BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011037
(495 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GI8|C Chain C, Crystal Structure Of Apct K158a Transporter Bound To 7f11
Monoclonal Fab Fragment
Length = 444
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 69/346 (19%), Positives = 129/346 (37%), Gaps = 52/346 (15%)
Query: 76 QKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVXXXXXXXXXXXXXXFCYTEFA 135
K L+ W+ + G ++G+ IF I G AK AG + + YT+
Sbjct: 5 NKKLSLWEAVSMAVGVMIGASIFSIFGVGAKI-AGRNLPETFILSGIYALLVAYSYTKLG 63
Query: 136 VEIPVAGGSFSFLRVELGDFVAYIAAGNIXXXXXXXXXXXXRSWSSYLASMIDSNNSDLL 195
+I G +F+ +GD NI W SY+ S
Sbjct: 64 AKIVSNAGPIAFIHKAIGD--------NIITGALSILL-----WMSYVIS---------- 100
Query: 196 RFKVDCFADGF------------NLLDPVAVLILLVCNGIAMS--GTRRSSWLNWXXXXX 241
+ FA GF N + I +V A++ G++ +
Sbjct: 101 ---IALFAKGFAGYFLPLINAPINTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLV 157
Query: 242 XXXXXXXXXXXGFVHGKTTNLDPFL-PYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKP 300
G + + + P L P G+ A+A+ + SY GF ++ +E + P
Sbjct: 158 ALLILGLFIFAGLITIHPSYVIPDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENP 217
Query: 301 SRDIPIGLVGSMCMITAVYCLMA------LALTMMVKYTEIDMNAAYSIAFRQIGMNWAK 354
+++P + S+ ++ VY +A L + ++K +E A ++A + N
Sbjct: 218 KKNVPRAIFISILIVMFVYVGVAISAIGNLPIDELIKASE----NALAVAAKPFLGNLGF 273
Query: 355 YLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPPWHNSILEFK 400
L+S+ AL +++++ G A +A+ +P + + FK
Sbjct: 274 LLISIGALFSISSAMNATIYGGANVAYSLAKDGELPEFFERKVWFK 319
>pdb|3GI9|C Chain C, Crystal Structure Of Apct Transporter Bound To 7f11
Monoclonal Fab Fragment
pdb|3GIA|A Chain A, Crystal Structure Of Apct Transporter
Length = 444
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 69/346 (19%), Positives = 129/346 (37%), Gaps = 52/346 (15%)
Query: 76 QKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVXXXXXXXXXXXXXXFCYTEFA 135
K L+ W+ + G ++G+ IF I G AK AG + + YT+
Sbjct: 5 NKKLSLWEAVSMAVGVMIGASIFSIFGVGAKI-AGRNLPETFILSGIYALLVAYSYTKLG 63
Query: 136 VEIPVAGGSFSFLRVELGDFVAYIAAGNIXXXXXXXXXXXXRSWSSYLASMIDSNNSDLL 195
+I G +F+ +GD NI W SY+ S
Sbjct: 64 AKIVSNAGPIAFIHKAIGD--------NIITGALSILL-----WMSYVIS---------- 100
Query: 196 RFKVDCFADGF------------NLLDPVAVLILLVCNGIAMS--GTRRSSWLNWXXXXX 241
+ FA GF N + I +V A++ G++ +
Sbjct: 101 ---IALFAKGFAGYFLPLINAPINTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLV 157
Query: 242 XXXXXXXXXXXGFVHGKTTNLDPFL-PYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKP 300
G + + + P L P G+ A+A+ + SY GF ++ +E + P
Sbjct: 158 KLLILGLFIFAGLITIHPSYVIPDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENP 217
Query: 301 SRDIPIGLVGSMCMITAVYCLMA------LALTMMVKYTEIDMNAAYSIAFRQIGMNWAK 354
+++P + S+ ++ VY +A L + ++K +E A ++A + N
Sbjct: 218 KKNVPRAIFISILIVMFVYVGVAISAIGNLPIDELIKASE----NALAVAAKPFLGNLGF 273
Query: 355 YLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPPWHNSILEFK 400
L+S+ AL +++++ G A +A+ +P + + FK
Sbjct: 274 LLISIGALFSISSAMNATIYGGANVAYSLAKDGELPEFFERKVWFK 319
>pdb|3L1L|A Chain A, Structure Of Arg-Bound Escherichia Coli Adic
Length = 445
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 2/125 (1%)
Query: 269 GTEGVFEAAA-VVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALT 327
GT G ++ V WS+ G + + A K P R++PI +G + + Y L A+
Sbjct: 188 GTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIM 247
Query: 328 MMVKYTEIDMNAA-YSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARA 386
M+ + ++A+ + A R + A +VS CA G SL +L + A
