RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 011036
(495 letters)
>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId:
9606]}
Length = 293
Score = 55.9 bits (133), Expect = 3e-09
Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 3/120 (2%)
Query: 219 EGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTA 278
E + + + P + G + LQ+ S + A LDP G ++D CAAPG KT+
Sbjct: 55 ELLVFPAQTDLHEHPLY---RAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSH 111
Query: 279 IASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMC 338
+A+LL+++G++ A D ++ + L A G+ C + D L ++ +
Sbjct: 112 LAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 171
Score = 35.1 bits (79), Expect = 0.017
Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 4/64 (6%)
Query: 47 CIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFVK 106
+RVNTLKT +DDV+ + G S ASS+ P + ++
Sbjct: 5 FVRVNTLKTCSDDVVDYF----KRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELLVFP 60
Query: 107 GSGP 110
Sbjct: 61 AQTD 64
>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit
methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 284
Score = 54.7 bits (130), Expect = 7e-09
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
Query: 397 NMRRMRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQ--SL 454
R G G S+ FDR+LLDAPCSA G+ R + + +
Sbjct: 143 YDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDI 202
Query: 455 RNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEA 492
+ Q + D ++ GG +VY+TC++ P EN
Sbjct: 203 PELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSL 240
Score = 39.3 bits (90), Expect = 6e-04
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Query: 218 SEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTT 277
+ + ++ + LP F D + +Q+ + L PQ GE ILD+CAAPGGKTT
Sbjct: 62 PDAVRLETPAPVHALPGFEDGW---VTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTT 118
Query: 278 AIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESND 333
I + + +VVAVD ++ + +G+K + + D
Sbjct: 119 HILEVAPEA-QVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFD 173
Score = 36.6 bits (83), Expect = 0.005
Identities = 8/44 (18%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 21 EYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKL 64
+ +AY + + I +A + +R+N + D + L
Sbjct: 7 KRLQKAYP-EQWQSIVEANNQRP-PMWLRINRTHHSRDSWLALL 48
>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 313
Score = 51.6 bits (122), Expect = 9e-08
Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 2/106 (1%)
Query: 389 VSKADTRKNMRRMRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAE 448
V + R+ + N L + G FD++LLDAPC+ G + +
Sbjct: 149 VDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDAPCTGSGTIHKNPERK 208
Query: 449 ET--IQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEA 492
+ ++ Q R+ ++ +++++PGGI+VYSTC++ P ENE
Sbjct: 209 WNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEF 254
Score = 45.8 bits (107), Expect = 6e-06
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 8/59 (13%)
Query: 6 RYSYSPLLRWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKL 64
R YS L + + + +G + RI++A+ +P C RVNTLK + D++++L
Sbjct: 11 RLGYSKLF------ADRYFQLWG-ERAIRIAEAMEKPL-PRCFRVNTLKISVQDLVKRL 61
>d2apoa1 b.122.1.1 (A:247-331) Pseudouridine synthase II TruB,
C-terminal domain {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 85
Score = 45.9 bits (109), Expect = 3e-07
Identities = 27/113 (23%), Positives = 42/113 (37%), Gaps = 33/113 (29%)
Query: 124 KEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGT 183
K+V+V +A+ GA VYV G+ S + KG+ V V
Sbjct: 3 KKVVVKDSAVDAICHGADVYVRGIAKLSKGIGKGETVLV--------------------- 41
