BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011036
(495 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7TS68|NSUN6_MOUSE Putative methyltransferase NSUN6 OS=Mus musculus GN=Nsun6 PE=2 SV=2
Length = 476
Score = 167 bits (422), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 110/332 (33%), Positives = 166/332 (50%), Gaps = 53/332 (15%)
Query: 11 PLLRWNPQVEEYFIRAY-------------GADHFSRISKALTRPSCYSCIRVNTLKTTT 57
P + P+VE Y ++ F + L+ P + +RVNT +
Sbjct: 5 PKISLRPEVENYLKESFLNEEAVSASSRQEAERKFETLLLRLSHPPSMTTVRVNTHLGSV 64
Query: 58 DDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGY 117
V LL +Q + +I Q P L V+ + +GP
Sbjct: 65 QHVRGLLLEELQK--------------QFGESSIPVVQHPALPDVLLIPMTGPRK----- 105
Query: 118 EPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGL 177
++ EVIV +C AVLRGA VYVPG+++ S ++ GDV++V +
Sbjct: 106 NIERQQGEVIVGAQCGNAVLRGAHVYVPGIVSASKFMKAGDVISVYSDI----------- 154
Query: 178 GITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRAS---EGIAVDMHNRIFQLPS 234
G +G++ F+ + +++G G + +SR IF +GI + M I+ PS
Sbjct: 155 ---NGKCKKGAKE----FDGTKVFLGNGISELSRKDIFNGLPDLKGIGIRMTEPIYLSPS 207
Query: 235 FYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDR 294
F +VL IFLQNLPS V AH LDPQ GE+ILDMCAAPGGKTT A+L++D+GEV+A+D+
Sbjct: 208 FDNVLPSYIFLQNLPSTVVAHVLDPQPGEKILDMCAAPGGKTTHTAALMQDKGEVIALDK 267
Query: 295 SHNKVMDIQKLAAEMGLKCITTYKLDALKAVR 326
KV +++ A+ +GL I + DA KA++
Sbjct: 268 ILTKVNKLKQNASLLGLHSIRAFCFDATKALK 299
Score = 82.8 bits (203), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
Query: 416 ENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPG 475
E F P SFDR++LDAPCS +G RP + A T++ + ++ QR++ AVQL++PG
Sbjct: 307 EGGPPFLPESFDRIILDAPCSGMGQRPNM-ACTWTLKEVTSYQPLQRKLLHVAVQLLKPG 365
Query: 476 GIIVYSTCTINPGENE 491
G++VYSTCTI ENE
Sbjct: 366 GVLVYSTCTITLAENE 381
>sp|Q8TEA1|NSUN6_HUMAN Putative methyltransferase NSUN6 OS=Homo sapiens GN=NSUN6 PE=1 SV=1
Length = 469
Score = 162 bits (411), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 108/335 (32%), Positives = 166/335 (49%), Gaps = 53/335 (15%)
Query: 8 SYSPLLRWNPQVEEYF---------IRAYGADH----FSRISKALTRPSCYSCIRVNTLK 54
S P + P+VE Y + A G F + K L+ P ++ +RVNT
Sbjct: 2 SIFPKISLRPEVENYLKEGFMNKEIVTALGKQEAERKFETLLKHLSHPPSFTTVRVNTHL 61
Query: 55 TTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTID 114
+ V LL +Q + ++ Q P L+ V+ + GP
Sbjct: 62 ASVQHVKNLLLDELQK--------------QFNGLSVPILQHPDLQDVLLIPVIGPRK-- 105
Query: 115 YGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGG 174
K E IV +C AVLRGA VY PG+++ S ++ GDV++V +
Sbjct: 106 ---NIKKQQCEAIVGAQCGNAVLRGAHVYAPGIVSASQFMKAGDVISVYSDI-------- 154
Query: 175 WGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRAS---EGIAVDMHNRIFQ 231
+G +G++ F+ + +++G G + +SR IF +G+ + M ++
Sbjct: 155 ------KGKCKKGAKE----FDGTKVFLGNGISELSRKEIFSGLPELKGMGIRMTEPVYL 204
Query: 232 LPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVA 291
PSF VL +FLQNLPS + +H L+PQ GE+ILD+CAAPGGKTT IA+L+ D+GEV+A
Sbjct: 205 SPSFDSVLPRYLFLQNLPSALVSHVLNPQPGEKILDLCAAPGGKTTHIAALMHDQGEVIA 264
Query: 292 VDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVR 326
+D+ NKV I++ A +GL I + D KAV+
Sbjct: 265 LDKIFNKVEKIKQNALLLGLNSIRAFCFDGTKAVK 299
Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
Query: 416 ENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPG 475
E F P SFDR+LLDAPCS +G RP + A +++ + ++ QR++F AVQL++P
Sbjct: 307 EGEPPFLPESFDRILLDAPCSGMGQRPNM-ACTWSVKEVASYQPLQRKLFTAAVQLLKPE 365
Query: 476 GIIVYSTCTINPGENE 491
G++VYSTCTI ENE
Sbjct: 366 GVLVYSTCTITLAENE 381
>sp|Q9V106|TRCM_PYRAB tRNA (cytosine(49)-C(5))-methyltransferase OS=Pyrococcus abyssi
(strain GE5 / Orsay) GN=PYRAB06230 PE=1 SV=1
Length = 311
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 51/73 (69%), Gaps = 2/73 (2%)
Query: 424 NSFDRVLLDAPCSALGL--RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYS 481
N+FDRVLLDAPCS++G+ + FA +I + H + Q+R+ A + ++PGG++VYS
Sbjct: 178 NTFDRVLLDAPCSSVGMIRKNFKFARTWSIGKVYYHSRLQKRLILAAYKSLKPGGVLVYS 237
Query: 482 TCTINPGENEALC 494
TCT++P ENE +
Sbjct: 238 TCTVDPLENEEVV 250
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNK 298
G I Q S++ LDP+ E ILDM AAPG KTT +A + +EG ++A D ++
Sbjct: 90 GLIIPQEASSMIPPVVLDPKPSEVILDMAAAPGSKTTQMAQYMENEGCIIANDAKRDR 147
>sp|P94464|RSMB_BACSU Ribosomal RNA small subunit methyltransferase B OS=Bacillus
subtilis (strain 168) GN=rsmB PE=3 SV=2
Length = 447
Score = 72.4 bits (176), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 55/84 (65%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
GE+ +Q+ S++ A ALDP+ E +LD CAAPGGK+ IA L++++G V ++D +KV
Sbjct: 231 GEVSIQDESSMLVARALDPKSDETVLDACAAPGGKSAHIAELMKNKGSVTSLDLHKHKVK 290
Query: 301 DIQKLAAEMGLKCITTYKLDALKA 324
I++ A +GL I +DA KA
Sbjct: 291 LIKEAADRLGLTIIHAETMDARKA 314
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 421 FSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
F FDR+L+DAPCS G+ +P + ++ S R + Q + + LV+ GG
Sbjct: 318 FENEQFDRILVDAPCSGFGVIRRKPDMKYTKKPDDSAR-LAEIQLSILREIAPLVKKGGT 376
Query: 478 IVYSTCTINPGENE 491
+VYSTCT++ EN+
Sbjct: 377 LVYSTCTMDRTEND 390
>sp|P72943|RSMB_SYNY3 Ribosomal RNA small subunit methyltransferase B OS=Synechocystis
sp. (strain PCC 6803 / Kazusa) GN=rsmB PE=3 SV=1
Length = 446
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 51/92 (55%), Gaps = 3/92 (3%)
Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
I QLP F EG +Q+ + A L+PQ E I D+CAAPGGKTT IA L+ D+G+
Sbjct: 223 ITQLPGFA---EGWWTVQDASAQWVAQILNPQPEETIFDVCAAPGGKTTHIAELMGDQGQ 279
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
