Query 011036
Match_columns 495
No_of_seqs 371 out of 2138
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 07:23:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011036.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011036hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1122 tRNA and rRNA cytosine 100.0 4.8E-67 1E-71 537.9 8.7 371 3-495 7-384 (460)
2 COG0144 Sun tRNA and rRNA cyto 100.0 2.3E-50 4.9E-55 418.4 25.2 246 13-495 52-301 (355)
3 PRK11933 yebU rRNA (cytosine-C 100.0 4E-48 8.8E-53 413.5 24.3 162 239-495 89-255 (470)
4 PF01189 Nol1_Nop2_Fmu: NOL1/N 100.0 2E-45 4.4E-50 370.8 15.0 163 239-495 63-232 (283)
5 PRK14903 16S rRNA methyltransf 100.0 2.4E-42 5.2E-47 366.8 25.6 245 13-495 132-379 (431)
6 PRK14901 16S rRNA methyltransf 100.0 1.8E-41 3.8E-46 360.4 25.6 246 14-494 148-396 (434)
7 TIGR00563 rsmB ribosomal RNA s 100.0 1.1E-39 2.4E-44 345.7 25.2 162 238-495 215-381 (426)
8 TIGR00446 nop2p NOL1/NOP2/sun 100.0 4.5E-40 9.8E-45 328.4 20.5 161 239-495 49-212 (264)
9 PRK14904 16S rRNA methyltransf 100.0 1.8E-36 3.8E-41 323.1 24.8 160 239-495 228-390 (445)
10 PRK10901 16S rRNA methyltransf 100.0 3.2E-36 6.9E-41 319.5 26.2 160 239-494 222-384 (427)
11 PRK14902 16S rRNA methyltransf 100.0 4.8E-36 1E-40 319.5 24.8 161 239-494 228-391 (444)
12 KOG2198 tRNA cytosine-5-methyl 100.0 1.2E-35 2.7E-40 303.3 10.7 171 239-495 133-309 (375)
13 KOG2360 Proliferation-associat 99.9 7.1E-25 1.5E-29 224.7 8.5 164 238-495 190-357 (413)
14 PRK15128 23S rRNA m(5)C1962 me 99.7 7.6E-17 1.6E-21 170.2 15.9 165 218-489 180-346 (396)
15 COG1092 Predicted SAM-dependen 99.7 1E-16 2.2E-21 168.4 14.3 168 217-491 176-345 (393)
16 PF10672 Methyltrans_SAM: S-ad 99.6 9.8E-16 2.1E-20 155.1 12.0 163 217-490 82-246 (286)
17 PRK11783 rlmL 23S rRNA m(2)G24 99.6 2.9E-14 6.2E-19 160.6 16.5 165 218-490 498-664 (702)
18 COG2226 UbiE Methylase involve 99.4 1.3E-12 2.8E-17 129.3 11.5 77 246-323 36-112 (238)
19 PRK00377 cbiT cobalt-precorrin 99.4 5.4E-12 1.2E-16 120.7 14.8 74 250-323 29-103 (198)
20 PF13659 Methyltransf_26: Meth 99.4 3.9E-12 8.5E-17 110.1 11.8 116 262-484 1-117 (117)
21 PF01209 Ubie_methyltran: ubiE 99.4 1E-12 2.3E-17 129.6 9.0 75 249-323 35-109 (233)
22 TIGR01177 conserved hypothetic 99.4 7.3E-12 1.6E-16 129.1 15.3 125 254-487 175-299 (329)
23 PTZ00146 fibrillarin; Provisio 99.3 8.9E-12 1.9E-16 126.5 12.9 64 257-322 128-191 (293)
24 PF12847 Methyltransf_18: Meth 99.3 5.4E-12 1.2E-16 108.2 9.4 60 261-321 1-61 (112)
25 PRK14967 putative methyltransf 99.3 3E-11 6.4E-16 117.7 14.6 63 257-322 32-94 (223)
26 TIGR00080 pimt protein-L-isoas 99.3 2.8E-11 6E-16 117.3 14.0 71 253-323 69-139 (215)
27 TIGR00537 hemK_rel_arch HemK-r 99.3 2.9E-11 6.3E-16 113.6 13.5 136 249-486 7-144 (179)
28 COG2242 CobL Precorrin-6B meth 99.3 3.9E-11 8.5E-16 114.2 13.8 76 249-325 22-97 (187)
29 PF05175 MTS: Methyltransferas 99.3 1.8E-11 3.8E-16 114.7 11.2 75 248-323 18-92 (170)
30 PRK07402 precorrin-6B methylas 99.3 5.7E-11 1.2E-15 113.3 14.6 82 241-323 20-101 (196)
31 TIGR03704 PrmC_rel_meth putati 99.3 4.2E-11 9.1E-16 119.3 14.2 126 261-484 86-218 (251)
32 PRK04266 fibrillarin; Provisio 99.3 4E-11 8.7E-16 117.9 13.8 72 247-321 56-129 (226)
33 TIGR03533 L3_gln_methyl protei 99.3 7.3E-11 1.6E-15 119.6 16.0 66 257-323 117-183 (284)
34 TIGR02469 CbiT precorrin-6Y C5 99.3 1.4E-10 3E-15 100.5 14.0 67 254-321 12-78 (124)
35 PRK03522 rumB 23S rRNA methylu 99.2 1.8E-10 3.9E-15 118.2 14.3 66 256-324 168-233 (315)
36 PRK14968 putative methyltransf 99.2 3.7E-10 8.1E-15 105.3 14.9 69 250-321 12-82 (188)
37 TIGR02752 MenG_heptapren 2-hep 99.2 1.9E-10 4.1E-15 111.7 13.2 73 251-323 35-107 (231)
38 TIGR00536 hemK_fam HemK family 99.2 2.2E-10 4.8E-15 115.8 14.1 62 261-323 114-176 (284)
39 PRK11805 N5-glutamine S-adenos 99.2 2.4E-10 5.3E-15 117.2 13.9 61 262-323 134-195 (307)
40 PRK13944 protein-L-isoaspartat 99.2 3.6E-10 7.7E-15 109.1 14.1 70 253-322 64-134 (205)
41 PRK13942 protein-L-isoaspartat 99.2 3.1E-10 6.8E-15 110.1 13.7 70 253-322 68-137 (212)
42 PRK09328 N5-glutamine S-adenos 99.2 3.5E-10 7.6E-15 112.5 14.4 64 257-321 104-167 (275)
43 TIGR03534 RF_mod_PrmC protein- 99.2 3.4E-10 7.4E-15 110.6 14.0 62 261-323 87-148 (251)
44 PRK13168 rumA 23S rRNA m(5)U19 99.2 3E-10 6.5E-15 121.8 13.8 66 255-323 291-356 (443)
45 PF13847 Methyltransf_31: Meth 99.2 2.8E-10 6.1E-15 103.9 11.2 64 260-323 2-65 (152)
46 PLN02233 ubiquinone biosynthes 99.1 4E-10 8.6E-15 112.8 12.5 71 251-321 63-136 (261)
47 PRK11873 arsM arsenite S-adeno 99.1 3.5E-10 7.6E-15 113.0 11.9 65 257-321 73-137 (272)
48 PRK00121 trmB tRNA (guanine-N( 99.1 3.5E-10 7.6E-15 108.9 11.2 62 261-323 40-101 (202)
49 TIGR00479 rumA 23S rRNA (uraci 99.1 6.9E-10 1.5E-14 118.4 14.3 68 254-324 285-352 (431)
50 TIGR00438 rrmJ cell division p 99.1 5.6E-10 1.2E-14 105.8 12.1 56 256-322 27-82 (188)
51 PRK00312 pcm protein-L-isoaspa 99.1 1E-09 2.2E-14 105.8 13.8 67 252-321 69-135 (212)
52 PF08704 GCD14: tRNA methyltra 99.1 4.7E-10 1E-14 111.8 11.5 81 240-322 21-102 (247)
53 PRK08287 cobalt-precorrin-6Y C 99.1 1.2E-09 2.7E-14 103.3 13.3 75 246-321 16-90 (187)
54 COG2265 TrmA SAM-dependent met 99.1 1.2E-09 2.7E-14 116.8 14.0 78 244-324 270-353 (432)
55 PLN02244 tocopherol O-methyltr 99.0 1.6E-09 3.5E-14 112.4 13.0 61 260-322 117-178 (340)
56 PLN02781 Probable caffeoyl-CoA 99.0 3.8E-09 8.1E-14 104.3 14.6 71 255-325 62-133 (234)
57 PRK00107 gidB 16S rRNA methylt 99.0 2.2E-09 4.7E-14 102.8 12.4 63 260-323 44-106 (187)
58 PF01135 PCMT: Protein-L-isoas 99.0 1.1E-09 2.4E-14 106.6 9.9 76 248-323 57-134 (209)
59 PF01472 PUA: PUA domain; Int 99.0 3.3E-10 7.2E-15 92.6 5.0 71 124-226 1-71 (74)
60 COG2519 GCD14 tRNA(1-methylade 99.0 3.2E-09 6.9E-14 105.4 12.3 77 243-321 78-155 (256)
61 PRK11188 rrmJ 23S rRNA methylt 99.0 3.1E-09 6.6E-14 103.2 12.0 54 259-323 49-102 (209)
62 PRK15001 SAM-dependent 23S rib 99.0 4.3E-09 9.3E-14 110.9 14.0 72 249-321 216-290 (378)
63 PLN02476 O-methyltransferase 99.0 8.9E-09 1.9E-13 104.3 15.3 75 251-325 108-183 (278)
64 COG4123 Predicted O-methyltran 99.0 4.9E-09 1.1E-13 104.3 13.0 74 249-323 32-106 (248)
65 COG1041 Predicted DNA modifica 99.0 2.2E-09 4.8E-14 110.9 10.5 132 250-490 186-318 (347)
66 PRK13943 protein-L-isoaspartat 99.0 1.1E-08 2.3E-13 105.8 15.4 69 255-323 74-142 (322)
67 PF02475 Met_10: Met-10+ like- 99.0 1.9E-09 4.2E-14 104.3 8.9 65 259-324 99-164 (200)
68 PRK09489 rsmC 16S ribosomal RN 99.0 7E-09 1.5E-13 108.0 13.7 71 248-320 183-253 (342)
69 TIGR00451 unchar_dom_2 unchara 99.0 6.1E-10 1.3E-14 97.2 4.8 88 102-226 15-102 (107)
70 PRK14966 unknown domain/N5-glu 99.0 8.2E-09 1.8E-13 109.7 14.1 72 250-323 239-311 (423)
71 TIGR02085 meth_trns_rumB 23S r 98.9 9.5E-09 2.1E-13 108.1 14.2 65 257-324 229-293 (374)
72 PRK11207 tellurite resistance 98.9 1.3E-08 2.9E-13 97.5 14.0 71 248-321 17-87 (197)
73 PRK08317 hypothetical protein; 98.9 9E-09 2E-13 98.7 12.8 68 253-321 11-78 (241)
74 KOG1540 Ubiquinone biosynthesi 98.9 3.8E-09 8.2E-14 104.7 10.1 75 249-323 88-170 (296)
75 COG2518 Pcm Protein-L-isoaspar 98.9 9.7E-09 2.1E-13 99.7 12.6 81 240-323 51-131 (209)
76 PRK14121 tRNA (guanine-N(7)-)- 98.9 1.1E-08 2.5E-13 107.8 14.0 67 256-323 117-183 (390)
77 PRK01544 bifunctional N5-gluta 98.9 8.2E-09 1.8E-13 112.7 13.4 62 261-323 138-200 (506)
78 TIGR00138 gidB 16S rRNA methyl 98.9 1.5E-08 3.3E-13 96.3 13.4 62 261-323 42-103 (181)
79 TIGR00091 tRNA (guanine-N(7)-) 98.9 5.9E-09 1.3E-13 99.7 10.6 63 261-324 16-78 (194)
80 PRK14560 putative RNA-binding 98.9 1.3E-09 2.9E-14 101.8 5.9 74 122-226 75-148 (160)
81 PF03602 Cons_hypoth95: Conser 98.9 5.2E-09 1.1E-13 99.9 9.8 64 261-326 42-106 (183)
82 PF05958 tRNA_U5-meth_tr: tRNA 98.9 9.8E-09 2.1E-13 107.2 12.6 67 253-323 189-255 (352)
83 COG2016 Predicted RNA-binding 98.9 1.9E-09 4.2E-14 100.0 6.2 73 123-226 76-148 (161)
84 PRK04338 N(2),N(2)-dimethylgua 98.9 1.9E-08 4.1E-13 106.2 13.7 71 253-324 48-119 (382)
85 PTZ00098 phosphoethanolamine N 98.9 1.9E-08 4.2E-13 100.8 13.1 67 251-321 42-108 (263)
86 PF08241 Methyltransf_11: Meth 98.9 2.3E-09 4.9E-14 88.1 4.6 50 266-320 1-50 (95)
87 PRK15451 tRNA cmo(5)U34 methyl 98.9 3.1E-08 6.8E-13 98.1 13.5 64 259-322 54-119 (247)
88 PF01170 UPF0020: Putative RNA 98.9 5.1E-08 1.1E-12 92.6 14.2 72 252-323 19-99 (179)
89 COG2890 HemK Methylase of poly 98.9 2.9E-08 6.4E-13 100.7 13.4 59 264-323 113-171 (280)
90 PRK05031 tRNA (uracil-5-)-meth 98.9 2.4E-08 5.1E-13 104.7 13.0 61 262-325 207-267 (362)
91 PRK10909 rsmD 16S rRNA m(2)G96 98.8 4.8E-08 1E-12 94.5 13.9 63 260-324 52-114 (199)
92 PRK11036 putative S-adenosyl-L 98.8 4.1E-08 8.9E-13 97.5 13.3 61 260-323 43-104 (255)
93 PRK01683 trans-aconitate 2-met 98.8 3.7E-08 8.1E-13 97.4 12.9 71 245-321 15-85 (258)
94 PF02353 CMAS: Mycolic acid cy 98.8 1.8E-08 3.9E-13 101.9 10.3 68 252-321 53-121 (273)
95 TIGR03684 arCOG00985 arCOG0415 98.8 3.7E-09 8.1E-14 97.7 4.8 74 122-226 68-141 (150)
96 cd02440 AdoMet_MTases S-adenos 98.8 6.8E-08 1.5E-12 78.3 11.7 58 264-323 1-58 (107)
97 PLN02396 hexaprenyldihydroxybe 98.8 4.3E-08 9.4E-13 101.4 12.9 62 258-322 128-190 (322)
98 TIGR00308 TRM1 tRNA(guanine-26 98.8 5.7E-08 1.2E-12 102.4 13.4 63 263-325 46-108 (374)
99 PRK14103 trans-aconitate 2-met 98.8 6.1E-08 1.3E-12 96.2 12.7 63 251-321 19-81 (255)
100 COG0742 N6-adenine-specific me 98.8 9.8E-08 2.1E-12 91.3 13.1 63 261-325 43-106 (187)
101 TIGR02143 trmA_only tRNA (urac 98.8 8.1E-08 1.8E-12 100.4 13.5 65 257-325 194-258 (353)
102 TIGR00095 RNA methyltransferas 98.8 1.3E-07 2.7E-12 90.7 13.6 63 261-325 49-112 (189)
103 COG4122 Predicted O-methyltran 98.8 1.3E-07 2.7E-12 92.8 13.5 73 253-325 51-125 (219)
104 TIGR00477 tehB tellurite resis 98.8 1.9E-07 4.1E-12 89.5 14.5 67 251-321 20-86 (195)
105 PRK10258 biotin biosynthesis p 98.8 4.7E-08 1E-12 96.4 10.7 58 245-305 26-83 (251)
106 COG2520 Predicted methyltransf 98.7 5.1E-08 1.1E-12 101.2 10.7 63 260-324 187-250 (341)
107 TIGR00406 prmA ribosomal prote 98.7 1.6E-07 3.5E-12 95.4 13.9 52 259-312 157-208 (288)
108 PF13649 Methyltransf_25: Meth 98.7 2.6E-08 5.6E-13 84.8 6.3 58 265-323 1-60 (101)
109 PRK00216 ubiE ubiquinone/menaq 98.7 1.5E-07 3.3E-12 90.7 12.4 71 251-321 41-112 (239)
110 PRK11705 cyclopropane fatty ac 98.7 1.7E-07 3.6E-12 99.1 13.3 63 253-320 159-221 (383)
111 COG2813 RsmC 16S RNA G1207 met 98.7 1.7E-07 3.7E-12 95.4 12.7 73 247-320 144-216 (300)
112 PF01596 Methyltransf_3: O-met 98.7 1E-07 2.2E-12 92.7 10.5 63 263-325 47-110 (205)
113 PLN02336 phosphoethanolamine N 98.7 1.3E-07 2.8E-12 101.9 12.5 66 253-321 258-323 (475)
114 PHA03412 putative methyltransf 98.7 7.6E-08 1.7E-12 95.3 9.3 57 260-321 48-106 (241)
115 PHA03411 putative methyltransf 98.7 2.7E-07 5.9E-12 93.3 13.3 61 257-323 60-120 (279)
116 COG2227 UbiG 2-polyprenyl-3-me 98.7 1.2E-07 2.5E-12 93.7 10.2 50 260-312 58-107 (243)
117 PF01728 FtsJ: FtsJ-like methy 98.7 3.7E-08 8.1E-13 92.6 6.6 40 258-297 20-59 (181)
118 COG2230 Cfa Cyclopropane fatty 98.7 2.8E-07 6.1E-12 93.4 12.9 68 251-320 62-130 (283)
119 TIGR00740 methyltransferase, p 98.6 4.9E-07 1.1E-11 88.8 13.7 64 260-323 52-117 (239)
120 PRK12335 tellurite resistance 98.6 5.9E-07 1.3E-11 91.1 14.0 57 261-321 120-176 (287)
121 PRK06922 hypothetical protein; 98.6 8.4E-07 1.8E-11 98.7 15.4 68 254-323 411-478 (677)
122 PRK00517 prmA ribosomal protei 98.6 5.8E-07 1.2E-11 89.4 12.8 51 259-311 117-167 (250)
123 PRK13795 hypothetical protein; 98.6 1.7E-07 3.8E-12 105.0 10.1 159 122-315 125-301 (636)
124 TIGR01934 MenG_MenH_UbiE ubiqu 98.6 3.7E-07 8E-12 87.1 10.9 68 252-321 30-97 (223)
125 smart00828 PKS_MT Methyltransf 98.6 5.9E-07 1.3E-11 86.8 12.3 58 263-321 1-59 (224)
126 COG0293 FtsJ 23S rRNA methylas 98.6 4.8E-07 1E-11 87.8 11.5 53 260-323 44-96 (205)
127 KOG2915 tRNA(1-methyladenosine 98.5 1.1E-06 2.4E-11 88.1 13.5 80 240-321 86-166 (314)
128 PRK15068 tRNA mo(5)U34 methylt 98.5 8.2E-07 1.8E-11 91.8 13.0 66 254-321 115-181 (322)
129 PLN03075 nicotianamine synthas 98.5 1E-06 2.2E-11 90.1 13.3 63 261-323 123-188 (296)
130 PLN02490 MPBQ/MSBQ methyltrans 98.5 6.2E-07 1.3E-11 93.4 11.1 58 260-321 112-169 (340)
131 PLN02672 methionine S-methyltr 98.5 6.1E-07 1.3E-11 105.0 11.7 49 262-311 119-167 (1082)
132 PLN02589 caffeoyl-CoA O-methyl 98.5 2.2E-06 4.7E-11 85.7 13.8 65 262-326 80-145 (247)
133 TIGR00452 methyltransferase, p 98.5 2.2E-06 4.7E-11 88.5 13.8 47 256-304 116-162 (314)
134 smart00650 rADc Ribosomal RNA 98.5 1.6E-06 3.5E-11 80.9 11.7 65 254-323 6-70 (169)
135 KOG2904 Predicted methyltransf 98.5 1.7E-06 3.7E-11 86.9 12.2 60 261-321 148-208 (328)
136 PF09445 Methyltransf_15: RNA 98.5 7.5E-07 1.6E-11 83.7 9.3 60 263-325 1-61 (163)
137 PRK04457 spermidine synthase; 98.5 3.2E-06 6.9E-11 85.0 14.4 65 260-325 65-130 (262)
138 COG2263 Predicted RNA methylas 98.5 2.8E-06 6E-11 81.4 13.1 67 254-323 38-104 (198)
139 TIGR01983 UbiG ubiquinone bios 98.5 2.7E-06 5.8E-11 82.0 13.4 62 259-323 43-104 (224)
140 PRK05134 bifunctional 3-demeth 98.4 3.1E-06 6.8E-11 82.4 13.7 66 252-321 39-104 (233)
141 COG2521 Predicted archaeal met 98.4 6.6E-07 1.4E-11 88.1 8.7 65 254-324 127-197 (287)
142 PRK13534 7-cyano-7-deazaguanin 98.4 2.2E-07 4.7E-12 103.9 6.0 72 123-226 563-634 (639)
143 PRK00050 16S rRNA m(4)C1402 me 98.4 7.5E-07 1.6E-11 91.2 9.1 71 253-325 11-81 (296)
144 TIGR02072 BioC biotin biosynth 98.4 1.7E-06 3.7E-11 83.2 11.1 57 260-321 33-89 (240)
145 TIGR02716 C20_methyl_CrtF C-20 98.4 3.7E-06 8E-11 85.7 13.7 70 252-323 140-210 (306)
146 PLN02336 phosphoethanolamine N 98.4 3.2E-06 6.9E-11 91.3 13.9 68 249-321 25-92 (475)
147 KOG1271 Methyltransferases [Ge 98.4 8.5E-07 1.8E-11 84.4 8.1 60 263-323 69-129 (227)
148 KOG1663 O-methyltransferase [S 98.4 3.7E-06 8.1E-11 82.6 12.5 65 261-325 73-138 (237)
149 PRK13794 hypothetical protein; 98.4 1.1E-06 2.4E-11 95.5 9.6 163 122-320 123-310 (479)
150 TIGR03438 probable methyltrans 98.4 2.5E-06 5.5E-11 87.2 11.0 93 228-323 33-126 (301)
151 TIGR00417 speE spermidine synt 98.4 7.5E-06 1.6E-10 82.4 14.2 65 258-324 70-138 (270)
152 TIGR02021 BchM-ChlM magnesium 98.4 6.2E-06 1.3E-10 79.8 13.1 60 259-321 53-113 (219)
153 COG2264 PrmA Ribosomal protein 98.3 3.8E-06 8.3E-11 85.9 11.8 63 249-313 148-212 (300)
154 PRK11088 rrmA 23S rRNA methylt 98.3 2.9E-06 6.2E-11 85.3 9.9 57 260-321 84-142 (272)
155 PF03848 TehB: Tellurite resis 98.3 3.2E-06 6.9E-11 81.5 9.5 70 247-321 17-86 (192)
156 PF02384 N6_Mtase: N-6 DNA Met 98.3 9.8E-07 2.1E-11 89.9 6.2 71 240-310 25-101 (311)
157 PF02390 Methyltransf_4: Putat 98.3 2.4E-06 5.2E-11 82.3 8.2 61 264-325 20-80 (195)
158 PF08242 Methyltransf_12: Meth 98.3 2.6E-07 5.7E-12 77.9 1.0 52 266-318 1-52 (99)
159 PRK00811 spermidine synthase; 98.2 1.1E-05 2.5E-10 81.9 12.6 64 261-325 76-144 (283)
160 smart00138 MeTrc Methyltransfe 98.2 6.9E-06 1.5E-10 82.6 10.3 46 260-305 98-151 (264)
161 PF06325 PrmA: Ribosomal prote 98.2 5.7E-06 1.2E-10 84.7 9.6 64 248-313 146-211 (295)
162 TIGR03840 TMPT_Se_Te thiopurin 98.2 1.2E-05 2.7E-10 78.5 11.5 59 247-311 17-78 (213)
163 PF05401 NodS: Nodulation prot 98.2 7.8E-06 1.7E-10 79.0 9.3 65 252-321 34-98 (201)
164 PF13489 Methyltransf_23: Meth 98.2 5.1E-06 1.1E-10 74.9 7.4 49 250-301 10-59 (161)
165 PRK10742 putative methyltransf 98.2 4E-05 8.7E-10 76.6 14.0 72 251-325 76-158 (250)
166 PF01269 Fibrillarin: Fibrilla 98.1 1.6E-05 3.5E-10 78.1 10.8 65 257-323 69-133 (229)
167 PRK01581 speE spermidine synth 98.1 2E-05 4.3E-10 82.8 12.2 67 257-325 147-220 (374)
168 COG0220 Predicted S-adenosylme 98.1 1.4E-05 3E-10 79.0 10.3 62 263-325 50-111 (227)
169 PRK03612 spermidine synthase; 98.1 1.7E-05 3.7E-10 87.1 11.5 64 260-324 296-366 (521)
170 KOG1270 Methyltransferases [Co 98.1 1.8E-05 3.9E-10 79.2 9.8 43 260-305 88-130 (282)
171 PRK06202 hypothetical protein; 98.1 2E-05 4.3E-10 77.1 9.9 55 254-308 53-110 (232)
172 PLN02366 spermidine synthase 98.1 4.3E-05 9.2E-10 78.8 12.5 64 261-325 91-158 (308)
173 PRK05785 hypothetical protein; 98.1 1.7E-05 3.6E-10 78.0 9.2 42 261-304 51-92 (226)
174 TIGR03587 Pse_Me-ase pseudamin 98.0 7.1E-05 1.5E-09 72.6 12.4 46 259-305 41-86 (204)
175 PTZ00338 dimethyladenosine tra 97.9 4.7E-05 1E-09 78.0 10.2 68 253-323 28-96 (294)
176 KOG2187 tRNA uracil-5-methyltr 97.9 3.7E-05 8E-10 83.0 9.4 78 243-323 359-442 (534)
177 smart00359 PUA Putative RNA-bi 97.9 1.7E-05 3.6E-10 64.2 5.3 70 125-226 2-73 (77)
178 PRK07580 Mg-protoporphyrin IX 97.9 0.00014 3E-09 70.3 12.4 59 259-320 61-120 (230)
179 COG4106 Tam Trans-aconitate me 97.9 6.6E-05 1.4E-09 73.5 9.7 57 259-321 28-84 (257)
180 KOG0024 Sorbitol dehydrogenase 97.9 0.00033 7.2E-09 72.2 14.7 84 227-315 135-219 (354)
181 PF07021 MetW: Methionine bios 97.9 0.00014 3.1E-09 70.1 11.3 56 259-323 11-66 (193)
182 PRK14896 ksgA 16S ribosomal RN 97.9 6.2E-05 1.4E-09 75.3 9.4 66 253-323 21-86 (258)
183 PRK13255 thiopurine S-methyltr 97.9 0.00017 3.8E-09 70.7 12.2 49 258-312 34-82 (218)
184 COG5270 PUA domain (predicted 97.8 2.1E-05 4.5E-10 74.6 4.9 72 123-226 128-199 (202)
185 PLN02585 magnesium protoporphy 97.8 8.7E-05 1.9E-09 76.8 9.7 47 261-310 144-190 (315)
186 PF03291 Pox_MCEL: mRNA cappin 97.8 6.2E-05 1.3E-09 78.4 8.5 47 261-309 62-108 (331)
187 PRK11727 23S rRNA mA1618 methy 97.8 0.00022 4.8E-09 74.0 12.5 57 261-318 114-172 (321)
188 TIGR02987 met_A_Alw26 type II 97.8 0.00018 3.8E-09 79.1 12.2 50 261-310 31-87 (524)
189 COG0116 Predicted N6-adenine-s 97.8 0.0004 8.7E-09 73.2 13.8 69 255-323 185-292 (381)
190 PRK00274 ksgA 16S ribosomal RN 97.8 7.3E-05 1.6E-09 75.5 8.1 65 253-323 34-98 (272)
191 PRK01544 bifunctional N5-gluta 97.8 0.00011 2.5E-09 80.5 10.1 61 261-322 347-407 (506)
192 KOG4589 Cell division protein 97.8 0.00022 4.8E-09 68.4 10.5 37 260-296 68-104 (232)
193 TIGR00006 S-adenosyl-methyltra 97.7 0.0002 4.4E-09 73.7 10.9 70 253-324 12-81 (305)
194 PF02527 GidB: rRNA small subu 97.7 0.0003 6.5E-09 67.5 10.7 59 264-323 51-109 (184)
195 PF01861 DUF43: Protein of unk 97.6 0.00053 1.2E-08 68.2 11.2 61 261-324 44-104 (243)
196 KOG1098 Putative SAM-dependent 97.6 0.00014 3E-09 79.9 7.2 40 260-299 43-82 (780)
197 PF12147 Methyltransf_20: Puta 97.5 0.0016 3.5E-08 66.5 13.0 94 231-324 105-200 (311)
198 KOG1099 SAM-dependent methyltr 97.5 0.00037 8.1E-09 68.8 7.7 50 263-323 43-100 (294)
199 PF08003 Methyltransf_9: Prote 97.4 0.0021 4.6E-08 66.1 13.2 49 260-310 114-162 (315)
200 KOG1596 Fibrillarin and relate 97.4 0.00025 5.4E-09 70.5 6.0 64 258-323 153-216 (317)
201 TIGR00755 ksgA dimethyladenosi 97.4 0.00064 1.4E-08 67.7 9.1 66 253-323 21-86 (253)
202 PRK11783 rlmL 23S rRNA m(2)G24 97.4 0.0026 5.7E-08 72.5 14.9 64 260-323 189-294 (702)
203 KOG3420 Predicted RNA methylas 97.4 0.00014 3E-09 67.3 3.7 59 260-321 47-105 (185)
204 KOG3191 Predicted N6-DNA-methy 97.4 0.0035 7.6E-08 60.1 13.0 62 262-324 44-105 (209)
205 PLN02823 spermine synthase 97.4 0.0019 4.2E-08 67.5 12.5 67 257-325 100-170 (336)
206 KOG2899 Predicted methyltransf 97.4 0.00045 9.8E-09 68.7 7.3 45 262-307 59-103 (288)
207 COG0357 GidB Predicted S-adeno 97.3 0.0013 2.9E-08 64.6 10.0 61 262-323 68-128 (215)
208 TIGR02081 metW methionine bios 97.3 0.0015 3.4E-08 62.1 9.6 53 260-321 12-64 (194)
209 COG1889 NOP1 Fibrillarin-like 97.2 0.003 6.4E-08 61.5 11.0 63 258-323 73-135 (231)
210 TIGR00432 arcsn_tRNA_tgt tRNA- 97.2 0.00038 8.3E-09 76.8 5.2 73 122-226 465-537 (540)
211 PF02005 TRM: N2,N2-dimethylgu 97.2 0.0009 1.9E-08 71.0 7.8 63 262-324 50-114 (377)
212 PRK13256 thiopurine S-methyltr 97.2 0.0036 7.9E-08 62.0 11.1 44 258-304 40-83 (226)
213 PRK05429 gamma-glutamyl kinase 97.2 0.00047 1E-08 72.9 5.1 63 122-216 279-342 (372)
214 KOG1253 tRNA methyltransferase 97.1 0.00077 1.7E-08 72.8 6.0 65 259-323 107-172 (525)
215 KOG1975 mRNA cap methyltransfe 97.1 0.0011 2.3E-08 68.5 6.7 62 260-323 116-183 (389)
216 PF13578 Methyltransf_24: Meth 97.0 0.0005 1.1E-08 58.8 3.0 58 266-324 1-61 (106)
217 PF01564 Spermine_synth: Sperm 97.0 0.0073 1.6E-07 60.4 11.3 70 254-325 70-143 (246)
218 PF05185 PRMT5: PRMT5 arginine 96.9 0.00075 1.6E-08 73.1 4.4 62 262-323 187-252 (448)
219 COG0286 HsdM Type I restrictio 96.9 0.0021 4.7E-08 70.3 7.8 72 240-311 165-239 (489)
220 PF01795 Methyltransf_5: MraW 96.9 0.0015 3.2E-08 67.5 6.0 68 253-322 12-79 (310)
221 PLN02232 ubiquinone biosynthes 96.9 0.0031 6.6E-08 58.6 7.4 34 290-323 1-37 (160)
222 COG0030 KsgA Dimethyladenosine 96.9 0.0052 1.1E-07 62.0 9.3 67 253-324 22-88 (259)
223 KOG2523 Predicted RNA-binding 96.8 0.00048 1E-08 64.3 1.6 96 100-226 66-168 (181)
224 KOG1661 Protein-L-isoaspartate 96.8 0.0057 1.2E-07 59.9 9.0 64 245-308 62-130 (237)
225 KOG2671 Putative RNA methylase 96.8 0.0034 7.4E-08 65.3 7.6 60 250-312 197-263 (421)
226 KOG1541 Predicted protein carb 96.8 0.006 1.3E-07 60.2 8.8 61 240-304 27-90 (270)
227 PRK04270 H/ACA RNA-protein com 96.8 0.0018 4E-08 66.6 5.5 74 122-227 224-297 (300)
228 KOG2361 Predicted methyltransf 96.8 0.0011 2.4E-08 65.9 3.7 68 239-309 52-120 (264)
229 COG0275 Predicted S-adenosylme 96.7 0.01 2.2E-07 60.9 10.4 69 253-322 15-83 (314)
230 PRK11760 putative 23S rRNA C24 96.7 0.0046 9.9E-08 64.7 8.0 55 259-323 209-263 (357)
231 PF05219 DREV: DREV methyltran 96.7 0.011 2.4E-07 59.6 10.3 46 261-313 94-139 (265)
232 PF00891 Methyltransf_2: O-met 96.6 0.026 5.7E-07 55.3 11.8 61 254-322 93-153 (241)
233 KOG2730 Methylase [General fun 96.5 0.0064 1.4E-07 60.0 6.8 62 261-325 94-156 (263)
234 TIGR00425 CBF5 rRNA pseudourid 96.5 0.0035 7.5E-08 65.2 5.4 74 122-227 236-309 (322)
235 PF06080 DUF938: Protein of un 96.5 0.019 4.1E-07 56.1 9.9 61 260-321 24-85 (204)
236 PF10294 Methyltransf_16: Puta 96.4 0.0086 1.9E-07 56.5 7.2 50 259-310 43-92 (173)
237 TIGR00478 tly hemolysin TlyA f 96.4 0.0029 6.4E-08 62.7 4.1 40 260-301 74-113 (228)
238 TIGR01027 proB glutamate 5-kin 96.3 0.0043 9.4E-08 65.5 4.9 63 122-216 271-334 (363)
239 COG3963 Phospholipid N-methylt 96.3 0.072 1.6E-06 50.7 12.4 65 254-323 41-105 (194)
240 COG1370 Prefoldin, molecular c 96.2 0.0089 1.9E-07 55.3 5.8 74 121-226 78-151 (155)
241 COG1064 AdhP Zn-dependent alco 96.2 0.02 4.4E-07 59.9 9.1 51 257-313 162-213 (339)
242 COG0421 SpeE Spermidine syntha 96.2 0.08 1.7E-06 54.2 13.0 69 255-325 71-143 (282)
243 COG1867 TRM1 N2,N2-dimethylgua 96.2 0.037 7.9E-07 58.3 10.6 74 250-324 41-114 (380)
244 COG3897 Predicted methyltransf 96.1 0.0072 1.6E-07 58.6 4.7 57 261-320 79-135 (218)
245 TIGR01444 fkbM_fam methyltrans 96.1 0.021 4.6E-07 51.0 7.6 57 264-321 1-57 (143)
246 COG4976 Predicted methyltransf 96.1 0.013 2.7E-07 58.3 6.3 43 257-302 121-163 (287)
247 PF00398 RrnaAD: Ribosomal RNA 96.0 0.015 3.3E-07 58.4 7.0 67 253-324 22-88 (262)
248 TIGR03439 methyl_EasF probable 96.0 0.07 1.5E-06 55.6 11.9 93 229-324 47-144 (319)
249 COG1549 Queuine tRNA-ribosyltr 95.9 0.0063 1.4E-07 65.8 3.9 182 4-227 295-516 (519)
250 KOG1499 Protein arginine N-met 95.8 0.048 1E-06 57.0 9.5 57 261-320 60-117 (346)
251 PRK10611 chemotaxis methyltran 95.6 0.066 1.4E-06 54.9 9.6 42 263-304 117-165 (287)
252 COG4076 Predicted RNA methylas 95.6 0.022 4.9E-07 55.1 5.6 58 263-323 34-91 (252)
253 PF05724 TPMT: Thiopurine S-me 95.5 0.043 9.4E-07 54.0 7.7 43 257-302 33-75 (218)
254 PF13679 Methyltransf_32: Meth 95.5 0.041 8.9E-07 50.0 6.9 52 259-310 23-77 (141)
255 COG0500 SmtA SAM-dependent met 95.5 0.24 5.3E-06 40.7 11.0 38 265-303 52-89 (257)
256 PF01234 NNMT_PNMT_TEMT: NNMT/ 95.5 0.031 6.7E-07 56.4 6.5 47 260-309 55-102 (256)
257 cd00315 Cyt_C5_DNA_methylase C 95.4 0.027 5.9E-07 57.0 5.9 41 264-306 2-42 (275)
258 PF04445 SAM_MT: Putative SAM- 95.4 0.06 1.3E-06 53.7 8.1 49 252-303 64-114 (234)
259 KOG3010 Methyltransferase [Gen 95.4 0.037 8.1E-07 55.3 6.5 54 248-304 19-73 (261)
260 TIGR00497 hsdM type I restrict 95.3 0.076 1.6E-06 58.3 9.4 66 240-305 194-264 (501)
261 KOG2782 Putative SAM dependent 94.8 0.029 6.3E-07 55.4 3.8 47 253-300 35-81 (303)
262 KOG0820 Ribosomal RNA adenine 94.6 0.14 3.1E-06 52.1 8.2 65 256-323 53-118 (315)
263 PRK04148 hypothetical protein; 94.3 0.15 3.3E-06 46.7 7.2 54 260-323 15-69 (134)
264 KOG4300 Predicted methyltransf 94.2 0.28 6E-06 48.4 9.1 55 264-320 79-134 (252)
265 COG1189 Predicted rRNA methyla 94.2 0.31 6.6E-06 48.8 9.6 37 261-299 79-115 (245)
266 PF01739 CheR: CheR methyltran 94.2 0.088 1.9E-06 51.1 5.6 42 262-303 32-81 (196)
267 PF10354 DUF2431: Domain of un 93.8 1.2 2.6E-05 42.0 12.5 59 422-487 72-130 (166)
268 PRK11524 putative methyltransf 93.7 0.23 5E-06 50.5 8.0 55 422-481 24-79 (284)
269 PF00107 ADH_zinc_N: Zinc-bind 93.7 0.13 2.8E-06 45.0 5.4 35 273-313 3-37 (130)
270 COG1063 Tdh Threonine dehydrog 93.5 0.67 1.5E-05 48.5 11.3 44 258-302 165-209 (350)
271 COG1568 Predicted methyltransf 93.4 0.46 9.9E-06 48.7 9.3 60 262-323 153-212 (354)
272 PF06962 rRNA_methylase: Putat 93.3 0.29 6.3E-06 45.2 7.1 31 288-318 1-32 (140)
273 KOG1227 Putative methyltransfe 93.2 0.053 1.2E-06 55.8 2.4 49 262-312 195-244 (351)
274 PF09243 Rsm22: Mitochondrial 93.1 0.36 7.7E-06 49.1 8.2 47 263-309 35-81 (274)
275 PRK00536 speE spermidine synth 92.8 1.3 2.8E-05 45.0 11.7 52 253-308 65-116 (262)
276 PRK13402 gamma-glutamyl kinase 92.7 0.15 3.3E-06 54.0 5.0 63 122-216 275-338 (368)
277 PRK09880 L-idonate 5-dehydroge 92.4 1.5 3.3E-05 45.0 11.8 50 258-313 166-217 (343)
278 KOG1500 Protein arginine N-met 92.3 0.8 1.7E-05 48.1 9.4 55 261-318 177-232 (517)
279 PRK13699 putative methylase; P 92.1 0.37 8.1E-06 47.6 6.7 60 421-486 16-75 (227)
280 TIGR02822 adh_fam_2 zinc-bindi 92.0 1.2 2.7E-05 45.6 10.7 52 255-312 159-211 (329)
281 PF08123 DOT1: Histone methyla 91.6 1.4 3.1E-05 43.0 9.9 66 239-307 22-87 (205)
282 PF05148 Methyltransf_8: Hypot 91.4 0.59 1.3E-05 46.1 7.0 40 253-296 63-103 (219)
283 PF04816 DUF633: Family of unk 91.1 2.2 4.7E-05 41.8 10.7 60 265-325 1-61 (205)
284 PF00145 DNA_methylase: C-5 cy 91.0 1.1 2.4E-05 45.0 8.9 51 264-323 2-52 (335)
285 COG4798 Predicted methyltransf 91.0 0.6 1.3E-05 45.7 6.5 42 256-297 43-84 (238)
286 cd08283 FDH_like_1 Glutathione 90.9 1.7 3.7E-05 45.6 10.5 49 255-304 178-227 (386)
287 PF01555 N6_N4_Mtase: DNA meth 90.8 0.47 1E-05 45.0 5.6 41 260-303 190-230 (231)
288 PF05891 Methyltransf_PK: AdoM 90.8 0.58 1.3E-05 46.3 6.3 43 261-305 55-97 (218)
289 COG1352 CheR Methylase of chem 90.6 1.1 2.3E-05 45.8 8.3 42 262-303 97-146 (268)
290 TIGR03451 mycoS_dep_FDH mycoth 90.6 2.9 6.2E-05 43.3 11.7 51 256-312 171-223 (358)
291 KOG1709 Guanidinoacetate methy 90.4 2.7 5.8E-05 41.9 10.4 45 260-306 100-144 (271)
292 PRK12939 short chain dehydroge 90.2 5.2 0.00011 38.3 12.4 60 262-323 7-67 (250)
293 PF11599 AviRa: RRNA methyltra 89.5 0.8 1.7E-05 45.4 6.1 75 229-309 22-100 (246)
294 PRK11524 putative methyltransf 89.3 0.78 1.7E-05 46.7 6.1 44 260-307 207-251 (284)
295 PF04989 CmcI: Cephalosporin h 89.1 0.94 2E-05 44.5 6.3 81 241-323 11-96 (206)
296 PRK07102 short chain dehydroge 89.0 9.4 0.0002 36.7 13.3 59 264-323 3-62 (243)
297 TIGR03366 HpnZ_proposed putati 88.8 5.1 0.00011 40.0 11.5 51 256-312 115-167 (280)
298 TIGR02825 B4_12hDH leukotriene 88.8 4.4 9.6E-05 41.0 11.2 54 255-313 132-186 (325)
299 cd08239 THR_DH_like L-threonin 88.6 4.9 0.00011 40.9 11.5 53 254-312 156-210 (339)
300 KOG2078 tRNA modification enzy 88.5 0.41 8.8E-06 51.5 3.5 64 260-326 248-313 (495)
301 cd08281 liver_ADH_like1 Zinc-d 88.3 3 6.5E-05 43.4 9.8 51 256-312 186-238 (371)
302 PRK10309 galactitol-1-phosphat 88.0 6.5 0.00014 40.2 12.0 50 256-312 155-207 (347)
303 PF03141 Methyltransf_29: Puta 87.8 0.64 1.4E-05 51.0 4.6 48 420-486 176-223 (506)
304 PRK05786 fabG 3-ketoacyl-(acyl 87.6 11 0.00025 35.8 12.8 59 262-323 5-64 (238)
305 PRK07533 enoyl-(acyl carrier p 87.6 12 0.00025 36.8 13.1 61 261-323 9-71 (258)
306 TIGR03201 dearomat_had 6-hydro 87.6 6.8 0.00015 40.3 11.9 50 257-312 162-212 (349)
307 PRK06914 short chain dehydroge 87.3 9.6 0.00021 37.5 12.4 61 262-323 3-65 (280)
308 PRK12429 3-hydroxybutyrate deh 87.2 11 0.00023 36.3 12.4 60 262-323 4-64 (258)
309 PF03059 NAS: Nicotianamine sy 87.1 3.5 7.5E-05 42.3 9.2 61 263-323 122-185 (276)
310 PRK13699 putative methylase; P 87.0 1.5 3.2E-05 43.4 6.3 48 259-309 161-208 (227)
311 PRK07326 short chain dehydroge 86.3 12 0.00026 35.6 12.1 59 262-323 6-65 (237)
312 KOG1197 Predicted quinone oxid 85.8 6.2 0.00013 40.4 9.9 78 243-325 127-207 (336)
313 cd08230 glucose_DH Glucose deh 85.5 5.6 0.00012 41.0 10.0 46 259-312 170-221 (355)
314 PRK07576 short chain dehydroge 85.5 18 0.00038 35.6 13.2 60 261-322 8-68 (264)
315 cd08294 leukotriene_B4_DH_like 85.3 7.4 0.00016 39.0 10.5 52 255-313 137-191 (329)
316 PRK09424 pntA NAD(P) transhydr 85.2 7.7 0.00017 43.1 11.3 49 258-312 161-210 (509)
317 PRK07523 gluconate 5-dehydroge 85.2 18 0.0004 35.0 12.9 61 261-323 9-70 (255)
318 PRK07677 short chain dehydroge 85.1 14 0.00031 35.7 12.2 60 262-323 1-61 (252)
319 PHA01634 hypothetical protein 85.0 2.3 5E-05 39.1 5.9 50 257-309 25-74 (156)
320 PRK08945 putative oxoacyl-(acy 84.9 23 0.00051 34.1 13.5 63 258-321 8-71 (247)
321 PRK06101 short chain dehydroge 84.9 21 0.00045 34.4 13.1 51 268-323 6-57 (240)
322 PRK08594 enoyl-(acyl carrier p 84.3 20 0.00044 35.2 13.0 63 261-323 6-70 (257)
323 PRK01747 mnmC bifunctional tRN 84.2 7.6 0.00017 44.1 11.1 45 262-306 58-113 (662)
324 PRK07831 short chain dehydroge 84.2 21 0.00046 34.8 12.9 63 261-323 16-80 (262)
325 PLN02740 Alcohol dehydrogenase 84.1 14 0.0003 38.8 12.2 51 256-312 193-245 (381)
326 PF05971 Methyltransf_10: Prot 83.7 4.5 9.7E-05 42.0 8.1 57 262-319 103-161 (299)
327 cd08295 double_bond_reductase_ 83.6 13 0.00029 37.8 11.6 54 256-313 146-200 (338)
328 PRK06949 short chain dehydroge 83.4 22 0.00047 34.3 12.6 61 261-323 8-69 (258)
329 PRK06139 short chain dehydroge 83.3 21 0.00046 36.9 13.1 60 262-323 7-67 (330)
330 PLN02827 Alcohol dehydrogenase 83.1 11 0.00023 39.6 11.0 51 256-312 188-240 (378)
331 PRK12826 3-ketoacyl-(acyl-carr 83.0 28 0.00061 33.1 13.1 60 262-323 6-66 (251)
332 PRK05867 short chain dehydroge 82.7 10 0.00023 36.7 10.1 60 262-323 9-69 (253)
333 KOG0023 Alcohol dehydrogenase, 82.7 10 0.00023 39.8 10.2 51 258-313 178-229 (360)
334 KOG1331 Predicted methyltransf 82.4 4.3 9.3E-05 41.8 7.3 41 252-297 35-76 (293)
335 PRK08324 short chain dehydroge 82.4 15 0.00032 42.0 12.5 60 261-323 421-481 (681)
336 COG0263 ProB Glutamate 5-kinas 82.3 1.6 3.5E-05 46.0 4.3 41 123-163 279-320 (369)
337 PRK07666 fabG 3-ketoacyl-(acyl 82.3 35 0.00076 32.6 13.4 60 262-323 7-67 (239)
338 PRK08085 gluconate 5-dehydroge 82.0 22 0.00047 34.4 12.0 59 262-322 9-68 (254)
339 KOG3115 Methyltransferase-like 81.8 4.3 9.3E-05 40.2 6.7 60 263-323 62-128 (249)
340 PRK08063 enoyl-(acyl carrier p 81.5 31 0.00067 33.1 12.8 60 262-323 4-65 (250)
341 KOG1269 SAM-dependent methyltr 81.5 2.8 6E-05 44.6 5.8 57 254-312 103-159 (364)
342 PRK08251 short chain dehydroge 81.4 38 0.00083 32.4 13.4 61 262-323 2-64 (248)
343 PRK13394 3-hydroxybutyrate deh 81.1 29 0.00063 33.4 12.5 60 262-323 7-67 (262)
344 PRK12937 short chain dehydroge 81.1 33 0.00072 32.7 12.8 60 262-323 5-66 (245)
345 PRK08643 acetoin reductase; Va 80.9 37 0.00079 32.8 13.1 59 263-323 3-62 (256)
346 PF10237 N6-adenineMlase: Prob 80.9 2.4 5.3E-05 40.0 4.6 53 242-296 5-58 (162)
347 PRK06124 gluconate 5-dehydroge 80.5 45 0.00097 32.2 13.6 61 261-323 10-71 (256)
348 PRK06197 short chain dehydroge 80.4 28 0.0006 35.0 12.5 62 261-323 15-78 (306)
349 cd08254 hydroxyacyl_CoA_DH 6-h 80.2 16 0.00035 36.5 10.7 50 257-312 161-211 (338)
350 PRK07890 short chain dehydroge 80.2 40 0.00086 32.5 13.1 60 262-323 5-65 (258)
351 PRK08415 enoyl-(acyl carrier p 79.9 42 0.00092 33.5 13.5 60 262-323 5-66 (274)
352 PF00106 adh_short: short chai 79.7 35 0.00076 30.4 11.8 54 269-323 6-63 (167)
353 PRK05599 hypothetical protein; 79.6 33 0.00072 33.3 12.4 56 268-323 5-60 (246)
354 PRK08278 short chain dehydroge 79.6 24 0.00053 34.8 11.6 60 262-323 6-73 (273)
355 PRK09242 tropinone reductase; 79.6 43 0.00093 32.4 13.1 60 262-322 9-70 (257)
356 PLN03154 putative allyl alcoho 79.6 18 0.00039 37.4 11.1 52 257-313 154-207 (348)
357 PRK08339 short chain dehydroge 79.5 48 0.001 32.6 13.6 61 262-323 8-69 (263)
358 PRK06505 enoyl-(acyl carrier p 79.4 39 0.00084 33.6 13.0 60 262-323 7-68 (271)
359 PRK12829 short chain dehydroge 79.3 28 0.00062 33.6 11.8 60 260-323 9-69 (264)
360 cd08300 alcohol_DH_class_III c 79.3 35 0.00077 35.3 13.2 51 256-312 181-233 (368)
361 PRK08557 hypothetical protein; 79.1 7.6 0.00017 42.1 8.3 155 123-321 77-244 (417)
362 TIGR00675 dcm DNA-methyltransf 78.8 4.1 8.8E-05 42.2 5.9 40 265-306 1-40 (315)
363 PF01555 N6_N4_Mtase: DNA meth 78.8 1.6 3.4E-05 41.3 2.7 53 426-481 1-55 (231)
364 COG4262 Predicted spermidine s 78.5 24 0.00051 38.0 11.3 43 260-305 288-332 (508)
365 PRK06181 short chain dehydroge 78.3 47 0.001 32.2 13.0 58 264-323 3-61 (263)
366 PRK07063 short chain dehydroge 78.0 45 0.00099 32.3 12.8 61 262-323 7-69 (260)
367 PRK06196 oxidoreductase; Provi 77.9 31 0.00067 35.0 12.0 57 261-323 25-82 (315)
368 PRK07478 short chain dehydroge 77.7 57 0.0012 31.5 13.4 59 262-322 6-65 (254)
369 PRK07832 short chain dehydroge 77.6 37 0.00079 33.4 12.1 54 269-322 6-60 (272)
370 PRK06603 enoyl-(acyl carrier p 77.5 60 0.0013 31.9 13.6 60 262-323 8-69 (260)
371 PRK08159 enoyl-(acyl carrier p 77.5 56 0.0012 32.5 13.5 60 262-323 10-71 (272)
372 PRK06701 short chain dehydroge 77.2 45 0.00098 33.5 12.9 61 261-323 45-107 (290)
373 PRK06194 hypothetical protein; 77.1 37 0.00079 33.5 12.0 60 262-323 6-66 (287)
374 PRK05653 fabG 3-ketoacyl-(acyl 77.0 46 0.001 31.4 12.3 60 262-323 5-65 (246)
375 PRK08213 gluconate 5-dehydroge 76.9 50 0.0011 32.0 12.7 60 261-322 11-71 (259)
376 COG1062 AdhC Zn-dependent alco 76.8 6.2 0.00013 41.7 6.5 57 253-313 177-233 (366)
377 PRK07109 short chain dehydroge 76.7 41 0.00088 34.7 12.6 60 262-323 8-68 (334)
378 cd08293 PTGR2 Prostaglandin re 76.3 22 0.00047 36.1 10.4 51 258-313 149-204 (345)
379 PRK07806 short chain dehydroge 75.9 27 0.0006 33.4 10.5 60 262-323 6-67 (248)
380 PRK05717 oxidoreductase; Valid 75.5 45 0.00097 32.3 11.9 57 262-323 10-67 (255)
381 PRK07067 sorbitol dehydrogenas 74.7 47 0.001 32.1 11.9 57 262-323 6-63 (257)
382 PRK05872 short chain dehydroge 74.7 48 0.001 33.3 12.2 58 261-322 8-67 (296)
383 COG5459 Predicted rRNA methyla 74.4 3.9 8.5E-05 43.4 4.3 52 244-296 91-148 (484)
384 PRK07984 enoyl-(acyl carrier p 74.3 66 0.0014 31.9 13.0 59 262-323 6-67 (262)
385 PRK05875 short chain dehydroge 74.0 75 0.0016 31.1 13.3 61 262-323 7-69 (276)
386 PRK07231 fabG 3-ketoacyl-(acyl 73.6 47 0.001 31.7 11.5 59 262-323 5-64 (251)
387 KOG0022 Alcohol dehydrogenase, 73.5 7.7 0.00017 40.7 6.1 57 252-312 183-239 (375)
388 PRK09291 short chain dehydroge 73.2 61 0.0013 31.1 12.2 59 263-323 3-62 (257)
389 PRK07062 short chain dehydroge 73.2 62 0.0014 31.4 12.4 61 262-323 8-70 (265)
390 PRK06198 short chain dehydroge 73.1 52 0.0011 31.8 11.7 59 262-322 6-66 (260)
391 PRK08267 short chain dehydroge 73.1 42 0.0009 32.6 11.1 52 269-323 7-59 (260)
392 TIGR02819 fdhA_non_GSH formald 72.9 40 0.00086 35.8 11.6 49 257-312 181-232 (393)
393 PRK05876 short chain dehydroge 72.5 63 0.0014 32.1 12.4 60 262-323 6-66 (275)
394 TIGR03206 benzo_BadH 2-hydroxy 72.4 91 0.002 29.7 13.2 60 262-323 3-63 (250)
395 PRK05855 short chain dehydroge 72.2 36 0.00077 37.0 11.4 60 262-323 315-375 (582)
396 COG0604 Qor NADPH:quinone redu 72.1 44 0.00095 34.8 11.5 52 257-313 138-190 (326)
397 PF13561 adh_short_C2: Enoyl-( 72.0 14 0.00031 35.6 7.5 49 272-323 5-55 (241)
398 PRK08589 short chain dehydroge 71.9 79 0.0017 31.1 12.9 59 262-323 6-65 (272)
399 PRK06079 enoyl-(acyl carrier p 71.5 63 0.0014 31.5 12.0 58 262-323 7-66 (252)
400 PRK06940 short chain dehydroge 71.4 99 0.0022 30.6 13.5 50 273-323 11-60 (275)
401 PRK07454 short chain dehydroge 71.3 82 0.0018 30.0 12.6 60 262-323 6-66 (241)
402 PRK06182 short chain dehydroge 71.3 54 0.0012 32.1 11.5 54 262-323 3-57 (273)
403 PRK05650 short chain dehydroge 71.2 81 0.0017 30.9 12.7 58 264-323 2-60 (270)
404 COG2933 Predicted SAM-dependen 70.4 6.6 0.00014 40.3 4.7 55 260-324 210-264 (358)
405 PF06859 Bin3: Bicoid-interact 70.4 4.5 9.8E-05 36.0 3.2 23 458-480 20-42 (110)
406 cd08243 quinone_oxidoreductase 70.2 48 0.0011 32.6 11.0 49 258-312 139-189 (320)
407 PRK06180 short chain dehydroge 69.7 87 0.0019 30.9 12.7 57 262-323 4-61 (277)
408 PRK07060 short chain dehydroge 69.6 80 0.0017 30.0 12.1 41 261-302 8-49 (245)
409 cd08231 MDR_TM0436_like Hypoth 69.5 50 0.0011 33.8 11.3 48 260-313 176-225 (361)
410 PRK07775 short chain dehydroge 69.5 93 0.002 30.7 12.8 58 264-323 12-70 (274)
411 COG0270 Dcm Site-specific DNA 69.4 13 0.00027 38.8 6.8 43 263-307 4-46 (328)
412 PRK06172 short chain dehydroge 69.3 1.1E+02 0.0024 29.4 13.4 60 262-323 7-67 (253)
413 cd08233 butanediol_DH_like (2R 69.2 46 0.00099 34.0 10.8 52 255-312 166-219 (351)
414 PRK07024 short chain dehydroge 69.1 64 0.0014 31.3 11.4 57 264-323 4-61 (257)
415 PRK05993 short chain dehydroge 69.0 65 0.0014 31.8 11.6 54 262-323 4-58 (277)
416 PRK07774 short chain dehydroge 68.9 81 0.0017 30.1 12.0 60 262-323 6-66 (250)
417 PRK07889 enoyl-(acyl carrier p 68.8 91 0.002 30.5 12.5 61 261-323 6-68 (256)
418 KOG2352 Predicted spermine/spe 68.3 20 0.00043 39.5 8.1 57 264-323 51-107 (482)
419 PRK06935 2-deoxy-D-gluconate 3 67.9 51 0.0011 32.0 10.4 60 261-323 14-74 (258)
420 TIGR01963 PHB_DH 3-hydroxybuty 67.8 99 0.0021 29.5 12.3 54 269-323 7-61 (255)
421 KOG1562 Spermidine synthase [A 67.7 25 0.00053 36.8 8.2 63 262-325 122-188 (337)
422 PRK08862 short chain dehydroge 67.3 97 0.0021 30.0 12.2 59 262-322 5-64 (227)
423 PRK07985 oxidoreductase; Provi 67.3 1.2E+02 0.0025 30.5 13.2 61 261-323 48-111 (294)
424 PF07669 Eco57I: Eco57I restri 67.2 8.8 0.00019 33.3 4.3 51 425-483 2-52 (106)
425 PRK07097 gluconate 5-dehydroge 66.8 1.1E+02 0.0023 29.9 12.5 61 261-323 9-70 (265)
426 TIGR02632 RhaD_aldol-ADH rhamn 66.8 1.4E+02 0.0029 34.4 14.9 85 238-323 385-476 (676)
427 PRK06128 oxidoreductase; Provi 66.2 1.3E+02 0.0028 30.2 13.2 61 261-323 54-117 (300)
428 PRK06482 short chain dehydroge 66.1 62 0.0013 31.7 10.7 55 264-323 4-59 (276)
429 TIGR02415 23BDH acetoin reduct 65.9 96 0.0021 29.7 11.9 54 269-323 6-60 (254)
430 PRK09072 short chain dehydroge 65.6 94 0.002 30.2 11.8 58 262-322 5-63 (263)
431 PRK06500 short chain dehydroge 65.3 1.2E+02 0.0026 28.9 12.3 55 262-321 6-61 (249)
432 cd08236 sugar_DH NAD(P)-depend 65.3 59 0.0013 32.9 10.7 52 254-311 152-205 (343)
433 PRK12859 3-ketoacyl-(acyl-carr 65.1 1.4E+02 0.003 29.0 13.1 61 261-322 5-78 (256)
434 KOG3201 Uncharacterized conser 65.0 14 0.00031 35.4 5.5 49 261-309 29-77 (201)
435 PRK10538 malonic semialdehyde 64.9 92 0.002 30.0 11.5 51 269-323 6-57 (248)
436 PRK09135 pteridine reductase; 64.4 1.3E+02 0.0028 28.5 13.0 62 261-323 5-68 (249)
437 cd08286 FDH_like_ADH2 formalde 63.6 69 0.0015 32.5 10.8 51 256-312 161-213 (345)
438 PRK05693 short chain dehydroge 63.5 1E+02 0.0022 30.2 11.7 48 268-322 6-54 (274)
439 PRK06841 short chain dehydroge 63.4 1E+02 0.0022 29.6 11.5 57 262-323 15-72 (255)
440 PRK08265 short chain dehydroge 63.0 1.3E+02 0.0028 29.4 12.3 57 262-323 6-63 (261)
441 PRK06484 short chain dehydroge 63.0 1E+02 0.0022 33.5 12.6 57 261-322 268-325 (520)
442 cd08285 NADP_ADH NADP(H)-depen 62.9 94 0.002 31.7 11.7 51 255-312 160-213 (351)
443 TIGR01832 kduD 2-deoxy-D-gluco 62.8 1.2E+02 0.0026 29.0 11.8 59 261-323 4-63 (248)
444 PRK06138 short chain dehydroge 62.2 1.1E+02 0.0024 29.2 11.4 59 262-323 5-64 (252)
445 PRK12742 oxidoreductase; Provi 62.0 1.4E+02 0.0031 28.1 12.8 54 261-321 5-60 (237)
446 PRK12481 2-deoxy-D-gluconate 3 62.0 83 0.0018 30.6 10.6 59 261-323 7-66 (251)
447 cd05279 Zn_ADH1 Liver alcohol 61.8 78 0.0017 32.8 11.0 51 256-312 178-230 (365)
448 cd08278 benzyl_alcohol_DH Benz 61.6 74 0.0016 32.9 10.8 50 256-312 181-233 (365)
449 PRK08261 fabG 3-ketoacyl-(acyl 61.1 1.5E+02 0.0033 31.6 13.4 58 260-322 208-266 (450)
450 KOG3178 Hydroxyindole-O-methyl 60.8 73 0.0016 33.8 10.3 50 250-302 162-215 (342)
451 PRK12744 short chain dehydroge 60.7 1.6E+02 0.0036 28.4 13.0 60 262-323 8-72 (257)
452 PRK07074 short chain dehydroge 60.6 1.3E+02 0.0027 29.1 11.6 56 264-323 4-60 (257)
453 cd08265 Zn_ADH3 Alcohol dehydr 60.1 85 0.0019 32.8 11.0 50 257-312 199-250 (384)
454 PRK07825 short chain dehydroge 60.0 1.7E+02 0.0037 28.5 12.6 55 262-322 5-60 (273)
455 PLN02540 methylenetetrahydrofo 59.9 15 0.00032 41.4 5.4 62 262-323 28-99 (565)
456 PRK05884 short chain dehydroge 59.7 1.6E+02 0.0034 28.2 12.0 48 269-322 6-54 (223)
457 cd05281 TDH Threonine dehydrog 59.7 81 0.0018 32.0 10.5 48 258-312 160-210 (341)
458 PRK08177 short chain dehydroge 59.7 73 0.0016 30.2 9.6 48 268-321 6-54 (225)
459 cd08284 FDH_like_2 Glutathione 59.0 1.2E+02 0.0025 30.7 11.5 49 257-311 163-213 (344)
460 cd00401 AdoHcyase S-adenosyl-L 58.9 49 0.0011 35.9 9.0 46 260-311 200-246 (413)
461 PRK06114 short chain dehydroge 58.8 1.6E+02 0.0034 28.5 12.0 60 262-323 8-69 (254)
462 PRK12384 sorbitol-6-phosphate 58.7 1.8E+02 0.0038 28.1 12.5 60 263-323 3-64 (259)
463 TIGR00692 tdh L-threonine 3-de 58.6 86 0.0019 31.8 10.5 49 258-312 158-208 (340)
464 PRK09422 ethanol-active dehydr 58.6 1.2E+02 0.0027 30.4 11.5 52 255-312 156-209 (338)
465 PF04378 RsmJ: Ribosomal RNA s 58.2 41 0.00089 34.0 7.8 56 268-326 62-117 (245)
466 PRK06997 enoyl-(acyl carrier p 57.8 1.9E+02 0.0041 28.4 12.4 59 262-322 6-66 (260)
467 PRK08263 short chain dehydroge 57.4 1.2E+02 0.0026 29.8 10.9 56 263-323 4-60 (275)
468 TIGR01830 3oxo_ACP_reduc 3-oxo 57.3 1.6E+02 0.0035 27.6 11.5 54 269-323 4-59 (239)
469 PRK12746 short chain dehydroge 57.3 1.8E+02 0.004 27.8 12.8 60 262-323 6-67 (254)
470 KOG3045 Predicted RNA methylas 57.0 19 0.00042 37.0 5.1 40 420-481 223-263 (325)
471 TIGR01289 LPOR light-dependent 56.9 1.8E+02 0.0039 29.6 12.5 60 262-323 3-64 (314)
472 PF11899 DUF3419: Protein of u 56.8 29 0.00062 37.2 6.8 49 251-302 25-73 (380)
473 PRK07792 fabG 3-ketoacyl-(acyl 56.2 1.8E+02 0.0039 29.4 12.3 60 262-323 12-73 (306)
474 PRK06484 short chain dehydroge 55.8 1.6E+02 0.0035 31.9 12.6 57 261-322 4-61 (520)
475 PRK12824 acetoacetyl-CoA reduc 55.7 1.8E+02 0.004 27.4 11.7 53 269-323 8-63 (245)
476 PRK08993 2-deoxy-D-gluconate 3 55.6 1.6E+02 0.0035 28.4 11.5 58 262-323 10-68 (253)
477 PRK08340 glucose-1-dehydrogena 55.5 2E+02 0.0044 27.8 12.9 56 264-322 2-58 (259)
478 PRK07904 short chain dehydroge 54.9 37 0.0008 33.3 6.8 62 261-323 7-71 (253)
479 KOG2651 rRNA adenine N-6-methy 54.8 36 0.00078 36.8 6.9 53 254-308 146-198 (476)
480 PRK09186 flagellin modificatio 54.8 1.9E+02 0.004 27.7 11.7 61 262-323 4-66 (256)
481 KOG1501 Arginine N-methyltrans 54.5 24 0.00051 38.7 5.6 55 264-320 69-124 (636)
482 PRK07856 short chain dehydroge 54.0 1.7E+02 0.0036 28.2 11.2 51 262-322 6-57 (252)
483 cd08297 CAD3 Cinnamyl alcohol 53.9 1.7E+02 0.0037 29.4 11.8 52 255-312 159-212 (341)
484 PRK06125 short chain dehydroge 53.7 2.2E+02 0.0047 27.6 13.4 60 262-322 7-67 (259)
485 PLN00015 protochlorophyllide r 53.5 1.9E+02 0.004 29.3 11.9 54 269-323 3-58 (308)
486 PRK08690 enoyl-(acyl carrier p 53.1 2.3E+02 0.005 27.7 12.4 60 262-323 6-67 (261)
487 PLN03209 translocon at the inn 52.3 37 0.0008 38.4 7.0 67 256-323 74-149 (576)
488 PRK07370 enoyl-(acyl carrier p 52.2 1.5E+02 0.0033 28.9 10.8 36 261-296 5-42 (258)
489 cd08279 Zn_ADH_class_III Class 51.9 1.8E+02 0.0039 30.0 11.7 51 256-312 177-229 (363)
490 PRK08703 short chain dehydroge 51.5 47 0.001 31.8 6.8 60 261-321 5-65 (239)
491 PF05430 Methyltransf_30: S-ad 51.2 22 0.00047 32.1 4.1 44 424-484 49-92 (124)
492 PRK12828 short chain dehydroge 50.7 2.2E+02 0.0047 26.7 11.6 56 262-321 7-63 (239)
493 PRK06483 dihydromonapterin red 50.6 1.8E+02 0.0039 27.6 10.7 54 263-323 3-57 (236)
494 PRK06200 2,3-dihydroxy-2,3-dih 50.4 1.4E+02 0.003 29.0 10.1 57 262-323 6-63 (263)
495 cd08287 FDH_like_ADH3 formalde 50.3 1.6E+02 0.0034 29.8 10.8 52 255-312 162-215 (345)
496 PRK07453 protochlorophyllide o 50.0 2.9E+02 0.0062 28.0 12.6 59 262-322 6-65 (322)
497 PRK07041 short chain dehydroge 49.8 2.3E+02 0.0049 26.7 12.9 53 269-323 3-56 (230)
498 COG2384 Predicted SAM-dependen 49.7 38 0.00082 33.8 5.8 68 260-328 15-83 (226)
499 cd08292 ETR_like_2 2-enoyl thi 49.5 1.9E+02 0.004 28.7 11.0 46 255-302 133-180 (324)
500 cd08291 ETR_like_1 2-enoyl thi 49.4 1.4E+02 0.0031 30.0 10.3 46 261-312 142-190 (324)
No 1
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=100.00 E-value=4.8e-67 Score=537.92 Aligned_cols=371 Identities=27% Similarity=0.396 Sum_probs=305.9
Q ss_pred CCCCcccccccccCHHHHHHHHHhhchhhHHHHHHHhcCCCCccEEEeecCCCCHHHHHHHHHHHHHhcCCCcccccccc
Q 011036 3 LSGRYSYSPLLRWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSV 82 (495)
Q Consensus 3 ~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~pp~~~~iRVNTl~~s~~~~~~~L~~~~~~~~~~~~~~~~~~ 82 (495)
++++ +|+|.++|++++++|+...|+.++++++...+ .+-.+.++|.++-+...+..++.+.....+. ....++.
T Consensus 7 ~~e~-~~~~~~~~~~e~~~~~~d~~~~~d~~~~~~~~-~e~~~~~l~~~~~~~~~~~~~e~~~~~~~~~----~~l~lp~ 80 (460)
T KOG1122|consen 7 DSEE-EYLPGSGSNPEVEDYFTDDFRDDDLDDIDLKL-IERKSRKLRKRESLEASEAEEELNTNTFEEG----DPLLLPT 80 (460)
T ss_pred cccc-ccCcCCCCCccchhhhccccCccchhhhhhhh-hhhHHHHHHHhhcccchhhHHHHhhcccccc----ccccCcc
Confidence 5677 99999999999999999999999999999999 9999999999999888877777766332211 0111222
Q ss_pred cc-ccCCCccccccCCCCCceEEEeCCCCccccCCCCCCCCCCeEEEccchHHHHHcccccccCceeeccCCccCCCeEE
Q 011036 83 KG-RLQNGTISESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVA 161 (495)
Q Consensus 83 ~~-~~~~~~~~~~~~~~l~~~l~i~~~gp~~~~~~~~~~~~~k~ViVd~~~~eAVLrGA~v~aPGIl~~~~~i~~Gd~Va 161 (495)
.+ ......++..++..+-.+-++++.|+++-- ....+ +++..|+.++++||++|+||++.+.++++.++.+.