Query: 184 VLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFY 236
G + G A+M+ I A +G+AVD+ R++ Y
Sbjct: 42 -----------ETLKGEAVAVGKALMNTKEILNADKGVAVDV-ERVYMDRGTY 82
>d2ey4a1 b.122.1.1 (A:253-336) Pseudouridine synthase II TruB,
C-terminal domain {Archaeon Pyrococcus furiosus [TaxId:
2261]}
Length = 84
Score = 43.2 bits (102), Expect = 3e-06
Identities = 25/114 (21%), Positives = 43/114 (37%), Gaps = 34/114 (29%)
Query: 123 PKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRG 182
PK V + AV GA + VPG+ + +++GD+VA+
Sbjct: 2 PK-VWIKDSAVAAVTHGADLAVPGIAKLHAGIKRGDLVAI-------------------- 40
Query: 183 TVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFY 236
+ G AMM+ + ++GIAVD+ ++F +Y
Sbjct: 41 -------MTLKDEL-----VALGKAMMTSQEMLEKTKGIAVDVE-KVFMPRDWY 81
>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle
and C-terminal domains {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 324
Score = 46.0 bits (108), Expect = 5e-06
Identities = 17/111 (15%), Positives = 37/111 (33%), Gaps = 13/111 (11%)
Query: 383 GVERTYVSKADTRKNMRRMRNGPGRNQCLGGRAENSKGF--SPNSFDRVLLDAPCSALGL 440
G++++ + ++N + +G E + FD V+LD P
Sbjct: 173 GIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLDPPAFVQHE 232
Query: 441 RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENE 491
+ + + + LV+ GGI+V +C+ +
Sbjct: 233 KDLKAGL-----------RAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQM 272
>d1q7ha1 b.122.1.1 (A:69-153) Hypothetical protein Ta1423,
C-terminal domain {Archaeon Thermoplasma acidophilum
[TaxId: 2303]}
Length = 85
Score = 42.1 bits (99), Expect = 8e-06
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 126 VIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAV 162
V V +L G+ ++ PG+++ + KGD++ V
Sbjct: 5 VTVDEGAEPHILNGSDLFAPGIVSMDDSIRKGDMIFV 41
>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 209
Score = 43.2 bits (101), Expect = 2e-05
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 251 IVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG 310
I+ H L + ER+L + AA G + +A ++ + + AV+ S + +L E
Sbjct: 46 ILKGHRLKLRGDERVLYLGAASGTTVSHLADIVDEG-IIYAVEYSAKPFEKLLELVRERN 104
>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle
and C-terminal domains {Thermus thermophilus [TaxId:
274]}
Length = 318
Score = 42.6 bits (99), Expect = 6e-05
Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 14/97 (14%)
Query: 398 MRRMRNGPGRNQCLGGRAENSKGFSPNS---FDRVLLDAPCSALGLRPRLFAAEETIQSL 454
NG G + L A + FD V+LD P A G + A
Sbjct: 185 ENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDPPAFAKGKKDVERAY------- 237
Query: 455 RNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENE 491
+ + + +A++L++ GGI+ ++C+ + E
Sbjct: 238 ----RAYKEVNLRAIKLLKEGGILATASCSHHMTEPL 270
Score = 32.9 bits (74), Expect = 0.068
Identities = 28/148 (18%), Positives = 53/148 (35%), Gaps = 8/148 (5%)
Query: 216 RASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGK 275
E + V + + D+ G+ L ++ +GER LD+ + GG
Sbjct: 104 EVPERVQVQEGRVRYLV----DLRAGQKTGAYLDQRENRLYMERFRGERALDVFSYAGGF 159
Query: 276 TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEP 335
L EVVAVD S + ++ A GL + + +A +RR + +
Sbjct: 160 ALH---LALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERF 216
Query: 336 NMCNSKDNNYITSQTSDSMKLHKEVPSI 363
++ D D + ++ +
Sbjct: 217 DLVVL-DPPAFAKGKKDVERAYRAYKEV 243
>d2cx1a1 b.122.1.1 (A:91-183) Hypothetical protein APE0525,
C-terminal domain {Archaeon Aeropyrum pernix [TaxId:
56636]}
Length = 93
Score = 39.1 bits (91), Expect = 1e-04
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 125 EVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAV 162
V+V + A A+ +GA + +PGV+ +GDVVA
Sbjct: 3 VVLVDKGAAIALAKGAHLMIPGVVGVEGSFTRGDVVAA 40