+ A DR ++ + +GL I ++ D
Sbjct: 280 IYAGDRHGWRLQKLAVTQQRLGLTSIKIWEGD 311
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 427 DRVLLDAPCSALGLRPRL--FAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCT 484
DR LLD PCS LG R +T ++ Q+ + LV+ GG +VYSTCT
Sbjct: 325 DRALLDVPCSGLGTLHRNPDLRWRQTPATIATLLPLQQALLKAIAPLVKSGGTLVYSTCT 384
Query: 485 INPGENEA 492
+NP ENEA
Sbjct: 385 LNPAENEA 392
>sp|A4WBJ4|RSMF_ENT38 Ribosomal RNA small subunit methyltransferase F OS=Enterobacter sp.
(strain 638) GN=rsmF PE=3 SV=1
Length = 480
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 45/80 (56%), Gaps = 14/80 (17%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--------GKYQRRMFDQAVQLVRP 474
P SFD +LLDAPCS G+ + +L+N QR + D A +RP
Sbjct: 185 PESFDAILLDAPCSGEGV------VRKDPDALKNWSVASNLEIAATQRELIDSAFHALRP 238
Query: 475 GGIIVYSTCTINPGENEALC 494
GG++VYSTCT+N ENE++C
Sbjct: 239 GGMLVYSTCTLNRDENESVC 258
Score = 41.2 bits (95), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 239 LEGEIFLQNLPSI--VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296
L G ++Q S+ VTA + + ER++D+ AAPG KTT IA+ + + G ++A + S
Sbjct: 93 LSGLFYIQEASSMLPVTALFAEDNQPERVMDVAAAPGSKTTQIAARMGNRGVILANEFSA 152
Query: 297 NKVMDIQKLAAEMGLKCITTYKLD 320
++V + + G+ + D
Sbjct: 153 SRVKVLHANISRCGISNVALTHFD 176
>sp|Q6LQU5|RSMF_PHOPR Ribosomal RNA small subunit methyltransferase F OS=Photobacterium
profundum GN=rsmF PE=3 SV=2
Length = 476
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Query: 420 GFSPNSFDRVLLDAPCSALG-LRPRLFA-AEETIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
G++P SFD +LLDAPCS G +R A A ++ S+ + QR + A Q ++ GG+
Sbjct: 181 GWAPESFDTILLDAPCSGEGAIRKDGDAMANWSLSSIEDIAAIQRNLIISAFQALKTGGM 240
Query: 478 IVYSTCTINPGENEALC 494
+VYSTCT+N EN+ +C
Sbjct: 241 MVYSTCTLNLSENQHVC 257
Score = 33.9 bits (76), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 239 LEGEIFLQNLPSI--VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296
+ G ++Q S+ VTA + + +LDM +APG KTT IA +++ G +VA + +
Sbjct: 92 MAGLFYIQEASSMMPVTALLKNNDALDCVLDMASAPGSKTTQIACAMQNRGVLVANELAA 151
Query: 297 NKV 299
+++
Sbjct: 152 SRI 154
>sp|Q96P11|NSUN5_HUMAN Putative methyltransferase NSUN5 OS=Homo sapiens GN=NSUN5 PE=1 SV=2
Length = 429
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 68/136 (50%), Gaps = 8/136 (5%)
Query: 194 YFERSGL-YIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVLE------GEIFLQ 246
YF+R G Y G+ +++ + + + + + P+ D+ E G + LQ
Sbjct: 153 YFKRQGFSYQGRASSLDDLRAL-KGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHLILQ 211
Query: 247 NLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLA 306
+ S + A LDP G ++D CAAPG KT+ +A+LL+++G++ A D ++ + L
Sbjct: 212 DRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLL 271
Query: 307 AEMGLKCITTYKLDAL 322
A G+ C + D L
Sbjct: 272 ARAGVSCCELAEEDFL 287
>sp|Q7MKY6|RSMF_VIBVY Ribosomal RNA small subunit methyltransferase F OS=Vibrio
vulnificus (strain YJ016) GN=rsmF PE=3 SV=2
Length = 472
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 64/121 (52%), Gaps = 12/121 (9%)
Query: 378 VSNEKGVERTYVSKADTRKNMRR--MRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPC 435
V+NE R V A N+ R +RN N GR G+ P SFD VLLDAPC
Sbjct: 144 VANEYAASRVKVLHA----NIERCGVRNAALSN--FDGRVFG--GWLPESFDAVLLDAPC 195
Query: 436 SALG-LRPRLFAAEETIQ-SLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEAL 493
S G +R A + Q S+ Q+ + + A Q ++PGG++VYSTCT++ EN+ +
Sbjct: 196 SGEGTVRKDEDAMKNWSQESVLEIAATQKDLIESAFQALKPGGVMVYSTCTLSEEENQQV 255
Query: 494 C 494
C
Sbjct: 256 C 256
Score = 40.4 bits (93), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Query: 241 GEIFLQNLPSI--VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNK 298
G ++Q S+ V+A L + E +LD AAPG KTT IA+L+ ++G +VA + + ++
Sbjct: 93 GLFYIQEASSMMPVSALFLGENQFESVLDTAAAPGSKTTQIAALMNNQGILVANEYAASR 152
Query: 299 V 299
V
Sbjct: 153 V 153
>sp|Q8D9F3|RSMF_VIBVU Ribosomal RNA small subunit methyltransferase F OS=Vibrio
vulnificus (strain CMCP6) GN=rsmF PE=3 SV=1
Length = 472
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 64/121 (52%), Gaps = 12/121 (9%)
Query: 378 VSNEKGVERTYVSKADTRKNMRR--MRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPC 435
V+NE R V A N+ R +RN N GR G+ P SFD VLLDAPC
Sbjct: 144 VANEYAASRVKVLHA----NIERCGVRNAALSN--FDGRVFG--GWLPESFDAVLLDAPC 195
Query: 436 SALG-LRPRLFAAEETIQ-SLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEAL 493
S G +R A + Q S+ Q+ + + A Q ++PGG++VYSTCT++ EN+ +
Sbjct: 196 SGEGTVRKDEDAMKNWSQESVLEIAATQKDLIESAFQALKPGGVMVYSTCTLSEEENQQV 255
Query: 494 C 494
C
Sbjct: 256 C 256
Score = 40.4 bits (93), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Query: 241 GEIFLQNLPSI--VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNK 298
G ++Q S+ V+A L + E +LD AAPG KTT IA+L+ ++G +VA + + ++
Sbjct: 93 GLFYIQEASSMMPVSALFLGENQFESVLDTAAAPGSKTTQIAALMNNQGILVANEYAASR 152
Query: 299 V 299
V
Sbjct: 153 V 153
>sp|A8AFL6|RSMF_CITK8 Ribosomal RNA small subunit methyltransferase F OS=Citrobacter
koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
GN=rsmF PE=3 SV=1
Length = 479
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAA--EETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVY 480
P +FD +LLDAPCS G+ + A +++S + QR + D A +RPGG +VY
Sbjct: 185 PETFDAILLDAPCSGEGVVRKDPDALKNWSVESNLDIAATQRELIDSAFHALRPGGTLVY 244
Query: 481 STCTINPGENEALC 494
STCT+N ENE++C
Sbjct: 245 STCTLNREENESVC 258
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 239 LEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296