T Consensus 81 ~~~~~~~~~~P~L~~v~~~~~~~~~~l~dfk~l-----~~~~~--~~~~~~~~l~~~~~~~y~y~~~l~~~~~e~~~~~e 153 (460)
T KOG1122|consen 81 LEEEEEKDSVPDLQNVDLRIVELVPVLGDFKNL-----KEPGR--LRSEYCGQLKKDGAHYYAYGVFLAEKLMELFPLVE 153 (460)
T ss_pred cccccccccCCccchhhHHhhhhhhhhcchhcc-----ccccc--chhhHHHHHHhcccceechHHHHHHHhcccccHHH
Confidence 22 111122223334444445566677777521 11222 89999999999999999999999999999999999
Q ss_pred EEEcccCCcCCCCCccccccccccccCCCCCCcccCCCceEeecccccccccccccccc----eeeecCCcccccCCccc
Q 011036 162 VSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEG----IAVDMHNRIFQLPSFYD 237 (495)
Q Consensus 162 V~~~l~~~~~~~~w~~~~~rg~~l~~~~~~~~~~~r~~l~Vg~GialmSr~elf~~p~G----IaVe~~~~v~~lp~~~~ 237 (495)
|+.++++.++.+.. .+. .+..+++.|.+...+++.+++..+-| +.+.+...++.+|.+.+
T Consensus 154 v~~~~e~~~~~rp~--------tir--------~ntlk~~rrd~~~~L~nrgv~~~pl~~ws~vgl~v~~s~vpigat~e 217 (460)
T KOG1122|consen 154 VYEFLEANEKPRPV--------TIR--------TNTLKTRRRDLAVELSNRGVNLDPLGKWSKVGLVVFDSVVPIGATPE 217 (460)
T ss_pred HHHHHHhhcCCCCe--------eEE--------ecccchhhhhHHHHHHhcccCcccccccccceEEEecCccccCCchh
Confidence 99999999986322 211 12236777888888888888876655 78888899999999999
Q ss_pred cccccEEEccccHHHHHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEE
Q 011036 238 VLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTY 317 (495)
Q Consensus 238 ~~~G~i~lQ~l~S~v~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~ 317 (495)
++.|.+++|++||++++++|+||||||||||||||||||+|||+||+++|.|+|.|.+++|+..++.++.+||+++..+.
T Consensus 218 ~lag~~~LQ~~sS~Lpv~aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~ 297 (460)
T KOG1122|consen 218 YLAGHYMLQNASSFLPVMALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVS 297 (460)
T ss_pred hcccceeeccCcccceeeecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred EcchhHHHHhhCCCCCCCCccCCCCCccccccccccccccccccchhccCCCCCCcccccccccccccccccchhhhhhh
Q 011036 318 KLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKVSNEKGVERTYVSKADTRKN 397 (495)
Q Consensus 318 ~~Da~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 397 (495)
++|..+..
T Consensus 298 n~D~~ef~------------------------------------------------------------------------ 305 (460)
T KOG1122|consen 298 NYDGREFP------------------------------------------------------------------------ 305 (460)
T ss_pred ccCccccc------------------------------------------------------------------------
Confidence 88875420
Q ss_pred hhhccCCCCCCccCCCCccCCCCCCCCCccEEEEcCCCCCCCC--cccchhhhhcHHHHHHhHHHHHHHHHHHHhcCCCC
Q 011036 398 MRRMRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGL--RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPG 475 (495)
Q Consensus 398 ~~~~~~~~~~~~~~~g~~~~~~~f~~~sFDrVLlDaPCSglG~--rp~l~~~~~t~~~l~~~a~~Qrrll~~A~~lLkpG 475 (495)
.+-|++ +||||||||||||+|+ +|.....+++.+++.+++.+||+||.+|+++||+|
T Consensus 306 --------------------~~~~~~-~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~G 364 (460)
T KOG1122|consen 306 --------------------EKEFPG-SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAG 364 (460)
T ss_pred --------------------ccccCc-ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCC
Confidence 013455 9999999999999775 78877768899999999999999999999999999
Q ss_pred CEEEEEeCCCCCcCcccccC
Q 011036 476 GIIVYSTCTINPGENEALCA 495 (495)
Q Consensus 476 G~LVYSTCTi~p~ENE~vV~ 495 (495)
|+||||||||+++|||+||+
T Consensus 365 GvLVYSTCSI~~~ENE~vV~ 384 (460)
T KOG1122|consen 365 GVLVYSTCSITVEENEAVVD 384 (460)
T ss_pred cEEEEEeeecchhhhHHHHH
Confidence 99999999999999999984
No 2
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.3e-50 Score=418.40 Aligned_cols=246 Identities=36% Similarity=0.598 Sum_probs=203.5
Q ss_pred cccCHHHHHHHHHhhchhhHHHHHHHhcCCCCccEEEeecCCCCHHHHHHHHHHHHHhcCCCccccccccccccCCCccc
Q 011036 13 LRWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTIS 92 (495)
Q Consensus 13 ~~~~~~v~~~l~~~~~~~~~~~~~~~l~~pp~~~~iRVNTl~~s~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (495)
..+.+-+.+++.+.||.+.++++++++.+||. .++||||++++++++.+.|... + +.
T Consensus 52 ~~~p~w~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~Rvn~lk~~~~~~~~~l~~~---------~-------------~~ 108 (355)
T COG0144 52 YSHPEWLVEKLPDALGEDEAEAIAAALLRPPP-RSLRVNTLKADVEELLEALEEA---------G-------------VL 108 (355)
T ss_pred ccCcHHHHHHHHHHcChHHHHHHHHHcCCCCC-eeEEEcCccCCHHHHHHHHhhc---------c-------------cc
Confidence 35677888999999998889999999999999 9999999999999999998854 1 00
Q ss_pred cccCCCCCceEEEeCCCCccccCCCCCCCCCCeEEEccchHHHHHcccccccCceeeccCCccCCCeEEEEEcccCCcCC
Q 011036 93 ESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLD 172 (495)
Q Consensus 93 ~~~~~~l~~~l~i~~~gp~~~~~~~~~~~~~k~ViVd~~~~eAVLrGA~v~aPGIl~~~~~i~~Gd~VaV~~~l~~~~~~ 172 (495)
.......++++.+...+|
T Consensus 109 ~~~~~~~~~~~~i~~~~~-------------------------------------------------------------- 126 (355)
T COG0144 109 DEKPWVLDEVLRIEASGP-------------------------------------------------------------- 126 (355)
T ss_pred cccCCccccEEEecCCCC--------------------------------------------------------------
Confidence 000011222222221111
Q ss_pred CCCccccccccccccCCCCCCcccCCCceEeecccccccccccccccceeeecCCcccccCCccccccccEEEccccHHH
Q 011036 173 GGWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIV 252 (495)
Q Consensus 173 ~~w~~~~~rg~~l~~~~~~~~~~~r~~l~Vg~GialmSr~elf~~p~GIaVe~~~~v~~lp~~~~~~~G~i~lQ~l~S~v 252 (495)
+..+| ++.+|+|++||++||+
T Consensus 127 --------------------------------------------------------~~~~~---~~~~G~~~vQd~sS~l 147 (355)
T COG0144 127 --------------------------------------------------------IGRLP---EFAEGLIYVQDEASQL 147 (355)
T ss_pred --------------------------------------------------------cccCh---hhhceEEEEcCHHHHH
Confidence 12233 3468999999999999
Q ss_pred HHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEE-EEEeCChHHHHHHHHHHHHhCCCceEEEEcchhHHHHhhCCC
Q 011036 253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEV-VAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNES 331 (495)
Q Consensus 253 ~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~V-iA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~~~~~~~~~ 331 (495)
++++|+|+||++||||||||||||+|||++|.++|.+ +|+|+|.+|+..++++++++|+.|+.++..|+.....
T Consensus 148 ~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~----- 222 (355)
T COG0144 148 PALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAE----- 222 (355)
T ss_pred HHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccc-----
Confidence 9999999999999999999999999999999997766 9999999999999999999999999999988754210
Q ss_pred CCCCCccCCCCCccccccccccccccccccchhccCCCCCCcccccccccccccccccchhhhhhhhhhccCCCCCCccC
Q 011036 332 NDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKVSNEKGVERTYVSKADTRKNMRRMRNGPGRNQCL 411 (495)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ 411 (495)
T Consensus 223 -------------------------------------------------------------------------------- 222 (355)
T COG0144 223 -------------------------------------------------------------------------------- 222 (355)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccCCCCCCCCCccEEEEcCCCCCCCCc---ccchhhhhcHHHHHHhHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCc
Q 011036 412 GGRAENSKGFSPNSFDRVLLDAPCSALGLR---PRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPG 488 (495)
Q Consensus 412 ~g~~~~~~~f~~~sFDrVLlDaPCSglG~r---p~l~~~~~t~~~l~~~a~~Qrrll~~A~~lLkpGG~LVYSTCTi~p~ 488 (495)
..+..++||+||+||||||+|+. |++++ .++.+++..++++|++||++|+++|||||+|||||||++|+
T Consensus 223 -------~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~-~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~e 294 (355)
T COG0144 223 -------LLPGGEKFDRILLDAPCSGTGVIRRDPDVKW-RRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPE 294 (355)
T ss_pred -------cccccCcCcEEEECCCCCCCcccccCccccc-cCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchh
Confidence 01112369999999999999995 88888 88999999999999999999999999999999999999999
Q ss_pred CcccccC
Q 011036 489 ENEALCA 495 (495)
Q Consensus 489 ENE~vV~ 495 (495)
|||+||+
T Consensus 295 ENE~vV~ 301 (355)
T COG0144 295 ENEEVVE 301 (355)
T ss_pred cCHHHHH
Confidence 9999983
No 3
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=100.00 E-value=4e-48 Score=413.46 Aligned_cols=162 Identities=36% Similarity=0.591 Sum_probs=148.2
Q ss_pred ccccEEEccccHHHHHhhc--CCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEE
Q 011036 239 LEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITT 316 (495)
Q Consensus 239 ~~G~i~lQ~l~S~v~~~~L--dpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~ 316 (495)
..|.|++||.+||+++++| +|+||++||||||||||||+|||++|+++|.|+|+|++++|+..++++++++|++++.+
T Consensus 89 ~~G~~yvQd~sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v 168 (470)
T PRK11933 89 LSGLFYIQEASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVAL 168 (470)
T ss_pred HCCcEEEECHHHHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEE
Confidence 4799999999999999999 99999999999999999999999999999999999999999999999999999999988
Q ss_pred EEcchhHHHHhhCCCCCCCCccCCCCCccccccccccccccccccchhccCCCCCCcccccccccccccccccchhhhhh
Q 011036 317 YKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKVSNEKGVERTYVSKADTRK 396 (495)
Q Consensus 317 ~~~Da~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 396 (495)
...|+.+..
T Consensus 169 ~~~D~~~~~----------------------------------------------------------------------- 177 (470)
T PRK11933 169 THFDGRVFG----------------------------------------------------------------------- 177 (470)
T ss_pred EeCchhhhh-----------------------------------------------------------------------
Confidence 888875420
Q ss_pred hhhhccCCCCCCccCCCCccCCCCCCCCCccEEEEcCCCCCCCCc---ccchhhhhcHHHHHHhHHHHHHHHHHHHhcCC
Q 011036 397 NMRRMRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGLR---PRLFAAEETIQSLRNHGKYQRRMFDQAVQLVR 473 (495)
Q Consensus 397 ~~~~~~~~~~~~~~~~g~~~~~~~f~~~sFDrVLlDaPCSglG~r---p~l~~~~~t~~~l~~~a~~Qrrll~~A~~lLk 473 (495)
...+..||+||+||||||+|+. |...+ .|+.+++..++.+|++||++|+++||
T Consensus 178 -----------------------~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~-~~s~~~v~~l~~lQ~~iL~~A~~~Lk 233 (470)
T PRK11933 178 -----------------------AALPETFDAILLDAPCSGEGTVRKDPDALK-NWSPESNLEIAATQRELIESAFHALK 233 (470)
T ss_pred -----------------------hhchhhcCeEEEcCCCCCCcccccCHHHhh-hCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 0124579999999999999983 55555 78999999999999999999999999
Q ss_pred CCCEEEEEeCCCCCcCcccccC
Q 011036 474 PGGIIVYSTCTINPGENEALCA 495 (495)
Q Consensus 474 pGG~LVYSTCTi~p~ENE~vV~ 495 (495)
|||+|||||||++++|||+||+
T Consensus 234 pGG~LVYSTCT~~~eENE~vV~ 255 (470)
T PRK11933 234 PGGTLVYSTCTLNREENQAVCL 255 (470)
T ss_pred CCcEEEEECCCCCHHHHHHHHH
Confidence 9999999999999999999984
No 4
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=100.00 E-value=2e-45 Score=370.78 Aligned_cols=163 Identities=40% Similarity=0.694 Sum_probs=147.3
Q ss_pred ccccEEEccccHHHHHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEE
Q 011036 239 LEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYK 318 (495)
Q Consensus 239 ~~G~i~lQ~l~S~v~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~ 318 (495)
++|.|++||++|++++++|+|+||++||||||||||||+|||++|.++|+|+|+|++.+|+..++++++++|+.++.+..
T Consensus 63 ~~G~~~vQd~sS~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~ 142 (283)
T PF01189_consen 63 KNGLFYVQDESSQLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVIN 142 (283)
T ss_dssp HTTSEEEHHHHHHHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEE
T ss_pred hCCcEEecccccccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEe
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHhhCCCCCCCCccCCCCCccccccccccccccccccchhccCCCCCCcccccccccccccccccchhhhhhhh
Q 011036 319 LDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKVSNEKGVERTYVSKADTRKNM 398 (495)
Q Consensus 319 ~Da~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 398 (495)
.|+.+....
T Consensus 143 ~D~~~~~~~----------------------------------------------------------------------- 151 (283)
T PF01189_consen 143 ADARKLDPK----------------------------------------------------------------------- 151 (283)
T ss_dssp SHHHHHHHH-----------------------------------------------------------------------
T ss_pred ecccccccc-----------------------------------------------------------------------
Confidence 998774210
Q ss_pred hhccCCCCCCccCCCCccCCCCCCCCCccEEEEcCCCCCCCC---cccchhhhhcHHHHHHhHHHHHHHHHHHHhcC---
Q 011036 399 RRMRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLV--- 472 (495)
Q Consensus 399 ~~~~~~~~~~~~~~g~~~~~~~f~~~sFDrVLlDaPCSglG~---rp~l~~~~~t~~~l~~~a~~Qrrll~~A~~lL--- 472 (495)
.....||+||+||||||+|+ .|...+ .++.+++..++.+|++||++|+++|
T Consensus 152 ----------------------~~~~~fd~VlvDaPCSg~G~i~r~p~~~~-~~~~~~~~~l~~~Q~~iL~~a~~~~~~~ 208 (283)
T PF01189_consen 152 ----------------------KPESKFDRVLVDAPCSGLGTIRRNPDIKW-RRSPEDIEKLAELQREILDNAAKLLNID 208 (283)
T ss_dssp ----------------------HHTTTEEEEEEECSCCCGGGTTTCTTHHH-HE-TTHHHHHHHHHHHHHHHHHHCEHHH
T ss_pred ----------------------ccccccchhhcCCCccchhhhhhccchhh-cccccccchHHHHHHHHHHHHHHhhccc
Confidence 01236999999999999997 466666 6678899999999999999999999
Q ss_pred -CCCCEEEEEeCCCCCcCcccccC
Q 011036 473 -RPGGIIVYSTCTINPGENEALCA 495 (495)
Q Consensus 473 -kpGG~LVYSTCTi~p~ENE~vV~ 495 (495)
||||+|||||||++++|||+||+
T Consensus 209 ~k~gG~lvYsTCS~~~eENE~vV~ 232 (283)
T PF01189_consen 209 FKPGGRLVYSTCSLSPEENEEVVE 232 (283)
T ss_dssp BEEEEEEEEEESHHHGGGTHHHHH
T ss_pred ccCCCeEEEEeccHHHHHHHHHHH
Confidence 99999999999999999999983
No 5
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=2.4e-42 Score=366.77 Aligned_cols=245 Identities=30% Similarity=0.473 Sum_probs=203.5
Q ss_pred cccCHHHHHHHHHhhchhhHHHHHHHhcCCCCccEEEeecCCCCHHHHHHHHHHHHHhcCCCccccccccccccCCCccc
Q 011036 13 LRWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTIS 92 (495)
Q Consensus 13 ~~~~~~v~~~l~~~~~~~~~~~~~~~l~~pp~~~~iRVNTl~~s~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (495)
.++.+-+.+++.+.||.+..++|++++..||. +++||||+|++++++++.|.+. | +.
T Consensus 132 ~s~P~wl~~~~~~~~g~~~~~~~~~~~~~~~~-~~~RvN~~k~~~~~~~~~l~~~---------g-------------~~ 188 (431)
T PRK14903 132 YSHPKWLVNYWRSFLPEEAVLRIMEWNQEPLP-TMLRVNSLAITREEVIKILAEE---------G-------------TE 188 (431)
T ss_pred hcCcHHHHHHHHHHcCHHHHHHHHHHhcCCCC-eeEEeeCCcCCHHHHHHHHHHC---------C-------------Ce
Confidence 34566789999999999999999999999987 4899999999999999988644 3 22
Q ss_pred cccCCCCCceEEEeCCCCccccCCCCCCCCCCeEEEccchHHHHHcccccccCceeeccCCccCCCeEEEEEcccCCcCC
Q 011036 93 ESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLD 172 (495)
Q Consensus 93 ~~~~~~l~~~l~i~~~gp~~~~~~~~~~~~~k~ViVd~~~~eAVLrGA~v~aPGIl~~~~~i~~Gd~VaV~~~l~~~~~~ 172 (495)
+.+.|.+|+.++++..+. .
T Consensus 189 ~~~~~~~~~~~~~~~~~~-~------------------------------------------------------------ 207 (431)
T PRK14903 189 AVPGKHSPFSLIVRKLGV-N------------------------------------------------------------ 207 (431)
T ss_pred eEECCCCCceEEEcCCCC-C------------------------------------------------------------
Confidence 333444454444321100 0
Q ss_pred CCCccccccccccccCCCCCCcccCCCceEeecccccccccccccccceeeecCCcccccCCccccccccEEEccccHHH
Q 011036 173 GGWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIV 252 (495)
Q Consensus 173 ~~w~~~~~rg~~l~~~~~~~~~~~r~~l~Vg~GialmSr~elf~~p~GIaVe~~~~v~~lp~~~~~~~G~i~lQ~l~S~v 252 (495)
+..++ .+++|.+++|+.+|++
T Consensus 208 --------------------------------------------------------~~~~~---~~~~G~~~~Qd~~s~~ 228 (431)
T PRK14903 208 --------------------------------------------------------MNDSR---VIKDGLATVQGESSQI 228 (431)
T ss_pred --------------------------------------------------------cccCh---HHHCCeEEEECHHHHH
Confidence 00111 2358999999999999
Q ss_pred HHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhHHHHhhCCCC
Q 011036 253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESN 332 (495)
Q Consensus 253 ~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~~~~~~~~~~ 332 (495)
++.+|+|++|++||||||||||||+|+|.+|+++|+|+|+|+|++|+..++++++++|+++|++...|+.+..
T Consensus 229 ~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~------- 301 (431)
T PRK14903 229 VPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLT------- 301 (431)
T ss_pred HHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhh-------
Confidence 9999999999999999999999999999999999999999999999999999999999998999999875420
Q ss_pred CCCCccCCCCCccccccccccccccccccchhccCCCCCCcccccccccccccccccchhhhhhhhhhccCCCCCCccCC
Q 011036 333 DEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKVSNEKGVERTYVSKADTRKNMRRMRNGPGRNQCLG 412 (495)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~ 412 (495)
T Consensus 302 -------------------------------------------------------------------------------- 301 (431)
T PRK14903 302 -------------------------------------------------------------------------------- 301 (431)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccCCCCCCCCCccEEEEcCCCCCCCC---cccchhhhhcHHHHHHhHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCcC
Q 011036 413 GRAENSKGFSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGE 489 (495)
Q Consensus 413 g~~~~~~~f~~~sFDrVLlDaPCSglG~---rp~l~~~~~t~~~l~~~a~~Qrrll~~A~~lLkpGG~LVYSTCTi~p~E 489 (495)
.+..++||+||+||||||+|+ +|...+ .++.+++..++..|+++|.+|.++|||||+|||||||++++|
T Consensus 302 -------~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~-~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eE 373 (431)
T PRK14903 302 -------EYVQDTFDRILVDAPCTSLGTARNHPEVLR-RVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEE 373 (431)
T ss_pred -------hhhhccCCEEEECCCCCCCccccCChHHHH-hCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhh
Confidence 012357999999999999998 366666 678899999999999999999999999999999999999999
Q ss_pred cccccC
Q 011036 490 NEALCA 495 (495)
Q Consensus 490 NE~vV~ 495 (495)
||++|+
T Consensus 374 ne~vv~ 379 (431)
T PRK14903 374 NTEVVK 379 (431)
T ss_pred CHHHHH
Confidence 999983
No 6
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=1.8e-41 Score=360.37 Aligned_cols=246 Identities=36% Similarity=0.581 Sum_probs=202.5
Q ss_pred ccCHHHHHHHHHhhchhhHHHHHHHhcCCCCccEEEeecCCCCHHHHHHHHHHHHHhcCCCccccccccccccCCCcccc
Q 011036 14 RWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTISE 93 (495)
Q Consensus 14 ~~~~~v~~~l~~~~~~~~~~~~~~~l~~pp~~~~iRVNTl~~s~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (495)
++.+-+.+++.+.||.+..++|++++.+||. +++||||+|++++++++.|.+. | +..
T Consensus 148 s~P~wl~~~~~~~~g~~~~~~~~~~~~~~~~-~~~Rvn~~k~~~~~~~~~l~~~---------g-------------~~~ 204 (434)
T PRK14901 148 SFPDWLVKLWLEWLGLEEAEQLCKWFNQPPS-LDLRINPLRTSLEEVQAALAEA---------G-------------ITA 204 (434)
T ss_pred CCcHHHHHHHHHHhCHHHHHHHHHHhCCCCC-eEEEECCCCCCHHHHHHHHHHC---------C-------------Cce
Confidence 5677789999999999989999999999887 7889999999999999888644 3 222
Q ss_pred ccCCCCCceEEEeCCCCccccCCCCCCCCCCeEEEccchHHHHHcccccccCceeeccCCccCCCeEEEEEcccCCcCCC
Q 011036 94 SQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDG 173 (495)
Q Consensus 94 ~~~~~l~~~l~i~~~gp~~~~~~~~~~~~~k~ViVd~~~~eAVLrGA~v~aPGIl~~~~~i~~Gd~VaV~~~l~~~~~~~ 173 (495)
.+.|.+|+.+.++...
T Consensus 205 ~~~~~~~~~~~~~~~~---------------------------------------------------------------- 220 (434)
T PRK14901 205 TPIPGLPQGLRLTGNP---------------------------------------------------------------- 220 (434)
T ss_pred EECCCCCCeEEecCCC----------------------------------------------------------------
Confidence 2333344443332100
Q ss_pred CCccccccccccccCCCCCCcccCCCceEeecccccccccccccccceeeecCCcccccCCccccccccEEEccccHHHH
Q 011036 174 GWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVT 253 (495)
Q Consensus 174 ~w~~~~~rg~~l~~~~~~~~~~~r~~l~Vg~GialmSr~elf~~p~GIaVe~~~~v~~lp~~~~~~~G~i~lQ~l~S~v~ 253 (495)
..+..+|.| .+|.++.||..|+++
T Consensus 221 -----------------------------------------------------~~~~~~~~f---~~g~~~~qd~~s~l~ 244 (434)
T PRK14901 221 -----------------------------------------------------GSIRQLPGY---EEGWWTVQDRSAQLV 244 (434)
T ss_pred -----------------------------------------------------CccccChHH---hCCeEEEECHHHHHH
Confidence 000112322 589999999999999
Q ss_pred HhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhHHHHhhCCCCC
Q 011036 254 AHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESND 333 (495)
Q Consensus 254 ~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~~~~~~~~~~~ 333 (495)
+++|++++|++||||||||||||++||.+|+++|+|+|+|++..|+..++++++++|+++|+++..|+.....
T Consensus 245 ~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~------- 317 (434)
T PRK14901 245 APLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLE------- 317 (434)
T ss_pred HHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhccc-------
Confidence 9999999999999999999999999999999899999999999999999999999999999999998754200
Q ss_pred CCCccCCCCCccccccccccccccccccchhccCCCCCCcccccccccccccccccchhhhhhhhhhccCCCCCCccCCC
Q 011036 334 EPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKVSNEKGVERTYVSKADTRKNMRRMRNGPGRNQCLGG 413 (495)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~g 413 (495)
T Consensus 318 -------------------------------------------------------------------------------- 317 (434)
T PRK14901 318 -------------------------------------------------------------------------------- 317 (434)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccCCCCCCCCCccEEEEcCCCCCCCC---cccchhhhhcHHHHHHhHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCcCc
Q 011036 414 RAENSKGFSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGEN 490 (495)
Q Consensus 414 ~~~~~~~f~~~sFDrVLlDaPCSglG~---rp~l~~~~~t~~~l~~~a~~Qrrll~~A~~lLkpGG~LVYSTCTi~p~EN 490 (495)
...+..++||+||+||||||+|+ +|+..+ ..+.+++..++..|+++|++|.++|||||+|||||||++++||
T Consensus 318 ----~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~-~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~En 392 (434)
T PRK14901 318 ----LKPQWRGYFDRILLDAPCSGLGTLHRHPDARW-RQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAEN 392 (434)
T ss_pred ----ccccccccCCEEEEeCCCCcccccccCcchhh-hCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhH
Confidence 00123468999999999999998 466655 5678999999999999999999999999999999999999999
Q ss_pred cccc
Q 011036 491 EALC 494 (495)
Q Consensus 491 E~vV 494 (495)
|++|
T Consensus 393 e~~v 396 (434)
T PRK14901 393 EAQI 396 (434)
T ss_pred HHHH
Confidence 9987
No 7
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=100.00 E-value=1.1e-39 Score=345.73 Aligned_cols=162 Identities=35% Similarity=0.529 Sum_probs=141.2
Q ss_pred cccccEEEccccHHHHHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEE-
Q 011036 238 VLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITT- 316 (495)
Q Consensus 238 ~~~G~i~lQ~l~S~v~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~- 316 (495)
+.+|++++||.+|++++.+|+|++|++||||||||||||+++|.+|+ +|+|+|+|++++++..++++++++|++ +.+
T Consensus 215 ~~~G~~~~Qd~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~-~~v~ 292 (426)
T TIGR00563 215 FEEGWVTVQDASAQWVATWLAPQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLT-IKAE 292 (426)
T ss_pred hhCCeEEEECHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCC-eEEE
Confidence 35899999999999999999999999999999999999999999997 799999999999999999999999987 444
Q ss_pred -EEcchhHHHHhhCCCCCCCCccCCCCCccccccccccccccccccchhccCCCCCCcccccccccccccccccchhhhh
Q 011036 317 -YKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKVSNEKGVERTYVSKADTR 395 (495)
Q Consensus 317 -~~~Da~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (495)
...|+...
T Consensus 293 ~~~~d~~~~----------------------------------------------------------------------- 301 (426)
T TIGR00563 293 TKDGDGRGP----------------------------------------------------------------------- 301 (426)
T ss_pred Eeccccccc-----------------------------------------------------------------------
Confidence 33332110
Q ss_pred hhhhhccCCCCCCccCCCCccCCCCCCCCCccEEEEcCCCCCCCC---cccchhhhhcHHHHHHhHHHHHHHHHHHHhcC
Q 011036 396 KNMRRMRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLV 472 (495)
Q Consensus 396 k~~~~~~~~~~~~~~~~g~~~~~~~f~~~sFDrVLlDaPCSglG~---rp~l~~~~~t~~~l~~~a~~Qrrll~~A~~lL 472 (495)
...+..++||+||+||||||+|+ .|++.+ .++.+++.+++..|++||++|.++|
T Consensus 302 ----------------------~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~-~~~~~~~~~l~~lQ~~lL~~a~~~L 358 (426)
T TIGR00563 302 ----------------------SQWAENEQFDRILLDAPCSATGVIRRHPDIKW-LRKPRDIAELAELQSEILDAIWPLL 358 (426)
T ss_pred ----------------------cccccccccCEEEEcCCCCCCcccccCcchhh-cCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 00012457999999999999997 477766 6788999999999999999999999
Q ss_pred CCCCEEEEEeCCCCCcCcccccC
Q 011036 473 RPGGIIVYSTCTINPGENEALCA 495 (495)
Q Consensus 473 kpGG~LVYSTCTi~p~ENE~vV~ 495 (495)
||||+|||||||++++|||++|+
T Consensus 359 kpgG~lvystcs~~~~Ene~~v~ 381 (426)
T TIGR00563 359 KTGGTLVYATCSVLPEENSEQIK 381 (426)
T ss_pred CCCcEEEEEeCCCChhhCHHHHH
Confidence 99999999999999999999873
No 8
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=100.00 E-value=4.5e-40 Score=328.40 Aligned_cols=161 Identities=35% Similarity=0.601 Sum_probs=146.0
Q ss_pred ccccEEEccccHHHHHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEE
Q 011036 239 LEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYK 318 (495)
Q Consensus 239 ~~G~i~lQ~l~S~v~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~ 318 (495)
++|.|++||.+|++++.+|+|+||++|||||||||+||++||++|+++|.|+|+|+++.++..++++++++|+.+|+++.
T Consensus 49 ~~G~~~~qd~~s~~~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~ 128 (264)
T TIGR00446 49 LSGLYYIQEASSMIPPLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTN 128 (264)
T ss_pred hCCeEEEECHHHHHHHHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEec
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999998899998
Q ss_pred cchhHHHHhhCCCCCCCCccCCCCCccccccccccccccccccchhccCCCCCCcccccccccccccccccchhhhhhhh
Q 011036 319 LDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKVSNEKGVERTYVSKADTRKNM 398 (495)
Q Consensus 319 ~Da~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 398 (495)
.|+....
T Consensus 129 ~D~~~~~------------------------------------------------------------------------- 135 (264)
T TIGR00446 129 FDGRVFG------------------------------------------------------------------------- 135 (264)
T ss_pred CCHHHhh-------------------------------------------------------------------------
Confidence 8875420
Q ss_pred hhccCCCCCCccCCCCccCCCCCCCCCccEEEEcCCCCCCCCc---ccchhhhhcHHHHHHhHHHHHHHHHHHHhcCCCC
Q 011036 399 RRMRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGLR---PRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPG 475 (495)
Q Consensus 399 ~~~~~~~~~~~~~~g~~~~~~~f~~~sFDrVLlDaPCSglG~r---p~l~~~~~t~~~l~~~a~~Qrrll~~A~~lLkpG 475 (495)
....+||+||+||||||+|+. |...+ .++.+++..++..|+++|++|.++||||
T Consensus 136 ----------------------~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~-~~~~~~~~~l~~~q~~iL~~a~~~lkpg 192 (264)
T TIGR00446 136 ----------------------AAVPKFDAILLDAPCSGEGVIRKDPSRKK-NWSEEDIQEISALQKELIDSAFDALKPG 192 (264)
T ss_pred ----------------------hhccCCCEEEEcCCCCCCcccccChhhhh-cCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 012359999999999999984 55544 5688999999999999999999999999
Q ss_pred CEEEEEeCCCCCcCcccccC
Q 011036 476 GIIVYSTCTINPGENEALCA 495 (495)
Q Consensus 476 G~LVYSTCTi~p~ENE~vV~ 495 (495)
|+|||||||++++|||+||+
T Consensus 193 G~lvYstcs~~~~Ene~vv~ 212 (264)
T TIGR00446 193 GVLVYSTCSLEPEENEAVVD 212 (264)
T ss_pred CEEEEEeCCCChHHHHHHHH
Confidence 99999999999999999984
No 9
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=1.8e-36 Score=323.07 Aligned_cols=160 Identities=38% Similarity=0.614 Sum_probs=145.6
Q ss_pred ccccEEEccccHHHHHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEE
Q 011036 239 LEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYK 318 (495)
Q Consensus 239 ~~G~i~lQ~l~S~v~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~ 318 (495)
..|.++.|+..|++++++|++++|++|||+|||||+||++++.++++.|.|+|+|+|+.++..++++++++|+++|++..
T Consensus 228 ~~G~~~vqd~~s~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~ 307 (445)
T PRK14904 228 KLGLVSVQNPTQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIE 307 (445)
T ss_pred hCcEEEEeCHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEe
Confidence 47999999999999999999999999999999999999999999988899999999999999999999999998888888
Q ss_pred cchhHHHHhhCCCCCCCCccCCCCCccccccccccccccccccchhccCCCCCCcccccccccccccccccchhhhhhhh
Q 011036 319 LDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKVSNEKGVERTYVSKADTRKNM 398 (495)
Q Consensus 319 ~Da~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 398 (495)
.|+...
T Consensus 308 ~Da~~~-------------------------------------------------------------------------- 313 (445)
T PRK14904 308 GDARSF-------------------------------------------------------------------------- 313 (445)
T ss_pred Cccccc--------------------------------------------------------------------------
Confidence 886431
Q ss_pred hhccCCCCCCccCCCCccCCCCCCCCCccEEEEcCCCCCCCC---cccchhhhhcHHHHHHhHHHHHHHHHHHHhcCCCC
Q 011036 399 RRMRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPG 475 (495)
Q Consensus 399 ~~~~~~~~~~~~~~g~~~~~~~f~~~sFDrVLlDaPCSglG~---rp~l~~~~~t~~~l~~~a~~Qrrll~~A~~lLkpG 475 (495)
.++++||+|++||||||+|+ .|+..+ ..+.+++..++..|+++|..|.++||||
T Consensus 314 ----------------------~~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~-~~~~~~~~~l~~~q~~iL~~a~~~lkpg 370 (445)
T PRK14904 314 ----------------------SPEEQPDAILLDAPCTGTGVLGRRAELRW-KLTPEKLAELVGLQAELLDHAASLLKPG 370 (445)
T ss_pred ----------------------ccCCCCCEEEEcCCCCCcchhhcCcchhh-cCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 01347999999999999998 466665 5678899999999999999999999999
Q ss_pred CEEEEEeCCCCCcCcccccC
Q 011036 476 GIIVYSTCTINPGENEALCA 495 (495)
Q Consensus 476 G~LVYSTCTi~p~ENE~vV~ 495 (495)
|+|||||||++++|||+||.
T Consensus 371 G~lvystcs~~~~Ene~~v~ 390 (445)
T PRK14904 371 GVLVYATCSIEPEENELQIE 390 (445)
T ss_pred cEEEEEeCCCChhhHHHHHH
Confidence 99999999999999999873
No 10
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=3.2e-36 Score=319.54 Aligned_cols=160 Identities=37% Similarity=0.602 Sum_probs=141.3
Q ss_pred ccccEEEccccHHHHHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEE
Q 011036 239 LEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYK 318 (495)
Q Consensus 239 ~~G~i~lQ~l~S~v~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~ 318 (495)
++|.+++||..|++++.+|++++|++|||+|||||+||++++.++.+ ++|+|+|+|+.++..++++++++|++ ++++.
T Consensus 222 ~~G~~~iQd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~s~~~l~~~~~n~~~~g~~-~~~~~ 299 (427)
T PRK10901 222 AEGWVSVQDAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAPQ-AQVVALDIDAQRLERVRENLQRLGLK-ATVIV 299 (427)
T ss_pred hCceEEEECHHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEE
Confidence 57999999999999999999999999999999999999999998865 89999999999999999999999986 57777
Q ss_pred cchhHHHHhhCCCCCCCCccCCCCCccccccccccccccccccchhccCCCCCCcccccccccccccccccchhhhhhhh
Q 011036 319 LDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKVSNEKGVERTYVSKADTRKNM 398 (495)
Q Consensus 319 ~Da~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 398 (495)
.|+.+..
T Consensus 300 ~D~~~~~------------------------------------------------------------------------- 306 (427)
T PRK10901 300 GDARDPA------------------------------------------------------------------------- 306 (427)
T ss_pred cCcccch-------------------------------------------------------------------------
Confidence 7764310
Q ss_pred hhccCCCCCCccCCCCccCCCCCCCCCccEEEEcCCCCCCCC---cccchhhhhcHHHHHHhHHHHHHHHHHHHhcCCCC
Q 011036 399 RRMRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPG 475 (495)
Q Consensus 399 ~~~~~~~~~~~~~~g~~~~~~~f~~~sFDrVLlDaPCSglG~---rp~l~~~~~t~~~l~~~a~~Qrrll~~A~~lLkpG 475 (495)
..+.+++||+|++|||||+.|+ +|.+.+ ..+..++.++...|+++|++|.++||||
T Consensus 307 --------------------~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~-~~~~~~l~~l~~~q~~iL~~a~~~LkpG 365 (427)
T PRK10901 307 --------------------QWWDGQPFDRILLDAPCSATGVIRRHPDIKW-LRRPEDIAALAALQSEILDALWPLLKPG 365 (427)
T ss_pred --------------------hhcccCCCCEEEECCCCCcccccccCccccc-cCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 0122457999999999999997 355555 4577889999999999999999999999
Q ss_pred CEEEEEeCCCCCcCccccc
Q 011036 476 GIIVYSTCTINPGENEALC 494 (495)
Q Consensus 476 G~LVYSTCTi~p~ENE~vV 494 (495)
|+|||||||++++|||++|
T Consensus 366 G~lvystcs~~~~Ene~~v 384 (427)
T PRK10901 366 GTLLYATCSILPEENEQQI 384 (427)
T ss_pred CEEEEEeCCCChhhCHHHH
Confidence 9999999999999999987
No 11
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=4.8e-36 Score=319.52 Aligned_cols=161 Identities=43% Similarity=0.701 Sum_probs=144.7
Q ss_pred ccccEEEccccHHHHHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEE
Q 011036 239 LEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYK 318 (495)
Q Consensus 239 ~~G~i~lQ~l~S~v~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~ 318 (495)
.+|.+++|+..|++++.++++++|++|||||||||+||+++|.++++.|+|+|+|+++.++..++++++++|+++|+++.
T Consensus 228 ~~G~~~~qd~~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~ 307 (444)
T PRK14902 228 KDGLITIQDESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKA 307 (444)
T ss_pred hCceEEEEChHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEe
Confidence 48999999999999999999999999999999999999999999987899999999999999999999999998899998
Q ss_pred cchhHHHHhhCCCCCCCCccCCCCCccccccccccccccccccchhccCCCCCCcccccccccccccccccchhhhhhhh
Q 011036 319 LDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKVSNEKGVERTYVSKADTRKNM 398 (495)
Q Consensus 319 ~Da~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 398 (495)
.|+.+..
T Consensus 308 ~D~~~~~------------------------------------------------------------------------- 314 (444)
T PRK14902 308 LDARKVH------------------------------------------------------------------------- 314 (444)
T ss_pred CCccccc-------------------------------------------------------------------------
Confidence 8875410
Q ss_pred hhccCCCCCCccCCCCccCCCCCCCCCccEEEEcCCCCCCCCc---ccchhhhhcHHHHHHhHHHHHHHHHHHHhcCCCC
Q 011036 399 RRMRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGLR---PRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPG 475 (495)
Q Consensus 399 ~~~~~~~~~~~~~~g~~~~~~~f~~~sFDrVLlDaPCSglG~r---p~l~~~~~t~~~l~~~a~~Qrrll~~A~~lLkpG 475 (495)
..+ +++||+|++||||||+|+. |...+ .++..++.+++..|+++|..|.++||||
T Consensus 315 --------------------~~~-~~~fD~Vl~D~Pcsg~G~~~~~p~~~~-~~~~~~~~~l~~~q~~iL~~a~~~LkpG 372 (444)
T PRK14902 315 --------------------EKF-AEKFDKILVDAPCSGLGVIRRKPDIKY-NKTKEDIESLQEIQLEILESVAQYLKKG 372 (444)
T ss_pred --------------------chh-cccCCEEEEcCCCCCCeeeccCcchhh-cCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 012 2579999999999999973 55555 5577889999999999999999999999
Q ss_pred CEEEEEeCCCCCcCccccc
Q 011036 476 GIIVYSTCTINPGENEALC 494 (495)
Q Consensus 476 G~LVYSTCTi~p~ENE~vV 494 (495)
|+|||||||++++|||++|
T Consensus 373 G~lvystcs~~~~Ene~vv 391 (444)
T PRK14902 373 GILVYSTCTIEKEENEEVI 391 (444)
T ss_pred CEEEEEcCCCChhhhHHHH
Confidence 9999999999999999987
No 12
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-35 Score=303.30 Aligned_cols=171 Identities=33% Similarity=0.525 Sum_probs=141.8
Q ss_pred ccccEEEccccHHHHHhhcCCCCCCeEEEecCCCChHHHHHHHhcC-C--CcEEEEEeCChHHHHHHHHHHHHhCCCceE
Q 011036 239 LEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLR-D--EGEVVAVDRSHNKVMDIQKLAAEMGLKCIT 315 (495)
Q Consensus 239 ~~G~i~lQ~l~S~v~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~-~--~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~ 315 (495)
.-|.+++|+..||+++.+|+++||++||||||||||||.+|.+.+. + .|.|+|.|.+.+|+..+++..+++.-.++.
T Consensus 133 ~vg~i~rqeavSmlPvL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~ 212 (375)
T KOG2198|consen 133 GVGNIYRQEAVSMLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLL 212 (375)
T ss_pred ccccchhhhhhhccchhhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCccee
Confidence 5789999999999999999999999999999999999999877553 2 579999999999999999998888777777
Q ss_pred EEEcchhHHHHhhCCCCCCCCccCCCCCccccccccccccccccccchhccCCCCCCcccccccccccccccccchhhhh
Q 011036 316 TYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKVSNEKGVERTYVSKADTR 395 (495)
Q Consensus 316 ~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (495)
+.++|+...- ..|+
T Consensus 213 v~~~~~~~~p------------------------------------------------------------~~~~------ 226 (375)
T KOG2198|consen 213 VTNHDASLFP------------------------------------------------------------NIYL------ 226 (375)
T ss_pred eecccceecc------------------------------------------------------------cccc------
Confidence 7777764320 0000
Q ss_pred hhhhhccCCCCCCccCCCCccCCCCCCCCCccEEEEcCCCCCCCC---cccchhhhhcHHHHHHhHHHHHHHHHHHHhcC
Q 011036 396 KNMRRMRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLV 472 (495)
Q Consensus 396 k~~~~~~~~~~~~~~~~g~~~~~~~f~~~sFDrVLlDaPCSglG~---rp~l~~~~~t~~~l~~~a~~Qrrll~~A~~lL 472 (495)
+++ .+.....|||||+|+|||++|+ .|.+|...|+...-.+++.+|.+||.+++++|
T Consensus 227 ------~~~--------------~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lL 286 (375)
T KOG2198|consen 227 ------KDG--------------NDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLL 286 (375)
T ss_pred ------ccC--------------chhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHh
Confidence 000 0123457999999999999998 37777733677777789999999999999999
Q ss_pred CCCCEEEEEeCCCCCcCcccccC
Q 011036 473 RPGGIIVYSTCTINPGENEALCA 495 (495)
Q Consensus 473 kpGG~LVYSTCTi~p~ENE~vV~ 495 (495)
|+||+|||||||++|.|||+||+
T Consensus 287 k~GG~lVYSTCSLnpieNEaVV~ 309 (375)
T KOG2198|consen 287 KVGGRLVYSTCSLNPIENEAVVQ 309 (375)
T ss_pred cCCCEEEEeccCCCchhhHHHHH
Confidence 99999999999999999999984
No 13
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=7.1e-25 Score=224.73 Aligned_cols=164 Identities=30% Similarity=0.520 Sum_probs=141.1
Q ss_pred cccccEEEccccHHHHHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEE
Q 011036 238 VLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTY 317 (495)
Q Consensus 238 ~~~G~i~lQ~l~S~v~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~ 317 (495)
+..|.+.+||.+|++++++|+|.+|.+|+|+|||||.||+|+|..|+++|.|+|+|+++.++..++++.+..|.+++...
T Consensus 190 y~~g~~ilqd~asclpA~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~ 269 (413)
T KOG2360|consen 190 YKNGKFILQDKASCLPAHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESV 269 (413)
T ss_pred cccCceEEechhhcchhhhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCccccc
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred EcchhHHHHhhCCCCCCCCccCCCCCccccccccccccccccccchhccCCCCCCcccccccccccccccccchhhhhhh
Q 011036 318 KLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKVSNEKGVERTYVSKADTRKN 397 (495)
Q Consensus 318 ~~Da~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 397 (495)
..|++..+
T Consensus 270 ~~df~~t~------------------------------------------------------------------------ 277 (413)
T KOG2360|consen 270 EGDFLNTA------------------------------------------------------------------------ 277 (413)
T ss_pred cccccCCC------------------------------------------------------------------------
Confidence 77765420
Q ss_pred hhhccCCCCCCccCCCCccCCCCCCCCCccEEEEcCCCCCCCCc--ccch--hhhhcHHHHHHhHHHHHHHHHHHHhcCC
Q 011036 398 MRRMRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGLR--PRLF--AAEETIQSLRNHGKYQRRMFDQAVQLVR 473 (495)
Q Consensus 398 ~~~~~~~~~~~~~~~g~~~~~~~f~~~sFDrVLlDaPCSglG~r--p~l~--~~~~t~~~l~~~a~~Qrrll~~A~~lLk 473 (495)
. ++.-...-.||+||+|||.|.- -+.. +..+..+.|.++...|.+++.+|..+-+
T Consensus 278 -------------------~--~~~~~~v~~iL~DpscSgSgm~~r~~~~~~~e~~~~~rL~~L~~fq~~~~~hal~fp~ 336 (413)
T KOG2360|consen 278 -------------------T--PEKFRDVTYILVDPSCSGSGMVSRQDEDPGAETESPERLENLQSFQIRILKHALTFPN 336 (413)
T ss_pred -------------------C--cccccceeEEEeCCCCCCCccccceeeccCCCcccHHHHHHHHHHHHHHHHHHhcCCc
Confidence 0 1112346789999999999973 2322 2345678899999999999999998655
Q ss_pred CCCEEEEEeCCCCCcCcccccC
Q 011036 474 PGGIIVYSTCTINPGENEALCA 495 (495)
Q Consensus 474 pGG~LVYSTCTi~p~ENE~vV~ 495 (495)
. -.+||||||+..+|||.||+
T Consensus 337 ~-k~vvystcs~~reene~vv~ 357 (413)
T KOG2360|consen 337 L-KRLVYSTCSLHREENEQVVQ 357 (413)
T ss_pred h-hheeeecchhhhhhhhHHHH
Confidence 5 68999999999999999984
No 14
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.72 E-value=7.6e-17 Score=170.20 Aligned_cols=165 Identities=18% Similarity=0.192 Sum_probs=129.3
Q ss_pred ccceeeecCCcccccCCccccccccEEEccccHHHHHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChH
Q 011036 218 SEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHN 297 (495)
Q Consensus 218 p~GIaVe~~~~v~~lp~~~~~~~G~i~lQ~l~S~v~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~ 297 (495)
+..+.+++++-.|.++...++++|.|+.|......+..+. +|.+|||+|||+|+.+.+++ +++..+|+++|+|+.
T Consensus 180 ~~~~~v~E~g~~f~vdl~~g~ktG~flDqr~~R~~~~~~~---~g~rVLDlfsgtG~~~l~aa--~~ga~~V~~VD~s~~ 254 (396)
T PRK15128 180 PALLPIEEHGMKLLVDIQGGHKTGYYLDQRDSRLATRRYV---ENKRVLNCFSYTGGFAVSAL--MGGCSQVVSVDTSQE 254 (396)
T ss_pred CccEEEEECCEEEEEecccccccCcChhhHHHHHHHHHhc---CCCeEEEeccCCCHHHHHHH--hCCCCEEEEEECCHH
Confidence 4457788888889888888999999999988887776654 58999999999999887654 455669999999999
Q ss_pred HHHHHHHHHHHhCCC--ceEEEEcchhHHHHhhCCCCCCCCccCCCCCccccccccccccccccccchhccCCCCCCccc
Q 011036 298 KVMDIQKLAAEMGLK--CITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCK 375 (495)
Q Consensus 298 kv~~i~~~a~~~gl~--~i~~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (495)
.+..+++|++.+|+. +++++..|+++.+....
T Consensus 255 al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~---------------------------------------------- 288 (396)
T PRK15128 255 ALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYR---------------------------------------------- 288 (396)
T ss_pred HHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHH----------------------------------------------
Confidence 999999999999985 69999999987542100
Q ss_pred ccccccccccccccchhhhhhhhhhccCCCCCCccCCCCccCCCCCCCCCccEEEEcCCCCCCCCcccchhhhhcHHHHH
Q 011036 376 EKVSNEKGVERTYVSKADTRKNMRRMRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLR 455 (495)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~g~~~~~~~f~~~sFDrVLlDaPCSglG~rp~l~~~~~t~~~l~ 455 (495)
....+||.|++|||+..-. ...+.
T Consensus 289 ---------------------------------------------~~~~~fDlVilDPP~f~~~-----------k~~l~ 312 (396)
T PRK15128 289 ---------------------------------------------DRGEKFDVIVMDPPKFVEN-----------KSQLM 312 (396)
T ss_pred ---------------------------------------------hcCCCCCEEEECCCCCCCC-----------hHHHH
Confidence 0123699999999975432 12232
Q ss_pred HhHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCcC
Q 011036 456 NHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGE 489 (495)
Q Consensus 456 ~~a~~Qrrll~~A~~lLkpGG~LVYSTCTi~p~E 489 (495)
...+-...++..|.++|+|||.|+++|||-...+
T Consensus 313 ~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~ 346 (396)
T PRK15128 313 GACRGYKDINMLAIQLLNPGGILLTFSCSGLMTS 346 (396)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCH
Confidence 3333456888999999999999999999966544
No 15
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.71 E-value=1e-16 Score=168.36 Aligned_cols=168 Identities=22% Similarity=0.266 Sum_probs=138.0
Q ss_pred cccceeeecCCcccccCCccccccccEEEccccHHHHHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCCh
Q 011036 217 ASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296 (495)
Q Consensus 217 ~p~GIaVe~~~~v~~lp~~~~~~~G~i~lQ~l~S~v~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~ 296 (495)
.+..+.+.+++..|.+....++++|.|..|......+...+. |.+|||+||.+||.+.|.|. ++..+|+.+|.|.
T Consensus 176 ~~~~~~i~E~g~kf~v~~~~g~kTGfFlDqR~~R~~l~~~~~---GkrvLNlFsYTGgfSv~Aa~--gGA~~vt~VD~S~ 250 (393)
T COG1092 176 APEEVVIEENGVKFLVDLVDGLKTGFFLDQRDNRRALGELAA---GKRVLNLFSYTGGFSVHAAL--GGASEVTSVDLSK 250 (393)
T ss_pred CCCcEEEEeCCeEEEEecCCcccceeeHHhHHHHHHHhhhcc---CCeEEEecccCcHHHHHHHh--cCCCceEEEeccH
Confidence 466778888888888888888999999999999888777765 99999999999999988664 7777999999999
Q ss_pred HHHHHHHHHHHHhCCC--ceEEEEcchhHHHHhhCCCCCCCCccCCCCCccccccccccccccccccchhccCCCCCCcc
Q 011036 297 NKVMDIQKLAAEMGLK--CITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSC 374 (495)
Q Consensus 297 ~kv~~i~~~a~~~gl~--~i~~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (495)
..+..+++|++.+|++ .+.++.+|+++.+.....
T Consensus 251 ~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~-------------------------------------------- 286 (393)
T COG1092 251 RALEWARENAELNGLDGDRHRFIVGDVFKWLRKAER-------------------------------------------- 286 (393)
T ss_pred HHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHh--------------------------------------------
Confidence 9999999999999985 388999999997642111
Q ss_pred cccccccccccccccchhhhhhhhhhccCCCCCCccCCCCccCCCCCCCCCccEEEEcCCCCCCCCcccchhhhhcHHHH
Q 011036 375 KEKVSNEKGVERTYVSKADTRKNMRRMRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSL 454 (495)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~g~~~~~~~f~~~sFDrVLlDaPCSglG~rp~l~~~~~t~~~l 454 (495)
...+||.|++|||--+= +.+..
T Consensus 287 -----------------------------------------------~g~~fDlIilDPPsF~r-----------~k~~~ 308 (393)
T COG1092 287 -----------------------------------------------RGEKFDLIILDPPSFAR-----------SKKQE 308 (393)
T ss_pred -----------------------------------------------cCCcccEEEECCccccc-----------Ccccc
Confidence 12479999999993222 22333
Q ss_pred HHhHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCcCcc
Q 011036 455 RNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENE 491 (495)
Q Consensus 455 ~~~a~~Qrrll~~A~~lLkpGG~LVYSTCTi~p~ENE 491 (495)
.+..+-..+|+..|.++|+|||+|+.|||+-.....+
T Consensus 309 ~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~ 345 (393)
T COG1092 309 FSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDL 345 (393)
T ss_pred hhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHH
Confidence 4555667899999999999999999999998876653
No 16
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.64 E-value=9.8e-16 Score=155.14 Aligned_cols=163 Identities=24% Similarity=0.336 Sum_probs=122.2
Q ss_pred cccceeeecCCcccccCCccccccccEEEccccHHHHHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCCh
Q 011036 217 ASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296 (495)
Q Consensus 217 ~p~GIaVe~~~~v~~lp~~~~~~~G~i~lQ~l~S~v~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~ 296 (495)
.+..+.|++++..|.++...++++|.|+.|.....++.... .|.+|||+||.+||.+.+.|. ++..+|+.+|.|.
T Consensus 82 ~~~~~~v~E~gl~f~v~l~~gqktGlFlDqR~nR~~v~~~~---~gkrvLnlFsYTGgfsv~Aa~--gGA~~v~~VD~S~ 156 (286)
T PF10672_consen 82 PPEFFTVEENGLKFRVDLTDGQKTGLFLDQRENRKWVRKYA---KGKRVLNLFSYTGGFSVAAAA--GGAKEVVSVDSSK 156 (286)
T ss_dssp -SSEEEEEETTEEEEEESSSSSSTSS-GGGHHHHHHHHHHC---TTCEEEEET-TTTHHHHHHHH--TTESEEEEEES-H
T ss_pred CCCceEEEECCEEEEEEcCCCCcceEcHHHHhhHHHHHHHc---CCCceEEecCCCCHHHHHHHH--CCCCEEEEEeCCH
Confidence 35567788888889999888999999999999998887765 389999999999999988554 6667999999999
Q ss_pred HHHHHHHHHHHHhCCC--ceEEEEcchhHHHHhhCCCCCCCCccCCCCCccccccccccccccccccchhccCCCCCCcc
Q 011036 297 NKVMDIQKLAAEMGLK--CITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSC 374 (495)
Q Consensus 297 ~kv~~i~~~a~~~gl~--~i~~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (495)
..+..+++|++.+|++ .++++..|+++.+..
T Consensus 157 ~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~----------------------------------------------- 189 (286)
T PF10672_consen 157 RALEWAKENAALNGLDLDRHRFIQGDVFKFLKR----------------------------------------------- 189 (286)
T ss_dssp HHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHH-----------------------------------------------
T ss_pred HHHHHHHHHHHHcCCCccceEEEecCHHHHHHH-----------------------------------------------
Confidence 9999999999999975 689999999986521
Q ss_pred cccccccccccccccchhhhhhhhhhccCCCCCCccCCCCccCCCCCCCCCccEEEEcCCCCCCCCcccchhhhhcHHHH
Q 011036 375 KEKVSNEKGVERTYVSKADTRKNMRRMRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSL 454 (495)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~g~~~~~~~f~~~sFDrVLlDaPCSglG~rp~l~~~~~t~~~l 454 (495)
+++ ..+||.|++|||--+-| ....
T Consensus 190 -------------------~~~--------------------------~~~fD~IIlDPPsF~k~--------~~~~--- 213 (286)
T PF10672_consen 190 -------------------LKK--------------------------GGRFDLIILDPPSFAKS--------KFDL--- 213 (286)
T ss_dssp -------------------HHH--------------------------TT-EEEEEE--SSEESS--------TCEH---
T ss_pred -------------------Hhc--------------------------CCCCCEEEECCCCCCCC--------HHHH---
Confidence 111 13799999999965432 1111
Q ss_pred HHhHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCcCc
Q 011036 455 RNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGEN 490 (495)
Q Consensus 455 ~~~a~~Qrrll~~A~~lLkpGG~LVYSTCTi~p~EN 490 (495)
.+-..+|+..|.++|+|||.|+.||||-....+
T Consensus 214 ---~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~~~ 246 (286)
T PF10672_consen 214 ---ERDYKKLLRRAMKLLKPGGLLLTCSCSHHISPD 246 (286)
T ss_dssp ---HHHHHHHHHHHHHTEEEEEEEEEEE--TTS-HH
T ss_pred ---HHHHHHHHHHHHHhcCCCCEEEEEcCCcccCHH
Confidence 234568999999999999999999999876654
No 17
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.57 E-value=2.9e-14 Score=160.60 Aligned_cols=165 Identities=18% Similarity=0.178 Sum_probs=130.9
Q ss_pred ccceeeecCCcccccCCccccccccEEEccccHHHHHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChH
Q 011036 218 SEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHN 297 (495)
Q Consensus 218 p~GIaVe~~~~v~~lp~~~~~~~G~i~lQ~l~S~v~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~ 297 (495)
+..+.+++++-.|.+....++++|.|+.|.....+...+. +|.+|||+|||+|+.+.++|. ++..+|+++|.|+.
T Consensus 498 ~~~~~v~e~g~~f~v~~~~~~~tG~flDqr~~R~~~~~~~---~g~rVLDlf~gtG~~sl~aa~--~Ga~~V~~vD~s~~ 572 (702)
T PRK11783 498 GEFLEVTEYGAKLLVNLTDYLDTGLFLDHRPTRRMIGQMA---KGKDFLNLFAYTGTASVHAAL--GGAKSTTTVDMSNT 572 (702)
T ss_pred CceEEEEECCEEEEEEcCCCCcceECHHHHHHHHHHHHhc---CCCeEEEcCCCCCHHHHHHHH--CCCCEEEEEeCCHH
Confidence 4456677777788888778889999999988887776655 488999999999999999887 34558999999999
Q ss_pred HHHHHHHHHHHhCCC--ceEEEEcchhHHHHhhCCCCCCCCccCCCCCccccccccccccccccccchhccCCCCCCccc
Q 011036 298 KVMDIQKLAAEMGLK--CITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCK 375 (495)
Q Consensus 298 kv~~i~~~a~~~gl~--~i~~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (495)
.+..+++|++.+|+. .++++..|+++.+..
T Consensus 573 al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~------------------------------------------------ 604 (702)
T PRK11783 573 YLEWAERNFALNGLSGRQHRLIQADCLAWLKE------------------------------------------------ 604 (702)
T ss_pred HHHHHHHHHHHhCCCccceEEEEccHHHHHHH------------------------------------------------
Confidence 999999999999986 699999998775310
Q ss_pred ccccccccccccccchhhhhhhhhhccCCCCCCccCCCCccCCCCCCCCCccEEEEcCCCCCCCCcccchhhhhcHHHHH
Q 011036 376 EKVSNEKGVERTYVSKADTRKNMRRMRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLR 455 (495)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~g~~~~~~~f~~~sFDrVLlDaPCSglG~rp~l~~~~~t~~~l~ 455 (495)
+ ..+||.|++|||+.+.+-. ...+.
T Consensus 605 ---------------------------------------------~-~~~fDlIilDPP~f~~~~~---------~~~~~ 629 (702)
T PRK11783 605 ---------------------------------------------A-REQFDLIFIDPPTFSNSKR---------MEDSF 629 (702)
T ss_pred ---------------------------------------------c-CCCcCEEEECCCCCCCCCc---------cchhh
Confidence 0 2469999999998765321 11122
Q ss_pred HhHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCcCc
Q 011036 456 NHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGEN 490 (495)
Q Consensus 456 ~~a~~Qrrll~~A~~lLkpGG~LVYSTCTi~p~EN 490 (495)
...+.+..++..|.++|+|||+|++++|+-+....
T Consensus 630 ~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~ 664 (702)
T PRK11783 630 DVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMD 664 (702)
T ss_pred hHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChh
Confidence 23445678999999999999999999998766543
No 18
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.41 E-value=1.3e-12 Score=129.29 Aligned_cols=77 Identities=21% Similarity=0.247 Sum_probs=68.6
Q ss_pred ccccHHHHHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 246 QNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 246 Q~l~S~v~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
+..+...+...+.+.||++|||+|||+|-.|.+++...+ .|+|+++|+|.+++...++.+...|...|+++.+||..
T Consensus 36 ~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~ 112 (238)
T COG2226 36 HRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAEN 112 (238)
T ss_pred hHHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhh
Confidence 445566677777777999999999999999999999887 89999999999999999999999998889999999855
No 19
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.40 E-value=5.4e-12 Score=120.72 Aligned_cols=74 Identities=26% Similarity=0.364 Sum_probs=65.0
Q ss_pred HHHHHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCC-CceEEEEcchhH
Q 011036 250 SIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALK 323 (495)
Q Consensus 250 S~v~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl-~~i~~~~~Da~~ 323 (495)
..++...+++++|++|||+|||+|..+..+|.+++..+.|+|+|+++.+++.++++++.+|+ .+++++..|+.+
T Consensus 29 r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~ 103 (198)
T PRK00377 29 RALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPE 103 (198)
T ss_pred HHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhh
Confidence 44555667999999999999999999999999887778999999999999999999999994 678888888754
No 20
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.38 E-value=3.9e-12 Score=110.10 Aligned_cols=116 Identities=22% Similarity=0.289 Sum_probs=89.8
Q ss_pred CCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCC-CceEEEEcchhHHHHhhCCCCCCCCccCC
Q 011036 262 GERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALKAVRRKNESNDEPNMCNS 340 (495)
Q Consensus 262 GerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl-~~i~~~~~Da~~~~~~~~~~~~~~~~~~~ 340 (495)
|.+|||+|||.|..+.+++... ..+++++|+++..++.++.+++..++ ..++++..|..+...
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~-------------- 64 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPE-------------- 64 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHH--------------
T ss_pred CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchh--------------
Confidence 6799999999999999988864 68999999999999999999999988 469999999876421
Q ss_pred CCCccccccccccccccccccchhccCCCCCCcccccccccccccccccchhhhhhhhhhccCCCCCCccCCCCccCCCC
Q 011036 341 KDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKVSNEKGVERTYVSKADTRKNMRRMRNGPGRNQCLGGRAENSKG 420 (495)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~g~~~~~~~ 420 (495)
.
T Consensus 65 -------------------------------------------------------------------------------~ 65 (117)
T PF13659_consen 65 -------------------------------------------------------------------------------P 65 (117)
T ss_dssp -------------------------------------------------------------------------------T
T ss_pred -------------------------------------------------------------------------------h
Confidence 1
Q ss_pred CCCCCccEEEEcCCCCCCCCcccchhhhhcHHHHHHhHHHHHHHHHHHHhcCCCCCEEEEEeCC
Q 011036 421 FSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCT 484 (495)
Q Consensus 421 f~~~sFDrVLlDaPCSglG~rp~l~~~~~t~~~l~~~a~~Qrrll~~A~~lLkpGG~LVYSTCT 484 (495)
+..++||.|+.|||.......+. ...+...++++++.++|||||++++.+|.
T Consensus 66 ~~~~~~D~Iv~npP~~~~~~~~~------------~~~~~~~~~~~~~~~~L~~gG~~~~~~~~ 117 (117)
T PF13659_consen 66 LPDGKFDLIVTNPPYGPRSGDKA------------ALRRLYSRFLEAAARLLKPGGVLVFITPA 117 (117)
T ss_dssp CTTT-EEEEEE--STTSBTT----------------GGCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred ccCceeEEEEECCCCccccccch------------hhHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 23468999999999865421111 11115568999999999999999999873
No 21
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.38 E-value=1e-12 Score=129.64 Aligned_cols=75 Identities=27% Similarity=0.268 Sum_probs=55.3
Q ss_pred cHHHHHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 249 PSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 249 ~S~v~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
....+...+.+++|++|||+|||+|--|..|+...+..|+|+++|.|+.++..+++.++..+..+|+++..|+..
T Consensus 35 wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~ 109 (233)
T PF01209_consen 35 WRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAED 109 (233)
T ss_dssp --SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB
T ss_pred HHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHH
Confidence 334566677899999999999999999999999888889999999999999999999999998899999999754
No 22
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.38 E-value=7.3e-12 Score=129.10 Aligned_cols=125 Identities=19% Similarity=0.227 Sum_probs=97.7
Q ss_pred HhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhHHHHhhCCCCC
Q 011036 254 AHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESND 333 (495)
Q Consensus 254 ~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~~~~~~~~~~~ 333 (495)
+.++++++|++|||.|||+|+.+..++. + ...|+++|++..++..+++|++..|+.++.++..|+.+.
T Consensus 175 ~~l~~~~~g~~vLDp~cGtG~~lieaa~-~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l--------- 242 (329)
T TIGR01177 175 VNLARVTEGDRVLDPFCGTGGFLIEAGL-M--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKL--------- 242 (329)
T ss_pred HHHhCCCCcCEEEECCCCCCHHHHHHHH-h--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcC---------
Confidence 4456789999999999999999877554 4 368999999999999999999999998888888887541
Q ss_pred CCCccCCCCCccccccccccccccccccchhccCCCCCCcccccccccccccccccchhhhhhhhhhccCCCCCCccCCC
Q 011036 334 EPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKVSNEKGVERTYVSKADTRKNMRRMRNGPGRNQCLGG 413 (495)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~g 413 (495)
T Consensus 243 -------------------------------------------------------------------------------- 242 (329)
T TIGR01177 243 -------------------------------------------------------------------------------- 242 (329)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccCCCCCCCCCccEEEEcCCCCCCCCcccchhhhhcHHHHHHhHHHHHHHHHHHHhcCCCCCEEEEEeCCCCC
Q 011036 414 RAENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINP 487 (495)
Q Consensus 414 ~~~~~~~f~~~sFDrVLlDaPCSglG~rp~l~~~~~t~~~l~~~a~~Qrrll~~A~~lLkpGG~LVYSTCTi~p 487 (495)
++..++||.|++||||....... ......++.++|..+.+.|||||.++|.+++-..
T Consensus 243 ------~~~~~~~D~Iv~dPPyg~~~~~~-----------~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~~ 299 (329)
T TIGR01177 243 ------PLSSESVDAIATDPPYGRSTTAA-----------GDGLESLYERSLEEFHEVLKSEGWIVYAVPTRID 299 (329)
T ss_pred ------CcccCCCCEEEECCCCcCccccc-----------CCchHHHHHHHHHHHHHHccCCcEEEEEEcCCCC
Confidence 12245899999999985421110 0123456789999999999999999999987643
No 23
>PTZ00146 fibrillarin; Provisional
Probab=99.34 E-value=8.9e-12 Score=126.50 Aligned_cols=64 Identities=28% Similarity=0.358 Sum_probs=55.7
Q ss_pred cCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchh
Q 011036 257 LDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (495)
Q Consensus 257 LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (495)
+.++||++|||+|||||.+|.|+|.+++++|.|+|+|.|+..+.++.+.+++. ++|.++..|+.
T Consensus 128 l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--~NI~~I~~Da~ 191 (293)
T PTZ00146 128 IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--PNIVPIIEDAR 191 (293)
T ss_pred eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCCEEEECCcc
Confidence 56799999999999999999999999998999999999988777777777643 67888888864
No 24
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.33 E-value=5.4e-12 Score=108.23 Aligned_cols=60 Identities=37% Similarity=0.406 Sum_probs=53.2
Q ss_pred CCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCC-CceEEEEcch
Q 011036 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDA 321 (495)
Q Consensus 261 pGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl-~~i~~~~~Da 321 (495)
||.+|||++||+|..+..++.+. ...+|+|+|.|+..+..+++++++.+. .+|+++..|+
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~ 61 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA 61 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC
T ss_pred CCCEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc
Confidence 68999999999999999999843 457899999999999999999977765 5799999887
No 25
>PRK14967 putative methyltransferase; Provisional
Probab=99.31 E-value=3e-11 Score=117.71 Aligned_cols=63 Identities=29% Similarity=0.357 Sum_probs=52.7
Q ss_pred cCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchh
Q 011036 257 LDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (495)
Q Consensus 257 LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (495)
+.+++|++|||+|||+|..+..++.+ +.++|+++|+|+.++..++++++.+++. +.++..|..
T Consensus 32 ~~~~~~~~vLDlGcG~G~~~~~la~~--~~~~v~~vD~s~~~l~~a~~n~~~~~~~-~~~~~~d~~ 94 (223)
T PRK14967 32 EGLGPGRRVLDLCTGSGALAVAAAAA--GAGSVTAVDISRRAVRSARLNALLAGVD-VDVRRGDWA 94 (223)
T ss_pred cccCCCCeEEEecCCHHHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHhCCe-eEEEECchh
Confidence 35678999999999999999988874 3469999999999999999999988873 666666653
No 26
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.31 E-value=2.8e-11 Score=117.30 Aligned_cols=71 Identities=17% Similarity=0.335 Sum_probs=64.2
Q ss_pred HHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 253 ~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
....|++++|++|||++||+|..|..+|.+.+..|.|+++|+++..+..++++++++|+++++++..|+..