Sbjct: 248 GMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADD 307
Query: 387 HMIPP 391
+ PP
Sbjct: 308 GLFPP 312
>pdb|3LRB|A Chain A, Structure Of E. Coli Adic
pdb|3LRB|B Chain B, Structure Of E. Coli Adic
pdb|3LRC|A Chain A, Structure Of E. Coli Adic (P1)
pdb|3LRC|B Chain B, Structure Of E. Coli Adic (P1)
pdb|3LRC|C Chain C, Structure Of E. Coli Adic (P1)
pdb|3LRC|D Chain D, Structure Of E. Coli Adic (P1)
Length = 445
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 2/125 (1%)
Query: 269 GTEGVFEAAA-VVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALT 327
GT G ++ V WS+ G + + A K P R++PI +G + + Y L A+
Sbjct: 188 GTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIM 247
Query: 328 MMVKYTEIDMNAA-YSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARA 386
M+ + ++A+ + A R + A +VS CA G SL +L + A
Sbjct: 248 GMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADD 307
Query: 387 HMIPP 391
+ PP
Sbjct: 308 GLFPP 312
>pdb|3OB6|A Chain A, Structure Of Adic(N101a) In The Open-To-Out Arg+ Bound
Conformation
pdb|3OB6|B Chain B, Structure Of Adic(N101a) In The Open-To-Out Arg+ Bound
Conformation
Length = 445
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 2/125 (1%)
Query: 269 GTEGVFEAAA-VVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALT 327
GT G ++ V WS+ G + + A K P R++PI +G + + Y L A+
Sbjct: 188 GTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIM 247
Query: 328 MMVKYTEIDMNAA-YSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARA 386
M+ + ++A+ + A R + A +VS CA G SL +L + A
Sbjct: 248 GMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADD 307
Query: 387 HMIPP 391
+ PP
Sbjct: 308 GLFPP 312
>pdb|3NCY|A Chain A, X-Ray Crystal Structure Of An Arginine Agmatine Antiporter
(Adic) In Complex With A Fab Fragment
pdb|3NCY|B Chain B, X-Ray Crystal Structure Of An Arginine Agmatine Antiporter
(Adic) In Complex With A Fab Fragment
pdb|3NCY|C Chain C, X-Ray Crystal Structure Of An Arginine Agmatine Antiporter
(Adic) In Complex With A Fab Fragment
pdb|3NCY|D Chain D, X-Ray Crystal Structure Of An Arginine Agmatine Antiporter
(Adic) In Complex With A Fab Fragment
Length = 445
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 1/114 (0%)
Query: 279 VVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMN 338
V WS+ G + + A K P R++PI +G + + Y L A+ M+ + ++
Sbjct: 199 VTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVS 258
Query: 339 AA-YSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPP 391
A+ + A R + A +VS CA G SL +L + A + PP
Sbjct: 259 ASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPP 312
>pdb|4DJI|A Chain A, Structure Of Glutamate-Gaba Antiporter Gadc
pdb|4DJI|B Chain B, Structure Of Glutamate-Gaba Antiporter Gadc
pdb|4DJK|A Chain A, Structure Of Glutamate-Gaba Antiporter Gadc
pdb|4DJK|B Chain B, Structure Of Glutamate-Gaba Antiporter Gadc
Length = 511
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 55/117 (47%), Gaps = 12/117 (10%)
Query: 283 SYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMA---LALTMMVKYTEIDMNA 339
SY G + AT E P RD P+ + + ++ A CL + L++ M++ EI+++A
Sbjct: 213 SYMGVEASATHVNEMSNPGRDYPLAM---LLLMVAAICLSSVGGLSIAMVIPGNEINLSA 269
Query: 340 A----YSIAFRQIG--MNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIP 390
+++ + + W ++S L G+ + +G +R A+ +++P
Sbjct: 270 GVMQTFTVLMSHVAPEIEWTVRVISALLLLGVLAEIASWIVGPSRGMYVTAQKNLLP 326
>pdb|2WB8|A Chain A, Crystal Structure Of Haspin Kinase
Length = 352