L G ++Q S++ AL + ERI+D+ AAPG KTT IA+ + ++G ++A + S
Sbjct: 93 LSGLFYIQEASSMLPVAALFAEGNTPERIMDVAAAPGSKTTQIAARMNNQGAILANEFSA 152
Query: 297 NKVMDIQKLAAEMGLKCITTYKLD 320
++V + + G+ + D
Sbjct: 153 SRVKVLHANISRCGISNVALTHFD 176
>sp|B5FE06|RSMF_VIBFM Ribosomal RNA small subunit methyltransferase F OS=Vibrio fischeri
(strain MJ11) GN=rsmF PE=3 SV=1
Length = 473
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 420 GFSPNSFDRVLLDAPCSALG-LRPRLFAAEE-TIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
G+ P +FD +LLDAPCS G +R A + +S+ G QR + + A ++PGG+
Sbjct: 181 GWLPETFDSILLDAPCSGEGTIRKDPDAMHNWSPESVIEIGDTQRDLIESAFHALKPGGV 240
Query: 478 IVYSTCTINPGENEALC 494
+VYSTCT+N EN+ +C
Sbjct: 241 MVYSTCTLNHEENQNIC 257
Score = 38.9 bits (89), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 231 QLPSFYDVLEGEIFLQNLPSI--VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
+L S + + G ++Q S+ VTA D E LDM +APG KTT +A+ ++++G
Sbjct: 84 KLGSTAEHMAGLFYIQEASSMMPVTALLKDNDDIEMALDMASAPGSKTTQLAAGMKNQGA 143
Query: 289 VVAVDRSHNKV 299
+VA + S ++V
Sbjct: 144 LVANEFSSSRV 154
>sp|B6IBR3|RSMF_ECOSE Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain SE11) GN=rsmF PE=3 SV=2
Length = 479
Score = 63.5 bits (153), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 185 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 244
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 245 STCTLNQEENEAVC 258
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 219 EGIAVDMHNR-IFQLPSFYDVLEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGK 275
EG ++ N L S + L G ++Q S++ AL D +R++D+ AAPG K
Sbjct: 72 EGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVMDVAAAPGSK 131
Query: 276 TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
TT IA+ + +EG ++A + S ++V + + G+ + D
Sbjct: 132 TTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFD 176
>sp|P76273|RSMF_ECOLI Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain K12) GN=rsmF PE=1 SV=2
Length = 479
Score = 63.5 bits (153), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 185 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 244
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 245 STCTLNQEENEAVC 258
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 219 EGIAVDMHNR-IFQLPSFYDVLEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGK 275
EG ++ N L S + L G ++Q S++ AL D +R++D+ AAPG K
Sbjct: 72 EGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSK 131
Query: 276 TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
TT I++ + +EG ++A + S ++V + + G+ + D
Sbjct: 132 TTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFD 176
>sp|B1XHA3|RSMF_ECODH Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain K12 / DH10B) GN=rsmF PE=3 SV=1
Length = 479
Score = 63.5 bits (153), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 185 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 244
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 245 STCTLNQEENEAVC 258
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 219 EGIAVDMHNR-IFQLPSFYDVLEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGK 275
EG ++ N L S + L G ++Q S++ AL D +R++D+ AAPG K
Sbjct: 72 EGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSK 131
Query: 276 TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
TT I++ + +EG ++A + S ++V + + G+ + D
Sbjct: 132 TTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFD 176
>sp|C4ZZJ2|RSMF_ECOBW Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain K12 / MC4100 / BW2952) GN=rsmF PE=3 SV=1
Length = 479
Score = 63.5 bits (153), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 185 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 244
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 245 STCTLNQEENEAVC 258
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 219 EGIAVDMHNR-IFQLPSFYDVLEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGK 275
EG ++ N L S + L G ++Q S++ AL D +R++D+ AAPG K
Sbjct: 72 EGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSK 131
Query: 276 TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
TT I++ + +EG ++A + S ++V + + G+ + D
Sbjct: 132 TTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFD 176
>sp|B7M2B1|RSMF_ECO8A Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O8 (strain IAI1) GN=rsmF PE=3 SV=1
Length = 479
Score = 63.5 bits (153), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 185 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 244
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 245 STCTLNQEENEAVC 258
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 219 EGIAVDMHNR-IFQLPSFYDVLEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGK 275
EG ++ N L S + L G ++Q S++ AL D +R++D+ AAPG K
Sbjct: 72 EGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVMDVAAAPGSK 131
Query: 276 TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
TT IA+ + +EG ++A + S ++V + + G+ + D
Sbjct: 132 TTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFD 176
>sp|Q321Y0|RSMF_SHIBS Ribosomal RNA small subunit methyltransferase F OS=Shigella boydii
serotype 4 (strain Sb227) GN=rsmF PE=3 SV=2
Length = 479
Score = 63.5 bits (153), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 185 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 244
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 245 STCTLNQEENEAVC 258
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 219 EGIAVDMHNR-IFQLPSFYDVLEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGK 275
EG ++ N L S + L G ++Q S++ AL D +R++D+ AAPG K