T Consensus 69 ~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~ 139 (215)
T TIGR00080 69 MTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQ 139 (215)
T ss_pred HHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCccc
Confidence 45567899999999999999999999999887778999999999999999999999999889988888643
No 27
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.31 E-value=2.9e-11 Score=113.57 Aligned_cols=136 Identities=18% Similarity=0.251 Sum_probs=98.0
Q ss_pred cHHHHHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhHHHHhh
Q 011036 249 PSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRK 328 (495)
Q Consensus 249 ~S~v~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~~~~~~ 328 (495)
-+++..+.++..++.+|||+|||+|..+..++... .+|+++|.|+..+..++++++..++ .++++..|..+.
T Consensus 7 d~~~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~---- 78 (179)
T TIGR00537 7 DSLLLEANLRELKPDDVLEIGAGTGLVAIRLKGKG---KCILTTDINPFAVKELRENAKLNNV-GLDVVMTDLFKG---- 78 (179)
T ss_pred cHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEcccccc----
Confidence 34566666777778899999999999999988742 2899999999999999999988876 466666664320
Q ss_pred CCCCCCCCccCCCCCccccccccccccccccccchhccCCCCCCcccccccccccccccccchhhhhhhhhhccCCCCCC
Q 011036 329 NESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKVSNEKGVERTYVSKADTRKNMRRMRNGPGRN 408 (495)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~ 408 (495)
T Consensus 79 -------------------------------------------------------------------------------- 78 (179)
T TIGR00537 79 -------------------------------------------------------------------------------- 78 (179)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCccCCCCCCCCCccEEEEcCCCCCCCCcccc--hhhhhcHHHHHHhHHHHHHHHHHHHhcCCCCCEEEEEeCCCC
Q 011036 409 QCLGGRAENSKGFSPNSFDRVLLDAPCSALGLRPRL--FAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTIN 486 (495)
Q Consensus 409 ~~~~g~~~~~~~f~~~sFDrVLlDaPCSglG~rp~l--~~~~~t~~~l~~~a~~Qrrll~~A~~lLkpGG~LVYSTCTi~ 486 (495)
.+.+||.|+++||+....-.... +. .........-...+.++|.++.++|||||++++.+++.+
T Consensus 79 -------------~~~~fD~Vi~n~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~ 144 (179)
T TIGR00537 79 -------------VRGKFDVILFNPPYLPLEDDLRRGDWL-DVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN 144 (179)
T ss_pred -------------cCCcccEEEECCCCCCCcchhcccchh-hhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC
Confidence 12479999999998655321110 00 000000111234578899999999999999999998876
No 28
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.30 E-value=3.9e-11 Score=114.16 Aligned_cols=76 Identities=29% Similarity=0.420 Sum_probs=70.5
Q ss_pred cHHHHHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhHHH
Q 011036 249 PSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAV 325 (495)
Q Consensus 249 ~S~v~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~~~ 325 (495)
-..++...|.|+||++++|.+||+|+-|..+| ++.+.|+|+|+|+++.++..+++|++++|+++++.+.+||.+.+
T Consensus 22 IRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L 97 (187)
T COG2242 22 IRALTLSKLRPRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEAL 97 (187)
T ss_pred HHHHHHHhhCCCCCCEEEEeCCCccHHHHHHH-HhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhh
Confidence 45677788999999999999999999999999 78899999999999999999999999999999999999997754
No 29
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.29 E-value=1.8e-11 Score=114.68 Aligned_cols=75 Identities=23% Similarity=0.275 Sum_probs=63.4
Q ss_pred ccHHHHHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 248 LPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 248 l~S~v~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
..+.+.+..+...++.+|||+|||+|.-+.+++... ...+|+++|++...+..++++++.+++..++++..|.++
T Consensus 18 ~~t~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~-~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~ 92 (170)
T PF05175_consen 18 AGTRLLLDNLPKHKGGRVLDLGCGSGVISLALAKRG-PDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFE 92 (170)
T ss_dssp HHHHHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTS-TCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTT
T ss_pred HHHHHHHHHHhhccCCeEEEecCChHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccc
Confidence 456566666666688999999999999999999864 446799999999999999999999999888888887644
No 30
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.29 E-value=5.7e-11 Score=113.28 Aligned_cols=82 Identities=18% Similarity=0.238 Sum_probs=71.4
Q ss_pred ccEEEccccHHHHHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcc
Q 011036 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320 (495)
Q Consensus 241 G~i~lQ~l~S~v~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~D 320 (495)
|.-..|+..+.+....+++++|++|||+|||+|..|..+|.+. +.++|+|+|+|+.++..++++++++|+.+++++..|
T Consensus 20 ~~p~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d 98 (196)
T PRK07402 20 GIPLTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGS 98 (196)
T ss_pred CCCCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECc
Confidence 4446677778777888899999999999999999999998754 458999999999999999999999999889999988
Q ss_pred hhH
Q 011036 321 ALK 323 (495)
Q Consensus 321 a~~ 323 (495)
+..
T Consensus 99 ~~~ 101 (196)
T PRK07402 99 APE 101 (196)
T ss_pred hHH
Confidence 755
No 31
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.29 E-value=4.2e-11 Score=119.34 Aligned_cols=126 Identities=22% Similarity=0.234 Sum_probs=92.6
Q ss_pred CCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhHHHHhhCCCCCCCCccCC
Q 011036 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNS 340 (495)
Q Consensus 261 pGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~~~~~~~~~~~~~~~~~~ 340 (495)
++.+|||+|||+|..+..++..+.+ .+|+|+|+|+..+..+++|++.+|. +++..|.++.+.
T Consensus 86 ~~~~vLDlg~GsG~i~l~la~~~~~-~~v~~vDis~~al~~A~~N~~~~~~---~~~~~D~~~~l~-------------- 147 (251)
T TIGR03704 86 GTLVVVDLCCGSGAVGAALAAALDG-IELHAADIDPAAVRCARRNLADAGG---TVHEGDLYDALP-------------- 147 (251)
T ss_pred CCCEEEEecCchHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCC---EEEEeechhhcc--------------
Confidence 3568999999999999999987543 5899999999999999999998773 566777644210
Q ss_pred CCCccccccccccccccccccchhccCCCCCCcccccccccccccccccchhhhhhhhhhccCCCCCCccCCCCccCCCC
Q 011036 341 KDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKVSNEKGVERTYVSKADTRKNMRRMRNGPGRNQCLGGRAENSKG 420 (495)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~g~~~~~~~ 420 (495)
..
T Consensus 148 ------------------------------------------------------------------------------~~ 149 (251)
T TIGR03704 148 ------------------------------------------------------------------------------TA 149 (251)
T ss_pred ------------------------------------------------------------------------------hh
Confidence 00
Q ss_pred CCCCCccEEEEcCCCCCCCCc----ccchhhhhcHHHH---HHhHHHHHHHHHHHHhcCCCCCEEEEEeCC
Q 011036 421 FSPNSFDRVLLDAPCSALGLR----PRLFAAEETIQSL---RNHGKYQRRMFDQAVQLVRPGGIIVYSTCT 484 (495)
Q Consensus 421 f~~~sFDrVLlDaPCSglG~r----p~l~~~~~t~~~l---~~~a~~Qrrll~~A~~lLkpGG~LVYSTCT 484 (495)
...+||.|++||||...+.. |.... .+....+ .+....+++++..|.++|||||.+++.+..
T Consensus 150 -~~~~fDlVv~NPPy~~~~~~~~~~~e~~~-~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~ 218 (251)
T TIGR03704 150 -LRGRVDILAANAPYVPTDAIALMPPEARD-HEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSE 218 (251)
T ss_pred -cCCCEeEEEECCCCCCchhhhcCCHHHHh-CCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 12469999999999887642 22211 1111112 234567999999999999999999998754
No 32
>PRK04266 fibrillarin; Provisional
Probab=99.29 E-value=4e-11 Score=117.93 Aligned_cols=72 Identities=25% Similarity=0.363 Sum_probs=60.8
Q ss_pred cccHHHHHhh--cCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcch
Q 011036 247 NLPSIVTAHA--LDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321 (495)
Q Consensus 247 ~l~S~v~~~~--LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da 321 (495)
.+.+.+.+.+ ++++||++|||+|||+|+.|.++|..++ .|.|+|+|+++.+++.+.+++++. ++|.++..|+
T Consensus 56 ~~~~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~--~nv~~i~~D~ 129 (226)
T PRK04266 56 KLAAAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEER--KNIIPILADA 129 (226)
T ss_pred chHHHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhc--CCcEEEECCC
Confidence 3455555544 8999999999999999999999999886 789999999999999998888764 6788887775
No 33
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.28 E-value=7.3e-11 Score=119.64 Aligned_cols=66 Identities=32% Similarity=0.405 Sum_probs=56.1
Q ss_pred cCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCC-ceEEEEcchhH
Q 011036 257 LDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALK 323 (495)
Q Consensus 257 LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~-~i~~~~~Da~~ 323 (495)
++++++.+|||+|||+|..+..+|.... ..+|+|+|+|+..+..++++++++|+. .|+++..|+++
T Consensus 117 ~~~~~~~~vLDlG~GsG~i~~~la~~~~-~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~ 183 (284)
T TIGR03533 117 LEPEPVKRILDLCTGSGCIAIACAYAFP-EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA 183 (284)
T ss_pred hccCCCCEEEEEeCchhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh
Confidence 3445667999999999999999998653 479999999999999999999999985 58888888643
No 34
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.26 E-value=1.4e-10 Score=100.54 Aligned_cols=67 Identities=27% Similarity=0.371 Sum_probs=58.3
Q ss_pred HhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcch
Q 011036 254 AHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321 (495)
Q Consensus 254 ~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da 321 (495)
...++++++++|||++||+|..+..++..+.+ ++|+++|.|..++..++++++.+++..++++..|+
T Consensus 12 ~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~ 78 (124)
T TIGR02469 12 LSKLRLRPGDVLWDIGAGSGSITIEAARLVPN-GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDA 78 (124)
T ss_pred HHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCC-ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccc
Confidence 44567788999999999999999999997654 89999999999999999999999887777777665
No 35
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.21 E-value=1.8e-10 Score=118.18 Aligned_cols=66 Identities=18% Similarity=0.202 Sum_probs=58.0
Q ss_pred hcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhHH
Q 011036 256 ALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (495)
Q Consensus 256 ~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~~ 324 (495)
.++..++.+|||+|||.|..+..+|.. ..+|+|+|.|+..+..++++++.+|+++++++..|+.+.
T Consensus 168 ~l~~~~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~ 233 (315)
T PRK03522 168 WVRELPPRSMWDLFCGVGGFGLHCATP---GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQF 233 (315)
T ss_pred HHHhcCCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHH
Confidence 445456799999999999999999983 368999999999999999999999998899999998663
No 36
>PRK14968 putative methyltransferase; Provisional
Probab=99.20 E-value=3.7e-10 Score=105.32 Aligned_cols=69 Identities=22% Similarity=0.200 Sum_probs=56.7
Q ss_pred HHHHHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCc--eEEEEcch
Q 011036 250 SIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC--ITTYKLDA 321 (495)
Q Consensus 250 S~v~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~--i~~~~~Da 321 (495)
+.+....+...+|.+|||+|||.|..+..++.. ...|+++|+|+..+..++++++.+++.. +.++..|.
T Consensus 12 ~~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~ 82 (188)
T PRK14968 12 SFLLAENAVDKKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDL 82 (188)
T ss_pred HHHHHHhhhccCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccc
Confidence 445555666688999999999999999999886 4789999999999999999999888765 66666654
No 37
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.20 E-value=1.9e-10 Score=111.66 Aligned_cols=73 Identities=23% Similarity=0.329 Sum_probs=63.9
Q ss_pred HHHHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 251 IVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 251 ~v~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
......+++++|.+|||++||+|..+..++...+..++|+++|.|+..+..++++++..++++++++..|+..
T Consensus 35 ~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~ 107 (231)
T TIGR02752 35 KDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAME 107 (231)
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhc
Confidence 3455677889999999999999999999999877778999999999999999999998888888888888643
No 38
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.20 E-value=2.2e-10 Score=115.82 Aligned_cols=62 Identities=23% Similarity=0.224 Sum_probs=53.6
Q ss_pred CCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCc-eEEEEcchhH
Q 011036 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDALK 323 (495)
Q Consensus 261 pGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~-i~~~~~Da~~ 323 (495)
++.+|||+|||+|..+..++.... ..+|+|+|+|...+..++++++++++.. +++++.|.++
T Consensus 114 ~~~~vLDlG~GsG~i~l~la~~~~-~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~ 176 (284)
T TIGR00536 114 PILHILDLGTGSGCIALALAYEFP-NAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE 176 (284)
T ss_pred CCCEEEEEeccHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc
Confidence 347999999999999999998653 4699999999999999999999999864 8888887643
No 39
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.18 E-value=2.4e-10 Score=117.15 Aligned_cols=61 Identities=30% Similarity=0.341 Sum_probs=53.4
Q ss_pred CCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCC-ceEEEEcchhH
Q 011036 262 GERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALK 323 (495)
Q Consensus 262 GerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~-~i~~~~~Da~~ 323 (495)
+.+|||+|||+|..+.+++... +..+|+|+|+|+..+..++++++.+|+. .|+++..|.++
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~-p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~ 195 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA 195 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh
Confidence 4799999999999999998864 4579999999999999999999999985 58888888644
No 40
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.18 E-value=3.6e-10 Score=109.06 Aligned_cols=70 Identities=17% Similarity=0.311 Sum_probs=62.1
Q ss_pred HHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCc-eEEEEcchh
Q 011036 253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDAL 322 (495)
Q Consensus 253 ~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~-i~~~~~Da~ 322 (495)
....|++++|++|||++||+|..|..++.+++..|+|+++|+++..+..++++++++|+.+ ++++..|+.
T Consensus 64 ~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~ 134 (205)
T PRK13944 64 MCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGK 134 (205)
T ss_pred HHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcc
Confidence 3456789999999999999999999999998777899999999999999999999999864 788887764
No 41
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.18 E-value=3.1e-10 Score=110.13 Aligned_cols=70 Identities=19% Similarity=0.346 Sum_probs=63.9
Q ss_pred HHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchh
Q 011036 253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (495)
Q Consensus 253 ~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (495)
....+++++|++|||++||+|..|..++.+++..|+|+++|+++..+..++++++++|+.+|++...|+.
T Consensus 68 ~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~ 137 (212)
T PRK13942 68 MCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGT 137 (212)
T ss_pred HHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcc
Confidence 4556789999999999999999999999998877899999999999999999999999988988888864
No 42
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.18 E-value=3.5e-10 Score=112.46 Aligned_cols=64 Identities=23% Similarity=0.138 Sum_probs=52.9
Q ss_pred cCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcch
Q 011036 257 LDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321 (495)
Q Consensus 257 LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da 321 (495)
+...++.+|||+|||+|..+..++..+ +...|+++|+|+.++..++++++.....++.++..|.
T Consensus 104 ~~~~~~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~ 167 (275)
T PRK09328 104 LLLKEPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDW 167 (275)
T ss_pred ccccCCCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccc
Confidence 345678899999999999999999876 4589999999999999999998833345677777765
No 43
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.18 E-value=3.4e-10 Score=110.64 Aligned_cols=62 Identities=29% Similarity=0.322 Sum_probs=54.2
Q ss_pred CCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 261 pGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
.+.+|||+|||+|..+..++.... ...|+++|.++.++..++++++..++.++.++..|+++
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~ 148 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERP-DARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE 148 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc
Confidence 356899999999999999998764 46999999999999999999999999888888887643
No 44
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.16 E-value=3e-10 Score=121.79 Aligned_cols=66 Identities=32% Similarity=0.418 Sum_probs=59.7
Q ss_pred hhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 255 HALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 255 ~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
..+++++|++|||+|||+|..+..+|... .+|+|+|.|+.++..++++++.+|+++++++..|+.+
T Consensus 291 ~~l~~~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~ 356 (443)
T PRK13168 291 EWLDPQPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEE 356 (443)
T ss_pred HHhcCCCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHH
Confidence 44577899999999999999999998753 6899999999999999999999999999999999865
No 45
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.15 E-value=2.8e-10 Score=103.93 Aligned_cols=64 Identities=25% Similarity=0.318 Sum_probs=57.7
Q ss_pred CCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 260 qpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
+.+.+|||++||.|..+..++......++|+++|.|+.++..++++++++++++++++..|+..
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~ 65 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIED 65 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTC
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhc
Confidence 5688999999999999999996566678999999999999999999999999999999998754
No 46
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.14 E-value=4e-10 Score=112.81 Aligned_cols=71 Identities=20% Similarity=0.276 Sum_probs=56.6
Q ss_pred HHHHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHH---hCCCceEEEEcch
Q 011036 251 IVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAE---MGLKCITTYKLDA 321 (495)
Q Consensus 251 ~v~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~---~gl~~i~~~~~Da 321 (495)
..+...+++++|++|||+|||+|..+..++..++..++|+|+|.|+.++..+++.+.. .+..+|+++..|+
T Consensus 63 ~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~ 136 (261)
T PLN02233 63 RMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDA 136 (261)
T ss_pred HHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEccc
Confidence 3445567888999999999999999998888777778999999999999988776542 2344677777765
No 47
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.13 E-value=3.5e-10 Score=112.96 Aligned_cols=65 Identities=18% Similarity=0.215 Sum_probs=58.1
Q ss_pred cCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcch
Q 011036 257 LDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321 (495)
Q Consensus 257 LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da 321 (495)
.++++|++|||++||+|..+..++.+++..++|+++|.|+.++..++++++.+|+.+++++..|+
T Consensus 73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~ 137 (272)
T PRK11873 73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEI 137 (272)
T ss_pred ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcch
Confidence 46789999999999999888888888887889999999999999999999999988888877775
No 48
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.12 E-value=3.5e-10 Score=108.95 Aligned_cols=62 Identities=16% Similarity=0.109 Sum_probs=55.8
Q ss_pred CCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 261 pGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
++.+|||+|||+|..+..+|..+ +.+.|+|+|.|+.++..++++++..+++++.++..|+..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~ 101 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVE 101 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHH
Confidence 67899999999999999999876 347899999999999999999999999889999999843
No 49
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.12 E-value=6.9e-10 Score=118.38 Aligned_cols=68 Identities=21% Similarity=0.150 Sum_probs=60.6
Q ss_pred HhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhHH
Q 011036 254 AHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (495)
Q Consensus 254 ~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~~ 324 (495)
...++++++++|||+|||+|..+..+|... .+|+|+|.++..+..++++++.+|+.+++++..|+.+.
T Consensus 285 ~~~l~~~~~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~ 352 (431)
T TIGR00479 285 LEALELQGEELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETV 352 (431)
T ss_pred HHHhccCCCCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHH
Confidence 345577889999999999999999998753 58999999999999999999999999999999998664
No 50
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.12 E-value=5.6e-10 Score=105.80 Aligned_cols=56 Identities=27% Similarity=0.343 Sum_probs=44.8
Q ss_pred hcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchh
Q 011036 256 ALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (495)
Q Consensus 256 ~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (495)
.-.+++|++|||+|||||+.|.+++..+...++|+|+|+|+.+ +...++++..|+.
T Consensus 27 ~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~i~~~~~d~~ 82 (188)
T TIGR00438 27 FKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIENVDFIRGDFT 82 (188)
T ss_pred hcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCCceEEEeeCC
Confidence 3456889999999999999999999988777899999999853 2345666666653
No 51
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.11 E-value=1e-09 Score=105.78 Aligned_cols=67 Identities=19% Similarity=0.371 Sum_probs=59.1
Q ss_pred HHHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcch
Q 011036 252 VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321 (495)
Q Consensus 252 v~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da 321 (495)
.....++++++++|||+|||+|..|..++.+. ++|+++|.++..+..+++++++.|+.++++...|+
T Consensus 69 ~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~ 135 (212)
T PRK00312 69 RMTELLELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDG 135 (212)
T ss_pred HHHHhcCCCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCc
Confidence 34567889999999999999999999888864 58999999999999999999999998888888775
No 52
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.11 E-value=4.7e-10 Score=111.81 Aligned_cols=81 Identities=21% Similarity=0.288 Sum_probs=63.0
Q ss_pred cccEEEccccHHHHHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCC-ceEEEE
Q 011036 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYK 318 (495)
Q Consensus 240 ~G~i~lQ~l~S~v~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~-~i~~~~ 318 (495)
+.-+|.-|.+ +....||+.||.+||+.+.|+|+.|.+||..+++.|+|+.+|....+...+++++++.|+. +|++..
T Consensus 21 tQIiYpkD~~--~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~ 98 (247)
T PF08704_consen 21 TQIIYPKDIS--YILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHH 98 (247)
T ss_dssp S----HHHHH--HHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEE
T ss_pred cceeeCchHH--HHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEe
Confidence 4455666644 4457799999999999999999999999999999999999999999999999999999996 688888
Q ss_pred cchh
Q 011036 319 LDAL 322 (495)
Q Consensus 319 ~Da~ 322 (495)
.|..
T Consensus 99 ~Dv~ 102 (247)
T PF08704_consen 99 RDVC 102 (247)
T ss_dssp S-GG
T ss_pred ccee
Confidence 8863
No 53
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.10 E-value=1.2e-09 Score=103.25 Aligned_cols=75 Identities=16% Similarity=0.214 Sum_probs=62.6
Q ss_pred ccccHHHHHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcch
Q 011036 246 QNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321 (495)
Q Consensus 246 Q~l~S~v~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da 321 (495)
++.....+...|++.++.+|||+|||+|..+..++... +.++|+++|+|+..+..++++++++++..++++..|+
T Consensus 16 ~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~ 90 (187)
T PRK08287 16 KEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEA 90 (187)
T ss_pred hHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCc
Confidence 33344455667888899999999999999999998864 5589999999999999999999999887787777664
No 54
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=1.2e-09 Score=116.77 Aligned_cols=78 Identities=27% Similarity=0.287 Sum_probs=67.5
Q ss_pred EEccccHHH------HHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEE
Q 011036 244 FLQNLPSIV------TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTY 317 (495)
Q Consensus 244 ~lQ~l~S~v------~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~ 317 (495)
|.|.-+.+. +...++.+++++|||+.||-|+.|.++|. ...+|+|+|+++..++.+++||+.+|++++.+.
T Consensus 270 F~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~---~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~ 346 (432)
T COG2265 270 FFQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAK---RVKKVHGVEISPEAVEAAQENAAANGIDNVEFI 346 (432)
T ss_pred ceecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcc---cCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEE
Confidence 567655543 34567788999999999999999999994 457999999999999999999999999999999
Q ss_pred EcchhHH
Q 011036 318 KLDALKA 324 (495)
Q Consensus 318 ~~Da~~~ 324 (495)
.+|+.+.
T Consensus 347 ~~~ae~~ 353 (432)
T COG2265 347 AGDAEEF 353 (432)
T ss_pred eCCHHHH
Confidence 9998775
No 55
>PLN02244 tocopherol O-methyltransferase
Probab=99.05 E-value=1.6e-09 Score=112.40 Aligned_cols=61 Identities=26% Similarity=0.327 Sum_probs=53.7
Q ss_pred CCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCC-ceEEEEcchh
Q 011036 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDAL 322 (495)
Q Consensus 260 qpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~-~i~~~~~Da~ 322 (495)
+++.+|||++||+|+.+.+++... ..+|+++|.|+..+..+++++++.|+. .|++...|+.
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~ 178 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADAL 178 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcc
Confidence 789999999999999999999865 369999999999999999999998875 5888888763
No 56
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.04 E-value=3.8e-09 Score=104.35 Aligned_cols=71 Identities=18% Similarity=0.207 Sum_probs=63.0
Q ss_pred hhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCC-ceEEEEcchhHHH
Q 011036 255 HALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALKAV 325 (495)
Q Consensus 255 ~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~-~i~~~~~Da~~~~ 325 (495)
.++...++.+|||+|+|.|.-+..||..+.+.|+|+++|+++..+..+++++++.|+. .|+++.+|+.+.+
T Consensus 62 ~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L 133 (234)
T PLN02781 62 MLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSAL 133 (234)
T ss_pred HHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHH
Confidence 3444556789999999999999999998888899999999999999999999999985 6999999998754
No 57
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.04 E-value=2.2e-09 Score=102.84 Aligned_cols=63 Identities=32% Similarity=0.352 Sum_probs=55.8
Q ss_pred CCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 260 qpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
++|.+|||+|||+|..+..+|... +.++|+++|.|+.++..++++++.++++++++++.|+.+
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~ 106 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEE 106 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhh
Confidence 348999999999999999988754 468999999999999999999999999889999888744
No 58
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.02 E-value=1.1e-09 Score=106.60 Aligned_cols=76 Identities=26% Similarity=0.421 Sum_probs=65.0
Q ss_pred ccHHHH--HhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 248 LPSIVT--AHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 248 l~S~v~--~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
.|++++ ..+|+++||++|||+++|+|-.|..||.|.+..|.|+++|+++.-+..++++.+++|+.+|.+...|...
T Consensus 57 ~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~ 134 (209)
T PF01135_consen 57 APSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSE 134 (209)
T ss_dssp -HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGG
T ss_pred HHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhh
Confidence 466654 5678999999999999999999999999999999999999999999999999999999999999998744
No 59
>PF01472 PUA: PUA domain; InterPro: IPR002478 The PUA (PseudoUridine synthase and Archaeosine transglycosylase) domain was named after the proteins in which it was first found []. PUA is a highly conserved RNA-binding motif found in a wide range of archaeal, bacterial and eukaryotic proteins, including enzymes that catalyse tRNA and rRNA post-transcriptional modifications, proteins involved in ribosome biogenesis and translation, as well as in enzymes involved in proline biosynthesis [, ]. The structures of several PUA-RNA complexes reveal a common RNA recognition surface, but also some versatility in the way in which the motif binds to RNA []. PUA motifs are involved in dyskeratosis congenita and cancer, pointing to links between RNA metabolism and human diseases [].; GO: 0003723 RNA binding; PDB: 1ZE2_A 1ZE1_A 1R3E_A 2AB4_A 3R90_D 2J5T_A 2J5V_B 1Q7H_A 2APO_A 2RFK_A ....
Probab=99.01 E-value=3.3e-10 Score=92.60 Aligned_cols=71 Identities=35% Similarity=0.561 Sum_probs=61.7
Q ss_pred CeEEEccchHHHHHcccccccCceeeccCCccCCCeEEEEEcccCCcCCCCCccccccccccccCCCCCCcccCCCceEe
Q 011036 124 KEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIG 203 (495)
Q Consensus 124 k~ViVd~~~~eAVLrGA~v~aPGIl~~~~~i~~Gd~VaV~~~l~~~~~~~~w~~~~~rg~~l~~~~~~~~~~~r~~l~Vg 203 (495)
+.|+||+.|++++++||+||+|||+.++.+|++||.|.|+ +.++.+++
T Consensus 1 g~vvVd~~a~~~i~~Ga~L~~~GV~~~~~~f~~gd~V~i~--------------------------------~~~g~~ia 48 (74)
T PF01472_consen 1 GRVVVDDGAVEAILNGASLFAPGVVEVDGDFRKGDEVAIV--------------------------------DEDGEVIA 48 (74)
T ss_dssp EEEEE-HHHHHHHHTTSEEEGGGEEEEETT--TTSEEEEE--------------------------------ETTSSEEE
T ss_pred CEEEECccHHHHHHcCCCcchHHhEECCCCcCCCCEEEEE--------------------------------cCCCeEEE
Confidence 4699999999999999999999999999999999999999 33578999
Q ss_pred ecccccccccccccccceeeecC
Q 011036 204 QGTAMMSRAGIFRASEGIAVDMH 226 (495)
Q Consensus 204 ~GialmSr~elf~~p~GIaVe~~ 226 (495)
.|++.|++.++....+|.+++..
T Consensus 49 ~G~a~~ss~ei~~~~~g~~~~~~ 71 (74)
T PF01472_consen 49 VGRANMSSEEIKKMKKGKAVKIR 71 (74)
T ss_dssp EEEESSTHHHHHHHSSSEEEEEE
T ss_pred EEEEecCHHHHHHHcCCcEehhh
Confidence 99999999999998888887653
No 60
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=3.2e-09 Score=105.37 Aligned_cols=77 Identities=21% Similarity=0.251 Sum_probs=66.0
Q ss_pred EEEccccHHHHHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCc-eEEEEcch
Q 011036 243 IFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDA 321 (495)
Q Consensus 243 i~lQ~l~S~v~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~-i~~~~~Da 321 (495)
++.-| |...+..++..||+||||.++|+|..|..||...++.|+|+.+|+.+...+.+++|+++.|+.+ ++....|.
T Consensus 78 IyPKD--~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv 155 (256)
T COG2519 78 IYPKD--AGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDV 155 (256)
T ss_pred ecCCC--HHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccc
Confidence 44444 3455677899999999999999999999999989999999999999999999999999999875 66555554
No 61
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.00 E-value=3.1e-09 Score=103.22 Aligned_cols=54 Identities=24% Similarity=0.287 Sum_probs=44.8
Q ss_pred CCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 259 pqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
.++|.+|||+|||||+.|..+++.++..|.|+|+|+++. ..+..++++++|+..
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~~~v~~i~~D~~~ 102 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DPIVGVDFLQGDFRD 102 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cCCCCcEEEecCCCC
Confidence 367899999999999999999999887899999999971 134557888888654
No 62
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.00 E-value=4.3e-09 Score=110.89 Aligned_cols=72 Identities=15% Similarity=0.025 Sum_probs=55.9
Q ss_pred cHHHHHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCC---ceEEEEcch
Q 011036 249 PSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK---CITTYKLDA 321 (495)
Q Consensus 249 ~S~v~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~---~i~~~~~Da 321 (495)
.+.+....|+...+.+|||+|||.|-.+..++.. .++.+|+++|.|...++.++++++.++.. .++++..|.
T Consensus 216 GtrllL~~lp~~~~~~VLDLGCGtGvi~i~la~~-~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~ 290 (378)
T PRK15001 216 GARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDK-NPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNA 290 (378)
T ss_pred HHHHHHHhCCcccCCeEEEEeccccHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccc
Confidence 3444555555555679999999999999998886 35689999999999999999999888743 456665554
No 63
>PLN02476 O-methyltransferase
Probab=98.99 E-value=8.9e-09 Score=104.31 Aligned_cols=75 Identities=19% Similarity=0.203 Sum_probs=66.0
Q ss_pred HHHHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCC-ceEEEEcchhHHH
Q 011036 251 IVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALKAV 325 (495)
Q Consensus 251 ~v~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~-~i~~~~~Da~~~~ 325 (495)
.+...++...+..+||+++++.|.-|.++|..|.+.|.|+++|+++.+...+++++++.|+. .|+++.+|+.+.+
T Consensus 108 ~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L 183 (278)
T PLN02476 108 QLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESL 183 (278)
T ss_pred HHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHH
Confidence 34444555566789999999999999999999988899999999999999999999999996 7999999998865
No 64
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.99 E-value=4.9e-09 Score=104.34 Aligned_cols=74 Identities=23% Similarity=0.188 Sum_probs=64.2
Q ss_pred cHHHHHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCC-ceEEEEcchhH
Q 011036 249 PSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALK 323 (495)
Q Consensus 249 ~S~v~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~-~i~~~~~Da~~ 323 (495)
-+++.+....+....+|||+|||.|.-...+|+...+ .+|+++|+++...+.++++.+.+++. .|+++..|...
T Consensus 32 DaiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~ 106 (248)
T COG4123 32 DAILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKE 106 (248)
T ss_pred HHHHHHhhcccccCCeEEEecCCcCHHHHHHhccCCC-CcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHH
Confidence 4677777888877999999999999999999987544 89999999999999999999998885 58888888754
No 65
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.98 E-value=2.2e-09 Score=110.86 Aligned_cols=132 Identities=21% Similarity=0.265 Sum_probs=100.5
Q ss_pred HHHHHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEc-chhHHHHhh
Q 011036 250 SIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKL-DALKAVRRK 328 (495)
Q Consensus 250 S~v~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~-Da~~~~~~~ 328 (495)
|-+.+.+..+++|+.|||=.||+||.... |.||+ ..+++.|++..++..++.|.+..|+....+++. ||.+.
T Consensus 186 AR~mVNLa~v~~G~~vlDPFcGTGgiLiE-agl~G--~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~l---- 258 (347)
T COG1041 186 ARAMVNLARVKRGELVLDPFCGTGGILIE-AGLMG--ARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNL---- 258 (347)
T ss_pred HHHHHHHhccccCCEeecCcCCccHHHHh-hhhcC--ceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccC----
Confidence 44566777899999999999999998765 45674 689999999999999999999999877766666 76441
Q ss_pred CCCCCCCCccCCCCCccccccccccccccccccchhccCCCCCCcccccccccccccccccchhhhhhhhhhccCCCCCC
Q 011036 329 NESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKVSNEKGVERTYVSKADTRKNMRRMRNGPGRN 408 (495)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~ 408 (495)
T Consensus 259 -------------------------------------------------------------------------------- 258 (347)
T COG1041 259 -------------------------------------------------------------------------------- 258 (347)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCccCCCCCCCCCccEEEEcCCCCCCCCcccchhhhhcHHHHHHhHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCc
Q 011036 409 QCLGGRAENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPG 488 (495)
Q Consensus 409 ~~~~g~~~~~~~f~~~sFDrVLlDaPCSglG~rp~l~~~~~t~~~l~~~a~~Qrrll~~A~~lLkpGG~LVYSTCTi~p~ 488 (495)
+|+.++||.|..|||..-. +.-....+..+.+++|+.+.+.||+||.+||.+--....
T Consensus 259 -----------pl~~~~vdaIatDPPYGrs-----------t~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~~~~~ 316 (347)
T COG1041 259 -----------PLRDNSVDAIATDPPYGRS-----------TKIKGEGLDELYEEALESASEVLKPGGRIVFAAPRDPRH 316 (347)
T ss_pred -----------CCCCCccceEEecCCCCcc-----------cccccccHHHHHHHHHHHHHHHhhcCcEEEEecCCcchh
Confidence 2445579999999995222 111111245678999999999999999999988633333
Q ss_pred Cc
Q 011036 489 EN 490 (495)
Q Consensus 489 EN 490 (495)
|+
T Consensus 317 ~~ 318 (347)
T COG1041 317 EL 318 (347)
T ss_pred hH
Confidence 33
No 66
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.97 E-value=1.1e-08 Score=105.80 Aligned_cols=69 Identities=17% Similarity=0.265 Sum_probs=62.3
Q ss_pred hhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 255 HALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 255 ~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
..+++++|++|||+|||+|..+..+|.+.+..|.|+++|+++..+..++++++.+|++++.++..|+.+
T Consensus 74 ~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~ 142 (322)
T PRK13943 74 EWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYY 142 (322)
T ss_pred HhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhh
Confidence 456789999999999999999999999887778999999999999999999999999888888888644
No 67
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.96 E-value=1.9e-09 Score=104.31 Aligned_cols=65 Identities=26% Similarity=0.201 Sum_probs=51.1
Q ss_pred CCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCc-eEEEEcchhHH
Q 011036 259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDALKA 324 (495)
Q Consensus 259 pqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~-i~~~~~Da~~~ 324 (495)
.++|+.||||+||-|..+..+|.. +....|+|+|+++..+.-++++++.+++.+ |.++.+|+.+.
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~-~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~ 164 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKH-GKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREF 164 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHH-T-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG-
T ss_pred CCcceEEEEccCCccHHHHHHhhh-cCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHh
Confidence 578999999999999999999984 445689999999999999999999999976 88999998653
No 68
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.96 E-value=7e-09 Score=107.99 Aligned_cols=71 Identities=17% Similarity=0.200 Sum_probs=54.8
Q ss_pred ccHHHHHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcc
Q 011036 248 LPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320 (495)
Q Consensus 248 l~S~v~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~D 320 (495)
..|.+....|.+....+|||++||.|..+..++... +..+|+++|.|...+..++++++++++.. +++..|
T Consensus 183 ~gt~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~-p~~~v~~vDis~~Al~~A~~nl~~n~l~~-~~~~~D 253 (342)
T PRK09489 183 VGSQLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHS-PKIRLTLSDVSAAALESSRATLAANGLEG-EVFASN 253 (342)
T ss_pred HHHHHHHHhccccCCCeEEEeccCcCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCC-EEEEcc
Confidence 345555555655556699999999999999998863 45689999999999999999999988753 334444
No 69
>TIGR00451 unchar_dom_2 uncharacterized domain 2. This uncharacterized domain is found a number of enzymes and uncharacterized proteins, often at the C-terminus. It is found in some but not all members of a family of related tRNA-guanine transglycosylases (tgt), which exchange a guanine base for some modified base without breaking the phosphodiester backbone of the tRNA. It is also found in rRNA pseudouridine synthase, another enzyme of RNA base modification not otherwise homologous to tgt. It is found, again at the C-terminus, in two putative glutamate 5-kinases. It is also found in a family of small, uncharacterized archaeal proteins consisting mostly of this domain.
Probab=98.96 E-value=6.1e-10 Score=97.23 Aligned_cols=88 Identities=25% Similarity=0.300 Sum_probs=73.6
Q ss_pred eEEEeCCCCccccCCCCCCCCCCeEEEccchHHHHHcccccccCceeeccCCccCCCeEEEEEcccCCcCCCCCcccccc
Q 011036 102 VVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITR 181 (495)
Q Consensus 102 ~l~i~~~gp~~~~~~~~~~~~~k~ViVd~~~~eAVLrGA~v~aPGIl~~~~~i~~Gd~VaV~~~l~~~~~~~~w~~~~~r 181 (495)
.++....|++.++. ..+.|+||.+|++++++||+||+|||++++.++++||.|+|+.
T Consensus 15 ~~~ptl~~~~~~~~------~~~~v~vd~~a~~~l~~Ga~L~~pGV~~~~~~~~~gd~V~I~~----------------- 71 (107)
T TIGR00451 15 KVIPSLKGALKLME------DKKIVVVDNGAVKFLKNGADVMRPGIVDADEDIKEGDDVVVVD----------------- 71 (107)
T ss_pred eEcccHHHHHhChh------hCCEEEEChhHHHHHHCCccccCCeeEeCCCCcCCCCEEEEEE-----------------
Confidence 34444566655432 4799999999999999999999999999999999999999992
Q ss_pred ccccccCCCCCCcccCCCceEeecccccccccccccccceeeecC
Q 011036 182 GTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMH 226 (495)
Q Consensus 182 g~~l~~~~~~~~~~~r~~l~Vg~GialmSr~elf~~p~GIaVe~~ 226 (495)
+.++.++|.|++.+|++++....+|++++..
T Consensus 72 --------------~~~~~~iavG~a~~~s~e~~~~~~G~~v~~~ 102 (107)
T TIGR00451 72 --------------ENKDRPLAVGIALMSGEEMKEMDKGKAVKNI 102 (107)
T ss_pred --------------CCCCeEEEEEEEecCHHHHHhcCCCeEEEEE
Confidence 2236899999999999999988999988764
No 70
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.96 E-value=8.2e-09 Score=109.66 Aligned_cols=72 Identities=18% Similarity=0.151 Sum_probs=57.5
Q ss_pred HHHHHhhcC-CCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 250 SIVTAHALD-PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 250 S~v~~~~Ld-pqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
..++..+++ .+++.+|||+|||+|..+..++... +..+|+|+|+|+..+..+++++++++. ++++++.|.++
T Consensus 239 E~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~AreNa~~~g~-rV~fi~gDl~e 311 (423)
T PRK14966 239 EHLVEAVLARLPENGRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETARKNAADLGA-RVEFAHGSWFD 311 (423)
T ss_pred HHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEcchhc
Confidence 344444443 3567899999999999998888653 457999999999999999999999886 68888888643
No 71
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.95 E-value=9.5e-09 Score=108.12 Aligned_cols=65 Identities=17% Similarity=0.216 Sum_probs=57.0
Q ss_pred cCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhHH
Q 011036 257 LDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (495)
Q Consensus 257 LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~~ 324 (495)
++..++.+|||++||.|..+..+|.. ..+|+|+|+++..++.++++++.+|+++++++..|+.+.
T Consensus 229 l~~~~~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~ 293 (374)
T TIGR02085 229 VREIPVTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKF 293 (374)
T ss_pred HHhcCCCEEEEccCCccHHHHHHhhc---CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHH
Confidence 44456789999999999999988852 368999999999999999999999998999999998664
No 72
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.95 E-value=1.3e-08 Score=97.53 Aligned_cols=71 Identities=18% Similarity=0.208 Sum_probs=60.0
Q ss_pred ccHHHHHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcch
Q 011036 248 LPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321 (495)
Q Consensus 248 l~S~v~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da 321 (495)
.|+......+...++.+|||++||+|.-+.++|.. ...|+|+|.|+..+..++++++..+++++++...|.
T Consensus 17 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~ 87 (197)
T PRK11207 17 RTHSEVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDL 87 (197)
T ss_pred CChHHHHHhcccCCCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecCh
Confidence 35556667777778899999999999999999873 358999999999999999999998888887777775
No 73
>PRK08317 hypothetical protein; Provisional
Probab=98.95 E-value=9e-09 Score=98.71 Aligned_cols=68 Identities=31% Similarity=0.365 Sum_probs=53.1
Q ss_pred HHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcch
Q 011036 253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321 (495)
Q Consensus 253 ~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da 321 (495)
....+++.++.+|||+|||+|..+..++..++..++|+++|.|..++..++++... ...++.+...|+
T Consensus 11 ~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~d~ 78 (241)
T PRK08317 11 TFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG-LGPNVEFVRGDA 78 (241)
T ss_pred HHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC-CCCceEEEeccc
Confidence 34567888999999999999999999999886678999999999999888776222 223455555554
No 74
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=98.94 E-value=3.8e-09 Score=104.73 Aligned_cols=75 Identities=20% Similarity=0.199 Sum_probs=63.1
Q ss_pred cHHHHHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCC-----cEEEEEeCChHHHHHHHHHHHHhCCC---ceEEEEcc
Q 011036 249 PSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDE-----GEVVAVDRSHNKVMDIQKLAAEMGLK---CITTYKLD 320 (495)
Q Consensus 249 ~S~v~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~-----G~ViA~D~s~~kv~~i~~~a~~~gl~---~i~~~~~D 320 (495)
+--+.+..|+|.+|.++||||+|+|-.|.-|......+ +.|+.+|+|+.++...++.+++.++. |+.++..|
T Consensus 88 WKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~d 167 (296)
T KOG1540|consen 88 WKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGD 167 (296)
T ss_pred HHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCC
Confidence 34456677899999999999999999999999887765 89999999999999999999988874 36677767
Q ss_pred hhH
Q 011036 321 ALK 323 (495)
Q Consensus 321 a~~ 323 (495)
|.+
T Consensus 168 AE~ 170 (296)
T KOG1540|consen 168 AED 170 (296)
T ss_pred ccc
Confidence 643
No 75
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=9.7e-09 Score=99.69 Aligned_cols=81 Identities=20% Similarity=0.314 Sum_probs=68.3
Q ss_pred cccEEEccccHHHHHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEc
Q 011036 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKL 319 (495)
Q Consensus 240 ~G~i~lQ~l~S~v~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~ 319 (495)
.|....|-..-.....+|+++||++||+++||+|--|..||++. |+|+++|+...-+..++++.+.+|+.+|.+.+.
T Consensus 51 ~gqtis~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~g 127 (209)
T COG2518 51 CGQTISAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGYENVTVRHG 127 (209)
T ss_pred CCceecCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEEC
Confidence 45555553333345678999999999999999999999999986 499999999999999999999999999999988
Q ss_pred chhH
Q 011036 320 DALK 323 (495)
Q Consensus 320 Da~~ 323 (495)
|..+
T Consensus 128 DG~~ 131 (209)
T COG2518 128 DGSK 131 (209)
T ss_pred Cccc
Confidence 8633
No 76
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.93 E-value=1.1e-08 Score=107.78 Aligned_cols=67 Identities=10% Similarity=0.102 Sum_probs=60.1
Q ss_pred hcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 256 ALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 256 ~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
.+.+..+..+||+|||.|..+.++|... +...++|+|++...+..+.+.+++.|+++|.++..|+..
T Consensus 117 ~~~~~~~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ 183 (390)
T PRK14121 117 FISKNQEKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARL 183 (390)
T ss_pred HhcCCCCCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHH
Confidence 3455667899999999999999999976 568999999999999999999999999999999999865
No 77
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.93 E-value=8.2e-09 Score=112.66 Aligned_cols=62 Identities=18% Similarity=0.164 Sum_probs=52.8
Q ss_pred CCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCC-ceEEEEcchhH
Q 011036 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALK 323 (495)
Q Consensus 261 pGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~-~i~~~~~Da~~ 323 (495)
++.+|||+|||+|..+..+|..+. ..+|+|+|+|+..+..++++++.+|+. .+.++..|.+.
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p-~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~ 200 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELP-NANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE 200 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh
Confidence 467999999999999999887653 479999999999999999999999875 57777777643
No 78
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=98.93 E-value=1.5e-08 Score=96.30 Aligned_cols=62 Identities=23% Similarity=0.360 Sum_probs=54.5
Q ss_pred CCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 261 pGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
+|.+|||++||+|.-+..+|.+ .+.++|+|+|.|+.++..++++++++|+++|+++..|+.+
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~-~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~ 103 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIA-RPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAED 103 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHH-CCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhh
Confidence 4889999999999988888864 4568999999999999999999999999889999888643
No 79
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.92 E-value=5.9e-09 Score=99.69 Aligned_cols=63 Identities=17% Similarity=0.177 Sum_probs=56.6
Q ss_pred CCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhHH
Q 011036 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (495)
Q Consensus 261 pGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~~ 324 (495)
.+.+|||+|||+|..+.++|... +.+.|+|+|++..++..+++++++.|+.+|.++..|+.+.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~ 78 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANEL 78 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHH
Confidence 45699999999999999999865 4579999999999999999999999999999999998764
No 80
>PRK14560 putative RNA-binding protein; Provisional
Probab=98.92 E-value=1.3e-09 Score=101.78 Aligned_cols=74 Identities=27% Similarity=0.444 Sum_probs=66.7
Q ss_pred CCCeEEEccchHHHHHcccccccCceeeccCCccCCCeEEEEEcccCCcCCCCCccccccccccccCCCCCCcccCCCce
Q 011036 122 PPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLY 201 (495)
Q Consensus 122 ~~k~ViVd~~~~eAVLrGA~v~aPGIl~~~~~i~~Gd~VaV~~~l~~~~~~~~w~~~~~rg~~l~~~~~~~~~~~r~~l~ 201 (495)
..+.|+||..|++++++||+||+|||+.++.++++||.|+|+. +.++.+
T Consensus 75 ~~~~v~Vd~~a~~~i~~Ga~lm~pGV~~~~~~~~~Gd~V~I~~-------------------------------~~~~~~ 123 (160)
T PRK14560 75 EKRRVVVDAGAVKFVSNGADVMAPGIVEADEDIKEGDIVFVVE-------------------------------ETHGKP 123 (160)
T ss_pred cCCEEEEeccHHHHHHCCCceecCeeeeCCCCCCCCCEEEEEE-------------------------------CCCCeE
Confidence 4689999999999999999999999999999999999999992 223688
Q ss_pred EeecccccccccccccccceeeecC
Q 011036 202 IGQGTAMMSRAGIFRASEGIAVDMH 226 (495)
Q Consensus 202 Vg~GialmSr~elf~~p~GIaVe~~ 226 (495)
+|+|++.||.+++....+|.+++.-
T Consensus 124 vavG~~~~s~~ei~~~~kG~~v~~~ 148 (160)
T PRK14560 124 LAVGRALMDGDEMVEEKKGKAVKNI 148 (160)
T ss_pred EEEEEEeeCHHHHhhcCCceEEEEE
Confidence 9999999999999888999998863
No 81
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.91 E-value=5.2e-09 Score=99.90 Aligned_cols=64 Identities=30% Similarity=0.385 Sum_probs=52.2
Q ss_pred CCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCc-eEEEEcchhHHHH
Q 011036 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDALKAVR 326 (495)
Q Consensus 261 pGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~-i~~~~~Da~~~~~ 326 (495)
+|.+|||+|||+|..+...+ -++..+|+.+|.++..+..+++|++.+++.. +++++.|+++.+.
T Consensus 42 ~g~~vLDLFaGSGalGlEAL--SRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~ 106 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEAL--SRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLL 106 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHH--HTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHH
T ss_pred CCCeEEEcCCccCccHHHHH--hcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHH
Confidence 58999999999999887644 4677899999999999999999999999986 9999999988753
No 82
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.91 E-value=9.8e-09 Score=107.23 Aligned_cols=67 Identities=24% Similarity=0.278 Sum_probs=52.9
Q ss_pred HHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 253 ~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
+..+++++++ +|||++||.|..|..+|.. ..+|+|+|.++..+..+++||+.+|+++++++.+++.+
T Consensus 189 ~~~~l~~~~~-~vlDlycG~G~fsl~la~~---~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~ 255 (352)
T PF05958_consen 189 ALEWLDLSKG-DVLDLYCGVGTFSLPLAKK---AKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAED 255 (352)
T ss_dssp HHHHCTT-TT-EEEEES-TTTCCHHHHHCC---SSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHH
T ss_pred HHHHhhcCCC-cEEEEeecCCHHHHHHHhh---CCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccc
Confidence 3456777776 8999999999999999874 36899999999999999999999999999999988755
No 83
>COG2016 Predicted RNA-binding protein (contains PUA domain) [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=1.9e-09 Score=100.03 Aligned_cols=73 Identities=30% Similarity=0.457 Sum_probs=66.7
Q ss_pred CCeEEEccchHHHHHcccccccCceeeccCCccCCCeEEEEEcccCCcCCCCCccccccccccccCCCCCCcccCCCceE
Q 011036 123 PKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYI 202 (495)
Q Consensus 123 ~k~ViVd~~~~eAVLrGA~v~aPGIl~~~~~i~~Gd~VaV~~~l~~~~~~~~w~~~~~rg~~l~~~~~~~~~~~r~~l~V 202 (495)
...|+||++|...|++||||++|||++++..|++||.|.|. .++++.++
T Consensus 76 ~~~V~VD~GAvk~v~nGADvM~PGIv~~~~~ik~Gd~VvV~-------------------------------~e~~~~pl 124 (161)
T COG2016 76 KYVVVVDEGAVKFVLNGADVMAPGIVSADGEIKEGDIVVVV-------------------------------DEKKGRPL 124 (161)
T ss_pred ccEEEEcCccHhhhcCCCceeccceeecCCCccCCCEEEEE-------------------------------EcCCCCee
Confidence 34899999999999999999999999999999999999998 25568899
Q ss_pred eecccccccccccccccceeeecC
Q 011036 203 GQGTAMMSRAGIFRASEGIAVDMH 226 (495)
Q Consensus 203 g~GialmSr~elf~~p~GIaVe~~ 226 (495)
++|+++|+..+|....+|.+++.-
T Consensus 125 AVG~alm~~~em~~~~kGkav~~i 148 (161)
T COG2016 125 AVGIALMSGKEMEEKKKGKAVKNI 148 (161)
T ss_pred EEEeeccCHHHHhhhcCCeEEEEE
Confidence 999999999999998999988753
No 84
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.88 E-value=1.9e-08 Score=106.23 Aligned_cols=71 Identities=24% Similarity=0.182 Sum_probs=58.7
Q ss_pred HHhhcCCC-CCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhHH
Q 011036 253 TAHALDPQ-KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (495)
Q Consensus 253 ~~~~Ldpq-pGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~~ 324 (495)
++.++..+ ++++|||++||.|..+..+|...+ ..+|+++|+++..++.+++|++.+|+++++++..|+...
T Consensus 48 v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~ 119 (382)
T PRK04338 48 VLRAFGPKLPRESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANAL 119 (382)
T ss_pred HHHHHHhhcCCCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHH
Confidence 34444433 468999999999999999987654 358999999999999999999999998888888888553
No 85
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.88 E-value=1.9e-08 Score=100.79 Aligned_cols=67 Identities=16% Similarity=0.136 Sum_probs=52.2
Q ss_pred HHHHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcch
Q 011036 251 IVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321 (495)
Q Consensus 251 ~v~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da 321 (495)
..+...+++.|+.+|||++||+|+.+..++... .++|+++|.|+..+..+++++.. ...|.+...|+
T Consensus 42 ~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~--~~~i~~~~~D~ 108 (263)
T PTZ00098 42 TKILSDIELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSD--KNKIEFEANDI 108 (263)
T ss_pred HHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCc--CCceEEEECCc
Confidence 344556788999999999999999998888753 46999999999999888876653 23466666664
No 86
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.86 E-value=2.3e-09 Score=88.06 Aligned_cols=50 Identities=22% Similarity=0.256 Sum_probs=38.0
Q ss_pred EEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcc
Q 011036 266 LDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320 (495)
Q Consensus 266 LDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~D 320 (495)
||++||+|-.+..++.. +..+|+++|.|+..+..++++.+..+. .+...|
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~~~---~~~~~d 50 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNEGV---SFRQGD 50 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTSTE---EEEESB
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccccCc---hheeeh
Confidence 89999999999999986 568999999999999888777664433 344444
No 87
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.86 E-value=3.1e-08 Score=98.15 Aligned_cols=64 Identities=16% Similarity=0.233 Sum_probs=54.3
Q ss_pred CCCCCeEEEecCCCChHHHHHHHhc-CCCcEEEEEeCChHHHHHHHHHHHHhCCC-ceEEEEcchh
Q 011036 259 PQKGERILDMCAAPGGKTTAIASLL-RDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDAL 322 (495)
Q Consensus 259 pqpGerVLDmCAaPGgKT~~iA~lm-~~~G~ViA~D~s~~kv~~i~~~a~~~gl~-~i~~~~~Da~ 322 (495)
++++.+|||++||+|.-+..++..+ .+.++|+++|.|+.++..+++++++.+.. .++++..|+.
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~ 119 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIR 119 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChh
Confidence 3578899999999999998888764 45689999999999999999999988875 5777777753
No 88
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.86 E-value=5.1e-08 Score=92.59 Aligned_cols=72 Identities=15% Similarity=0.133 Sum_probs=51.9
Q ss_pred HHHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCc--------EEEEEeCChHHHHHHHHHHHHhCCCc-eEEEEcchh
Q 011036 252 VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEG--------EVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDAL 322 (495)
Q Consensus 252 v~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G--------~ViA~D~s~~kv~~i~~~a~~~gl~~-i~~~~~Da~ 322 (495)
..+.+.++++|+.|||-+||+|+.....|.+..+.- .+++.|++.+.+..+++|++..|+.. |.+.+.|+.
T Consensus 19 ~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~ 98 (179)
T PF01170_consen 19 ALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDAR 98 (179)
T ss_dssp HHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GG
T ss_pred HHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchh
Confidence 344667889999999999999988777665544433 48999999999999999999999864 778888876
Q ss_pred H
Q 011036 323 K 323 (495)
Q Consensus 323 ~ 323 (495)
+
T Consensus 99 ~ 99 (179)
T PF01170_consen 99 E 99 (179)
T ss_dssp G
T ss_pred h
Confidence 5
No 89
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.86 E-value=2.9e-08 Score=100.68 Aligned_cols=59 Identities=29% Similarity=0.334 Sum_probs=49.4
Q ss_pred eEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 264 RILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 264 rVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
+|||||+|+|.-+..+|... ...+|+|+|+|...+..+++||+++|+.++..+..|.++
T Consensus 113 ~ilDlGTGSG~iai~la~~~-~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~ 171 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEG-PDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFE 171 (280)
T ss_pred cEEEecCChHHHHHHHHhhC-cCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeeccc
Confidence 79999999999998888754 347999999999999999999999998665555555443
No 90
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.85 E-value=2.4e-08 Score=104.72 Aligned_cols=61 Identities=21% Similarity=0.206 Sum_probs=55.1
Q ss_pred CCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhHHH
Q 011036 262 GERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAV 325 (495)
Q Consensus 262 GerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~~~ 325 (495)
+.+|||+|||.|+.+..+|.. ..+|+|+|.++..+..+++|++.+|+++++++..|+.+.+
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~---~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l 267 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARN---FRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFT 267 (362)
T ss_pred CCeEEEEeccccHHHHHHHhh---CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHH
Confidence 357999999999999988874 3589999999999999999999999999999999997754
No 91
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.84 E-value=4.8e-08 Score=94.50 Aligned_cols=63 Identities=17% Similarity=0.104 Sum_probs=54.4
Q ss_pred CCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhHH
Q 011036 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (495)
Q Consensus 260 qpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~~ 324 (495)
.+|.+|||+|||.|..+..++. +...+|+++|++...+..++++++.+|+.+++++..|+.+.
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~ls--r~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~ 114 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALS--RYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSF 114 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHH--cCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHH
Confidence 5688999999999998875433 23579999999999999999999999998899999998664
No 92
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.83 E-value=4.1e-08 Score=97.47 Aligned_cols=61 Identities=20% Similarity=0.250 Sum_probs=52.8
Q ss_pred CCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCC-ceEEEEcchhH
Q 011036 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALK 323 (495)
Q Consensus 260 qpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~-~i~~~~~Da~~ 323 (495)
+++.+|||++||+|..+..++.. ..+|+++|.|+.++..+++++++.|+. +++++..|+..
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~ 104 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQD 104 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHH
Confidence 45789999999999999999874 368999999999999999999999874 58888888754
No 93
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.83 E-value=3.7e-08 Score=97.42 Aligned_cols=71 Identities=13% Similarity=0.167 Sum_probs=54.8
Q ss_pred EccccHHHHHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcch
Q 011036 245 LQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321 (495)
Q Consensus 245 lQ~l~S~v~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da 321 (495)
.|..++......+.+.++.+|||++||+|..|..++... +.++|+++|.|+.++..++++ +.++.++..|+
T Consensus 15 ~~~~~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~-----~~~~~~~~~d~ 85 (258)
T PRK01683 15 ERTRPARDLLARVPLENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSR-----LPDCQFVEADI 85 (258)
T ss_pred HhhcHHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHh-----CCCCeEEECch
Confidence 455566666667778889999999999999999999875 357999999999988776654 23455665554
No 94
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.82 E-value=1.8e-08 Score=101.93 Aligned_cols=68 Identities=21% Similarity=0.232 Sum_probs=53.0
Q ss_pred HHHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCc-eEEEEcch
Q 011036 252 VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDA 321 (495)
Q Consensus 252 v~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~-i~~~~~Da 321 (495)
.....++++||++|||++||-|+.+.++|+.. ...|+++..|+.-+..+++.+++.|+.. +++...|.
T Consensus 53 ~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~ 121 (273)
T PF02353_consen 53 LLCEKLGLKPGDRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDY 121 (273)
T ss_dssp HHHTTTT--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-G
T ss_pred HHHHHhCCCCCCEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeec
Confidence 45667789999999999999999999999965 3689999999999999999999999964 77777664
No 95
>TIGR03684 arCOG00985 arCOG04150 universal archaeal PUA-domain protein. This universal archaeal protein contains a domain possibly associated with RNA binding (pfam01472, TIGR00451).
Probab=98.81 E-value=3.7e-09 Score=97.73 Aligned_cols=74 Identities=23% Similarity=0.407 Sum_probs=67.0
Q ss_pred CCCeEEEccchHHHHHcccccccCceeeccCCccCCCeEEEEEcccCCcCCCCCccccccccccccCCCCCCcccCCCce
Q 011036 122 PPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLY 201 (495)
Q Consensus 122 ~~k~ViVd~~~~eAVLrGA~v~aPGIl~~~~~i~~Gd~VaV~~~l~~~~~~~~w~~~~~rg~~l~~~~~~~~~~~r~~l~ 201 (495)
..+.|+||..|++++++||+||+|||+.++.++++||.|+|+. +.++.+
T Consensus 68 ~~~~v~Vd~~a~~~l~~Ga~lm~pGV~~~~~~~~~Gd~V~I~~-------------------------------~~~~~~ 116 (150)
T TIGR03684 68 DKNRVVVDEGAVKFIINGADIMAPGIVSADPSIKEGDIVFVVD-------------------------------ETHRKP 116 (150)
T ss_pred cCCEEEECccHHHHHhcCcccccCceecCCCCCCCCCEEEEEE-------------------------------CCCCeE
Confidence 5699999999999999999999999999999999999999992 234789
Q ss_pred EeecccccccccccccccceeeecC
Q 011036 202 IGQGTAMMSRAGIFRASEGIAVDMH 226 (495)
Q Consensus 202 Vg~GialmSr~elf~~p~GIaVe~~ 226 (495)
+|+|++.||.+++....+|.++++.
T Consensus 117 vavG~a~~ss~ei~~~~kG~av~~~ 141 (150)
T TIGR03684 117 LAVGIALMDAEEMEEEKKGKAVKNI 141 (150)
T ss_pred EEEEEEeeCHHHHhhcCCCeEEEEE
Confidence 9999999999999888899998764
No 96
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.81 E-value=6.8e-08 Score=78.29 Aligned_cols=58 Identities=29% Similarity=0.263 Sum_probs=45.4
Q ss_pred eEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 264 RILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 264 rVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
+|||++||+|..+..++. ....+++++|.+...+..+++..+..+...++++..|..+
T Consensus 1 ~ildig~G~G~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (107)
T cd02440 1 RVLDLGCGTGALALALAS--GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEE 58 (107)
T ss_pred CeEEEcCCccHHHHHHhc--CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhh
Confidence 589999999999888877 3567999999999998888765555555567777766544
No 97
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.81 E-value=4.3e-08 Score=101.36 Aligned_cols=62 Identities=19% Similarity=0.177 Sum_probs=50.5
Q ss_pred CCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCC-CceEEEEcchh
Q 011036 258 DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDAL 322 (495)
Q Consensus 258 dpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl-~~i~~~~~Da~ 322 (495)
.+.+|.+|||++||.|..+..+|.. .+.|+++|.|..++..+++.++..+. .+|.++..|+.
T Consensus 128 ~~~~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae 190 (322)
T PLN02396 128 KPFEGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAE 190 (322)
T ss_pred cCCCCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHH
Confidence 4567899999999999999888862 36899999999999999888776554 46777777763
No 98
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.79 E-value=5.7e-08 Score=102.37 Aligned_cols=63 Identities=22% Similarity=0.157 Sum_probs=56.1
Q ss_pred CeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhHHH
Q 011036 263 ERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAV 325 (495)
Q Consensus 263 erVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~~~ 325 (495)
-+|||++||+|.-+..++....+..+|+++|+++..+..+++|++.+++.++++++.|+.+.+
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l 108 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVL 108 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHH
Confidence 489999999999999988754455789999999999999999999999988999999987753
No 99
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.78 E-value=6.1e-08 Score=96.18 Aligned_cols=63 Identities=17% Similarity=0.221 Sum_probs=48.3
Q ss_pred HHHHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcch
Q 011036 251 IVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321 (495)
Q Consensus 251 ~v~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da 321 (495)
.-....+.+.++.+|||++||+|..+..++... +.++|+++|.|+.++..+++ . ++.+...|+
T Consensus 19 ~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~----~---~~~~~~~d~ 81 (255)
T PRK14103 19 YDLLARVGAERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARE----R---GVDARTGDV 81 (255)
T ss_pred HHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHh----c---CCcEEEcCh
Confidence 334455677889999999999999999999875 45799999999998876543 2 355566665
No 100
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.77 E-value=9.8e-08 Score=91.34 Aligned_cols=63 Identities=29% Similarity=0.426 Sum_probs=55.3
Q ss_pred CCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCC-ceEEEEcchhHHH
Q 011036 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALKAV 325 (495)
Q Consensus 261 pGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~-~i~~~~~Da~~~~ 325 (495)
.|.++||++||+|+-+...++ ++...++.+|.+...+..+++|++.+++. ..+.++.|+...+
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlS--RGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L 106 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALS--RGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRAL 106 (187)
T ss_pred CCCEEEEecCCccHhHHHHHh--CCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHH
Confidence 489999999999998877544 77889999999999999999999999965 5889999998654
No 101
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.77 E-value=8.1e-08 Score=100.42 Aligned_cols=65 Identities=17% Similarity=0.189 Sum_probs=56.6
Q ss_pred cCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhHHH
Q 011036 257 LDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAV 325 (495)
Q Consensus 257 LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~~~ 325 (495)
+++++ .+|||+|||+|..+..+|... .+|+|+|.+...+..++++++.+|+++++++..|+.+.+
T Consensus 194 ~~~~~-~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~ 258 (353)
T TIGR02143 194 TQGSK-GDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFT 258 (353)
T ss_pred hhcCC-CcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHH
Confidence 34333 479999999999999888753 489999999999999999999999999999999997754
No 102
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.76 E-value=1.3e-07 Score=90.67 Aligned_cols=63 Identities=16% Similarity=0.132 Sum_probs=55.4
Q ss_pred CCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCC-ceEEEEcchhHHH
Q 011036 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALKAV 325 (495)
Q Consensus 261 pGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~-~i~~~~~Da~~~~ 325 (495)
+|.+|||+|||+|..+..++.. +..+|+++|.+...+..+++|++.+++. .+++++.|+++.+
T Consensus 49 ~g~~vLDLfaGsG~lglea~sr--ga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l 112 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSR--GAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRAL 112 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHH
Confidence 4889999999999999887774 4568999999999999999999999986 6899999997753
No 103
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.75 E-value=1.3e-07 Score=92.84 Aligned_cols=73 Identities=23% Similarity=0.247 Sum_probs=63.1
Q ss_pred HHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCc-eEEEE-cchhHHH
Q 011036 253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYK-LDALKAV 325 (495)
Q Consensus 253 ~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~-i~~~~-~Da~~~~ 325 (495)
...++...+..+||.++.+-|--|+.||.-+.+.|+++++|+++.+...++++.++.|+.. |..+. +|+++.+
T Consensus 51 L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l 125 (219)
T COG4122 51 LRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVL 125 (219)
T ss_pred HHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHH
Confidence 3344455577899999999999999999999878999999999999999999999999987 77777 5888754
No 104
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.75 E-value=1.9e-07 Score=89.49 Aligned_cols=67 Identities=16% Similarity=0.179 Sum_probs=53.3
Q ss_pred HHHHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcch
Q 011036 251 IVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321 (495)
Q Consensus 251 ~v~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da 321 (495)
......+.+.++.+|||++||.|.-+..+|.. ...|+|+|.|+..+..++++++..|++ +.....|.
T Consensus 20 ~~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~~~~-v~~~~~d~ 86 (195)
T TIGR00477 20 SAVREAVKTVAPCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKARENLP-LRTDAYDI 86 (195)
T ss_pred HHHHHHhccCCCCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHhCCC-ceeEeccc
Confidence 34445566666789999999999999999873 369999999999999999999888875 55555543
No 105
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.75 E-value=4.7e-08 Score=96.41 Aligned_cols=58 Identities=21% Similarity=0.164 Sum_probs=45.6
Q ss_pred EccccHHHHHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHH
Q 011036 245 LQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKL 305 (495)
Q Consensus 245 lQ~l~S~v~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~ 305 (495)
+|..........|...++.+|||++||+|..+.+++.. ...|+++|.|+.++..++++
T Consensus 26 ~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~ 83 (251)
T PRK10258 26 LQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQK 83 (251)
T ss_pred HHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhh
Confidence 46666666666676667889999999999998888763 36899999999988766554
No 106
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.74 E-value=5.1e-08 Score=101.24 Aligned_cols=63 Identities=24% Similarity=0.216 Sum_probs=56.6
Q ss_pred CCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCc-eEEEEcchhHH
Q 011036 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDALKA 324 (495)
Q Consensus 260 qpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~-i~~~~~Da~~~ 324 (495)
.+||+||||.||-|-.|..+|..- .-+|+|+|+++..+.-+++|++.+++.. |.++.+|+...
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g--~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev 250 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKG--RPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREV 250 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcC--CceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHh
Confidence 459999999999999999999853 3349999999999999999999999987 89999998774
No 107
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.73 E-value=1.6e-07 Score=95.41 Aligned_cols=52 Identities=21% Similarity=0.201 Sum_probs=44.9
Q ss_pred CCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCC
Q 011036 259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK 312 (495)
Q Consensus 259 pqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~ 312 (495)
.++|.+|||++||+|..+..++.+ +.++|+|+|+|+.++..++++++.+++.
