BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011036
(495 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YXL|A Chain A, Crystal Structure Of Ph0851
Length = 450
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 52/85 (61%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
EG+I +Q S V + LDP+ GE ++D+ AAPGGKTT +A L++++G++ A D ++
Sbjct: 238 EGKIIVQEEASAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRM 297
Query: 300 MDIQKLAAEMGLKCITTYKLDALKA 324
++ MG+K + DA KA
Sbjct: 298 KRLKDFVKRMGIKIVKPLVKDARKA 322
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 12/72 (16%)
Query: 427 DRVLLDAPCSALG-------LRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIV 479
D+VLLDAPC++ G LR RL E+ I + + QR + + A +LV+PGG ++
Sbjct: 332 DKVLLDAPCTSSGTIGKNPELRWRL--REDKINEM---SQLQRELLESAARLVKPGGRLL 386
Query: 480 YSTCTINPGENE 491
Y+TC+I ENE
Sbjct: 387 YTTCSIFKEENE 398
>pdb|2B9E|A Chain A, Human Nsun5 Protein
Length = 309
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 68/136 (50%), Gaps = 8/136 (5%)
Query: 194 YFERSGL-YIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVLE------GEIFLQ 246
YF+R G Y G+ +++ + + + + + P+ D+ E G + LQ
Sbjct: 29 YFKRQGFSYQGRASSLDDLRAL-KGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHLILQ 87
Query: 247 NLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLA 306
+ S + A LDP G ++D CAAPG KT+ +A+LL+++G++ A D ++ + L
Sbjct: 88 DRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLL 147
Query: 307 AEMGLKCITTYKLDAL 322
A G+ C + D L
Sbjct: 148 ARAGVSCCELAEEDFL 163
>pdb|2FRX|A Chain A, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
pdb|2FRX|B Chain B, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
pdb|2FRX|C Chain C, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
pdb|2FRX|D Chain D, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
Length = 479
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 185 PEXFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 244
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 245 STCTLNQEENEAVC 258
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Query: 219 EGIAVDMHNR-IFQLPSFYDVLEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGK 275
EG ++ N L S + L G ++Q S + AL D +R+ D+ AAPG K
Sbjct: 72 EGFWIERDNEDALPLGSTAEHLSGLFYIQEASSXLPVAALFADGNAPQRVXDVAAAPGSK 131
Query: 276 TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
TT I++ +EG ++A + S ++V + + G+ + D
Sbjct: 132 TTQISARXNNEGAILANEFSASRVKVLHANISRCGISNVALTHFD 176
>pdb|3A4T|A Chain A, Crystal Structure Of Atrm4 From M.Jannaschii With
Sinefungin
pdb|3A4T|B Chain B, Crystal Structure Of Atrm4 From M.Jannaschii With
Sinefungin
pdb|3AJD|A Chain A, Crystal Structure Of Atrm4
Length = 274
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 54/90 (60%)
Query: 222 AVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIAS 281
A ++ F + S + L G Q++ S++ L+P++ + ILDMCAAPGGKTT +A
Sbjct: 44 AFEVKKSPFSIGSTPEYLFGYYMPQSISSMIPPIVLNPREDDFILDMCAAPGGKTTHLAQ 103
Query: 282 LLRDEGEVVAVDRSHNKVMDIQKLAAEMGL 311
L++++G +VAV+ S + ++ MG+
Sbjct: 104 LMKNKGTIVAVEISKTRTKALKSNINRMGV 133
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 8/71 (11%)
Query: 426 FDRVLLDAPCSALGLRPR-LFAAEETIQ--SLRNHGKYQRRMFDQAVQLVRPGGIIVYST 482
FD++LLDAPCS ++ + +EE I+ SLR Q+ + D + L++ G +VYST
Sbjct: 157 FDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLR-----QKELIDIGIDLLKKDGELVYST 211
Query: 483 CTINPGENEAL 493
C++ ENE +
Sbjct: 212 CSMEVEENEEV 222
>pdb|3M6W|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P21212 In Complex
With S-Adenosyl-L- Methionine
Length = 464