Sbjct: 72 EGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSK 131
Query: 276 TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
TT IA+ + +EG ++A + S ++V + + G+ + D
Sbjct: 132 TTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFD 176
>sp|B2U477|RSMF_SHIB3 Ribosomal RNA small subunit methyltransferase F OS=Shigella boydii
serotype 18 (strain CDC 3083-94 / BS512) GN=rsmF PE=3
SV=2
Length = 479
Score = 63.5 bits (153), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 185 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 244
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 245 STCTLNQEENEAVC 258
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 219 EGIAVDMHNR-IFQLPSFYDVLEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGK 275
EG ++ N L S + L G ++Q S++ AL D +R++D+ AAPG K
Sbjct: 72 EGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSK 131
Query: 276 TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
TT IA+ + +EG ++A + S ++V + + G+ + D
Sbjct: 132 TTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFD 176
>sp|B7L7N7|RSMF_ECO55 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain 55989 / EAEC) GN=rsmF PE=3 SV=1
Length = 479
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 185 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 244
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 245 STCTLNQEENEAVC 258
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 219 EGIAVDMHNR-IFQLPSFYDVLEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGK 275
EG ++ N L S + L G ++Q S++ AL D +R++D+ AAPG K
Sbjct: 72 EGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVMDVAAAPGSK 131
Query: 276 TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
TT IA+ + +EG ++A + S ++V + + G+ + D
Sbjct: 132 TTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFD 176
>sp|A7ZMV8|RSMF_ECO24 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O139:H28 (strain E24377A / ETEC) GN=rsmF PE=3 SV=2
Length = 479
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 185 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 244
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 245 STCTLNQEENEAVC 258
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 219 EGIAVDMHNR-IFQLPSFYDVLEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGK 275
EG ++ N L S + L G ++Q S++ AL D +R++D+ AAPG K
Sbjct: 72 EGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVMDVAAAPGSK 131
Query: 276 TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
TT IA+ + +EG ++A + S ++V + + G+ + D
Sbjct: 132 TTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFD 176
>sp|Q3Z2H4|RSMF_SHISS Ribosomal RNA small subunit methyltransferase F OS=Shigella sonnei
(strain Ss046) GN=rsmF PE=3 SV=2
Length = 479
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 185 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 244
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 245 STCTLNQEENEAVC 258
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 219 EGIAVDMHNR-IFQLPSFYDVLEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGK 275
EG ++ N L S + L G ++Q S++ AL D +R++D+ AAPG K
Sbjct: 72 EGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSK 131
Query: 276 TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
TT I++ + +EG ++A + S ++V + + G+ + D
Sbjct: 132 TTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFD 176
>sp|Q83RJ3|RSMF_SHIFL Putative ribosomal RNA small subunit methyltransferase F
OS=Shigella flexneri GN=rsmF PE=5 SV=2
Length = 479
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 411 LGGRAENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQA 468
GGR + P FD +LLDAPCS G+ + A + N QR + D A
Sbjct: 175 FGGRVFGAA--VPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSA 232
Query: 469 VQLVRPGGIIVYSTCTINPGENEALC 494
+RPGG +VYSTCT+N ENEA+C
Sbjct: 233 FHALRPGGTLVYSTCTLNREENEAVC 258
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 219 EGIAVDMHNR-IFQLPSFYDVLEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGK 275
EG ++ N L S + L G ++Q S++ AL D +R++D+ AAPG K
Sbjct: 72 EGFWIERDNEDALPLGSTTEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSK 131
Query: 276 TTAIASLLRDEGEVVAVDRSHNKV 299
TT IA+ + +EG ++A + S + V
Sbjct: 132 TTQIAARMNNEGAILANEFSASWV 155
>sp|Q0T529|RSMF_SHIF8 Ribosomal RNA small subunit methyltransferase F OS=Shigella
flexneri serotype 5b (strain 8401) GN=rsmF PE=3 SV=2
Length = 479
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 411 LGGRAENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQA 468
GGR + P FD +LLDAPCS G+ + A + N QR + D A
Sbjct: 175 FGGRVFGAA--VPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSA 232
Query: 469 VQLVRPGGIIVYSTCTINPGENEALC 494
+RPGG +VYSTCT+N ENEA+C
Sbjct: 233 FHALRPGGTLVYSTCTLNREENEAVC 258
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 219 EGIAVDMHNR-IFQLPSFYDVLEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGK 275
EG ++ N L S + L G ++Q S++ AL D +R++D+ AAPG K
Sbjct: 72 EGFWIERDNEDALPLGSTTEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSK 131
Query: 276 TTAIASLLRDEGEVVAVDRSHNKV 299
TT IA+ + +EG ++A + S + V
Sbjct: 132 TTQIAARMNNEGAILANEFSASWV 155
>sp|Q8FGS9|RSMF_ECOL6 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=rsmF PE=3
SV=2
Length = 479
Score = 63.2 bits (152), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 185 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 244
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 245 STCTLNREENEAVC 258
