Query 011037
Match_columns 495
No_of_seqs 235 out of 2732
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 07:24:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011037.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011037hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00906 2A0303 cationic amin 100.0 3E-52 6.5E-57 435.0 40.7 374 72-455 23-410 (557)
2 PRK15049 L-asparagine permease 100.0 3.9E-50 8.4E-55 415.4 38.5 366 73-454 24-404 (499)
3 PRK11387 S-methylmethionine tr 100.0 8.9E-50 1.9E-54 411.9 36.0 323 73-413 10-349 (471)
4 PRK10249 phenylalanine transpo 100.0 1.1E-49 2.4E-54 409.1 36.1 331 71-419 15-358 (458)
5 PRK10238 aromatic amino acid t 100.0 3.1E-49 6.7E-54 405.6 36.8 331 71-419 6-349 (456)
6 PRK10746 putative transport pr 100.0 1E-48 2.2E-53 401.6 37.0 322 71-410 4-340 (461)
7 TIGR01773 GABAperm gamma-amino 100.0 1.6E-48 3.6E-53 401.1 35.7 330 72-419 7-351 (452)
8 COG1113 AnsP Gamma-aminobutyra 100.0 8.4E-49 1.8E-53 378.1 29.2 365 71-454 7-387 (462)
9 PRK11049 D-alanine/D-serine/gl 100.0 8E-48 1.7E-52 396.8 37.0 325 72-414 15-355 (469)
10 PRK10836 lysine transporter; P 100.0 7.6E-48 1.6E-52 399.0 36.2 330 71-418 9-361 (489)
11 PRK10655 potE putrescine trans 100.0 9.2E-48 2E-52 394.2 34.6 329 75-418 4-337 (438)
12 COG0833 LysP Amino acid transp 100.0 1.7E-48 3.7E-53 383.6 26.9 371 74-461 41-472 (541)
13 PRK10644 arginine:agmatin anti 100.0 2.8E-47 6E-52 391.0 36.7 331 73-418 4-339 (445)
14 PRK10580 proY putative proline 100.0 5.6E-47 1.2E-51 389.8 37.0 325 71-413 3-342 (457)
15 TIGR00909 2A0306 amino acid tr 100.0 7.9E-47 1.7E-51 386.8 37.2 384 75-492 1-388 (429)
16 KOG1286 Amino acid transporter 100.0 2.4E-48 5.2E-53 396.9 24.3 368 73-443 26-410 (554)
17 TIGR00908 2A0305 ethanolamine 100.0 2E-46 4.3E-51 384.8 37.2 372 72-492 2-385 (442)
18 PRK10435 cadB lysine/cadaverin 100.0 3.7E-46 8E-51 381.1 36.1 361 75-451 3-374 (435)
19 PRK11357 frlA putative fructos 100.0 1E-45 2.3E-50 379.5 39.5 331 72-417 3-345 (445)
20 TIGR00911 2A0308 L-type amino 100.0 6.4E-46 1.4E-50 386.4 38.1 378 71-492 36-427 (501)
21 TIGR00913 2A0310 amino acid pe 100.0 3.4E-46 7.4E-51 386.8 35.5 322 76-415 1-351 (478)
22 KOG1287 Amino acid transporter 100.0 4.7E-47 1E-51 372.4 26.2 378 71-492 6-396 (479)
23 PRK10197 gamma-aminobutyrate t 100.0 7.7E-46 1.7E-50 379.4 34.4 314 87-418 2-330 (446)
24 TIGR00905 2A0302 transporter, 100.0 2.4E-45 5.2E-50 379.1 36.3 366 75-454 5-382 (473)
25 PRK11021 putative transporter; 100.0 1E-44 2.2E-49 368.3 38.3 354 79-451 1-357 (410)
26 TIGR03428 ureacarb_perm permea 100.0 1.7E-44 3.8E-49 372.9 37.9 378 70-455 6-401 (475)
27 KOG1289 Amino acid transporter 100.0 3E-44 6.5E-49 352.6 31.4 354 58-423 31-412 (550)
28 TIGR03810 arg_ornith_anti argi 100.0 1.3E-43 2.7E-48 365.8 34.9 328 77-417 1-342 (468)
29 TIGR00930 2a30 K-Cl cotranspor 100.0 2.2E-42 4.8E-47 375.5 39.9 366 73-452 72-482 (953)
30 TIGR00907 2A0304 amino acid pe 100.0 1.2E-42 2.7E-47 360.4 35.6 342 70-419 5-373 (482)
31 PF13520 AA_permease_2: Amino 100.0 2.1E-42 4.6E-47 354.1 31.5 325 79-419 1-338 (426)
32 TIGR03813 put_Glu_GABA_T putat 100.0 2.6E-40 5.6E-45 341.9 34.9 331 77-419 1-346 (474)
33 COG0531 PotE Amino acid transp 100.0 4.8E-40 1E-44 340.9 36.3 333 71-414 6-348 (466)
34 TIGR00910 2A0307_GadC glutamat 100.0 1.6E-39 3.4E-44 336.7 34.3 329 76-419 3-348 (507)
35 PF00324 AA_permease: Amino ac 100.0 5.8E-42 1.3E-46 355.0 7.2 323 84-417 2-353 (478)
36 PRK15238 inner membrane transp 100.0 1.4E-37 3E-42 323.0 35.5 335 75-417 5-380 (496)
37 TIGR00837 araaP aromatic amino 100.0 7.7E-27 1.7E-31 235.2 28.6 311 86-419 4-325 (381)
38 TIGR00912 2A0309 spore germina 99.9 1.3E-22 2.9E-27 202.7 33.6 286 77-381 1-293 (359)
39 KOG2082 K+/Cl- cotransporter K 99.9 6.4E-24 1.4E-28 212.3 16.7 335 75-416 110-560 (1075)
40 KOG1288 Amino acid transporter 99.9 1.8E-23 4E-28 207.6 16.8 326 75-408 62-429 (945)
41 PHA02764 hypothetical protein; 99.9 3.2E-20 7E-25 169.7 20.3 274 71-399 6-282 (399)
42 TIGR00814 stp serine transport 99.8 1.9E-17 4.1E-22 165.2 31.3 288 83-386 7-313 (397)
43 KOG2083 Na+/K+ symporter [Inor 99.8 5.5E-19 1.2E-23 174.9 16.6 322 76-413 27-378 (643)
44 TIGR00796 livcs branched-chain 99.8 8.6E-17 1.9E-21 158.3 31.1 286 88-409 4-311 (378)
45 PF03222 Trp_Tyr_perm: Tryptop 99.8 1.4E-15 3E-20 152.2 35.3 291 77-381 1-302 (394)
46 PF03845 Spore_permease: Spore 99.8 2E-15 4.3E-20 148.3 32.3 286 78-383 1-291 (320)
47 PRK13629 threonine/serine tran 99.7 2.2E-13 4.8E-18 135.1 32.4 288 86-386 26-348 (443)
48 COG0814 SdaC Amino acid permea 99.7 1.8E-13 3.9E-18 138.1 32.3 285 74-371 4-302 (415)
49 PRK15132 tyrosine transporter 99.7 2.7E-13 5.9E-18 135.2 32.5 291 80-385 4-303 (403)
50 PRK10483 tryptophan permease; 99.7 2.3E-13 5.1E-18 135.0 31.7 295 74-383 6-312 (414)
51 PRK09664 tryptophan permease T 99.7 2.5E-13 5.3E-18 134.7 31.4 289 80-382 10-312 (415)
52 PF01235 Na_Ala_symp: Sodium:a 99.3 1.4E-09 2.9E-14 107.8 25.5 293 72-384 12-338 (416)
53 TIGR00835 agcS amino acid carr 99.2 1.6E-08 3.5E-13 100.8 27.7 286 77-383 45-364 (425)
54 COG1115 AlsT Na+/alanine sympo 99.2 2.1E-08 4.6E-13 98.3 27.6 291 74-384 58-382 (452)
55 KOG1303 Amino acid transporter 99.2 1E-08 2.2E-13 103.1 25.5 280 74-372 33-323 (437)
56 PTZ00206 amino acid transporte 99.2 1.8E-07 4E-12 96.4 33.8 244 80-333 61-319 (467)
57 PLN03074 auxin influx permease 99.1 9.8E-08 2.1E-12 98.1 30.1 237 77-332 44-293 (473)
58 KOG1304 Amino acid transporter 99.1 1.3E-07 2.7E-12 93.9 26.2 282 77-382 45-348 (449)
59 COG3949 Uncharacterized membra 99.0 2.8E-06 6E-11 80.1 28.9 265 85-375 9-280 (349)
60 PRK11375 allantoin permease; P 98.9 4.4E-06 9.5E-11 86.4 33.0 309 73-393 21-345 (484)
61 PF01490 Aa_trans: Transmembra 98.6 4.1E-09 8.9E-14 107.4 -0.9 289 77-385 1-303 (409)
62 COG1953 FUI1 Cytosine/uracil/t 98.5 0.00014 3.1E-09 72.9 27.4 314 72-394 34-360 (497)
63 PRK09442 panF sodium/panthothe 98.5 0.0012 2.6E-08 68.8 35.4 287 76-386 40-350 (483)
64 COG1457 CodB Purine-cytosine p 98.5 0.00046 1E-08 69.2 30.2 238 113-378 54-295 (442)
65 TIGR00813 sss transporter, SSS 98.4 0.00076 1.6E-08 68.7 31.5 288 76-386 2-325 (407)
66 TIGR00800 ncs1 NCS1 nucleoside 98.4 0.003 6.4E-08 65.0 35.1 238 73-318 8-254 (442)
67 TIGR02119 panF sodium/pantothe 98.4 0.0013 2.9E-08 68.2 32.7 287 76-386 39-349 (471)
68 PF00474 SSF: Sodium:solute sy 98.3 0.00017 3.7E-09 73.5 23.4 288 76-386 5-323 (406)
69 TIGR02121 Na_Pro_sym sodium/pr 98.3 0.0039 8.5E-08 65.0 32.7 286 76-386 35-349 (487)
70 PRK11017 codB cytosine permeas 98.3 0.007 1.5E-07 61.4 33.9 215 76-314 8-226 (404)
71 PF05525 Branch_AA_trans: Bran 98.2 0.0036 7.8E-08 63.0 28.3 272 90-383 14-305 (427)
72 PRK15419 proline:sodium sympor 98.2 0.011 2.5E-07 61.8 33.2 287 76-386 39-356 (502)
73 PRK12488 acetate permease; Pro 98.1 0.019 4.1E-07 60.8 35.0 225 76-321 66-310 (549)
74 COG0733 Na+-dependent transpor 98.1 0.0032 6.9E-08 62.7 26.2 289 78-374 7-321 (439)
75 COG0591 PutP Na+/proline sympo 98.1 0.017 3.7E-07 60.1 32.9 281 76-379 37-352 (493)
76 TIGR02711 symport_actP cation/ 98.0 0.035 7.5E-07 58.8 35.1 281 76-377 66-379 (549)
77 PRK10484 putative transporter; 98.0 0.037 8E-07 58.3 35.1 296 76-386 37-358 (523)
78 TIGR03648 Na_symport_lg probab 97.9 0.029 6.3E-07 59.5 31.7 148 76-245 31-182 (552)
79 PRK15433 branched-chain amino 97.9 0.026 5.7E-07 56.9 28.8 273 90-383 19-309 (439)
80 PF01566 Nramp: Natural resist 97.9 0.027 5.9E-07 56.2 29.0 251 110-384 12-285 (358)
81 COG1114 BrnQ Branched-chain am 97.8 0.03 6.6E-07 55.1 26.9 272 85-379 11-303 (431)
82 PRK09395 actP acetate permease 97.7 0.089 1.9E-06 55.8 36.7 153 76-248 68-222 (551)
83 PF02133 Transp_cyt_pur: Perme 97.7 0.0058 1.3E-07 62.9 21.4 172 75-251 5-179 (440)
84 KOG1305 Amino acid transporter 97.7 0.0026 5.6E-08 64.0 17.8 249 76-333 3-257 (411)
85 TIGR02358 thia_cytX probable h 97.6 0.093 2E-06 52.9 34.8 244 113-383 31-275 (386)
86 PRK00701 manganese transport p 97.6 0.12 2.7E-06 52.8 30.3 76 109-188 63-140 (439)
87 COG4147 DhlC Predicted symport 97.2 0.31 6.7E-06 49.0 24.8 243 113-376 79-367 (529)
88 PF02028 BCCT: BCCT family tra 97.1 0.41 8.9E-06 49.4 31.4 302 75-387 71-424 (485)
89 COG1914 MntH Mn2+ and Fe2+ tra 96.7 0.77 1.7E-05 46.4 30.1 115 122-256 55-171 (416)
90 PLN00151 potassium transporter 96.3 0.78 1.7E-05 49.5 21.1 191 209-415 274-485 (852)
91 KOG2466 Uridine permease/thiam 96.2 0.34 7.3E-06 48.7 16.9 302 73-394 50-380 (572)
92 COG1292 BetT Choline-glycine b 94.9 5.3 0.00012 41.2 24.5 45 343-387 393-437 (537)
93 KOG4303 Vesicular inhibitory a 94.1 0.85 1.8E-05 43.9 11.7 165 74-255 112-285 (524)
94 COG4145 PanF Na+/panthothenate 93.9 7.1 0.00015 38.3 29.8 243 116-377 73-342 (473)
95 PLN00150 potassium ion transpo 92.8 15 0.00031 40.1 19.5 191 209-414 214-424 (779)
96 PLN00149 potassium transporter 92.2 20 0.00044 39.1 22.4 194 210-415 199-412 (779)
97 PRK09950 putative transporter; 92.0 18 0.00038 37.8 29.3 23 76-98 81-103 (506)
98 PRK09928 choline transport pro 91.3 24 0.00052 38.0 28.9 23 76-98 90-112 (679)
99 COG1966 CstA Carbon starvation 89.7 21 0.00046 37.0 16.3 104 79-183 52-155 (575)
100 PF00209 SNF: Sodium:neurotran 89.5 31 0.00067 36.4 26.9 99 221-322 192-300 (523)
101 PF02554 CstA: Carbon starvati 88.9 22 0.00047 35.2 15.2 103 79-183 52-155 (376)
102 PLN00148 potassium transporter 88.8 18 0.00039 39.4 15.8 192 209-415 197-408 (785)
103 TIGR00794 kup potassium uptake 87.7 14 0.00031 39.7 14.2 190 209-413 168-377 (688)
104 KOG3659 Sodium-neurotransmitte 87.6 40 0.00087 35.4 21.5 115 210-325 255-377 (629)
105 TIGR01197 nramp NRAMP (natural 86.2 40 0.00087 34.0 33.6 42 341-382 282-323 (390)
106 PRK03356 L-carnitine/gamma-but 83.2 63 0.0014 33.8 28.3 23 76-98 83-105 (504)
107 PF02705 K_trans: K+ potassium 82.7 67 0.0014 33.7 20.3 191 209-414 132-341 (534)
108 TIGR00842 bcct choline/carniti 73.6 1.2E+02 0.0025 31.4 29.3 22 76-97 34-55 (453)
109 KOG2349 Na+:iodide/myo-inosito 70.6 55 0.0012 34.7 11.5 222 142-383 108-363 (585)
110 PRK10745 trkD potassium transp 63.8 2.1E+02 0.0046 30.6 17.9 190 209-413 143-351 (622)
111 KOG3660 Sodium-neurotransmitte 60.6 2.5E+02 0.0054 30.4 21.2 60 80-139 39-102 (629)
112 PTZ00206 amino acid transporte 57.0 96 0.0021 32.2 10.6 56 339-394 121-176 (467)
113 COG4146 Predicted symporter [G 49.8 2.8E+02 0.006 27.7 17.7 233 144-393 105-365 (571)
114 TIGR01299 synapt_SV2 synaptic 33.4 7.1E+02 0.015 27.7 17.2 15 147-161 224-238 (742)
115 PRK00968 tetrahydromethanopter 31.1 65 0.0014 29.0 3.7 32 294-325 204-236 (240)
116 PF11998 DUF3493: Protein of u 30.1 2.3E+02 0.005 21.0 7.4 41 288-328 4-44 (75)
117 PRK15433 branched-chain amino 28.3 6.7E+02 0.015 25.8 15.2 72 146-235 269-340 (439)
118 PF11174 DUF2970: Protein of u 27.7 1.7E+02 0.0037 20.3 4.6 25 275-299 3-27 (56)
119 PF03806 ABG_transport: AbgT p 25.9 7.8E+02 0.017 25.8 11.5 96 120-234 303-404 (502)
120 COG4060 MtrD Tetrahydromethano 25.3 90 0.002 27.0 3.4 32 294-325 194-226 (230)
121 PF03806 ABG_transport: AbgT p 25.1 8.1E+02 0.018 25.7 13.3 84 277-362 302-389 (502)
122 PF12666 PrgI: PrgI family pro 20.9 3E+02 0.0065 21.0 5.5 30 72-101 10-39 (93)
No 1
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=100.00 E-value=3e-52 Score=434.95 Aligned_cols=374 Identities=36% Similarity=0.619 Sum_probs=320.0
Q ss_pred CccccccCCHhHHHHHHhhhhhhhhhhhccHHhHHhccChHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHhHHHH
Q 011037 72 KQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVE 151 (495)
Q Consensus 72 ~~~l~r~l~~~~~~~l~~~~~ig~g~~~~~~~~~~~~~G~~~~~~~li~~~~~~~~~~~~ael~s~~P~~Gg~y~~~~~~ 151 (495)
+++++|+++.+|+++++++.++|+|+|..++......+||+.+++|+++++.+++.+++|+|+++++|++||.|.|+++.
T Consensus 23 ~~~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~~~ls~liagv~~l~~al~yaElas~~P~sGg~Y~y~~~~ 102 (557)
T TIGR00906 23 ESKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPAIVLSFLISGLAAVLSGFCYAEFGARVPKAGSAYLYSYVT 102 (557)
T ss_pred ccchhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeeHHHH
Confidence 44689999999999999999999999999998775558999999999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccc-----ccccccCCCCCchhHHHHHHHHHHHHHHhh
Q 011037 152 LGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLR-----FKVDCFADGFNLLDPVAVLILLVCNGIAMS 226 (495)
Q Consensus 152 ~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 226 (495)
+|+.+||++||.+++.|....+..+..++.|+..++.. .-..+. ...+... ....+++++++++++.+|.+
T Consensus 103 ~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~-~~~~~~~~~~~~~~~~l~---~~~~~~a~~ii~l~~~ln~~ 178 (557)
T TIGR00906 103 VGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNK-QIGQFRRTYFKLNYDGLA---EYPDFFAVCLILLLAVLLSF 178 (557)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hccccccccccccCCccc---ccchHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999998887651 111111 0001110 12346777888889999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhheeccccCCCC--------CCCCCChhhHHHHHHHHHHHhhchhHHHHhhhhhc
Q 011037 227 GTRRSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLD--------PFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETK 298 (495)
Q Consensus 227 g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k 298 (495)
|+|..+|++++++.++++.++++++.++.+.+.+|+. ++.|.++.+++.++...+|+|.|+|.+++++||+|
T Consensus 179 Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~k 258 (557)
T TIGR00906 179 GVKESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEVK 258 (557)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhcc
Confidence 9999999999999999999888888888776666654 56677888999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccccccccHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhchhH
Q 011037 299 KPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQAR 378 (495)
Q Consensus 299 ~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~sR 378 (495)
||+||+||+++.++.+++++|++.+++.....|+++++.++|+..+++..+.++...++.++.+++.+++.++.+++.+|
T Consensus 259 nP~r~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~g~~~~~~ii~~~~~~~~~~sl~~~~~~~sR 338 (557)
T TIGR00906 259 NPQRAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVGWGPAKYIVAVGALCGMSTSLLGGMFPLPR 338 (557)
T ss_pred CccccccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998888788999999988888899999999999999999999999999
Q ss_pred HHHHHHhcCCCchhhhcccCccccch-hHHHHHHHHHHHHHhhcCcCcccccccccchhHHHHHHHHHHHHHHHHhHH
Q 011037 379 YTTQIARAHMIPPWHNSILEFKWKRM-DWLCGNHCTLVFGDFRNGIAPETTCSKTLGSSSGSMVAIIVNCNEFISHRL 455 (495)
Q Consensus 379 ~l~~~ardg~lP~~~~~~~~~~~p~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (495)
++|+|||||.+|++|+|+|||+++|+ +.++..++..++..+.. ......+.+++.++.|.+.++.++..|+
T Consensus 339 il~amarDGlLP~~fakv~~r~~tP~~Ail~~~iv~~il~~~~~------~~~l~~l~sig~ll~y~lv~~~~l~lR~ 410 (557)
T TIGR00906 339 VIYAMARDGLLFKWLAQINSKTKTPINATVVSGAIAALMAFLFD------LKALVDLLSIGTLLAYSLVAACVLILRY 410 (557)
T ss_pred HHHHHHcCCCccHHHhccCCCCCCcHHHHHHHHHHHHHHHHHcC------HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999998876655 66666666655544321 2234445678888999888888877774
No 2
>PRK15049 L-asparagine permease; Provisional
Probab=100.00 E-value=3.9e-50 Score=415.42 Aligned_cols=366 Identities=18% Similarity=0.240 Sum_probs=299.9
Q ss_pred ccccccCCHhHHHHHHhhhhhhhhhhhccHHhHHhccChHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHhHHHHh
Q 011037 73 QPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVEL 152 (495)
Q Consensus 73 ~~l~r~l~~~~~~~l~~~~~ig~g~~~~~~~~~~~~~G~~~~~~~li~~~~~~~~~~~~ael~s~~P~~Gg~y~~~~~~~ 152 (495)
+++||+++.+++.++++++++|+|+|..++..+.. +||..+++|++++++.++.+.+++||++++|++||.|.|+++.+
T Consensus 24 ~~l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~-aGp~~il~~li~~i~~~~v~~slaELas~~P~aGg~y~y~~~~~ 102 (499)
T PRK15049 24 EGYHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQM-AGPALALVYLICGLFSFFILRALGELVLHRPSSGSFVSYAREFL 102 (499)
T ss_pred hhhhccCCHhHhHHHhhhccccchHHHhhHHHHHh-cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHh
Confidence 45899999999999999999999999999999988 99998899999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhhH
Q 011037 153 GDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSS 232 (495)
Q Consensus 153 g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~ 232 (495)
||.+||++||.+|++|+...+......+.+...+-. + ++.+ .+++..+++++++.+|++|+|..+
T Consensus 103 G~~~gf~~GW~~~l~~~~~~~~~~~a~~~~~~~~~~------~----~~~~-----~~~~~~~~~~l~~~iN~~gvk~~~ 167 (499)
T PRK15049 103 GEKAAYVAGWMYFINWAMTGIVDITAVALYMHYWGA------F----GGVP-----QWVFALAALTIVGTMNMIGVKWFA 167 (499)
T ss_pred CcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------C----CCCc-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987766666555665543211 0 1111 335677888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhheec---ccc--CC---------CCCCCCCChhhHHHHHHHHHHHhhchhHHHHhhhhhc
Q 011037 233 WLNWISSIVSSCVIVFVIIVGFVH---GKT--TN---------LDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETK 298 (495)
Q Consensus 233 ~~~~~~~~~~l~~~~~~~i~~~~~---~~~--~~---------~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k 298 (495)
+++.++..++++.++.+++.++.. .+. .+ ..++.|+++.+++.++...+|+|.|+|.+++++||+|
T Consensus 168 ~i~~~~~~iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~k 247 (499)
T PRK15049 168 EMEFWFALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGECK 247 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 999999999988776666554321 111 01 1234456677778888889999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcccccccc-ccHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhchh
Q 011037 299 KPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDM-NAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQA 377 (495)
Q Consensus 299 ~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~s 377 (495)
||+|++|||+..++..+.++|++..++.....|++++.. .+|+.++++..|.+++..+++++++++.+++.++.++++|
T Consensus 248 nP~r~iPrAi~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~g~~~~~~ii~~~ilia~~ss~ns~~~~~s 327 (499)
T PRK15049 248 DPQTMVPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLGVPYIGSIMNIVVLTAALSSLNSGLYCTG 327 (499)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999888754 4799999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCchhhhcccCccccchhHHHHHHHHHHHHHhhcCcCcccccccccchhHHHHHHHHHHHHHHHHhH
Q 011037 378 RYTTQIARAHMIPPWHNSILEFKWKRMDWLCGNHCTLVFGDFRNGIAPETTCSKTLGSSSGSMVAIIVNCNEFISHR 454 (495)
Q Consensus 378 R~l~~~ardg~lP~~~~~~~~~~~p~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (495)
|++|+|||||.+|++|+|+||++.|.++++++.++..+..++......+........++.+.++.|.+.++..+..|
T Consensus 328 R~l~a~Ardg~lP~~f~kv~k~~~P~~Ail~~~~i~~l~~~l~~~~~~~~f~~l~~~~~~~~li~y~~~~~~~l~~R 404 (499)
T PRK15049 328 RILRSMAMGGSAPSFMAKMSRQHVPYAGILATLVVYVVGVFLNYLVPSRVFEIVLNFASLGIIASWAFIIVCQMRLR 404 (499)
T ss_pred HHHHHHHhcCCcCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887787888777666443222222222233444555667777777777777665544
No 3
>PRK11387 S-methylmethionine transporter; Provisional
Probab=100.00 E-value=8.9e-50 Score=411.86 Aligned_cols=323 Identities=17% Similarity=0.285 Sum_probs=275.3
Q ss_pred ccccccCCHhHHHHHHhhhhhhhhhhhccHHhHHhccCh-HHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHhHHHH
Q 011037 73 QPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGP-AIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVE 151 (495)
Q Consensus 73 ~~l~r~l~~~~~~~l~~~~~ig~g~~~~~~~~~~~~~G~-~~~~~~li~~~~~~~~~~~~ael~s~~P~~Gg~y~~~~~~ 151 (495)
+++||+++.+++.+++++.++|+|+|..++..+.. +|| +.+++|++++++.++++++++||++++|++||.|.|+++.
T Consensus 10 ~~l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~-~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~aGG~y~y~~~~ 88 (471)
T PRK11387 10 GQFKRTMKVRHLVMLSLGGVIGTGLFFNTGYIIST-TGAAGTLLAYLIGALVVYLVMQCLGELSVAMPETGAFHVYAARY 88 (471)
T ss_pred hhhhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHh
Confidence 45899999999999999999999999999999888 897 4899999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhh
Q 011037 152 LGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRS 231 (495)
Q Consensus 152 ~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~ 231 (495)
+||.+||++||.+|+++....+......+.++..+.+ +.+ .....+++.++++++|++|+|..
T Consensus 89 ~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~p------------~~~-----~~~~~~~~~~~~~~in~~gvk~~ 151 (471)
T PRK11387 89 LGPATGYTVAWLYWLTWTVALGSSLTAAGFCMQYWFP------------QVP-----VWPWCLLFCALIFGLNVVSTRFF 151 (471)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC------------cCc-----HHHHHHHHHHHHHHHHHHhHHHH
Confidence 9999999999999999998887776666655544322 111 22445566678889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhheec------ccc-------CC--CCCCCCCChhhHHHHHHHHHHHhhchhHHHHhhhh
Q 011037 232 SWLNWISSIVSSCVIVFVIIVGFVH------GKT-------TN--LDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEE 296 (495)
Q Consensus 232 ~~~~~~~~~~~l~~~~~~~i~~~~~------~~~-------~~--~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E 296 (495)
++++.++..++++.++.+++.++.. .+. ++ ..++.+++..+++.++...+|+|.|+|.+++++||
T Consensus 152 ~~~~~~~~~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E 231 (471)
T PRK11387 152 AEGEFWFSLIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGE 231 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 9999999999988876666654321 000 11 12334556667888999999999999999999999
Q ss_pred hcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccccc-cccHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhc
Q 011037 297 TKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEID-MNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLG 375 (495)
Q Consensus 297 ~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 375 (495)
+|||+|++||++..++.++.++|++..++.....|.++.. .++|+.+++++.+++++..++++.++++.+++.++.+++
T Consensus 232 ~knP~r~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~~~~~~~p~~~~~~~~g~~~~~~ii~~~~~~s~~~~~~~~~~~ 311 (471)
T PRK11387 232 TENPAKVIPVAIRTTIARLVIFFVGTVLVLAALIPMQQAGVEKSPFVLVFEKVGIPYAADIFNFVILTAILSAANSGLYA 311 (471)
T ss_pred hcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecCccccCccCChHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999888888887765 357999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhcCCCchhhhcccCccccchhHHHHHHHH
Q 011037 376 QARYTTQIARAHMIPPWHNSILEFKWKRMDWLCGNHCT 413 (495)
Q Consensus 376 ~sR~l~~~ardg~lP~~~~~~~~~~~p~~~~i~~~~~~ 413 (495)
.||++|+|||||.+|++|+|+||++.|.++++++.++.
T Consensus 312 ~sR~l~a~ardg~lP~~f~~~~~~~~P~~Ail~~~~~~ 349 (471)
T PRK11387 312 SGRMLWSLSNEGTLPACFARLTKRGIPLTALSVSMLGG 349 (471)
T ss_pred hhHHHHHHHhcCCcCHHHHHhCCCCCcHHHHHHHHHHH
Confidence 99999999999999999999998877777777665443
No 4
>PRK10249 phenylalanine transporter; Provisional
Probab=100.00 E-value=1.1e-49 Score=409.12 Aligned_cols=331 Identities=18% Similarity=0.273 Sum_probs=286.3
Q ss_pred cCccccccCCHhHHHHHHhhhhhhhhhhhccHHhHHhccChHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHhHHH
Q 011037 71 SKQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRV 150 (495)
Q Consensus 71 ~~~~l~r~l~~~~~~~l~~~~~ig~g~~~~~~~~~~~~~G~~~~~~~li~~~~~~~~~~~~ael~s~~P~~Gg~y~~~~~ 150 (495)
++++++|+++.+|+.++++++++|+|+|..++..+.. +||..+++|++++++.++++++++|+++++|++||.|.|+++
T Consensus 15 ~~~~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~-aGp~~~l~~li~~~~~~~~~~~~aEl~~~~P~~Gg~~~y~~~ 93 (458)
T PRK10249 15 QEPTLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQM-AGPAVLLGYGVAGIIAFLIMRQLGEMVVEEPVSGSFAHFAYK 93 (458)
T ss_pred CchhhhccCcHhHhhhhhhhcccchhHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 3457999999999999999999999999999999987 999999999999999999999999999999999999999999
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhh
Q 011037 151 ELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRR 230 (495)
Q Consensus 151 ~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~ 230 (495)
.+||.+||++||.+|+++....+.+....+.++..+.+ +.+ ...+..+++++.+.+|++|+|.
T Consensus 94 ~~g~~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~------------~~~-----~~~~~~~~~~l~~~lN~~gv~~ 156 (458)
T PRK10249 94 YWGPFAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFP------------DVP-----TWIWAAAFFIIINAVNLVNVRL 156 (458)
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC------------cCc-----HHHHHHHHHHHHHHHHHhcchh
Confidence 99999999999999999988877777777777775543 111 2356778888899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhee---ccc------cCCC---CCCCCCChhhHHHHHHHHHHHhhchhHHHHhhhhhc
Q 011037 231 SSWLNWISSIVSSCVIVFVIIVGFV---HGK------TTNL---DPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETK 298 (495)
Q Consensus 231 ~~~~~~~~~~~~l~~~~~~~i~~~~---~~~------~~~~---~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k 298 (495)
.++++.++..+|++.++++++.++. ..+ .++. .++.++++.+++.++...+|+|.|+|.+++++||+|
T Consensus 157 ~~~i~~~~~~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~ 236 (458)
T PRK10249 157 YGETEFWFALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEAR 236 (458)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHhc
Confidence 9999999999998766665554332 111 1111 123456788999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcccccccc-ccHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhchh
Q 011037 299 KPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDM-NAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQA 377 (495)
Q Consensus 299 ~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~s 377 (495)
||+|++||++..+...+.++|++..+......|+++... ++|+.+++++.++++...++++.++++.+++.++.+++.|
T Consensus 237 ~P~k~iPrai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~s 316 (458)
T PRK10249 237 DPEKSIPKAVNQVVYRILLFYIGSLVVLLALYPWVEVKSNSSPFVMIFHNLDSNVVASALNFVILVASLSVYNSGVYSNS 316 (458)
T ss_pred CHhhHHHHHHHHHHHHHHHHHHHHHHHHheeccccccCccCCcHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999888888888877653 4799999998888888899999999999999999999999
Q ss_pred HHHHHHHhcCCCchhhhcccCccccchhHHHHHHHHHHHHHh
Q 011037 378 RYTTQIARAHMIPPWHNSILEFKWKRMDWLCGNHCTLVFGDF 419 (495)
Q Consensus 378 R~l~~~ardg~lP~~~~~~~~~~~p~~~~i~~~~~~~~~~~~ 419 (495)
|++|+|||||.+|++|+|+||++.|.++++++.++..+..++
T Consensus 317 R~l~a~ardg~lP~~~~kv~~~~~P~~All~~~~i~~l~~l~ 358 (458)
T PRK10249 317 RMLFGLSVQGNAPKFLTRVSRRGVPINSLMLSGAITSLVVLI 358 (458)
T ss_pred HHHHHHhcCCCcCHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998888888888887776665544
No 5
>PRK10238 aromatic amino acid transporter; Provisional
Probab=100.00 E-value=3.1e-49 Score=405.59 Aligned_cols=331 Identities=20% Similarity=0.287 Sum_probs=285.7
Q ss_pred cCccccccCCHhHHHHHHhhhhhhhhhhhccHHhHHhccChHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHhHHH
Q 011037 71 SKQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRV 150 (495)
Q Consensus 71 ~~~~l~r~l~~~~~~~l~~~~~ig~g~~~~~~~~~~~~~G~~~~~~~li~~~~~~~~~~~~ael~s~~P~~Gg~y~~~~~ 150 (495)
.++++||+++.+|..++++++++|+|+|..++..+.. +||+.+++|++++++.++++++++|+++++|.+||.|+|+++
T Consensus 6 ~~~~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~-~Gp~~i~~~~i~gi~~~~v~~s~aEl~s~~P~aGg~y~~~~~ 84 (456)
T PRK10238 6 HGEQLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQS-AGPGIILGYAIAGFIAFLIMRQLGEMVVEEPVAGSFSHFAYK 84 (456)
T ss_pred cchhhhccCcHHHHHHHHhhccccchHHHhhHHHHHh-cCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 3456899999999999999999999999999999988 999999999999999999999999999999999999999999
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhh
Q 011037 151 ELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRR 230 (495)
Q Consensus 151 ~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~ 230 (495)
.+||..||++||.+++++....+.+....++++..+.+ +.+ ...+..+++++++.+|++|+|.
T Consensus 85 ~~g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p------------~~~-----~~~~~~i~~~~~~~lN~~gv~~ 147 (456)
T PRK10238 85 YWGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYP------------EIP-----TWVSAAVFFVVINAINLTNVKV 147 (456)
T ss_pred HcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------------cCc-----HHHHHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999999999888888888876543 111 2355667778899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhee---cc------ccCC---CCCCCCCChhhHHHHHHHHHHHhhchhHHHHhhhhhc
Q 011037 231 SSWLNWISSIVSSCVIVFVIIVGFV---HG------KTTN---LDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETK 298 (495)
Q Consensus 231 ~~~~~~~~~~~~l~~~~~~~i~~~~---~~------~~~~---~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k 298 (495)
.++++.++..++++.++++++.++. .. ...+ ..++.|+++.++..++....|+|.|+|.+++++||+|
T Consensus 148 ~~~~~~~~~~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~k 227 (456)
T PRK10238 148 FGEMEFWFAIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEAD 227 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhhc
Confidence 9999999999998877655543321 11 0111 1234566777888888889999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcccccccc-ccHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhchh
Q 011037 299 KPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDM-NAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQA 377 (495)
Q Consensus 299 ~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~s 377 (495)
||+|++||++..++..+.++|+..........|++++.. ++|+.+++++.+.++...++++.++++.+++.++.++++|
T Consensus 228 nP~r~iPrAi~~~~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP~~~~~~~~g~~~~~~i~~~~i~~~~~s~~~~~~~~~s 307 (456)
T PRK10238 228 NPEQSIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHELGDTFVANALNIVVLTAALSVYNSCVYCNS 307 (456)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHheecChhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998888777788887754 4799999999988888899999999999999999999999
Q ss_pred HHHHHHHhcCCCchhhhcccCccccchhHHHHHHHHHHHHHh
Q 011037 378 RYTTQIARAHMIPPWHNSILEFKWKRMDWLCGNHCTLVFGDF 419 (495)
Q Consensus 378 R~l~~~ardg~lP~~~~~~~~~~~p~~~~i~~~~~~~~~~~~ 419 (495)
|++|+|||||.+|++|+|+||++.|.++++++.++..+..+.
T Consensus 308 R~l~a~ardg~lP~~f~kv~~~~~P~~Ail~~~~i~~l~~l~ 349 (456)
T PRK10238 308 RMLFGLAQQGNAPKALASVDKRGVPVNTILVSALVTALCVLI 349 (456)
T ss_pred HHHHHHHhCCCccHHHHhhCcCCCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999887878888887766555443
No 6
>PRK10746 putative transport protein YifK; Provisional
Probab=100.00 E-value=1e-48 Score=401.62 Aligned_cols=322 Identities=18% Similarity=0.283 Sum_probs=282.4
Q ss_pred cCccccccCCHhHHHHHHhhhhhhhhhhhccHHhHHhccChHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHhHHH
Q 011037 71 SKQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRV 150 (495)
Q Consensus 71 ~~~~l~r~l~~~~~~~l~~~~~ig~g~~~~~~~~~~~~~G~~~~~~~li~~~~~~~~~~~~ael~s~~P~~Gg~y~~~~~ 150 (495)
.++++||+++.+|+.++++++++|+|+|..++..+.. +||+.+++|++++++.++++++++||++++|++||.|.|++|
T Consensus 4 ~~~~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~-aGp~~~l~~~i~g~~~~~v~~~~aEl~~~~P~sGg~~~y~~~ 82 (461)
T PRK10746 4 NKPELQRGLEARHIELIALGGTIGVGLFMGAASTLKW-AGPSVLLAYIIAGLFVFFIMRSMGEMLFLEPVTGSFAVYAHR 82 (461)
T ss_pred CchHHhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHh-cChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 3557899999999999999999999999999999988 999999999999999999999999999999999999999999
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhh
Q 011037 151 ELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRR 230 (495)
Q Consensus 151 ~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~ 230 (495)
.+||.+||.+||.+|+++....+.+....+.++..+.+ +.+ ...+..+++++++.+|++|+|.
T Consensus 83 ~~g~~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p------------~~~-----~~~~~~~~~~~~~~lN~~gv~~ 145 (461)
T PRK10746 83 YMSPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFP------------EMA-----QWIPALIAVALVALANLAAVRL 145 (461)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC------------CCc-----hHHHHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999998888888888888776544 111 2356667788889999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhee---c--cc------cCCCC---CCCCCChhhHHHHHHHHHHHhhchhHHHHhhhh
Q 011037 231 SSWLNWISSIVSSCVIVFVIIVGFV---H--GK------TTNLD---PFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEE 296 (495)
Q Consensus 231 ~~~~~~~~~~~~l~~~~~~~i~~~~---~--~~------~~~~~---~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E 296 (495)
.+++|.+++.+|++.++++++.++. . .+ ++|+. ++.++++.++..++....|+|.|+|.+++.+||
T Consensus 146 ~~~~e~~~~~~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E 225 (461)
T PRK10746 146 YGEIEFWFAMIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGE 225 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 9999999999998877666554331 1 11 22322 345667889999999999999999999999999
Q ss_pred hcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcccccccc-ccHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhc
Q 011037 297 TKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDM-NAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLG 375 (495)
Q Consensus 297 ~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 375 (495)
+|||+|++|||+..+...+.++|++..+......|+++... ++|+.+++++.+.+....++++.++++.+++.++.+++
T Consensus 226 ~knP~k~iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~g~~~~~~i~~~~il~a~~s~~n~~~~~ 305 (461)
T PRK10746 226 AKNPQVTLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGITAAAGIINFVVLTAALSGCNSGMYS 305 (461)
T ss_pred hcChhhHHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888899988764 46999999999988888999999999999999999999
Q ss_pred hhHHHHHHHhcCCCchhhhcccCccccchhHHHHH
Q 011037 376 QARYTTQIARAHMIPPWHNSILEFKWKRMDWLCGN 410 (495)
Q Consensus 376 ~sR~l~~~ardg~lP~~~~~~~~~~~p~~~~i~~~ 410 (495)
.||++++|||||.+|++|+|+||++.|.++++++.
T Consensus 306 ~sR~l~~~a~~g~lP~~~~~~~~~g~P~~al~~~~ 340 (461)
T PRK10746 306 CGRMLYALAKNRQLPAAMAKVSRHGVPVAGVAVSI 340 (461)
T ss_pred HHHHHHHHHhCCCcCHHHHHhCCCCCcHHHHHHHH
Confidence 99999999999999999999998887777876654
No 7
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=100.00 E-value=1.6e-48 Score=401.11 Aligned_cols=330 Identities=19% Similarity=0.235 Sum_probs=283.6
Q ss_pred CccccccCCHhHHHHHHhhhhhhhhhhhccHHhHHhccChHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHhHHHH
Q 011037 72 KQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVE 151 (495)
Q Consensus 72 ~~~l~r~l~~~~~~~l~~~~~ig~g~~~~~~~~~~~~~G~~~~~~~li~~~~~~~~~~~~ael~s~~P~~Gg~y~~~~~~ 151 (495)
+.++||+|+.+|+.+++++.++|+|+|..++..+.. +||..+++|++++++.++.+++++|+++++|++||.|.|+++.
T Consensus 7 ~~~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~-~G~~~~i~~~i~~v~~~~~a~~~aEl~s~~P~~Gg~~~~~~~~ 85 (452)
T TIGR01773 7 GLKLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIAS-AGPAALLAYLLAGLLVVFIMRMLGEMAVANPDTGSFSTYADDA 85 (452)
T ss_pred hHhHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHh-cCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 345899999999999999999999999999999988 9999889999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhh
Q 011037 152 LGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRS 231 (495)
Q Consensus 152 ~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~ 231 (495)
+||.+||++||.+|++++...+.+....++++..+.+ +.+ ...+.++++++++.+|++|+|..
T Consensus 86 ~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~------------~~~-----~~~~~~~~~~~~~~~n~~gv~~~ 148 (452)
T TIGR01773 86 IGRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFP------------DIP-----LWLFSLILTIVLTLTNLYSVKSY 148 (452)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------------cCc-----HHHHHHHHHHHHHHHHHHhcchh
Confidence 9999999999999999999999888888888876544 111 34677888888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhheec---c----cc---CCC---CCCCCCChhhHHHHHHHHHHHhhchhHHHHhhhhhc
Q 011037 232 SWLNWISSIVSSCVIVFVIIVGFVH---G----KT---TNL---DPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETK 298 (495)
Q Consensus 232 ~~~~~~~~~~~l~~~~~~~i~~~~~---~----~~---~~~---~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k 298 (495)
++++.+++.++++.++.+++.++.. . +. .++ .++.|+++.+++.++...+|+|.|+|.+++++||+|
T Consensus 149 ~~~~~~~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k 228 (452)
T TIGR01773 149 GEFEFWFALIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESS 228 (452)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhhc
Confidence 9999999999988776666544321 1 11 111 234456777899999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccccc--cccHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhch
Q 011037 299 KPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEID--MNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQ 376 (495)
Q Consensus 299 ~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~--~~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 376 (495)
||+|++||++..+...+.++|++.........|+++.. +++|+.++.+..+.++...++.+.++++.+++.++.+++.
T Consensus 229 ~P~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~p~~~~~~~~~~p~~~~~~~~g~~~~~~ii~~~~~~~~~~~~~~~~~~~ 308 (452)
T TIGR01773 229 NPIKSITRATNSVIWRIIVFYLGSIFIVVALLPWNSPNLLEVGSYVAVLELLGIPHAKLIMDFVVLTAVLSCLNSALYTT 308 (452)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHeeEeCCCCcccccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888777777766543 2348888888888888889999999999999999999999
Q ss_pred hHHHHHHHhcCCCchhhhcccCccccchhHHHHHHHHHHHHHh
Q 011037 377 ARYTTQIARAHMIPPWHNSILEFKWKRMDWLCGNHCTLVFGDF 419 (495)
Q Consensus 377 sR~l~~~ardg~lP~~~~~~~~~~~p~~~~i~~~~~~~~~~~~ 419 (495)
||++++|||||.+||+|+|+||++.|.++++++.++..+..+.
T Consensus 309 sR~~~a~ardg~lP~~~~~v~~~~~P~~Ail~~~~~~~~~~l~ 351 (452)
T TIGR01773 309 SRMLYSLAERGDAPRVFMKLNKKGVPVQAVLASTFFSFLTVVV 351 (452)
T ss_pred HHHHHHHHhCCCcCHHHHhhCCCCCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998877777888777666655443
No 8
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=100.00 E-value=8.4e-49 Score=378.09 Aligned_cols=365 Identities=20% Similarity=0.298 Sum_probs=323.5
Q ss_pred cCccccccCCHhHHHHHHhhhhhhhhhhhccHHhHHhccChHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHhHHH
Q 011037 71 SKQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRV 150 (495)
Q Consensus 71 ~~~~l~r~l~~~~~~~l~~~~~ig~g~~~~~~~~~~~~~G~~~~~~~li~~~~~~~~~~~~ael~s~~P~~Gg~y~~~~~ 150 (495)
++++++|.|+.+|..++++++.||+|.|...+..+.. +||+.+++|++++++.+++.-+++||...-|++|+..+|+++
T Consensus 7 ~~~~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~-AGPSvlLaY~I~G~~~f~iMRaLGEm~~~~p~~gSF~~~a~~ 85 (462)
T COG1113 7 EEQGLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAM-AGPSVLLAYLIAGIFVFLIMRALGEMLVANPVSGSFSDYARK 85 (462)
T ss_pred cchhhhhhhHHHHHHHHHHhhhhhhhhhcccchhhhh-hCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHH
Confidence 3556999999999999999999999999999999998 999999999999999999999999999999999999999999
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhh
Q 011037 151 ELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRR 230 (495)
Q Consensus 151 ~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~ 230 (495)
.+||+.||++||.||+.++.....+..+.+.|++.+++ +.| .++.+++++++...+|..++|.
T Consensus 86 ~lG~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP------------~vP-----~Wv~al~~~~l~~~~NL~sVk~ 148 (462)
T COG1113 86 YLGPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFP------------DVP-----QWVFALAAVVLLLAVNLISVKV 148 (462)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------------CCc-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999886 333 4488899999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhheec-----------cccCCCC---CCCCCChhhHHHHHHHHHHHhhchhHHHHhhhh
Q 011037 231 SSWLNWISSIVSSCVIVFVIIVGFVH-----------GKTTNLD---PFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEE 296 (495)
Q Consensus 231 ~~~~~~~~~~~~l~~~~~~~i~~~~~-----------~~~~~~~---~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E 296 (495)
.+.++.++..+|++.++.+++.++.. .+.+|.. +|+|+|+.+++.++...+|+|.|.|.+...+.|
T Consensus 149 FGE~EfWfAlIKV~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~E 228 (462)
T COG1113 149 FGELEFWFALIKVAAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAE 228 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 99999999999999988888766531 1223332 789999999999999999999999999999999
Q ss_pred hcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccccccc-cHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhc
Q 011037 297 TKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMN-AAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLG 375 (495)
Q Consensus 297 ~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 375 (495)
+|||+|++|||+........++|+.....+....|++++..+ +|++..++.+|.++.+.++++.++.+.+++.|+.+++
T Consensus 229 t~dP~k~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~~f~~iGi~~Aa~i~N~VVLtAa~S~~NSglys 308 (462)
T COG1113 229 AKDPEKAIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTVFSLIGIPFAAGIMNFVVLTAALSALNSGLYS 308 (462)
T ss_pred hcChhhHHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHHHHHHHcCCcccccceeEEEeechhhcccccccc
Confidence 999999999999999999999999999999999999988665 7999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhcCCCchhhhcccCccccchhHHHHHHHHHHHHHhhcCcCccccc-ccccchhHHHHHHHHHHHHHHHHhH
Q 011037 376 QARYTTQIARAHMIPPWHNSILEFKWKRMDWLCGNHCTLVFGDFRNGIAPETTC-SKTLGSSSGSMVAIIVNCNEFISHR 454 (495)
Q Consensus 376 ~sR~l~~~ardg~lP~~~~~~~~~~~p~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (495)
.+|++|++|+||..||.++|++|++.|.+++++++++. +++.+.+...|+..+ +....++...++.+.+.+++-+..|
T Consensus 309 tsRmL~~la~~g~APk~~~klsk~gVP~~ai~~s~~~~-~~~V~Lny~~P~~vF~~v~s~s~~~~l~vW~~I~~s~l~~r 387 (462)
T COG1113 309 TSRMLYSLAKQGDAPKAFAKLSKRGVPVNAILLSAVVL-LLGVVLNYILPEKVFELVTSSSGLGLLFVWLMILLSQLKLR 387 (462)
T ss_pred cchHHHHHhhcCcccHhHhhccccCCCHHHHHHHHHHH-HHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988876655 445556666664433 3334555555566655555544333
No 9
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=100.00 E-value=8e-48 Score=396.82 Aligned_cols=325 Identities=18% Similarity=0.284 Sum_probs=281.0
Q ss_pred CccccccCCHhHHHHHHhhhhhhhhhhhccHHhHHhccChHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHhHHHH
Q 011037 72 KQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVE 151 (495)
Q Consensus 72 ~~~l~r~l~~~~~~~l~~~~~ig~g~~~~~~~~~~~~~G~~~~~~~li~~~~~~~~~~~~ael~s~~P~~Gg~y~~~~~~ 151 (495)
+++++|+++.+++.+++++.++|+|+|..++..+.. +||+.+++|++++++.++++.+++|+++..|..|+.|.|+++.