>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus
horikoshii [TaxId: 53953]}
Length = 227
Score = 40.9 bits (95), Expect = 1e-04
Identities = 10/81 (12%), Positives = 28/81 (34%)
Query: 253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK 312
+ G+ +L + A G + ++ ++ EG++ ++ S + ++ + E
Sbjct: 65 GLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNI 124
Query: 313 CITTYKLDALKAVRRKNESND 333
+ R D
Sbjct: 125 VPILGDATKPEEYRALVPKVD 145
>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 324
Score = 41.3 bits (96), Expect = 2e-04
Identities = 9/84 (10%), Positives = 29/84 (34%)
Query: 255 HALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCI 314
+D G+ +L+ + GG + ++ + +G V++ + + +K
Sbjct: 92 SMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWK 151
Query: 315 TTYKLDALKAVRRKNESNDEPNMC 338
++ + V ++
Sbjct: 152 LSHVEEWPDNVDFIHKDISGATED 175
>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 309
Score = 40.9 bits (95), Expect = 2e-04
Identities = 12/104 (11%), Positives = 31/104 (29%), Gaps = 13/104 (12%)
Query: 383 GVERTYVSKADTRKNMRRMRNGPGRNQCLGGRAENSKG---FSPNSFDRVLLDAPCSALG 439
V+ + + ++N + + A +++D +L D P G
Sbjct: 159 HVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTDPPKFGRG 218
Query: 440 LRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTC 483
++ + M D +++ P + + T
Sbjct: 219 THGEVWQLF----------DHLPLMLDICREILSPKALGLVLTA 252
Score = 29.0 bits (64), Expect = 1.4
Identities = 14/80 (17%), Positives = 29/80 (36%), Gaps = 5/80 (6%)
Query: 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL--KCITTYK 318
+ ++L++ G + EV VD S + ++ GL I
Sbjct: 132 RPLKVLNLFGYTGVASLV---AAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWIC 188
Query: 319 LDALKAVRRKNESNDEPNMC 338
DA+K ++R+ ++
Sbjct: 189 EDAMKFIQREERRGSTYDII 208
>d1iq8a3 b.122.1.1 (A:506-582) Archaeosine tRNA-guanine
transglycosylase, C3 domain {Archaeon Pyrococcus
horikoshii [TaxId: 53953]}
Length = 77
Score = 36.7 bits (85), Expect = 5e-04
Identities = 9/41 (21%), Positives = 17/41 (41%)
Query: 122 PPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAV 162
P V+V+++ +G V+ V+ + D V V
Sbjct: 1 PRMRVVVNKEAEPFARKGKDVFAKFVIFADPGIRPYDEVLV 41
>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle
and C-terminal domains {Streptococcus mutans [TaxId:
1309]}
Length = 317
Score = 39.4 bits (91), Expect = 7e-04
Identities = 13/96 (13%), Positives = 35/96 (36%), Gaps = 14/96 (14%)
Query: 392 ADTRKNMRRMRNGPGRNQCLGGRAENSKGF---SPNSFDRVLLDAPCSALGLRPRLFAAE 448
A + + +Q + + + ++D +++D P A + +F+
Sbjct: 181 ALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIIIDPPSFARN-KKEVFSVS 239
Query: 449 ETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCT 484
K ++ Q ++++ G+I+ ST
Sbjct: 240 ----------KDYHKLIRQGLEILSENGLIIASTNA 265
>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852
{Thermoplasma acidophilum [TaxId: 2303]}
Length = 250
Score = 37.7 bits (87), Expect = 0.002
Identities = 10/55 (18%), Positives = 21/55 (38%)
Query: 255 HALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEM 309
+ G IL++ G ++ I L +G + V+R + + +E
Sbjct: 79 MRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEF 133
>d1r3ea1 b.122.1.1 (A:238-318) Pseudouridine synthase II TruB,
C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Length = 81
Score = 35.1 bits (81), Expect = 0.002
Identities = 12/99 (12%), Positives = 30/99 (30%), Gaps = 33/99 (33%)
Query: 126 VIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVL 185
V+V ++ + +L G+Q+++ + +KG+VV
Sbjct: 4 VVVHQESTKMILNGSQIHLEMLKEW-DGFKKGEVVR------------------------ 38
Query: 186 QGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVD 224