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 219 EGIAVDMHNR-IFQLPSFYDVLEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGK 275
EG ++ N L S + L G ++Q S++ AL D +R++D+ AAPG K
Sbjct: 72 EGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSK 131
Query: 276 TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
TT IA+ + +EG ++A + S ++V + + G+ + D
Sbjct: 132 TTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFD 176
>sp|B6ELC0|RSMF_ALISL Ribosomal RNA small subunit methyltransferase F OS=Aliivibrio
salmonicida (strain LFI1238) GN=rsmF PE=3 SV=1
Length = 473
Score = 63.2 bits (152), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Query: 420 GFSPNSFDRVLLDAPCSALG-LRPRLFAAEE-TIQSLRNHGKYQRRMFDQAVQLVRPGGI 477
G+ P +FD +LLDAPCS G +R A + +S+ G QR + A ++PGG+
Sbjct: 181 GWLPETFDSILLDAPCSGEGTIRKDPDAMHNWSPESVIEIGDTQRDLIKSAFHALKPGGV 240
Query: 478 IVYSTCTINPGENEALC 494
+VYSTCT+N EN+ +C
Sbjct: 241 MVYSTCTLNHEENQNIC 257
Score = 39.3 bits (90), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 231 QLPSFYDVLEGEIFLQNLPSI--VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
+L S + + G ++Q S+ VTA D E LDM +APG KTT +A+ ++++G
Sbjct: 84 KLGSTAEHMAGLFYIQEASSMMPVTALLKDNDNIEMALDMASAPGSKTTQLAAGMKNKGA 143
Query: 289 VVAVDRSHNKV 299
+VA + S ++V
Sbjct: 144 LVANEYSSSRV 154
>sp|B1J0Q3|RSMF_ECOLC Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain ATCC 8739 / DSM 1576 / Crooks) GN=rsmF PE=3 SV=2
Length = 479
Score = 63.2 bits (152), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 185 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 244
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 245 STCTLNREENEAVC 258
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 219 EGIAVDMHNR-IFQLPSFYDVLEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGK 275
EG ++ N L S + L G ++Q S++ AL D +R++D+ AAPG K
Sbjct: 72 EGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSK 131
Query: 276 TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
TT IA+ + +EG ++A + S ++V + + G+ + D
Sbjct: 132 TTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFD 176
>sp|A8A133|RSMF_ECOHS Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O9:H4 (strain HS) GN=rsmF PE=3 SV=2
Length = 479
Score = 63.2 bits (152), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 185 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 244
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 245 STCTLNREENEAVC 258
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 219 EGIAVDMHNR-IFQLPSFYDVLEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGK 275
EG ++ N L S + L G ++Q S++ AL D +R++D+ AAPG K
Sbjct: 72 EGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSK 131
Query: 276 TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
TT IA+ + +EG ++A + S ++V + + G+ + D
Sbjct: 132 TTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFD 176
>sp|B7MVW5|RSMF_ECO81 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O81 (strain ED1a) GN=rsmF PE=3 SV=1
Length = 479
Score = 63.2 bits (152), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 185 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 244
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 245 STCTLNREENEAVC 258
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 219 EGIAVDMHNR-IFQLPSFYDVLEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGK 275
EG ++ N L S + L G ++Q S++ AL D +R++D+ AAPG K
Sbjct: 72 EGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSK 131
Query: 276 TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
TT IA+ + +EG ++A + S ++V + + G+ + D
Sbjct: 132 TTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFD 176
>sp|B7USL2|RSMF_ECO27 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O127:H6 (strain E2348/69 / EPEC) GN=rsmF PE=3 SV=1
Length = 479
Score = 63.2 bits (152), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 185 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 244
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 245 STCTLNREENEAVC 258
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 239 LEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296
L G ++Q S++ AL D +R++D+ AAPG KTT IA+ + +EG ++A + S
Sbjct: 93 LSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGAILANEFSA 152
Query: 297 NKVMDIQKLAAEMGLKCITTYKLD 320
++V + + G+ + D
Sbjct: 153 SRVKVLHANISRCGISNVALTHFD 176
>sp|Q0TGZ7|RSMF_ECOL5 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O6:K15:H31 (strain 536 / UPEC) GN=rsmF PE=3 SV=2
Length = 479
Score = 62.8 bits (151), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 185 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 244
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 245 STCTLNREENEAVC 258
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 3/105 (2%)
Query: 219 EGIAVDMHNR-IFQLPSFYDVLEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGK 275
EG ++ +N L S + L G ++Q S++ AL + +R++D+ AAPG K
Sbjct: 72 EGFWIERYNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFANGNAPQRVMDVAAAPGSK 131
Query: 276 TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
TT IA+ + +EG ++A + S ++V + + G+ + D
Sbjct: 132 TTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFD 176
>sp|B1LD37|RSMF_ECOSM Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain SMS-3-5 / SECEC) GN=rsmF PE=3 SV=2
Length = 479
Score = 62.8 bits (151), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 185 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 244
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 245 STCTLNREENEAVC 258