T Consensus 15 ~~~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~-aGp~~i~~~~i~~i~~~~~~~s~aEl~s~~~~~~~~~~ya~~~ 93 (469)
T PRK11049 15 EQSLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISL-AGPSIIFVYMIIGFMLFFVMRAMGELLLSNLEYKSFSDFASDL 93 (469)
T ss_pred chhhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhh-cCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 346999999999999999999999999999999988 9999899999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhh
Q 011037 152 LGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRS 231 (495)
Q Consensus 152 ~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~ 231 (495)
+||.+||++||.+|+++....+.++...+.++..+.+ +.+ ...++.+++++++.+|++|+|..
T Consensus 94 ~g~~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p------------~~~-----~~~~~~~~~~~~~~iN~~g~~~~ 156 (469)
T PRK11049 94 LGPWAGYFTGWTYWFCWVVTGIADVVAITAYAQFWFP------------DLS-----DWVASLAVVLLLLSLNLATVKMF 156 (469)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------------CCc-----HHHHHHHHHHHHHHHHHHhHHHH
Confidence 9999999999999999987777777777777766543 111 22456667788899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhheecc------c------cC---CCCCCCCCChhhHHHHHHHHHHHhhchhHHHHhhhh
Q 011037 232 SWLNWISSIVSSCVIVFVIIVGFVHG------K------TT---NLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEE 296 (495)
Q Consensus 232 ~~~~~~~~~~~l~~~~~~~i~~~~~~------~------~~---~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E 296 (495)
+++|.+.+.++++.++.+++.++... . +. |..++.|+++.+++.++...+|+|.|+|.+++++||
T Consensus 157 ~~i~~~~~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E 236 (469)
T PRK11049 157 GEMEFWFAMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAE 236 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHH
Confidence 99999999999988877776655421 0 11 111344567788999999999999999999999999
Q ss_pred hcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcccccccc-ccHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhc
Q 011037 297 TKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDM-NAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLG 375 (495)
Q Consensus 297 ~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 375 (495)
+|||+|++||++..+.+.+.++|++.........|++++.. ++|+.++++..+.++...++.+.++++.+++.++.+++
T Consensus 237 ~knP~r~iPrai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~s~~~~~~~~~~~ 316 (469)
T PRK11049 237 TKDPEKSLPRAINSIPIRIIMFYVFALIVIMSVTPWSSVVPDKSPFVELFVLVGLPAAASVINFVVLTSAASSANSGVFS 316 (469)
T ss_pred hcCHhhHHHHHHHHHHHHHHHHHHHHHHHHeeecCccccCccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888999999999999888888888754 47999988888888888999999999999999999999
Q ss_pred hhHHHHHHHhcCCCchhhhcccCccccchhHHHHHHHHH
Q 011037 376 QARYTTQIARAHMIPPWHNSILEFKWKRMDWLCGNHCTL 414 (495)
Q Consensus 376 ~sR~l~~~ardg~lP~~~~~~~~~~~p~~~~i~~~~~~~ 414 (495)
.||++++|||||.+|++|+|+||++.|.+++++..++..
T Consensus 317 ~sR~l~a~ardg~lP~~~~kv~~~~tP~~Ai~~~~~~~~ 355 (469)
T PRK11049 317 TSRMLFGLAQEGVAPKAFAKLSKRAVPAKGLTFSCICLL 355 (469)
T ss_pred HHHHHHHHHhCCCCCHHHHhhCCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999998777778777665443
No 10
>PRK10836 lysine transporter; Provisional
Probab=100.00 E-value=7.6e-48 Score=399.05 Aligned_cols=330 Identities=18% Similarity=0.226 Sum_probs=272.9
Q ss_pred cCccccccCCHhHHHHHHhhhhhhhhhhhccHHhHHhccChH-HHHHHHHHHHHHHHHHHHHhhhhhccccccchhHhHH
Q 011037 71 SKQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLR 149 (495)
Q Consensus 71 ~~~~l~r~l~~~~~~~l~~~~~ig~g~~~~~~~~~~~~~G~~-~~~~~li~~~~~~~~~~~~ael~s~~P~~Gg~y~~~~ 149 (495)
++++++|+++.++++++++|+++|+|+|..++..+.. +||. .+++|+++++++++.+++++|+++++|++||.|.|++
T Consensus 9 ~~~~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~-aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~sGg~y~y~~ 87 (489)
T PRK10836 9 EAPGLRRELKARHLTMIAIGGSIGTGLFVASGATISQ-AGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSGSFATYGQ 87 (489)
T ss_pred CcccccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHh-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
Confidence 3456899999999999999999999999999999988 9997 8999999999999999999999999999999999999
Q ss_pred HHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhh
Q 011037 150 VELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTR 229 (495)
Q Consensus 150 ~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~ 229 (495)
+.+|+.+||++||.+|+.+....+........++..+.+ +.+ ...+..+++++++.+|++|+|
T Consensus 88 ~~~g~~~gf~~Gw~~~~~~~~~~a~~~~a~~~~~~~~~~------------~~~-----~~~~~~~~~~~~~~lN~~gv~ 150 (489)
T PRK10836 88 NYVEEGFGFALGWNYWYNWAVTIAVDLVAAQLVMSWWFP------------DTP-----GWIWSALFLGVIFLLNYISVR 150 (489)
T ss_pred HHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC------------CCc-----hHHHHHHHHHHHHHHHHHcch
Confidence 999999999999999998877666544444444433322 111 124466677778899999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhheec------c----ccCCCC---CCCCCChhhHHHHHHHHHHHhhchhHHHHhhhh
Q 011037 230 RSSWLNWISSIVSSCVIVFVIIVGFVH------G----KTTNLD---PFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEE 296 (495)
Q Consensus 230 ~~~~~~~~~~~~~l~~~~~~~i~~~~~------~----~~~~~~---~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E 296 (495)
..+++|.++..+|+..++.+++.++.. . +++|+. +..++++.+++.+.....|+|.|+|.+++++||
T Consensus 151 ~~~~~~~~~~~~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E 230 (489)
T PRK10836 151 GFGEAEYWFSLIKVTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGE 230 (489)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 999999999999987766655433321 1 112221 112345666776666778999999999999999
Q ss_pred hcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccccc---------cccHHHHHHHHhCchHHHHHHHHHHHHHHHH
Q 011037 297 TKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEID---------MNAAYSIAFRQIGMNWAKYLVSVCALKGMTT 367 (495)
Q Consensus 297 ~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~---------~~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~ 367 (495)
+|||+||+||++..++.++.++|++.........|.++.+ ..+|+..+++..+.++...+++++++++.++
T Consensus 231 ~knP~r~iPrAi~~~~~~v~~~Yvl~~~~~~~~vp~~~~~~~~~~~~~~~~sp~~~~~~~~g~~~~~~ii~~~il~a~~~ 310 (489)
T PRK10836 231 SEDPAKNIPRAVRQVFWRILLFYVFAILIISLIIPYTDPSLLRNDVKDISVSPFTLVFQHAGLLSAAAVMNAVILTAVLS 310 (489)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHheecCCCChhhhccccccccCCcHHHHHHHcCChhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988888865431 1368888999888888889999999999999
Q ss_pred HHHHHhhchhHHHHHHHhcCCCchhhhcccCccccchhHHHHHHHHHHHHH
Q 011037 368 SLLVGSLGQARYTTQIARAHMIPPWHNSILEFKWKRMDWLCGNHCTLVFGD 418 (495)
Q Consensus 368 ~~~~~~~~~sR~l~~~ardg~lP~~~~~~~~~~~p~~~~i~~~~~~~~~~~ 418 (495)
+.++.+++.||++|+|||||.+|++|+|+||++.|.++++++.+++.+..+
T Consensus 311 ~~n~~~~~~sR~l~a~Ardg~lP~~~~kv~~~~~P~~All~~~~~~~l~~l 361 (489)
T PRK10836 311 AGNSGMYASTRMLYTLACDGKAPRIFAKLSRGGVPRNALYATTVIAGLCFL 361 (489)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCHHHHhhCCCCCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999887777788877776655443
No 11
>PRK10655 potE putrescine transporter; Provisional
Probab=100.00 E-value=9.2e-48 Score=394.20 Aligned_cols=329 Identities=16% Similarity=0.205 Sum_probs=277.9
Q ss_pred ccccCCHhHHHHHHhhhhhhhhhhhccHHhHHhccChHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHhHHHHhch
Q 011037 75 LQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGD 154 (495)
Q Consensus 75 l~r~l~~~~~~~l~~~~~ig~g~~~~~~~~~~~~~G~~~~~~~li~~~~~~~~~~~~ael~s~~P~~Gg~y~~~~~~~g~ 154 (495)
++|+++.++++++++++++|+|+|..++.. .. +|+..+++|++++++.++.+++++|+++++|++||.|.|+++.+||
T Consensus 4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~~-~~-~G~~~~~~w~i~~~~~~~~a~~~aeL~~~~P~~GG~y~y~~~~~G~ 81 (438)
T PRK10655 4 KSNKMGVVQLTILTAVNMMGSGIIMLPTKL-AQ-VGTISILSWLVTAVGSMALAYAFAKCGMFSRKSGGMGGYAEYAFGK 81 (438)
T ss_pred ccCcccHHHHHHHHHHhhhhhHHHHhHHHH-HH-hhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHcCc
Confidence 478999999999999999999999998765 44 7888889999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhhHHH
Q 011037 155 FVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWL 234 (495)
Q Consensus 155 ~~g~~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~ 234 (495)
..||++||.+|+.++......+.....|+..+++ ... ++....++.++++++++.+|++|+|..+++
T Consensus 82 ~~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~-~~~------------~~~~~~~~~~~~l~~~~~ln~~g~~~~~~i 148 (438)
T PRK10655 82 SGNFMANYTYGVSLLIANVAIAISAVGYGTELFG-ATL------------SPVQICLATIGVLWLCTVANFGGARITGQI 148 (438)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccc------------chHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 9999999999999988777666667777776654 111 111234566777888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhheeccccCCCC-CCCCCC---hhhHHHHHHHHHHHhhchhHHHHhhhhhcCCCCchhHHHHH
Q 011037 235 NWISSIVSSCVIVFVIIVGFVHGKTTNLD-PFLPYG---TEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVG 310 (495)
Q Consensus 235 ~~~~~~~~l~~~~~~~i~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~~p~ai~~ 310 (495)
+.+....+++.++++.+.++...+.++.. ++.+.+ +.++..++...+|+|.|+|.+++++||+|||+||+||+++.
T Consensus 149 ~~i~~~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~ 228 (438)
T PRK10655 149 SSVTVWGVIIPVVGLSIIGWFWFSPSLYVAAWNPHHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPERNVPIAVLG 228 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcccccCCcCccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCccccccHHHHH
Confidence 99999888887777777665544444442 233333 35677888889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccccc-ccHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHhcCCC
Q 011037 311 SMCMITAVYCLMALALTMMVKYTEIDM-NAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMI 389 (495)
Q Consensus 311 ~~~~~~~~y~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~~~ardg~l 389 (495)
+..+++++|++.........|++++.. ++|+.+++++..+++...++.+..+++.+++.++.+.+.+|++++|+|||.+
T Consensus 229 ~~~~~~~~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~g~~~~~~~~~~~~is~~~~~~~~~~~~sR~~~~~a~dg~l 308 (438)
T PRK10655 229 GTLGAAVIYIVSTNVIAGIVPNMELANSTAPFGLAFAQMFNPTVGKIVMALMVMSCCGSLLGWQFTIAQVFKSSADEGYF 308 (438)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHhhccchHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch
Confidence 999999999999888877788877753 4788888888777877888888889999999999999999999999999999
Q ss_pred chhhhcccCccccchhHHHHHHHHHHHHH
Q 011037 390 PPWHNSILEFKWKRMDWLCGNHCTLVFGD 418 (495)
Q Consensus 390 P~~~~~~~~~~~p~~~~i~~~~~~~~~~~ 418 (495)
|++|+|+||++.|.+++++..++..++.+
T Consensus 309 P~~~~~v~~~~tP~~all~~~~i~~~l~l 337 (438)
T PRK10655 309 PKIFSRVTKVDAPVQGMLIIVVIQSLLSL 337 (438)
T ss_pred hHHHHhhCcCCCCHHHHHHHHHHHHHHHH
Confidence 99999999887777788777766655443
No 12
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-48 Score=383.60 Aligned_cols=371 Identities=18% Similarity=0.239 Sum_probs=326.7
Q ss_pred cccccCCHhHHHHHHhhhhhhhhhhhccHHhHHhccChH-HHHHHHHHHHHHHHHHHHHhhhhhccccccchhHhHHHHh
Q 011037 74 PLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVEL 152 (495)
Q Consensus 74 ~l~r~l~~~~~~~l~~~~~ig~g~~~~~~~~~~~~~G~~-~~~~~li~~~~~~~~~~~~ael~s~~P~~Gg~y~~~~~~~ 152 (495)
++||+|..+|+.++++|+.||+|+|+..|..+.. +||+ .+++|++.+++.+++..+++||+..+|.+|+...|++|..
T Consensus 41 ~lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~-aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~sGsF~~ya~rfv 119 (541)
T COG0833 41 ELKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQ-AGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPVSGSFSTYATRFV 119 (541)
T ss_pred hhhhhhhHHHHHHHHhccccccceeeecchhhhc-cCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhhhhc
Confidence 6999999999999999999999999999999998 9998 9999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhhH
Q 011037 153 GDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSS 232 (495)
Q Consensus 153 g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~ 232 (495)
+|-+||..||.||+.|.+..+.+..+.+..++.+.+ +..| ..++..++++++..+|.+|+|..+
T Consensus 120 dpa~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p-----------~~v~-----~~~w~~iF~~~i~~iN~~~Vk~fG 183 (541)
T COG0833 120 DPAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFP-----------DTVP-----PWIWIAIFLVLIFLLNLFGVKGFG 183 (541)
T ss_pred CchHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcC-----------CCCC-----hHHHHHHHHHHHHHHHHhcccccc
Confidence 999999999999999999999999999999998874 0111 457888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhheec--cc--------cC--CCCCCCCCChhhHHHHHHHHHHHhhchhHHHHhhhhhcCC
Q 011037 233 WLNWISSIVSSCVIVFVIIVGFVH--GK--------TT--NLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKP 300 (495)
Q Consensus 233 ~~~~~~~~~~l~~~~~~~i~~~~~--~~--------~~--~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p 300 (495)
..+.++..+|++.++.+++.+++. +. .. .-++.+++|+.+++..+..+.|+|.|.|.+.-.++|.|||
T Consensus 184 E~Efw~s~iKV~~ii~Fii~gii~~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP 263 (541)
T COG0833 184 ETEFWFSSIKVLTIIGFIILGIIIICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENP 263 (541)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCc
Confidence 999999999999988888876642 11 01 1124567889999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHhccccccc---------cccHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH
Q 011037 301 SRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEID---------MNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLV 371 (495)
Q Consensus 301 ~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~---------~~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 371 (495)
+|++|||+.-....+.++|++..+.+...+|++|.+ ..+|++.++++.|.+.++.+++..++.+++++.|+
T Consensus 264 ~K~iPkAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~svlSa~NS 343 (541)
T COG0833 264 RKSIPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILTSVLSAANS 343 (541)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhcCCccchHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999987732 23799999999999999999999999999999999
Q ss_pred HhhchhHHHHHHHhcCCCchhhhcccCccccchhHHHHHHHHHHHHH---------------------------------
Q 011037 372 GSLGQARYTTQIARAHMIPPWHNSILEFKWKRMDWLCGNHCTLVFGD--------------------------------- 418 (495)
Q Consensus 372 ~~~~~sR~l~~~ardg~lP~~~~~~~~~~~p~~~~i~~~~~~~~~~~--------------------------------- 418 (495)
.+|++||++|+||+||..||+|+|+||+++|.++++++.+..++..+
T Consensus 344 ~lYasSR~L~sLA~~g~APk~f~~~~r~GvP~~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg~s~~i~W~~I~~shi 423 (541)
T COG0833 344 GLYASSRMLYSLAKQGKAPKIFAKVDRRGVPLVALLVTLLFGLLAFLNSSFKETTVFNWLLNISGLSGFIAWGSICLSHI 423 (541)
T ss_pred cchHHHHHHHHHHhcCCCchHHHhhCCCCCchHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999876655544333211
Q ss_pred ------hhcCcCcccccccccchhHHHHHHHHHHHHHHHHhHHHHhhch
Q 011037 419 ------FRNGIAPETTCSKTLGSSSGSMVAIIVNCNEFISHRLIGLFGI 461 (495)
Q Consensus 419 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (495)
..++...+.+.+.+....++.+++++++++.++.+.|....|.
T Consensus 424 rFR~A~~~QG~s~~~L~yks~~~p~g~~~~~~~~~li~i~q~y~af~p~ 472 (541)
T COG0833 424 RFRRAMKAQGRSLDELPYKSPFGPYGPIYGLILCILILIGQGYVAFFPI 472 (541)
T ss_pred HHHHHHHHcCCChhhcCccCCCccHHHHHHHHHHHHHHHHcchheeecC
Confidence 1233345567777777788888888888888888888888874
No 13
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=100.00 E-value=2.8e-47 Score=391.01 Aligned_cols=331 Identities=19% Similarity=0.272 Sum_probs=276.6
Q ss_pred ccccccCCHhHHHHHHhhhhhhhhhhhccHHhHHhccChHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHhHHHHh
Q 011037 73 QPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVEL 152 (495)
Q Consensus 73 ~~l~r~l~~~~~~~l~~~~~ig~g~~~~~~~~~~~~~G~~~~~~~li~~~~~~~~~~~~ael~s~~P~~Gg~y~~~~~~~ 152 (495)
++++|+++.+++++++++.++|+|+|..++.... .|+..+++|+++++..++.+++++|+++++|++||.|.|+++.+
T Consensus 4 ~~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~--~g~~~~~~~~i~~~~~l~~al~~aEL~s~~P~aGG~y~~~~~~~ 81 (445)
T PRK10644 4 DADAHKVGLIPVTLMVAGNIMGSGVFLLPANLAS--TGGIAIYGWLVTIIGALGLSMVYAKMSSLDPSPGGSYAYARRCF 81 (445)
T ss_pred CccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHHHc
Confidence 4578999999999999999999999999987654 45667899999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhhH
Q 011037 153 GDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSS 232 (495)
Q Consensus 153 g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~ 232 (495)
||.+||++||.+|+.++............+...+.+ . .+ .+....++.++++++++.+|++|+|..+
T Consensus 82 g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----------~~-~~~~~~~~~~~~~~~~~~ln~~gvk~~~ 148 (445)
T PRK10644 82 GPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFP-I-----------LK-DPLVLTITCVVVLWIFVLLNIVGPKMIT 148 (445)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-c-----------cC-CcHHHHHHHHHHHHHHHHHHHhchHHHH
Confidence 999999999999998887766666556666665544 1 11 1112345667788889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhheeccccCCCC-CCCC---CChhhHHHHHHHHHHHhhchhHHHHhhhhhcCCCCchhHHH
Q 011037 233 WLNWISSIVSSCVIVFVIIVGFVHGKTTNLD-PFLP---YGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGL 308 (495)
Q Consensus 233 ~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~~p~ai 308 (495)
++|++++.++++.++++.+.++...+.++.. .+.+ .++.++..++...+|+|.|+|.+++++||+|||+|++||++
T Consensus 149 ~i~~i~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iPrai 228 (445)
T PRK10644 149 RVQAVATVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIAT 228 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCchhccCCccccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcccchhHHH
Confidence 9999999999887777776665443333322 1211 23556777888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccc-cccHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHhcC
Q 011037 309 VGSMCMITAVYCLMALALTMMVKYTEID-MNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAH 387 (495)
Q Consensus 309 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~~~ardg 387 (495)
+.++.++.++|++..++.....|++++. +++|+.+++++..+++...++.+..+++.+++.++.+...+|++++|||||
T Consensus 229 ~~s~~i~~v~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~g~~~~~~v~~~~~~s~~~~~~~~~~~~sr~~~a~ardg 308 (445)
T PRK10644 229 IGGVLIAAVCYVLSSTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDG 308 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHhcCCChHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999988888887765 357999988887777777888888889999999999999999999999999
Q ss_pred CCchhhhcccCccccchhHHHHHHHHHHHHH
Q 011037 388 MIPPWHNSILEFKWKRMDWLCGNHCTLVFGD 418 (495)
Q Consensus 388 ~lP~~~~~~~~~~~p~~~~i~~~~~~~~~~~ 418 (495)
.+||+|+|+||++.|.++++++.++..++.+
T Consensus 309 ~lP~~~~~v~~~~tP~~Ai~~~~~i~~l~~l 339 (445)
T PRK10644 309 LFPPIFARVNKAGTPVAGLLIVGVLMTIFQL 339 (445)
T ss_pred CccHHHHhhCcCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999987777788888777666544
No 14
>PRK10580 proY putative proline-specific permease; Provisional
Probab=100.00 E-value=5.6e-47 Score=389.80 Aligned_cols=325 Identities=18% Similarity=0.342 Sum_probs=277.0
Q ss_pred cCccccccCCHhHHHHHHhhhhhhhhhhhccHHhHHhccChHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHhHHH
Q 011037 71 SKQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRV 150 (495)
Q Consensus 71 ~~~~l~r~l~~~~~~~l~~~~~ig~g~~~~~~~~~~~~~G~~~~~~~li~~~~~~~~~~~~ael~s~~P~~Gg~y~~~~~ 150 (495)
+++++||+++.+++++++++.++|+|+|..++..+.. +||+.+++|++++++.++++++++|+++++|.+||.|.|+++
T Consensus 3 ~~~~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~-aG~~~~l~~~i~~i~~~~~a~~~aEl~s~~P~~Gg~y~y~~~ 81 (457)
T PRK10580 3 SKNKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKM-AGPSVLLAYIIGGVAAYIIMRALGEMSVHNPAASSFSRYAQE 81 (457)
T ss_pred CCccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3457899999999999999999999999999998887 999999999999999999999999999999999999999999
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhh
Q 011037 151 ELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRR 230 (495)
Q Consensus 151 ~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~ 230 (495)
.+||.+||++||.+++.+....+......+.++..+.+ +.+ ...+.++++++...+|++|+|.
T Consensus 82 ~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~-----~~~~~~~~~~l~~~ln~~gv~~ 144 (457)
T PRK10580 82 NLGPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFP------------TVP-----HWIWVLSVVLIICAVNLMSVKV 144 (457)
T ss_pred HcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------------CCC-----hHHHHHHHHHHHHHHHHccchh
Confidence 99999999999999999988777777777777765543 122 1244566677889999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhee-------cc-ccC---C-C--CCCCCCChhhHHHHHHHHHHHhhchhHHHHhhhh
Q 011037 231 SSWLNWISSIVSSCVIVFVIIVGFV-------HG-KTT---N-L--DPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEE 296 (495)
Q Consensus 231 ~~~~~~~~~~~~l~~~~~~~i~~~~-------~~-~~~---~-~--~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E 296 (495)
.++++.+++.+++..++++++.++. .. +.. + + .++.++++.+++.++...+|+|.|+|.+++++||
T Consensus 145 ~~~~~~~~~~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E 224 (457)
T PRK10580 145 FGELEFWFSFFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGE 224 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 9999999999998877666544321 00 111 1 1 1234567778999999999999999999999999
Q ss_pred hcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcccccccc-ccHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhc
Q 011037 297 TKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDM-NAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLG 375 (495)
Q Consensus 297 ~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 375 (495)
+|||+|++||+++.+..++.++|++..+......|++++.. ++|+..+++..|.++...++.+.++++.+++.++.+++
T Consensus 225 ~knP~k~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~i~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (457)
T PRK10580 225 AKDPEKSIPRAINSVPMRILVFYVGTLFVIMSIYPWNQVGTNGSPFVLTFQHMGITFAASILNFVVLTASLSAINSDVFG 304 (457)
T ss_pred hcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecccCCCCccCChHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988887788888764 46888888888888888899998899999999999999
Q ss_pred hhHHHHHHHhcCCCchhhhcccCccccchhHHHHHHHH
Q 011037 376 QARYTTQIARAHMIPPWHNSILEFKWKRMDWLCGNHCT 413 (495)
Q Consensus 376 ~sR~l~~~ardg~lP~~~~~~~~~~~p~~~~i~~~~~~ 413 (495)
.||++++|||||.+|++|+|+||++.|.++++++.++.
T Consensus 305 ~sR~~~~~ardg~lP~~~~kv~~~~~P~~Ai~~~~~~~ 342 (457)
T PRK10580 305 VGRMLHGMAEQGSAPKIFSKTSRRGIPWVTVLVMTTAL 342 (457)
T ss_pred HHHHHHHHHhCCCcCHHHHhhCCCCCcHHHHHHHHHHH
Confidence 99999999999999999999999877777777665433
No 15
>TIGR00909 2A0306 amino acid transporter.
Probab=100.00 E-value=7.9e-47 Score=386.78 Aligned_cols=384 Identities=26% Similarity=0.431 Sum_probs=311.5
Q ss_pred ccccCCHhHHHHHHhhhhhhhhhhhccHHhHHhccChHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHhHHHHhch
Q 011037 75 LQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGD 154 (495)
Q Consensus 75 l~r~l~~~~~~~l~~~~~ig~g~~~~~~~~~~~~~G~~~~~~~li~~~~~~~~~~~~ael~s~~P~~Gg~y~~~~~~~g~ 154 (495)
++|+++.++.+++.++.++|+|++..++..... +|+..+++|++++++.++.+++++|+++++|++||.|.|+++.+||
T Consensus 1 l~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~-~G~~~~l~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~ 79 (429)
T TIGR00909 1 LSRELGLFDLTMLGIGAMIGTGIFVVTGIAAGK-AGPAVILSFVLAGLTALFIALVYAELAAMLPVAGSPYTYAYEAMGE 79 (429)
T ss_pred CCccccHHHHHHHHHhhhhcchHHHhHHHHHHH-cCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcceeeHHHHhCc
Confidence 579999999999999999999999999988777 8999889999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC--CcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhhH
Q 011037 155 FVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSN--NSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSS 232 (495)
Q Consensus 155 ~~g~~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~ 232 (495)
..|++.||.+++.+....+..+..+++++..+++.. +.+.+.. ..+.......+..++++++++++|++|+|..+
T Consensus 80 ~~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~ 156 (429)
T TIGR00909 80 LTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLT---AKPGNGGVFNLPALLIVLFLTYILYLGAKESG 156 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhh---cCCcccccccHHHHHHHHHHHHHHHhCcHHHH
Confidence 999999999999999999999999999988876511 0010000 00000111224567788999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhheeccccCCCCCCCCCChhhHHHHHHHHHHHhhchhHHHHhhhhhcCCCCchhHHHHHHH
Q 011037 233 WLNWISSIVSSCVIVFVIIVGFVHGKTTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSM 312 (495)
Q Consensus 233 ~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~~p~ai~~~~ 312 (495)
|++.++..++++.++++++.++...+.+++.++.+.++.++..++...+|+|.|+|.+++++||+|||+|++||++..+.
T Consensus 157 ~~~~v~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r~ip~ai~~~~ 236 (429)
T TIGR00909 157 KVNDILVVLKVAALLLFAALGAIHFASNNYTPFMPMGFGGVGAATALVFFAFIGFEAISTAAEEVKNPERDIPKAIILSL 236 (429)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHhhCcHHhcCCCCCCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCccccccHHHHHHH
Confidence 99999999999988777776666656666666666777888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccccccc-ccHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHhcCCCch
Q 011037 313 CMITAVYCLMALALTMMVKYTEIDM-NAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPP 391 (495)
Q Consensus 313 ~~~~~~y~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~~~ardg~lP~ 391 (495)
.++.++|++..+......|.+++.. +.|+..+.++.++++...++.+..+++.+++.++.+.+.||+++++||||.+|+
T Consensus 237 ~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~ 316 (429)
T TIGR00909 237 IVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRDGLLPG 316 (429)
T ss_pred HHHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcH
Confidence 9999999999999888888877644 468888888888899999999999999999999999999999999999999999
Q ss_pred hhhcccCccccch-hHHHHHHHHHHHHHhhcCcCcccccccccchhHHHHHHHHHHHHHHHHhHHHHhhchhhhHHHHhh
Q 011037 392 WHNSILEFKWKRM-DWLCGNHCTLVFGDFRNGIAPETTCSKTLGSSSGSMVAIIVNCNEFISHRLIGLFGIFEVHHLQCS 470 (495)
Q Consensus 392 ~~~~~~~~~~p~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (495)
+|+|+|+|+++|+ ++++..++..++..... ...+. ........+.|.+.
T Consensus 317 ~~~~~~~~~~~P~~a~~~~~~i~~~~~~~~~---------------~~~l~---------------~~~~~~~~~~y~~~ 366 (429)
T TIGR00909 317 SLSKVHPKTGTPHMSIIIFSLTAALLASLVP---------------LEGLA---------------ELTSIGTLIAFAAV 366 (429)
T ss_pred HHHHcCCCCCCcHHHHHHHHHHHHHHHHHcC---------------HHHHH---------------HHHHHHHHHHHHHH
Confidence 9999998866655 66666555544332110 00010 11111112245666
Q ss_pred hhhhheeeccCcccccCCCCCc
Q 011037 471 NACLLLVSWPSCNLRCGSSEPR 492 (495)
Q Consensus 471 ~~~~~~l~~~~p~~~~~~~~~~ 492 (495)
..+.+.+|+++||.++++|.|.
T Consensus 367 ~~a~~~lr~~~~~~~~~~~~~~ 388 (429)
T TIGR00909 367 NVAVIILRRRRPDIQRAFRCPL 388 (429)
T ss_pred HHHHHHHHhhcCCCCCCCCCCc
Confidence 6667788889999887777653
No 16
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=2.4e-48 Score=396.87 Aligned_cols=368 Identities=29% Similarity=0.434 Sum_probs=290.7
Q ss_pred ccccccCCHhHHHHHHhhhhhhhhhhhccHHhHHhccChHHHHHHHHHHHHHHHHHHHHhhhhhcccc-ccchhHhHHHH
Q 011037 73 QPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPV-AGGSFSFLRVE 151 (495)
Q Consensus 73 ~~l~r~l~~~~~~~l~~~~~ig~g~~~~~~~~~~~~~G~~~~~~~li~~~~~~~~~~~~ael~s~~P~-~Gg~y~~~~~~ 151 (495)
+++||+|+.+|+.++++|.++|+|+|+..|.++...+||+.+++++++++.+++.+++++|++.++|. +||.|.|++|.
T Consensus 26 ~~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~aGs~~~ya~~~ 105 (554)
T KOG1286|consen 26 TELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVSAGSFYTYAYRF 105 (554)
T ss_pred chhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccccccceeeeeee
Confidence 57999999999999999999999999999999999455569999999999999999999999999999 59999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHh-hhhhh
Q 011037 152 LGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAM-SGTRR 230 (495)
Q Consensus 152 ~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~g~~~ 230 (495)
+||.+||.+||.|++.|++..++++.+.+.+++.+.. .+.+....++.+..-+....+++++++.++.+-. .++|.
T Consensus 106 i~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~---~~~~~~~~~~~~~~~~~~~fla~~v~in~~gv~~~ge~ef 182 (554)
T KOG1286|consen 106 VGESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTG---ASLIGILVDTVNPGGWIPDFLAFILIINLFGVLAYGEVEF 182 (554)
T ss_pred eCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc---cccccccccCCCCCccHHHHHHHHHHHHHHHHhhccceee
Confidence 9999999999999999999999999999999999861 1122212122332222233333333322222222 44555
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhheeccccCCCC---------CCCCCChhhHHHHHHHHHHHhhchhHHHHhhhhhcCCC
Q 011037 231 SSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLD---------PFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPS 301 (495)
Q Consensus 231 ~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~ 301 (495)
....+.+++.+.++.+.+++++|....|..|+. .|.|.+++|++.++..+.|+|.|+|.++..+||+|||+
T Consensus 183 ~~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP~ 262 (554)
T KOG1286|consen 183 SLAFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEAKNPR 262 (554)
T ss_pred hHHHHHHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhccCCc
Confidence 566666666666666666666666666654544 37777899999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhccccc--ccccc----HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhc
Q 011037 302 RDIPIGLVGSMCMITAVYCLMALALTMMVKYTE--IDMNA----AYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLG 375 (495)
Q Consensus 302 k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~--~~~~~----p~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 375 (495)
|++|+|+..++.++.++|++..+.+...+|+++ ++.++ |+..+.+..+.+.+..++++++++++.+++++.+++
T Consensus 263 k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k~~~~ivna~iL~~~~s~~n~~~y~ 342 (554)
T KOG1286|consen 263 KAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAKYLPHIVNAGILIGLLSSLNSSLYA 342 (554)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHhccCccccchhhhHHHHHHHHHHHHHHhHH
Confidence 999999999999999999999999999999988 66665 555455555555566699999999999999999999
Q ss_pred hhHHHHHHHhcCCCchhhhcccCccccchhHHHHHHHHHHHHHhhcCcCcccccccccchhHHHHHHH
Q 011037 376 QARYTTQIARAHMIPPWHNSILEFKWKRMDWLCGNHCTLVFGDFRNGIAPETTCSKTLGSSSGSMVAI 443 (495)
Q Consensus 376 ~sR~l~~~ardg~lP~~~~~~~~~~~p~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (495)
++|.+++||+||.+||+|+++||+++|.++.++..+...+..+.......+..+.+..+.+++.++.+
T Consensus 343 ~sR~l~amA~~G~~Pk~f~~v~~~g~P~~a~~v~~~~~~l~~~~~~~~~~~~f~~L~~~~si~tl~~w 410 (554)
T KOG1286|consen 343 GSRVLYALAKDGLAPKFFARVDRRGVPLVAVLVSGLFGALAALNFSLGAATVFNWLVNLSSIGTLFAW 410 (554)
T ss_pred hHHHHHHHHhcCCcchHHhhcCCCCCchhHHHHHHHHHHHHHHHhccccchHHHHHHHHHhHHHHHHH
Confidence 99999999999999999999999988888888877777666665554433333333333344444443
No 17
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=100.00 E-value=2e-46 Score=384.76 Aligned_cols=372 Identities=23% Similarity=0.277 Sum_probs=294.8
Q ss_pred CccccccCCHhHHHHHHhhhhhhhhhhhccHHhHHhccChH-HHHHHHHHHHHHHHHHHHHhhhhhccccccchhHhHHH
Q 011037 72 KQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRV 150 (495)
Q Consensus 72 ~~~l~r~l~~~~~~~l~~~~~ig~g~~~~~~~~~~~~~G~~-~~~~~li~~~~~~~~~~~~ael~s~~P~~Gg~y~~~~~ 150 (495)
++++||+++.++.++++++.++| |.+...+..+.. +||. .++++++++++.++.+++++|+++++|++||.|.|+++
T Consensus 2 ~~~l~r~l~~~~~~~l~~~~~ig-g~~~~~~~~~~~-~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~Gg~y~~~~~ 79 (442)
T TIGR00908 2 HRQLKKTLATWQLWGIGVGYVIS-GDYAGWNFGLAQ-GGWGGFVVATLLVATMYLTFCFSLAELSTMIPTAGGGYGFARR 79 (442)
T ss_pred CchhhccCCHHHHHHhHHHHHhh-ccchhHhhHHHH-hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 56799999999999999999997 777776767666 8886 88999999999999999999999999999999999999
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhh
Q 011037 151 ELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRR 230 (495)
Q Consensus 151 ~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~ 230 (495)
.+||.+||.+||.+++++....+.++..+++++..+++ ..+ ...+.++++++.+++|++|+|.
T Consensus 80 ~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p------------~~~-----~~~~~~~~~~~~~~ln~~g~~~ 142 (442)
T TIGR00908 80 AFGPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFP------------VGP-----GWLAALVFYIVFIGINILGVGE 142 (442)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------------cCc-----hhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999887665 111 2356677788889999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhheeccccCC--------CCCCCCCChhhHHHHHHHHHHHhhchhHHHHhhhhhcCCCC
Q 011037 231 SSWLNWISSIVSSCVIVFVIIVGFVHGKTTN--------LDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSR 302 (495)
Q Consensus 231 ~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k 302 (495)
.++++.++.+++++.++++.+....+.+..+ ..++.+.++.+++.++...+|+|.|+|.+++++||+|||+|
T Consensus 143 ~~~i~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r 222 (442)
T TIGR00908 143 AAKLEFVVTAVAIIALGVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKR 222 (442)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 9999999998888766555443332222111 12344556778889999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhccccccc-cccHHHHHHHHh-Cc-hHHHHHHHHHHHHHHHHHHHHHhhchhHH
Q 011037 303 DIPIGLVGSMCMITAVYCLMALALTMMVKYTEID-MNAAYSIAFRQI-GM-NWAKYLVSVCALKGMTTSLLVGSLGQARY 379 (495)
Q Consensus 303 ~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~-~~-~~~~~~~~~~~~~s~~~~~~~~~~~~sR~ 379 (495)
|+||+++.+..++.++|+..........+.+++. .++|+.++++.. |+ .+...++.+..+++.+++.++.+++.+|+
T Consensus 223 ~iprai~~s~~~~~~~~~~~~~~~~g~~~~~~l~~~~~p~~~~~~~~~g~~~~~~~~i~~~~~~~~~~s~~~~~~~~sR~ 302 (442)
T TIGR00908 223 DIPRGLIGAILTLLALAAGILVVGPGAADAKELMGSNNPLPEALESIYGGSTWMSQFVNLVGLFGLIASFHGIIYGYSRQ 302 (442)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhcCCCHHHhCCCcchHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988877666566766664 356888888765 32 45667777888888999999999999999
Q ss_pred HHHHHhcCCCchhhhcccCccccchhHHHHHHHHHHHHHhhcCcCcccccccccchhHHHHHHHHHHHHHHHHhHHHHhh
Q 011037 380 TTQIARAHMIPPWHNSILEFKWKRMDWLCGNHCTLVFGDFRNGIAPETTCSKTLGSSSGSMVAIIVNCNEFISHRLIGLF 459 (495)
Q Consensus 380 l~~~ardg~lP~~~~~~~~~~~p~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (495)
+++|||||.+|++|+|+||++.|.++++++.++..++.+... .......+.
T Consensus 303 l~a~ardg~lP~~~~~~~~~~~P~~Ail~~~~i~~~~~l~~~------~~~l~~~~~----------------------- 353 (442)
T TIGR00908 303 IFALSRAGYLPESLSKVNRKKAPVLAIVVPGVIGFGLSLTGQ------TALIILVSV----------------------- 353 (442)
T ss_pred HHHHHhcCCccHHHHHhCCCCCcHHHHHHHHHHHHHHHHhcc------HHHHHHHHH-----------------------
Confidence 999999999999999999666666777777666555432210 000000001
Q ss_pred chhhhHHHHhhhhhhheeeccCcccccCCCCCc
Q 011037 460 GIFEVHHLQCSNACLLLVSWPSCNLRCGSSEPR 492 (495)
Q Consensus 460 ~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~ 492 (495)
+...+.|.+...+.+.+|+++|+.++++|.|.
T Consensus 354 -~~~~~~y~~~~~a~i~lr~~~p~~~rp~~~p~ 385 (442)
T TIGR00908 354 -FGAIISYVLSMAAHFTLRIRRPDMERPYRTPG 385 (442)
T ss_pred -HHHHHHHHHHHHHHHHHHhcCCCCCCCccCCC
Confidence 11122456666777888989999988887764
No 18
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=100.00 E-value=3.7e-46 Score=381.09 Aligned_cols=361 Identities=18% Similarity=0.199 Sum_probs=294.7
Q ss_pred ccccCCHhHHHHHHhhhhhhhhhhhccHHhHHhccChHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHhHHHHhch
Q 011037 75 LQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGD 154 (495)
Q Consensus 75 l~r~l~~~~~~~l~~~~~ig~g~~~~~~~~~~~~~G~~~~~~~li~~~~~~~~~~~~ael~s~~P~~Gg~y~~~~~~~g~ 154 (495)
.+|+++.++++++++++++|+|+|..++... . +||..+++|+++++.+++.+++++||++++|++||.|.|++| +||
T Consensus 3 ~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a-~-~G~~~i~~wli~~~~~l~~al~~aEL~s~~P~~GG~y~y~~~-~g~ 79 (435)
T PRK10435 3 SAKKIGLFACTGVVAGNMMGSGIALLPANLA-S-IGSIAIWGWIISIIGAMSLAYVYARLATKNPQQGGPIAYAGE-ISP 79 (435)
T ss_pred CCCcCCHHHHHHHHHhhHHHHHHHHHHHHHH-H-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHH-HCc
Confidence 4799999999999999999999999988764 4 788899999999999999999999999999999999999999 899
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhhHHH
Q 011037 155 FVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWL 234 (495)
Q Consensus 155 ~~g~~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~ 234 (495)
.+||.+||.||...+............|+..+++. ..+ +....+++++++++++++|++|+|..+++
T Consensus 80 ~~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~------------~~~-~~~~~~~~~~i~~~~~~ln~~gvk~~~~i 146 (435)
T PRK10435 80 AFGFQTGVLYYHANWIGNLAIGITAVSYLSTFFPV------------LND-PIPAGIACIAIVWVFTFVNMLGGTWVSRL 146 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc------------cCC-hHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 99999999999877776666666777777766541 111 11133556677888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhheeccccC----CCCCCCCCChhhHHHHHHHHHHHhhchhHHHHhhhhhcCCCCchhHHHHH
Q 011037 235 NWISSIVSSCVIVFVIIVGFVHGKTT----NLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVG 310 (495)
Q Consensus 235 ~~~~~~~~l~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~~p~ai~~ 310 (495)
+.+..+++++.++.+.+.++...+.+ ++.+..+.++.+++.++...+|+|.|+|.+++++||+|||+|++||++..
T Consensus 147 ~~i~~~~~li~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~iPrAi~~ 226 (435)
T PRK10435 147 TTIGLVLVLIPVVGTAIVGWHWFDAATYAANWNTSDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTVPLATML 226 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCHHhhcccccCCCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccccccHHHHH
Confidence 99988888776666555554433322 22222334577899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccc-cccHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHhcCCC
Q 011037 311 SMCMITAVYCLMALALTMMVKYTEID-MNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMI 389 (495)
Q Consensus 311 ~~~~~~~~y~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~~~ardg~l 389 (495)
+..++.++|++..+......|++++. .++|+.++++..++++...+++++++++++++.++.++..+|..++|||||.+
T Consensus 227 ~~~iv~ilYil~~~~~~~~~p~~~~~~~~~p~~~~~~~~~g~~~~~~i~~~~~i~~l~~~~~~~~~~~r~~~~~ardG~l 306 (435)
T PRK10435 227 GTGLAGIIYIAATQVISGMFPASVMAASGAPFAISASTILGNWAAPLVSAFTAFACLTSLGSWMMLVGQAGVRAANDGNF 306 (435)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHhcCCCcHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 99999999999999999999988884 45799999998888899999999899999999999999999999999999999
Q ss_pred chhhhcccCccccchhHHHHHHHHHHHHHhh---c-Cc--CcccccccccchhHHHHHHHHHHHHHHH
Q 011037 390 PPWHNSILEFKWKRMDWLCGNHCTLVFGDFR---N-GI--APETTCSKTLGSSSGSMVAIIVNCNEFI 451 (495)
Q Consensus 390 P~~~~~~~~~~~p~~~~i~~~~~~~~~~~~~---~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (495)
||+|+|+||++.|.++++++.++..++.... . .. ..+.......+++...++.|+..++..+
T Consensus 307 P~~f~k~nk~g~P~~Al~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~y~~~~~~~i 374 (435)
T PRK10435 307 PKVYGEVDKNGIPKKGLLLAAVKMTALMILITLMNSSGGKASDLFGELTGIAVLLTMLPYFYSCVDLI 374 (435)
T ss_pred cHHHHhhCcCCCCHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988888888877665554433221 1 11 1123444555667777777777777754
No 19
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=100.00 E-value=1e-45 Score=379.55 Aligned_cols=331 Identities=21% Similarity=0.280 Sum_probs=269.8
Q ss_pred CccccccCCHhHHHHHHhhhhhhhhhhhccHHhHHhccChH-HHHHHHHHHHHHHHHHHHHhhhhhccccccchhHhHHH
Q 011037 72 KQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRV 150 (495)
Q Consensus 72 ~~~l~r~l~~~~~~~l~~~~~ig~g~~~~~~~~~~~~~G~~-~~~~~li~~~~~~~~~~~~ael~s~~P~~Gg~y~~~~~ 150 (495)
+++++|+++.++.++++++.++|+|+|..++......+++. .+++|++++++.++.+++++|+++++|++||.|.|+++
T Consensus 3 ~~~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~GG~y~y~~~ 82 (445)
T PRK11357 3 SQELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGADYVYLKN 82 (445)
T ss_pred cccccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCceeeHHH
Confidence 45799999999999999999999999999998776634455 88999999999999999999999999999999999999
Q ss_pred HhchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhh
Q 011037 151 ELGDFVAYIAAGNIL-LEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTR 229 (495)
Q Consensus 151 ~~g~~~g~~~g~~~~-l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~ 229 (495)
.+||.+||+.||..+ .......+..+...++|+....+ . .......+.++++.+++.+|.+|+|
T Consensus 83 ~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~-~--------------~~~~~~~~~~~~~~~~~~ln~~gv~ 147 (445)
T PRK11357 83 AGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTP-I--------------DPLLGKFIAAGLIIAFMLLHLRSVE 147 (445)
T ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-C--------------chHHHHHHHHHHHHHHHHHHHhhhh
Confidence 999999999999744 45556667777778888765433 0 0111345667777888899999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhheeccccCCCCC---C--CCCC-hhhHHHHHHHHHHHhhchhHHHHhhhhhcCCCCc
Q 011037 230 RSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLDP---F--LPYG-TEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRD 303 (495)
Q Consensus 230 ~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~---~--~~~~-~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~ 303 (495)
..+|++.+++.++++.++++++.++...+.+|+.. . ...+ +.+++.++...+|+|.|+|.+++++||+|||+||
T Consensus 148 ~~~~v~~~~~~~~~~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~ 227 (445)
T PRK11357 148 GGAAFQTLITIAKIIPFTIVIGLGIFWFKAENFAAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGEIKNPGKT 227 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCcccccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCcccc
Confidence 99999999999999887777666554322222221 1 1112 5678888999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcccccccc-ccHHHHHHHHh--CchHHHHHHHHHHHHHHHHHHHHHhhchhHHH
Q 011037 304 IPIGLVGSMCMITAVYCLMALALTMMVKYTEIDM-NAAYSIAFRQI--GMNWAKYLVSVCALKGMTTSLLVGSLGQARYT 380 (495)
Q Consensus 304 ~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~--~~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l 380 (495)
+||++..++.++.++|++.+.+.....|.+++.. ++|+.++++.. .+++...++.+..+++.+++.++.+.+.+|++
T Consensus 228 iP~Ai~~~~~i~~~~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~ 307 (445)
T PRK11357 228 MPRALIGSCLLVLVLYTLLALVISGLMPFDKLANSETPISDALTWIPALGSTAGIFVAITAMIVILGSLSSCVMYQPRLE 307 (445)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcCCchHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 9999999999999999999999888888887754 46888887754 34556667777888889999999999999999
Q ss_pred HHHHhcCCCchhhhcccCccccch-hHHHHHHHHHHHH
Q 011037 381 TQIARAHMIPPWHNSILEFKWKRM-DWLCGNHCTLVFG 417 (495)
Q Consensus 381 ~~~ardg~lP~~~~~~~~~~~p~~-~~i~~~~~~~~~~ 417 (495)
|+|||||.+|++|+|+|||+++|+ ++++..++..++.