T Consensus 157 ~~~g~~VLDvGcGsG~lai~aa~~--g~~~V~avDid~~al~~a~~n~~~n~~~ 208 (288)
T TIGR00406 157 DLKDKNVIDVGCGSGILSIAALKL--GAAKVVGIDIDPLAVESARKNAELNQVS 208 (288)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHcCCC
Confidence 467899999999999888776653 3469999999999999999999988875
No 108
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.71 E-value=2.6e-08 Score=84.81 Aligned_cols=58 Identities=28% Similarity=0.256 Sum_probs=47.0
Q ss_pred EEEecCCCChHHHHHHHhc--CCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 265 ILDMCAAPGGKTTAIASLL--RDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 265 VLDmCAaPGgKT~~iA~lm--~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
|||+|||+|..+..++... +....++++|+|+.++..++++.++.+. .++++..|+.+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~-~~~~~~~D~~~ 60 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP-KVRFVQADARD 60 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT-TSEEEESCTTC
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC-ceEEEECCHhH
Confidence 7999999999999999987 2236999999999999999999988777 78888888754
No 109
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.70 E-value=1.5e-07 Score=90.73 Aligned_cols=71 Identities=25% Similarity=0.337 Sum_probs=56.6
Q ss_pred HHHHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCC-ceEEEEcch
Q 011036 251 IVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDA 321 (495)
Q Consensus 251 ~v~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~-~i~~~~~Da 321 (495)
......+++.++.+|||+|||+|..+..++.......+|+++|.++..+..++++++..++. .+.++..|+
T Consensus 41 ~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~ 112 (239)
T PRK00216 41 RKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDA 112 (239)
T ss_pred HHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEeccc
Confidence 34556677788999999999999999999987754589999999999999998888765543 356666554
No 110
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.69 E-value=1.7e-07 Score=99.13 Aligned_cols=63 Identities=27% Similarity=0.238 Sum_probs=50.3
Q ss_pred HHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcc
Q 011036 253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320 (495)
Q Consensus 253 ~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~D 320 (495)
....++++||++|||+|||+|+.+.++|... ..+|+++|.|+.++..++++++ ++ .+++...|
T Consensus 159 l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~--~l-~v~~~~~D 221 (383)
T PRK11705 159 ICRKLQLKPGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCA--GL-PVEIRLQD 221 (383)
T ss_pred HHHHhCCCCCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhc--cC-eEEEEECc
Confidence 4456788999999999999999999999865 3589999999999998888775 32 24444444
No 111
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.69 E-value=1.7e-07 Score=95.42 Aligned_cols=73 Identities=19% Similarity=0.227 Sum_probs=62.1
Q ss_pred cccHHHHHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcc
Q 011036 247 NLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320 (495)
Q Consensus 247 ~l~S~v~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~D 320 (495)
|..|.+...-|.+.++.+|||+|||-|-.+..+|..- ++.+|+-+|.|...|+..+++++.+++++..++..|
T Consensus 144 D~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~-p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~ 216 (300)
T COG2813 144 DKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKS-PQAKLTLVDVNARAVESARKNLAANGVENTEVWASN 216 (300)
T ss_pred ChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhC-CCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEec
Confidence 5678888888888878899999999999999999875 478999999999999999999999998865344433
No 112
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.69 E-value=1e-07 Score=92.66 Aligned_cols=63 Identities=19% Similarity=0.306 Sum_probs=58.0
Q ss_pred CeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCC-ceEEEEcchhHHH
Q 011036 263 ERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALKAV 325 (495)
Q Consensus 263 erVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~-~i~~~~~Da~~~~ 325 (495)
.+||+++++.|--|.+||.-+.+.|+|+.+|+++.+...+++++++.|+. .|+++..|+.+.+
T Consensus 47 k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l 110 (205)
T PF01596_consen 47 KRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVL 110 (205)
T ss_dssp SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHH
T ss_pred ceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhH
Confidence 48999999999999999998888899999999999999999999999985 6999999998865
No 113
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.69 E-value=1.3e-07 Score=101.90 Aligned_cols=66 Identities=23% Similarity=0.217 Sum_probs=51.4
Q ss_pred HHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcch
Q 011036 253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321 (495)
Q Consensus 253 ~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da 321 (495)
....+.+++|.+|||+|||+|+.+..+|... ..+|+|+|+|+..+..+++++...+ ..+++...|+
T Consensus 258 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~~-~~v~~~~~d~ 323 (475)
T PLN02336 258 FVDKLDLKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGRK-CSVEFEVADC 323 (475)
T ss_pred HHHhcCCCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcCC-CceEEEEcCc
Confidence 4445567889999999999999998888865 3589999999999988887765332 2466666665
No 114
>PHA03412 putative methyltransferase; Provisional
Probab=98.67 E-value=7.6e-08 Score=95.35 Aligned_cols=57 Identities=23% Similarity=0.334 Sum_probs=44.7
Q ss_pred CCCCeEEEecCCCChHHHHHHHhcC--CCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcch
Q 011036 260 QKGERILDMCAAPGGKTTAIASLLR--DEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321 (495)
Q Consensus 260 qpGerVLDmCAaPGgKT~~iA~lm~--~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da 321 (495)
..+.+|||+|||+|..+..++..|. ...+|+|+|+++..+..++++.. .+.++..|+
T Consensus 48 ~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~-----~~~~~~~D~ 106 (241)
T PHA03412 48 CTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP-----EATWINADA 106 (241)
T ss_pred cCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc-----CCEEEEcch
Confidence 3477999999999999999998763 35699999999999887776532 355666664
No 115
>PHA03411 putative methyltransferase; Provisional
Probab=98.67 E-value=2.7e-07 Score=93.30 Aligned_cols=61 Identities=18% Similarity=0.245 Sum_probs=47.0
Q ss_pred cCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 257 LDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 257 LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
++++++.+|||+|||+|..+.+++.... ..+|+++|+|+..+..++++ +..+.++..|++.
T Consensus 60 ~~~~~~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n-----~~~v~~v~~D~~e 120 (279)
T PHA03411 60 IDAHCTGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRL-----LPEAEWITSDVFE 120 (279)
T ss_pred hccccCCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHh-----CcCCEEEECchhh
Confidence 4666778999999999999988877543 36899999999888766654 2356777777644
No 116
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.66 E-value=1.2e-07 Score=93.73 Aligned_cols=50 Identities=26% Similarity=0.328 Sum_probs=44.9
Q ss_pred CCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCC
Q 011036 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK 312 (495)
Q Consensus 260 qpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~ 312 (495)
-+|.+|||++||-|..+.-||++ + ..|+|+|.++..++.++..|.+.|+.
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~-G--a~VtgiD~se~~I~~Ak~ha~e~gv~ 107 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL-G--ASVTGIDASEKPIEVAKLHALESGVN 107 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC-C--CeeEEecCChHHHHHHHHhhhhcccc
Confidence 47999999999999999998884 2 79999999999999999999998875
No 117
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.66 E-value=3.7e-08 Score=92.59 Aligned_cols=40 Identities=40% Similarity=0.516 Sum_probs=33.6
Q ss_pred CCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChH
Q 011036 258 DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHN 297 (495)
Q Consensus 258 dpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~ 297 (495)
++.++.+|||+||||||+|..+....+..+.|+|+|..+.
T Consensus 20 ~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 20 KPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp -TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred CcccccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence 4445689999999999999999998767899999999975
No 118
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.65 E-value=2.8e-07 Score=93.41 Aligned_cols=68 Identities=24% Similarity=0.202 Sum_probs=60.1
Q ss_pred HHHHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCC-ceEEEEcc
Q 011036 251 IVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLD 320 (495)
Q Consensus 251 ~v~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~-~i~~~~~D 320 (495)
-.+..-|..+||++|||++||-|+...++|+.. ..+|++++.|.+....+++.++++|+. +|++...|
T Consensus 62 ~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d 130 (283)
T COG2230 62 DLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQD 130 (283)
T ss_pred HHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecc
Confidence 355677899999999999999999999999976 378999999999999999999999997 67766655
No 119
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.63 E-value=4.9e-07 Score=88.78 Aligned_cols=64 Identities=13% Similarity=0.125 Sum_probs=53.3
Q ss_pred CCCCeEEEecCCCChHHHHHHHhcC-CCcEEEEEeCChHHHHHHHHHHHHhCC-CceEEEEcchhH
Q 011036 260 QKGERILDMCAAPGGKTTAIASLLR-DEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALK 323 (495)
Q Consensus 260 qpGerVLDmCAaPGgKT~~iA~lm~-~~G~ViA~D~s~~kv~~i~~~a~~~gl-~~i~~~~~Da~~ 323 (495)
.++.+|||++||+|..+..++.... ..++|+++|.|+.++..++++++..+. ..++++..|+.+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~ 117 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRH 117 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhh
Confidence 5788999999999999999988753 468999999999999999999887764 357777777643
No 120
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.61 E-value=5.9e-07 Score=91.07 Aligned_cols=57 Identities=28% Similarity=0.325 Sum_probs=48.7
Q ss_pred CCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcch
Q 011036 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321 (495)
Q Consensus 261 pGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da 321 (495)
++.+|||++||.|.-+..+|.. ..+|+|+|.|+.++..++++++..++ ++++...|.
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~~l-~v~~~~~D~ 176 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKENL-NIRTGLYDI 176 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEech
Confidence 3459999999999999998873 36999999999999999999999888 577666664
No 121
>PRK06922 hypothetical protein; Provisional
Probab=98.59 E-value=8.4e-07 Score=98.71 Aligned_cols=68 Identities=25% Similarity=0.281 Sum_probs=54.0
Q ss_pred HhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 254 AHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 254 ~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
...++..+|.+|||++||+|..+..+|... +.++|+|+|.|+.++..++++++..+. ++.++.+|+..
T Consensus 411 ~~i~d~~~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g~-~ie~I~gDa~d 478 (677)
T PRK06922 411 RIILDYIKGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEGR-SWNVIKGDAIN 478 (677)
T ss_pred HHHhhhcCCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCC-CeEEEEcchHh
Confidence 445666689999999999999888888865 458999999999999999888766553 46667777643
No 122
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.58 E-value=5.8e-07 Score=89.36 Aligned_cols=51 Identities=27% Similarity=0.286 Sum_probs=42.2
Q ss_pred CCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCC
Q 011036 259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL 311 (495)
Q Consensus 259 pqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl 311 (495)
+.+|.+|||++||+|..+..++. . +.++|+|+|+|+.++..++++++.+++
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~-~-g~~~v~giDis~~~l~~A~~n~~~~~~ 167 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAK-L-GAKKVLAVDIDPQAVEAARENAELNGV 167 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHH-c-CCCeEEEEECCHHHHHHHHHHHHHcCC
Confidence 46799999999999977766554 3 335799999999999999999988775
No 123
>PRK13795 hypothetical protein; Provisional
Probab=98.58 E-value=1.7e-07 Score=104.96 Aligned_cols=159 Identities=22% Similarity=0.299 Sum_probs=108.6
Q ss_pred CCCeEEEccchHHHHHcccccccCceeeccCCccCCCeEEEEEcccCCcCCCCCccccccccccccCCCCCCcccCCCce
Q 011036 122 PPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLY 201 (495)
Q Consensus 122 ~~k~ViVd~~~~eAVLrGA~v~aPGIl~~~~~i~~Gd~VaV~~~l~~~~~~~~w~~~~~rg~~l~~~~~~~~~~~r~~l~ 201 (495)
..+.|+||+.++++|++||+|++|||++++..+++||.|.|+ ..++..
T Consensus 125 ~~~~VvVd~ga~~~v~~Ga~l~~~GI~~~~~~i~~gd~V~I~--------------------------------~e~g~~ 172 (636)
T PRK13795 125 LKKWVIVDKGALEPIKNGKNVLAPGVVEADLDIKKGDEVVVV--------------------------------TEDGEV 172 (636)
T ss_pred CCcEEEEcccHHHHHHcCCcccCCceEEEeCCCCCCCEEEEE--------------------------------eCCCCE
Confidence 578999999999999999999999999999999999999999 234678
Q ss_pred EeecccccccccccccccceeeecCCcccccCCcccc--------ccccEEEccccHHH---HHhhcCCCCCCeEEEecC
Q 011036 202 IGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDV--------LEGEIFLQNLPSIV---TAHALDPQKGERILDMCA 270 (495)
Q Consensus 202 Vg~GialmSr~elf~~p~GIaVe~~~~v~~lp~~~~~--------~~G~i~lQ~l~S~v---~~~~LdpqpGerVLDmCA 270 (495)
+|+|+++|+..++....+|.+|+.....+..|.+.+. ..-.-.++++-... .-.++.-. ++.|. .|
T Consensus 173 vavG~a~~s~~e~~~~~kG~~Vkvr~~~~~~~~l~~~~~~~~~~~~~n~~~l~~~~~~ai~~Ir~~~~~~-~~~v~--Va 249 (636)
T PRK13795 173 VGVGRAKMDGDDMIKRFRGRAVKVRKSGRGSPRLPPGRATLEDAIEANRKHLEEKEKEAVNFIRGVAEKY-NLPVS--VS 249 (636)
T ss_pred EEEEEeccCHHHHhhccCCeEEEEEEcccCCcccCCCcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHc-CCCEE--EE
Confidence 9999999999999999999999987766666665431 11111122211111 11112111 33443 35
Q ss_pred CCChHHH-HHHHhcC---CCcEEEEEeCC---hHHHHHHHHHHHHhCCCceE
Q 011036 271 APGGKTT-AIASLLR---DEGEVVAVDRS---HNKVMDIQKLAAEMGLKCIT 315 (495)
Q Consensus 271 aPGgKT~-~iA~lm~---~~G~ViA~D~s---~~kv~~i~~~a~~~gl~~i~ 315 (495)
-+|||-+ .++.|+. ..-.++.+|-. +.-++.+++.++++|++.+.
T Consensus 250 ~SGGKDS~vll~L~~~a~~~~~vvfiDTg~efpet~e~v~~~~~~~gi~i~~ 301 (636)
T PRK13795 250 FSGGKDSLVVLDLAREALKDFKAFFNNTGLEFPETVENVKEVAEEYGIELIE 301 (636)
T ss_pred ecCcHHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHHcCCcEEE
Confidence 5688843 3333332 22366777744 44567788888999986443
No 124
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.58 E-value=3.7e-07 Score=87.12 Aligned_cols=68 Identities=24% Similarity=0.258 Sum_probs=52.3
Q ss_pred HHHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcch
Q 011036 252 VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321 (495)
Q Consensus 252 v~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da 321 (495)
.....+...++.+|||++||+|..+.+++....+.+.++++|.++..+..++++.. ....+.++..|+
T Consensus 30 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~ 97 (223)
T TIGR01934 30 RAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADA 97 (223)
T ss_pred HHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecch
Confidence 34455556689999999999999999999876544799999999999888877665 233466666655
No 125
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.57 E-value=5.9e-07 Score=86.81 Aligned_cols=58 Identities=17% Similarity=0.181 Sum_probs=49.2
Q ss_pred CeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCC-ceEEEEcch
Q 011036 263 ERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDA 321 (495)
Q Consensus 263 erVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~-~i~~~~~Da 321 (495)
++|||++||.|+.+..++.... ..+|+++|.|+..+..++++++..|+. .++++..|.
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~-~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~ 59 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHP-HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDS 59 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEeccc
Confidence 4799999999999999988763 478999999999999999999988875 467776664
No 126
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.57 E-value=4.8e-07 Score=87.80 Aligned_cols=53 Identities=30% Similarity=0.367 Sum_probs=46.1
Q ss_pred CCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 260 qpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
.+|.+|+|+||||||++..++..++.++.|+|+|+.+-+. ...+.++++|.+.
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~-----------~~~V~~iq~d~~~ 96 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP-----------IPGVIFLQGDITD 96 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc-----------CCCceEEeeeccC
Confidence 5699999999999999999999999999999999998553 3458888998755
No 127
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=1.1e-06 Score=88.14 Aligned_cols=80 Identities=15% Similarity=0.240 Sum_probs=67.8
Q ss_pred cccEEEccccHHHHHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCC-ceEEEE
Q 011036 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYK 318 (495)
Q Consensus 240 ~G~i~lQ~l~S~v~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~-~i~~~~ 318 (495)
+.-+|--|.+ +..+.|+..||.+||..+.|+|+.+.+||.-.+++|+++.+|..+.|...+++-.++.|+. +++++.
T Consensus 86 TQI~Yt~Dia--~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~h 163 (314)
T KOG2915|consen 86 TQILYTPDIA--MILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTH 163 (314)
T ss_pred ceEEecccHH--HHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEE
Confidence 4445555533 4567899999999999999999999999999999999999999999999999999999975 566666
Q ss_pred cch
Q 011036 319 LDA 321 (495)
Q Consensus 319 ~Da 321 (495)
-|.
T Consensus 164 rDV 166 (314)
T KOG2915|consen 164 RDV 166 (314)
T ss_pred eec
Confidence 553
No 128
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.54 E-value=8.2e-07 Score=91.80 Aligned_cols=66 Identities=20% Similarity=0.221 Sum_probs=46.4
Q ss_pred HhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCC-CceEEEEcch
Q 011036 254 AHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDA 321 (495)
Q Consensus 254 ~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl-~~i~~~~~Da 321 (495)
...+++.+|.+|||++||+|..+..++.. +...|+++|.|...+...+...+..+. .+|.+..+|+
T Consensus 115 ~~~l~~l~g~~VLDIGCG~G~~~~~la~~--g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~ 181 (322)
T PRK15068 115 LPHLSPLKGRTVLDVGCGNGYHMWRMLGA--GAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGI 181 (322)
T ss_pred HHhhCCCCCCEEEEeccCCcHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCH
Confidence 33556677999999999999999988874 335799999999877544433333332 3466666654
No 129
>PLN03075 nicotianamine synthase; Provisional
Probab=98.54 E-value=1e-06 Score=90.12 Aligned_cols=63 Identities=10% Similarity=-0.005 Sum_probs=53.1
Q ss_pred CCCeEEEecCCCChHHHHHHH-hcCCCcEEEEEeCChHHHHHHHHHHHH-hCCCc-eEEEEcchhH
Q 011036 261 KGERILDMCAAPGGKTTAIAS-LLRDEGEVVAVDRSHNKVMDIQKLAAE-MGLKC-ITTYKLDALK 323 (495)
Q Consensus 261 pGerVLDmCAaPGgKT~~iA~-lm~~~G~ViA~D~s~~kv~~i~~~a~~-~gl~~-i~~~~~Da~~ 323 (495)
+.++|+|++||||+.|+.+.. .+.+.++++++|+++..+..++++++. .|+.. |++..+|+..
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~ 188 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMD 188 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhh
Confidence 678999999999998776543 455678999999999999999999965 78865 9999988754
No 130
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.51 E-value=6.2e-07 Score=93.44 Aligned_cols=58 Identities=19% Similarity=0.250 Sum_probs=46.0
Q ss_pred CCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcch
Q 011036 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321 (495)
Q Consensus 260 qpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da 321 (495)
.++.+|||++||+|..+..++.... .++|+++|.|+.++..++++++ ..+++++..|+
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~-~~~VtgVD~S~~mL~~A~~k~~---~~~i~~i~gD~ 169 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP---LKECKIIEGDA 169 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhhh---ccCCeEEeccH
Confidence 5788999999999999988887664 3789999999999988877654 23456666665
No 131
>PLN02672 methionine S-methyltransferase
Probab=98.49 E-value=6.1e-07 Score=104.97 Aligned_cols=49 Identities=16% Similarity=0.045 Sum_probs=44.0
Q ss_pred CCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCC
Q 011036 262 GERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL 311 (495)
Q Consensus 262 GerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl 311 (495)
|.+|||+|||+|..+..+|.... .++|+|+|+|+..+..+++|++.+++
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~-~~~v~avDis~~Al~~A~~Na~~n~l 167 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWL-PSKVYGLDINPRAVKVAWINLYLNAL 167 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCc
Confidence 56999999999999999998754 46999999999999999999998764
No 132
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.48 E-value=2.2e-06 Score=85.72 Aligned_cols=65 Identities=17% Similarity=0.178 Sum_probs=59.3
Q ss_pred CCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCC-CceEEEEcchhHHHH
Q 011036 262 GERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALKAVR 326 (495)
Q Consensus 262 GerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl-~~i~~~~~Da~~~~~ 326 (495)
-.+||+++.+.|--|..||..+...|+|+++|+++.+...++++.++.|+ ++|+.+.+|+.+.+.
T Consensus 80 ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~ 145 (247)
T PLN02589 80 AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLD 145 (247)
T ss_pred CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHH
Confidence 45899999999999999999888889999999999999999999999997 469999999988653
No 133
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.47 E-value=2.2e-06 Score=88.55 Aligned_cols=47 Identities=21% Similarity=0.291 Sum_probs=37.4
Q ss_pred hcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHH
Q 011036 256 ALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQK 304 (495)
Q Consensus 256 ~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~ 304 (495)
.+++.+|.+|||++||+|..+..++.. +...|+++|.|..++...+.
T Consensus 116 ~l~~~~g~~VLDvGCG~G~~~~~~~~~--g~~~v~GiDpS~~ml~q~~~ 162 (314)
T TIGR00452 116 HLSPLKGRTILDVGCGSGYHMWRMLGH--GAKSLVGIDPTVLFLCQFEA 162 (314)
T ss_pred hcCCCCCCEEEEeccCCcHHHHHHHHc--CCCEEEEEcCCHHHHHHHHH
Confidence 346788999999999999988777753 34589999999988765433
No 134
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.46 E-value=1.6e-06 Score=80.89 Aligned_cols=65 Identities=20% Similarity=0.261 Sum_probs=54.9
Q ss_pred HhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 254 AHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 254 ~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
+..+++++|++|||++||+|..|.+++.. .++|+|+|.++..+..++++++. ..+++++..|+.+
T Consensus 6 ~~~~~~~~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~ 70 (169)
T smart00650 6 VRAANLRPGDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALK 70 (169)
T ss_pred HHhcCCCCcCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhc
Confidence 45677889999999999999999999885 36899999999999999888754 4568888888755
No 135
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.46 E-value=1.7e-06 Score=86.90 Aligned_cols=60 Identities=22% Similarity=0.204 Sum_probs=52.1
Q ss_pred CCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCc-eEEEEcch
Q 011036 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDA 321 (495)
Q Consensus 261 pGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~-i~~~~~Da 321 (495)
.+..|||+|||+|..+..|+.-+. ++.|+|+|+|+..+..+.+||+++++.. |.++..+.
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~m 208 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIM 208 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccc
Confidence 355899999999999999988776 8999999999999999999999999875 66665543
No 136
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.46 E-value=7.5e-07 Score=83.72 Aligned_cols=60 Identities=22% Similarity=0.274 Sum_probs=50.0
Q ss_pred CeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCC-CceEEEEcchhHHH
Q 011036 263 ERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALKAV 325 (495)
Q Consensus 263 erVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl-~~i~~~~~Da~~~~ 325 (495)
+.|||+|||-||-|.++|... ..|+|+|+++.|+..+++||+-.|. ++|.++..|.++.+
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~ 61 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELL 61 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHG
T ss_pred CEEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHH
Confidence 479999999999999999853 4799999999999999999999996 57999999998853
No 137
>PRK04457 spermidine synthase; Provisional
Probab=98.46 E-value=3.2e-06 Score=85.03 Aligned_cols=65 Identities=12% Similarity=0.098 Sum_probs=52.4
Q ss_pred CCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCC-CceEEEEcchhHHH
Q 011036 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALKAV 325 (495)
Q Consensus 260 qpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl-~~i~~~~~Da~~~~ 325 (495)
.++.+|||+++|.|..+..++... +..+|+++|+++..+..+++++...+. ..++++..|+.+.+
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l 130 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYI 130 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHH
Confidence 346799999999999999898876 458999999999999888877654443 56888888887653
No 138
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.46 E-value=2.8e-06 Score=81.38 Aligned_cols=67 Identities=24% Similarity=0.160 Sum_probs=53.5
Q ss_pred HhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 254 AHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 254 ~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
++..+.-.|..|+|+|||+|-.+...+.| +.-+|+|+|++...++.+++|+.+ +...+.++..|..+
T Consensus 38 a~~~g~l~g~~V~DlG~GTG~La~ga~~l--Ga~~V~~vdiD~~a~ei~r~N~~~-l~g~v~f~~~dv~~ 104 (198)
T COG2263 38 AYLRGDLEGKTVLDLGAGTGILAIGAALL--GASRVLAVDIDPEALEIARANAEE-LLGDVEFVVADVSD 104 (198)
T ss_pred HHHcCCcCCCEEEEcCCCcCHHHHHHHhc--CCcEEEEEecCHHHHHHHHHHHHh-hCCceEEEEcchhh
Confidence 34445567889999999999888665543 457999999999999999999999 45568888887643
No 139
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.46 E-value=2.7e-06 Score=82.00 Aligned_cols=62 Identities=23% Similarity=0.194 Sum_probs=49.6
Q ss_pred CCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 259 pqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
+..+.+|||++||+|..+..++.. ..+++++|.++..+..+++++...+...+.+...|+.+
T Consensus 43 ~~~~~~vLdlG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~ 104 (224)
T TIGR01983 43 PLFGLRVLDVGCGGGLLSEPLARL---GANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVED 104 (224)
T ss_pred CCCCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHH
Confidence 345889999999999988887763 24699999999999999998888776556666666543
No 140
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.45 E-value=3.1e-06 Score=82.38 Aligned_cols=66 Identities=24% Similarity=0.259 Sum_probs=51.3
Q ss_pred HHHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcch
Q 011036 252 VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321 (495)
Q Consensus 252 v~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da 321 (495)
+..+.+.+.++.+|||+|||+|..+..++.. ...|+++|.++..+..+++++...+. .+.+...|+
T Consensus 39 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~~ 104 (233)
T PRK05134 39 YIREHAGGLFGKRVLDVGCGGGILSESMARL---GADVTGIDASEENIEVARLHALESGL-KIDYRQTTA 104 (233)
T ss_pred HHHHhccCCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHHHcCC-ceEEEecCH
Confidence 3344455678999999999999999888774 25799999999999999888887765 455555554
No 141
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.44 E-value=6.6e-07 Score=88.06 Aligned_cols=65 Identities=26% Similarity=0.363 Sum_probs=44.8
Q ss_pred HhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCC------ceEEEEcchhHH
Q 011036 254 AHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK------CITTYKLDALKA 324 (495)
Q Consensus 254 ~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~------~i~~~~~Da~~~ 324 (495)
+....|+.|++|||.|.|-|-.+. ..+-++.-+|+.++.+++-+ ++|+.+..+ .|+.+.+|+...
T Consensus 127 v~~V~~~~G~rVLDtC~GLGYtAi--~a~~rGA~~VitvEkdp~VL----eLa~lNPwSr~l~~~~i~iilGD~~e~ 197 (287)
T COG2521 127 VELVKVKRGERVLDTCTGLGYTAI--EALERGAIHVITVEKDPNVL----ELAKLNPWSRELFEIAIKIILGDAYEV 197 (287)
T ss_pred hheeccccCCEeeeeccCccHHHH--HHHHcCCcEEEEEeeCCCeE----EeeccCCCCccccccccEEecccHHHH
Confidence 345568889999999999997554 44446666999999998765 344433222 356677776654
No 142
>PRK13534 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=98.44 E-value=2.2e-07 Score=103.92 Aligned_cols=72 Identities=19% Similarity=0.354 Sum_probs=66.7
Q ss_pred CCeEEEccchHHHHHcccccccCceeeccCCccCCCeEEEEEcccCCcCCCCCccccccccccccCCCCCCcccCCCceE
Q 011036 123 PKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYI 202 (495)
Q Consensus 123 ~k~ViVd~~~~eAVLrGA~v~aPGIl~~~~~i~~Gd~VaV~~~l~~~~~~~~w~~~~~rg~~l~~~~~~~~~~~r~~l~V 202 (495)
.+.|+||+.|++.|++||+||+|||++++++|+.||+|.|. ..++.++
T Consensus 563 ~~~V~Vd~~a~~~v~~G~~v~apgVv~~d~~ir~gDeV~Vv--------------------------------~e~~~~l 610 (639)
T PRK13534 563 KYRVVVDKESEPFARKGKSVFAKFVIDCDEEIRPYDEVLVV--------------------------------NEDDELL 610 (639)
T ss_pred CcEEEECCcchhhhhCCCcccCCcceecCCCCCCCCEEEEE--------------------------------ecCCcEE
Confidence 48999999999999999999999999999999999999999 3357899
Q ss_pred eecccccccccccccccceeeecC
Q 011036 203 GQGTAMMSRAGIFRASEGIAVDMH 226 (495)
Q Consensus 203 g~GialmSr~elf~~p~GIaVe~~ 226 (495)
|+|+++|+..+|....+|.+|+.-
T Consensus 611 avG~A~~~~~em~~~~~G~avkvR 634 (639)
T PRK13534 611 AYGKALLNGRELMEFNYGLAVKVR 634 (639)
T ss_pred EEEEEecCHHHHhhcCCceEEEEe
Confidence 999999999999998999998864
No 143
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.43 E-value=7.5e-07 Score=91.18 Aligned_cols=71 Identities=18% Similarity=0.193 Sum_probs=61.9
Q ss_pred HHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhHHH
Q 011036 253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAV 325 (495)
Q Consensus 253 ~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~~~ 325 (495)
+..+|.++||..+||+++|.||.|.+|+...++.|.|+|+|+++..+..+++++++ ..++++++.|.....
T Consensus 11 vl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l~ 81 (296)
T PRK00050 11 VVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNLK 81 (296)
T ss_pred HHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHHH
Confidence 45677889999999999999999999999887789999999999999999887766 467999998887653
No 144
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.42 E-value=1.7e-06 Score=83.15 Aligned_cols=57 Identities=19% Similarity=0.171 Sum_probs=43.1
Q ss_pred CCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcch
Q 011036 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321 (495)
Q Consensus 260 qpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da 321 (495)
..+.+|||++||+|..+.+++... ....++++|.+...+..+++.+. .++.++..|.
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~ 89 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLS----ENVQFICGDA 89 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcC----CCCeEEecch
Confidence 345799999999999999999875 35679999999988876655433 2455555554
No 145
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.41 E-value=3.7e-06 Score=85.72 Aligned_cols=70 Identities=14% Similarity=0.172 Sum_probs=57.6
Q ss_pred HHHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCC-ceEEEEcchhH
Q 011036 252 VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALK 323 (495)
Q Consensus 252 v~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~-~i~~~~~Da~~ 323 (495)
.....++.+++.+|||++||+|..+..++... +..+++++|. +..+..+++++++.|+. .|+++..|+++
T Consensus 140 ~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~ 210 (306)
T TIGR02716 140 LLLEEAKLDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYK 210 (306)
T ss_pred HHHHHcCCCCCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccC
Confidence 34456678889999999999999999998875 4589999998 67888889999999985 48888877643
No 146
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.41 E-value=3.2e-06 Score=91.25 Aligned_cols=68 Identities=21% Similarity=0.248 Sum_probs=51.1
Q ss_pred cHHHHHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcch
Q 011036 249 PSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321 (495)
Q Consensus 249 ~S~v~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da 321 (495)
........+++.++.+|||++||+|..|..++... ++|+|+|.|+..+...++... ...++.++..|+
T Consensus 25 ~~~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~~~~--~~~~i~~~~~d~ 92 (475)
T PLN02336 25 ERPEILSLLPPYEGKSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNESING--HYKNVKFMCADV 92 (475)
T ss_pred hhhHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHhc--cCCceEEEEecc
Confidence 34455566777788999999999999999999853 589999999999875443211 235677777775
No 147
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.40 E-value=8.5e-07 Score=84.45 Aligned_cols=60 Identities=25% Similarity=0.277 Sum_probs=51.4
Q ss_pred CeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCc-eEEEEcchhH
Q 011036 263 ERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDALK 323 (495)
Q Consensus 263 erVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~-i~~~~~Da~~ 323 (495)
.+|||++||-|.....|+.- +=++.++++|-|+..|..++..|++.|+++ |++-++|.++
T Consensus 69 ~~VlDLGtGNG~~L~~L~~e-gf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~ 129 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKE-GFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITD 129 (227)
T ss_pred cceeeccCCchHHHHHHHHh-cCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccC
Confidence 39999999999888877763 335679999999999999999999999988 8888888644
No 148
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.39 E-value=3.7e-06 Score=82.60 Aligned_cols=65 Identities=25% Similarity=0.273 Sum_probs=58.7
Q ss_pred CCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCC-ceEEEEcchhHHH
Q 011036 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALKAV 325 (495)
Q Consensus 261 pGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~-~i~~~~~Da~~~~ 325 (495)
...+.||++..+|--+...|..+...|+|+|+|+++.-.+......+..|.. -|++..+++.+++
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esL 138 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESL 138 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhH
Confidence 4679999999999999999999999999999999999999999999999975 4899999888865
No 149
>PRK13794 hypothetical protein; Provisional
Probab=98.38 E-value=1.1e-06 Score=95.53 Aligned_cols=163 Identities=21% Similarity=0.282 Sum_probs=106.2
Q ss_pred CCCeEEEccchHHHHH-cccccccCceeeccCCccCCCeEEEEEcccCCcCCCCCccccccccccccCCCCCCcccCCCc
Q 011036 122 PPKEVIVSRKCAEAVL-RGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGL 200 (495)
Q Consensus 122 ~~k~ViVd~~~~eAVL-rGA~v~aPGIl~~~~~i~~Gd~VaV~~~l~~~~~~~~w~~~~~rg~~l~~~~~~~~~~~r~~l 200 (495)
..+.|+||+.|+++|+ +||+||+|||++++++++.||.|.|+ ...+.
T Consensus 123 ~~~~V~Vd~ga~~~v~~~G~~v~~~GV~~~~~~i~~gd~V~Iv--------------------------------~~~g~ 170 (479)
T PRK13794 123 KKKFIVVKDDVPKFIRNKGASVLRPGVAEASEDIEEGDDVIIL--------------------------------DENGD 170 (479)
T ss_pred CCcEEEECccHHHHHHhCCCeecCCceEEecCCcCCCCEEEEE--------------------------------cCCCc
Confidence 3578999999999999 99999999999999999999999999 33467
Q ss_pred eEeecccccccccccccccceeeecCCcc----ccc----CCccc-----cccccEEEccccHH---HHHhhcCCCCCCe
Q 011036 201 YIGQGTAMMSRAGIFRASEGIAVDMHNRI----FQL----PSFYD-----VLEGEIFLQNLPSI---VTAHALDPQKGER 264 (495)
Q Consensus 201 ~Vg~GialmSr~elf~~p~GIaVe~~~~v----~~l----p~~~~-----~~~G~i~lQ~l~S~---v~~~~LdpqpGer 264 (495)
.+|.|++.||.+++....+|.+|+..... +.. +++.. +....-.++.+-.. +.-.++. .-+.+
T Consensus 171 ~iavG~a~~s~~ei~~~~~G~~Vkvr~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~i~~~~~-~~~~~ 249 (479)
T PRK13794 171 VVGVGRARMSYEEIVNMEKGMVVKVRKSEEPKNSNILSEYGPGEETWKDMVEANKNVLDKYERNSIGFIRNTAE-KINKP 249 (479)
T ss_pred EEEEEEeecCHHHHHhccCceEEEEEeccCCcccccccccCCcCccHHHHHHhhHHHHHHHHHHHHHHHHHHHH-hcCCC
Confidence 99999999999999999999998875411 211 11110 01111112222111 1112221 12345
Q ss_pred EEEecCCCChHHHHH-HHhc----CCCcEEEEEeCC---hHHHHHHHHHHHHhCCCceEEEEcc
Q 011036 265 ILDMCAAPGGKTTAI-ASLL----RDEGEVVAVDRS---HNKVMDIQKLAAEMGLKCITTYKLD 320 (495)
Q Consensus 265 VLDmCAaPGgKT~~i-A~lm----~~~G~ViA~D~s---~~kv~~i~~~a~~~gl~~i~~~~~D 320 (495)
|+ .|-+|||-+.. +.|+ +..-.++-+|-. +.-++.+++.++++|++. ..+..+
T Consensus 250 v~--vs~SGGKDS~v~L~L~~~~~~~~~~vvfiDTG~efpet~e~i~~~~~~~gl~i-~~~~~~ 310 (479)
T PRK13794 250 VT--VAYSGGKDSLATLLLALKALGINFPVLFNDTGLEFPETLENVEDVEKHYGLEI-IRTKSE 310 (479)
T ss_pred EE--EEecchHHHHHHHHHHHHHhCCCeEEEEEECCCCChHHHHHHHHHHHhcCCcE-EEEchH
Confidence 54 56679996543 2222 344577778753 445666788888898874 344444
No 150
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.36 E-value=2.5e-06 Score=87.22 Aligned_cols=93 Identities=17% Similarity=0.219 Sum_probs=64.0
Q ss_pred cccccCCccccccccEEEccccHHHHHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHH
Q 011036 228 RIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAA 307 (495)
Q Consensus 228 ~v~~lp~~~~~~~G~i~lQ~l~S~v~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~ 307 (495)
.++.+|.+....+-.-+++.....++..+ .++.+|||++||+|.||..|+..+.....++++|+|+.++..+++.++
T Consensus 33 ~i~~~peYy~tr~E~~il~~~~~~ia~~~---~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~ 109 (301)
T TIGR03438 33 QICELPEYYPTRTEAAILERHADEIAAAT---GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALA 109 (301)
T ss_pred HHHCCCccccHHHHHHHHHHHHHHHHHhh---CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHH
Confidence 35667777654333334444444444433 357899999999999999999876434689999999999998877765
Q ss_pred HhC-CCceEEEEcchhH
Q 011036 308 EMG-LKCITTYKLDALK 323 (495)
Q Consensus 308 ~~g-l~~i~~~~~Da~~ 323 (495)
... -..|..+.+|...
T Consensus 110 ~~~p~~~v~~i~gD~~~ 126 (301)
T TIGR03438 110 ADYPQLEVHGICADFTQ 126 (301)
T ss_pred hhCCCceEEEEEEcccc
Confidence 432 1236667777654
No 151
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.36 E-value=7.5e-06 Score=82.43 Aligned_cols=65 Identities=14% Similarity=0.137 Sum_probs=47.4
Q ss_pred CCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhC----CCceEEEEcchhHH
Q 011036 258 DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG----LKCITTYKLDALKA 324 (495)
Q Consensus 258 dpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~g----l~~i~~~~~Da~~~ 324 (495)
.+.| .+||++++|.|+.+..++... ...+|+++|++...+..+++.+...+ -..++++..|+.+.
T Consensus 70 ~~~p-~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~ 138 (270)
T TIGR00417 70 HPNP-KHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKF 138 (270)
T ss_pred CCCC-CEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHH
Confidence 3444 499999999999887776643 34689999999999988888776543 13466666666554
No 152
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.35 E-value=6.2e-06 Score=79.83 Aligned_cols=60 Identities=27% Similarity=0.219 Sum_probs=50.1
Q ss_pred CCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCC-CceEEEEcch
Q 011036 259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDA 321 (495)
Q Consensus 259 pqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl-~~i~~~~~Da 321 (495)
+.++.+|||+|||.|..+..++.. ..+|+|+|.|+.++..+++++...+. .++.+...|+
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~ 113 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDL 113 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCh
Confidence 567899999999999999998873 35899999999999999999887766 3566666664
No 153
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.34 E-value=3.8e-06 Score=85.91 Aligned_cols=63 Identities=27% Similarity=0.309 Sum_probs=51.8
Q ss_pred cHHHHHhhcC--CCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCc
Q 011036 249 PSIVTAHALD--PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC 313 (495)
Q Consensus 249 ~S~v~~~~Ld--pqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~ 313 (495)
...++..+|+ .++|++|||++||+|-.+.+.+.| +..+|+|+|+++-.|...++|++.+|++.
T Consensus 148 TT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kL--GA~~v~g~DiDp~AV~aa~eNa~~N~v~~ 212 (300)
T COG2264 148 TTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKL--GAKKVVGVDIDPQAVEAARENARLNGVEL 212 (300)
T ss_pred hHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHc--CCceEEEecCCHHHHHHHHHHHHHcCCch
Confidence 3455666665 469999999999999877665554 56899999999999999999999998864
No 154
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.30 E-value=2.9e-06 Score=85.27 Aligned_cols=57 Identities=21% Similarity=0.191 Sum_probs=42.9
Q ss_pred CCCCeEEEecCCCChHHHHHHHhcCCC--cEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcch
Q 011036 260 QKGERILDMCAAPGGKTTAIASLLRDE--GEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321 (495)
Q Consensus 260 qpGerVLDmCAaPGgKT~~iA~lm~~~--G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da 321 (495)
+++.+|||++||+|..+..++...... ..|+++|+|+..+..+.+. ..++.+...|+
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~-----~~~~~~~~~d~ 142 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR-----YPQVTFCVASS 142 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh-----CCCCeEEEeec
Confidence 456889999999999999999876543 3799999999988765443 23455555554
No 155
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.30 E-value=3.2e-06 Score=81.52 Aligned_cols=70 Identities=33% Similarity=0.286 Sum_probs=52.1
Q ss_pred cccHHHHHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcch
Q 011036 247 NLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321 (495)
Q Consensus 247 ~l~S~v~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da 321 (495)
...|.+. .+++.-++.++||++||.|.-+..+|.+ .-.|+|+|.|...+..+++.|++.+++ |++...|.
T Consensus 17 ~~hs~v~-~a~~~~~~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~~~l~-i~~~~~Dl 86 (192)
T PF03848_consen 17 PTHSEVL-EAVPLLKPGKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQRLAEEEGLD-IRTRVADL 86 (192)
T ss_dssp ---HHHH-HHCTTS-SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHHTT-T-EEEEE-BG
T ss_pred CCcHHHH-HHHhhcCCCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhhcCce-eEEEEecc
Confidence 3445544 3455545669999999999999999984 248999999999999999999999998 88888774
No 156
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.29 E-value=9.8e-07 Score=89.88 Aligned_cols=71 Identities=18% Similarity=0.239 Sum_probs=49.4
Q ss_pred cccEEEccccHHHHHhhcCCCCCCeEEEecCCCChHHHHHHHhc------CCCcEEEEEeCChHHHHHHHHHHHHhC
Q 011036 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLL------RDEGEVVAVDRSHNKVMDIQKLAAEMG 310 (495)
Q Consensus 240 ~G~i~lQ~l~S~v~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm------~~~G~ViA~D~s~~kv~~i~~~a~~~g 310 (495)
.|.+|--..-+.+.+.+++++++++|||.|||.|+...++...+ ...-.++|+|+++..+...+-++.-.|
T Consensus 25 ~G~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~ 101 (311)
T PF02384_consen 25 LGQFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHG 101 (311)
T ss_dssp CGGC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTT
T ss_pred cceeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhc
Confidence 45555444445577778899999999999999999988887754 245789999999998877665554444
No 157
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.28 E-value=2.4e-06 Score=82.35 Aligned_cols=61 Identities=18% Similarity=0.222 Sum_probs=53.5
Q ss_pred eEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhHHH
Q 011036 264 RILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAV 325 (495)
Q Consensus 264 rVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~~~ 325 (495)
.+||+|||-|..+.++|.... .-.++|+|++.+.+..+.+.+.+.+++|+.++..||...+
T Consensus 20 l~lEIG~G~G~~l~~~A~~~P-d~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l 80 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNP-DINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELL 80 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHST-TSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHH
T ss_pred eEEEecCCCCHHHHHHHHHCC-CCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHH
Confidence 899999999999999999764 5789999999999999999999999999999999997754
No 158
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.26 E-value=2.6e-07 Score=77.94 Aligned_cols=52 Identities=21% Similarity=0.250 Sum_probs=38.3
Q ss_pred EEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEE
Q 011036 266 LDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYK 318 (495)
Q Consensus 266 LDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~ 318 (495)
||++||+|..+..|+... +..+++++|.|+.++..+++.....+........
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~ 52 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLR 52 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEE
Confidence 799999999999998876 5689999999999998777777776654443333
No 159
>PRK00811 spermidine synthase; Provisional
Probab=98.24 E-value=1.1e-05 Score=81.86 Aligned_cols=64 Identities=17% Similarity=0.167 Sum_probs=50.5
Q ss_pred CCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhC-----CCceEEEEcchhHHH
Q 011036 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG-----LKCITTYKLDALKAV 325 (495)
Q Consensus 261 pGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~g-----l~~i~~~~~Da~~~~ 325 (495)
...+|||+++|.|+.+..++.. .+..+|+++|+++..+..+++.+..++ -..++++..|+.+.+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~-~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l 144 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKH-PSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFV 144 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcC-CCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHH
Confidence 3569999999999998888764 234689999999999999998887653 235788888887643
No 160
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.21 E-value=6.9e-06 Score=82.62 Aligned_cols=46 Identities=15% Similarity=0.181 Sum_probs=33.8
Q ss_pred CCCCeEEEecCCCChHH----HHHHHhcCC----CcEEEEEeCChHHHHHHHHH
Q 011036 260 QKGERILDMCAAPGGKT----TAIASLLRD----EGEVVAVDRSHNKVMDIQKL 305 (495)
Q Consensus 260 qpGerVLDmCAaPGgKT----~~iA~lm~~----~G~ViA~D~s~~kv~~i~~~ 305 (495)
.++.+|||++||+|--+ ..+++.+.. ..+|+|+|+|+.++..+++.
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~ 151 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAG 151 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcC
Confidence 45679999999999743 334443332 46999999999999877653
No 161
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.21 E-value=5.7e-06 Score=84.75 Aligned_cols=64 Identities=25% Similarity=0.262 Sum_probs=49.1
Q ss_pred ccHHHHHhhcC--CCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCc
Q 011036 248 LPSIVTAHALD--PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC 313 (495)
Q Consensus 248 l~S~v~~~~Ld--pqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~ 313 (495)
....++..+|. .++|.+|||++||+|--+...+.| +.++|+|+|+++..+...++|++.+|+..
T Consensus 146 ~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~kl--GA~~v~a~DiDp~Av~~a~~N~~~N~~~~ 211 (295)
T PF06325_consen 146 PTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKL--GAKKVVAIDIDPLAVEAARENAELNGVED 211 (295)
T ss_dssp HHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHT--TBSEEEEEESSCHHHHHHHHHHHHTT-TT
T ss_pred HHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHc--CCCeEEEecCCHHHHHHHHHHHHHcCCCe
Confidence 34455555554 478999999999999776554443 56799999999999999999999999864
No 162
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.20 E-value=1.2e-05 Score=78.46 Aligned_cols=59 Identities=19% Similarity=0.116 Sum_probs=42.7
Q ss_pred cccHHHHHhhc---CCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCC
Q 011036 247 NLPSIVTAHAL---DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL 311 (495)
Q Consensus 247 ~l~S~v~~~~L---dpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl 311 (495)
..|+-...+.+ .+.+|.+|||.+||.|--+..||.. .-.|+|+|.|+..+..+ +++.|+
T Consensus 17 ~~p~~~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~---~~~~~~ 78 (213)
T TIGR03840 17 SEVNPLLVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQF---FAENGL 78 (213)
T ss_pred CCCCHHHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHH---HHHcCC
Confidence 34444444443 2357889999999999999999873 23899999999998854 344554
No 163
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.18 E-value=7.8e-06 Score=78.96 Aligned_cols=65 Identities=22% Similarity=0.188 Sum_probs=48.3
Q ss_pred HHHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcch
Q 011036 252 VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321 (495)
Q Consensus 252 v~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da 321 (495)
+....|.-.+-.++||.+||-|-.|.+||... .+++|+|.|+..+...++.++. .++|.+...|.
T Consensus 34 ~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~--~~~V~~~~~dv 98 (201)
T PF05401_consen 34 TLLAALPRRRYRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAG--LPHVEWIQADV 98 (201)
T ss_dssp HHHHHHTTSSEEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT---SSEEEEES-T
T ss_pred HHHHhcCccccceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCC--CCCeEEEECcC
Confidence 33345655566789999999999999999864 6899999999999988887764 56788888764
No 164
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.17 E-value=5.1e-06 Score=74.91 Aligned_cols=49 Identities=27% Similarity=0.293 Sum_probs=38.0
Q ss_pred HHHHHhhcC-CCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHH
Q 011036 250 SIVTAHALD-PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMD 301 (495)
Q Consensus 250 S~v~~~~Ld-pqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~ 301 (495)
+-....+++ ..++.+|||++||.|..+..++.. + -+|+++|.+...+..
T Consensus 10 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~-~~~~g~D~~~~~~~~ 59 (161)
T PF13489_consen 10 ADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKR--G-FEVTGVDISPQMIEK 59 (161)
T ss_dssp HHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHT--T-SEEEEEESSHHHHHH
T ss_pred HHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHh--C-CEEEEEECCHHHHhh
Confidence 334455554 467889999999999999888764 2 299999999988765
No 165
>PRK10742 putative methyltransferase; Provisional
Probab=98.15 E-value=4e-05 Score=76.57 Aligned_cols=72 Identities=18% Similarity=0.143 Sum_probs=60.2
Q ss_pred HHHHhhcCCCCCC--eEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHh------CC---CceEEEEc
Q 011036 251 IVTAHALDPQKGE--RILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEM------GL---KCITTYKL 319 (495)
Q Consensus 251 ~v~~~~LdpqpGe--rVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~------gl---~~i~~~~~ 319 (495)
...+.++.+++|. +|||++||.|.-+..+|.+ .++|+++|+++.-...+++++++. +. .+|+.++.
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~ 152 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA 152 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeC
Confidence 4567888889999 9999999999999999986 357999999999999999999885 32 45778888
Q ss_pred chhHHH
Q 011036 320 DALKAV 325 (495)
Q Consensus 320 Da~~~~ 325 (495)
|+...+
T Consensus 153 da~~~L 158 (250)
T PRK10742 153 SSLTAL 158 (250)
T ss_pred cHHHHH
Confidence 877654
No 166
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.14 E-value=1.6e-05 Score=78.07 Aligned_cols=65 Identities=25% Similarity=0.328 Sum_probs=55.7
Q ss_pred cCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 257 LDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 257 LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
+..+||.+||-++||+|.--+|++...+.+|.|+|++.|+....++..+|++. +||..+-.||.+
T Consensus 69 ~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R--~NIiPIl~DAr~ 133 (229)
T PF01269_consen 69 IPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR--PNIIPILEDARH 133 (229)
T ss_dssp -S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS--TTEEEEES-TTS
T ss_pred cCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC--CceeeeeccCCC
Confidence 34689999999999999999999999998999999999999999999999876 789999999865
No 167
>PRK01581 speE spermidine synthase; Validated
Probab=98.14 E-value=2e-05 Score=82.79 Aligned_cols=67 Identities=12% Similarity=0.009 Sum_probs=44.3
Q ss_pred cCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHH--H---H--hCCCceEEEEcchhHHH
Q 011036 257 LDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLA--A---E--MGLKCITTYKLDALKAV 325 (495)
Q Consensus 257 LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a--~---~--~gl~~i~~~~~Da~~~~ 325 (495)
..+.| .+||++++|.|+-+..+.. ..+..+|+++|+++..+..+++.- . + +.-..++++..|+.+.+
T Consensus 147 ~h~~P-krVLIIGgGdG~tlrelLk-~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL 220 (374)
T PRK01581 147 KVIDP-KRVLILGGGDGLALREVLK-YETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFL 220 (374)
T ss_pred hCCCC-CEEEEECCCHHHHHHHHHh-cCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHH
Confidence 34444 5999999999985544443 234479999999999887776411 1 1 12245777777776643
No 168
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.13 E-value=1.4e-05 Score=79.02 Aligned_cols=62 Identities=19% Similarity=0.201 Sum_probs=57.0
Q ss_pred CeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhHHH
Q 011036 263 ERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAV 325 (495)
Q Consensus 263 erVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~~~ 325 (495)
-.+|++|||-|..++++|.. .++--++|+|+...-+..+.+.+.+.|++||..++.||...+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~-nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l 111 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKK-NPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVL 111 (227)
T ss_pred cEEEEECCCCCHHHHHHHHH-CCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHH
Confidence 47999999999999999996 455689999999999999999999999999999999998865
No 169
>PRK03612 spermidine synthase; Provisional
Probab=98.11 E-value=1.7e-05 Score=87.15 Aligned_cols=64 Identities=16% Similarity=0.090 Sum_probs=46.5
Q ss_pred CCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHH--HHHh-----CCCceEEEEcchhHH
Q 011036 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKL--AAEM-----GLKCITTYKLDALKA 324 (495)
Q Consensus 260 qpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~--a~~~-----gl~~i~~~~~Da~~~ 324 (495)
.+.++|||+++|.|+-+..++.. .+..+|+++|+++..++.++++ ..+. .-+.++++..|+.+.
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~ 366 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNW 366 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHH
Confidence 34579999999999988887762 3336999999999999888773 2221 113577777777664
No 170
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.07 E-value=1.8e-05 Score=79.23 Aligned_cols=43 Identities=26% Similarity=0.309 Sum_probs=37.7
Q ss_pred CCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHH
Q 011036 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKL 305 (495)
Q Consensus 260 qpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~ 305 (495)
--|.+|||.+||.|=.+.+||.+ ...|+|+|.+...|+.+++-
T Consensus 88 ~~g~~ilDvGCGgGLLSepLArl---ga~V~GID~s~~~V~vA~~h 130 (282)
T KOG1270|consen 88 LLGMKILDVGCGGGLLSEPLARL---GAQVTGIDASDDMVEVANEH 130 (282)
T ss_pred cCCceEEEeccCccccchhhHhh---CCeeEeecccHHHHHHHHHh
Confidence 34688999999999999999996 26899999999999888776
No 171
>PRK06202 hypothetical protein; Provisional
Probab=98.07 E-value=2e-05 Score=77.09 Aligned_cols=55 Identities=22% Similarity=0.227 Sum_probs=43.1
Q ss_pred HhhcCCCCCCeEEEecCCCChHHHHHHHhcCCC---cEEEEEeCChHHHHHHHHHHHH
Q 011036 254 AHALDPQKGERILDMCAAPGGKTTAIASLLRDE---GEVVAVDRSHNKVMDIQKLAAE 308 (495)
Q Consensus 254 ~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~---G~ViA~D~s~~kv~~i~~~a~~ 308 (495)
...+...++.+|||+|||+|..+..|+..+... .+|+|+|.|+.++..+++.++.
T Consensus 53 ~~~l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~ 110 (232)
T PRK06202 53 RPALSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR 110 (232)
T ss_pred HHhcCCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc
Confidence 334455678899999999999999988765433 4999999999999877666543
No 172
>PLN02366 spermidine synthase
Probab=98.06 E-value=4.3e-05 Score=78.82 Aligned_cols=64 Identities=11% Similarity=0.129 Sum_probs=50.3
Q ss_pred CCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhC--C--CceEEEEcchhHHH
Q 011036 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG--L--KCITTYKLDALKAV 325 (495)
Q Consensus 261 pGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~g--l--~~i~~~~~Da~~~~ 325 (495)
..++|||+++|.|+-...++.. .+..+|+.+|+++..+...++.....+ + ..++++..|+.+.+
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l 158 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFL 158 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHH
Confidence 3579999999999988888764 344689999999999988888776542 2 35888888887754
No 173
>PRK05785 hypothetical protein; Provisional
Probab=98.06 E-value=1.7e-05 Score=77.99 Aligned_cols=42 Identities=21% Similarity=0.254 Sum_probs=35.9
Q ss_pred CCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHH
Q 011036 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQK 304 (495)
Q Consensus 261 pGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~ 304 (495)
++.+|||+|||+|.-+.+++... .++|+++|.|++++...++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~ 92 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLV 92 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHh
Confidence 47899999999999999888764 3799999999999876543
No 174
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.01 E-value=7.1e-05 Score=72.55 Aligned_cols=46 Identities=22% Similarity=0.185 Sum_probs=39.2
Q ss_pred CCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHH
Q 011036 259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKL 305 (495)
Q Consensus 259 pqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~ 305 (495)
..++.+|||++||+|.-+..++.... .+.|+|+|+|+.+++.++++
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~-~~~v~giDiS~~~l~~A~~~ 86 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLP-FKHIYGVEINEYAVEKAKAY 86 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCC-CCeEEEEECCHHHHHHHHhh
Confidence 45678999999999999999988653 47899999999999877654
No 175
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.94 E-value=4.7e-05 Score=78.01 Aligned_cols=68 Identities=18% Similarity=0.235 Sum_probs=59.4
Q ss_pred HHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhC-CCceEEEEcchhH
Q 011036 253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG-LKCITTYKLDALK 323 (495)
Q Consensus 253 ~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~g-l~~i~~~~~Da~~ 323 (495)
.+..+++.+|++|||++||+|..|..++.. .++|+|+|+++..+..++++++..+ ..+++++..|+++
T Consensus 28 Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~---~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~ 96 (294)
T PTZ00338 28 IVEKAAIKPTDTVLEIGPGTGNLTEKLLQL---AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALK 96 (294)
T ss_pred HHHhcCCCCcCEEEEecCchHHHHHHHHHh---CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhh
Confidence 455678889999999999999999998874 3579999999999999999988777 4679999999876
No 176
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.92 E-value=3.7e-05 Score=83.05 Aligned_cols=78 Identities=24% Similarity=0.239 Sum_probs=66.0
Q ss_pred EEEccccHHHH------HhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEE
Q 011036 243 IFLQNLPSIVT------AHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITT 316 (495)
Q Consensus 243 i~lQ~l~S~v~------~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~ 316 (495)
-|.|+-.++.. ...++...+..+||+|||+|..+..+|. ..+.|+++++++..|..++++|+.+|++|.++
T Consensus 359 AFFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~---~~~~ViGvEi~~~aV~dA~~nA~~NgisNa~F 435 (534)
T KOG2187|consen 359 AFFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALAR---GVKRVIGVEISPDAVEDAEKNAQINGISNATF 435 (534)
T ss_pred hhhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhc---cccceeeeecChhhcchhhhcchhcCccceee
Confidence 36687777643 3556778889999999999999888776 46799999999999999999999999999999
Q ss_pred EEcchhH
Q 011036 317 YKLDALK 323 (495)
Q Consensus 317 ~~~Da~~ 323 (495)
+.+-|.+
T Consensus 436 i~gqaE~ 442 (534)
T KOG2187|consen 436 IVGQAED 442 (534)
T ss_pred eecchhh
Confidence 9986655
No 177
>smart00359 PUA Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase.
Probab=97.92 E-value=1.7e-05 Score=64.21 Aligned_cols=70 Identities=33% Similarity=0.584 Sum_probs=61.1
Q ss_pred eEEEccchHHHHHcccccccCceeeccCCccCCCeEEEEEcccCCcCCCCCccccccccccccCCCCCCcccCCCceEee
Q 011036 125 EVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIGQ 204 (495)
Q Consensus 125 ~ViVd~~~~eAVLrGA~v~aPGIl~~~~~i~~Gd~VaV~~~l~~~~~~~~w~~~~~rg~~l~~~~~~~~~~~r~~l~Vg~ 204 (495)
+|+|+..+++++++|+.||.|||..++..++.||.|.|+ +.++.++|.
T Consensus 2 ~i~v~~~~~~~i~~g~~v~~~~v~~~~~~~~~g~~V~v~--------------------------------~~~g~~vg~ 49 (77)
T smart00359 2 KVVVDDGAVKAILNGASLLAPGVVRVDGGIKEGDVVVIV--------------------------------DEKGEPLGI 49 (77)
T ss_pred EEEEchhHHHHHHcCCCcccceeEEEeCCcCCCCEEEEE--------------------------------cCCCCEEEE
Confidence 588999999999999999999999999899999999999 446789999
Q ss_pred ccccccccccccc--ccceeeecC
Q 011036 205 GTAMMSRAGIFRA--SEGIAVDMH 226 (495)
Q Consensus 205 GialmSr~elf~~--p~GIaVe~~ 226 (495)
|...++...+.+. ..|+.+++.
T Consensus 50 G~~~~~s~~~~~~~~~~g~~v~~~ 73 (77)
T smart00359 50 GLANMSSEEMARIKGEKGLAVKVR 73 (77)
T ss_pred EEEeCCHHHHHHHhccCceEEEEE
Confidence 9988888877765 478877764
No 178
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=97.91 E-value=0.00014 Score=70.28 Aligned_cols=59 Identities=34% Similarity=0.304 Sum_probs=48.8
Q ss_pred CCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCC-CceEEEEcc
Q 011036 259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLD 320 (495)
Q Consensus 259 pqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl-~~i~~~~~D 320 (495)
..++.+|||++||+|..+..++.. ...|+++|.|.+.+..+++++...++ +.|.+...|
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~---~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d 120 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARR---GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGD 120 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcC
Confidence 356889999999999999988874 25699999999999999999888776 456666655
No 179
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=97.89 E-value=6.6e-05 Score=73.48 Aligned_cols=57 Identities=19% Similarity=0.273 Sum_probs=44.6
Q ss_pred CCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcch
Q 011036 259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321 (495)
Q Consensus 259 pqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da 321 (495)
+.+-.+|.|++||||.-|..|++... ...|+++|.|..++..++.. +.+.++...|.
T Consensus 28 ~~~~~~v~DLGCGpGnsTelL~~RwP-~A~i~GiDsS~~Mla~Aa~r-----lp~~~f~~aDl 84 (257)
T COG4106 28 LERPRRVVDLGCGPGNSTELLARRWP-DAVITGIDSSPAMLAKAAQR-----LPDATFEEADL 84 (257)
T ss_pred ccccceeeecCCCCCHHHHHHHHhCC-CCeEeeccCCHHHHHHHHHh-----CCCCceecccH
Confidence 45667999999999999999999875 47999999999998765332 34455666554
No 180
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.87 E-value=0.00033 Score=72.21 Aligned_cols=84 Identities=23% Similarity=0.325 Sum_probs=59.9
Q ss_pred CcccccCCccccccccEEEccccHH-HHHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHH
Q 011036 227 NRIFQLPSFYDVLEGEIFLQNLPSI-VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKL 305 (495)
Q Consensus 227 ~~v~~lp~~~~~~~G~i~lQ~l~S~-v~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~ 305 (495)
...|+||..-.+.+|- +.|.|+-. -+...-..++|.+||=|+|||=|..+.++...-+..+|+..|.+++|++ +
T Consensus 135 dfc~KLPd~vs~eeGA-l~ePLsV~~HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle----~ 209 (354)
T KOG0024|consen 135 DFCYKLPDNVSFEEGA-LIEPLSVGVHACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLE----L 209 (354)
T ss_pred HheeeCCCCCchhhcc-cccchhhhhhhhhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHH----H
Confidence 4457888765556775 55666522 2333457899999999999998877666443335689999999999985 5
Q ss_pred HHHhCCCceE
Q 011036 306 AAEMGLKCIT 315 (495)
Q Consensus 306 a~~~gl~~i~ 315 (495)
|+++|.+.+.
T Consensus 210 Ak~~Ga~~~~ 219 (354)
T KOG0024|consen 210 AKKFGATVTD 219 (354)
T ss_pred HHHhCCeEEe
Confidence 6668887543
No 181
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=97.86 E-value=0.00014 Score=70.06 Aligned_cols=56 Identities=16% Similarity=0.198 Sum_probs=41.2
Q ss_pred CCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 259 pqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
++||.||||++||.|..-.+|..- .+-..+++|+++.++... -..|++ ++.+|+-.
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~c----v~rGv~---Viq~Dld~ 66 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAAC----VARGVS---VIQGDLDE 66 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHH----HHcCCC---EEECCHHH
Confidence 467999999999999877666653 245899999999998543 334554 66777644
No 182
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=97.86 E-value=6.2e-05 Score=75.31 Aligned_cols=66 Identities=17% Similarity=0.188 Sum_probs=55.7
Q ss_pred HHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 253 ~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
.+..++.++|++|||++||+|..|..++.. ..+|+|+|+++..+..++++++. .++++++..|+++
T Consensus 21 iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~---~~~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~ 86 (258)
T PRK14896 21 IVEYAEDTDGDPVLEIGPGKGALTDELAKR---AKKVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALK 86 (258)
T ss_pred HHHhcCCCCcCeEEEEeCccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHhcc--CCCEEEEEecccc
Confidence 445567889999999999999999999986 35899999999999998887765 4678889988755
No 183
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=97.86 E-value=0.00017 Score=70.67 Aligned_cols=49 Identities=27% Similarity=0.203 Sum_probs=38.8
Q ss_pred CCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCC
Q 011036 258 DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK 312 (495)
Q Consensus 258 dpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~ 312 (495)
.+.++.+|||.+||.|--+..||+. .-.|+|+|.|+..++.+ +++.|+.
T Consensus 34 ~~~~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~---~~~~~l~ 82 (218)
T PRK13255 34 ALPAGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQF---FAENGLT 82 (218)
T ss_pred CCCCCCeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHH---HHHcCCC
Confidence 4456889999999999999999872 24899999999998864 3455553
No 184
>COG5270 PUA domain (predicted RNA-binding domain) [Translation, ribosomal structure and biogenesis]
Probab=97.83 E-value=2.1e-05 Score=74.58 Aligned_cols=72 Identities=29% Similarity=0.446 Sum_probs=66.9
Q ss_pred CCeEEEccchHHHHHcccccccCceeeccCCccCCCeEEEEEcccCCcCCCCCccccccccccccCCCCCCcccCCCceE
Q 011036 123 PKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYI 202 (495)
Q Consensus 123 ~k~ViVd~~~~eAVLrGA~v~aPGIl~~~~~i~~Gd~VaV~~~l~~~~~~~~w~~~~~rg~~l~~~~~~~~~~~r~~l~V 202 (495)
.|-+.|+++++|.+.+|++|++|||+.+..++++||.|.|. +.++.++
T Consensus 128 ~k~~~i~~~~~E~~~Ng~nV~~~gV~e~~~~i~~~d~viVv--------------------------------~~ng~~v 175 (202)
T COG5270 128 KKGRKIDRGAVEPVKNGKNVLPPGVIEAEDSIERGDEVIVV--------------------------------SENGRVV 175 (202)
T ss_pred CccEEEEcccchhhhccCcccCCceeeccCCcccCCeEEEE--------------------------------ecCCEEE
Confidence 67889999999999999999999999999999999999999 5688999
Q ss_pred eecccccccccccccccceeeecC
Q 011036 203 GQGTAMMSRAGIFRASEGIAVDMH 226 (495)
Q Consensus 203 g~GialmSr~elf~~p~GIaVe~~ 226 (495)
|+|++.+++.++....+|..+++.
T Consensus 176 GVg~a~~~~~~~in~~rG~~v~~~ 199 (202)
T COG5270 176 GVGIAKKSYEELINPERGTGVKPR 199 (202)
T ss_pred EEEEEecCHHHhcCcccCcccCCC
Confidence 999999999999988888888764
No 185
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=97.82 E-value=8.7e-05 Score=76.79 Aligned_cols=47 Identities=23% Similarity=0.175 Sum_probs=41.4
Q ss_pred CCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhC
Q 011036 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG 310 (495)
Q Consensus 261 pGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~g 310 (495)
+|.+|||+|||+|..+..++.. ..+|+|+|+|..++...++++++.+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~~~~~~ 190 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAERRAKEAL 190 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcc
Confidence 5889999999999999998873 2589999999999999999988753
No 186
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=97.81 E-value=6.2e-05 Score=78.36 Aligned_cols=47 Identities=19% Similarity=0.379 Sum_probs=36.2
Q ss_pred CCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHh
Q 011036 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEM 309 (495)
Q Consensus 261 pGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~ 309 (495)
++.+|||||||-||-..-... .+-+.++++|++..-|..+++..+.+
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~--~~i~~~vg~Dis~~si~ea~~Ry~~~ 108 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQK--AKIKHYVGIDISEESIEEARERYKQL 108 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHH--TT-SEEEEEES-HHHHHHHHHHHHHH
T ss_pred CCCeEEEecCCCchhHHHHHh--cCCCEEEEEeCCHHHHHHHHHHHHHh
Confidence 789999999999997766554 35689999999999999999888544
No 187
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.81 E-value=0.00022 Score=73.99 Aligned_cols=57 Identities=18% Similarity=0.127 Sum_probs=48.1
Q ss_pred CCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHh-CCC-ceEEEE
Q 011036 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEM-GLK-CITTYK 318 (495)
Q Consensus 261 pGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~-gl~-~i~~~~ 318 (495)
++.+|||+|||.|+....|+.... ..+++|+|++...+..++++++.+ ++. .|++..
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~-~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~ 172 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEY-GWRFVGSDIDPQALASAQAIISANPGLNGAIRLRL 172 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEE
Confidence 568999999999999888887654 469999999999999999999999 775 365543
No 188
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.79 E-value=0.00018 Score=79.05 Aligned_cols=50 Identities=20% Similarity=0.287 Sum_probs=41.3
Q ss_pred CCCeEEEecCCCChHHHHHHHhcCC-------CcEEEEEeCChHHHHHHHHHHHHhC
Q 011036 261 KGERILDMCAAPGGKTTAIASLLRD-------EGEVVAVDRSHNKVMDIQKLAAEMG 310 (495)
Q Consensus 261 pGerVLDmCAaPGgKT~~iA~lm~~-------~G~ViA~D~s~~kv~~i~~~a~~~g 310 (495)
.+.+|||.|||.|+...+++..+.. +-.++++|+++..+..++.++..++
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~ 87 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA 87 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC
Confidence 3468999999999999999876531 2468999999999999988887765
No 189
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.77 E-value=0.0004 Score=73.24 Aligned_cols=69 Identities=16% Similarity=0.101 Sum_probs=55.4
Q ss_pred hhcCCCCCCeEEEecCCCChHHHHHHHhcCC-------------------------------Cc-------EEEEEeCCh
Q 011036 255 HALDPQKGERILDMCAAPGGKTTAIASLLRD-------------------------------EG-------EVVAVDRSH 296 (495)
Q Consensus 255 ~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~-------------------------------~G-------~ViA~D~s~ 296 (495)
.+.+.++++.++|=-||+|......|.+-.| .. .++++|+++
T Consensus 185 ~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~ 264 (381)
T COG0116 185 LLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDP 264 (381)
T ss_pred HHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCH
Confidence 3447788999999999999777766654322 12 377999999
Q ss_pred HHHHHHHHHHHHhCCCc-eEEEEcchhH
Q 011036 297 NKVMDIQKLAAEMGLKC-ITTYKLDALK 323 (495)
Q Consensus 297 ~kv~~i~~~a~~~gl~~-i~~~~~Da~~ 323 (495)
..++.++.||++.|+.. |++.++|+..
T Consensus 265 r~i~~Ak~NA~~AGv~d~I~f~~~d~~~ 292 (381)
T COG0116 265 RHIEGAKANARAAGVGDLIEFKQADATD 292 (381)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEcchhh
Confidence 99999999999999864 8999998754
No 190
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=97.77 E-value=7.3e-05 Score=75.45 Aligned_cols=65 Identities=26% Similarity=0.318 Sum_probs=54.5
Q ss_pred HHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 253 ~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
....+++++|++|||+|||+|..|..++... .+|+|+|.++..+..++++++. ++++++.+|+.+
T Consensus 34 i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~---~~v~~i~~D~~~ 98 (272)
T PRK00274 34 IVDAAGPQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAE---DNLTIIEGDALK 98 (272)
T ss_pred HHHhcCCCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhcc---CceEEEEChhhc
Confidence 3456688899999999999999999999863 3899999999999988776642 578899999865
No 191
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.76 E-value=0.00011 Score=80.50 Aligned_cols=61 Identities=18% Similarity=0.181 Sum_probs=54.1
Q ss_pred CCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchh
Q 011036 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (495)
Q Consensus 261 pGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (495)
.+..+||+|||-|..+.++|.... .--++|+|++.+.+..+.+.+++.|++|+.++..|+.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p-~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~ 407 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNP-DALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLD 407 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHH
Confidence 467899999999999999999754 4689999999999999999999999999988887763
No 192
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.75 E-value=0.00022 Score=68.44 Aligned_cols=37 Identities=30% Similarity=0.440 Sum_probs=34.4
Q ss_pred CCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCCh
Q 011036 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296 (495)
Q Consensus 260 qpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~ 296 (495)
.||++|||++||||.++.-.-+..+++|.|+++|+-|
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh 104 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH 104 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee
Confidence 5799999999999999998889999999999999865
No 193
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.74 E-value=0.0002 Score=73.69 Aligned_cols=70 Identities=14% Similarity=0.205 Sum_probs=58.6
Q ss_pred HHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhHH
Q 011036 253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (495)
Q Consensus 253 ~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~~ 324 (495)
+..+|.++||..++|++.|-||.|..|+..+++ |+|+|+|+++..+...+++.+..+ ..+++++.+....
