+NP ENEA
Sbjct: 385 LNPAENEA 392
>gi|390459010|ref|XP_002743979.2| PREDICTED: putative methyltransferase NSUN5 isoform 1 [Callithrix
jacchus]
Length = 466
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 70/138 (50%), Gaps = 12/138 (8%)
Query: 194 YFERSGLYIGQGTAMMSRAGIFRASEG---IAVDMHNRIFQLPSFYDVLE------GEIF 244
YF+R G + QG A S A RA +G + + + P+ D+ E G +
Sbjct: 153 YFKRKG-FSYQGRA--SSADDLRALKGKRFLLDPVVPELLAFPAQTDLHEHPLYRAGHLI 209
Query: 245 LQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQK 304
LQ+ S + A LDP G ++D CAAPG KT+ +A+LL+++G++ A D ++ +
Sbjct: 210 LQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLSSMAT 269
Query: 305 LAAEMGLKCITTYKLDAL 322
L A G+ C + D L
Sbjct: 270 LLARAGVSCCELAEDDFL 287
>gi|227890677|ref|ZP_04008482.1| 16S rRNA m(5)C 967 methyltransferase [Lactobacillus salivarius ATCC
11741]
gi|227867615|gb|EEJ75036.1| 16S rRNA m(5)C 967 methyltransferase [Lactobacillus salivarius ATCC
11741]
Length = 445
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 62/96 (64%), Gaps = 2/96 (2%)
Query: 232 LPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIA-SLLRDEGEVV 290
LP + G++ +Q+ +++ ++D QK + +LD CAAPGGKTT IA L++ EG+V
Sbjct: 222 LPKSSEFRNGKMIIQDESAMLAVESMDIQKDDIVLDACAAPGGKTTQIAEKLMKGEGKVW 281
Query: 291 AVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDALKAV 325
A+D +KV I++ A ++GL I+ +LDA KA+
Sbjct: 282 ALDIHKHKVKLIEENANKLGLISKISAKQLDARKAI 317
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F FD++L+DAPCS LGL +P + ++ S H Q + ++ L++ GG
Sbjct: 320 FDSEKFDKILVDAPCSGLGLMRRKPEVKYEKKLADSYSLHD-IQVNILEKVAPLLKKGGY 378
Query: 478 IVYSTCTINPGENEALC 494
+ YSTCTI EN+ +
Sbjct: 379 LTYSTCTILNIENQKVI 395
>gi|193785163|dbj|BAG54316.1| unnamed protein product [Homo sapiens]
Length = 391
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 68/136 (50%), Gaps = 8/136 (5%)
Query: 194 YFERSGL-YIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVLE------GEIFLQ 246
YF+R G Y G+ +++ + + + + + P+ D+ E G + LQ
Sbjct: 115 YFKRQGFSYQGRASSLDDLRAL-KGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHLILQ 173
Query: 247 NLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLA 306
+ S + A LDP G ++D CAAPG KT+ +A+LL+++G++ A D ++ + L
Sbjct: 174 DRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLL 233
Query: 307 AEMGLKCITTYKLDAL 322
A G+ C + D L
Sbjct: 234 ARAGVSCCELAEEDFL 249
>gi|402297531|ref|ZP_10817298.1| 16S rRNA methyltransferase B [Bacillus alcalophilus ATCC 27647]
gi|401727206|gb|EJT00399.1| 16S rRNA methyltransferase B [Bacillus alcalophilus ATCC 27647]
Length = 448
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 47/76 (61%)
Query: 246 QNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKL 305
Q+ S++ A AL P+ GE ILD CAAPGGK+T IA L+ +EG +++VD +KV I++
Sbjct: 236 QDESSMLVAKALGPKAGEHILDSCAAPGGKSTHIAELMNNEGSLLSVDLHEHKVQLIREQ 295
Query: 306 AAEMGLKCITTYKLDA 321
A + L I D
Sbjct: 296 AKRLDLSMIEVVAADV 311
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 53/88 (60%), Gaps = 10/88 (11%)
Query: 415 AENSKGFS----PNSFDRVLLDAPCSALGL---RPRL-FAAEETIQSLRNHGKYQRRMFD 466
A + + FS SFD +LLDAPCS LG+ +P + +A +E+ +++ + Q + +
Sbjct: 308 AADVRAFSQKTPAQSFDAILLDAPCSGLGVIRRKPDIKWAKKES--DIQDIAEIQAMILE 365
Query: 467 QAVQLVRPGGIIVYSTCTINPGENEALC 494
L++ GG +VYSTCTI+ ENEA+
Sbjct: 366 AVAPLLKKGGRLVYSTCTIDQEENEAIV 393
>gi|333910084|ref|YP_004483817.1| RNA methylase [Methanotorris igneus Kol 5]
gi|333750673|gb|AEF95752.1| RNA methylase, NOL1/NOP2/sun family [Methanotorris igneus Kol 5]
Length = 264
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 58/104 (55%), Gaps = 13/104 (12%)
Query: 232 LPSFYDVLE-------------GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTA 278
LP ++VLE G F+Q++ S++ L+P K + +LDMCAAPGGKTT
Sbjct: 34 LPYAFEVLESPFSVGATPEYLFGYYFVQSISSMIPPIVLNPSKDDLVLDMCAAPGGKTTH 93
Query: 279 IASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322
+A L+ +EG ++AV+ +++ ++ MG+ + ++ L
Sbjct: 94 LAQLMNNEGAIIAVEIKSSRMKSLKANINRMGIANVIMLNMNVL 137
Score = 45.8 bits (107), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 6/61 (9%)
Query: 426 FDRVLLDAPCS--ALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTC 483
FD++LLDAPCS + + R E+ I Q+ + D + L++ GG++VYSTC
Sbjct: 146 FDKILLDAPCSGNVIKDKSRSVTKEDIIYC----SNRQKELIDAGIDLLKEGGVLVYSTC 201
Query: 484 T 484
+
Sbjct: 202 S 202
>gi|218202330|gb|EEC84757.1| hypothetical protein OsI_31764 [Oryza sativa Indica Group]
Length = 570
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 425 SFDRVLLDAPCSALGLRPRL--FAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYST 482
+FD+VLLDAPCS LG+ + + L Q + D A LV+PGGI+VYST
Sbjct: 447 TFDKVLLDAPCSGLGVLSKRADLRWNRQFEDLEELMCLQDELLDSASMLVKPGGILVYST 506
Query: 483 CTINPGENE 491
C+I+P ENE
Sbjct: 507 CSIDPEENE 515
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 8/83 (9%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
EG +Q+ + + +DPQ GE I+D CAAPGGKT +A+ L +G++ A
Sbjct: 355 EGMCAVQDESAGLVVSVVDPQPGETIIDCCAAPGGKTLFMAARLSGQGKIWA-------- 406
Query: 300 MDIQKLAAEMGLKCITTYKLDAL 322
+DI K + ++ + LDA+
Sbjct: 407 LDINKGRLRILMEAAKLHNLDAM 429
>gi|146312051|ref|YP_001177125.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Enterobacter sp. 638]
gi|167012767|sp|A4WBJ4.1|RSMF_ENT38 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|145318927|gb|ABP61074.1| 16S rRNA m(5)C-1407 methyltransferase [Enterobacter sp. 638]
Length = 480
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 45/80 (56%), Gaps = 14/80 (17%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--------GKYQRRMFDQAVQLVRP 474
P SFD +LLDAPCS G+ + +L+N QR + D A +RP
Sbjct: 185 PESFDAILLDAPCSGEGV------VRKDPDALKNWSVASNLEIAATQRELIDSAFHALRP 238
Query: 475 GGIIVYSTCTINPGENEALC 494
GG++VYSTCT+N ENE++C
Sbjct: 239 GGMLVYSTCTLNRDENESVC 258
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 239 LEGEIFLQNLPSI--VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296
L G ++Q S+ VTA + + ER++D+ AAPG KTT IA+ + + G ++A + S
Sbjct: 93 LSGLFYIQEASSMLPVTALFAEDNQPERVMDVAAAPGSKTTQIAARMGNRGVILANEFSA 152
Query: 297 NKVMDIQKLAAEMGLKCITTYKLD 320
++V + + G+ + D
Sbjct: 153 SRVKVLHANISRCGISNVALTHFD 176
>gi|407698282|ref|YP_006823069.1| 16S rRNA methyltransferase B [Alteromonas macleodii str. 'Black Sea
11']
gi|407247429|gb|AFT76614.1| 16S rRNA methyltransferase B [Alteromonas macleodii str. 'Black Sea
11']
Length = 439
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 55/103 (53%), Gaps = 12/103 (11%)
Query: 396 KNMRRMRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLR 455
+NM R+++ Q G A + FDR+LLDAPCSA G+ R I+ LR
Sbjct: 293 ENMTRLKHTVDIKQ--GDAANPETWWDGKPFDRILLDAPCSATGVIRR----HPDIRWLR 346
Query: 456 ------NHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEA 492
N + QRR+ D L++PGG ++Y+TC+I P EN A
Sbjct: 347 KASDIDNLAQLQRRILDTLWGLLKPGGTLLYATCSILPKENMA 389
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 8/104 (7%)
Query: 206 TAMMSRAGI-FRASE----GIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQ 260
T + +AG+ + SE + + I LP F +G +Q+ + + AH L PQ
Sbjct: 193 TQALDKAGVEYTLSENHADAVILTKREDITALPGFE---KGHFAVQDGAAQLAAHYLKPQ 249
Query: 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQK 304
ERILD CAAPGGKT I D V+A+D ++ +++
Sbjct: 250 ANERILDCCAAPGGKTGHIVECAPDTEYVLALDADATRLKRVEE 293
>gi|373857268|ref|ZP_09600010.1| sun protein [Bacillus sp. 1NLA3E]
gi|372452918|gb|EHP26387.1| sun protein [Bacillus sp. 1NLA3E]
Length = 449
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 421 FSPNSFDRVLLDAPCSALGLRPRL--FAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGII 478
F+P SFD++LLDAPCS LG+ R + ++ L Q +F L++ GGI+
Sbjct: 320 FAPESFDKILLDAPCSGLGVMRRKPDMKYTKKVEDLNKLQVIQTDLFSSVAPLLKKGGIL 379
Query: 479 VYSTCTINPGENEALC 494
VYSTCTI+ EN +
Sbjct: 380 VYSTCTIDKEENSTVV 395
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 50/85 (58%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G +Q+ S++ A+AL +R+LD CAAPGGK+T IA L G VV++D +KV
Sbjct: 232 DGLFTIQDESSMLVAYALGISLNDRVLDACAAPGGKSTHIAERLDHTGAVVSLDLHEHKV 291
Query: 300 MDIQKLAAEMGLKCITTYKLDALKA 324
I + A +GL I T LD+ K
Sbjct: 292 KLISESAKRLGLNNIETKALDSRKV 316
>gi|229581588|ref|YP_002839987.1| RNA methylase [Sulfolobus islandicus Y.N.15.51]
gi|228012304|gb|ACP48065.1| RNA methylase, NOL1/NOP2/sun family [Sulfolobus islandicus
Y.N.15.51]
Length = 339
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 70/130 (53%), Gaps = 10/130 (7%)
Query: 208 MMSRAGIFRASEGIAVDMHNRIFQ----LPSFYDVLE---GEIFLQNLPSIVTAHALDPQ 260
MMS G E + H I + +PS LE G +Q L S+V A+ L+P
Sbjct: 81 MMSEKGFIL--EKVKWLQHGYIIKRTPPMPSLGSTLEYLMGYYHIQGLASMVPAYVLNPS 138
Query: 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
+ + +LDM AAPGGKTT ++ +++++G VVAV++ +++ + +G + + K D
Sbjct: 139 QDDFVLDMAAAPGGKTTQVSQIMQNKGLVVAVEKKRSRIRALLSNVNRLGAENVVLVKTD 198
Query: 321 ALKAVRRKNE 330
L +RR N+
Sbjct: 199 VLN-LRRINK 207
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 417 NSKGFSPNSFDRVLLDAPCSALGLRPR--LFAAEETIQSLRNHGKYQRRMFDQAVQLVRP 474
N + + FDR+LLDAPCS GL + + TI LR+ Q + + A +L++
Sbjct: 201 NLRRINKFQFDRILLDAPCSGEGLIQKDPTRRYKTTIDDLRDFAYSQLSLIEIAYELLKE 260
Query: 475 GGIIVYSTCTINPGENEAL 493
GG IVYSTC++ P ENE +
Sbjct: 261 GGYIVYSTCSVAPEENELI 279
>gi|115479747|ref|NP_001063467.1| Os09g0477900 [Oryza sativa Japonica Group]
gi|52077347|dbj|BAD46388.1| sunL protein-like [Oryza sativa Japonica Group]
gi|113631700|dbj|BAF25381.1| Os09g0477900 [Oryza sativa Japonica Group]
gi|222641777|gb|EEE69909.1| hypothetical protein OsJ_29754 [Oryza sativa Japonica Group]
Length = 570
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 425 SFDRVLLDAPCSALGLRPRL--FAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYST 482
+FD+VLLDAPCS LG+ + + L Q + D A LV+PGGI+VYST
Sbjct: 447 TFDKVLLDAPCSGLGVLSKRADLRWNRQFEDLEELMCLQDELLDSASMLVKPGGILVYST 506
Query: 483 CTINPGENE 491
C+I+P ENE
Sbjct: 507 CSIDPEENE 515
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 8/83 (9%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
EG +Q+ + + +DPQ GE I+D CAAPGGKT +A+ L +G++ A
Sbjct: 355 EGMCAVQDESAGLVVSVVDPQPGETIIDCCAAPGGKTLFMAARLSGQGKIWA-------- 406
Query: 300 MDIQKLAAEMGLKCITTYKLDAL 322
+DI K + ++ + LDA+
Sbjct: 407 LDINKGRLRILMEAAKLHNLDAM 429
>gi|448502993|ref|ZP_21612857.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum coriense
DSM 10284]
gi|445693395|gb|ELZ45547.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum coriense
DSM 10284]
Length = 315
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 54/104 (51%), Gaps = 5/104 (4%)
Query: 223 VDMHNRIFQLPS-----FYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTT 277
V H+ +F+LP + + G Q S++ ALDP+ GER+ D CAAPG KTT
Sbjct: 55 VGWHDGLFRLPDGNPGGNWPYVHGWTHGQEEVSVLPTLALDPEPGERVWDACAAPGSKTT 114
Query: 278 AIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
IA + DEG VVA D + ++ ++ A +G+ DA
Sbjct: 115 QIADAMDDEGTVVANDNNLGRLSALRHNAERLGITNAIVTNQDA 158
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 4/83 (4%)
Query: 414 RAENSKGFSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQ 470
R ++K + + FDR L+DAPCS G P + + T+ + Q+ + +AVQ
Sbjct: 159 RNFSTKPLAFDEFDRALVDAPCSCEGTCRKNPDVLD-QWTLDHVHAVAGIQKGVLARAVQ 217
Query: 471 LVRPGGIIVYSTCTINPGENEAL 493
RPGG++VYSTCT P ENEA+
Sbjct: 218 ATRPGGVVVYSTCTFAPEENEAV 240
>gi|54309113|ref|YP_130133.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Photobacterium
profundum SS9]
gi|46913545|emb|CAG20331.1| putative sun/nucleolar protein family protein [Photobacterium
profundum SS9]
Length = 484
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Query: 420 GFSPNSFDRVLLDAPCSALG-LRPRLFA-AEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
G++P SFD +LLDAPCS G +R A A ++ S+ + QR + A Q ++ GG+
Sbjct: 189 GWAPESFDTILLDAPCSGEGAIRKDGDAMANWSLSSIEDIAAIQRNLIISAFQALKTGGM 248
Query: 478 IVYSTCTINPGENEALC 494
+VYSTCT+N EN+ +C
Sbjct: 249 MVYSTCTLNLSENQHVC 265
>gi|422344990|ref|ZP_16425913.1| ribosomal RNA small subunit methyltransferase B [Selenomonas noxia
F0398]
gi|355376132|gb|EHG23393.1| ribosomal RNA small subunit methyltransferase B [Selenomonas noxia
F0398]
Length = 448
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 55/103 (53%), Gaps = 3/103 (2%)
Query: 219 EGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTA 278
EG+ + H + L + EG +Q S++ AH L P+ G ++D CAAPGGKTT
Sbjct: 219 EGVILRAHGALNVLAPLH---EGLAQVQGESSMLVAHVLAPEPGMTVIDACAAPGGKTTH 275
Query: 279 IASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
IA + + G ++A D K+ I++ A + + I T LDA
Sbjct: 276 IAQRMENRGRILAFDIYEEKIRRIERNAKRLSVSIIETAVLDA 318
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 427 DRVLLDAPCSALGLRPRLFAAE--ETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCT 484
DRVL+DAPCS LG+ R A ++ + QR + A Q VR GG++VYSTCT
Sbjct: 330 DRVLVDAPCSGLGVLRRKPDARWRKSASDRKTLPPLQREILASAAQAVRKGGVLVYSTCT 389
Query: 485 INPGENEAL 493
+ EN A+
Sbjct: 390 MEDCENTAV 398
>gi|188585963|ref|YP_001917508.1| sun protein [Natranaerobius thermophilus JW/NM-WN-LF]
gi|179350650|gb|ACB84920.1| sun protein [Natranaerobius thermophilus JW/NM-WN-LF]
Length = 462
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 47/82 (57%), Gaps = 7/82 (8%)
Query: 414 RAENSKGFSPNSFDRVLLDAPCSALGL---RPRL-FAAEETIQSLRNHGKYQRRMFDQAV 469
+ EN+K FD L+DAPCS LG RP L + E Q L + Q ++
Sbjct: 323 QQENNKQLK-GQFDLCLIDAPCSGLGTLRKRPELKWTISE--QDLNSLSTLQGKLLKAGS 379
Query: 470 QLVRPGGIIVYSTCTINPGENE 491
QLV+PGG +VYSTCTINP ENE
Sbjct: 380 QLVKPGGTLVYSTCTINPQENE 401
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 56/94 (59%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G +Q++ S+V +H DPQ+G+ I+D+C+APG KTT + L+ +G ++AVD +++
Sbjct: 235 GYFQVQDINSMVVSHLCDPQQGDNIIDLCSAPGSKTTHLVQLIDGQGSILAVDIHEHRLK 294
Query: 301 DIQKLAAEMGLKCITTYKLDALKAVRRKNESNDE 334
+++ + + + + D K + R + N++
Sbjct: 295 LVKEACRRLQVNNVNVKQADGTKLISRDQQENNK 328
>gi|424779926|ref|ZP_18206812.1| Ribosomal RNA small subunit methyltransferase B [Catellicoccus
marimammalium M35/04/3]
gi|422843465|gb|EKU27902.1| Ribosomal RNA small subunit methyltransferase B [Catellicoccus
marimammalium M35/04/3]
Length = 452
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 421 FSPNSFDRVLLDAPCSALGLRPRL--FAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGII 478
F+ SFDR+L+DAPCS LGL R ++I L Q ++ + ++ GGI+
Sbjct: 326 FAKESFDRILVDAPCSGLGLMRRKPDIKYSKSITDLSRLSTIQLQILNACAPCLKQGGIM 385
Query: 479 VYSTCTINPGENEAL 493
VYSTCTIN ENEA+
Sbjct: 386 VYSTCTINKEENEAV 400
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 50/87 (57%), Gaps = 3/87 (3%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLL--RDEGEVVAVDRSHN 297
EG I +Q+ S++ A AL + ++LD CAAPGGKT IAS L G+V A+D +
Sbjct: 235 EGRITIQDESSMLVAPALQVEPQHQVLDACAAPGGKTGHIASYLDATQGGKVTALDIHQH 294
Query: 298 KVMDIQKLAAEMGLKC-ITTYKLDALK 323
K I++ AA + + +T LDA K
Sbjct: 295 KCELIEETAARLHVTDRVTAQTLDARK 321
>gi|298712110|emb|CBJ32991.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 605
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Query: 237 DVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVD--- 293
+ L G LQ+ S+ AL PQ+GER+LDM AAPGGK+T IA L+R+ G V+A D
Sbjct: 434 EYLAGHYMLQSAASMCPVMALAPQQGERVLDMSAAPGGKSTYIAQLMRNTGVVIANDLRP 493
Query: 294 -RSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRR 327
R V ++ +L L C + K V R
Sbjct: 494 QRQRATVANLHRLGVRNALVCCHDGRKIPFKGVDR 528
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 46/90 (51%), Gaps = 11/90 (12%)
Query: 410 CLGGRAENSKGFSPNSFDRVLLDAPCSALGL--RPRLFAAEETIQSLRNHGKYQRRMFDQ 467
C GR KG DRVLLDAPCS LG+ R + + T + + Q+ +
Sbjct: 515 CHDGRKIPFKGV-----DRVLLDAPCSGLGVISRDQSVKIQRTTKDILRSSHLQKELLCA 569
Query: 468 AVQLVRP----GGIIVYSTCTINPGENEAL 493
AV V GG+IVYSTC+++ ENE L
Sbjct: 570 AVDAVSAKSATGGVIVYSTCSVSVAENEQL 599
>gi|406595021|ref|YP_006746151.1| 16S rRNA methyltransferase B [Alteromonas macleodii ATCC 27126]
gi|406372342|gb|AFS35597.1| 16S rRNA methyltransferase B [Alteromonas macleodii ATCC 27126]
Length = 439
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 55/103 (53%), Gaps = 12/103 (11%)
Query: 396 KNMRRMRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLR 455
+NM R+++ Q G A + FDR+LLDAPCSA G+ R I+ LR
Sbjct: 293 ENMTRLKHTVDIKQ--GDAANPDTWWDGKPFDRILLDAPCSATGVIRR----HPDIRWLR 346
Query: 456 ------NHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEA 492
N + QRR+ D L++PGG ++Y+TC+I P EN A
Sbjct: 347 KANDIDNLAQLQRRILDTLWGLLKPGGTLLYATCSILPKENMA 389
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 53/104 (50%), Gaps = 8/104 (7%)
Query: 206 TAMMSRAGI---FRASEGIAVDMHNR--IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQ 260
T + +AG+ A+ AV + R I LP F +G +Q+ + + AH L PQ
Sbjct: 193 TQALDKAGVEYTLSANHADAVILTKRVDITALPGFE---KGHFAVQDGAAQLAAHYLKPQ 249
Query: 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQK 304
ERILD CAAPGGKT I D V+A+D ++ +++
Sbjct: 250 ANERILDCCAAPGGKTGHIVECAPDTQYVLALDADATRLKRVEE 293
>gi|270288816|ref|NP_001161819.1| putative methyltransferase NSUN5 isoform 3 [Homo sapiens]
gi|194389950|dbj|BAG60491.1| unnamed protein product [Homo sapiens]
Length = 470
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 70/139 (50%), Gaps = 14/139 (10%)
Query: 194 YFERSGL-YIGQGTAMMSRAGIFRASEG---IAVDMHNRIFQLPSFYDVLE------GEI 243
YF+R G Y G+ +++ RA +G + + + P+ D+ E G +
Sbjct: 153 YFKRQGFSYQGRASSLDD----LRALKGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHL 208
Query: 244 FLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQ 303
LQ+ S + A LDP G ++D CAAPG KT+ +A+LL+++G++ A D ++ +
Sbjct: 209 ILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMA 268
Query: 304 KLAAEMGLKCITTYKLDAL 322
L A G+ C + D L
Sbjct: 269 TLLARAGVSCCELAEEDFL 287
>gi|146325695|sp|Q6LQU5.2|RSMF_PHOPR RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
Length = 476
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Query: 420 GFSPNSFDRVLLDAPCSALG-LRPRLFA-AEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
G++P SFD +LLDAPCS G +R A A ++ S+ + QR + A Q ++ GG+
Sbjct: 181 GWAPESFDTILLDAPCSGEGAIRKDGDAMANWSLSSIEDIAAIQRNLIISAFQALKTGGM 240
Query: 478 IVYSTCTINPGENEALC 494
+VYSTCT+N EN+ +C
Sbjct: 241 MVYSTCTLNLSENQHVC 257
>gi|284165311|ref|YP_003403590.1| RNA methylase [Haloterrigena turkmenica DSM 5511]
gi|284014966|gb|ADB60917.1| RNA methylase, NOL1/NOP2/sun family [Haloterrigena turkmenica DSM
5511]
Length = 302
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 60/115 (52%), Gaps = 16/115 (13%)
Query: 219 EGIA---VDMHNRIFQLP---------SFYDVLEGEIFLQNLPSIVTAHALDPQKGERIL 266
EG+A D + R+ +L SF+ G+ + +P +V LDPQ GER+
Sbjct: 48 EGLAYEQADWNPRVLRLETGSPGSTWTSFHGFTHGQEEVSAVPPVV----LDPQPGERVW 103
Query: 267 DMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
D CAAPGGK T +A+L+ DEG VVA D + ++ ++ A +G + DA
Sbjct: 104 DSCAAPGGKATQLAALMGDEGTVVANDNNLGRISALRFNAERLGATSLAVTNADA 158
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLF--AAEETIQSLRNHGKYQRRMFDQAVQLVRPG 475
F + FDR L+DAPC+ G P +E I S+ Q+ + +A+Q R G
Sbjct: 166 FDFDEFDRALVDAPCTCEGTIRKNPDTLDNWSEGAIASVSG---VQKGILRRAIQATREG 222
Query: 476 GIIVYSTCTINPGENEAL 493
G +VYSTCT P ENEA+
Sbjct: 223 GTVVYSTCTFAPEENEAV 240
>gi|270288818|ref|NP_001161820.1| putative methyltransferase NSUN5 isoform 4 [Homo sapiens]
gi|119590100|gb|EAW69694.1| hCG39703, isoform CRA_c [Homo sapiens]
Length = 391
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 68/136 (50%), Gaps = 8/136 (5%)
Query: 194 YFERSGL-YIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVLE------GEIFLQ 246
YF+R G Y G+ +++ + + + + + P+ D+ E G + LQ
Sbjct: 115 YFKRQGFSYQGRASSLDDLRAL-KGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHLILQ 173
Query: 247 NLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLA 306
+ S + A LDP G ++D CAAPG KT+ +A+LL+++G++ A D ++ + L
Sbjct: 174 DRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLL 233
Query: 307 AEMGLKCITTYKLDAL 322
A G+ C + D L
Sbjct: 234 ARAGVSCCELAEEDFL 249
>gi|420156785|ref|ZP_14663625.1| ribosomal RNA small subunit methyltransferase B [Clostridium sp.
MSTE9]
gi|394756795|gb|EJF39854.1| ribosomal RNA small subunit methyltransferase B [Clostridium sp.
MSTE9]
Length = 447
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 49/82 (59%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
EG +Q+L S + +DPQ GERI+D+CAAPGGK+ +A + + GE++A D+ KV
Sbjct: 233 EGLFHIQDLSSQLCCALIDPQPGERIIDVCAAPGGKSFTMAERMENRGELLAFDKYRGKV 292
Query: 300 MDIQKLAAEMGLKCITTYKLDA 321
I++ A +G I DA
Sbjct: 293 GLIRQGAERLGFSVIRASVRDA 314
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 53/85 (62%), Gaps = 9/85 (10%)
Query: 415 AENSKGFSPNSFDRVLLDAPCSALGL---RPRL-FAAEETIQSLRNHGKYQRRMFDQAVQ 470
AE + +P +RVL DAPCS LG+ +P + + ++++ SL + Q + ++
Sbjct: 315 AEPKEVLAPA--NRVLCDAPCSGLGIIRRKPEIRYKPQDSLDSLPD---LQYLILCRSSG 369
Query: 471 LVRPGGIIVYSTCTINPGENEALCA 495
LV PGG++ YSTCT+NP EN+A+ A
Sbjct: 370 LVEPGGLLFYSTCTLNPAENDAVAA 394
>gi|317131030|ref|YP_004090344.1| RNA methylase [Ethanoligenens harbinense YUAN-3]
gi|315469009|gb|ADU25613.1| RNA methylase, NOL1/NOP2/sun family [Ethanoligenens harbinense
YUAN-3]
Length = 471
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 423 PNSFDRVLLDAPCSALGL--RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
P FD VL+DAPCS G+ R AAE T ++ + QR + D A +RPGG++VY
Sbjct: 183 PGFFDAVLVDAPCSGEGMFRREPAAAAEWTPETPAACARRQRAILDWAKTALRPGGVLVY 242
Query: 481 STCTINPGENEALCA 495
STCT P ENE + A
Sbjct: 243 STCTFAPEENECVVA 257
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 36/51 (70%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVA 291
G +LQ ++ ALDP+ G+R+LD+CAAPGGK+T IA+ L +G +VA
Sbjct: 95 GVFYLQEPSAMSAVTALDPRPGQRVLDLCAAPGGKSTQIAARLGGQGLLVA 145
>gi|116788313|gb|ABK24833.1| unknown [Picea sitchensis]
Length = 515
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 46/68 (67%), Gaps = 4/68 (5%)
Query: 427 DRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTC 483
D+VLLDAPCS LG+ +P + + T++ L Q + D A LV+PGGI+VYSTC
Sbjct: 437 DKVLLDAPCSGLGVLCKKPDM-RWKRTLKDLEQLILLQDELLDAASLLVKPGGILVYSTC 495
Query: 484 TINPGENE 491
+++PGEN+
Sbjct: 496 SVDPGENK 503
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 49/85 (57%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
EG +Q+ + + +DPQ GE I+D CAAPGGK +AS L+ +G V+A+D + ++
Sbjct: 343 EGMCAVQDEGAGLVVSVVDPQPGETIIDCCAAPGGKALFMASRLQGQGSVIAIDVNQGRL 402
Query: 300 MDIQKLAAEMGLKCITTYKLDALKA 324
+++ A L+ + D +++
Sbjct: 403 RVLEEAAKVQALEGVVNACQDDIRS 427
>gi|150402304|ref|YP_001329598.1| NOL1/NOP2/sun family RNA methylase [Methanococcus maripaludis C7]
gi|150033334|gb|ABR65447.1| putative RNA methylase, NOL1/NOP2/sun family [Methanococcus
maripaludis C7]
Length = 265
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 71/124 (57%), Gaps = 4/124 (3%)
Query: 230 FQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEV 289
F + S + L G FLQ++ SI+ + L+P K + +LDMCAAPGGKTT +A L+ +EG +
Sbjct: 46 FSMGSTPEYLLGYYFLQSISSIIPSITLNPSKDDDVLDMCAAPGGKTTHLAQLMENEGSI 105
Query: 290 VAVDRSHNKVMDIQKLAAEMGLK---CITTYKLDALKAVRRKNESNDEPNMCNS-KDNNY 345
+AV+ + N++ ++ MG K I T ++ K +R D P N KD+N
Sbjct: 106 LAVEINKNRLKSLRSNINRMGFKNTLMINTNAVNLDKKLRFDKILLDAPCTGNEIKDSNR 165
Query: 346 ITSQ 349
+ ++
Sbjct: 166 VKTK 169
Score = 42.4 bits (98), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 426 FDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTI 485
FD++LLDAPC+ ++ +T + + K Q +F A+++++ GG +VYSTC+
Sbjct: 146 FDKILLDAPCTGNEIKDS--NRVKTKRDILFCAKRQVELFRTAIEVLKDGGELVYSTCSP 203
Query: 486 NPGENEALC 494
E+E +
Sbjct: 204 EIEEDEDIV 212
>gi|148906361|gb|ABR16335.1| unknown [Picea sitchensis]
Length = 558
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 46/68 (67%), Gaps = 4/68 (5%)
Query: 427 DRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTC 483
D+VLLDAPCS LG+ +P + + T++ L Q + D A LV+PGGI+VYSTC
Sbjct: 437 DKVLLDAPCSGLGVLCKKPDM-RWKRTLKDLEQLILLQDELLDAASLLVKPGGILVYSTC 495
Query: 484 TINPGENE 491
+++PGEN+
Sbjct: 496 SVDPGENK 503
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 49/85 (57%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
EG +Q+ + + +DPQ GE I+D CAAPGGK +AS L+ +G V+A+D + ++
Sbjct: 343 EGMCAVQDEGAGLVVSVVDPQPGETIIDCCAAPGGKALFMASRLQGQGSVIAIDVNQGRL 402
Query: 300 MDIQKLAAEMGLKCITTYKLDALKA 324
+++ A L+ + D +++
Sbjct: 403 RVLEEAAKVQALEGVVNACQDDIRS 427
>gi|313894854|ref|ZP_07828414.1| ribosomal RNA small subunit methyltransferase B [Selenomonas sp.
oral taxon 137 str. F0430]
gi|312976535|gb|EFR41990.1| ribosomal RNA small subunit methyltransferase B [Selenomonas sp.