T Consensus 308 ~a~ardg~lp~~~~~v~~~~~tP~~a~l~~~~~~~~~~ 345 (445)
T PRK11357 308 YAMAKDNLFFKCFGHVHPKYNTPDVSIILQGALGIFFI 345 (445)
T ss_pred HHHHhcCCchHHHHHhCCCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999998766555 6666666655443
No 20
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=100.00 E-value=6.4e-46 Score=386.35 Aligned_cols=378 Identities=19% Similarity=0.240 Sum_probs=288.3
Q ss_pred cCccccccCCHhHHHHHHhhhhhhhhhhhccHHhHHhccCh-H-HHHHHHHHHHHHHHHHHHHhhhhhccccccchhHhH
Q 011037 71 SKQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGP-A-IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFL 148 (495)
Q Consensus 71 ~~~~l~r~l~~~~~~~l~~~~~ig~g~~~~~~~~~~~~~G~-~-~~~~~li~~~~~~~~~~~~ael~s~~P~~Gg~y~~~ 148 (495)
++++++|+++.++++++++++++|+|+|..++..+.. +|+ + .+++|++++++.++.+++++|+++++|++||.|.|+
T Consensus 36 ~~~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~-~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~sGG~y~~~ 114 (501)
T TIGR00911 36 EAVALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKN-AGSVGLALIMWAVCGIFSIVGALVYAELGTTIPKSGGEYNYI 114 (501)
T ss_pred cccccCccccHhHhhHhheeceEEeeEeecHHHHHhh-CCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhH
Confidence 4567999999999999999999999999999998887 776 3 568899999999999999999999999999999999
Q ss_pred HHHhchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-hhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhh
Q 011037 149 RVELGDFVAYIAAGNILLE-AVVGAAGLARSWSSYLAS-MIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMS 226 (495)
Q Consensus 149 ~~~~g~~~g~~~g~~~~l~-~~~~~a~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 226 (495)
++.+||.+||+.+|.+++. +....+..+..+++++.. ..+ +...+.+...+++++++++.+++|++
T Consensus 115 ~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~------------~~~~~~~~~~~i~~~~i~~~~~ln~~ 182 (501)
T TIGR00911 115 LEVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFP------------DCEVPEWAIRLVAVLCVLLLTLVNCL 182 (501)
T ss_pred HhHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------------CCCCchHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999988763 344566666666777543 222 11111112456778888899999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhheecc---ccCC--CCC-CC--CCChhhHHHHHHHHHHHhhchhHHHHhhhhhc
Q 011037 227 GTRRSSWLNWISSIVSSCVIVFVIIVGFVHG---KTTN--LDP-FL--PYGTEGVFEAAAVVYWSYTGFDMVATMAEETK 298 (495)
Q Consensus 227 g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~---~~~~--~~~-~~--~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k 298 (495)
|+|..+|++.+++.++++.++++++.++... +.++ ... +. ++++.++..++...+|+|.|+|.+++++||+|
T Consensus 183 Gvk~~~~~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~k 262 (501)
T TIGR00911 183 SVKWATRVQDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVK 262 (501)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHhc
Confidence 9999999999999999988877776655432 1111 111 11 13456788899999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccccccccHHHHH-HHHhCchHHHHHHHHHHHHHHHHHHHHHhhchh
Q 011037 299 KPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIA-FRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQA 377 (495)
Q Consensus 299 ~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~s 377 (495)
||+|++||++..+..+++++|++..++.....|.+++..+.+.... .+...+ ....++.+.+.++.+++.++.+++.|
T Consensus 263 nP~r~iPrAi~~s~~~v~~~Y~l~~~a~~~~~~~~~l~~~~~~~~~~~~~~~g-~~~~~i~~~~~is~~~~~~~~~~~~s 341 (501)
T TIGR00911 263 NPYRTLPIAIIISMPIVTFIYVLTNIAYFTVLSPEELLASLAVAVDFGERLLG-VMSWAMPALVGLSCFGSVNGSLFSSS 341 (501)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcChHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998888888877654433333 333322 55677888888899999999999999
Q ss_pred HHHHHHHhcCCCchhhhcccCccccch-hHHHHHHHHHHHHHhhcCcCcccccccccchhHHHHHHHHHHHHHHHHhHHH
Q 011037 378 RYTTQIARAHMIPPWHNSILEFKWKRM-DWLCGNHCTLVFGDFRNGIAPETTCSKTLGSSSGSMVAIIVNCNEFISHRLI 456 (495)
Q Consensus 378 R~l~~~ardg~lP~~~~~~~~~~~p~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (495)
|++++|||||.+|++|+|+|||+++|. ++++..++..+... . .+.. .++.+
T Consensus 342 R~l~a~ardg~lP~~~~~v~~~~~~P~~all~~~~i~~l~~~-~----~~~~----------~l~~~------------- 393 (501)
T TIGR00911 342 RLFFVGGREGHLPSLLSMIHVKRLTPLPSLLIVCTLTLLMLF-S----GDIY----------SLINL------------- 393 (501)
T ss_pred HHHHHHHhcCCccHHHHHhcCCCCCCHHHHHHHHHHHHHHHc-c----CCHH----------HHHHH-------------
Confidence 999999999999999999998876555 66555444433211 1 1110 00110
Q ss_pred HhhchhhhHHHHhhhhhhheeeccCcccccCCCCCc
Q 011037 457 GLFGIFEVHHLQCSNACLLLVSWPSCNLRCGSSEPR 492 (495)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~ 492 (495)
......+.|.+...+.+.+|+++||.+|++|.|.
T Consensus 394 --~~~~~~i~y~l~~~a~i~lR~~~p~~~rp~r~p~ 427 (501)
T TIGR00911 394 --ISFANWLFNALAVAGLLWLRYKRPEMNRPIKVPL 427 (501)
T ss_pred --HHHHHHHHHHHHHHHHHheeccCCCCCCCccCch
Confidence 0011112456666678889999999988777663
No 21
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=100.00 E-value=3.4e-46 Score=386.84 Aligned_cols=322 Identities=16% Similarity=0.201 Sum_probs=269.3
Q ss_pred cccCCHhHHHHHHhhhhhhhhhhhccHHhHHhccChH-HHHHHHHHHHHHHHHHHHHhhhhhcccc-ccchhHhHHHHhc
Q 011037 76 QKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPV-AGGSFSFLRVELG 153 (495)
Q Consensus 76 ~r~l~~~~~~~l~~~~~ig~g~~~~~~~~~~~~~G~~-~~~~~li~~~~~~~~~~~~ael~s~~P~-~Gg~y~~~~~~~g 153 (495)
||+++.+|+.+++++.++|+|+|..++..+.. +||. .+++|++++++.++++++++|+++++|+ .||.|.|+++.+|
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~-~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG~~~~~~~~~~g 79 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALAT-GGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSGSFATYASRFVD 79 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHHHh-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcC
Confidence 58999999999999999999999999999988 9986 7999999999999999999999999995 5577789999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhhHH
Q 011037 154 DFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSW 233 (495)
Q Consensus 154 ~~~g~~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~ 233 (495)
|.+||++||.+|++++...+.+....+.++..+.+ +.+ ...+..+++++++++|++|+|..++
T Consensus 80 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~-----~~~~~~~~~~~~~~in~~gv~~~~~ 142 (478)
T TIGR00913 80 PAFGFAVGWNYWLQWLIVLPLELVTASMTIQYWTD------------KVN-----PAVWIAIFYVFIVIINLFGVKGYGE 142 (478)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC------------CCC-----HHHHHHHHHHHHHHHHHhcchHHHH
Confidence 99999999999999999989888888887765432 111 1233345667888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhheec--ccc-----------CCCCCCCCC----ChhhHHHHHHHHHHHhhchhHHHHhhhh
Q 011037 234 LNWISSIVSSCVIVFVIIVGFVH--GKT-----------TNLDPFLPY----GTEGVFEAAAVVYWSYTGFDMVATMAEE 296 (495)
Q Consensus 234 ~~~~~~~~~l~~~~~~~i~~~~~--~~~-----------~~~~~~~~~----~~~~~~~~~~~~~~~f~G~e~~~~~a~E 296 (495)
++.+++.++++.++.+++.++.. .+. .+..++.+. .+.++..++...+|+|.|+|.+++++||
T Consensus 143 ~~~~~~~~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E 222 (478)
T TIGR00913 143 AEFWFSSIKILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGE 222 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHh
Confidence 99999988887766655544321 110 111123222 2677888999999999999999999999
Q ss_pred hcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcccccc--c--------cccHHHHHHHHhCchHHHHHHHHHHHHHHH
Q 011037 297 TKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEI--D--------MNAAYSIAFRQIGMNWAKYLVSVCALKGMT 366 (495)
Q Consensus 297 ~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~--~--------~~~p~~~~~~~~~~~~~~~~~~~~~~~s~~ 366 (495)
+|||+||+||+++.+..++.++|++..++.....|+++. . .++|+..+++..+.++...++.++++++.+
T Consensus 223 ~knP~r~iPrai~~~~~~~~~~Y~l~~~~~~~~~p~~~~~l~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~s~~ 302 (478)
T TIGR00913 223 AANPRKSIPRAAKRTFWRILVFYILTLFLIGFLVPYNDPRLLSSSSSSDSAASPFVIAIQNHGIKVLPHIFNAVILISVL 302 (478)
T ss_pred hcChhhHHHHHHHHHHHHHHHHHHHHHHHheeeccCCChhhcccccCCCcCCCcHHHHHHHcCCchHhHHHHHHHHHHHH
Confidence 999999999999999999999999998887777776542 1 126888778888888888999999999999
Q ss_pred HHHHHHhhchhHHHHHHHhcCCCchhhhcccCccccchhHHHHHHHHHH
Q 011037 367 TSLLVGSLGQARYTTQIARAHMIPPWHNSILEFKWKRMDWLCGNHCTLV 415 (495)
Q Consensus 367 ~~~~~~~~~~sR~l~~~ardg~lP~~~~~~~~~~~p~~~~i~~~~~~~~ 415 (495)
++.++.+++.||++|+|||||.+|++|+|+||++.|.+++++..++..+
T Consensus 303 ~~~~~~~~~~sR~l~a~ardg~lP~~f~k~~~~~~P~~Ai~~~~~~~~l 351 (478)
T TIGR00913 303 SAANSSLYASSRTLYALAHQGLAPKIFAYVDRRGVPYVAVIVSSLFGLL 351 (478)
T ss_pred HHHHhhHHHHHHHHHHHHhCCcccHHHHhhCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999888777788777666543
No 22
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=4.7e-47 Score=372.44 Aligned_cols=378 Identities=21% Similarity=0.299 Sum_probs=310.6
Q ss_pred cCccccccCCHhHHHHHHhhhhhhhhhhhccHHhHHhccCh-H-HHHHHHHHHHHHHHHHHHHhhhhhccccccchhHhH
Q 011037 71 SKQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGP-A-IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFL 148 (495)
Q Consensus 71 ~~~~l~r~l~~~~~~~l~~~~~ig~g~~~~~~~~~~~~~G~-~-~~~~~li~~~~~~~~~~~~ael~s~~P~~Gg~y~~~ 148 (495)
++.+++|+++.+..+.+.+++++|+|+|..+..+... +|+ + ++..|+.+++++...+++|+||++.+|++||.|.|+
T Consensus 6 ~~~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~-~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksGgd~ayi 84 (479)
T KOG1287|consen 6 EEVQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLAN-TGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSGGDYAYI 84 (479)
T ss_pred ccccccceeeeecceeEEEEeeEecccccCcHHHHHc-CCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcchhhH
Confidence 3446799999999999999999999999999999988 776 4 888899999999999999999999999999999999
Q ss_pred HHHhchhHHHHHHHHHHHHHH-HHHHHHHHHHHHH-HHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhh
Q 011037 149 RVELGDFVAYIAAGNILLEAV-VGAAGLARSWSSY-LASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMS 226 (495)
Q Consensus 149 ~~~~g~~~g~~~g~~~~l~~~-~~~a~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 226 (495)
.+++||.+||...|.-++... ..++..+..+++| ++..++ ..+.......+++.+++++++++|+.
T Consensus 85 ~~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp------------~c~~p~~~~~lla~~~l~~lt~~n~~ 152 (479)
T KOG1287|consen 85 SEAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFP------------LCDVPRVASKLLAAALLVLLTLINSF 152 (479)
T ss_pred HHHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCC------------CCCCchHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999997776554 4559999999999 555443 11222223668899999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhheec---cccCCCCCC-CC---CChhhHHHHHHHHHHHhhchhHHHHhhhhhcC
Q 011037 227 GTRRSSWLNWISSIVSSCVIVFVIIVGFVH---GKTTNLDPF-LP---YGTEGVFEAAAVVYWSYTGFDMVATMAEETKK 299 (495)
Q Consensus 227 g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~---~~~~~~~~~-~~---~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~ 299 (495)
.+|+..++|.+++..|++.+.++++.++.. ++.+|.... +. .+...+..++...+|+|.|||...+.+||+||
T Consensus 153 ~V~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~~~~~g~i~lafysglfa~~GWd~lN~vteEikn 232 (479)
T KOG1287|consen 153 SVKWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTEEIKN 232 (479)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhchheeEecccccccccccccCcCchHHHHHHHHHhhhcccCchhhccchHhhcC
Confidence 999999999999999999999999988874 333433211 11 22345778888999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccccccccHHHH-HHHHhCchHHHHHHHHHHHHHHHHHHHHHhhchhH
Q 011037 300 PSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSI-AFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQAR 378 (495)
Q Consensus 300 p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~sR 378 (495)
|+||+|||+..++.++++.|++.+++...+.+.|++..++.... ..+..++.+. +++-+.+.++.+++.++.+++.||
T Consensus 233 P~ktLP~Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR 311 (479)
T KOG1287|consen 233 PRRTLPRAILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSR 311 (479)
T ss_pred ccccchHHHHHhhHHHHHHHHHhHhheeEecCHHHhcccchHHHHHHHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHH
Confidence 99999999999999999999999999999999988855444443 4456666666 999999999999999999999999
Q ss_pred HHHHHHhcCCCchhhhcccCccccch-hHHHHHHHHHHHHHhhcCcCcccccccccchhHHHHHHHHHHHHHHHHhHHHH
Q 011037 379 YTTQIARAHMIPPWHNSILEFKWKRM-DWLCGNHCTLVFGDFRNGIAPETTCSKTLGSSSGSMVAIIVNCNEFISHRLIG 457 (495)
Q Consensus 379 ~l~~~ardg~lP~~~~~~~~~~~p~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (495)
.++++||||++|+.|++.|++..+|. ++++.+..+.+..+... ..-+++
T Consensus 312 ~~~~~areG~LP~~~s~i~~~~~TP~~allf~~~~~i~~~~~~d------------------------------~~~LIn 361 (479)
T KOG1287|consen 312 LFYAGAREGHLPAFFSMISVRRFTPRPALLFSGLLSIVLSLIGD------------------------------FDQLIN 361 (479)
T ss_pred HHHHHHHccCccHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhh------------------------------HHHHHH
Confidence 99999999999999999999997777 55555544444332210 122334
Q ss_pred hhchhhhHHHHhhhhhhheeeccCcccccCCCCCc
Q 011037 458 LFGIFEVHHLQCSNACLLLVSWPSCNLRCGSSEPR 492 (495)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~ 492 (495)
...+..++++.+...+++++|+++|+++|+.|.|-
T Consensus 362 y~sf~~~l~~~l~~~gll~lR~k~p~~~rPiKvpl 396 (479)
T KOG1287|consen 362 YVSFAYWLFRGLSMAGLLWLRWKHPPLPRPIKVPL 396 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCCCEeeee
Confidence 45555667788888999999999999887777663
No 23
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=100.00 E-value=7.7e-46 Score=379.40 Aligned_cols=314 Identities=19% Similarity=0.264 Sum_probs=270.4
Q ss_pred HHhhhhhhhhhhhccHHhHHhccChHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHhHHHHhchhHHHHHHHHHHH
Q 011037 87 LCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNILL 166 (495)
Q Consensus 87 l~~~~~ig~g~~~~~~~~~~~~~G~~~~~~~li~~~~~~~~~~~~ael~s~~P~~Gg~y~~~~~~~g~~~g~~~g~~~~l 166 (495)
+++++++|+|+|..++..+.. +||..+++|++++++.++.+++++|+++++|++||.|.|++|.+||.+||.+||.+|+
T Consensus 2 ~~ig~~IGsGif~~~g~~~~~-aG~~~ll~~~i~gi~~~~~al~~aEL~s~~P~~Gg~y~y~~~~~G~~~gf~~gw~~~~ 80 (446)
T PRK10197 2 LSIAGVIGASLFVGSSVAIAE-AGPAVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYWW 80 (446)
T ss_pred eeecchhHhHHHHHhHHHHHh-cChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHcChHHHHHHHHHHHH
Confidence 578899999999999999988 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 011037 167 EAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVI 246 (495)
Q Consensus 167 ~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~l~~~ 246 (495)
+++...+.+....+.++..+.+ +.+ ...++.+++++++.+|++|+|..+++|.+++.+|++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~------------~~~-----~~~~~~~~l~~~~~lN~~gv~~~~~i~~~~~~~ki~~l 143 (446)
T PRK10197 81 FWVLVIPLEANIAAMILHSWVP------------GIP-----IWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKVIAI 143 (446)
T ss_pred HHHHHHHHHHHHHHHHHHhccc------------cCc-----HHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHH
Confidence 9998888887666666554322 111 34678888999999999999999999999999999887
Q ss_pred HHHHHhheec--cc-----cCCC------CCCCCCChhhHHHHHHHHHHHhhchhHHHHhhhhhcCCCCchhHHHHHHHH
Q 011037 247 VFVIIVGFVH--GK-----TTNL------DPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMC 313 (495)
Q Consensus 247 ~~~~i~~~~~--~~-----~~~~------~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~~p~ai~~~~~ 313 (495)
+.+++.++.. +. ..+. .++.|+++.+++.++...+|+|.|+|.+++++||+|||+|++||++..+..
T Consensus 144 i~~ii~~~~~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPrai~~~~~ 223 (446)
T PRK10197 144 LAFIFLGAVAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNSVIW 223 (446)
T ss_pred HHHHHHHHHHhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhHHHHHHHHHH
Confidence 7776655431 11 1111 134466788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccccccc--ccHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHhcCCCch
Q 011037 314 MITAVYCLMALALTMMVKYTEIDM--NAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPP 391 (495)
Q Consensus 314 ~~~~~y~~~~~~~~~~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~~~ardg~lP~ 391 (495)
.+.++|++..+......|+++.+. .+++..+++..++++...++++.++++.+++.++.+++.||++|+|||||.+||
T Consensus 224 ~i~i~Yil~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ardg~lP~ 303 (446)
T PRK10197 224 RISIFYLCSIFVVVALIPWNMPGLKAVGSYRSVLELLNIPHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPA 303 (446)
T ss_pred HHHHHHHHHHHHHheecCcCcccccccCcHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCH
Confidence 999999999999888888876543 256777888889899999999999999999999999999999999999999999
Q ss_pred hhhcccCccccchhHHHHHHHHHHHHH
Q 011037 392 WHNSILEFKWKRMDWLCGNHCTLVFGD 418 (495)
Q Consensus 392 ~~~~~~~~~~p~~~~i~~~~~~~~~~~ 418 (495)
+|+|+||++.|.++++++.++..+..+
T Consensus 304 ~~~~~~~~~~P~~Ail~~~~~~~l~~l 330 (446)
T PRK10197 304 VMGKINRSKTPYVAVLLSTGAAFLTVV 330 (446)
T ss_pred HHHhhCcCCCcHHHHHHHHHHHHHHHH
Confidence 999999887788888887665554433
No 24
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=100.00 E-value=2.4e-45 Score=379.09 Aligned_cols=366 Identities=19% Similarity=0.250 Sum_probs=296.4
Q ss_pred ccccCCHhHHHHHHhhhhhhhhhhhccHHhHHhccChH-HHHHHHHHHHHHHHHHHHHhhhhhcccc-ccchhHhHHHHh
Q 011037 75 LQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPV-AGGSFSFLRVEL 152 (495)
Q Consensus 75 l~r~l~~~~~~~l~~~~~ig~g~~~~~~~~~~~~~G~~-~~~~~li~~~~~~~~~~~~ael~s~~P~-~Gg~y~~~~~~~ 152 (495)
++|++|.++++++++++++|+|+|..++..... +||. .+++|++++++.++.+++++|+++++|+ +||.|.|+++.+
T Consensus 5 ~~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~-~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sGG~y~y~~~~~ 83 (473)
T TIGR00905 5 KSKKLGLFALTALVIGSMIGSGIFSLPQNLASV-AGPGAVIIGWIITGVGMLALAFVFAILATKKPELDGGIYAYAREGF 83 (473)
T ss_pred cCCCccHHHHHHHHHHHHHhHHHHHhHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHc
Confidence 478999999999999999999999999987776 8886 7899999999999999999999999999 999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhhH
Q 011037 153 GDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSS 232 (495)
Q Consensus 153 g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~ 232 (495)
||.+||+.||.+|+.++......+....+++...++.... .......+++++++++.+.+|++|+|..+
T Consensus 84 G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~-----------~~~~~~~~~~~~~~~~~~~ln~~Gi~~~~ 152 (473)
T TIGR00905 84 GPYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFGS-----------GNPVPSILGASVLLWVFTFLVLRGVRQAA 152 (473)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-----------CCcHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 9999999999999998888777777777777766541100 01112345677778889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhheeccccCCCC-CC----C---CCChhhHHHHHHHHHHHhhchhHHHHhhhhhcCCCCch
Q 011037 233 WLNWISSIVSSCVIVFVIIVGFVHGKTTNLD-PF----L---PYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDI 304 (495)
Q Consensus 233 ~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~-~~----~---~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~~ 304 (495)
|++.+...++++.++++++.++...+.+++. ++ . ++.+.+++.++...+|+|.|+|.+++++||+|| +|++
T Consensus 153 ~i~~~~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~-~r~i 231 (473)
T TIGR00905 153 FINTITTIAKLIPLFLFIIIGWFWFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKN-KSDV 231 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc-cccc
Confidence 9999999999988877777665433322221 11 1 124567888899999999999999999999999 9999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcccccccc-ccH-HHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhchhHHHHH
Q 011037 305 PIGLVGSMCMITAVYCLMALALTMMVKYTEIDM-NAA-YSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQ 382 (495)
Q Consensus 305 p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~-~~p-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~~ 382 (495)
||++..+..+++++|++...+.....|.+++.+ ++| ..++.+...+++...++.+..+++.+++.++.+.+.||++|+
T Consensus 232 Prai~~~~~i~~~~Yil~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~i~~~is~~~~~~~~~~~~sR~~~a 311 (473)
T TIGR00905 232 GKATVLGTLGALVIYILITLLSLGVLPQQELANLPNPSMAAVLEMIVGKWGAVLISLGLIISVLGSLLSWTMLAAEVPFS 311 (473)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhhCCCchHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888888887753 467 677777777788888999999999999999999999999999
Q ss_pred HHhcCCCchhhhcccCccccchhHHHHHHHHHHHHHhhcCcCcccccccccchhHHHHHHHHHHHHHHHHhH
Q 011037 383 IARAHMIPPWHNSILEFKWKRMDWLCGNHCTLVFGDFRNGIAPETTCSKTLGSSSGSMVAIIVNCNEFISHR 454 (495)
Q Consensus 383 ~ardg~lP~~~~~~~~~~~p~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (495)
|||||.+|++|+|+||++.|.+++++..++..++.+..... .+........++.+.++.|.+.++..+..|
T Consensus 312 mardg~lP~~~~~v~~~~tP~~Ai~~~~~i~~~~~~~~~~~-~~~~~~l~~~~~~~~~i~y~~~~~a~~~lr 382 (473)
T TIGR00905 312 AAKDGLFPKIFGRVNKNGAPSVALLLTNILIQLFLLLTLLT-SSAYNVLVSLAVVMILVPYLLSAAYLLKLA 382 (473)
T ss_pred HHhCCChhHHHHhhCccCCCHHHHHHHHHHHHHHHHHHHcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998767778777776665444332221 223334444556777777777776655444
No 25
>PRK11021 putative transporter; Provisional
Probab=100.00 E-value=1e-44 Score=368.32 Aligned_cols=354 Identities=17% Similarity=0.179 Sum_probs=274.2
Q ss_pred CCHhHHHHHHhhhhhhhhhhhccHHhHHhccChHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHhHHHHhchhHHH
Q 011037 79 LTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAY 158 (495)
Q Consensus 79 l~~~~~~~l~~~~~ig~g~~~~~~~~~~~~~G~~~~~~~li~~~~~~~~~~~~ael~s~~P~~Gg~y~~~~~~~g~~~g~ 158 (495)
++.|+.+++.+++++|+|+|..++..... +||..+++|++++++.++.+++++|+++++|++||.|.|+++.+||.+||
T Consensus 1 ~g~~~~~~l~~g~~IGsGif~~~g~~~~~-aG~~~~~~~~i~~~~~~~~al~~aEl~s~~P~aGG~y~y~~~~~G~~~gf 79 (410)
T PRK11021 1 LGLWQGIGLLSTSLLGTGVFAVPALAALV-AGNNSLWAWPLLILLIFPIAIVFARLGRHFPHAGGPAHFVGMAFGPRLGR 79 (410)
T ss_pred CcHHHHHHHHHHHHHhhHHHHhHHHHHHh-cCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHhHHHHhCchhHH
Confidence 57899999999999999999999999888 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Q 011037 159 IAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWIS 238 (495)
Q Consensus 159 ~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~ 238 (495)
..||.+++.+.............++...++ . .. .....+.++++++++++|++|+|..+|++.+.
T Consensus 80 ~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-~------------~~--~~~~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~ 144 (410)
T PRK11021 80 VTGWLFLSVIPVGLPAALQIAAGFGQALFG-W------------SS--WQLLLAELLTLALLWLLNLRGASSSANLQTVI 144 (410)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHcC-C------------CC--chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999987776655554455566665544 1 01 11335667778889999999999999999988
Q ss_pred HHHHHHHHHHHHHhheeccccCCC--CCCCCCChhhHHHHHHHHHHHhhchhHHHHhhhhhcCCCCchhHHHHHHHHHHH
Q 011037 239 SIVSSCVIVFVIIVGFVHGKTTNL--DPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMIT 316 (495)
Q Consensus 239 ~~~~l~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~~p~ai~~~~~~~~ 316 (495)
.++.+..++.+... ...+..+. .++.+.++.++..++...+|+|.|+|.+++++||+|||+||+||++..+..++.
T Consensus 145 ~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPrAi~~~~~~~~ 222 (410)
T PRK11021 145 ALLIVALVVAIWWA--GDIKPADIPFPAPGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPRALMIGLLLAG 222 (410)
T ss_pred HHHHHHHHHHHHHH--cCCchhcCCCCCCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccHHHHHHHHHHH
Confidence 76554433222211 11122222 223345788899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccc-ccccHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHhcCCCchhhhc
Q 011037 317 AVYCLMALALTMMVKYTEI-DMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPPWHNS 395 (495)
Q Consensus 317 ~~y~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~~~ardg~lP~~~~~ 395 (495)
++|++.++......+.++. ..++|..+++++..+++...++.+..+++.+++.++.+.+.||++++|||||.+||+|+|
T Consensus 223 ~lYil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ii~i~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~~~k 302 (410)
T PRK11021 223 LVYWACTVVVLHFPAYGDKQAAAASLPGIFVQLFGGYALWVICVIGYLACFASVNIYTQSFARLVWSQAREGRPPSYLAR 302 (410)
T ss_pred HHHHHHHHHHHhcCCCcchhhccccHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHh
Confidence 9999999887666655443 234677777776655556677888888999999999999999999999999999999999
Q ss_pred ccCccccchhHHHHHHHHHHHHHhhcCcCcccccccccchhHHHHHHHHHHHHHHH
Q 011037 396 ILEFKWKRMDWLCGNHCTLVFGDFRNGIAPETTCSKTLGSSSGSMVAIIVNCNEFI 451 (495)
Q Consensus 396 ~~~~~~p~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (495)
+||++.|.++++++.++..+..++..... .........++...++.|.+.++..+
T Consensus 303 ~~~~~tP~~ail~~~~i~~~~~l~~~~~~-~~~~~l~~~~~~~~li~y~~~~~a~~ 357 (410)
T PRK11021 303 LSARGVPVNALNAVLGCCAVSILLIYALG-LNLEALIAYANGIFVLIYLLCMLAAC 357 (410)
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99887777787777665555443321111 12222333445556666666655543
No 26
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=100.00 E-value=1.7e-44 Score=372.85 Aligned_cols=378 Identities=17% Similarity=0.159 Sum_probs=279.0
Q ss_pred ccCccccccCCHhHHHHHHhhhh-hhhhhhhccHHhHHhccChHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHhH
Q 011037 70 ESKQPLQKCLTWWDLTWLCFGSV-VGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFL 148 (495)
Q Consensus 70 ~~~~~l~r~l~~~~~~~l~~~~~-ig~g~~~~~~~~~~~~~G~~~~~~~li~~~~~~~~~~~~ael~s~~P~~Gg~y~~~ 148 (495)
+++|++||+++.++.++++++.+ ++.|++..++..+.. +||..+++|+++++..++++++++||++++|++||.|+|+
T Consensus 6 g~~~~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~-~Gp~~~~~~li~~i~~l~~als~aEL~s~~P~aGG~Y~~~ 84 (475)
T TIGR03428 6 GYQPQLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGF-GGPAFFWTWPVVFVGQLLVALNFAELAARYPISGAIYQWS 84 (475)
T ss_pred CCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCcHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHH
Confidence 38899999999999999999986 789999999999988 9999999999999999999999999999999999999999
Q ss_pred HHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC---C-cccccccccccCCCCCchhHHHHHHHHHHHHHH
Q 011037 149 RVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSN---N-SDLLRFKVDCFADGFNLLDPVAVLILLVCNGIA 224 (495)
Q Consensus 149 ~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 224 (495)
++.+||.+||++||.+++++....+........++....... . ++++. .+...++..+++++++++++++|
T Consensus 85 ~~~~g~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~in 159 (475)
T TIGR03428 85 RRMGGEVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIGEDPTLT-----SPSGAANAVLLGSVLLVLTTVIN 159 (475)
T ss_pred HHHcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccc-----CCCchHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998777766666655554432100 0 01110 01111224567778888999999
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHhheeccccCC-------CCCCCCCChhhHHHHHHHHHHHhhchhHHHHhhhhh
Q 011037 225 MSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHGKTTN-------LDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEET 297 (495)
Q Consensus 225 ~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~ 297 (495)
++|+|..++++.+..+++++.++++++.++...+.++ ..+..+.....++.+....+|+|.|+|.+++++||+
T Consensus 160 ~~g~k~~~~i~~~~~~~~i~~l~~iii~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE~ 239 (475)
T TIGR03428 160 CIGVEWMSRVNTIGVTCEIVGVLAVIGVLFTHAQRGPGVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGELSEET 239 (475)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecCCCCCCccHHHHHHHHHHHHHHHhcCcchHHHHHHHh
Confidence 9999999999999999998877766665554332111 011112223456778888899999999999999999
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccc--cccccHHHHHHH-HhCchHHHHHHHHHHHHHHHHHHHHHhh
Q 011037 298 KKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTE--IDMNAAYSIAFR-QIGMNWAKYLVSVCALKGMTTSLLVGSL 374 (495)
Q Consensus 298 k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~--~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 374 (495)
|||+|++||++..++.++.++|.+..+......+..+ ...+++...++. ..+.++.. .+.+.++++.+++.++.++
T Consensus 240 knP~r~iPrai~~s~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~-~~~~~~~i~~~~~~~~~~~ 318 (475)
T TIGR03428 240 KNPRRVAPRTILTALSVSALGGGLMILGALMAAPSLTDGRLAAEGLPYVLSAVLDSPWGT-VLLVDVAIAILVCTLAIQT 318 (475)
T ss_pred cCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHhhcCCCchHHHHHHHhCcHhHH-HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998888887777666555321 111222223333 44545443 4556667789999999999
Q ss_pred chhHHHHHHHhcCCCc--hhhhcccCccc-cchhHHHHHHHHHHHHHhhcCcCcccccccccchhHHHHHHHHHHHHHHH
Q 011037 375 GQARYTTQIARAHMIP--PWHNSILEFKW-KRMDWLCGNHCTLVFGDFRNGIAPETTCSKTLGSSSGSMVAIIVNCNEFI 451 (495)
Q Consensus 375 ~~sR~l~~~ardg~lP--~~~~~~~~~~~-p~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (495)
+.||++|++||||.+| ++|+|+|||++ |.++.++..+++.++.++..+. .+..+.....++.+.++.|.+..+..+
T Consensus 319 ~~sR~~~a~Ardg~lP~s~~~~~v~~r~~tP~~A~~l~~~i~~~~~~i~~~~-~~af~~l~s~~~~~~~~~Y~~~~~~~l 397 (475)
T TIGR03428 319 AGSRLMFSMARDGKLPASAQLSRVHPRTGTPILPSIVIGVLCIGILLINVGN-SALFATLASVCIVLIYLAYLLVTVPLL 397 (475)
T ss_pred HHHHHHHHHHhcCCCcchHHhcccCCCCCCcHHHHHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 58999998755 5557777766666555543221 122233333445555666666555554
Q ss_pred HhHH
Q 011037 452 SHRL 455 (495)
Q Consensus 452 ~~~~ 455 (495)
.+|+
T Consensus 398 ~~~~ 401 (475)
T TIGR03428 398 LRRL 401 (475)
T ss_pred HHHH
Confidence 4443
No 27
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=3e-44 Score=352.63 Aligned_cols=354 Identities=18% Similarity=0.213 Sum_probs=296.8
Q ss_pred CCchhHhhhhhhccCccccccCCHhHHHHHHhhhhh-hhhhhhccHHhHHhccCh-HHHHHHHHHHHHHHHHHHHHhhhh
Q 011037 58 STDATELITLQQESKQPLQKCLTWWDLTWLCFGSVV-GSGIFVITGQEAKKHAGP-AIVLSYLASGLSALLSAFCYTEFA 135 (495)
Q Consensus 58 ~~~~~~~~~~~~~~~~~l~r~l~~~~~~~l~~~~~i-g~g~~~~~~~~~~~~~G~-~~~~~~li~~~~~~~~~~~~ael~ 135 (495)
+.|++++.+.+ +||++||++++|+.++++++.+- -.|+-.+....+.. +|| .+.|+|++++++.++++++++|++
T Consensus 31 ~~d~~~L~~lg--Ykqef~R~fs~~s~fg~sFs~~g~~~~i~tsm~~gl~~-gG~~~~vwgwlIa~~~~i~va~slaEl~ 107 (550)
T KOG1289|consen 31 DSDEELLAELG--YKQELKREFSLFSIFGISFSLMGLLPGIATSMAYGLGS-GGPPTLVWGWLIAGFFSICVALSLAELC 107 (550)
T ss_pred cCCHHHHHHcC--CchhhhhhhhHHHHHHHHHHHhcchhhhhhheeecccc-CChHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 33445555555 99999999999999999999773 24555555555554 555 599999999999999999999999
Q ss_pred hccccccchhHhHHH----HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhH
Q 011037 136 VEIPVAGGSFSFLRV----ELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDP 211 (495)
Q Consensus 136 s~~P~~Gg~y~~~~~----~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (495)
+.+|.+||.|.|+.. .+||..+|++||...+++..+.++...+.++.+..... ..++++ ..+..++.+
T Consensus 108 Sa~PtsGgLy~waa~lap~k~~~~~sw~~Gw~~~~g~~~~~aSi~~S~A~~i~~~v~-l~np~y-------~~~~~~~~~ 179 (550)
T KOG1289|consen 108 SAMPTSGGLYFWAAVLAPPKYGPFASWVTGWLNYLGQATGVASITYSLAQLILGAVS-LTNPNY-------EPTNYHQFG 179 (550)
T ss_pred hhCCCCCcHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHh-hcCCCC-------cccceEeeh
Confidence 999999999999985 67788899999999999999999999999999998887 555544 334456778
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhheec--------------cccCCCCCCCCCChhhHHHHH
Q 011037 212 VAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVH--------------GKTTNLDPFLPYGTEGVFEAA 277 (495)
Q Consensus 212 ~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~--------------~~~~~~~~~~~~~~~~~~~~~ 277 (495)
+..++.++..++|..+.|...+++.+...+.++.+++.+|...+. ++++|..+|.++||. ++.++
T Consensus 180 v~~ai~~v~~lln~~p~r~l~~I~~~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~sgw~~~G~a-fil~f 258 (550)
T KOG1289|consen 180 VFEAILFVHGLLNSLPTRVLARINSVSVYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYSGWKNNGWA-FILGF 258 (550)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecccccCCCCcchHH-HHHhh
Confidence 999999999999999999999999999999999888887766542 234455577666665 77789
Q ss_pred HHHHHHhhchhHHHHhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcccc-cc--cc--ccHHHHHHHHhCchH
Q 011037 278 AVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYT-EI--DM--NAAYSIAFRQIGMNW 352 (495)
Q Consensus 278 ~~~~~~f~G~e~~~~~a~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~-~~--~~--~~p~~~~~~~~~~~~ 352 (495)
....|.+.|+|+.+|++||+|||+|+.||+|+.++.+..++-.+..+.+....++| +. ++ .+|+++++.+.-++.
T Consensus 259 ~~~~wt~sGyDa~~H~aEE~~nAsk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~~v~ns~~g~p~~~i~~~~lg~k 338 (550)
T KOG1289|consen 259 FNPAWTMSGYDAAAHMAEETKNASKAAPRGIISSIAIGFILGWIIIIGIAYTIPDDLDAVLNSSLGQPIVQIYYQALGKK 338 (550)
T ss_pred ccceeEEeccCchHHHHHHhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHhcCCCCChHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999888888777743 22 22 379999988765555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHhcCCCc--hhhhcccCc-cccchhHHHHHHHHHHHHHhhcCc
Q 011037 353 AKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIP--PWHNSILEF-KWKRMDWLCGNHCTLVFGDFRNGI 423 (495)
Q Consensus 353 ~~~~~~~~~~~s~~~~~~~~~~~~sR~l~~~ardg~lP--~~~~~~~~~-~~p~~~~i~~~~~~~~~~~~~~~~ 423 (495)
....+....+++.+.+..+.+.+.||+.|+.||||.+| ++++|+||+ +.|.+++++.+++..+++++....
T Consensus 339 ~~v~~~~l~ii~~f~~gi~s~~a~SR~v~afaRDg~LP~S~~~~~v~~~t~~P~nAv~l~~i~s~llgll~L~s 412 (550)
T KOG1289|consen 339 GAVFLLSLIIIALFFMGISSLTASSRLVYAFARDGGLPFSKYLAKVNPQTKVPLNAVLLSCIISILLGLLILAS 412 (550)
T ss_pred ceEehhHHHHHHHHHhhHHHHHHHHHHHhhhhccCCCCCcceeeecCCCCCCcHHHHHHHHHHHHHHHHHHhhh
Confidence 55788888888899999999999999999999999999 999999999 667789999999888888776643
No 28
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=100.00 E-value=1.3e-43 Score=365.79 Aligned_cols=328 Identities=19% Similarity=0.284 Sum_probs=270.9
Q ss_pred ccCCHhHHHHHHhhhhhhhhhhhccHHhHHhccChH-HHHHHHHHHHHHHHHHHHHhhhhhccccc-cchhHhHHHHhch
Q 011037 77 KCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVA-GGSFSFLRVELGD 154 (495)
Q Consensus 77 r~l~~~~~~~l~~~~~ig~g~~~~~~~~~~~~~G~~-~~~~~li~~~~~~~~~~~~ael~s~~P~~-Gg~y~~~~~~~g~ 154 (495)
|++++++++++++++++|+|+|..++..... +||. .+++|++++++.++.+++++|+++++|++ ||.|.|+++.+||
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~-ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~gGG~y~y~~~~fG~ 79 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAG-AAAGAVLIGWVITGVGMLALAFSFQNLANKKPELDGGVYSYAKAGFGP 79 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHh-hchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHcCc
Confidence 7899999999999999999999999988877 8887 88899999999999999999999999986 5999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhhHHH
Q 011037 155 FVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWL 234 (495)
Q Consensus 155 ~~g~~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~ 234 (495)
..||+.||.+|+++.............++..+++... ........++..+++++++++|++|+|..+++
T Consensus 80 ~~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~-----------~~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i 148 (468)
T TIGR03810 80 FMGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFG-----------GGNNPPSIIGASVLLWCVHFLVLRGVEGAAFI 148 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----------CCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 9999999999999887766666655666655444110 00011123456667778999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhheeccccCCCCC---------C-CCCChhhHHHHHHHHHHHhhchhHHHHhhhhhcCCCCch
Q 011037 235 NWISSIVSSCVIVFVIIVGFVHGKTTNLDP---------F-LPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDI 304 (495)
Q Consensus 235 ~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~---------~-~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~~ 304 (495)
|.+++++|++.++++++.++...+.+++.. + ..+.+.++..++...+|+|.|+|.+++++||+|| +||+
T Consensus 149 ~~i~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~-~k~i 227 (468)
T TIGR03810 149 NTITTIAKLVPLFVFIVIGIFAFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEK-RSDV 227 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccC-cccc
Confidence 999999999888777776554322211110 0 1122456777888999999999999999999999 7999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcccccccc-ccH-HHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhchhHHHHH
Q 011037 305 PIGLVGSMCMITAVYCLMALALTMMVKYTEIDM-NAA-YSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQ 382 (495)
Q Consensus 305 p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~-~~p-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~~ 382 (495)
||++..+..++.++|++..+......|.+++.. ++| ...++++..+++...++.++++++.+++.++.+++.||++|+
T Consensus 228 p~ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a 307 (468)
T TIGR03810 228 GKATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHMVGTWGAVLINIGLIISILGAWLSWTLLPAEIPLL 307 (468)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888888877643 345 677777887788899999999999999999999999999999
Q ss_pred HHhcCCCchhhhcccCccccchhHHHHHHHHHHHH
Q 011037 383 IARAHMIPPWHNSILEFKWKRMDWLCGNHCTLVFG 417 (495)
Q Consensus 383 ~ardg~lP~~~~~~~~~~~p~~~~i~~~~~~~~~~ 417 (495)
|||||.+||+|+|+||++.|.++++++.++..++.
T Consensus 308 ~ardg~lP~~f~k~~~~~tP~~al~~~~~i~~~~~ 342 (468)
T TIGR03810 308 MAKDKLMPKYFGKENANGAPTNALWLTNGLIQIFL 342 (468)
T ss_pred HHhCCCccHHHHhhCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999988878888887766655443
No 29
>TIGR00930 2a30 K-Cl cotransporter.
Probab=100.00 E-value=2.2e-42 Score=375.48 Aligned_cols=366 Identities=14% Similarity=0.116 Sum_probs=283.4
Q ss_pred ccccccCCHhHHHHHH-hhhhhhhhhhhccHHhHHhccChH-HHHHHHHHHHHHHHHHHHHhhhhhc-cccccchhHhHH
Q 011037 73 QPLQKCLTWWDLTWLC-FGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVE-IPVAGGSFSFLR 149 (495)
Q Consensus 73 ~~l~r~l~~~~~~~l~-~~~~ig~g~~~~~~~~~~~~~G~~-~~~~~li~~~~~~~~~~~~ael~s~-~P~~Gg~y~~~~ 149 (495)
+..+|++|+++.+++. +++++|+|+|..++.+++. +|.. +++.|+++++++++++++++|++++ +|++||.|.|++
T Consensus 72 ~~~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~-aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aGG~Y~yis 150 (953)
T TIGR00930 72 PAGAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQ-AGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGGGAYYLIS 150 (953)
T ss_pred CCCCcccceeEeeeHhhhHhHheeeeeeeHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHH
Confidence 3456889999999998 9999999999999999988 8877 8999999999999999999999998 999999999999
Q ss_pred HHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhh
Q 011037 150 VELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTR 229 (495)
Q Consensus 150 ~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~ 229 (495)
|.+||.+|+.+||.+++++.+..+.++.++++++..++.. .+... . ....+...+++++++++++++|++|+|
T Consensus 151 ralGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~-~~~~~--~----~~~~~~~~iia~i~l~ll~~In~~Gvk 223 (953)
T TIGR00930 151 RSLGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRE-NGSKI--M----VDPINDIRIYGTVTVVVLLGISFAGME 223 (953)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccccc--c----cCccccchHHHHHHHHHHHHHHHhhHH
Confidence 9999999999999999999999999999999999988751 10000 0 011112457888999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhheecccc---------------CCCCCCCCCChhhHHHHHHHHHHHhhchhHHHHhh
Q 011037 230 RSSWLNWISSIVSSCVIVFVIIVGFVHGKT---------------TNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMA 294 (495)
Q Consensus 230 ~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a 294 (495)
+.+|++.++++++++.++.+++.++..... .|+.+..+.+..+++..+...+++|.|+|+.++++
T Consensus 224 ~~ak~q~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~s 303 (953)
T TIGR00930 224 WENKAQVLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANIS 303 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998888877766542110 01111112222347777777888999999999999
Q ss_pred hhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcccccccc-cc------------------HHHHH----HHH-hCc
Q 011037 295 EETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDM-NA------------------AYSIA----FRQ-IGM 350 (495)
Q Consensus 295 ~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~-~~------------------p~~~~----~~~-~~~ 350 (495)
||+|||+|++|||++.++.+++++|++.++++....+.+.... +. |.... +.. ...
T Consensus 304 gElKnP~r~IPratl~ai~i~~vlYllv~~~~~~~~~~d~~~~~~~~l~~~~~g~~~f~~~~~~p~~~gL~~~~~~~~~~ 383 (953)
T TIGR00930 304 GDLKDPQKAIPKGTLLAILTTTVVYLGSVVLFGACVVRDATGDKNDTLVTNCTSAACFSECAHNTCSYGLMNNLQVMSLV 383 (953)
T ss_pred HhccChhhhhHHHHHHHHHHHHHHHHHHHHHHHccccHhhhcccchhhhcccccchhhhhhcccchhhhhcchHHHHhhh
Confidence 9999999999999999999999999999988777776544321 11 11111 111 111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHhcCCCc--hhhhcccCcc-ccchhHHHHHHHHHHHHHhhcCcCccc
Q 011037 351 NWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIP--PWHNSILEFK-WKRMDWLCGNHCTLVFGDFRNGIAPET 427 (495)
Q Consensus 351 ~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~~~ardg~lP--~~~~~~~~~~-~p~~~~i~~~~~~~~~~~~~~~~~~~~ 427 (495)
.....++.++++++.+++.++++++++|++++|||||.+| ++|+|+|+++ .|.++++++.+++.++.++..
T Consensus 384 ~~~~~lI~ig~~~stlss~la~l~~asRvl~AmArDg~lP~l~~fakv~~k~~tP~~Alllt~iIa~l~ili~~------ 457 (953)
T TIGR00930 384 SPFPPLITAGIFSATLSSALASLVSAPRLFQALCKDNIYPFLQFFGKGYGKNGEPLRAYLLTAFIAEGFILIAE------ 457 (953)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhcccCCCCCCcHHHHHHHHHHHHHHHHHHh------
Confidence 2245788899999999999999999999999999999999 8999999875 455577777766666554421
Q ss_pred ccccccchhHHHHHHHHHHHHHHHH
Q 011037 428 TCSKTLGSSSGSMVAIIVNCNEFIS 452 (495)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (495)
......+.+...++.|.+.+++.+.
T Consensus 458 l~~ia~lis~~fLl~Y~lvnla~~~ 482 (953)
T TIGR00930 458 LNTIAPIISNFFLASYALINFSCFH 482 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222333455666666666666543
No 30
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=100.00 E-value=1.2e-42 Score=360.44 Aligned_cols=342 Identities=15% Similarity=0.170 Sum_probs=264.9
Q ss_pred ccCccccccCCHhHHHHHHhhhhh-hhhhhhccHHhHHhccChH-HHHHHHHHHHHHHHHHHHHhhhhhccccccchhHh
Q 011037 70 ESKQPLQKCLTWWDLTWLCFGSVV-GSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSF 147 (495)
Q Consensus 70 ~~~~~l~r~l~~~~~~~l~~~~~i-g~g~~~~~~~~~~~~~G~~-~~~~~li~~~~~~~~~~~~ael~s~~P~~Gg~y~~ 147 (495)
++++++||+++.++.++++++.+. ..|++...+..+.. +||. .+++|++++++.++.+++++||++++|++||.|.|
T Consensus 5 g~~~~l~r~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~~Gg~y~~ 83 (482)
T TIGR00907 5 GYKPELKREFSLWSIFGFAFSISNSWTGISTTYNYGLSS-GGAMSIVWGWIIAGAGSICIALSLAELSSAYPTSGGQYFW 83 (482)
T ss_pred CCcceeecccchhHHHHHHHHHHHHHHHHHHHHHHhhhc-CCccchhHHHHHHHHHHHHHHHHHHHHHhhCCCCccHHHH
Confidence 378899999999999999999663 37888887777766 8985 89999999999999999999999999999999999
Q ss_pred HHHHhc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHH
Q 011037 148 LRVELG----DFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGI 223 (495)
Q Consensus 148 ~~~~~g----~~~g~~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 223 (495)
++|.+| +..||++||.++++++...+......++++..... ...++ +....+.+...++.++++++++.+
T Consensus 84 ~~~~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~i 157 (482)
T TIGR00907 84 SAKLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVS-LTTPG-----REYIPTRWHIFGIMIGIHLIHALI 157 (482)
T ss_pred HHHhcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCC-----CCccccCchhhhhHHHHHHHHHHH
Confidence 999987 56799999999999999988888888888876554 11111 001111222446677788899999
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHhheecccc---------CCCC----CCCCCChhhHHHHHHHHHHHhhchhHH
Q 011037 224 AMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHGKT---------TNLD----PFLPYGTEGVFEAAAVVYWSYTGFDMV 290 (495)
Q Consensus 224 ~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~---------~~~~----~~~~~~~~~~~~~~~~~~~~f~G~e~~ 290 (495)
|++|+|..++++.+..+++++.++++.+..+...+. +++. ++.+.++ +++.++....|+|.|+|.+
T Consensus 158 n~~g~k~~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~g~-~~~~~~~~~~fsf~G~e~~ 236 (482)
T TIGR00907 158 NSLPTKWLPRITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVFTNFNNSTGGWKPGGF-AFLLGLLNPAWSMTGYDGT 236 (482)
T ss_pred HHhhHhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhheeeeCCCCCcCCCch-hhhhhhhhhHHHhcCcchh
Confidence 999999999999999888887766554443332111 1111 2223333 4667777788999999999
Q ss_pred HHhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcc-cccccc---ccHHHHHHHH-hCchHHHHHHHHHHHHHH
Q 011037 291 ATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVK-YTEIDM---NAAYSIAFRQ-IGMNWAKYLVSVCALKGM 365 (495)
Q Consensus 291 ~~~a~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~-~~~~~~---~~p~~~~~~~-~~~~~~~~~~~~~~~~s~ 365 (495)
++++||+|||+|++|||+..++.+..+++++..+......+ .++..+ ++|+.+++.. .|.++...++.+.++++.
T Consensus 237 ~~~a~E~knP~r~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~ 316 (482)
T TIGR00907 237 AHMAEEIENPEVVGPRAIIGAVAIGIVTGFCFNIVLFFSMGDIDSLISSTTGQPIAQIFYNALGNKAGAIFLLCLILVTS 316 (482)
T ss_pred hHHHHhcCChhhhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhcCCCCChHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 99999999999999999999998877766555554433332 232211 2588888775 466577778888888999
Q ss_pred HHHHHHHhhchhHHHHHHHhcCCCc--hhhhcccCc-cccchhHHHHHHHHHHHHHh
Q 011037 366 TTSLLVGSLGQARYTTQIARAHMIP--PWHNSILEF-KWKRMDWLCGNHCTLVFGDF 419 (495)
Q Consensus 366 ~~~~~~~~~~~sR~l~~~ardg~lP--~~~~~~~~~-~~p~~~~i~~~~~~~~~~~~ 419 (495)
+++.++.+++.||++++|||||.+| ++|+|+||| +.|.++++++.++..++.+.