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 239 LEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296
L G ++Q S++ AL D +R++D+ AAPG KTT IA+ + +EG ++A + S
Sbjct: 93 LSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGAILANEFSA 152
Query: 297 NKVMDIQKLAAEMGLKCITTYKLD 320
++V + + G+ + D
Sbjct: 153 SRVKVLHANISRCGISNVALTHFD 176
>sp|B7NS84|RSMF_ECO7I Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O7:K1 (strain IAI39 / ExPEC) GN=rsmF PE=3 SV=1
Length = 479
Score = 62.8 bits (151), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 185 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 244
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 245 STCTLNREENEAVC 258
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 219 EGIAVDMHNR-IFQLPSFYDVLEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGK 275
EG ++ N L S + L G ++Q S++ AL D +R++D+ AAPG K
Sbjct: 72 EGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSK 131
Query: 276 TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
TT IA+ + +EG ++A + S ++V + + G+ + D
Sbjct: 132 TTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFD 176
>sp|Q8Z662|RSMF_SALTI Ribosomal RNA small subunit methyltransferase F OS=Salmonella typhi
GN=rsmF PE=3 SV=1
Length = 479
Score = 62.8 bits (151), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 43/80 (53%), Gaps = 14/80 (17%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--------GKYQRRMFDQAVQLVRP 474
P FD +LLDAPCS G+ + +L+N QR + D A +RP
Sbjct: 185 PEMFDAILLDAPCSGEGV------VRKDPDALKNWSPESNLDIAATQRELLDSAFHALRP 238
Query: 475 GGIIVYSTCTINPGENEALC 494
GG +VYSTCT+N ENEA+C
Sbjct: 239 GGTLVYSTCTLNRQENEAVC 258
Score = 42.4 bits (98), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 239 LEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296
L G ++Q S++ AL D +R++DM AAPG KTT IA+ + + G ++A + S
Sbjct: 93 LSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAILANEFSA 152
Query: 297 NKV 299
++V
Sbjct: 153 SRV 155
>sp|B7LPL0|RSMF_ESCF3 Ribosomal RNA small subunit methyltransferase F OS=Escherichia
fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73)
GN=rsmF PE=3 SV=1
Length = 479
Score = 62.8 bits (151), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--GKYQRRMFDQAVQLVRPGGIIVY 480
P FD +LLDAPCS G+ + A + N QR + D A +RPGG +VY
Sbjct: 185 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 244
Query: 481 STCTINPGENEALC 494
STCT+N ENEA+C
Sbjct: 245 STCTLNREENEAVC 258
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 239 LEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296
L G ++Q S++ AL D +R++D+ AAPG KTT IA+ + +EG ++A + S
Sbjct: 93 LSGLFYIQEASSMLPVAALFADGNSPQRVMDVAAAPGSKTTQIAARMNNEGAILANEFSA 152
Query: 297 NKVMDIQKLAAEMGLKCITTYKLD 320
++V + + G++ + D
Sbjct: 153 SRVKVLHANISRCGIRNVALTHFD 176
>sp|A9MV57|RSMF_SALPB Ribosomal RNA small subunit methyltransferase F OS=Salmonella
paratyphi B (strain ATCC BAA-1250 / SPB7) GN=rsmF PE=3
SV=2
Length = 479
Score = 62.8 bits (151), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 43/80 (53%), Gaps = 14/80 (17%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--------GKYQRRMFDQAVQLVRP 474
P FD +LLDAPCS G+ + +L+N QR + D A +RP
Sbjct: 185 PEMFDAILLDAPCSGEGV------VRKDPDALKNWSPESNLDIAATQRELLDSAFHALRP 238
Query: 475 GGIIVYSTCTINPGENEALC 494
GG +VYSTCT+N ENEA+C
Sbjct: 239 GGTLVYSTCTLNRQENEAVC 258
Score = 42.4 bits (98), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 239 LEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296
L G ++Q S++ AL D +R++DM AAPG KTT IA+ + + G ++A + S
Sbjct: 93 LSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAILANEFSA 152
Query: 297 NKV 299
++V
Sbjct: 153 SRV 155
>sp|B4SV89|RSMF_SALNS Ribosomal RNA small subunit methyltransferase F OS=Salmonella
newport (strain SL254) GN=rsmF PE=3 SV=2
Length = 479
Score = 62.8 bits (151), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 43/80 (53%), Gaps = 14/80 (17%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--------GKYQRRMFDQAVQLVRP 474
P FD +LLDAPCS G+ + +L+N QR + D A +RP
Sbjct: 185 PEMFDAILLDAPCSGEGV------VRKDPDALKNWSPESNLDIAATQRELLDSAFHALRP 238
Query: 475 GGIIVYSTCTINPGENEALC 494
GG +VYSTCT+N ENEA+C
Sbjct: 239 GGTLVYSTCTLNRQENEAVC 258
Score = 42.4 bits (98), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 239 LEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296
L G ++Q S++ AL D +R++DM AAPG KTT IA+ + + G ++A + S
Sbjct: 93 LSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAILANEFSA 152
Query: 297 NKV 299
++V
Sbjct: 153 SRV 155
>sp|Q8ZNZ2|RSMF_SALTY Ribosomal RNA small subunit methyltransferase F OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=rsmF PE=3 SV=1
Length = 479
Score = 62.8 bits (151), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 43/80 (53%), Gaps = 14/80 (17%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--------GKYQRRMFDQAVQLVRP 474
P FD +LLDAPCS G+ + +L+N QR + D A +RP
Sbjct: 185 PEMFDAILLDAPCSGEGV------VRKDPDALKNWSPESNLDIAATQRELLDSAFHALRP 238
Query: 475 GGIIVYSTCTINPGENEALC 494
GG +VYSTCT+N ENEA+C
Sbjct: 239 GGTLVYSTCTLNRQENEAVC 258
Score = 42.4 bits (98), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 239 LEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296
L G ++Q S++ AL D +R++DM AAPG KTT IA+ + + G ++A + S
Sbjct: 93 LSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAILANEFSA 152
Query: 297 NKV 299
++V
Sbjct: 153 SRV 155
>sp|B4TY18|RSMF_SALSV Ribosomal RNA small subunit methyltransferase F OS=Salmonella
schwarzengrund (strain CVM19633) GN=rsmF PE=3 SV=2