oral taxon 137 str. F0430]
Length = 451
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 55/103 (53%), Gaps = 3/103 (2%)
Query: 219 EGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTA 278
+GI V H L + + EG +Q+ S++ AH L G ++D CAAPGGKTT
Sbjct: 222 DGIVVTSHG---TLDALAPLREGLCQVQDESSMLVAHVLGAAPGMTVIDACAAPGGKTTH 278
Query: 279 IASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
IA + + G++ A D K+ I+ A +G+ I T+ LDA
Sbjct: 279 IAQRMENRGKIYAFDVYEGKIARIENNARRLGIDIIETWMLDA 321
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 427 DRVLLDAPCSALGLRPRLFAAE--ETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCT 484
DRVL+DAPCS G+ R A + L K Q+ + A VRPGG +VYSTCT
Sbjct: 333 DRVLIDAPCSGFGVLRRKPDARWRRKPEELGALPKLQQEILAGAAAAVRPGGALVYSTCT 392
Query: 485 INPGENEAL 493
+ ENE +
Sbjct: 393 METAENEGV 401
>gi|89098704|ref|ZP_01171586.1| sun protein [Bacillus sp. NRRL B-14911]
gi|89086666|gb|EAR65785.1| sun protein [Bacillus sp. NRRL B-14911]
Length = 448
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 56/96 (58%), Gaps = 8/96 (8%)
Query: 226 HNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRD 285
H+R F+ EG + +Q+ S++ A+AL +K +LD CAAPGGKTT IA L +
Sbjct: 224 HSRAFK--------EGYLSIQDESSMLAAYALGAEKDNHVLDACAAPGGKTTHIAEKLGN 275
Query: 286 EGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
G+V+++D +KV I A +GL I T +D+
Sbjct: 276 TGQVISLDLHEHKVKLIADNARRLGLSNIETKAMDS 311
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 45/76 (59%), Gaps = 8/76 (10%)
Query: 421 FSPNSFDRVLLDAPCSALGLRPR-----LFAAEETIQSLRNHGKYQRRMFDQAVQLVRPG 475
F+ SFDR+LLDAPCS LG+ R EE I L+ K Q ++ + L++ G
Sbjct: 318 FNAGSFDRILLDAPCSGLGVMRRKPDMKYTKKEEDIMHLQ---KVQLKLLEAVAPLLKDG 374
Query: 476 GIIVYSTCTINPGENE 491
G +VYSTCT++ ENE
Sbjct: 375 GTLVYSTCTVDREENE 390
>gi|404329182|ref|ZP_10969630.1| RNA-binding protein Sun [Sporolactobacillus vineae DSM 21990 =
SL153]
Length = 448
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 51/87 (58%), Gaps = 3/87 (3%)
Query: 407 RNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGL--RPRLFAAEETIQSLRNHGKYQRRM 464
R + + R E FSP SFDR+LLD PCS LG+ R +++ + L + + Q +
Sbjct: 304 RTKAMDAR-EAGSFFSPASFDRLLLDVPCSGLGVIRRKPEIRWDKSPEDLGHLAEIQNAL 362
Query: 465 FDQAVQLVRPGGIIVYSTCTINPGENE 491
++ LVR GG +VYSTCT+N EN+
Sbjct: 363 LERTSTLVRSGGWLVYSTCTVNRDEND 389
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 52/84 (61%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G + +Q+ S++ A A+ P+KG +LD CA PGGKTT + +++ G+++A+D +K
Sbjct: 230 GLMTIQDESSMLVADAVAPEKGMTVLDACAGPGGKTTHLGERMQNSGQIIALDLHEHKTK 289
Query: 301 DIQKLAAEMGLKCITTYKLDALKA 324
I + A +G+ I T +DA +A
Sbjct: 290 LIDQSAKRLGVTNIRTKAMDAREA 313
>gi|168186789|ref|ZP_02621424.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum C str. Eklund]
gi|169295225|gb|EDS77358.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum C str. Eklund]
Length = 443
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 66/115 (57%), Gaps = 3/115 (2%)
Query: 219 EGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTA 278
E I ++ I + P F EG+I +Q+ +++ A ++D ++G +LD+C+APGGKTT
Sbjct: 212 EAIVINKGKSIEKNPLFK---EGKITVQDESAMLVAPSIDAKEGATVLDLCSAPGGKTTH 268
Query: 279 IASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESND 333
I+ ++ + G V A D NK+ +++ A +G+ I ++DA K + S D
Sbjct: 269 ISEIMNNTGIVKAFDIHDNKISLVKENAKRLGINNIACAEMDACKFNKELENSAD 323
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 424 NSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
NS D VL+D PCS LG+ +P + ++ ++S ++ Q+++ + A + VR G +VY
Sbjct: 320 NSADMVLIDVPCSGLGIIRKKPEIKYTKD-VKSTKDIVAIQKKIMENAAKYVRKEGTLVY 378
Query: 481 STCTINPGENE 491
STCTIN ENE
Sbjct: 379 STCTINKDENE 389
>gi|448392533|ref|ZP_21567307.1| RNA methylase [Haloterrigena salina JCM 13891]
gi|445664623|gb|ELZ17332.1| RNA methylase [Haloterrigena salina JCM 13891]
Length = 302
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 59/115 (51%), Gaps = 16/115 (13%)
Query: 219 EGIA---VDMHNRIFQLP---------SFYDVLEGEIFLQNLPSIVTAHALDPQKGERIL 266
EG+A D + R+ L SF+ G+ + +P +V LDPQ GER+
Sbjct: 48 EGLAYEQADWNPRVLDLETGSPGSTWTSFHGFTHGQEEVSAVPPVV----LDPQPGERVW 103
Query: 267 DMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
D CAAPGGK T +A+L+ DEG VVA D + ++ ++ A +G + DA
Sbjct: 104 DSCAAPGGKATQLAALMDDEGTVVANDNNLGRISALRFNAERLGATSLAVTNADA 158
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 421 FSPNSFDRVLLDAPCSALG-LRPRLFAAEETIQ-SLRNHGKYQRRMFDQAVQLVRPGGII 478
F + FDR L+DAPC+ G +R A + + ++ + Q+ + +A+Q R GG +
Sbjct: 166 FDFDEFDRALVDAPCTCEGTIRKNPDALDNWSEGAIASVAGVQKGILRRAIQATREGGTV 225
Query: 479 VYSTCTINPGENEAL 493
VYSTCT P ENEA+
Sbjct: 226 VYSTCTFAPEENEAV 240
>gi|347523381|ref|YP_004780951.1| Fmu (Sun) domain containing protein [Pyrolobus fumarii 1A]
gi|343460263|gb|AEM38699.1| Fmu (Sun) domain protein [Pyrolobus fumarii 1A]
Length = 477
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 51/79 (64%), Gaps = 4/79 (5%)
Query: 236 YDVL----EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVA 291
YD L EG+I Q+ S + A LDP+ GERI+D+ AAPGGKT +A L R + E+VA
Sbjct: 247 YDQLHLLKEGKIIPQDDSSALAAIILDPKPGERIIDLTAAPGGKTIHLAELSRVQAEIVA 306
Query: 292 VDRSHNKVMDIQKLAAEMG 310
+D H++++ + ++A G
Sbjct: 307 LDVFHDRMLRLVEMAKRTG 325
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 8/80 (10%)
Query: 420 GFSPNSFDRVLLDAPCSA---LGLRP--RLFAAEETIQSLRNHGKYQRRMFDQAVQLVRP 474
F FD+ L+D CS+ LG P R E+ + L + Q + + A++LV+P
Sbjct: 343 AFGEEVFDKALVDPSCSSTGVLGKHPDARWRLNEKRLCQLVSQ---QEEILEAAIRLVKP 399
Query: 475 GGIIVYSTCTINPGENEALC 494
GG I+Y+ C+I P E E +
Sbjct: 400 GGRILYTVCSILPEEGEEII 419
>gi|242399529|ref|YP_002994954.1| nucleolar protein I [Thermococcus sibiricus MM 739]
gi|242265923|gb|ACS90605.1| Putative nucleolar protein I [Thermococcus sibiricus MM 739]
Length = 304
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 49/73 (67%), Gaps = 2/73 (2%)
Query: 424 NSFDRVLLDAPCSALGL--RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYS 481
N+FD++LLDAPCS++G+ + F +++ + + Q+++ A + ++P G++VYS
Sbjct: 172 NTFDKILLDAPCSSVGMVRKSFKFLFSWSMKKVITYSNIQKKLIMAAYKALKPRGVLVYS 231
Query: 482 TCTINPGENEALC 494
TCTI+P ENE +
Sbjct: 232 TCTIDPLENEGVV 244
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
Query: 235 FYDVLE---GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVA 291
F D++E G +F Q S++ LDPQ GE +LDM AAPG KTT IA + ++G ++A
Sbjct: 75 FGDMIEYSLGLVFPQEASSMIPPVVLDPQPGELVLDMAAAPGAKTTQIAQYMENKGCIIA 134
Query: 292 VDRSHNKV 299
D +V
Sbjct: 135 NDMKKWRV 142
>gi|41615318|ref|NP_963816.1| hypothetical protein NEQ536 [Nanoarchaeum equitans Kin4-M]
gi|40069042|gb|AAR39377.1| NEQ536 [Nanoarchaeum equitans Kin4-M]
Length = 332
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 47/76 (61%), Gaps = 8/76 (10%)
Query: 424 NSFDRVLLDAPCSALGLRPRLFAAEETIQS-----LRNHGKYQRRMFDQAVQLVRPGGII 478
N+FDR+LLDAPCS +G L + +T+Q + K QR++ A + ++P GI+
Sbjct: 197 NTFDRILLDAPCSGVG---ALRKSYKTLQMWNPNMIERLSKLQRQLIQAAFEALKPNGIL 253
Query: 479 VYSTCTINPGENEALC 494
VYSTCT+ P ENE +
Sbjct: 254 VYSTCTLEPLENEFVV 269
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 35/59 (59%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
G I+ Q S++ ALD ++ ILDM AAPG KTT IA ++ ++A D S +++
Sbjct: 110 GYIYSQEAASMIPPLALDLEENLLILDMAAAPGSKTTQIAMHTQNNSYIIANDISLDRI 168
>gi|11499905|ref|NP_071149.1| fmu and fmv protein [Archaeoglobus fulgidus DSM 4304]
gi|2648195|gb|AAB88932.1| fmu and fmv protein [Archaeoglobus fulgidus DSM 4304]
Length = 437
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 51/75 (68%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
EG+ +Q+L S +HAL+P G+ ++D+ AAPG KT +A L+++EG +VAVD S ++V
Sbjct: 228 EGKYVIQDLASCFVSHALNPSPGDVVIDLAAAPGMKTAHMAMLMQNEGRIVAVDNSPSRV 287
Query: 300 MDIQKLAAEMGLKCI 314
++ ++G+K +
Sbjct: 288 RRMRSKLKQLGVKNV 302
>gi|269839713|ref|YP_003324405.1| RNA methylase [Thermobaculum terrenum ATCC BAA-798]
gi|269791443|gb|ACZ43583.1| RNA methylase, NOL1/NOP2/sun family [Thermobaculum terrenum ATCC
BAA-798]
Length = 325
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 55/84 (65%), Gaps = 3/84 (3%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
EG+I+LQ+L S+V L P+ GER+LD+ AAPG KTT +A+L+ + GE+VA D S +
Sbjct: 91 EGKIYLQDLASMVPVLVLAPRPGERVLDLAAAPGSKTTQMAALMGNSGEIVANDVSPARR 150
Query: 300 MDIQKLAAEMGLKCITTYKLDALK 323
KL A + + ++ ++ A++
Sbjct: 151 F---KLVANLRQQGVSIARVTAIR 171
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 423 PNSFDRVLLDAPCSALGL----RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGII 478
P FDR LLDAPCS G+ P + + + ++ + Q + AV R GG+I
Sbjct: 180 PEEFDRTLLDAPCSMEGMFNCSDPATYE-HWSPRKVKVLARRQAHLLRSAVSATRVGGVI 238
Query: 479 VYSTCTINPGENEAL 493
VYSTCT++P ENE +
Sbjct: 239 VYSTCTLSPEENEGV 253
>gi|347525667|ref|YP_004832415.1| 16S rRNA m(5)C 967 methyltransferase [Lactobacillus ruminis ATCC
27782]
gi|345284626|gb|AEN78479.1| 16S rRNA m(5)C 967 methyltransferase [Lactobacillus ruminis ATCC
27782]
Length = 447
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 45/75 (60%), Gaps = 4/75 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F SFD+VL+DAPCS LGL +P + + SL H Q + DQ +LV+PGG
Sbjct: 320 FDEESFDKVLIDAPCSGLGLMRRKPEVKYDKHFKDSLSLHD-VQVGILDQVAELVKPGGR 378
Query: 478 IVYSTCTINPGENEA 492
+ YSTCTI EN+A
Sbjct: 379 LTYSTCTILNEENQA 393
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 56/95 (58%), Gaps = 5/95 (5%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G + +Q+ +++ ++D + + +LD CAAPGGKT IA++L D G V A+D +KV
Sbjct: 233 GLVTVQDESAMLAVDSMDVKSTDVVLDGCAAPGGKTMQIAAVL-DSGRVYALDIHAHKVG 291
Query: 301 DIQKLAAEMGL-KCITTYKLDALKAVRRKNESNDE 334
I+K A G+ +T K DA KA K E ++E
Sbjct: 292 LIEKNAELCGVTNYVTAKKTDARKA---KEEFDEE 323
>gi|448409715|ref|ZP_21574842.1| tRNA and rRNA cytosine-C5-methylase [Halosimplex carlsbadense
2-9-1]
gi|445672486|gb|ELZ25058.1| tRNA and rRNA cytosine-C5-methylase [Halosimplex carlsbadense
2-9-1]
Length = 312
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 54/104 (51%), Gaps = 5/104 (4%)
Query: 223 VDMHNRIFQLP-----SFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTT 277
V H+ +F LP + + + G I Q S V A LDPQ GER+ D CAAPG KTT
Sbjct: 55 VGWHDGLFALPDDQPGTNWPYVLGWIHGQEEVSAVPAAVLDPQPGERVWDACAAPGSKTT 114
Query: 278 AIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
+A+L+ D G +VA D + ++ ++ A G + DA
Sbjct: 115 QLAALMDDTGLLVATDNNLGRISALRSNAERAGATNVAVTHEDA 158
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 49/92 (53%), Gaps = 4/92 (4%)
Query: 406 GRNQCLGG-RAENSKGFSPNS-FDRVLLDAPCSALG-LRPRLFAAEE-TIQSLRNHGKYQ 461
RN L RA +S G + +DR L+D PCS G +R A ++ + + Q
Sbjct: 158 ARNHSLKPFRAPDSDGGREGAPYDRALVDVPCSCEGTIRKNPDALDDWELDHVEGISGVQ 217
Query: 462 RRMFDQAVQLVRPGGIIVYSTCTINPGENEAL 493
+ + +A+Q R GG +VYSTCT P ENEA+
Sbjct: 218 KGVLRRAIQTTREGGTVVYSTCTFAPEENEAV 249
>gi|335996801|ref|ZP_08562718.1| 16S rRNA m(5)C methyltransferase [Lactobacillus ruminis SPM0211]
gi|335351871|gb|EGM53362.1| 16S rRNA m(5)C methyltransferase [Lactobacillus ruminis SPM0211]
Length = 447
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 45/75 (60%), Gaps = 4/75 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F SFD+VL+DAPCS LGL +P + + SL H Q + DQ +LV+PGG
Sbjct: 320 FDEESFDKVLIDAPCSGLGLMRRKPEVKYDKHFKDSLSLHD-VQVGILDQVAELVKPGGR 378
Query: 478 IVYSTCTINPGENEA 492
+ YSTCTI EN+A
Sbjct: 379 LTYSTCTILNEENQA 393
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 57/95 (60%), Gaps = 5/95 (5%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G + +Q+ +++ ++D + + +LD CAAPGGKT IA++L D G V A+D +KV
Sbjct: 233 GLVTVQDESAMLAVDSMDVKSTDVVLDGCAAPGGKTMQIAAVL-DSGRVYALDIHAHKVG 291
Query: 301 DIQKLAAEMGL-KCITTYKLDALKAVRRKNESNDE 334
I+K A G+ K +T K DA KA K E ++E
Sbjct: 292 LIEKNAELCGVTKYVTAKKTDARKA---KEEFDEE 323
>gi|260944772|ref|XP_002616684.1| hypothetical protein CLUG_03925 [Clavispora lusitaniae ATCC 42720]
gi|238850333|gb|EEQ39797.1| hypothetical protein CLUG_03925 [Clavispora lusitaniae ATCC 42720]
Length = 599
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 50/81 (61%), Gaps = 4/81 (4%)
Query: 237 DVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVD--- 293
+ L G LQ S + ALDPQ+ ER+LDM AAPGGKTT I++L+++ G V A D
Sbjct: 309 EYLAGHYILQAASSFLPVMALDPQENERVLDMAAAPGGKTTYISALMKNTGCVFANDANK 368
Query: 294 -RSHNKVMDIQKLAAEMGLKC 313
R+ + + +IQ+L + + C
Sbjct: 369 ARTKSLIANIQRLGCKNTIVC 389
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 44/79 (55%), Gaps = 14/79 (17%)
Query: 426 FDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKY------QRRMFDQAVQLVRP----G 475
FDRVLLDAPCS G+ A +E+++ R + Q+++ A+ V G
Sbjct: 403 FDRVLLDAPCSGTGV----IAKDESVKVSRTEKDFIQIPHLQKQLLLSAIDSVDANSPTG 458
Query: 476 GIIVYSTCTINPGENEALC 494
G+IVYSTC+I ENEA+
Sbjct: 459 GVIVYSTCSIAVDENEAVV 477
>gi|344228747|gb|EGV60633.1| NOL1/NOP2/sun family putative RNA met [Candida tenuis ATCC 10573]
Length = 357
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 50/81 (61%), Gaps = 4/81 (4%)
Query: 237 DVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVD--- 293
+ L G+ LQ S + ALDPQ+ ERILDM AAPGGKTT I++L+++ G V A D
Sbjct: 63 EYLAGQYILQAASSFLPVMALDPQENERILDMAAAPGGKTTYISALMKNTGCVFANDANK 122
Query: 294 -RSHNKVMDIQKLAAEMGLKC 313
R+ + + +I +L + + C
Sbjct: 123 ARTKSLIANIHRLGCKNTIVC 143
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 14/79 (17%)
Query: 426 FDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKY------QRRMFDQAVQLVRP----G 475
FDR+LLDAPCS G+ A +E+++ RN + Q+++ A+ V G
Sbjct: 157 FDRILLDAPCSGTGV----IAKDESVKVNRNEKDFIQIPHLQKQLILSAIDSVDANSATG 212
Query: 476 GIIVYSTCTINPGENEALC 494
G+IVYSTC++ ENEA+
Sbjct: 213 GVIVYSTCSVAIEENEAVV 231
>gi|257051428|ref|YP_003129261.1| RNA methylase, NOL1/NOP2/sun family [Halorhabdus utahensis DSM
12940]
gi|256690191|gb|ACV10528.1| RNA methylase, NOL1/NOP2/sun family [Halorhabdus utahensis DSM
12940]
Length = 302
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 63/121 (52%), Gaps = 8/121 (6%)
Query: 209 MSRAGIFRASEGIA---VDMHNRIFQLP-----SFYDVLEGEIFLQNLPSIVTAHALDPQ 260
+ RA +EGI VD H+ + +LP S + ++G + Q S + LDP
Sbjct: 38 VERAKTALETEGITYETVDWHDGLLRLPDDNPGSNWPYVQGWLHGQEEVSALPPVVLDPD 97
Query: 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
G+R+ D AAPG KTT +A+L+ DEG +VA D + ++ ++ A +G+ + D
Sbjct: 98 PGDRVWDATAAPGSKTTQLAALMDDEGAIVATDNNLGRLSALRSNAERLGVTNLAVTNED 157
Query: 321 A 321
A
Sbjct: 158 A 158
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 413 GRAENSKGFSPNSFDRVLLDAPCSALG-LRPRLFA-AEETIQSLRNHGKYQRRMFDQAVQ 470
R + K F +D L+DAPCS G +R A A+ ++ + Q+ + +AV+
Sbjct: 158 ARNHSLKPFDGRQYDHALVDAPCSCEGTIRKNPDALAQWSLDHVSGIAGAQKGILRRAVE 217
Query: 471 LVRPGGIIVYSTCTINPGENEAL 493
+ +PGG +VYSTCT P ENEA+
Sbjct: 218 VTKPGGTVVYSTCTFAPEENEAV 240
>gi|254423387|ref|ZP_05037105.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
PCC 7335]
gi|196190876|gb|EDX85840.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
PCC 7335]
Length = 491
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 52/86 (60%), Gaps = 3/86 (3%)
Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
+ QLP + EG +Q+ + + ++ LDPQ GE I+D CAAPGGK+ IA L+R+EG
Sbjct: 271 VTQLPGYA---EGWWAVQDSSAQLVSYLLDPQPGEVIIDACAAPGGKSLHIAELMRNEGT 327
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKCI 314
V + DR+ ++ IQ+ +G +
Sbjct: 328 VWSCDRTSSRTKKIQQNIDRLGATIV 353
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 427 DRVLLDAPCSALGLRPRLFAAE--ETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCT 484
DRVLLD PCS LG R A +T S+ + Q+ + A V+PGG++VY+TCT
Sbjct: 371 DRVLLDVPCSGLGTLNRHADARWRQTPDSVDSLVTLQQEILMHASTWVKPGGVLVYATCT 430
Query: 485 INPGENEA 492
++P ENEA
Sbjct: 431 LHPQENEA 438
>gi|16226071|gb|AAL16067.1|AF420249_1 NOL1R [Homo sapiens]
Length = 429
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 68/136 (50%), Gaps = 8/136 (5%)
Query: 194 YFERSGL-YIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVLE------GEIFLQ 246
YF+R G Y G+ +++ + + + + + P+ D+ E G + LQ
Sbjct: 153 YFKRQGFSYQGRASSLDDLRAL-KGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHLILQ 211
Query: 247 NLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLA 306
+ S + A LDP G ++D CAAPG KT+ +A+LL+++G++ A D ++ + L
Sbjct: 212 DRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLL 271
Query: 307 AEMGLKCITTYKLDAL 322
A G+ C + D L
Sbjct: 272 ARAGVSCCELAEEDFL 287
>gi|8922322|ref|NP_060514.1| putative methyltransferase NSUN5 isoform 2 [Homo sapiens]
gi|118573085|sp|Q96P11.2|NSUN5_HUMAN RecName: Full=Putative methyltransferase NSUN5; AltName:
Full=NOL1-related protein; Short=NOL1R; AltName:
Full=NOL1/NOP2/Sun domain family member 5; AltName:
Full=Williams-Beuren syndrome chromosomal region 20A
protein
gi|7022196|dbj|BAA91515.1| unnamed protein product [Homo sapiens]
gi|37674385|gb|AAQ96838.1| unknown [Homo sapiens]
gi|119590098|gb|EAW69692.1| hCG39703, isoform CRA_a [Homo sapiens]
Length = 429
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 68/136 (50%), Gaps = 8/136 (5%)
Query: 194 YFERSGL-YIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVLE------GEIFLQ 246
YF+R G Y G+ +++ + + + + + P+ D+ E G + LQ
Sbjct: 153 YFKRQGFSYQGRASSLDDLRAL-KGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHLILQ 211
Query: 247 NLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLA 306
+ S + A LDP G ++D CAAPG KT+ +A+LL+++G++ A D ++ + L
Sbjct: 212 DRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLL 271
Query: 307 AEMGLKCITTYKLDAL 322
A G+ C + D L
Sbjct: 272 ARAGVSCCELAEEDFL 287
>gi|373112396|ref|ZP_09526628.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium
necrophorum subsp. funduliforme 1_1_36S]
gi|371655815|gb|EHO21153.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium
necrophorum subsp. funduliforme 1_1_36S]
Length = 385
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 54/82 (65%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
EG++ +Q+ S + A L + GE +LD C+APGGKT+ +A +++EG+++++D +K+
Sbjct: 172 EGKMIVQDAASYLAAKNLGAKAGEIVLDTCSAPGGKTSVLAEDMKNEGQILSLDIHTHKI 231
Query: 300 MDIQKLAAEMGLKCITTYKLDA 321
IQ+ ++G+ + KLDA
Sbjct: 232 KLIQENCKKLGITIVQAVKLDA 253
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 8/71 (11%)
Query: 426 FDRVLLDAPCSALGLRPR----LFAAE-ETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
FDR+L+DAPCS G+ + L+ + E I L QR + A ++++ GG +VY
Sbjct: 263 FDRILVDAPCSGYGVLAKKPEGLYTKKPENIGELVI---LQREILASAAEVLKVGGEMVY 319
Query: 481 STCTINPGENE 491
STCTI P EN+
Sbjct: 320 STCTILPQENQ 330
>gi|116492597|ref|YP_804332.1| tRNA and rRNA cytosine-C5-methylase [Pediococcus pentosaceus ATCC
25745]
gi|116102747|gb|ABJ67890.1| tRNA and rRNA cytosine-C5-methylase [Pediococcus pentosaceus ATCC
25745]
Length = 444
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 57/95 (60%)
Query: 239 LEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNK 298
++G++ +Q+ +++ A + +KG+++LD CAAPGGKTT IA+++ + GEV D +
Sbjct: 230 IDGDLTVQDESAMLVAETMHLEKGQKVLDACAAPGGKTTQIAAMIGETGEVTGWDIYQKR 289
Query: 299 VMDIQKLAAEMGLKCITTYKLDALKAVRRKNESND 333
V IQ A M L+ + T DA+ +ES D
Sbjct: 290 VQLIQDNAQRMHLENVKTEVQDAIAPREDLDESFD 324
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 55/105 (52%), Gaps = 9/105 (8%)
Query: 395 RKNMRRMRNGPGRNQCLGGRAENSKGFSP-----NSFDRVLLDAPCSALGL---RPRLFA 446
+K ++ +++ R + E +P SFDR+L+DAPCS +GL +P +
Sbjct: 287 QKRVQLIQDNAQRMHLENVKTEVQDAIAPREDLDESFDRILVDAPCSGIGLMRRKPEIRY 346
Query: 447 AEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENE 491
+ S H + Q ++ D ++++ GG++ YSTCTI EN+
Sbjct: 347 LKSKKDSSDLH-QLQLKILDNIAKMLKVGGVLTYSTCTILRKENQ 390
>gi|323340708|ref|ZP_08080960.1| RNA methyltransferase Sun [Lactobacillus ruminis ATCC 25644]
gi|417974294|ref|ZP_12615115.1| 16S rRNA m(5)C 967 methyltransferase [Lactobacillus ruminis ATCC
25644]
gi|323091831|gb|EFZ34451.1| RNA methyltransferase Sun [Lactobacillus ruminis ATCC 25644]
gi|346329291|gb|EGX97589.1| 16S rRNA m(5)C 967 methyltransferase [Lactobacillus ruminis ATCC
25644]
Length = 447
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 45/75 (60%), Gaps = 4/75 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F SFD+VL+DAPCS LGL +P + + SL H Q + DQ +LV+PGG
Sbjct: 320 FDEESFDKVLIDAPCSGLGLMRRKPEVKYDKHFKDSLSLHD-VQVGILDQVAELVKPGGR 378
Query: 478 IVYSTCTINPGENEA 492
+ YSTCTI EN+A
Sbjct: 379 LTYSTCTILNEENQA 393
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 57/95 (60%), Gaps = 5/95 (5%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G + +Q+ +++ ++D + + +LD CAAPGGKT IA++L D G V A+D +KV
Sbjct: 233 GLVTVQDESAMLAVDSMDVKSTDVVLDGCAAPGGKTMQIAAVL-DSGRVYALDIHAHKVG 291
Query: 301 DIQKLAAEMGL-KCITTYKLDALKAVRRKNESNDE 334
I+K A G+ K +T K DA KA K E ++E
Sbjct: 292 LIEKNAELCGVTKYVTAKKTDARKA---KEEFDEE 323
>gi|428776642|ref|YP_007168429.1| RNA methylase [Halothece sp. PCC 7418]
gi|428690921|gb|AFZ44215.1| RNA methylase, NOL1/NOP2/sun family [Halothece sp. PCC 7418]
Length = 464
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 424 NSFDRVLLDAPCSALGL--RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYS 481
+SFDRVL+D PCS G + ++ + ++ Q+++ +A+QLV+P GIIVYS
Sbjct: 170 HSFDRVLVDVPCSGEGTLRKGKMTRKQHRLRYSEKIATTQKKLLHRALQLVKPNGIIVYS 229
Query: 482 TCTINPGENEAL 493
TCT P ENEA+
Sbjct: 230 TCTFAPEENEAV 241
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 245 LQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQK 304
LQ ++ LDPQ GER++D+CAAPGGKT IA+ L+ G VVA + +++ ++
Sbjct: 86 LQEEIALTAVKVLDPQPGERVIDLCAAPGGKTVQIATRLQGTGMVVANEAQISRLSQLRA 145
Query: 305 LAAEMGLKCITTYKLDALKAVRRKNESND 333
+ +G+ + D ++ +N S D
Sbjct: 146 MLDRIGVSNVMMSNYDG-TSIPLQNHSFD 173
>gi|417602427|ref|ZP_12252997.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
STEC_94C]
gi|345350093|gb|EGW82368.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
STEC_94C]
Length = 479
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR++ D A +RPGG +VY
Sbjct: 185 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRKLIDSAFHALRPGGTLVY 244
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 245 STCTLNQEENEAVC 258
Score = 45.4 bits (106), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 219 EGIAVDMHNR-IFQLPSFYDVLEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGK 275
EG ++ N L S + L G ++Q S++ AL D +R++D+ AAPG K
Sbjct: 72 EGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVMDVAAAPGSK 131
Query: 276 TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
TT IA+ + +EG ++A + S ++V + + G+ + D
Sbjct: 132 TTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFD 176
>gi|27365942|ref|NP_761470.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio vulnificus
CMCP6]
gi|81844637|sp|Q8D9F3.1|RSMF_VIBVU RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|146325711|sp|Q7MKY6.2|RSMF_VIBVY RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|27362091|gb|AAO10997.1| Ribosomal RNA small subunit methyltransferase F [Vibrio vulnificus
CMCP6]
Length = 472
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 64/121 (52%), Gaps = 12/121 (9%)
Query: 378 VSNEKGVERTYVSKADTRKNMRR--MRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPC 435
V+NE R V A N+ R +RN N GR G+ P SFD VLLDAPC
Sbjct: 144 VANEYAASRVKVLHA----NIERCGVRNAALSN--FDGRVFG--GWLPESFDAVLLDAPC 195
Query: 436 SALG-LRPRLFAAEETIQ-SLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEAL 493
S G +R A + Q S+ Q+ + + A Q ++PGG++VYSTCT++ EN+ +
Sbjct: 196 SGEGTVRKDEDAMKNWSQESVLEIAATQKDLIESAFQALKPGGVMVYSTCTLSEEENQQV 255
Query: 494 C 494
C
Sbjct: 256 C 256
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Query: 241 GEIFLQNLPSI--VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNK 298
G ++Q S+ V+A L + E +LD AAPG KTT IA+L+ ++G +VA + + ++
Sbjct: 93 GLFYIQEASSMMPVSALFLGENQFESVLDTAAAPGSKTTQIAALMNNQGILVANEYAASR 152
Query: 299 V 299
V
Sbjct: 153 V 153
>gi|385805084|ref|YP_005841482.1| PUA domain containing protein [Fervidicoccus fontis Kam940]
gi|383794947|gb|AFH42030.1| PUA domain containing protein [Fervidicoccus fontis Kam940]
Length = 414
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 88/199 (44%), Gaps = 36/199 (18%)
Query: 126 VIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVL 185
VI K AE V+ G+ +++PG + + ++G+ VAV
Sbjct: 121 VIADIKAAERVMLGSDLFMPGALKVVNG-KRGEEVAV----------------------- 156
Query: 186 QGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHN---RIFQLPSFYDVLEGE 242
+G +G G + + + GIAV + ++ +L S EG
Sbjct: 157 ---------VSENGYVVGSGILDIDPSEVNPKKRGIAVRIERSPYKMVKLNSLDIFKEGY 207
Query: 243 IFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDI 302
I+ Q+ PS++ HA P++G+ I D+ A+PGGK + R + E A D ++ KV +
Sbjct: 208 IYDQSFPSMLLIHASSPREGDVIADLTASPGGKISHAYEFTRGKAEYYAFDHTNAKVEKV 267
Query: 303 QKLAAEMGLKCITTYKLDA 321
++ +G + + YK D+
Sbjct: 268 EETMRRLGHENVKVYKADS 286
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 7/68 (10%)
Query: 430 LLDAPCSALGLRPRL---FAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTIN 486
++D PC+ LG RPRL F EE +R Q+ + +A+++ PGG IVYSTCT+
Sbjct: 302 IVDPPCTGLGNRPRLSFSFEEEEQEVLIR----LQKALLSEAIRITSPGGKIVYSTCTLT 357
Query: 487 PGENEALC 494
ENE +
Sbjct: 358 VEENEGVV 365
>gi|113474586|ref|YP_720647.1| sun protein [Trichodesmium erythraeum IMS101]
gi|110165634|gb|ABG50174.1| sun protein [Trichodesmium erythraeum IMS101]
Length = 443
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 424 NSFDRVLLDAPCSALGLRPRLFAAE--ETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYS 481
N DRVLLD PCS LG R A +T++++ K Q + + A + V+PGG++VY+
Sbjct: 320 NQADRVLLDVPCSGLGTLHRRADARWRKTLENIGELAKLQGELLENAAKWVKPGGVLVYA 379
Query: 482 TCTINPGENEAL 493
TCTI P ENE +
Sbjct: 380 TCTIYPLENEGV 391
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 56/94 (59%), Gaps = 3/94 (3%)
Query: 228 RIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEG 287
+I +LP + EG +Q+ + + + L+PQ GE I+D CAAPGGKTT I L+ D G
Sbjct: 222 QIQKLPGYN---EGWWSIQDSSAQLVCYLLNPQPGEIIIDACAAPGGKTTHIGELMGDNG 278
Query: 288 EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
++ A+D + +++ ++ + LK I+ + D+
Sbjct: 279 KIFAIDMTASRLKKLESNTERLQLKSISISRGDS 312
>gi|443315650|ref|ZP_21045130.1| ribosomal RNA small subunit methyltransferase RsmB [Leptolyngbya
sp. PCC 6406]
gi|442784744|gb|ELR94604.1| ribosomal RNA small subunit methyltransferase RsmB [Leptolyngbya
sp. PCC 6406]
Length = 454
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 45/71 (63%), Gaps = 8/71 (11%)
Query: 427 DRVLLDAPCSALGLRPRLFAAE-----ETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYS 481
DRV++DAPCS LG R A ETIQ L + Q+ + D+A V+PGG +VY+
Sbjct: 334 DRVIVDAPCSGLGTLHRHADARWRQTPETIQELV---QLQQNLLDRAATWVKPGGTLVYA 390
Query: 482 TCTINPGENEA 492
TCT++P ENEA
Sbjct: 391 TCTLHPAENEA 401
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 54/97 (55%), Gaps = 2/97 (2%)
Query: 236 YDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRS 295
YD G +Q+ + ++ +DPQ + ++D CAAPGGK +A+L+ D G + A DR+
Sbjct: 240 YD--NGWWTVQDASAQWVSYLVDPQPDQVVIDACAAPGGKAAHLAALMEDTGTIWACDRT 297
Query: 296 HNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESN 332
+++ IQ+ +GLK I T D+ R + + +
Sbjct: 298 PSRLKKIQQTCDRLGLKSIHTLVGDSTTLTRFEGQGD 334
>gi|156098789|ref|XP_001615410.1| proliferating-cell nucleolar antigen p120 [Plasmodium vivax Sal-1]
gi|148804284|gb|EDL45683.1| proliferating-cell nucleolar antigen p120, putative [Plasmodium
vivax]
Length = 615
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 46/69 (66%), Gaps = 1/69 (1%)
Query: 426 FDRVLLDAPCSALGLRPRLFAAE-ETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCT 484
FD+++LDAPCS G+ + A +T++ +R + QR++ A+ LV+ GGI+VYSTC+
Sbjct: 378 FDKIILDAPCSGTGVVNKNKGARRKTLKEIRELAQKQRKLLSNAISLVKNGGIVVYSTCS 437
Query: 485 INPGENEAL 493
I ENE +
Sbjct: 438 ITVEENEQV 446
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
Query: 220 GIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAI 279
GI ++ N + S + L G LQ+ S++ L+ + ILDMCAAPGGK T I
Sbjct: 268 GIVINDANS--NVGSLNEYLYGYYMLQSASSLIPVLELNVNPEDTILDMCAAPGGKCTFI 325
Query: 280 ASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323
+L ++ G V A D + + I+ A+ +G++ + DALK
Sbjct: 326 CALQKNRGHVYANDVNKMRCKAIEANASRLGIQNLIITSFDALK 369
>gi|296110425|ref|YP_003620806.1| rRNA methylase () [Leuconostoc kimchii IMSNU 11154]
gi|339490422|ref|YP_004704927.1| rRNA methylase [Leuconostoc sp. C2]
gi|295831956|gb|ADG39837.1| rRNA methylase (putative) [Leuconostoc kimchii IMSNU 11154]
gi|338852094|gb|AEJ30304.1| rRNA methylase (putative) [Leuconostoc sp. C2]
Length = 471
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 45/79 (56%), Gaps = 10/79 (12%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEET-IQSLRNH-----GKYQRRMFDQAVQLVRPGG 476
P FD++LLDAPCS G+ F ET IQ QR + +AV+++RPGG
Sbjct: 164 PQYFDKILLDAPCSGEGM----FRKNETAIQQWHKDFPQELADLQRSILHEAVKMLRPGG 219
Query: 477 IIVYSTCTINPGENEALCA 495
I+YSTCT P E+E + A
Sbjct: 220 QIIYSTCTFAPEEDEQMIA 238
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 30/47 (63%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEG 287
G ++ Q + + PQ GER+LD+ AAPGGKTT +AS ++ +G
Sbjct: 76 GVVYSQEPSAQFVGEVVHPQPGERVLDLSAAPGGKTTHLASFMQQKG 122
>gi|256851169|ref|ZP_05556558.1| conserved hypothetical protein [Lactobacillus jensenii 27-2-CHN]