T Consensus 317 ~~~~~~~~~~~sR~l~a~ardg~lP~~~~f~~v~~~~~~P~~ai~~~~~i~~~~~~~ 373 (482)
T TIGR00907 317 FFCAITCMTANSRMIYAFSRDGGLPFSPLWSRVNPRTQVPLNAVWLSAVWIILIGLL 373 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcCchHhhceeCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 999999999 55666777777666665444
No 31
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=100.00 E-value=2.1e-42 Score=354.05 Aligned_cols=325 Identities=23% Similarity=0.426 Sum_probs=276.0
Q ss_pred CCHhHHHHHHhhhhhhhhhhhccHHhHHhccChHHHHHHHHHHHHH-HHHHHHHhhhhhccccccchhHhHHHHhchhHH
Q 011037 79 LTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSA-LLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVA 157 (495)
Q Consensus 79 l~~~~~~~l~~~~~ig~g~~~~~~~~~~~~~G~~~~~~~li~~~~~-~~~~~~~ael~s~~P~~Gg~y~~~~~~~g~~~g 157 (495)
+|+++.+++.++.++|+|++..+ .... +|+..+++|++++++. ++.+++|+|+++++|++||.|.|+++.+||.+|
T Consensus 1 l~~~~~~~l~~~~~~g~gi~~~~--~~~~-~G~~~~~~~~i~~~~~~l~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g 77 (426)
T PF13520_consen 1 LGLFSAIALVIGSIIGSGIFFSP--AAAS-AGPSAILAWIIAALLFFLPIALSYAELSSAYPSAGGIYVWVSRAFGPFWG 77 (426)
T ss_dssp B-HHHHHHHHHHCHHTTTTTTHH--HHTC-TGCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSTTHHHHHHHHH-HHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH--HHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCeeeehhhhcccccch
Confidence 58999999999999999998876 4444 8888898999998888 899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhhHHHHHH
Q 011037 158 YIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWI 237 (495)
Q Consensus 158 ~~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~ 237 (495)
++.+|.+++.+....+.......+++...++ |+...+.....+++++++++.+.+|++|.|..+|++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~ 146 (426)
T PF13520_consen 78 FIVGWLYWVAYILSLASVASSFASYLLSLFG-----------PDLNPSPWPQFLIAIILILLFTLLNLLGIKLSGKIQNI 146 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT-----------GGGTCSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred hcccceeEEEeeccccccccchhhhhhhccc-----------cccccccchheeeeecccccceEeeechhhhhhhhhhh
Confidence 9999999999999998888888898887765 22222222355788889999999999999999999999
Q ss_pred HHHHHH-HHHHHHHHhheeccccCC-------CCCCCCCChhhHHHHHHHHHHHhhchhHHHHhhhhhcCCCCchhHHHH
Q 011037 238 SSIVSS-CVIVFVIIVGFVHGKTTN-------LDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLV 309 (495)
Q Consensus 238 ~~~~~l-~~~~~~~i~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~~p~ai~ 309 (495)
...+++ ..++++++.++...+.+. ...+.+.++.+++.++...+|+|.|+|.+++++||.|| |++||++.
T Consensus 147 ~~~~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~--k~ip~ai~ 224 (426)
T PF13520_consen 147 LTVIKIVIPLLVLIILGIVSFSFSGFNSLSFSLSTFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEENKN--KTIPRAII 224 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCCHHH----SHSCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS--HHHHHHHH
T ss_pred hhhhhhhhhhhhheeEEEeeecccccccccccccccCCccccchhhHHHHHHhhcccccccccccccccc--hhheeecc
Confidence 999999 566666666665433221 22455667778899999999999999999999999777 89999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccccc----cHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHh
Q 011037 310 GSMCMITAVYCLMALALTMMVKYTEIDMN----AAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIAR 385 (495)
Q Consensus 310 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~----~p~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~~~ar 385 (495)
.+.+++.++|++..++.....|+++...+ ++....++..++++...++.+..+++.+++.++.+.+.+|++++|||
T Consensus 225 ~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~ 304 (426)
T PF13520_consen 225 ISIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLASAVGGSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMAR 304 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHhhhhheeeecccchhhhcccccccccchhhccccccccccccccccccccccccchhhcchhhccccccc
Confidence 99999999999999999999998877543 25667788888789999999999999999999999999999999999
Q ss_pred cCCCchhhhcccCccccchhHHHHHHHHHHHHHh
Q 011037 386 AHMIPPWHNSILEFKWKRMDWLCGNHCTLVFGDF 419 (495)
Q Consensus 386 dg~lP~~~~~~~~~~~p~~~~i~~~~~~~~~~~~ 419 (495)
||.+|++|+|+||++.|.++.++..+++.++..+
T Consensus 305 d~~lP~~~~~~~k~~~P~~a~~~~~~i~~i~~~~ 338 (426)
T PF13520_consen 305 DGVLPKWFAKVNKFGTPYNAIILVAVISSILLLL 338 (426)
T ss_dssp TTSSSGGGGTTSSSSSCHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhccccCCceeeehhhhHHHHHHHHH
Confidence 9999999999997777777888777777555443
No 32
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=100.00 E-value=2.6e-40 Score=341.93 Aligned_cols=331 Identities=16% Similarity=0.229 Sum_probs=242.1
Q ss_pred ccCCHhHHHHHHhhhhhhhhhhhccHHhHHhccChHHHHHHHHHHHHH-HHHHHHHhhhhhccccccchhHhHHHHhchh
Q 011037 77 KCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSA-LLSAFCYTEFAVEIPVAGGSFSFLRVELGDF 155 (495)
Q Consensus 77 r~l~~~~~~~l~~~~~ig~g~~~~~~~~~~~~~G~~~~~~~li~~~~~-~~~~~~~ael~s~~P~~Gg~y~~~~~~~g~~ 155 (495)
|+++.++++++.+..+.+.... . .... .|++.++.|++++++. ++.+++++||++++|++||.|.|+++.+||.
T Consensus 1 ~~~~~~~l~~~~~~~v~~~~~~---~-~~a~-~G~~~~~~~~i~~~~~~ip~al~~aEL~~~~P~~GG~y~~~~~a~G~~ 75 (474)
T TIGR03813 1 KKLTVVTLAIMNITAVVSLRGL---P-AEAE-YGLSAAFYYLFAAIFFLVPVSLVAAELATAWPEKGGVFRWVGEAFGAR 75 (474)
T ss_pred CcccHHHHHHHHHHHHHHhhcc---h-HHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCceeeHhhhcChh
Confidence 4699999999998887653222 2 2234 7899999999999876 5799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhhHHHH
Q 011037 156 VAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLN 235 (495)
Q Consensus 156 ~g~~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~ 235 (495)
+||+.||.+|++++...+......+..+....+ .. .. .|..+.+......+.++++++.+++|++|+|..++++
T Consensus 76 ~gf~~gw~~w~~~~~~~p~~~~~~~~~~~~~~~-~~--~~---~~~~~~~~~~~~~~~l~~~~~~~~in~~gv~~~~~i~ 149 (474)
T TIGR03813 76 WGFLAIFMLWAQVTIWFPTVLTFGAVSLAFIGP-EA--TV---DESLAGNKLYVLVSVLFVYWLATFIALRGVAAFTKVA 149 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cc--cc---CcccccccHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 999999999999977655443333333332221 00 00 0112222212234566667788999999999999999
Q ss_pred HHHHHH-HHHHHHHHHHhheec---cccC----CCCCCCCC--ChhhHHHHHHHHHHHhhchhHHHHhhhhhcCCCCchh
Q 011037 236 WISSIV-SSCVIVFVIIVGFVH---GKTT----NLDPFLPY--GTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIP 305 (495)
Q Consensus 236 ~~~~~~-~l~~~~~~~i~~~~~---~~~~----~~~~~~~~--~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~~p 305 (495)
.+...+ +++.++++++.++.. ++.. ++.++.|+ ++.++..+. ..+|+|.|+|.++.++||+|||+|++|
T Consensus 150 ~~~~~~~~ii~~~~~ii~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~af~G~e~~~~~a~E~knP~r~iP 228 (474)
T TIGR03813 150 KWGGIVGTIIPAAILVILGISYLLTGGESQIPLRWDDAFPDFTNFDNVVLAA-SIFLFYAGMEMNAVHVKDVDNPDKNYP 228 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCHHHhCCCccccccHHHHH-HHHHHHhchhHhHHHHHhccCcccchh
Confidence 886544 344444444433321 1111 11122222 233333322 457899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccccccH----HHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhchhHHHH
Q 011037 306 IGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAA----YSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTT 381 (495)
Q Consensus 306 ~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~p----~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~ 381 (495)
|++..+..++.++|++.+++.....|+++...+++ +.+.++..|.++...++.+...++.+++.++.+.+.||+++
T Consensus 229 rAi~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~l~~~~~~~~~~sR~~~ 308 (474)
T TIGR03813 229 IAILIAALGTVLIFVLGTLAIAFIIPREDISLTQSLLVAFDNAFHWAGLSWLGPILAFALAIGVLAGVVTWVAGPSSGML 308 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCHhhccccccHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888888887654433 34455566777788888888888999999999999999999
Q ss_pred HHHhcCCCchhhhcccCccccchhHHHHHHHHHHHHHh
Q 011037 382 QIARAHMIPPWHNSILEFKWKRMDWLCGNHCTLVFGDF 419 (495)
Q Consensus 382 ~~ardg~lP~~~~~~~~~~~p~~~~i~~~~~~~~~~~~ 419 (495)
++||||.+||+|+|+||++.|.++++++.++..++.++
T Consensus 309 a~ardg~lP~~~~kv~k~~~P~~a~~~~~~~~~~l~~~ 346 (474)
T TIGR03813 309 AVAKAGYLPTFFQKTNKNGMPIHIMFVQGIAVSVLSVL 346 (474)
T ss_pred HHhhcCCCCHHHhccCCCCCcHHHHHHHHHHHHHHHHH
Confidence 99999999999999998878777887777665544433
No 33
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=4.8e-40 Score=340.89 Aligned_cols=333 Identities=28% Similarity=0.441 Sum_probs=284.3
Q ss_pred cCccccccCCHhH-HHHHHhhhhhhhhhhhccHHhHHhccChHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHhHH
Q 011037 71 SKQPLQKCLTWWD-LTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLR 149 (495)
Q Consensus 71 ~~~~l~r~l~~~~-~~~l~~~~~ig~g~~~~~~~~~~~~~G~~~~~~~li~~~~~~~~~~~~ael~s~~P~~Gg~y~~~~ 149 (495)
++++++|+++.++ ...+..+.++|.|++..++..... + +...++|++++++..+.+++++|+++++|++||.|.|++
T Consensus 6 ~~~~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~-~-~~~~~~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~ 83 (466)
T COG0531 6 MSSELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGL-A-PAAILAWLIAGIIILFLALSYAELSSAIPSAGGAYAYAK 83 (466)
T ss_pred cchhcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHh-c-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeehh
Confidence 3556789999999 888999999999999999988776 4 555555999999999999999999999999999999999
Q ss_pred HHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhh
Q 011037 150 VELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTR 229 (495)
Q Consensus 150 ~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~ 229 (495)
+.+||..|+.++|.+++++....+..+.....++...++. .+ . .........+++++++++.+++|++|+|
T Consensus 84 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~-------~~~~~~~~~~~~~~~~~~~~~ln~~G~~ 154 (466)
T COG0531 84 RALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPG-PG-L-------LSIGPLLIILIALALIALLTLLNLRGIK 154 (466)
T ss_pred hhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-ch-h-------hcCCchHHHHHHHHHHHHHHHHHHhhHH
Confidence 9999999999999999999999999999999988887761 10 0 0111023567889999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhheeccccCCCC--C-CC--CCChhhHHHHHHHHHHHhhchhHHHHhhhhhcCCCCch
Q 011037 230 RSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLD--P-FL--PYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDI 304 (495)
Q Consensus 230 ~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~--~-~~--~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~~ 304 (495)
..++++.+..+++++.++++++.++...+.++.. . +. ...+.+++.++...+|+|.|+|.+++++||+|||+|++
T Consensus 155 ~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r~i 234 (466)
T COG0531 155 ASAKINSIITILKIIILLIFIILGLFAFGFSNGNLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKRTI 234 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCccccc
Confidence 9999999999999999999988877766554322 1 11 12345688889999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccccccccc---cHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhchhHHHH
Q 011037 305 PIGLVGSMCMITAVYCLMALALTMMVKYTEIDMN---AAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTT 381 (495)
Q Consensus 305 p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~---~p~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~ 381 (495)
||+++.+.+.+.++|++..+......|.+++... .|..++++..++.+...++.+..+++.+++.++...+.+|.++
T Consensus 235 p~aii~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~~~ 314 (466)
T COG0531 235 PRAIILSLLIVLILYILGALVIVGVLPAGDLAASAPSAPLALAALFGGGNWGAIIIAILALLSLFGSLLAWILAVSRVLY 314 (466)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCccHHHHhccCCCccHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988887655543 6888888887778889999999999999999999999999999
Q ss_pred HHHhcCCCchhhhcccCcccc-chhHHHHHHHHH
Q 011037 382 QIARAHMIPPWHNSILEFKWK-RMDWLCGNHCTL 414 (495)
Q Consensus 382 ~~ardg~lP~~~~~~~~~~~p-~~~~i~~~~~~~ 414 (495)
+|||||.+|++|+|+|+++++ .++.++..++..
T Consensus 315 ~~ardg~lP~~~~~~~~~~~~P~~a~~~~~ii~~ 348 (466)
T COG0531 315 AMARDGLLPKFFAKVNPKGRTPVIALILTGIISL 348 (466)
T ss_pred HHHhCCCccHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 999999999999999999855 457666666665
No 34
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=100.00 E-value=1.6e-39 Score=336.70 Aligned_cols=329 Identities=15% Similarity=0.196 Sum_probs=240.0
Q ss_pred cccCCHhHHHHHHhhhhhhhhhhhccHHhHHhccChHHHHHHHHHHHH-HHHHHHHHhhhhhccc-cccchhHhHHHHhc
Q 011037 76 QKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLS-ALLSAFCYTEFAVEIP-VAGGSFSFLRVELG 153 (495)
Q Consensus 76 ~r~l~~~~~~~l~~~~~ig~g~~~~~~~~~~~~~G~~~~~~~li~~~~-~~~~~~~~ael~s~~P-~~Gg~y~~~~~~~g 153 (495)
+|+++.++++++.++.+.+ +...+ . ... .|.+.+..|++++++ .++.+++++||++++| ++||.|.|+++++|
T Consensus 3 ~~~l~~~~~~~~~~~~v~~--~~~~~-~-~a~-~G~~~i~~~i~~~l~~~lp~al~~AELas~~p~~~GG~y~wv~~a~G 77 (507)
T TIGR00910 3 AKKLSLFGFFAITASMVLA--VYEYP-T-FAT-SGFHLVFFLLLGGILWFIPVALCAAEMATVDGWEEGGIFAWVSNTLG 77 (507)
T ss_pred CcEeeHHHHHHHHHHHHHH--HHhhH-H-HHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeeeehhhccC
Confidence 5779999999999988864 33222 2 223 788877778887776 6779999999999998 99999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhhHH
Q 011037 154 DFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSW 233 (495)
Q Consensus 154 ~~~g~~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~ 233 (495)
|++||.++|.+|+......+.........+..... . |..+.+.....+..++++++++++|++|.|..++
T Consensus 78 ~~~Gf~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~-~---------~~~~~~~~~~~i~~l~i~~~~t~~n~~G~k~~~~ 147 (507)
T TIGR00910 78 ERFGFAAIFFGWFQIAIGFIPMIYFILGALSYILK-F---------PALNEDPIIKFIAALIIFWALAFSQFGGTKRTAK 147 (507)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C---------chhccCcHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 99999999999998876544433222222222222 0 1122222223445566788899999999999999
Q ss_pred HHHHHHHHHHHH-HHHHHHhheec---cccC----CCCCCCCCC-hhhHHHHHHHHHHHhhchhHHHHhhhhhcCCCCch
Q 011037 234 LNWISSIVSSCV-IVFVIIVGFVH---GKTT----NLDPFLPYG-TEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDI 304 (495)
Q Consensus 234 ~~~~~~~~~l~~-~~~~~i~~~~~---~~~~----~~~~~~~~~-~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~~ 304 (495)
++.+.....++. ++++++.++.. +++. +..++.|+. ..+.+..+...+|+|.|+|.+++++||+|||+|++
T Consensus 148 i~~i~~~~~~~i~~~ili~l~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~faf~G~E~~a~~a~E~knP~r~~ 227 (507)
T TIGR00910 148 IAKAGFFAGILIPAFILFALAAAYFHGGAPIAIEIDSHAFFPDFSKVGTLVVFVAFIGAYMGVEASASHINELENPGRDY 227 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCcHHhcCCCcccccHHHHHHHHHHHHhcHHHHHHHHHHccCCcccc
Confidence 998865544433 33333322221 1111 112233321 12344455556899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccccccccccHHH----HHHHHhC--chHHHHHHHHHHHHHHHHHHHHHhhchhH
Q 011037 305 PIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYS----IAFRQIG--MNWAKYLVSVCALKGMTTSLLVGSLGQAR 378 (495)
Q Consensus 305 p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~----~~~~~~~--~~~~~~~~~~~~~~s~~~~~~~~~~~~sR 378 (495)
|||++.+.+++.++|.+..+++....|+++...+++.. +.+...+ .++...++.+.++++.+++.++++++.||
T Consensus 228 PrAi~~~~i~~~~l~~l~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~l~~~~~~i~~~sR 307 (507)
T TIGR00910 228 PLAMILLMIAAICLDAIGGFSIAAVIPGKEINLSAGVIQTFQTLILHFAHEIEWLVKVIAALIAFGVLAEIASWIVGPSR 307 (507)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHheecChhhcccchHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888887778888775443333 3333343 25677788888899999999999999999
Q ss_pred HHHHHHhcCCCchhhhcccCccccchhHHHHHHHHHHHHHh
Q 011037 379 YTTQIARAHMIPPWHNSILEFKWKRMDWLCGNHCTLVFGDF 419 (495)
Q Consensus 379 ~l~~~ardg~lP~~~~~~~~~~~p~~~~i~~~~~~~~~~~~ 419 (495)
+++++||||.+|++|+|+||++.|.++++++.++..++.++
T Consensus 308 ~l~~~ardg~lP~~~~k~nk~~~P~~a~~~~~~i~~l~~~~ 348 (507)
T TIGR00910 308 GMFAAAQKGLLPAAFAKMNKHEVPVPLVIIQGIITSIAGAI 348 (507)
T ss_pred HHHHhcccCCcCHHHHhhCcCCCcHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998888888888887777665544
No 35
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=100.00 E-value=5.8e-42 Score=355.04 Aligned_cols=323 Identities=24% Similarity=0.387 Sum_probs=269.8
Q ss_pred HHHHHhhhhhhhhhhhccHHhHHhccCh-HHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHhHHHHhchhHHHHHHH
Q 011037 84 LTWLCFGSVVGSGIFVITGQEAKKHAGP-AIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAG 162 (495)
Q Consensus 84 ~~~l~~~~~ig~g~~~~~~~~~~~~~G~-~~~~~~li~~~~~~~~~~~~ael~s~~P~~Gg~y~~~~~~~g~~~g~~~g~ 162 (495)
+.++++++++|+|.|...+..+.. +|| +.++++++++++.++++.+++|+++++|++||.|.|++|.+||.+|+.+||
T Consensus 2 v~~~~ig~~ig~g~f~~~g~~~~~-~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~~Gg~y~y~~~~lg~~~Gf~~gw 80 (478)
T PF00324_consen 2 VFMISIGGIIGTGLFLGSGFAIAA-AGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPSAGGFYAYASRGLGPALGFAAGW 80 (478)
T ss_pred EEEeeHHHHHHHHHHHHHHHHHHh-cccccchhHhHHHHHHHHhhhhhhhhhhhhhccccchhhhhhhccCCcCCceeeH
Confidence 345788999999999999999988 888 589999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q 011037 163 NILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVS 242 (495)
Q Consensus 163 ~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~ 242 (495)
.||+.++...+.+....+.++..+.. .++.+..+....++..+++++++.+|++|+|..++++.++..++
T Consensus 81 ~y~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~i~~~~~~~l~~~gv~~~~~~~~~~~~i~ 150 (478)
T PF00324_consen 81 AYWLSYIAAIAAEATAAGSFLQFWGY----------FPGLPSTWVWGILIAIIFILLITLLNLFGVRVSGKIEFILTIIK 150 (478)
T ss_pred HHHHHHHHHHHhhhhhhhhhhccccc----------cccccccccccchhhhhhhhhhhhhhhhhhhccchHHHHHHHHh
Confidence 99999999999988888777766511 01222111111145778888999999999999999999999999
Q ss_pred HHHHHHHHHhh-ee-cc--ccCCC---------CCCCCCC--------hhhHHHHHHHHHHHhhchhHHHHhhhhhcCCC
Q 011037 243 SCVIVFVIIVG-FV-HG--KTTNL---------DPFLPYG--------TEGVFEAAAVVYWSYTGFDMVATMAEETKKPS 301 (495)
Q Consensus 243 l~~~~~~~i~~-~~-~~--~~~~~---------~~~~~~~--------~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~ 301 (495)
++.++.+++.+ +. .. +..+. .+..+++ +.+++.++..++++|.|+|.++.++||+|||+
T Consensus 151 ~~~li~~ii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~ 230 (478)
T PF00324_consen 151 LIALIAFIIVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKNPR 230 (478)
T ss_pred hhHhhhhhhhcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCCCch
Confidence 99988888777 22 11 11111 1123333 78899999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhccccccccc------cHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhc
Q 011037 302 RDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMN------AAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLG 375 (495)
Q Consensus 302 k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~------~p~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 375 (495)
|++|||+..++++++++|++..++.....|+++.... +|+..+.+..+.+++..+++++.+.+.+++.++.+++
T Consensus 231 k~IPra~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~i~~~~~l~s~~s~~~~~~~~ 310 (478)
T PF00324_consen 231 KTIPRATLLSVLRIGVFYVLTSYALTLAVPYDNLGLTAASNSASPFVIAAQYSGGPWLAWIVNAGILISAFSSANASLYA 310 (478)
T ss_pred hhhhhHhhhhhhhhhhhhhhhhhhcccccCccchhhccccccccchhhhhhhcccccccceecccchhhhhhhhhhhhcc
Confidence 9999999999999999999999999988888875322 4889999999999999999999999999999999999
Q ss_pred hhHHHHHHHhcCCCc-hhhhcccCccccchhHHHHHHHHHHHH
Q 011037 376 QARYTTQIARAHMIP-PWHNSILEFKWKRMDWLCGNHCTLVFG 417 (495)
Q Consensus 376 ~sR~l~~~ardg~lP-~~~~~~~~~~~p~~~~i~~~~~~~~~~ 417 (495)
+||++++|||||.+| +++++.+|++.|.++++++.++..+..
T Consensus 311 ~sR~l~ama~dg~lP~~~~~~~~k~~~P~~Ai~~~~~i~~~~~ 353 (478)
T PF00324_consen 311 ASRLLYAMARDGLLPKKFFARHPKNGVPYVAILVSSIISLLVL 353 (478)
T ss_pred cceeehhhhhhhhhhhhhhhhhhcCCceEEEEeeehhchheee
Confidence 999999999999999 555555556666667777766665544
No 36
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=100.00 E-value=1.4e-37 Score=323.01 Aligned_cols=335 Identities=15% Similarity=0.224 Sum_probs=237.1
Q ss_pred ccccCCHhHHHHHHhhhhhhhhhhhccHHhHHhccChHHHHHHHHHHHH-HHHHHHHHhhhhhcccc-ccchhHhHHHHh
Q 011037 75 LQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLS-ALLSAFCYTEFAVEIPV-AGGSFSFLRVEL 152 (495)
Q Consensus 75 l~r~l~~~~~~~l~~~~~ig~g~~~~~~~~~~~~~G~~~~~~~li~~~~-~~~~~~~~ael~s~~P~-~Gg~y~~~~~~~ 152 (495)
++|+++++++..++++.++|.+. .+..... +|++.++.+++++++ .++.+++++|+++++|+ +||.|.|+++.+
T Consensus 5 ~~~~l~~~~l~~~~~~~vig~~~---~~~~~~~-~G~~~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aGG~Y~w~~~~~ 80 (496)
T PRK15238 5 TKKKLSLIGLILMIFTSVFGFAN---SPRAFYL-MGYSAIPWYILSAILFFIPFALMMAEYGSAFKDEKGGIYSWMNKSV 80 (496)
T ss_pred ccCeeeHHHHHHHHHHHHHhCCc---hHHHHHH-cChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHc
Confidence 47889999999999999998653 2333444 888866777766655 67899999999999997 899999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhh
Q 011037 153 GDFVAYIAAGNILLEAVVGAAGLARSWSS-YLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRS 231 (495)
Q Consensus 153 g~~~g~~~g~~~~l~~~~~~a~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~ 231 (495)
||++||+++|.+|.++............. .....+.......|+.. +.. .+....+++++++++++++|.+|+|..
T Consensus 81 G~~~gf~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~a~~~~~~~t~vn~~g~~~~ 157 (496)
T PRK15238 81 GPKFAFIGTFMWFASYIIWMVSTASKIWIPFSTFIFGKDTTQTWHFL--GLN-STQVVGILAVIWMILVTFVASKGINKI 157 (496)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhhhhh--ccc-chHHHHHHHHHHHHHHHHHHccchHHH
Confidence 99999999999888887665433322111 11111120111111100 111 111122456666668999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH----Hhheecc-ccCC---CCCCC---CCC---hhhHHHHHHHHHHHhhchhHHHHhhhhh
Q 011037 232 SWLNWISSIVSSCVIVFVI----IVGFVHG-KTTN---LDPFL---PYG---TEGVFEAAAVVYWSYTGFDMVATMAEET 297 (495)
Q Consensus 232 ~~~~~~~~~~~l~~~~~~~----i~~~~~~-~~~~---~~~~~---~~~---~~~~~~~~~~~~~~f~G~e~~~~~a~E~ 297 (495)
++++++.+.+++...++++ +..+... +.++ ..++. ..+ ..+++.++....|+|.|+|..++++||+
T Consensus 158 ~~i~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~ 237 (496)
T PRK15238 158 AKVTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAVGGLVDKT 237 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHHHHHHHhc
Confidence 9999988776654322111 1111111 1111 01111 111 1457778888999999999999999999
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcccccccc-------ccHHHHHHHHhC-----------------chHH
Q 011037 298 KKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDM-------NAAYSIAFRQIG-----------------MNWA 353 (495)
Q Consensus 298 k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~-------~~p~~~~~~~~~-----------------~~~~ 353 (495)
|||+|++||++..+..++.++|++..+......|+++... +.|+. +.+..+ +.++
T Consensus 238 ~~p~~~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~g~~~~~~~~~g~~~ 316 (496)
T PRK15238 238 ENPEKNFPKGIIIAAIVISIGYSLAIFLWGVSTNWQQVLSNKSVNLGNITYV-LMNNLGYTLGHALGLSPAASLTLGVWF 316 (496)
T ss_pred cCCCccccHHHHHHHHHHHHHHHHHHHHHHhcCchhhcCCccccchhccHHH-HHHHHHHHHHHHhccchhhhhhhhHHH
Confidence 9999999999999999999999999888877777766532 12332 122211 2345
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhHHHHHHHhcCCCchhhhcccCccccchhHHHHHHHHHHHH
Q 011037 354 KYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPPWHNSILEFKWKRMDWLCGNHCTLVFG 417 (495)
Q Consensus 354 ~~~~~~~~~~s~~~~~~~~~~~~sR~l~~~ardg~lP~~~~~~~~~~~p~~~~i~~~~~~~~~~ 417 (495)
..++++..+++.+++.++..++.+|.+++++|||.+||+|+|+||++.|.++++++.++..++.
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~g~~P~~f~k~nk~g~P~~a~~~~~~i~~l~~ 380 (496)
T PRK15238 317 ARITGLSMFLAYTGAFFTLSYSPLKQLIEGTPKALWPKKMTKLNKNGMPANAMWLQCIIVSVFI 380 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCccCcccHHHHhhCcCCCcHHHHHHHHHHHHHHH
Confidence 5577788899999999999999999999999999999999999988888888888776665543
No 37
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.96 E-value=7.7e-27 Score=235.17 Aligned_cols=311 Identities=14% Similarity=0.075 Sum_probs=244.0
Q ss_pred HHHhhhhhhhhhhhccHHhHHhccChHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHhHHHHhchhHHHHHHHHHH
Q 011037 86 WLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNIL 165 (495)
Q Consensus 86 ~l~~~~~ig~g~~~~~~~~~~~~~G~~~~~~~li~~~~~~~~~~~~ael~s~~P~~Gg~y~~~~~~~g~~~g~~~g~~~~ 165 (495)
.+.+++++|+|++..+...... +++.+++..+++++++...+++++|+++++|++||.|.|.++.+||+.|++.+|.++
T Consensus 4 ~lv~gt~IGaGIl~lP~~~a~~-g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~~~~~~~~~~~~~G~~~g~~~~~~~~ 82 (381)
T TIGR00837 4 LIIAGTTIGAGMLALPTSTAGA-WFIWTLLLLILLWFLMLHSGLLLLEVYLTYPGGASFNTIAKDLLGKTGNIIAGLSLL 82 (381)
T ss_pred EEeehhhHhHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCHHHHHHHHHHHH
Confidence 4567889999999999987654 556677778999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Q 011037 166 LEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCV 245 (495)
Q Consensus 166 l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~l~~ 245 (495)
+......+.+....++++...++..... ..+ ..+..+++.+++..++++|.|..+|++.++...++..
T Consensus 83 ~~~~~~~~ay~~~~~~~l~~~~~~~~~~-------~~~-----~~~~~~~~~~v~~~l~~~G~~~~~~v~~i~~~~~l~~ 150 (381)
T TIGR00837 83 FVLYILTYAYISGGGSILSRLIGEYFGF-------PWS-----ARAIVLIFTVLFGSFVWLSTSAVDRITRVLIFGKIIA 150 (381)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHhcCC-------Ccc-----HHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHH
Confidence 9888888888777778877766511110 111 3356677788888999999999999999999999998
Q ss_pred HHHHHHhheeccccCCCCCCC--CCChhhHHHHHHHHHHHhhchh-HHHHhhhhhcCCCCchhHHHHHHHHHHHHHHHHH
Q 011037 246 IVFVIIVGFVHGKTTNLDPFL--PYGTEGVFEAAAVVYWSYTGFD-MVATMAEETKKPSRDIPIGLVGSMCMITAVYCLM 322 (495)
Q Consensus 246 ~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~f~G~e-~~~~~a~E~k~p~k~~p~ai~~~~~~~~~~y~~~ 322 (495)
++++++.++.+.+.+|+.+.. +.++.++..++...+++| |+| ..+.+.+|.|+++|++||++..+..++.++|++.
T Consensus 151 l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~f-g~~~~i~~~~~~~~~~~k~i~raii~g~~i~~~lY~l~ 229 (381)
T TIGR00837 151 FALVFSGLLPHVKGDLLLDVALDTSYWPYILSALPVCLTSF-GFHGNVPSLYKYYDGNVKKVKKSILIGSAIALVLYILW 229 (381)
T ss_pred HHHHHHHHHhhccHHHHhcCccccccHHHHHHHHHHHHHHH-HcccccHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888777776666654421 235677888888888888 564 6888899998779999999999999999999999
Q ss_pred HHHHHHhcccccccc-------ccHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHhcCCCchhhh
Q 011037 323 ALALTMMVKYTEIDM-------NAAYSIAFRQ-IGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPPWHN 394 (495)
Q Consensus 323 ~~~~~~~~~~~~~~~-------~~p~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~~~ardg~lP~~~~ 394 (495)
........|.+++.+ .+++.++++. .+.++...++.+..++++.++.++...+.++. +++.++
T Consensus 230 ~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~---------l~~~~~ 300 (381)
T TIGR00837 230 QLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDY---------LADLFK 300 (381)
T ss_pred HHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHhC
Confidence 999999999888742 1456666665 57777888999999999999999988777744 444455
Q ss_pred cccCccccchhHHHHHHHHHHHHHh
Q 011037 395 SILEFKWKRMDWLCGNHCTLVFGDF 419 (495)
Q Consensus 395 ~~~~~~~p~~~~i~~~~~~~~~~~~ 419 (495)
+.+++.++....+++.+..++++..
T Consensus 301 ~~~~~~~~~~~~~~~~~~pl~~a~~ 325 (381)
T TIGR00837 301 FDDSKKGRFKTGLLTFLPPLVFALF 325 (381)
T ss_pred CCcccCCCchhhhhhHHhHHHHHHH
Confidence 5444444555555555555555433
No 38
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.93 E-value=1.3e-22 Score=202.68 Aligned_cols=286 Identities=15% Similarity=0.159 Sum_probs=236.3
Q ss_pred ccCCHhHHHHHHhhhhhhhhhhhccHHhHHhccChHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHhHHHHhchhH
Q 011037 77 KCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFV 156 (495)
Q Consensus 77 r~l~~~~~~~l~~~~~ig~g~~~~~~~~~~~~~G~~~~~~~li~~~~~~~~~~~~ael~s~~P~~Gg~y~~~~~~~g~~~ 156 (495)
+++|.+|..++.++.++|+|++..++..... +|+.+|++++++++..++.+++++|+++++|+. +.++|.++.+||+.
T Consensus 1 ~~is~~q~~~l~~~~~iG~gil~~P~~~~~~-a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~~-~~~~~~~~~~Gk~~ 78 (359)
T TIGR00912 1 DKISSKQLIFLISSTMIGSGLLTLPALVSQS-AGQDGWISIILGGLIIIFLLCLMIKIMSKFPEK-NFSEILSKYLGKIL 78 (359)
T ss_pred CcCcHHHHHHHHHHHHHHHHHHhhhHHHHhc-cCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHhhHHH
Confidence 3689999999999999999999999988776 888999999999999999999999999999987 69999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 011037 157 AYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNW 236 (495)
Q Consensus 157 g~~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~ 236 (495)
|++.+|.+++......+......++++..... |+.| ..++.+++++++...+..|+|..+|++.
T Consensus 79 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-----------~~tp-----~~~~~l~~l~~~~~~~~~Gi~~i~r~~~ 142 (359)
T TIGR00912 79 GRLLSILFILYFFLIAAYLIRIFADFIKTYLL-----------PRTP-----IIVIIILIIIVSIYIVRKGIEVLLRTAE 142 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------CCCC-----HHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 99999999988888887888888888876544 2222 3466777888888999999999999999
Q ss_pred HHHHHHHHH-HHHHHHhheeccccCCCCCCCCCChhhHHHHHH-HHHHHhhchhHHHHhhhhhcCCCCchhHHHHHHHHH
Q 011037 237 ISSIVSSCV-IVFVIIVGFVHGKTTNLDPFLPYGTEGVFEAAA-VVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCM 314 (495)
Q Consensus 237 ~~~~~~l~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~f~G~e~~~~~a~E~k~p~k~~p~ai~~~~~~ 314 (495)
++..+.+.. ++++........+.+|..|..++|+..++.+.. ...++|.|+|......+|+||| |+.||++..+..+
T Consensus 143 i~~~~~i~~~~~il~~~~~~~~~~~~l~P~~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~-~~~~k~~~~~~~~ 221 (359)
T TIGR00912 143 ILLIIFLILFILVLILLAPKLGNIKNLLPVLENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKK-KKIKKSIIKAIII 221 (359)
T ss_pred HHHHHHHHHHHHHHHHHhcccccHHHccCccccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCCh-hhhHHHHHHHHHH
Confidence 999888776 344444444455678888888889888888887 8889999999999999999997 5699999999999
Q ss_pred HHHHHHHHHHHHHHhccccccccc-cHHHHHHHHhCch-HHH---HHHHHHHHHHHHHHHHHHhhchhHHHH
Q 011037 315 ITAVYCLMALALTMMVKYTEIDMN-AAYSIAFRQIGMN-WAK---YLVSVCALKGMTTSLLVGSLGQARYTT 381 (495)
Q Consensus 315 ~~~~y~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~-~~~---~~~~~~~~~s~~~~~~~~~~~~sR~l~ 381 (495)
++++|++.........+.++.... .|..+..+....+ ... .++....+.+.+.....+++..++.+.
T Consensus 222 ~~~ly~~~~~~~i~~lg~~~~~~~~~P~~~~~~~i~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~~ 293 (359)
T TIGR00912 222 GVLLYILTTFVSISVFGGNVTKNLYWPTLELIKLINIGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLS 293 (359)
T ss_pred HHHHHHHHHHHHHheecHHHhhhhcccHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998888888877654 6888888866433 332 344455556666666677777777643
No 39
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=99.91 E-value=6.4e-24 Score=212.28 Aligned_cols=335 Identities=15% Similarity=0.130 Sum_probs=258.3
Q ss_pred ccccCCHhHHHHH-HhhhhhhhhhhhccHHhHHhccChH-HHHHHHHHHHHHHHHHHHHhhhhhccc-cccchhHhHHHH
Q 011037 75 LQKCLTWWDLTWL-CFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIP-VAGGSFSFLRVE 151 (495)
Q Consensus 75 l~r~l~~~~~~~l-~~~~~ig~g~~~~~~~~~~~~~G~~-~~~~~li~~~~~~~~~~~~ael~s~~P-~~Gg~y~~~~~~ 151 (495)
.+-+++....+.+ ++-++.|+-.|.....+.+. +|.. .++..++++++.++++.+++..+++-- .+||.|..++|.
T Consensus 110 ~a~~mGt~mGVyLPclQnIlGVilFiRLtWvVG~-AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpaGGsYfmISRs 188 (1075)
T KOG2082|consen 110 KAARMGTLMGVYLPCLQNILGVILFIRLTWVVGM-AGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPAGGSYFMISRS 188 (1075)
T ss_pred CccccceeeeeeHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCeeEEEecc
Confidence 4455776665555 56777899999999999888 8987 888889999999999999999999988 789999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcc---CCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhh
Q 011037 152 LGDFVAYIAAGNILLEAVVGAAGLARSWSSYLAS-MIDS---NNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSG 227 (495)
Q Consensus 152 ~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~l~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 227 (495)
+||.+|..+|.+++++..+..+.+..+..+.+.. +++. ....+.. .+....++...+.+.+++++.+++...|
T Consensus 189 LGPEFGgAVGlcFYLgtT~AaaMYIlGaVEi~L~Yi~P~aaIf~~~~a~---~~~~am~nnlRvYGT~~Li~m~lIVf~G 265 (1075)
T KOG2082|consen 189 LGPEFGGAVGLCFYLGTTVAAAMYILGAVEIFLTYIFPAAAIFGAEDAH---DEAAAMLNNLRVYGTVFLILMALIVFVG 265 (1075)
T ss_pred cCccccceeeehhhhhhHHHHHHHHHhHHHHHHHHHccHhhhcCccccc---cchhhhhcceehHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998877765 3331 1111111 1123334557789999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhheecc------------------------------ccCC----------------
Q 011037 228 TRRSSWLNWISSIVSSCVIVFVIIVGFVHG------------------------------KTTN---------------- 261 (495)
Q Consensus 228 ~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~------------------------------~~~~---------------- 261 (495)
+|.+.++..++..+.++.++.+.+.++-.. +..|
T Consensus 266 VK~Vnk~A~vfL~CVILSIlaiyaG~i~~~~~~~~~~vC~lgnr~L~~~~~d~c~k~~~~~~~~~~~~L~~~fC~~~~~~ 345 (1075)
T KOG2082|consen 266 VKFVNKFAPVFLACVILSILAIYAGGIKSIFDPPGFPVCMLGNRLLSSSIFDNCSKTETVDNDNVTSFLWGLFCNSNNDS 345 (1075)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhhhhccCCCCCeeEEecceeccccccccchhhhccccccHHHHHHHhhCCCCCCC
Confidence 999999999999999998888777654210 0011
Q ss_pred -----------CC---CC----------------------CCCC-------------------hhhHHHHHHHHHHHhhc
Q 011037 262 -----------LD---PF----------------------LPYG-------------------TEGVFEAAAVVYWSYTG 286 (495)
Q Consensus 262 -----------~~---~~----------------------~~~~-------------------~~~~~~~~~~~~~~f~G 286 (495)
.. ++ .+.| -..|..-+.+.+.+.+|
T Consensus 346 ~~c~~y~~~nnvt~i~GipG~a~g~~~eNlws~Ylekg~~v~~g~~~~~~~~~~~~~~V~~Di~tSFtlLvgIfFPsVTG 425 (1075)
T KOG2082|consen 346 ATCDEYFSKNNVTEIQGIPGLASGVFKENLWSAYLEKGEIVEYGVPSADIADSSGHPYVVQDITTSFTLLVGIFFPSVTG 425 (1075)
T ss_pred cccccccccccceeecCCcchhhhhhhhhhhHhhhcccccccCCCCCCCcccccCCCceeecchhhHHHHHHhhccccce
Confidence 00 00 0000 01244445566778999
Q ss_pred hhHHHHhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccccccccHHHHHHH------HhCchHHHHHHHHH
Q 011037 287 FDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFR------QIGMNWAKYLVSVC 360 (495)
Q Consensus 287 ~e~~~~~a~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~~~~------~~~~~~~~~~~~~~ 360 (495)
+-+.++.+++.|||+|++|.+.+.+++.+..+|+...+.+.......-+.. -+.+..+ .+. -.-.+++.++
T Consensus 426 ImaGSNrSGDLkDaQkSIPvGTI~AilTTS~vYlssv~lFGa~i~~~vLRD--KfG~sv~g~lVva~la-WPsPwVi~IG 502 (1075)
T KOG2082|consen 426 IMAGSNRSGDLKDAQKSIPVGTIAAILTTSFVYLSSVVLFGACIEGVVLRD--KFGQSVGGNLVVATLA-WPSPWVIVIG 502 (1075)
T ss_pred eeecCCCCccccchhhcCchhhhHHHHHHHHHHHHHHHHHHHhhcchhhhh--hhhhhccCcEEEEEec-CCCceeeehh
Confidence 999999999999999999999999999999999999988887766322210 1111111 011 1234788899
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHhcCCCc--hhhhcccCccccchhHHHHHHHHHHH
Q 011037 361 ALKGMTTSLLVGSLGQARYTTQIARAHMIP--PWHNSILEFKWKRMDWLCGNHCTLVF 416 (495)
Q Consensus 361 ~~~s~~~~~~~~~~~~sR~l~~~ardg~lP--~~~~~~~~~~~p~~~~i~~~~~~~~~ 416 (495)
.++|.+++.+.++.+++|+++++|||+++| +.|+|.++++.|.++++++.+++-.-
T Consensus 503 sFlST~GAgLQsLtgAPRLLQAIAkD~IiPfL~~F~~~~~ngEPt~aLlLT~~Ice~g 560 (1075)
T KOG2082|consen 503 SFLSTCGAGLQSLTGAPRLLQAIAKDDIIPFLAPFGHGKANGEPTWALLLTAIICECG 560 (1075)
T ss_pred HHHHHhHHHHhhhcCcHHHHHHHhhcCccchhhhhccccCCCCccHHHHHHHHHHHhh
Confidence 999999999999999999999999999999 99999999999999999888776553
No 40
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.91 E-value=1.8e-23 Score=207.61 Aligned_cols=326 Identities=16% Similarity=0.145 Sum_probs=252.4
Q ss_pred ccc-cCCHhHHHHHHhh-hhhhhhhhhccHHhHHhccChH-HHHHHHHHHHHHHHHHHHHhhhhhccc-cccchhHhHHH
Q 011037 75 LQK-CLTWWDLTWLCFG-SVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIP-VAGGSFSFLRV 150 (495)
Q Consensus 75 l~r-~l~~~~~~~l~~~-~~ig~g~~~~~~~~~~~~~G~~-~~~~~li~~~~~~~~~~~~ael~s~~P-~~Gg~y~~~~~ 150 (495)
..| +|++++.++.-.. +|...-+|...|.++++ +|.- .++-++++..+.+++.+++..++++-- +.||.|..++|
T Consensus 62 s~r~kLgTf~GvfvPtaLsmfSiLlFLR~gfIvG~-aGll~Tll~lliaY~I~llTvlSicAIsTNGaV~GGGaYymISR 140 (945)
T KOG1288|consen 62 SNRAKLGTFEGVFVPTALSMFSILLFLRFGFIVGQ-AGLLKTLLMLLIAYAILLLTVLSICAISTNGAVRGGGAYYMISR 140 (945)
T ss_pred CCcccccceeeEechhHHHHHHHHHHHHHhhhhcc-hHHHHHHHHHHHHHHHHHHHHHHHhhhccCCceecCceEEEEEc
Confidence 344 8998888766443 44556678899999888 8886 888889999999999999999999998 78899999999
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhh
Q 011037 151 ELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRR 230 (495)
Q Consensus 151 ~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~ 230 (495)
.+||.+|.-.|..++++.++.++.+..++.+-+.+.++ ....... ....+|..+++..+.+.++..++..+++.|...
T Consensus 141 sLGpEfGGSIGllFf~anV~~~am~isG~vE~il~nfG-~~a~g~s-g~~~lP~g~ww~fly~t~vl~l~~~vc~lGsal 218 (945)
T KOG1288|consen 141 SLGPEFGGSIGLLFFVANVFNCAMNISGFVEPILDNFG-KEAQGAS-GSQFLPDGYWWRFLYTTLVLALCLIVCLLGSAL 218 (945)
T ss_pred ccCcccCCeeeehhhHHHHhcchhhhhhhhHHHHHhcC-ccccCCc-ccccCCCCcchhhHHHHHHHHHHHHHHHhhHHH
Confidence 99999999999999999999999999999999888877 2221100 012357778888889999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhheeccccCCCC------------------CCC-----------------CCChhhHHH
Q 011037 231 SSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLD------------------PFL-----------------PYGTEGVFE 275 (495)
Q Consensus 231 ~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~------------------~~~-----------------~~~~~~~~~ 275 (495)
.+|..++..++..+.+..+.+..++.+.+.+.. ++. ..+...|..
T Consensus 219 fAkas~i~f~~is~s~~si~iS~ifvgp~~~~ip~~~~p~~sn~t~~~~yTG~~~sTl~dNL~~~yt~dyt~~~~~~F~~ 298 (945)
T KOG1288|consen 219 FAKASNILFVVISVSLFSIPISFIFVGPFKDPIPVPGDPILSNTTLFVHYTGLSWSTLMDNLGSHYTEDYTGGGYEDFAS 298 (945)
T ss_pred HHhhhhhhhhHHHHHHhhhhheeEEeccccCCCCCCCCccccCcceeeeecCccHHHHhhhhhhhhcccccCCCceehhh
Confidence 999999988877777776666655543322221 110 012234666
Q ss_pred HHHHHHHHhhchhHHHHhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccccccccHHHHHHHHhCchHHHH
Q 011037 276 AAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKY 355 (495)
Q Consensus 276 ~~~~~~~~f~G~e~~~~~a~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 355 (495)
.+...+-.-+|.-+.++|++|.|+|.|++||+.+.++..+.+.|++..+...+..|+..+.++-.+ +..+. .-..