Length = 479
Score = 62.8 bits (151), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 43/80 (53%), Gaps = 14/80 (17%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--------GKYQRRMFDQAVQLVRP 474
P FD +LLDAPCS G+ + +L+N QR + D A +RP
Sbjct: 185 PEMFDAILLDAPCSGEGV------VRKDPDALKNWSPESNLDIAATQRELLDSAFHALRP 238
Query: 475 GGIIVYSTCTINPGENEALC 494
GG +VYSTCT+N ENEA+C
Sbjct: 239 GGTLVYSTCTLNRQENEAVC 258
Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 239 LEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296
L G ++Q S++ AL D +R++DM AAPG KTT IA+ + + G ++A + S
Sbjct: 93 LSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAILANEFSA 152
Query: 297 NKV 299
++V
Sbjct: 153 SRV 155
>sp|C0Q2Y5|RSMF_SALPC Ribosomal RNA small subunit methyltransferase F OS=Salmonella
paratyphi C (strain RKS4594) GN=rsmF PE=3 SV=1
Length = 479
Score = 62.8 bits (151), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 43/80 (53%), Gaps = 14/80 (17%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--------GKYQRRMFDQAVQLVRP 474
P FD +LLDAPCS G+ + +L+N QR + D A +RP
Sbjct: 185 PEMFDAILLDAPCSGEGV------VRKDPDALKNWSPESNLDIAATQRELLDSAFHALRP 238
Query: 475 GGIIVYSTCTINPGENEALC 494
GG +VYSTCT+N ENEA+C
Sbjct: 239 GGTLVYSTCTLNRQENEAVC 258
Score = 42.4 bits (98), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 239 LEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296
L G ++Q S++ AL D +R++DM AAPG KTT IA+ + + G ++A + S
Sbjct: 93 LSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGTILANEFSA 152
Query: 297 NKV 299
++V
Sbjct: 153 SRV 155
>sp|Q57NF9|RSMF_SALCH Ribosomal RNA small subunit methyltransferase F OS=Salmonella
choleraesuis (strain SC-B67) GN=rsmF PE=3 SV=2
Length = 479
Score = 62.8 bits (151), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 43/80 (53%), Gaps = 14/80 (17%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--------GKYQRRMFDQAVQLVRP 474
P FD +LLDAPCS G+ + +L+N QR + D A +RP
Sbjct: 185 PEMFDAILLDAPCSGEGV------VRKDPDALKNWSPESNLDIAATQRELLDSAFHALRP 238
Query: 475 GGIIVYSTCTINPGENEALC 494
GG +VYSTCT+N ENEA+C
Sbjct: 239 GGTLVYSTCTLNRQENEAVC 258
Score = 42.4 bits (98), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 239 LEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296
L G ++Q S++ AL D +R++DM AAPG KTT IA+ + + G ++A + S
Sbjct: 93 LSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGTILANEFSA 152
Query: 297 NKV 299
++V
Sbjct: 153 SRV 155
>sp|B7VNJ8|RSMF_VIBSL Ribosomal RNA small subunit methyltransferase F OS=Vibrio
splendidus (strain LGP32) GN=rsmF PE=3 SV=1
Length = 473
Score = 62.4 bits (150), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 63/121 (52%), Gaps = 12/121 (9%)
Query: 378 VSNEKGVERTYVSKADTRKNMRR--MRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPC 435
V+NE R V A N+ R +RN N GR G+ P FD VLLDAPC
Sbjct: 144 VANEYAASRVKVLHA----NIERCGVRNAALSN--FDGRVFG--GWLPEQFDAVLLDAPC 195
Query: 436 SALG-LRPRLFAAEE-TIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEAL 493
S G +R A + T QS+ + Q+ + + A ++P G++VYSTCT++ EN+ +
Sbjct: 196 SGEGTIRKDADAMKNWTYQSVVDIADTQKDLIESAFHALKPNGVLVYSTCTLSTEENQQV 255
Query: 494 C 494
C
Sbjct: 256 C 256
Score = 36.6 bits (83), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 239 LEGEIFLQNLPSIVTAHALDPQKG--ERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296
+ G ++Q S++ AL + + +LD AAPG KTT IA+L+ + G +VA + +
Sbjct: 91 MSGLFYIQEASSMMPPSALFQGEADYQAVLDTAAAPGSKTTQIAALMNNRGVLVANEYAA 150
Query: 297 NKV 299
++V
Sbjct: 151 SRV 153
>sp|Q8K4F6|NSUN5_MOUSE Putative methyltransferase NSUN5 OS=Mus musculus GN=Nsun5 PE=2 SV=2
Length = 465
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 47/82 (57%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G + LQ+ S + A L P G ++D CAAPG KT+ IA+LL+++G++ A D+ ++
Sbjct: 206 GHLILQDKASCLPAMLLSPPPGSHVIDACAAPGNKTSYIAALLKNQGKIFAFDQDAKRLA 265
Query: 301 DIQKLAAEMGLKCITTYKLDAL 322
+ L A G+ C + D L
Sbjct: 266 AMATLVARAGVSCCELAEKDFL 287
>sp|Q87PA5|RSMF_VIBPA Ribosomal RNA small subunit methyltransferase F OS=Vibrio
parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
GN=rsmF PE=3 SV=1
Length = 478
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 62/121 (51%), Gaps = 12/121 (9%)
Query: 378 VSNEKGVERTYVSKADTRKNMRR--MRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPC 435
V+NE R V A N+ R +RN N GR G+ P FD VLLDAPC
Sbjct: 144 VANEYAASRVKVLHA----NIERCGVRNAALSN--FDGRV--FGGWLPEQFDAVLLDAPC 195
Query: 436 SALG-LRPRLFAAEETIQ-SLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEAL 493
S G +R A + Q S+ Q+ + + A ++PGG++VYSTCT++ EN+ +
Sbjct: 196 SGEGTVRKDEDAMKNWTQASVLEIADTQKDLIESAFHALKPGGVLVYSTCTLSTEENQQV 255
Query: 494 C 494
C
Sbjct: 256 C 256
Score = 42.7 bits (99), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 220 GIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSI--VTAHALDPQKGERILDMCAAPGGKTT 277
G ++ + L + + + G ++Q S+ V+A ++ + + +LD AAPG KTT
Sbjct: 72 GFWIEADESVVPLGNTAEHMSGLFYIQEASSMMPVSALFMNDESYDAVLDTAAAPGSKTT 131
Query: 278 AIASLLRDEGEVVAVDRSHNKV 299
IA+L+++EG +VA + + ++V
Sbjct: 132 QIAALMKNEGVLVANEYAASRV 153
>sp|A7N0K6|RSMF_VIBHB Ribosomal RNA small subunit methyltransferase F OS=Vibrio harveyi
(strain ATCC BAA-1116 / BB120) GN=rsmF PE=3 SV=2
Length = 478
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 62/121 (51%), Gaps = 12/121 (9%)
Query: 378 VSNEKGVERTYVSKADTRKNMRR--MRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPC 435
V+NE R V A N+ R +RN N GR G+ P FD VLLDAPC
Sbjct: 144 VANEYAASRVKVLHA----NIERCGVRNAALSN--FDGRV--FGGWLPEQFDAVLLDAPC 195