T Consensus 12 vl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~-g~vigiD~D~~Al~~ak~~L~~~~-~R~~~i~~nF~~l 81 (305)
T TIGR00006 12 VVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGT-GRLIGIDRDPQAIAFAKERLSDFE-GRVVLIHDNFANF 81 (305)
T ss_pred HHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHhhcC-CcEEEEeCCHHHH
Confidence 456678999999999999999999999998865 999999999999999888877653 3577777776553
No 194
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.70 E-value=0.0003 Score=67.49 Aligned_cols=59 Identities=20% Similarity=0.255 Sum_probs=51.1
Q ss_pred eEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 264 RILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 264 rVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
+|+|+++|.|-=+.-+|.+. +..+++.+|.+++|+.-++..++++|+++++++..++..
T Consensus 51 ~~lDiGSGaGfPGipLaI~~-p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~ 109 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIAR-PDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE 109 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH
T ss_pred eEEecCCCCCChhHHHHHhC-CCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc
Confidence 89999999999999998876 567899999999999999999999999999999887643
No 195
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.61 E-value=0.00053 Score=68.24 Aligned_cols=61 Identities=25% Similarity=0.262 Sum_probs=40.6
Q ss_pred CCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhHH
Q 011036 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (495)
Q Consensus 261 pGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~~ 324 (495)
.|.+|| |-|-.--|+..+.|.+...+|+.+|+++.-+.-|.+.|++.|++ |++++.|....
T Consensus 44 ~gk~il--~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~-i~~~~~DlR~~ 104 (243)
T PF01861_consen 44 EGKRIL--FLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP-IEAVHYDLRDP 104 (243)
T ss_dssp TT-EEE--EES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT---EEEE---TTS-
T ss_pred cCCEEE--EEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc-eEEEEeccccc
Confidence 478898 55677777766667676779999999999999999999999999 99999997553
No 196
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=97.58 E-value=0.00014 Score=79.91 Aligned_cols=40 Identities=33% Similarity=0.454 Sum_probs=35.8
Q ss_pred CCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHH
Q 011036 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299 (495)
Q Consensus 260 qpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv 299 (495)
+++..|||+||||||+..-.++.|.-.+.|+++|+-+-|.
T Consensus 43 ~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pikp 82 (780)
T KOG1098|consen 43 EKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIKP 82 (780)
T ss_pred cccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeeccc
Confidence 6788999999999999999999999889999999987553
No 197
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.48 E-value=0.0016 Score=66.48 Aligned_cols=94 Identities=21% Similarity=0.193 Sum_probs=67.0
Q ss_pred ccCCccccccccEEEccccHHHHHhhcCCCCCCeEEEecCCCChHHHHHHHhcCC-CcEEEEEeCChHHHHHHHHHHHHh
Q 011036 231 QLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRD-EGEVVAVDRSHNKVMDIQKLAAEM 309 (495)
Q Consensus 231 ~lp~~~~~~~G~i~lQ~l~S~v~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~-~G~ViA~D~s~~kv~~i~~~a~~~ 309 (495)
+.+...++..-...+|.+-...+..+-.-..--+|||+|||+|---.-+..-... .-+|.-.|.|+.-|+.-++++++.
T Consensus 105 naiGWrGIR~Rk~~l~~~i~~ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~ 184 (311)
T PF12147_consen 105 NAIGWRGIRQRKVHLEELIRQAIARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAER 184 (311)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHc
Confidence 3444444444445555554444444333234458999999999987766554432 358999999999999999999999
Q ss_pred CCCce-EEEEcchhHH
Q 011036 310 GLKCI-TTYKLDALKA 324 (495)
Q Consensus 310 gl~~i-~~~~~Da~~~ 324 (495)
|+..| ++.+.||+..
T Consensus 185 gL~~i~~f~~~dAfd~ 200 (311)
T PF12147_consen 185 GLEDIARFEQGDAFDR 200 (311)
T ss_pred CCccceEEEecCCCCH
Confidence 99987 9999998773
No 198
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.46 E-value=0.00037 Score=68.78 Aligned_cols=50 Identities=30% Similarity=0.508 Sum_probs=37.2
Q ss_pred CeEEEecCCCChHHHHHHHhcCC----CcE----EEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 263 ERILDMCAAPGGKTTAIASLLRD----EGE----VVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 263 erVLDmCAaPGgKT~~iA~lm~~----~G~----ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
.||+|+|||||.++..++..+-+ .++ |+|+|..... .+..|..++.|.++
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-----------PI~GV~qlq~DIT~ 100 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-----------PIEGVIQLQGDITS 100 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-----------ccCceEEeecccCC
Confidence 58999999999999999885533 333 9999997522 24556777777765
No 199
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=97.43 E-value=0.0021 Score=66.06 Aligned_cols=49 Identities=22% Similarity=0.350 Sum_probs=36.9
Q ss_pred CCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhC
Q 011036 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG 310 (495)
Q Consensus 260 qpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~g 310 (495)
-.|.+|||++|+.|..+..++. .+...|+|+|-+..-....+-..+-+|
T Consensus 114 L~gk~VLDIGC~nGY~~frM~~--~GA~~ViGiDP~~lf~~QF~~i~~~lg 162 (315)
T PF08003_consen 114 LKGKRVLDIGCNNGYYSFRMLG--RGAKSVIGIDPSPLFYLQFEAIKHFLG 162 (315)
T ss_pred cCCCEEEEecCCCcHHHHHHhh--cCCCEEEEECCChHHHHHHHHHHHHhC
Confidence 4599999999999998887766 355689999999877665444444344
No 200
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=97.42 E-value=0.00025 Score=70.45 Aligned_cols=64 Identities=27% Similarity=0.331 Sum_probs=56.6
Q ss_pred CCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 258 DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 258 dpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
-.+||.+||=++||.|..-+|++...++.|-|+|++.||.-=.++...|++. +||..+.-||..
T Consensus 153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR--tNiiPIiEDArh 216 (317)
T KOG1596|consen 153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR--TNIIPIIEDARH 216 (317)
T ss_pred eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc--CCceeeeccCCC
Confidence 4689999999999999999999999999999999999998888887777754 678888888755
No 201
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.41 E-value=0.00064 Score=67.68 Aligned_cols=66 Identities=20% Similarity=0.230 Sum_probs=54.3
Q ss_pred HHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 253 ~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
+...+++.++++|||++||+|..|..|+... ..|+++|.++..+..+++++.. ..+++.+..|+++
T Consensus 21 i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~ 86 (253)
T TIGR00755 21 IVEAANVLEGDVVLEIGPGLGALTEPLLKRA---KKVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALK 86 (253)
T ss_pred HHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC---CcEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhc
Confidence 3445678899999999999999999999865 3599999999999888776643 4568888888865
No 202
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.40 E-value=0.0026 Score=72.55 Aligned_cols=64 Identities=20% Similarity=0.152 Sum_probs=52.4
Q ss_pred CCCCeEEEecCCCChHHHHHHHhcC-----------------------------------------CCcEEEEEeCChHH
Q 011036 260 QKGERILDMCAAPGGKTTAIASLLR-----------------------------------------DEGEVVAVDRSHNK 298 (495)
Q Consensus 260 qpGerVLDmCAaPGgKT~~iA~lm~-----------------------------------------~~G~ViA~D~s~~k 298 (495)
++++.++|-+||+|......|.+.. ....|+|+|+++..
T Consensus 189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a 268 (702)
T PRK11783 189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV 268 (702)
T ss_pred CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence 5789999999999988776655311 12379999999999
Q ss_pred HHHHHHHHHHhCCCc-eEEEEcchhH
Q 011036 299 VMDIQKLAAEMGLKC-ITTYKLDALK 323 (495)
Q Consensus 299 v~~i~~~a~~~gl~~-i~~~~~Da~~ 323 (495)
+..+++|++..|+.. |.+...|+.+
T Consensus 269 v~~A~~N~~~~g~~~~i~~~~~D~~~ 294 (702)
T PRK11783 269 IQAARKNARRAGVAELITFEVKDVAD 294 (702)
T ss_pred HHHHHHHHHHcCCCcceEEEeCChhh
Confidence 999999999999965 8888888755
No 203
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.39 E-value=0.00014 Score=67.31 Aligned_cols=59 Identities=17% Similarity=0.213 Sum_probs=46.4
Q ss_pred CCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcch
Q 011036 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321 (495)
Q Consensus 260 qpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da 321 (495)
-.|..++|+|||.|...+ |.-|-..-.|+++|+++..++...+|++++.+. |.+.+.|.
T Consensus 47 iEgkkl~DLgcgcGmLs~--a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvq-idlLqcdi 105 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSI--AFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQ-IDLLQCDI 105 (185)
T ss_pred ccCcchhhhcCchhhhHH--HhhcCCCceEEeeecCHHHHHHHhhchHHhhhh-hheeeeec
Confidence 358999999999998874 444555578999999999999999999998764 34444443
No 204
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.38 E-value=0.0035 Score=60.13 Aligned_cols=62 Identities=19% Similarity=0.182 Sum_probs=53.7
Q ss_pred CCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhHH
Q 011036 262 GERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (495)
Q Consensus 262 GerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~~ 324 (495)
-+-+|+++||+|--++.+++..+++....|.|+++..+..-++-|+.++.. |..+..|....
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~-~~~V~tdl~~~ 105 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVH-IDVVRTDLLSG 105 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCc-cceeehhHHhh
Confidence 567999999999999999999988888999999999999999999988775 66777766543
No 205
>PLN02823 spermine synthase
Probab=97.38 E-value=0.0019 Score=67.46 Aligned_cols=67 Identities=16% Similarity=0.096 Sum_probs=48.4
Q ss_pred cCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhC----CCceEEEEcchhHHH
Q 011036 257 LDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG----LKCITTYKLDALKAV 325 (495)
Q Consensus 257 LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~g----l~~i~~~~~Da~~~~ 325 (495)
..+. ..+||-++.|-|+-+..++.. ....+|+++|+++.-++.+++.....+ -..++++..|+++.+
T Consensus 100 ~~~~-pk~VLiiGgG~G~~~re~l~~-~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L 170 (336)
T PLN02823 100 HHPN-PKTVFIMGGGEGSTAREVLRH-KTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAEL 170 (336)
T ss_pred hCCC-CCEEEEECCCchHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHH
Confidence 3343 358999999999887766653 234689999999999988887765321 245788888887754
No 206
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=97.37 E-value=0.00045 Score=68.73 Aligned_cols=45 Identities=20% Similarity=0.162 Sum_probs=39.7
Q ss_pred CCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHH
Q 011036 262 GERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAA 307 (495)
Q Consensus 262 GerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~ 307 (495)
+.-+||++|-.|-.|.+||...+. -.|+++|+++..+..++++++
T Consensus 59 ~~~~LDIGCNsG~lt~~iak~F~~-r~iLGvDID~~LI~~Ark~~r 103 (288)
T KOG2899|consen 59 PKQALDIGCNSGFLTLSIAKDFGP-RRILGVDIDPVLIQRARKEIR 103 (288)
T ss_pred cceeEeccCCcchhHHHHHHhhcc-ceeeEeeccHHHHHHHHHhcc
Confidence 457999999999999999998764 579999999999998888765
No 207
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.33 E-value=0.0013 Score=64.56 Aligned_cols=61 Identities=18% Similarity=0.240 Sum_probs=54.0
Q ss_pred CCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 262 GERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 262 GerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
+.+++|+++|+|-=+.-+|. +.++..|+-+|...+|+.-++...+++|++++++++..+-+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI-~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~ 128 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAI-AFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEE 128 (215)
T ss_pred CCEEEEeCCCCCCchhhHHH-hccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhh
Confidence 68999999999999998885 45567799999999999999999999999999999876644
No 208
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=97.27 E-value=0.0015 Score=62.09 Aligned_cols=53 Identities=15% Similarity=0.226 Sum_probs=38.7
Q ss_pred CCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcch
Q 011036 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321 (495)
Q Consensus 260 qpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da 321 (495)
+++.+|||++||+|..+..++... ...++++|.|+..+..+++ .+ ++++..|+
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~----~~---~~~~~~d~ 64 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVA----RG---VNVIQGDL 64 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHH----cC---CeEEEEEh
Confidence 468899999999999988887643 3468999999987765432 22 45555554
No 209
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.23 E-value=0.003 Score=61.53 Aligned_cols=63 Identities=24% Similarity=0.341 Sum_probs=56.1
Q ss_pred CCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 258 DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 258 dpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
..++|++||=++||.|.-.+|++...+ .|.|+|++.|+.-..++...|++. .||-.+..||.+
T Consensus 73 pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~R--~Ni~PIL~DA~~ 135 (231)
T COG1889 73 PIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEKR--PNIIPILEDARK 135 (231)
T ss_pred CcCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHhC--CCceeeecccCC
Confidence 468999999999999999999999887 899999999999999999998874 578888888754
No 210
>TIGR00432 arcsn_tRNA_tgt tRNA-guanine transglycosylase, archaeosine-15-forming. This tRNA-guanine transglycosylase (tgt) differs from the tgt of E. coli and other Bacteria in the site of action and the modification that results. It exchanges 7-cyano-7-deazaguanine (preQ0) with guanine at position 15 of archaeal tRNA; this nucleotide is subsequently converted to archaeosine, found exclusively in the Archaea. This enzyme from Haloferax volcanii has been purified, characterized, and partially sequenced and is the basis for identifying this family. In contrast, bacterial tgt catalyzes the exchange of preQ0 or preQ1 for the guanine base at position 34; this nucleotide is subsequently modified to queuosine. Archeoglobus fulgidus has both enzymes, while some other Archaea have just this one.
Probab=97.20 E-value=0.00038 Score=76.77 Aligned_cols=73 Identities=18% Similarity=0.367 Sum_probs=67.0
Q ss_pred CCCeEEEccchHHHHHcccccccCceeeccCCccCCCeEEEEEcccCCcCCCCCccccccccccccCCCCCCcccCCCce
Q 011036 122 PPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLY 201 (495)
Q Consensus 122 ~~k~ViVd~~~~eAVLrGA~v~aPGIl~~~~~i~~Gd~VaV~~~l~~~~~~~~w~~~~~rg~~l~~~~~~~~~~~r~~l~ 201 (495)
....|+|+...++-+..|=+||+|||+.|+++|+.||+|.|. ...+..
T Consensus 465 p~~rV~v~~~~~~f~~~g~~vfak~V~~ad~~IR~~dEV~vv--------------------------------~~~~~l 512 (540)
T TIGR00432 465 PAWRVAVNEESEPFARKGKSVFAKFIIDCDNNIRANDEVLIV--------------------------------NADDEL 512 (540)
T ss_pred CceEEEECCcchhhccCCCcccCCccccCCCCCCCCCeEEEE--------------------------------cCCCcE
Confidence 458899999999999999999999999999999999999999 445678
Q ss_pred EeecccccccccccccccceeeecC
Q 011036 202 IGQGTAMMSRAGIFRASEGIAVDMH 226 (495)
Q Consensus 202 Vg~GialmSr~elf~~p~GIaVe~~ 226 (495)
+|+|++.||..+|.....|++|+.-
T Consensus 513 lavGra~lsg~em~~~~~G~AVkvR 537 (540)
T TIGR00432 513 LATGKALLCAEEMMDLNHGQAVKTR 537 (540)
T ss_pred EEEEehhcCHHHHHhhcCceEEEEe
Confidence 9999999999999999999999864
No 211
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.20 E-value=0.0009 Score=70.96 Aligned_cols=63 Identities=30% Similarity=0.214 Sum_probs=51.4
Q ss_pred CCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCc--eEEEEcchhHH
Q 011036 262 GERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC--ITTYKLDALKA 324 (495)
Q Consensus 262 GerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~--i~~~~~Da~~~ 324 (495)
+-+|||.-||+|--+.-.|.-..+..+|++.|+|++.++.|++|++.++++. +++.+.||-..
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~l 114 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVL 114 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHH
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHH
Confidence 4589999999999999998876667799999999999999999999999986 88888898654
No 212
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=97.15 E-value=0.0036 Score=61.98 Aligned_cols=44 Identities=11% Similarity=0.011 Sum_probs=36.1
Q ss_pred CCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHH
Q 011036 258 DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQK 304 (495)
Q Consensus 258 dpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~ 304 (495)
.+.+|.+||+-.||.|--..+||.. .-.|+|+|.|+..+....+
T Consensus 40 ~~~~~~rvLvPgCGkg~D~~~LA~~---G~~V~GvDlS~~Ai~~~~~ 83 (226)
T PRK13256 40 NINDSSVCLIPMCGCSIDMLFFLSK---GVKVIGIELSEKAVLSFFS 83 (226)
T ss_pred CCCCCCeEEEeCCCChHHHHHHHhC---CCcEEEEecCHHHHHHHHH
Confidence 4456789999999999999999883 2379999999999876533
No 213
>PRK05429 gamma-glutamyl kinase; Provisional
Probab=97.15 E-value=0.00047 Score=72.92 Aligned_cols=63 Identities=29% Similarity=0.461 Sum_probs=57.5
Q ss_pred CCCeEEEccchHHHH-HcccccccCceeeccCCccCCCeEEEEEcccCCcCCCCCccccccccccccCCCCCCcccCCCc
Q 011036 122 PPKEVIVSRKCAEAV-LRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGL 200 (495)
Q Consensus 122 ~~k~ViVd~~~~eAV-LrGA~v~aPGIl~~~~~i~~Gd~VaV~~~l~~~~~~~~w~~~~~rg~~l~~~~~~~~~~~r~~l 200 (495)
....|+||..|++|+ .+||.|++|||++.+..|++||.|.|+ +.++.
T Consensus 279 ~~g~i~vd~gA~~al~~~g~sLl~~Gi~~v~g~f~~gd~V~i~--------------------------------~~~g~ 326 (372)
T PRK05429 279 PAGEIVVDAGAVKALLERGKSLLPAGVTAVEGDFSRGDVVRIV--------------------------------DPDGR 326 (372)
T ss_pred CCCeEEECccHHHHHHhcCCccCccchhheECcccCCCEEEEE--------------------------------CCCCC
Confidence 568999999999999 889999999999999999999999999 44578
Q ss_pred eEeecccccccccccc
Q 011036 201 YIGQGTAMMSRAGIFR 216 (495)
Q Consensus 201 ~Vg~GialmSr~elf~ 216 (495)
.|+.|++.++..++..
T Consensus 327 ~va~G~~~~~s~e~~~ 342 (372)
T PRK05429 327 EIARGLVNYSSDELRR 342 (372)
T ss_pred EEEEEEecCCHHHHHH
Confidence 8999999999988764
No 214
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.09 E-value=0.00077 Score=72.76 Aligned_cols=65 Identities=28% Similarity=0.261 Sum_probs=56.1
Q ss_pred CCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCc-eEEEEcchhH
Q 011036 259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDALK 323 (495)
Q Consensus 259 pqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~-i~~~~~Da~~ 323 (495)
-.++-+|||.-+|+|--++..|..+.+-++|+|.|.+.+.|..+++|++.++... ++..+.||-.
T Consensus 107 ~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~ 172 (525)
T KOG1253|consen 107 EEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANV 172 (525)
T ss_pred ccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHH
Confidence 3467899999999999999999999999999999999999999999999987765 5566666643
No 215
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=97.08 E-value=0.0011 Score=68.48 Aligned_cols=62 Identities=19% Similarity=0.325 Sum_probs=46.6
Q ss_pred CCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCC------ceEEEEcchhH
Q 011036 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK------CITTYKLDALK 323 (495)
Q Consensus 260 qpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~------~i~~~~~Da~~ 323 (495)
++++.+|||+||-||-..-.-. .+-+..|++|+..--|.++++..+.|.-. ...++.+|.++
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~k--AgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~ 183 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDK--AGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFK 183 (389)
T ss_pred ccccccceeccCCcccHhHhhh--hcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccch
Confidence 6799999999999997655432 34578999999999999999998877421 13555555544
No 216
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.01 E-value=0.0005 Score=58.85 Aligned_cols=58 Identities=26% Similarity=0.282 Sum_probs=15.7
Q ss_pred EEecCCCChHHHHHHHhcCCCc--EEEEEeCChHHHHHHHHHHHHhCCC-ceEEEEcchhHH
Q 011036 266 LDMCAAPGGKTTAIASLLRDEG--EVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALKA 324 (495)
Q Consensus 266 LDmCAaPGgKT~~iA~lm~~~G--~ViA~D~s~~kv~~i~~~a~~~gl~-~i~~~~~Da~~~ 324 (495)
|+++++-|.-|..|++.+++.+ +++++|.... ....++.+++.++. .+++++.|+...
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~ 61 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDF 61 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHH
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHH
Confidence 4678889999999999887665 8999999985 33344555556664 488888887654
No 217
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=96.97 E-value=0.0073 Score=60.37 Aligned_cols=70 Identities=17% Similarity=0.161 Sum_probs=50.2
Q ss_pred HhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCC----CceEEEEcchhHHH
Q 011036 254 AHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL----KCITTYKLDALKAV 325 (495)
Q Consensus 254 ~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl----~~i~~~~~Da~~~~ 325 (495)
+..+.+ ...+||=++.|-|+.+..+... ..-.+|+++|+++.-++.+++....... ..++.+..|+.+.+
T Consensus 70 ~~~~~~-~p~~VLiiGgG~G~~~~ell~~-~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l 143 (246)
T PF01564_consen 70 PLLLHP-NPKRVLIIGGGDGGTARELLKH-PPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFL 143 (246)
T ss_dssp HHHHSS-ST-EEEEEESTTSHHHHHHTTS-TT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHH
T ss_pred HhhcCC-CcCceEEEcCCChhhhhhhhhc-CCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHH
Confidence 334444 4679999999999988777653 2346899999999999888887766432 36888888887765
No 218
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=96.95 E-value=0.00075 Score=73.06 Aligned_cols=62 Identities=23% Similarity=0.220 Sum_probs=47.7
Q ss_pred CCeEEEecCCCChHHHHHHHh---cCCCcEEEEEeCChHHHHHHHHHHHHhCC-CceEEEEcchhH
Q 011036 262 GERILDMCAAPGGKTTAIASL---LRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALK 323 (495)
Q Consensus 262 GerVLDmCAaPGgKT~~iA~l---m~~~G~ViA~D~s~~kv~~i~~~a~~~gl-~~i~~~~~Da~~ 323 (495)
+..|||++||.|--....+.. .+.+.+|+|++.+++.+..+++.++++|. +.|++++.|+.+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~ 252 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMRE 252 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTT
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccC
Confidence 567999999999887655443 24466999999999999999998888998 569999988644
No 219
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=96.93 E-value=0.0021 Score=70.30 Aligned_cols=72 Identities=19% Similarity=0.206 Sum_probs=58.2
Q ss_pred cccEEEccccHHHHHhhcCCCCCCeEEEecCCCChHHHHHHHhcCC---CcEEEEEeCChHHHHHHHHHHHHhCC
Q 011036 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRD---EGEVVAVDRSHNKVMDIQKLAAEMGL 311 (495)
Q Consensus 240 ~G~i~lQ~l~S~v~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~---~G~ViA~D~s~~kv~~i~~~a~~~gl 311 (495)
.|+||-=...+.+.+++|.|+++.+|+|-|||+||.-+..+..++. ...+++.|++..-....+.+.--.|.
T Consensus 165 ~GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi 239 (489)
T COG0286 165 AGEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGI 239 (489)
T ss_pred CCccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCC
Confidence 4888877777888999999999999999999999999998888753 37799999988776655555544444
No 220
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=96.92 E-value=0.0015 Score=67.54 Aligned_cols=68 Identities=19% Similarity=0.275 Sum_probs=46.7
Q ss_pred HHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchh
Q 011036 253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (495)
Q Consensus 253 ~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (495)
+...|.++|+..++|++-|-||.|.+|.+...+ |.|+|+|+++..+...+++.+.. -..+.++..+..
T Consensus 12 vl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~~-~~r~~~~~~~F~ 79 (310)
T PF01795_consen 12 VLEALNPKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKKF-DDRFIFIHGNFS 79 (310)
T ss_dssp HHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCCC-CTTEEEEES-GG
T ss_pred HHHhhCcCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhhc-cceEEEEeccHH
Confidence 456788999999999999999999999998877 99999999999887665544432 234666666543
No 221
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=96.89 E-value=0.0031 Score=58.63 Aligned_cols=34 Identities=21% Similarity=0.234 Sum_probs=24.6
Q ss_pred EEEeCChHHHHHHHHHHHHhC---CCceEEEEcchhH
Q 011036 290 VAVDRSHNKVMDIQKLAAEMG---LKCITTYKLDALK 323 (495)
Q Consensus 290 iA~D~s~~kv~~i~~~a~~~g---l~~i~~~~~Da~~ 323 (495)
+|+|.|+.++..+++.++..+ ..+|+++..|+..
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~ 37 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAID 37 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhh
Confidence 479999999998877665322 3468888887643
No 222
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=96.86 E-value=0.0052 Score=62.02 Aligned_cols=67 Identities=19% Similarity=0.215 Sum_probs=57.0
Q ss_pred HHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhHH
Q 011036 253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (495)
Q Consensus 253 ~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~~ 324 (495)
.+...++++++.||++++|.|+.|..|++.. ..|+|+++++..+..+++... ...+++.+..|+++.
T Consensus 22 Iv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~DaLk~ 88 (259)
T COG0030 22 IVEAANISPGDNVLEIGPGLGALTEPLLERA---ARVTAIEIDRRLAEVLKERFA--PYDNLTVINGDALKF 88 (259)
T ss_pred HHHhcCCCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEEeCHHHHHHHHHhcc--cccceEEEeCchhcC
Confidence 4667888999999999999999999998853 579999999999887777655 356799999999883
No 223
>KOG2523 consensus Predicted RNA-binding protein with PUA domain [Translation, ribosomal structure and biogenesis]
Probab=96.84 E-value=0.00048 Score=64.31 Aligned_cols=96 Identities=26% Similarity=0.299 Sum_probs=71.3
Q ss_pred CceEEEe-CCCCccccCCC--CCCCCCCeEEEccchHHHHHcccccccCceeec----cCCccCCCeEEEEEcccCCcCC
Q 011036 100 EYVVFVK-GSGPHTIDYGY--EPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMAC----SSHVEKGDVVAVSVAVEQPTLD 172 (495)
Q Consensus 100 ~~~l~i~-~~gp~~~~~~~--~~~~~~k~ViVd~~~~eAVLrGA~v~aPGIl~~----~~~i~~Gd~VaV~~~l~~~~~~ 172 (495)
-+++++. ..||+-...-. .-....+.+-||+.|-+-||+||+++.||+.+. ++.+++|+.|+|.+
T Consensus 66 G~~~fF~~~dg~~~PTLRllhk~p~~~~~~qvD~GAIkfvlsGAnIMcPGlts~g~~l~~~~ekd~~V~i~a-------- 137 (181)
T KOG2523|consen 66 GEVLFFCHRDGPYIPTLRLLHKYPFIFPHVQVDRGAIKFVLSGANIMCPGLTSPGAKLPPGVEKDTIVAIMA-------- 137 (181)
T ss_pred CEEEEEEecCCCccchhHHHhhCCCccceEEecCcceeeeecCCceEcccCCCCcccCCCCccCCCEEEEEe--------
Confidence 4566664 45676421100 012255889999999999999999999999874 45688899999993
Q ss_pred CCCccccccccccccCCCCCCcccCCCceEeecccccccccccccccceeeecC
Q 011036 173 GGWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMH 226 (495)
Q Consensus 173 ~~w~~~~~rg~~l~~~~~~~~~~~r~~l~Vg~GialmSr~elf~~p~GIaVe~~ 226 (495)
+.+.-.+++|.+.|+..++-...+|+.++.-
T Consensus 138 -----------------------eGK~~alAiG~~~ms~kei~s~nKGiGIE~~ 168 (181)
T KOG2523|consen 138 -----------------------EGKEHALAIGLTKMSAKEIKSVNKGIGIENY 168 (181)
T ss_pred -----------------------cCchhhhhhhhhhhcHHHHHhhccCCceEEE
Confidence 3344577889999999999999999988753
No 224
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.0057 Score=59.88 Aligned_cols=64 Identities=20% Similarity=0.217 Sum_probs=52.5
Q ss_pred EccccHHHH--HhhcC--CCCCCeEEEecCCCChHHHHHHHhcCCCcEE-EEEeCChHHHHHHHHHHHH
Q 011036 245 LQNLPSIVT--AHALD--PQKGERILDMCAAPGGKTTAIASLLRDEGEV-VAVDRSHNKVMDIQKLAAE 308 (495)
Q Consensus 245 lQ~l~S~v~--~~~Ld--pqpGerVLDmCAaPGgKT~~iA~lm~~~G~V-iA~D~s~~kv~~i~~~a~~ 308 (495)
--.+|.|-+ ..+|+ .|||...||+++|+|-.|+.+|.|.+..|.+ +++|.-+.-|+..+++...
T Consensus 62 ~iSAp~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k 130 (237)
T KOG1661|consen 62 TISAPHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDK 130 (237)
T ss_pred EEcchHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHh
Confidence 345666654 45677 8999999999999999999999998888875 8999999888877777654
No 225
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=96.81 E-value=0.0034 Score=65.31 Aligned_cols=60 Identities=18% Similarity=0.217 Sum_probs=46.7
Q ss_pred HHHHHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHH-------HHHHHHHHhCCC
Q 011036 250 SIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM-------DIQKLAAEMGLK 312 (495)
Q Consensus 250 S~v~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~-------~i~~~a~~~gl~ 312 (495)
|.+.+...-++||+.|+|=..|+|+.....|.. .+-|++.|++-..+. .|+.|.+..|..
T Consensus 197 Sli~AN~Amv~pGdivyDPFVGTGslLvsaa~F---Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~ 263 (421)
T KOG2671|consen 197 SLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHF---GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSS 263 (421)
T ss_pred HHHHhhhhccCCCCEEecCccccCceeeehhhh---cceeeccccchheeecccCCCcchhHhHHHhCCc
Confidence 566777777899999999999999987665553 378999999987776 366777777643
No 226
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=96.79 E-value=0.006 Score=60.23 Aligned_cols=61 Identities=18% Similarity=0.196 Sum_probs=46.5
Q ss_pred cccEEEccccHHHHHhhcCCCC--CCeEEEecCCCChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHH
Q 011036 240 EGEIFLQNLPSIVTAHALDPQK--GERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQK 304 (495)
Q Consensus 240 ~G~i~lQ~l~S~v~~~~Ldpqp--GerVLDmCAaPGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~ 304 (495)
+--+.+|-.-+..+..+|+.+. ..-|||++||+|--+..|. +.| ..+++|+|+.++..+++
T Consensus 27 sri~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~----~~Gh~wiGvDiSpsML~~a~~ 90 (270)
T KOG1541|consen 27 SRIVLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLS----DSGHQWIGVDISPSMLEQAVE 90 (270)
T ss_pred ceeeeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheec----cCCceEEeecCCHHHHHHHHH
Confidence 3446778887888888888766 5679999999996664433 345 67899999999987765
No 227
>PRK04270 H/ACA RNA-protein complex component Cbf5p; Reviewed
Probab=96.78 E-value=0.0018 Score=66.61 Aligned_cols=74 Identities=31% Similarity=0.579 Sum_probs=65.4
Q ss_pred CCCeEEEccchHHHHHcccccccCceeeccCCccCCCeEEEEEcccCCcCCCCCccccccccccccCCCCCCcccCCCce
Q 011036 122 PPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLY 201 (495)
Q Consensus 122 ~~k~ViVd~~~~eAVLrGA~v~aPGIl~~~~~i~~Gd~VaV~~~l~~~~~~~~w~~~~~rg~~l~~~~~~~~~~~r~~l~ 201 (495)
+.+.|+|+..+++++++|+.++.||+..++..++.||.|.|+ ...+.+
T Consensus 224 ~LP~V~Lde~aa~~I~nG~~L~~~gi~~~~~~~~~gd~V~I~--------------------------------~~~G~~ 271 (300)
T PRK04270 224 HLPKIIIKDSAVDAIAHGAPLYAPGIAKLEKGIKKGDLVAVF--------------------------------TLKGEL 271 (300)
T ss_pred hCCceEECHHHHHHHHcCCccccCCceecccccCCCCEEEEE--------------------------------eCCCcE
Confidence 568999999999999999999999999888778889998888 234679
Q ss_pred EeecccccccccccccccceeeecCC
Q 011036 202 IGQGTAMMSRAGIFRASEGIAVDMHN 227 (495)
Q Consensus 202 Vg~GialmSr~elf~~p~GIaVe~~~ 227 (495)
+|.|...++.++++...+|+++++..
T Consensus 272 LAIG~~~~ss~el~~~~kG~~vk~~~ 297 (300)
T PRK04270 272 VALGKALMDSDEILKAEKGIVVDLER 297 (300)
T ss_pred EEEEEEccCHHHHHhcCCceEEEEEE
Confidence 99999999999999999999998653
No 228
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=96.77 E-value=0.0011 Score=65.94 Aligned_cols=68 Identities=16% Similarity=0.222 Sum_probs=48.2
Q ss_pred ccccEEEccccHHHHHhhcCCCCCCeEEEecCCCChHHHHHHHhcCC-CcEEEEEeCChHHHHHHHHHHHHh
Q 011036 239 LEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRD-EGEVVAVDRSHNKVMDIQKLAAEM 309 (495)
Q Consensus 239 ~~G~i~lQ~l~S~v~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~-~G~ViA~D~s~~kv~~i~~~a~~~ 309 (495)
++-.+++|+.|..++..- ++-++||.++||-|.-..-|.+--.+ .-.|+|+|-|++.+..++++....
T Consensus 52 kdR~wL~~Efpel~~~~~---~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~ 120 (264)
T KOG2361|consen 52 KDRNWLLREFPELLPVDE---KSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYD 120 (264)
T ss_pred chhHHHHHhhHHhhCccc---cChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccc
Confidence 455667777776543322 22238999999999988877664433 358999999999998887776543
No 229
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.74 E-value=0.01 Score=60.94 Aligned_cols=69 Identities=20% Similarity=0.270 Sum_probs=60.7
Q ss_pred HHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchh
Q 011036 253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (495)
Q Consensus 253 ~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (495)
+...|+|.|+...+|.+-|-||.+.+|...+.+.|.++|+|+++..+...++..+.++ ..++.++....
T Consensus 15 ~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~-~r~~~v~~~F~ 83 (314)
T COG0275 15 VVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD-GRVTLVHGNFA 83 (314)
T ss_pred HHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC-CcEEEEeCcHH
Confidence 5678999999999999999999999999999889999999999999999999888876 55667666543
No 230
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=96.74 E-value=0.0046 Score=64.71 Aligned_cols=55 Identities=29% Similarity=0.300 Sum_probs=38.9
Q ss_pred CCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 259 pqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
+.+|.++||++|+|||+|-.+++. ...|+|+|..+-. .. .+.-..|+.+..|+++
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r---G~~V~AVD~g~l~-----~~--L~~~~~V~h~~~d~fr 263 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR---GMFVTAVDNGPMA-----QS--LMDTGQVEHLRADGFK 263 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc---CCEEEEEechhcC-----Hh--hhCCCCEEEEeccCcc
Confidence 468999999999999999998874 3599999965411 11 1233456666666544
No 231
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=96.72 E-value=0.011 Score=59.57 Aligned_cols=46 Identities=28% Similarity=0.356 Sum_probs=36.9
Q ss_pred CCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCc
Q 011036 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC 313 (495)
Q Consensus 261 pGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~ 313 (495)
...++||++||-|+-|.++|.+.+ +|+|.|.|..+. ...++-|.+.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~---~v~aTE~S~~Mr----~rL~~kg~~v 139 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFK---EVYATEASPPMR----WRLSKKGFTV 139 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcc---eEEeecCCHHHH----HHHHhCCCeE
Confidence 457899999999999999999874 599999998775 4445556653
No 232
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=96.57 E-value=0.026 Score=55.34 Aligned_cols=61 Identities=13% Similarity=0.086 Sum_probs=43.1
Q ss_pred HhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchh
Q 011036 254 AHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (495)
Q Consensus 254 ~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (495)
....|..+..+|||++.|.|..+.+++... +.-+++.+|. +.-+..+++ ...|++..+|.+
T Consensus 93 ~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~------~~rv~~~~gd~f 153 (241)
T PF00891_consen 93 LEAFDFSGFKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKE------ADRVEFVPGDFF 153 (241)
T ss_dssp HHHSTTTTSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH------TTTEEEEES-TT
T ss_pred hccccccCccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhcccc------ccccccccccHH
Confidence 455677788899999999999999998865 4568999999 444444433 456777777764
No 233
>KOG2730 consensus Methylase [General function prediction only]
Probab=96.51 E-value=0.0064 Score=59.96 Aligned_cols=62 Identities=27% Similarity=0.221 Sum_probs=54.2
Q ss_pred CCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCc-eEEEEcchhHHH
Q 011036 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDALKAV 325 (495)
Q Consensus 261 pGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~-i~~~~~Da~~~~ 325 (495)
.-++|+|..||-||-|++.|.. --.|+|+|+++-|+..+++||+-.|+.. |+++++|.++..
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~---~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~ 156 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQ---GPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLA 156 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHh---CCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHH
Confidence 3578999999999999998863 2479999999999999999999999965 999999998864
No 234
>TIGR00425 CBF5 rRNA pseudouridine synthase, putative. This family, found in archaea and eukaryotes, includes the only archaeal proteins markedly similar to bacterial TruB, the tRNA pseudouridine 55 synthase. However, among two related yeast proteins, the archaeal set matches yeast YLR175w far better than YNL292w. The first, termed centromere/microtubule binding protein 5 (CBF5), is an apparent rRNA pseudouridine synthase, while the second is the exclusive tRNA pseudouridine 55 synthase for both cytosolic and mitochondrial compartments. It is unclear whether archaeal proteins found by this model modify tRNA, rRNA, or both.
Probab=96.51 E-value=0.0035 Score=65.21 Aligned_cols=74 Identities=32% Similarity=0.488 Sum_probs=64.7
Q ss_pred CCCeEEEccchHHHHHcccccccCceeeccCCccCCCeEEEEEcccCCcCCCCCccccccccccccCCCCCCcccCCCce
Q 011036 122 PPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLY 201 (495)
Q Consensus 122 ~~k~ViVd~~~~eAVLrGA~v~aPGIl~~~~~i~~Gd~VaV~~~l~~~~~~~~w~~~~~rg~~l~~~~~~~~~~~r~~l~ 201 (495)
+.+.|+|+..+++.+++|+.++.||+..++..++.|+.|.|+ ..++.+
T Consensus 236 ~lP~V~Vd~~~a~~I~NG~~I~~pgv~~~d~~i~~gd~V~V~--------------------------------~~~G~~ 283 (322)
T TIGR00425 236 HLKRVVVKDSAVDAICHGADLMVRGIARLEKGIEKGDTVAVI--------------------------------TLKGEA 283 (322)
T ss_pred hCCceEeCHHHHHHHHCCCccccccccccccccCCCCEEEEE--------------------------------ECCCEE
Confidence 568899999999999999999999999888778888988888 234679
Q ss_pred EeecccccccccccccccceeeecCC
Q 011036 202 IGQGTAMMSRAGIFRASEGIAVDMHN 227 (495)
Q Consensus 202 Vg~GialmSr~elf~~p~GIaVe~~~ 227 (495)
+|+|++.++.++++...+|++|+...
T Consensus 284 LAIGea~~s~~ei~~~~kG~vV~~~~ 309 (322)
T TIGR00425 284 VAVGIALMSTKDIANADKGVVADVKR 309 (322)
T ss_pred EEEEEEecCHHHHhhcCCcEEEEEEE
Confidence 99999999999999888999998753
No 235
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=96.48 E-value=0.019 Score=56.10 Aligned_cols=61 Identities=25% Similarity=0.325 Sum_probs=49.6
Q ss_pred CCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCce-EEEEcch
Q 011036 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCI-TTYKLDA 321 (495)
Q Consensus 260 qpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i-~~~~~Da 321 (495)
..+.+||.+.||+|-.+.|+|..|.+ -...--|.+......|...+++.|++++ ..+.+|+
T Consensus 24 ~~~~~vLEiaSGtGqHa~~FA~~lP~-l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv 85 (204)
T PF06080_consen 24 DSGTRVLEIASGTGQHAVYFAQALPH-LTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDV 85 (204)
T ss_pred ccCceEEEEcCCccHHHHHHHHHCCC-CEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeec
Confidence 34447999999999999999999864 5677789999999999999999998764 4455554
No 236
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=96.45 E-value=0.0086 Score=56.49 Aligned_cols=50 Identities=24% Similarity=0.292 Sum_probs=37.5
Q ss_pred CCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhC
Q 011036 259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG 310 (495)
Q Consensus 259 pqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~g 310 (495)
..+|.+||+++||.|--+..+|.+. ...+|++.|.++ -+..++.|++.++
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~ 92 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNG 92 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT-
T ss_pred hcCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhcc
Confidence 4568899999999998777777763 457999999998 8888999998876
No 237
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=96.44 E-value=0.0029 Score=62.68 Aligned_cols=40 Identities=28% Similarity=0.355 Sum_probs=34.4
Q ss_pred CCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHH
Q 011036 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMD 301 (495)
Q Consensus 260 qpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~ 301 (495)
.+|.+|||++||||+.|..+++. +.+.|+|+|.+++++..
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~--ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQK--GAKEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHH
Confidence 36889999999999999999884 46799999999987654
No 238
>TIGR01027 proB glutamate 5-kinase. Bacterial ProB proteins hit the full length of this model, but the ProB-like domain of delta 1-pyrroline-5-carboxylate synthetase does not hit the C-terminal 100 residues of this model. The noise cutoff is set low enough to hit delta 1-pyrroline-5-carboxylate synthetase and other partial matches to this family.
Probab=96.33 E-value=0.0043 Score=65.46 Aligned_cols=63 Identities=25% Similarity=0.468 Sum_probs=56.0
Q ss_pred CCCeEEEccchHHHHHc-ccccccCceeeccCCccCCCeEEEEEcccCCcCCCCCccccccccccccCCCCCCcccCCCc
Q 011036 122 PPKEVIVSRKCAEAVLR-GAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGL 200 (495)
Q Consensus 122 ~~k~ViVd~~~~eAVLr-GA~v~aPGIl~~~~~i~~Gd~VaV~~~l~~~~~~~~w~~~~~rg~~l~~~~~~~~~~~r~~l 200 (495)
..-.|+||..|.+|+.. |+.++++||++....|++||.|.|. +..+.
T Consensus 271 ~~G~i~vD~gA~~al~~~g~sLl~~Gi~~v~g~F~~gd~v~i~--------------------------------~~~~~ 318 (363)
T TIGR01027 271 PAGEITVDAGAEEALLERGKSLLPAGIVGVEGNFSRGEVVEIL--------------------------------NPEGQ 318 (363)
T ss_pred cCCeEEEChhHHHHHHhcCCccCCccceeeECcccCCCEEEEE--------------------------------CCCCC
Confidence 45689999999999986 8999999999999999999999999 34578
Q ss_pred eEeecccccccccccc
Q 011036 201 YIGQGTAMMSRAGIFR 216 (495)
Q Consensus 201 ~Vg~GialmSr~elf~ 216 (495)
.++.|.+..+.+++.+
T Consensus 319 ~ia~g~~~y~s~~~~~ 334 (363)
T TIGR01027 319 DIGRGLVNYSSDELEK 334 (363)
T ss_pred EEEEEEecCCHHHHHH
Confidence 8999999999888754
No 239
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=96.33 E-value=0.072 Score=50.75 Aligned_cols=65 Identities=25% Similarity=0.301 Sum_probs=53.1
Q ss_pred HhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 254 AHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 254 ~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
+...||..|--||.++.|+|-.|-+|.+.+-....+++++.|+.-+..+.+.. ..+.++.+|++.
T Consensus 41 ~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~-----p~~~ii~gda~~ 105 (194)
T COG3963 41 ASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY-----PGVNIINGDAFD 105 (194)
T ss_pred HhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC-----CCccccccchhh
Confidence 45568999999999999999999999998876778999999999887665542 345577888765
No 240
>COG1370 Prefoldin, molecular chaperone implicated in de novo protein folding, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.0089 Score=55.25 Aligned_cols=74 Identities=27% Similarity=0.397 Sum_probs=67.9
Q ss_pred CCCCeEEEccchHHHHHcccccccCceeeccCCccCCCeEEEEEcccCCcCCCCCccccccccccccCCCCCCcccCCCc
Q 011036 121 KPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGL 200 (495)
Q Consensus 121 ~~~k~ViVd~~~~eAVLrGA~v~aPGIl~~~~~i~~Gd~VaV~~~l~~~~~~~~w~~~~~rg~~l~~~~~~~~~~~r~~l 200 (495)
.+.-.|+|.+.+++.+-.|=+||+.=|+.++++++.||+|.|. +.++.
T Consensus 78 ~P~~RVvV~~E~e~f~r~Gk~VFaKfVi~~D~~iR~~dEvlVV--------------------------------ne~d~ 125 (155)
T COG1370 78 FPRMRVVVSDEAEEFVRKGKSVFAKFVIDVDEEIRAGDEVLVV--------------------------------NEDDE 125 (155)
T ss_pred CCceEEEeccccHHHHHhccchhhhheeccCcccCCCCeEEEE--------------------------------CCCCc
Confidence 3455899999999999999999999999999999999999999 56789
Q ss_pred eEeecccccccccccccccceeeecC
Q 011036 201 YIGQGTAMMSRAGIFRASEGIAVDMH 226 (495)
Q Consensus 201 ~Vg~GialmSr~elf~~p~GIaVe~~ 226 (495)
.++.|.+.+|..+|.....|.+|+..
T Consensus 126 LlAvGra~ls~~E~~~~~~G~AVkVr 151 (155)
T COG1370 126 LLAVGRALLSGAEMREFERGMAVKVR 151 (155)
T ss_pred EEEeeeEeecHHHHhhccccEEEEEe
Confidence 99999999999999988999998764
No 241
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.22 E-value=0.02 Score=59.90 Aligned_cols=51 Identities=25% Similarity=0.354 Sum_probs=38.5
Q ss_pred cCCCCCCeEEEecCC-CChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCc
Q 011036 257 LDPQKGERILDMCAA-PGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC 313 (495)
Q Consensus 257 LdpqpGerVLDmCAa-PGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~ 313 (495)
.+.+||++|+=.++| -|.-+.++|..|+ .+|+|+|+|.+|.+ .|+++|.+.
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e----~a~~lGAd~ 213 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLE----LAKKLGADH 213 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHH----HHHHhCCcE
Confidence 578999999988877 3445566666665 79999999999975 556667654
No 242
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=96.18 E-value=0.08 Score=54.20 Aligned_cols=69 Identities=14% Similarity=0.139 Sum_probs=51.4
Q ss_pred hhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhC----CCceEEEEcchhHHH
Q 011036 255 HALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG----LKCITTYKLDALKAV 325 (495)
Q Consensus 255 ~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~g----l~~i~~~~~Da~~~~ 325 (495)
....|+| .+||=++-|.||.+-.+.... +--+++.+|+++.-++..++...... -+.++.+..|+.+.+
T Consensus 71 ~~ah~~p-k~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v 143 (282)
T COG0421 71 LLAHPNP-KRVLIIGGGDGGTLREVLKHL-PVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFL 143 (282)
T ss_pred hhhCCCC-CeEEEECCCccHHHHHHHhcC-CcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHH
Confidence 3445677 699999999999998887754 35689999999998888877766554 234566666666654
No 243
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.17 E-value=0.037 Score=58.34 Aligned_cols=74 Identities=22% Similarity=0.070 Sum_probs=56.5
Q ss_pred HHHHHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhHH
Q 011036 250 SIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (495)
Q Consensus 250 S~v~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~~ 324 (495)
|+++..+++-.-..+|||.-+|+|--+.-+|--.... +|++.|+|++.++.|++|++.+.-..+..+..||-..
T Consensus 41 sV~~l~~~~~~~~~~v~DalsatGiRgIRya~E~~~~-~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~l 114 (380)
T COG1867 41 SVLVLKAFGKLLPKRVLDALSATGIRGIRYAVETGVV-KVVLNDISPKAVELIKENVRLNSGEDAEVINKDANAL 114 (380)
T ss_pred hHHHHHHhhccCCeEEeecccccchhHhhhhhhcCcc-EEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHH
Confidence 4444444442226789999999999999888766554 8999999999999999999998555566666776543
No 244
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=96.12 E-value=0.0072 Score=58.62 Aligned_cols=57 Identities=33% Similarity=0.330 Sum_probs=45.3
Q ss_pred CCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcc
Q 011036 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320 (495)
Q Consensus 261 pGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~D 320 (495)
.|.+|||+|||+|--+ ||....+..+|++.|..+..+..++-|++.+|.+ |.+...|
T Consensus 79 rgkrVLd~gagsgLva--IAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~-i~~~~~d 135 (218)
T COG3897 79 RGKRVLDLGAGSGLVA--IAAARAGAAEVVAADIDPWLEQAIRLNAAANGVS-ILFTHAD 135 (218)
T ss_pred ccceeeecccccChHH--HHHHHhhhHHHHhcCCChHHHHHhhcchhhccce-eEEeecc
Confidence 5899999999999655 4444456779999999999999999999998853 5554444
No 245
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=96.11 E-value=0.021 Score=50.96 Aligned_cols=57 Identities=16% Similarity=0.154 Sum_probs=49.8
Q ss_pred eEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcch
Q 011036 264 RILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321 (495)
Q Consensus 264 rVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da 321 (495)
.|||++|+.|..+..++.. ...++|+++|.++.....++++++.+++.++.++....
T Consensus 1 ~vlDiGa~~G~~~~~~~~~-~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al 57 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARK-GAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAV 57 (143)
T ss_pred CEEEccCCccHHHHHHHHh-CCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeee
Confidence 4899999999999988875 45569999999999999999999999988888877654
No 246
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.08 E-value=0.013 Score=58.34 Aligned_cols=43 Identities=23% Similarity=0.271 Sum_probs=33.2
Q ss_pred cCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHH
Q 011036 257 LDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDI 302 (495)
Q Consensus 257 LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i 302 (495)
+++.+=.++||++||+|-..-.|-.+. ..+.++|+|.+++.+.
T Consensus 121 ~~~g~F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA 163 (287)
T COG4976 121 ADLGPFRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKA 163 (287)
T ss_pred ccCCccceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHH
Confidence 444455899999999998777765543 4689999999998644
No 247
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=96.05 E-value=0.015 Score=58.35 Aligned_cols=67 Identities=22% Similarity=0.270 Sum_probs=55.7
Q ss_pred HHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhHH
Q 011036 253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (495)
Q Consensus 253 ~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~~ 324 (495)
.+..+++.+++.|||+++|+|..|..|+... ..|+|+|+++..+..+++... .-.+++.+..|+++.
T Consensus 22 Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~--~~~~~~vi~~D~l~~ 88 (262)
T PF00398_consen 22 IVDALDLSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFA--SNPNVEVINGDFLKW 88 (262)
T ss_dssp HHHHHTCGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCT--TCSSEEEEES-TTTS
T ss_pred HHHhcCCCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhh--hcccceeeecchhcc
Confidence 3456788899999999999999999998864 689999999988887777655 356899999999874
No 248
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=96.03 E-value=0.07 Score=55.57 Aligned_cols=93 Identities=13% Similarity=0.083 Sum_probs=59.6
Q ss_pred ccccCCccccccccEEEccccHHHHHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCC---cEEEEEeCChHHHHHHHHH
Q 011036 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDE---GEVVAVDRSHNKVMDIQKL 305 (495)
Q Consensus 229 v~~lp~~~~~~~G~i~lQ~l~S~v~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~---G~ViA~D~s~~kv~~i~~~ 305 (495)
+..+|.+.-..+-.-++|.-..-++.++ .++..|+|++||.|.||..|...+... -.-+++|+|...+....+.
T Consensus 47 It~lpEYYptr~E~~iL~~~~~~Ia~~i---~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~ 123 (319)
T TIGR03439 47 ITYSPEYYLTNDEIEILKKHSSDIAASI---PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAE 123 (319)
T ss_pred HHcCCccCChHHHHHHHHHHHHHHHHhc---CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHh
Confidence 3456666532222223344344444433 467799999999999999988766432 3689999999999888777
Q ss_pred HHHhCCCce--EEEEcchhHH
Q 011036 306 AAEMGLKCI--TTYKLDALKA 324 (495)
Q Consensus 306 a~~~gl~~i--~~~~~Da~~~ 324 (495)
++.-.++.+ ..+.+|....
T Consensus 124 L~~~~~p~l~v~~l~gdy~~~ 144 (319)
T TIGR03439 124 LPLGNFSHVRCAGLLGTYDDG 144 (319)
T ss_pred hhhccCCCeEEEEEEecHHHH
Confidence 763334443 4466666553
No 249
>COG1549 Queuine tRNA-ribosyltransferases, contain PUA domain [Translation, ribosomal structure and biogenesis]
Probab=95.94 E-value=0.0063 Score=65.83 Aligned_cols=182 Identities=20% Similarity=0.299 Sum_probs=101.8
Q ss_pred CCCcccccccccCHHHHH--------HHHHh-h--------chhhHHHHHHHhcCCCCccEEEeecCCCCHHHHHHHHHH
Q 011036 4 SGRYSYSPLLRWNPQVEE--------YFIRA-Y--------GADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLA 66 (495)
Q Consensus 4 ~~~~~~~~~~~~~~~v~~--------~l~~~-~--------~~~~~~~~~~~l~~pp~~~~iRVNTl~~s~~~~~~~L~~ 66 (495)
..-|.+-+.-.|..|=.+ ||.+. | |.++.+..++.+-.+--+|+.-=+| +..+.++.|++
T Consensus 295 a~~YDi~VtG~WseEE~~~v~~~l~~yl~k~~~~~vIAhv~gr~~~E~~~e~v~~~v~~t~~~s~~---~sreal~~l~~ 371 (519)
T COG1549 295 AAHYDIPVTGHWSEEEKEFVAELLKSYLEKTDYRKVIAHVPGREAVERVLEAVDIDVVFTARKSSP---TSREALKNLKN 371 (519)
T ss_pred ccccCccccccccHHHHHHHHHHHHHHhhhcCCceEEEEcCchhHHHHHhhccCCceEEEecCCCC---cCHHHHHHHHH
Confidence 345666667778766332 22221 1 5578999999999999999887742 23445555555
Q ss_pred ---HHHhcCCCccccccccccccCCCcccccc------CCCCCceEEEeCCCCccccC-CCCCCCCC-CeEEEccchHHH
Q 011036 67 ---IIQNSGSSEADVASSVKGRLQNGTISESQ------IPGLEYVVFVKGSGPHTIDY-GYEPDKPP-KEVIVSRKCAEA 135 (495)
Q Consensus 67 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~l~i~~~gp~~~~~-~~~~~~~~-k~ViVd~~~~eA 135 (495)
.|.+........ ... +.. ..+..++ +-.++| .|.+.+|...-+ +.+.+... ..+.++..-|+.
T Consensus 372 ~~~~l~~k~~~~~~~-~~~--~~~-~~v~~yqfG~g~~~~~~~d--~v~g~~~~~~~~~n~ql~~~~~~~ls~t~~g~~~ 445 (519)
T COG1549 372 TLKELESKEKIYPRS-RRY--HNL-RAVARYQFGYGAGRNVLED--LVVGRYPKLFLLINEQLGTFTPNLLSLTPFGAEL 445 (519)
T ss_pred HHHHHhhhhhcchHH-HHH--HHH-HhhhheeccccchhccCch--hhccccceEEEeccceeecccccceeccHhHhhh
Confidence 333221000000 000 000 0011111 223344 233333332211 11111111 122244444443
Q ss_pred HH------------cccccccCceeeccCCccCCCeEEEEEcccCCcCCCCCccccccccccccCCCCCCcccCCCceEe
Q 011036 136 VL------------RGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIG 203 (495)
Q Consensus 136 VL------------rGA~v~aPGIl~~~~~i~~Gd~VaV~~~l~~~~~~~~w~~~~~rg~~l~~~~~~~~~~~r~~l~Vg 203 (495)
++ --.+||+|||++|+++|..||+|-|+ ..+...|
T Consensus 446 ~~~~~~~VEId~f~~~g~v~a~GV~da~edIrpnDeV~vv---------------------------------~~~~v~g 492 (519)
T COG1549 446 LYGGIYWVEIDDFIPRGSVFAPGVVDADEDIRPNDEVVVV---------------------------------HGGEVRG 492 (519)
T ss_pred hhcCeeEEEcCCccccccccccccccCCCCCCcCCEEEEE---------------------------------eCCeEEE
Confidence 22 12358999999999999999999888 1456889
Q ss_pred ecccccccccccccccceeeecCC
Q 011036 204 QGTAMMSRAGIFRASEGIAVDMHN 227 (495)
Q Consensus 204 ~GialmSr~elf~~p~GIaVe~~~ 227 (495)
+|++.|+..+|...++|++|+.-.
T Consensus 493 VGrA~msg~eM~~akkGiaV~VR~ 516 (519)
T COG1549 493 VGRAVMSGREMVEAKKGIAVRVRR 516 (519)
T ss_pred EeeeecChHHhcccCCceEEEEEe
Confidence 999999999999999999998643
No 250
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=95.80 E-value=0.048 Score=57.02 Aligned_cols=57 Identities=26% Similarity=0.229 Sum_probs=45.1
Q ss_pred CCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCc-eEEEEcc
Q 011036 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLD 320 (495)
Q Consensus 261 pGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~-i~~~~~D 320 (495)
.|..|||.+||+|-.++--|. .+.-.|+|+|-|.-. ...+++++.+|+.. |+++++.
T Consensus 60 ~dK~VlDVGcGtGILS~F~ak--AGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gk 117 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAK--AGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGK 117 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHH--hCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecc
Confidence 588999999999977766555 246799999999755 88899999999987 5665553
No 251
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=95.61 E-value=0.066 Score=54.94 Aligned_cols=42 Identities=24% Similarity=0.253 Sum_probs=32.8
Q ss_pred CeEEEecCCCChHHHHHHHhcCC-------CcEEEEEeCChHHHHHHHH
Q 011036 263 ERILDMCAAPGGKTTAIASLLRD-------EGEVVAVDRSHNKVMDIQK 304 (495)
Q Consensus 263 erVLDmCAaPGgKT~~iA~lm~~-------~G~ViA~D~s~~kv~~i~~ 304 (495)
-||+..+|++|-=.--||.++.. .-+|+|.|+|...+..+++
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~ 165 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARS 165 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHh
Confidence 59999999999877666665532 2479999999998876644
No 252
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=95.59 E-value=0.022 Score=55.06 Aligned_cols=58 Identities=16% Similarity=0.091 Sum_probs=49.4
Q ss_pred CeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 263 ERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 263 erVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
+.+.|++||+|-.+.-.|.. .-+|+|+++++.+..-+.+|.+-.|+.++.++..||+.
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~---A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~ 91 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA---AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARD 91 (252)
T ss_pred hceeeccCCcchHHHHHHhh---hceEEEEecCcHHHHHhhhcCCCCCCcceEEEeccccc
Confidence 68999999999877655543 46899999999999988888888899999999999865
No 253
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=95.54 E-value=0.043 Score=53.97 Aligned_cols=43 Identities=26% Similarity=0.238 Sum_probs=35.3
Q ss_pred cCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHH
Q 011036 257 LDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDI 302 (495)
Q Consensus 257 LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i 302 (495)
+..+++.+||+-.||.|--...||.. .-+|+|+|.|+..+..+
T Consensus 33 l~~~~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~~Ai~~~ 75 (218)
T PF05724_consen 33 LALKPGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSPTAIEQA 75 (218)
T ss_dssp HTTSTSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-HHHHHHH
T ss_pred cCCCCCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCHHHHHHH
Confidence 34678899999999999999998883 24899999999988765
No 254
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=95.50 E-value=0.041 Score=50.00 Aligned_cols=52 Identities=25% Similarity=0.330 Sum_probs=46.0
Q ss_pred CCCCCeEEEecCCCChHHHHHHHhcC---CCcEEEEEeCChHHHHHHHHHHHHhC
Q 011036 259 PQKGERILDMCAAPGGKTTAIASLLR---DEGEVVAVDRSHNKVMDIQKLAAEMG 310 (495)
Q Consensus 259 pqpGerVLDmCAaPGgKT~~iA~lm~---~~G~ViA~D~s~~kv~~i~~~a~~~g 310 (495)
.++..+|+|+|||-|--+..+|.++. ..-.|+++|.+...+..+.+++++.+
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~ 77 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLG 77 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhc
Confidence 47788999999999999999999552 34699999999999999999999888
No 255
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=95.48 E-value=0.24 Score=40.69 Aligned_cols=38 Identities=26% Similarity=0.249 Sum_probs=29.0
Q ss_pred EEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHH
Q 011036 265 ILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQ 303 (495)
Q Consensus 265 VLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~ 303 (495)
|||++||+|..+ .++.+......++++|.+...+...+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~ 89 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALAR 89 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHH
Confidence 999999999877 55554433238899999998887633
No 256
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=95.47 E-value=0.031 Score=56.44 Aligned_cols=47 Identities=26% Similarity=0.233 Sum_probs=32.6
Q ss_pred CCCCeEEEecCCCChHHHHHHHhc-CCCcEEEEEeCChHHHHHHHHHHHHh
Q 011036 260 QKGERILDMCAAPGGKTTAIASLL-RDEGEVVAVDRSHNKVMDIQKLAAEM 309 (495)
Q Consensus 260 qpGerVLDmCAaPGgKT~~iA~lm-~~~G~ViA~D~s~~kv~~i~~~a~~~ 309 (495)
..|+++||++||| |.+-+.-+ .---+|+..|-++.-++.+++..+.-
T Consensus 55 ~~g~~llDiGsGP---tiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~ 102 (256)
T PF01234_consen 55 VKGETLLDIGSGP---TIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKE 102 (256)
T ss_dssp S-EEEEEEES-TT-----GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-
T ss_pred cCCCEEEEeCCCc---HHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCC
Confidence 4589999999999 44433322 33348999999999999999887654
No 257
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=95.39 E-value=0.027 Score=57.04 Aligned_cols=41 Identities=17% Similarity=0.164 Sum_probs=33.1
Q ss_pred eEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHH
Q 011036 264 RILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLA 306 (495)
Q Consensus 264 rVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a 306 (495)
+|+|+|||.||.+..+... +--.|+|+|+++..+...++|.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~--G~~~v~a~e~~~~a~~~~~~N~ 42 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA--GFEIVAANEIDKSAAETYEANF 42 (275)
T ss_pred cEEEEccCcchHHHHHHHc--CCEEEEEEeCCHHHHHHHHHhC
Confidence 6999999999998877653 2346789999999988777664
No 258
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=95.38 E-value=0.06 Score=53.71 Aligned_cols=49 Identities=27% Similarity=0.289 Sum_probs=32.6
Q ss_pred HHHhhcCCCCCC--eEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHH
Q 011036 252 VTAHALDPQKGE--RILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQ 303 (495)
Q Consensus 252 v~~~~LdpqpGe--rVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~ 303 (495)
..+.+...++|. +|||.+||-|.-+..+|.+ + ++|+++++|+--...++
T Consensus 64 ~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~-G--~~V~~lErspvia~Ll~ 114 (234)
T PF04445_consen 64 PLAKAVGLKPGMRPSVLDATAGLGRDAFVLASL-G--CKVTGLERSPVIAALLK 114 (234)
T ss_dssp HHHHHTT-BTTB---EEETT-TTSHHHHHHHHH-T----EEEEE--HHHHHHHH
T ss_pred HHHHHhCCCCCCCCEEEECCCcchHHHHHHHcc-C--CeEEEEECCHHHHHHHH
Confidence 455667777765 8999999999999999975 3 58999999986554444
No 259
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=95.36 E-value=0.037 Score=55.30 Aligned_cols=54 Identities=22% Similarity=0.215 Sum_probs=38.6
Q ss_pred ccHHHHHhhcCCCCCC-eEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHH
Q 011036 248 LPSIVTAHALDPQKGE-RILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQK 304 (495)
Q Consensus 248 l~S~v~~~~LdpqpGe-rVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~ 304 (495)
.|+-+.-......+|+ .++|++||+|--+..+|... -+|||.|.|..++..+++
T Consensus 19 YPtdw~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~---k~VIatD~s~~mL~~a~k 73 (261)
T KOG3010|consen 19 YPTDWFKKIASRTEGHRLAWDVGTGNGQAARGIAEHY---KEVIATDVSEAMLKVAKK 73 (261)
T ss_pred CcHHHHHHHHhhCCCcceEEEeccCCCcchHHHHHhh---hhheeecCCHHHHHHhhc
Confidence 3555555555666677 79999999994444556654 479999999999875443
No 260
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=95.29 E-value=0.076 Score=58.34 Aligned_cols=66 Identities=15% Similarity=0.091 Sum_probs=42.8
Q ss_pred cccEEEccccHHHHHhhcCCC--CCCeEEEecCCCChHHHHHHHhcC---CCcEEEEEeCChHHHHHHHHH
Q 011036 240 EGEIFLQNLPSIVTAHALDPQ--KGERILDMCAAPGGKTTAIASLLR---DEGEVVAVDRSHNKVMDIQKL 305 (495)
Q Consensus 240 ~G~i~lQ~l~S~v~~~~Ldpq--pGerVLDmCAaPGgKT~~iA~lm~---~~G~ViA~D~s~~kv~~i~~~ 305 (495)
.|.++.-..-..+.+..++++ |++.|.|||||+||........++ ..-.+++-+...+.....+.+
T Consensus 194 ~g~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mn 264 (501)
T TIGR00497 194 GGEFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMN 264 (501)
T ss_pred CceeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHH
Confidence 566665444444556777776 789999999999998765443332 113477778777765544444
No 261
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=94.77 E-value=0.029 Score=55.37 Aligned_cols=47 Identities=28% Similarity=0.362 Sum_probs=40.3
Q ss_pred HHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHH
Q 011036 253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300 (495)
Q Consensus 253 ~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~ 300 (495)
+.+.|.|++|...+||.-|.||.|..|.+.. ..-.++|+|+++-.-.
T Consensus 35 vl~~lspv~g~sf~DmTfGagGHt~~ilqk~-se~k~yalDrDP~A~~ 81 (303)
T KOG2782|consen 35 VLDILSPVRGRSFVDMTFGAGGHTSSILQKH-SELKNYALDRDPVARK 81 (303)
T ss_pred HHHHcCCCCCceEEEEeccCCcchHHHHHhC-cHhhhhhhccChHHHH
Confidence 5688999999999999999999999998854 4578999999986543
No 262
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=94.56 E-value=0.14 Score=52.09 Aligned_cols=65 Identities=20% Similarity=0.214 Sum_probs=53.9
Q ss_pred hcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCC-ceEEEEcchhH
Q 011036 256 ALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALK 323 (495)
Q Consensus 256 ~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~-~i~~~~~Da~~ 323 (495)
-.+.+|++.||.++=|||.-|..|.+. ..+|+|++.++.++..+.++.+-.... ..+++.+|.+|
T Consensus 53 ka~~k~tD~VLEvGPGTGnLT~~lLe~---~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK 118 (315)
T KOG0820|consen 53 KADLKPTDVVLEVGPGTGNLTVKLLEA---GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLK 118 (315)
T ss_pred ccCCCCCCEEEEeCCCCCHHHHHHHHh---cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEeccccc
Confidence 346789999999999999999988774 358999999999999999888754433 37888888776
No 263
>PRK04148 hypothetical protein; Provisional
Probab=94.34 E-value=0.15 Score=46.67 Aligned_cols=54 Identities=17% Similarity=0.236 Sum_probs=39.2
Q ss_pred CCCCeEEEecCCCCh-HHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 260 QKGERILDMCAAPGG-KTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 260 qpGerVLDmCAaPGg-KT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
..+.+|||+++|.|. .+..|++ + ..+|+|+|+++.++..++++ + +.++..|.+.