T Consensus 299 ~FgV~F~g~tGimAGAnMSgELk~PSkSIP~GTl~ava~Tf~~Yvl~~flm~~t~~r~~Lq~dy~v---~~~is--l~p~ 373 (945)
T KOG1288|consen 299 TFGVFFPGTTGIMAGANMSGELKAPSKSIPKGTLSAVAFTFFVYVLVIFLMGCTVPRTLLQNDYDV---MMHIS--LHPP 373 (945)
T ss_pred hheeeeccchhhhcCCCcCccccCccccCCccchHHHHHHHHHHHHHHHHhccCcchHHhhhchhh---eeecc--ccch
Confidence 666777788999999999999999999999999999999999999999999988888766554221 12221 1235
Q ss_pred HHHHHHHHHHHHHHHHHhhchhHHHHHHHhcCCCc--hhhhcccCc-cccchhHHH
Q 011037 356 LVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIP--PWHNSILEF-KWKRMDWLC 408 (495)
Q Consensus 356 ~~~~~~~~s~~~~~~~~~~~~sR~l~~~ardg~lP--~~~~~~~~~-~~p~~~~i~ 408 (495)
++.++++.+.+.+.++.+.++||++.++|||+.+| -.|+|...+ +.|..++.+
T Consensus 374 fi~iGi~sttlfss~s~liGasrvL~alakD~lfg~ll~fak~~s~~~nP~~av~v 429 (945)
T KOG1288|consen 374 FILIGILSTTLFSSMSGLIGASRVLEALAKDDLFGGLLFFAKGSSYDGNPYVAVGV 429 (945)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcccchhhheeeeccccCCCceeeeeH
Confidence 66677777888888999999999999999999999 556665444 455544433
No 41
>PHA02764 hypothetical protein; Provisional
Probab=99.86 E-value=3.2e-20 Score=169.72 Aligned_cols=274 Identities=11% Similarity=0.086 Sum_probs=175.6
Q ss_pred cCccccccCCHhHHHHHHhhhhhhhhhhhccHH-hHHhccChHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHhHH
Q 011037 71 SKQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQ-EAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLR 149 (495)
Q Consensus 71 ~~~~l~r~l~~~~~~~l~~~~~ig~g~~~~~~~-~~~~~~G~~~~~~~li~~~~~~~~~~~~ael~s~~P~~Gg~y~~~~ 149 (495)
+..++.|+.+.+|.++..++.+. .|.-..... ......|+..+++|+++++++++.+++++|+++++|++||.|.|.+
T Consensus 6 eSSGLVREvs~lDAF~~Nl~~m~-~Gi~Is~~~l~a~l~pG~nlLLAWLLGGLlALPgAL~YAELGSAmPrAGGdYVYIS 84 (399)
T PHA02764 6 KSSGIIKSFNILDIFSINLLYMG-ILSGISYPLFVSSLLKNVNLLFAILIGAVFEIPLLLMYYKLTTKFPLNGGDYAYIR 84 (399)
T ss_pred hcCCceeeccHHHHHHHHHHhhc-cchhHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEhH
Confidence 56789999999999999999874 232212121 1112246668999999999999999999999999999999999999
Q ss_pred HHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhh
Q 011037 150 VELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTR 229 (495)
Q Consensus 150 ~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~ 229 (495)
|++||.+|++.||..|+.+..+.+..+-.-. -++.+. |.. ....+..-+ .....+-..|.|
T Consensus 85 RAFGP~~GFLvG~a~WLtl~~G~Pal~~l~~------------~~~~i~-~~~-----~~f~~~~s~-~~i~~~i~~~~~ 145 (399)
T PHA02764 85 TAFSSKFYTIFGISLWLTYVLSQPILGDLVL------------LNFNIQ-NQF-----EQFLIVESL-FPIVLLIIANKK 145 (399)
T ss_pred HhhCccHHHHHHHHHHHHHHhhcchhhheee------------eeeeeH-HHH-----HHHHHHHHH-HHHHHHHHcccH
Confidence 9999999999999999998887664432110 000000 000 011111111 122223334577
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhheeccccCCCC--CCCCCChhhHHHHHHHHHHHhhchhHHHHhhhhhcCCCCchhHH
Q 011037 230 RSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLD--PFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIG 307 (495)
Q Consensus 230 ~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~~p~a 307 (495)
.+.|...++.....+ ++.+...+.-|.. ++.- -...+.+.....-.|.-.|+..+.++|.||-+|+...+
T Consensus 146 ~~~~~v~il~~a~~i------~aif~~~~s~n~~~~~f~~--snt~~~a~~~~l~~~~fi~a~~y~~~ei~n~~k~~~~g 217 (399)
T PHA02764 146 IYAKIVDILAIAQII------IAIFIAFKSFNFQYQNFTI--SNTLLSALLFDLSAFIFINAISYIAGEIKNIKKSSMIG 217 (399)
T ss_pred HHHHHHHHHHHHHHH------HHHHhhccceeEEEcceee--hHHHHHHHHHHHHHHHHhccHHHHHHHhhcchhhhhhh
Confidence 777766654433332 1111111111211 1111 12466677777778888999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccccccHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHhcC
Q 011037 308 LVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAH 387 (495)
Q Consensus 308 i~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~~~ardg 387 (495)
...+..++.++-+..++ .+ . .+..+......++-.....--.||.+++|+-|+
T Consensus 218 yf~s~~~~~~~~ii~sy--------~n------~-------------~il~~~~~~w~~~y~~~~~~~~srli~~~~fd~ 270 (399)
T PHA02764 218 YFVSYGIVAILSIIDSY--------SN------L-------------NILFALMPIWFFSYMPIANKIQSRLIQTMSFDK 270 (399)
T ss_pred hHHHHHHHHHHHHHHhh--------hh------H-------------HHHHHHHHHHHHhheeeecchHHHHHHHHHhhh
Confidence 88887777665444331 10 0 111111222333333334445799999999999
Q ss_pred CCchhhhcccCc
Q 011037 388 MIPPWHNSILEF 399 (495)
Q Consensus 388 ~lP~~~~~~~~~ 399 (495)
.+|+.|+|+||+
T Consensus 271 ~lpe~f~k~~~n 282 (399)
T PHA02764 271 VLPEKFSKINPN 282 (399)
T ss_pred hchHHHhccCCC
Confidence 999999999764
No 42
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.82 E-value=1.9e-17 Score=165.25 Aligned_cols=288 Identities=13% Similarity=0.129 Sum_probs=220.0
Q ss_pred HHHHHHhhhhhhhhhhhccHHhHHhccChHHHHHHHHHHHHHHHHHHH----Hhhhhhcccc-ccchhHhHHHHhchhHH
Q 011037 83 DLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFC----YTEFAVEIPV-AGGSFSFLRVELGDFVA 157 (495)
Q Consensus 83 ~~~~l~~~~~ig~g~~~~~~~~~~~~~G~~~~~~~li~~~~~~~~~~~----~ael~s~~P~-~Gg~y~~~~~~~g~~~g 157 (495)
..+....++++|+|++..|.. +|...++.++++.+++++..+. +.|.....|. ..+.++++++.+||.+|
T Consensus 7 ~w~~~l~gt~IGaGiL~LP~~-----ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~G 81 (397)
T TIGR00814 7 GWMLGLYGTAIGAGVLFLPIQ-----AGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKNPCEDITEVVEEHFGKNWG 81 (397)
T ss_pred hHHHHHHHHHHHHHHHHHHHH-----HHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHHHH
Confidence 445667788899999999875 3444566666666655555444 4454333343 66799999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhhHHHHHH
Q 011037 158 YIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWI 237 (495)
Q Consensus 158 ~~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~ 237 (495)
.+.++.|++........++...++.+.+++.+... ++.+ ...+..++++++...++..|.|...|++.+
T Consensus 82 ~ii~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~-------~~~p----~~~i~~lilv~il~~iv~~G~~~i~r~~~i 150 (397)
T TIGR00814 82 ILITLLYFFAIYPILLIYSVAITNDSASFLVNQLG-------TAPP----LRGLLSLALILILVAIMSFGEKLLFKIMGP 150 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CCCc----HHHHHHHHHHHHHHHHHHhcHHHHHHHHHH
Confidence 99999999999988888887777777776651100 1111 133567777777789999999999999999
Q ss_pred HHHHHHHHHHHHHHhheeccccCCCC--CCCCCChhhHHHHHHHHHHHhhchhHHHHhh----hhhcCC---CCchhHHH
Q 011037 238 SSIVSSCVIVFVIIVGFVHGKTTNLD--PFLPYGTEGVFEAAAVVYWSYTGFDMVATMA----EETKKP---SRDIPIGL 308 (495)
Q Consensus 238 ~~~~~l~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a----~E~k~p---~k~~p~ai 308 (495)
+...+++.++.+.+..+...+.+|.. +.....+..++.++...+|+|.|+|..++++ +|.+|| +|...|++
T Consensus 151 l~~~~ii~l~~l~~~lip~~~~~~L~~~p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i 230 (397)
T TIGR00814 151 LVFPLVLILVLLSLYLIPHWNGANLTTFPSFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIM 230 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHcCHHHHhcCCcccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHH
Confidence 99999998888888888888777764 2223356789999999999999999999999 777755 57788999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccc----c-cHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHH
Q 011037 309 VGSMCMITAVYCLMALALTMMVKYTEIDM----N-AAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQI 383 (495)
Q Consensus 309 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~----~-~p~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~~~ 383 (495)
..+..+..++|++..++.....+.++..+ + +.+....+....+....+..+...++..+|..+...+....+..+
T Consensus 231 ~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l 310 (397)
T TIGR00814 231 KGASLILVATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGI 310 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 99999999999999999998888877532 2 223334446677787888888888888888888888888888887
Q ss_pred Hhc
Q 011037 384 ARA 386 (495)
Q Consensus 384 ard 386 (495)
-++
T Consensus 311 ~~~ 313 (397)
T TIGR00814 311 VLN 313 (397)
T ss_pred HHH
Confidence 754
No 43
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=99.81 E-value=5.5e-19 Score=174.85 Aligned_cols=322 Identities=15% Similarity=0.195 Sum_probs=247.0
Q ss_pred cccCCHhHHHHHH-hhhhhhhhhhhccHHhHHhccChH-HHHHHHHHHHHHHHHHHHHhhhhhccc-cccchhHhHHHHh
Q 011037 76 QKCLTWWDLTWLC-FGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIP-VAGGSFSFLRVEL 152 (495)
Q Consensus 76 ~r~l~~~~~~~l~-~~~~ig~g~~~~~~~~~~~~~G~~-~~~~~li~~~~~~~~~~~~ael~s~~P-~~Gg~y~~~~~~~ 152 (495)
+-++|+|+.++.. +-++.|+-+|...+.+.++ +|.+ .++...++.+++..++++..-.+++-- ++||.|..++|.+
T Consensus 27 ~v~fg~~~gv~~~cmlni~gv~lflrl~wivgq-agi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg~yflis~sl 105 (643)
T KOG2083|consen 27 PVLFGWWDGVFVRCMLNIFGVILFLRLGWIVGQ-AGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGGVYFLISRSL 105 (643)
T ss_pred ceEEeeeehhhhhhhHHHHHHHHhhhhhheeec-chhhhhHHHHHHHHHHHHHHHHhHheeeecceeccCcEEEEEEecc
Confidence 4569999988874 4566689999999999998 9987 888888999999999999999999988 8999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhhH
Q 011037 153 GDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSS 232 (495)
Q Consensus 153 g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~ 232 (495)
|+..|...|..|.++..++.+.+..++++.+..++. ..+.. ..+-++.+.+++...+|..|+++..
T Consensus 106 g~efggsigiIy~f~~aVa~am~~vgfaEsv~~l~~-~~s~~-------------~i~gi~~vt~~ill~i~~ag~~w~~ 171 (643)
T KOG2083|consen 106 GPEFGGSIGIIYAFANAVATAMYVVGFAESVAHLFE-TESKE-------------MIDGIGSVTVLILLAINVAGVEWEA 171 (643)
T ss_pred cccccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHH-hccHH-------------HhcchhHHHHHHHHHhhhccchhHH
Confidence 999999999999999999999999999999999987 22111 1334788888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhheeccc-cC---------CCC-CCCCCCh---hhHHHHHHHHHHHhhchhHHHHhhhhhc
Q 011037 233 WLNWISSIVSSCVIVFVIIVGFVHGK-TT---------NLD-PFLPYGT---EGVFEAAAVVYWSYTGFDMVATMAEETK 298 (495)
Q Consensus 233 ~~~~~~~~~~l~~~~~~~i~~~~~~~-~~---------~~~-~~~~~~~---~~~~~~~~~~~~~f~G~e~~~~~a~E~k 298 (495)
|+|.++..+.++.+.-+.+..++..+ .+ +.. ++.| .+ .+++..+...+.+.+|.-+.++++++.|
T Consensus 172 k~q~~ll~il~iai~~f~~gs~~~~~~~~~g~~~~~a~~~~~n~~~-~~~~~~tfF~vf~vfFpaatgilaG~nisGdL~ 250 (643)
T KOG2083|consen 172 KLQIVLLLILLIAIADFLVGSFFSPNEFSSGFFGYRADIFVENLNP-DIDPGYTFFSVFAVFFPAATGILAGANISGDLK 250 (643)
T ss_pred HHHHHHHHHHHHHHHHhhhhhccChhhhcccccccchhhcccCCCC-CcCCCCceEeeeeeecchhhhhhccccccCCCC
Confidence 99999988888888777776665322 00 000 1111 11 3577777778889999999999999999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcccccccc-----cc----HHHHHHHHhC-chHHHHHHHHHHHHHHHHH
Q 011037 299 KPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDM-----NA----AYSIAFRQIG-MNWAKYLVSVCALKGMTTS 368 (495)
Q Consensus 299 ~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~-----~~----p~~~~~~~~~-~~~~~~~~~~~~~~s~~~~ 368 (495)
+|++++|++.+.++.....+|+.+..-.....-.+.... .+ .+.+-++... ..........+...+.+++
T Consensus 251 ~Pq~~IP~GaL~Ai~vst~~yl~~i~~~Ga~~~r~~~~~~~~~~~~~c~~gl~~~~qv~smvS~~~Pl~~AGi~~a~LSs 330 (643)
T KOG2083|consen 251 DPQKAIPLGALLAIGVSTLLYLIFIADLGATPVRDALENWNDTSTKSCPIGLTNYLQVMSMVSTFGPLITAGILAAELSS 330 (643)
T ss_pred CchhhcccchhhhhhhhhhhhhhhhhhcccHHHHHHhccchhhccCCCccchHHHHHHHHhHhhcccchhhHHHHHHHHH
Confidence 999999999999999999999888776654433322110 11 1222222111 1222346677778888888
Q ss_pred HHHHhhchhHHHHHHHhcCCCc--hhhhcccCc-cccchhHHHHHHHH
Q 011037 369 LLVGSLGQARYTTQIARAHMIP--PWHNSILEF-KWKRMDWLCGNHCT 413 (495)
Q Consensus 369 ~~~~~~~~sR~l~~~ardg~lP--~~~~~~~~~-~~p~~~~i~~~~~~ 413 (495)
..+.+.++.++++++.+|+..| .+++|-.++ ..|.+..+++....
T Consensus 331 alsslVsap~V~QaL~kd~~yp~i~~f~KgyGkn~~Plrg~~l~~~~a 378 (643)
T KOG2083|consen 331 ALSSLVSAPKVLQALCKDSLYPSILFFAKGYGKNKEPLRGYLLTFLTA 378 (643)
T ss_pred HHHHHHhhhHHHHHHHhcCCCccHHHHHccCCccccchHHHHHHHHhH
Confidence 9999999999999999999999 566654444 33555544444433
No 44
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=99.80 E-value=8.6e-17 Score=158.34 Aligned_cols=286 Identities=11% Similarity=0.140 Sum_probs=209.3
Q ss_pred HhhhhhhhhhhhccHHhHHhccCh--H-HHHHHHHHHHHHHHHHHHHhhhhhccccccchhHhHHHHhchhHHHHHHHHH
Q 011037 88 CFGSVVGSGIFVITGQEAKKHAGP--A-IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNI 164 (495)
Q Consensus 88 ~~~~~ig~g~~~~~~~~~~~~~G~--~-~~~~~li~~~~~~~~~~~~ael~s~~P~~Gg~y~~~~~~~g~~~g~~~g~~~ 164 (495)
.++..+|.|.+..|+..-.. +|. . ++++|+++++..-+.+++ +.|++||.|.+..+.+||+.|++.+|..
T Consensus 4 lFamffGAGNlIfPp~lG~~-aG~~~~~a~lgf~ltgV~lpllgl~------av~~~gG~~~~l~~~~g~~f~~lf~~~~ 76 (378)
T TIGR00796 4 LFALFFGAGNIIFPPMLGLA-AGEHVWTAALGFLLTGVGLPLLGLI------ALALVGGGYDSLSARIGKVFGILFTVIL 76 (378)
T ss_pred HHHHHHhhhHHhhhHHHHHH-hCccHHHHHHHHHHHHHHHHHHHHh------eeeecCCCHHHHHHHhChHHHHHHHHHH
Confidence 34555789999988887777 664 3 788999999998888887 8999999999999999999999999987
Q ss_pred HHHHHHH-----HHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Q 011037 165 LLEAVVG-----AAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISS 239 (495)
Q Consensus 165 ~l~~~~~-----~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~ 239 (495)
++..-.. .+..++.++ +..+++ .. .......+..+++..+..++++++.|...+++.+++
T Consensus 77 ~l~iGP~~aiPRtaa~s~e~~--i~p~~~------------~~-~~~~~l~i~siiff~i~~~l~~~~~k~~~~iGk~LT 141 (378)
T TIGR00796 77 YLTIGPLFAIPRTATVSFEMG--IAPLLH------------SP-TSLLALFIFSLIFFAVVLLLSLNPSKLIDRVGKFLT 141 (378)
T ss_pred HHHHHhchhhhHHHHHHHHHH--HHhccC------------cc-cchHHHHHHHHHHHHHHHHHHcCcccHHHHhHHHHH
Confidence 7554322 333333333 333333 00 001113456777778888899999999999999999
Q ss_pred HHHHHHHHHHHHhheeccccCCCCCCCCCCh-hhHHHHHHHHHHHhh-------chhHHHHhhh-hhcCCCCchhHHHHH
Q 011037 240 IVSSCVIVFVIIVGFVHGKTTNLDPFLPYGT-EGVFEAAAVVYWSYT-------GFDMVATMAE-ETKKPSRDIPIGLVG 310 (495)
Q Consensus 240 ~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~f~-------G~e~~~~~a~-E~k~p~k~~p~ai~~ 310 (495)
.++++.++.+++.++.+...+...+..+..- ..+..++....+++. |+-....+.+ |.|||+|..|+++..
T Consensus 142 P~lLi~l~~lii~g~~~p~g~~~~~~~~~~~~~~f~~g~l~GY~TmD~laal~fg~iiv~~i~~~g~~~~~~~~~~~i~~ 221 (378)
T TIGR00796 142 PALLVTLLALIIKALLWPAGPILAASGAYASQQAFSKGFLEGYLTMDALAALVFGIIVVNAIRSRGVTKPKKITKYTIKA 221 (378)
T ss_pred HHHHHHHHHHHHHHHHcCCCCcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9999999999998887532211111111101 347788888888888 8888888888 999999999999999
Q ss_pred HH-HHHHHHHHHHHHHHHHhccccccc----cccHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHh
Q 011037 311 SM-CMITAVYCLMALALTMMVKYTEID----MNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIAR 385 (495)
Q Consensus 311 ~~-~~~~~~y~~~~~~~~~~~~~~~~~----~~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~~~ar 385 (495)
++ ..+.+.|+...++.....+.++.. ..+...++.++..++.+..++.+.+.++++++.++.+.+.++
T Consensus 222 G~ia~i~l~~vY~~L~~lGa~~~~~~~~~~~~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~------- 294 (378)
T TIGR00796 222 GLIAAVLLAFIYLSLFYLGATSAAAAGDAVNGAQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSE------- 294 (378)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcHhhhcccCCcHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 98 666666777788777766655443 234667778888888999999999999999999998887544
Q ss_pred cCCCchhhhcccCccccchhHHHH
Q 011037 386 AHMIPPWHNSILEFKWKRMDWLCG 409 (495)
Q Consensus 386 dg~lP~~~~~~~~~~~p~~~~i~~ 409 (495)
+|+|.++| .|.+++++.
T Consensus 295 ------~f~~~~~k-~~y~~~v~~ 311 (378)
T TIGR00796 295 ------YFHKLVPK-LSYKTWVIV 311 (378)
T ss_pred ------HHHHhcCC-CCHHHHHHH
Confidence 45666554 444444443
No 45
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.78 E-value=1.4e-15 Score=152.23 Aligned_cols=291 Identities=17% Similarity=0.168 Sum_probs=238.9
Q ss_pred ccCCHhHHHHHHhhhhhhhhhhhccHHhHHhccChH-HHHHHHHHHHHHHHHHHHHhhhhhccccccchhHhHHHHhchh
Q 011037 77 KCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDF 155 (495)
Q Consensus 77 r~l~~~~~~~l~~~~~ig~g~~~~~~~~~~~~~G~~-~~~~~li~~~~~~~~~~~~ael~s~~P~~Gg~y~~~~~~~g~~ 155 (495)
|+-+.+...++..|+.+|.|++..|-.... +|.. ..+..++++.++...++.++|...+.++..+.-..+++.+||.
T Consensus 1 ~~~~~~~~~~li~GTaIGAGmLaLP~~~~~--~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~~~~~~~~a~~~lG~~ 78 (394)
T PF03222_consen 1 KNNSILGGVLLIAGTAIGAGMLALPIATAG--AGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPEGSSLTSMAEKYLGKK 78 (394)
T ss_pred CCchHHHHHHHHHHccHhHHHHHHHHHHHh--CchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChH
Confidence 455778889999999999999998876543 6765 8888999999999999999999999999888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhhHHHH
Q 011037 156 VAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLN 235 (495)
Q Consensus 156 ~g~~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~ 235 (495)
++++.+..|++........+..+.++.+.+.++...+.++ + ......++.++...+.+.|.|...|++
T Consensus 79 g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~~~~-------~-----~~~~~~~f~~i~~~iv~~g~~~v~~~n 146 (394)
T PF03222_consen 79 GGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLGTDL-------S-----PWLSSLLFTIIFGGIVYFGTKAVDRIN 146 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCCC-------c-----HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 9999999998877777778888888888888772111111 1 235566677777888889999999999
Q ss_pred HHHHHHHHHHHHHHHHhheeccccCCCCCC--CCCChhhHHHHHHHHHHHhhchhHHHHhhhhhcCCCCchhHHHHHHHH
Q 011037 236 WISSIVSSCVIVFVIIVGFVHGKTTNLDPF--LPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMC 313 (495)
Q Consensus 236 ~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~~p~ai~~~~~ 313 (495)
..+...+++.++.+.+.++.+.+.++.... .+..+...+..++..+++|.-...++.+....++-+|+++|++..+..
T Consensus 147 ~~lv~~~i~~~~~l~~~~~p~~~~~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~ai~~Gs~ 226 (394)
T PF03222_consen 147 RVLVFGMIISFIILVVYLIPHWNPSNLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRKAIIIGSL 226 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCHHHhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHHHHHHHHH
Confidence 999999999999999988888887776542 235678889999999999999999999999999777889999999999
Q ss_pred HHHHHHHHHHHHHHHhccccccc----cc---cHHHHHHH-HhCchHHHHHHHHHHHHHHHHHHHHHhhchhHHHH
Q 011037 314 MITAVYCLMALALTMMVKYTEID----MN---AAYSIAFR-QIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTT 381 (495)
Q Consensus 314 ~~~~~y~~~~~~~~~~~~~~~~~----~~---~p~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~ 381 (495)
+..++|++...+.....|.++.. .+ ++.....+ ..++++...+..+...++..+|..+...+....+.
T Consensus 227 i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~ 302 (394)
T PF03222_consen 227 IPLVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLA 302 (394)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888877642 12 34444444 35667888888888888898898888777766654
No 46
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=99.76 E-value=2e-15 Score=148.34 Aligned_cols=286 Identities=15% Similarity=0.176 Sum_probs=242.7
Q ss_pred cCCHhHHHHHHhhhhhhhhhhhccHHhHHhccChHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHhHHHHhchhHH
Q 011037 78 CLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVA 157 (495)
Q Consensus 78 ~l~~~~~~~l~~~~~ig~g~~~~~~~~~~~~~G~~~~~~~li~~~~~~~~~~~~ael~s~~P~~Gg~y~~~~~~~g~~~g 157 (495)
|+|.+|...+.+..++|.+....+...... +| .+|++.+++++......+.+..+.+++|+.. .+++.++.+||+.|
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~-~~-d~Wi~~ll~~~~~l~~~~l~~~l~~~~p~~~-l~~~~~~~~Gk~lg 77 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQ-AG-DAWISVLLGGLIGLLLALLIYYLLKRFPGKT-LVEISEKLFGKWLG 77 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHH-cC-CcHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHhCcHHH
Confidence 578999999999999999999999988887 66 8999999999999999999999999999864 89999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhhHHHHHH
Q 011037 158 YIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWI 237 (495)
Q Consensus 158 ~~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~ 237 (495)
.+.+..+.+.+....+......++.+..... |+.| ...+...+++.+.+....|.+..+|...+
T Consensus 78 ~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~l-----------p~TP-----~~~i~~~~ll~~~y~a~~G~e~i~R~~~~ 141 (320)
T PF03845_consen 78 KIINLLYILYFLLISALVLREFSEFIKTYLL-----------PETP-----IWVIILLFLLVAAYAARKGIEVIARVAEI 141 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------CcCC-----HHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 9999999999999999999999999998765 3444 44677788888999999999999998888
Q ss_pred HHHHHHHHHHHHHHhheeccccCCCCCCCCCChhhHHHHHHHHHHHhhchhHHHHhhhhhcCCCCchhHHHHHHHHHHHH
Q 011037 238 SSIVSSCVIVFVIIVGFVHGKTTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITA 317 (495)
Q Consensus 238 ~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~~p~ai~~~~~~~~~ 317 (495)
...+.++.++.+.+......+++|..|..+.|+..++.+.....+.|.|.|....+.+.+|||+| ..|....+...+++
T Consensus 142 ~~~~~~i~~~~i~~~~~~~~~~~~l~P~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~~-~~k~~~~~~~~~~~ 220 (320)
T PF03845_consen 142 LFPIFLILLLLILLLSIPNIDWDNLLPVLESGIKPILKGSLVISFPFGGIEILLFLFPFVKDKKK-LKKSLLIAILISGL 220 (320)
T ss_pred HHHHHHHHHHHHHHHhcccCCHHHeeCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchH-HHHHHHHHHHHHHH
Confidence 88888888888777777888899999999999999999999999999999999999999999855 68999999999999
Q ss_pred HHHHHHHHHHHhcccccccc-ccHHHHHHHHhCch-H---HHHHHHHHHHHHHHHHHHHHhhchhHHHHHH
Q 011037 318 VYCLMALALTMMVKYTEIDM-NAAYSIAFRQIGMN-W---AKYLVSVCALKGMTTSLLVGSLGQARYTTQI 383 (495)
Q Consensus 318 ~y~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~-~---~~~~~~~~~~~s~~~~~~~~~~~~sR~l~~~ 383 (495)
+|.+..+....+.+.++... .-|.....+....+ . ...++....+.+.+......++.+++.+..+
T Consensus 221 ~~~~~~~~~i~vfG~~~~~~~~~P~~~~~~~i~i~~fieRld~~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 291 (320)
T PF03845_consen 221 FLLFIIFITIGVFGPELAKKLTYPVLELARSIEIGDFIERLDSIFILIWIIGIFIKISLYLYAASEGLSQL 291 (320)
T ss_pred HHHHHHHHHHHhcCHHHHhceecHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888888776544 35888877755332 3 3345555556666667777777777775443
No 47
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.67 E-value=2.2e-13 Score=135.09 Aligned_cols=288 Identities=12% Similarity=0.072 Sum_probs=226.0
Q ss_pred HHHhhhhhhhhhhhccHHhHHhccChH-HHHHHHHHHHHHHHHHHHHhhhhhcc-ccccchhHhHHHHhchhHHHHHHHH
Q 011037 86 WLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEI-PVAGGSFSFLRVELGDFVAYIAAGN 163 (495)
Q Consensus 86 ~l~~~~~ig~g~~~~~~~~~~~~~G~~-~~~~~li~~~~~~~~~~~~ael~s~~-P~~Gg~y~~~~~~~g~~~g~~~g~~ 163 (495)
....|+.+|.|++..|-.... +|.. .++..++++.++......+.|..... |...+.-..+++.+|+.++.+.+..
T Consensus 26 l~l~GTAIGAGmLfLPI~~g~--~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG~~g~~i~~il 103 (443)
T PRK13629 26 LGLFGTAIGAGVLFFPIRAGF--GGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITFL 103 (443)
T ss_pred HHHHHHHHhHHHHHHHHHHhc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHcChhHHHHHHHH
Confidence 556677799999998876533 6766 78888899999999999999999998 5555788888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q 011037 164 ILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSS 243 (495)
Q Consensus 164 ~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~l 243 (495)
|++........+...+.+.+.+.+.+.. + .++.+ ..+.+++++.+...+...|.|..-|++.++...++
T Consensus 104 Yff~ly~ll~aY~~~itn~l~sfl~~ql--~----~~~~~-----r~l~slifv~~l~~iv~~G~~~v~kv~~~Lv~~~i 172 (443)
T PRK13629 104 YFFAICPLLWIYGVTITNTFMTFWENQL--G----FAPLN-----RGFVALFLLLLMAFVIWFGKDLMVKVMSYLVWPFI 172 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc--C----cCCcc-----HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 9988877777777777777776543110 0 00111 44788899999999999999999999999999999
Q ss_pred HHHHHHHHhheeccccCCCCCCC----CC----C-hhhHHHHHHHHHHHhhchhHHHHhhhh----hc------CCCCch
Q 011037 244 CVIVFVIIVGFVHGKTTNLDPFL----PY----G-TEGVFEAAAVVYWSYTGFDMVATMAEE----TK------KPSRDI 304 (495)
Q Consensus 244 ~~~~~~~i~~~~~~~~~~~~~~~----~~----~-~~~~~~~~~~~~~~f~G~e~~~~~a~E----~k------~p~k~~ 304 (495)
+.++.+.+..+.+.+.+|+.... +. + ...++.+++..+++|.-...++.++.. .+ +.+|..
T Consensus 173 ~~l~~l~~~LiP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~ 252 (443)
T PRK13629 173 ASLVLISLSLIPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKC 252 (443)
T ss_pred HHHHHHHHHHHHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHH
Confidence 99999999999888777664211 11 1 134788889999999888888887766 42 224778
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccccccc----cccH-HHHHHHHhCc---------hHHHHHHHHHHHHHHHHHHH
Q 011037 305 PIGLVGSMCMITAVYCLMALALTMMVKYTEID----MNAA-YSIAFRQIGM---------NWAKYLVSVCALKGMTTSLL 370 (495)
Q Consensus 305 p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~----~~~p-~~~~~~~~~~---------~~~~~~~~~~~~~s~~~~~~ 370 (495)
.|++..+..+..++|++..+++....+++++. ++.+ +....+..+. +....+..+...++..++.+
T Consensus 253 ~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFl 332 (443)
T PRK13629 253 SQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFF 332 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988863 3445 5555665554 66777788888888888888
Q ss_pred HHhhchhHHHHHHHhc
Q 011037 371 VGSLGQARYTTQIARA 386 (495)
Q Consensus 371 ~~~~~~sR~l~~~ard 386 (495)
+...+..-.+..+.++
T Consensus 333 Gv~LGl~E~l~gl~~~ 348 (443)
T PRK13629 333 GHYLGTLEGLNGLILK 348 (443)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888888888764
No 48
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.67 E-value=1.8e-13 Score=138.07 Aligned_cols=285 Identities=14% Similarity=0.066 Sum_probs=227.5
Q ss_pred cccccCCHhHHHHHHhhhhhhhhhhhccHHhHHhccChH-HHHHHHHHHHHHHHHHHHHhhhhhcccccc-chhHhHHHH
Q 011037 74 PLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVAG-GSFSFLRVE 151 (495)
Q Consensus 74 ~l~r~l~~~~~~~l~~~~~ig~g~~~~~~~~~~~~~G~~-~~~~~li~~~~~~~~~~~~ael~s~~P~~G-g~y~~~~~~ 151 (495)
+.+++.+..+.+....++.+|+|++..|-.. +. +|-. .++..++++.++....+.+.|.....|+.. +.+.-+++.
T Consensus 4 ~~~~~~s~~~~vl~l~gT~IGAGvL~lP~a~-~~-~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~ 81 (415)
T COG0814 4 SMKKTSSDLGGVLILAGTAIGAGVLFLPVAF-GG-GGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGKASITSLVEDY 81 (415)
T ss_pred cccCCcchHHHHHHHHccccccchhhhhHHh-cC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHH
Confidence 4577788899999999999999999887644 33 6766 888899999999999999999999999884 899999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhh
Q 011037 152 LGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRS 231 (495)
Q Consensus 152 ~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~ 231 (495)
+||.++++.+..+.+........+....++.+...+++... .+.....+..+++...+..+.+.|.+..
T Consensus 82 ~G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~-----------~~~~~r~~~~lif~~~~~~l~~~~~~~~ 150 (415)
T COG0814 82 LGKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFG-----------LNPLPRKLGSLIFALVLAFLSWLGTLAV 150 (415)
T ss_pred hCcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcc-----------cCCcchHHHHHHHHHHHHHHHHhchhHH
Confidence 99999999999999998888899999999999888772111 1001255677778888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhheeccccCCCCCC--C-CCChhhHHHHHHHHHHHhhchhHHHHhhhhhcCCCCc-hhHH
Q 011037 232 SWLNWISSIVSSCVIVFVIIVGFVHGKTTNLDPF--L-PYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRD-IPIG 307 (495)
Q Consensus 232 ~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~-~p~a 307 (495)
-|.+..+...+++.++++....+...+.++.... . +..+..++.+++..+++|.+......+..|+|+++|+ ++|+
T Consensus 151 lk~ts~l~~~~v~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~k~ 230 (415)
T COG0814 151 LKITSLLVFGKVIYLVLLVVYLIPHWNPANLFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRKA 230 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCHHHHhcccccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHHHHH
Confidence 9999999999999999999988887766655432 2 3457789999999999999999999999999988776 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccc-------cccHHHHHHH-HhCchHHHHHHHHHHHHHHHHHHHH
Q 011037 308 LVGSMCMITAVYCLMALALTMMVKYTEID-------MNAAYSIAFR-QIGMNWAKYLVSVCALKGMTTSLLV 371 (495)
Q Consensus 308 i~~~~~~~~~~y~~~~~~~~~~~~~~~~~-------~~~p~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~~~ 371 (495)
+..+..+..++|+...+......+.+... ++.....+.. ....+.......+...++..++..+
T Consensus 231 ~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlg 302 (415)
T COG0814 231 ILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFLG 302 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999988888776321 1233444433 3444555555555555555555444
No 49
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.67 E-value=2.7e-13 Score=135.18 Aligned_cols=291 Identities=16% Similarity=0.168 Sum_probs=227.4
Q ss_pred CHhHHHHHHhhhhhhhhhhhccHHhHHhccChH-HHHHHHHHHHHHHHHHHHHhhhhhccccccchhHhHHHHhchhHHH
Q 011037 80 TWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAY 158 (495)
Q Consensus 80 ~~~~~~~l~~~~~ig~g~~~~~~~~~~~~~G~~-~~~~~li~~~~~~~~~~~~ael~s~~P~~Gg~y~~~~~~~g~~~g~ 158 (495)
+.+...++..|+.+|.|++..|-.... +|.. +.+..++++.++...++.++|.....|...+....+++.+||..++
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~--~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~~~~~~~~a~~~LG~~g~~ 81 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAG--VGFSVTLILLIGLWALMCYTALLLLEVYQHVPADTGLGTLAKRYLGRYGQW 81 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHh--ChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhChHHHH
Confidence 556778888999999999998876544 6765 7778888888899999999999888887778999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Q 011037 159 IAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWIS 238 (495)
Q Consensus 159 ~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~ 238 (495)
+.+..|++........+..+.++.+.+.++..... +.+ .....+.+.++...+.+.|.|...|++.++
T Consensus 82 i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~-------~i~-----~~~~~l~F~~~~~~iv~~g~~~v~~~n~~L 149 (403)
T PRK15132 82 LTGFSMMFLMYALTAAYISGAGELLASSISDWTGI-------SMS-----PTAGVLLFTLVAGGVVCVGTSSVDLFNRFL 149 (403)
T ss_pred HHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccC-------CCC-----hHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 99999988777777777777666666655411000 111 124556666777778888999999999999
Q ss_pred HHHHHHHHHHHHHhheeccccCCCCCCCCCChhhHHHHHHHHHHHhhchhHHHHhhhhhcCCCCchhHHHHHHHHHHHHH
Q 011037 239 SIVSSCVIVFVIIVGFVHGKTTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAV 318 (495)
Q Consensus 239 ~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~~p~ai~~~~~~~~~~ 318 (495)
...+++.++.+....+.+.+.+|+... +.+...++.+++..+++|.-...++.+....++-+|.++|++..+..+..++
T Consensus 150 ~~~~ii~~~~~~~~l~p~~~~~~L~~~-~~~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k~i~~Gs~i~li~ 228 (403)
T PRK15132 150 FSAKIIFLVVMLALMMPHIHKVNLLTL-PLQQGLALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRWVFIIGSAIPLVA 228 (403)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHhcC-CccccHHHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHHHHHHHHHHHHHH
Confidence 999998888877777777777766422 1111247888999999999999999999999887788999999999999999
Q ss_pred HHHHHHHHHHhccccccc----ccc---HHHHHH-HHhCchHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHh
Q 011037 319 YCLMALALTMMVKYTEID----MNA---AYSIAF-RQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIAR 385 (495)
Q Consensus 319 y~~~~~~~~~~~~~~~~~----~~~---p~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~~~ar 385 (495)
|++...++....|.++.. ++. +..+.+ +..+.++...+..+...++..+|.++...+....+..+-+
T Consensus 229 yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~ 303 (403)
T PRK15132 229 YIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQ 303 (403)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999988887642 222 343433 3467788888888888888888888888877777766543
No 50
>PRK10483 tryptophan permease; Provisional
Probab=99.67 E-value=2.3e-13 Score=135.02 Aligned_cols=295 Identities=14% Similarity=0.046 Sum_probs=227.6
Q ss_pred cccccCCHhHHHHHHhhhhhhhhhhhccHHhHHhccChH-HHHHHHHHHHHHHHHHHHHhhhhhccccccchhHhHHHHh
Q 011037 74 PLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVEL 152 (495)
Q Consensus 74 ~l~r~l~~~~~~~l~~~~~ig~g~~~~~~~~~~~~~G~~-~~~~~li~~~~~~~~~~~~ael~s~~P~~Gg~y~~~~~~~ 152 (495)
..|++.+.+...++..|+.+|.|++..|-.... .|-. +.+..++.++++..+++.+.|...++|+.-+....+++.+
T Consensus 6 ~~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~--~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~g~~~~tma~~~L 83 (414)
T PRK10483 6 TTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSG--AWFFWSMAALIFTWFCMLHSGLMILEANLNYRIGSSFDTITKDLL 83 (414)
T ss_pred cccCCCcHHHHHHHHHHchHhHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHc
Confidence 346789999999999999999999998875544 6765 8888999999999999999999999998888999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhhH
Q 011037 153 GDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSS 232 (495)
Q Consensus 153 g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~ 232 (495)
||.+..+.+..+.+-.-.....+..+.++.+...++. . ++ +.+ ...-.+++..+...+.+.|.|...
T Consensus 84 G~~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~-~--~~-----~i~-----~~~~~llF~~~~~~iv~~gt~~vd 150 (414)
T PRK10483 84 GKGWNVVNGISIAFVLYILTYAYISASGSILHHTFAE-M--SL-----NVP-----ARAAGFGFALLVAFVVWLSTKAVS 150 (414)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHh-c--CC-----CCc-----HHHHHHHHHHHHHHHHHhhhhHHH
Confidence 9998777666665444444555666677777777651 0 01 011 336778888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhheeccccCCCCCCC--C-CChhhHHHHHHHHHHHhhchhHHHHhhhhhcCCCCchhHHHH
Q 011037 233 WLNWISSIVSSCVIVFVIIVGFVHGKTTNLDPFL--P-YGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLV 309 (495)
Q Consensus 233 ~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~~p~ai~ 309 (495)
|++.++...+++.++.++...+.+.+.++..... . ..+...+.+++..+++|.-...++.+.+..++-.|.++|+++
T Consensus 151 ~~n~~l~~~~i~~f~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~kir~~I~ 230 (414)
T PRK10483 151 RMTAIVLGAKVITFFLTFGSLLGHVQPATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVKCLV 230 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCHHHHhccccccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCHHHHHHHHH
Confidence 9999999999998887777766666665543211 1 224567889999999999999999999998865568999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccc----cc---cHHHHHHH-HhCchHHHHHHHHHHHHHHHHHHHHHhhchhHHHH
Q 011037 310 GSMCMITAVYCLMALALTMMVKYTEID----MN---AAYSIAFR-QIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTT 381 (495)
Q Consensus 310 ~~~~~~~~~y~~~~~~~~~~~~~~~~~----~~---~p~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~ 381 (495)
.+..+..++|++...++....|.+++. ++ +.+....+ ..+.+....+..+...++..+|.++...+....+.
T Consensus 231 iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~ 310 (414)
T PRK10483 231 YGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLA 310 (414)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988877642 12 22323333 45666777778888888888888877776666655
Q ss_pred HH
Q 011037 382 QI 383 (495)
Q Consensus 382 ~~ 383 (495)
.+
T Consensus 311 D~ 312 (414)
T PRK10483 311 DL 312 (414)
T ss_pred HH
Confidence 54
No 51
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.66 E-value=2.5e-13 Score=134.70 Aligned_cols=289 Identities=12% Similarity=0.047 Sum_probs=218.1
Q ss_pred CHhHHHHHHhhhhhhhhhhhccHHhHHhccChH-HHHHHHHHHHHHHHHHHHHhhhhhccccccchhHhHHHHhchhHHH
Q 011037 80 TWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAY 158 (495)
Q Consensus 80 ~~~~~~~l~~~~~ig~g~~~~~~~~~~~~~G~~-~~~~~li~~~~~~~~~~~~ael~s~~P~~Gg~y~~~~~~~g~~~g~ 158 (495)
+.....++..|+.+|.|++..|-.... +|-. +.+..++.++++..+++.+.|...++|..-+.-..+++.+||.+..
T Consensus 10 ~~~gg~~iIaGT~IGAGMLaLP~~~a~--~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~g~~l~tma~~~LG~~g~~ 87 (415)
T PRK09664 10 SAFWGVMVIAGTVIGGGMFALPVDLAG--AWFFWGAFILIIAWFSMLHSGLLLLEANLNYPVGSSFNTITKDLIGNTWNI 87 (415)
T ss_pred chhhhhHHhhhccHhHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcChHHHH
Confidence 666688899999999999998875544 6754 8888999999999999999999999998888999999999998777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Q 011037 159 IAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWIS 238 (495)
Q Consensus 159 ~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~ 238 (495)
+.+..+.+-.-.....+..+.++.+...++... ++ +.+ .....+++.++...+.+.|.|...|+++++
T Consensus 88 i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~--~~-----~i~-----~~~~~llF~~~~~~~v~~gt~~vd~~nr~l 155 (415)
T PRK09664 88 ISGITVAFVLYILTYAYISANGAIISETISMNL--GY-----HAN-----PRIVGICTAIFVASVLWISSLAASRITSLF 155 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhc--cC-----CCc-----HHHHHHHHHHHHHHHHHhchhHHHHHHHHH
Confidence 777666544444455566667777777665100 00 111 235568888999999999999999999999
Q ss_pred HHHHHHHHHHHHHhheeccccCCCCCCCC-CC----hhhHHHHHHHHHHHhhchhHHHHhhhhhcCCCCchhHHHHHHHH
Q 011037 239 SIVSSCVIVFVIIVGFVHGKTTNLDPFLP-YG----TEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMC 313 (495)
Q Consensus 239 ~~~~l~~~~~~~i~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~~p~ai~~~~~ 313 (495)
...+++.++..+.....+.+.++...... .+ +..++.+++..+++|.-...++.+....++-.|..+|+++.+..
T Consensus 156 ~~~~ii~f~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~~~kaIl~Gs~ 235 (415)
T PRK09664 156 LGLKIISFVIVFGSFFFQVDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKDKLIKSVVFGSL 235 (415)
T ss_pred HHHHHHHHHHHHHHHhhcccHHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccHHHHHHHHHHHHH
Confidence 99999888887777777777666542211 11 34577788999999999999999998888666889999999999
Q ss_pred HHHHHHHHHHHHHHHhccccccc----cc---cHH-HHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhchhHHHHH
Q 011037 314 MITAVYCLMALALTMMVKYTEID----MN---AAY-SIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQ 382 (495)
Q Consensus 314 ~~~~~y~~~~~~~~~~~~~~~~~----~~---~p~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~~ 382 (495)
+..++|++...+.....|.+++. +. +.+ ....+...+++...+..+...++..+|.++...+....+..
T Consensus 236 IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D 312 (415)
T PRK09664 236 LALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLAD 312 (415)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888877642 11 122 22233456677777777777778877777766655555444
No 52
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=99.30 E-value=1.4e-09 Score=107.82 Aligned_cols=293 Identities=16% Similarity=0.178 Sum_probs=195.0
Q ss_pred CccccccCCHhHHHHHHhhhhhhhhhhhccHHhHHhccChHHHHHHHHHHHHHHHHHHHHhhhhhcccc-------ccch
Q 011037 72 KQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPV-------AGGS 144 (495)
Q Consensus 72 ~~~l~r~l~~~~~~~l~~~~~ig~g~~~~~~~~~~~~~G~~~~~~~li~~~~~~~~~~~~ael~s~~P~-------~Gg~ 144 (495)
+++.+++++.++.++.++++.+|+|-......++.. +||+++..+.+.+++...+.++=.-|+.+|.+ .||.
T Consensus 12 ~~~~~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~-GGPGAiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~G~~~GGP 90 (416)
T PF01235_consen 12 KKEEEGGISPFQALCTALAGTVGTGNIAGVATAIAI-GGPGAIFWMWISALLGMATKYAEVTLAQKYREKDEDGEYRGGP 90 (416)
T ss_pred CCCCCCCcChHHHHHHHHHhccCcchHHHHHHHHHh-hchhHHHHHHHHHHHHHHHHHHHHHHHHHheEECCCCCEeecH
Confidence 334567899999999999999999999998888887 99997777777788888888888888877763 4789
Q ss_pred hHhHHHHhchh-HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHH
Q 011037 145 FSFLRVELGDF-VAYIAAGNILLEAVVG-AAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNG 222 (495)
Q Consensus 145 y~~~~~~~g~~-~g~~~g~~~~l~~~~~-~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (495)
..|.++.+|.+ ++.+.+.+....+... ....+...++.+...++ .| ....++++.+++.+
T Consensus 91 ~yyi~~gl~~k~la~~fai~~~~~~~~~~~~~Q~nsi~~~~~~~f~-------------i~-----~~~~gi~l~~l~~~ 152 (416)
T PF01235_consen 91 MYYIEKGLGSKWLAILFAIFLIIAFGIGFNMVQANSIADALSSAFG-------------IP-----PWITGIILAILVAL 152 (416)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcc-------------cc-----HHHHHHHHHHHHHH
Confidence 99999999854 4544444433443332 44444555555554333 11 23567777778888
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHhheeccccCCCC---------CCCCC----ChhhHH------HHHHHHHHH
Q 011037 223 IAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLD---------PFLPY----GTEGVF------EAAAVVYWS 283 (495)
Q Consensus 223 i~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~---------~~~~~----~~~~~~------~~~~~~~~~ 283 (495)
+..-|+|..+++...+..++.+.-++..+..+. .+.++.+ .|.+. |..|.. .|+.=..|+
T Consensus 153 vi~GGikrI~~v~~~lVP~Ma~~Yi~~~l~ii~-~n~~~ip~~~~~If~~AF~~~aa~GG~~G~~i~~ai~~Gv~Rg~fS 231 (416)
T PF01235_consen 153 VIFGGIKRIAKVSEKLVPFMAILYILGGLIIII-INIDQIPAAFSLIFSSAFTPKAAFGGFAGSTIMMAIRQGVARGLFS 231 (416)
T ss_pred HHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHcCCccchhhHHHHHHHHHHHHhhhhhhcc
Confidence 888899999999999988887765555443332 1111111 12222 222211 122223333
Q ss_pred ---hhchhHHHHhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccccc--cccH-HHHHHHHhCchHHHHHH
Q 011037 284 ---YTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEID--MNAA-YSIAFRQIGMNWAKYLV 357 (495)
Q Consensus 284 ---f~G~e~~~~~a~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~--~~~p-~~~~~~~~~~~~~~~~~ 357 (495)
=.|....+|.+.|+++|.|.--.+++-..+-+.++..+..+.+.....++... +... ...+++..-+++...++
T Consensus 232 NEAG~Gsa~~a~a~a~~~hP~~QGl~~~~~vFiDTiiVCt~TalvIl~tG~~~~~~~~~g~~l~~~Af~~~~g~~g~~~v 311 (416)
T PF01235_consen 232 NEAGLGSAPIAHAAAETDHPVRQGLVQMFEVFIDTIIVCTITALVILVTGVWSWGSGLEGAALTQAAFSTVLGSWGPYFV 311 (416)
T ss_pred CCCCCChhHHHHHHhcCCCcHHHeeeeeehHhHHHHHHHHHHHHHhhccCCCCCCCcchHHHHHHHHHHHhhhhhHHHHH
Confidence 35788888999999999876656665555555556666666555433322211 1122 34566665557888999
Q ss_pred HHHHHHHHHHHHHHHhhchhHHHHHHH
Q 011037 358 SVCALKGMTTSLLVGSLGQARYTTQIA 384 (495)
Q Consensus 358 ~~~~~~s~~~~~~~~~~~~sR~l~~~a 384 (495)
.+++++-.+++.+++.+.+-|.+.-+.
T Consensus 312 ~i~l~lFafTTilg~~~yge~~~~yl~ 338 (416)
T PF01235_consen 312 AIALFLFAFTTILGWYYYGEKCAEYLF 338 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999998888776664
No 53
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=99.21 E-value=1.6e-08 Score=100.79 Aligned_cols=286 Identities=15% Similarity=0.158 Sum_probs=180.8
Q ss_pred ccCCHhHHHHHHhhhhhhhhhhhccHHhHHhccChHHHHHHHHHHHHHHHHHHHHhhhhhcccc-------ccchhHhHH
Q 011037 77 KCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPV-------AGGSFSFLR 149 (495)
Q Consensus 77 r~l~~~~~~~l~~~~~ig~g~~~~~~~~~~~~~G~~~~~~~li~~~~~~~~~~~~ael~s~~P~-------~Gg~y~~~~ 149 (495)
++++.++.++..++..+|+|-......++.. +||+++..+.+++++...+.++-.-++.++-+ .||...|.+
T Consensus 45 g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~-GGpGAvFWMWI~allGm~~~~~e~~L~~~yr~~~~~g~~~GGP~yyi~ 123 (425)
T TIGR00835 45 GGVSSFQALFTSLAARVGIGNIVGVATAIAI-GGPGAVFWMWVTAFIGMATKFVESTLAQKYRERDADGVFRGGPMYYIK 123 (425)
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHHHHh-cCCCchHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCEecChHHHHH
Confidence 5699999999999999999965666666666 99986555555666666666666666665552 234448888
Q ss_pred HHhc-hhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhh
Q 011037 150 VELG-DFVAYIAAGNILLEA-VVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSG 227 (495)
Q Consensus 150 ~~~g-~~~g~~~g~~~~l~~-~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 227 (495)
+.++ |++|.+.+.. .+.+ .......+...++.+...++ .| ..+.++++.++..++..-|
T Consensus 124 ~gl~~k~lg~lfa~~-~i~~f~~~~~~Q~nsi~~~~~~~~~-------------~~-----~~v~~i~l~~l~~~vi~GG 184 (425)
T TIGR00835 124 KGLGMRWLAVLFAVF-LIASFGIGNMVQANAIASALSNAFN-------------VP-----KLVTGIVLTVLTALIIFGG 184 (425)
T ss_pred HHhCccHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHcC-------------Cc-----HHHHHHHHHHHHHHHHhcC
Confidence 8776 7777777766 4444 34456666666666664332 11 3356667777777777779
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhheeccccCCCC---------CCCCC----Chhh------HHHHHHHHHHH---hh
Q 011037 228 TRRSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLD---------PFLPY----GTEG------VFEAAAVVYWS---YT 285 (495)
Q Consensus 228 ~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~---------~~~~~----~~~~------~~~~~~~~~~~---f~ 285 (495)
+|..+++...+..++.+..+...+... ..+.+|.. .|.+. |..| +-.|+.=..|+ =.