gi|260660593|ref|ZP_05861508.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus jensenii
115-3-CHN]
gi|256616231|gb|EEU21419.1| conserved hypothetical protein [Lactobacillus jensenii 27-2-CHN]
gi|260548315|gb|EEX24290.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus jensenii
115-3-CHN]
Length = 461
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 12/108 (11%)
Query: 396 KNMRRMRNGPGRNQCLGGRAENS---KGFSPNSFDRVLLDAPCSALGLRPR-----LFAA 447
KN+R G + CL + S + F P FD +L+DAPCS G+ + + +
Sbjct: 137 KNLRENIERWGADNCLVTNEDTSHLAQKF-PRFFDAILVDAPCSGEGMFRKNHDAVTYWS 195
Query: 448 EETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEALCA 495
+E + N Q+ + ++AV++++PGG ++YSTCT P E+E +CA
Sbjct: 196 QEYVLECSNR---QKEILNEAVKMLKPGGSLLYSTCTYAPEEDEEICA 240
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 50/80 (62%), Gaps = 7/80 (8%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVA----VDRSH 296
G ++ Q+ ++ A AL + G+++LD+CAAPGGK+TA+ S L+++G +VA R+
Sbjct: 78 GYVYSQDPSAMYPAEALGVKPGQKVLDLCAAPGGKSTALLSALKNKGLLVANEISTSRAK 137
Query: 297 NKVMDIQKLAAEMGLKCITT 316
N +I++ A+ C+ T
Sbjct: 138 NLRENIERWGAD---NCLVT 154
>gi|325287453|ref|YP_004263243.1| Fmu (Sun) domain-containing protein [Cellulophaga lytica DSM 7489]
gi|324322907|gb|ADY30372.1| Fmu (Sun) domain protein [Cellulophaga lytica DSM 7489]
Length = 403
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 63/105 (60%), Gaps = 3/105 (2%)
Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
+F+ +F +G +Q+ S + H LD + G+R++D CA GGKT IA+L+ ++G+
Sbjct: 195 VFRTEAFK---KGMFEMQDASSQLVGHFLDVKPGQRVVDTCAGAGGKTLHIAALMENKGQ 251
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESND 333
++A+D NK+ ++++ A G I T ++D+ K +++ S D
Sbjct: 252 LIALDIYGNKLKELKRRAKRDGAHNIETREIDSTKVIKKLYNSAD 296
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 424 NSFDRVLLDAPCSALGLRPRLFAAEETIQS--LRNHGKYQRRMFDQAVQLVRPGGIIVYS 481
NS DRVL+DAPC+ LG+ R A+ +Q L K Q+ + ++V+ GG +VY+
Sbjct: 293 NSADRVLIDAPCTGLGVLKRNPDAKWKLQPEFLDKITKTQQEILQSYSRIVKSGGKLVYA 352
Query: 482 TCTINPGEN 490
TC+I P EN
Sbjct: 353 TCSILPQEN 361
>gi|366089306|ref|ZP_09455779.1| 16S rRNA m(5)C 967 methyltransferase [Lactobacillus acidipiscis
KCTC 13900]
Length = 448
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G++ +Q+ + ++ +++ Q +++LDMCAAPGGKTT IA L D G V A+D NK+
Sbjct: 234 GQVTVQDESASLSVESMNIQPDDQVLDMCAAPGGKTTQIAEHLNDNGHVEALDIHKNKLR 293
Query: 301 DIQKLAAEMGL-KCITTYKLDALKA 324
IQ+ M L + +TT LDA K+
Sbjct: 294 LIQRNVDRMHLSESVTTRALDARKS 318
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 52/103 (50%), Gaps = 4/103 (3%)
Query: 395 RKNMRRMRNGPG-RNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGL--RPRLFAAEETI 451
++N+ RM + L R K +S +FD+VL+DAPCS LGL R E+++
Sbjct: 296 QRNVDRMHLSESVTTRALDARKSPEK-YSRETFDKVLVDAPCSGLGLLRRKPEIKYEKSL 354
Query: 452 QSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEALC 494
+ Q + A LV GG + YSTCTI EN+A+
Sbjct: 355 ADTTKLAQVQLSILQAAAPLVAKGGQLTYSTCTIISTENQAVV 397
>gi|289422320|ref|ZP_06424170.1| ribosomal RNA small subunit methyltransferase B [Peptostreptococcus
anaerobius 653-L]
gi|289157265|gb|EFD05880.1| ribosomal RNA small subunit methyltransferase B [Peptostreptococcus
anaerobius 653-L]
Length = 446
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 49/74 (66%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G I +Q++ S++ A AL+P+K ++LD+CAAPGGK+ I +++D G V+A D +K+
Sbjct: 236 GYISVQDISSMMVARALNPKKNSKVLDLCAAPGGKSCHIGEMMKDSGSVLACDVFDHKIK 295
Query: 301 DIQKLAAEMGLKCI 314
I+ + +GL I
Sbjct: 296 LIKAYSNRLGLTNI 309
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 7/73 (9%)
Query: 425 SFDRVLLDAPCSALGL---RPRL-FAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
+FD V+ D PCS +G+ +P + + +E + SL K QR++ D A + ++ G+++Y
Sbjct: 326 AFDYVVCDVPCSGMGIVRRKPEIKYKKKEGVDSL---PKIQRKILDNASKYIKKDGVLIY 382
Query: 481 STCTINPGENEAL 493
STCTI EN L
Sbjct: 383 STCTIFKEENIEL 395
>gi|395242503|ref|ZP_10419500.1| Ribosomal RNA small subunit methyltransferase B [Lactobacillus
pasteurii CRBIP 24.76]
gi|394480235|emb|CCI85740.1| Ribosomal RNA small subunit methyltransferase B [Lactobacillus
pasteurii CRBIP 24.76]
Length = 440
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 58/102 (56%), Gaps = 6/102 (5%)
Query: 394 TRKNMRRMRNGPG-RNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGL---RPRLFAAEE 449
+KN +RM+ + + RA +S FS FD++L+DAPCS LGL +P + ++
Sbjct: 290 VKKNAQRMKVADKLKVAAIDARASDSY-FSDQRFDKILVDAPCSGLGLMRRKPEIRYTKK 348
Query: 450 TIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENE 491
+ L N K Q + D QL+ GG +VYSTCTI+ E+E
Sbjct: 349 P-EDLVNLQKIQLAILDHVSQLLNKGGELVYSTCTISRQEDE 389
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G+I +Q+ + + A D + E++LD C+APGGKT IA L G+V A+D NK+
Sbjct: 230 GDITIQDEAAGLVVQAFDFKGDEQVLDACSAPGGKTVQIAEHLT-TGQVTALDIHKNKLN 288
Query: 301 DIQKLAAEM 309
++K A M
Sbjct: 289 LVKKNAQRM 297
>gi|315230766|ref|YP_004071202.1| ribosomal RNA small subunit methyltransferase B [Thermococcus
barophilus MP]
gi|315183794|gb|ADT83979.1| ribosomal RNA small subunit methyltransferase B [Thermococcus
barophilus MP]
Length = 465
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 52/85 (61%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
EG+I +Q S V + LDP+ G ++D+ AAPGGKT+ IA L+R++G++ A D ++
Sbjct: 252 EGKILVQEEASAVASLILDPKPGMTVVDLAAAPGGKTSHIAELMRNKGKIYAFDIDEFRI 311
Query: 300 MDIQKLAAEMGLKCITTYKLDALKA 324
++++ MG+ + + D KA
Sbjct: 312 KRMKEILKRMGVNIVKIIRKDGRKA 336
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 12/72 (16%)
Query: 427 DRVLLDAPCSALG-------LRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIV 479
DRVLLDAPC++ G LR RL E I + + Q+ + A QL++PGG ++
Sbjct: 346 DRVLLDAPCTSSGTIGKNPELRWRL--RENKILEI---AELQKDLLKVAAQLLKPGGRLL 400
Query: 480 YSTCTINPGENE 491
Y+TC++ P ENE
Sbjct: 401 YATCSLFPEENE 412
>gi|126460774|ref|YP_001057052.1| PUA domain-containing protein [Pyrobaculum calidifontis JCM 11548]
gi|126250495|gb|ABO09586.1| PUA domain containing protein [Pyrobaculum calidifontis JCM 11548]
Length = 375
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 72/293 (24%), Positives = 122/293 (41%), Gaps = 61/293 (20%)
Query: 21 EYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVAS 80
++F+ + KA+T P +RVNT + + +++++
Sbjct: 14 KHFLEFLTDGEIDALFKAITTPPPRYYVRVNTSRISANELVR------------------ 55
Query: 81 SVKGRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGA 140
RL + + +E +++ GP + K V+V +K AE+V+ GA
Sbjct: 56 ----RLNARGVPAYRDEHIEEAIWLPVQGPFRVPTAR------KIVVVDKKAAESVMVGA 105
Query: 141 QVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGL 200
VY PGV+ + VE GD V+V + + VL+ R GL
Sbjct: 106 DVYAPGVIK-TERVEVGD--EVNVVADNGVVVAFGVAVANSDEVLK---------TRRGL 153
Query: 201 YIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQ 260
+I +++A +I LP + EG I+ Q+LP+I H
Sbjct: 154 FIK------VEKSLYKAP---------KIRDLPEY---AEGLIYSQSLPAIAVGHVAKRL 195
Query: 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC 313
E+ +D+ AAPGGK T +A L V AVDRS +K+ +++ +GL+
Sbjct: 196 GVEKAVDLNAAPGGKCTHLAQL---GMRVFAVDRSWSKISRLREELKRLGLEA 245
Score = 42.7 bits (99), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 53/109 (48%), Gaps = 4/109 (3%)
Query: 383 GVERTYVSKADTRKNMRRMRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGLRP 442
V+R++ + R+ ++R+ + L + F L+D PC+ +G+RP
Sbjct: 223 AVDRSWSKISRLREELKRLGLEAQVDVLLHDSRYLDRDFPRLRAGLALVDPPCTDIGVRP 282
Query: 443 RLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENE 491
+++ T ++ + +YQ + A+++ ++YSTCT+ ENE
Sbjct: 283 KIY-HRVTYKAAKTLAQYQLQFLKTALKI---ADYVIYSTCTLTYVENE 327
>gi|417952066|ref|ZP_12595140.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio splendidus
ATCC 33789]
gi|342803115|gb|EGU38495.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio splendidus
ATCC 33789]
Length = 473
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 64/126 (50%), Gaps = 12/126 (9%)
Query: 373 SCKEKVSNEKGVERTYVSKADTRKNMRR--MRNGPGRNQCLGGRAENSKGFSPNSFDRVL 430
+C V+NE R V A N+ R +RN N GR G+ P FD VL
Sbjct: 139 NCGVLVANEYAASRVKVLHA----NIERCGVRNAALSN--FDGRV--FGGWLPEQFDAVL 190
Query: 431 LDAPCSALG-LRPRLFAAEE-TIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPG 488
LDAPCS G +R A + T QS+ Q+ + + A +RP G++VYSTCT++
Sbjct: 191 LDAPCSGEGTIRKDADAMKNWTYQSVVEIADTQKDLIESAFHALRPNGVLVYSTCTLSTE 250
Query: 489 ENEALC 494
EN+ +C
Sbjct: 251 ENQQVC 256
>gi|224061230|ref|XP_002300381.1| predicted protein [Populus trichocarpa]
gi|222847639|gb|EEE85186.1| predicted protein [Populus trichocarpa]
Length = 527
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Query: 427 DRVLLDAPCSALGLRPRL--FAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCT 484
D+VLLDAPCS LG+ + ++ L K Q + D A LV+PGG++VYSTC+
Sbjct: 407 DKVLLDAPCSGLGVLSKRADLRWNRRLEDLEELKKLQEELLDAASILVKPGGVLVYSTCS 466
Query: 485 INPGENE 491
I+P ENE
Sbjct: 467 IDPEENE 473
Score = 43.1 bits (100), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 34/51 (66%)
Query: 256 ALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLA 306
++PQ G+ I+D CAAPGGKT +AS + +G + A+D + ++ +++ A
Sbjct: 329 VVNPQPGDSIIDCCAAPGGKTLYMASQMHGQGMLYAIDINKGRLRIVKETA 379
>gi|157145396|ref|YP_001452715.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Citrobacter koseri
ATCC BAA-895]
gi|167012766|sp|A8AFL6.1|RSMF_CITK8 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|157082601|gb|ABV12279.1| hypothetical protein CKO_01138 [Citrobacter koseri ATCC BAA-895]
Length = 479
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAA--EETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
P +FD +LLDAPCS G+ + A +++S + QR + D A +RPGG +VY
Sbjct: 185 PETFDAILLDAPCSGEGVVRKDPDALKNWSVESNLDIAATQRELIDSAFHALRPGGTLVY 244
Query: 481 STCTINPGENEALC 494
STCT+N ENE++C
Sbjct: 245 STCTLNREENESVC 258
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 239 LEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296
L G ++Q S++ AL + ERI+D+ AAPG KTT IA+ + ++G ++A + S
Sbjct: 93 LSGLFYIQEASSMLPVAALFAEGNTPERIMDVAAAPGSKTTQIAARMNNQGAILANEFSA 152
Query: 297 NKVMDIQKLAAEMGLKCITTYKLD 320
++V + + G+ + D
Sbjct: 153 SRVKVLHANISRCGISNVALTHFD 176
>gi|182420429|ref|ZP_02951648.1| ribosomal RNA small subunit methyltransferase B [Clostridium
butyricum 5521]
gi|237668664|ref|ZP_04528648.1| ribosomal RNA small subunit methyltransferase B [Clostridium
butyricum E4 str. BoNT E BL5262]
gi|182375715|gb|EDT73315.1| ribosomal RNA small subunit methyltransferase B [Clostridium
butyricum 5521]
gi|237657012|gb|EEP54568.1| ribosomal RNA small subunit methyltransferase B [Clostridium
butyricum E4 str. BoNT E BL5262]
Length = 438
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 56/84 (66%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
EG+I +Q+ +++ A LD ++G ++D+C+APGGKTT IA +L + G+V+A D +K+
Sbjct: 226 EGKITVQDESAMLVAPLLDLKEGMTVVDLCSAPGGKTTHIAEILGNTGKVLAFDLHESKL 285
Query: 300 MDIQKLAAEMGLKCITTYKLDALK 323
I++ +G+ +TT+ DA K
Sbjct: 286 GLIKENCERLGITNVTTFAQDATK 309
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 4/64 (6%)
Query: 425 SFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYS 481
S DRVLLD PCS LG+ +P + ++ LR QR + + A Q ++ GG+++YS
Sbjct: 317 STDRVLLDVPCSGLGIIRKKPEIKWNKKR-NDLREIIPVQREIMNNAWQYLKQGGVMIYS 375
Query: 482 TCTI 485
TCT+
Sbjct: 376 TCTL 379
>gi|14521455|ref|NP_126931.1| proliferating-cell nucleolar antigen P120, [Pyrococcus abyssi GE5]
gi|5458674|emb|CAB50161.1| Sun/NOL1/NOP2 nucleolar protein [Pyrococcus abyssi GE5]
gi|380742059|tpe|CCE70693.1| TPA: proliferating-cell nucleolar antigen P120, putative
[Pyrococcus abyssi GE5]
Length = 449
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 52/85 (61%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G+I +Q S V + L+PQ GE I+D+ AAPGGKTT +A L++++G++ A D ++
Sbjct: 238 KGKIIVQEEASAVASLILNPQPGEVIVDLAAAPGGKTTHLAELMKNKGKIYAFDIDKTRM 297
Query: 300 MDIQKLAAEMGLKCITTYKLDALKA 324
+++ MG+K + D KA
Sbjct: 298 KRLKEFVNRMGIKIVKPIIKDGRKA 322
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 12/72 (16%)
Query: 427 DRVLLDAPCSALG-------LRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIV 479
DRVLLDAPC++ G LR RL ++ ++ + QR + + A +LV+PGG+++
Sbjct: 332 DRVLLDAPCTSSGTIGKNPELRWRLRESK-----IKEMAQLQRELLESAAKLVKPGGLLL 386
Query: 480 YSTCTINPGENE 491
Y+TC++ ENE
Sbjct: 387 YTTCSLFTEENE 398
>gi|37679825|ref|NP_934434.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio vulnificus
YJ016]
gi|37198570|dbj|BAC94405.1| sun/nucleolar protein family protein [Vibrio vulnificus YJ016]
Length = 501
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 64/121 (52%), Gaps = 12/121 (9%)
Query: 378 VSNEKGVERTYVSKADTRKNMRR--MRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPC 435
V+NE R V A N+ R +RN N GR G+ P SFD VLLDAPC
Sbjct: 173 VANEYAASRVKVLHA----NIERCGVRNAALSN--FDGRVFG--GWLPESFDAVLLDAPC 224
Query: 436 SALG-LRPRLFAAEETIQ-SLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEAL 493
S G +R A + Q S+ Q+ + + A Q ++PGG++VYSTCT++ EN+ +
Sbjct: 225 SGEGTVRKDEDAMKNWSQESVLEIAATQKDLIESAFQALKPGGVMVYSTCTLSEEENQQV 284
Query: 494 C 494
C
Sbjct: 285 C 285
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Query: 241 GEIFLQNLPSI--VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNK 298
G ++Q S+ V+A L + E +LD AAPG KTT IA+L+ ++G +VA + + ++
Sbjct: 122 GLFYIQEASSMMPVSALFLGENQFESVLDTAAAPGSKTTQIAALMNNQGILVANEYAASR 181
Query: 299 V 299
V
Sbjct: 182 V 182
>gi|333896287|ref|YP_004470161.1| RNA methylase [Thermoanaerobacterium xylanolyticum LX-11]
gi|333111552|gb|AEF16489.1| RNA methylase, NOL1/NOP2/sun family [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 455
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 48/70 (68%), Gaps = 2/70 (2%)
Query: 426 FDRVLLDAPCSALGL--RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTC 483
FD++L+DAPCS G+ + + E +++++ + Q+++ D A +++PGGI+VYSTC
Sbjct: 174 FDKILVDAPCSGEGMFRKDEIAINEWSLENVLSCSLRQKKILDSAANMLKPGGIMVYSTC 233
Query: 484 TINPGENEAL 493
T +P ENE +
Sbjct: 234 TFSPEENEGV 243
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 49/81 (60%), Gaps = 2/81 (2%)
Query: 235 FYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDR 294
++DV G ++Q ++ AL+P G+ +LD+ AAPGGK+T IAS L+ EG +V+ +
Sbjct: 79 YHDV--GLYYIQEPSAMAVVEALNPMPGDMVLDLSAAPGGKSTHIASKLKGEGLLVSNEI 136
Query: 295 SHNKVMDIQKLAAEMGLKCIT 315
+ +V + + MG++ +
Sbjct: 137 NSKRVKVLAENIERMGIRNVV 157
>gi|320156455|ref|YP_004188834.1| ribosomal RNA small subunit methyltransferase F [Vibrio vulnificus
MO6-24/O]
gi|319931767|gb|ADV86631.1| ribosomal RNA small subunit methyltransferase F [Vibrio vulnificus
MO6-24/O]
Length = 472
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 64/121 (52%), Gaps = 12/121 (9%)
Query: 378 VSNEKGVERTYVSKADTRKNMRR--MRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPC 435
V+NE R V A N+ R +RN N GR G+ P SFD VLLDAPC
Sbjct: 144 VANEYAASRVKVLHA----NIERCGVRNAALSN--FDGRVFG--GWLPESFDAVLLDAPC 195
Query: 436 SALG-LRPRLFAAEETIQ-SLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEAL 493
S G +R A + Q S+ Q+ + + A Q ++PGG++VYSTCT++ EN+ +
Sbjct: 196 SGEGTVRKDEDAMKNWSQESVLEIAATQKDLIESAFQALKPGGVMVYSTCTLSEEENQQV 255
Query: 494 C 494
C
Sbjct: 256 C 256
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Query: 241 GEIFLQNLPSI--VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNK 298
G ++Q S+ V+A L + E +LD AAPG KTT IA+L+ ++G +VA + + ++
Sbjct: 93 GLFYIQEASSMMPVSALFLGENQFESVLDTAAAPGSKTTQIAALMNNQGILVANEYAASR 152
Query: 299 V 299
V
Sbjct: 153 V 153
>gi|90961592|ref|YP_535508.1| 16S rRNA m(5)C 967 methyltransferase [Lactobacillus salivarius
UCC118]
gi|301299300|ref|ZP_07205586.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
salivarius ACS-116-V-Col5a]
gi|90820786|gb|ABD99425.1| 16S rRNA m(5)C 967 methyltransferase [Lactobacillus salivarius
UCC118]
gi|300853144|gb|EFK80742.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
salivarius ACS-116-V-Col5a]
Length = 445
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 62/96 (64%), Gaps = 2/96 (2%)
Query: 232 LPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIAS-LLRDEGEVV 290
LP + G++ +Q+ +++ ++D QK + +LD CAAPGGKTT IA L++ EG+V
Sbjct: 222 LPKSSEFRNGKMIIQDESAMLAVESMDIQKDDIVLDACAAPGGKTTQIAEKLMKGEGKVW 281
Query: 291 AVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDALKAV 325
A+D +KV I++ A ++GL ++ +LDA KA+
Sbjct: 282 ALDIHKHKVKLIEENANKLGLISKVSAKQLDARKAI 317
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F FD++L+DAPCS LGL +P + ++ S H Q + ++ L++ GG
Sbjct: 320 FDSEKFDKILVDAPCSGLGLMRRKPEVKYEKKLADSYSLHD-IQVNILEKVAPLLKKGGY 378
Query: 478 IVYSTCTINPGENEALC 494
+ YSTCTI EN+ +
Sbjct: 379 LTYSTCTILNIENQKVI 395
>gi|300711849|ref|YP_003737663.1| tRNA and rRNA cytosine-C5-methylase [Halalkalicoccus jeotgali B3]
gi|448295539|ref|ZP_21485603.1| tRNA and rRNA cytosine-C5-methylase [Halalkalicoccus jeotgali B3]
gi|299125532|gb|ADJ15871.1| tRNA and rRNA cytosine-C5-methylase [Halalkalicoccus jeotgali B3]
gi|445583638|gb|ELY37967.1| tRNA and rRNA cytosine-C5-methylase [Halalkalicoccus jeotgali B3]
Length = 302
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 52/89 (58%), Gaps = 4/89 (4%)
Query: 233 PSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAV 292
P F+ + G+ + +LP+ V L P GER+LD CAAPGGKT IA+L+ D G VVA
Sbjct: 74 PYFHGWIHGQEEVSSLPATV----LSPDPGERVLDACAAPGGKTAQIAALMDDTGLVVAN 129
Query: 293 DRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
D + ++ ++ A +GL + + DA
Sbjct: 130 DNNLGRLSALRFNAERLGLTNVAVTRQDA 158
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 4/73 (5%)
Query: 424 NSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
++FDRVL+DAPCS G+ RP E ++ + Q+ + +A+Q R GG++VY
Sbjct: 169 DAFDRVLVDAPCSCEGIIRKRPDTLD-EWSLSHVEGVSGVQKGILKRAIQATREGGVVVY 227
Query: 481 STCTINPGENEAL 493
STCT P ENEA+
Sbjct: 228 STCTFAPEENEAV 240
>gi|403286054|ref|XP_003934322.1| PREDICTED: putative methyltransferase NSUN5 [Saimiri boliviensis
boliviensis]
Length = 380
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 69/138 (50%), Gaps = 12/138 (8%)
Query: 194 YFERSGLYIGQGTAMMSRAGIFRASEG---IAVDMHNRIFQLPSFYDVLE------GEIF 244
YF+R G + QG A S RA +G + + + P+ D+ E G +
Sbjct: 67 YFKRKG-FSYQGRA--SSVDDLRALKGKRFLLDPLVPELLVFPTQTDLHEHPLYQAGHLI 123
Query: 245 LQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQK 304
LQ+ S + A LDP G ++D CAAPG KT+ +A+LL+++G++ A D ++ +
Sbjct: 124 LQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMAT 183
Query: 305 LAAEMGLKCITTYKLDAL 322
L A G+ C + D L
Sbjct: 184 LLARAGVSCCELAEEDFL 201
>gi|429728017|ref|ZP_19262762.1| ribosomal RNA small subunit methyltransferase B, partial
[Peptostreptococcus anaerobius VPI 4330]
gi|429150689|gb|EKX93586.1| ribosomal RNA small subunit methyltransferase B, partial
[Peptostreptococcus anaerobius VPI 4330]
Length = 464
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 49/74 (66%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G I +Q++ S++ A AL+P+K ++LD+CAAPGGK+ I +++D G V+A D +K+
Sbjct: 254 GYISVQDISSMMVARALNPKKNSKVLDLCAAPGGKSCHIGEMMKDSGSVLACDVFDHKIK 313
Query: 301 DIQKLAAEMGLKCI 314
I+ + +GL I
Sbjct: 314 LIKAYSNRLGLTNI 327
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 7/73 (9%)
Query: 425 SFDRVLLDAPCSALGL---RPRL-FAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
+FD V+ D PCS +G+ +P + + +E + SL K QR++ D A + ++ G+++Y
Sbjct: 344 AFDYVVCDVPCSGMGIVRRKPEIKYKKKEDVDSL---PKIQRKILDNASKYIKKDGVLIY 400
Query: 481 STCTINPGENEAL 493
STCTI EN L
Sbjct: 401 STCTIFKEENIEL 413
>gi|385840289|ref|YP_005863613.1| 16S ribosomal RNA m(5)C 967 methyltransferase [Lactobacillus
salivarius CECT 5713]
gi|300214410|gb|ADJ78826.1| 16S ribosomal RNA m(5)C 967 methyltransferase [Lactobacillus
salivarius CECT 5713]
Length = 445
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 62/96 (64%), Gaps = 2/96 (2%)
Query: 232 LPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIAS-LLRDEGEVV 290
LP + G++ +Q+ +++ ++D QK + +LD CAAPGGKTT IA L++ EG+V
Sbjct: 222 LPKSSEFRNGKMIIQDESAMLAVESMDIQKDDIVLDACAAPGGKTTQIAEKLMKGEGKVW 281
Query: 291 AVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDALKAV 325
A+D +KV I++ A ++GL ++ +LDA KA+
Sbjct: 282 ALDIHKHKVKLIEENANKLGLISKVSAKQLDARKAI 317
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F FD++L+DAPCS LGL +P + ++ S H Q + ++ L++ GG
Sbjct: 320 FDSEKFDKILVDAPCSGLGLMRRKPEVKYEKKLADSYSLHD-IQVNILEKVAPLLKKGGY 378
Query: 478 IVYSTCTINPGENEALC 494
+ YSTCTI EN+ +
Sbjct: 379 LTYSTCTILNIENQKVI 395
>gi|197301683|ref|ZP_03166753.1| hypothetical protein RUMLAC_00409 [Ruminococcus lactaris ATCC
29176]
gi|197299123|gb|EDY33653.1| NOL1/NOP2/sun family protein [Ruminococcus lactaris ATCC 29176]
Length = 470
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 47/71 (66%), Gaps = 8/71 (11%)
Query: 426 FDRVLLDAPCSALGLRPRLFAAEETIQSLRNHG-----KYQRRMFDQAVQLVRPGGIIVY 480
FD++L+DAPCS G+ + ++ +++ HG K Q+ + QA Q++RPGG+++Y
Sbjct: 183 FDKILIDAPCSGEGMFRK---DKKMVKAWEEHGPSFFSKIQKSIITQAAQMLRPGGMLLY 239
Query: 481 STCTINPGENE 491
STCT +P ENE
Sbjct: 240 STCTFSPEENE 250
Score = 45.1 bits (105), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G +LQ ++ A L + G+R+LD+CAAPGGK T + + L+ G + A D S ++
Sbjct: 92 GLYYLQEPSAMTPASRLPVEPGDRVLDVCAAPGGKATELGAKLQGTGVLAANDLSSSRAK 151
Query: 301 DIQK 304
+ K
Sbjct: 152 GLLK 155
>gi|379728828|ref|YP_005321024.1| ribosomal RNA small subunit methyltransferase B [Saprospira grandis
str. Lewin]
gi|378574439|gb|AFC23440.1| ribosomal RNA small subunit methyltransferase B [Saprospira grandis
str. Lewin]
Length = 405
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 62/113 (54%), Gaps = 12/113 (10%)
Query: 219 EGIAVDM----------HNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDM 268
EG+ V++ NR F Y+ EG +Q+ S AH L PQ G ++D
Sbjct: 174 EGLPVELLGDREALVLGQNRKFTHLKSYE--EGWFEVQDYASQQLAHFLKPQAGRYLVDA 231
Query: 269 CAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
CA GGK+ +A+L+++ GE++++D S +K+ +++K A G+ I T K+ A
Sbjct: 232 CAGAGGKSLHLAALMKNRGEILSMDLSEHKLKELRKRAKRAGVSIIKTEKIPA 284
Score = 45.4 bits (106), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 23/85 (27%)
Query: 421 FSP---NSFDRVLLDAPCSALG-----------LRPRLFAAEETIQSLRNHGKYQRRMFD 466
FSP N D ++LD PCS LG ++P E IQ+ + H +
Sbjct: 288 FSPAYYNMADYLVLDVPCSGLGVLRRNPQTKWIIKPEFL---EEIQATQAH------ILR 338
Query: 467 QAVQLVRPGGIIVYSTCTINPGENE 491
+ L +PGG ++Y+TC+I P ENE
Sbjct: 339 EYSLLCKPGGQLLYATCSILPSENE 363
>gi|384431566|ref|YP_005640926.1| RNA methylase [Thermus thermophilus SG0.5JP17-16]
gi|333967034|gb|AEG33799.1| RNA methylase, NOL1/NOP2/sun family [Thermus thermophilus
SG0.5JP17-16]
Length = 456
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 426 FDRVLLDAPCSALGL--RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTC 483
F RVLLDAPCS G+ + R + R G+ Q+ + QA +LV PGG++VYSTC
Sbjct: 171 FHRVLLDAPCSGEGMFRKDREAVRHWGPSAPRRMGEVQKALLAQAARLVGPGGVLVYSTC 230
Query: 484 TINPGENEALCA 495
T P ENEA+ A
Sbjct: 231 TFAPEENEAVVA 242
Score = 46.2 bits (108), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 219 EGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTA 278
EG R P FY G ++Q + LDP+ GER+LD+ AAPGGKTT
Sbjct: 62 EGFYYPEEARPGPHPFFY---AGLYYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTH 118
Query: 279 IASLLRDEGEVVAVDRSHNKVMDI 302
+A+ + +G ++A + +V +
Sbjct: 119 LAARMGGKGLLLANEVDGKRVRGL 142
>gi|297206034|ref|ZP_06923429.1| NOL1/NOP2/sun family protein [Lactobacillus jensenii JV-V16]
gi|297149160|gb|EFH29458.1| NOL1/NOP2/sun family protein [Lactobacillus jensenii JV-V16]
Length = 781
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 12/108 (11%)
Query: 396 KNMRRMRNGPGRNQCLGGRAENS---KGFSPNSFDRVLLDAPCSALGLRPR-----LFAA 447
KN+R G + CL + S + F P FD +L+DAPCS G+ + + +
Sbjct: 457 KNLRENIERWGADNCLVTNEDTSHLAQKF-PRFFDAILVDAPCSGEGMFRKNHDAVTYWS 515
Query: 448 EETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEALCA 495
+E + N Q+ + ++AV++++PGG ++YSTCT P E+E +CA
Sbjct: 516 QEYVLECSNR---QKEILNEAVKMLKPGGSLLYSTCTYAPEEDEEICA 560
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 50/80 (62%), Gaps = 7/80 (8%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVA----VDRSH 296
G ++ Q+ ++ A AL + G+++LD+CAAPGGK+TA+ S L+++G +VA R+
Sbjct: 398 GYVYSQDPSAMYPAEALGVKPGQKVLDLCAAPGGKSTALLSALKNKGLLVANEISTSRAK 457
Query: 297 NKVMDIQKLAAEMGLKCITT 316
N +I++ A+ C+ T
Sbjct: 458 NLRENIERWGAD---NCLVT 474
>gi|313225604|emb|CBY07078.1| unnamed protein product [Oikopleura dioica]
Length = 700
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 51/84 (60%)
Query: 237 DVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296
+ L G LQ+ S + AL PQ+GE++LDMCAAPGGKTT I+ L+++ G V+A D++
Sbjct: 271 EYLAGHYMLQSASSFLPVMALAPQEGEKVLDMCAAPGGKTTYISQLMKNTGMVLANDKNK 330
Query: 297 NKVMDIQKLAAEMGLKCITTYKLD 320
++ + + +G + T D
Sbjct: 331 LRMKALVANSHRLGCSNVATCNYD 354
>gi|377576171|ref|ZP_09805155.1| ribosomal RNA small subunit methyltransferase F [Escherichia
hermannii NBRC 105704]
gi|377542203|dbj|GAB50320.1| ribosomal RNA small subunit methyltransferase F [Escherichia
hermannii NBRC 105704]
Length = 478
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 44/80 (55%), Gaps = 14/80 (17%)
Query: 423 PNSFDRVLLDAPCSALG--------LRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRP 474
P +FD +LLDAPCS G LR A+ E I + QR + D A +RP
Sbjct: 185 PEAFDAILLDAPCSGEGVVRKDPDALRNWSIASNEAIAAT------QRELIDSAFHALRP 238
Query: 475 GGIIVYSTCTINPGENEALC 494
GG +VYSTCT+N ENE +C
Sbjct: 239 GGTLVYSTCTLNREENEQVC 258
Score = 46.2 bits (108), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 54/104 (51%), Gaps = 2/104 (1%)
Query: 219 EGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGKT 276
EG ++ + F L S + L G ++Q S++ AL D R++D+ AAPG KT
Sbjct: 73 EGFWIERDDEDFPLGSSAEHLSGLFYIQEASSMLPVAALFADNPSFARVMDVAAAPGSKT 132
Query: 277 TAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
T IA+ ++++G ++A + + ++V + + G+ + D
Sbjct: 133 TQIAARMKNQGAILANEYAASRVKVLAANISRCGISNVALTHFD 176
>gi|335438273|ref|ZP_08561021.1| RNA methylase, NOL1/NOP2/sun family protein [Halorhabdus tiamatea
SARL4B]
gi|334892467|gb|EGM30700.1| RNA methylase, NOL1/NOP2/sun family protein [Halorhabdus tiamatea
SARL4B]
Length = 302
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 8/121 (6%)
Query: 209 MSRAGIFRASEGIA---VDMHNRIFQLP-----SFYDVLEGEIFLQNLPSIVTAHALDPQ 260
+ RA +EGIA V+ H+ + +LP S + ++G + Q S + LDP
Sbjct: 38 VERAKAALETEGIAYEAVEWHDGLLRLPDDSPGSNWPYVQGWLHGQEEVSALPPVVLDPS 97
Query: 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
G+R+ D AAPG KTT +A+L+ DEG +VA D + ++ ++ A +G+ + D
Sbjct: 98 PGDRVWDATAAPGSKTTQLAALMHDEGTIVATDNNLGRLSALRSNAERLGVTNLAVTNED 157
Query: 321 A 321
A
Sbjct: 158 A 158
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 413 GRAENSKGFSPNSFDRVLLDAPCSALG-LRPRLFAAEE-TIQSLRNHGKYQRRMFDQAVQ 470
R + K F +D L+D PCS G +R +E ++ + Q+ + +A++
Sbjct: 158 ARNHSLKPFDGAQYDHALVDVPCSCEGTIRKNPDTLDEWSLDHVAGIASAQKGILRRAIE 217
Query: 471 LVRPGGIIVYSTCTINPGENEAL 493
+ PGG +VYSTCT P ENEA+
Sbjct: 218 VTEPGGTVVYSTCTFAPEENEAV 240
>gi|332159509|ref|YP_004424788.1| fmu protein [Pyrococcus sp. NA2]
gi|331034972|gb|AEC52784.1| fmu protein [Pyrococcus sp. NA2]
Length = 451
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 53/85 (62%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G+I +Q S V + L+PQ GE ++D+ AAPGGKTT +A L++++G++ A D ++
Sbjct: 240 KGKIIVQEEASAVASIVLNPQPGEIVVDLAAAPGGKTTHMAELMKNKGKIYAFDIDKMRM 299
Query: 300 MDIQKLAAEMGLKCITTYKLDALKA 324
+++ MG+K + DA KA
Sbjct: 300 KRLKEFVQRMGIKIVKPIIKDARKA 324
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 12/72 (16%)
Query: 427 DRVLLDAPCSALG-------LRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIV 479
D+VLLDAPC++ G LR RL EE I+ + + QR + + A +LV+PGG ++
Sbjct: 334 DKVLLDAPCTSSGTIGKNPELRWRL--REEKIKEM---AELQRELLESAAKLVKPGGRLL 388
Query: 480 YSTCTINPGENE 491
Y+TC+I ENE
Sbjct: 389 YTTCSIFKEENE 400
>gi|408356908|ref|YP_006845439.1| rRNA methyltransferase [Amphibacillus xylanus NBRC 15112]
gi|407727679|dbj|BAM47677.1| putative rRNA methyltransferase [Amphibacillus xylanus NBRC 15112]
Length = 452
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 52/89 (58%), Gaps = 5/89 (5%)
Query: 410 CLGGRAENSKGFSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFD 466
+ GR N K + P +FDR+L+DAPCS G+ +P + A+ T + + N Q + +
Sbjct: 308 AIDGRQLNQK-YEPETFDRILVDAPCSGFGVIRTKPDIKYAK-TAKDVDNLAHVQYELLE 365
Query: 467 QAVQLVRPGGIIVYSTCTINPGENEALCA 495
+ L++ G ++YSTCT++P ENE +
Sbjct: 366 KIAPLLKKNGKLLYSTCTVDPTENEVVVT 394
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 60/110 (54%), Gaps = 5/110 (4%)
Query: 211 RAGIFRASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCA 270
+A +F +++GI ++ I P F G + +Q+ S++ LD ++ + +LD C+
Sbjct: 206 KASLF-SNQGIIIE-KGHILDHPLFK---SGSLTIQDQSSMLVVEMLDIKQDQIVLDACS 260
Query: 271 APGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
APGGK T I L + G V A D KV +++ A ++GL I+T +D
Sbjct: 261 APGGKATHIGEKLNNTGRVYAYDLHQKKVNLVKRKAEQLGLINISTAAID 310
>gi|427736995|ref|YP_007056539.1| ribosomal RNA small subunit methyltransferase RsmB [Rivularia sp.
PCC 7116]
gi|427372036|gb|AFY55992.1| ribosomal RNA small subunit methyltransferase RsmB [Rivularia sp.