T Consensus 15 ~~~~kileIG~GfG~~vA~~L~~-~--G~~ViaIDi~~~aV~~a~~~----~---~~~v~dDlf~ 69 (134)
T PRK04148 15 GKNKKIVELGIGFYFKVAKKLKE-S--GFDVIVIDINEKAVEKAKKL----G---LNAFVDDLFN 69 (134)
T ss_pred ccCCEEEEEEecCCHHHHHHHHH-C--CCEEEEEECCHHHHHHHHHh----C---CeEEECcCCC
Confidence 356899999999986 4445554 2 35999999999987655443 3 4677778765
No 264
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=94.25 E-value=0.28 Score=48.40 Aligned_cols=55 Identities=16% Similarity=0.088 Sum_probs=39.1
Q ss_pred eEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceE-EEEcc
Q 011036 264 RILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCIT-TYKLD 320 (495)
Q Consensus 264 rVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~-~~~~D 320 (495)
.||.++||||.---.. -|.+--.|+.+|-++++-+-+.+.+++..-..+. +..+|
T Consensus 79 ~vLEvgcGtG~Nfkfy--~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ 134 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFY--PWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVAD 134 (252)
T ss_pred ceEEecccCCCCcccc--cCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeec
Confidence 5899999999543221 1335569999999999998888888887554554 44443
No 265
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.24 E-value=0.31 Score=48.81 Aligned_cols=37 Identities=32% Similarity=0.494 Sum_probs=31.7
Q ss_pred CCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHH
Q 011036 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299 (495)
Q Consensus 261 pGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv 299 (495)
+|..+||++|.+||+|--+.+ ++..+|+|+|...+-+
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq--~gAk~VyavDVG~~Ql 115 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQ--RGAKHVYAVDVGYGQL 115 (245)
T ss_pred CCCEEEEecCCCccHHHHHHH--cCCcEEEEEEccCCcc
Confidence 489999999999999988766 4577999999998654
No 266
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=94.15 E-value=0.088 Score=51.05 Aligned_cols=42 Identities=21% Similarity=0.211 Sum_probs=29.8
Q ss_pred CCeEEEecCCCChHHHHHHHhcCC-----C---cEEEEEeCChHHHHHHH
Q 011036 262 GERILDMCAAPGGKTTAIASLLRD-----E---GEVVAVDRSHNKVMDIQ 303 (495)
Q Consensus 262 GerVLDmCAaPGgKT~~iA~lm~~-----~---G~ViA~D~s~~kv~~i~ 303 (495)
--+|+.++|++|-=+--||.++.. . -+|+|.|+|+..++.++
T Consensus 32 ~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar 81 (196)
T PF01739_consen 32 PLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKAR 81 (196)
T ss_dssp -EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHH
T ss_pred CeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHH
Confidence 358999999999877666665533 2 39999999998876553
No 267
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=93.81 E-value=1.2 Score=42.02 Aligned_cols=59 Identities=25% Similarity=0.429 Sum_probs=48.8
Q ss_pred CCCCccEEEEcCCCCCCCCcccchhhhhcHHHHHHhHHHHHHHHHHHHhcCCCCCEEEEEeCCCCC
Q 011036 422 SPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINP 487 (495)
Q Consensus 422 ~~~sFDrVLlDaPCSglG~rp~l~~~~~t~~~l~~~a~~Qrrll~~A~~lLkpGG~LVYSTCTi~p 487 (495)
....||+|+-+=|+.|.|.. .....++.+..+-+.+|..|.++|+++|.|..+-|+-.|
T Consensus 72 ~~~~FDrIiFNFPH~G~~~~-------~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p 130 (166)
T PF10354_consen 72 KNQRFDRIIFNFPHVGGGSE-------DGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP 130 (166)
T ss_pred cCCcCCEEEEeCCCCCCCcc-------chhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC
Confidence 45689999999999985532 234567777888899999999999999999999998766
No 268
>PRK11524 putative methyltransferase; Provisional
Probab=93.74 E-value=0.23 Score=50.51 Aligned_cols=55 Identities=15% Similarity=0.196 Sum_probs=35.5
Q ss_pred CCCCccEEEEcCCCCCCCCc-ccchhhhhcHHHHHHhHHHHHHHHHHHHhcCCCCCEEEEE
Q 011036 422 SPNSFDRVLLDAPCSALGLR-PRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYS 481 (495)
Q Consensus 422 ~~~sFDrVLlDaPCSglG~r-p~l~~~~~t~~~l~~~a~~Qrrll~~A~~lLkpGG~LVYS 481 (495)
+.++||.|+.|||.-. |.. ... ...+. ...+...-..+|..+.++||+||.|+..
T Consensus 24 ~~~siDlIitDPPY~~-~~~~~~~-~~~~~---~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 24 PSESVDLIFADPPYNI-GKNFDGL-IEAWK---EDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred ccCcccEEEECCCccc-ccccccc-ccccc---HHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 4578999999999842 210 000 00111 1233344578999999999999998764
No 269
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=93.71 E-value=0.13 Score=44.97 Aligned_cols=35 Identities=34% Similarity=0.508 Sum_probs=28.0
Q ss_pred ChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCc
Q 011036 273 GGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC 313 (495)
Q Consensus 273 GgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~ 313 (495)
|-.+.++|..++ .+|+++|++..|. +.++++|.+.
T Consensus 3 G~~a~q~ak~~G--~~vi~~~~~~~k~----~~~~~~Ga~~ 37 (130)
T PF00107_consen 3 GLMAIQLAKAMG--AKVIATDRSEEKL----ELAKELGADH 37 (130)
T ss_dssp HHHHHHHHHHTT--SEEEEEESSHHHH----HHHHHTTESE
T ss_pred HHHHHHHHHHcC--CEEEEEECCHHHH----HHHHhhcccc
Confidence 567788898886 8999999999986 4567788654
No 270
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=93.54 E-value=0.67 Score=48.48 Aligned_cols=44 Identities=27% Similarity=0.318 Sum_probs=33.1
Q ss_pred CCCCCCeEEEecCCCChHH-HHHHHhcCCCcEEEEEeCChHHHHHH
Q 011036 258 DPQKGERILDMCAAPGGKT-TAIASLLRDEGEVVAVDRSHNKVMDI 302 (495)
Q Consensus 258 dpqpGerVLDmCAaPGgKT-~~iA~lm~~~G~ViA~D~s~~kv~~i 302 (495)
..+++.+|+=++|||=|.. .++|.+ .+..+|+++|++..|++.+
T Consensus 165 ~~~~~~~V~V~GaGpIGLla~~~a~~-~Ga~~Viv~d~~~~Rl~~A 209 (350)
T COG1063 165 AVRPGGTVVVVGAGPIGLLAIALAKL-LGASVVIVVDRSPERLELA 209 (350)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHH-cCCceEEEeCCCHHHHHHH
Confidence 3456669999999996665 444554 4568999999999998543
No 271
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=93.44 E-value=0.46 Score=48.68 Aligned_cols=60 Identities=22% Similarity=0.282 Sum_probs=46.3
Q ss_pred CCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 262 GERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 262 GerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
|.+|+=|+ ---.|...+.|.+-.-+|..+|++..-+.-+.+.|+++|+++|+++..|..+
T Consensus 153 gK~I~vvG--DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~ 212 (354)
T COG1568 153 GKEIFVVG--DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRN 212 (354)
T ss_pred CCeEEEEc--CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcc
Confidence 66787776 3334444444444455888899999999999999999999999999999755
No 272
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=93.28 E-value=0.29 Score=45.18 Aligned_cols=31 Identities=23% Similarity=0.264 Sum_probs=24.7
Q ss_pred EEEEEeCChHHHHHHHHHHHHhCCCc-eEEEE
Q 011036 288 EVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYK 318 (495)
Q Consensus 288 ~ViA~D~s~~kv~~i~~~a~~~gl~~-i~~~~ 318 (495)
+|+|+|+.+..+...+++.++.++.. ++.+.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~ 32 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLIL 32 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEE
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 58999999999999999999998864 55554
No 273
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=93.22 E-value=0.053 Score=55.77 Aligned_cols=49 Identities=22% Similarity=0.217 Sum_probs=41.4
Q ss_pred CCeEEEecCCCChHHH-HHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCC
Q 011036 262 GERILDMCAAPGGKTT-AIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK 312 (495)
Q Consensus 262 GerVLDmCAaPGgKT~-~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~ 312 (495)
|+.|.||.||-|-+|. -+.. .+...|+|+|.++..|+.++++++.++..
T Consensus 195 ~eviVDLYAGIGYFTlpflV~--agAk~V~A~EwNp~svEaLrR~~~~N~V~ 244 (351)
T KOG1227|consen 195 GEVIVDLYAGIGYFTLPFLVT--AGAKTVFACEWNPWSVEALRRNAEANNVM 244 (351)
T ss_pred cchhhhhhcccceEEeehhhc--cCccEEEEEecCHHHHHHHHHHHHhcchH
Confidence 6999999999999997 3332 35679999999999999999999987653
No 274
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=93.13 E-value=0.36 Score=49.06 Aligned_cols=47 Identities=23% Similarity=0.239 Sum_probs=39.6
Q ss_pred CeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHh
Q 011036 263 ERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEM 309 (495)
Q Consensus 263 erVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~ 309 (495)
.+|||.+||||.-+.++....+...+++++|.|..++...+.+++..
T Consensus 35 ~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~ 81 (274)
T PF09243_consen 35 RSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG 81 (274)
T ss_pred ceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc
Confidence 58999999999877777777777779999999999988777776643
No 275
>PRK00536 speE spermidine synthase; Provisional
Probab=92.80 E-value=1.3 Score=44.97 Aligned_cols=52 Identities=8% Similarity=-0.024 Sum_probs=38.9
Q ss_pred HHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHH
Q 011036 253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAE 308 (495)
Q Consensus 253 ~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~ 308 (495)
++....|.| ++||=++.|-||-.-.+... + .+|+-+|++..-++..++....
T Consensus 65 ppl~~h~~p-k~VLIiGGGDGg~~REvLkh--~-~~v~mVeID~~Vv~~~k~~lP~ 116 (262)
T PRK00536 65 MGGCTKKEL-KEVLIVDGFDLELAHQLFKY--D-THVDFVQADEKILDSFISFFPH 116 (262)
T ss_pred HHHhhCCCC-CeEEEEcCCchHHHHHHHCc--C-CeeEEEECCHHHHHHHHHHCHH
Confidence 344455555 79999999999988776664 2 4999999999888777665443
No 276
>PRK13402 gamma-glutamyl kinase; Provisional
Probab=92.70 E-value=0.15 Score=54.05 Aligned_cols=63 Identities=19% Similarity=0.269 Sum_probs=54.3
Q ss_pred CCCeEEEccchHHHHH-cccccccCceeeccCCccCCCeEEEEEcccCCcCCCCCccccccccccccCCCCCCcccCCCc
Q 011036 122 PPKEVIVSRKCAEAVL-RGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGL 200 (495)
Q Consensus 122 ~~k~ViVd~~~~eAVL-rGA~v~aPGIl~~~~~i~~Gd~VaV~~~l~~~~~~~~w~~~~~rg~~l~~~~~~~~~~~r~~l 200 (495)
..-.|+||..|.+|+. +|+.+...||++....|++||.|.|. +..+.
T Consensus 275 ~~G~i~vd~ga~~al~~~~~sLl~~gi~~v~g~F~~gd~v~i~--------------------------------~~~g~ 322 (368)
T PRK13402 275 PQGEIVVENDFDRALDNHSEQLTSDDVVEIKGDFSVGDTILVR--------------------------------KGDGT 322 (368)
T ss_pred CCeeEEECccHHHHHHhcCCcccccceEEEeCEecCCCEEEEE--------------------------------CCCCC
Confidence 4468999999999997 58999999999999999999999999 33567
Q ss_pred eEeecccccccccccc
Q 011036 201 YIGQGTAMMSRAGIFR 216 (495)
Q Consensus 201 ~Vg~GialmSr~elf~ 216 (495)
.+|.|....+..++-+
T Consensus 323 ~~~rg~~~y~s~~~~~ 338 (368)
T PRK13402 323 KLAKGKSNYSSCLLNF 338 (368)
T ss_pred EEEEEEccCCHHHHHH
Confidence 7888988888877654
No 277
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=92.37 E-value=1.5 Score=45.00 Aligned_cols=50 Identities=26% Similarity=0.329 Sum_probs=33.3
Q ss_pred CCCCCCeEEEecCCCChHHHHHHHhcCCC--cEEEEEeCChHHHHHHHHHHHHhCCCc
Q 011036 258 DPQKGERILDMCAAPGGKTTAIASLLRDE--GEVVAVDRSHNKVMDIQKLAAEMGLKC 313 (495)
Q Consensus 258 dpqpGerVLDmCAaPGgKT~~iA~lm~~~--G~ViA~D~s~~kv~~i~~~a~~~gl~~ 313 (495)
...+|++||=.+| |+-....+++.+.. ..|+++|++..|++ .++++|.+.
T Consensus 166 ~~~~g~~VlV~G~--G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~----~a~~lGa~~ 217 (343)
T PRK09880 166 GDLQGKRVFVSGV--GPIGCLIVAAVKTLGAAEIVCADVSPRSLS----LAREMGADK 217 (343)
T ss_pred CCCCCCEEEEECC--CHHHHHHHHHHHHcCCcEEEEEeCCHHHHH----HHHHcCCcE
Confidence 4568999998764 56554444433222 37999999998874 556678653
No 278
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=92.33 E-value=0.8 Score=48.09 Aligned_cols=55 Identities=27% Similarity=0.224 Sum_probs=38.8
Q ss_pred CCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCC-ceEEEE
Q 011036 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYK 318 (495)
Q Consensus 261 pGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~-~i~~~~ 318 (495)
.|..|||.+||.|-.+...|+ .+..+|+|++-|. +.+-++++.+-+.+. .|++++
T Consensus 177 ~~kiVlDVGaGSGILS~FAaq--AGA~~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~ 232 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQ--AGAKKVYAVEASE-MAQYARKLVASNNLADRITVIP 232 (517)
T ss_pred CCcEEEEecCCccHHHHHHHH--hCcceEEEEehhH-HHHHHHHHHhcCCccceEEEcc
Confidence 378899999999987766555 3567999999985 455666776655443 244443
No 279
>PRK13699 putative methylase; Provisional
Probab=92.12 E-value=0.37 Score=47.63 Aligned_cols=60 Identities=23% Similarity=0.391 Sum_probs=36.9
Q ss_pred CCCCCccEEEEcCCCCCCCCcccchhhhhcHHHHHHhHHHHHHHHHHHHhcCCCCCEEEEEeCCCC
Q 011036 421 FSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTIN 486 (495)
Q Consensus 421 f~~~sFDrVLlDaPCSglG~rp~l~~~~~t~~~l~~~a~~Qrrll~~A~~lLkpGG~LVYSTCTi~ 486 (495)
++.+|+|.|+.|||.- .|.+-.. ..+.. ...+.......+.++.++|||||.++ +-|+.+
T Consensus 16 lpd~SVDLIiTDPPY~-i~~~~~~---~~~~~-~~~~~ew~~~~l~E~~RVLKpgg~l~-if~~~~ 75 (227)
T PRK13699 16 FPDNAVDFILTDPPYL-VGFRDRQ---GRTIA-GDKTDEWLQPACNEMYRVLKKDALMV-SFYGWN 75 (227)
T ss_pred CCccccceEEeCCCcc-cccccCC---Ccccc-cccHHHHHHHHHHHHHHHcCCCCEEE-EEeccc
Confidence 4567999999999984 3332110 00000 01123445688999999999988765 445554
No 280
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=92.04 E-value=1.2 Score=45.62 Aligned_cols=52 Identities=17% Similarity=0.099 Sum_probs=35.0
Q ss_pred hhcCCCCCCeEEEecCCCCh-HHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCC
Q 011036 255 HALDPQKGERILDMCAAPGG-KTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK 312 (495)
Q Consensus 255 ~~LdpqpGerVLDmCAaPGg-KT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~ 312 (495)
...++++|++||=.++|+-| .+.++|..++ ..|+++|++..|. ++++++|.+
T Consensus 159 ~~~~~~~g~~VlV~G~g~iG~~a~~~a~~~G--~~vi~~~~~~~~~----~~a~~~Ga~ 211 (329)
T TIGR02822 159 LRASLPPGGRLGLYGFGGSAHLTAQVALAQG--ATVHVMTRGAAAR----RLALALGAA 211 (329)
T ss_pred HhcCCCCCCEEEEEcCCHHHHHHHHHHHHCC--CeEEEEeCChHHH----HHHHHhCCc
Confidence 34678899999988754322 2234444443 3799999999885 466778875
No 281
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=91.59 E-value=1.4 Score=43.05 Aligned_cols=66 Identities=15% Similarity=0.089 Sum_probs=40.2
Q ss_pred ccccEEEccccHHHHHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHH
Q 011036 239 LEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAA 307 (495)
Q Consensus 239 ~~G~i~lQ~l~S~v~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~ 307 (495)
.-|++...-...++ ..+++++++..+|++||-|.-..+.|... +-...+++++.+......+++.+
T Consensus 22 ~YGEi~~~~~~~il--~~~~l~~~dvF~DlGSG~G~~v~~aal~~-~~~~~~GIEi~~~~~~~a~~~~~ 87 (205)
T PF08123_consen 22 TYGEISPEFVSKIL--DELNLTPDDVFYDLGSGVGNVVFQAALQT-GCKKSVGIEILPELHDLAEELLE 87 (205)
T ss_dssp CGGGCHHHHHHHHH--HHTT--TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHH
T ss_pred ceeecCHHHHHHHH--HHhCCCCCCEEEECCCCCCHHHHHHHHHc-CCcEEEEEEechHHHHHHHHHHH
Confidence 34555333333332 45788999999999999998877776543 45679999999988766554443
No 282
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=91.39 E-value=0.59 Score=46.07 Aligned_cols=40 Identities=15% Similarity=0.120 Sum_probs=20.0
Q ss_pred HHhhcCCCC-CCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCCh
Q 011036 253 TAHALDPQK-GERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296 (495)
Q Consensus 253 ~~~~Ldpqp-GerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~ 296 (495)
.+..|.-.| +-.|-||+||-+- ||....++-.|..+|.-.
T Consensus 63 iI~~l~~~~~~~viaD~GCGdA~----la~~~~~~~~V~SfDLva 103 (219)
T PF05148_consen 63 IIEWLKKRPKSLVIADFGCGDAK----LAKAVPNKHKVHSFDLVA 103 (219)
T ss_dssp HHHHHCTS-TTS-EEEES-TT-H----HHHH--S---EEEEESS-
T ss_pred HHHHHHhcCCCEEEEECCCchHH----HHHhcccCceEEEeeccC
Confidence 344444334 5789999999984 555555545788888754
No 283
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=91.11 E-value=2.2 Score=41.75 Aligned_cols=60 Identities=18% Similarity=0.175 Sum_probs=47.8
Q ss_pred EEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCc-eEEEEcchhHHH
Q 011036 265 ILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDALKAV 325 (495)
Q Consensus 265 VLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~-i~~~~~Da~~~~ 325 (495)
|.|+||==|--..+|..- +-.-.++|+|+++.=+..++++.++.|+.. |++..+|.+..+
T Consensus 1 vaDIGtDHgyLpi~L~~~-~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l 61 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKN-GKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVL 61 (205)
T ss_dssp EEEET-STTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG-
T ss_pred CceeccchhHHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCccccc
Confidence 689999999888887762 223479999999999999999999999865 999999998865
No 284
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=91.04 E-value=1.1 Score=45.04 Aligned_cols=51 Identities=14% Similarity=0.117 Sum_probs=37.9
Q ss_pred eEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 264 RILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 264 rVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
+++|+|||-||.+..+-.. +--.|.|+|+++..+...+.|.. .....|..+
T Consensus 2 ~~~dlFsG~Gg~~~g~~~a--g~~~~~a~e~~~~a~~~y~~N~~-------~~~~~Di~~ 52 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQA--GFEVVWAVEIDPDACETYKANFP-------EVICGDITE 52 (335)
T ss_dssp EEEEET-TTTHHHHHHHHT--TEEEEEEEESSHHHHHHHHHHHT-------EEEESHGGG
T ss_pred cEEEEccCccHHHHHHHhc--CcEEEEEeecCHHHHHhhhhccc-------ccccccccc
Confidence 7999999999999887653 22368899999999888877765 455566544
No 285
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=91.00 E-value=0.6 Score=45.66 Aligned_cols=42 Identities=17% Similarity=0.181 Sum_probs=36.1
Q ss_pred hcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChH
Q 011036 256 ALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHN 297 (495)
Q Consensus 256 ~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~ 297 (495)
+..++||.+|+|+-=|.|-+|..++-..+.+|.|+++=-...
T Consensus 43 FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~ 84 (238)
T COG4798 43 FAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAEL 84 (238)
T ss_pred EeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhh
Confidence 346789999999999999999999999999999999854443
No 286
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=90.92 E-value=1.7 Score=45.62 Aligned_cols=49 Identities=20% Similarity=0.279 Sum_probs=35.6
Q ss_pred hhcCCCCCCeEEEecCCC-ChHHHHHHHhcCCCcEEEEEeCChHHHHHHHH
Q 011036 255 HALDPQKGERILDMCAAP-GGKTTAIASLLRDEGEVVAVDRSHNKVMDIQK 304 (495)
Q Consensus 255 ~~LdpqpGerVLDmCAaP-GgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~ 304 (495)
..+.+++|++||...+|+ |-.+.++|..++ .+.|+++|.+..++..+++
T Consensus 178 ~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g-~~~vi~~~~~~~~~~~~~~ 227 (386)
T cd08283 178 ELAEVKPGDTVAVWGCGPVGLFAARSAKLLG-AERVIAIDRVPERLEMARS 227 (386)
T ss_pred hhccCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH
Confidence 456678999999996655 555666677653 3479999999988765444
No 287
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=90.80 E-value=0.47 Score=44.96 Aligned_cols=41 Identities=20% Similarity=0.242 Sum_probs=27.5
Q ss_pred CCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHH
Q 011036 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQ 303 (495)
Q Consensus 260 qpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~ 303 (495)
.+|+.|||-+||+|. |.+.|..++ -+-+++|+++.-+..++
T Consensus 190 ~~gdiVlDpF~GSGT-T~~aa~~l~--R~~ig~E~~~~y~~~a~ 230 (231)
T PF01555_consen 190 NPGDIVLDPFAGSGT-TAVAAEELG--RRYIGIEIDEEYCEIAK 230 (231)
T ss_dssp -TT-EEEETT-TTTH-HHHHHHHTT---EEEEEESSHHHHHHHH
T ss_pred ccceeeehhhhccCh-HHHHHHHcC--CeEEEEeCCHHHHHHhc
Confidence 579999999999994 333344443 36899999998876554
No 288
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=90.78 E-value=0.58 Score=46.27 Aligned_cols=43 Identities=26% Similarity=0.169 Sum_probs=30.9
Q ss_pred CCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHH
Q 011036 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKL 305 (495)
Q Consensus 261 pGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~ 305 (495)
.-.+.||.+||-|-.|-++. +.---+|-.+|..++-+..+++.
T Consensus 55 ~~~~alDcGAGIGRVTk~lL--l~~f~~VDlVEp~~~Fl~~a~~~ 97 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLL--LPVFDEVDLVEPVEKFLEQAKEY 97 (218)
T ss_dssp --SEEEEET-TTTHHHHHTC--CCC-SEEEEEES-HHHHHHHHHH
T ss_pred CcceEEecccccchhHHHHH--HHhcCEeEEeccCHHHHHHHHHH
Confidence 45789999999999998753 33346899999999988877654
No 289
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=90.61 E-value=1.1 Score=45.78 Aligned_cols=42 Identities=19% Similarity=0.240 Sum_probs=30.8
Q ss_pred CCeEEEecCCCChHHHHHHHhc----CC----CcEEEEEeCChHHHHHHH
Q 011036 262 GERILDMCAAPGGKTTAIASLL----RD----EGEVVAVDRSHNKVMDIQ 303 (495)
Q Consensus 262 GerVLDmCAaPGgKT~~iA~lm----~~----~G~ViA~D~s~~kv~~i~ 303 (495)
--||+-++|++|-=.--||.++ .. .-+|+|.|+|...++.++
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~ 146 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKAR 146 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHh
Confidence 4589999999997655555443 21 358999999998886553
No 290
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=90.61 E-value=2.9 Score=43.26 Aligned_cols=51 Identities=24% Similarity=0.315 Sum_probs=34.5
Q ss_pred hcCCCCCCeEEEecCCCChHHHHHHHhcCCCc--EEEEEeCChHHHHHHHHHHHHhCCC
Q 011036 256 ALDPQKGERILDMCAAPGGKTTAIASLLRDEG--EVVAVDRSHNKVMDIQKLAAEMGLK 312 (495)
Q Consensus 256 ~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G--~ViA~D~s~~kv~~i~~~a~~~gl~ 312 (495)
..+.++|++||=.++ |+-...++++.+..| .|+++|.+..|.. .++++|.+
T Consensus 171 ~~~~~~g~~VlV~G~--g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~----~~~~~Ga~ 223 (358)
T TIGR03451 171 TGGVKRGDSVAVIGC--GGVGDAAIAGAALAGASKIIAVDIDDRKLE----WAREFGAT 223 (358)
T ss_pred ccCCCCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEEcCCHHHHH----HHHHcCCc
Confidence 346789999998753 666555444433334 5999999998865 44567764
No 291
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=90.39 E-value=2.7 Score=41.89 Aligned_cols=45 Identities=18% Similarity=0.191 Sum_probs=29.4
Q ss_pred CCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHH
Q 011036 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLA 306 (495)
Q Consensus 260 qpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a 306 (495)
..|.|||.++-|-|-..|.|-+.- . -+=+-++-++.-++++++.+
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~-p-~~H~IiE~hp~V~krmr~~g 144 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAP-P-DEHWIIEAHPDVLKRMRDWG 144 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcC-C-cceEEEecCHHHHHHHHhcc
Confidence 569999999999987777665432 2 23344677776665555443
No 292
>PRK12939 short chain dehydrogenase; Provisional
Probab=90.19 E-value=5.2 Score=38.34 Aligned_cols=60 Identities=22% Similarity=0.250 Sum_probs=43.4
Q ss_pred CCeEEEecCCCChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 262 GERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 262 GerVLDmCAaPGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
+.+|| +.-|.|+-+.++|..+..+| +|++++++..++..+.+..+..+ ..+.++..|..+
T Consensus 7 ~~~vl-ItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~ 67 (250)
T PRK12939 7 GKRAL-VTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAG-GRAHAIAADLAD 67 (250)
T ss_pred CCEEE-EeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCC
Confidence 56777 56678999999998764444 89999999988877666555444 247778888654
No 293
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=89.54 E-value=0.8 Score=45.40 Aligned_cols=75 Identities=23% Similarity=0.262 Sum_probs=50.8
Q ss_pred ccccCCccccccccEEEccccHHHHHhhcCCCC---CCeEEEecCCCChHHHHHHHhcCCC-cEEEEEeCChHHHHHHHH
Q 011036 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQK---GERILDMCAAPGGKTTAIASLLRDE-GEVVAVDRSHNKVMDIQK 304 (495)
Q Consensus 229 v~~lp~~~~~~~G~i~lQ~l~S~v~~~~Ldpqp---GerVLDmCAaPGgKT~~iA~lm~~~-G~ViA~D~s~~kv~~i~~ 304 (495)
+|+.|.|.. |.=.++|-+..+.|..-+ .-++.|-|||.|...|-++-|-++. ..|+|-|++...+..+++
T Consensus 22 L~sApG~p~------FPVRLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~k 95 (246)
T PF11599_consen 22 LYSAPGFPA------FPVRLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARK 95 (246)
T ss_dssp S--BTTB----------HHHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHH
T ss_pred EecCCCCCC------ccHHHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHH
Confidence 355666642 556677777777665433 2379999999999999998876543 479999999999998888
Q ss_pred HHHHh
Q 011036 305 LAAEM 309 (495)
Q Consensus 305 ~a~~~ 309 (495)
|...+
T Consensus 96 NL~LL 100 (246)
T PF11599_consen 96 NLSLL 100 (246)
T ss_dssp HHHCC
T ss_pred hhhhc
Confidence 87544
No 294
>PRK11524 putative methyltransferase; Provisional
Probab=89.28 E-value=0.78 Score=46.65 Aligned_cols=44 Identities=14% Similarity=0.098 Sum_probs=34.6
Q ss_pred CCCCeEEEecCCCChHHHHHH-HhcCCCcEEEEEeCChHHHHHHHHHHH
Q 011036 260 QKGERILDMCAAPGGKTTAIA-SLLRDEGEVVAVDRSHNKVMDIQKLAA 307 (495)
Q Consensus 260 qpGerVLDmCAaPGgKT~~iA-~lm~~~G~ViA~D~s~~kv~~i~~~a~ 307 (495)
.+|+.|||-++|+| ||.+| ..++ -.-+++|+++.-++.+++..+
T Consensus 207 ~~GD~VLDPF~GSG--TT~~AA~~lg--R~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 207 NPGDIVLDPFAGSF--TTGAVAKASG--RKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred CCCCEEEECCCCCc--HHHHHHHHcC--CCEEEEeCCHHHHHHHHHHHH
Confidence 68999999999999 44444 4443 468999999999988877764
No 295
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=89.12 E-value=0.94 Score=44.45 Aligned_cols=81 Identities=22% Similarity=0.251 Sum_probs=41.5
Q ss_pred ccEEEccccHHHHHhhc--CCCCCCeEEEecCCCChHHHHHHHhc---CCCcEEEEEeCChHHHHHHHHHHHHhCCCceE
Q 011036 241 GEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGKTTAIASLL---RDEGEVVAVDRSHNKVMDIQKLAAEMGLKCIT 315 (495)
Q Consensus 241 G~i~lQ~l~S~v~~~~L--dpqpGerVLDmCAaPGgKT~~iA~lm---~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~ 315 (495)
|..++|..--|++..-| ..|| +.|+..+.+-||-....|.++ +++|+|+++|++-+..........-| .+.|+
T Consensus 11 G~pi~q~P~Dm~~~qeli~~~kP-d~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~-~~rI~ 88 (206)
T PF04989_consen 11 GRPIIQYPQDMVAYQELIWELKP-DLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPM-SPRIT 88 (206)
T ss_dssp TEEESS-HHHHHHHHHHHHHH---SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG-----TTEE
T ss_pred CeehhcCHHHHHHHHHHHHHhCC-CeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccc-cCceE
Confidence 55555554444443322 3344 599999999999999888654 57899999999643332111111112 14688
Q ss_pred EEEcchhH
Q 011036 316 TYKLDALK 323 (495)
Q Consensus 316 ~~~~Da~~ 323 (495)
++++|...
T Consensus 89 ~i~Gds~d 96 (206)
T PF04989_consen 89 FIQGDSID 96 (206)
T ss_dssp EEES-SSS
T ss_pred EEECCCCC
Confidence 88887643
No 296
>PRK07102 short chain dehydrogenase; Provisional
Probab=89.02 E-value=9.4 Score=36.72 Aligned_cols=59 Identities=20% Similarity=0.257 Sum_probs=41.6
Q ss_pred eEEEecCCCChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 264 RILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 264 rVLDmCAaPGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
+|| +.-|.||-+.+++..+..+| .|+++|++..+...+.+.....+-.++.++..|..+
T Consensus 3 ~vl-ItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~ 62 (243)
T PRK07102 3 KIL-IIGATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILD 62 (243)
T ss_pred EEE-EEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 455 34467889999888664445 899999999888766555544444467788887654
No 297
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=88.80 E-value=5.1 Score=39.97 Aligned_cols=51 Identities=33% Similarity=0.350 Sum_probs=34.6
Q ss_pred hcCCCCCCeEEEecCCCChHHHHHHHhcCCCc--EEEEEeCChHHHHHHHHHHHHhCCC
Q 011036 256 ALDPQKGERILDMCAAPGGKTTAIASLLRDEG--EVVAVDRSHNKVMDIQKLAAEMGLK 312 (495)
Q Consensus 256 ~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G--~ViA~D~s~~kv~~i~~~a~~~gl~ 312 (495)
.+.+++|++||=+++ |+-...++++.+..| .|+++|++..|.. +++++|.+
T Consensus 115 ~~~~~~g~~VlV~G~--G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~----~a~~~Ga~ 167 (280)
T TIGR03366 115 AAGDLKGRRVLVVGA--GMLGLTAAAAAAAAGAARVVAADPSPDRRE----LALSFGAT 167 (280)
T ss_pred hccCCCCCEEEEECC--CHHHHHHHHHHHHcCCCEEEEECCCHHHHH----HHHHcCCc
Confidence 356679999998854 666655544443334 5999999998864 55667764
No 298
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=88.77 E-value=4.4 Score=41.00 Aligned_cols=54 Identities=20% Similarity=0.352 Sum_probs=35.0
Q ss_pred hhcCCCCCCeEEEecCCCChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHHhCCCc
Q 011036 255 HALDPQKGERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKC 313 (495)
Q Consensus 255 ~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~~gl~~ 313 (495)
+...+++|++||=..| .|+-...++++.+..| +|++++.+..|.. .++++|.+.
T Consensus 132 ~~~~~~~g~~VLI~ga-~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~----~~~~lGa~~ 186 (325)
T TIGR02825 132 EICGVKGGETVMVNAA-AGAVGSVVGQIAKLKGCKVVGAAGSDEKVA----YLKKLGFDV 186 (325)
T ss_pred HHhCCCCCCEEEEeCC-ccHHHHHHHHHHHHcCCEEEEEeCCHHHHH----HHHHcCCCE
Confidence 3456789999996654 3555555444443333 7999999988864 445577653
No 299
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=88.62 E-value=4.9 Score=40.88 Aligned_cols=53 Identities=23% Similarity=0.308 Sum_probs=35.0
Q ss_pred HhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCc--EEEEEeCChHHHHHHHHHHHHhCCC
Q 011036 254 AHALDPQKGERILDMCAAPGGKTTAIASLLRDEG--EVVAVDRSHNKVMDIQKLAAEMGLK 312 (495)
Q Consensus 254 ~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G--~ViA~D~s~~kv~~i~~~a~~~gl~ 312 (495)
.+.+++++|++||=.+ .|+-...++++.+..| .|+++|.+..|.. .++++|.+
T Consensus 156 l~~~~~~~g~~vlV~G--~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~----~~~~~ga~ 210 (339)
T cd08239 156 LRRVGVSGRDTVLVVG--AGPVGLGALMLARALGAEDVIGVDPSPERLE----LAKALGAD 210 (339)
T ss_pred HHhcCCCCCCEEEEEC--CCHHHHHHHHHHHHcCCCEEEEECCCHHHHH----HHHHhCCC
Confidence 3456788999999874 3666555444332222 4999999998864 45567764
No 300
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=88.46 E-value=0.41 Score=51.54 Aligned_cols=64 Identities=20% Similarity=0.215 Sum_probs=55.4
Q ss_pred CCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCC--ceEEEEcchhHHHH
Q 011036 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK--CITTYKLDALKAVR 326 (495)
Q Consensus 260 qpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~--~i~~~~~Da~~~~~ 326 (495)
+||+.|-|+|||-|-.+.-++. + ...|+|.|.++..++-++.+++.+.+. .|+.+.+||-..++
T Consensus 248 k~gevv~D~FaGvGPfa~Pa~k--K-~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Flr 313 (495)
T KOG2078|consen 248 KPGEVVCDVFAGVGPFALPAAK--K-GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFLR 313 (495)
T ss_pred CCcchhhhhhcCcCccccchhh--c-CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHhh
Confidence 6799999999999988876654 2 379999999999999999999988774 49999999988875
No 301
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=88.26 E-value=3 Score=43.40 Aligned_cols=51 Identities=27% Similarity=0.336 Sum_probs=34.6
Q ss_pred hcCCCCCCeEEEecCCCChHHHHHHHhcCCCc--EEEEEeCChHHHHHHHHHHHHhCCC
Q 011036 256 ALDPQKGERILDMCAAPGGKTTAIASLLRDEG--EVVAVDRSHNKVMDIQKLAAEMGLK 312 (495)
Q Consensus 256 ~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G--~ViA~D~s~~kv~~i~~~a~~~gl~ 312 (495)
...+++|++||=.++ |+-...++++.+..| .|+++|.+..|.. .++++|.+
T Consensus 186 ~~~i~~g~~VlV~G~--G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~----~a~~~Ga~ 238 (371)
T cd08281 186 TAGVRPGQSVAVVGL--GGVGLSALLGAVAAGASQVVAVDLNEDKLA----LARELGAT 238 (371)
T ss_pred ccCCCCCCEEEEECC--CHHHHHHHHHHHHcCCCcEEEEcCCHHHHH----HHHHcCCc
Confidence 356789999998754 565555444433333 6999999999865 45567764
No 302
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=87.99 E-value=6.5 Score=40.24 Aligned_cols=50 Identities=24% Similarity=0.268 Sum_probs=32.9
Q ss_pred hcCCCCCCeEEEecCCCChHHHH---HHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCC
Q 011036 256 ALDPQKGERILDMCAAPGGKTTA---IASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK 312 (495)
Q Consensus 256 ~LdpqpGerVLDmCAaPGgKT~~---iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~ 312 (495)
..+.++|++||=.++ |+-... +|..++ ...|+++|.+..|.. .++++|.+
T Consensus 155 ~~~~~~g~~vlV~G~--g~vG~~~~~~a~~~G-~~~v~~~~~~~~~~~----~~~~~Ga~ 207 (347)
T PRK10309 155 LAQGCEGKNVIIIGA--GTIGLLAIQCAVALG-AKSVTAIDINSEKLA----LAKSLGAM 207 (347)
T ss_pred hcCCCCCCEEEEECC--CHHHHHHHHHHHHcC-CCeEEEECCCHHHHH----HHHHcCCc
Confidence 456788999998843 555444 444443 235899999998865 34567764
No 303
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=87.83 E-value=0.64 Score=50.99 Aligned_cols=48 Identities=27% Similarity=0.436 Sum_probs=33.4
Q ss_pred CCCCCCccEEEEcCCCCCCCCcccchhhhhcHHHHHHhHHHHHHHHHHHHhcCCCCCEEEEEeCCCC
Q 011036 420 GFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTIN 486 (495)
Q Consensus 420 ~f~~~sFDrVLlDaPCSglG~rp~l~~~~~t~~~l~~~a~~Qrrll~~A~~lLkpGG~LVYSTCTi~ 486 (495)
+|+.++||.|= ||.-.+. | ...+ --+|-..=++|||||.+|+|.--++
T Consensus 176 Pfp~~~fDmvH----csrc~i~---W----~~~~--------g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 176 PFPSNAFDMVH----CSRCLIP---W----HPND--------GFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred cCCccchhhhh----ccccccc---c----hhcc--------cceeehhhhhhccCceEEecCCccc
Confidence 78889999985 6665432 1 1111 1245666789999999999988777
No 304
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=87.63 E-value=11 Score=35.80 Aligned_cols=59 Identities=22% Similarity=0.242 Sum_probs=41.5
Q ss_pred CCeEEEecCCCChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 262 GERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 262 GerVLDmCAaPGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
|.+||=.+| .|+.+.++++.+..+| +|++++++..+...+.+..... .++..+..|...
T Consensus 5 ~~~vlItGa-~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dl~~ 64 (238)
T PRK05786 5 GKKVAIIGV-SEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY--GNIHYVVGDVSS 64 (238)
T ss_pred CcEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEECCCCC
Confidence 567776666 5889999998775445 8999999998877665444433 246677777643
No 305
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=87.56 E-value=12 Score=36.81 Aligned_cols=61 Identities=20% Similarity=0.125 Sum_probs=41.9
Q ss_pred CCCeEEEecCCC-ChHHHHHHHhcCCC-cEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 261 KGERILDMCAAP-GGKTTAIASLLRDE-GEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 261 pGerVLDmCAaP-GgKT~~iA~lm~~~-G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
.|..+|=-+|+. +|...++|..+..+ ..|+.+|++......+.+.+++.+ .+.++.+|..+
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~--~~~~~~~D~~~ 71 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELD--APIFLPLDVRE 71 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhc--cceEEecCcCC
Confidence 477899889888 48888888766433 488888998765555666666554 23456667543
No 306
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=87.55 E-value=6.8 Score=40.33 Aligned_cols=50 Identities=24% Similarity=0.353 Sum_probs=34.8
Q ss_pred cCCCCCCeEEEecCCC-ChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCC
Q 011036 257 LDPQKGERILDMCAAP-GGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK 312 (495)
Q Consensus 257 LdpqpGerVLDmCAaP-GgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~ 312 (495)
..+++|++||=++||+ |.-+.++|..++ ..|+++|++..|+. .++++|.+
T Consensus 162 ~~~~~g~~VlV~G~G~vG~~a~~~a~~~G--~~vi~~~~~~~~~~----~~~~~Ga~ 212 (349)
T TIGR03201 162 AGLKKGDLVIVIGAGGVGGYMVQTAKAMG--AAVVAIDIDPEKLE----MMKGFGAD 212 (349)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHH----HHHHhCCc
Confidence 5678999999988744 334455555553 37999999998865 44556764
No 307
>PRK06914 short chain dehydrogenase; Provisional
Probab=87.28 E-value=9.6 Score=37.50 Aligned_cols=61 Identities=21% Similarity=0.245 Sum_probs=43.3
Q ss_pred CCeEEEecCCCChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHHhCC-CceEEEEcchhH
Q 011036 262 GERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALK 323 (495)
Q Consensus 262 GerVLDmCAaPGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~~gl-~~i~~~~~Da~~ 323 (495)
+.+|| ++-|.|+-+.+++..+..+| .|++++++..++..+.+..+..+. ..+.++..|..+
T Consensus 3 ~k~~l-ItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d 65 (280)
T PRK06914 3 KKIAI-VTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTD 65 (280)
T ss_pred CCEEE-EECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCC
Confidence 34444 34567888888887654445 899999999988887776665554 357788888754
No 308
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=87.21 E-value=11 Score=36.34 Aligned_cols=60 Identities=23% Similarity=0.265 Sum_probs=42.5
Q ss_pred CCeEEEecCCCChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 262 GERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 262 GerVLDmCAaPGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
+.+|| +.-|.|+.+.+++..+..+| +|+.++++..+...+.+..+..+ .++..+..|...
T Consensus 4 ~~~vl-ItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~ 64 (258)
T PRK12429 4 GKVAL-VTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAG-GKAIGVAMDVTD 64 (258)
T ss_pred CCEEE-EECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEcCCCC
Confidence 44566 55668999999998664445 89999999988876665555444 346777777643
No 309
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=87.13 E-value=3.5 Score=42.28 Aligned_cols=61 Identities=18% Similarity=0.198 Sum_probs=39.4
Q ss_pred CeEEEecCCCChHHHHHHH-hcCCCcEEEEEeCChHHHHHHHHHHH-HhCCCc-eEEEEcchhH
Q 011036 263 ERILDMCAAPGGKTTAIAS-LLRDEGEVVAVDRSHNKVMDIQKLAA-EMGLKC-ITTYKLDALK 323 (495)
Q Consensus 263 erVLDmCAaPGgKT~~iA~-lm~~~G~ViA~D~s~~kv~~i~~~a~-~~gl~~-i~~~~~Da~~ 323 (495)
.+|+=+++||=-.|+.+.. .......|+.+|+++..+...+++.+ .+|+.. ++++..|...
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~ 185 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLD 185 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGG
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhc
Confidence 4999999999888876543 33334689999999999999999988 667654 7888888643
No 310
>PRK13699 putative methylase; Provisional
Probab=87.04 E-value=1.5 Score=43.42 Aligned_cols=48 Identities=19% Similarity=0.191 Sum_probs=36.0
Q ss_pred CCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHh
Q 011036 259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEM 309 (495)
Q Consensus 259 pqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~ 309 (495)
-++|+.|||-++|+|. |.+|...- .-..+++|+++.-+..+++..++.
T Consensus 161 s~~g~~vlDpf~Gsgt--t~~aa~~~-~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 161 THPNAIVLDPFAGSGS--TCVAALQS-GRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCCCEEEeCCCCCCH--HHHHHHHc-CCCEEEEecCHHHHHHHHHHHHHH
Confidence 3689999999999994 44544332 246889999998888877776653
No 311
>PRK07326 short chain dehydrogenase; Provisional
Probab=86.30 E-value=12 Score=35.64 Aligned_cols=59 Identities=20% Similarity=0.175 Sum_probs=39.9
Q ss_pred CCeEEEecCCCChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 262 GERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 262 GerVLDmCAaPGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
+.+||=.+ |.|+.+.+++..+..+| +|+++++++.+...+.+..+.. ..+.++.+|...
T Consensus 6 ~~~ilItG-atg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~D~~~ 65 (237)
T PRK07326 6 GKVALITG-GSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK--GNVLGLAADVRD 65 (237)
T ss_pred CCEEEEEC-CCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc--CcEEEEEccCCC
Confidence 56677555 58889999987664444 8999999988776554433321 346777777543
No 312
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=85.82 E-value=6.2 Score=40.36 Aligned_cols=78 Identities=28% Similarity=0.380 Sum_probs=53.3
Q ss_pred EEEccccHH-HHHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHHhCCCc-eEEEEc
Q 011036 243 IFLQNLPSI-VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKL 319 (495)
Q Consensus 243 i~lQ~l~S~-v~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~~gl~~-i~~~~~ 319 (495)
+++|-+-.. +.-.+..+|||+.||= -||-||-...+.++++-.| .+||.-.+..|. +.|+++|.+. |....-
T Consensus 127 ~llq~lTAy~ll~e~y~vkpGhtVlv-haAAGGVGlll~Ql~ra~~a~tI~~asTaeK~----~~akenG~~h~I~y~~e 201 (336)
T KOG1197|consen 127 LLLQGLTAYMLLFEAYNVKPGHTVLV-HAAAGGVGLLLCQLLRAVGAHTIATASTAEKH----EIAKENGAEHPIDYSTE 201 (336)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEE-EeccccHHHHHHHHHHhcCcEEEEEeccHHHH----HHHHhcCCcceeeccch
Confidence 345554443 3345668999999995 5666888888888876544 788888888886 4667778764 555556
Q ss_pred chhHHH
Q 011036 320 DALKAV 325 (495)
Q Consensus 320 Da~~~~ 325 (495)
|..+.+
T Consensus 202 D~v~~V 207 (336)
T KOG1197|consen 202 DYVDEV 207 (336)
T ss_pred hHHHHH
Confidence 665544
No 313
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=85.55 E-value=5.6 Score=41.00 Aligned_cols=46 Identities=24% Similarity=0.228 Sum_probs=30.7
Q ss_pred CCCCCeEEEecCCCChHHH---HHHHhcCCCcEEEEEeC---ChHHHHHHHHHHHHhCCC
Q 011036 259 PQKGERILDMCAAPGGKTT---AIASLLRDEGEVVAVDR---SHNKVMDIQKLAAEMGLK 312 (495)
Q Consensus 259 pqpGerVLDmCAaPGgKT~---~iA~lm~~~G~ViA~D~---s~~kv~~i~~~a~~~gl~ 312 (495)
+++|++||=.++ |+-+. ++|..++ ..|+++++ +..|.+ .++++|.+
T Consensus 170 ~~~g~~vlI~G~--G~vG~~a~q~ak~~G--~~vi~~~~~~~~~~~~~----~~~~~Ga~ 221 (355)
T cd08230 170 TWNPRRALVLGA--GPIGLLAALLLRLRG--FEVYVLNRRDPPDPKAD----IVEELGAT 221 (355)
T ss_pred cCCCCEEEEECC--CHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHH----HHHHcCCE
Confidence 578999998865 55544 4444443 27999998 566654 55677764
No 314
>PRK07576 short chain dehydrogenase; Provisional
Probab=85.52 E-value=18 Score=35.60 Aligned_cols=60 Identities=20% Similarity=0.197 Sum_probs=41.8
Q ss_pred CCCeEEEecCCCChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchh
Q 011036 261 KGERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (495)
Q Consensus 261 pGerVLDmCAaPGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (495)
++.+||=.+ |.||-+.+++..+...| .|+++|++..++..+.+.....+. .+.++..|..
T Consensus 8 ~~k~ilItG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~ 68 (264)
T PRK07576 8 AGKNVVVVG-GTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGP-EGLGVSADVR 68 (264)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC-ceEEEECCCC
Confidence 467787666 57888888887664445 899999998887766555544442 3566777764
No 315
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=85.30 E-value=7.4 Score=39.01 Aligned_cols=52 Identities=25% Similarity=0.369 Sum_probs=33.5
Q ss_pred hhcCCCCCCeEEEecCCCChHHHH---HHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCc
Q 011036 255 HALDPQKGERILDMCAAPGGKTTA---IASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC 313 (495)
Q Consensus 255 ~~LdpqpGerVLDmCAaPGgKT~~---iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~ 313 (495)
+...+++|++||=.. |.|+-... +|..++ .+|++++.+..+...+ +.+|.+.
T Consensus 137 ~~~~~~~g~~vlI~g-a~g~vG~~aiqlA~~~G--~~vi~~~~s~~~~~~l----~~~Ga~~ 191 (329)
T cd08294 137 EICKPKAGETVVVNG-AAGAVGSLVGQIAKIKG--CKVIGCAGSDDKVAWL----KELGFDA 191 (329)
T ss_pred HhcCCCCCCEEEEec-CccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHH----HHcCCCE
Confidence 345688999998554 34555444 444443 3799999999886544 4467643
No 316
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=85.25 E-value=7.7 Score=43.09 Aligned_cols=49 Identities=20% Similarity=0.169 Sum_probs=37.5
Q ss_pred CCCCCCeEEEecCCCChHH-HHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCC
Q 011036 258 DPQKGERILDMCAAPGGKT-TAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK 312 (495)
Q Consensus 258 dpqpGerVLDmCAaPGgKT-~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~ 312 (495)
...||++|+=++||+=|.. ...|..|+ .+|+++|++..|++ .++.+|.+
T Consensus 161 G~~pg~kVlViGaG~iGL~Ai~~Ak~lG--A~V~a~D~~~~rle----~aeslGA~ 210 (509)
T PRK09424 161 GKVPPAKVLVIGAGVAGLAAIGAAGSLG--AIVRAFDTRPEVAE----QVESMGAE 210 (509)
T ss_pred CCcCCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHH----HHHHcCCe
Confidence 4578999999999987754 44566665 37999999999875 55667875
No 317
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=85.18 E-value=18 Score=34.98 Aligned_cols=61 Identities=25% Similarity=0.280 Sum_probs=42.7
Q ss_pred CCCeEEEecCCCChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 261 KGERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 261 pGerVLDmCAaPGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
.|.+||=.+ |.|+....++..+..+| +|+.++++..++..+.+..+..|. .+..+..|...
T Consensus 9 ~~k~vlItG-a~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~-~~~~~~~D~~~ 70 (255)
T PRK07523 9 TGRRALVTG-SSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGL-SAHALAFDVTD 70 (255)
T ss_pred CCCEEEEEC-CcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCc-eEEEEEccCCC
Confidence 366777544 67889999988664344 899999999888777666655443 25667777643
No 318
>PRK07677 short chain dehydrogenase; Provisional
Probab=85.14 E-value=14 Score=35.71 Aligned_cols=60 Identities=18% Similarity=0.279 Sum_probs=41.2
Q ss_pred CCeEEEecCCCChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 262 GERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 262 GerVLDmCAaPGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
|.+||= ..|.||-+.+++..+...| .|+.+|++..++..+.+.++..+ ..+..+..|..+
T Consensus 1 ~k~~lI-tG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~ 61 (252)
T PRK07677 1 EKVVII-TGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFP-GQVLTVQMDVRN 61 (252)
T ss_pred CCEEEE-eCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEecCCC
Confidence 345664 4457778888887664444 89999999988877766665544 357777777643
No 319
>PHA01634 hypothetical protein
Probab=84.98 E-value=2.3 Score=39.06 Aligned_cols=50 Identities=18% Similarity=0.135 Sum_probs=40.6
Q ss_pred cCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHh
Q 011036 257 LDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEM 309 (495)
Q Consensus 257 LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~ 309 (495)
+|. .|.+|+|++|+-|.-+...+ +++..+|+|++.+++.....+++++.+
T Consensus 25 idv-k~KtV~dIGA~iGdSaiYF~--l~GAK~Vva~E~~~kl~k~~een~k~n 74 (156)
T PHA01634 25 LNV-YQRTIQIVGADCGSSALYFL--LRGASFVVQYEKEEKLRKKWEEVCAYF 74 (156)
T ss_pred eee-cCCEEEEecCCccchhhHHh--hcCccEEEEeccCHHHHHHHHHHhhhh
Confidence 444 38899999999998776654 467789999999999988888877755
No 320
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=84.93 E-value=23 Score=34.05 Aligned_cols=63 Identities=22% Similarity=0.164 Sum_probs=44.5
Q ss_pred CCCCCCeEEEecCCCChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHHhCCCceEEEEcch
Q 011036 258 DPQKGERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321 (495)
Q Consensus 258 dpqpGerVLDmCAaPGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da 321 (495)
++.+|.+||=.+ |.|+.+.+++..+...| +|+++|++..++..+.+.++..+...+.++..|.
T Consensus 8 ~~~~~k~vlItG-~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~ 71 (247)
T PRK08945 8 DLLKDRIILVTG-AGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDL 71 (247)
T ss_pred cccCCCEEEEeC-CCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecc
Confidence 345677777655 57888888887664445 9999999998888777666665555555666654
No 321
>PRK06101 short chain dehydrogenase; Provisional
Probab=84.85 E-value=21 Score=34.42 Aligned_cols=51 Identities=20% Similarity=0.294 Sum_probs=35.5
Q ss_pred ecCCCChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 268 MCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 268 mCAaPGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
+.-|.||.+.+++..+..+| +|++++++..++..+.+. + ..+.++..|..+
T Consensus 6 ItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~----~-~~~~~~~~D~~~ 57 (240)
T PRK06101 6 ITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDELHTQ----S-ANIFTLAFDVTD 57 (240)
T ss_pred EEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHh----c-CCCeEEEeeCCC
Confidence 56678999999998775554 899999998876544321 1 245667777643
No 322
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=84.34 E-value=20 Score=35.19 Aligned_cols=63 Identities=17% Similarity=0.147 Sum_probs=41.6
Q ss_pred CCCeEEEecCCC-ChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 261 KGERILDMCAAP-GGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 261 pGerVLDmCAaP-GgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
.|.++|=.+++. +|...++|..+...| .|+.++++......+++++++..-..+.++..|...
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d 70 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTS 70 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCC
Confidence 367888888874 899999988764444 888888764333445555555432346677777644
No 323
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=84.17 E-value=7.6 Score=44.11 Aligned_cols=45 Identities=9% Similarity=-0.022 Sum_probs=31.4
Q ss_pred CCeEEEecCCCChHHHHHHHhcC------C-----CcEEEEEeCChHHHHHHHHHH
Q 011036 262 GERILDMCAAPGGKTTAIASLLR------D-----EGEVVAVDRSHNKVMDIQKLA 306 (495)
Q Consensus 262 GerVLDmCAaPGgKT~~iA~lm~------~-----~G~ViA~D~s~~kv~~i~~~a 306 (495)
.=+|||+|=|.|--+....++.. . .=+++++|..+-..+++.+..
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~ 113 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAH 113 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHH
Confidence 35899999999987777665551 1 238999998765555554443
No 324
>PRK07831 short chain dehydrogenase; Provisional
Probab=84.17 E-value=21 Score=34.77 Aligned_cols=63 Identities=25% Similarity=0.270 Sum_probs=43.1
Q ss_pred CCCeEEEecCCCChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHH-hCCCceEEEEcchhH
Q 011036 261 KGERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAE-MGLKCITTYKLDALK 323 (495)
Q Consensus 261 pGerVLDmCAaPGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~-~gl~~i~~~~~Da~~ 323 (495)
.|.+||=.+++-.|...+++..+..+| .|+.+|++..++....+..++ +|-..+..+..|..+
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~ 80 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTS 80 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCC
Confidence 366777766653377888877664444 799999999888777665544 454557777887644
No 325
>PLN02740 Alcohol dehydrogenase-like
Probab=84.11 E-value=14 Score=38.75 Aligned_cols=51 Identities=25% Similarity=0.349 Sum_probs=36.0
Q ss_pred hcCCCCCCeEEEecCCCChHHHHHHHhcCCCc--EEEEEeCChHHHHHHHHHHHHhCCC
Q 011036 256 ALDPQKGERILDMCAAPGGKTTAIASLLRDEG--EVVAVDRSHNKVMDIQKLAAEMGLK 312 (495)
Q Consensus 256 ~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G--~ViA~D~s~~kv~~i~~~a~~~gl~ 312 (495)
..++++|++||=.++ |+-...++++.+..| .|+++|.+..|++ .++++|.+
T Consensus 193 ~~~~~~g~~VlV~G~--G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~----~a~~~Ga~ 245 (381)
T PLN02740 193 TANVQAGSSVAIFGL--GAVGLAVAEGARARGASKIIGVDINPEKFE----KGKEMGIT 245 (381)
T ss_pred ccCCCCCCEEEEECC--CHHHHHHHHHHHHCCCCcEEEEcCChHHHH----HHHHcCCc
Confidence 356789999998854 676666555444334 6999999998875 44557764
No 326
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=83.70 E-value=4.5 Score=41.95 Aligned_cols=57 Identities=18% Similarity=0.077 Sum_probs=40.2
Q ss_pred CCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHh-CCC-ceEEEEc
Q 011036 262 GERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEM-GLK-CITTYKL 319 (495)
Q Consensus 262 GerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~-gl~-~i~~~~~ 319 (495)
.-++||+++|.-..=-.|+..+. .-..+|.|++..-+.-++++.+.+ +|. .|+....
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~ 161 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQ 161 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE-
T ss_pred ceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEc
Confidence 45899999998877555655443 479999999999999999999999 886 4766554
No 327
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=83.56 E-value=13 Score=37.82 Aligned_cols=54 Identities=24% Similarity=0.332 Sum_probs=33.7
Q ss_pred hcCCCCCCeEEEecCCCChHHHHHHHhcCCC-cEEEEEeCChHHHHHHHHHHHHhCCCc
Q 011036 256 ALDPQKGERILDMCAAPGGKTTAIASLLRDE-GEVVAVDRSHNKVMDIQKLAAEMGLKC 313 (495)
Q Consensus 256 ~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~-G~ViA~D~s~~kv~~i~~~a~~~gl~~ 313 (495)
...+++|++||=.. |.|+-...++++.+.. .+|++++.+..|...+++ .+|.+.
T Consensus 146 ~~~~~~g~~VlI~G-a~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~---~lGa~~ 200 (338)
T cd08295 146 VCKPKKGETVFVSA-ASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKN---KLGFDD 200 (338)
T ss_pred hcCCCCCCEEEEec-CccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH---hcCCce
Confidence 45689999999654 4455555444433222 379999999888654432 167653
No 328
>PRK06949 short chain dehydrogenase; Provisional
Probab=83.41 E-value=22 Score=34.31 Aligned_cols=61 Identities=21% Similarity=0.281 Sum_probs=43.5
Q ss_pred CCCeEEEecCCCChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 261 KGERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 261 pGerVLDmCAaPGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
.|.+||=.+ |.|+...+++..+...| +|++++++..++..+.+..+..+. .+.++..|...
T Consensus 8 ~~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~ 69 (258)
T PRK06949 8 EGKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGG-AAHVVSLDVTD 69 (258)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEecCCC
Confidence 466777655 67889999988775555 799999999988777665544332 36677777643
No 329
>PRK06139 short chain dehydrogenase; Provisional
Probab=83.32 E-value=21 Score=36.92 Aligned_cols=60 Identities=15% Similarity=0.268 Sum_probs=43.9
Q ss_pred CCeEEEecCCCChHHHHHHHhcCCC-cEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 262 GERILDMCAAPGGKTTAIASLLRDE-GEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 262 GerVLDmCAaPGgKT~~iA~lm~~~-G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
+.+|| +.-|.||...++|..+..+ .+|+.++++..++..+.+.++..|.. +.++..|...
T Consensus 7 ~k~vl-ITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~-~~~~~~Dv~d 67 (330)
T PRK06139 7 GAVVV-ITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAE-VLVVPTDVTD 67 (330)
T ss_pred CCEEE-EcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCc-EEEEEeeCCC
Confidence 45566 5566788999998866444 48999999999998888877776643 5566777543
No 330
>PLN02827 Alcohol dehydrogenase-like
Probab=83.06 E-value=11 Score=39.61 Aligned_cols=51 Identities=22% Similarity=0.292 Sum_probs=34.9
Q ss_pred hcCCCCCCeEEEecCCCChHHHHHHHhcCCCc--EEEEEeCChHHHHHHHHHHHHhCCC
Q 011036 256 ALDPQKGERILDMCAAPGGKTTAIASLLRDEG--EVVAVDRSHNKVMDIQKLAAEMGLK 312 (495)
Q Consensus 256 ~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G--~ViA~D~s~~kv~~i~~~a~~~gl~ 312 (495)
..+.++|++||=.+ .|+-...++++.+..| .|+++|.+..|.. .++++|.+
T Consensus 188 ~~~~~~g~~VlV~G--~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~----~a~~lGa~ 240 (378)
T PLN02827 188 VADVSKGSSVVIFG--LGTVGLSVAQGAKLRGASQIIGVDINPEKAE----KAKTFGVT 240 (378)
T ss_pred hcCCCCCCEEEEEC--CCHHHHHHHHHHHHcCCCeEEEECCCHHHHH----HHHHcCCc
Confidence 35678999999884 3666655544433233 6899999988864 55667874
No 331
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=83.00 E-value=28 Score=33.15 Aligned_cols=60 Identities=25% Similarity=0.274 Sum_probs=40.6
Q ss_pred CCeEEEecCCCChHHHHHHHhcCCC-cEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 262 GERILDMCAAPGGKTTAIASLLRDE-GEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 262 GerVLDmCAaPGgKT~~iA~lm~~~-G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
+.+||=. -|.|+-..+++..+..+ .+|++++++..++..+.+..+..+ ..+.++..|...
T Consensus 6 ~~~ilIt-Gasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~ 66 (251)
T PRK12826 6 GRVALVT-GAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAG-GKARARQVDVRD 66 (251)
T ss_pred CCEEEEc-CCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CeEEEEECCCCC
Confidence 5678744 45788888888755433 489999999887766655555443 236777777643
No 332
>PRK05867 short chain dehydrogenase; Provisional
Probab=82.72 E-value=10 Score=36.71 Aligned_cols=60 Identities=18% Similarity=0.199 Sum_probs=42.1
Q ss_pred CCeEEEecCCCChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 262 GERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 262 GerVLDmCAaPGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
|.+||=.+| .||.+.+++..+..+| +|+.++++..+++.+.+..+..+ ..+.++..|..+
T Consensus 9 ~k~vlVtGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~ 69 (253)
T PRK05867 9 GKRALITGA-STGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG-GKVVPVCCDVSQ 69 (253)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC-CeEEEEEccCCC
Confidence 667775554 6778888887664444 89999999988877766665544 346677777643
No 333
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=82.67 E-value=10 Score=39.81 Aligned_cols=51 Identities=14% Similarity=0.096 Sum_probs=37.2
Q ss_pred CCCCCCeEEEecC-CCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCc
Q 011036 258 DPQKGERILDMCA-APGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC 313 (495)
Q Consensus 258 dpqpGerVLDmCA-aPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~ 313 (495)
+..||.+|-=.++ |-|..+..+|..|+ -+|+++|.+.+|-+ +.++.||.+.
T Consensus 178 g~~pG~~vgI~GlGGLGh~aVq~AKAMG--~rV~vis~~~~kke---ea~~~LGAd~ 229 (360)
T KOG0023|consen 178 GLGPGKWVGIVGLGGLGHMAVQYAKAMG--MRVTVISTSSKKKE---EAIKSLGADV 229 (360)
T ss_pred CCCCCcEEEEecCcccchHHHHHHHHhC--cEEEEEeCCchhHH---HHHHhcCcce
Confidence 4568988655444 37888999999996 58999999985543 4456678765
No 334
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=82.45 E-value=4.3 Score=41.78 Aligned_cols=41 Identities=20% Similarity=0.203 Sum_probs=26.7
Q ss_pred HHHhhcCCC-CCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChH
Q 011036 252 VTAHALDPQ-KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHN 297 (495)
Q Consensus 252 v~~~~Ldpq-pGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~ 297 (495)
.+..+++-+ .|..+||.+||-|--+. ..+--.++++|++..
T Consensus 35 ~v~qfl~~~~~gsv~~d~gCGngky~~-----~~p~~~~ig~D~c~~ 76 (293)
T KOG1331|consen 35 MVRQFLDSQPTGSVGLDVGCGNGKYLG-----VNPLCLIIGCDLCTG 76 (293)
T ss_pred HHHHHHhccCCcceeeecccCCcccCc-----CCCcceeeecchhhh
Confidence 344555544 38899999999984321 123346889999864
No 335
>PRK08324 short chain dehydrogenase; Validated
Probab=82.36 E-value=15 Score=42.01 Aligned_cols=60 Identities=22% Similarity=0.114 Sum_probs=39.0
Q ss_pred CCCeEEEecCCCChHHHHHHHhcCCC-cEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 261 KGERILDMCAAPGGKTTAIASLLRDE-GEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 261 pGerVLDmCAaPGgKT~~iA~lm~~~-G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
+|.+||= .-|.|+.+.+++..+... ..|+++|++..++..+.+..... ..+.++..|...
T Consensus 421 ~gk~vLV-TGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~--~~v~~v~~Dvtd 481 (681)
T PRK08324 421 AGKVALV-TGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP--DRALGVACDVTD 481 (681)
T ss_pred CCCEEEE-ecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc--CcEEEEEecCCC
Confidence 4677774 445688888888766433 48999999998776554332211 346677777543
No 336
>COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism]
Probab=82.35 E-value=1.6 Score=46.03 Aligned_cols=41 Identities=29% Similarity=0.519 Sum_probs=38.8
Q ss_pred CCeEEEccchHHHHH-cccccccCceeeccCCccCCCeEEEE
Q 011036 123 PKEVIVSRKCAEAVL-RGAQVYVPGVMACSSHVEKGDVVAVS 163 (495)
Q Consensus 123 ~k~ViVd~~~~eAVL-rGA~v~aPGIl~~~~~i~~Gd~VaV~ 163 (495)
.-.|+||..|.+|++ .|..+..-||...+.+|+.||.|.|.
T Consensus 279 ~G~i~iD~GA~~Al~~~gkSLLpaGV~~V~G~F~rGdvV~i~ 320 (369)
T COG0263 279 AGEITVDAGAVEALLEQGKSLLPAGVTSVEGNFSRGDVVRIR 320 (369)
T ss_pred CceEEECccHHHHHHhcCCccccccceEeeeeecCCCEEEEe
Confidence 368999999999999 89999999999999999999999988
No 337
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=82.27 E-value=35 Score=32.58 Aligned_cols=60 Identities=18% Similarity=0.188 Sum_probs=40.6
Q ss_pred CCeEEEecCCCChHHHHHHHhc-CCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 262 GERILDMCAAPGGKTTAIASLL-RDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 262 GerVLDmCAaPGgKT~~iA~lm-~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
+.+||=.+ |.|+.+.+++..+ ....+|++++++..+...+.+..+..+ ..+.++..|..+
T Consensus 7 ~~~vlVtG-~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~ 67 (239)
T PRK07666 7 GKNALITG-AGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYG-VKVVIATADVSD 67 (239)
T ss_pred CCEEEEEc-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC-CeEEEEECCCCC
Confidence 45677666 5788898888754 333489999999888776655444433 246677777643
No 338
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=82.05 E-value=22 Score=34.42 Aligned_cols=59 Identities=17% Similarity=0.168 Sum_probs=40.0
Q ss_pred CCeEEEecCCCChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchh
Q 011036 262 GERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (495)
Q Consensus 262 GerVLDmCAaPGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (495)
|.++|=.+ |.||...++|..+..+| +|+.+|++..++..+.+..+..+. .+..+..|..
T Consensus 9 ~k~~lItG-as~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~ 68 (254)
T PRK08085 9 GKNILITG-SAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGI-KAHAAPFNVT 68 (254)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCC-eEEEEecCCC
Confidence 45565444 66888999988765444 899999999888776655554442 3556666653
No 339
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=81.83 E-value=4.3 Score=40.15 Aligned_cols=60 Identities=13% Similarity=0.196 Sum_probs=41.9
Q ss_pred CeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhC-------CCceEEEEcchhH
Q 011036 263 ERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG-------LKCITTYKLDALK 323 (495)
Q Consensus 263 erVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~g-------l~~i~~~~~Da~~ 323 (495)
-.+.|++||=||....++.+..+ -.|+++++--+--.-+++..+.++ +.+|.+...++.+
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPd-tLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk 128 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPD-TLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMK 128 (249)
T ss_pred ceEEeeccCccchhhhccccCcc-ceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchh
Confidence 36899999999999999998754 688899886544444555555444 4555555555544
No 340
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=81.55 E-value=31 Score=33.08 Aligned_cols=60 Identities=22% Similarity=0.267 Sum_probs=40.7
Q ss_pred CCeEEEecCCCChHHHHHHHhcCCCc-EEEE-EeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 262 GERILDMCAAPGGKTTAIASLLRDEG-EVVA-VDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 262 GerVLDmCAaPGgKT~~iA~lm~~~G-~ViA-~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
|.+|| +.-|.|+-+.+++..+..+| +|+. .+++..+...+.+..+..+. .+.++..|...
T Consensus 4 ~~~vl-ItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~ 65 (250)
T PRK08063 4 GKVAL-VTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGR-KALAVKANVGD 65 (250)
T ss_pred CCEEE-EeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCC-eEEEEEcCCCC
Confidence 55666 45567999999988775556 6665 57888877766666555553 46777777644
No 341
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=81.48 E-value=2.8 Score=44.61 Aligned_cols=57 Identities=25% Similarity=0.311 Sum_probs=45.3
Q ss_pred HhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCC
Q 011036 254 AHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK 312 (495)
Q Consensus 254 ~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~ 312 (495)
......+||..++|+.|+-|+-+..|+..- +..++++|.+...+.+....+...+++
T Consensus 103 ~l~~~~~~~~~~~~~~~g~~~~~~~i~~f~--~~~~~Gl~~n~~e~~~~~~~~~~~~l~ 159 (364)
T KOG1269|consen 103 ALRESCFPGSKVLDVGTGVGGPSRYIAVFK--KAGVVGLDNNAYEAFRANELAKKAYLD 159 (364)
T ss_pred HHhhcCcccccccccCcCcCchhHHHHHhc--cCCccCCCcCHHHHHHHHHHHHHHHhh
Confidence 333456889999999999999999999863 357899999998887777777666654
No 342
>PRK08251 short chain dehydrogenase; Provisional
Probab=81.43 E-value=38 Score=32.44 Aligned_cols=61 Identities=15% Similarity=0.211 Sum_probs=41.4
Q ss_pred CCeEEEecCCCChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHHhC-CCceEEEEcchhH
Q 011036 262 GERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMG-LKCITTYKLDALK 323 (495)
Q Consensus 262 GerVLDmCAaPGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~~g-l~~i~~~~~Da~~ 323 (495)
+.+|| +.-|.||.+.++|..+..+| .|+.++++..++..+........ -..+.++.+|...
T Consensus 2 ~k~vl-ItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 64 (248)
T PRK08251 2 RQKIL-ITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVND 64 (248)
T ss_pred CCEEE-EECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCC
Confidence 34566 44468899999988664444 89999999998877766554432 2246777777644
No 343
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=81.10 E-value=29 Score=33.45 Aligned_cols=60 Identities=18% Similarity=0.205 Sum_probs=43.4
Q ss_pred CCeEEEecCCCChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 262 GERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 262 GerVLDmCAaPGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
|.+|| +.-|.|+-+.+++..+..+| +|+++++++.+...+.+..+..+. .+.++..|...