T Consensus 185 ik~Ia~v~~~lvP~m~~~Y~~~~l~ii-~~n~~~lp~~~~~If~~AF~~~a~~GG~~G~~v~~ai~~Gv~Rg~fSNEAG~ 263 (425)
T TIGR00835 185 LKRIAKISSVVVPFMALLYVIMALYII-IMNIEQLPAVISLIFRSAFGGDAAAGGFAGSTVAQAIMIGVKRGLFSNEAGM 263 (425)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHHhhHHHHhcccccc
Confidence 999999999998888776544443222 22333322 12222 1222 11223333343 35
Q ss_pred chhHHHHhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcccccc-c-cccHH-HHHHHHhCchHHHHHHHHHHH
Q 011037 286 GFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEI-D-MNAAY-SIAFRQIGMNWAKYLVSVCAL 362 (495)
Q Consensus 286 G~e~~~~~a~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~-~-~~~p~-~~~~~~~~~~~~~~~~~~~~~ 362 (495)
|....+|.+.|++||.|.--.+++-..+-+.+...+..+.+.....+++. . +...+ ..+++..-+.+...++.+.++
T Consensus 264 Gsa~~a~a~a~~~hP~~QGl~~~~~vfiDTivvCt~Talvil~tg~~~~~~~~~g~~lt~~af~~~~g~~g~~~v~i~~~ 343 (425)
T TIGR00835 264 GSAPIAAAAAQVSHPVRQGLVQMLGVFIDTMIVCTATALVILLSGVWNNGEGLSGAQLTQQALSYGLGSFGAVFVAVALF 343 (425)
T ss_pred CcHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCCCCCcHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 77888888999999987655555555444555555555554443333311 1 12233 344665445677889999999
Q ss_pred HHHHHHHHHHhhchhHHHHHH
Q 011037 363 KGMTTSLLVGSLGQARYTTQI 383 (495)
Q Consensus 363 ~s~~~~~~~~~~~~sR~l~~~ 383 (495)
+-.+++.+++.+.+-+.+.-+
T Consensus 344 lFaftTii~~~yyge~~~~yl 364 (425)
T TIGR00835 344 LFAFSTIIGWYYYGEKNAEFL 364 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 999999999988887777665
No 54
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=99.20 E-value=2.1e-08 Score=98.27 Aligned_cols=291 Identities=17% Similarity=0.187 Sum_probs=203.4
Q ss_pred cccccCCHhHHHHHHhhhhhhhhhhhccHHhHHhccChHHHHHHHHHHHHHHHHHHHHhhhhhcccc-------ccchhH
Q 011037 74 PLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPV-------AGGSFS 146 (495)
Q Consensus 74 ~l~r~l~~~~~~~l~~~~~ig~g~~~~~~~~~~~~~G~~~~~~~li~~~~~~~~~~~~ael~s~~P~-------~Gg~y~ 146 (495)
+.++.++.++.++.+++..+|+|-......++.. +||+++..+.+.+++...+.++=+-|+..|.+ .||.-+
T Consensus 58 ~~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~-GGPGAvFWMWi~Al~Gmat~f~E~~La~~Yr~kd~~G~~~GGP~y 136 (452)
T COG1115 58 AGKGGVSSFQALMTSLAARVGTGNIAGVATAIAL-GGPGAVFWMWIVALFGMATKFAESTLAQKYRVKDKDGEYRGGPAY 136 (452)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHHHHc-CCCccHHHHHHHHHHHHHHHHHHHHHHhheeEeCCCCCCcCChHH
Confidence 3467899999999999999999999998888888 99996666666777888888888888888772 478999
Q ss_pred hHHHHhc-hhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHH
Q 011037 147 FLRVELG-DFVAYIAAGNILLEAV-VGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIA 224 (495)
Q Consensus 147 ~~~~~~g-~~~g~~~g~~~~l~~~-~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 224 (495)
|.++.+| |++|.+.+....+.+- ..+...+.++++.+.+.++ .| ..+.++++.++..++-
T Consensus 137 Yi~kGl~~r~l~v~FA~~li~afg~i~n~vQ~NsIa~a~~~af~-------------~~-----~~~~gi~la~l~~~VI 198 (452)
T COG1115 137 YIEKGLGMRWLAVLFAFALIAAFGFIGNGVQSNSIASALANAFG-------------IP-----PLVTGIVLALLVALVI 198 (452)
T ss_pred HHHhhcCCcHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHhcC-------------Cc-----HHHHHHHHHHHHHHHH
Confidence 9999998 6677777766666665 5778888888888888766 11 3467788888888888
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHhheeccccCCCC---------CCCCC----Chh------hHHHHHHHHHHH--
Q 011037 225 MSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLD---------PFLPY----GTE------GVFEAAAVVYWS-- 283 (495)
Q Consensus 225 ~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~---------~~~~~----~~~------~~~~~~~~~~~~-- 283 (495)
..|+|..+++......++-+.-++..+..+. .+.++.+ .|.+. |+. .+..++.=..|+
T Consensus 199 ~GGi~rIa~v~~~vVPfMA~~Yi~~~~~Ii~-~n~~~iP~~i~~If~sAF~~~aa~GG~~G~~v~~aI~~Gv~RGlfSNE 277 (452)
T COG1115 199 FGGIKRIAKVSSKVVPFMAILYVLVALVIIV-LNISQIPAVIALIFSSAFGPKAAAGGFAGYTVAQAIRNGVKRGLFSNE 277 (452)
T ss_pred HcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHhhhHHHHHHHHHhcCCchhhhhhhhhHHHHHHHHHHHHHHhhccc
Confidence 9999999999998887776654443332222 1111111 11111 111 233444444454
Q ss_pred -hhchhHHHHhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccccc--cccHH-HHHHHHhCchHHHHHHHH
Q 011037 284 -YTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEID--MNAAY-SIAFRQIGMNWAKYLVSV 359 (495)
Q Consensus 284 -f~G~e~~~~~a~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~--~~~p~-~~~~~~~~~~~~~~~~~~ 359 (495)
=.|....++.+.+++||.|.--..++...+-+.++.....+.+.....++... +...+ ..+++..-+++...++.+
T Consensus 278 AGmGsap~aaAaA~~~hPv~QGlv~~~gvfiDT~iVCt~Ta~iIL~sg~~~~~~~~~G~~ltq~A~~~~~g~~G~~fv~i 357 (452)
T COG1115 278 AGMGSAPIAAAAAKTDHPVKQGLVQMLGVFIDTLVVCTATAFIILLSGAWNSGGGLSGAALTQAAFSSHLGSWGSYFVAI 357 (452)
T ss_pred ccCCcchhHHHhhcCCCcHHHhHHHHhhhhhhhhHHhhHHHHHHHHcCCcccCCCCchHHHHHHHHHHhcCccHHHHHHH
Confidence 34677778888888999776544544444445555555555555544443332 22333 445677666799999999
Q ss_pred HHHHHHHHHHHHHhhchhHHHHHHH
Q 011037 360 CALKGMTTSLLVGSLGQARYTTQIA 384 (495)
Q Consensus 360 ~~~~s~~~~~~~~~~~~sR~l~~~a 384 (495)
.+++-.+++.+++.+.+=|.+.-+-
T Consensus 358 ~l~lFafTTIlg~yyyge~~~~fl~ 382 (452)
T COG1115 358 ALFLFAFTTILGWYYYGEKNIEFLF 382 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999998888877665
No 55
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.19 E-value=1e-08 Score=103.09 Aligned_cols=280 Identities=14% Similarity=0.184 Sum_probs=187.4
Q ss_pred cccccCCHhHHHHHHhhhhhhhhhhhccHHhHHhccChH-HHHHHHHHHHHHHHHHHHHhhhhhccccccc-----hhHh
Q 011037 74 PLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVAGG-----SFSF 147 (495)
Q Consensus 74 ~l~r~l~~~~~~~l~~~~~ig~g~~~~~~~~~~~~~G~~-~~~~~li~~~~~~~~~~~~ael~s~~P~~Gg-----~y~~ 147 (495)
..+|+-++++..+-.++.++|.|+...| ++..+ .|.. .+...++.+++.+.++..+.+.-...+.-.| +-+-
T Consensus 33 ~~~~~~s~~~a~~~~i~~~~G~gvLsLP-~A~~~-lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl 110 (437)
T KOG1303|consen 33 TPSRGGSWWQAAFHIINALIGAGVLSLP-YALAQ-LGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDL 110 (437)
T ss_pred ccCCCCcceehhhheehhhhhhhhhhhH-HHHHh-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHH
Confidence 3478899999999999999999998877 56666 7765 5888889999999999888888888887777 6677
Q ss_pred HHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHH-hh
Q 011037 148 LRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIA-MS 226 (495)
Q Consensus 148 ~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~ 226 (495)
++++||++.-.++++...+.....+..+....++.+..++.+...+.- ... .. .+.+++.+++.... +.
T Consensus 111 ~~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~-----~l~-~~----~f~iif~~i~~~~s~lp 180 (437)
T KOG1303|consen 111 GQAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDN-----SLD-KQ----YFIIIFGLIVLPLSQLP 180 (437)
T ss_pred HHHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-----ccc-ce----ehhhhHHHHHHHHHHCC
Confidence 789999888778888887777777777888888888888773222210 000 11 11122222222222 23
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhheeccccC-CC-CCCCCCChhhH-HHHHHHHHHHhhchhHHHHhhhhhcCCCCc
Q 011037 227 GTRRSSWLNWISSIVSSCVIVFVIIVGFVHGKTT-NL-DPFLPYGTEGV-FEAAAVVYWSYTGFDMVATMAEETKKPSRD 303 (495)
Q Consensus 227 g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~-~~-~~~~~~~~~~~-~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~ 303 (495)
......++.....+..+.......+.+...+-.. +. .+....+.... +.++....|+|.|.-.....-..+|+|+|
T Consensus 181 ~~~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~f~a~g~iaFaf~gH~v~peIq~tMk~p~~- 259 (437)
T KOG1303|consen 181 NFHSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLGTIPTVFTALGIIAFAYGGHAVLPEIQHTMKSPPK- 259 (437)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccCCCCcchhhhhhheeeeecCCeeeeehHhhcCCchh-
Confidence 3344444444444444443334444444433111 11 11111111222 67888899999999999999999999988
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhccccccccccHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHHH
Q 011037 304 IPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQI-GMNWAKYLVSVCALKGMTTSLLVG 372 (495)
Q Consensus 304 ~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~~~ 372 (495)
++|+.+.+..++.++|+.+++.-+...+++..+ ++.... ...|.....++.+.+-.+++..-+
T Consensus 260 f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~------~il~s~~~p~~~~~~ani~i~~h~i~s~~i~ 323 (437)
T KOG1303|consen 260 FKKALLISYIIVTFLYFPVAIIGYWAFGDSVPD------NILLSLQPPTWLIALANILIVLHLIGSYQIY 323 (437)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhhccccch------hhhhcccCchhHHHHHHHHHHHHHhhhhhhh
Confidence 999999999999999999999877766654321 122233 356777777787777776665443
No 56
>PTZ00206 amino acid transporter; Provisional
Probab=99.16 E-value=1.8e-07 Score=96.41 Aligned_cols=244 Identities=13% Similarity=0.108 Sum_probs=152.6
Q ss_pred CHhHHHHHHhhhhhhhhhhhccHHhHHhccChH-HHHHHHHHHHHHHHHHHHHhhhhhccccccchhHhHHHHhchhHHH
Q 011037 80 TWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAY 158 (495)
Q Consensus 80 ~~~~~~~l~~~~~ig~g~~~~~~~~~~~~~G~~-~~~~~li~~~~~~~~~~~~ael~s~~P~~Gg~y~~~~~~~g~~~g~ 158 (495)
|..+..+-.+.+++|+|++..|.. ... +|-. .++..++.+++.......+.+.+.+- +.-.+.+-.++.+||+..+
T Consensus 61 g~~~s~fnL~~~~iGaGILsLP~A-f~~-~G~v~giillil~a~ls~ys~~lL~~~~~~~-~~~sY~~la~~~~G~~g~~ 137 (467)
T PTZ00206 61 GIAASAFNIASSTVGAGIVGLPSA-ANS-SGLVMAMIYLIIITAMTIFSIYALGVAADKT-NIRTYEGVARVLLGPWGSY 137 (467)
T ss_pred cHHHHHHHHHHHHHhHHHHHHHHH-HHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHhCHHHHH
Confidence 445666666677889999887664 444 7765 66666666777766666777766653 3335666667889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHH-HHHHHHHHHHHHhhhhhhhHHHHHH
Q 011037 159 IAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPV-AVLILLVCNGIAMSGTRRSSWLNWI 237 (495)
Q Consensus 159 ~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~g~~~~~~~~~~ 237 (495)
++....++.....+..+....++.+...+......++- .........+ .+.+++.+-+...+.++..+++..+
T Consensus 138 ~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~------~~~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S~i 211 (467)
T PTZ00206 138 YVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFL------KQKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVSTI 211 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchh------hhccCcEEeeeehhhhHhhhcccccchHHHHHHHHH
Confidence 99999988888888888888898888776522111110 0000001111 1111122222334556666666544
Q ss_pred HHHHHHHHHHHHHHhheeccccCCCC-----C-------CCCCChhhHHHHHHHHHHHhhchhHHHHhhhhhcCCC-Cch
Q 011037 238 SSIVSSCVIVFVIIVGFVHGKTTNLD-----P-------FLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPS-RDI 304 (495)
Q Consensus 238 ~~~~~l~~~~~~~i~~~~~~~~~~~~-----~-------~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~-k~~ 304 (495)
.....+...+.+++.......+++.. . .++ .......++....|+|.+.......-.|+|||. |++
T Consensus 212 ~~~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~-~~~~~~~algi~~faF~~h~~~~~i~~~M~~~t~~~~ 290 (467)
T PTZ00206 212 AVSFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFN-SGNRAIEGLGVFIFAYVFQITAYEVYMDMTNRSVGKF 290 (467)
T ss_pred HHHHHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEec-CchHHHhhhhHHHhhhhhhhhhHHHHHhhcccchhHH
Confidence 43333333322222222221111111 0 111 123577889999999999999999999999974 678
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 011037 305 PIGLVGSMCMITAVYCLMALALTMMVKYT 333 (495)
Q Consensus 305 p~ai~~~~~~~~~~y~~~~~~~~~~~~~~ 333 (495)
.+.+..+..++.++|.+..+.-+...+++
T Consensus 291 ~~v~~~s~~i~~~lY~~~G~~GYl~fG~~ 319 (467)
T PTZ00206 291 VLASTIAMGMCFTMYVLTAFFGYMDFGRN 319 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccc
Confidence 89999999999999999988876656543
No 57
>PLN03074 auxin influx permease; Provisional
Probab=99.13 E-value=9.8e-08 Score=98.09 Aligned_cols=237 Identities=11% Similarity=0.103 Sum_probs=130.0
Q ss_pred ccCCHhHHHHHHhhhhhhhhhhhccHHhHHhccChH-HHHHHHHHHHHHHHHHHHHh----hhhhccccccch-------
Q 011037 77 KCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYT----EFAVEIPVAGGS------- 144 (495)
Q Consensus 77 r~l~~~~~~~l~~~~~ig~g~~~~~~~~~~~~~G~~-~~~~~li~~~~~~~~~~~~a----el~s~~P~~Gg~------- 144 (495)
.+-+..+..+-.+.+.+|.|++..|. +..+ +|-. .++..++.+++..-++..+. |...+.|+.+-.
T Consensus 44 ~~~s~~~~~~~l~~~~vG~GILaLP~-Af~~-~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~ 121 (473)
T PLN03074 44 HGGSVYDAWFSCASNQVAQVLLTLPY-SFSQ-LGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQ 121 (473)
T ss_pred CCchHHHHHHHHHHHHHhHHHHhHHH-HHHH-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHH
Confidence 34555555555777888999988665 4555 7765 66677777777666666554 556666653321
Q ss_pred -hHhHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHH
Q 011037 145 -FSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGI 223 (495)
Q Consensus 145 -y~~~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 223 (495)
.+-..+.+||.++.+......+.....+.......++.+..+.+ ...... +..++.++.+.+.
T Consensus 122 ~~e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~~------------~~~~~~-~~~i~~~v~~~~~--- 185 (473)
T PLN03074 122 WFEVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYIND------------NLDKRT-WTYIFGACCATTV--- 185 (473)
T ss_pred HHHHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhCC------------CcCCCe-EEeehHHHHHHHH---
Confidence 22234567988877775444444333333333332222222111 011110 1112222222222
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHhheeccccCCCCCCCCCChhhHHHHHHHHHHHhhchhHHHHhhhhhcCCCCc
Q 011037 224 AMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRD 303 (495)
Q Consensus 224 ~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~ 303 (495)
-+...|...++..+.....+...+.+.+......+......-.+.++..++.++...+|+|.|.-....+-.|||||+|
T Consensus 186 ~i~sl~~l~~~S~ig~~~tl~~av~i~i~~i~~~~~~~~~~~~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M~~P~~- 264 (473)
T PLN03074 186 FIPSFHNYRIWSFLGLLMTTYTAWYMTIAALSHGQVEGVKHSGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK- 264 (473)
T ss_pred HccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchhHHHHHHHHHHHHHHhcccccHHHHHHhccChhc-
Confidence 2333454554443333333322222233233232222121111234556777777889999999999999999999954
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 011037 304 IPIGLVGSMCMITAVYCLMALALTMMVKY 332 (495)
Q Consensus 304 ~p~ai~~~~~~~~~~y~~~~~~~~~~~~~ 332 (495)
.++....+...+..+|+...+..+...++
T Consensus 265 F~~~~~l~~~~v~~~y~~~~~~gY~~fG~ 293 (473)
T PLN03074 265 FKYIYLAATLYVLTLTLPSAAAVYWAFGD 293 (473)
T ss_pred ccchHHHHHHHHHHHHHHHHHeeeeeech
Confidence 88888888888888888876655544544
No 58
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.06 E-value=1.3e-07 Score=93.88 Aligned_cols=282 Identities=11% Similarity=0.089 Sum_probs=178.9
Q ss_pred ccCCHhHHHHHHhhhhhhhhhhhccHHhHHhccChH--HHHHHHHHHHHHHH---HHHHHhhhhhccccc----------
Q 011037 77 KCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA--IVLSYLASGLSALL---SAFCYTEFAVEIPVA---------- 141 (495)
Q Consensus 77 r~l~~~~~~~l~~~~~ig~g~~~~~~~~~~~~~G~~--~~~~~li~~~~~~~---~~~~~ael~s~~P~~---------- 141 (495)
+..+..+.+.=-+-+++|+|++..|. +... +|-. .+...+++.+...| ...+.-+++++.-++
T Consensus 45 ~~~s~~~tl~hl~k~~iGtG~l~lP~-AFk~-sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~ 122 (449)
T KOG1304|consen 45 HPTSATQTLIHLLKGSIGTGILSLPL-AFKN-SGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAES 122 (449)
T ss_pred CCCchHHHHHHHHHhhhccccccChH-HHHh-cchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHH
Confidence 44777777777777788999977765 5555 7754 33445555554444 455556666664111
Q ss_pred --cchhHhHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHH
Q 011037 142 --GGSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLV 219 (495)
Q Consensus 142 --Gg~y~~~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (495)
.+.|.| .|.+||+..+++-....+.+...+..+....++-+.+..+......+ ...++..+.+..
T Consensus 123 a~~~~~~~-~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~~~~~------------s~~~~i~~~~~~ 189 (449)
T KOG1304|consen 123 AMEGGPGW-LRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHSPGVL------------SVRLYILIQLPP 189 (449)
T ss_pred HHcCCcHH-HHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccCCCCc------------cHHHHHHHHHHH
Confidence 122335 78899999999999999999999988888888888888772111212 122333333333
Q ss_pred HHHHH-hhhhhhhHHHHHHHHHHHHHHHHHHHHhheeccc-cCCCCCCCCCChhhHHHHHHHHHHHhhchhHHHHhhhhh
Q 011037 220 CNGIA-MSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHGK-TTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEET 297 (495)
Q Consensus 220 ~~~i~-~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~ 297 (495)
...+| ++..|...-+..+.-++.++.++++....+.... .++...+ .++.++-..+..++|+|-|...+-.+=+++
T Consensus 190 ~lll~~Ir~Lk~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~~~~~~~~~--~~~~~~~lf~GtaifafEGig~VLPlEn~M 267 (449)
T KOG1304|consen 190 LLLLNLIRNLKILSPFSLFANVFILVGLAIIMYYLVQDLPPTSDLPAV--TGWSGLPLFFGTAIFAFEGIGMVLPLENSM 267 (449)
T ss_pred HHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHhccCCccccccc--cchhhhHHHHHHHHHHhccceEEEehhhcc
Confidence 33333 3556666666655555555555555544333222 2222222 236777788888999999999999999999
Q ss_pred cCCCCchh---HHHHHHHHHHHHHHHHHHHHHHHhccccccccccHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhh
Q 011037 298 KKPSRDIP---IGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSL 374 (495)
Q Consensus 298 k~p~k~~p---~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 374 (495)
|+|++ +| +.+-.++.++.++|...-+.-+...++|-.++-. -+....++...+-+...++++-+.--.++
T Consensus 268 k~P~~-F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sIT------LNLP~~~l~~~Vkl~~ai~I~ls~pLQ~y 340 (449)
T KOG1304|consen 268 KKPQK-FPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSIT------LNLPQEILSQTVKLLLAIAIFLTYPLQFY 340 (449)
T ss_pred cChhh-cCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEE------ecCCccHHHHHHHHHHHHHHHHcCchhhh
Confidence 99954 77 9999999999999999888766656554322110 01222445555556666666555555566
Q ss_pred chhHHHHH
Q 011037 375 GQARYTTQ 382 (495)
Q Consensus 375 ~~sR~l~~ 382 (495)
..-++++.
T Consensus 341 v~~eIi~~ 348 (449)
T KOG1304|consen 341 VPIEIIEP 348 (449)
T ss_pred hhHHHHHH
Confidence 66666654
No 59
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=98.95 E-value=2.8e-06 Score=80.07 Aligned_cols=265 Identities=15% Similarity=0.097 Sum_probs=166.0
Q ss_pred HHHHhhhhhhhhhhhccHHhHHhccCh---HHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHhHHHHhchhHHHHHH
Q 011037 85 TWLCFGSVVGSGIFVITGQEAKKHAGP---AIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAA 161 (495)
Q Consensus 85 ~~l~~~~~ig~g~~~~~~~~~~~~~G~---~~~~~~li~~~~~~~~~~~~ael~s~~P~~Gg~y~~~~~~~g~~~g~~~g 161 (495)
.+..++.++|.|. .+|+-..+..|+ .+.++.++++++....+....++++++- +...-.+.++.+||+++.+.-
T Consensus 9 ~f~~ig~~vGAGf--AsGqEi~QFF~~~G~~s~~gIivs~vlf~~~g~vim~ig~~f~-a~~y~~~~~~v~~~~~~ki~d 85 (349)
T COG3949 9 AFAFIGTVVGAGF--ASGQEIMQFFGKYGVYSILGIILSTVLFTLSGAVIMTIGKKFN-ATSYREILKYVSGPKFAKIID 85 (349)
T ss_pred HHHHHHHhhcccc--cchHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhc-ccchHHHHHHHhhHHHHHHHH
Confidence 3445567778773 344444444554 3899999999999999999999999995 455888999999999998887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhh-hhhhHHHHHHHHH
Q 011037 162 GNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSG-TRRSSWLNWISSI 240 (495)
Q Consensus 162 ~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g-~~~~~~~~~~~~~ 240 (495)
....+.-...+.....+.+..+.+.++ +| .++-+++++.+......++ ++..-+++.+...
T Consensus 86 ~~iif~lf~~~vVM~AGags~~~e~~~-------------lP-----~wiGali~i~~v~i~lfl~~vegi~tvn~iI~P 147 (349)
T COG3949 86 IIIIFFLFSTAVVMLAGAGSLLEEMFG-------------LP-----YWIGALIIILLVLILLFLGRVEGIITVNGIITP 147 (349)
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHhC-------------cc-----HHHHHHHHHHHHHHHHHHhcccceeeeheeHHH
Confidence 665555444444444455557777665 22 1133355556666666666 7777777777777
Q ss_pred HHHHHHHHHHHhheeccccCCCC---CCCCCChhhHHHHHHHHHHHhhchhHHHHhhhhhcCCCCchhHHHHHHHHHHHH
Q 011037 241 VSSCVIVFVIIVGFVHGKTTNLD---PFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITA 317 (495)
Q Consensus 241 ~~l~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~~p~ai~~~~~~~~~ 317 (495)
+.++.+..+.....+ .+.+|.. .....+|.....+ ..+.=..........+++|+|++ |+..++-..+-++.++
T Consensus 148 ~LIi~l~~v~~~~~f-~~~~~~a~~~~~~~~~W~~~~~~-Y~alNi~~~~avLv~lg~~~~~~-~~~~~g~l~gglIlgv 224 (349)
T COG3949 148 FLIIILVLVTLSFQF-TNLGNAAQIVLTKQGNWKASAVG-YGALNILVAVAVLVPLGGRMESR-KVSGIGGLIGGLILGV 224 (349)
T ss_pred HHHHHHHHHHHHHHH-hhccchhhhcCCcCCChHHHHHh-hhhHHHHhHhHhhhhhccccccc-chhhhhhhhhhHHHHH
Confidence 666654333332222 1111111 1112234422221 11112233445567778999996 6677888888888888
Q ss_pred HHHHHHHHHHHhccccccccccHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhc
Q 011037 318 VYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLG 375 (495)
Q Consensus 318 ~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 375 (495)
+..+.+.......| +-.+.+-|..++.++.+ +....++.+.+......+..+.+++
T Consensus 225 l~~l~nlsLi~~~~-~v~~~dIP~l~i~~~~~-~~i~lvm~vIi~~~IytT~vg~iy~ 280 (349)
T COG3949 225 LLFLINLSLIALYD-KVVNYDIPLLTIAKNFS-PLIGLVMSVIIWLEIYTTTVGLIYG 280 (349)
T ss_pred HHHHHHHHHHhhcc-hhhccCCcHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777665444 23344569999999887 5555666666666666666665554
No 60
>PRK11375 allantoin permease; Provisional
Probab=98.94 E-value=4.4e-06 Score=86.40 Aligned_cols=309 Identities=12% Similarity=-0.013 Sum_probs=154.7
Q ss_pred ccccccCCHhHHHHHHhhhhhhhhhhhccHHhHHhccCh--H-HHHHHHHHHHHHHHHHHHHhhhhhccccccchhHhHH
Q 011037 73 QPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGP--A-IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLR 149 (495)
Q Consensus 73 ~~l~r~l~~~~~~~l~~~~~ig~g~~~~~~~~~~~~~G~--~-~~~~~li~~~~~~~~~~~~ael~s~~P~~Gg~y~~~~ 149 (495)
++.+|+.++++.+.+=++.......+...+..+. .|- . ++++.+++.++........+..+.++.. +.....|
T Consensus 21 p~~~Rt~~~~~~~~~W~g~~~~i~~~~~~g~~l~--~GLs~~~ai~ai~lG~~i~~~~~~l~g~~G~~~Gl--~~~v~sR 96 (484)
T PRK11375 21 TQSQRTWKTFNYFTLWMGSVHNVPNYVMVGGFFI--LGLSTFSIMLAIILSAFFIAAVMVLNGAAGSKYGV--PFAMILR 96 (484)
T ss_pred CccccCCcHHHHHHHHHHHhccHHHHHHHHHHHH--ccchHHHHHHHHHHHHHHHHHHHHHhcccccccCC--ChhHhHH
Confidence 3457889999998887776654444322232332 333 2 5555555555555444444444444332 4677888
Q ss_pred HHhchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccC--CCCCchhHHHHHHHHHHHHHHhh
Q 011037 150 VELGDFVAYIAAGNIL-LEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFA--DGFNLLDPVAVLILLVCNGIAMS 226 (495)
Q Consensus 150 ~~~g~~~g~~~g~~~~-l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~ 226 (495)
..||.+-+.+.+.... +..+...+......++.+...+....+ .+....+..+ .......+..+++.++.+.+.+.
T Consensus 97 ~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~-~~~~~~~~~~~~g~~~~~~i~~~i~~~l~~~~~~~ 175 (484)
T PRK11375 97 ASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWP-GFLTLGGDFTLLGLSLPGLITFLIFWLVNVGIGFG 175 (484)
T ss_pred HHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cccccccccccCCCcHHHHHHHHHHHHHHHHHHHc
Confidence 8999887777776663 455566666666666666654431111 1100000011 00101123344555666677788
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhheeccccCCCCCCCCC-------ChhhHHHHHHHHHHHhh-chhHHHHhhhhhc
Q 011037 227 GTRRSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLDPFLPY-------GTEGVFEAAAVVYWSYT-GFDMVATMAEETK 298 (495)
Q Consensus 227 g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~f~-G~e~~~~~a~E~k 298 (495)
|.|...+++.+...+.++.++.+.+..+...+.+......+. ....+..++...+-++. +.-..+.++...|
T Consensus 176 g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~vig~~~~~~~~~~D~tRy~k 255 (484)
T PRK11375 176 GGKVLNKFTAILNPCIYIVFGGMAIWAISLVGIGPIFDYIPSGIQKAENSGFLFLVVINAVVAVWAAPAVSASDFTQNAH 255 (484)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhccCcccccCCcchHHHHHHHHHHHHHHHHHHHccccchhcccC
Confidence 999999999888877766555554443333322221111111 12334444332222333 3345667777788
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHH-HhccccccccccHHHHHHHHhCchHHHHHHHHHHHHHHHHHHH-HHhhch
Q 011037 299 KPSRDIPIGLVGSMCMITAVYCLMALALT-MMVKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLL-VGSLGQ 376 (495)
Q Consensus 299 ~p~k~~p~ai~~~~~~~~~~y~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~-~~~~~~ 376 (495)
+++.. -++...+..+...+..+..+... .....-.....+| .++....+...+..+..+.++++..+... ...+++
T Consensus 256 ~~~~~-~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~~dp-~~i~~~~~~~~~~~~a~l~~v~a~~~tN~~~N~ys~ 333 (484)
T PRK11375 256 SFRAQ-ALGQTLGLVVAYILFAVASVCIIAGASIHYGADTWNV-LDIVQRWDSLFASFFAVLVILMTTISTNATGNIIPA 333 (484)
T ss_pred Chhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCH-HHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccH
Confidence 86443 35555555554444322222111 1110000011234 33333334444455555666666666644 456665
Q ss_pred hHHHHHHHhcCCCchhh
Q 011037 377 ARYTTQIARAHMIPPWH 393 (495)
Q Consensus 377 sR~l~~~ardg~lP~~~ 393 (495)
+--+ .+.+||++
T Consensus 334 ~~~l-----~~l~pk~i 345 (484)
T PRK11375 334 GYQI-----AALAPTKL 345 (484)
T ss_pred HHHH-----HHhCcCcc
Confidence 5444 44578654
No 61
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=98.63 E-value=4.1e-09 Score=107.45 Aligned_cols=289 Identities=12% Similarity=0.160 Sum_probs=176.7
Q ss_pred ccCCHhHHHHHHhhhhhhhhhhhccHHhHHhccChH-HHHHHHHHHHHHHHHHHHHhhhhhccc---cccchhHhHHHHh
Q 011037 77 KCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIP---VAGGSFSFLRVEL 152 (495)
Q Consensus 77 r~l~~~~~~~l~~~~~ig~g~~~~~~~~~~~~~G~~-~~~~~li~~~~~~~~~~~~ael~s~~P---~~Gg~y~~~~~~~ 152 (495)
|+-|.++..+..++.++|.|++..|... .+ +|.. .++..++.+++...+...+.|.....+ +.-...+-.++.+
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af-~~-~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~ 78 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAF-AQ-SGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAF 78 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHH-HH-hhhhhhhHHHHHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence 4668899999999999999998877654 44 6765 777888888888999999999998876 3333444457899
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHh-hhhhhh
Q 011037 153 GDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAM-SGTRRS 231 (495)
Q Consensus 153 g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~g~~~~ 231 (495)
||+.++++.....+........+....++.+...++...++ . ... ...+.++..+++.-+.. +..+..
T Consensus 79 G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~-~-----~~~-----~~~~~~i~~~i~~pls~~~~l~~l 147 (409)
T PF01490_consen 79 GPKGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGD-L-----FIS-----RYVWIIIFALIVLPLSFLKNLKSL 147 (409)
T ss_pred cccccccccchheeccccccceeEEEeeeeeeccccccccc-c-----ccc-----ccccccccccccccccccchhhHH
Confidence 99999988888877777766766666777777666521111 0 001 11111222222222221 223333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhheec---cccCCCC---CCCCCChhhHHHHHHHHHHHhhchhHHHHhhhhhcCCCC--c
Q 011037 232 SWLNWISSIVSSCVIVFVIIVGFVH---GKTTNLD---PFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSR--D 303 (495)
Q Consensus 232 ~~~~~~~~~~~l~~~~~~~i~~~~~---~~~~~~~---~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k--~ 303 (495)
..+..+.....+.. +.+.+..... .+..+.. .+....+.++..++....|+|.+......+.+|+|+|+| +
T Consensus 148 ~~~s~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~ 226 (409)
T PF01490_consen 148 RYLSILGLFSIFYF-IVIVVIYIISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFKK 226 (409)
T ss_pred HHHhhhhhhcccee-eeeecceeeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCccccc
Confidence 32222222221111 0111111111 1111111 112344678899999999999999999999999999875 4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhccccccccccHHHHHHHHhCch-HHHHHHHHHHHHHHHHHHHHHhhchhHHHHH
Q 011037 304 IPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMN-WAKYLVSVCALKGMTTSLLVGSLGQARYTTQ 382 (495)
Q Consensus 304 ~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~~ 382 (495)
+.|....+..++.++|++..+......+++ .+ + .+..++... +...+..+...+..+.+.--..+...+.+..
T Consensus 227 ~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~-~~--~---~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~ 300 (409)
T PF01490_consen 227 MKKVLSISMIICFIIYLLFGIFGYLAFGDS-VQ--G---NILLNLPNDDVLIIIARILLVISLLLSYPLQLFPARNSLEN 300 (409)
T ss_pred cceeeeehhhhhhHHhhhhhhcccceeeee-ec--c---hhhhcCCCcccccccccccchhhhhhccccccchhHhhhhh
Confidence 569999999999999999988876655443 11 1 233333322 3445555555555555554455555555555
Q ss_pred HHh
Q 011037 383 IAR 385 (495)
Q Consensus 383 ~ar 385 (495)
.-+
T Consensus 301 ~~~ 303 (409)
T PF01490_consen 301 LLF 303 (409)
T ss_pred hee
Confidence 543
No 62
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=98.52 E-value=0.00014 Score=72.95 Aligned_cols=314 Identities=12% Similarity=0.050 Sum_probs=160.5
Q ss_pred CccccccCCHhHHHHHHhhhhhhhhhhhccHHhHHhccChH-HHHHHHHHHHHHHHHHHHHhhhhhccccccchhHhHHH
Q 011037 72 KQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRV 150 (495)
Q Consensus 72 ~~~l~r~l~~~~~~~l~~~~~ig~g~~~~~~~~~~~~~G~~-~~~~~li~~~~~~~~~~~~ael~s~~P~~Gg~y~~~~~ 150 (495)
.++.+|+.++++.+.+=.+...-.+.+...+......-++. ++++.+++-++.......-+..++++-.+ .-.-.|.
T Consensus 34 ~~~~~rtWg~~~~~~~W~~~~~nv~~~~~aa~~~~lGLS~~qallai~vG~~iv~i~m~Lng~~G~~~gIp--Fpv~~Ra 111 (497)
T COG1953 34 TPAEQRTWGWWNYFALWLGMVHNVPTYMLAAGLFELGLSPWQALLAILVGNLIVAIFMVLNGHAGSKYGIP--FPVLSRA 111 (497)
T ss_pred CccccCcchHHHHHHHHHHhhccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhccCcccccCCC--chHHHHH
Confidence 34568999999999887777655554444444444423455 77777777777766666665555555322 3445677
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccc--cccCCCCCchhHHHHHHHHHHHHHHhhhh
Q 011037 151 ELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKV--DCFADGFNLLDPVAVLILLVCNGIAMSGT 228 (495)
Q Consensus 151 ~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 228 (495)
.||-+.+-.-...=.+.-+.....++...+..+..++....+. ++... .....-.....+..+++-++-..+...|.
T Consensus 112 SFGi~Ga~~p~l~R~i~A~~WyGvqty~Gg~av~llL~~i~~~-~~~~~~~~~~lg~tt~~~i~F~ifW~l~~l~~~~g~ 190 (497)
T COG1953 112 SFGIYGANFPALIRAIVAIVWYGVQTYAGGLAVNLLLGSIFPS-LLIPNTLSPLLGLTTLELICFFIFWVLQLLVLFKGM 190 (497)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccc-cccCCccccccCCcHHHHHHHHHHHHHHHHHHhcCH
Confidence 7776655444443334444444555555555555444422222 11110 00111122233444445555556667899
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhheeccccCCCCCCC----CCC---hhhHHHHHHH-HHHHhhchhHHHHhhhhhcCC
Q 011037 229 RRSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLDPFL----PYG---TEGVFEAAAV-VYWSYTGFDMVATMAEETKKP 300 (495)
Q Consensus 229 ~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~-~~~~f~G~e~~~~~a~E~k~p 300 (495)
+...|++.+...+..+..+.+.+....+.+..+..... +.+ +..++.++.. .-+-=+..-..+.++.+.|+|
T Consensus 191 ~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~~~~~~~p~~~~~~~~~~w~~~~~~~~~v~~~Atl~lN~~DFsRfa~s~ 270 (497)
T COG1953 191 ESIRKFETWAGPLVYIAMLGLAIWALVKAGGSSILGELPAGTVSGSNSSWAFLAGIAAWVGFWATLALNIPDFTRFAKSQ 270 (497)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHHhcCCcCccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHhcCCchhhcccCCh
Confidence 99999999999999888888888776655442221111 111 1223222211 111112234456667777776
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHhccccccccc-cHHHHHHHHhCchHHHH-HHHHHHHHHHHHHHHHHhhchhH
Q 011037 301 SRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMN-AAYSIAFRQIGMNWAKY-LVSVCALKGMTTSLLVGSLGQAR 378 (495)
Q Consensus 301 ~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~sR 378 (495)
+ +.-++-.+++.+...++-+..+...... .....+. ..-.++.++........ +..+...++.+++..+.-..++-
T Consensus 271 ~-~~~~gq~~gLPv~~~l~~ligvv~tsa~-~~lyG~~~w~P~di~~~~~~~~~~~fl~~l~~~iati~~Ni~aN~vsp~ 348 (497)
T COG1953 271 K-AQIWGQLVGLPVNFALFSLIGVVVTSAS-YILYGETIWDPLDIVARFLSGFYAAFLAGLTFAVATISTNIAANIVSPG 348 (497)
T ss_pred h-hhhhccchhhhHHHHHHHHHHhhHHHHH-HHhhCcccCCHHHHHHHhccchHHHHHHHHHHHHHHHhhhHHhccCChH
Confidence 3 3334444444444444333333222111 0011111 11245555555454444 66666666666655444333332
Q ss_pred HHHHHHhcCCCchhhh
Q 011037 379 YTTQIARAHMIPPWHN 394 (495)
Q Consensus 379 ~l~~~ardg~lP~~~~ 394 (495)
.-. .+.+||...
T Consensus 349 ~D~----s~l~Pk~in 360 (497)
T COG1953 349 YDL----SALFPKYIN 360 (497)
T ss_pred HHH----HHhcccccc
Confidence 211 135776554
No 63
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=98.50 E-value=0.0012 Score=68.79 Aligned_cols=287 Identities=13% Similarity=0.062 Sum_probs=156.1
Q ss_pred cccCCHhHHHHHHhhhhhhhhhhhccHHhHHhccChH-HHHHH---HHHHHHHHHHHHHHhhhhhccccccchhHhHHHH
Q 011037 76 QKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSY---LASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVE 151 (495)
Q Consensus 76 ~r~l~~~~~~~l~~~~~ig~g~~~~~~~~~~~~~G~~-~~~~~---li~~~~~~~~~~~~ael~s~~P~~Gg~y~~~~~~ 151 (495)
.|+++++-..+-..++.++.+.+......... .|.. .+.+. ....+.....+.-+.++.++.. .-...+|.++.
T Consensus 40 gr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~-~~T~~e~l~~R 117 (483)
T PRK09442 40 NRSMGGFVLAMTLIATYISASSFIGGPGAAYK-YGLGWVLLAMIQVPTVWLSLGILGKKFAILARKYN-AVTLNDMLRAR 117 (483)
T ss_pred CCCccHHHHHHHHHHHHhhHhHHhCChhHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CccHHHHHHHH
Confidence 68899887777777777765555554433333 4543 22211 1111122223444555566553 34588899999
Q ss_pred hchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhh
Q 011037 152 LGDF-VAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRR 230 (495)
Q Consensus 152 ~g~~-~g~~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~ 230 (495)
+|+. .....+....+..+...+....+.+..++...+ . +. ...+.+..++.+.+...-|.|.
T Consensus 118 yg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~g-i------------~~----~~~iii~~~iv~iYt~~GGl~a 180 (483)
T PRK09442 118 YQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATG-I------------SY----ETGLLIFGITVALYTAFGGFRA 180 (483)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-C------------CH----HHHHHHHHHHHHHHHHhccHHH
Confidence 9854 566666666666666677777777778877665 1 11 1122223333455666678888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhheec-c------------ccCCCCCCCCCC---hhhHHHHHHHHHHHhhchhHHHHhh
Q 011037 231 SSWLNWISSIVSSCVIVFVIIVGFVH-G------------KTTNLDPFLPYG---TEGVFEAAAVVYWSYTGFDMVATMA 294 (495)
Q Consensus 231 ~~~~~~~~~~~~l~~~~~~~i~~~~~-~------------~~~~~~~~~~~~---~~~~~~~~~~~~~~f~G~e~~~~~a 294 (495)
..+...+-.++.++..+++.+..+.. + +++.+.+..+.+ +..+........+...+.....+-.
T Consensus 181 v~~TD~iQ~~i~~~~~~vi~~~~~~~~gG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~qR~ 260 (483)
T PRK09442 181 VVLTDALQGIVMLVGTVILLIGVIHAGGGLENAVQTLQAIDPQLVTPQGADDILSPPFMTSFWILVCFGVIGLPHTAVRC 260 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhcCccccCCCCCCccccHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 87777666666655544433322211 0 111111121112 1111111111222333444444444
Q ss_pred hhhcCCCCchhHHHHHHHHHHHHHHHHHHHHH-H--HhccccccccccHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH
Q 011037 295 EETKKPSRDIPIGLVGSMCMITAVYCLMALAL-T--MMVKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLV 371 (495)
Q Consensus 295 ~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~-~--~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 371 (495)
=..||+ |+..|+..++.+...++++...+.- . ...|.. .+.+..+.....+..++++..++..+++.+.+++..+
T Consensus 261 ~aaks~-~~a~~~~~~~~~~~~~~~~~~~~~G~~~~~~~p~~-~~~~~~~p~l~~~~lp~~l~gl~~a~~~aA~mST~~s 338 (483)
T PRK09442 261 MSYKDS-KALHRGIIIGTIVVGFLMFGMHLAGALGRAVLPDL-TVPDKVIPTLMLKVLPPFAAGIFLAAPMAAIMSTVDS 338 (483)
T ss_pred HHcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCccchHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 557775 6788888888776666655444331 1 113331 1234455566666777888888888888888888777
Q ss_pred HhhchhHHHHHHHhc
Q 011037 372 GSLGQARYTTQIARA 386 (495)
Q Consensus 372 ~~~~~sR~l~~~ard 386 (495)
.+.+.+=+ .+||
T Consensus 339 ~l~~~ss~---~~~D 350 (483)
T PRK09442 339 QLLQSSST---IIKD 350 (483)
T ss_pred HHHHHHHH---HHHH
Confidence 77665543 4565
No 64
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=98.49 E-value=0.00046 Score=69.22 Aligned_cols=238 Identities=11% Similarity=-0.005 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccccccchhHhHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCc
Q 011037 113 IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNS 192 (495)
Q Consensus 113 ~~~~~li~~~~~~~~~~~~ael~s~~P~~Gg~y~~~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~ 192 (495)
++++.+++-++.......+++++.+...+ +..-.|..||.+-+.+.....++.++...+.+....++..... +
T Consensus 54 si~aillG~llG~i~~A~~s~~Ga~~Glp--qmi~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~-~---- 126 (442)
T COG1457 54 SLLAILLGNLLGGIFMAYFSYQGARTGLP--QMILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGSG-T---- 126 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCCC--hheeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccccccC-C----
Confidence 55555555555555555555555444332 4455567889999888888888888877787777766652221 1
Q ss_pred ccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhheecc-ccCCCCCCCCCChh
Q 011037 193 DLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHG-KTTNLDPFLPYGTE 271 (495)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~-~~~~~~~~~~~~~~ 271 (495)
+.| .....+++.++.++..++|.|...+++.+......+..+......+-.. ..+-.....|..+.
T Consensus 127 --------~~~-----~~~~ili~g~l~~l~~ifG~r~l~~l~~~a~~~~~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~ 193 (442)
T COG1457 127 --------GLP-----VWAGILIIGVLMTLVTIFGYRALHKLERIAVPLLLLLFLYLLALLFRSKGGLDALWVKGPTSPL 193 (442)
T ss_pred --------CCc-----HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccceeeccCCCcch
Confidence 112 2245556666788888899999999999998888777666655444422 22222222244455
Q ss_pred hHHHHHHHHHHHhhc-hhHHHHhhhhhcCCC--CchhHHHHHHHHHHHHHHHHHHHHHHHhccccccccccHHHHHHHHh
Q 011037 272 GVFEAAAVVYWSYTG-FDMVATMAEETKKPS--RDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQI 348 (495)
Q Consensus 272 ~~~~~~~~~~~~f~G-~e~~~~~a~E~k~p~--k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 348 (495)
.+..++..++-.+.. --.++.++.-.|+|+ |.+--+.....+-....+++..+.......+| +..+.....
T Consensus 194 ~fl~a~slv~g~~~sw~~~~aDysRy~~~~t~~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~------~~~~~~~~~ 267 (442)
T COG1457 194 SFLSALSLVIGSFASWGPYAADYSRYAPSPTPSKAFLAAVLGFFLGTSFMMILGAALAAAAGNAD------SIADVMLGL 267 (442)
T ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc------hHHHHHHhc
Confidence 555555544333333 345566666677765 33333333333333333444444333322222 334444444
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHhhchhH
Q 011037 349 GMNWAKYLVSVCALKGMTTSLLVGSLGQAR 378 (495)
Q Consensus 349 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~sR 378 (495)
|+ +.....+.+.++..++..-.+|+++=
T Consensus 268 G~--~g~~~~lil~l~~~ttN~~nlYsa~l 295 (442)
T COG1457 268 GG--FGLPAILILVLGTVTTNANNLYSAGL 295 (442)
T ss_pred cc--HHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 43 34455555555655555555555443
No 65
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=98.44 E-value=0.00076 Score=68.69 Aligned_cols=288 Identities=11% Similarity=0.037 Sum_probs=158.1
Q ss_pred cccCCHhHHHHHHhhhhhhhhhhhccHHhHHhccChHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHhHHHHhch-
Q 011037 76 QKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGD- 154 (495)
Q Consensus 76 ~r~l~~~~~~~l~~~~~ig~g~~~~~~~~~~~~~G~~~~~~~li~~~~~~~~~~~~ael~s~~P~~Gg~y~~~~~~~g~- 154 (495)
.|+++++....-..++..+.+.+...+..... .|...++..+...+.....+..+.+.-++.+ .-..++|.++.+|+
T Consensus 2 gr~~~~~~~~~s~~at~~s~~t~ig~~~~~y~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~T~~e~l~~Ryg~~ 79 (407)
T TIGR00813 2 GRSLGGWVVAASLFASYISASQFLGLPGAIYA-YGFAIGFYELGALVLLIILGWLFVPIFINNG-AYTMPEYLEKRFGKR 79 (407)
T ss_pred CCCCCcHHHHHHHHHHHhhHHHHhcCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCchhHHHHHHhCch
Confidence 47888888888777777766555554444444 4544332222223334445666666655544 44588999999998
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhhHHH
Q 011037 155 FVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWL 234 (495)
Q Consensus 155 ~~g~~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~ 234 (495)
....+.+....+..+...+....+.+..+....+ . +. ...+.+..++...+...-|.|...+.
T Consensus 80 ~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~g-i------------~~----~~~~ii~~~i~~~Yt~~GG~~av~~T 142 (407)
T TIGR00813 80 ILRGLSVLSLILYIFLYMSVDLFSGALLIELITG-L------------DL----YLSLLLLGAITILYTVFGGLKAVVWT 142 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-c------------hH----HHHHHHHHHHHHHHHHHcchHHHHHH
Confidence 4666667777777778888888888888887765 1 11 11222333344455666788887777
Q ss_pred HHHHHHHHHHHHHHHHHhheeccc----------cC--------CCCCCCCC------ChhhHHHHHHHHHHHhhchhHH
Q 011037 235 NWISSIVSSCVIVFVIIVGFVHGK----------TT--------NLDPFLPY------GTEGVFEAAAVVYWSYTGFDMV 290 (495)
Q Consensus 235 ~~~~~~~~l~~~~~~~i~~~~~~~----------~~--------~~~~~~~~------~~~~~~~~~~~~~~~f~G~e~~ 290 (495)
..+=.++.++..+++.+..+.+.+ .. +....... .|.-...+.......+..-...