PCC 7116]
Length = 459
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 52/86 (60%), Gaps = 3/86 (3%)
Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
I LP F EG +Q+ + + ++ L+PQ E I+D CAAPGGKTT IA L+ D G+
Sbjct: 237 IKNLPGFN---EGWWTVQDSSAQLVSYLLNPQPHEVIIDACAAPGGKTTHIAELMGDTGQ 293
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKCI 314
+ A DR+ +++ +Q+ + LK +
Sbjct: 294 IYACDRTESRLRKLQQNTQRLNLKSV 319
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 9/111 (8%)
Query: 385 ERTYVSKADTRKNMRRMRNGPGRNQCLGGRAENSKGFS--PNSFDRVLLDAPCSALGLRP 442
+RT ++N +R+ N CLG +S+ + S D+VLLD PCS LG
Sbjct: 298 DRTESRLRKLQQNTQRL-NLKSVEVCLG----DSRSLTQFEKSADKVLLDVPCSGLGTLH 352
Query: 443 RLFAAE--ETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENE 491
R A +T +++ Q + + V+ G +VYSTCT++P ENE
Sbjct: 353 RHADARWRQTPDNIKELCVLQAELLLHSSTFVKDSGSLVYSTCTLHPDENE 403
>gi|118444654|ref|YP_878315.1| sun protein [Clostridium novyi NT]
gi|118135110|gb|ABK62154.1| sun protein [Clostridium novyi NT]
Length = 443
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 67/115 (58%), Gaps = 3/115 (2%)
Query: 219 EGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTA 278
E I ++ I + P F EG+I +Q+ +++ A ++D ++G +LD+C+APGGKTT
Sbjct: 212 EAIVINKGKSIEKNPLFK---EGKITVQDESAMLVAPSIDAKEGATVLDLCSAPGGKTTH 268
Query: 279 IASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESND 333
I+ ++ + G V A D NK+ +++ A +G+ I+ ++DA K + S D
Sbjct: 269 ISEIMNNTGIVKAFDIHENKLSLVKENAKRLGIDNISCAEMDASKFNKELENSAD 323
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 424 NSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
NS D VL+D PCS LG+ +P + ++ I+S ++ Q+++ + A + V+ G ++Y
Sbjct: 320 NSADMVLIDVPCSGLGIIRKKPEIKYTKD-IKSTKDIVAIQKKIMENAAKYVKKEGTLLY 378
Query: 481 STCTINPGENE 491
STCTIN ENE
Sbjct: 379 STCTINKEENE 389
>gi|422335244|ref|ZP_16416245.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
4_1_47FAA]
gi|373243729|gb|EHP63228.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
4_1_47FAA]
Length = 481
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 187 PEMFDAILLDAPCSGEGVMRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 246
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 247 STCTLNQEENEAVC 260
Score = 45.1 bits (105), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 239 LEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296
L G ++Q S++ AL D +R++D+ AAPG KTT IA+ + +EG ++A + S
Sbjct: 95 LSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGAILANEFSA 154
Query: 297 NKVMDIQKLAAEMGLKCITTYKLD 320
++V + + G++ + D
Sbjct: 155 SRVKVLHANISRCGIRNVALTHFD 178
>gi|260589041|ref|ZP_05854954.1| NOL1/NOP2/sun family protein [Blautia hansenii DSM 20583]
gi|260540820|gb|EEX21389.1| NOL1/NOP2/sun family protein [Blautia hansenii DSM 20583]
Length = 459
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Query: 421 FSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGII 478
+ P FD++L+DAPCS G+ + +T R GK QR + QA+ +++PGG +
Sbjct: 168 YFPEFFDKILVDAPCSGEGMFRKDPDVAKTWDETRPEFFGKLQREIATQAISMLKPGGEL 227
Query: 479 VYSTCTINPGENEALCA 495
+YSTCT +P ENE L +
Sbjct: 228 LYSTCTFSPIENEGLIS 244
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 220 GIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAI 279
G D ++R + P ++ G +LQ ++ A+ GE +LD+CAAPGGK T +
Sbjct: 64 GFFYDENDRPSRHPYYF---AGLYYLQEPSAMTPANRFSVNPGEYVLDLCAAPGGKATEL 120
Query: 280 ASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK 312
+ L+ G +VA D S+++ + + G+K
Sbjct: 121 GAKLQGNGFLVANDISNSRAKALLRNLELFGIK 153
>gi|331083252|ref|ZP_08332365.1| hypothetical protein HMPREF0992_01289 [Lachnospiraceae bacterium
6_1_63FAA]
gi|330404333|gb|EGG83878.1| hypothetical protein HMPREF0992_01289 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 459
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Query: 421 FSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGII 478
+ P FD++L+DAPCS G+ + +T R GK QR + QA+ +++PGG +
Sbjct: 168 YFPEFFDKILVDAPCSGEGMFRKDPDVAKTWDETRPEFFGKLQREIATQAISMLKPGGEL 227
Query: 479 VYSTCTINPGENEALCA 495
+YSTCT +P ENE L +
Sbjct: 228 LYSTCTFSPIENEGLIS 244
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 220 GIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAI 279
G D ++R + P ++ G +LQ ++ A+ GE +LD+CAAPGGK T +
Sbjct: 64 GFFYDENDRPSRHPYYF---AGLYYLQEPSAMTPANRFSVNPGEYVLDLCAAPGGKATEL 120
Query: 280 ASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK 312
+ L+ G +VA D S+++ + + G+K
Sbjct: 121 GAKLQGNGFLVANDISNSRAKALLRNLELFGIK 153
>gi|448491986|ref|ZP_21608654.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum
californiensis DSM 19288]
gi|445692204|gb|ELZ44385.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum
californiensis DSM 19288]
Length = 319
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 54/104 (51%), Gaps = 5/104 (4%)
Query: 223 VDMHNRIFQLPS-----FYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTT 277
VD H+ +F+LP + + G Q S++ AL P+ GER+ D CAAPG KTT
Sbjct: 55 VDWHDGLFRLPEGNPGGNWPYVHGWTHGQEEVSVLPTLALAPRPGERVWDACAAPGSKTT 114
Query: 278 AIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
IA + DEG VVA D + ++ ++ A +G+ DA
Sbjct: 115 QIADAMDDEGTVVANDNNLGRLSALRHNAERLGITNAIVTNQDA 158
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 4/83 (4%)
Query: 414 RAENSKGFSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQ 470
R ++K + + FDR L+DAPCS G P + + T+ + Q+ + +AVQ
Sbjct: 159 RNFSTKPLAFDEFDRALVDAPCSCEGTCRKNPDVLD-QWTLDHVHAVAGIQKGVLARAVQ 217
Query: 471 LVRPGGIIVYSTCTINPGENEAL 493
RPGG++VYSTCT P ENEA+
Sbjct: 218 ATRPGGVVVYSTCTFAPEENEAV 240
>gi|365904090|ref|ZP_09441849.1| Fmu (Sun) domain-containing protein [Lactobacillus versmoldensis
KCTC 3814]
Length = 450
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 9/82 (10%)
Query: 416 ENSKGFSPNSFDRVLLDAPCSALGLRPR-----LFAAEETIQSLRNHGKYQRRMFDQAVQ 470
E KGF+ FD++L+DAPCS G+ + + + E ++ N QR + D A +
Sbjct: 159 EFEKGFN-EYFDKILVDAPCSGEGMFRKDPESVKYWSPEYVEQCANR---QRHILDSAYK 214
Query: 471 LVRPGGIIVYSTCTINPGENEA 492
L++PGG +VYSTCT +P ENEA
Sbjct: 215 LLKPGGRLVYSTCTFSPEENEA 236
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 44/75 (58%)
Query: 237 DVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296
D + G ++ Q ++ A + P+K +RILD+CAAPG K+T +A+L+ + +V+ + +H
Sbjct: 73 DHIAGYLYSQEPSAMYVAELVAPEKNDRILDLCAAPGSKSTYLATLMDPQDILVSNEINH 132
Query: 297 NKVMDIQKLAAEMGL 311
+ + MG+
Sbjct: 133 QRAKVLSSNIERMGI 147
>gi|410582920|ref|ZP_11320026.1| NOL1/NOP2/sun family putative RNA methylase [Thermaerobacter
subterraneus DSM 13965]
gi|410505740|gb|EKP95249.1| NOL1/NOP2/sun family putative RNA methylase [Thermaerobacter
subterraneus DSM 13965]
Length = 487
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 46/78 (58%), Gaps = 14/78 (17%)
Query: 425 SFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRR--------MFDQAVQLVRPGG 476
+FDRVL+DAPCSA G A + ++ G++QRR + + + L RPGG
Sbjct: 170 AFDRVLVDAPCSAEG------NARRSARAREGAGRHQRRRLPAVQEALLRRGLALARPGG 223
Query: 477 IIVYSTCTINPGENEALC 494
++VYSTCT P ENEA+
Sbjct: 224 VVVYSTCTFAPEENEAVV 241
Score = 45.1 bits (105), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G +LQ + V ALDP+ GE +LD+ AAPGGK+T +A + G VVA D ++
Sbjct: 82 GWFYLQEAAAAVPVLALDPRPGEVVLDLSAAPGGKSTQMAERMGGRGMVVANDPDPRRLA 141
Query: 301 DIQKLAAEMGLKCITTYKLD 320
+ +G+ + D
Sbjct: 142 ALAHNLQRLGITMAVVTRAD 161
>gi|397690734|ref|YP_006527988.1| Ribosomal RNA small subunit methyltransferase B [Melioribacter
roseus P3M]
gi|395812226|gb|AFN74975.1| Ribosomal RNA small subunit methyltransferase B [Melioribacter
roseus P3M]
Length = 457
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 48/67 (71%)
Query: 257 LDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITT 316
L P+ G R+LD+CAAPGGK+ IA ++++EGE+VA+DR +++ ++K + + + T
Sbjct: 263 LKPEPGMRVLDLCAAPGGKSAFIADMMKNEGEIVALDRFDSRLKILEKNLERLKVTNVRT 322
Query: 317 YKLDALK 323
+ +DAL+
Sbjct: 323 HAIDALE 329
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Query: 426 FDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYST 482
FDRVL+DAPCS LG +P L ++ + +R Q + + L++PGG +VYST
Sbjct: 336 FDRVLVDAPCSGLGTLTKKPDL-KWKKDLGDIRKIVNIQYDLLTKGASLLKPGGSLVYST 394
Query: 483 CTINPGENEALC 494
CTI P EN L
Sbjct: 395 CTIEPEENYELI 406
>gi|397489213|ref|XP_003815627.1| PREDICTED: LOW QUALITY PROTEIN: putative methyltransferase NSUN5
[Pan paniscus]
Length = 468
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 70/139 (50%), Gaps = 14/139 (10%)
Query: 194 YFERSGL-YIGQGTAMMSRAGIFRASEG---IAVDMHNRIFQLPSFYDVLE------GEI 243
YF++ G Y G+ +++ RA +G + + + P+ D+ E G +
Sbjct: 151 YFKKQGFSYQGRASSLDD----LRALKGKHFLLDSLMPELLVFPAQTDLREHPLYRAGHL 206
Query: 244 FLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQ 303
LQ+ S + A LDP G ++D CAAPG KT+ +A+LL+++G++ A D ++ +
Sbjct: 207 ILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMA 266
Query: 304 KLAAEMGLKCITTYKLDAL 322
L A G+ C + D L
Sbjct: 267 TLLARAGVSCCELAEEDFL 285
>gi|197336252|ref|YP_002156071.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio fischeri MJ11]
gi|226725346|sp|B5FE06.1|RSMF_VIBFM RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|197317742|gb|ACH67189.1| ribosomal RNA small subunit methyltransferase F [Vibrio fischeri
MJ11]
Length = 473
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 420 GFSPNSFDRVLLDAPCSALG-LRPRLFAAEE-TIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
G+ P +FD +LLDAPCS G +R A + +S+ G QR + + A ++PGG+
Sbjct: 181 GWLPETFDSILLDAPCSGEGTIRKDPDAMHNWSPESVIEIGDTQRDLIESAFHALKPGGV 240
Query: 478 IVYSTCTINPGENEALC 494
+VYSTCT+N EN+ +C
Sbjct: 241 MVYSTCTLNHEENQNIC 257
Score = 38.9 bits (89), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 231 QLPSFYDVLEGEIFLQNLPSI--VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
+L S + + G ++Q S+ VTA D E LDM +APG KTT +A+ ++++G
Sbjct: 84 KLGSTAEHMAGLFYIQEASSMMPVTALLKDNDDIEMALDMASAPGSKTTQLAAGMKNQGA 143
Query: 289 VVAVDRSHNKV 299
+VA + S ++V
Sbjct: 144 LVANEFSSSRV 154
>gi|225461943|ref|XP_002266112.1| PREDICTED: ribosomal RNA small subunit methyltransferase B [Vitis
vinifera]
gi|296089930|emb|CBI39749.3| unnamed protein product [Vitis vinifera]
Length = 525
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 47/75 (62%), Gaps = 8/75 (10%)
Query: 422 SPNSFDRVLLDAPCSALGLRP-----RLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGG 476
+P D+VLLDAPCS LG+ R + E ++ L+N Q + D A LV+PGG
Sbjct: 400 NPVKSDKVLLDAPCSGLGVLSKRADLRWNRSLEDMEQLKN---LQDELLDAAAILVKPGG 456
Query: 477 IIVYSTCTINPGENE 491
++VYSTC+I+P ENE
Sbjct: 457 VLVYSTCSIDPEENE 471
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
EG +Q+ + + +DPQ GE I+D CAAPGGKT +AS L +G V A+D + ++
Sbjct: 311 EGLCSVQDESAGLVVSVVDPQPGESIIDCCAAPGGKTIFMASCLSGQGMVHAIDINKGRL 370
Query: 300 MDIQKLAAEMGL-KCITTYKLD 320
+++ A + + ITT D
Sbjct: 371 RIVKETAKLLLVDDVITTVHAD 392
>gi|392979604|ref|YP_006478192.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Enterobacter cloacae
subsp. dissolvens SDM]
gi|392325537|gb|AFM60490.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Enterobacter cloacae
subsp. dissolvens SDM]
Length = 480
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAA--EETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
P +FD +LLDAPCS G+ + A +++S + QR + D A+ +RPGG +VY
Sbjct: 185 PETFDAILLDAPCSGEGVVRKDPDALKNWSVESNLDIAATQRELIDSALHALRPGGTLVY 244
Query: 481 STCTINPGENEALC 494
STCT+N ENE +C
Sbjct: 245 STCTLNRDENEDVC 258
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 239 LEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296
L G ++Q S++ AL D ER++D+ AAPG KTT IA+ + + G ++A + S
Sbjct: 93 LSGLFYIQEASSMLPVAALFADGNAPERVMDVAAAPGSKTTQIAARMANRGAILANEFSA 152
Query: 297 NKVMDIQKLAAEMGLKCITTYKLD 320
++V + + G++ + D
Sbjct: 153 SRVKVLHANISRCGIQNVALTHFD 176
>gi|340502431|gb|EGR29121.1| nucleolar protein 1, putative [Ichthyophthirius multifiliis]
Length = 479
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 424 NSFDRVLLDAPCSALGL--RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYS 481
N+FDRVLLDAPC+ LG+ R + A + + + H QR + A+ + GG IVYS
Sbjct: 334 NNFDRVLLDAPCTGLGIISRDQSIKATKQLIDVYKHSHLQRELILSAIDCCKKGGYIVYS 393
Query: 482 TCTINPGENEAL 493
TC+++ ENE++
Sbjct: 394 TCSVSVQENESV 405
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 9/85 (10%)
Query: 237 DVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVD--- 293
+ L G LQ+ S + AL PQ+ E+ILDM AAPGGKTT +A L+++ G + A D
Sbjct: 242 EYLAGYYMLQSASSFIPVIALAPQQNEKILDMSAAPGGKTTYVAQLMKNTGILFANDIKS 301
Query: 294 -RSHNKVMDIQKLAAEMGL-KCITT 316
R+ + ++Q+ MG+ C+ T
Sbjct: 302 ERNKALIYNVQR----MGITNCVVT 322
>gi|315640285|ref|ZP_07895402.1| RNA methyltransferase Sun [Enterococcus italicus DSM 15952]
gi|315483947|gb|EFU74426.1| RNA methyltransferase Sun [Enterococcus italicus DSM 15952]
Length = 449
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 418 SKGFSPNSFDRVLLDAPCSALGL--RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPG 475
S+ F+P +FDR+L+DAPCS +GL R ++T Q N K Q + + ++ G
Sbjct: 321 SEVFAPETFDRILVDAPCSGIGLIRRKPDIKYQKTPQDFTNLPKIQLSILESVAPTLKSG 380
Query: 476 GIIVYSTCTINPGENEALCA 495
G +VYSTCTI ENE + A
Sbjct: 381 GRMVYSTCTIMEEENEQVVA 400
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 54/86 (62%), Gaps = 3/86 (3%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDE--GEVVAVDRSHNK 298
G++ +Q+ S++ A L + G+++LD CAAPGGKTT IA+ L E GEV A+D +K
Sbjct: 234 GQLTIQDESSMLVAPMLAIEPGDKVLDACAAPGGKTTHIATYLDAEKGGEVRALDIHPHK 293
Query: 299 VMDIQKLAAEMGLKCIT-TYKLDALK 323
V I++ A + ++ + +LDA K
Sbjct: 294 VALIEENAMRLHVETVVHAQQLDARK 319
>gi|297617049|ref|YP_003702208.1| sun protein [Syntrophothermus lipocalidus DSM 12680]
gi|297144886|gb|ADI01643.1| sun protein [Syntrophothermus lipocalidus DSM 12680]
Length = 460
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 45/70 (64%), Gaps = 8/70 (11%)
Query: 427 DRVLLDAPCSALG-LR----PRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYS 481
D VLLDAPCS LG LR R +E+ I L + Q+R+ + QLVRPGG++VYS
Sbjct: 333 DVVLLDAPCSGLGVLRRRSDARWRKSEKDITVL---SELQKRLLKRGAQLVRPGGVLVYS 389
Query: 482 TCTINPGENE 491
TCT+ P ENE
Sbjct: 390 TCTLEPEENE 399
>gi|114793858|pdb|2FRX|A Chain A, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
gi|114793859|pdb|2FRX|B Chain B, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
gi|114793860|pdb|2FRX|C Chain C, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
gi|114793861|pdb|2FRX|D Chain D, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
Length = 479
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 185 PEXFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 244
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 245 STCTLNQEENEAVC 258
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Query: 219 EGIAVDMHNR-IFQLPSFYDVLEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGK 275
EG ++ N L S + L G ++Q S + AL D +R+ D+ AAPG K
Sbjct: 72 EGFWIERDNEDALPLGSTAEHLSGLFYIQEASSXLPVAALFADGNAPQRVXDVAAAPGSK 131
Query: 276 TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
TT I++ +EG ++A + S ++V + + G+ + D
Sbjct: 132 TTQISARXNNEGAILANEFSASRVKVLHANISRCGISNVALTHFD 176
>gi|397165222|ref|ZP_10488675.1| ribosomal RNA small subunit methyltransferase F [Enterobacter
radicincitans DSM 16656]
gi|396093329|gb|EJI90886.1| ribosomal RNA small subunit methyltransferase F [Enterobacter
radicincitans DSM 16656]
Length = 464
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 43/80 (53%), Gaps = 14/80 (17%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--------GKYQRRMFDQAVQLVRP 474
P FD +LLDAPCS G+ + +L+N QR + D A +RP
Sbjct: 170 PEMFDAILLDAPCSGEGV------VRKDADALKNWSVASNLEIAATQRELIDSAFHALRP 223
Query: 475 GGIIVYSTCTINPGENEALC 494
GG +VYSTCT+N ENEA+C
Sbjct: 224 GGTLVYSTCTLNRDENEAIC 243
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 239 LEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296
L G ++Q S++ AL D + +R++D+ AAPG KTT IA+ + + G ++A + S
Sbjct: 78 LSGMFYIQEASSMLPVAALFADGEMPQRVMDVAAAPGSKTTQIAARMNNSGTILANEFSA 137
Query: 297 NKVMDIQKLAAEMGLKCITTYKLD 320
++V + + G++ + D
Sbjct: 138 SRVKVLHANISRNGIRNVALTHFD 161
>gi|421894377|ref|ZP_16324866.1| ribosomal RNA small subunit methyltransferase B [Pediococcus
pentosaceus IE-3]
gi|385272681|emb|CCG90238.1| ribosomal RNA small subunit methyltransferase B [Pediococcus
pentosaceus IE-3]
Length = 444
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 56/95 (58%)
Query: 239 LEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNK 298
++G++ +Q+ +++ A + +KG+++LD CAAPGGKTT IA+++ + GEV D +
Sbjct: 230 IDGDLTVQDESAMLVAETMHLEKGQKVLDACAAPGGKTTQIAAMIGETGEVTGWDIYQKR 289
Query: 299 VMDIQKLAAEMGLKCITTYKLDALKAVRRKNESND 333
V IQ A M L + T DA+ +ES D
Sbjct: 290 VQLIQDNAQRMHLDNVKTEVQDAIAFREDLDESFD 324
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 43/70 (61%), Gaps = 4/70 (5%)
Query: 425 SFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYS 481
SFDR+L+DAPCS +GL +P + + S H + Q ++ D ++++ GG++ YS
Sbjct: 322 SFDRILVDAPCSGIGLMRRKPEIRYLKSKKDSSDLH-QLQLKILDNIAKMLKVGGVLTYS 380
Query: 482 TCTINPGENE 491
TCTI EN+
Sbjct: 381 TCTILRKENQ 390
>gi|423686021|ref|ZP_17660829.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio fischeri SR5]
gi|371494089|gb|EHN69687.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio fischeri SR5]
Length = 473
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 420 GFSPNSFDRVLLDAPCSALG-LRPRLFAAEE-TIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
G+ P +FD +LLDAPCS G +R A + +S+ G QR + + A ++PGG+
Sbjct: 181 GWLPETFDSILLDAPCSGEGTIRKDPDAMHNWSPESVIEIGDTQRDLIESAFHALKPGGV 240
Query: 478 IVYSTCTINPGENEALC 494
+VYSTCT+N EN+ +C
Sbjct: 241 MVYSTCTLNHEENQNIC 257
Score = 38.9 bits (89), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 231 QLPSFYDVLEGEIFLQNLPSI--VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
+L S + + G ++Q S+ VTA D E LDM +APG KTT +A+ ++++G
Sbjct: 84 KLGSTAEHMAGLFYIQEASSMMPVTALLKDNDDIEMALDMASAPGSKTTQLAAGMKNQGA 143
Query: 289 VVAVDRSHNKV 299
+VA + S ++V
Sbjct: 144 LVANEFSSSRV 154
>gi|296101829|ref|YP_003611975.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Enterobacter cloacae
subsp. cloacae ATCC 13047]
gi|295056288|gb|ADF61026.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Enterobacter cloacae
subsp. cloacae ATCC 13047]
Length = 480
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAA--EETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
P +FD +LLDAPCS G+ + A +++S + QR + D A +RPGG +VY
Sbjct: 185 PEAFDAILLDAPCSGEGVVRKDPDALKNWSVESNLDIASTQRELIDSAFHALRPGGTLVY 244
Query: 481 STCTINPGENEALC 494
STCT+N ENE +C
Sbjct: 245 STCTLNRDENEEVC 258
Score = 43.5 bits (101), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 239 LEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296
L G ++Q S++ AL D ER++D+ AAPG KTT IA+ + + G ++A + S
Sbjct: 93 LSGLFYIQEASSMLPVAALFADGNAPERVMDVAAAPGSKTTQIAARMANRGAILANEFSA 152
Query: 297 NKVMDIQKLAAEMGLKCITTYKLD 320
++V + + G++ + D
Sbjct: 153 SRVKVLHANISRCGIQNVALTHFD 176
>gi|433462308|ref|ZP_20419895.1| Sun protein [Halobacillus sp. BAB-2008]
gi|432188996|gb|ELK46138.1| Sun protein [Halobacillus sp. BAB-2008]
Length = 448
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 54/95 (56%), Gaps = 3/95 (3%)
Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
I + P F EG + +Q+ S++ A +D G +LD C+APGGKTT IA + DEGE
Sbjct: 222 ILKHPLFA---EGYVTVQDQSSMLVAEMMDLASGMTVLDACSAPGGKTTHIAEKMADEGE 278
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323
++A D K ++K A ++ L IT + D+ K
Sbjct: 279 ILAYDLHEKKAKLVEKKAKQLQLTSITAGQADSRK 313
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 11/88 (12%)
Query: 412 GGRAENSK---GFSPNSFDRVLLDAPCSALGL---RP--RLFAAEETIQSLRNHGKYQRR 463
G+A++ K + FDR+LLDAPCS LG+ +P + E+ I SLR Q
Sbjct: 306 AGQADSRKLGEKHAAEHFDRILLDAPCSGLGVLRGKPDIKYHKTEQDIYSLR---LIQDD 362
Query: 464 MFDQAVQLVRPGGIIVYSTCTINPGENE 491
+ D+ L++ GG +VYSTCT++ ENE
Sbjct: 363 LLDEMAPLLKSGGKLVYSTCTVDRHENE 390
>gi|227828150|ref|YP_002829930.1| RNA methylase [Sulfolobus islandicus M.14.25]
gi|229585379|ref|YP_002843881.1| RNA methylase [Sulfolobus islandicus M.16.27]
gi|238620340|ref|YP_002915166.1| RNA methylase [Sulfolobus islandicus M.16.4]
gi|385773820|ref|YP_005646387.1| RNA methylase [Sulfolobus islandicus HVE10/4]
gi|385776455|ref|YP_005649023.1| RNA methylase [Sulfolobus islandicus REY15A]
gi|227459946|gb|ACP38632.1| RNA methylase, NOL1/NOP2/sun family [Sulfolobus islandicus M.14.25]
gi|228020429|gb|ACP55836.1| RNA methylase, NOL1/NOP2/sun family [Sulfolobus islandicus M.16.27]
gi|238381410|gb|ACR42498.1| RNA methylase, NOL1/NOP2/sun family [Sulfolobus islandicus M.16.4]
gi|323475203|gb|ADX85809.1| RNA methylase, NOL1/NOP2/sun family [Sulfolobus islandicus REY15A]
gi|323477935|gb|ADX83173.1| RNA methylase, NOL1/NOP2/sun family [Sulfolobus islandicus HVE10/4]
Length = 339
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 60/99 (60%), Gaps = 1/99 (1%)
Query: 232 LPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVA 291
L S + L G +Q L S+V A+ L+P + + +LDM AAPGGKTT ++ +++++G VVA
Sbjct: 110 LGSTLEYLMGYYHIQGLASMVPAYVLNPSQDDFVLDMAAAPGGKTTQVSQIMQNKGLVVA 169
Query: 292 VDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNE 330
V++ +++ + +G + + K D L +RR N+
Sbjct: 170 VEKKRSRIRALLSNVNRLGAENVVLVKTDVLN-LRRINK 207
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 417 NSKGFSPNSFDRVLLDAPCSALGLRPR--LFAAEETIQSLRNHGKYQRRMFDQAVQLVRP 474
N + + FDR+LLDAPCS GL + + TI LR+ Q + + A +L++
Sbjct: 201 NLRRINKFQFDRILLDAPCSGEGLIQKDPTRRYKTTIDDLRDFAYSQLSLIEIAYELLKE 260
Query: 475 GGIIVYSTCTINPGENEAL 493
GG IVYSTC++ P ENE +
Sbjct: 261 GGYIVYSTCSVAPEENELI 279
>gi|340750427|ref|ZP_08687271.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium
mortiferum ATCC 9817]
gi|229420063|gb|EEO35110.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium
mortiferum ATCC 9817]
Length = 433
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 54/84 (64%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G+I +Q+ S ++A L+P+ E +LD C+APGGKT + L+ + GE++A+D +K+
Sbjct: 220 DGKIIVQDASSYLSARNLNPKPDESVLDTCSAPGGKTAVLGELMENRGELLALDIYPHKL 279
Query: 300 MDIQKLAAEMGLKCITTYKLDALK 323
I++ + G+ + T K+DA K
Sbjct: 280 KLIEENCHKCGVDIVRTVKMDARK 303
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 426 FDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYST 482
FD++L+DAPCS G+ +P + + +++ K Q + + A Q+++ G +VYST
Sbjct: 311 FDKILVDAPCSGYGVLRKKPEAIYNKNS-ENVEELAKLQFEILESASQVLKDNGELVYST 369
Query: 483 CTINPGEN 490
CTI EN
Sbjct: 370 CTILKEEN 377
>gi|227830857|ref|YP_002832637.1| RNA methylase [Sulfolobus islandicus L.S.2.15]
gi|229579743|ref|YP_002838142.1| RNA methylase [Sulfolobus islandicus Y.G.57.14]
gi|284998364|ref|YP_003420132.1| RNA methylase [Sulfolobus islandicus L.D.8.5]
gi|227457305|gb|ACP35992.1| RNA methylase, NOL1/NOP2/sun family [Sulfolobus islandicus
L.S.2.15]
gi|228010458|gb|ACP46220.1| RNA methylase, NOL1/NOP2/sun family [Sulfolobus islandicus
Y.G.57.14]
gi|284446260|gb|ADB87762.1| putative RNA methylase, NOL1/NOP2/sun family [Sulfolobus islandicus
L.D.8.5]
Length = 339
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 60/99 (60%), Gaps = 1/99 (1%)
Query: 232 LPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVA 291
L S + L G +Q L S+V A+ L+P + + +LDM AAPGGKTT ++ +++++G VVA
Sbjct: 110 LGSTLEYLMGYYHIQGLASMVPAYVLNPSQDDFVLDMAAAPGGKTTQVSQIMQNKGLVVA 169
Query: 292 VDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNE 330
V++ +++ + +G + + K D L +RR N+
Sbjct: 170 VEKKRSRIRALLSNVNRLGAENVVLVKTDVLN-LRRINK 207
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 417 NSKGFSPNSFDRVLLDAPCSALGLRPR--LFAAEETIQSLRNHGKYQRRMFDQAVQLVRP 474
N + + FDR+LLDAPCS GL + + TI LR+ Q + + A +L++
Sbjct: 201 NLRRINKFQFDRILLDAPCSGEGLIQKDPTRRYKTTIDDLRDFAYSQLSLIEIAYELLKE 260
Query: 475 GGIIVYSTCTINPGENEAL 493
GG IVYSTC++ P ENE +
Sbjct: 261 GGYIVYSTCSVAPEENELI 279
>gi|238854793|ref|ZP_04645123.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
jensenii 269-3]
gi|260664024|ref|ZP_05864877.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
jensenii SJ-7A-US]
gi|238832583|gb|EEQ24890.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
jensenii 269-3]
gi|260561910|gb|EEX27879.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
jensenii SJ-7A-US]
Length = 437
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 50/81 (61%), Gaps = 4/81 (4%)
Query: 418 SKGFSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRP 474
++ FS F+++L+DAPCS LGL +P + ++TI+ + N + Q + D QL++
Sbjct: 312 AEHFSDTKFNKILVDAPCSGLGLLRRKPEI-RYDKTIKDVHNLARIQLAILDNVAQLLKK 370
Query: 475 GGIIVYSTCTINPGENEALCA 495
G +VYSTC+I ENE + A
Sbjct: 371 NGELVYSTCSITIEENEQVIA 391
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G+I +Q+ + + D ++ + +LD CAAPGGKTT +A L G+V ++D K+
Sbjct: 228 GQITIQDEAASLVVDCFDLRENDHVLDTCAAPGGKTTQLAENL-SHGKVTSLDIHKKKLN 286
Query: 301 DIQKLAAEMGLKC-ITTYKLDALKA 324
I+K A M + + T LDA KA
Sbjct: 287 LIKKYAQRMHVDDRVETLALDARKA 311
>gi|156383674|ref|XP_001632958.1| predicted protein [Nematostella vectensis]
gi|156220021|gb|EDO40895.1| predicted protein [Nematostella vectensis]
Length = 415
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 49/81 (60%), Gaps = 4/81 (4%)
Query: 237 DVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVD--- 293
+ L G +Q S++ AL PQ+ ER+LDMCAAPGGKTT +A+L+++ G VVA D
Sbjct: 178 EYLAGHYMIQGSSSMLPVMALAPQEKERVLDMCAAPGGKTTYLAALMKNTGIVVANDAKK 237
Query: 294 -RSHNKVMDIQKLAAEMGLKC 313
R+ V +I +L + C
Sbjct: 238 ERTKALVANIHRLGVTNTVVC 258
Score = 39.7 bits (91), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 426 FDRVLLDAPCSALGLRPR--LFAAEETIQSLRNHGKYQRRMFDQAVQLVRP----GGIIV 479
FDR LLDAPCS G+ + +T + + Q+ + A+ V GG IV
Sbjct: 272 FDRTLLDAPCSGTGVISKDPSVKTNKTEKDILRCSHVQKELILAAIDSVDAKSPTGGYIV 331
Query: 480 YSTCTINPGENE 491
YSTC+I E+E
Sbjct: 332 YSTCSIMVEEDE 343
>gi|336063747|ref|YP_004558606.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
pasteurianus ATCC 43144]
gi|334281947|dbj|BAK29520.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
pasteurianus ATCC 43144]
Length = 440
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 45/73 (61%), Gaps = 4/73 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F+P+SFD++L+DAPCS +GL +P + +E Q + Q ++ D Q +R GGI
Sbjct: 316 FAPDSFDKILVDAPCSGIGLIRRKPDIKYNKEN-QDFSALQEIQLQILDSVCQTLRKGGI 374
Query: 478 IVYSTCTINPGEN 490
I YSTCTI EN
Sbjct: 375 ITYSTCTIFDEEN 387
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G I +Q+ S + A L+ Q E ILD CAAPGGKTT +AS L+ EG + A+D +K+
Sbjct: 229 GNITIQDESSQLVAPTLNIQGNEDILDACAAPGGKTTHMASYLK-EGHITALDLYDHKLT 287
Query: 301 DIQKLAAEMGL-KCITTYKLDA 321
+ A + + I+T K+DA
Sbjct: 288 LVMDNAKRLHVADKISTQKMDA 309
>gi|288904707|ref|YP_003429928.1| RNA-binding Sun protein [Streptococcus gallolyticus UCN34]
gi|288731432|emb|CBI12984.1| putative RNA-binding Sun protein [Streptococcus gallolyticus UCN34]
Length = 440
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 45/73 (61%), Gaps = 4/73 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F+P+SFD++L+DAPCS +GL +P + +E Q + Q ++ D Q +R GGI
Sbjct: 316 FAPDSFDKILVDAPCSGIGLIRRKPDIKYNKEN-QDFSALQEIQLQILDSVCQTLRKGGI 374
Query: 478 IVYSTCTINPGEN 490
I YSTCTI EN
Sbjct: 375 ITYSTCTIFDEEN 387
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 2/82 (2%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G+I +Q+ S + A L+ Q E ILD CAAPGGKTT +AS L+ EG + A+D +K+
Sbjct: 229 GDITIQDESSQLVAPTLNIQGNEDILDACAAPGGKTTHMASYLK-EGHITALDLYDHKLT 287
Query: 301 DIQKLAAEMGL-KCITTYKLDA 321
+ A + + I+T K+DA
Sbjct: 288 LVMDNARRLHVADKISTQKMDA 309
>gi|163745468|ref|ZP_02152828.1| rRNA methyltransferase RsmB [Oceanibulbus indolifex HEL-45]
gi|161382286|gb|EDQ06695.1| rRNA methyltransferase RsmB [Oceanibulbus indolifex HEL-45]
Length = 423
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 55/92 (59%), Gaps = 6/92 (6%)
Query: 227 NRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDE 286
++ +P F EG+ ++Q+ + + L P++GER+LD+CAAPGGKT +A+
Sbjct: 202 GQVSAMPGFA---EGDWWVQDAAAAIPVRVLAPKEGERVLDLCAAPGGKTMQLAAA---G 255
Query: 287 GEVVAVDRSHNKVMDIQKLAAEMGLKCITTYK 318
EV AVD+SH ++ +++ +GLK T K
Sbjct: 256 AEVTAVDQSHPRMQRVKENLTRVGLKAKTLTK 287
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 426 FDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYST 482
FD +LLDAPCSA G P L A++ + + Q + D A L++PGG +V+ T
Sbjct: 296 FDAILLDAPCSATGTIRRHPDLPHAKDG-SEFGDLIELQSELIDHAWSLLKPGGRLVFCT 354
Query: 483 CTINPGENE 491
C++ P E E
Sbjct: 355 CSLLPDEGE 363
>gi|354580541|ref|ZP_08999446.1| RNA methylase, NOL1/NOP2/sun family [Paenibacillus lactis 154]
gi|353202972|gb|EHB68421.1| RNA methylase, NOL1/NOP2/sun family [Paenibacillus lactis 154]
Length = 534
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 10/79 (12%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETI------QSLRNHGKYQRRMFDQAVQLVRPGG 476
P +F ++L+DAPCS G+ F +E++ S + QR + AV+++RPGG
Sbjct: 171 PEAFTKILIDAPCSGEGM----FRKDESMLKYWEESSPLTFAEMQRDILHSAVKMLRPGG 226
Query: 477 IIVYSTCTINPGENEALCA 495
+VYSTCT +P ENE + A
Sbjct: 227 TLVYSTCTFSPEENEGMIA 245
Score = 43.1 bits (100), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 38/64 (59%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G ++Q ++ L + G+ +LD+CAAPGGK+T IA+ L+ +G +V+ D ++
Sbjct: 83 GLYYIQEPSAMAPVELLGVEPGDVVLDLCAAPGGKSTQIAAKLQGKGVLVSNDLHPDRTK 142
Query: 301 DIQK 304
+ K
Sbjct: 143 ALAK 146
>gi|430750393|ref|YP_007213301.1| ribosomal RNA small subunit methyltransferase RsmB [Thermobacillus
composti KWC4]
gi|430734358|gb|AGA58303.1| ribosomal RNA small subunit methyltransferase RsmB [Thermobacillus
composti KWC4]
Length = 459
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 53/88 (60%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+GE +Q+ +++ A A DP+ G R+LD CAAPGGK+T +A L+ D G V+A D +K
Sbjct: 236 DGEWTVQDEAAMLVAEACDPEPGMRVLDCCAAPGGKSTHLAELMGDVGVVLANDIHPHKE 295
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRR 327
I + A +GL + T DA + RR
Sbjct: 296 RLIVEQAQRLGLTSVRTSVCDAAELPRR 323
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 415 AENSKGFSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQL 471
AE + S D VLLDAPCS G+ +P + ++ + + Q R+ A L
Sbjct: 318 AELPRRVGAESMDIVLLDAPCSGFGVIRRKPEIRWTKKP-EDIDEIAAVQHRLLAAASAL 376
Query: 472 VRPGGIIVYSTCTINPGENE 491
V+PGG++VYSTCT P ENE
Sbjct: 377 VKPGGLLVYSTCTFEPRENE 396
>gi|156083481|ref|XP_001609224.1| proliferating-cell nucleolar protein [Babesia bovis T2Bo]
gi|154796475|gb|EDO05656.1| proliferating-cell nucleolar protein, putative [Babesia bovis]
Length = 726
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 4/73 (5%)
Query: 426 FDRVLLDAPCSALGLR---PRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYST 482
FDRVL D PCS G P L+ + + L H + Q + +A+QL++PGG ++YST
Sbjct: 278 FDRVLADVPCSCDGTMRKAPELWKTWKPVGGLHMH-RLQLSIVKRAMQLLKPGGTLIYST 336
Query: 483 CTINPGENEALCA 495
C++NP ENEA+ +
Sbjct: 337 CSLNPLENEAIAS 349
>gi|427711378|ref|YP_007060002.1| ribosomal RNA small subunit methyltransferase RsmB [Synechococcus
sp. PCC 6312]
gi|427375507|gb|AFY59459.1| ribosomal RNA small subunit methyltransferase RsmB [Synechococcus
sp. PCC 6312]
Length = 458
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 52/86 (60%), Gaps = 2/86 (2%)
Query: 236 YDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRS 295
YD +G +Q+ + + + LDPQ GE I+D CAAPGGKTT IA ++D G V+A+DR
Sbjct: 242 YD--KGWWSVQDAAAQLVTYLLDPQPGETIIDACAAPGGKTTHIAERMQDRGTVIALDRV 299
Query: 296 HNKVMDIQKLAAEMGLKCITTYKLDA 321
+++ +++ + L C+ D+
Sbjct: 300 ASRLRKLKQNQQRLQLTCLQAQLADS 325
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 57/101 (56%), Gaps = 8/101 (7%)
Query: 398 MRRMRNGPGRNQ--CLGGRAENS---KGFSPNSFDRVLLDAPCSALGLRPRLFAAE--ET 450
+R+++ R Q CL + +S + P + DRVL+DAPCS LG R A +T
Sbjct: 303 LRKLKQNQQRLQLTCLQAQLADSTQIQTMLPLA-DRVLIDAPCSGLGTLHRHADARWRQT 361
Query: 451 IQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENE 491
+L Q ++ + A V+PGG++VY+TC+++P EN+
Sbjct: 362 PTTLAELVSLQAQLLENAATWVKPGGLMVYATCSLHPDENQ 402
>gi|317133047|ref|YP_004092361.1| sun protein [Ethanoligenens harbinense YUAN-3]
gi|315471026|gb|ADU27630.1| sun protein [Ethanoligenens harbinense YUAN-3]
Length = 436
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 3/84 (3%)
Query: 232 LPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVA 291
LP+F EG F+Q++ S + ALDPQ GE + D+CAAPGGK+ +A +R +G V A
Sbjct: 227 LPAFT---EGCFFVQDIASQMACAALDPQPGETVYDLCAAPGGKSFTLALHMRGQGMVRA 283
Query: 292 VDRSHNKVMDIQKLAAEMGLKCIT 315
D ++V I++ A +GL I
Sbjct: 284 FDLHAHRVRLIEEGAGWLGLSGIV 307
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 19/77 (24%)
Query: 427 DRVLLDAPCSALGL----------RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGG 476
DRVL D PCS LG+ P++F + + L+ H + D A L +PGG
Sbjct: 324 DRVLCDVPCSGLGVIRRKPEIRYKNPKIF---DGLPDLQYH-----ILCDGAANL-KPGG 374
Query: 477 IIVYSTCTINPGENEAL 493
++VYSTC +NP ENEA+
Sbjct: 375 VLVYSTCALNPAENEAV 391
>gi|325567768|ref|ZP_08144379.1| RNA methyltransferase Sun [Enterococcus casseliflavus ATCC 12755]
gi|325158541|gb|EGC70688.1| RNA methyltransferase Sun [Enterococcus casseliflavus ATCC 12755]
Length = 452
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Query: 416 ENSKGFSPNSFDRVLLDAPCSALGLRPRL--FAAEETIQSLRNHGKYQRRMFDQAVQLVR 473
E ++ F+P FDR+L+DAPCS LGL R +T + + QR + + A ++
Sbjct: 322 ETAQTFAPEQFDRILVDAPCSGLGLMRRKPDIKYSKTEADFQRLPRIQREILESAAPTLK 381
Query: 474 PGGIIVYSTCTINPGENEALCA 495
GI+VYSTCTI EN+ + A
Sbjct: 382 KSGIMVYSTCTILEEENQQVVA 403
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 51/85 (60%), Gaps = 3/85 (3%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLR--DEGEVVAVDRSHN 297
EG + +Q+ S++ A L + ++LD CAAPGGKTT IA+ L + +V A+D +
Sbjct: 236 EGLLTIQDESSMLVAPVLQVARDHQVLDACAAPGGKTTHIAAFLSAAEGSKVTALDIHAH 295
Query: 298 KVMDIQKLAAEMGLKCIT-TYKLDA 321
KV IQ+ A +G++ + T +DA
Sbjct: 296 KVKLIQQNAQRLGVEAVVETRVMDA 320
>gi|147921688|ref|YP_684492.1| tRNA/rRNA cytosine-C5-methylase [Methanocella arvoryzae MRE50]
gi|110619888|emb|CAJ35166.1| putative tRNA/rRNA cytosine-C5-methylase (Nop2/Sun family)
[Methanocella arvoryzae MRE50]
Length = 316
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 52/86 (60%)
Query: 239 LEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNK 298
L G ++Q+ S++ AL P G+ ++DM A+PGGKTT IA L+ +EG +VA+++ +
Sbjct: 97 LLGYFYVQDKSSMIPPLALAPNPGDTVIDMAASPGGKTTHIAQLMNNEGLIVAIEKEPGR 156
Query: 299 VMDIQKLAAEMGLKCITTYKLDALKA 324
+ ++ G+ Y +DAL+A
Sbjct: 157 IPSLRTNIGRCGVMNTAIYNMDALEA 182
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 6/71 (8%)
Query: 427 DRVLLDAPCSALGL----RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYST 482
D++LLDAPC+ G+ R R + EE ++ Q + D A+++++PGG +VYST
Sbjct: 190 DKILLDAPCTGEGVIARDRSRKTSREEA--DIQFCSTVQHELIDAALKVLKPGGTLVYST 247
Query: 483 CTINPGENEAL 493
C+ P ENE +
Sbjct: 248 CSYAPEENELI 258
>gi|390934274|ref|YP_006391779.1| RNA methylase [Thermoanaerobacterium saccharolyticum JW/SL-YS485]
gi|389569775|gb|AFK86180.1| RNA methylase, NOL1/NOP2/sun family [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
Length = 451
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 73/133 (54%), Gaps = 15/133 (11%)
Query: 365 AEGLNGDKSCKEKVSNEKGVERTYVSKADTRKNMRRM--RNGPGRNQCLGGRAENSKGFS 422
A LNG+ VSNE +R V +N+ RM RN N+ +N F
Sbjct: 120 ASKLNGEGLL---VSNEINSKRVKV----LAENIERMGIRNTVILNESPERLEKNFVDF- 171
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAA--EETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