F G + A + + + + +
Sbjct: 39 --------VFNEEGRLLALAEAERNSSFLETLRKHERNE 69
>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT)
{Archaeon Methanobacterium thermoautotrophicum [TaxId:
145262]}
Length = 186
Score = 37.1 bits (85), Expect = 0.002
Identities = 25/154 (16%), Positives = 44/154 (28%), Gaps = 6/154 (3%)
Query: 252 VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL 311
+ +P K + +D+ GG T +A V A+DR+ + + GL
Sbjct: 24 LIMCLAEPGKNDVAVDVGCGTGGVTLELA---GRVRRVYAIDRNPEAISTTEMNLQRHGL 80
Query: 312 KCITTYKLDALKAVRRKNESNDEPNMCNSKDN-NYITSQTSDSMKLHKE--VPSIAAEGL 368
T K D + S I D +K V +I E
Sbjct: 81 GDNVTLMEGDAPEALCKIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAILLETK 140
Query: 369 NGDKSCKEKVSNEKGVERTYVSKADTRKNMRRMR 402
C + + + +++ M
Sbjct: 141 FEAMECLRDLGFDVNITELNIARGRALDRGTMMV 174
>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain
{Thermus aquaticus [TaxId: 271]}
Length = 223
Score = 36.2 bits (82), Expect = 0.005
Identities = 11/85 (12%), Positives = 19/85 (22%), Gaps = 2/85 (2%)
Query: 254 AHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAV--DRSHNKVMDIQKLAAEMGL 311
+ +G R+L+ A G A V V D + + L
Sbjct: 12 VSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPWAEGILADFL 71
Query: 312 KCITTYKLDALKAVRRKNESNDEPN 336
D + +
Sbjct: 72 LWEPGEAFDLILGNPPYGIVGEASK 96
>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase
domain {Thermotoga maritima [TaxId: 2336]}
Length = 192
Score = 35.1 bits (80), Expect = 0.008
Identities = 28/152 (18%), Positives = 53/152 (34%), Gaps = 11/152 (7%)
Query: 255 HALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCI 314
L P+ + ILD GG + AI ++ +D + ++ E +
Sbjct: 17 EFLKPEDEKIILDCTVGEGGHSRAILE-HCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVS 75
Query: 315 TT----YKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNG 370
+ D L E D M + + Y + ++ KE A + LN
Sbjct: 76 LFKVSYREADFLLK-TLGIEKVDGILM-DLGVSTYQLKGENRELENLKEFLKKAEDLLN- 132
Query: 371 DKSCKEKVSNEKGVERTYVSKADTRKNMRRMR 402
+ V + +E V + T +N +++R
Sbjct: 133 -PGGRIVVISFHSLEDRIVKE--TFRNSKKLR 161
>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga
maritima [TaxId: 2336]}
Length = 266
Score = 35.5 bits (81), Expect = 0.010
Identities = 16/69 (23%), Positives = 29/69 (42%)
Query: 254 AHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC 313
A LD ++G+RI+D G +A + G+V A ++ + + GL
Sbjct: 96 AMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIE 155
Query: 314 ITTYKLDAL 322
T K+ +
Sbjct: 156 RVTIKVRDI 164
>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis
[TaxId: 1423]}
Length = 234
Score = 34.9 bits (79), Expect = 0.012
Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 254 AHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
+ + R+LD+ A G A + + E + VD + V
Sbjct: 9 IKTAECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVE 52
>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 264
Score = 35.3 bits (81), Expect = 0.012
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 255 HALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRS 295
H D G R+L+ A G T ++ + G+V++ ++
Sbjct: 90 HEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQR 130
>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus
cereus [TaxId: 1396]}
Length = 281
Score = 35.2 bits (80), Expect = 0.012
Identities = 8/54 (14%), Positives = 16/54 (29%)
Query: 244 FLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHN 297
+ + S + K I+D G + LL + + +D
Sbjct: 10 YNDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGET 63
>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 239
Score = 35.0 bits (80), Expect = 0.014
Identities = 18/75 (24%), Positives = 27/75 (36%), Gaps = 6/75 (8%)