T Consensus 143 d~iQ~~i~~~~~i~~~~~~~~~~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 222 (407)
T TIGR00813 143 DTIQAVIMILGTFILPVFAFSEVGGLGTFVEKASQAAPTNPSPDDLYDFFRDPSTSDLPWGAGVFGLPHVALWYWTNQVI 222 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcCCCccchhhhccCCCCCcccCCChHHHHhChHHHHHHHhcCHHH
Confidence 766666655544333332222110 00 00000000 0100011111110111011111
Q ss_pred HHhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHH---Hhcc----ccc----cccccHHHHHHHHhCchHHHHHHHH
Q 011037 291 ATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALT---MMVK----YTE----IDMNAAYSIAFRQIGMNWAKYLVSV 359 (495)
Q Consensus 291 ~~~a~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~---~~~~----~~~----~~~~~p~~~~~~~~~~~~~~~~~~~ 359 (495)
.+-.=-.||+ |+.+|+..++.....+.+++..+.-. ...+ ..+ .+.+..+....++..++++..++.+
T Consensus 223 ~qR~~a~ks~-~~~r~~~~~~~~~~~~~~~~~~l~G~~a~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~lp~~l~gl~~a 301 (407)
T TIGR00813 223 VQRCLAAKSA-KHAKKGCLISGVLKLLPMFGAVLPGLIARALYTDIDPALAGAVNQNSDQAYPLLVQELMPPGLAGLFLA 301 (407)
T ss_pred hhHHHhcCCH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhhcccCCChhhHHHHHHHHHcCcchHHHHHH
Confidence 2233345663 77889988887766666554433311 1122 111 1234455666677777888888888
Q ss_pred HHHHHHHHHHHHHhhchhHHHHHHHhc
Q 011037 360 CALKGMTTSLLVGSLGQARYTTQIARA 386 (495)
Q Consensus 360 ~~~~s~~~~~~~~~~~~sR~l~~~ard 386 (495)
+++.+.+++..+.+.+.+-. .+||
T Consensus 302 gilaA~mST~~s~l~a~ss~---~~~D 325 (407)
T TIGR00813 302 AILAAVMSTLSSQLNSASTV---FTMD 325 (407)
T ss_pred HHHHHHHHhhhhhHHHHHHH---HHHH
Confidence 88888888888877776655 3455
No 66
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.41 E-value=0.003 Score=65.05 Aligned_cols=238 Identities=12% Similarity=0.038 Sum_probs=121.0
Q ss_pred ccccccCCHhHHHHHHhhhhhhhhhhhccHHhHHhccChH-HHHHHHHHHHHHHHHHHHHhhhhhccccccchhHhHHHH
Q 011037 73 QPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVE 151 (495)
Q Consensus 73 ~~l~r~l~~~~~~~l~~~~~ig~g~~~~~~~~~~~~~G~~-~~~~~li~~~~~~~~~~~~ael~s~~P~~Gg~y~~~~~~ 151 (495)
++.+|+.++++.+.+=++..+....+..-.......-+.. ++++.+++.++........+..+.++-. ......|..
T Consensus 8 p~~~R~~~~~~~~~~W~~~~~~v~~~~~Ga~l~~~GLs~~~ailai~lG~~i~~~~~~l~~~~G~r~Gl--~~~v~sR~~ 85 (442)
T TIGR00800 8 KEEERTWSFLNYFSLWLGAAFNIATWAIGALGLPLGLSWWQSVIAIILGNLLGGIFVALNSRAGAKYGL--PFPVLSRAS 85 (442)
T ss_pred CcccCCccHHHHHHHHHHHhhhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHhCC--Ccchhhhhh
Confidence 3446778999988887776654333332222221101222 5555555555544444444444444332 467778899
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHH--HHHhhhhh
Q 011037 152 LGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCN--GIAMSGTR 229 (495)
Q Consensus 152 ~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~g~~ 229 (495)
||.+-+.+.+...++..+...+.++...++.+...+....+.... .+++......+..+++..+. +....|.|
T Consensus 86 FG~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~-----~~~~~t~~~~~~~~i~~~l~~~~~~~~g~~ 160 (442)
T TIGR00800 86 FGIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLH-----LGNGMTTLELICFIIFWALVLVFLFFFGYK 160 (442)
T ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccc-----cCCcccHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 999999999988888888888888888887777666522111000 01000001223333322222 23456666
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhheeccccCC---CCC--CCCCChhhHHHHHHHHH-HHhhchhHHHHhhhhhcCCCCc
Q 011037 230 RSSWLNWISSIVSSCVIVFVIIVGFVHGKTTN---LDP--FLPYGTEGVFEAAAVVY-WSYTGFDMVATMAEETKKPSRD 303 (495)
Q Consensus 230 ~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~-~~f~G~e~~~~~a~E~k~p~k~ 303 (495)
...+.+.......++.++.++.......+..+ ..+ ..+.+...++.++...+ +...+....+.++...|+++..
T Consensus 161 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy~~~~~~~ 240 (442)
T TIGR00800 161 IRHLFEWLAVVPPFAAFGMLIWALSKAHGKGPLGELTGTLHGSTGAWAFLYALSLVIGSFATWATNAPDFTRFGKSKKTA 240 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhhhhhcCCccch
Confidence 66666655555444444333322221111111 111 11222344444443322 2233445677888888886544
Q ss_pred hhHHHHHHHHHHHHH
Q 011037 304 IPIGLVGSMCMITAV 318 (495)
Q Consensus 304 ~p~ai~~~~~~~~~~ 318 (495)
. ++...+.....+.
T Consensus 241 ~-~~~~~~~~~~~~~ 254 (442)
T TIGR00800 241 I-WGQFLALPGGFTL 254 (442)
T ss_pred H-HHHHHHHHHHHHH
Confidence 3 4455444444444
No 67
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=98.40 E-value=0.0013 Score=68.25 Aligned_cols=287 Identities=10% Similarity=0.030 Sum_probs=155.1
Q ss_pred cccCCHhHHHHHHhhhhhhhhhhhccHHhHHhccChH-HHHHH---HHHHHHHHHHHHHHhhhhhccccccchhHhHHHH
Q 011037 76 QKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSY---LASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVE 151 (495)
Q Consensus 76 ~r~l~~~~~~~l~~~~~ig~g~~~~~~~~~~~~~G~~-~~~~~---li~~~~~~~~~~~~ael~s~~P~~Gg~y~~~~~~ 151 (495)
.|+++++....-.+++.++.+.+...+..... .|.. ..+.+ ..+.++....+.-+.+..++. +.-..++|.++.
T Consensus 39 gr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~T~~e~l~~R 116 (471)
T TIGR02119 39 GRSMGGFVLAMTLVATYGSASSFIGGPGIAYN-YGLGWVLLAMIQVPTGYFVLGVLGKKFAIISRKY-NAITINDVLKAR 116 (471)
T ss_pred CCcccHHHHHHHHHHHHhhHHHHcCcHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCccHHHHHHHH
Confidence 68899998888888887776666654443333 4543 11111 111111122233344444544 334688999999
Q ss_pred hchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhh
Q 011037 152 LGDF-VAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRR 230 (495)
Q Consensus 152 ~g~~-~g~~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~ 230 (495)
+|++ .....+....+...........+.+..++..++ . +. ...+.+..++.+.+...-|.|.
T Consensus 117 yg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~g-i------------~~----~~~iii~~~iv~iYt~~GG~~a 179 (471)
T TIGR02119 117 YNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTG-L------------SY----LTALFIFSSSVLIYTTFGGFRA 179 (471)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-C------------CH----HHHHHHHHHHHHHHHHhhhHHH
Confidence 9954 556666666555555556666666777776655 1 11 1122223334555666678888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhheecc-cc------------CCCCCCCCCChh--hHHHHH-HHHHHHhhchhHHHHhh
Q 011037 231 SSWLNWISSIVSSCVIVFVIIVGFVHG-KT------------TNLDPFLPYGTE--GVFEAA-AVVYWSYTGFDMVATMA 294 (495)
Q Consensus 231 ~~~~~~~~~~~~l~~~~~~~i~~~~~~-~~------------~~~~~~~~~~~~--~~~~~~-~~~~~~f~G~e~~~~~a 294 (495)
..+.+.+-.++.++..+++.+..+... +. +...++.+.++. .+...+ ....+...+.....+-.
T Consensus 180 v~~td~iQ~~v~~~~~~~~~~~~l~~~gG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~~R~ 259 (471)
T TIGR02119 180 VALTDAIQGIVMFTGTTILLIAVIKAGGGVEKIMEKLKDIDPNLITPFGGDGGLTKPFVASFWILVGIGVIGLPQTAVRC 259 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCccccCCCCCCcchhhhHHHHHHHHHHHHHhCchHHHHHH
Confidence 888777776666655444443332221 11 111112112211 111111 11122233444444455
Q ss_pred hhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHh---ccccccccccHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH
Q 011037 295 EETKKPSRDIPIGLVGSMCMITAVYCLMALALTMM---VKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLV 371 (495)
Q Consensus 295 ~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~---~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 371 (495)
-..||+ |+..|+..++.+...++++...+.-... .|. ..+.+..+.....+..++++..++..+++.+.+++..+
T Consensus 260 ~aak~~-~~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~-~~~~d~~~p~~~~~~lp~~~~gl~~a~llaA~mST~~s 337 (471)
T TIGR02119 260 MSYKDS-KAMHRAMIIGTIVVGIIMLGMHLAGVLGRAVIPD-LTVPDKVIPLLAIKVLPPILAGIFLAAPMAAIMSTVNS 337 (471)
T ss_pred HhcCCH-HHHhhhHhHHHHHHHHHHHHHHHHHHhhhhhccC-CCCccchHHHHHHHHchHHHHHHHHHHHHHHHHHHHHH
Confidence 667775 7788999888776666655444332111 222 11234455555556666788888888888888888877
Q ss_pred HhhchhHHHHHHHhc
Q 011037 372 GSLGQARYTTQIARA 386 (495)
Q Consensus 372 ~~~~~sR~l~~~ard 386 (495)
.+.+.+-. .+||
T Consensus 338 ~l~~~ss~---~~~D 349 (471)
T TIGR02119 338 LLLQSSST---IIKD 349 (471)
T ss_pred HHHHHHHH---HHHH
Confidence 77666544 4555
No 68
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=98.32 E-value=0.00017 Score=73.46 Aligned_cols=288 Identities=15% Similarity=0.111 Sum_probs=137.1
Q ss_pred cccCCHhHHHHHHhhhhhhhhhhhccHHhHHhccChHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHhHHHHhchh
Q 011037 76 QKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDF 155 (495)
Q Consensus 76 ~r~l~~~~~~~l~~~~~ig~g~~~~~~~~~~~~~G~~~~~~~li~~~~~~~~~~~~ael~s~~P~~Gg~y~~~~~~~g~~ 155 (495)
.|+++++-..+-.+++.++.+.+......... .|....+..+...+......+.++.--++. +.-...+|.++.+|+.
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~-~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~-~~~T~~e~~~~Ryg~~ 82 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYS-YGISGLWYAIGYAIGFLLFALFFAPRLRRS-GAVTIPEYLEKRYGSK 82 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHH-T-GGGGHHHHHHHHHHHHHHHHTHHHHHHT-T--SHHHHHHHHT-HH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCcceeeeccccchhHHHHHHHHHHhhccc-chhhhhhhhhhhcCCc
Confidence 48889887777777777765555543333333 565533322322333333444444443433 3335889999999988
Q ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhhHH
Q 011037 156 V--AYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSW 233 (495)
Q Consensus 156 ~--g~~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~ 233 (495)
. ..+.+....+......+....+.+..++...+ . +. .....+..++...+...-|.|...+
T Consensus 83 ~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~g-i------------~~----~~~~~i~~~i~~iYt~~GGl~av~~ 145 (406)
T PF00474_consen 83 ALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFG-I------------PY----NTAILIVGVIVIIYTFFGGLRAVAW 145 (406)
T ss_dssp H-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT---------------H----HHHHHHHHHHHHHTTCTT------S
T ss_pred hhhhhhcccccchhhhhhhhccccccccchhhccc-h------------hh----hHHHHHHHHHHHHhhhhhhHhhhhH
Confidence 8 56655556666667777888888888877665 1 10 1122223333344555568887777
Q ss_pred HHHHHHHHHHHHHHHHHHhheec-------------cccCCCCCCCCCCh---hhHHHHHHHHHHHhhchhHHHHhhhh-
Q 011037 234 LNWISSIVSSCVIVFVIIVGFVH-------------GKTTNLDPFLPYGT---EGVFEAAAVVYWSYTGFDMVATMAEE- 296 (495)
Q Consensus 234 ~~~~~~~~~l~~~~~~~i~~~~~-------------~~~~~~~~~~~~~~---~~~~~~~~~~~~~f~G~e~~~~~a~E- 296 (495)
...+-.++.++..+++.+..+.. .+++....+.|.+. ...............|.....++...
T Consensus 146 td~iQ~~i~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~qR~ 225 (406)
T PF00474_consen 146 TDFIQGVIMIIGAIVVLIFVLSAVGGFGGLFQNLSAAHPNFLDLFNPGGFSMFSSPLFFLSFWIALMLGTFGAPHFWQRF 225 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-GGGG-SS--SS-----SSGGGGS-TTHHHHSTHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccchhcCCchhhHHHHhhcCcccccccCCCCcccccchhhhHHHHHHHHhhhccchHHHHHH
Confidence 66666655555444443332211 01100111112221 00010000000112233333433333
Q ss_pred --hcCCCCchhHHHHHHHHHHHHHHHHHHH------HHHHhccc----cccccccHHHHHHHHhCchHHHHHHHHHHHHH
Q 011037 297 --TKKPSRDIPIGLVGSMCMITAVYCLMAL------ALTMMVKY----TEIDMNAAYSIAFRQIGMNWAKYLVSVCALKG 364 (495)
Q Consensus 297 --~k~p~k~~p~ai~~~~~~~~~~y~~~~~------~~~~~~~~----~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~s 364 (495)
.||+ |+..|+...+.....+++..... ......|+ ++.+.+..+.....+..+++...++.++++.+
T Consensus 226 ~aak~~-~~ar~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~gl~~~~~~aA 304 (406)
T PF00474_consen 226 LAAKSP-KTARKGMLIAIIFLIIFYFLTIFIGLIAIALFGLYPDAAGPSLGDPDLAFPYLAAQYLPPGLAGLFLAGILAA 304 (406)
T ss_dssp HSSSHH-HHHHHHHHHHHGGGTTHHHHHHHHHHHH-HHHHHH-TT--S-SSSGGGHHHHHHT-TS-TTHHHHHHHHHHHH
T ss_pred HhcCCH-HHHHHHHhHHhhhheeeehHHhhhhhhhhcccccccccccccccCCcccchhhhhhhccchhHHHHHHHHHHh
Confidence 3553 67888887776554444443211 11111221 11223345667777777788888888888888
Q ss_pred HHHHHHHHhhchhHHHHHHHhc
Q 011037 365 MTTSLLVGSLGQARYTTQIARA 386 (495)
Q Consensus 365 ~~~~~~~~~~~~sR~l~~~ard 386 (495)
.+++..+.+.+.+-. ++||
T Consensus 305 ~~ST~~s~l~a~ss~---~~~D 323 (406)
T PF00474_consen 305 IMSTADSLLLAISSI---FSRD 323 (406)
T ss_dssp HHHHHHHHHHHHHHH---HHHH
T ss_pred hhHHHHHHHhhhhhh---hhHH
Confidence 888888877766654 4677
No 69
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=98.27 E-value=0.0039 Score=65.01 Aligned_cols=286 Identities=12% Similarity=0.057 Sum_probs=140.9
Q ss_pred cccCCHhHHHHHHhhhhhhhhhhhc-cHHhHHhccChHHHHHHHHHHHH-HHHHHHHHhhhhhccc----cccchhHhHH
Q 011037 76 QKCLTWWDLTWLCFGSVVGSGIFVI-TGQEAKKHAGPAIVLSYLASGLS-ALLSAFCYTEFAVEIP----VAGGSFSFLR 149 (495)
Q Consensus 76 ~r~l~~~~~~~l~~~~~ig~g~~~~-~~~~~~~~~G~~~~~~~li~~~~-~~~~~~~~ael~s~~P----~~Gg~y~~~~ 149 (495)
.|+++++-...-..++.++...+.. ++.... .|....+.. ++..+ .+...+.+++--+++. ..-..++|.+
T Consensus 35 gr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~--~G~~~~~~~-~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~ 111 (487)
T TIGR02121 35 GRSLGPFVTALSAGASDMSGWLLMGLPGALYV--TGLSELWIA-IGLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFE 111 (487)
T ss_pred CCcccHHHHHHHHHHHHHhHHHHHhhHHHHHH--hhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHH
Confidence 5889888776555555555444443 444433 455432222 12222 2223334444333222 2234799999
Q ss_pred HHhch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhh
Q 011037 150 VELGD---FVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMS 226 (495)
Q Consensus 150 ~~~g~---~~g~~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 226 (495)
+.+|+ ....+.+....+......+....+.+..+....+ . +. ...+.+..++.+.+...-
T Consensus 112 ~Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~g-i------------~~----~~~iii~~~i~~~Yt~~G 174 (487)
T TIGR02121 112 NRFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFG-L------------DY----KTGLLIGALIIVIYTFFG 174 (487)
T ss_pred HHhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-c------------cH----HHHHHHHHHHHHHHHHhh
Confidence 99994 4554555555555555566666666777766654 1 11 112223334455566667
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhheec-c------------ccCCCCCCCCCChhhHHHHHHHHHHHhhchhHHHHh
Q 011037 227 GTRRSSWLNWISSIVSSCVIVFVIIVGFVH-G------------KTTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATM 293 (495)
Q Consensus 227 g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~-~------------~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~ 293 (495)
|.|...+...+=.++.++..+++.+..+.. + +++....+.+..+..+...+.. ...+.|.....+-
T Consensus 175 Gl~av~~TD~iQ~~i~~~~~~~v~~~~~~~~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~p~~~qR 253 (487)
T TIGR02121 175 GFLAVSWTDFVQGLLMFFALVLVPIVALFNLGGFGETLSAVAAINPHLLDMFKGASVIAIISLLAW-GLGYFGQPHIIVR 253 (487)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhCccccCCCCCCCHHHHHHHHHH-HHHhccchHHHHH
Confidence 888777776666665555443333322211 1 1111111222223223222211 1122233332333
Q ss_pred hhhhcCCCCchhHHHHHHHHHHHHHHHHHHHH--HH-Hhccc-ccc---ccccHHHHHHHHhCchHHHHHHHHHHHHHHH
Q 011037 294 AEETKKPSRDIPIGLVGSMCMITAVYCLMALA--LT-MMVKY-TEI---DMNAAYSIAFRQIGMNWAKYLVSVCALKGMT 366 (495)
Q Consensus 294 a~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~--~~-~~~~~-~~~---~~~~p~~~~~~~~~~~~~~~~~~~~~~~s~~ 366 (495)
.--.||+ |+..|+..++.....+.++...+. .. ...+. .+. +.+..+....++..++++..++..+++.+.+
T Consensus 254 ~~aaks~-k~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~p~~~~~~~d~~~~~~~~~~~p~~l~gl~~a~ilaA~m 332 (487)
T TIGR02121 254 FMAIRSH-KELPKARRIGMSWMILSLLGAIAVGLTGIAYFNKNPHVELVDRETIFIVLSQILFHPWIAGILLAAILAAIM 332 (487)
T ss_pred HHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccCCCcchhHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 3334554 677788777654433322211111 11 11121 111 2234455556666778888888888888888
Q ss_pred HHHHHHhhchhHHHHHHHhc
Q 011037 367 TSLLVGSLGQARYTTQIARA 386 (495)
Q Consensus 367 ~~~~~~~~~~sR~l~~~ard 386 (495)
++..+.+.+.|-. .+||
T Consensus 333 ST~~s~l~s~ss~---~~~D 349 (487)
T TIGR02121 333 STISSQLLVSSSA---LTED 349 (487)
T ss_pred HHHHHHHHHHHHH---HHHH
Confidence 8888887777654 4455
No 70
>PRK11017 codB cytosine permease; Provisional
Probab=98.27 E-value=0.007 Score=61.43 Aligned_cols=215 Identities=12% Similarity=0.036 Sum_probs=112.5
Q ss_pred cccCCHhHHHHHHhhhhhhhhhhhccHHhHHhccChH-HHHHHHHHHHHHHHHHHHHhhhhhcccccc-chhHhHHHHhc
Q 011037 76 QKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVAG-GSFSFLRVELG 153 (495)
Q Consensus 76 ~r~l~~~~~~~l~~~~~ig~g~~~~~~~~~~~~~G~~-~~~~~li~~~~~~~~~~~~ael~s~~P~~G-g~y~~~~~~~g 153 (495)
+|+ +.++....-++..+....+...+.. ...-+.. ++++.+++.++........+..+ |+.| ......|..||
T Consensus 8 ~r~-~~~~~~~~~~g~~~~~~~~~~g~~l-~~GLs~~~ai~aiilG~~i~~~~~~l~~~~G---~k~G~~~~v~sR~~FG 82 (404)
T PRK11017 8 ARK-GVLSLTMVMLGFTFFSASMWAGGTL-GTGLSFVDFLLAVLIGNLLLGIYTAALGYIG---AKTGLSTHLLARFSFG 82 (404)
T ss_pred Hhc-chHhHHHHHHHHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---hccCcCHHHHHHHHhc
Confidence 455 7788665555544332222222222 1112333 66666666555444444444333 4444 36667788999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhhHH
Q 011037 154 DFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSW 233 (495)
Q Consensus 154 ~~~g~~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~ 233 (495)
.+-+.+.+....+..+...+.+....+..+....+ . +. ....+++.++.......|.|...+
T Consensus 83 ~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~~-~------------~~-----~~~~~i~~~l~~~~~~~G~~~i~~ 144 (404)
T PRK11017 83 EKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKATG-L------------DI-----NLLIVLSGLLMTVTAYFGISALTI 144 (404)
T ss_pred hhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-C------------CH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888888777777776667766666655555433 1 11 123344455566667788888889
Q ss_pred HHHHHHHHHHHHHHHHHHhheeccc-cCCCCCCCCCChhhHHHHHHHHH-HHhhchhHHHHhhhhhcCCCCchhHHHHHH
Q 011037 234 LNWISSIVSSCVIVFVIIVGFVHGK-TTNLDPFLPYGTEGVFEAAAVVY-WSYTGFDMVATMAEETKKPSRDIPIGLVGS 311 (495)
Q Consensus 234 ~~~~~~~~~l~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~f~G~e~~~~~a~E~k~p~k~~p~ai~~~ 311 (495)
++.+.....++.++...+......+ .+......+.+...+..++...+ +...+.-..+.++...|++++.+ .+...+
T Consensus 145 ~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~g~~~~~~~~~~DysRy~k~~~~~~-~~~~lg 223 (404)
T PRK11017 145 LSRIAVPAIALLGGYSVWLAVNDVGGLDGLKAIVPAEPLDFSAALTLVVGSFISGGTLTADFVRFGRSAKIAV-LATMVA 223 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCchhhhhcCCCCCcccHHHHHHHHHHHHHHhHhcCCChHhhccCcccee-ehhHHH
Confidence 9888877666655444432222211 11111111222233443333222 22334455667777888765443 444444
Q ss_pred HHH
Q 011037 312 MCM 314 (495)
Q Consensus 312 ~~~ 314 (495)
..+
T Consensus 224 ~~i 226 (404)
T PRK11017 224 FFL 226 (404)
T ss_pred HHH
Confidence 433
No 71
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=98.17 E-value=0.0036 Score=62.95 Aligned_cols=272 Identities=13% Similarity=0.110 Sum_probs=148.9
Q ss_pred hhhhhhhhhhccHHhHHhccChH---HHHHHHHHHHHHHHHHHHHhhhhhccccccchhHhHHHHhchhHHHHHHHHHHH
Q 011037 90 GSVVGSGIFVITGQEAKKHAGPA---IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNILL 166 (495)
Q Consensus 90 ~~~ig~g~~~~~~~~~~~~~G~~---~~~~~li~~~~~~~~~~~~ael~s~~P~~Gg~y~~~~~~~g~~~g~~~g~~~~l 166 (495)
+...|.|-..-|+..-.. +|.. +.+++++.++..=..+..-. -..||.+.=..+..||+.|.+......+
T Consensus 14 amFFGAGNLIFPp~lG~~-aG~~~~~a~~GF~lTgV~lP~Lgvia~------~~~~~~~~~l~~~v~~~f~~if~~~i~l 86 (427)
T PF05525_consen 14 AMFFGAGNLIFPPFLGQQ-AGSNWWPAMIGFLLTGVGLPLLGVIAV------AKSGGGIEDLASRVGPKFALIFTILIYL 86 (427)
T ss_pred HHHhCCccccchHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHH------hhcCCCHHHHhcccCcHHHHHHHHHHHH
Confidence 334577777766655444 7764 56667776665433332211 1345455555566788887776643332
Q ss_pred HH--HHHHHHHHHHHHH-HHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q 011037 167 EA--VVGAAGLARSWSS-YLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSS 243 (495)
Q Consensus 167 ~~--~~~~a~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~l 243 (495)
.. ....+=.+...-+ .+...++ . +......+..+++..+..++.+..-|...++-.+++.+.+
T Consensus 87 ~IGP~~aiPRtaa~sfe~~i~p~~~------------~--~~~~~~~ifs~iFF~i~~~l~~~p~kivd~iGk~LTP~LL 152 (427)
T PF05525_consen 87 SIGPLFAIPRTAAVSFEMGIAPFFP------------E--NSNISLLIFSIIFFAITYLLSLNPSKIVDRIGKFLTPILL 152 (427)
T ss_pred HHHhcccCcchhhhhHHHhhhccCC------------c--ccccchhhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHH
Confidence 22 1111111111111 1112211 1 1112245677888888999999999999999999999999
Q ss_pred HHHHHHHHhheeccccC--CCC-CCCCCC-hhhHHHHH----HHHHHHhhchhHHHHhhhhhcCCCCchhHHHHHHHHHH
Q 011037 244 CVIVFVIIVGFVHGKTT--NLD-PFLPYG-TEGVFEAA----AVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMI 315 (495)
Q Consensus 244 ~~~~~~~i~~~~~~~~~--~~~-~~~~~~-~~~~~~~~----~~~~~~f~G~e~~~~~a~E~k~p~k~~p~ai~~~~~~~ 315 (495)
+.++++++.++.....+ ... ++..+. ..|+..|- ..+...|...-..+--....||+ |+..|.+..+-++.
T Consensus 153 ~~l~ilii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMD~laal~Fg~iIi~~i~~~g~~~~-k~~~~~~~~ag~ia 231 (427)
T PF05525_consen 153 ILLAILIIKGIFSPIGPPQAPSGAYASNPFFKGFLEGYQTMDALAALAFGIIIINAIRQKGYKDK-KEIKKYTIKAGLIA 231 (427)
T ss_pred HHHHHHHHHHHHcCCCCccccchhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHH
Confidence 99988888887753221 111 111111 12222221 11223333333333333344443 44445554444444
Q ss_pred HHH----HHHHHHHHHHhccc--cccccccHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHH
Q 011037 316 TAV----YCLMALALTMMVKY--TEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQI 383 (495)
Q Consensus 316 ~~~----y~~~~~~~~~~~~~--~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~~~ 383 (495)
+++ |....+.-....+. ++.+..+.+..+.++..++.+..++.+.+.++++++..+-+.+.+.....+
T Consensus 232 ~~lL~~IY~gL~~lGa~~~~~~~~~~~g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~ 305 (427)
T PF05525_consen 232 GILLALIYGGLAYLGATSSGSFPDDINGAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSEL 305 (427)
T ss_pred HHHHHHHHHHHHHHccCCcccccCCCCHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443 44443332111111 112222456667777777888999999999999999999988888876554
No 72
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=98.16 E-value=0.011 Score=61.80 Aligned_cols=287 Identities=9% Similarity=-0.013 Sum_probs=137.0
Q ss_pred cccCCHhHHHHHHhhhhhhhhhhhccHHhHHhccChHHHHHHHHHHHHH-HHHHHHHhh-h---hhccccccchhHhHHH
Q 011037 76 QKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSA-LLSAFCYTE-F---AVEIPVAGGSFSFLRV 150 (495)
Q Consensus 76 ~r~l~~~~~~~l~~~~~ig~g~~~~~~~~~~~~~G~~~~~~~li~~~~~-~~~~~~~ae-l---~s~~P~~Gg~y~~~~~ 150 (495)
.|++++|-...-..++.++...+...+..... .|....+.. ++..+. +.....++. + ..+-+..--.++|.++
T Consensus 39 gr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~-~G~~~~~~~-~~~~~~~~l~~~~~~~~l~~~~~~~~~~~T~~e~l~~ 116 (502)
T PRK15419 39 GRSLGPFVTALSAGASDMSGWLLMGLPGAVFL-SGISESWIA-IGLTLGAWINWKLVAGRLRVHTEYNNNALTLPDYFTG 116 (502)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHhhHHHHH-cCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCceeHHHHHHH
Confidence 68999998877766666665555543333333 565432221 222222 111111111 1 1112233357899999
Q ss_pred Hhch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhh
Q 011037 151 ELGD---FVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSG 227 (495)
Q Consensus 151 ~~g~---~~g~~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 227 (495)
.+|+ ....+.+....+......+....+.+..+...++ . +. ...+.+..++.+.+...-|
T Consensus 117 Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~g-i------------~~----~~~iii~~~iv~iYt~~GG 179 (502)
T PRK15419 117 RFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFG-M------------SY----ETALWAGAAATILYTFIGG 179 (502)
T ss_pred HhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-C------------CH----HHHHHHHHHHHHHHHHhhh
Confidence 9984 4555555555555555666666666677766655 1 10 1122333344555666678
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhheec-c------------ccCCCCCCCCCChhhHHHHHHHHHHHhhchhHHHHhh
Q 011037 228 TRRSSWLNWISSIVSSCVIVFVIIVGFVH-G------------KTTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMA 294 (495)
Q Consensus 228 ~~~~~~~~~~~~~~~l~~~~~~~i~~~~~-~------------~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a 294 (495)
.|...+...+=.++.++..+++.+..+.. + +.++.....+.++..+.. .......+.|.....+-.
T Consensus 180 l~aV~~TD~iQ~~imi~g~i~~~~~~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~p~~~qR~ 258 (502)
T PRK15419 180 FLAVSWTDTVQASLMIFALILTPVIVIISVGGFGDSLEVIKQKSIENVDMLKGLNFVAIIS-LMGWGLGYFGQPHILARF 258 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcCccccCcccCCCHHHHHH-HHHHHHHHcCChHHHHhh
Confidence 88877777666666555443333322211 1 111111111122222222 111222233433322222
Q ss_pred hhhcCCCCchhHH----HHHHHHHHHHHHHHHHHHHHHh--cccc----ccccccHHHHHHHHhCchHHHHHHHHHHHHH
Q 011037 295 EETKKPSRDIPIG----LVGSMCMITAVYCLMALALTMM--VKYT----EIDMNAAYSIAFRQIGMNWAKYLVSVCALKG 364 (495)
Q Consensus 295 ~E~k~p~k~~p~a----i~~~~~~~~~~y~~~~~~~~~~--~~~~----~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~s 364 (495)
--.||+ |++.++ ..+.........+......... .|.. +.+.+..+.....+..++++..++..+++.+
T Consensus 259 ~aak~~-~~~~~a~~~~~~~~~~~~~~~~~ig~~~~~~~~~~p~~~~~~~~~~d~~~~~l~~~~lp~~l~gl~~a~ilAA 337 (502)
T PRK15419 259 MAADSH-HSIVHARRISMTWMILCLAGAVAVGFFGIAYFNEHPAVAGAVNQNAERVFIELAQILFNPWIAGILLSAILAA 337 (502)
T ss_pred eecCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCCCcchHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 334554 323333 2222222211122222222111 1110 0122344556666667788888888888888
Q ss_pred HHHHHHHHhhchhHHHHHHHhc
Q 011037 365 MTTSLLVGSLGQARYTTQIARA 386 (495)
Q Consensus 365 ~~~~~~~~~~~~sR~l~~~ard 386 (495)
.+++..+.+.+.|-. .+||
T Consensus 338 ~mST~~s~l~a~ss~---~~~D 356 (502)
T PRK15419 338 VMSTLSCQLLVCSSA---ITED 356 (502)
T ss_pred HHHHHHHHHHHHHHH---HHHH
Confidence 888888888777644 4556
No 73
>PRK12488 acetate permease; Provisional
Probab=98.13 E-value=0.019 Score=60.75 Aligned_cols=225 Identities=14% Similarity=0.086 Sum_probs=119.7
Q ss_pred cccCCHhHHHHHHhhhhhhhhhhhccHHhHHhccChHHHHHHHHHHHHHHH-HHHHHhhhhhccccccchhHhHHHHhc-
Q 011037 76 QKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALL-SAFCYTEFAVEIPVAGGSFSFLRVELG- 153 (495)
Q Consensus 76 ~r~l~~~~~~~l~~~~~ig~g~~~~~~~~~~~~~G~~~~~~~li~~~~~~~-~~~~~ael~s~~P~~Gg~y~~~~~~~g- 153 (495)
.|++++|...+...++.++...|...+..... .|...++ +.++..+.+. ..+.+++--++.-. --.++|.++.||
T Consensus 66 GR~l~~~~~~~si~at~~Sa~sflG~~G~~y~-~G~~~~~-~~~g~~~g~~~~~~~~a~~lr~~g~-~T~~d~l~~Rf~s 142 (549)
T PRK12488 66 GGGLTGMQNGLAIAGDMISAASFLGISAMMFM-NGYDGLL-YALGVLAGWPIILFLIAERLRNLGK-YTFADVVSYRLAQ 142 (549)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChhHHH-HHHHHHHHHHHHHHHHHHHHHHCCC-cchHHHHHHHcCC
Confidence 68999999987777777766665554433333 4554322 2223332222 23334444343322 357788888888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhhHH
Q 011037 154 DFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSW 233 (495)
Q Consensus 154 ~~~g~~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~ 233 (495)
+....+.+....+..+........+.+..+..+++ . +. ...+.+..++.+.+...-|.|...+
T Consensus 143 ~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~g-i------------~~----~~~iii~~~i~~~Yt~~GGm~av~~ 205 (549)
T PRK12488 143 GPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFG-I------------SY----LYAVVIVGALMVLYVTFGGMLATTW 205 (549)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-C------------CH----HHHHHHHHHHHHHHHhccchhHHHH
Confidence 56888888777777777777777777777777655 1 11 1122223334444555668888777
Q ss_pred HHHHHHHHHHHHHHHHHHhheeccc--c----------CCC-CC-CCCCC----hhhHHHHHHHHHHHhhchhHHHHhhh
Q 011037 234 LNWISSIVSSCVIVFVIIVGFVHGK--T----------TNL-DP-FLPYG----TEGVFEAAAVVYWSYTGFDMVATMAE 295 (495)
Q Consensus 234 ~~~~~~~~~l~~~~~~~i~~~~~~~--~----------~~~-~~-~~~~~----~~~~~~~~~~~~~~f~G~e~~~~~a~ 295 (495)
.+.+=.++.++..+++.+..+...+ . +.. .. +.|.+ ...++.......+.+.|.....+-.-
T Consensus 206 td~iQ~~im~~~~i~~~~~~l~~~g~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~lg~~~~p~~~qR~~ 285 (549)
T PRK12488 206 VQIIKAVLLLSGTSFMAFMVLKHFGFSTEAMFASAVAVHAKGQAILAPGGLLSNPIDAISLGLGMMFGTAGLPHILMRFF 285 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcCCcccccCHHHHHHHHHHHHHHhccCcHHHHHhh
Confidence 7766666665544433332221111 0 000 00 11111 11222222222344445544444444
Q ss_pred hhcCCCCchhHHHHHHHHHHHHHHHH
Q 011037 296 ETKKPSRDIPIGLVGSMCMITAVYCL 321 (495)
Q Consensus 296 E~k~p~k~~p~ai~~~~~~~~~~y~~ 321 (495)
-.||+ |+..|+..++.....++|+.
T Consensus 286 aaks~-k~ar~s~~~~~~~~~~~~~~ 310 (549)
T PRK12488 286 TVSDA-REARKSVLYATGFIGYFYLL 310 (549)
T ss_pred cCCCH-HHHHHHHHHHHHHHHHHHHH
Confidence 45674 77889988886655555443
No 74
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=98.12 E-value=0.0032 Score=62.69 Aligned_cols=289 Identities=14% Similarity=0.068 Sum_probs=144.2
Q ss_pred cCCHhHHH-HHHhhhhhhhhhhhccHHhHHhccChHHHHHHHHHHHHHHHHHHHHhhhhhccc-cccchhHhHHHHhchh
Q 011037 78 CLTWWDLT-WLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIP-VAGGSFSFLRVELGDF 155 (495)
Q Consensus 78 ~l~~~~~~-~l~~~~~ig~g~~~~~~~~~~~~~G~~~~~~~li~~~~~~~~~~~~ael~s~~P-~~Gg~y~~~~~~~g~~ 155 (495)
+.+.+-.+ .-+.|+-+|.|-....++....++|.+-++-|++. ++..-.-+.++|++---- +.+..-.|-+. .+++
T Consensus 7 ~w~SrlGFILAa~GsAVGLGNiWrFPy~~~~nGGgAFll~yli~-~l~~GiPlli~Ef~iGr~~~~~~~~a~~~l-~~~~ 84 (439)
T COG0733 7 QWSSRLGFILAAAGSAVGLGNIWRFPYMAGENGGGAFLLPYLIF-LLLVGIPLLLAEFAIGRRGRKNAVGAFRKL-APKK 84 (439)
T ss_pred chhhHHHHHHHHHHHHhcccccccCCeEeeecCcchHHHHHHHH-HHHHhHHHHHHHHHhhhhcCCChhHHHHHh-ccCc
Confidence 34444444 44567778999999988887775666544444443 333334445555542222 22222222222 1122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----cCC--cccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhh
Q 011037 156 VAYIAAGNILLEAVVGAAGLARSWSSYLASMID----SNN--SDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTR 229 (495)
Q Consensus 156 ~g~~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~ 229 (495)
.....||.-.+......+.++...+-.+.+... ... .....-...+...+.......-.+++.+..++..+|++
T Consensus 85 ~~~~~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~lt~~iv~~GV~ 164 (439)
T COG0733 85 KWEWIGWFGVLGGFLILSFYSVIGGWILSYLVKSLTGALPDTGEQFAQLFGQTISNPGLAVIFHLLFLVLTALIVSRGVK 164 (439)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhHH
Confidence 233344443333333333333333322222221 111 00000000111122222334446667777788888987
Q ss_pred h-hHHHHHHHHHHHHHHHHHHHHhheeccc---------cCCCCCCCCCChhhHHHHHHHHHHHhh-chhHHHHhhhhhc
Q 011037 230 R-SSWLNWISSIVSSCVIVFVIIVGFVHGK---------TTNLDPFLPYGTEGVFEAAAVVYWSYT-GFDMVATMAEETK 298 (495)
Q Consensus 230 ~-~~~~~~~~~~~~l~~~~~~~i~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~f~-G~e~~~~~a~E~k 298 (495)
. ..|.+.++.....+.++++.+..+...+ ..+++... ++..+..++..++|+.+ |+....+++.-.+
T Consensus 165 ~GIEk~~kimMP~Lfvl~i~Lvi~~~tLpGA~~G~~f~l~PD~s~l~--~~~v~~~AlGQ~FFsLSlG~g~mitYsSYL~ 242 (439)
T COG0733 165 KGIEKANKIMMPLLFVLFIILVIRAVTLPGAMEGLKFLFKPDFSKLT--DPKVWLAALGQAFFSLSLGFGIMITYSSYLS 242 (439)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCCHHHcC--chhhHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 7 6888888887777766666665443211 11111121 14567788888888864 8888888888777
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHH---Hhccccccccc----cHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH
Q 011037 299 KPSRDIPIGLVGSMCMITAVYCLMALALT---MMVKYTEIDMN----AAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLV 371 (495)
Q Consensus 299 ~p~k~~p~ai~~~~~~~~~~y~~~~~~~~---~~~~~~~~~~~----~p~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 371 (495)
+ |.|+++.-......-...-++.-+.+. .....+.-+.. ..+..++++.+ ...++.+..+.+...+.++
T Consensus 243 k-~~~l~~sa~~v~~~n~~~s~lAGl~Ifpa~f~~g~~~~~GpgL~Fi~LP~if~~mp---~G~~~~~lFFl~l~fAalT 318 (439)
T COG0733 243 K-KSDLVSSALSIVLLNTLISLLAGLVIFPALFSFGADASQGPGLVFIVLPAVFNQMP---LGTLFGILFFLLLLFAALT 318 (439)
T ss_pred c-ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeeehhHHHHHHHhCc---hhHHHHHHHHHHHHHHHHH
Confidence 6 577888777666655555444333322 22222211111 23566777765 3344444444444434444
Q ss_pred Hhh
Q 011037 372 GSL 374 (495)
Q Consensus 372 ~~~ 374 (495)
+..
T Consensus 319 S~i 321 (439)
T COG0733 319 SAI 321 (439)
T ss_pred HHH
Confidence 333
No 75
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=98.10 E-value=0.017 Score=60.15 Aligned_cols=281 Identities=12% Similarity=0.091 Sum_probs=149.4
Q ss_pred cccCCHhHHHHHHhhhh-hh-hhhhhccHHhHHhccChH-HHHHHH---HHHHHHHHHHHHHhhhhhccccccchhHhHH
Q 011037 76 QKCLTWWDLTWLCFGSV-VG-SGIFVITGQEAKKHAGPA-IVLSYL---ASGLSALLSAFCYTEFAVEIPVAGGSFSFLR 149 (495)
Q Consensus 76 ~r~l~~~~~~~l~~~~~-ig-~g~~~~~~~~~~~~~G~~-~~~~~l---i~~~~~~~~~~~~ael~s~~P~~Gg~y~~~~ 149 (495)
.|+++++ ..+++.+.. .+ ...+..++.... .|.. .++... ...+.....+--..+++ +-+..=..++|.+
T Consensus 37 gR~lg~~-v~~ls~~as~~s~~t~lG~~g~ay~--~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~-~~~~~~T~~d~l~ 112 (493)
T COG0591 37 GRSLGPF-VYALSAAASDTSGWTFLGLPGLAYA--SGLSGLWIAIGLLIGAFLLWLLFAPRLRRLA-KARGATTIPDFLE 112 (493)
T ss_pred CCcCChH-HHHHHHHHHHHHHHHHhcchHHHHh--cChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccCCccHHHHHH
Confidence 6899999 666666544 33 444555565554 5655 333222 33344455666666777 5555557999999
Q ss_pred HHhc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhh
Q 011037 150 VELG-DFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGT 228 (495)
Q Consensus 150 ~~~g-~~~g~~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 228 (495)
+.|| +....+.+....+..+...+....+.+..+...++ .+ . .....+....+..+....|.
T Consensus 113 ~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g-i~------------~----~~~~~~~~~~v~~Yt~~gG~ 175 (493)
T COG0591 113 ARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG-IS------------Y----VTGILIGALIVALYTFLGGL 175 (493)
T ss_pred HHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CC------------H----HHHHHHHHHHHHHHHHHcCh
Confidence 9999 88999999988899999999999988888865544 11 0 11222333444455555666
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhheec-----------cccCC---CCCCCC-CChhhHHHH---HHHHHHHhhchhHH
Q 011037 229 RRSSWLNWISSIVSSCVIVFVIIVGFVH-----------GKTTN---LDPFLP-YGTEGVFEA---AAVVYWSYTGFDMV 290 (495)
Q Consensus 229 ~~~~~~~~~~~~~~l~~~~~~~i~~~~~-----------~~~~~---~~~~~~-~~~~~~~~~---~~~~~~~f~G~e~~ 290 (495)
|...+...+=+.+.++.+..+.+..... ...++ ..++.. ..+...... .......+..-...
T Consensus 176 ~av~~Td~iqg~im~i~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~ 255 (493)
T COG0591 176 RAVVWTDFIQGLIMLIALIVIPILVLILFGGFGELFAVLASLAPLFLTHPFDGALSPIYIISLIAWGTLFLGYFGQPHIL 255 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhcccccccCcccccchHHHHHHHHHHHHHHhhhhcCchhh
Confidence 6666555544444444433333322221 01111 111111 122212111 11123334444444
Q ss_pred HHhhhhhcCCCCchhHHHHHHHHHHHHHHHHH-----HHHHHHhcccc-----ccccccHHHHHHHHhCchHHHHHHHHH
Q 011037 291 ATMAEETKKPSRDIPIGLVGSMCMITAVYCLM-----ALALTMMVKYT-----EIDMNAAYSIAFRQIGMNWAKYLVSVC 360 (495)
Q Consensus 291 ~~~a~E~k~p~k~~p~ai~~~~~~~~~~y~~~-----~~~~~~~~~~~-----~~~~~~p~~~~~~~~~~~~~~~~~~~~ 360 (495)
.+.-. .|+++| .||.....-....+.+++. ........+.. +.+.+..+.......-+++...++..+
T Consensus 256 ~r~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~g~~~~a 333 (493)
T COG0591 256 PRFMA-AKSIKS-LPKSARLAGILWPLYCLLGAFLLGLLGIAYFPLLPDLSVPLLNPELVFPYLILALFPPWIAGLLLAA 333 (493)
T ss_pred hhhhh-hccHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCHHHHHHHHHHHHChHHHHHHHHHH
Confidence 44444 455433 3433333333332222222 22222211111 123334566677777778888888888
Q ss_pred HHHHHHHHHHHHhhchhHH
Q 011037 361 ALKGMTTSLLVGSLGQARY 379 (495)
Q Consensus 361 ~~~s~~~~~~~~~~~~sR~ 379 (495)
++.+.+++..+.+...|-.
T Consensus 334 ilaAvmSt~ss~ll~~ss~ 352 (493)
T COG0591 334 ILAAVMSTASSQLLVASSA 352 (493)
T ss_pred HHHHHHHHHHHHHHhhhHH
Confidence 8888887777776666544
No 76
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=97.99 E-value=0.035 Score=58.78 Aligned_cols=281 Identities=11% Similarity=0.056 Sum_probs=134.6
Q ss_pred cccCCHhHHHHHHhhhhhhhhhhhccHHhHHhccChHHHHHHHHHHHHHH-HHHHHHhhhhhccccccchhHhHHHHhc-
Q 011037 76 QKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSAL-LSAFCYTEFAVEIPVAGGSFSFLRVELG- 153 (495)
Q Consensus 76 ~r~l~~~~~~~l~~~~~ig~g~~~~~~~~~~~~~G~~~~~~~li~~~~~~-~~~~~~ael~s~~P~~Gg~y~~~~~~~g- 153 (495)
.|++++|..-....++.++...|...+..... .|...++.. ++..+.+ ...+.+++--++.-. --..+|.++.++
T Consensus 66 Gr~~~~~~~g~si~at~~SaasflG~~G~~y~-~G~~~~~~~-~g~~~~~~i~~~~~a~~lrr~g~-~T~~d~l~~Rf~s 142 (549)
T TIGR02711 66 GGNITGFQNGLAIAGDYMSAASFLGISALVYT-SGYDGLIYS-LGFLVGWPIILFLIAERLRNLGR-YTFADVASYRLKQ 142 (549)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHH-HHHHHHHHHHHHHHHHHHHHcCC-ccHHHHHHHHcCC
Confidence 68899886655445555554444443333323 465432211 2333322 233445554444322 246677778887
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhhHH
Q 011037 154 DFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSW 233 (495)
Q Consensus 154 ~~~g~~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~ 233 (495)
|....+.+....+..+........+.+..++.+++ . +. ...+.+..++.+.+..+-|.|...+
T Consensus 143 ~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~g-i------------~~----~~~iii~~~i~~~Yt~~GGm~av~~ 205 (549)
T TIGR02711 143 RPIRILSACGSLVVVALYLIAQMVGAGKLIELLFG-L------------NY----HVAVVLVGILMVMYVLFGGMLATTW 205 (549)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-C------------CH----HHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 55677777766666666666677777777777655 1 11 1122233334444555668887777
Q ss_pred HHHHHHHHHHHHHHHHHHhheecc--------------ccCCCCCCCCCC----hhhHHHHHHHHHHHhhchhHHHHhhh
Q 011037 234 LNWISSIVSSCVIVFVIIVGFVHG--------------KTTNLDPFLPYG----TEGVFEAAAVVYWSYTGFDMVATMAE 295 (495)
Q Consensus 234 ~~~~~~~~~l~~~~~~~i~~~~~~--------------~~~~~~~~~~~~----~~~~~~~~~~~~~~f~G~e~~~~~a~ 295 (495)
.+.+=.++.++..+++.+...... ++.....+.+.+ ....+.......+...|.....+-.=
T Consensus 206 td~iQ~~im~~g~i~~~~~~~~~~ggg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~P~~~~R~~ 285 (549)
T TIGR02711 206 VQIIKAVLLLFGATFMAFMVMKSVGFSFNTLFKEAMAVHPKGVAIMSPGGLVSDPISALSLGLGLMFGTAGLPHILMRFF 285 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhhCcccccccCCCccccchHHHHHHHHHHHHHhcCCchhheeee
Confidence 776666655554433322211110 011011111111 11122211122223333322222222
Q ss_pred hhcCCCCchhHHHHHHHHHHHHHHHHHHHHH-H--Hhcccc-ccc---------cccHHHHHHHHhCchHHHHHHHHHHH
Q 011037 296 ETKKPSRDIPIGLVGSMCMITAVYCLMALAL-T--MMVKYT-EID---------MNAAYSIAFRQIGMNWAKYLVSVCAL 362 (495)
Q Consensus 296 E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~-~--~~~~~~-~~~---------~~~p~~~~~~~~~~~~~~~~~~~~~~ 362 (495)
-.||+ |+..|+..++.....++|+...+.- . ...+.+ +.. .+..........++.++..++..+.+
T Consensus 286 taks~-k~ar~s~~~~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~glv~A~~~ 364 (549)
T TIGR02711 286 TVSDA-KEARKSVFYATGFMGYFYILTFIIGFGAILLVSANPEFKDATGALIGGNNMAAVHLANAVGGNLFLGFISAVAF 364 (549)
T ss_pred ecCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccCCCcchHHHHHHHHHccHHHHHHHHHHHH
Confidence 34563 7888999888777766765544331 1 112211 110 01122233334555555555655566
Q ss_pred HHHHHHHHHHhhchh
Q 011037 363 KGMTTSLLVGSLGQA 377 (495)
Q Consensus 363 ~s~~~~~~~~~~~~s 377 (495)
.+.+++..+.+.+.+
T Consensus 365 AA~mST~~s~l~a~s 379 (549)
T TIGR02711 365 ATILAVVAGLTLAGA 379 (549)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666656555555
No 77
>PRK10484 putative transporter; Provisional
Probab=97.96 E-value=0.037 Score=58.28 Aligned_cols=296 Identities=11% Similarity=0.003 Sum_probs=140.0
Q ss_pred cccCCHhHHHHHHhhhhhhhhhhhccHHhHHhccChHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHhHHHHhchh
Q 011037 76 QKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDF 155 (495)
Q Consensus 76 ~r~l~~~~~~~l~~~~~ig~g~~~~~~~~~~~~~G~~~~~~~li~~~~~~~~~~~~ael~s~~P~~Gg~y~~~~~~~g~~ 155 (495)
.|++++|-..+-..++.++...+...+..... .|.......+...+...+.++.++.--++. ..-..++|.++.+|+.