FD++L+DAPCS G+ + AA E +++++ + Q+++ + A +++PGGI+VY
Sbjct: 172 ---FDKILVDAPCSGEGMFRKDEAAIDEWSLENVLSCSLRQKKILNSAANMLKPGGIMVY 228
Query: 481 STCTINPGENEAL 493
STCT +P ENE +
Sbjct: 229 STCTFSPEENEGV 241
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G ++Q ++ LDP G+ +LD+ AAPGGK+T IAS L EG +V+ + + +V
Sbjct: 81 GMYYIQEPSAMAVVEVLDPVPGDFVLDLSAAPGGKSTHIASKLNGEGLLVSNEINSKRVK 140
Query: 301 DIQKLAAEMGLK 312
+ + MG++
Sbjct: 141 VLAENIERMGIR 152
>gi|206901447|ref|YP_002251151.1| ribosomal RNA small subunit methyltransferase B [Dictyoglomus
thermophilum H-6-12]
gi|206740550|gb|ACI19608.1| ribosomal RNA small subunit methyltransferase B [Dictyoglomus
thermophilum H-6-12]
Length = 430
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 54/82 (65%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G +Q+ S++ A L+P+ G R++D+C+APG K+T +A L+ ++G++V+VD + N+V
Sbjct: 223 GYFVIQSEASMLPALILNPEPGSRVIDLCSAPGLKSTHLAELMNNKGKIVSVDINKNRVK 282
Query: 301 DIQKLAAEMGLKCITTYKLDAL 322
+++ A +G+ I T D L
Sbjct: 283 LVEENAKRLGISIIETLAEDVL 304
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 45/74 (60%), Gaps = 12/74 (16%)
Query: 425 SFDRVLLDAPCSALG-------LRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
+FDRVLLDAPCS LG ++ RL E I L + Q +M ++A +L++ GG
Sbjct: 313 TFDRVLLDAPCSGLGVISHKPEIKWRL--KREDIYKL---SEMQIKMLERAGKLLKKGGR 367
Query: 478 IVYSTCTINPGENE 491
+VYSTCTI ENE
Sbjct: 368 MVYSTCTITWHENE 381
>gi|113954299|ref|YP_729912.1| sun protein [Synechococcus sp. CC9311]
gi|113881650|gb|ABI46608.1| sun protein [Synechococcus sp. CC9311]
Length = 449
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 51/91 (56%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G +Q+ + A L P+ G+RILD CAAPGGK T +A L+ D GE+ AVDRS ++
Sbjct: 245 QGHWSVQDRSAQGVAPLLAPRPGDRILDACAAPGGKATHLAELMGDGGEIWAVDRSAGRL 304
Query: 300 MDIQKLAAEMGLKCITTYKLDALKAVRRKNE 330
+ AA +G I DA + ++ E
Sbjct: 305 KRVAANAARLGCGSIHALAADATNLLEQQPE 335
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 41/76 (53%), Gaps = 6/76 (7%)
Query: 419 KGFSPNSFDRVLLDAPCSALGLRPRLFAAEE--TIQSLRNHGKYQRRMFDQAVQLVRPGG 476
+GF F R+LLD PCS LG R A T ++ Q ++ + L+ PGG
Sbjct: 337 RGF----FQRILLDVPCSGLGTLSRHPDARWRVTPATVEELLPLQAQLLAAMLPLLAPGG 392
Query: 477 IIVYSTCTINPGENEA 492
+VY+TCTI+P EN A
Sbjct: 393 RLVYATCTIHPAENLA 408
>gi|291235462|ref|XP_002737664.1| PREDICTED: NOP2 protein-like [Saccoglossus kowalevskii]
Length = 628
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 44/73 (60%)
Query: 239 LEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNK 298
L G +Q S + AL PQ+ ERILDMCAAPGGKT+ IASL+++ G + A D + +
Sbjct: 365 LAGHYMMQGASSFLPVMALAPQENERILDMCAAPGGKTSYIASLMKNTGMLFANDANKER 424
Query: 299 VMDIQKLAAEMGL 311
V I MG+
Sbjct: 425 VKSIVGNIHRMGI 437
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 14/77 (18%)
Query: 425 SFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLV----------RP 474
+FDRVLLDAPC+ G + + + ++++ ++ QR + Q L+ +
Sbjct: 456 NFDRVLLDAPCTGTG----VISKDPSVKTNKDMLDVQRIVTIQKELLLSAIDSVDAKSKT 511
Query: 475 GGIIVYSTCTINPGENE 491
GG IVYSTC+I ENE
Sbjct: 512 GGYIVYSTCSILVDENE 528
>gi|419221581|ref|ZP_13764512.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC8E]
gi|378067476|gb|EHW29598.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC8E]
Length = 423
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 185 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 244
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 245 STCTLNQEENEAVC 258
Score = 45.1 bits (105), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 219 EGIAVDMHNR-IFQLPSFYDVLEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGK 275
EG ++ N L S + L G ++Q S++ AL D +R++D+ AAPG K
Sbjct: 72 EGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVMDVAAAPGSK 131
Query: 276 TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
TT IA+ + +EG ++A + S ++V + + G+ + D
Sbjct: 132 TTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFD 176
>gi|328874823|gb|EGG23188.1| NOL1/NOP2/Sun family protein [Dictyostelium fasciculatum]
Length = 713
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 50/84 (59%)
Query: 237 DVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296
+ L G Q+ S + AL+PQ GERILD+CA+PGGKTT +A+L+++ G +VA D +
Sbjct: 369 EYLAGHYIQQSASSFLPVVALEPQPGERILDLCASPGGKTTYVAALMKNTGTLVANDINE 428
Query: 297 NKVMDIQKLAAEMGLKCITTYKLD 320
++ + +G+K LD
Sbjct: 429 ERMRSLVANIHRLGVKNTIVSNLD 452
Score = 42.7 bits (99), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 14/79 (17%)
Query: 426 FDRVLLDAPCSALGLRPRLFAAEETIQSLRNHG------KYQRRMFDQAVQLVRP----G 475
FDR L+DAPC LG+ A ++ I+ ++ Q+ + A+ V G
Sbjct: 463 FDRCLVDAPCVGLGV----IAKDQQIKLSKSQRDVDLCVNMQKELILHAIDSVDAKSPTG 518
Query: 476 GIIVYSTCTINPGENEALC 494
GIIVYSTC++ ENE +
Sbjct: 519 GIIVYSTCSLTVEENEGVV 537
>gi|295397805|ref|ZP_06807870.1| ribosomal RNA small subunit methyltransferase B [Aerococcus
viridans ATCC 11563]
gi|294973940|gb|EFG49702.1| ribosomal RNA small subunit methyltransferase B [Aerococcus
viridans ATCC 11563]
Length = 482
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 420 GFSPNSFDRVLLDAPCSALGL--RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
G P SFD++L+DAPCS +GL R +T+Q L Q + +QA+ L++ GG+
Sbjct: 354 GSEPTSFDKILVDAPCSGVGLFRRKPDTKYHKTLQDLDALHDIQVTIMNQALPLLKKGGV 413
Query: 478 IVYSTCTINPGENE 491
I YSTCTI ENE
Sbjct: 414 ITYSTCTITREENE 427
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 54/98 (55%), Gaps = 1/98 (1%)
Query: 239 LEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNK 298
+ GEI +Q+ +++ AL+P+ GE +LD CAAPGGKT IA + G V+A D + NK
Sbjct: 260 MNGEITIQDESALLAVEALNPKPGETVLDACAAPGGKTVQIAEAVGRTGHVIACDIAENK 319
Query: 299 VMDIQKLAAEMGL-KCITTYKLDALKAVRRKNESNDEP 335
+ IQ+ M + + DA + R E+ EP
Sbjct: 320 LPLIQENVDRMQVADHVEILHQDATALLDRFGENGSEP 357
>gi|345004833|ref|YP_004807686.1| RNA methylase [halophilic archaeon DL31]
gi|344320459|gb|AEN05313.1| RNA methylase, NOL1/NOP2/sun family [halophilic archaeon DL31]
Length = 318
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 56/104 (53%), Gaps = 5/104 (4%)
Query: 223 VDMHNRIFQLP-----SFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTT 277
VD H+R+ +LP + + + G + Q S + A ALDP G+R+LD CAAPG KT
Sbjct: 55 VDWHDRLLKLPEGSPGTNWAYVHGWLHGQEEVSALPALALDPDPGDRVLDSCAAPGSKTC 114
Query: 278 AIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
+A L+ D G +V D + ++ ++ A +G+ + DA
Sbjct: 115 HLADLMDDTGVLVGNDNNLGRISALRHNAERLGVSNLVVTNRDA 158
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 424 NSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHG--KYQRRMFDQAVQLVRPGGIIVYS 481
+ FD V+ D PCS G + A ET G Q+ + +A+QL RPGG +VYS
Sbjct: 167 DEFDGVVADVPCSCEGTCRKNPDALETWTMNHVEGLVGVQKGILRRAIQLTRPGGEVVYS 226
Query: 482 TCTINPGENE 491
TCT P ENE
Sbjct: 227 TCTFAPEENE 236
>gi|134045502|ref|YP_001096988.1| ribosomal RNA methyltransferase NOP2 [Methanococcus maripaludis C5]
gi|132663127|gb|ABO34773.1| ribosomal RNA methyltransferase NOP2 [Methanococcus maripaludis C5]
Length = 277
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 54/83 (65%)
Query: 230 FQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEV 289
F + S + L G FLQ++ SI+ + L+P K + +LDMCAAPGGKTT +A L+ +EG +
Sbjct: 58 FSMGSTPEYLLGYYFLQSISSIIPSITLNPTKDDDLLDMCAAPGGKTTHLAQLMENEGSI 117
Query: 290 VAVDRSHNKVMDIQKLAAEMGLK 312
+AV+ + N++ ++ MG K
Sbjct: 118 LAVEINKNRLKSLRSNINRMGFK 140
Score = 41.6 bits (96), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 426 FDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTI 485
FD++LLDAPC+ G + +T + + K Q +F A+++++ GG +VYSTC+
Sbjct: 158 FDKILLDAPCT--GNEIKDCNRVKTKRDILFCAKRQVELFRTAIEVLKDGGELVYSTCSP 215
Query: 486 NPGENEAL 493
E+E +
Sbjct: 216 EIEEDEDI 223
>gi|342218721|ref|ZP_08711327.1| ribosomal RNA small subunit methyltransferase B [Megasphaera sp.
UPII 135-E]
gi|341589097|gb|EGS32463.1| ribosomal RNA small subunit methyltransferase B [Megasphaera sp.
UPII 135-E]
Length = 445
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 67/125 (53%), Gaps = 8/125 (6%)
Query: 202 IGQGTAMMSRAGI-FR----ASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHA 256
I +G ++ +AGI +R E I + I +P EG+ +Q+ S + AH
Sbjct: 191 IVEGMQILDQAGISYRKGKVVPECIYITTSQAIESIPLLR---EGKALIQDEASQLVAHI 247
Query: 257 LDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITT 316
+DPQ GE I+D CAAPGGKTT +A+L V D +K+ I++ A+ +GL I T
Sbjct: 248 VDPQPGEIIVDACAAPGGKTTHLATLGGKTAIVYGCDIYTHKLKLIEENASRLGLANIRT 307
Query: 317 YKLDA 321
+ DA
Sbjct: 308 IQQDA 312
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 45/69 (65%), Gaps = 6/69 (8%)
Query: 427 DRVLLDAPCSALG-LRPRL---FAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYST 482
DRVL+DAPCS LG LR +L + EE + R Q+++ + A V+ GG++VYST
Sbjct: 324 DRVLVDAPCSGLGILRHKLDLRWRKEE--KDTRILPALQKQILEGASVCVKDGGLLVYST 381
Query: 483 CTINPGENE 491
CT+NP EN+
Sbjct: 382 CTMNPAENQ 390
>gi|417608403|ref|ZP_12258909.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
STEC_DG131-3]
gi|422774265|ref|ZP_16827921.1| NOL1/NOP2/sun family protein [Escherichia coli H120]
gi|425422532|ref|ZP_18803712.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
0.1288]
gi|323948280|gb|EGB44268.1| NOL1/NOP2/sun family protein [Escherichia coli H120]
gi|345358993|gb|EGW91172.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
STEC_DG131-3]
gi|408344770|gb|EKJ59119.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
0.1288]
Length = 479
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 185 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 244
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 245 STCTLNQEENEAVC 258
Score = 45.4 bits (106), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 219 EGIAVDMHNR-IFQLPSFYDVLEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGK 275
EG ++ N L S + L G ++Q S++ AL D +R++D+ AAPG K
Sbjct: 72 EGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVMDVAAAPGSK 131
Query: 276 TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
TT IA+ + +EG ++A + S ++V + + G+ + D
Sbjct: 132 TTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFD 176
>gi|260868356|ref|YP_003234758.1| putative methyltransferase [Escherichia coli O111:H- str. 11128]
gi|257764712|dbj|BAI36207.1| predicted methyltransferase [Escherichia coli O111:H- str. 11128]
Length = 481
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 187 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 246
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 247 STCTLNQEENEAVC 260
Score = 45.1 bits (105), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 219 EGIAVDMHNR-IFQLPSFYDVLEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGK 275
EG ++ N L S + L G ++Q S++ AL D +R++D+ AAPG K
Sbjct: 74 EGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVMDVAAAPGSK 133
Query: 276 TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
TT IA+ + +EG ++A + S ++V + + G+ + D
Sbjct: 134 TTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFD 178
>gi|306832887|ref|ZP_07466020.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
bovis ATCC 700338]
gi|304424962|gb|EFM28095.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
bovis ATCC 700338]
Length = 440
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 45/73 (61%), Gaps = 4/73 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F+P+SFD++L+DAPCS +GL +P + +E Q + Q ++ D Q +R GGI
Sbjct: 316 FAPDSFDKILVDAPCSGIGLIRRKPDIKYNKEN-QDFSALQEIQLQILDSVCQTLRKGGI 374
Query: 478 IVYSTCTINPGEN 490
I YSTCTI EN
Sbjct: 375 ITYSTCTIFDEEN 387
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G I +Q+ S + A L+ Q E ILD CAAPGGKTT +AS L+ EG + A+D +K+
Sbjct: 229 GNITIQDESSQLVAPTLNIQGNEDILDACAAPGGKTTHMASYLK-EGHITALDLYDHKLT 287
Query: 301 DIQKLAAEMGL-KCITTYKLDA 321
+ A + + I+T K+DA
Sbjct: 288 LVMDNAKRLHVADKISTQKMDA 309
>gi|300709045|ref|XP_002996691.1| hypothetical protein NCER_100191 [Nosema ceranae BRL01]
gi|239606011|gb|EEQ83020.1| hypothetical protein NCER_100191 [Nosema ceranae BRL01]
Length = 362
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 50/83 (60%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
EG+I +QN+ S + A+ LDP RI+D CAAPG KT+ +++LL++ G+V A++ +
Sbjct: 153 EGKIVIQNIASCLPAYILDPLPNSRIIDACAAPGNKTSHLSNLLKNTGKVYAIEVDSKRF 212
Query: 300 MDIQKLAAEMGLKCITTYKLDAL 322
+ ++GLK + T D
Sbjct: 213 KILNYHVNKLGLKNVETINKDFF 235
>gi|433092243|ref|ZP_20278517.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE138]
gi|431610789|gb|ELI80073.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE138]
Length = 481
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 187 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 246
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 247 STCTLNQEENEAVC 260
Score = 45.1 bits (105), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 219 EGIAVDMHNR-IFQLPSFYDVLEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGK 275
EG ++ N L S + L G ++Q S++ AL D +R++D+ AAPG K
Sbjct: 74 EGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVMDVAAAPGSK 133
Query: 276 TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
TT IA+ + +EG ++A + S ++V + + G+ + D
Sbjct: 134 TTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFD 178
>gi|448525808|ref|XP_003869206.1| Nop2 protein [Candida orthopsilosis Co 90-125]
gi|380353559|emb|CCG23070.1| Nop2 protein [Candida orthopsilosis]
Length = 626
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 50/81 (61%), Gaps = 4/81 (4%)
Query: 237 DVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVD--- 293
+ L G+ LQ S + ALDPQ+ ERILDM AAPGGKTT I++L+++ G V A D
Sbjct: 333 EYLAGQYILQAASSFLPVIALDPQENERILDMAAAPGGKTTYISALMKNTGCVFANDANK 392
Query: 294 -RSHNKVMDIQKLAAEMGLKC 313
R+ + + +I +L + + C
Sbjct: 393 ARTKSLIANIHRLGCKNTIVC 413
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 14/79 (17%)
Query: 426 FDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKY------QRRMFDQAVQLV----RPG 475
FDR+LLDAPCS G+ A +E+++ R + Q+++ A+ V G
Sbjct: 427 FDRILLDAPCSGTGV----IAKDESVKVSRTEKDFMQIPHLQKQLLLSAIDSVDANSSTG 482
Query: 476 GIIVYSTCTINPGENEALC 494
G+IVYSTC++ ENEA+
Sbjct: 483 GVIVYSTCSVAVEENEAVV 501
>gi|226325128|ref|ZP_03800646.1| hypothetical protein COPCOM_02920 [Coprococcus comes ATCC 27758]
gi|225206476|gb|EEG88830.1| NOL1/NOP2/sun family protein [Coprococcus comes ATCC 27758]
Length = 473
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 56/101 (55%), Gaps = 18/101 (17%)
Query: 397 NMRRMRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRN 456
NM M PGR + + FS FD++L+DAPCS G+ ++ +++
Sbjct: 166 NMLVMSEEPGRLE---------RYFS-GYFDKILIDAPCSGEGM---FRKDKKMVRAWEE 212
Query: 457 HG-----KYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEA 492
HG K QR + QA ++++PGG+++YSTCT +P ENE
Sbjct: 213 HGPEFFSKLQRSIITQAARMLKPGGMMLYSTCTFDPLENEG 253
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 41/64 (64%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G +LQ ++ A+ L + G+R+LD+CAAPGGK T + + L++EG +VA D S ++
Sbjct: 94 GLYYLQEPSAMTPANRLPVEPGDRVLDVCAAPGGKATELGAKLQNEGVLVANDISSSRAR 153
Query: 301 DIQK 304
+ K
Sbjct: 154 GLLK 157
>gi|406986686|gb|EKE07221.1| hypothetical protein ACD_18C00151G0002 [uncultured bacterium]
Length = 294
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 3/72 (4%)
Query: 424 NSFDRVLLDAPCSA---LGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
N FD+VLLDAPCSA + L R + +++++H Q+++ A ++PGG +VY
Sbjct: 159 NYFDKVLLDAPCSAEARIDLADRRSYSYWNEKNIKDHAFLQKKLLFSAWTCLKPGGTLVY 218
Query: 481 STCTINPGENEA 492
STCT P ENE+
Sbjct: 219 STCTFAPEENES 230
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 49/73 (67%), Gaps = 3/73 (4%)
Query: 239 LEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNK 298
++G+I+LQ+L S+V LDP+ G+++LD+ +APG KT+ IA +++ GE++A +
Sbjct: 61 VDGKIYLQSLASMVPVIVLDPKVGDKVLDLTSAPGSKTSQIAMMMKKTGEIIANEIDQ-- 118
Query: 299 VMDIQKLAAEMGL 311
+ +KLA M L
Sbjct: 119 -IRFEKLAHNMKL 130
>gi|417121380|ref|ZP_11970808.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
97.0246]
gi|386148232|gb|EIG94669.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
97.0246]
Length = 479
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 185 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 244
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 245 STCTLNQEENEAVC 258
Score = 45.1 bits (105), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 219 EGIAVDMHNR-IFQLPSFYDVLEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGK 275
EG ++ N L S + L G ++Q S++ AL D +R++D+ AAPG K
Sbjct: 72 EGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVMDVAAAPGSK 131
Query: 276 TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
TT IA+ + +EG ++A + S ++V + + G+ + D
Sbjct: 132 TTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFD 176
>gi|325849117|ref|ZP_08170609.1| putative ribosomal RNA small subunit methyltransferase B
[Anaerococcus hydrogenalis ACS-025-V-Sch4]
gi|325480362|gb|EGC83425.1| putative ribosomal RNA small subunit methyltransferase B
[Anaerococcus hydrogenalis ACS-025-V-Sch4]
Length = 426
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 46/82 (56%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
EG +Q+ SI L+P+K +ILD+CAAPG KT+ +A L + +VA D S NK+
Sbjct: 224 EGLFTIQSEASIKVCEVLNPEKNSQILDLCAAPGTKTSFLAELCENSSRIVANDISFNKL 283
Query: 300 MDIQKLAAEMGLKCITTYKLDA 321
I + +GLK I DA
Sbjct: 284 SKINENIKRLGLKNIEITNFDA 305
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 426 FDRVLLDAPCSALGLRPRL--FAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTC 483
FD VL D PCS LG+ R T++ + N K Q+ + D+A ++ GGI+V+STC
Sbjct: 316 FDYVLCDLPCSGLGVMDRKPEIRYNRTMEDVINLSKLQKNILDRAFLYLKKGGIMVFSTC 375
Query: 484 TINPGENE 491
TI EN+
Sbjct: 376 TIGNIENK 383
>gi|301025409|ref|ZP_07188961.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
196-1]
gi|299880085|gb|EFI88296.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
196-1]
Length = 464
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 170 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 229
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 230 STCTLNQEENEAVC 243
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 219 EGIAVDMHNR-IFQLPSFYDVLEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGK 275
EG ++ N L S + L G ++Q S++ AL D +R++D+ AAPG K
Sbjct: 57 EGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSK 116
Query: 276 TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
TT I++ + +EG ++A + S ++V + + G+ + D
Sbjct: 117 TTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFD 161
>gi|209919201|ref|YP_002293285.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
SE11]
gi|300824225|ref|ZP_07104343.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
119-7]
gi|307314087|ref|ZP_07593699.1| RNA methylase, NOL1/NOP2/sun family [Escherichia coli W]
gi|331677714|ref|ZP_08378389.1| ribosomal RNA small subunit methyltransferase F
(rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA
m5C1407methyltransferase) [Escherichia coli H591]
gi|332279011|ref|ZP_08391424.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shigella sp. D9]
gi|378712724|ref|YP_005277617.1| RNA methylase [Escherichia coli KO11FL]
gi|386609221|ref|YP_006124707.1| putative methyltransferase [Escherichia coli W]
gi|386701196|ref|YP_006165033.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
KO11FL]
gi|386709694|ref|YP_006173415.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli W]
gi|419930537|ref|ZP_14448135.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
541-1]
gi|419950120|ref|ZP_14466340.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
CUMT8]
gi|422353982|ref|ZP_16434729.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
117-3]
gi|432376983|ref|ZP_19619980.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE12]
gi|432765189|ref|ZP_19999628.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE48]
gi|432831814|ref|ZP_20065388.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE135]
gi|432834825|ref|ZP_20068364.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE136]
gi|432967956|ref|ZP_20156871.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE203]
gi|209912460|dbj|BAG77534.1| conserved hypothetical protein [Escherichia coli SE11]
gi|300523296|gb|EFK44365.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
119-7]
gi|306906225|gb|EFN36742.1| RNA methylase, NOL1/NOP2/sun family [Escherichia coli W]
gi|315061138|gb|ADT75465.1| predicted methyltransferase [Escherichia coli W]
gi|323378285|gb|ADX50553.1| RNA methylase, NOL1/NOP2/sun family [Escherichia coli KO11FL]
gi|324018025|gb|EGB87244.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
117-3]
gi|331074174|gb|EGI45494.1| ribosomal RNA small subunit methyltransferase F
(rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA
m5C1407methyltransferase) [Escherichia coli H591]
gi|332101363|gb|EGJ04709.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shigella sp. D9]
gi|383392723|gb|AFH17681.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
KO11FL]
gi|383405386|gb|AFH11629.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli W]
gi|388399929|gb|EIL60703.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
541-1]
gi|388417435|gb|EIL77277.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
CUMT8]
gi|430899275|gb|ELC21380.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE12]
gi|431310950|gb|ELF99130.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE48]
gi|431375784|gb|ELG61107.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE135]
gi|431385185|gb|ELG69172.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE136]
gi|431471073|gb|ELH50966.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE203]
Length = 481
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 187 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 246
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 247 STCTLNQEENEAVC 260
Score = 45.1 bits (105), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 219 EGIAVDMHNR-IFQLPSFYDVLEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGK 275
EG ++ N L S + L G ++Q S++ AL D +R++D+ AAPG K
Sbjct: 74 EGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVMDVAAAPGSK 133
Query: 276 TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
TT IA+ + +EG ++A + S ++V + + G+ + D
Sbjct: 134 TTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFD 178
>gi|290968496|ref|ZP_06560035.1| ribosomal RNA small subunit methyltransferase B [Megasphaera
genomosp. type_1 str. 28L]
gi|290781492|gb|EFD94081.1| ribosomal RNA small subunit methyltransferase B [Megasphaera
genomosp. type_1 str. 28L]
Length = 442
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 85/185 (45%), Gaps = 21/185 (11%)
Query: 204 QGTAMMSRAGIFR-----ASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALD 258
+ AM++ GI A E + ++ ++ + L + G +Q+ S + AH LD
Sbjct: 193 KAMAMLAEKGIVTRPGRYAPESLYIETNDAVQNLEL---LAAGRAMIQDEASQLVAHVLD 249
Query: 259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYK 318
PQ G+ +LD+CAAPGGKTT IASL + V D +K+ I++ A ++ L I T
Sbjct: 250 PQPGDVVLDVCAAPGGKTTHIASLGGSDCLVYGADIYEHKLQLIRENAEKLHLTNIRTIL 309
Query: 319 LDALKAVRRKNESNDEP---------NMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLN 369
DA++ R D + K + + D M+L PS+ LN
Sbjct: 310 QDAVRIGERFPAKADRVLVDAPCSGLGILRRKLDLRWRKKEQDLMRL----PSLQTRILN 365
Query: 370 GDKSC 374
G +C
Sbjct: 366 GAAAC 370
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Query: 423 PNSFDRVLLDAPCSALG-LRPRL-FAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
P DRVL+DAPCS LG LR +L + Q L Q R+ + A V+PGGI+VY
Sbjct: 320 PAKADRVLVDAPCSGLGILRRKLDLRWRKKEQDLMRLPSLQTRILNGAAACVKPGGILVY 379
Query: 481 STCTINPGENEAL 493
STCTIN EN A+
Sbjct: 380 STCTINTAENAAV 392
>gi|432850818|ref|ZP_20081513.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE144]
gi|431400140|gb|ELG83522.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE144]
Length = 481
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 187 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 246
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 247 STCTLNQEENEAVC 260
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 239 LEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296
L G ++Q S++ AL D +R++D+ AAPG KTT IA+ + +EG ++A + S
Sbjct: 95 LSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGAILANEFSA 154
Query: 297 NKVMDIQKLAAEMGLKCITTYKLD 320
++V + + G+ + D
Sbjct: 155 SRVKVLHANISRCGISNVALTHFD 178
>gi|432485589|ref|ZP_19727505.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE212]
gi|432670914|ref|ZP_19906445.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE119]
gi|433173697|ref|ZP_20358231.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE232]
gi|431015986|gb|ELD29533.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE212]
gi|431210988|gb|ELF08971.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE119]
gi|431693587|gb|ELJ58999.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE232]
Length = 481
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 187 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 246
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 247 STCTLNQEENEAVC 260
Score = 42.4 bits (98), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 239 LEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296
L G ++Q S++ AL D ++++D+ AAPG KTT IA+ + +EG ++A + S
Sbjct: 95 LSGLFYIQEASSMLPVAALFADGNAPQQVMDVAAAPGSKTTQIAARMNNEGAILANEFSA 154
Query: 297 NKVMDIQKLAAEMGLKCITTYKLD 320
++V + + G+ + D
Sbjct: 155 SRVKVLHANISRCGISNVALTHFD 178
>gi|432369958|ref|ZP_19613047.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE10]
gi|430885585|gb|ELC08456.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE10]
Length = 481
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 187 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 246
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 247 STCTLNQEENEAVC 260
Score = 41.6 bits (96), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 239 LEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296
L G ++Q S++ AL D ++++D+ AAPG KTT IA+ + +EG ++A + S
Sbjct: 95 LSGLFYIQEASSMLPVAALFADGNAPKQVMDVAAAPGSKTTQIAARMNNEGAILANEFSA 154
Query: 297 NKVMDIQKLAAEMGLKCITTYKLD 320
++V + + G+ + D
Sbjct: 155 SRVKVLHANISRCGISNVALTHFD 178
>gi|422999907|ref|ZP_16990661.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 09-7901]
gi|354872878|gb|EHF33255.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 09-7901]
Length = 481
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 187 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 246
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 247 STCTLNQEENEAVC 260
Score = 45.1 bits (105), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 219 EGIAVDMHNR-IFQLPSFYDVLEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGK 275
EG ++ N L S + L G ++Q S++ AL D +R++D+ AAPG K
Sbjct: 74 EGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVMDVAAAPGSK 133
Query: 276 TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
TT IA+ + +EG ++A + S ++V + + G+ + D
Sbjct: 134 TTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFD 178
>gi|331683339|ref|ZP_08383940.1| ribosomal RNA small subunit methyltransferase F
(rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA
m5C1407methyltransferase) [Escherichia coli H299]
gi|331079554|gb|EGI50751.1| ribosomal RNA small subunit methyltransferase F
(rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA
m5C1407methyltransferase) [Escherichia coli H299]
Length = 479
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 185 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 244
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 245 STCTLNQEENEAVC 258
Score = 45.1 bits (105), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 219 EGIAVDMHNR-IFQLPSFYDVLEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGK 275
EG ++ N L S + L G ++Q S++ AL D +R++D+ AAPG K
Sbjct: 72 EGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSK 131
Query: 276 TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
TT IA+ + +EG ++A + S ++V + + G+ + D
Sbjct: 132 TTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFD 176
>gi|301026587|ref|ZP_07190010.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
69-1]
gi|419916440|ref|ZP_14434747.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli KD2]
gi|300395420|gb|EFJ78958.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
69-1]
gi|388395891|gb|EIL57026.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli KD2]
Length = 481
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 187 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 246
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 247 STCTLNQEENEAVC 260
Score = 45.1 bits (105), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 219 EGIAVDMHNR-IFQLPSFYDVLEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGK 275
EG ++ N L S + L G ++Q S++ AL D +R++D+ AAPG K
Sbjct: 74 EGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSK 133
Query: 276 TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
TT IA+ + +EG ++A + S ++V + + G+ + D
Sbjct: 134 TTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFD 178
>gi|427804967|ref|ZP_18972034.1| putative nucleolar proteins [Escherichia coli chi7122]
gi|427809523|ref|ZP_18976588.1| putative nucleolar proteins [Escherichia coli]
gi|432481174|ref|ZP_19723132.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE210]
gi|432674872|ref|ZP_19910345.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE142]
gi|412963149|emb|CCK47067.1| putative nucleolar proteins [Escherichia coli chi7122]
gi|412969702|emb|CCJ44340.1| putative nucleolar proteins [Escherichia coli]
gi|431007831|gb|ELD22642.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE210]
gi|431215373|gb|ELF13069.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE142]
Length = 481
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 187 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 246
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 247 STCTLNQEENEAVC 260
Score = 45.4 bits (106), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 219 EGIAVDMHNR-IFQLPSFYDVLEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGK 275
EG ++ N L S + L G ++Q S++ AL D +R++D+ AAPG K
Sbjct: 74 EGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVMDVAAAPGSK 133
Query: 276 TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
TT IA+ + +EG ++A + S ++V + + G+ + D
Sbjct: 134 TTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFD 178
>gi|330834473|ref|YP_004409201.1| Fmu (Sun) domain-containing protein [Metallosphaera cuprina Ar-4]
gi|329566612|gb|AEB94717.1| Fmu (Sun) domain-containing protein [Metallosphaera cuprina Ar-4]
Length = 345
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 45/69 (65%), Gaps = 1/69 (1%)
Query: 427 DRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTIN 486
D+V++D PCSALG+RP+L+ ++ + N YQ++ + A +++ GG +VYSTCT
Sbjct: 248 DKVIIDPPCSALGVRPKLYDKKDK-NDILNFSSYQKQFINSAWAILKRGGTLVYSTCTTT 306
Query: 487 PGENEALCA 495
ENE + +
Sbjct: 307 LQENEEVIS 315
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 77/194 (39%), Gaps = 59/194 (30%)
Query: 125 EVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDG-----GWGLGI 179
+V+V ++ AE+ + GA VY PG+ KG V+V +G W + +
Sbjct: 82 KVVVDKRTAESAMLGANVYKPGIKRIEG---KGSKVSVLSDSGHHVANGFLKRDDWTVQV 138
Query: 180 TRGTVL--QGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYD 237
T + + S+ D +SGL I QG A
Sbjct: 139 TESIYVSPKISELDVI---KSGLAISQGKA------------------------------ 165
Query: 238 VLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHN 297
S+ A +DP+ GERI+DM A PGGK T I L + +V D S
Sbjct: 166 ------------SMYVARIVDPKPGERIVDMNAFPGGKLTHIYQ-LEPKVNLVGFDHSQK 212
Query: 298 KVMDIQKLAAEMGL 311
K I+KL +++ L
Sbjct: 213 K---IEKLRSKLEL 223
>gi|415817991|ref|ZP_11507907.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
OK1180]
gi|417195325|ref|ZP_12015739.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
4.0522]
gi|417591973|ref|ZP_12242672.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
2534-86]
gi|419197220|ref|ZP_13740613.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC8A]
gi|419887834|ref|ZP_14408386.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O111:H8 str. CVM9570]
gi|419897168|ref|ZP_14416761.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O111:H8 str. CVM9574]
gi|420091432|ref|ZP_14603179.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O111:H8 str. CVM9602]
gi|420093785|ref|ZP_14605420.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O111:H8 str. CVM9634]
gi|424770347|ref|ZP_18197552.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O111:H8 str. CFSAN001632]
gi|323180615|gb|EFZ66160.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
OK1180]
gi|345340633|gb|EGW73051.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
2534-86]
gi|378048532|gb|EHW10886.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC8A]
gi|386189367|gb|EIH78133.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
4.0522]
gi|388355746|gb|EIL20568.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O111:H8 str. CVM9574]
gi|388361751|gb|EIL25828.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O111:H8 str. CVM9570]
gi|394383017|gb|EJE60625.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O111:H8 str. CVM9602]
gi|394398298|gb|EJE74485.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O111:H8 str. CVM9634]
gi|421942545|gb|EKT99872.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O111:H8 str. CFSAN001632]
Length = 479
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 185 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 244
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 245 STCTLNQEENEAVC 258
Score = 45.1 bits (105), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 219 EGIAVDMHNR-IFQLPSFYDVLEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGK 275
EG ++ N L S + L G ++Q S++ AL D +R++D+ AAPG K
Sbjct: 72 EGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVMDVAAAPGSK 131
Query: 276 TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
TT IA+ + +EG ++A + S ++V + + G+ + D
Sbjct: 132 TTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFD 176
>gi|309794215|ref|ZP_07688639.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
145-7]
gi|308122120|gb|EFO59382.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
145-7]
Length = 481
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 187 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 246
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 247 STCTLNQEENEAVC 260
Score = 45.1 bits (105), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 219 EGIAVDMHNR-IFQLPSFYDVLEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGK 275
EG ++ N L S + L G ++Q S++ AL D +R++D+ AAPG K
Sbjct: 74 EGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVMDVAAAPGSK 133
Query: 276 TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
TT IA+ + +EG ++A + S ++V + + G+ + D
Sbjct: 134 TTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFD 178
>gi|304437063|ref|ZP_07397026.1| ribosomal RNA small subunit methyltransferase B [Selenomonas sp.