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 30/70 (42%), Gaps = 11/70 (15%)
Query: 423 IAPETTCSKTLGSSSGSMVAIIVNCNEFISHRLIGLFGIFEVHHLQCSNACLLLVSWPSC 482
I PE SK L SG + CN R G G+ VH +Q S LLL +W
Sbjct: 86 ILPEIIISKELSLLSGEV------CN-----RTEGFIGLNSVHCVQGSYPPLLLKAWDHY 134
Query: 483 NLRCGSSEPR 492
N GS+ R
Sbjct: 135 NSTKGSANDR 144
>pdb|3DLZ|A Chain A, Crystal Structure Of Human Haspin In Complex With Amp
pdb|3E7V|A Chain A, Crystal Structure Of Human Haspin With A
Pyrazolo-Pyrimidine Ligand
pdb|3F2N|A Chain A, Crystal Structure Of Human Haspin With An
Imidazo-Pyridazine Ligand
pdb|3FMD|A Chain A, Crystal Structure Of Human Haspin With An Isoquinoline
Ligand
pdb|3IQ7|A Chain A, Crystal Structure Of Human Haspin In Complex With
5-Iodotubercidin
Length = 357
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 30/70 (42%), Gaps = 11/70 (15%)
Query: 423 IAPETTCSKTLGSSSGSMVAIIVNCNEFISHRLIGLFGIFEVHHLQCSNACLLLVSWPSC 482
I PE SK L SG + CN R G G+ VH +Q S LLL +W
Sbjct: 91 ILPEIIISKELSLLSGEV------CN-----RTEGFIGLNSVHCVQGSYPPLLLKAWDHY 139
Query: 483 NLRCGSSEPR 492
N GS+ R
Sbjct: 140 NSTKGSANDR 149
>pdb|3SYL|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
pdb|3SYL|B Chain B, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
Length = 309
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 30 EPSFENTTSYKSALKQTYPRLKNRLFSRST---DATELITLQQES 71
+P F N S ++AL + R NRLF+ S+ DA L T+ +E
Sbjct: 242 QPHFANARSIRNALDRARLRQANRLFTASSGPLDARALSTIAEED 286
>pdb|3ZUH|A Chain A, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|B Chain B, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|C Chain C, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|D Chain D, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|E Chain E, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|F Chain F, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
Length = 289
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 30 EPSFENTTSYKSALKQTYPRLKNRLFSRST---DATELITLQQES 71
+P F N S ++AL + R NRLF+ S+ DA L T+ +E
Sbjct: 235 QPHFANARSIRNALDRARLRQANRLFTASSGPLDARALSTIAEED 279
>pdb|2VUW|A Chain A, Structure Of Human Haspin Kinase Domain
Length = 336
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 30/70 (42%), Gaps = 11/70 (15%)
Query: 423 IAPETTCSKTLGSSSGSMVAIIVNCNEFISHRLIGLFGIFEVHHLQCSNACLLLVSWPSC 482
I PE SK L SG + CN R G G+ VH +Q S LLL +W
Sbjct: 70 ILPEIIISKELSLLSGEV------CN-----RTEGFIGLNSVHCVQGSYPPLLLKAWDHY 118
Query: 483 NLRCGSSEPR 492
N GS+ R
Sbjct: 119 NSTKGSANDR 128
>pdb|3SYK|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx,
Selenomethionine Structure
pdb|3SYK|B Chain B, Crystal Structure Of The Aaa+ Protein Cbbx,
Selenomethionine Structure
Length = 309
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 30 EPSFENTTSYKSALKQTYPRLKNRLFSRST---DATELITLQQES 71
+P F N S ++AL + R NRLF+ S+ DA L T+ +E
Sbjct: 242 QPHFANARSIRNALDRARLRQANRLFTASSGPLDARALSTIAEED 286
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.135 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,436,454
Number of Sequences: 62578
Number of extensions: 481575
Number of successful extensions: 1002
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 987
Number of HSP's gapped (non-prelim): 17
length of query: 495
length of database: 14,973,337
effective HSP length: 103
effective length of query: 392
effective length of database: 8,527,803
effective search space: 3342898776
effective search space used: 3342898776
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)