T Consensus 7 ~~~vl-ItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~ 67 (262)
T PRK13394 7 GKTAV-VTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGG-KAIGVAMDVTN 67 (262)
T ss_pred CCEEE-EECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCc-eEEEEECCCCC
Confidence 56677 66777899999988664444 899999999888777766665543 35667777643
No 344
>PRK12937 short chain dehydrogenase; Provisional
Probab=81.10 E-value=33 Score=32.66 Aligned_cols=60 Identities=17% Similarity=0.152 Sum_probs=36.4
Q ss_pred CCeEEEecCCCChHHHHHHHhcCCCc-EEEEEeCC-hHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 262 GERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRS-HNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 262 GerVLDmCAaPGgKT~~iA~lm~~~G-~ViA~D~s-~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
+.+|| +.-|.|+-+.++|..+..+| +|+.+.++ ..+...+.+..+..+ ..+.++..|..+
T Consensus 5 ~~~vl-ItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~ 66 (245)
T PRK12937 5 NKVAI-VTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAG-GRAIAVQADVAD 66 (245)
T ss_pred CCEEE-EeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcC-CeEEEEECCCCC
Confidence 44444 45557999999998775555 67666654 444444544444444 346677777643
No 345
>PRK08643 acetoin reductase; Validated
Probab=80.94 E-value=37 Score=32.82 Aligned_cols=59 Identities=24% Similarity=0.219 Sum_probs=41.0
Q ss_pred CeEEEecCCCChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 263 ERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 263 erVLDmCAaPGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
.+|| +.-|.||.+.+++..+..+| +|+.+|++..+...+.+.....+ ..+.++..|..+
T Consensus 3 k~~l-ItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~ 62 (256)
T PRK08643 3 KVAL-VTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDG-GKAIAVKADVSD 62 (256)
T ss_pred CEEE-EECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CeEEEEECCCCC
Confidence 3445 55677889999988764444 89999999988877766655444 246667777643
No 346
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=80.86 E-value=2.4 Score=40.03 Aligned_cols=53 Identities=8% Similarity=0.033 Sum_probs=28.5
Q ss_pred cEEEccccHHHHHhhcC-CCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCCh
Q 011036 242 EIFLQNLPSIVTAHALD-PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296 (495)
Q Consensus 242 ~i~lQ~l~S~v~~~~Ld-pqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~ 296 (495)
.+|.-+-...++-.+++ ..++.+|+=+||=+--.... .....+..++-+|.++
T Consensus 5 fwYs~~T~~~l~~~l~~~~~~~~~iaclstPsl~~~l~--~~~~~~~~~~Lle~D~ 58 (162)
T PF10237_consen 5 FWYSDETAEFLARELLDGALDDTRIACLSTPSLYEALK--KESKPRIQSFLLEYDR 58 (162)
T ss_pred cccCHHHHHHHHHHHHHhcCCCCEEEEEeCcHHHHHHH--hhcCCCccEEEEeecc
Confidence 34444444455555555 24567888887743322211 1123456777888875
No 347
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=80.46 E-value=45 Score=32.20 Aligned_cols=61 Identities=16% Similarity=0.122 Sum_probs=42.4
Q ss_pred CCCeEEEecCCCChHHHHHHHhcCC-CcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 261 KGERILDMCAAPGGKTTAIASLLRD-EGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 261 pGerVLDmCAaPGgKT~~iA~lm~~-~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
.|.+||=.+ |.|+-+.+++..+.. ...|+.++++..++..+.+..++.|. .+.++..|...
T Consensus 10 ~~k~ilItG-as~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~ 71 (256)
T PRK06124 10 AGQVALVTG-SARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGG-AAEALAFDIAD 71 (256)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEccCCC
Confidence 366777655 577888888876533 34899999998887777666665553 36677777543
No 348
>PRK06197 short chain dehydrogenase; Provisional
Probab=80.38 E-value=28 Score=35.01 Aligned_cols=62 Identities=21% Similarity=0.140 Sum_probs=41.6
Q ss_pred CCCeEEEecCCCChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHH-hCCCceEEEEcchhH
Q 011036 261 KGERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAE-MGLKCITTYKLDALK 323 (495)
Q Consensus 261 pGerVLDmCAaPGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~-~gl~~i~~~~~Da~~ 323 (495)
.|.+|| +.-|.||...++|..+...| +|+.++++..+...+.+.... .+-..+.++..|..+
T Consensus 15 ~~k~vl-ItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d 78 (306)
T PRK06197 15 SGRVAV-VTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTS 78 (306)
T ss_pred CCCEEE-EcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCC
Confidence 466777 56667999999998664444 899999998887665444332 222346677777644
No 349
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=80.24 E-value=16 Score=36.53 Aligned_cols=50 Identities=26% Similarity=0.314 Sum_probs=31.3
Q ss_pred cCCCCCCeEEEecCCC-ChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCC
Q 011036 257 LDPQKGERILDMCAAP-GGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK 312 (495)
Q Consensus 257 LdpqpGerVLDmCAaP-GgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~ 312 (495)
...++|++||...+++ |.-+.++|..++ ..|++++.+..+...+ +.+|++
T Consensus 161 ~~~~~~~~vli~g~g~vG~~~~~la~~~G--~~V~~~~~s~~~~~~~----~~~g~~ 211 (338)
T cd08254 161 GEVKPGETVLVIGLGGLGLNAVQIAKAMG--AAVIAVDIKEEKLELA----KELGAD 211 (338)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHH----HHhCCC
Confidence 3578899999953221 334444455443 4699999998876544 345654
No 350
>PRK07890 short chain dehydrogenase; Provisional
Probab=80.21 E-value=40 Score=32.46 Aligned_cols=60 Identities=15% Similarity=0.244 Sum_probs=42.2
Q ss_pred CCeEEEecCCCChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 262 GERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 262 GerVLDmCAaPGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
+.+|| +.-|.|+.+.++|..+..+| +|+.+|++..+...+.+..+..+. .+..+..|..+
T Consensus 5 ~k~vl-ItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~ 65 (258)
T PRK07890 5 GKVVV-VSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGR-RALAVPTDITD 65 (258)
T ss_pred CCEEE-EECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCC-ceEEEecCCCC
Confidence 56677 55568889999998765444 899999999887776655554442 36667777543
No 351
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=79.93 E-value=42 Score=33.48 Aligned_cols=60 Identities=23% Similarity=0.261 Sum_probs=38.8
Q ss_pred CCeEEEecCCC-ChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 262 GERILDMCAAP-GGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 262 GerVLDmCAaP-GgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
|..||=-+|+. +|....+|..+..+| .|+.++++......+.+.+++++-. .++..|..+
T Consensus 5 ~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~--~~~~~Dv~d 66 (274)
T PRK08415 5 GKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELGSD--YVYELDVSK 66 (274)
T ss_pred CcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCc--eEEEecCCC
Confidence 56777777764 688888887664444 8888899864334455555655533 456677643
No 352
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=79.69 E-value=35 Score=30.43 Aligned_cols=54 Identities=22% Similarity=0.194 Sum_probs=39.1
Q ss_pred cCCCChHHHHHHHhcCC--CcEEEEEeCC--hHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 269 CAAPGGKTTAIASLLRD--EGEVVAVDRS--HNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 269 CAaPGgKT~~iA~lm~~--~G~ViA~D~s--~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
.-|.||....+|..+-. ...|+.+.++ ..+...+.+..+..+ ..+.++..|...
T Consensus 6 tGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~-~~~~~~~~D~~~ 63 (167)
T PF00106_consen 6 TGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG-AKITFIECDLSD 63 (167)
T ss_dssp ETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT-SEEEEEESETTS
T ss_pred ECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc-cccccccccccc
Confidence 44668888888875532 3488889999 777777766666667 678899998644
No 353
>PRK05599 hypothetical protein; Provisional
Probab=79.63 E-value=33 Score=33.34 Aligned_cols=56 Identities=18% Similarity=0.223 Sum_probs=41.6
Q ss_pred ecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 268 MCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 268 mCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
++-|.+|.+.++|..+.....|+.++++..++..+.+.+++.|-..+.++.+|..+
T Consensus 5 ItGas~GIG~aia~~l~~g~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d 60 (246)
T PRK05599 5 ILGGTSDIAGEIATLLCHGEDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQD 60 (246)
T ss_pred EEeCccHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCC
Confidence 34457888888988665556899999999998887777766664456778888644
No 354
>PRK08278 short chain dehydrogenase; Provisional
Probab=79.62 E-value=24 Score=34.85 Aligned_cols=60 Identities=17% Similarity=0.186 Sum_probs=37.6
Q ss_pred CCeEEEecCCCChHHHHHHHhcCCCc-EEEEEeCChHH-------HHHHHHHHHHhCCCceEEEEcchhH
Q 011036 262 GERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNK-------VMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 262 GerVLDmCAaPGgKT~~iA~lm~~~G-~ViA~D~s~~k-------v~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
|.+|| +.-|.||...++|..+..+| +|+++++++.+ +..+.+..+..+. .+.++..|...
T Consensus 6 ~k~vl-ItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~D~~~ 73 (273)
T PRK08278 6 GKTLF-ITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGG-QALPLVGDVRD 73 (273)
T ss_pred CCEEE-EECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCC-ceEEEEecCCC
Confidence 55666 56668899999998664334 89999998653 3333333333332 36677777644
No 355
>PRK09242 tropinone reductase; Provisional
Probab=79.58 E-value=43 Score=32.43 Aligned_cols=60 Identities=22% Similarity=0.168 Sum_probs=39.6
Q ss_pred CCeEEEecCCCChHHHHHHHhcCCC-cEEEEEeCChHHHHHHHHHHHHh-CCCceEEEEcchh
Q 011036 262 GERILDMCAAPGGKTTAIASLLRDE-GEVVAVDRSHNKVMDIQKLAAEM-GLKCITTYKLDAL 322 (495)
Q Consensus 262 GerVLDmCAaPGgKT~~iA~lm~~~-G~ViA~D~s~~kv~~i~~~a~~~-gl~~i~~~~~Da~ 322 (495)
|.+||=.+| .||.+.+++..+..+ -+|++++++..++..+.+..+.. +-..+..+..|..
T Consensus 9 ~k~~lItGa-~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~ 70 (257)
T PRK09242 9 GQTALITGA-SKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVS 70 (257)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCC
Confidence 566766555 677888888766433 48999999998877665555443 1123666677754
No 356
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=79.57 E-value=18 Score=37.41 Aligned_cols=52 Identities=25% Similarity=0.314 Sum_probs=35.0
Q ss_pred cCCCCCCeEEEecCC--CChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCc
Q 011036 257 LDPQKGERILDMCAA--PGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC 313 (495)
Q Consensus 257 LdpqpGerVLDmCAa--PGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~ 313 (495)
..+++|++||=.+|+ -|..+.++|..++ .+|++++.+..|...++ +++|.+.
T Consensus 154 ~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G--~~Vi~~~~~~~k~~~~~---~~lGa~~ 207 (348)
T PLN03154 154 CSPKKGDSVFVSAASGAVGQLVGQLAKLHG--CYVVGSAGSSQKVDLLK---NKLGFDE 207 (348)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHH---HhcCCCE
Confidence 467899999877652 4445566666654 36999999998864332 2577653
No 357
>PRK08339 short chain dehydrogenase; Provisional
Probab=79.46 E-value=48 Score=32.60 Aligned_cols=61 Identities=15% Similarity=0.189 Sum_probs=41.1
Q ss_pred CCeEEEecCCCChHHHHHHHhcCCC-cEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 262 GERILDMCAAPGGKTTAIASLLRDE-GEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 262 GerVLDmCAaPGgKT~~iA~lm~~~-G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
|.++|= .-|.||.+.++|..+... .+|+.+|++..++..+.+..+...-..+.++..|...
T Consensus 8 ~k~~lI-tGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~ 69 (263)
T PRK08339 8 GKLAFT-TASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTK 69 (263)
T ss_pred CCEEEE-eCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCC
Confidence 556664 555678888888866444 4899999999888776655543321246777777644
No 358
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=79.38 E-value=39 Score=33.61 Aligned_cols=60 Identities=23% Similarity=0.195 Sum_probs=40.0
Q ss_pred CCeEEEecCCC-ChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 262 GERILDMCAAP-GGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 262 GerVLDmCAaP-GgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
|..+|=-+|+. +|....+|..+..+| .|+.++++......++++.+++|.. .++..|..+
T Consensus 7 ~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g~~--~~~~~Dv~d 68 (271)
T PRK06505 7 GKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLGSD--FVLPCDVED 68 (271)
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcCCc--eEEeCCCCC
Confidence 66788888776 488888888664444 7888898865555556665555532 356677644
No 359
>PRK12829 short chain dehydrogenase; Provisional
Probab=79.30 E-value=28 Score=33.55 Aligned_cols=60 Identities=20% Similarity=0.166 Sum_probs=40.4
Q ss_pred CCCCeEEEecCCCChHHHHHHHhcCCC-cEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 260 QKGERILDMCAAPGGKTTAIASLLRDE-GEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 260 qpGerVLDmCAaPGgKT~~iA~lm~~~-G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
-++.+||=.+| .|+.+.+++..+..+ ..|+.++++......+.+...+ . .+..+..|...
T Consensus 9 ~~~~~vlItGa-~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~--~-~~~~~~~D~~~ 69 (264)
T PRK12829 9 LDGLRVLVTGG-ASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPG--A-KVTATVADVAD 69 (264)
T ss_pred cCCCEEEEeCC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc--C-ceEEEEccCCC
Confidence 46788997766 588899998866433 4899999998776655433321 1 35666777643
No 360
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=79.27 E-value=35 Score=35.35 Aligned_cols=51 Identities=16% Similarity=0.253 Sum_probs=34.2
Q ss_pred hcCCCCCCeEEEecCCCChHHHHHHHhcCCC--cEEEEEeCChHHHHHHHHHHHHhCCC
Q 011036 256 ALDPQKGERILDMCAAPGGKTTAIASLLRDE--GEVVAVDRSHNKVMDIQKLAAEMGLK 312 (495)
Q Consensus 256 ~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~--G~ViA~D~s~~kv~~i~~~a~~~gl~ 312 (495)
...+++|++||=.++ |+-....+++.+.. ..|+++|++..|.. .++++|.+
T Consensus 181 ~~~~~~g~~VlV~G~--G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~----~~~~lGa~ 233 (368)
T cd08300 181 TAKVEPGSTVAVFGL--GAVGLAVIQGAKAAGASRIIGIDINPDKFE----LAKKFGAT 233 (368)
T ss_pred hcCCCCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEEeCCHHHHH----HHHHcCCC
Confidence 356789999998843 66555544433322 36999999999875 44557764
No 361
>PRK08557 hypothetical protein; Provisional
Probab=79.14 E-value=7.6 Score=42.06 Aligned_cols=155 Identities=17% Similarity=0.222 Sum_probs=85.5
Q ss_pred CCeEEEccchHHHHHcccccccCceeeccC--CccCCCeEEEEEcccCCcCCCCCccccccccccccCCCCCCcccCCCc
Q 011036 123 PKEVIVSRKCAEAVLRGAQVYVPGVMACSS--HVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGL 200 (495)
Q Consensus 123 ~k~ViVd~~~~eAVLrGA~v~aPGIl~~~~--~i~~Gd~VaV~~~l~~~~~~~~w~~~~~rg~~l~~~~~~~~~~~r~~l 200 (495)
.+.|+|+. +.-.|.|+.|..++|..+.+ +++.||.|.|. .+.
T Consensus 77 ~~~~~~~~--~~~~~~g~~v~~~~~~~~~~~~~~~~~~~v~~~----------------------------------~~~ 120 (417)
T PRK08557 77 EPKIKLKP--TKRRLKGKYIKEELIENPEELNEILENDYVGVE----------------------------------IGN 120 (417)
T ss_pred Cceeeecc--cccccCCccccccccccccccccCCCCCEEEEe----------------------------------cCC
Confidence 35666763 44567999999999998887 89999977766 245
Q ss_pred eEeecccccccccccccccceeeecCCcccccCCcccccc-ccEEEccccH---HHHHhhcCCCCCCeEEEecCCCChHH
Q 011036 201 YIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVLE-GEIFLQNLPS---IVTAHALDPQKGERILDMCAAPGGKT 276 (495)
Q Consensus 201 ~Vg~GialmSr~elf~~p~GIaVe~~~~v~~lp~~~~~~~-G~i~lQ~l~S---~v~~~~LdpqpGerVLDmCAaPGgKT 276 (495)
++|+|++.++...+.....|-.+ ..+.+.++.+ ..-.++.+-. .+.-.++.--+.....=+.|-+|||-
T Consensus 121 ~~gvg~~~~~~~k~~~~~~~~~~-------~~~~~~~~i~~n~~~l~~~e~~ai~~i~~~~~~~~~~~~~i~vsfSGGKD 193 (417)
T PRK08557 121 FLGVGVKKEDRIKIKDLSLKKEL-------DFEKIEDYLEKNKERIEKLEENSLSILKDYIEKYKNKGYAINASFSGGKD 193 (417)
T ss_pred EEEEEEeecceEEEEecccCCCC-------CcccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCCCcEEEEEcCCcHH
Confidence 88999998877666554332211 1111111110 0001111111 11122222112222222367788885
Q ss_pred HHHHH-hc---CCCcEEEEEeCC---hHHHHHHHHHHHHhCCCceEEEEcch
Q 011036 277 TAIAS-LL---RDEGEVVAVDRS---HNKVMDIQKLAAEMGLKCITTYKLDA 321 (495)
Q Consensus 277 ~~iA~-lm---~~~G~ViA~D~s---~~kv~~i~~~a~~~gl~~i~~~~~Da 321 (495)
+.... ++ ...-.|+-+|-- +.-..-+++.++++|++. .++..+.
T Consensus 194 S~vlL~L~~~~~~~i~vvfvDTG~efpET~e~ve~v~~~ygl~i-~v~~~~~ 244 (417)
T PRK08557 194 SSVSTLLAKEVIPDLEVIFIDTGLEYPETINYVKDFAKKYDLNL-DTLDGDN 244 (417)
T ss_pred HHHHHHHHHHhCCCCEEEEEECCCCCHHHHHHHHHHHHHhCCCE-EEEechH
Confidence 43322 22 334567888743 455667888888999864 4455543
No 362
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=78.82 E-value=4.1 Score=42.16 Aligned_cols=40 Identities=15% Similarity=0.085 Sum_probs=30.6
Q ss_pred EEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHH
Q 011036 265 ILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLA 306 (495)
Q Consensus 265 VLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a 306 (495)
|+|++||.||.+..+-.. +---|.|+|+++..+...+.|.
T Consensus 1 vidLF~G~GG~~~Gl~~a--G~~~~~a~e~~~~a~~ty~~N~ 40 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA--GFKCVFASEIDKYAQKTYEANF 40 (315)
T ss_pred CEEEecCccHHHHHHHHc--CCeEEEEEeCCHHHHHHHHHhC
Confidence 689999999999877542 2224568999999988776664
No 363
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=78.75 E-value=1.6 Score=41.34 Aligned_cols=53 Identities=13% Similarity=0.196 Sum_probs=31.6
Q ss_pred ccEEEEcCCCCCCCCc--ccchhhhhcHHHHHHhHHHHHHHHHHHHhcCCCCCEEEEE
Q 011036 426 FDRVLLDAPCSALGLR--PRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYS 481 (495)
Q Consensus 426 FDrVLlDaPCSglG~r--p~l~~~~~t~~~l~~~a~~Qrrll~~A~~lLkpGG~LVYS 481 (495)
.|.|+.|||.-..--. ...+. .......+......++..+.++|||||.++..
T Consensus 1 VdliitDPPY~~~~~~~~~~~~~---~~~~~~~y~~~~~~~~~~~~rvLk~~g~~~i~ 55 (231)
T PF01555_consen 1 VDLIITDPPYNIGKDYNNYFDYG---DNKNHEEYLEWMEEWLKECYRVLKPGGSIFIF 55 (231)
T ss_dssp EEEEEE---TSSSCS-----CSC---HCCHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCEEEECCCCCCCCCcchhhhcc---CCCCHHHHHHHHHHHHHHHHhhcCCCeeEEEE
Confidence 4899999996443220 11111 11234556667788999999999999997653
No 364
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=78.49 E-value=24 Score=37.96 Aligned_cols=43 Identities=16% Similarity=0.227 Sum_probs=30.4
Q ss_pred CCCCeEEEecCCCChHHHHHHHhcC--CCcEEEEEeCChHHHHHHHHH
Q 011036 260 QKGERILDMCAAPGGKTTAIASLLR--DEGEVVAVDRSHNKVMDIQKL 305 (495)
Q Consensus 260 qpGerVLDmCAaPGgKT~~iA~lm~--~~G~ViA~D~s~~kv~~i~~~ 305 (495)
+.-++||=++-|-| .++-++++ .-++|+-+|.++++++..+++
T Consensus 288 ~~a~~vLvlGGGDG---LAlRellkyP~~~qI~lVdLDP~miela~~~ 332 (508)
T COG4262 288 RGARSVLVLGGGDG---LALRELLKYPQVEQITLVDLDPRMIELASHA 332 (508)
T ss_pred cccceEEEEcCCch---HHHHHHHhCCCcceEEEEecCHHHHHHhhhh
Confidence 34578898887666 44444443 357999999999998876643
No 365
>PRK06181 short chain dehydrogenase; Provisional
Probab=78.30 E-value=47 Score=32.22 Aligned_cols=58 Identities=19% Similarity=0.260 Sum_probs=40.1
Q ss_pred eEEEecCCCChHHHHHHHhc-CCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 264 RILDMCAAPGGKTTAIASLL-RDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 264 rVLDmCAaPGgKT~~iA~lm-~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
+|| +.-|.|+.+.+++..+ ....+|++++++..+...+.+..+..+ .++.++..|...
T Consensus 3 ~vl-VtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~ 61 (263)
T PRK06181 3 VVI-ITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHG-GEALVVPTDVSD 61 (263)
T ss_pred EEE-EecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCC
Confidence 455 4557788999888754 334599999999988777666555544 356677777643
No 366
>PRK07063 short chain dehydrogenase; Provisional
Probab=78.02 E-value=45 Score=32.30 Aligned_cols=61 Identities=21% Similarity=0.115 Sum_probs=41.5
Q ss_pred CCeEEEecCCCChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHHhCC-CceEEEEcchhH
Q 011036 262 GERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALK 323 (495)
Q Consensus 262 GerVLDmCAaPGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~~gl-~~i~~~~~Da~~ 323 (495)
|.+||=.+ |.||.+.+++..+..+| .|+.+|++..++..+.+..+..+. ..+.++..|...
T Consensus 7 ~k~vlVtG-as~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~ 69 (260)
T PRK07063 7 GKVALVTG-AAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTD 69 (260)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCC
Confidence 56777555 46888888888664444 899999999888777666554211 246677777643
No 367
>PRK06196 oxidoreductase; Provisional
Probab=77.95 E-value=31 Score=34.97 Aligned_cols=57 Identities=14% Similarity=0.137 Sum_probs=38.2
Q ss_pred CCCeEEEecCCCChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 261 KGERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 261 pGerVLDmCAaPGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
.|.+||= .-|.||.+.+++..+...| +|++++++..+...+.+... .+.++.+|...
T Consensus 25 ~~k~vlI-TGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~-----~v~~~~~Dl~d 82 (315)
T PRK06196 25 SGKTAIV-TGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGID-----GVEVVMLDLAD 82 (315)
T ss_pred CCCEEEE-eCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh-----hCeEEEccCCC
Confidence 3566774 4467889999988664444 89999999887765443322 25667777643
No 368
>PRK07478 short chain dehydrogenase; Provisional
Probab=77.74 E-value=57 Score=31.46 Aligned_cols=59 Identities=20% Similarity=0.184 Sum_probs=41.2
Q ss_pred CCeEEEecCCCChHHHHHHHhcCCC-cEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchh
Q 011036 262 GERILDMCAAPGGKTTAIASLLRDE-GEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (495)
Q Consensus 262 GerVLDmCAaPGgKT~~iA~lm~~~-G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (495)
|.++| +.-|.||...+++..+... .+|+.++++..++..+.+..+..+. .+.++..|..
T Consensus 6 ~k~~l-ItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~ 65 (254)
T PRK07478 6 GKVAI-ITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGG-EAVALAGDVR 65 (254)
T ss_pred CCEEE-EeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEcCCC
Confidence 45666 5556688888888766433 4899999999988877666665553 3566677753
No 369
>PRK07832 short chain dehydrogenase; Provisional
Probab=77.62 E-value=37 Score=33.40 Aligned_cols=54 Identities=22% Similarity=0.181 Sum_probs=35.7
Q ss_pred cCCCChHHHHHHHhcCCC-cEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchh
Q 011036 269 CAAPGGKTTAIASLLRDE-GEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (495)
Q Consensus 269 CAaPGgKT~~iA~lm~~~-G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (495)
.-|.||.+.+++..+..+ ..|+.++++..++..+.+..+..+-..+.++..|..
T Consensus 6 tGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 60 (272)
T PRK07832 6 TGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGGTVPEHRALDIS 60 (272)
T ss_pred eCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCC
Confidence 345788888888765433 489999999888776655555444433455566653
No 370
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=77.55 E-value=60 Score=31.87 Aligned_cols=60 Identities=27% Similarity=0.230 Sum_probs=35.3
Q ss_pred CCeEEEecCCCC-hHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 262 GERILDMCAAPG-GKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 262 GerVLDmCAaPG-gKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
|..+|=-+|+.| |...++|..+..+| .|+..+++......++++.++.|. ...+..|..+
T Consensus 8 ~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~~g~--~~~~~~Dv~~ 69 (260)
T PRK06603 8 GKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEIGC--NFVSELDVTN 69 (260)
T ss_pred CcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHhcCC--ceEEEccCCC
Confidence 556676666654 77777877664444 788888875333345555555442 2245666543
No 371
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=77.53 E-value=56 Score=32.48 Aligned_cols=60 Identities=25% Similarity=0.239 Sum_probs=39.0
Q ss_pred CCeEEEecCC-CChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 262 GERILDMCAA-PGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 262 GerVLDmCAa-PGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
|..+|=.+++ .+|...++|..+..+| .|+.++++......++++++++|- ..++.+|..+
T Consensus 10 ~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~~--~~~~~~Dl~~ 71 (272)
T PRK08159 10 GKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELGA--FVAGHCDVTD 71 (272)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhcCC--ceEEecCCCC
Confidence 5667777776 4899999998775445 777777764334455566666542 3456777643
No 372
>PRK06701 short chain dehydrogenase; Provisional
Probab=77.20 E-value=45 Score=33.46 Aligned_cols=61 Identities=16% Similarity=0.151 Sum_probs=37.7
Q ss_pred CCCeEEEecCCCChHHHHHHHhcCC-CcEEEEEeCChH-HHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 261 KGERILDMCAAPGGKTTAIASLLRD-EGEVVAVDRSHN-KVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 261 pGerVLDmCAaPGgKT~~iA~lm~~-~G~ViA~D~s~~-kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
.|.+||=.+ |.|+.+.+++..+.. ..+|+.++++.. ....+.+..+..|. .+.++..|...
T Consensus 45 ~~k~iLItG-asggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~ 107 (290)
T PRK06701 45 KGKVALITG-GDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGV-KCLLIPGDVSD 107 (290)
T ss_pred CCCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCC-eEEEEEccCCC
Confidence 466777665 477788888876643 348889998753 34444444443342 36677777644
No 373
>PRK06194 hypothetical protein; Provisional
Probab=77.08 E-value=37 Score=33.50 Aligned_cols=60 Identities=17% Similarity=0.159 Sum_probs=41.7
Q ss_pred CCeEEEecCCCChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 262 GERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 262 GerVLDmCAaPGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
+.+|| +.-|.||-+.+++..+..+| +|+.+|++..++..+.+.....+. .+.++.+|...
T Consensus 6 ~k~vl-VtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~d 66 (287)
T PRK06194 6 GKVAV-ITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGA-EVLGVRTDVSD 66 (287)
T ss_pred CCEEE-EeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCC-eEEEEECCCCC
Confidence 55777 66677999999998664444 899999998877665554443332 36667787644
No 374
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=76.96 E-value=46 Score=31.41 Aligned_cols=60 Identities=23% Similarity=0.202 Sum_probs=41.3
Q ss_pred CCeEEEecCCCChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 262 GERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 262 GerVLDmCAaPGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
+.+||=.+ |.|+...+++..+..+| +|++++++..+...+....+..+. .+.++..|...
T Consensus 5 ~~~ilItG-asg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~ 65 (246)
T PRK05653 5 GKTALVTG-ASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGG-EARVLVFDVSD 65 (246)
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCC-ceEEEEccCCC
Confidence 45777444 58999999987664444 799999999888766655554442 25666677643
No 375
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=76.87 E-value=50 Score=31.98 Aligned_cols=60 Identities=20% Similarity=0.215 Sum_probs=42.3
Q ss_pred CCCeEEEecCCCChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchh
Q 011036 261 KGERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (495)
Q Consensus 261 pGerVLDmCAaPGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (495)
.|.+||=.+ |.|+-..++|..+..+| .|+.++++..+...+.+..+..+. .+..+..|..
T Consensus 11 ~~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~-~~~~~~~Dl~ 71 (259)
T PRK08213 11 SGKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGI-DALWIAADVA 71 (259)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEccCC
Confidence 366677555 67899999998775444 899999999888777666554432 3556777754
No 376
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=76.80 E-value=6.2 Score=41.73 Aligned_cols=57 Identities=18% Similarity=0.263 Sum_probs=45.5
Q ss_pred HHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCc
Q 011036 253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC 313 (495)
Q Consensus 253 ~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~ 313 (495)
+.+.++++||+.|-=.++|-=|.+.-....+.+.++|||+|++..|+ ++|+++|.+.
T Consensus 177 v~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl----~~A~~fGAT~ 233 (366)
T COG1062 177 VVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKL----ELAKKFGATH 233 (366)
T ss_pred hhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHH----HHHHhcCCce
Confidence 45778999999988887765555555566677889999999999997 5778889863
No 377
>PRK07109 short chain dehydrogenase; Provisional
Probab=76.67 E-value=41 Score=34.75 Aligned_cols=60 Identities=17% Similarity=0.145 Sum_probs=42.6
Q ss_pred CCeEEEecCCCChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 262 GERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 262 GerVLDmCAaPGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
+.+||= .-|.||...+++..+..+| +|+.++++..++..+.+.++..|. .+.++..|..+
T Consensus 8 ~k~vlI-TGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~-~~~~v~~Dv~d 68 (334)
T PRK07109 8 RQVVVI-TGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGG-EALAVVADVAD 68 (334)
T ss_pred CCEEEE-ECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEecCCC
Confidence 445554 4567888888887664444 899999999998887777776664 35667777644
No 378
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=76.28 E-value=22 Score=36.08 Aligned_cols=51 Identities=24% Similarity=0.298 Sum_probs=31.2
Q ss_pred CCCCC--CeEEEecCCCChHH---HHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCc
Q 011036 258 DPQKG--ERILDMCAAPGGKT---TAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC 313 (495)
Q Consensus 258 dpqpG--erVLDmCAaPGgKT---~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~ 313 (495)
..++| ++||=..| .|+-. .++|..++ ..+|++++.+..|...+++ ++|.+.
T Consensus 149 ~~~~g~~~~VlI~ga-~g~vG~~aiqlAk~~G-~~~Vi~~~~s~~~~~~~~~---~lGa~~ 204 (345)
T cd08293 149 HITPGANQTMVVSGA-AGACGSLAGQIGRLLG-CSRVVGICGSDEKCQLLKS---ELGFDA 204 (345)
T ss_pred cCCCCCCCEEEEECC-CcHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH---hcCCcE
Confidence 46666 89887654 34444 44555442 1279999999887654432 367654
No 379
>PRK07806 short chain dehydrogenase; Provisional
Probab=75.91 E-value=27 Score=33.44 Aligned_cols=60 Identities=18% Similarity=0.203 Sum_probs=37.2
Q ss_pred CCeEEEecCCCChHHHHHHHhcCCCc-EEEEEeCChH-HHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 262 GERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHN-KVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 262 GerVLDmCAaPGgKT~~iA~lm~~~G-~ViA~D~s~~-kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
|.+||-. -|.|+-..+++..+..+| +|++++++.. +...+.+..+..+ ..+..+..|..+
T Consensus 6 ~k~vlIt-GasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~-~~~~~~~~D~~~ 67 (248)
T PRK07806 6 GKTALVT-GSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAG-GRASAVGADLTD 67 (248)
T ss_pred CcEEEEE-CCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcC-CceEEEEcCCCC
Confidence 5677754 457888999887654444 7999988753 4444433333333 236677777644
No 380
>PRK05717 oxidoreductase; Validated
Probab=75.45 E-value=45 Score=32.32 Aligned_cols=57 Identities=26% Similarity=0.302 Sum_probs=39.1
Q ss_pred CCeEEEecCCCChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 262 GERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 262 GerVLDmCAaPGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
|.+||=. -|.|+.+.++|..+..+| +|+.+|++..+...+ ++..+ ..+.++.+|..+
T Consensus 10 ~k~vlIt-G~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~---~~~~~-~~~~~~~~Dl~~ 67 (255)
T PRK05717 10 GRVALVT-GAARGIGLGIAAWLIAEGWQVVLADLDRERGSKV---AKALG-ENAWFIAMDVAD 67 (255)
T ss_pred CCEEEEe-CCcchHHHHHHHHHHHcCCEEEEEcCCHHHHHHH---HHHcC-CceEEEEccCCC
Confidence 5677744 456889999988775444 899999998776543 33333 346677888654
No 381
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=74.66 E-value=47 Score=32.14 Aligned_cols=57 Identities=26% Similarity=0.324 Sum_probs=39.0
Q ss_pred CCeEEEecCCCChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 262 GERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 262 GerVLDmCAaPGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
+.+|| +.-|.|+.+.++|..+..+| +|+.+|++..+...+. ++.+ ..+..++.|...
T Consensus 6 ~~~vl-ItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~---~~~~-~~~~~~~~D~~~ 63 (257)
T PRK07067 6 GKVAL-LTGAASGIGEAVAERYLAEGARVVIADIKPARARLAA---LEIG-PAAIAVSLDVTR 63 (257)
T ss_pred CCEEE-EeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH---HHhC-CceEEEEccCCC
Confidence 44566 45577889999988765445 8999999988766543 3333 346777887643
No 382
>PRK05872 short chain dehydrogenase; Provisional
Probab=74.66 E-value=48 Score=33.32 Aligned_cols=58 Identities=21% Similarity=0.290 Sum_probs=37.8
Q ss_pred CCCeEEEecCCCChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHHhCC-CceEEEEcchh
Q 011036 261 KGERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDAL 322 (495)
Q Consensus 261 pGerVLDmCAaPGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~~gl-~~i~~~~~Da~ 322 (495)
.|.+||= .-|.||.+.++|..+..+| +|+.++++..++..+.+ +++- ..+..+..|..
T Consensus 8 ~gk~vlI-tGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~---~l~~~~~~~~~~~Dv~ 67 (296)
T PRK05872 8 AGKVVVV-TGAARGIGAELARRLHARGAKLALVDLEEAELAALAA---ELGGDDRVLTVVADVT 67 (296)
T ss_pred CCCEEEE-ECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH---HhcCCCcEEEEEecCC
Confidence 4667774 5567888899988775444 89999999887665443 3432 12444556653
No 383
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=74.38 E-value=3.9 Score=43.39 Aligned_cols=52 Identities=25% Similarity=0.280 Sum_probs=30.3
Q ss_pred EEccccHHHHHh------hcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCCh
Q 011036 244 FLQNLPSIVTAH------ALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296 (495)
Q Consensus 244 ~lQ~l~S~v~~~------~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~ 296 (495)
+.|+.+|+.++. .-|..| .+|||+++|||.-..++-....+--.++-++.|+
T Consensus 91 lp~~Yasv~asL~~L~~~~~dfap-qsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp 148 (484)
T COG5459 91 LPQTYASVRASLDELQKRVPDFAP-QSILDVGAGPGTGLWALNDIWPDLKSAVILEASP 148 (484)
T ss_pred hhHHHHHHHHHHHHHHHhCCCcCc-chhhccCCCCchhhhhhcccCCCchhhhhhccCH
Confidence 567777765542 123333 3599999999965555545544433455555554
No 384
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=74.33 E-value=66 Score=31.88 Aligned_cols=59 Identities=25% Similarity=0.320 Sum_probs=35.4
Q ss_pred CCeEEEecCCC-ChHHHHHHHhcCCCc-EEEEEeCChHHH-HHHHHHHHHhCCCceEEEEcchhH
Q 011036 262 GERILDMCAAP-GGKTTAIASLLRDEG-EVVAVDRSHNKV-MDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 262 GerVLDmCAaP-GgKT~~iA~lm~~~G-~ViA~D~s~~kv-~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
|.++|=-+|+. +|...++|..+..+| .|+.++++. ++ ..+.+.....+ .+.++..|..+
T Consensus 6 ~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~-~~~~~~~~~~~~~~--~~~~~~~Dl~~ 67 (262)
T PRK07984 6 GKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND-KLKGRVEEFAAQLG--SDIVLPCDVAE 67 (262)
T ss_pred CCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecch-hHHHHHHHHHhccC--CceEeecCCCC
Confidence 56777777776 488888888764444 788888873 33 23333333322 23456666543
No 385
>PRK05875 short chain dehydrogenase; Provisional
Probab=74.01 E-value=75 Score=31.07 Aligned_cols=61 Identities=16% Similarity=0.151 Sum_probs=41.4
Q ss_pred CCeEEEecCCCChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHHhC-CCceEEEEcchhH
Q 011036 262 GERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMG-LKCITTYKLDALK 323 (495)
Q Consensus 262 GerVLDmCAaPGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~~g-l~~i~~~~~Da~~ 323 (495)
+.+||=.+ |.|+.+.+++..+..+| +|++++++..+...+.+..+..+ ...+.++..|...
T Consensus 7 ~k~vlItG-asg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~ 69 (276)
T PRK05875 7 DRTYLVTG-GGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTD 69 (276)
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCC
Confidence 66777555 56889999988664444 89999999888766655444332 2346777777643
No 386
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=73.63 E-value=47 Score=31.68 Aligned_cols=59 Identities=22% Similarity=0.251 Sum_probs=38.7
Q ss_pred CCeEEEecCCCChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 262 GERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 262 GerVLDmCAaPGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
+.+||=. -|.|+-..+++..+..+| +|++++++..+...+.+..+. + ..+.++.+|...
T Consensus 5 ~~~vlIt-Gasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~-~~~~~~~~D~~~ 64 (251)
T PRK07231 5 GKVAIVT-GASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA-G-GRAIAVAADVSD 64 (251)
T ss_pred CcEEEEE-CCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-C-CeEEEEECCCCC
Confidence 4455544 456788888887654444 899999999887766554433 2 236677777644
No 387
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=73.52 E-value=7.7 Score=40.74 Aligned_cols=57 Identities=16% Similarity=0.208 Sum_probs=44.3
Q ss_pred HHHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCC
Q 011036 252 VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK 312 (495)
Q Consensus 252 v~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~ 312 (495)
.+.+..+++||..|-=.+-|.=|.+..+.....+.++||++|+++.|. +.|+++|.+
T Consensus 183 Aa~~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf----~~ak~fGaT 239 (375)
T KOG0022|consen 183 AAWNTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKF----EKAKEFGAT 239 (375)
T ss_pred hhhhhcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHH----HHHHhcCcc
Confidence 456788999999988777665555555555556788999999999998 467788886
No 388
>PRK09291 short chain dehydrogenase; Provisional
Probab=73.25 E-value=61 Score=31.14 Aligned_cols=59 Identities=29% Similarity=0.288 Sum_probs=41.7
Q ss_pred CeEEEecCCCChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 263 ERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 263 erVLDmCAaPGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
.+||= .-|.||.+.+++..+..+| .|++++++..+...+....+..+.. +.++..|...
T Consensus 3 ~~vlV-tGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~D~~~ 62 (257)
T PRK09291 3 KTILI-TGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGLA-LRVEKLDLTD 62 (257)
T ss_pred CEEEE-eCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCc-ceEEEeeCCC
Confidence 35663 4557889999988664444 8999999988887777766666543 6667777533
No 389
>PRK07062 short chain dehydrogenase; Provisional
Probab=73.22 E-value=62 Score=31.43 Aligned_cols=61 Identities=16% Similarity=0.138 Sum_probs=40.6
Q ss_pred CCeEEEecCCCChHHHHHHHhcCC-CcEEEEEeCChHHHHHHHHHHHHhC-CCceEEEEcchhH
Q 011036 262 GERILDMCAAPGGKTTAIASLLRD-EGEVVAVDRSHNKVMDIQKLAAEMG-LKCITTYKLDALK 323 (495)
Q Consensus 262 GerVLDmCAaPGgKT~~iA~lm~~-~G~ViA~D~s~~kv~~i~~~a~~~g-l~~i~~~~~Da~~ 323 (495)
|..+|=.+ |.||.+.+++..+.. ...|++++++..++..+.+...+.. -..+..+..|...
T Consensus 8 ~k~~lItG-as~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 70 (265)
T PRK07062 8 GRVAVVTG-GSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLD 70 (265)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCC
Confidence 55666555 567788888876643 3489999999988877665554432 1246667777644
No 390
>PRK06198 short chain dehydrogenase; Provisional
Probab=73.13 E-value=52 Score=31.77 Aligned_cols=59 Identities=20% Similarity=0.211 Sum_probs=39.0
Q ss_pred CCeEEEecCCCChHHHHHHHhcCCCc-E-EEEEeCChHHHHHHHHHHHHhCCCceEEEEcchh
Q 011036 262 GERILDMCAAPGGKTTAIASLLRDEG-E-VVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (495)
Q Consensus 262 GerVLDmCAaPGgKT~~iA~lm~~~G-~-ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (495)
+.+|| +.-|.|+.+.+++..+...| + |++++++..+...+...++..+. .+..+..|..
T Consensus 6 ~k~vl-ItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~ 66 (260)
T PRK06198 6 GKVAL-VTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGA-KAVFVQADLS 66 (260)
T ss_pred CcEEE-EeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCC-eEEEEEccCC
Confidence 56677 44567889999987664333 5 99999998777655544444332 3556667754
No 391
>PRK08267 short chain dehydrogenase; Provisional
Probab=73.07 E-value=42 Score=32.57 Aligned_cols=52 Identities=27% Similarity=0.201 Sum_probs=36.4
Q ss_pred cCCCChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 269 CAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 269 CAaPGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
.-|.|+.+.+++..+..+| .|++++++..++..+.+.. +-..+.++..|...
T Consensus 7 tGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~D~~~ 59 (260)
T PRK08267 7 TGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAEL---GAGNAWTGALDVTD 59 (260)
T ss_pred eCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh---cCCceEEEEecCCC
Confidence 4466888999988665555 8999999988876654432 22347777888644
No 392
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=72.88 E-value=40 Score=35.80 Aligned_cols=49 Identities=20% Similarity=0.197 Sum_probs=31.6
Q ss_pred cCCCCCCeEEEecCCCChHHHH---HHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCC
Q 011036 257 LDPQKGERILDMCAAPGGKTTA---IASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK 312 (495)
Q Consensus 257 LdpqpGerVLDmCAaPGgKT~~---iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~ 312 (495)
..+++|++||=. |.|+-... +|..++ ...|++.|++..|+. +++++|.+
T Consensus 181 ~~~~~g~~VlV~--G~G~iG~~aiqlAk~~G-a~~vi~~d~~~~r~~----~a~~~Ga~ 232 (393)
T TIGR02819 181 AGVGPGSTVYIA--GAGPVGLAAAASAQLLG-AAVVIVGDLNPARLA----QARSFGCE 232 (393)
T ss_pred cCCCCCCEEEEE--CCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHH----HHHHcCCe
Confidence 567899998874 34555444 444443 235777899887764 55667864
No 393
>PRK05876 short chain dehydrogenase; Provisional
Probab=72.51 E-value=63 Score=32.08 Aligned_cols=60 Identities=15% Similarity=0.114 Sum_probs=40.8
Q ss_pred CCeEEEecCCCChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 262 GERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 262 GerVLDmCAaPGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
|.+||= .-|.||.+.++|..+..+| .|+.+|++..++..+.+..+..|. .+.++..|..+
T Consensus 6 ~k~vlV-TGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~-~~~~~~~Dv~d 66 (275)
T PRK05876 6 GRGAVI-TGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGF-DVHGVMCDVRH 66 (275)
T ss_pred CCEEEE-eCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEeCCCCC
Confidence 556774 4456888999988765444 899999998887766554444443 35667777644
No 394
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=72.37 E-value=91 Score=29.70 Aligned_cols=60 Identities=15% Similarity=0.168 Sum_probs=41.5
Q ss_pred CCeEEEecCCCChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 262 GERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 262 GerVLDmCAaPGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
+.+||=.+ |.|+-+.+++..+..+| +|+.++++..+...+.+..+..+- .+..+..|...
T Consensus 3 ~~~ilItG-as~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~d~~~ 63 (250)
T TIGR03206 3 DKTAIVTG-GGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGG-NAQAFACDITD 63 (250)
T ss_pred CCEEEEeC-CCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCC-cEEEEEcCCCC
Confidence 55666655 46888888887664445 899999999887777665555432 36677777643
No 395
>PRK05855 short chain dehydrogenase; Validated
Probab=72.24 E-value=36 Score=36.96 Aligned_cols=60 Identities=25% Similarity=0.341 Sum_probs=43.9
Q ss_pred CCeEEEecCCCChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 262 GERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 262 GerVLDmCAaPGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
+.++| +.-|.||.+.++|..+...| +|+.++++..+...+.+..+..|. .+.++.+|..+
T Consensus 315 ~~~~l-v~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~ 375 (582)
T PRK05855 315 GKLVV-VTGAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAGA-VAHAYRVDVSD 375 (582)
T ss_pred CCEEE-EECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEcCCCC
Confidence 45566 45568899999988765444 899999999888877776666664 46777788654
No 396
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=72.07 E-value=44 Score=34.76 Aligned_cols=52 Identities=35% Similarity=0.397 Sum_probs=33.6
Q ss_pred cCCCCCCeEEEecCCCChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHHhCCCc
Q 011036 257 LDPQKGERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKC 313 (495)
Q Consensus 257 LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~~gl~~ 313 (495)
...++|++||=-+| .||-.+...+|.+..| .+++.-.+..|.. .++++|.+-
T Consensus 138 ~~l~~g~~VLV~ga-aGgVG~~aiQlAk~~G~~~v~~~~s~~k~~----~~~~lGAd~ 190 (326)
T COG0604 138 AGLKPGETVLVHGA-AGGVGSAAIQLAKALGATVVAVVSSSEKLE----LLKELGADH 190 (326)
T ss_pred cCCCCCCEEEEecC-CchHHHHHHHHHHHcCCcEEEEecCHHHHH----HHHhcCCCE
Confidence 45788999996554 4555555545444445 7777777776653 566777764
No 397
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=71.99 E-value=14 Score=35.58 Aligned_cols=49 Identities=29% Similarity=0.407 Sum_probs=35.3
Q ss_pred CChHHHHHHHhcC-CCcEEEEEeCChHHH-HHHHHHHHHhCCCceEEEEcchhH
Q 011036 272 PGGKTTAIASLLR-DEGEVVAVDRSHNKV-MDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 272 PGgKT~~iA~lm~-~~G~ViA~D~s~~kv-~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
.+|...++|..+. ....|+.+|++..++ ..+.+++++.+.. ++..|..+
T Consensus 5 s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~---~~~~D~~~ 55 (241)
T PF13561_consen 5 SSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEYGAE---VIQCDLSD 55 (241)
T ss_dssp TSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTTSE---EEESCTTS
T ss_pred CCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcCCc---eEeecCcc
Confidence 5788888888664 345899999999986 4456666766633 47777643
No 398
>PRK08589 short chain dehydrogenase; Validated
Probab=71.85 E-value=79 Score=31.15 Aligned_cols=59 Identities=22% Similarity=0.204 Sum_probs=38.2
Q ss_pred CCeEEEecCCCChHHHHHHHhcC-CCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 262 GERILDMCAAPGGKTTAIASLLR-DEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 262 GerVLDmCAaPGgKT~~iA~lm~-~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
|.+|| +.-|.||...++|..+. ....|+.++++ .++..+.+..++.+. .+.++..|...
T Consensus 6 ~k~vl-ItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~~-~~~~~~~Dl~~ 65 (272)
T PRK08589 6 NKVAV-ITGASTGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNGG-KAKAYHVDISD 65 (272)
T ss_pred CCEEE-EECCCchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcCC-eEEEEEeecCC
Confidence 55565 45566788888887553 34589999999 666655555544442 36677777643
No 399
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=71.50 E-value=63 Score=31.51 Aligned_cols=58 Identities=16% Similarity=0.131 Sum_probs=36.7
Q ss_pred CCeEEEecCCC-ChHHHHHHHhcCCC-cEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 262 GERILDMCAAP-GGKTTAIASLLRDE-GEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 262 GerVLDmCAaP-GgKT~~iA~lm~~~-G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
|.+||=-+|+. +|....+|..+... ..|+.++++. +.. +.++++.-..+.++..|..+
T Consensus 7 ~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~-~~~---~~~~~~~~~~~~~~~~Dl~~ 66 (252)
T PRK06079 7 GKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQND-RMK---KSLQKLVDEEDLLVECDVAS 66 (252)
T ss_pred CCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCch-HHH---HHHHhhccCceeEEeCCCCC
Confidence 67888778775 78888888866433 4899999874 322 22232222346677777644
No 400
>PRK06940 short chain dehydrogenase; Provisional
Probab=71.43 E-value=99 Score=30.63 Aligned_cols=50 Identities=24% Similarity=0.297 Sum_probs=35.9
Q ss_pred ChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 273 GGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 273 GgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
||...++|..+....+|+.+|++..++..+.+..+..|. .+.++..|..+
T Consensus 11 ~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d 60 (275)
T PRK06940 11 GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAGF-DVSTQEVDVSS 60 (275)
T ss_pred ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEeecCC
Confidence 789999998886445899999998887666555544443 35667777643
No 401
>PRK07454 short chain dehydrogenase; Provisional
Probab=71.33 E-value=82 Score=30.03 Aligned_cols=60 Identities=22% Similarity=0.236 Sum_probs=42.1
Q ss_pred CCeEEEecCCCChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 262 GERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 262 GerVLDmCAaPGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
+.+||=.+ |.|+.+.+++..+..+| .|++++++..+...+.+..+..+ ..+.++.+|...
T Consensus 6 ~k~vlItG-~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~ 66 (241)
T PRK07454 6 MPRALITG-ASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTG-VKAAAYSIDLSN 66 (241)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCC-CcEEEEEccCCC
Confidence 34566555 57889999988764444 89999999988877766665544 346677787644
No 402
>PRK06182 short chain dehydrogenase; Validated
Probab=71.29 E-value=54 Score=32.14 Aligned_cols=54 Identities=24% Similarity=0.323 Sum_probs=37.0
Q ss_pred CCeEEEecCCCChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 262 GERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 262 GerVLDmCAaPGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
+.+|| +.-|.||-+.+++..+..+| +|++++++..++..+.. . .+.++.+|...
T Consensus 3 ~k~vl-ItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~----~---~~~~~~~Dv~~ 57 (273)
T PRK06182 3 KKVAL-VTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLAS----L---GVHPLSLDVTD 57 (273)
T ss_pred CCEEE-EECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh----C---CCeEEEeeCCC
Confidence 44566 55678899999998764445 89999999887654321 2 25667777643
No 403
>PRK05650 short chain dehydrogenase; Provisional
Probab=71.20 E-value=81 Score=30.85 Aligned_cols=58 Identities=24% Similarity=0.197 Sum_probs=39.8
Q ss_pred eEEEecCCCChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 264 RILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 264 rVLDmCAaPGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
+|| +..|.||.+.+++..+..+| .|++++++..+...+.+..+..+- .+..+.+|...
T Consensus 2 ~vl-VtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~ 60 (270)
T PRK05650 2 RVM-ITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGG-DGFYQRCDVRD 60 (270)
T ss_pred EEE-EecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEccCCC
Confidence 344 44568889999887664444 899999999887776665555443 35667777643
No 404
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=70.38 E-value=6.6 Score=40.27 Aligned_cols=55 Identities=27% Similarity=0.300 Sum_probs=41.1
Q ss_pred CCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhHH
Q 011036 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (495)
Q Consensus 260 qpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~~ 324 (495)
.||+.-.|++|+|||.|-++.. ..-.|+|+|.-..+- ..|.-..|+-...|.++.
T Consensus 210 ~~~M~avDLGAcPGGWTyqLVk---r~m~V~aVDng~ma~-------sL~dtg~v~h~r~DGfk~ 264 (358)
T COG2933 210 APGMWAVDLGACPGGWTYQLVK---RNMRVYAVDNGPMAQ-------SLMDTGQVTHLREDGFKF 264 (358)
T ss_pred cCCceeeecccCCCccchhhhh---cceEEEEeccchhhh-------hhhcccceeeeeccCccc
Confidence 5799999999999999987654 345899999875331 123334588888898885
No 405
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=70.36 E-value=4.5 Score=35.96 Aligned_cols=23 Identities=35% Similarity=0.759 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHhcCCCCCEEEE
Q 011036 458 GKYQRRMFDQAVQLVRPGGIIVY 480 (495)
Q Consensus 458 a~~Qrrll~~A~~lLkpGG~LVY 480 (495)
-.--+++|+...++|+|||.+|.
T Consensus 20 D~Gl~~~f~~~~~~L~pGG~lil 42 (110)
T PF06859_consen 20 DEGLKRFFRRIYSLLRPGGILIL 42 (110)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEE
T ss_pred CHHHHHHHHHHHHhhCCCCEEEE
Confidence 34457899999999999999984
No 406
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=70.23 E-value=48 Score=32.59 Aligned_cols=49 Identities=27% Similarity=0.312 Sum_probs=30.5
Q ss_pred CCCCCCeEEEecC--CCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCC
Q 011036 258 DPQKGERILDMCA--APGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK 312 (495)
Q Consensus 258 dpqpGerVLDmCA--aPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~ 312 (495)
..++|++||=..| +-|--+.++|..++ ..|++++.+..+.. .++++|.+
T Consensus 139 ~~~~g~~vlV~ga~g~~g~~~~~~a~~~g--~~v~~~~~~~~~~~----~~~~~g~~ 189 (320)
T cd08243 139 GLQPGDTLLIRGGTSSVGLAALKLAKALG--ATVTATTRSPERAA----LLKELGAD 189 (320)
T ss_pred CCCCCCEEEEEcCCChHHHHHHHHHHHcC--CEEEEEeCCHHHHH----HHHhcCCc
Confidence 4678999885544 23334444555543 46999999887753 34557764
No 407
>PRK06180 short chain dehydrogenase; Provisional
Probab=69.70 E-value=87 Score=30.87 Aligned_cols=57 Identities=23% Similarity=0.191 Sum_probs=37.5
Q ss_pred CCeEEEecCCCChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 262 GERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 262 GerVLDmCAaPGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
+.+|| +.-|.||.+.+++..+..+| +|++++++..++..+.+. .+ ..+..+..|...
T Consensus 4 ~~~vl-VtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~---~~-~~~~~~~~D~~d 61 (277)
T PRK06180 4 MKTWL-ITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEAL---HP-DRALARLLDVTD 61 (277)
T ss_pred CCEEE-EecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhh---cC-CCeeEEEccCCC
Confidence 44566 45567889999988764444 899999998876554332 22 345666666543
No 408
>PRK07060 short chain dehydrogenase; Provisional
Probab=69.64 E-value=80 Score=29.98 Aligned_cols=41 Identities=29% Similarity=0.411 Sum_probs=30.5
Q ss_pred CCCeEEEecCCCChHHHHHHHhcCCCc-EEEEEeCChHHHHHH
Q 011036 261 KGERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDI 302 (495)
Q Consensus 261 pGerVLDmCAaPGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i 302 (495)
.|.+|| +.-|.|+-+.+++..+..+| +|+.++++..++..+
T Consensus 8 ~~~~~l-ItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~ 49 (245)
T PRK07060 8 SGKSVL-VTGASSGIGRACAVALAQRGARVVAAARNAAALDRL 49 (245)
T ss_pred CCCEEE-EeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 466777 56677888999988765445 899999998776543
No 409
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=69.48 E-value=50 Score=33.84 Aligned_cols=48 Identities=21% Similarity=0.309 Sum_probs=31.9
Q ss_pred CCCCeEEEecCCCChHHHHHHHhcCCCc--EEEEEeCChHHHHHHHHHHHHhCCCc
Q 011036 260 QKGERILDMCAAPGGKTTAIASLLRDEG--EVVAVDRSHNKVMDIQKLAAEMGLKC 313 (495)
Q Consensus 260 qpGerVLDmCAaPGgKT~~iA~lm~~~G--~ViA~D~s~~kv~~i~~~a~~~gl~~ 313 (495)
++|++||=.. .|+-...++++.+..| .|++++.+..+.. .++++|++.
T Consensus 176 ~~g~~vlI~g--~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~----~~~~~g~~~ 225 (361)
T cd08231 176 GAGDTVVVQG--AGPLGLYAVAAAKLAGARRVIVIDGSPERLE----LAREFGADA 225 (361)
T ss_pred CCCCEEEEEC--CCHHHHHHHHHHHHcCCCeEEEEcCCHHHHH----HHHHcCCCe
Confidence 5899998873 4776665555443323 7999999988864 345667643
No 410
>PRK07775 short chain dehydrogenase; Provisional
Probab=69.47 E-value=93 Score=30.67 Aligned_cols=58 Identities=22% Similarity=0.196 Sum_probs=39.3
Q ss_pred eEEEecCCCChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 264 RILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 264 rVLDmCAaPGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
.|| +.-|.|+...+++..+..+| +|++++++..+...+....+..+- .+.++++|...
T Consensus 12 ~vl-VtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~ 70 (274)
T PRK07775 12 PAL-VAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRADGG-EAVAFPLDVTD 70 (274)
T ss_pred EEE-EECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEECCCCC
Confidence 455 45567999999987554444 788999988777666555554442 46777777654
No 411
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=69.39 E-value=13 Score=38.77 Aligned_cols=43 Identities=16% Similarity=0.144 Sum_probs=32.6
Q ss_pred CeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHH
Q 011036 263 ERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAA 307 (495)
Q Consensus 263 erVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~ 307 (495)
-+++|+|||-||....+... +=--+.|+|+++..+...+.|..
T Consensus 4 ~~~idLFsG~GG~~lGf~~a--gf~~~~a~Eid~~a~~ty~~n~~ 46 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEA--GFEIVFANEIDPPAVATYKANFP 46 (328)
T ss_pred ceEEeeccCCchHHHHHHhc--CCeEEEEEecCHHHHHHHHHhCC
Confidence 47999999999999766542 22367799999999877766643
No 412
>PRK06172 short chain dehydrogenase; Provisional
Probab=69.32 E-value=1.1e+02 Score=29.39 Aligned_cols=60 Identities=23% Similarity=0.160 Sum_probs=43.0
Q ss_pred CCeEEEecCCCChHHHHHHHhcCCC-cEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 262 GERILDMCAAPGGKTTAIASLLRDE-GEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 262 GerVLDmCAaPGgKT~~iA~lm~~~-G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
|.+||=.+| .|+.+.+++..+..+ .+|++++++..++..+.+..+..+- .+..++.|..+
T Consensus 7 ~k~ilItGa-s~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~ 67 (253)
T PRK06172 7 GKVALVTGG-AAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGG-EALFVACDVTR 67 (253)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEcCCCC
Confidence 556776664 678888888755444 4899999999888777766666552 47778888654
No 413
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=69.23 E-value=46 Score=34.00 Aligned_cols=52 Identities=15% Similarity=0.192 Sum_probs=34.0
Q ss_pred hhcCCCCCCeEEEecCCCChHHHHHHHhcCCCc--EEEEEeCChHHHHHHHHHHHHhCCC
Q 011036 255 HALDPQKGERILDMCAAPGGKTTAIASLLRDEG--EVVAVDRSHNKVMDIQKLAAEMGLK 312 (495)
Q Consensus 255 ~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G--~ViA~D~s~~kv~~i~~~a~~~gl~ 312 (495)
...+.++|++||=.. .|+-...++++.+..| .|++++.+..+...+ +++|.+
T Consensus 166 ~~~~~~~g~~vlI~g--~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~----~~~ga~ 219 (351)
T cd08233 166 RRSGFKPGDTALVLG--AGPIGLLTILALKAAGASKIIVSEPSEARRELA----EELGAT 219 (351)
T ss_pred HhcCCCCCCEEEEEC--CCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH----HHhCCC
Confidence 345678899988773 3666555544443333 799999999887544 445654
No 414
>PRK07024 short chain dehydrogenase; Provisional
Probab=69.07 E-value=64 Score=31.30 Aligned_cols=57 Identities=16% Similarity=0.269 Sum_probs=38.7
Q ss_pred eEEEecCCCChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 264 RILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 264 rVLDmCAaPGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
+|| ++-|.||.+.+++..+..+| .|+.+|+++.++..+.+.....+ .+..+.+|..+
T Consensus 4 ~vl-ItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dl~~ 61 (257)
T PRK07024 4 KVF-ITGASSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKAA--RVSVYAADVRD 61 (257)
T ss_pred EEE-EEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccCC--eeEEEEcCCCC
Confidence 444 35568899999988765445 89999999888766544433222 56777777654
No 415
>PRK05993 short chain dehydrogenase; Provisional
Probab=69.02 E-value=65 Score=31.85 Aligned_cols=54 Identities=24% Similarity=0.403 Sum_probs=36.6
Q ss_pred CCeEEEecCCCChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 262 GERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 262 GerVLDmCAaPGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
+.+|| +.-|.||.+.++|..+..+| .|++++++..++..+.. .+ +..+.+|..+
T Consensus 4 ~k~vl-ItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~----~~---~~~~~~Dl~d 58 (277)
T PRK05993 4 KRSIL-ITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALEA----EG---LEAFQLDYAE 58 (277)
T ss_pred CCEEE-EeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----CC---ceEEEccCCC
Confidence 45666 44557999999998764444 89999999887765432 23 4566677543
No 416
>PRK07774 short chain dehydrogenase; Provisional
Probab=68.94 E-value=81 Score=30.14 Aligned_cols=60 Identities=23% Similarity=0.277 Sum_probs=40.3
Q ss_pred CCeEEEecCCCChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 262 GERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 262 GerVLDmCAaPGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
|.+|| +.-|.|+-+.+++..+..+| +|+.+|++..+...+.+..+..+ ..+..+..|...
T Consensus 6 ~k~vl-ItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~ 66 (250)
T PRK07774 6 DKVAI-VTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADG-GTAIAVQVDVSD 66 (250)
T ss_pred CCEEE-EECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEcCCCC
Confidence 55666 55578899999998664344 89999999887776655544322 235566666543
No 417
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=68.80 E-value=91 Score=30.51 Aligned_cols=61 Identities=20% Similarity=0.250 Sum_probs=38.2
Q ss_pred CCCeEEEecCC-CChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 261 KGERILDMCAA-PGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 261 pGerVLDmCAa-PGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
.|.++|=.+|+ .+|...++|..+..+| .|+.+|++.+ ...+.+.+++++- .+.++..|..+
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~-~~~~~~~~~~~~~-~~~~~~~Dv~~ 68 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRA-LRLTERIAKRLPE-PAPVLELDVTN 68 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccc-hhHHHHHHHhcCC-CCcEEeCCCCC
Confidence 36788888885 6899999988664444 8888888742 1223344444432 34566677643
No 418
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=68.30 E-value=20 Score=39.55 Aligned_cols=57 Identities=14% Similarity=0.133 Sum_probs=33.1
Q ss_pred eEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 264 RILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 264 rVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
++|=++||-=-.+.++-. .+--.|+-+|.|+-.++.++..-+ ..-.-++...+|...
T Consensus 51 ~~l~lGCGNS~l~e~ly~--~G~~dI~~iD~S~V~V~~m~~~~~-~~~~~~~~~~~d~~~ 107 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYK--NGFEDITNIDSSSVVVAAMQVRNA-KERPEMQMVEMDMDQ 107 (482)
T ss_pred eeEeecCCCCHHHHHHHh--cCCCCceeccccHHHHHHHHhccc-cCCcceEEEEecchh
Confidence 788887776544443322 122269999999999877644322 222335555555533
No 419
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=67.85 E-value=51 Score=31.99 Aligned_cols=60 Identities=17% Similarity=0.258 Sum_probs=39.7
Q ss_pred CCCeEEEecCCCChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 261 KGERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 261 pGerVLDmCAaPGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
.|.+||=.+| .||.+.+++..+...| .|+.++++ .+...+.+.....+ ..+.++..|...
T Consensus 14 ~~k~vlItGa-s~gIG~~ia~~l~~~G~~v~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~D~~~ 74 (258)
T PRK06935 14 DGKVAIVTGG-NTGLGQGYAVALAKAGADIIITTHG-TNWDETRRLIEKEG-RKVTFVQVDLTK 74 (258)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCC-cHHHHHHHHHHhcC-CceEEEEcCCCC
Confidence 3666765555 6778888888764444 78889988 55566666555554 346777777643
No 420
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=67.85 E-value=99 Score=29.49 Aligned_cols=54 Identities=26% Similarity=0.240 Sum_probs=36.9
Q ss_pred cCCCChHHHHHHHhcCCC-cEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 269 CAAPGGKTTAIASLLRDE-GEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 269 CAaPGgKT~~iA~lm~~~-G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
.-|.|+-..+++..+..+ .+|++++++..+...+.+..+..+ ..+.++..|...
T Consensus 7 tGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~ 61 (255)
T TIGR01963 7 TGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAG-GSVIYLVADVTK 61 (255)
T ss_pred cCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CceEEEECCCCC
Confidence 346788888888755333 489999999888776665554443 246777777644
No 421
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=67.70 E-value=25 Score=36.76 Aligned_cols=63 Identities=8% Similarity=0.154 Sum_probs=45.4
Q ss_pred CCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhC--CC--ceEEEEcchhHHH
Q 011036 262 GERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG--LK--CITTYKLDALKAV 325 (495)
Q Consensus 262 GerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~g--l~--~i~~~~~Da~~~~ 325 (495)
-.+||=++-|-||..-..+.. .--+.|.-+|++.+-++.-++....|- .+ .|...-+|.+..+
T Consensus 122 pkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl 188 (337)
T KOG1562|consen 122 PKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFL 188 (337)
T ss_pred CCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHH
Confidence 357999999999987665543 445789999999988887777777653 22 3666677776654
No 422
>PRK08862 short chain dehydrogenase; Provisional
Probab=67.33 E-value=97 Score=29.95 Aligned_cols=59 Identities=14% Similarity=0.228 Sum_probs=39.8
Q ss_pred CCeEEEecCCCChHHHHHHHhc-CCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchh
Q 011036 262 GERILDMCAAPGGKTTAIASLL-RDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (495)
Q Consensus 262 GerVLDmCAaPGgKT~~iA~lm-~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (495)
|.++| +..|.+|....+|..+ .....|+.++++.+++..+.+..++.+.. +..+..|..
T Consensus 5 ~k~~l-VtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~-~~~~~~D~~ 64 (227)
T PRK08862 5 SSIIL-ITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDN-VYSFQLKDF 64 (227)
T ss_pred CeEEE-EECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCC-eEEEEccCC
Confidence 55666 4455567777777655 34458999999999988877766665533 556666653
No 423
>PRK07985 oxidoreductase; Provisional
Probab=67.29 E-value=1.2e+02 Score=30.54 Aligned_cols=61 Identities=21% Similarity=0.164 Sum_probs=38.2
Q ss_pred CCCeEEEecCCCChHHHHHHHhcCCCc-EEEEEeCCh--HHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 261 KGERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSH--NKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 261 pGerVLDmCAaPGgKT~~iA~lm~~~G-~ViA~D~s~--~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
.|.++|=.+ |.||...++|..+..+| +|+.++++. .+...+.+..++.|- .+.++..|...
T Consensus 48 ~~k~vlITG-as~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~ 111 (294)
T PRK07985 48 KDRKALVTG-GDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGR-KAVLLPGDLSD 111 (294)
T ss_pred CCCEEEEEC-CCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCC-eEEEEEccCCC
Confidence 456777666 46888888888664444 788877653 345555555555443 35567777643
No 424
>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]. The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification
Probab=67.21 E-value=8.8 Score=33.29 Aligned_cols=51 Identities=14% Similarity=0.246 Sum_probs=34.8
Q ss_pred CccEEEEcCCCCCCCCcccchhhhhcHHHHHHhHHHHHHHHHHHHhcCCCCCEEEEEeC
Q 011036 425 SFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTC 483 (495)
Q Consensus 425 sFDrVLlDaPCSglG~rp~l~~~~~t~~~l~~~a~~Qrrll~~A~~lLkpGG~LVYSTC 483 (495)
.||.|+-+||.....-...... ...+..++..-++..|.+|| +|.+.|-|-
T Consensus 2 kFD~VIGNPPY~~~~~~~~~~~------~~~~~~dlY~~Fie~~~~ll--~G~~~~I~P 52 (106)
T PF07669_consen 2 KFDVVIGNPPYIKIKSLSKKKK------KKKKKSDLYILFIEKSLNLL--NGYLSFITP 52 (106)
T ss_pred CcCEEEECCCChhhccccchhh------cccccCcHHHHHHHHHHHHh--CCeEEEEeC
Confidence 5999999999877653211111 00114456678999999999 899988764
No 425
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=66.81 E-value=1.1e+02 Score=29.89 Aligned_cols=61 Identities=25% Similarity=0.165 Sum_probs=40.8
Q ss_pred CCCeEEEecCCCChHHHHHHHhc-CCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 261 KGERILDMCAAPGGKTTAIASLL-RDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 261 pGerVLDmCAaPGgKT~~iA~lm-~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
.|.+||=.++ .|+-+.+++..+ ....+|+.++++..++..+.+..+..|. .+.++.+|..+
T Consensus 9 ~~k~~lItGa-~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~ 70 (265)
T PRK07097 9 KGKIALITGA-SYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGI-EAHGYVCDVTD 70 (265)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEcCCCC
Confidence 3555665444 467777777644 3445899999999988877666665443 36677888654
No 426
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=66.76 E-value=1.4e+02 Score=34.43 Aligned_cols=85 Identities=19% Similarity=0.180 Sum_probs=52.0
Q ss_pred cccccEEEccccHHHHHhh-cCCC----CCCeEEEecCCCChHHHHHHHhcCCC-cEEEEEeCChHHHHHHHHHHH-HhC
Q 011036 238 VLEGEIFLQNLPSIVTAHA-LDPQ----KGERILDMCAAPGGKTTAIASLLRDE-GEVVAVDRSHNKVMDIQKLAA-EMG 310 (495)
Q Consensus 238 ~~~G~i~lQ~l~S~v~~~~-Ldpq----pGerVLDmCAaPGgKT~~iA~lm~~~-G~ViA~D~s~~kv~~i~~~a~-~~g 310 (495)
+-+.+.|....++.--+.+ .-|+ .|.+|| +.-|.||.+.++|..+... .+|+++|++..++..+.+... ..+
T Consensus 385 ~~~~~~f~~eyw~~e~~kl~~~~~~~~l~gkvvL-VTGasggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~~~~~l~~~~~ 463 (676)
T TIGR02632 385 LPEQEAFDIEYWPLEEAKLRRMPKEKTLARRVAF-VTGGAGGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEINGQFG 463 (676)
T ss_pred CchhhccchhhhhhhHHhhccCCCCcCCCCCEEE-EeCCCcHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhhcC
Confidence 3455666666665443333 2122 255666 5666789999998866444 489999999888766544333 223
Q ss_pred CCceEEEEcchhH
Q 011036 311 LKCITTYKLDALK 323 (495)
Q Consensus 311 l~~i~~~~~Da~~ 323 (495)
-..+..+..|...