oral taxon 149 str. 67H29BP]
gi|304370014|gb|EFM23676.1| ribosomal RNA small subunit methyltransferase B [Selenomonas sp.
oral taxon 149 str. 67H29BP]
Length = 449
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 64/124 (51%), Gaps = 11/124 (8%)
Query: 206 TAMMSR---AGI-----FRASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHAL 257
TA+M R AG+ R EGI + H L + + EG +Q+ S++ A+ L
Sbjct: 199 TALMERLTAAGVRADASLRVPEGILLRTHG---ALDALAPLREGLAQVQDESSMLVAYIL 255
Query: 258 DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTY 317
+ G ++D CAAPGGKTT IA + + G ++A D K+ I + A +G+ I T
Sbjct: 256 GAEPGMTVIDACAAPGGKTTHIAQRMENRGRILAFDIYEEKLGRIMRNAERLGISIIETQ 315
Query: 318 KLDA 321
LDA
Sbjct: 316 LLDA 319
Score = 46.6 bits (109), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 427 DRVLLDAPCSALGLRPRLFAAE--ETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCT 484
DRVL+DAPCS LG+ R A ++ + Q + A + V+ GG++VYSTCT
Sbjct: 331 DRVLVDAPCSGLGVLRRKPDARWRKSPSDAKTLPPLQLAILASAARTVKQGGVLVYSTCT 390
Query: 485 INPGENEAL 493
+ EN A+
Sbjct: 391 MERSENAAV 399
>gi|260855695|ref|YP_003229586.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O26:H11 str. 11368]
gi|300904700|ref|ZP_07122533.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
84-1]
gi|301304407|ref|ZP_07210519.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
124-1]
gi|415861250|ref|ZP_11534916.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
85-1]
gi|433130361|ref|ZP_20315806.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE163]
gi|433135063|ref|ZP_20320417.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE166]
gi|257754344|dbj|BAI25846.1| predicted methyltransferase [Escherichia coli O26:H11 str. 11368]
gi|300403367|gb|EFJ86905.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
84-1]
gi|300840258|gb|EFK68018.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
124-1]
gi|315257353|gb|EFU37321.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
85-1]
gi|431647409|gb|ELJ14893.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE163]
gi|431657926|gb|ELJ24888.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE166]
Length = 481
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 187 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 246
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 247 STCTLNQEENEAVC 260
Score = 45.4 bits (106), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 219 EGIAVDMHNR-IFQLPSFYDVLEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGK 275
EG ++ N L S + L G ++Q S++ AL D +R++D+ AAPG K
Sbjct: 74 EGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVMDVAAAPGSK 133
Query: 276 TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
TT IA+ + +EG ++A + S ++V + + G+ + D
Sbjct: 134 TTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFD 178
>gi|188494314|ref|ZP_03001584.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
53638]
gi|188489513|gb|EDU64616.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
53638]
Length = 481
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 187 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 246
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 247 STCTLNQEENEAVC 260
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 239 LEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296
L G ++Q S++ AL D +R++D+ AAPG KTT IA+ + +EG ++A + S
Sbjct: 95 LSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGAILANEFSA 154
Query: 297 NKVMDIQKLAAEMGLKCITTYKLD 320
++V + + G+ + D
Sbjct: 155 SRVKVLHANISRCGISNVALTHFD 178
>gi|448400491|ref|ZP_21571411.1| RNA methylase, NOL1/NOP2/sun family protein [Haloterrigena limicola
JCM 13563]
gi|445667211|gb|ELZ19856.1| RNA methylase, NOL1/NOP2/sun family protein [Haloterrigena limicola
JCM 13563]
Length = 303
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Query: 234 SFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVD 293
SF+ G+ + +P++V LDPQ GER+ D CAAPGGK T +A+L+ D G VVA D
Sbjct: 75 SFHGFTHGQEEVSAVPAVV----LDPQPGERVWDSCAAPGGKATQLAALMDDRGTVVAND 130
Query: 294 RSHNKVMDIQKLAAEMGLKCITTYKLDA 321
+ ++ ++ A +G + DA
Sbjct: 131 NNLGRISALRFNAERLGATSLAVTNADA 158
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 421 FSPNSFDRVLLDAPCSALG-LRPRLFAAEETIQS-LRNHGKYQRRMFDQAVQLVRPGGII 478
F ++FDR L+DAPCS G +R A + + + + Q+ + +A+Q R GG +
Sbjct: 166 FDFDAFDRTLVDAPCSCEGTIRKNPDALDNWSEGHISSVAGIQKGIIRRAIQATREGGTV 225
Query: 479 VYSTCTINPGENEAL 493
VYSTCT P ENEA+
Sbjct: 226 VYSTCTFAPEENEAV 240
>gi|380795877|gb|AFE69814.1| putative methyltransferase NSUN5 isoform 1, partial [Macaca
mulatta]
Length = 451
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 70/139 (50%), Gaps = 14/139 (10%)
Query: 194 YFERSGL-YIGQGTAMMSRAGIFRASEG---IAVDMHNRIFQLPSFYDVLE------GEI 243
YF+R G Y G+ +++ RA +G + + + P+ D+ E G +
Sbjct: 138 YFKRQGFSYQGRASSLDD----LRALKGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHL 193
Query: 244 FLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQ 303
LQ+ S + A L+P G ++D CAAPG KT+ +A+LL+++G++ A D ++ +
Sbjct: 194 ILQDRASCLPAMLLNPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMA 253
Query: 304 KLAAEMGLKCITTYKLDAL 322
L A G+ C + D L
Sbjct: 254 TLLARAGISCCELAEEDFL 272
>gi|417213137|ref|ZP_12022499.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
JB1-95]
gi|419203416|ref|ZP_13746615.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC8B]
gi|378051398|gb|EHW13715.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC8B]
gi|386194525|gb|EIH88776.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
JB1-95]
Length = 479
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 185 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 244
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 245 STCTLNQEENEAVC 258
Score = 45.1 bits (105), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 219 EGIAVDMHNR-IFQLPSFYDVLEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGK 275
EG ++ N L S + L G ++Q S++ AL D +R++D+ AAPG K
Sbjct: 72 EGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVMDVAAAPGSK 131
Query: 276 TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
TT IA+ + +EG ++A + S ++V + + G+ + D
Sbjct: 132 TTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFD 176
>gi|325294320|ref|YP_004280834.1| sun protein [Desulfurobacterium thermolithotrophum DSM 11699]
gi|325064768|gb|ADY72775.1| sun protein [Desulfurobacterium thermolithotrophum DSM 11699]
Length = 442
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 50/72 (69%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
EG ++Q+ S ++A+ LDP++GE ILD+ AAPGGKTTA++SL D+ ++AVD + ++
Sbjct: 229 EGFFYIQDPASFLSAYLLDPKQGEIILDVGAAPGGKTTALSSLTIDKARIIAVDINKERM 288
Query: 300 MDIQKLAAEMGL 311
++ +G+
Sbjct: 289 KLLKNNLKRLGI 300
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
Query: 424 NSFDRVLLDAPCSALGLRPRLFAAE--ETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYS 481
NSFD++L+DAPCSA G+ R + ++++ ++ + QR + +L++PGG+++YS
Sbjct: 322 NSFDKILIDAPCSATGVIRRHPEGKWNKSLKLIKYNQTIQRNLLSSCYKLLKPGGVLLYS 381
Query: 482 TCTINPGENEALC 494
C++ E E +
Sbjct: 382 VCSLEKEEGEDIL 394
>gi|260437316|ref|ZP_05791132.1| ribosomal RNA small subunit methyltransferase B [Butyrivibrio
crossotus DSM 2876]
gi|292810228|gb|EFF69433.1| ribosomal RNA small subunit methyltransferase B [Butyrivibrio
crossotus DSM 2876]
Length = 443
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 49/81 (60%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G+ F+Q+L S++ +A++P+K ++D+CAAPGGK+ IA + + G V A D S NKVM
Sbjct: 230 GDFFVQDLSSMMVCYAINPEKDSYVIDLCAAPGGKSLHIAEFMDNTGFVEARDVSDNKVM 289
Query: 301 DIQKLAAEMGLKCITTYKLDA 321
I + + L I DA
Sbjct: 290 MINENIDRLNLCNIKAVVKDA 310
Score = 45.1 bits (105), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 8/69 (11%)
Query: 427 DRVLLDAPCSALGL---RP--RLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYS 481
D V+ D PCS LG+ +P + A+EE L + Q+++ D + + V+ GG +S
Sbjct: 322 DVVIADLPCSGLGILNKKPDIKYHASEEKCHEL---SELQKKILDNSKEYVKHGGKFCFS 378
Query: 482 TCTINPGEN 490
TCT+N EN
Sbjct: 379 TCTLNYEEN 387
>gi|218554409|ref|YP_002387322.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
IAI1]
gi|293446207|ref|ZP_06662629.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
B088]
gi|331668527|ref|ZP_08369375.1| ribosomal RNA small subunit methyltransferase F
(rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA
m5C1407methyltransferase) [Escherichia coli TA271]
gi|417168095|ref|ZP_12000717.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
99.0741]
gi|417265971|ref|ZP_12053340.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
3.3884]
gi|418044028|ref|ZP_12682177.1| RNA methylase, NOL1/NOP2/sun family [Escherichia coli W26]
gi|418941099|ref|ZP_13494438.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O157:H43 str. T22]
gi|419805996|ref|ZP_14331116.1| RNA methylase, NOL1/NOP2/sun family [Escherichia coli AI27]
gi|422761081|ref|ZP_16814840.1| NOL1/NOP2/sun family protein [Escherichia coli E1167]
gi|226725336|sp|B7M2B1.1|RSMF_ECO8A RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|257096806|sp|B6IBR3.2|RSMF_ECOSE RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|218361177|emb|CAQ98760.1| putative RNA AdoMet-dependent methyltransferase [Escherichia coli
IAI1]
gi|291323037|gb|EFE62465.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
B088]
gi|324118895|gb|EGC12784.1| NOL1/NOP2/sun family protein [Escherichia coli E1167]
gi|331063721|gb|EGI35632.1| ribosomal RNA small subunit methyltransferase F
(rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA
m5C1407methyltransferase) [Escherichia coli TA271]
gi|375323589|gb|EHS69295.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O157:H43 str. T22]
gi|383472979|gb|EID65009.1| RNA methylase, NOL1/NOP2/sun family [Escherichia coli W26]
gi|384470967|gb|EIE55058.1| RNA methylase, NOL1/NOP2/sun family [Escherichia coli AI27]
gi|386171121|gb|EIH43169.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
99.0741]
gi|386231964|gb|EII59311.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
3.3884]
Length = 479
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 185 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 244
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 245 STCTLNQEENEAVC 258
Score = 45.1 bits (105), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 219 EGIAVDMHNR-IFQLPSFYDVLEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGK 275
EG ++ N L S + L G ++Q S++ AL D +R++D+ AAPG K
Sbjct: 72 EGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVMDVAAAPGSK 131
Query: 276 TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
TT IA+ + +EG ++A + S ++V + + G+ + D
Sbjct: 132 TTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFD 176
>gi|194434523|ref|ZP_03066782.1| ribosomal RNA small subunit methyltransferase F [Shigella
dysenteriae 1012]
gi|417672336|ref|ZP_12321807.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella
dysenteriae 155-74]
gi|420347080|ref|ZP_14848486.1| ribosomal RNA small subunit methyltransferase F [Shigella boydii
965-58]
gi|194417235|gb|EDX33345.1| ribosomal RNA small subunit methyltransferase F [Shigella
dysenteriae 1012]
gi|332093311|gb|EGI98370.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella
dysenteriae 155-74]
gi|391272172|gb|EIQ31029.1| ribosomal RNA small subunit methyltransferase F [Shigella boydii
965-58]
Length = 479
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 185 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 244
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 245 STCTLNQEENEAVC 258
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 239 LEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296
L G ++Q S++ AL D +R++D+ AAPG KTT IA+ + +EG ++A + S
Sbjct: 93 LSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGAILANEFSA 152
Query: 297 NKVMDIQKLAAEMGLKCITTYKLD 320
++V + + G+ + D
Sbjct: 153 SRVKVLHANISRCGISNVALTHFD 176
>gi|90111341|ref|NP_416349.2| 16S rRNA m(5)C1407 methyltransferase, SAM-dependent [Escherichia
coli str. K-12 substr. MG1655]
gi|170081491|ref|YP_001730811.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli str.
K-12 substr. DH10B]
gi|238901050|ref|YP_002926846.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
BW2952]
gi|388477909|ref|YP_490097.1| methyltransferase [Escherichia coli str. K-12 substr. W3110]
gi|417262064|ref|ZP_12049552.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
2.3916]
gi|417272767|ref|ZP_12060116.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
2.4168]
gi|417277041|ref|ZP_12064367.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
3.2303]
gi|417291484|ref|ZP_12078765.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli B41]
gi|417613256|ref|ZP_12263717.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
STEC_EH250]
gi|417618394|ref|ZP_12268814.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
G58-1]
gi|417634751|ref|ZP_12284965.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
STEC_S1191]
gi|417943508|ref|ZP_12586756.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
XH140A]
gi|417974931|ref|ZP_12615732.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
XH001]
gi|418303104|ref|ZP_12914898.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
UMNF18]
gi|418957798|ref|ZP_13509721.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli J53]
gi|419154026|ref|ZP_13698594.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC6C]
gi|419159335|ref|ZP_13703844.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC6D]
gi|419164556|ref|ZP_13709013.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC6E]
gi|419808928|ref|ZP_14333814.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O32:H37 str. P4]
gi|422772290|ref|ZP_16825978.1| NOL1/NOP2/sun family protein [Escherichia coli E482]
gi|425115218|ref|ZP_18517026.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
8.0566]
gi|425119937|ref|ZP_18521643.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
8.0569]
gi|425272947|ref|ZP_18664380.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
TW15901]
gi|425283429|ref|ZP_18674489.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
TW00353]
gi|442590260|ref|ZP_21009042.1| Ribosomal RNA small subunit methyltransferase F [Escherichia coli
O10:K5(L):H4 str. ATCC 23506]
gi|450244492|ref|ZP_21900343.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli S17]
gi|3915994|sp|P76273.2|RSMF_ECOLI RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|226725337|sp|B1XHA3.1|RSMF_ECODH RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|259495488|sp|C4ZZJ2.1|RSMF_ECOBW RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|85675140|dbj|BAA15648.2| predicted methyltransferase [Escherichia coli str. K12 substr.
W3110]
gi|87081985|gb|AAC74905.2| 16S rRNA m(5)C1407 methyltransferase, SAM-dependent [Escherichia
coli str. K-12 substr. MG1655]
gi|169889326|gb|ACB03033.1| predicted methyltransferase [Escherichia coli str. K-12 substr.
DH10B]
gi|238862668|gb|ACR64666.1| predicted methyltransferase [Escherichia coli BW2952]
gi|323940499|gb|EGB36690.1| NOL1/NOP2/sun family protein [Escherichia coli E482]
gi|339415202|gb|AEJ56874.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
UMNF18]
gi|342364834|gb|EGU28933.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
XH140A]
gi|344195540|gb|EGV49609.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
XH001]
gi|345362767|gb|EGW94912.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
STEC_EH250]
gi|345376767|gb|EGX08700.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
G58-1]
gi|345388242|gb|EGX18053.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
STEC_S1191]
gi|359332313|dbj|BAL38760.1| predicted methyltransferase [Escherichia coli str. K-12 substr.
MDS42]
gi|377998393|gb|EHV61485.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC6C]
gi|378009379|gb|EHV72335.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC6D]
gi|378010638|gb|EHV73583.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC6E]
gi|384379407|gb|EIE37275.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli J53]
gi|385157858|gb|EIF19848.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O32:H37 str. P4]
gi|386225191|gb|EII47526.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
2.3916]
gi|386236467|gb|EII68443.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
2.4168]
gi|386240530|gb|EII77454.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
3.2303]
gi|386253806|gb|EIJ03496.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli B41]
gi|408194206|gb|EKI19694.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
TW15901]
gi|408202717|gb|EKI27779.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
TW00353]
gi|408569636|gb|EKK45623.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
8.0566]
gi|408570878|gb|EKK46834.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
8.0569]
gi|441609541|emb|CCP94955.1| Ribosomal RNA small subunit methyltransferase F [Escherichia coli
O10:K5(L):H4 str. ATCC 23506]
gi|449321177|gb|EMD11192.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli S17]
Length = 479
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 185 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 244
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 245 STCTLNQEENEAVC 258
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 219 EGIAVDMHNR-IFQLPSFYDVLEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGK 275
EG ++ N L S + L G ++Q S++ AL D +R++D+ AAPG K
Sbjct: 72 EGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSK 131
Query: 276 TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
TT I++ + +EG ++A + S ++V + + G+ + D
Sbjct: 132 TTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFD 176
>gi|432543346|ref|ZP_19780195.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE236]
gi|432548836|ref|ZP_19785610.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE237]
gi|432622033|ref|ZP_19858067.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE76]
gi|432815529|ref|ZP_20049314.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE115]
gi|431074945|gb|ELD82482.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE236]
gi|431080656|gb|ELD87451.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE237]
gi|431159732|gb|ELE60276.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE76]
gi|431364585|gb|ELG51116.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE115]
Length = 481
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 187 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 246
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 247 STCTLNQEENEAVC 260
Score = 45.1 bits (105), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 239 LEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296
L G ++Q S++ AL D +R++D+ AAPG KTT IA+ + +EG ++A + S
Sbjct: 95 LSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGAILANEFSA 154
Query: 297 NKVMDIQKLAAEMGLKCITTYKLD 320
++V + + G++ + D
Sbjct: 155 SRVKVLHANISRCGIRNVALTHFD 178
>gi|82543759|ref|YP_407706.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shigella boydii
Sb227]
gi|81245170|gb|ABB65878.1| putative nucleolar proteins [Shigella boydii Sb227]
Length = 481
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 187 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 246
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 247 STCTLNQEENEAVC 260
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 219 EGIAVDMHNR-IFQLPSFYDVLEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGK 275
EG ++ N L S + L G ++Q S++ AL D +R++D+ AAPG K
Sbjct: 74 EGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSK 133
Query: 276 TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
TT IA+ + +EG ++A + S ++V + + G+ + D
Sbjct: 134 TTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFD 178
>gi|386704436|ref|YP_006168283.1| tRNA and rRNA cytosine-C5-methylase [Escherichia coli P12b]
gi|383102604|gb|AFG40113.1| tRNA and rRNA cytosine-C5-methylase [Escherichia coli P12b]
Length = 481
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 187 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 246
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 247 STCTLNQEENEAVC 260
Score = 45.1 bits (105), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 219 EGIAVDMHNR-IFQLPSFYDVLEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGK 275
EG ++ N L S + L G ++Q S++ AL D +R++D+ AAPG K
Sbjct: 74 EGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVMDVAAAPGSK 133
Query: 276 TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
TT IA+ + +EG ++A + S ++V + + G+ + D
Sbjct: 134 TTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFD 178
>gi|419391752|ref|ZP_13932567.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC15A]
gi|419396821|ref|ZP_13937591.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC15B]
gi|419402156|ref|ZP_13942881.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC15C]
gi|419407299|ref|ZP_13947990.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC15D]
gi|419412835|ref|ZP_13953491.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC15E]
gi|378238476|gb|EHX98477.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC15A]
gi|378245172|gb|EHY05110.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC15B]
gi|378248015|gb|EHY07930.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC15C]
gi|378255549|gb|EHY15407.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC15D]
gi|378259700|gb|EHY19512.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC15E]
Length = 479
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 185 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 244
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 245 STCTLNQEENEAVC 258
Score = 45.4 bits (106), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 219 EGIAVDMHNR-IFQLPSFYDVLEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGK 275
EG ++ N L S + L G ++Q S++ AL D +R++D+ AAPG K
Sbjct: 72 EGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVMDVAAAPGSK 131
Query: 276 TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
TT IA+ + +EG ++A + S ++V + + G+ + D
Sbjct: 132 TTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFD 176
>gi|419261256|ref|ZP_13803684.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC10B]
gi|378108587|gb|EHW70200.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC10B]
Length = 479
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 185 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 244
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 245 STCTLNQEENEAVC 258
Score = 45.1 bits (105), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 219 EGIAVDMHNR-IFQLPSFYDVLEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGK 275
EG ++ N L S + L G ++Q S++ AL D +R++D+ AAPG K
Sbjct: 72 EGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVMDVAAAPGSK 131
Query: 276 TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
TT IA+ + +EG ++A + S ++V + + G+ + D
Sbjct: 132 TTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFD 176
>gi|257877736|ref|ZP_05657389.1| sun protein [Enterococcus casseliflavus EC20]
gi|257811902|gb|EEV40722.1| sun protein [Enterococcus casseliflavus EC20]
Length = 452
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Query: 416 ENSKGFSPNSFDRVLLDAPCSALGLRPRL--FAAEETIQSLRNHGKYQRRMFDQAVQLVR 473
E ++ F+P FDR+L+DAPCS LGL R +T + + QR + + A ++
Sbjct: 322 ETAQTFAPEQFDRILVDAPCSGLGLMRRKPDIKYSKTEADFQRLPQIQREILESAAPTLK 381
Query: 474 PGGIIVYSTCTINPGENEALCA 495
GI+VYSTCTI EN+ + A
Sbjct: 382 KSGIMVYSTCTILAEENQQVVA 403
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLR--DEGEVVAVDRSHN 297
EG + +Q+ S++ A L + ++LD CAAPGGKTT IA+ L + G+V A+D +
Sbjct: 236 EGLLTIQDESSMLVAPVLQVARDHQVLDACAAPGGKTTHIAAFLSAAEGGKVTALDIHAH 295
Query: 298 KVMDIQKLAAEMGLKCIT-TYKLDA 321
KV IQ+ A +G++ + T +DA
Sbjct: 296 KVKLIQQNAQRLGVEAVVETRVMDA 320
>gi|187732363|ref|YP_001880634.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shigella boydii CDC
3083-94]
gi|187429355|gb|ACD08629.1| ribosomal RNA small subunit methyltransferase F [Shigella boydii
CDC 3083-94]
Length = 481
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 187 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 246
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 247 STCTLNQEENEAVC 260
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 219 EGIAVDMHNR-IFQLPSFYDVLEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGK 275
EG ++ N L S + L G ++Q S++ AL D +R++D+ AAPG K
Sbjct: 74 EGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSK 133
Query: 276 TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
TT IA+ + +EG ++A + S ++V + + G+ + D
Sbjct: 134 TTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFD 178
>gi|410859672|ref|YP_006974906.1| 16S rRNA methyltransferase B [Alteromonas macleodii AltDE1]
gi|410816934|gb|AFV83551.1| 16S rRNA methyltransferase B [Alteromonas macleodii AltDE1]
Length = 439
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 55/103 (53%), Gaps = 12/103 (11%)
Query: 396 KNMRRMRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLR 455
+NM R+++ Q G A + FDR+LLDAPCSA G+ R I+ LR
Sbjct: 293 ENMTRLQHKVDIRQ--GDAANPESWWDGKPFDRILLDAPCSATGVIRR----HPDIRWLR 346
Query: 456 ------NHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEA 492
N + QRR+ D L++PGG ++Y+TC+I P EN A
Sbjct: 347 KANDIDNLAQLQRRILDTLWGLLKPGGTLLYATCSILPKENMA 389
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 219 EGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTA 278
+ I + I LP F +G +Q+ + + AH L PQ ERILD CAAPGGKT
Sbjct: 211 DAIVLSQREDITGLPGFE---KGHFAVQDGAAQLAAHYLQPQANERILDCCAAPGGKTGH 267
Query: 279 IASLLRDEGEVVAVDRSHNKVMDIQK 304
I D V+A+D ++ +++
Sbjct: 268 IVECAPDTEYVLALDADATRLKRVEE 293
>gi|419865517|ref|ZP_14387899.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O103:H25 str. CVM9340]
gi|388337283|gb|EIL03785.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O103:H25 str. CVM9340]
Length = 479
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 185 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 244
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 245 STCTLNQEENEAVC 258
Score = 45.4 bits (106), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 219 EGIAVDMHNR-IFQLPSFYDVLEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGK 275
EG ++ N L S + L G ++Q S++ AL D +R++D+ AAPG K
Sbjct: 72 EGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVMDVAAAPGSK 131
Query: 276 TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
TT IA+ + +EG ++A + S ++V + + G+ + D
Sbjct: 132 TTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFD 176
>gi|416305293|ref|ZP_11654253.1| Ribosomal RNA small subunit methyltransferase F [Shigella flexneri
CDC 796-83]
gi|420325197|ref|ZP_14826965.1| ribosomal RNA small subunit methyltransferase F [Shigella flexneri
CCH060]
gi|421682206|ref|ZP_16122020.1| ribosomal RNA small subunit methyltransferase F [Shigella flexneri
1485-80]
gi|320183016|gb|EFW57882.1| Ribosomal RNA small subunit methyltransferase F [Shigella flexneri
CDC 796-83]
gi|391253632|gb|EIQ12803.1| ribosomal RNA small subunit methyltransferase F [Shigella flexneri
CCH060]
gi|404340678|gb|EJZ67096.1| ribosomal RNA small subunit methyltransferase F [Shigella flexneri
1485-80]
Length = 479
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 185 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 244
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 245 STCTLNQEENEAVC 258
Score = 45.1 bits (105), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 219 EGIAVDMHNR-IFQLPSFYDVLEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGK 275
EG ++ N L S + L G ++Q S++ AL D +R++D+ AAPG K
Sbjct: 72 EGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSK 131
Query: 276 TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
TT IA+ + +EG ++A + S ++V + + G+ + D
Sbjct: 132 TTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFD 176
>gi|387607453|ref|YP_006096309.1| hypothetical protein EC042_2000 [Escherichia coli 042]
gi|284921753|emb|CBG34826.1| conserved hypothetical protein [Escherichia coli 042]
Length = 481
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 187 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 246
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 247 STCTLNQEENEAVC 260
Score = 43.5 bits (101), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 239 LEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296
L G ++Q S++ AL D +R++D+ AAPG KTT IA+ + ++G ++A + S
Sbjct: 95 LSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNKGAILANEFSA 154
Query: 297 NKVMDIQKLAAEMGLKCITTYKLD 320
++V + + G++ + D
Sbjct: 155 SRVKVLHANISRCGIRNVALTHFD 178
>gi|257096822|sp|B2U477.2|RSMF_SHIB3 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
Length = 479
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 185 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 244
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 245 STCTLNQEENEAVC 258
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 219 EGIAVDMHNR-IFQLPSFYDVLEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGK 275
EG ++ N L S + L G ++Q S++ AL D +R++D+ AAPG K
Sbjct: 72 EGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSK 131
Query: 276 TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
TT IA+ + +EG ++A + S ++V + + G+ + D
Sbjct: 132 TTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFD 176
>gi|417681615|ref|ZP_12330989.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella boydii
3594-74]
gi|420352875|ref|ZP_14854003.1| ribosomal RNA small subunit methyltransferase F [Shigella boydii
4444-74]
gi|146325704|sp|Q321Y0.2|RSMF_SHIBS RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|332096600|gb|EGJ01594.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella boydii
3594-74]
gi|391280662|gb|EIQ39328.1| ribosomal RNA small subunit methyltransferase F [Shigella boydii
4444-74]
Length = 479
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 185 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 244
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 245 STCTLNQEENEAVC 258
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 219 EGIAVDMHNR-IFQLPSFYDVLEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGK 275
EG ++ N L S + L G ++Q S++ AL D +R++D+ AAPG K
Sbjct: 72 EGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSK 131
Query: 276 TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
TT IA+ + +EG ++A + S ++V + + G+ + D
Sbjct: 132 TTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFD 176
>gi|420335818|ref|ZP_14837418.1| ribosomal RNA small subunit methyltransferase F [Shigella flexneri
K-315]
gi|391264424|gb|EIQ23416.1| ribosomal RNA small subunit methyltransferase F [Shigella flexneri
K-315]
Length = 479
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 185 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 244
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 245 STCTLNQEENEAVC 258
Score = 42.0 bits (97), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 3/105 (2%)
Query: 219 EGIAVDMHNR-IFQLPSFYDVLEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGK 275
EG ++ N L S + L G ++Q S++ AL D +R++D+ AAPG K
Sbjct: 72 EGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSK 131
Query: 276 TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
TT IA+ + +E ++A + S ++V + + G+ + D
Sbjct: 132 TTQIAARMNNEEAILANEFSASRVKVLHANISRCGISNVALTHFD 176
>gi|417149853|ref|ZP_11989771.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
1.2264]
gi|386160865|gb|EIH22670.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
1.2264]
Length = 479
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 185 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 244
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 245 STCTLNQEENEAVC 258
Score = 45.1 bits (105), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 219 EGIAVDMHNR-IFQLPSFYDVLEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGK 275
EG ++ N L S + L G ++Q S++ AL D +R++D+ AAPG K
Sbjct: 72 EGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSK 131
Query: 276 TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
TT IA+ + +EG ++A + S ++V + + G+ + D
Sbjct: 132 TTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFD 176
>gi|415791541|ref|ZP_11495365.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
EPECa14]
gi|417298720|ref|ZP_12085958.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
900105 (10e)]
gi|417639370|ref|ZP_12289520.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
TX1999]
gi|419170394|ref|ZP_13714284.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC7A]
gi|419181043|ref|ZP_13724660.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC7C]
gi|419186479|ref|ZP_13729996.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC7D]
gi|419191764|ref|ZP_13735224.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC7E]
gi|419209699|ref|ZP_13752789.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC8C]
gi|419215732|ref|ZP_13758739.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC8D]
gi|419226913|ref|ZP_13769778.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC9A]
gi|419232258|ref|ZP_13775039.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC9B]
gi|419238034|ref|ZP_13780759.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC9C]
gi|419243473|ref|ZP_13786114.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC9D]
gi|419249295|ref|ZP_13791884.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC9E]
gi|419266931|ref|ZP_13809292.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC10C]
gi|419272765|ref|ZP_13815067.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC10D]
gi|419284186|ref|ZP_13826370.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC10F]
gi|419873598|ref|ZP_14395579.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O111:H11 str. CVM9534]
gi|419900258|ref|ZP_14419714.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O26:H11 str. CVM9942]
gi|419909256|ref|ZP_14427868.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O26:H11 str. CVM10026]
gi|420104211|ref|ZP_14614947.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O111:H11 str. CVM9455]
gi|420109095|ref|ZP_14619283.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O111:H11 str. CVM9553]
gi|420117140|ref|ZP_14626507.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O26:H11 str. CVM10021]
gi|420121918|ref|ZP_14630961.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O26:H11 str. CVM10030]
gi|420129763|ref|ZP_14638286.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O26:H11 str. CVM10224]
gi|420134108|ref|ZP_14642255.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O26:H11 str. CVM9952]
gi|420385829|ref|ZP_14885188.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EPECa12]
gi|424752028|ref|ZP_18180034.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O26:H11 str. CFSAN001629]
gi|424756014|ref|ZP_18183851.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O111:H11 str. CFSAN001630]
gi|425379593|ref|ZP_18763705.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1865]
gi|323153088|gb|EFZ39356.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
EPECa14]
gi|345393768|gb|EGX23537.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
TX1999]
gi|378016625|gb|EHV79505.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC7A]
gi|378024411|gb|EHV87065.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC7C]
gi|378030183|gb|EHV92787.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC7D]
gi|378039707|gb|EHW02195.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC7E]
gi|378055564|gb|EHW17826.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC8C]
gi|378063591|gb|EHW25759.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC8D]
gi|378076004|gb|EHW38017.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC9A]
gi|378078751|gb|EHW40730.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC9B]
gi|378084584|gb|EHW46486.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC9C]
gi|378092081|gb|EHW53908.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC9D]
gi|378096668|gb|EHW58438.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC9E]
gi|378112803|gb|EHW74376.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC10C]
gi|378118141|gb|EHW79650.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC10D]