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 426 FDRVLLDAPCSALGL--RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTC 483
F RVLLDAPCS G+ + R A + + + Q+ + QA +L+ PGG++VYSTC
Sbjct: 171 FHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTC 230
Query: 484 TINPGENEALCA 495
T P ENE + A
Sbjct: 231 TFAPEENEGVVA 242
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 219 EGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTA 278
EG R P FY G ++Q + LDP+ GER+LD+ AAPGGKTT
Sbjct: 62 EGFYYPEEARPGPHPFFYA---GLYYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTH 118
Query: 279 IASLLRDEGEVVAVDRSHNKVMDI 302
+A+ + +G ++A + +V +
Sbjct: 119 LAARMGGKGLLLANEVDGKRVRGL 142
>pdb|3M6U|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group 43
pdb|3M6U|B Chain B, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group 43
pdb|3M6V|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P2 In Complex With
S-Adenosyl-L- Methionine
pdb|3M6V|B Chain B, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P2 In Complex With
S-Adenosyl-L- Methionine
Length = 464
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 426 FDRVLLDAPCSALGL--RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTC 483
F RVLLDAPCS G+ + R A + + + Q+ + QA +L+ PGG++VYSTC
Sbjct: 171 FHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTC 230
Query: 484 TINPGENEALCA 495
T P ENE + A
Sbjct: 231 TFAPEENEGVVA 242
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 219 EGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTA 278
EG R P FY G ++Q + LDP+ GER+LD+ AAPGGKTT
Sbjct: 62 EGFYYPEEARPGPHPFFYA---GLYYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTH 118
Query: 279 IASLLRDEGEVVAVDRSHNKVMDI 302
+A+ + +G ++A + +V +
Sbjct: 119 LAARMGGKGLLLANEVDGKRVRGL 142
>pdb|3M6X|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P21212
Length = 464
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 426 FDRVLLDAPCSALGL--RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTC 483
F RVLLDAPCS G + R A + + + Q+ + QA +L+ PGG++VYSTC
Sbjct: 171 FHRVLLDAPCSGEGXFRKDREAARHWGPSAPKRXAEVQKALLAQASRLLGPGGVLVYSTC 230
Query: 484 TINPGENEALCA 495
T P ENE + A
Sbjct: 231 TFAPEENEGVVA 242
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 219 EGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTA 278
EG R P FY G ++Q + LDP+ GER+LD+ AAPGGKTT
Sbjct: 62 EGFYYPEEARPGPHPFFYA---GLYYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTH 118
Query: 279 IASLLRDEGEVVAVDRSHNKVMDI 302
+A+ +G ++A + +V +
Sbjct: 119 LAARXGGKGLLLANEVDGKRVRGL 142
>pdb|1IXK|A Chain A, Crystal Structure Analysis Of Methyltransferase Homolog
Protein From Pyrococcus Horikoshii
Length = 315
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 51/93 (54%)
Query: 230 FQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEV 289
F + S + L G I++Q S ALDP+ GE + D AAPGGKT+ +A L R++G +
Sbjct: 87 FSITSTPEFLTGLIYIQEASSXYPPVALDPKPGEIVADXAAAPGGKTSYLAQLXRNDGVI 146
Query: 290 VAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322
A D N++ + + + +G+ + + +L
Sbjct: 147 YAFDVDENRLRETRLNLSRLGVLNVILFHSSSL 179
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 426 FDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYST 482
FD++LLDAPC+ G P T ++ Q R+ ++ +++++PGGI+VYST
Sbjct: 188 FDKILLDAPCTGSGTIHKNPER-KWNRTXDDIKFCQGLQXRLLEKGLEVLKPGGILVYST 246
Query: 483 CTINPGENE 491
C++ P ENE
Sbjct: 247 CSLEPEENE 255
>pdb|1SQF|A Chain A, The Crystal Structure Of E. Coli Fmu Binary Complex With
S- Adenosylmethionine At 2.1 A Resolution
pdb|1SQG|A Chain A, The Crystal Structure Of The E. Coli Fmu Apoenzyme At 1.65
A Resolution
Length = 429