Query: 436 SALG-LRPRLFAAEETIQS-LRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEAL 493
S G +R A + QS + Q+ + + A ++PGG++VYSTCT++ EN+ +
Sbjct: 196 SGEGTVRKDEDAMKNWTQSSVVEIADTQKDLIESAFHALKPGGVMVYSTCTLSTEENQQV 255
Query: 494 C 494
C
Sbjct: 256 C 256
Score = 42.0 bits (97), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Query: 220 GIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSI--VTAHALDPQKGERILDMCAAPGGKTT 277
G ++ + L + + + G ++Q S+ V+A ++ + + +LD AAPG KTT
Sbjct: 72 GFWIEADESVVPLGNTAEHMSGLFYIQEASSMMPVSALFMNDESYDAVLDTAAAPGSKTT 131
Query: 278 AIASLLRDEGEVVAVDRSHNKV 299
IA+L+ +EG +VA + + ++V
Sbjct: 132 QIAALMNNEGVLVANEYAASRV 153
>sp|A9MNH4|RSMF_SALAR Ribosomal RNA small subunit methyltransferase F OS=Salmonella
arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)
GN=rsmF PE=3 SV=2
Length = 479
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 43/80 (53%), Gaps = 14/80 (17%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--------GKYQRRMFDQAVQLVRP 474
P FD +LLDAPCS G+ + +L+N QR + + A +RP
Sbjct: 185 PEMFDAILLDAPCSGEGV------VRKDPDALKNWSPESNLDIAATQRELLESAFHALRP 238
Query: 475 GGIIVYSTCTINPGENEALC 494
GG +VYSTCT+N ENEA+C
Sbjct: 239 GGTLVYSTCTLNRQENEAVC 258
Score = 42.4 bits (98), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 239 LEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296
L G ++Q S++ AL D +R++DM AAPG KTT IA+ + + G ++A + S
Sbjct: 93 LSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNHGAILANEFSA 152
Query: 297 NKV 299
++V
Sbjct: 153 SRV 155
>sp|B5F3P3|RSMF_SALA4 Ribosomal RNA small subunit methyltransferase F OS=Salmonella agona
(strain SL483) GN=rsmF PE=3 SV=1
Length = 479
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 42/80 (52%), Gaps = 14/80 (17%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--------GKYQRRMFDQAVQLVRP 474
P FD +LLDAPCS G+ + +L+N QR + D A +RP
Sbjct: 185 PEMFDAILLDAPCSGEGV------VRKDPDALKNWSPESNLDIAATQRELLDSAFHALRP 238
Query: 475 GGIIVYSTCTINPGENEALC 494
GG +VYSTCT+N ENE +C
Sbjct: 239 GGTLVYSTCTLNRQENEEVC 258
Score = 42.4 bits (98), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 239 LEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296
L G ++Q S++ AL D +R++DM AAPG KTT IA+ + + G ++A + S
Sbjct: 93 LSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAILANEFSA 152
Query: 297 NKV 299
++V
Sbjct: 153 SRV 155
>sp|Q8EKR0|RSMB_SHEON Ribosomal RNA small subunit methyltransferase B OS=Shewanella
oneidensis (strain MR-1) GN=rsmB PE=3 SV=1
Length = 428
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 10/85 (11%)
Query: 412 GGRAENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLR-NH-----GKYQRRMF 465
G A + FDR+LLDAPCSA G+ R I+ LR NH + QR++
Sbjct: 296 GDAANIDSWWQGEQFDRILLDAPCSATGVIRR----HPDIKWLRKNHDIEELAELQRQIL 351
Query: 466 DQAVQLVRPGGIIVYSTCTINPGEN 490
D + ++PGG ++Y+TC+I P EN
Sbjct: 352 DHCWKWLKPGGTLLYATCSILPQEN 376
Score = 41.6 bits (96), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 232 LPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVA 291
LP F LEG +Q+ + A L PQ E ILD CAAPGGK+ + L +++A
Sbjct: 214 LPLF---LEGAASVQDGAAQWAATLLAPQANELILDACAAPGGKSCHLLE-LEPSIKLIA 269
Query: 292 VDRSHNKVMDIQKLAAEMGLK 312
VD ++ +Q+ + LK
Sbjct: 270 VDFDAKRLERVQQNLDRLSLK 290
>sp|B5BHA6|RSMF_SALPK Ribosomal RNA small subunit methyltransferase F OS=Salmonella
paratyphi A (strain AKU_12601) GN=rsmF PE=3 SV=1
Length = 479
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 42/80 (52%), Gaps = 14/80 (17%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--------GKYQRRMFDQAVQLVRP 474
P FD +LLDAPCS G+ + +L+N QR + D A +RP
Sbjct: 185 PEMFDAILLDAPCSGEGV------VRKDPDALKNWSPESNLDIAATQRELLDSAFHALRP 238
Query: 475 GGIIVYSTCTINPGENEALC 494
GG +VYSTCT+N ENE +C
Sbjct: 239 GGTLVYSTCTLNRQENEDVC 258
Score = 42.4 bits (98), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 239 LEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296
L G ++Q S++ AL D +R++DM AAPG KTT IA+ + + G ++A + S
Sbjct: 93 LSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAILANEFSA 152
Query: 297 NKV 299
++V
Sbjct: 153 SRV 155
>sp|Q5PHN5|RSMF_SALPA Ribosomal RNA small subunit methyltransferase F OS=Salmonella
paratyphi A (strain ATCC 9150 / SARB42) GN=rsmF PE=3
SV=1
Length = 479
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 42/80 (52%), Gaps = 14/80 (17%)
Query: 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH--------GKYQRRMFDQAVQLVRP 474
P FD +LLDAPCS G+ + +L+N QR + D A +RP
Sbjct: 185 PEMFDAILLDAPCSGEGV------VRKDPDALKNWSPESNLDIAATQRELLDSAFHALRP 238
Query: 475 GGIIVYSTCTINPGENEALC 494
GG +VYSTCT+N ENE +C
Sbjct: 239 GGTLVYSTCTLNRQENEDVC 258
Score = 42.4 bits (98), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 239 LEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296
L G ++Q S++ AL D +R++DM AAPG KTT IA+ + + G ++A + S
Sbjct: 93 LSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAILANEFSA 152
Query: 297 NKV 299
++V
Sbjct: 153 SRV 155
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 184,223,101
Number of Sequences: 539616
Number of extensions: 7714249
Number of successful extensions: 24019
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 23309
Number of HSP's gapped (non-prelim): 545
length of query: 495
length of database: 191,569,459
effective HSP length: 122
effective length of query: 373
effective length of database: 125,736,307
effective search space: 46899642511
effective search space used: 46899642511
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)