gi|378134055|gb|EHW95385.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC10F]
gi|386257759|gb|EIJ13242.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
900105 (10e)]
gi|388352361|gb|EIL17485.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O111:H11 str. CVM9534]
gi|388373545|gb|EIL36814.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O26:H11 str. CVM10026]
gi|388378399|gb|EIL41140.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O26:H11 str. CVM9942]
gi|391306075|gb|EIQ63840.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EPECa12]
gi|394381779|gb|EJE59444.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O26:H11 str. CVM10224]
gi|394402494|gb|EJE78213.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O26:H11 str. CVM10021]
gi|394404947|gb|EJE80253.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O111:H11 str. CVM9455]
gi|394408010|gb|EJE82743.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O111:H11 str. CVM9553]
gi|394423002|gb|EJE96301.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O26:H11 str. CVM9952]
gi|394424485|gb|EJE97615.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O26:H11 str. CVM10030]
gi|408298385|gb|EKJ16328.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1865]
gi|421938317|gb|EKT95891.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O26:H11 str. CFSAN001629]
gi|421949824|gb|EKU06734.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O111:H11 str. CFSAN001630]
Length = 479
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 185 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 244
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 245 STCTLNQEENEAVC 258
Score = 45.1 bits (105), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 219 EGIAVDMHNR-IFQLPSFYDVLEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGK 275
EG ++ N L S + L G ++Q S++ AL D +R++D+ AAPG K
Sbjct: 72 EGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVMDVAAAPGSK 131
Query: 276 TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
TT IA+ + +EG ++A + S ++V + + G+ + D
Sbjct: 132 TTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFD 176
>gi|416281592|ref|ZP_11645900.1| Ribosomal RNA small subunit methyltransferase F [Shigella boydii
ATCC 9905]
gi|320181122|gb|EFW56041.1| Ribosomal RNA small subunit methyltransferase F [Shigella boydii
ATCC 9905]
Length = 479
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 185 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 244
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 245 STCTLNQEENEAVC 258
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 239 LEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296
L G ++Q S++ AL D +R++D+ AAPG KTT IA+ + +EG ++A + S
Sbjct: 93 LSGLFYIQEASSMLPVAALFADGNTPQRVMDVAAAPGSKTTQIAARMNNEGAILANEFSA 152
Query: 297 NKVMDIQKLAAEMGLKCITTYKLD 320
++V + + G+ + D
Sbjct: 153 SRVKVLHANISRCGISNVALTHFD 176
>gi|193069919|ref|ZP_03050868.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
E110019]
gi|443617913|ref|YP_007381769.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli APEC
O78]
gi|192956819|gb|EDV87273.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
E110019]
gi|443422421|gb|AGC87325.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli APEC
O78]
Length = 479
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 185 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 244
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 245 STCTLNQEENEAVC 258
Score = 45.1 bits (105), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 219 EGIAVDMHNR-IFQLPSFYDVLEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGK 275
EG ++ N L S + L G ++Q S++ AL D +R++D+ AAPG K
Sbjct: 72 EGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVMDVAAAPGSK 131
Query: 276 TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
TT IA+ + +EG ++A + S ++V + + G+ + D
Sbjct: 132 TTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFD 176
>gi|157157684|ref|YP_001463137.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
E24377A]
gi|253773210|ref|YP_003036041.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|260844181|ref|YP_003221959.1| methyltransferase [Escherichia coli O103:H2 str. 12009]
gi|297517982|ref|ZP_06936368.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
OP50]
gi|300924905|ref|ZP_07140836.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
182-1]
gi|300928863|ref|ZP_07144369.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
187-1]
gi|301327598|ref|ZP_07220815.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
78-1]
gi|422786424|ref|ZP_16839163.1| NOL1/NOP2/sun family protein [Escherichia coli H489]
gi|422816885|ref|ZP_16865099.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
M919]
gi|422956804|ref|ZP_16969278.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
H494]
gi|422987886|ref|ZP_16978662.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. C227-11]
gi|422994767|ref|ZP_16985531.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. C236-11]
gi|423003518|ref|ZP_16994264.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 04-8351]
gi|423010083|ref|ZP_17000821.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-3677]
gi|423019310|ref|ZP_17010019.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-4404]
gi|423024476|ref|ZP_17015173.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-4522]
gi|423030293|ref|ZP_17020981.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-4623]
gi|423038125|ref|ZP_17028799.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-4632 C1]
gi|423043245|ref|ZP_17033912.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-4632 C2]
gi|423044987|ref|ZP_17035648.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-4632 C3]
gi|423053520|ref|ZP_17042328.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-4632 C4]
gi|423060484|ref|ZP_17049280.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-4632 C5]
gi|423705819|ref|ZP_17680202.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
B799]
gi|429719342|ref|ZP_19254281.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. Ec11-9450]
gi|429724685|ref|ZP_19259552.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. Ec11-9990]
gi|429776390|ref|ZP_19308372.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-02030]
gi|429781165|ref|ZP_19313097.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-02033-1]
gi|429783424|ref|ZP_19315340.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-02092]
gi|429790796|ref|ZP_19322654.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-02093]
gi|429796528|ref|ZP_19328347.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-02281]
gi|429798221|ref|ZP_19330023.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-02318]
gi|429806734|ref|ZP_19338462.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-02913]
gi|429811082|ref|ZP_19342783.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-03439]
gi|429817154|ref|ZP_19348796.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-04080]
gi|429822365|ref|ZP_19353964.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-03943]
gi|429912882|ref|ZP_19378838.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. Ec11-9941]
gi|429913754|ref|ZP_19379702.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. Ec11-4984]
gi|429918796|ref|ZP_19384729.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. Ec11-5604]
gi|429924603|ref|ZP_19390517.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. Ec11-4986]
gi|429928541|ref|ZP_19394443.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. Ec11-4987]
gi|429935093|ref|ZP_19400980.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. Ec11-4988]
gi|429940764|ref|ZP_19406638.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. Ec11-5603]
gi|429948397|ref|ZP_19414252.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. Ec11-6006]
gi|429951042|ref|ZP_19416890.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. Ec12-0465]
gi|429954338|ref|ZP_19420174.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. Ec12-0466]
gi|432750286|ref|ZP_19984893.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE29]
gi|432809476|ref|ZP_20043369.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE101]
gi|157079714|gb|ABV19422.1| putative RNA methylase, NOL1/NOP2/sun family [Escherichia coli
E24377A]
gi|253324254|gb|ACT28856.1| RNA methylase, NOL1/NOP2/sun family [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|257759328|dbj|BAI30825.1| predicted methyltransferase [Escherichia coli O103:H2 str. 12009]
gi|300418923|gb|EFK02234.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
182-1]
gi|300463153|gb|EFK26646.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
187-1]
gi|300845847|gb|EFK73607.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
78-1]
gi|323961889|gb|EGB57488.1| NOL1/NOP2/sun family protein [Escherichia coli H489]
gi|354861602|gb|EHF22040.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. C236-11]
gi|354868955|gb|EHF29367.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. C227-11]
gi|354871051|gb|EHF31451.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 04-8351]
gi|354881451|gb|EHF41781.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-3677]
gi|354891169|gb|EHF51404.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-4404]
gi|354894002|gb|EHF54199.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-4522]
gi|354896149|gb|EHF56325.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-4632 C1]
gi|354899124|gb|EHF59274.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-4623]
gi|354900859|gb|EHF60991.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-4632 C2]
gi|354913888|gb|EHF73876.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-4632 C5]
gi|354917617|gb|EHF77580.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-4632 C3]
gi|354919558|gb|EHF79501.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-4632 C4]
gi|371599105|gb|EHN87895.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
H494]
gi|385539556|gb|EIF86388.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
M919]
gi|385713211|gb|EIG50147.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
B799]
gi|429346269|gb|EKY83049.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-02030]
gi|429348110|gb|EKY84881.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-02033-1]
gi|429354811|gb|EKY91507.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-02092]
gi|429363011|gb|EKY99655.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-02093]
gi|429364910|gb|EKZ01528.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-02281]
gi|429366634|gb|EKZ03236.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-02318]
gi|429377098|gb|EKZ13623.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-02913]
gi|429381609|gb|EKZ18094.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-03943]
gi|429384635|gb|EKZ21092.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-03439]
gi|429393308|gb|EKZ29704.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-04080]
gi|429393999|gb|EKZ30385.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. Ec11-9450]
gi|429407518|gb|EKZ43771.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. Ec11-4984]
gi|429408375|gb|EKZ44613.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. Ec11-9990]
gi|429409821|gb|EKZ46047.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. Ec11-4986]
gi|429426509|gb|EKZ62598.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. Ec11-5603]
gi|429426915|gb|EKZ63002.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. Ec11-4987]
gi|429431479|gb|EKZ67528.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. Ec11-5604]
gi|429433880|gb|EKZ69910.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. Ec11-4988]
gi|429440841|gb|EKZ76818.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. Ec11-6006]
gi|429444419|gb|EKZ80365.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. Ec12-0466]
gi|429450048|gb|EKZ85946.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. Ec12-0465]
gi|429453909|gb|EKZ89777.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. Ec11-9941]
gi|431297203|gb|ELF86861.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE29]
gi|431362244|gb|ELG48822.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE101]
Length = 481
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 187 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 246
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 247 STCTLNQEENEAVC 260
Score = 45.4 bits (106), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 219 EGIAVDMHNR-IFQLPSFYDVLEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGK 275
EG ++ N L S + L G ++Q S++ AL D +R++D+ AAPG K
Sbjct: 74 EGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVMDVAAAPGSK 133
Query: 276 TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
TT IA+ + +EG ++A + S ++V + + G+ + D
Sbjct: 134 TTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFD 178
>gi|432718952|ref|ZP_19953921.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE9]
gi|431262764|gb|ELF54753.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE9]
Length = 481
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 187 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 246
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 247 STCTLNQEENEAVC 260
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 239 LEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296
L G ++Q S++ AL D +R++D+ AAPG KTT IA+ + +EG ++A + S
Sbjct: 95 LSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGAILANEFSA 154
Query: 297 NKVMDIQKLAAEMGLKCITTYKLD 320
++V + + G+ + D
Sbjct: 155 SRVKVLHANISRCGISNVALTHFD 178
>gi|300951450|ref|ZP_07165288.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
116-1]
gi|300956658|ref|ZP_07168934.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
175-1]
gi|331642446|ref|ZP_08343581.1| ribosomal RNA small subunit methyltransferase F
(rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA
m5C1407methyltransferase) [Escherichia coli H736]
gi|386280895|ref|ZP_10058559.1| ribosomal RNA small subunit methyltransferase F [Escherichia sp.
4_1_40B]
gi|386595355|ref|YP_006091755.1| RNA methylase [Escherichia coli DH1]
gi|387621555|ref|YP_006129182.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli DH1]
gi|419941928|ref|ZP_14458580.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli 75]
gi|423704700|ref|ZP_17679123.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
H730]
gi|432417058|ref|ZP_19659669.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE44]
gi|432564032|ref|ZP_19800622.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE51]
gi|432627419|ref|ZP_19863399.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE77]
gi|432637061|ref|ZP_19872937.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE81]
gi|432685621|ref|ZP_19920923.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE156]
gi|432691773|ref|ZP_19927004.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE161]
gi|432704590|ref|ZP_19939694.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE171]
gi|432737323|ref|ZP_19972089.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE42]
gi|432955267|ref|ZP_20147207.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE197]
gi|433048113|ref|ZP_20235482.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE120]
gi|260449044|gb|ACX39466.1| RNA methylase, NOL1/NOP2/sun family [Escherichia coli DH1]
gi|300316536|gb|EFJ66320.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
175-1]
gi|300449302|gb|EFK12922.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
116-1]
gi|315136478|dbj|BAJ43637.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli DH1]
gi|331039244|gb|EGI11464.1| ribosomal RNA small subunit methyltransferase F
(rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA
m5C1407methyltransferase) [Escherichia coli H736]
gi|385705343|gb|EIG42408.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
H730]
gi|386122078|gb|EIG70691.1| ribosomal RNA small subunit methyltransferase F [Escherichia sp.
4_1_40B]
gi|388399343|gb|EIL60144.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli 75]
gi|430940420|gb|ELC60603.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE44]
gi|431094624|gb|ELE00255.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE51]
gi|431164112|gb|ELE64513.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE77]
gi|431172050|gb|ELE72201.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE81]
gi|431222656|gb|ELF19932.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE156]
gi|431227248|gb|ELF24385.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE161]
gi|431243896|gb|ELF38224.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE171]
gi|431284423|gb|ELF75281.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE42]
gi|431467938|gb|ELH47944.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE197]
gi|431566219|gb|ELI39258.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE120]
Length = 481
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 187 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 246
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 247 STCTLNQEENEAVC 260
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 219 EGIAVDMHNR-IFQLPSFYDVLEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGK 275
EG ++ N L S + L G ++Q S++ AL D +R++D+ AAPG K
Sbjct: 74 EGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSK 133
Query: 276 TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
TT I++ + +EG ++A + S ++V + + G+ + D
Sbjct: 134 TTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFD 178
>gi|74311854|ref|YP_310273.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shigella sonnei
Ss046]
gi|73855331|gb|AAZ88038.1| putative nucleolar proteins [Shigella sonnei Ss046]
Length = 481
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 187 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 246
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 247 STCTLNQEENEAVC 260
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 219 EGIAVDMHNR-IFQLPSFYDVLEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGK 275
EG ++ N L S + L G ++Q S++ AL D +R++D+ AAPG K
Sbjct: 74 EGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSK 133
Query: 276 TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
TT I++ + +EG ++A + S ++V + + G+ + D
Sbjct: 134 TTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFD 178
>gi|375265555|ref|YP_005022998.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio sp. EJY3]
gi|369840876|gb|AEX22020.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio sp. EJY3]
Length = 478
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 64/121 (52%), Gaps = 12/121 (9%)
Query: 378 VSNEKGVERTYVSKADTRKNMRR--MRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPC 435
V+NE R V A N+ R +RN N GR G+ P FD VLLDAPC
Sbjct: 144 VANEYAASRVKVLHA----NIERCGVRNAALSN--FDGRVFG--GWLPEQFDAVLLDAPC 195
Query: 436 SALG-LRPRLFAAEE-TIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEAL 493
S G LR A + + QS+ + Q+ + + A ++PGG++VYSTCT++ EN+ +
Sbjct: 196 SGEGTLRKDEDAMKNWSQQSVLDIADTQKDLIESAFHALKPGGVLVYSTCTLSTEENQQV 255
Query: 494 C 494
C
Sbjct: 256 C 256
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 220 GIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSI--VTAHALDPQKGERILDMCAAPGGKTT 277
G +D L + + + G ++Q S+ V+A ++ + ILD AAPG KTT
Sbjct: 72 GFWIDADESQVPLGNTAEHMSGLFYIQEASSMMPVSALFMNNEAYHAILDTAAAPGSKTT 131
Query: 278 AIASLLRDEGEVVAVDRSHNKV 299
IA+L+ +EG +VA + + ++V
Sbjct: 132 QIAALMNNEGVLVANEYAASRV 153
>gi|416260694|ref|ZP_11640304.1| Ribosomal RNA small subunit methyltransferase F [Shigella
dysenteriae CDC 74-1112]
gi|420380396|ref|ZP_14879862.1| ribosomal RNA small subunit methyltransferase F [Shigella
dysenteriae 225-75]
gi|320177052|gb|EFW52072.1| Ribosomal RNA small subunit methyltransferase F [Shigella
dysenteriae CDC 74-1112]
gi|391302357|gb|EIQ60219.1| ribosomal RNA small subunit methyltransferase F [Shigella
dysenteriae 225-75]
Length = 479
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 185 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 244
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 245 STCTLNQEENEAVC 258
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 219 EGIAVDMHNR-IFQLPSFYDVLEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGK 275
EG ++ N L S + L G ++Q S++ AL D +R++D+ AAPG K
Sbjct: 72 EGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSK 131
Query: 276 TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
TT IA+ + +EG ++A + S ++V + + G+ + D
Sbjct: 132 TTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFD 176
>gi|242045062|ref|XP_002460402.1| hypothetical protein SORBIDRAFT_02g027560 [Sorghum bicolor]
gi|241923779|gb|EER96923.1| hypothetical protein SORBIDRAFT_02g027560 [Sorghum bicolor]
Length = 574
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 426 FDRVLLDAPCSALGLRPRL--FAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTC 483
+D+VLLDAPCS LG+ + + L Q + D A LVRPGGI++YSTC
Sbjct: 452 YDKVLLDAPCSGLGVLSKRADLRWNRQFEDLEELICLQDELLDSASMLVRPGGILIYSTC 511
Query: 484 TINPGENEALCA 495
+I+P ENE A
Sbjct: 512 SIDPEENEKRIA 523
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 8/104 (7%)
Query: 213 GIFRASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAP 272
G R EG+ + + + +G +Q+ + + +DPQ GE I+D CAAP
Sbjct: 340 GFVRIQEGMQAVLQAGLLK--------DGICAVQDESAGLVVSVVDPQPGETIVDCCAAP 391
Query: 273 GGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITT 316
GGKT +AS L EG++ A+D + ++ + A GL I T
Sbjct: 392 GGKTLFMASRLSGEGKIQALDINKGRLRILMDAAKLHGLDDIIT 435
>gi|417596964|ref|ZP_12247612.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
3030-1]
gi|345355276|gb|EGW87487.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
3030-1]
Length = 479
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 185 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 244
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 245 STCTLNQEENEAVC 258
Score = 45.4 bits (106), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 219 EGIAVDMHNR-IFQLPSFYDVLEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGK 275
EG ++ N L S + L G ++Q S++ AL D +R++D+ AAPG K
Sbjct: 72 EGFWIERDNEDTLPLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVMDVAAAPGSK 131
Query: 276 TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
TT IA+ + +EG ++A + S ++V + + G+ + D
Sbjct: 132 TTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFD 176
>gi|191168496|ref|ZP_03030283.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
B7A]
gi|193066047|ref|ZP_03047104.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
E22]
gi|194429657|ref|ZP_03062175.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
B171]
gi|218695401|ref|YP_002403068.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
55989]
gi|251785283|ref|YP_002999587.1| 16S rRNA m[5]C1407 methyltransferase [Escherichia coli BL21(DE3)]
gi|254161895|ref|YP_003045003.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli B
str. REL606]
gi|254288683|ref|YP_003054431.1| methyltransferase [Escherichia coli BL21(DE3)]
gi|386614391|ref|YP_006134057.1| hypothetical protein UMNK88_2306 [Escherichia coli UMNK88]
gi|407469636|ref|YP_006783921.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O104:H4 str. 2009EL-2071]
gi|407481700|ref|YP_006778849.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O104:H4 str. 2011C-3493]
gi|410482249|ref|YP_006769795.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O104:H4 str. 2009EL-2050]
gi|415805167|ref|ZP_11501376.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
E128010]
gi|415825911|ref|ZP_11513267.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
OK1357]
gi|416346857|ref|ZP_11679948.1| Ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC4100B]
gi|417132416|ref|ZP_11977201.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
5.0588]
gi|417155758|ref|ZP_11993887.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
96.0497]
gi|417172282|ref|ZP_12002315.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
3.2608]
gi|417187714|ref|ZP_12012380.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
93.0624]
gi|417222802|ref|ZP_12026242.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
96.154]
gi|417247598|ref|ZP_12040354.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
9.0111]
gi|417252317|ref|ZP_12044080.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
4.0967]
gi|417581312|ref|ZP_12232117.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
STEC_B2F1]
gi|417623569|ref|ZP_12273874.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
STEC_H.1.8]
gi|417667223|ref|ZP_12316771.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
STEC_O31]
gi|417805354|ref|ZP_12452310.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O104:H4 str. LB226692]
gi|417865288|ref|ZP_12510332.1| hypothetical protein C22711_2220 [Escherichia coli O104:H4 str.
C227-11]
gi|419142535|ref|ZP_13687282.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC6A]
gi|419148387|ref|ZP_13693060.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC6B]
gi|419278211|ref|ZP_13820465.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC10E]
gi|419289729|ref|ZP_13831824.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC11A]
gi|419295062|ref|ZP_13837108.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC11B]
gi|419300381|ref|ZP_13842382.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC11C]
gi|419306478|ref|ZP_13848382.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC11D]
gi|419311503|ref|ZP_13853370.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC11E]
gi|419316860|ref|ZP_13858672.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC12A]
gi|419322990|ref|ZP_13864696.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC12B]
gi|419328980|ref|ZP_13870595.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC12C]
gi|419334530|ref|ZP_13876074.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC12D]
gi|419340095|ref|ZP_13881570.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC12E]
gi|419345451|ref|ZP_13886829.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC13A]
gi|419349872|ref|ZP_13891216.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC13B]
gi|419355267|ref|ZP_13896529.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC13C]
gi|419360292|ref|ZP_13901513.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC13D]
gi|419365370|ref|ZP_13906536.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC13E]
gi|419370239|ref|ZP_13911360.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC14A]
gi|419375709|ref|ZP_13916738.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC14B]
gi|419381025|ref|ZP_13921981.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC14C]
gi|419386299|ref|ZP_13927180.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC14D]
gi|419869471|ref|ZP_14391675.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O103:H2 str. CVM9450]
gi|420391517|ref|ZP_14890774.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EPEC C342-62]
gi|442598221|ref|ZP_21015994.1| Ribosomal RNA small subunit methyltransferase F [Escherichia coli
O5:K4(L):H4 str. ATCC 23502]
gi|450215327|ref|ZP_21895547.1| methyltransferase [Escherichia coli O08]
gi|254766864|sp|B7L7N7.1|RSMF_ECO55 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|257096803|sp|A7ZMV8.2|RSMF_ECO24 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|190901449|gb|EDV61211.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
B7A]
gi|192926284|gb|EDV80921.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
E22]
gi|194412299|gb|EDX28603.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
B171]
gi|218352133|emb|CAU97871.1| putative RNA AdoMet-dependent methyltransferase [Escherichia coli
55989]
gi|242377556|emb|CAQ32311.1| 16S rRNA m[5]C1407 methyltransferase [Escherichia coli BL21(DE3)]
gi|253973796|gb|ACT39467.1| predicted methyltransferase [Escherichia coli B str. REL606]
gi|253977990|gb|ACT43660.1| predicted methyltransferase [Escherichia coli BL21(DE3)]
gi|320198015|gb|EFW72623.1| Ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC4100B]
gi|323158681|gb|EFZ44695.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
E128010]
gi|323186416|gb|EFZ71764.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
OK1357]
gi|332343560|gb|AEE56894.1| conserved hypothetical protein [Escherichia coli UMNK88]
gi|340740257|gb|EGR74482.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O104:H4 str. LB226692]
gi|341918577|gb|EGT68190.1| hypothetical protein C22711_2220 [Escherichia coli O104:H4 str.
C227-11]
gi|345339935|gb|EGW72360.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
STEC_B2F1]
gi|345379481|gb|EGX11393.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
STEC_H.1.8]
gi|377994913|gb|EHV58034.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC6B]
gi|377996844|gb|EHV59952.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC6A]
gi|378129210|gb|EHW90582.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC10E]
gi|378131660|gb|EHW93017.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC11A]
gi|378142149|gb|EHX03351.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC11B]
gi|378149913|gb|EHX11033.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC11D]
gi|378151760|gb|EHX12867.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC11C]
gi|378158604|gb|EHX19622.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC11E]
gi|378167353|gb|EHX28266.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC12B]
gi|378170845|gb|EHX31720.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC12A]
gi|378172253|gb|EHX33110.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC12C]
gi|378186743|gb|EHX47366.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC12D]
gi|378187369|gb|EHX47981.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC13A]
gi|378190017|gb|EHX50603.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC12E]
gi|378201992|gb|EHX62432.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC13C]
gi|378202233|gb|EHX62672.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC13B]
gi|378205222|gb|EHX65637.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC13D]
gi|378214034|gb|EHX74343.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC13E]
gi|378218626|gb|EHX78897.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC14A]
gi|378220633|gb|EHX80885.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC14B]
gi|378229014|gb|EHX89164.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC14C]
gi|378232122|gb|EHX92224.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC14D]
gi|386150270|gb|EIH01559.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
5.0588]
gi|386168847|gb|EIH35363.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
96.0497]
gi|386179980|gb|EIH57454.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
3.2608]
gi|386181371|gb|EIH64134.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
93.0624]
gi|386202604|gb|EII01595.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
96.154]
gi|386208965|gb|EII19456.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
9.0111]
gi|386217892|gb|EII34377.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
4.0967]
gi|388342676|gb|EIL08710.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O103:H2 str. CVM9450]
gi|391313282|gb|EIQ70875.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EPEC C342-62]
gi|397785470|gb|EJK96320.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
STEC_O31]
gi|406777411|gb|AFS56835.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O104:H4 str. 2009EL-2050]
gi|407053997|gb|AFS74048.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O104:H4 str. 2011C-3493]
gi|407065671|gb|AFS86718.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O104:H4 str. 2009EL-2071]
gi|441653234|emb|CCQ01697.1| Ribosomal RNA small subunit methyltransferase F [Escherichia coli
O5:K4(L):H4 str. ATCC 23502]
gi|449318976|gb|EMD09033.1| methyltransferase [Escherichia coli O08]
Length = 479
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 185 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 244
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 245 STCTLNQEENEAVC 258
Score = 45.4 bits (106), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 219 EGIAVDMHNR-IFQLPSFYDVLEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGK 275
EG ++ N L S + L G ++Q S++ AL D +R++D+ AAPG K
Sbjct: 72 EGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVMDVAAAPGSK 131
Query: 276 TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
TT IA+ + +EG ++A + S ++V + + G+ + D
Sbjct: 132 TTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFD 176
>gi|324513565|gb|ADY45571.1| Methyltransferase [Ascaris suum]
Length = 438
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 57/92 (61%)
Query: 232 LPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVA 291
L S++ V++G + LQ+ S ++A L P+ G + D+CAAPG KT+ IA+LL G+V A
Sbjct: 202 LHSYWMVVDGYVLLQDKASCLSALLLKPKPGCEVFDVCAAPGMKTSHIAALLSGRGKVWA 261
Query: 292 VDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323
+D+S +V ++ + G+ ++ + D L+
Sbjct: 262 MDKSAERVETLRAMLQNAGVSNVSIFCGDFLR 293
>gi|422790919|ref|ZP_16843623.1| NOL1/NOP2/sun family protein [Escherichia coli TA007]
gi|323972658|gb|EGB67861.1| NOL1/NOP2/sun family protein [Escherichia coli TA007]
Length = 481
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 187 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 246
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 247 STCTLNQEENEAVC 260
Score = 45.4 bits (106), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 219 EGIAVDMHNR-IFQLPSFYDVLEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGK 275
EG ++ N L S + L G ++Q S++ AL D +R++D+ AAPG K
Sbjct: 74 EGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVMDVAAAPGSK 133
Query: 276 TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
TT IA+ + +EG ++A + S ++V + + G+ + D
Sbjct: 134 TTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFD 178
>gi|390934823|ref|YP_006392328.1| sun protein [Thermoanaerobacterium saccharolyticum JW/SL-YS485]
gi|389570324|gb|AFK86729.1| sun protein [Thermoanaerobacterium saccharolyticum JW/SL-YS485]
Length = 447
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 53/84 (63%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G + +Q+ +++ + AL P G+ I+D+C+APGGKTT I+ L+ +EG+V+A D +K+
Sbjct: 230 DGFVQIQDEGAMIISKALSPNLGDLIIDVCSAPGGKTTHISQLMNNEGKVIAFDIHEHKI 289
Query: 300 MDIQKLAAEMGLKCITTYKLDALK 323
I+ +G+ + Y D+ K
Sbjct: 290 DLIKMNCKRLGVNNVDAYVFDSTK 313
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 427 DRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTC 483
D+VL D PC+ +G+ +P + + T + ++ Q + + + V+ GG I+YSTC
Sbjct: 323 DKVLADVPCTGIGIIRKKPDIKLKDYTEEDIKKLNNIQYSILSSSSKYVKKGGYILYSTC 382
Query: 484 TINPGEN 490
TI EN
Sbjct: 383 TIGKEEN 389
>gi|355560554|gb|EHH17240.1| hypothetical protein EGK_13590, partial [Macaca mulatta]
Length = 399
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 68/136 (50%), Gaps = 8/136 (5%)
Query: 194 YFERSGL-YIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVLE------GEIFLQ 246
YF+R G Y G+ +++ + + + + + P+ D+ E G + LQ
Sbjct: 82 YFKRQGFSYQGRASSLDDLRAL-KGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHLILQ 140
Query: 247 NLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLA 306
+ S + A L+P G ++D CAAPG KT+ +A+LL+++G++ A D ++ + L
Sbjct: 141 DRASCLPAMLLNPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLL 200
Query: 307 AEMGLKCITTYKLDAL 322
A G+ C + D L
Sbjct: 201 ARAGISCCELAEEDFL 216
>gi|415809119|ref|ZP_11501920.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
LT-68]
gi|323175088|gb|EFZ60702.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
LT-68]
Length = 479
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 185 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 244
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 245 STCTLNQEENEAVC 258
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 219 EGIAVDMHNR-IFQLPSFYDVLEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGK 275
EG ++ N L S + L G ++Q S++ AL D +R++D+ AAPG K