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
+ LP F D G + +Q+ + L PQ GE ILD+CAAPGGKTT I + E +
Sbjct: 217 VHALPGFED---GWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILE-VAPEAQ 272
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKC 313
VVAVD ++ + +G+K
Sbjct: 273 VVAVDIDEQRLSRVYDNLKRLGMKA 297
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 10/73 (13%)
Query: 424 NSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH------GKYQRRMFDQAVQLVRPGGI 477
FDR+LLDAPCSA G+ R I+ LR + Q + D ++ GG
Sbjct: 314 QQFDRILLDAPCSATGVIRR----HPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGT 369
Query: 478 IVYSTCTINPGEN 490
+VY+TC++ P EN
Sbjct: 370 LVYATCSVLPEEN 382
>pdb|3M4X|A Chain A, Structure Of A Ribosomal Methyltransferase
Length = 456
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 426 FDRVLLDAPCSALG-LRPRLFAAEE-TIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTC 483
FDR+++DAPCS G R A +E T +S K Q+ + A++ ++ G ++YSTC
Sbjct: 176 FDRIVVDAPCSGEGXFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKXLKNKGQLIYSTC 235
Query: 484 TINPGENEALCA 495
T P ENE + +
Sbjct: 236 TFAPEENEEIIS 247
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 28/38 (73%), Gaps = 2/38 (5%)
Query: 253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVV 290
TA A P GE++LD+CAAPGGK+T +A+ + +G +V
Sbjct: 99 TAAAAKP--GEKVLDLCAAPGGKSTQLAAQXKGKGLLV 134
>pdb|4FZV|A Chain A, Crystal Structure Of The Human Mterf4:nsun4:sam Ternary
Complex
Length = 359
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 5/66 (7%)
Query: 242 EIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAI--ASLLRDEGEVVAVDRSHNKV 299
E +L + S++ AL Q G+ +LD+CAAPGGKT A+ R+ + A D S +++
Sbjct: 129 EYYLXDAASLLPVLALGLQPGDIVLDLCAAPGGKTLALLQTGCCRN---LAANDLSPSRI 185
Query: 300 MDIQKL 305
+QK+
Sbjct: 186 ARLQKI 191
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 12/76 (15%)
Query: 424 NSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFD-QAVQLV-------RPG 475
+++DRVL+D PC+ R EE + K +R++ VQL+ +PG
Sbjct: 222 DTYDRVLVDVPCTT----DRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPG 277
Query: 476 GIIVYSTCTINPGENE 491
G +VYSTC+++ +NE
Sbjct: 278 GHVVYSTCSLSHLQNE 293
>pdb|4FP9|A Chain A, Human Mterf4-Nsun4 Protein Complex
pdb|4FP9|C Chain C, Human Mterf4-Nsun4 Protein Complex
pdb|4FP9|D Chain D, Human Mterf4-Nsun4 Protein Complex
pdb|4FP9|F Chain F, Human Mterf4-Nsun4 Protein Complex
Length = 360
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 5/66 (7%)
Query: 242 EIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAI--ASLLRDEGEVVAVDRSHNKV 299
E +L + S++ AL Q G+ +LD+CAAPGGKT A+ R+ + A D S +++
Sbjct: 130 EYYLMDAASLLPVLALGLQPGDIVLDLCAAPGGKTLALLQTGCCRN---LAANDLSPSRI 186
Query: 300 MDIQKL 305
+QK+
Sbjct: 187 ARLQKI 192
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 12/76 (15%)
Query: 424 NSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFD-QAVQLV-------RPG 475
+++DRVL+D PC+ R EE + K +R++ VQL+ +PG
Sbjct: 223 DTYDRVLVDVPCTT----DRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPG 278
Query: 476 GIIVYSTCTINPGENE 491
G +VYSTC+++ +NE
Sbjct: 279 GHVVYSTCSLSHLQNE 294
>pdb|2B3T|A Chain A, Molecular Basis For Bacterial Class 1 Release Factor
Methylation By Prmc
Length = 276
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYK 318
P++ RILD+ G A+AS R + E++AVDR + V Q+ A + +K I +
Sbjct: 107 PEQPCRILDLGTGTGAIALALASE-RPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQ 165
Query: 319 LDALKAV 325
D A+
Sbjct: 166 SDWFSAL 172
>pdb|1T43|A Chain A, Crystal Structure Analysis Of E.Coli Protein
(N5)-Glutamine Methyltransferase (Hemk)