Query: 274 GKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYK-LDALKAVRRKNESN 332
GK+T L+ G + + +K AAE+G LD LKA R + +
Sbjct: 18 GKSTTTGHLIYKCGGI-----DKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITI 72
Query: 333 DEPNMCNSKDNNYIT 347
D +T
Sbjct: 73 DIALWKFETPKYQVT 87
>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella
flexneri [TaxId: 623]}
Length = 250
Score = 32.7 bits (74), Expect = 0.087
Identities = 8/46 (17%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Query: 251 IVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296
+ A + ++D A G +AS+ V ++R+
Sbjct: 78 VAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNP 120
>d2q07a1 b.122.1.1 (A:460-527) Uncharacterized protein AF0587
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 68
Score = 29.6 bits (67), Expect = 0.10
Identities = 14/92 (15%), Positives = 28/92 (30%), Gaps = 35/92 (38%)
Query: 134 EAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPY 193
+ ++G ++ GV+ + DVV
Sbjct: 7 DFEVKGT-IFAGGVLRADEKIRPNDVVVF------------------------------- 34
Query: 194 YFERSGLYIGQGTAMMSRAGIFRASEGIAVDM 225
+ G G A MS + + +GIA+++
Sbjct: 35 ---HNSRIFGVGLAAMSGKEMAGSEKGIAINV 63
>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 224
Score = 31.8 bits (71), Expect = 0.13
Identities = 13/83 (15%), Positives = 31/83 (37%)
Query: 257 LDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITT 316
+G + LD+ + G T A ++ G+V+ +D V D + +++
Sbjct: 72 DQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSS 131
Query: 317 YKLDALKAVRRKNESNDEPNMCN 339
++ + R + + P
Sbjct: 132 GRVQLVVGDGRMGYAEEAPYDAI 154
>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 260
Score = 31.7 bits (71), Expect = 0.15
Identities = 11/79 (13%), Positives = 30/79 (37%), Gaps = 3/79 (3%)
Query: 244 FLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQ 303
F A + E ++DM A G ++ + + +V+A+++ +
Sbjct: 90 FSPANVKERVRMAKVAKPDELVVDMFAGIGHL--SLPIAVYGKAKVIAIEKDPYTFKFLV 147
Query: 304 KLAAEMGLKC-ITTYKLDA 321
+ ++ ++ Y +D
Sbjct: 148 ENIHLNKVEDRMSAYNMDN 166
>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus
halodurans [TaxId: 86665]}
Length = 231
Score = 31.5 bits (70), Expect = 0.16
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 255 HALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
+ E +LD+ G A A + +VVA D + + +
Sbjct: 9 QIAALKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILK 51
>d1ztpa1 d.86.1.2 (A:17-250) Basophilic leukemia expressed protein
BLES03 {Human (Homo sapiens) [TaxId: 9606]}
Length = 234
Score = 31.4 bits (71), Expect = 0.17
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 294 RSHNKVMDIQKLAAEMGLKCITTYKLDA--LKAVRRKNESNDEPNMCNSKD 342
V++ G+KC+ TYK D + R N + P + S+
Sbjct: 164 TDRLGVLEADSAIRAAGIKCLLTYKPDVYTYLGIYRANRWHLCPTLYESRF 214
>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine
N-methyltransferase, PNMTase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 263
Score = 31.3 bits (70), Expect = 0.23
Identities = 9/74 (12%), Positives = 20/74 (27%), Gaps = 5/74 (6%)
Query: 235 FYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDR 294
G L+ L G ++D+ + P + S ++ D
Sbjct: 31 CNPNGVGPWKLRCLAQTFAT---GEVSGRTLIDIGSGPT--VYQLLSACSHFEDITMTDF 85
Query: 295 SHNKVMDIQKLAAE 308
++ + E
Sbjct: 86 LEVNRQELGRWLQE 99
>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 197
Score = 30.5 bits (68), Expect = 0.31
Identities = 9/70 (12%), Positives = 21/70 (30%), Gaps = 2/70 (2%)
Query: 251 IVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG 310
++ + G ++D G A S L V A D + + ++ +
Sbjct: 38 LIEIYNDGNIGGRSVIDAGTGNG--ILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVN 95
Query: 311 LKCITTYKLD 320