Sbjct: 72 EGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSK 131
Query: 276 TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
TT I++ + +EG ++A + S ++V + + G+ + D
Sbjct: 132 TTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFD 176
>gi|306830710|ref|ZP_07463875.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
gallolyticus subsp. gallolyticus TX20005]
gi|304427218|gb|EFM30325.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
gallolyticus subsp. gallolyticus TX20005]
Length = 440
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 45/73 (61%), Gaps = 4/73 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F+P+SFD++L+DAPCS +GL +P + +E Q + Q ++ D Q +R GGI
Sbjct: 316 FAPDSFDKILVDAPCSGIGLIRRKPDVKYNKEN-QDFSALQEIQLQILDSVCQTLRKGGI 374
Query: 478 IVYSTCTINPGEN 490
I YSTCTI EN
Sbjct: 375 ITYSTCTIFDEEN 387
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 2/82 (2%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G+I +Q+ S + A LD Q E ILD CAAPGGKTT +AS L+ +G + A+D +K+
Sbjct: 229 GDITIQDESSQLVAPTLDIQGNEDILDACAAPGGKTTHMASYLK-KGHITALDLYDHKLT 287
Query: 301 DIQKLAAEMGL-KCITTYKLDA 321
+ A + + I+T K+DA
Sbjct: 288 LVMDNAKRLHVADKISTQKMDA 309
>gi|194439069|ref|ZP_03071152.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
101-1]
gi|194422028|gb|EDX38032.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
101-1]
Length = 479
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 185 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 244
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 245 STCTLNQEENEAVC 258
Score = 45.1 bits (105), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 219 EGIAVDMHNR-IFQLPSFYDVLEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGK 275
EG ++ N L S + L G ++Q S++ AL D +R++D+ AAPG K
Sbjct: 72 EGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVMDVAAAPGSK 131
Query: 276 TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
TT IA+ + +EG ++A + S ++V + + G+ + D
Sbjct: 132 TTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFD 176
>gi|383177988|ref|YP_005455993.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shigella sonnei 53G]
gi|414575611|ref|ZP_11432811.1| ribosomal RNA small subunit methyltransferase F [Shigella sonnei
3233-85]
gi|415848889|ref|ZP_11526389.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella sonnei
53G]
gi|418264593|ref|ZP_12884908.1| ribosomal RNA small subunit methyltransferase F [Shigella sonnei
str. Moseley]
gi|420358135|ref|ZP_14859128.1| ribosomal RNA small subunit methyltransferase F [Shigella sonnei
3226-85]
gi|420363170|ref|ZP_14864072.1| ribosomal RNA small subunit methyltransferase F [Shigella sonnei
4822-66]
gi|146325708|sp|Q3Z2H4.2|RSMF_SHISS RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|323166480|gb|EFZ52243.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella sonnei
53G]
gi|391285269|gb|EIQ43849.1| ribosomal RNA small subunit methyltransferase F [Shigella sonnei
3226-85]
gi|391286842|gb|EIQ45376.1| ribosomal RNA small subunit methyltransferase F [Shigella sonnei
3233-85]
gi|391295287|gb|EIQ53456.1| ribosomal RNA small subunit methyltransferase F [Shigella sonnei
4822-66]
gi|397901745|gb|EJL18085.1| ribosomal RNA small subunit methyltransferase F [Shigella sonnei
str. Moseley]
Length = 479
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 185 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 244
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 245 STCTLNQEENEAVC 258
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 219 EGIAVDMHNR-IFQLPSFYDVLEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGK 275
EG ++ N L S + L G ++Q S++ AL D +R++D+ AAPG K
Sbjct: 72 EGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSK 131
Query: 276 TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
TT I++ + +EG ++A + S ++V + + G+ + D
Sbjct: 132 TTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFD 176
>gi|50425343|ref|XP_461265.1| DEHA2F21054p [Debaryomyces hansenii CBS767]
gi|49656934|emb|CAG89654.1| DEHA2F21054p [Debaryomyces hansenii CBS767]
Length = 611
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 50/81 (61%), Gaps = 4/81 (4%)
Query: 237 DVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVD--- 293
+ L G+ LQ S + ALDPQ+ ERILDM AAPGGKTT I++++++ G V A D
Sbjct: 319 EYLAGQYILQAASSFLPVMALDPQENERILDMAAAPGGKTTYISAMMKNTGCVFANDANK 378
Query: 294 -RSHNKVMDIQKLAAEMGLKC 313
R+ + + +I +L + + C
Sbjct: 379 ARTKSLIANIHRLGCKNTIVC 399
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 14/79 (17%)
Query: 426 FDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKY------QRRMFDQAVQLVRP----G 475
FDR+LLDAPCS G + A +ET++ R + Q+++ A+ V G
Sbjct: 413 FDRILLDAPCSGTG----VIAKDETVKVSRTEKDFMQIPHLQKQLLLSAIDSVDANSATG 468
Query: 476 GIIVYSTCTINPGENEALC 494
G+IVYSTC++ ENE++
Sbjct: 469 GVIVYSTCSVAVEENESVV 487
>gi|422781264|ref|ZP_16834049.1| NOL1/NOP2/sun family protein [Escherichia coli TW10509]
gi|323977982|gb|EGB73068.1| NOL1/NOP2/sun family protein [Escherichia coli TW10509]
Length = 479
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 185 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 244
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 245 STCTLNQEENEAVC 258
Score = 45.1 bits (105), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 239 LEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296
L G ++Q S++ AL D +R++D+ AAPG KTT IA+ + +EG ++A + S
Sbjct: 93 LSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGAILANEFSA 152
Query: 297 NKVMDIQKLAAEMGLKCITTYKLD 320
++V + + G++ + D
Sbjct: 153 SRVKVLHANISRCGIRNVALTHFD 176
>gi|110805371|ref|YP_688891.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shigella flexneri 5
str. 8401]
gi|424837805|ref|ZP_18262442.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shigella flexneri 5a
str. M90T]
gi|110614919|gb|ABF03586.1| putative nucleolar proteins [Shigella flexneri 5 str. 8401]
gi|383466857|gb|EID61878.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shigella flexneri 5a
str. M90T]
Length = 481
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 411 LGGRAENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQA 468
GGR + P FD +LLDAPCS G+ + A + N QR + D A
Sbjct: 177 FGGRVFGAA--VPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSA 234
Query: 469 VQLVRPGGIIVYSTCTINPGENEALC 494
+RPGG +VYSTCT+N ENEA+C
Sbjct: 235 FHALRPGGTLVYSTCTLNREENEAVC 260
Score = 42.7 bits (99), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 219 EGIAVDMHNR-IFQLPSFYDVLEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGK 275
EG ++ N L S + L G ++Q S++ AL D +R++D+ AAPG K
Sbjct: 74 EGFWIERDNEDALPLGSTTEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSK 133
Query: 276 TTAIASLLRDEGEVVAVDRSHNKV 299
TT IA+ + +EG ++A + S + V
Sbjct: 134 TTQIAARMNNEGAILANEFSASWV 157
>gi|78186474|ref|YP_374517.1| Fmu, rRNA SAM-dependent methyltransferase [Chlorobium luteolum DSM
273]
gi|78166376|gb|ABB23474.1| Fmu, rRNA SAM-dependent methyltransferase [Chlorobium luteolum DSM
273]
Length = 442
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 46/82 (56%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G +QN + LDPQ ++LD+CAAPGGK A L+ + GE++A+DR K
Sbjct: 226 QGLASVQNPTQALAVLLLDPQPDWKVLDLCAAPGGKAAHAAELMGNRGEIIALDRYPQKT 285
Query: 300 MDIQKLAAEMGLKCITTYKLDA 321
+ IQ LA +G+ I DA
Sbjct: 286 LRIQALADTLGISIIEARTGDA 307
>gi|419882726|ref|ZP_14403926.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF, partial [Escherichia
coli O111:H11 str. CVM9545]
gi|388360776|gb|EIL24942.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF, partial [Escherichia
coli O111:H11 str. CVM9545]
Length = 314
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 20 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 79
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 80 STCTLNQEENEAVC 93
>gi|417701986|ref|ZP_12351107.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella
flexneri K-218]
gi|417736690|ref|ZP_12385304.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella
flexneri 4343-70]
gi|418255613|ref|ZP_12879894.1| ribosomal RNA small subunit methyltransferase F [Shigella flexneri
6603-63]
gi|146325706|sp|Q0T529.2|RSMF_SHIF8 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|146325707|sp|Q83RJ3.2|RSMF_SHIFL RecName: Full=Putative ribosomal RNA small subunit
methyltransferase F; AltName: Full=16S rRNA m5C1407
methyltransferase; AltName: Full=rRNA
(cytosine-C(5)-)-methyltransferase RsmF
gi|332762420|gb|EGJ92685.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella
flexneri 4343-70]
gi|333004220|gb|EGK23751.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella
flexneri K-218]
gi|397898455|gb|EJL14838.1| ribosomal RNA small subunit methyltransferase F [Shigella flexneri
6603-63]
Length = 479
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 411 LGGRAENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQA 468
GGR + P FD +LLDAPCS G+ + A + N QR + D A
Sbjct: 175 FGGRVFGAA--VPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSA 232
Query: 469 VQLVRPGGIIVYSTCTINPGENEALC 494
+RPGG +VYSTCT+N ENEA+C
Sbjct: 233 FHALRPGGTLVYSTCTLNREENEAVC 258
Score = 42.7 bits (99), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 219 EGIAVDMHNR-IFQLPSFYDVLEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGK 275
EG ++ N L S + L G ++Q S++ AL D +R++D+ AAPG K
Sbjct: 72 EGFWIERDNEDALPLGSTTEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSK 131
Query: 276 TTAIASLLRDEGEVVAVDRSHNKV 299
TT IA+ + +EG ++A + S + V
Sbjct: 132 TTQIAARMNNEGAILANEFSASWV 155
>gi|417115847|ref|ZP_11966983.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
1.2741]
gi|386141266|gb|EIG82418.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
1.2741]
Length = 479
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 185 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 244
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 245 STCTLNQEENEAVC 258
Score = 45.1 bits (105), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 239 LEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296
L G ++Q S++ AL D +R++D+ AAPG KTT IA+ + +EG ++A + S
Sbjct: 93 LSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGAILANEFSA 152
Query: 297 NKVMDIQKLAAEMGLKCITTYKLD 320
++V + + G++ + D
Sbjct: 153 SRVKVLHANISRCGIRNVALTHFD 176
>gi|417707470|ref|ZP_12356515.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella
flexneri VA-6]
gi|420330958|ref|ZP_14832634.1| ribosomal RNA small subunit methyltransferase F [Shigella flexneri
K-1770]
gi|333003634|gb|EGK23170.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella
flexneri VA-6]
gi|391254833|gb|EIQ13991.1| ribosomal RNA small subunit methyltransferase F [Shigella flexneri
K-1770]
Length = 479
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 411 LGGRAENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQA 468
GGR + P FD +LLDAPCS G+ + A + N QR + D A
Sbjct: 175 FGGRVFGAS--VPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSA 232
Query: 469 VQLVRPGGIIVYSTCTINPGENEALC 494
+RPGG +VYSTCT+N ENEA+C
Sbjct: 233 FHALRPGGTLVYSTCTLNREENEAVC 258
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 219 EGIAVDMHNR-IFQLPSFYDVLEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGK 275
EG ++ N L S + L G ++Q S++ AL D +R++D+ AAPG K
Sbjct: 72 EGFWIERDNEDALPLGSTTEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSK 131
Query: 276 TTAIASLLRDEGEVVAVDRSHNKV 299
TT IA+ + +EG ++A + S ++V
Sbjct: 132 TTQIAARMNNEGAILANEFSASRV 155
>gi|301645651|ref|ZP_07245579.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
146-1]
gi|301076080|gb|EFK90886.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
146-1]
Length = 481
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 187 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 246
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 247 STCTLNQEENEAVC 260
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 219 EGIAVDMHNR-IFQLPSFYDVLEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGK 275
EG ++ N L S + L G ++Q S++ AL D +R++D+ AAPG K
Sbjct: 74 EGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSK 133
Query: 276 TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
TT I++ + +EG ++A + S ++V + + G+ + D
Sbjct: 134 TTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFD 178
>gi|422799120|ref|ZP_16847619.1| NOL1/NOP2/sun family protein [Escherichia coli M863]
gi|323968602|gb|EGB64008.1| NOL1/NOP2/sun family protein [Escherichia coli M863]
Length = 481
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 187 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 246
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 247 STCTLNQEENEAVC 260
Score = 45.1 bits (105), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 239 LEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296
L G ++Q S++ AL D +R++D+ AAPG KTT IA+ + +EG ++A + S
Sbjct: 95 LSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGAILANEFSA 154
Query: 297 NKVMDIQKLAAEMGLKCITTYKLD 320
++V + + G++ + D
Sbjct: 155 SRVKVLHANISRCGIRNVALTHFD 178
>gi|189499780|ref|YP_001959250.1| sun protein [Chlorobium phaeobacteroides BS1]
gi|189495221|gb|ACE03769.1| sun protein [Chlorobium phaeobacteroides BS1]
Length = 447
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 46/76 (60%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G + +QN + LDP E ILD+C+APGGK T +A L++++G ++AVDR NK
Sbjct: 229 GLVTVQNPTQALPCLLLDPMPDETILDLCSAPGGKATFMAELMKNKGSILAVDRYRNKCE 288
Query: 301 DIQKLAAEMGLKCITT 316
+ + A +G+ I T
Sbjct: 289 KVMRRAQALGISIIET 304
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 415 AENSKGFSPNSF-DRVLLDAPCS---ALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQ 470
A+N++ F P+ +LLD PC+ LG +P L T Q L Q ++ D A
Sbjct: 306 ADNAETFQPDKQPSAILLDVPCTGTGVLGKKPDL-RWRITPQQLDELTILQGKLLDHAAG 364
Query: 471 LVRPGGIIVYSTCTINPGENE 491
L+ PGG++VY+TC+I P EN+
Sbjct: 365 LLNPGGVLVYATCSIEPEENQ 385
>gi|432392241|ref|ZP_19635081.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE21]
gi|430920058|gb|ELC40978.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE21]
Length = 481
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 187 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 246
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 247 STCTLNQEENEAVC 260
Score = 45.1 bits (105), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 239 LEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296
L G ++Q S++ AL D +R++D+ AAPG KTT IA+ + +EG ++A + S
Sbjct: 95 LSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGAILANEFSA 154
Query: 297 NKVMDIQKLAAEMGLKCITTYKLD 320
++V + + G++ + D
Sbjct: 155 SRVKVLHANISRCGIRNVALTHFD 178
>gi|403222159|dbj|BAM40291.1| nucleolar protein [Theileria orientalis strain Shintoku]
Length = 515
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 45/70 (64%), Gaps = 2/70 (2%)
Query: 426 FDRVLLDAPCSALGLRPR--LFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTC 483
DR+LLDAPCS LG+ R + ++ L+ + Q+++ VQLV+P G+IVYSTC
Sbjct: 283 MDRILLDAPCSGLGVISRDPSIKVKRGMKDLQKNSNLQKQLLATCVQLVKPKGVIVYSTC 342
Query: 484 TINPGENEAL 493
+++ ENE +
Sbjct: 343 SLSIEENEQV 352
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 2/93 (2%)
Query: 219 EGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTA 278
EG+ V H+ + + + L G LQ+ S++ AL P++ E++LDMCAAPGGKTT
Sbjct: 173 EGLVV--HSSKVPIGATPEYLGGHYMLQSASSLIPVLALGPKQNEKVLDMCAAPGGKTTH 230
Query: 279 IASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL 311
IA + + G + A D + + + MG+
Sbjct: 231 IAQFMNNTGILFANDANKERCKSLVSNIHRMGI 263
>gi|420264395|ref|ZP_14767026.1| sun protein [Enterococcus sp. C1]
gi|394768368|gb|EJF48296.1| sun protein [Enterococcus sp. C1]
Length = 452
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Query: 416 ENSKGFSPNSFDRVLLDAPCSALGLRPRL--FAAEETIQSLRNHGKYQRRMFDQAVQLVR 473
E ++ F+P FDR+L+DAPCS LGL R +T + + QR + + A ++
Sbjct: 322 ETAQTFAPEQFDRILVDAPCSGLGLMRRKPDIKYSKTEADFQRLPQIQREILESAAPTLK 381
Query: 474 PGGIIVYSTCTINPGENEALCA 495
GI+VYSTCTI EN+ + A
Sbjct: 382 KSGIMVYSTCTILEEENQQVVA 403
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLR--DEGEVVAVDRSHN 297
EG + +Q+ S++ A L + ++LD CAAPGGKTT IA+ L + G+V A+D +
Sbjct: 236 EGLLTIQDESSMLVAPVLQVARNHQVLDACAAPGGKTTHIAAFLSAAEGGKVTALDIHAH 295
Query: 298 KVMDIQKLAAEMGLKCIT-TYKLDA 321
KV IQ+ A +G++ + T +DA
Sbjct: 296 KVKLIQQNAQRLGVEAVVETRVMDA 320
>gi|383419865|gb|AFH33146.1| putative methyltransferase NSUN5 isoform 1 [Macaca mulatta]
gi|384948132|gb|AFI37671.1| putative methyltransferase NSUN5 isoform 1 [Macaca mulatta]
Length = 466
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 70/139 (50%), Gaps = 14/139 (10%)
Query: 194 YFERSGL-YIGQGTAMMSRAGIFRASEG---IAVDMHNRIFQLPSFYDVLE------GEI 243
YF+R G Y G+ +++ RA +G + + + P+ D+ E G +
Sbjct: 153 YFKRQGFSYQGRASSLDD----LRALKGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHL 208
Query: 244 FLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQ 303
LQ+ S + A L+P G ++D CAAPG KT+ +A+LL+++G++ A D ++ +
Sbjct: 209 ILQDRASCLPAMLLNPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMA 268
Query: 304 KLAAEMGLKCITTYKLDAL 322
L A G+ C + D L
Sbjct: 269 TLLARAGISCCELAEEDFL 287
>gi|417732337|ref|ZP_12381006.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella
flexneri 2747-71]
gi|417743036|ref|ZP_12391577.1| ribosomal RNA small subunit methyltransferase F [Shigella flexneri
2930-71]
gi|332760448|gb|EGJ90737.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella
flexneri 2747-71]
gi|332767094|gb|EGJ97289.1| ribosomal RNA small subunit methyltransferase F [Shigella flexneri
2930-71]
Length = 421
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 411 LGGRAENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQA 468
GGR + P FD +LLDAPCS G+ + A + N QR + D A
Sbjct: 175 FGGRVFGAA--VPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSA 232
Query: 469 VQLVRPGGIIVYSTCTINPGENEALC 494
+RPGG +VYSTCT+N ENEA+C
Sbjct: 233 FHALRPGGTLVYSTCTLNREENEAVC 258
Score = 42.7 bits (99), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 219 EGIAVDMHNR-IFQLPSFYDVLEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGK 275
EG ++ N L S + L G ++Q S++ AL D +R++D+ AAPG K
Sbjct: 72 EGFWIERDNEDALPLGSTTEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSK 131
Query: 276 TTAIASLLRDEGEVVAVDRSHNKV 299
TT IA+ + +EG ++A + S + V
Sbjct: 132 TTQIAARMNNEGAILANEFSASWV 155
>gi|332139428|ref|YP_004425166.1| 16S rRNA methyltransferase B [Alteromonas macleodii str. 'Deep
ecotype']
gi|327549450|gb|AEA96168.1| 16S rRNA methyltransferase B [Alteromonas macleodii str. 'Deep
ecotype']
Length = 439
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 55/103 (53%), Gaps = 12/103 (11%)
Query: 396 KNMRRMRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLR 455
+NM R+++ Q G A + FDR+LLDAPCSA G+ R I+ LR
Sbjct: 293 ENMTRLQHKVDIRQ--GDAANPESWWDGKPFDRILLDAPCSATGVIRR----HPDIRWLR 346
Query: 456 ------NHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEA 492
N + QRR+ D L++PGG ++Y+TC+I P EN A
Sbjct: 347 KANDIDNLAQLQRRILDTLWGLLKPGGTLLYATCSILPKENMA 389
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 220 GIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAI 279
I + I LP F +G +Q+ + + AH L PQ ERILD CAAPGGKT I
Sbjct: 212 AIVLSQREDITGLPGFE---KGHFAVQDGAAQLAAHYLQPQANERILDCCAAPGGKTGHI 268
Query: 280 ASLLRDEGEVVAVDRSHNKVMDIQK 304
D V+A+D ++ +++
Sbjct: 269 VECAPDTEYVLALDADATRLKRVEE 293
>gi|448385826|ref|ZP_21564120.1| RNA methylase, NOL1/NOP2/sun family protein [Haloterrigena
thermotolerans DSM 11522]
gi|445656236|gb|ELZ09075.1| RNA methylase, NOL1/NOP2/sun family protein [Haloterrigena
thermotolerans DSM 11522]
Length = 302
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 63/127 (49%), Gaps = 16/127 (12%)
Query: 207 AMMSRAGIFRASEGIA---VDMHNRIFQL---------PSFYDVLEGEIFLQNLPSIVTA 254
A + RA +EG+A D + R+ L SF+ G+ + +P +V
Sbjct: 36 ASVDRALATLEAEGLAYEQADWNPRVLDLETDSPGSTWASFHGFTHGQEEVSAVPPVV-- 93
Query: 255 HALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCI 314
LDP+ GER+ D CAAPGGK T IA+L+ D G VVA D + ++ ++ A +G +
Sbjct: 94 --LDPEPGERVWDCCAAPGGKATQIAALMDDRGTVVANDNNLGRISALRFNAERLGATSL 151
Query: 315 TTYKLDA 321
DA
Sbjct: 152 AVTNADA 158
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 421 FSPNSFDRVLLDAPCSALG-LRPRLFAAEETIQS-LRNHGKYQRRMFDQAVQLVRPGGII 478
F + FDR L+DAPCS G +R A + + + + Q+ + +A+Q R GG +
Sbjct: 166 FDFDEFDRTLVDAPCSCEGTIRKNPDALDNWSEGHISSVAGIQKGIIRRAIQATREGGTV 225
Query: 479 VYSTCTINPGENEAL 493
VYSTCT P ENEA+
Sbjct: 226 VYSTCTFAPEENEAV 240
>gi|432329310|ref|YP_007247454.1| NOL1/NOP2/sun family putative RNA methylase [Aciduliprofundum sp.
MAR08-339]
gi|432136019|gb|AGB05288.1| NOL1/NOP2/sun family putative RNA methylase [Aciduliprofundum sp.
MAR08-339]
Length = 303
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 49/81 (60%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G ++Q+L S+ ALDP+K + ILDM AAPG KTT IA ++ +EG +VA D S +++
Sbjct: 85 GYYYVQDLSSMAPVFALDPRKDDVILDMAAAPGSKTTMIAEIMENEGTIVANDISLSRIK 144
Query: 301 DIQKLAAEMGLKCITTYKLDA 321
+ +G+ +LDA
Sbjct: 145 SLGGNLERLGITNTIMTRLDA 165
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 426 FDRVLLDAPCS---ALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYST 482
F ++LLDAPCS ++ P F + + L G+ Q+RM A + + GIIVYST
Sbjct: 174 FSKILLDAPCSGESSVRKNPWGFRYPKKREHLY-LGEQQKRMLKNAARNLEENGIIVYST 232
Query: 483 CTINPGENEALC 494
CT P ENE++
Sbjct: 233 CTFAPEENESVV 244
>gi|417689821|ref|ZP_12339049.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella boydii
5216-82]
gi|332089959|gb|EGI95059.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella boydii
5216-82]
Length = 325
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 185 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 244
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 245 STCTLNQEENEAVC 258
Score = 43.5 bits (101), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 239 LEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296
L G ++Q S++ AL D +R++D+ AAPG KTT IA+ + +EG ++A + S
Sbjct: 93 LSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGAILANEFSA 152
Query: 297 NKVMDIQKLAAEMGLKCITTYKLD 320
++V + + G+ + D
Sbjct: 153 SRVKVLHANISRCGISNVALTHFD 176
>gi|442771883|gb|AGC72557.1| ribosomal RNA small subunit methyltransferase B [uncultured
bacterium A1Q1_fos_862]
Length = 388
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 421 FSPNSFDRVLLDAPCSALG-LRPRLFAAEE-TIQSLRNHGKYQRRMFDQAVQLVRPGGII 478
F DRVLLDAPCS LG LR R A T + Q+R+FD AV LVRPGG++
Sbjct: 256 FRHGVADRVLLDAPCSGLGVLRRRADARWRLTPDVVERLSLLQKRLFDAAVPLVRPGGVL 315
Query: 479 VYSTCTINPGENEALCA 495
VYS CT++ E + A
Sbjct: 316 VYSVCTLSRAETTGVDA 332
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 244 FLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQ 303
+ Q+L S A + + GE I+D+CAAPGGK+TA+A+ EVVA D ++ I+
Sbjct: 177 YTQDLGSQWVAELVGARPGELIIDLCAAPGGKSTAMAA---SGAEVVAADLQESRAGLIR 233
Query: 304 KLAAEMGLKCITTYKLDALK 323
+G + D L+
Sbjct: 234 SNVEALGSTGVIVAVADGLR 253
>gi|417712308|ref|ZP_12361297.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella
flexneri K-272]
gi|417716994|ref|ZP_12365912.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella
flexneri K-227]
gi|417827620|ref|ZP_12474186.1| ribosomal RNA small subunit methyltransferase F [Shigella flexneri
J1713]
gi|420320069|ref|ZP_14821907.1| ribosomal RNA small subunit methyltransferase F [Shigella flexneri
2850-71]
gi|333006730|gb|EGK26227.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella
flexneri K-272]
gi|333018648|gb|EGK37941.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella
flexneri K-227]
gi|335575906|gb|EGM62173.1| ribosomal RNA small subunit methyltransferase F [Shigella flexneri
J1713]
gi|391251109|gb|EIQ10325.1| ribosomal RNA small subunit methyltransferase F [Shigella flexneri
2850-71]
Length = 479
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 411 LGGRAENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQA 468
GGR + P FD +LLDAPCS G+ + A + N QR + D A
Sbjct: 175 FGGRVFGAA--VPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSA 232
Query: 469 VQLVRPGGIIVYSTCTINPGENEALC 494
+RPGG +VYSTCT+N ENEA+C
Sbjct: 233 FHALRPGGTLVYSTCTLNREENEAVC 258
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 219 EGIAVDMHNR-IFQLPSFYDVLEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGK 275
EG ++ N L S + L G ++Q S++ AL D +R++D+ AAPG K
Sbjct: 72 EGFWIERDNEDALPLGSTTEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSK 131
Query: 276 TTAIASLLRDEGEVVAVDRSHNKV 299
TT IA+ + +EG ++A + S ++V
Sbjct: 132 TTQIAARMNNEGAILANEFSASRV 155
>gi|327283575|ref|XP_003226516.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
[Anolis carolinensis]
Length = 707
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 47/73 (64%), Gaps = 4/73 (5%)
Query: 237 DVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVA----V 292
+ L G+ LQ S++ AL PQ+ ERILDMC APGGKT+ IA L+++ G ++A
Sbjct: 362 EYLAGQYMLQGASSLLPVMALAPQENERILDMCCAPGGKTSYIAQLMKNTGVILANDSNA 421
Query: 293 DRSHNKVMDIQKL 305
DR H+ V ++ +L
Sbjct: 422 DRLHSVVGNLHRL 434
Score = 41.6 bits (96), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 14/76 (18%)
Query: 426 FDRVLLDAPCSALGLRPRLFAAEETIQSLRNH------GKYQRRMFDQAVQLV----RPG 475
FDRVLLDAPCS G + + + T+++ ++ Q+ + A+ V G
Sbjct: 456 FDRVLLDAPCSGTG----VISKDPTVKTNKDEKDILRCAHLQKELILSAIDSVNAASETG 511
Query: 476 GIIVYSTCTINPGENE 491
G IVY TC++ ENE
Sbjct: 512 GYIVYCTCSVMVEENE 527
>gi|317052704|ref|YP_004113820.1| RNA methylase, NOL1/NOP2/sun family [Desulfurispirillum indicum S5]
gi|316947788|gb|ADU67264.1| RNA methylase, NOL1/NOP2/sun family [Desulfurispirillum indicum S5]
Length = 316
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 48/81 (59%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
EG I++QNL S+ L+P+ GE++LD+ AAPGGKT +A+L+ + G + AV+ ++
Sbjct: 90 EGRIYIQNLSSMAPVLLLNPRPGEQVLDLAAAPGGKTLHLAALMENRGWISAVEAVKDRF 149
Query: 300 MDIQKLAAEMGLKCITTYKLD 320
++ G + TY D
Sbjct: 150 FRLKANVEAFGASIVHTYLRD 170
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 43/79 (54%), Gaps = 9/79 (11%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFA---AEETIQS---LRNHGKYQRRMFDQAVQLVRPGG 476
P FDRVLLDAPCS+ R A A S +R + Q+ + A Q ++PGG
Sbjct: 179 PEHFDRVLLDAPCSS---EARFHADNPASWQFWSPAKIREAARKQKPLLFSAWQSLKPGG 235
Query: 477 IIVYSTCTINPGENEALCA 495
+VY TC+ P ENEA+ A
Sbjct: 236 TMVYCTCSFAPEENEAMVA 254
>gi|419255052|ref|ZP_13797575.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC10A]
gi|378102094|gb|EHW63778.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC10A]
Length = 331
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 185 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 244
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 245 STCTLNQEENEAVC 258
Score = 45.1 bits (105), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 219 EGIAVDMHNR-IFQLPSFYDVLEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGK 275
EG ++ N L S + L G ++Q S++ AL D +R++D+ AAPG K
Sbjct: 72 EGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVMDVAAAPGSK 131
Query: 276 TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
TT IA+ + +EG ++A + S ++V + + G+ + D
Sbjct: 132 TTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFD 176
>gi|344915260|ref|NP_707285.3| nucleolar protein [Shigella flexneri 2a str. 301]
gi|24051702|gb|AAN42992.1| putative nucleolar protein [Shigella flexneri 2a str. 301]
Length = 406
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 411 LGGRAENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQA 468
GGR + P FD +LLDAPCS G+ + A + N QR + D A
Sbjct: 160 FGGRVFGAA--VPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSA 217
Query: 469 VQLVRPGGIIVYSTCTINPGENEALC 494
+RPGG +VYSTCT+N ENEA+C
Sbjct: 218 FHALRPGGTLVYSTCTLNREENEAVC 243
Score = 42.7 bits (99), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 219 EGIAVDMHNR-IFQLPSFYDVLEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGK 275
EG ++ N L S + L G ++Q S++ AL D +R++D+ AAPG K
Sbjct: 57 EGFWIERDNEDALPLGSTTEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSK 116
Query: 276 TTAIASLLRDEGEVVAVDRSHNKV 299
TT IA+ + +EG ++A + S + V
Sbjct: 117 TTQIAARMNNEGAILANEFSASWV 140
>gi|420372006|ref|ZP_14872351.1| ribosomal RNA small subunit methyltransferase F, partial [Shigella
flexneri 1235-66]
gi|391318684|gb|EIQ75787.1| ribosomal RNA small subunit methyltransferase F, partial [Shigella
flexneri 1235-66]
Length = 299
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 411 LGGRAENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQA 468
GGR + P FD +LLDAPCS G+ + A + N QR + D A
Sbjct: 154 FGGRVFGAA--VPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSA 211
Query: 469 VQLVRPGGIIVYSTCTINPGENEALC 494
+RPGG +VYSTCT+N ENEA+C
Sbjct: 212 FHALRPGGTLVYSTCTLNREENEAVC 237
Score = 42.7 bits (99), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 219 EGIAVDMHNR-IFQLPSFYDVLEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGK 275
EG ++ N L S + L G ++Q S++ AL D +R++D+ AAPG K
Sbjct: 51 EGFWIERDNEDALPLGSTTEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSK 110
Query: 276 TTAIASLLRDEGEVVAVDRSHNKV 299
TT IA+ + +EG ++A + S + V
Sbjct: 111 TTQIAARMNNEGAILANEFSASWV 134
>gi|433591369|ref|YP_007280865.1| NOL1/NOP2/sun family putative RNA methylase [Natrinema pellirubrum
DSM 15624]
gi|448332956|ref|ZP_21522175.1| RNA methylase, NOL1/NOP2/sun family protein [Natrinema pellirubrum
DSM 15624]
gi|433306149|gb|AGB31961.1| NOL1/NOP2/sun family putative RNA methylase [Natrinema pellirubrum
DSM 15624]
gi|445624492|gb|ELY77873.1| RNA methylase, NOL1/NOP2/sun family protein [Natrinema pellirubrum
DSM 15624]
Length = 302
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 63/127 (49%), Gaps = 16/127 (12%)
Query: 207 AMMSRAGIFRASEGIA---VDMHNRIFQL---------PSFYDVLEGEIFLQNLPSIVTA 254
A + RA +EG+A D + R+ L SF+ G+ + +P +V
Sbjct: 36 ASVDRALATLEAEGLAYEQADWNPRVLDLETDSPGSTWASFHGFTHGQEEVSAVPPVV-- 93
Query: 255 HALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCI 314
LDP+ GER+ D CAAPGGK T IA+L+ D G VVA D + ++ ++ A +G +
Sbjct: 94 --LDPEPGERVWDCCAAPGGKATQIAALMDDRGTVVANDNNLGRISALRFNAERLGATSL 151
Query: 315 TTYKLDA 321
DA
Sbjct: 152 AVTNADA 158
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 421 FSPNSFDRVLLDAPCSALG-LRPRLFAAEETIQS-LRNHGKYQRRMFDQAVQLVRPGGII 478
F + FDR L+DAPCS G +R A + + + + Q+ + +A+Q R GG +
Sbjct: 166 FDFDEFDRTLVDAPCSCEGTIRKNPDALDNWSEGHISSVAGIQKGIIRRAIQATREGGTV 225
Query: 479 VYSTCTINPGENEAL 493
VYSTCT P ENEA+
Sbjct: 226 VYSTCTFAPEENEAV 240
>gi|262202278|ref|YP_003273486.1| Fmu (Sun) domain-containing protein [Gordonia bronchialis DSM
43247]
gi|262085625|gb|ACY21593.1| Fmu (Sun) domain protein [Gordonia bronchialis DSM 43247]
Length = 460
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 63/128 (49%), Gaps = 8/128 (6%)
Query: 367 GLNGDKSCKEKVSNEKGVERTYVSKADTRKNMRR--MRNGPGRNQCLGGRAENSKGFSPN 424
G G + +++ G V ++ R + R +R+ P Q RA G P
Sbjct: 282 GPGGKAALLGALADINGAHVDAVEVSEHRAELIRKTVRDLPVHVQVADARA---AGLDPG 338
Query: 425 SFDRVLLDAPCSALGLRPRLFAAEETIQ--SLRNHGKYQRRMFDQAVQLVRPGGIIVYST 482
FDR+LLDAPCS LG R A Q + QR + +AV+LVRPGG++VYST
Sbjct: 339 -FDRILLDAPCSGLGSLRRRPEARWRRQPADVDELVVLQRELLTEAVRLVRPGGLVVYST 397
Query: 483 CTINPGEN 490
C+ +P E
Sbjct: 398 CSPHPAET 405
>gi|297288127|ref|XP_001110343.2| PREDICTED: putative methyltransferase NSUN5-like isoform 1 [Macaca
mulatta]
Length = 470
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 70/139 (50%), Gaps = 14/139 (10%)
Query: 194 YFERSGL-YIGQGTAMMSRAGIFRASEG---IAVDMHNRIFQLPSFYDVLE------GEI 243
YF+R G Y G+ +++ RA +G + + + P+ D+ E G +
Sbjct: 153 YFKRQGFSYQGRASSLDD----LRALKGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHL 208
Query: 244 FLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQ 303
LQ+ S + A L+P G ++D CAAPG KT+ +A+LL+++G++ A D ++ +
Sbjct: 209 ILQDRASCLPAMLLNPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMA 268
Query: 304 KLAAEMGLKCITTYKLDAL 322
L A G+ C + D L
Sbjct: 269 TLLARAGISCCELAEEDFL 287
>gi|448305486|ref|ZP_21495416.1| RNA methylase, NOL1/NOP2/sun family protein [Natronorubrum
sulfidifaciens JCM 14089]
gi|445588256|gb|ELY42500.1| RNA methylase, NOL1/NOP2/sun family protein [Natronorubrum
sulfidifaciens JCM 14089]
Length = 303
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 16/115 (13%)
Query: 219 EGIA---VDMHNRIFQLP---------SFYDVLEGEIFLQNLPSIVTAHALDPQKGERIL 266
EG+A D + R+ +L SF+ + G+ + +P +V LDPQ GER+
Sbjct: 48 EGVAYEQADWNPRVVRLETDSPGSTWTSFHGLTHGQEEVSAVPPVV----LDPQPGERVW 103
Query: 267 DMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
D CAAPGGK T +A+L+ D G VVA D + ++ ++ A +G + DA
Sbjct: 104 DSCAAPGGKATQLAALMDDRGTVVANDNNLGRISALRFNAERLGATSLAVTNADA 158
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 413 GRAENSKGFSPNSFDRVLLDAPCSALG-LRPRLFAAEETIQS-LRNHGKYQRRMFDQAVQ 470
R + K F + FDR L+DAPCS G +R A + + + + Q+ + +AVQ
Sbjct: 158 ARTYSLKRFPFDEFDRALVDAPCSCEGTIRKNPDALDNWNEGHISSVSGIQKGILRRAVQ 217
Query: 471 LVRPGGIIVYSTCTINPGENEAL 493
R GG +VYSTCT P ENEA+
Sbjct: 218 ATREGGTVVYSTCTFAPEENEAV 240
>gi|291527116|emb|CBK92702.1| ribosomal RNA small subunit methyltransferase RsmB [Eubacterium
rectale M104/1]
Length = 469
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 54/90 (60%), Gaps = 3/90 (3%)
Query: 232 LPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVA 291
L SF D G ++Q++ S++ A P+KG+ ++D+CAAPGGK+T IA LL+ G V+A
Sbjct: 257 LQSFRD---GLFYVQDISSMLVAQTAAPKKGDYVIDVCAAPGGKSTHIAELLKGSGHVLA 313
Query: 292 VDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
D + KV I++ GL ++ DA
Sbjct: 314 RDLTDTKVGMIEENIDRHGLNNMSAEVWDA 343
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 427 DRVLLDAPCSALGL--RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCT 484
D ++ D PCS LG+ R + + T +S+ QR++ D V+P G++VYSTCT
Sbjct: 355 DILICDLPCSGLGVLGRKKDIRYKMTPESVDELAALQRQILDTVHTYVKPNGVLVYSTCT 414
Query: 485 INPGENE 491
I+ ENE
Sbjct: 415 IDEAENE 421
>gi|422413366|ref|ZP_16490325.1| ribosomal RNA small subunit methyltransferase B [Listeria innocua
FSL S4-378]
gi|313618293|gb|EFR90347.1| ribosomal RNA small subunit methyltransferase B [Listeria innocua
FSL S4-378]
Length = 446
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 55/108 (50%), Gaps = 10/108 (9%)
Query: 396 KNMRRMRNGPGRNQCLGGRAEN------SKGFSPNSFDRVLLDAPCSALGL---RPRLFA 446
K + + R Q L R + S F +FDR+L+DAPCS G+ +P +
Sbjct: 286 KKTKLIDQAAKRLQLLNIRTAHLDARTASTMFESETFDRILVDAPCSGFGVLRRKPDIKY 345
Query: 447 AEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEALC 494
A+ T + + + Q + D QLV+ GI+VYSTCTI+ ENE +
Sbjct: 346 AK-TEKDIHKLAEIQLAILDDVSQLVKENGILVYSTCTIDKEENETVL 392
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 45/82 (54%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
+G+ +Q+ S++ A+AL + +LD CAAPGGKTT IA + G V A+D K
Sbjct: 229 DGKCSIQDESSMLVAYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKT 288
Query: 300 MDIQKLAAEMGLKCITTYKLDA 321
I + A + L I T LDA
Sbjct: 289 KLIDQAAKRLQLLNIRTAHLDA 310
>gi|331673368|ref|ZP_08374136.1| ribosomal RNA small subunit methyltransferase F
(rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA
m5C1407methyltransferase) [Escherichia coli TA280]
gi|331069566|gb|EGI40953.1| ribosomal RNA small subunit methyltransferase F
(rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA
m5C1407methyltransferase) [Escherichia coli TA280]
Length = 481
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 187 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 246
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 247 STCTLNQEENEAVC 260
Score = 45.1 bits (105), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 239 LEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296
L G ++Q S++ AL D +R++D+ AAPG KTT IA+ + +EG ++A + S
Sbjct: 95 LSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGAILANEFSA 154
Query: 297 NKVMDIQKLAAEMGLKCITTYKLD 320
++V + + G++ + D
Sbjct: 155 SRVKVLHANISRCGIRNVALTHFD 178
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.316 0.133 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,691,873,859
Number of Sequences: 23463169
Number of extensions: 318617576
Number of successful extensions: 885330
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 5987
Number of HSP's successfully gapped in prelim test: 1788
Number of HSP's that attempted gapping in prelim test: 862652
Number of HSP's gapped (non-prelim): 17267
length of query: 495
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 348
effective length of database: 8,910,109,524
effective search space: 3100718114352
effective search space used: 3100718114352
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 79 (35.0 bits)