Length = 277
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYK 318
P++ RILD+ G A+AS R + E++AVDR + V Q+ A + +K I +
Sbjct: 107 PEQPCRILDLGTGTGAIALALASE-RPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQ 165
Query: 319 LDALKAV 325
D A+
Sbjct: 166 SDWFSAL 172
>pdb|2AUS|C Chain C, Crystal Structure Of The Archaeal Box HACA SRNP NOP10-Cbf5
Complex
pdb|2AUS|A Chain A, Crystal Structure Of The Archaeal Box HACA SRNP NOP10-Cbf5
Complex
Length = 334
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 46/112 (41%), Gaps = 33/112 (29%)
Query: 125 EVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTV 184
++ + AV GA + VPG++ ++ ++KGD+VA+ ++
Sbjct: 252 KIWIKDSAVAAVAHGANLTVPGIVKLNAGIKKGDLVAIMTLKDE---------------- 295
Query: 185 LQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFY 236
+ G AMMS + S+GIAVD+ ++F +Y
Sbjct: 296 ----------------LVALGKAMMSTQEMIERSKGIAVDV-EKVFMPRDWY 330
>pdb|1KK9|A Chain A, Crystal Structure Of E. Coli Ycio
Length = 221
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 19/22 (86%)
Query: 461 QRRMFDQAVQLVRPGGIIVYST 482
Q+R+ +QAV++VR GG+IVY T
Sbjct: 28 QQRLINQAVEIVRKGGVIVYPT 49
>pdb|1K7J|A Chain A, Structural Genomics, Protein Tf1
Length = 206
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 19/22 (86%)
Query: 461 QRRMFDQAVQLVRPGGIIVYST 482
Q+R+ +QAV++VR GG+IVY T
Sbjct: 13 QQRLINQAVEIVRKGGVIVYPT 34
>pdb|2APO|A Chain A, Crystal Structure Of The Methanococcus Jannaschii Cbf5
Nop10 Complex
Length = 357
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 43/107 (40%), Gaps = 33/107 (30%)
Query: 124 KEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGT 183
K+V+V +A+ GA VYV G+ S + KG+ V V
Sbjct: 270 KKVVVKDSAVDAICHGADVYVRGIAKLSKGIGKGETVLVE-------------------- 309
Query: 184 VLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIF 230
L+G + G A+M+ I A +G+AVD+ R++
Sbjct: 310 TLKGEA------------VAVGKALMNTKEILNADKGVAVDV-ERVY 343
>pdb|1ZS7|A Chain A, The Structure Of Gene Product Ape0525 From Aeropyrum
Pernix
Length = 190
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 126 VIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVA 161
V+V + A A+ +GA + +PGV+ +GDVVA
Sbjct: 96 VLVDKGAAIALAKGAHLXIPGVVGVEGSFTRGDVVA 131
>pdb|3LWO|A Chain A, Structure Of HACA RNP BOUND TO A SUBSTRATE RNA CONTAINING
5BRU
pdb|3LWP|A Chain A, Structure Of HACA RNP BOUND TO A SUBSTRATE RNA CONTAINING
5BRDU
pdb|3LWQ|A Chain A, Structure Of HACA RNP BOUND TO A SUBSTRATE RNA CONTAINING
3MU
pdb|3LWR|A Chain A, Structure Of HACA RNP BOUND TO A SUBSTRATE RNA CONTAINING
4SU
pdb|3LWV|A Chain A, Structure Of HACA RNP BOUND TO A SUBSTRATE RNA CONTAINING
2'- Deoxyuridine
Length = 340
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 33/112 (29%)
Query: 125 EVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTV 184
+V + AV GA + VPG+ + +++GD+VA+ ++
Sbjct: 252 KVWIKDSAVAAVTHGADLAVPGIAKLHAGIKRGDLVAIMTLKDE---------------- 295
Query: 185 LQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFY 236
+ G AMM+ + ++GIAVD+ ++F +Y
Sbjct: 296 ----------------LVALGKAMMTSQEMLEKTKGIAVDV-EKVFMPRDWY 330
>pdb|2HVY|A Chain A, Crystal Structure Of An HACA BOX RNP FROM PYROCOCCUS
FURIOSUS
pdb|3HAX|A Chain A, Crystal Structure Of A Substrate-Bound Gar1-Minus HACA RNP
FROM Pyrococcus Furiosus
pdb|3HAY|A Chain A, Crystal Structure Of A Substrate-Bound Full HACA RNP FROM
Pyrococcus Furiosus
Length = 346
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 33/112 (29%)
Query: 125 EVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTV 184
+V + AV GA + VPG+ + +++GD+VA+ ++