T Consensus 464 ~~~~~~v~~Dvtd 476 (676)
T TIGR02632 464 AGRAVALKMDVTD 476 (676)
T ss_pred CCcEEEEECCCCC
Confidence 3346667777643
No 427
>PRK06128 oxidoreductase; Provisional
Probab=66.23 E-value=1.3e+02 Score=30.19 Aligned_cols=61 Identities=18% Similarity=0.165 Sum_probs=36.7
Q ss_pred CCCeEEEecCCCChHHHHHHHhcCCCc-EEEEEeCCh--HHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 261 KGERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSH--NKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 261 pGerVLDmCAaPGgKT~~iA~lm~~~G-~ViA~D~s~--~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
.|.+||=.+ |.||...++|..+...| +|+..+++. .....+.+.++..|. .+.++..|...
T Consensus 54 ~~k~vlITG-as~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~ 117 (300)
T PRK06128 54 QGRKALITG-ADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGR-KAVALPGDLKD 117 (300)
T ss_pred CCCEEEEec-CCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCC-eEEEEecCCCC
Confidence 366777655 57888889888764444 677766653 234444445554443 35566777643
No 428
>PRK06482 short chain dehydrogenase; Provisional
Probab=66.06 E-value=62 Score=31.71 Aligned_cols=55 Identities=20% Similarity=0.275 Sum_probs=37.7
Q ss_pred eEEEecCCCChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 264 RILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 264 rVLDmCAaPGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
+|| +.-|.|+.+.+++..+..+| .|++++++..++..+++. .+ ..+.+++.|...
T Consensus 4 ~vl-VtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~---~~-~~~~~~~~D~~~ 59 (276)
T PRK06482 4 TWF-ITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKAR---YG-DRLWVLQLDVTD 59 (276)
T ss_pred EEE-EecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh---cc-CceEEEEccCCC
Confidence 455 45668999999988664444 899999998776655443 22 246777777644
No 429
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=65.95 E-value=96 Score=29.69 Aligned_cols=54 Identities=24% Similarity=0.299 Sum_probs=37.1
Q ss_pred cCCCChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 269 CAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 269 CAaPGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
.-|.|+-+.+++..+...| +|+.++++..++..+.+.....+. .+.++.+|...
T Consensus 6 tG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~ 60 (254)
T TIGR02415 6 TGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGG-KAVAYKLDVSD 60 (254)
T ss_pred eCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEcCCCC
Confidence 3467888888887663334 899999998877766655555443 46777777643
No 430
>PRK09072 short chain dehydrogenase; Provisional
Probab=65.59 E-value=94 Score=30.17 Aligned_cols=58 Identities=22% Similarity=0.223 Sum_probs=38.0
Q ss_pred CCeEEEecCCCChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchh
Q 011036 262 GERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (495)
Q Consensus 262 GerVLDmCAaPGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (495)
|.+||= .-|.|+.+.+++..+..+| +|++++++..++..+.+.. +.+ ..+.++..|..
T Consensus 5 ~~~vlI-tG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~-~~~~~~~~D~~ 63 (263)
T PRK09072 5 DKRVLL-TGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARL-PYP-GRHRWVVADLT 63 (263)
T ss_pred CCEEEE-ECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-hcC-CceEEEEccCC
Confidence 445554 4556888888888664444 8999999988877665443 222 24666777753
No 431
>PRK06500 short chain dehydrogenase; Provisional
Probab=65.33 E-value=1.2e+02 Score=28.90 Aligned_cols=55 Identities=24% Similarity=0.303 Sum_probs=35.7
Q ss_pred CCeEEEecCCCChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHHhCCCceEEEEcch
Q 011036 262 GERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321 (495)
Q Consensus 262 GerVLDmCAaPGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da 321 (495)
|.+|| +.-|.|+-..+++..+..+| +|++++++..++..+ .++++. .+..+..|.
T Consensus 6 ~k~vl-ItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~---~~~~~~-~~~~~~~D~ 61 (249)
T PRK06500 6 GKTAL-ITGGTSGIGLETARQFLAEGARVAITGRDPASLEAA---RAELGE-SALVIRADA 61 (249)
T ss_pred CCEEE-EeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHH---HHHhCC-ceEEEEecC
Confidence 44444 45667889999988665445 899999997766543 334443 345566664
No 432
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=65.30 E-value=59 Score=32.89 Aligned_cols=52 Identities=21% Similarity=0.249 Sum_probs=31.6
Q ss_pred HhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCc--EEEEEeCChHHHHHHHHHHHHhCC
Q 011036 254 AHALDPQKGERILDMCAAPGGKTTAIASLLRDEG--EVVAVDRSHNKVMDIQKLAAEMGL 311 (495)
Q Consensus 254 ~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G--~ViA~D~s~~kv~~i~~~a~~~gl 311 (495)
.+.+.+++|++||-.. .|+-...++++.+..| .|++++.+..+...+ +.+|.
T Consensus 152 l~~~~~~~~~~vlI~g--~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l----~~~g~ 205 (343)
T cd08236 152 VRLAGITLGDTVVVIG--AGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVA----RELGA 205 (343)
T ss_pred HHhcCCCCCCEEEEEC--CCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHH----HHcCC
Confidence 3455678999999983 3554444333333233 489999887765433 34555
No 433
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=65.12 E-value=1.4e+02 Score=29.02 Aligned_cols=61 Identities=16% Similarity=0.254 Sum_probs=37.9
Q ss_pred CCCeEEEecCCC-ChHHHHHHHhcCCCc-EEEEEeCC-----------hHHHHHHHHHHHHhCCCceEEEEcchh
Q 011036 261 KGERILDMCAAP-GGKTTAIASLLRDEG-EVVAVDRS-----------HNKVMDIQKLAAEMGLKCITTYKLDAL 322 (495)
Q Consensus 261 pGerVLDmCAaP-GgKT~~iA~lm~~~G-~ViA~D~s-----------~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (495)
.|.+||=.+|.. ||.+.++|..+...| .|+..+++ ..+...+.+.+++.|. .+.++..|..
T Consensus 5 ~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~D~~ 78 (256)
T PRK12859 5 KNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGV-KVSSMELDLT 78 (256)
T ss_pred CCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCC-eEEEEEcCCC
Confidence 477888888874 788888887664444 78776543 2333344444555553 3667777753
No 434
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.95 E-value=14 Score=35.37 Aligned_cols=49 Identities=18% Similarity=0.297 Sum_probs=31.9
Q ss_pred CCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHh
Q 011036 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEM 309 (495)
Q Consensus 261 pGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~ 309 (495)
.|.+||.+++|=-|.+..|...-.+..+|.-.|-+...|..+++..-.+
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n 77 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSN 77 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcc
Confidence 4788999876533322222221235568999999999998887776554
No 435
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=64.92 E-value=92 Score=30.02 Aligned_cols=51 Identities=22% Similarity=0.384 Sum_probs=34.7
Q ss_pred cCCCChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 269 CAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 269 CAaPGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
.-|.||.+.++|..+..+| +|++++++..++..+.. .++. .+..+.+|..+
T Consensus 6 tGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~-~~~~~~~Dl~~ 57 (248)
T PRK10538 6 TGATAGFGECITRRFIQQGHKVIATGRRQERLQELKD---ELGD-NLYIAQLDVRN 57 (248)
T ss_pred ECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH---Hhcc-ceEEEEecCCC
Confidence 4567888999988764444 89999999887665543 2332 36667777644
No 436
>PRK09135 pteridine reductase; Provisional
Probab=64.37 E-value=1.3e+02 Score=28.45 Aligned_cols=62 Identities=13% Similarity=0.008 Sum_probs=40.0
Q ss_pred CCCeEEEecCCCChHHHHHHHhcCCC-cEEEEEeCC-hHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 261 KGERILDMCAAPGGKTTAIASLLRDE-GEVVAVDRS-HNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 261 pGerVLDmCAaPGgKT~~iA~lm~~~-G~ViA~D~s-~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
.+.+||=.+| .|+-+.+++..+..+ -+|++++++ ..+...+.+.....+-..+.++..|..+
T Consensus 5 ~~~~vlItGa-~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~ 68 (249)
T PRK09135 5 SAKVALITGG-ARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNALRPGSAAALQADLLD 68 (249)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCC
Confidence 3567887775 688999998866444 489999986 4445444444443333456777777643
No 437
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=63.62 E-value=69 Score=32.45 Aligned_cols=51 Identities=16% Similarity=0.195 Sum_probs=32.9
Q ss_pred hcCCCCCCeEEEecCCCChHHHHHHHhcCCCc--EEEEEeCChHHHHHHHHHHHHhCCC
Q 011036 256 ALDPQKGERILDMCAAPGGKTTAIASLLRDEG--EVVAVDRSHNKVMDIQKLAAEMGLK 312 (495)
Q Consensus 256 ~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G--~ViA~D~s~~kv~~i~~~a~~~gl~ 312 (495)
....++|++||=. |.|+-...++++.+..| .|+++|.+..|.. .++++|.+
T Consensus 161 ~~~~~~g~~vlI~--g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~----~~~~~g~~ 213 (345)
T cd08286 161 NGKVKPGDTVAIV--GAGPVGLAALLTAQLYSPSKIIMVDLDDNRLE----VAKKLGAT 213 (345)
T ss_pred hcCCCCCCEEEEE--CCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHH----HHHHhCCC
Confidence 3456889998874 34666555544444344 6889999988854 44456764
No 438
>PRK05693 short chain dehydrogenase; Provisional
Probab=63.49 E-value=1e+02 Score=30.22 Aligned_cols=48 Identities=27% Similarity=0.392 Sum_probs=33.0
Q ss_pred ecCCCChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchh
Q 011036 268 MCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (495)
Q Consensus 268 mCAaPGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (495)
+.-|.||.+.+++..+..+| .|++++++..++..+.. .+ +..+..|..
T Consensus 6 ItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~----~~---~~~~~~Dl~ 54 (274)
T PRK05693 6 ITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALAA----AG---FTAVQLDVN 54 (274)
T ss_pred EecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----CC---CeEEEeeCC
Confidence 45678999999998764444 89999999877654432 22 445666653
No 439
>PRK06841 short chain dehydrogenase; Provisional
Probab=63.38 E-value=1e+02 Score=29.56 Aligned_cols=57 Identities=25% Similarity=0.224 Sum_probs=35.4
Q ss_pred CCeEEEecCCCChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 262 GERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 262 GerVLDmCAaPGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
|.+||=. -|.|+.+.++|..+..+| +|+.++++...... +....-..+..+..|..+
T Consensus 15 ~k~vlIt-Gas~~IG~~la~~l~~~G~~Vi~~~r~~~~~~~----~~~~~~~~~~~~~~Dl~~ 72 (255)
T PRK06841 15 GKVAVVT-GGASGIGHAIAELFAAKGARVALLDRSEDVAEV----AAQLLGGNAKGLVCDVSD 72 (255)
T ss_pred CCEEEEE-CCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHH----HHHhhCCceEEEEecCCC
Confidence 5677744 456788899887664444 89999998764322 222222335567777643
No 440
>PRK08265 short chain dehydrogenase; Provisional
Probab=63.03 E-value=1.3e+02 Score=29.36 Aligned_cols=57 Identities=21% Similarity=0.183 Sum_probs=37.2
Q ss_pred CCeEEEecCCCChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 262 GERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 262 GerVLDmCAaPGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
|.+||=.+ |.||...++|..+..+| .|+.+|++..++..+ +++.+ ..+.++..|...
T Consensus 6 ~k~vlItG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~---~~~~~-~~~~~~~~Dl~~ 63 (261)
T PRK08265 6 GKVAIVTG-GATLIGAAVARALVAAGARVAIVDIDADNGAAV---AASLG-ERARFIATDITD 63 (261)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH---HHHhC-CeeEEEEecCCC
Confidence 45666444 56788888887664444 899999998766544 33444 235667777643
No 441
>PRK06484 short chain dehydrogenase; Validated
Probab=63.00 E-value=1e+02 Score=33.48 Aligned_cols=57 Identities=14% Similarity=0.245 Sum_probs=37.9
Q ss_pred CCCeEEEecCCCChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchh
Q 011036 261 KGERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (495)
Q Consensus 261 pGerVLDmCAaPGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (495)
.|..+| +.-|.||...++|..+..+| .|+.++++..++..+. ++.+-. +..+..|..
T Consensus 268 ~~k~~l-ItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~---~~~~~~-~~~~~~D~~ 325 (520)
T PRK06484 268 SPRVVA-ITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLA---EALGDE-HLSVQADIT 325 (520)
T ss_pred CCCEEE-EECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH---HHhCCc-eeEEEccCC
Confidence 466666 55667889999988664444 8999999988776554 334432 345666653
No 442
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=62.94 E-value=94 Score=31.70 Aligned_cols=51 Identities=27% Similarity=0.312 Sum_probs=33.0
Q ss_pred hhcCCCCCCeEEEecCCCChHHH---HHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCC
Q 011036 255 HALDPQKGERILDMCAAPGGKTT---AIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK 312 (495)
Q Consensus 255 ~~LdpqpGerVLDmCAaPGgKT~---~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~ 312 (495)
.....++|++||=.. .|+-.. ++|..++ ...|+++|.+..|. +.++++|.+
T Consensus 160 ~~~~~~~g~~vlI~g--~g~iG~~~~~lak~~G-~~~v~~~~~~~~~~----~~~~~~g~~ 213 (351)
T cd08285 160 ELANIKLGDTVAVFG--IGPVGLMAVAGARLRG-AGRIIAVGSRPNRV----ELAKEYGAT 213 (351)
T ss_pred HccCCCCCCEEEEEC--CCHHHHHHHHHHHHcC-CCeEEEEeCCHHHH----HHHHHcCCc
Confidence 345578899999874 354444 4444442 34699999998886 445567764
No 443
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=62.79 E-value=1.2e+02 Score=28.98 Aligned_cols=59 Identities=24% Similarity=0.308 Sum_probs=38.5
Q ss_pred CCCeEEEecCCCChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 261 KGERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 261 pGerVLDmCAaPGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
.|.+||=.+| .||...++|..+-.+| .|+.++++.. ..+.+..++.+ ..+.++..|..+
T Consensus 4 ~~k~vlItGa-s~gIG~~ia~~l~~~G~~vi~~~r~~~--~~~~~~~~~~~-~~~~~~~~D~~~ 63 (248)
T TIGR01832 4 EGKVALVTGA-NTGLGQGIAVGLAEAGADIVGAGRSEP--SETQQQVEALG-RRFLSLTADLSD 63 (248)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEcCchH--HHHHHHHHhcC-CceEEEECCCCC
Confidence 3666775555 5778888888775555 8999998752 33444444444 246777777654
No 444
>PRK06138 short chain dehydrogenase; Provisional
Probab=62.23 E-value=1.1e+02 Score=29.19 Aligned_cols=59 Identities=25% Similarity=0.238 Sum_probs=38.0
Q ss_pred CCeEEEecCCCChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 262 GERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 262 GerVLDmCAaPGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
|.+||= ..|.|+.+.+++..+..+| +|++++++..+.....+... .+ ..+..+.+|...
T Consensus 5 ~k~~lI-tG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~~-~~~~~~~~D~~~ 64 (252)
T PRK06138 5 GRVAIV-TGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA-AG-GRAFARQGDVGS 64 (252)
T ss_pred CcEEEE-eCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh-cC-CeEEEEEcCCCC
Confidence 445554 4456889999988654444 89999999877665544433 22 236677777643
No 445
>PRK12742 oxidoreductase; Provisional
Probab=62.01 E-value=1.4e+02 Score=28.12 Aligned_cols=54 Identities=26% Similarity=0.373 Sum_probs=33.9
Q ss_pred CCCeEEEecCCCChHHHHHHHhcCCCc-EEEEEeC-ChHHHHHHHHHHHHhCCCceEEEEcch
Q 011036 261 KGERILDMCAAPGGKTTAIASLLRDEG-EVVAVDR-SHNKVMDIQKLAAEMGLKCITTYKLDA 321 (495)
Q Consensus 261 pGerVLDmCAaPGgKT~~iA~lm~~~G-~ViA~D~-s~~kv~~i~~~a~~~gl~~i~~~~~Da 321 (495)
.|.+|| +.-|.||.+.+++..+..+| +|+.+++ +..++. ++.++++. .++..|.
T Consensus 5 ~~k~vl-ItGasggIG~~~a~~l~~~G~~v~~~~~~~~~~~~---~l~~~~~~---~~~~~D~ 60 (237)
T PRK12742 5 TGKKVL-VLGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAE---RLAQETGA---TAVQTDS 60 (237)
T ss_pred CCCEEE-EECCCChHHHHHHHHHHHCCCEEEEecCCCHHHHH---HHHHHhCC---eEEecCC
Confidence 366777 55678999999998775555 7877765 444443 33444442 3455554
No 446
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=61.96 E-value=83 Score=30.59 Aligned_cols=59 Identities=15% Similarity=0.183 Sum_probs=37.0
Q ss_pred CCCeEEEecCCCChHHHHHHHhcCCC-cEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 261 KGERILDMCAAPGGKTTAIASLLRDE-GEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 261 pGerVLDmCAaPGgKT~~iA~lm~~~-G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
.|.+||- .-|.||...++|..+... .+|++++++.. ..+.+..+..+. .+.++..|..+
T Consensus 7 ~~k~~lI-tGas~gIG~aia~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~~-~~~~~~~Dl~~ 66 (251)
T PRK12481 7 NGKVAII-TGCNTGLGQGMAIGLAKAGADIVGVGVAEA--PETQAQVEALGR-KFHFITADLIQ 66 (251)
T ss_pred CCCEEEE-eCCCchHHHHHHHHHHHCCCEEEEecCchH--HHHHHHHHHcCC-eEEEEEeCCCC
Confidence 3667774 446788999998866444 48888888643 333344444442 36677777644
No 447
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=61.75 E-value=78 Score=32.77 Aligned_cols=51 Identities=20% Similarity=0.296 Sum_probs=33.8
Q ss_pred hcCCCCCCeEEEecCCCChHHHHHHHhcCCCc--EEEEEeCChHHHHHHHHHHHHhCCC
Q 011036 256 ALDPQKGERILDMCAAPGGKTTAIASLLRDEG--EVVAVDRSHNKVMDIQKLAAEMGLK 312 (495)
Q Consensus 256 ~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G--~ViA~D~s~~kv~~i~~~a~~~gl~ 312 (495)
..++++|++||=. |+|+-...++++.+..| .|++++++..|... ++++|.+
T Consensus 178 ~~~~~~g~~vlI~--g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~----~~~~g~~ 230 (365)
T cd05279 178 TAKVTPGSTCAVF--GLGGVGLSVIMGCKAAGASRIIAVDINKDKFEK----AKQLGAT 230 (365)
T ss_pred ccCCCCCCEEEEE--CCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHH----HHHhCCC
Confidence 4567899999886 34666655544443333 58899999888644 4556764
No 448
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=61.64 E-value=74 Score=32.90 Aligned_cols=50 Identities=28% Similarity=0.381 Sum_probs=32.5
Q ss_pred hcCCCCCCeEEEecCCCChHHH---HHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCC
Q 011036 256 ALDPQKGERILDMCAAPGGKTT---AIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK 312 (495)
Q Consensus 256 ~LdpqpGerVLDmCAaPGgKT~---~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~ 312 (495)
..++++|++||=.++ |+-.. ++|..++ ...|+++|.+..|.. .++++|.+
T Consensus 181 ~~~~~~g~~vlI~g~--g~vG~~~~~la~~~G-~~~v~~~~~~~~k~~----~~~~~g~~ 233 (365)
T cd08278 181 VLKPRPGSSIAVFGA--GAVGLAAVMAAKIAG-CTTIIAVDIVDSRLE----LAKELGAT 233 (365)
T ss_pred hcCCCCCCEEEEECC--CHHHHHHHHHHHHcC-CCeEEEEeCCHHHHH----HHHHcCCc
Confidence 456788999998843 55444 4444442 236999999998864 44456653
No 449
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=61.12 E-value=1.5e+02 Score=31.60 Aligned_cols=58 Identities=28% Similarity=0.300 Sum_probs=36.0
Q ss_pred CCCCeEEEecCCCChHHHHHHHhcCCC-cEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchh
Q 011036 260 QKGERILDMCAAPGGKTTAIASLLRDE-GEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (495)
Q Consensus 260 qpGerVLDmCAaPGgKT~~iA~lm~~~-G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (495)
.+|.+||=.+ |.||...++|..+..+ .+|+.+|++... ..+.+.+++++. .++..|..
T Consensus 208 ~~g~~vlItG-asggIG~~la~~l~~~Ga~vi~~~~~~~~-~~l~~~~~~~~~---~~~~~Dv~ 266 (450)
T PRK08261 208 LAGKVALVTG-AARGIGAAIAEVLARDGAHVVCLDVPAAG-EALAAVANRVGG---TALALDIT 266 (450)
T ss_pred CCCCEEEEec-CCCHHHHHHHHHHHHCCCEEEEEeCCccH-HHHHHHHHHcCC---eEEEEeCC
Confidence 4577777655 4688888888866433 489999985432 334455555553 34556643
No 450
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=60.76 E-value=73 Score=33.79 Aligned_cols=50 Identities=14% Similarity=0.176 Sum_probs=33.2
Q ss_pred HHHHHhhcCCCCC----CeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHH
Q 011036 250 SIVTAHALDPQKG----ERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDI 302 (495)
Q Consensus 250 S~v~~~~LdpqpG----erVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i 302 (495)
.++...+++...| ...+|.++|-|.-+-++..... .|-+++.+..-+...
T Consensus 162 ~~~~~~il~~~~Gf~~v~~avDvGgGiG~v~k~ll~~fp---~ik~infdlp~v~~~ 215 (342)
T KOG3178|consen 162 TLVMKKILEVYTGFKGVNVAVDVGGGIGRVLKNLLSKYP---HIKGINFDLPFVLAA 215 (342)
T ss_pred HHHHHhhhhhhcccccCceEEEcCCcHhHHHHHHHHhCC---CCceeecCHHHHHhh
Confidence 3344455666566 6799999999999988887432 255666665555433
No 451
>PRK12744 short chain dehydrogenase; Provisional
Probab=60.68 E-value=1.6e+02 Score=28.35 Aligned_cols=60 Identities=17% Similarity=0.231 Sum_probs=35.3
Q ss_pred CCeEEEecCCCChHHHHHHHhcCCCc-EEEEEeCC----hHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 262 GERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRS----HNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 262 GerVLDmCAaPGgKT~~iA~lm~~~G-~ViA~D~s----~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
|.+|| +.-|.||...++|..+..+| +|+.++++ ..+...+.+..+..+. .+.++..|...
T Consensus 8 ~k~vl-ItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~D~~~ 72 (257)
T PRK12744 8 GKVVL-IAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGA-KAVAFQADLTT 72 (257)
T ss_pred CcEEE-EECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCC-cEEEEecCcCC
Confidence 55666 45568889999988765555 66676543 3334333333333332 36677777643
No 452
>PRK07074 short chain dehydrogenase; Provisional
Probab=60.59 E-value=1.3e+02 Score=29.06 Aligned_cols=56 Identities=21% Similarity=0.272 Sum_probs=36.4
Q ss_pred eEEEecCCCChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 264 RILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 264 rVLDmCAaPGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
+|| +..|.|+.+.+++..+..+| +|++++++..+...+.+ .+.-..+.++..|...
T Consensus 4 ~il-ItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~---~~~~~~~~~~~~D~~~ 60 (257)
T PRK07074 4 TAL-VTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFAD---ALGDARFVPVACDLTD 60 (257)
T ss_pred EEE-EECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH---HhcCCceEEEEecCCC
Confidence 344 34557788888888664444 89999999887765433 3222346677777644
No 453
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=60.08 E-value=85 Score=32.76 Aligned_cols=50 Identities=26% Similarity=0.333 Sum_probs=34.5
Q ss_pred cCCCCCCeEEEecCCCChHHHHHHHhcCCCc--EEEEEeCChHHHHHHHHHHHHhCCC
Q 011036 257 LDPQKGERILDMCAAPGGKTTAIASLLRDEG--EVVAVDRSHNKVMDIQKLAAEMGLK 312 (495)
Q Consensus 257 LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G--~ViA~D~s~~kv~~i~~~a~~~gl~ 312 (495)
...++|++||=. |.|+-...++++.+..| .|++++.+..|. +.++++|++
T Consensus 199 ~~~~~g~~VlV~--g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~----~~~~~~g~~ 250 (384)
T cd08265 199 GGFRPGAYVVVY--GAGPIGLAAIALAKAAGASKVIAFEISEERR----NLAKEMGAD 250 (384)
T ss_pred CCCCCCCEEEEE--CCCHHHHHHHHHHHHcCCCEEEEEcCCHHHH----HHHHHcCCC
Confidence 357889999877 35777666555444344 699999988764 566677764
No 454
>PRK07825 short chain dehydrogenase; Provisional
Probab=60.00 E-value=1.7e+02 Score=28.53 Aligned_cols=55 Identities=22% Similarity=0.239 Sum_probs=36.5
Q ss_pred CCeEEEecCCCChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchh
Q 011036 262 GERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (495)
Q Consensus 262 GerVLDmCAaPGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (495)
|.+|| +.-|.||.+.+++..+..+| .|++++++..++..+.+ .++ .+..+..|..
T Consensus 5 ~~~il-VtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~---~~~--~~~~~~~D~~ 60 (273)
T PRK07825 5 GKVVA-ITGGARGIGLATARALAALGARVAIGDLDEALAKETAA---ELG--LVVGGPLDVT 60 (273)
T ss_pred CCEEE-EeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH---Hhc--cceEEEccCC
Confidence 45666 45567889999988654444 78899999887755433 333 3556667754
No 455
>PLN02540 methylenetetrahydrofolate reductase
Probab=59.94 E-value=15 Score=41.41 Aligned_cols=62 Identities=18% Similarity=0.224 Sum_probs=53.9
Q ss_pred CCeEEEecCCCCh----HHHHHHHhcCCC-c-----EEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 262 GERILDMCAAPGG----KTTAIASLLRDE-G-----EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 262 GerVLDmCAaPGg----KT~~iA~lm~~~-G-----~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
+-..+|+.-|+|| +|..+|..+++. | ++++.|++...+......++++|+.+|-++.+|..+
T Consensus 28 ~P~FisVT~gAgGst~~~Tl~la~~lq~~~Gie~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILALrGDpp~ 99 (565)
T PLN02540 28 GPLFCDITWGAGGSTADLTLDIANRMQNMICVETMMHLTCTNMPVEKIDHALETIKSNGIQNILALRGDPPH 99 (565)
T ss_pred CCCEEEeCCCCCCCcHHHHHHHHHHHHHhcCCCeeEEeeecCCCHHHHHHHHHHHHHCCCCEEEEECCCCCC
Confidence 3468999999998 788888887665 3 788999999999999999999999999999999754
No 456
>PRK05884 short chain dehydrogenase; Provisional
Probab=59.72 E-value=1.6e+02 Score=28.24 Aligned_cols=48 Identities=17% Similarity=0.215 Sum_probs=31.8
Q ss_pred cCCCChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchh
Q 011036 269 CAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (495)
Q Consensus 269 CAaPGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (495)
.-|.||-..+++..+..+| .|+.++++..++..+. ++.+ +.++..|..
T Consensus 6 tGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~---~~~~---~~~~~~D~~ 54 (223)
T PRK05884 6 TGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAA---KELD---VDAIVCDNT 54 (223)
T ss_pred EeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH---Hhcc---CcEEecCCC
Confidence 4566888888888664444 8999999987765443 3333 345666653
No 457
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=59.70 E-value=81 Score=32.02 Aligned_cols=48 Identities=25% Similarity=0.281 Sum_probs=29.2
Q ss_pred CCCCCCeEEEecCCCChHH---HHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCC
Q 011036 258 DPQKGERILDMCAAPGGKT---TAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK 312 (495)
Q Consensus 258 dpqpGerVLDmCAaPGgKT---~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~ 312 (495)
..++|++||-.++ |+-. .++|..++ ...|++++.+..|.. .++++|.+
T Consensus 160 ~~~~g~~vlV~g~--g~vg~~~~~la~~~G-~~~v~~~~~~~~~~~----~~~~~g~~ 210 (341)
T cd05281 160 GDVSGKSVLITGC--GPIGLMAIAVAKAAG-ASLVIASDPNPYRLE----LAKKMGAD 210 (341)
T ss_pred cCCCCCEEEEECC--CHHHHHHHHHHHHcC-CcEEEEECCCHHHHH----HHHHhCcc
Confidence 4478999988543 5544 44444442 116888888887764 44456653
No 458
>PRK08177 short chain dehydrogenase; Provisional
Probab=59.67 E-value=73 Score=30.22 Aligned_cols=48 Identities=25% Similarity=0.302 Sum_probs=32.5
Q ss_pred ecCCCChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHHhCCCceEEEEcch
Q 011036 268 MCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321 (495)
Q Consensus 268 mCAaPGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da 321 (495)
+.-|.|+.+.+++..+...| .|+++|++..+...+.+. ..+.+++.|.
T Consensus 6 ItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~------~~~~~~~~D~ 54 (225)
T PRK08177 6 IIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTALQAL------PGVHIEKLDM 54 (225)
T ss_pred EeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchHHHHhc------cccceEEcCC
Confidence 45567899999988775555 899999998776544322 2345555564
No 459
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=59.00 E-value=1.2e+02 Score=30.68 Aligned_cols=49 Identities=20% Similarity=0.207 Sum_probs=34.0
Q ss_pred cCCCCCCeEEEecCCCChHHHHHHHhcCCCc--EEEEEeCChHHHHHHHHHHHHhCC
Q 011036 257 LDPQKGERILDMCAAPGGKTTAIASLLRDEG--EVVAVDRSHNKVMDIQKLAAEMGL 311 (495)
Q Consensus 257 LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G--~ViA~D~s~~kv~~i~~~a~~~gl 311 (495)
...++|++||=. + .|+....++++.+..| .|++++.+..|.. .++++|.
T Consensus 163 ~~~~~~~~vlI~-g-~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~----~~~~~g~ 213 (344)
T cd08284 163 AQVRPGDTVAVI-G-CGPVGLCAVLSAQVLGAARVFAVDPVPERLE----RAAALGA 213 (344)
T ss_pred cCCccCCEEEEE-C-CcHHHHHHHHHHHHcCCceEEEEcCCHHHHH----HHHHhCC
Confidence 456789999876 3 5777766666555555 6999998887754 3445665
No 460
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=58.95 E-value=49 Score=35.91 Aligned_cols=46 Identities=17% Similarity=0.033 Sum_probs=32.6
Q ss_pred CCCCeEEEecCCCChHHHHH-HHhcCCCcEEEEEeCChHHHHHHHHHHHHhCC
Q 011036 260 QKGERILDMCAAPGGKTTAI-ASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL 311 (495)
Q Consensus 260 qpGerVLDmCAaPGgKT~~i-A~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl 311 (495)
-+|++|+=+++||=|..... +..++ ..|+++|+++.|.. .|+.+|.
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~G--a~ViV~d~d~~R~~----~A~~~G~ 246 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQG--ARVIVTEVDPICAL----QAAMEGY 246 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEECChhhHH----HHHhcCC
Confidence 57999999999886665543 33332 37999999998864 4455675
No 461
>PRK06114 short chain dehydrogenase; Provisional
Probab=58.81 E-value=1.6e+02 Score=28.48 Aligned_cols=60 Identities=18% Similarity=0.198 Sum_probs=38.0
Q ss_pred CCeEEEecCCCChHHHHHHHhcCCCc-EEEEEeCChH-HHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 262 GERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHN-KVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 262 GerVLDmCAaPGgKT~~iA~lm~~~G-~ViA~D~s~~-kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
|.++| +.-|.||-+.++|..+..+| +|+.+|++.. .+..+.+..+..+. .+..+..|...
T Consensus 8 ~k~~l-VtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~-~~~~~~~D~~~ 69 (254)
T PRK06114 8 GQVAF-VTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGR-RAIQIAADVTS 69 (254)
T ss_pred CCEEE-EECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCC-ceEEEEcCCCC
Confidence 55666 55678889999988664444 8999999754 34444444443332 35667777543
No 462
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=58.66 E-value=1.8e+02 Score=28.06 Aligned_cols=60 Identities=15% Similarity=0.141 Sum_probs=39.2
Q ss_pred CeEEEecCCCChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHH-hCCCceEEEEcchhH
Q 011036 263 ERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAE-MGLKCITTYKLDALK 323 (495)
Q Consensus 263 erVLDmCAaPGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~-~gl~~i~~~~~Da~~ 323 (495)
.+||=.+ |.|+-+.+++..+..+| .|+.+|++..+...+.+..+. .+-..+.++..|...
T Consensus 3 k~ilItG-~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 64 (259)
T PRK12384 3 QVAVVIG-GGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATS 64 (259)
T ss_pred CEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCC
Confidence 4566555 56888888887664444 899999998887666544332 222346777777643
No 463
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=58.62 E-value=86 Score=31.82 Aligned_cols=49 Identities=22% Similarity=0.363 Sum_probs=30.8
Q ss_pred CCCCCCeEEEecCCCChHHHHHHHhcCCCc-E-EEEEeCChHHHHHHHHHHHHhCCC
Q 011036 258 DPQKGERILDMCAAPGGKTTAIASLLRDEG-E-VVAVDRSHNKVMDIQKLAAEMGLK 312 (495)
Q Consensus 258 dpqpGerVLDmCAaPGgKT~~iA~lm~~~G-~-ViA~D~s~~kv~~i~~~a~~~gl~ 312 (495)
..++|++||- .+ .|+-...++++.+..| + |++++.+..|.. .++++|.+
T Consensus 158 ~~~~g~~vlI-~~-~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~----~~~~~g~~ 208 (340)
T TIGR00692 158 GPISGKSVLV-TG-AGPIGLMAIAVAKASGAYPVIVSDPNEYRLE----LAKKMGAT 208 (340)
T ss_pred cCCCCCEEEE-EC-CCHHHHHHHHHHHHcCCcEEEEECCCHHHHH----HHHHhCCc
Confidence 3578999988 43 4665555544444344 4 888888887764 34555653
No 464
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=58.58 E-value=1.2e+02 Score=30.42 Aligned_cols=52 Identities=23% Similarity=0.290 Sum_probs=33.4
Q ss_pred hhcCCCCCCeEEEecCCCChHHHHHHHhcCC--CcEEEEEeCChHHHHHHHHHHHHhCCC
Q 011036 255 HALDPQKGERILDMCAAPGGKTTAIASLLRD--EGEVVAVDRSHNKVMDIQKLAAEMGLK 312 (495)
Q Consensus 255 ~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~--~G~ViA~D~s~~kv~~i~~~a~~~gl~ 312 (495)
.....++|++||=.++ |+-...++++.+. ...|++++.+..+...+ +++|.+
T Consensus 156 ~~~~~~~g~~vlV~g~--g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~----~~~g~~ 209 (338)
T PRK09422 156 KVSGIKPGQWIAIYGA--GGLGNLALQYAKNVFNAKVIAVDINDDKLALA----KEVGAD 209 (338)
T ss_pred HhcCCCCCCEEEEECC--cHHHHHHHHHHHHhCCCeEEEEeCChHHHHHH----HHcCCc
Confidence 4456789999988763 5544443333321 34899999999886544 445654
No 465
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=58.17 E-value=41 Score=33.97 Aligned_cols=56 Identities=16% Similarity=0.242 Sum_probs=35.8
Q ss_pred ecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhHHHH
Q 011036 268 MCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVR 326 (495)
Q Consensus 268 mCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~~~~ 326 (495)
+-..||+=.. ++.+|+.+-+.+++|..+.-...++++++. -..+.+++.|+++.+.
T Consensus 62 l~~YPGSP~i-a~~llR~qDrl~l~ELHp~d~~~L~~~~~~--~~~v~v~~~DG~~~l~ 117 (245)
T PF04378_consen 62 LRFYPGSPAI-AARLLREQDRLVLFELHPQDFEALKKNFRR--DRRVRVHHRDGYEGLK 117 (245)
T ss_dssp --EEE-HHHH-HHHHS-TTSEEEEE--SHHHHHHHTTS--T--TS-EEEE-S-HHHHHH
T ss_pred cCcCCCCHHH-HHHhCCccceEEEEecCchHHHHHHHHhcc--CCccEEEeCchhhhhh
Confidence 5578997553 355788899999999999999888877664 3579999999999764
No 466
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=57.84 E-value=1.9e+02 Score=28.39 Aligned_cols=59 Identities=25% Similarity=0.230 Sum_probs=35.0
Q ss_pred CCeEEEecC-CCChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchh
Q 011036 262 GERILDMCA-APGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (495)
Q Consensus 262 GerVLDmCA-aPGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (495)
|.+||=-++ |.+|...++|..+..+| .|+.+++.......++++.++.+- ..++..|..
T Consensus 6 ~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Dv~ 66 (260)
T PRK06997 6 GKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGS--DLVFPCDVA 66 (260)
T ss_pred CcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchHHHHHHHHHHHhcCC--cceeeccCC
Confidence 667777776 57888888887664444 777776543323344444454442 234566654
No 467
>PRK08263 short chain dehydrogenase; Provisional
Probab=57.36 E-value=1.2e+02 Score=29.83 Aligned_cols=56 Identities=20% Similarity=0.194 Sum_probs=36.9
Q ss_pred CeEEEecCCCChHHHHHHHhcCCC-cEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 263 ERILDMCAAPGGKTTAIASLLRDE-GEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 263 erVLDmCAaPGgKT~~iA~lm~~~-G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
.+||=.+ |.|+.+.+++..+..+ -+|++++++..++..+.+. ++ ..+..++.|...
T Consensus 4 k~vlItG-asg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~---~~-~~~~~~~~D~~~ 60 (275)
T PRK08263 4 KVWFITG-ASRGFGRAWTEAALERGDRVVATARDTATLADLAEK---YG-DRLLPLALDVTD 60 (275)
T ss_pred CEEEEeC-CCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHh---cc-CCeeEEEccCCC
Confidence 3455544 5788999998866434 4899999998887655432 22 246667777643
No 468
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=57.35 E-value=1.6e+02 Score=27.64 Aligned_cols=54 Identities=24% Similarity=0.215 Sum_probs=35.7
Q ss_pred cCCCChHHHHHHHhcCCCc-EEEEEeCCh-HHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 269 CAAPGGKTTAIASLLRDEG-EVVAVDRSH-NKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 269 CAaPGgKT~~iA~lm~~~G-~ViA~D~s~-~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
.-|.|+-+.+++..+..+| +|+.++++. .++..+.+..+..|. .+.++..|...
T Consensus 4 tG~~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~ 59 (239)
T TIGR01830 4 TGASRGIGRAIALKLAKEGAKVIITYRSSEEGAEEVVEELKAYGV-KALGVVCDVSD 59 (239)
T ss_pred ECCCcHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCC-ceEEEEecCCC
Confidence 3467888899988775555 899999875 555555555555442 36677777643
No 469
>PRK12746 short chain dehydrogenase; Provisional
Probab=57.26 E-value=1.8e+02 Score=27.80 Aligned_cols=60 Identities=22% Similarity=0.185 Sum_probs=37.2
Q ss_pred CCeEEEecCCCChHHHHHHHhcCCCc-EEEEE-eCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 262 GERILDMCAAPGGKTTAIASLLRDEG-EVVAV-DRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 262 GerVLDmCAaPGgKT~~iA~lm~~~G-~ViA~-D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
+.+|| +.-|.|+-+.++|..+..+| +|+.+ .++..+...+.+.....+ ..+.++..|..+
T Consensus 6 ~~~il-ItGasg~iG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~d 67 (254)
T PRK12746 6 GKVAL-VTGASRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREIESNG-GKAFLIEADLNS 67 (254)
T ss_pred CCEEE-EeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC-CcEEEEEcCcCC
Confidence 45666 44568999999998765556 55453 677766655444333322 236677777644
No 470
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=57.02 E-value=19 Score=36.97 Aligned_cols=40 Identities=23% Similarity=0.557 Sum_probs=28.4
Q ss_pred CCCCCCccEEEEcCCCCCC-CCcccchhhhhcHHHHHHhHHHHHHHHHHHHhcCCCCCEEEEE
Q 011036 420 GFSPNSFDRVLLDAPCSAL-GLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYS 481 (495)
Q Consensus 420 ~f~~~sFDrVLlDaPCSgl-G~rp~l~~~~~t~~~l~~~a~~Qrrll~~A~~lLkpGG~LVYS 481 (495)
+...++.|+++. |-+| |+. -..++..|.++||+||.|-..
T Consensus 223 Pl~d~svDvaV~---CLSLMgtn-------------------~~df~kEa~RiLk~gG~l~IA 263 (325)
T KOG3045|consen 223 PLEDESVDVAVF---CLSLMGTN-------------------LADFIKEANRILKPGGLLYIA 263 (325)
T ss_pred cCccCcccEEEe---eHhhhccc-------------------HHHHHHHHHHHhccCceEEEE
Confidence 345679999987 6554 321 124688999999999988654
No 471
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=56.91 E-value=1.8e+02 Score=29.56 Aligned_cols=60 Identities=20% Similarity=0.114 Sum_probs=37.7
Q ss_pred CCeEEEecCCCChHHHHHHHhcCCCc--EEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 262 GERILDMCAAPGGKTTAIASLLRDEG--EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 262 GerVLDmCAaPGgKT~~iA~lm~~~G--~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
+.+||= .-|.+|...++|..+..+| .|+.++++..+...+.+.....+ ..+.++.+|...
T Consensus 3 ~k~vlI-TGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~ 64 (314)
T TIGR01289 3 KPTVII-TGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLGMPK-DSYTIMHLDLGS 64 (314)
T ss_pred CCEEEE-ECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcCCC-CeEEEEEcCCCC
Confidence 445664 5566888888887664445 89999999887765544332111 235666677543
No 472
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=56.82 E-value=29 Score=37.25 Aligned_cols=49 Identities=22% Similarity=0.211 Sum_probs=36.9
Q ss_pred HHHHhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHH
Q 011036 251 IVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDI 302 (495)
Q Consensus 251 ~v~~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i 302 (495)
.+=..+|+++|+++||=+++|--+--.+ |+.+-.+|+|||.|+.-+..+
T Consensus 25 ~vD~~aL~i~~~d~vl~ItSaG~N~L~y---L~~~P~~I~aVDlNp~Q~aLl 73 (380)
T PF11899_consen 25 RVDMEALNIGPDDRVLTITSAGCNALDY---LLAGPKRIHAVDLNPAQNALL 73 (380)
T ss_pred HHHHHHhCCCCCCeEEEEccCCchHHHH---HhcCCceEEEEeCCHHHHHHH
Confidence 3456789999999999998876554333 445668999999998766544
No 473
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=56.22 E-value=1.8e+02 Score=29.39 Aligned_cols=60 Identities=22% Similarity=0.128 Sum_probs=37.3
Q ss_pred CCeEEEecCCCChHHHHHHHhcCCCc-EEEEEeCC-hHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 262 GERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRS-HNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 262 GerVLDmCAaPGgKT~~iA~lm~~~G-~ViA~D~s-~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
|.++| +.-|.||...++|..+..+| +|+.+|++ ..++..+.+..+..|. .+.++..|...
T Consensus 12 ~k~~l-VTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~-~~~~~~~Dv~d 73 (306)
T PRK07792 12 GKVAV-VTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAGA-KAVAVAGDISQ 73 (306)
T ss_pred CCEEE-EECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcCC-eEEEEeCCCCC
Confidence 55666 66667888999988664444 88888985 3455444444444342 35667777543
No 474
>PRK06484 short chain dehydrogenase; Validated
Probab=55.76 E-value=1.6e+02 Score=31.92 Aligned_cols=57 Identities=23% Similarity=0.342 Sum_probs=37.8
Q ss_pred CCCeEEEecCCCChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchh
Q 011036 261 KGERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (495)
Q Consensus 261 pGerVLDmCAaPGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (495)
.|.+|| +..|.+|.+.++|..+...| .|+.++++..++.. .+++++. .+.++..|..
T Consensus 4 ~~k~~l-ITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~---~~~~~~~-~~~~~~~D~~ 61 (520)
T PRK06484 4 QSRVVL-VTGAAGGIGRAACQRFARAGDQVVVADRNVERARE---RADSLGP-DHHALAMDVS 61 (520)
T ss_pred CCeEEE-EECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHH---HHHHhCC-ceeEEEeccC
Confidence 466666 45556778888888665555 89999999887654 3444443 3456677754
No 475
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=55.68 E-value=1.8e+02 Score=27.44 Aligned_cols=53 Identities=26% Similarity=0.209 Sum_probs=33.2
Q ss_pred cCCCChHHHHHHHhcCCC-cEEEEEeCChHHHHHHHHHHHHhCC--CceEEEEcchhH
Q 011036 269 CAAPGGKTTAIASLLRDE-GEVVAVDRSHNKVMDIQKLAAEMGL--KCITTYKLDALK 323 (495)
Q Consensus 269 CAaPGgKT~~iA~lm~~~-G~ViA~D~s~~kv~~i~~~a~~~gl--~~i~~~~~Da~~ 323 (495)
.-|.|+.+.++|..+..+ -.|++++++.. ...++..+..+. ..+.++..|...
T Consensus 8 tG~s~~iG~~la~~l~~~g~~vi~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~D~~~ 63 (245)
T PRK12824 8 TGAKRGIGSAIARELLNDGYRVIATYFSGN--DCAKDWFEEYGFTEDQVRLKELDVTD 63 (245)
T ss_pred eCCCchHHHHHHHHHHHcCCEEEEEeCCcH--HHHHHHHHHhhccCCeEEEEEcCCCC
Confidence 446888999998876433 48999999864 233333333321 236777777643
No 476
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=55.64 E-value=1.6e+02 Score=28.42 Aligned_cols=58 Identities=16% Similarity=0.275 Sum_probs=35.2
Q ss_pred CCeEEEecCCCChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 262 GERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 262 GerVLDmCAaPGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
|.++| ++.|.||-+.++|..+...| .|+++|++.. ....+.++..+ ..+..+..|...
T Consensus 10 ~k~~l-ItG~~~gIG~a~a~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~-~~~~~~~~Dl~~ 68 (253)
T PRK08993 10 GKVAV-VTGCDTGLGQGMALGLAEAGCDIVGINIVEP--TETIEQVTALG-RRFLSLTADLRK 68 (253)
T ss_pred CCEEE-EECCCchHHHHHHHHHHHCCCEEEEecCcch--HHHHHHHHhcC-CeEEEEECCCCC
Confidence 45555 45567889999988765444 8888888653 22223333333 235667777643
No 477
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=55.47 E-value=2e+02 Score=27.79 Aligned_cols=56 Identities=21% Similarity=0.202 Sum_probs=37.6
Q ss_pred eEEEecCCCChHHHHHHHhcCCC-cEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchh
Q 011036 264 RILDMCAAPGGKTTAIASLLRDE-GEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (495)
Q Consensus 264 rVLDmCAaPGgKT~~iA~lm~~~-G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (495)
+||=.+ |.||.+.++|..+..+ ..|+.+++++.++..+.+.++..+ .+..+..|..
T Consensus 2 ~vlItG-as~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~Dv~ 58 (259)
T PRK08340 2 NVLVTA-SSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEYG--EVYAVKADLS 58 (259)
T ss_pred eEEEEc-CCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEcCCC
Confidence 344444 4577888888766433 489999999988877666555433 4566777754
No 478
>PRK07904 short chain dehydrogenase; Provisional
Probab=54.88 E-value=37 Score=33.27 Aligned_cols=62 Identities=16% Similarity=0.136 Sum_probs=42.8
Q ss_pred CCCeEEEecCCCChHHHHHHHhcCCC--cEEEEEeCChHH-HHHHHHHHHHhCCCceEEEEcchhH
Q 011036 261 KGERILDMCAAPGGKTTAIASLLRDE--GEVVAVDRSHNK-VMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 261 pGerVLDmCAaPGgKT~~iA~lm~~~--G~ViA~D~s~~k-v~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
.+.+||=. -|.||.+.++|..+..+ -.|++++++..+ +..+.+..+..+-..+.++.+|...
T Consensus 7 ~~~~vlIt-Gas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~ 71 (253)
T PRK07904 7 NPQTILLL-GGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALD 71 (253)
T ss_pred CCcEEEEE-cCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCC
Confidence 34566654 45789999999765333 389999999876 6666555555554467888888643
No 479
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=54.84 E-value=36 Score=36.76 Aligned_cols=53 Identities=19% Similarity=0.156 Sum_probs=38.6
Q ss_pred HhhcCCCCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHH
Q 011036 254 AHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAE 308 (495)
Q Consensus 254 ~~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~ 308 (495)
..+.|--+=+.|.|++||+|.-+..|+. +..-.|+|+|-|+.-.++.+++=+.
T Consensus 146 Ssi~~f~gi~~vvD~GaG~G~LSr~lSl--~y~lsV~aIegsq~~~~ra~rLdkh 198 (476)
T KOG2651|consen 146 SSISDFTGIDQVVDVGAGQGHLSRFLSL--GYGLSVKAIEGSQRLVERAQRLDKH 198 (476)
T ss_pred HHHHhhcCCCeeEEcCCCchHHHHHHhh--ccCceEEEeccchHHHHHHHHHHHH
Confidence 3334444557899999999977776664 4556899999998777776665544
No 480
>PRK09186 flagellin modification protein A; Provisional
Probab=54.75 E-value=1.9e+02 Score=27.72 Aligned_cols=61 Identities=23% Similarity=0.285 Sum_probs=39.0
Q ss_pred CCeEEEecCCCChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHH-HhCCCceEEEEcchhH
Q 011036 262 GERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAA-EMGLKCITTYKLDALK 323 (495)
Q Consensus 262 GerVLDmCAaPGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~-~~gl~~i~~~~~Da~~ 323 (495)
|.+||= +-|.||.+.++|..+..+| +|+.++++..++..+.+... ..+-..+.++..|..+
T Consensus 4 ~k~vlI-tGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d 66 (256)
T PRK09186 4 GKTILI-TGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITD 66 (256)
T ss_pred CCEEEE-ECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCC
Confidence 455554 4457889999998775444 89999999888766554442 2232334555666543
No 481
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=54.51 E-value=24 Score=38.74 Aligned_cols=55 Identities=18% Similarity=0.123 Sum_probs=45.8
Q ss_pred eEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCC-ceEEEEcc
Q 011036 264 RILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLD 320 (495)
Q Consensus 264 rVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~-~i~~~~~D 320 (495)
.|||+++|+|-.+.+.+..+.+ .|+|++.=+.++..+++...++|.+ .|+++.--
T Consensus 69 ~vLdigtGTGLLSmMAvragaD--~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkr 124 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGAD--SVTACEVFKPMVDLARKIMHKNGMSDKINVINKR 124 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCC--eEEeehhhchHHHHHHHHHhcCCCccceeeeccc
Confidence 5999999999888777776644 5999999999999999999999986 47766543
No 482
>PRK07856 short chain dehydrogenase; Provisional
Probab=54.01 E-value=1.7e+02 Score=28.24 Aligned_cols=51 Identities=22% Similarity=0.246 Sum_probs=33.8
Q ss_pred CCeEEEecCCCChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchh
Q 011036 262 GERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (495)
Q Consensus 262 GerVLDmCAaPGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (495)
|.+|| +.-|.||.+.+++..+...| .|+.++++..+ +..+ ..+.++..|..
T Consensus 6 ~k~~l-ItGas~gIG~~la~~l~~~g~~v~~~~r~~~~--------~~~~-~~~~~~~~D~~ 57 (252)
T PRK07856 6 GRVVL-VTGGTRGIGAGIARAFLAAGATVVVCGRRAPE--------TVDG-RPAEFHAADVR 57 (252)
T ss_pred CCEEE-EeCCCchHHHHHHHHHHHCCCEEEEEeCChhh--------hhcC-CceEEEEccCC
Confidence 55666 56667888888887664444 89999998755 1112 23566777753
No 483
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=53.90 E-value=1.7e+02 Score=29.43 Aligned_cols=52 Identities=23% Similarity=0.273 Sum_probs=33.6
Q ss_pred hhcCCCCCCeEEEecCCC--ChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCC
Q 011036 255 HALDPQKGERILDMCAAP--GGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK 312 (495)
Q Consensus 255 ~~LdpqpGerVLDmCAaP--GgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~ 312 (495)
+.+..++|++||=..+++ |--+.++|..++ -.|+++..+..+.. .++++|.+
T Consensus 159 ~~~~~~~~~~vlV~g~~~~vg~~~~~~a~~~g--~~v~~~~~~~~~~~----~~~~~g~~ 212 (341)
T cd08297 159 KKAGLKPGDWVVISGAGGGLGHLGVQYAKAMG--LRVIAIDVGDEKLE----LAKELGAD 212 (341)
T ss_pred HhcCCCCCCEEEEECCCchHHHHHHHHHHHCC--CeEEEEeCCHHHHH----HHHHcCCc
Confidence 345788999998776643 444444555443 37999999987754 33456654
No 484
>PRK06125 short chain dehydrogenase; Provisional
Probab=53.66 E-value=2.2e+02 Score=27.55 Aligned_cols=60 Identities=22% Similarity=0.183 Sum_probs=40.0
Q ss_pred CCeEEEecCCCChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchh
Q 011036 262 GERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (495)
Q Consensus 262 GerVLDmCAaPGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (495)
|.+||=.+ |.||-+.+++..+...| .|+++++++.+...+.+.++...-..+.++..|..
T Consensus 7 ~k~vlItG-~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~ 67 (259)
T PRK06125 7 GKRVLITG-ASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHGVDVAVHALDLS 67 (259)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCC
Confidence 55555444 57888888887664444 89999999988877666555432234566666653
No 485
>PLN00015 protochlorophyllide reductase
Probab=53.47 E-value=1.9e+02 Score=29.25 Aligned_cols=54 Identities=28% Similarity=0.213 Sum_probs=35.0
Q ss_pred cCCCChHHHHHHHhcCCCc--EEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 269 CAAPGGKTTAIASLLRDEG--EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 269 CAaPGgKT~~iA~lm~~~G--~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
+-|.+|...++|..+..+| .|+.++++..++..+.+.....+ ..+.++.+|...
T Consensus 3 TGas~GIG~aia~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~d 58 (308)
T PLN00015 3 TGASSGLGLATAKALAETGKWHVVMACRDFLKAERAAKSAGMPK-DSYTVMHLDLAS 58 (308)
T ss_pred eCCCChHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhcCCC-CeEEEEEecCCC
Confidence 4578899999988665455 79999999887765443322111 245666777543
No 486
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=53.08 E-value=2.3e+02 Score=27.71 Aligned_cols=60 Identities=22% Similarity=0.258 Sum_probs=36.8
Q ss_pred CCeEEEecC-CCChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 262 GERILDMCA-APGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 262 GerVLDmCA-aPGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
|..||=-+| +.+|...++|..+..+| .|+..+++......++++.++.|- ..++..|..+
T Consensus 6 ~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Dv~~ 67 (261)
T PRK08690 6 GKKILITGMISERSIAYGIAKACREQGAELAFTYVVDKLEERVRKMAAELDS--ELVFRCDVAS 67 (261)
T ss_pred CcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhccCC--ceEEECCCCC
Confidence 556776665 47888888988764444 788877764333444555444442 3456777643
No 487
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=52.29 E-value=37 Score=38.42 Aligned_cols=67 Identities=19% Similarity=0.109 Sum_probs=46.3
Q ss_pred hcCCCCCCeEEEecCCCChHHHHHHHhcCCC-cEEEEEeCChHHHHHHHHHHHHhCC--------CceEEEEcchhH
Q 011036 256 ALDPQKGERILDMCAAPGGKTTAIASLLRDE-GEVVAVDRSHNKVMDIQKLAAEMGL--------KCITTYKLDALK 323 (495)
Q Consensus 256 ~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~-G~ViA~D~s~~kv~~i~~~a~~~gl--------~~i~~~~~Da~~ 323 (495)
-++.+.|.+||=.+ |.|+.+.+++..+... .+|++++|+..++..+.+....+++ ..+.++.+|..+
T Consensus 74 ~~~~~~gKvVLVTG-ATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD 149 (576)
T PLN03209 74 ELDTKDEDLAFVAG-ATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEK 149 (576)
T ss_pred ccccCCCCEEEEEC-CCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCC
Confidence 34556777777555 4689999998765333 4899999999988776655544332 236778888765
No 488
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=52.18 E-value=1.5e+02 Score=28.91 Aligned_cols=36 Identities=22% Similarity=0.159 Sum_probs=25.4
Q ss_pred CCCeEEEecCC-CChHHHHHHHhcCCCc-EEEEEeCCh
Q 011036 261 KGERILDMCAA-PGGKTTAIASLLRDEG-EVVAVDRSH 296 (495)
Q Consensus 261 pGerVLDmCAa-PGgKT~~iA~lm~~~G-~ViA~D~s~ 296 (495)
.|.++|=-+|+ .+|....+|..+..+| +|+..+++.
T Consensus 5 ~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~ 42 (258)
T PRK07370 5 TGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPD 42 (258)
T ss_pred CCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCc
Confidence 36677777774 6899999998775455 777666543
No 489
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=51.90 E-value=1.8e+02 Score=29.95 Aligned_cols=51 Identities=24% Similarity=0.331 Sum_probs=32.1
Q ss_pred hcCCCCCCeEEEecCCCChHHHHHHHhcCCCc--EEEEEeCChHHHHHHHHHHHHhCCC
Q 011036 256 ALDPQKGERILDMCAAPGGKTTAIASLLRDEG--EVVAVDRSHNKVMDIQKLAAEMGLK 312 (495)
Q Consensus 256 ~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G--~ViA~D~s~~kv~~i~~~a~~~gl~ 312 (495)
....++|++||-. ++ |+-...++++.+..| .|++++.+..+.. .++++|++
T Consensus 177 ~~~~~~g~~vLI~-g~-g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~----~~~~~g~~ 229 (363)
T cd08279 177 TARVRPGDTVAVI-GC-GGVGLNAIQGARIAGASRIIAVDPVPEKLE----LARRFGAT 229 (363)
T ss_pred ccCCCCCCEEEEE-CC-CHHHHHHHHHHHHcCCCcEEEEcCCHHHHH----HHHHhCCe
Confidence 3556889999988 33 655544444333333 4899999988864 33456653
No 490
>PRK08703 short chain dehydrogenase; Provisional
Probab=51.53 E-value=47 Score=31.77 Aligned_cols=60 Identities=20% Similarity=0.214 Sum_probs=41.5
Q ss_pred CCCeEEEecCCCChHHHHHHHhcCCC-cEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcch
Q 011036 261 KGERILDMCAAPGGKTTAIASLLRDE-GEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321 (495)
Q Consensus 261 pGerVLDmCAaPGgKT~~iA~lm~~~-G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da 321 (495)
.|.+||=.+ |.||.+.+++..+..+ ..|++++++..+...+.+.+...+-..+.++..|.
T Consensus 5 ~~k~vlItG-~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~ 65 (239)
T PRK08703 5 SDKTILVTG-ASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDL 65 (239)
T ss_pred CCCEEEEEC-CCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcCCCCcceEEeee
Confidence 356777665 5788888888766443 48999999998887776666554433455566665
No 491
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=51.24 E-value=22 Score=32.07 Aligned_cols=44 Identities=27% Similarity=0.523 Sum_probs=26.7
Q ss_pred CCccEEEEcCCCCCCCCcccchhhhhcHHHHHHhHHHHHHHHHHHHhcCCCCCEEEEEeCC
Q 011036 424 NSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCT 484 (495)
Q Consensus 424 ~sFDrVLlDaPCSglG~rp~l~~~~~t~~~l~~~a~~Qrrll~~A~~lLkpGG~LVYSTCT 484 (495)
..||.|.+|+= | =-..|.+|. ..+|....+++++||+|+-.||.
T Consensus 49 ~~~Da~ylDgF-s-P~~nPelWs---------------~e~~~~l~~~~~~~~~l~Tys~a 92 (124)
T PF05430_consen 49 ARFDAWYLDGF-S-PAKNPELWS---------------EELFKKLARLSKPGGTLATYSSA 92 (124)
T ss_dssp T-EEEEEE-SS---TTTSGGGSS---------------HHHHHHHHHHEEEEEEEEES--B
T ss_pred ccCCEEEecCC-C-CcCCcccCC---------------HHHHHHHHHHhCCCcEEEEeech
Confidence 47999999962 1 122455543 34677777999999998765553
No 492
>PRK12828 short chain dehydrogenase; Provisional
Probab=50.67 E-value=2.2e+02 Score=26.68 Aligned_cols=56 Identities=16% Similarity=0.127 Sum_probs=35.4
Q ss_pred CCeEEEecCCCChHHHHHHHhcCCC-cEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcch
Q 011036 262 GERILDMCAAPGGKTTAIASLLRDE-GEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321 (495)
Q Consensus 262 GerVLDmCAaPGgKT~~iA~lm~~~-G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da 321 (495)
|.+||=.+ |.|+-+.+++..+..+ .+|++++++..+.....+..+.. .++.+..|.
T Consensus 7 ~k~vlItG-atg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~---~~~~~~~D~ 63 (239)
T PRK12828 7 GKVVAITG-GFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPAD---ALRIGGIDL 63 (239)
T ss_pred CCEEEEEC-CCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhhc---CceEEEeec
Confidence 56777655 4588888988866433 48999999987765543322222 234455554
No 493
>PRK06483 dihydromonapterin reductase; Provisional
Probab=50.59 E-value=1.8e+02 Score=27.64 Aligned_cols=54 Identities=22% Similarity=0.159 Sum_probs=33.4
Q ss_pred CeEEEecCCCChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 263 ERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 263 erVLDmCAaPGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
.+||- ..|.||...++|..+..+| .|+++|++..... +..+..| +.++..|..+
T Consensus 3 k~vlI-tGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~---~~~~~~~---~~~~~~D~~~ 57 (236)
T PRK06483 3 APILI-TGAGQRIGLALAWHLLAQGQPVIVSYRTHYPAI---DGLRQAG---AQCIQADFST 57 (236)
T ss_pred ceEEE-ECCCChHHHHHHHHHHHCCCeEEEEeCCchhHH---HHHHHcC---CEEEEcCCCC
Confidence 34553 4556888999988764444 8999999876532 2223334 4566677543
No 494
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=50.40 E-value=1.4e+02 Score=28.96 Aligned_cols=57 Identities=21% Similarity=0.305 Sum_probs=37.7
Q ss_pred CCeEEEecCCCChHHHHHHHhcCCCc-EEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 262 GERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 262 GerVLDmCAaPGgKT~~iA~lm~~~G-~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
|.+||=.+ |.||.+.+++..+..+| .|+.+|++..++..+. ++++ ..+..+..|..+
T Consensus 6 ~k~vlVtG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~---~~~~-~~~~~~~~D~~~ 63 (263)
T PRK06200 6 GQVALITG-GGSGIGRALVERFLAEGARVAVLERSAEKLASLR---QRFG-DHVLVVEGDVTS 63 (263)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH---HHhC-CcceEEEccCCC
Confidence 55666555 46788988888664444 8999999988765543 3333 235566677543
No 495
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=50.34 E-value=1.6e+02 Score=29.77 Aligned_cols=52 Identities=17% Similarity=0.303 Sum_probs=33.4
Q ss_pred hhcCCCCCCeEEEecCCCChHHHHHHHhcCCCc--EEEEEeCChHHHHHHHHHHHHhCCC
Q 011036 255 HALDPQKGERILDMCAAPGGKTTAIASLLRDEG--EVVAVDRSHNKVMDIQKLAAEMGLK 312 (495)
Q Consensus 255 ~~LdpqpGerVLDmCAaPGgKT~~iA~lm~~~G--~ViA~D~s~~kv~~i~~~a~~~gl~ 312 (495)
+....++|+.||=. |.|+-...++++.+..| .|++++.+..+. +.++++|.+
T Consensus 162 ~~~~~~~g~~vlI~--g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~----~~~~~~ga~ 215 (345)
T cd08287 162 VSAGVRPGSTVVVV--GDGAVGLCAVLAAKRLGAERIIAMSRHEDRQ----ALAREFGAT 215 (345)
T ss_pred HhcCCCCCCEEEEE--CCCHHHHHHHHHHHHcCCCEEEEECCCHHHH----HHHHHcCCc
Confidence 34567889988874 35666655554443344 489999987664 455567764
No 496
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=50.04 E-value=2.9e+02 Score=27.95 Aligned_cols=59 Identities=15% Similarity=0.041 Sum_probs=38.1
Q ss_pred CCeEEEecCCCChHHHHHHHhcCCC-cEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchh
Q 011036 262 GERILDMCAAPGGKTTAIASLLRDE-GEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (495)
Q Consensus 262 GerVLDmCAaPGgKT~~iA~lm~~~-G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (495)
+.+||= .-|.||.+.+++..+... .+|+.++++..+...+.+.....+ ..+.++.+|..
T Consensus 6 ~k~vlV-TGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~ 65 (322)
T PRK07453 6 KGTVII-TGASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIPP-DSYTIIHIDLG 65 (322)
T ss_pred CCEEEE-EcCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhccC-CceEEEEecCC
Confidence 556664 456788999998765433 489999999888765544432111 24666777754
No 497
>PRK07041 short chain dehydrogenase; Provisional
Probab=49.76 E-value=2.3e+02 Score=26.67 Aligned_cols=53 Identities=21% Similarity=0.279 Sum_probs=34.3
Q ss_pred cCCCChHHHHHHHhcCCC-cEEEEEeCChHHHHHHHHHHHHhCCCceEEEEcchhH
Q 011036 269 CAAPGGKTTAIASLLRDE-GEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (495)
Q Consensus 269 CAaPGgKT~~iA~lm~~~-G~ViA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~~ 323 (495)
.-|.|+-+.+++..+..+ -+|++++++..++..+.+..++ + ..+.++..|...
T Consensus 3 tGas~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~-~-~~~~~~~~Dl~~ 56 (230)
T PRK07041 3 VGGSSGIGLALARAFAAEGARVTIASRSRDRLAAAARALGG-G-APVRTAALDITD 56 (230)
T ss_pred ecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-C-CceEEEEccCCC
Confidence 346788888888766433 4899999998877655443321 2 235666777543
No 498
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=49.65 E-value=38 Score=33.84 Aligned_cols=68 Identities=15% Similarity=0.094 Sum_probs=54.9
Q ss_pred CCCCeEEEecCCCChHHHHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCC-ceEEEEcchhHHHHhh
Q 011036 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALKAVRRK 328 (495)
Q Consensus 260 qpGerVLDmCAaPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~-~i~~~~~Da~~~~~~~ 328 (495)
+.|.+|.|+||=-+--...+..- +..-.++|.|++++-+..+.++.+..++. .|++..+|.+..+...
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~-~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~ 83 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKN-NPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELE 83 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhc-CCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCcc
Confidence 34777999999988877766552 33458999999999999999999999986 4999999998765433
No 499
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=49.45 E-value=1.9e+02 Score=28.71 Aligned_cols=46 Identities=20% Similarity=0.250 Sum_probs=28.1
Q ss_pred hhcCCCCCCeEEEecC--CCChHHHHHHHhcCCCcEEEEEeCChHHHHHH
Q 011036 255 HALDPQKGERILDMCA--APGGKTTAIASLLRDEGEVVAVDRSHNKVMDI 302 (495)
Q Consensus 255 ~~LdpqpGerVLDmCA--aPGgKT~~iA~lm~~~G~ViA~D~s~~kv~~i 302 (495)
+...+++|++||=..+ +-|-.+.++|..++ ..|+++..+..+...+
T Consensus 133 ~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G--~~v~~~~~~~~~~~~~ 180 (324)
T cd08292 133 DFLGVKPGQWLIQNAAGGAVGKLVAMLAAARG--INVINLVRRDAGVAEL 180 (324)
T ss_pred HhhCCCCCCEEEEcccccHHHHHHHHHHHHCC--CeEEEEecCHHHHHHH
Confidence 4467889999987654 23444445555543 3677777776665433
No 500
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=49.41 E-value=1.4e+02 Score=29.95 Aligned_cols=46 Identities=15% Similarity=0.190 Sum_probs=28.2
Q ss_pred CCCeEEEecCCCChHH---HHHHHhcCCCcEEEEEeCChHHHHHHHHHHHHhCCC
Q 011036 261 KGERILDMCAAPGGKT---TAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK 312 (495)
Q Consensus 261 pGerVLDmCAaPGgKT---~~iA~lm~~~G~ViA~D~s~~kv~~i~~~a~~~gl~ 312 (495)
+|+.+|=...|+|+-. .++|..++ .+|++++.+..|...+ +++|.+
T Consensus 142 ~~~~vlv~~~g~g~vG~~a~q~a~~~G--~~vi~~~~~~~~~~~~----~~~g~~ 190 (324)
T cd08291 142 EGAKAVVHTAAASALGRMLVRLCKADG--IKVINIVRRKEQVDLL----KKIGAE 190 (324)
T ss_pred CCCcEEEEccCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHH----HHcCCc
Confidence 4555554334555554 44555553 3799999999886544 446765
Done!