++
Sbjct: 96 FMVADVSEIS 105
>d1k7ja_ d.115.1.1 (A:) Hypothetical protein YciO {Escherichia coli
[TaxId: 562]}
Length = 206
Score = 29.9 bits (66), Expect = 0.46
Identities = 13/25 (52%), Positives = 20/25 (80%)
Query: 461 QRRMFDQAVQLVRPGGIIVYSTCTI 485
Q+R+ +QAV++VR GG+IVY T +
Sbjct: 13 QQRLINQAVEIVRKGGVIVYPTDSG 37
>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli
[TaxId: 562]}
Length = 245
Score = 30.3 bits (67), Expect = 0.46
Identities = 14/76 (18%), Positives = 23/76 (30%), Gaps = 6/76 (7%)
Query: 233 PSFYDVLEGEIFLQN--LPSIV--TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
P + + E E + N L + G RILD+ + G A
Sbjct: 1 PRIFTISESEHRIHNPFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWAR--DHGIT 58
Query: 289 VVAVDRSHNKVMDIQK 304
+D S ++
Sbjct: 59 GTGIDMSSLFTAQAKR 74
>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 229
Score = 29.6 bits (65), Expect = 0.63
Identities = 12/109 (11%), Positives = 31/109 (28%), Gaps = 3/109 (2%)
Query: 259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYK 318
KG R+L++ + + D E ++ + V + A + K
Sbjct: 51 SSKGGRVLEVGFGMAIAASKVQEAPID--EHWIIECNDG-VFQRLRDWAPRQTHKVIPLK 107
Query: 319 LDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEG 367
+ + + + ++ + T T + + G
Sbjct: 108 GLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPG 156
>g1n13.1 d.155.1.2 (A:,B:) Arginine decarboxylase {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 159
Score = 29.0 bits (65), Expect = 0.75
Identities = 7/34 (20%), Positives = 13/34 (38%)
Query: 144 VPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGL 177
VP G+ ++ +++V P GL
Sbjct: 67 VPTAYGYIISDVPGETISAAISVAIPKDKSLCGL 100
>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas
syringae [TaxId: 317]}
Length = 201
Score = 29.3 bits (64), Expect = 0.82
Identities = 9/55 (16%), Positives = 16/55 (29%), Gaps = 3/55 (5%)
Query: 255 HALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEM 309
+L+ G R+L + ++ VV + S V E
Sbjct: 14 SSLNVVPGARVLVPLCGKSQDMSWLS---GQGYHVVGAELSEAAVERYFTERGEQ 65
>d1jcua_ d.115.1.1 (A:) Hypothetical protein MTH1692 {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 208
Score = 28.8 bits (63), Expect = 1.3
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 461 QRRMFDQAVQLVRPGGIIVYSTCTI 485
+ ++A+ ++ GGI++Y T TI
Sbjct: 12 SPDVLEEAISVMEGGGIVIYPTDTI 36
>d1kdga2 d.16.1.1 (A:513-693) Flavoprotein domain of flavocytochrome
cellobiose dehydrogenase (CDH), substrate-binding domain
{Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}
Length = 181
Score = 28.6 bits (63), Expect = 1.4
Identities = 8/56 (14%), Positives = 13/56 (23%), Gaps = 2/56 (3%)
Query: 422 SPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQA--VQLVRPG 475
S R+ +DA L P L + ++ P
Sbjct: 101 GIQSRGRIGIDAALRGTVLTPPWLVNPVDKTVLLQALHDVVSNIGSIPGLTMITPD 156
>d1hrua_ d.115.1.1 (A:) Hypothetical protein YrdC {Escherichia coli
[TaxId: 562]}
Length = 186
Score = 28.4 bits (62), Expect = 1.7
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 461 QRRMFDQAVQLVRPGGIIVYSTCTI 485
QR A+ ++ +I Y T +
Sbjct: 4 QRDAIAAAIDVLNEERVIAYPTEAV 28
>d2p41a1 c.66.1.25 (A:8-264) An RNA cap
(nucleoside-2'-O-)-methyltransferase domain of RNA
polymerase NS5 {Dengue virus 2 [TaxId: 11060]}
Length = 257
Score = 27.6 bits (61), Expect = 3.4
Identities = 8/70 (11%), Positives = 22/70 (31%), Gaps = 9/70 (12%)
Query: 260 QKGERILDMCAAPGGKTTAIASLLRD---EGEVVAVDRSHNKVM------DIQKLAAEMG 310
+++D+ GG + L +G + ++ +L + +
Sbjct: 65 TPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVD 124
Query: 311 LKCITTYKLD 320
+ I + D
Sbjct: 125 VFFIPPERCD 134
>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase
domain {Thermus thermophilus [TaxId: 274]}
Length = 182
Score = 27.0 bits (59), Expect = 4.3
Identities = 9/45 (20%), Positives = 14/45 (31%), Gaps = 3/45 (6%)
Query: 256 ALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
L + G +D G I G V+ +D+ V
Sbjct: 13 LLAVRPGGVYVDATLGGAGHARGIL---ERGGRVIGLDQDPEAVA 54
>d1q5za_ a.196.1.1 (A:) Invasion protein A (SipA) , C-terminal actin
binding domain {Salmonella typhimurium [TaxId: 90371]}
Length = 145
Score = 26.5 bits (58), Expect = 4.5
Identities = 14/55 (25%), Positives = 26/55 (47%)
Query: 424 NSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGII 478
++ L A CS + P L A ET++ + H + ++ + A+Q R G+
Sbjct: 66 DTIKSAALKAQCSDIDKHPELKAKMETLKEVITHHPQKEKLAEIALQFAREAGLT 120
>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 125
Score = 26.3 bits (57), Expect = 5.3
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 8/35 (22%)
Query: 94 SQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIV 128
SQIPG + T D ++ ++ P ++
Sbjct: 1 SQIPGASLGI--------TSDGFFQLEELPGRSVI 27
>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter
oxydans [TaxId: 442]}
Length = 260
Score = 26.7 bits (58), Expect = 5.6
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 278 AIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
A A L +EG + +D + + + E G++ +Y D
Sbjct: 20 ATALRLAEEGTAIALLDMNREALEKAEASVREKGVEAR-SYVCD 62
>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli
[TaxId: 562]}
Length = 180
Score = 26.7 bits (58), Expect = 5.7
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVD 293
+ G ++D+ AAPGG + + + + +G ++A D
Sbjct: 21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACD 54
>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 341
Score = 27.0 bits (59), Expect = 6.2
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 274 GKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG 310
GK+T SL++ G + A + D +K E G
Sbjct: 29 GKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERG 65
>d2z15a1 d.370.1.1 (A:10-126) TOB1, N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 117
Score = 25.4 bits (56), Expect = 7.4
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 6/41 (14%)
Query: 40 TRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVAS 80
+ S + CI + D VI++ + SG DV
Sbjct: 50 YKGSGFRCIHIG---EKVDPVIEQ---ASKESGLDIDDVRG 84
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal
recognition particle receptor FtsY {Thermotoga maritima
[TaxId: 2336]}
Length = 213
Score = 25.9 bits (56), Expect = 9.3
Identities = 26/155 (16%), Positives = 49/155 (31%), Gaps = 18/155 (11%)
Query: 257 LDPQKGERILDMCAAPG-GKTTAIASL---LRDEGE----VVAVDRSHNKVMDIQKLAAE 308
+ P+ I+ + G GKTT+ L DEG+ A + ++
Sbjct: 6 VPPEPPFVIM-VVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGER 64
Query: 309 MGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGL 368
+G I+ + AV +++ + + T+ + K + E L
Sbjct: 65 VGATVISHSEGADPAAVAFDA-----VAHALARNKDVVIIDTAGRLHTKKNL----MEEL 115
Query: 369 NGDKSCKEKVSNEKGVERTYVSKADTRKNMRRMRN 403
+K + E V A T +N
Sbjct: 116 RKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAK 150
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.133 0.387
Gapped
Lambda K H
0.267 0.0654 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,768,030
Number of extensions: 81439
Number of successful extensions: 307
Number of sequences better than 10.0: 1
Number of HSP's gapped: 303
Number of HSP's successfully gapped: 59
Length of query: 495
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 406
Effective length of database: 1,185,626
Effective search space: 481364156
Effective search space used: 481364156
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.1 bits)