Sbjct: 252 KVWIKDSAVAAVTHGADLAVPGIAKLHAGIKRGDLVAIMTLKDE---------------- 295
Query: 185 LQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFY 236
+ G AMM+ + ++GIAVD+ ++F +Y
Sbjct: 296 ----------------LVALGKAMMTSQEMLEKTKGIAVDV-EKVFMPRDWY 330
>pdb|2CX0|A Chain A, Crystal Structure Of A Pua Domain (ape0525) From The
Aeropyrum Pernix K1 (sulfate Complex)
pdb|2CX1|A Chain A, Crystal Structure Of A Pua Domain (ape0525) From The
Aeropyrum Pernix K1 (tartrate Complex)
Length = 187
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 126 VIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVA 161
V+V + A A+ +GA + +PGV+ +GDVVA
Sbjct: 95 VLVDKGAAIALAKGAHLXIPGVVGVEGSFTRGDVVA 130
>pdb|3MQK|A Chain A, Cbf5-Nop10-Gar1 Complex Binding With 17mer Rna Containing
Aca Trinucleotide
Length = 328
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 33/112 (29%)
Query: 125 EVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTV 184
+V + AV GA + VPG+ + +++GD+VA+ ++
Sbjct: 245 KVWIKDSAVAAVTHGADLAVPGIAKLHAGIKRGDLVAIMTLKDE---------------- 288
Query: 185 LQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFY 236
+ G AMM+ + ++GIAVD+ ++F +Y
Sbjct: 289 ----------------LVALGKAMMTSQEMLEKTKGIAVDV-EKVFMPRDWY 323
>pdb|2RFK|A Chain A, Substrate Rna Positioning In The Archaeal HACA
Ribonucleoprotein Complex
Length = 334
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 33/112 (29%)
Query: 125 EVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTV 184
+V + AV GA + VPG+ + +++GD+VA+ ++
Sbjct: 248 KVWIKDSAVAAVTHGADLAVPGIAKLHAGIKRGDLVAIMTLKDE---------------- 291
Query: 185 LQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFY 236
+ G AMM+ + ++GIAVD+ ++F +Y
Sbjct: 292 ----------------LVALGKAMMTSQEMLEKTKGIAVDV-EKVFMPRDWY 326
>pdb|3HJW|A Chain A, Structure Of A Functional Ribonucleoprotein Pseudouridine
Synthase Bound To A Substrate Rna
pdb|3HJY|A Chain A, Structure Of A Functional Ribonucleoprotein Pseudouridine
Synthase Bound To A Substrate Rna
Length = 327
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 33/112 (29%)
Query: 125 EVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTV 184
+V + AV GA + VPG+ + +++GD+VA+ ++
Sbjct: 245 KVWIKDSAVAAVTHGADLAVPGIAKLHAGIKRGDLVAIMTLKDE---------------- 288
Query: 185 LQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFY 236
+ G AMM+ + ++GIAVD+ ++F +Y
Sbjct: 289 ----------------LVALGKAMMTSQEMLEKTKGIAVDV-EKVFMPRDWY 323
>pdb|3D79|A Chain A, Crystal Structure Of Hypothetical Protein Ph0734.1 From
Hyperthermophilic Archaea Pyrococcus Horikoshii Ot3
Length = 179
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 121 KPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAV 162
K P+ V+V +L GA V PG++ +++GD V V
Sbjct: 92 KWPRRVVVDEGAVPHILNGADVMAPGIVDADEGIKEGDFVFV 133
>pdb|2EY4|A Chain A, Crystal Structure Of A Cbf5-Nop10-Gar1 Complex
pdb|2EY4|B Chain B, Crystal Structure Of A Cbf5-Nop10-Gar1 Complex
Length = 333
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 33/112 (29%)
Query: 125 EVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTV 184
+V + AV GA + VPG+ + +++GD+VA+ ++
Sbjct: 252 KVWIKDSAVAAVTHGADLAVPGIAKLHAGIKRGDLVAIMTLKDE---------------- 295
Query: 185 LQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFY 236
+ G AMM+ + ++GIAVD+ ++F +Y
Sbjct: 296 ----------------LVALGKAMMTSQEMLEKTKGIAVDV-EKVFMPRDWY 330
>pdb|4EMY|A Chain A, Crystal Structure Of Aminotransferase From Anaerococcus
Prevotii Dsm 20548.
pdb|4EMY|B Chain B, Crystal Structure Of Aminotransferase From Anaerococcus
Prevotii Dsm 20548.
pdb|4EMY|C Chain C, Crystal Structure Of Aminotransferase From Anaerococcus
Prevotii Dsm 20548.
pdb|4EMY|D Chain D, Crystal Structure Of Aminotransferase From Anaerococcus
Prevotii Dsm 20548
Length = 413
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 39/95 (41%), Gaps = 21/95 (22%)
Query: 211 RAGIFRASEGIAVDMHNRIFQLPSFYDVL--------------EGEIFLQNLPSIVTAHA 256
R + A+ G +D +I LPS YD L EGE ++ IV
Sbjct: 36 REAVINAALGTLLDDKGKIIALPSVYDRLDEXDRSHIASYAPIEGE---KDYRKIVIDTL 92
Query: 257 LDPQKGERILDMCAAPGGK---TTAIASLLRDEGE 288
P K E + A PGG +AI S L DEG+
Sbjct: 93 FGPYKPEGYISAIATPGGTGAIRSAIFSYL-DEGD 126
>pdb|1WXW|A Chain A, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXW|B Chain B, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXW|C Chain C, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXW|D Chain D, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXX|A Chain A, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXX|B Chain B, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXX|C Chain C, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXX|D Chain D, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
Length = 382
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
+GER LD+ + GG +A R EVVAVD S + ++ A GL + + +
Sbjct: 209 RGERALDVFSYAGGFALHLALGFR---EVVAVDSSAEALRRAEENARLNGLGNVRVLEAN 265
Query: 321 ALKAVRRKNESNDEPNMC 338
A +RR + + ++
Sbjct: 266 AFDLLRRLEKEGERFDLV 283
>pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x
Length = 417
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
Query: 231 QLPSFYDVLEGEIFLQNL-------PSIVTAHALDPQKGERILDMCAAPG-GKTTAI 279
+ SF DV GEI + N+ P+ V HA+ K +R L CA G GKT A
Sbjct: 13 HIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAF 69
>pdb|2CWW|A Chain A, Crystal Structure Of Thermus Thermophilus Ttha1280, A
Putative Sam- Dependent Rna Methyltransferase, In
Complex With S-Adenosyl-L- Homocysteine
pdb|2CWW|B Chain B, Crystal Structure Of Thermus Thermophilus Ttha1280, A
Putative Sam- Dependent Rna Methyltransferase, In
Complex With S-Adenosyl-L- Homocysteine
Length = 382
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
+GER LD+ + GG +A R EVVAVD S + ++ A GL + + +
Sbjct: 209 RGERALDVFSYAGGFALHLALGFR---EVVAVDSSAEALRRAEENARLNGLGNVRVLEAN 265
Query: 321 ALKAVRRKNESNDEPNMC 338
A +RR + + ++
Sbjct: 266 AFDLLRRLEKEGERFDLV 283
>pdb|1Q5Z|A Chain A, Crystal Structure Of The C-Terminal Actin Binding Domain
Of Salmonella Invasion Protein A (Sipa)
Length = 177
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 431 LDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
L A CS + P L A ET++ + H + ++ + A+Q R G+
Sbjct: 93 LKAQCSDIDKHPELKAKMETLKEVITHHPQKEKLAEIALQFAREAGL 139
>pdb|2JM3|A Chain A, Solution Structure Of The Thap Domain From C. Elegans C-
Terminal Binding Protein (Ctbp)
Length = 91
Score = 29.6 bits (65), Expect = 4.5, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 26/51 (50%)
Query: 122 PPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLD 172
P + +I+ ++ A+ R + V + CS+H E G+ + V PT+D
Sbjct: 31 PKRPLILRQRWLTAIGRTEETVVSQLRICSAHFEGGEKKEGDIPVPDPTVD 81
>pdb|2E5V|A Chain A, Crystal Structure Of L-Aspartate Oxidase From
Hyperthermophilic Archaeon Sulfolobus Tokodaii
pdb|2E5V|B Chain B, Crystal Structure Of L-Aspartate Oxidase From
Hyperthermophilic Archaeon Sulfolobus Tokodaii
Length = 472
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 3/110 (2%)
Query: 238 VLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHN 297
+LEG +F NLP V + + I+ G KT ++ + R E V + R+
Sbjct: 354 LLEGLVFGINLPRYVDSSWEGISTDDGIVHSVRISGNKTLSLKEIRRINWENVGIIRNEE 413
Query: 298 KVMD-IQKLAAEMGLKCITTYKLDALKA-VRRKNESNDEPNMCNSKDNNY 345
K++ I ++ + I +Y L AL A +R+++ N KD N+
Sbjct: 414 KLVKAINTYSSSTQNEAIISY-LTALAAEIRKESRGNHFREDYPYKDPNW 462
>pdb|1MWK|A Chain A, Parm From Plasmid R1 Apo Form
pdb|1MWK|B Chain B, Parm From Plasmid R1 Apo Form
pdb|1MWM|A Chain A, Parm From Plasmid R1 Adp Form
pdb|1MWM|B Chain B, Parm From Plasmid R1 Adp Form
pdb|2QU4|A Chain A, Model For Bacterial Parm Filament
pdb|2ZGY|A Chain A, Parm With Gdp
pdb|2ZGY|B Chain B, Parm With Gdp
pdb|2ZGZ|A Chain A, Parm With Gmppnp
pdb|2ZGZ|B Chain B, Parm With Gmppnp
pdb|2ZHC|A Chain A, Parm Filament
pdb|3IKU|A Chain A, Structural Model Of Parm Filament In Closed State From
Cryo- Em
pdb|3IKU|B Chain B, Structural Model Of Parm Filament In Closed State From
Cryo- Em
pdb|3IKU|C Chain C, Structural Model Of Parm Filament In Closed State From
Cryo- Em
pdb|3IKU|D Chain D, Structural Model Of Parm Filament In Closed State From
Cryo- Em
pdb|3IKU|E Chain E, Structural Model Of Parm Filament In Closed State From
Cryo- Em
pdb|3IKU|F Chain F, Structural Model Of Parm Filament In Closed State From
Cryo- Em
pdb|3IKU|G Chain G, Structural Model Of Parm Filament In Closed State From
Cryo- Em
pdb|3IKU|H Chain H, Structural Model Of Parm Filament In Closed State From
Cryo- Em
pdb|3IKU|I Chain I, Structural Model Of Parm Filament In Closed State From
Cryo- Em
pdb|3IKU|J Chain J, Structural Model Of Parm Filament In Closed State From
Cryo- Em
pdb|3IKU|K Chain K, Structural Model Of Parm Filament In Closed State From
Cryo- Em
pdb|3IKU|L Chain L, Structural Model Of Parm Filament In Closed State From
Cryo- Em
pdb|3IKY|A Chain A, Structural Model Of Parm Filament In The Open State By
Cryo- Em
pdb|3IKY|B Chain B, Structural Model Of Parm Filament In The Open State By
Cryo- Em
pdb|3IKY|C Chain C, Structural Model Of Parm Filament In The Open State By
Cryo- Em
pdb|3IKY|D Chain D, Structural Model Of Parm Filament In The Open State By
Cryo- Em
pdb|3IKY|E Chain E, Structural Model Of Parm Filament In The Open State By
Cryo- Em
pdb|3IKY|F Chain F, Structural Model Of Parm Filament In The Open State By
Cryo- Em
pdb|3IKY|G Chain G, Structural Model Of Parm Filament In The Open State By
Cryo- Em
pdb|3IKY|H Chain H, Structural Model Of Parm Filament In The Open State By
Cryo- Em
pdb|3IKY|I Chain I, Structural Model Of Parm Filament In The Open State By
Cryo- Em
pdb|3IKY|J Chain J, Structural Model Of Parm Filament In The Open State By
Cryo- Em
pdb|3IKY|K Chain K, Structural Model Of Parm Filament In The Open State By
Cryo- Em
pdb|3IKY|L Chain L, Structural Model Of Parm Filament In The Open State By
Cryo- Em
pdb|4A6J|A Chain A, Structural Model Of Parm Filament Based On Cryoem Map
pdb|4A6J|B Chain B, Structural Model Of Parm Filament Based On Cryoem Map
pdb|4A6J|C Chain C, Structural Model Of Parm Filament Based On Cryoem Map
pdb|4A6J|D Chain D, Structural Model Of Parm Filament Based On Cryoem Map
pdb|4A6J|E Chain E, Structural Model Of Parm Filament Based On Cryoem Map
pdb|4A6J|F Chain F, Structural Model Of Parm Filament Based On Cryoem Map
pdb|4A6J|G Chain G, Structural Model Of Parm Filament Based On Cryoem Map
pdb|4A6J|H Chain H, Structural Model Of Parm Filament Based On Cryoem Map
pdb|4A6J|I Chain I, Structural Model Of Parm Filament Based On Cryoem Map
pdb|4A6J|J Chain J, Structural Model Of Parm Filament Based On Cryoem Map
Length = 320
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 287 GEVVAVDRSHNKVMDIQKLAAE--MGLKCITTYKLDALKAVRRKNESNDEPNMC-NSKDN 343
G + + + K+ I K+ + +G+ +T+ DAL R K S ++ + KDN
Sbjct: 173 GTTLDISQVMGKLSGISKIYGDSSLGVSLVTSAVKDALSLARTKGSSYLADDIIIHRKDN 232
Query: 344 NYITSQTSDSMKLHKEVPSIAAEGLN 369
NY+ + +D K+ SI E +N
Sbjct: 233 NYLKQRINDENKI-----SIVTEAMN 253
>pdb|4A62|A Chain A, Parm From R1 Plasmid In Complex With Peptide From C-
Terminus Of Parr
pdb|4A62|B Chain B, Parm From R1 Plasmid In Complex With Peptide From C-
Terminus Of Parr
Length = 320
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 287 GEVVAVDRSHNKVMDIQKLAAE--MGLKCITTYKLDALKAVRRKNESNDEPNMC-NSKDN 343
G + + + K+ I K+ + +G+ +T+ DAL R K S ++ + KDN
Sbjct: 173 GTTLDISQVMGKLSGISKIYGDSSLGVSLVTSAVKDALSLARTKGSSYLADDIIIHRKDN 232
Query: 344 NYITSQTSDSMKLHKEVPSIAAEGLN 369
NY+ + +D K+ SI E +N
Sbjct: 233 NYLKQRINDENKI-----SIVTEAMN 253
>pdb|4A61|A Chain A, Parm From Plasmid R1 In Complex With Amppnp
Length = 326
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 287 GEVVAVDRSHNKVMDIQKLAAE--MGLKCITTYKLDALKAVRRKNESNDEPNMC-NSKDN 343
G + + + K+ I K+ + +G+ +T+ DAL R K S ++ + KDN
Sbjct: 179 GTTLDISQVMGKLSGISKIYGDSSLGVSLVTSAVKDALSLARTKGSSYLADDIIIHRKDN 238
Query: 344 NYITSQTSDSMKLHKEVPSIAAEGLN 369
NY+ + +D K+ SI E +N
Sbjct: 239 NYLKQRINDENKI-----SIVTEAMN 259
>pdb|2HG4|A Chain A, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|B Chain B, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|C Chain C, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|D Chain D, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|E Chain E, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|F Chain F, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs
Length = 917
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 10/55 (18%)
Query: 108 SGPHTIDYGYEPDKPPKEVI--VSRKCAEAVLRGAQVYVPGV--------MACSS 152
+G T+DYG PD+ P EV+ V A +V G Y G+ ACSS
Sbjct: 147 TGVGTVDYGPRPDEAPDEVLGYVGTGTASSVASGRVAYCLGLEGPAXTVDTACSS 201
>pdb|2ZGI|A Chain A, Crystal Structure Of Putative 4-Amino-4-Deoxychorismate
Lyase
pdb|2ZGI|B Chain B, Crystal Structure Of Putative 4-Amino-4-Deoxychorismate
Lyase
pdb|2ZGI|C Chain C, Crystal Structure Of Putative 4-Amino-4-Deoxychorismate
Lyase
pdb|2ZGI|D Chain D, Crystal Structure Of Putative 4-Amino-4-Deoxychorismate
Lyase
Length = 246
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 152 SHVEKGDVVAVSVAVEQPTLDGGW-GLGI-TRGTVLQGSQTDPYYFERSGLYIGQ-GTAM 208
+ + G+ + +A+E+ +G + GL + G V+ GS+T P F LY+ + G
Sbjct: 123 ARYKTGNYLPYRLALEEARKEGAFEGLLLDAFGHVVDGSRTSPLLFREGTLYLLEGGLEG 182
Query: 209 MSRAGIFRASEGIAVDMHNRIFQ 231
++R + A+ G+ + + +F+
Sbjct: 183 ITREKVAEAARGLGLRVERGLFR 205
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,121,011
Number of Sequences: 62578
Number of extensions: 552234
Number of successful extensions: 1462
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1393
Number of HSP's gapped (non-prelim): 72
length of query: 495
length of database: 14,973,337
effective HSP length: 103
effective length of query: 392
effective length of database: 8,527,803
effective search space: 3342898776
effective search space used: 3342898776
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)