T Consensus 37 gR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~-~G~~~~~~~~~~~~~~~~~~~~~~p~~~r~-~~~T~~e~l~~Ryg~~ 114 (523)
T PRK10484 37 GRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYA-SGMSVMAWEVTAAIALIILALIFLPRYLKS-GITTIPDFLEERYDKT 114 (523)
T ss_pred CCCCchHHHHHHHHHHHhhHHHHhcchHHHHH-hCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCccHHHHHHHhcCch
Confidence 68999998777666666665555554433333 565432111122222333444444333332 2235788999999987
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHH--HHHHHHHHHhhhhhhhH
Q 011037 156 VAYIAAGNILLEAVVG-AAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVL--ILLVCNGIAMSGTRRSS 232 (495)
Q Consensus 156 ~g~~~g~~~~l~~~~~-~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~g~~~~~ 232 (495)
.....+....+.+... .+......+..+...++ .. ... +.+.+. ...+.++ .++...+...-|.|...
T Consensus 115 ~~~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~-~~-~~~-----gi~~~~--~~~~~~~~~~~i~~~Yt~~GGl~aV~ 185 (523)
T PRK10484 115 TRRIVSILFLIGYVVSFLPIVLYSGALALNSLFH-VS-ELL-----GISYGA--AIWLLVWLIGIIGAIYAVFGGLKAVA 185 (523)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ch-hhc-----CCcHHH--HHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence 6666665555554433 22222223333333221 00 000 111110 1111111 12334455556888777
Q ss_pred HHHHHHHHHHHHHHHHHHHhheec---------------cccCCCCCCCC----CChhhHHHHHHHH-HHHhhchhHHHH
Q 011037 233 WLNWISSIVSSCVIVFVIIVGFVH---------------GKTTNLDPFLP----YGTEGVFEAAAVV-YWSYTGFDMVAT 292 (495)
Q Consensus 233 ~~~~~~~~~~l~~~~~~~i~~~~~---------------~~~~~~~~~~~----~~~~~~~~~~~~~-~~~f~G~e~~~~ 292 (495)
+...+=.++.++..+++.+..+.. .+++.+..+.+ ..+..++.+.... ++.+.+-....+
T Consensus 186 ~TD~iQ~vim~i~~iiv~~~~l~~~g~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~q 265 (523)
T PRK10484 186 VSDTINGIGLLIGGLLVPVFGLIALGDGSFMQGLEQLTTVHPEKLNSIGGATDPVPFPTLFTGLILVNLFYWCTNQSIVQ 265 (523)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCccHHhHHHHHhhcCchhhcccCCCCCCCcHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 776666655555433332221111 01111111111 1233333333222 122222223333
Q ss_pred hhhhhcCCCCchhHHHHHHHHHHHHHHHHHHH---HHHHhccccccccccHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Q 011037 293 MAEETKKPSRDIPIGLVGSMCMITAVYCLMAL---ALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSL 369 (495)
Q Consensus 293 ~a~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~---~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 369 (495)
-.=-.||+ |+..|+..++.....+.++...+ ......|++..+.+..+.....+..++++..++..+++.+.+++.
T Consensus 266 R~~aak~~-k~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~~~~~~d~~~p~~~~~~lp~~l~Gl~~a~ilAA~mST~ 344 (523)
T PRK10484 266 RALGAKNL-AEGQKGALLAAFFKLLGPLILVLPGIIAFHLYGDGLPNADMAYPTLVNDVLPVPLVGFFAAVLFGAILSTF 344 (523)
T ss_pred HHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCChhhHHHHHHHHHcchhHHHHHHHHHHHHHHHHH
Confidence 33445664 66778887776554444333222 112223332222344566666666777777788888888888888
Q ss_pred HHHhhchhHHHHHHHhc
Q 011037 370 LVGSLGQARYTTQIARA 386 (495)
Q Consensus 370 ~~~~~~~sR~l~~~ard 386 (495)
.+.+.+.|-. .+||
T Consensus 345 ~s~l~s~st~---~t~D 358 (523)
T PRK10484 345 NGFLNSASTL---FSLD 358 (523)
T ss_pred HHHHHHHHHH---HHHH
Confidence 7777766554 3455
No 78
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=97.95 E-value=0.029 Score=59.48 Aligned_cols=148 Identities=10% Similarity=0.031 Sum_probs=88.1
Q ss_pred cccCCHhHHHHHHhhhhhhhhhhhccHHhHHhccChHH---HHHHHHHHHHHHHHHHHHhhhhhccccccchhHhHHHHh
Q 011037 76 QKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAI---VLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVEL 152 (495)
Q Consensus 76 ~r~l~~~~~~~l~~~~~ig~g~~~~~~~~~~~~~G~~~---~~~~li~~~~~~~~~~~~ael~s~~P~~Gg~y~~~~~~~ 152 (495)
.|++++|-......++.++...+...+..... .|... .+++.++. ...++.+++.-++.. .-..++|.++.|
T Consensus 31 Gr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~-~G~~~~~~~~g~~~~~---~~~~~~~~p~~rr~~-~~T~~e~l~~Rf 105 (552)
T TIGR03648 31 GRGVPPVANGMATAADWMSAASFISMAGLIAF-LGYDGLAYLMGWTGGY---VLLALLLAPYLRKFG-KYTVPDFIGDRY 105 (552)
T ss_pred CCCCchHHHHHHHHHHHHhHHHHHHHHHHHHH-hChHHHHHHHHHHHHH---HHHHHHHHHHHHHCC-CccHHHHHHHHh
Confidence 68999998877777776665555544333333 45432 22233322 234456666666664 336899999999
Q ss_pred ch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhh
Q 011037 153 GD-FVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRS 231 (495)
Q Consensus 153 g~-~~g~~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~ 231 (495)
|+ ....+.+....+..+...+......+..+..+.+ . +. ...+.+..++.+.+...-|.|..
T Consensus 106 ~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~g-i------------~~----~~~iii~~~i~~iYt~~GG~~aV 168 (552)
T TIGR03648 106 YSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLE-V------------DF----ETGVFIGMAIVFFYAVLGGMKGV 168 (552)
T ss_pred CCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-C------------CH----HHHHHHHHHHHHHHHHhhhHHHH
Confidence 84 4677777777777777777777777777777655 1 11 11222223334455555678877
Q ss_pred HHHHHHHHHHHHHH
Q 011037 232 SWLNWISSIVSSCV 245 (495)
Q Consensus 232 ~~~~~~~~~~~l~~ 245 (495)
.+...+=.++.++.
T Consensus 169 ~~TD~iQ~iim~ig 182 (552)
T TIGR03648 169 TWTQVAQYIVLIVA 182 (552)
T ss_pred HHHHHHHHHHHHHH
Confidence 77666655555443
No 79
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=97.92 E-value=0.026 Score=56.89 Aligned_cols=273 Identities=10% Similarity=0.050 Sum_probs=140.0
Q ss_pred hhhhhhhhhhccHHhHHhccChH---HHHHHHHHHHHHHHHHHHHhhhhhccccccchhHhHHHHhchhHHHHHHHHHHH
Q 011037 90 GSVVGSGIFVITGQEAKKHAGPA---IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNILL 166 (495)
Q Consensus 90 ~~~ig~g~~~~~~~~~~~~~G~~---~~~~~li~~~~~~~~~~~~ael~s~~P~~Gg~y~~~~~~~g~~~g~~~g~~~~l 166 (495)
+.-.|.|-+.-|+..-.. +|.. +.+++++.++..=+.+..-. -.+||.+.=..+..||+.|.+......+
T Consensus 19 amFFGAGNLIFPp~LG~~-aG~~~~~a~~GF~iT~VglPlLgiiav------a~~~g~~~~l~~rv~~~f~~~f~~~i~l 91 (439)
T PRK15433 19 ALFVGAGNIIFPPMVGLQ-AGEHVWTAAFGFLITAVGLPVLTVVAL------AKVGGGVDSLSTPIGKVAGVLLATVCYL 91 (439)
T ss_pred HHHhcCcchhccHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHH------hhcCCCHHHHhhhcchHHHHHHHHHHHH
Confidence 333688887777765555 7764 56667666665433322221 1233444445555688777666433322
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCccccccc-ccccCCCCCchhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Q 011037 167 EAVVGAAGLARSWSSYLASMIDSNNSDLLRFK-VDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCV 245 (495)
Q Consensus 167 ~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~l~~ 245 (495)
.--.. -......+. ++... .|-.+.+.....+..+++..+..++.++.-|..-++-.+++.+.++.
T Consensus 92 ~IGP~-~aiPRtaav------------sfEm~i~p~~~~~~~~~~ifs~iFF~i~~~l~l~p~klvd~iGK~LTP~LL~~ 158 (439)
T PRK15433 92 AVGPL-FATPRTATV------------SFEVGIAPLTGDSALPLFIYSLVYFAIVILVSLYPGKLLDTVGNFLAPLKIIA 158 (439)
T ss_pred HHhhc-cccCCcccc------------chhheeeccCCcccHHHHHHHHHHHHHHHHHHcChhhHHHHhHHHHHHHHHHH
Confidence 21100 000011000 01000 01112111123457788888899999999999999999999999998
Q ss_pred HHHHHHhheeccc--cCCC-CCCCCCC-hhhHHHHH----HHHHHHhhchhHHHHhhhhhcCCCCchhHHHHHHHHH---
Q 011037 246 IVFVIIVGFVHGK--TTNL-DPFLPYG-TEGVFEAA----AVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCM--- 314 (495)
Q Consensus 246 ~~~~~i~~~~~~~--~~~~-~~~~~~~-~~~~~~~~----~~~~~~f~G~e~~~~~a~E~k~p~k~~p~ai~~~~~~--- 314 (495)
++++++.++.+.. .... ..+..+. ..|+..|- ..+...|...-.-+--....||+ |.+.|....+-++
T Consensus 159 l~~lii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMDalaal~Fg~iii~~i~~~G~~~~-~~~~k~t~~ag~ia~~ 237 (439)
T PRK15433 159 LVILSVAAIVWPAGSISTATEAYQNAAFSNGFVNGYLTMDTLGAMVFGIVIVNAARSRGVTEA-RLLTRYTVWAGLMAGV 237 (439)
T ss_pred HHHHHHHHHhcCCCCCCCcchhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHHHHH
Confidence 8888888777521 1111 1110110 11222110 11222233322222233345554 3344444443333
Q ss_pred -HHHHHHHHHHHHHHhcc-ccccccc-cHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHH
Q 011037 315 -ITAVYCLMALALTMMVK-YTEIDMN-AAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQI 383 (495)
Q Consensus 315 -~~~~y~~~~~~~~~~~~-~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~~~ 383 (495)
..++|....+.-....+ .++..+. +-........-++++..++.+.+.++++++..+..++.++.....
T Consensus 238 ~L~~vY~gL~~lGa~s~~~~~~~~~g~~il~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~ 309 (439)
T PRK15433 238 GLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQY 309 (439)
T ss_pred HHHHHHHHHHHHhcCCcccccCCCcHhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444433221111 1111111 222334445556888999999999999999999998888875443
No 80
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=97.90 E-value=0.027 Score=56.22 Aligned_cols=251 Identities=15% Similarity=0.155 Sum_probs=125.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhhhhhccc-c-ccchhHhHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011037 110 GPAIVLSYLASGLSALLSAFCYTEFAVEIP-V-AGGSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMI 187 (495)
Q Consensus 110 G~~~~~~~li~~~~~~~~~~~~ael~s~~P-~-~Gg~y~~~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~l~~~~ 187 (495)
|-..+|..++ .....+.+-|++.++- . .-+..+-.++.+||.+++.......+........+..+.+.-++.+.
T Consensus 12 Gy~Llw~lll----~~~~~~~~q~~~~R~~~~Tg~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al~ll~ 87 (358)
T PF01566_consen 12 GYSLLWVLLL----SNLLKYVFQEMAARLGIVTGKGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIALNLLF 87 (358)
T ss_pred CHHHHHHHHH----HHHHHHHHHHHHHHHhhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4444444444 4445556666666666 2 23567777888999998888887777777776767666666655544
Q ss_pred ccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhee-ccccCC-CCCC
Q 011037 188 DSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFV-HGKTTN-LDPF 265 (495)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~-~~~~~~-~~~~ 265 (495)
+ .|. .....+..+....+.+...+.+.+++.++..+..+..+.+.+..+. ..++.. ..++
T Consensus 88 g-------------~~~-----~~~~~~~~~~~~~ll~~~~~~y~~~E~~~~~lv~~m~l~f~~~~~~~~p~~~~~~~g~ 149 (358)
T PF01566_consen 88 G-------------IPL-----WIWVLLVAVIAILLLWLSSGGYRRLERILKVLVAVMVLAFLIAAFIVHPDWGEVARGL 149 (358)
T ss_pred C-------------CCc-----HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHhhhc
Confidence 3 111 1233333333333333224456667776666665554444433332 222111 1122
Q ss_pred C----CCChhhHHHHHHHHHHHhhchhHHHHhh--hh-hcCCC---Cc--hhHHHHHHHHHHHHHHHHHHHHHH----Hh
Q 011037 266 L----PYGTEGVFEAAAVVYWSYTGFDMVATMA--EE-TKKPS---RD--IPIGLVGSMCMITAVYCLMALALT----MM 329 (495)
Q Consensus 266 ~----~~~~~~~~~~~~~~~~~f~G~e~~~~~a--~E-~k~p~---k~--~p~ai~~~~~~~~~~y~~~~~~~~----~~ 329 (495)
. |. ...+...+...-.....++...+-+ .| -.+++ ++ .+ ....=..+..++..+.+.++. ..
T Consensus 150 ~~P~~p~-~~~~~~~valiGttv~p~~lf~~s~~~~~k~~~~~~~~~~~~l~-~~~~D~~~g~~~~~li~~ai~i~~A~~ 227 (358)
T PF01566_consen 150 VVPSIPG-PGSLLFAVALIGTTVMPHNLFLHSSLVQEKGWTGNRSRPDEALK-YARFDTIIGMIVSFLINVAILIVAAAV 227 (358)
T ss_pred cCCCCcc-hhHHHHHHHHHHHhhhHHHHHHHHHHhhhcccCCCcchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 22 1222222222222233333322222 22 21221 11 22 222222222222222222211 11
Q ss_pred c-cc-cccccccHHHHHHHHhCc-hHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHH
Q 011037 330 V-KY-TEIDMNAAYSIAFRQIGM-NWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIA 384 (495)
Q Consensus 330 ~-~~-~~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~~~a 384 (495)
. +. .+..+.+...+.++..-+ ++...++.++++.+.+++..+...+.++.+.+.-
T Consensus 228 l~~~~~~~~~~~~~~~~L~~~~G~~~a~~lF~igl~~a~fss~i~~~~~~~~~~~~~~ 285 (358)
T PF01566_consen 228 LYPGGSEVETAAQAAQALEPLLGSPWARYLFAIGLFAAGFSSSITATLAGAYVLADFL 285 (358)
T ss_pred hcccccchhhHHHHHHHHHHhcCchHHHHhHHHHHHHHHHhhHHHhccccceehHhhh
Confidence 1 11 122223456666776656 7999999999999999999999888888876654
No 81
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=97.85 E-value=0.03 Score=55.13 Aligned_cols=272 Identities=14% Similarity=0.188 Sum_probs=145.5
Q ss_pred HHHHhhhhhhhhhhhccHHhHHhccChH---HHHHHHHHHHHHHHHHHHHhhhhhccccccchhHhHHHHhchhHHHHHH
Q 011037 85 TWLCFGSVVGSGIFVITGQEAKKHAGPA---IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAA 161 (495)
Q Consensus 85 ~~l~~~~~ig~g~~~~~~~~~~~~~G~~---~~~~~li~~~~~~~~~~~~ael~s~~P~~Gg~y~~~~~~~g~~~g~~~g 161 (495)
=++.++...|.|-..-|+..- ..+|.. +.+++++.++..=..+..- .-..||.+.=..+..||+.|.+..
T Consensus 11 GfmLFalFFGAGNlIFPP~LG-~~aG~~~~~A~lGFllTgVglPlLgiIa------~a~~g~~~~~l~~~i~~~fg~~f~ 83 (431)
T COG1114 11 GFMLFALFFGAGNLIFPPMLG-LHAGEHVWPAILGFLLTGVGLPLLGIIA------VALYGGGVESLATRIGPWFGVLFA 83 (431)
T ss_pred HHHHHHHHhcCCCccCChhhh-hhcCccHHHHHHHHHHHHhhHHHHHHHH------hhccCCCHHHHhhhccchHHHHHH
Confidence 344445456777766666443 337764 6667777776643333222 123455555566667888877665
Q ss_pred HHHHHHHH--HHHHHH-HHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Q 011037 162 GNILLEAV--VGAAGL-ARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWIS 238 (495)
Q Consensus 162 ~~~~l~~~--~~~a~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~ 238 (495)
-...+.-- ...+=. +.+...-+....+ .++.....+..+++..+..++.+..-|..-|+-.++
T Consensus 84 ~~iyLsIGPffAiPRt~~vsfe~~i~p~~~--------------~~~~~~l~ifs~ifF~ia~~~sl~psklid~vGk~L 149 (431)
T COG1114 84 IAIYLSIGPFFAIPRTGAVSFEVGISPLLG--------------DSSLPSLFIFSVIFFAIAYLFSLNPSKLIDRVGKFL 149 (431)
T ss_pred HHHHHHhcccccCCcccchhHHHhhhcccC--------------CCcchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 43332221 111000 0011111111111 001222456778888889999999999999999999
Q ss_pred HHHHHHHHHHHHHhheeccccCC--C------CCCCCCCh-hhHHHHHHHHHHHhhchhHHHHhhhhhcCCCCchhHHHH
Q 011037 239 SIVSSCVIVFVIIVGFVHGKTTN--L------DPFLPYGT-EGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLV 309 (495)
Q Consensus 239 ~~~~l~~~~~~~i~~~~~~~~~~--~------~~~~~~~~-~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~~p~ai~ 309 (495)
+.++++.++.+.+..+.+.+..- . +++. .|+ .|....=..+..+|...-.-+.-..-.+++ |+..|-..
T Consensus 150 TPilLv~l~il~i~~~~~p~g~~~~a~~~y~~~pf~-~GfleGY~TMDaLAal~FgivIv~alk~~g~~~~-~~~~~~~~ 227 (431)
T COG1114 150 TPILLVLLLILVIAAIIPPAGPISAASGAYQSQPFS-KGFLEGYLTMDALAALAFGIVIVNALKSKGVTTK-KQIIKYTI 227 (431)
T ss_pred hHHHHHHHHHHHHHHHhCCCCCcccccHHHHhChHH-HHHhcchHHHHHHHHHHHHHHHHHHHHHhccCcH-HHHHHHHH
Confidence 99999988888887665432111 1 1111 111 122222223334454443333333334443 44555555
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccc--c--ccc--cHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhchhHH
Q 011037 310 GSMCMITAVYCLMALALTMMVKYTE--I--DMN--AAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARY 379 (495)
Q Consensus 310 ~~~~~~~~~y~~~~~~~~~~~~~~~--~--~~~--~p~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~ 379 (495)
.+-++.++.-.+.........+..+ . .++ .-+.+..++..++.+..++.+.+.++++++..+-+.+++..
T Consensus 228 ~aglIa~i~La~iY~~L~ylGa~s~~~~~~~~nG~~IL~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~aef 303 (431)
T COG1114 228 KAGLIAAILLALIYLSLFYLGATSASAAGLAANGGQILSAYSQHLFGSYGSILLGLIVFLACLTTAVGLIVACAEF 303 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHhhcccccchHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555554444444333332211 1 111 22344445566677888999999999999998888777755
No 82
>PRK09395 actP acetate permease; Provisional
Probab=97.74 E-value=0.089 Score=55.78 Aligned_cols=153 Identities=11% Similarity=0.045 Sum_probs=84.9
Q ss_pred cccCCHhHHHHHHhhhhhhhhhhhccHHhHHhccChHHHHHHHHHHHHHHH-HHHHHhhhhhccccccchhHhHHHHhc-
Q 011037 76 QKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALL-SAFCYTEFAVEIPVAGGSFSFLRVELG- 153 (495)
Q Consensus 76 ~r~l~~~~~~~l~~~~~ig~g~~~~~~~~~~~~~G~~~~~~~li~~~~~~~-~~~~~ael~s~~P~~Gg~y~~~~~~~g- 153 (495)
.|++++|.......++.++...|...+..... .|...++ +.++..+... ..+.+++--++.. .-..++|.++.||
T Consensus 68 gr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~-~G~~~~~-~~~~~~~g~~~~~~~~~~~~r~~g-~~T~~d~l~~Rygs 144 (551)
T PRK09395 68 GGGITGFQNGLAIAGDYMSAASFLGISALVFT-SGYDGLI-YSIGFLVGWPIILFLIAERLRNLG-KYTFADVASYRLKQ 144 (551)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHH-hCHHHHH-HHHHHHHHHHHHHHHHHHHHhhCC-CccHHHHHHHHcCC
Confidence 68899988766666666665555544433333 4654322 2222222222 2333333222221 2246677778898
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhhHH
Q 011037 154 DFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSW 233 (495)
Q Consensus 154 ~~~g~~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~ 233 (495)
|....+.+....+..+........+.+..+....+ . +. ...+.+..++.+.+...-|.|...+
T Consensus 145 ~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~g-i------------~~----~~~ili~~~i~~iYt~~GGm~av~~ 207 (551)
T PRK09395 145 GPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFG-L------------NY----HVAVVLVGVLMMVYVLFGGMLATTW 207 (551)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-C------------CH----HHHHHHHHHHHHHHHhhcchHHHHH
Confidence 56888888777777777777777777777776655 1 11 1122233344455556668888777
Q ss_pred HHHHHHHHHHHHHHH
Q 011037 234 LNWISSIVSSCVIVF 248 (495)
Q Consensus 234 ~~~~~~~~~l~~~~~ 248 (495)
.+.+=.++.++..++
T Consensus 208 TD~iQ~iim~~g~ii 222 (551)
T PRK09395 208 VQIIKAVLLLSGATF 222 (551)
T ss_pred HHHHHHHHHHHHHHH
Confidence 776665555554433
No 83
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=97.71 E-value=0.0058 Score=62.95 Aligned_cols=172 Identities=15% Similarity=0.113 Sum_probs=92.7
Q ss_pred ccccCCHhHHHHHHhhhhhhhhhhhccHHhHHhccChH-HHHHHHHHHHHHHHHHHHHhhhhhcccccc-chhHhHHHHh
Q 011037 75 LQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVAG-GSFSFLRVEL 152 (495)
Q Consensus 75 l~r~l~~~~~~~l~~~~~ig~g~~~~~~~~~~~~~G~~-~~~~~li~~~~~~~~~~~~ael~s~~P~~G-g~y~~~~~~~ 152 (495)
.+|+-++++.+.+=++..+....+..-.......-+.. ++++.+++.++........+.++ |+.| ......|..|
T Consensus 5 ~~R~~~~~~~~~iW~~~~~~~~~~~~G~~~~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G---~r~Gl~~~v~sR~~F 81 (440)
T PF02133_consen 5 SERTWSPWSLFWIWFGANISIATFVTGALGVALGLSFWQAILAILIGNLLGAILVALMGIIG---PRTGLPTMVLSRASF 81 (440)
T ss_dssp GG--B-HHHHHHHHCHHH-SCHHH-HHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHH---HCC---HHHHTTTTS
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhcccc---cccCCCchhcchhcc
Confidence 36788889988876665554333332222211102333 66666666665555444444444 4444 3566667899
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccccc-ccCCCCCchhHHHHHHHHHHHHHHhhhhhhh
Q 011037 153 GDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVD-CFADGFNLLDPVAVLILLVCNGIAMSGTRRS 231 (495)
Q Consensus 153 g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~ 231 (495)
|.+-+.+......+..+...+.+....++.+....+...+. +. ..| ..........+..+++.++.....+.|.|..
T Consensus 82 G~~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~g~-~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~l 159 (440)
T PF02133_consen 82 GYRGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIFGS-FL-WIGNAIIGIALPLWVCFFIFWLIQTLFAIYGMKAL 159 (440)
T ss_dssp -TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------HH-----------HHHHHHHHHHHHHHCTHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCc-ch-hhhhhhhcchhhHHHHHHHHHHHHHHHHhcCHHHH
Confidence 99888888888888888888888888888888877622110 00 000 0000000111223334455666777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 011037 232 SWLNWISSIVSSCVIVFVII 251 (495)
Q Consensus 232 ~~~~~~~~~~~l~~~~~~~i 251 (495)
.+++.+...+..+..+...+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~ 179 (440)
T PF02133_consen 160 RRLAVIAAPILLVVFIGMLI 179 (440)
T ss_dssp HHHHHCCHHHHHHHHHHHHH
T ss_pred HhHHhhhhHHHHhhhhheeE
Confidence 88888776665555444433
No 84
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=97.70 E-value=0.0026 Score=64.05 Aligned_cols=249 Identities=18% Similarity=0.149 Sum_probs=133.7
Q ss_pred cccCCHhHHHHHHhhhhhhhhhhhccHHhHHhccChH-HHHHHHHHHHHHHHHHHHHhhhhhccccccchhHhHHHHhch
Q 011037 76 QKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGD 154 (495)
Q Consensus 76 ~r~l~~~~~~~l~~~~~ig~g~~~~~~~~~~~~~G~~-~~~~~li~~~~~~~~~~~~ael~s~~P~~Gg~y~~~~~~~g~ 154 (495)
+++-+.+..+.-...++.|+|++..|. +... .|.. .++.....+++.....+.+.+.+.+.++. ....-.++.+|+
T Consensus 3 ~~~~s~~~~v~nl~~ti~GaGIl~~P~-afk~-~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~~~-ty~~l~~~~~g~ 79 (411)
T KOG1305|consen 3 SGKTSFRSAVFNLVNTIMGAGILAMPY-AFKT-AGLLLGILLIVLSAFLSLLSLYLLSKCAKKSGER-TYSSLGDLIFGK 79 (411)
T ss_pred CCccchhhhHHHHHhhhhccHHHHhHH-HHHH-hcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCC-CHHHHHHHHcCC
Confidence 455677888888888889999988765 4445 7765 66667777788888888888888888866 344444566665
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhhHHH
Q 011037 155 FVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWL 234 (495)
Q Consensus 155 ~~g~~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~ 234 (495)
..........-.. ..++..+....++.+..........++... .....+. ...+....++.-.++. +..... +.
T Consensus 80 ~g~~~~~v~~~~~-~~g~i~yliiigd~~p~~~~~~~~~~~~~~-~~~~~~~-~ill~~~~~i~pLsl~--k~l~~L-k~ 153 (411)
T KOG1305|consen 80 LGKVDAAVAVKCF-GVGMVSYLIIIGDLLPGFIRSLFLDEEGGS-HYLDRNF-LILLVLLFIILPLSLL--KNLDSL-KY 153 (411)
T ss_pred CceeeehhhHHhh-hccceEEEEEEccccchhhhhccccccccc-cccccee-EeehHHHHHHHHHHHH--HhhhhH-HH
Confidence 4411111111000 000111111111111111110010111000 0000100 0111112222222222 222222 22
Q ss_pred HHHHHHHHHHHHHHHHHhheecccc--CCCCCCCCCCh--hhHHHHHHHHHHHhhchhHHHHhhhhhcCCC-CchhHHHH
Q 011037 235 NWISSIVSSCVIVFVIIVGFVHGKT--TNLDPFLPYGT--EGVFEAAAVVYWSYTGFDMVATMAEETKKPS-RDIPIGLV 309 (495)
Q Consensus 235 ~~~~~~~~l~~~~~~~i~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~-k~~p~ai~ 309 (495)
....++..++.++.+++........ .......+++. .+++.++....++|.........-.|+|||+ |++-+...
T Consensus 154 tS~~s~~~~~~fv~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i~~v~~ 233 (411)
T KOG1305|consen 154 TSALSLASVVYFVVLVVYKYFQGPCALGRLSYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKIQRVSN 233 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCCcccccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCchHHHHHHHHH
Confidence 3333333333333333333332211 11112222332 5789999999999999999999999999997 78889999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccc
Q 011037 310 GSMCMITAVYCLMALALTMMVKYT 333 (495)
Q Consensus 310 ~~~~~~~~~y~~~~~~~~~~~~~~ 333 (495)
.+...+..+|......-+...+++
T Consensus 234 ~~~~~~~~iy~~~g~~GYL~Fg~~ 257 (411)
T KOG1305|consen 234 IAIILATLIYLLTGLFGYLTFGDL 257 (411)
T ss_pred HHHHHHHHHHHHHHHhhhheeccc
Confidence 999999999999888876666554
No 85
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=97.63 E-value=0.093 Score=52.92 Aligned_cols=244 Identities=15% Similarity=0.101 Sum_probs=132.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccccccchhHhHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCc
Q 011037 113 IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNS 192 (495)
Q Consensus 113 ~~~~~li~~~~~~~~~~~~ael~s~~P~~Gg~y~~~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~ 192 (495)
++++.+++.++........+..+.+... ......|..||.+-+.+......+..+...+.++...++.+....+...
T Consensus 31 ai~aiilG~~i~~~~~~l~~~~G~~~Gl--~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~~- 107 (386)
T TIGR02358 31 GLLAILLGHLVGVLLLSAAGVIGADTGL--SAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRLF- 107 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCc--CHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 5666666655555444444444444332 3677788899999999999988888888889998888888888765110
Q ss_pred ccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhheeccccCCCCCCCCCChhh
Q 011037 193 DLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLDPFLPYGTEG 272 (495)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 272 (495)
+... .....+++.++.......|.|...+++.+...+..+..+...+....+.+...... +.+...
T Consensus 108 ----------~~~~--~~~~~~i~~~l~~~~~~~G~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~s 173 (386)
T TIGR02358 108 ----------GEES--PMLWILIVGILVTLWLLSGPLAFVWLNNWSVWLLLIATLWLLVVVFSKADLSELWN--RAGDMS 173 (386)
T ss_pred ----------CCCc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcC--CCCCcc
Confidence 0000 11222333445666777899999999999888777766555543333332221111 111122
Q ss_pred HHHHHHHHHHH-hhchhHHHHhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccccccccHHHHHHHHhCch
Q 011037 273 VFEAAAVVYWS-YTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMN 351 (495)
Q Consensus 273 ~~~~~~~~~~~-f~G~e~~~~~a~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 351 (495)
+..+.....-. ..+....+.++...|+|+|.+ ++...+..+...+..+.-.......+.+ +|. +.....+..
T Consensus 174 ~~~~~~~~~~~~~swa~~~~DysRy~k~~~~~~-~~~~~G~~i~~~~~~~~G~~~~~a~~~~-----d~~-~~~~~~g~~ 246 (386)
T TIGR02358 174 FAVAVELVIAMPLSWLPLIADYTRFARNPRHVF-LGTVLGYFIGSCWMYFLGLAVTLATGQT-----DII-SILAGAGLG 246 (386)
T ss_pred HHHHHHHHHHHHHHHHHHccchhhhcCCCccee-hHHHHHHHHHHHHHHHHHHHHHHhcCCC-----CHH-HHHHhccHH
Confidence 33232221111 122233667777778875544 5665555555555444443333323322 233 333333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhHHHHHH
Q 011037 352 WAKYLVSVCALKGMTTSLLVGSLGQARYTTQI 383 (495)
Q Consensus 352 ~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~~~ 383 (495)
.+..+.++++..++.....++++=-+..+
T Consensus 247 ---~~~~~~~~l~~~~~n~~N~ys~~l~l~~l 275 (386)
T TIGR02358 247 ---IPALLIILLSTVTTTFMDIYSAAISTGNL 275 (386)
T ss_pred ---HHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 23334445555555555555555544444
No 86
>PRK00701 manganese transport protein MntH; Reviewed
Probab=97.57 E-value=0.12 Score=52.77 Aligned_cols=76 Identities=13% Similarity=0.044 Sum_probs=46.1
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHhhhhhccc-ccc-chhHhHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011037 109 AGPAIVLSYLASGLSALLSAFCYTEFAVEIP-VAG-GSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASM 186 (495)
Q Consensus 109 ~G~~~~~~~li~~~~~~~~~~~~ael~s~~P-~~G-g~y~~~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~l~~~ 186 (495)
-|-..+|..+++.+ ....+-|++.+.- ..| |..+-.++.+|+++++.......+........+..+.+.-++.+
T Consensus 63 ~Gy~LLW~llls~~----~~~~~Q~~~~RlgivTG~~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~e~~G~a~al~ll 138 (439)
T PRK00701 63 FGYTLLWVILLSNL----MAMLLQSLSAKLGIATGRDLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKLL 138 (439)
T ss_pred HCHHHHHHHHHHHH----HHHHHHHHHhHhhhhcCCCHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445554444444 4455566666665 344 78888899999998887765555555555555555555555444
Q ss_pred hc
Q 011037 187 ID 188 (495)
Q Consensus 187 ~~ 188 (495)
++
T Consensus 139 ~g 140 (439)
T PRK00701 139 FG 140 (439)
T ss_pred hC
Confidence 33
No 87
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=97.19 E-value=0.31 Score=48.98 Aligned_cols=243 Identities=11% Similarity=0.086 Sum_probs=125.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccccccchhHhHH-HHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 011037 113 IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLR-VELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNN 191 (495)
Q Consensus 113 ~~~~~li~~~~~~~~~~~~ael~s~~P~~Gg~y~~~~-~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~ 191 (495)
...+|..+.++ ..+..+|--+++-+- -.-++.. |.-.+...++.+....+....+......+.+..+..+++ .
T Consensus 79 Y~iG~~~Gy~i---~~fL~A~~LRk~Gky-T~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~g-v- 152 (529)
T COG4147 79 YSIGWTGGYPI---LLFLIAEYLRKLGKY-TFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLG-V- 152 (529)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHhcCCc-chHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC-C-
Confidence 34445444433 556667776666422 1333333 444566777777777777777777777777777777766 1
Q ss_pred cccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhheeccc-------------
Q 011037 192 SDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHGK------------- 258 (495)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~------------- 258 (495)
+ + ...+.++.++...+..+-|+|...+.|.+=.++.+...++..+....+.+
T Consensus 153 -----------~--~--~vgv~ig~ilm~~Yvv~GGM~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~~~~~~~~~~~~ 217 (529)
T COG4147 153 -----------P--Y--HVGVVIGGILMMVYVVLGGMKATTWVQIIQAVLLIVAALIMAIMIMWKLGGNPNPLFAEAVTV 217 (529)
T ss_pred -----------C--c--eeehhhHhHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHhhc
Confidence 1 1 11334444555566666788877777766555555544444433222111
Q ss_pred --cCCCCCCCCCCh--hhHHHHHHHHHHHhhchhHHHHhhhhhc-CC-CCchhHHHHHHHHHHHHHHHHHHHHH----HH
Q 011037 259 --TTNLDPFLPYGT--EGVFEAAAVVYWSYTGFDMVATMAEETK-KP-SRDIPIGLVGSMCMITAVYCLMALAL----TM 328 (495)
Q Consensus 259 --~~~~~~~~~~~~--~~~~~~~~~~~~~f~G~e~~~~~a~E~k-~p-~k~~p~ai~~~~~~~~~~y~~~~~~~----~~ 328 (495)
..+.....+.|. +..+..+...+--..|.-...|.--..- -| -|+..|+..|++..++.+|+..-+.- ..
T Consensus 218 ~~~~~~~~~~~pGl~~~~~i~~isl~~aLm~GTAgLPHil~RFfTvp~~k~AR~Sv~wA~~fIg~fYi~~~~ig~~A~~~ 297 (529)
T COG4147 218 HPKDDGSDIMEPGLLYKDPIDFISLGFALMVGTAGLPHILMRFFTVPDAKEARKSVFWATGFIGIFYILTPIIGAGARLL 297 (529)
T ss_pred CcccCcccccCCCCcccCHHHHHHHHHHHHHccCCCCeEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000001111111 1222223333333445555555442111 12 25667888999999999998765442 12
Q ss_pred hc--ccc------------cccc-------ccHHHHHHHHhC-chHHHHHHHHHHHHHHHHHHHHHhhch
Q 011037 329 MV--KYT------------EIDM-------NAAYSIAFRQIG-MNWAKYLVSVCALKGMTTSLLVGSLGQ 376 (495)
Q Consensus 329 ~~--~~~------------~~~~-------~~p~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~~~~~~~~ 376 (495)
+. |.. |... +...+.+...++ +++...++..+.+...++..-+...+.
T Consensus 298 v~t~~~~~p~w~~~w~~~~D~~~~gi~~~~n~a~vlaa~~i~~g~~v~g~vsAga~AtaLstaaGL~l~i 367 (529)
T COG4147 298 VGTNPVGKPAWAAKWIKTGDANGDGIGGWTNMAAVLAAPAIGGGPWVLGFVSAGAFATALSTAAGLLLVI 367 (529)
T ss_pred hccCCCCCcchhhcccccccccccccccccchHHHhhhHHhcCCceehhHHHHHHHHHHHHHHhhHHHHH
Confidence 22 111 1111 122344455666 577666777666666666555544443
No 88
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=97.14 E-value=0.41 Score=49.42 Aligned_cols=302 Identities=12% Similarity=0.078 Sum_probs=134.1
Q ss_pred ccccCCHhHHHHHHhhhhhhhhhhhcc--HHhHHhc-------cCh--------------HHHHHHHHHHHHHHHHHHHH
Q 011037 75 LQKCLTWWDLTWLCFGSVVGSGIFVIT--GQEAKKH-------AGP--------------AIVLSYLASGLSALLSAFCY 131 (495)
Q Consensus 75 l~r~l~~~~~~~l~~~~~ig~g~~~~~--~~~~~~~-------~G~--------------~~~~~~li~~~~~~~~~~~~ 131 (495)
-|.+++.++.+++.+++-+|.|+..-. ....... .+. +.+.+|.+-++..+..++.+
T Consensus 71 ~kPefS~~sW~aMlf~aGig~GivfwgvaEP~~~~~~pP~~~~p~s~~A~~~A~~~~~fHWG~~~Wa~Y~~~~l~~ay~~ 150 (485)
T PF02028_consen 71 AKPEFSTFSWFAMLFCAGIGAGIVFWGVAEPLYHYQSPPFGIEPGSPEAAEWAMAYSFFHWGFHAWAIYALVGLAIAYFF 150 (485)
T ss_dssp S--SS-HHHHHHHHHHHCSSHHHHHHHHHHHHHHHHS-STT-TTT-HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCchHHHHHHHHHHhcchhhcchhHhhHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHheee
Confidence 367799999999999888887764321 1111100 111 02345666666666777766
Q ss_pred hhhhhccccccchhHhHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhH
Q 011037 132 TEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDP 211 (495)
Q Consensus 132 ael~s~~P~~Gg~y~~~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (495)
..-......+...|....+...+.+|.+.=....++.+.+.+...-.....+..-++.. .+.+++......
T Consensus 151 y~k~~~~~~ss~l~pl~g~~~~g~~g~~ID~l~i~a~~~GvatslGlg~~qi~~gl~~~---------~Gi~~~~~~~~~ 221 (485)
T PF02028_consen 151 YNKGKPLRISSALYPLLGDRINGPLGKIIDILAIFATIFGVATSLGLGVPQISAGLSSL---------FGIPNTFGLQII 221 (485)
T ss_dssp HTS---SSGGGGCHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------CTSSSTHHHHHH
T ss_pred eecCCCCchhhhhhhhcCCcccCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH---------cCCCCchHHHHH
Confidence 66444333444555555554445566666666666665554443333333333322200 012222222333
Q ss_pred HHHHHHHHHHHHHhhh----hhhhHHHHHHHHHHHHHHHHHHHHhhee-----------ccc---c-CCCCCCCCCC-hh
Q 011037 212 VAVLILLVCNGIAMSG----TRRSSWLNWISSIVSSCVIVFVIIVGFV-----------HGK---T-TNLDPFLPYG-TE 271 (495)
Q Consensus 212 ~~~~~~~~~~~i~~~g----~~~~~~~~~~~~~~~l~~~~~~~i~~~~-----------~~~---~-~~~~~~~~~~-~~ 271 (495)
+.+++.++.+.-...| +|..++++..+....++.++++.=..+. ..+ . -+..+..+.+ |.
T Consensus 222 ii~~~~~i~~~S~~~Gl~kGIk~LS~~n~~l~~~ll~~vl~~Gpt~fil~~~~~s~G~yl~~f~~~s~~t~~~~~~~~w~ 301 (485)
T PF02028_consen 222 IIIVITVIFTISAVSGLDKGIKRLSNINVYLAFALLLFVLLFGPTVFILNLFTESIGDYLQNFFRMSLWTDPFGNSGQWP 301 (485)
T ss_dssp HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHT--TTTTTTTHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccccccCccccc
Confidence 4444444444444444 5555555555544444333322211010 000 0 0111233333 54
Q ss_pred hHHHHHHHHHHHhhchhHHHHhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHh-cccc-----cc---ccccHHH
Q 011037 272 GVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMM-VKYT-----EI---DMNAAYS 342 (495)
Q Consensus 272 ~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~-~~~~-----~~---~~~~p~~ 342 (495)
+-...+..+-|.--+--....++.=.| .|+++.-+...++...+.-.+........ ...+ +. .++++-.
T Consensus 302 ~~WTvFYwaWWiawaPfvG~FiArISk--GRTIRE~il~~~~~psl~~~~wf~ifGg~al~~~~~g~~~~~~~~~~g~~~ 379 (485)
T PF02028_consen 302 QDWTVFYWAWWIAWAPFVGLFIARISK--GRTIREFILGVLLVPSLFCFLWFSIFGGYALYLQLSGAGDLAAANEQGPEA 379 (485)
T ss_dssp HHTHHHHHHHHHHTHHHHHHHHHHCTT--TSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSS-HHHHHHH-HHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhcC--CcCHHHHHHHHHHhhHHHHHHHHHHHCchHHhhHhhhhhhHHHHhhcchhh
Confidence 444444333333223233334444334 38886666555555544433322222211 1111 11 1112222
Q ss_pred HHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHhcC
Q 011037 343 IAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAH 387 (495)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~~~ardg 387 (495)
.+++....-++..++.+..++..+....+..-+++..+-.++.+|
T Consensus 380 a~~~~l~~lP~~~i~~~~~lil~~~f~vTs~DS~~~~la~~s~~~ 424 (485)
T PF02028_consen 380 ALFAFLEQLPLSKILSILFLILIFIFFVTSADSATYVLAMLSSKG 424 (485)
T ss_dssp HHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHcCC
Confidence 222222111233455555555556666666777788888888776
No 89
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=96.75 E-value=0.77 Score=46.37 Aligned_cols=115 Identities=15% Similarity=0.109 Sum_probs=67.5
Q ss_pred HHHHHHHHHHhhhhhccc-ccc-chhHhHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccc
Q 011037 122 LSALLSAFCYTEFAVEIP-VAG-GSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKV 199 (495)
Q Consensus 122 ~~~~~~~~~~ael~s~~P-~~G-g~y~~~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~ 199 (495)
++.-+..+..-|++.+.- .+| |.-+-.++.++|++++.......+..+...-.+..+.+-.++-++.
T Consensus 55 lls~l~~~~~Q~~~arLgivTG~~laq~ir~~y~~~~~~~~~~~~~i~~~at~iae~~G~aial~ll~~----------- 123 (416)
T COG1914 55 LLSNLMAYILQELSARLGIVTGKGLAEAIRERYLPGLGILLWILAEIAGIATDIAEVAGIAIALNLLFG----------- 123 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----------
Confidence 444445555556666555 344 4677788889999988887766677777767777777766666654
Q ss_pred cccCCCCCchhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhheec
Q 011037 200 DCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVH 256 (495)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~ 256 (495)
. ...++.++..+..++...+- -..+++.+...+.++..+.+....+..
T Consensus 124 --i------p~~~g~iItav~~~iil~~~-~~r~~E~~v~~l~~~~~i~~~~~~~~~ 171 (416)
T COG1914 124 --I------PLIIGAVITAVDVLIILLLK-GYRLLERVVLILGLVLVILFVYVAFVA 171 (416)
T ss_pred --C------hHHHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 0 11334444444333333322 456667666666665555555544443
No 90
>PLN00151 potassium transporter; Provisional
Probab=96.29 E-value=0.78 Score=49.52 Aligned_cols=191 Identities=13% Similarity=0.053 Sum_probs=83.9
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhe---eccccCCCCCCCCC---------ChhhHHHH
Q 011037 209 LDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGF---VHGKTTNLDPFLPY---------GTEGVFEA 276 (495)
Q Consensus 209 ~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~---~~~~~~~~~~~~~~---------~~~~~~~~ 276 (495)
...+++++++.+..+--+|....++ .++.+.++-++.+...|+ +..++.-+..++|. +..++ ..
T Consensus 274 VV~Is~~ILv~LF~~Q~~GT~kVg~---~FgPImllWFl~i~~iGiynI~~~~p~Vl~AlnP~Y~~~Ff~~~~~~gw-~~ 349 (852)
T PLN00151 274 VVMISVAFLVILFSVQRFGTSKVGF---AFGPALALWFCSLGGIGIYNLVKYDSSVFRAFNPVYIYYFFKRNSTKAW-SA 349 (852)
T ss_pred ehhHHHHHHHHHHHHHhccchhhhh---hhccHHHHHHHHHHHHHHHHHHhcCHHHHhhhCHHHHHHHHHhCCCceE-EE
Confidence 4456677777777777677665544 455555554444444443 33333333333331 11111 12
Q ss_pred HHHHHHHhhchhHHHHhhhhhcC-CCCchhHHHHHHHHHHHHH-HHHHHHHHHHhccccccccccHHHHHHHHhCchHHH
Q 011037 277 AAVVYWSYTGFDMVATMAEETKK-PSRDIPIGLVGSMCMITAV-YCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAK 354 (495)
Q Consensus 277 ~~~~~~~f~G~e~~~~~a~E~k~-p~k~~p~ai~~~~~~~~~~-y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 354 (495)
+.-++.+++|.|+.-. ++-+ .+|.+..|-...+.=+.++ |+.-.. +..--| ++ ..+|+.. ...+++.
T Consensus 350 LGgVvLciTGaEALfA---DLGHFg~~sIqiaw~~~V~P~LlL~Y~GQaA-~L~~~p-~~--~~npFy~----svP~~~~ 418 (852)
T PLN00151 350 LGGCVLCATGSEAMFA---DLGYFSVRSIQLAFTCLVLPCLLLAYMGQAA-YLMKNP-DS--AEQIFFS----SVPSSLF 418 (852)
T ss_pred ecceeeeeccchhhhc---ccCCCCccceeeeehhhHHHHHHHHHcchHH-HHhcCc-cc--ccCcHHH----hCCchhH
Confidence 3445577889887532 3333 3355544443322222222 333222 222122 11 2234333 2223333
Q ss_pred HHHHHHHHH-HHHHHHHHHhhchhHHHHHHHhcCCCch-hhhcccCc-----cccchhHHHHHHHHHH
Q 011037 355 YLVSVCALK-GMTTSLLVGSLGQARYTTQIARAHMIPP-WHNSILEF-----KWKRMDWLCGNHCTLV 415 (495)
Q Consensus 355 ~~~~~~~~~-s~~~~~~~~~~~~sR~l~~~ardg~lP~-~~~~~~~~-----~~p~~~~i~~~~~~~~ 415 (495)
+-+.+.+.+ ++++| -+.+.++=-++.+.-+-|.+|+ +.-+.+++ +.|-.+|++...+..+
T Consensus 419 wP~~vlAtlAaIIAS-QA~ISgtFSii~Qai~Lg~fPRvkIvHTS~~~~GQIYIP~vNw~Lmv~~i~v 485 (852)
T PLN00151 419 WPVFLIANLAALIAS-RAMTTATFSCIKQSMALGCFPRLKIIHTSRKFMGQIYIPVINWFLLVMCLVV 485 (852)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCCCceEEeCCCccCCceeeHHHHHHHHHHHHhh
Confidence 323222222 22222 2333333344444456689993 23344444 2355566665444433
No 91
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=96.24 E-value=0.34 Score=48.75 Aligned_cols=302 Identities=10% Similarity=0.076 Sum_probs=137.4
Q ss_pred ccccccCCHhHHHHHHhhhhhhhhhhhccHHhHHhccCh--H-HHHHHHHHHHHHHHHHHHHhhhhhccccccchhHhHH
Q 011037 73 QPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGP--A-IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLR 149 (495)
Q Consensus 73 ~~l~r~l~~~~~~~l~~~~~ig~g~~~~~~~~~~~~~G~--~-~~~~~li~~~~~~~~~~~~ael~s~~P~~Gg~y~~~~ 149 (495)
++-+|..++|+-+.+=.+....++.+...+..+.. |. . .++.++++-++.......=+. .|..|+-..
T Consensus 50 ~~~~Rtws~~~~~~fW~~~~fnv~Tw~ia~s~l~l--GLswwq~~~tv~vG~~~~~~f~~lns~-------~G~~yhIsF 120 (572)
T KOG2466|consen 50 PPSRRTWSWWNYIAFWLADSFNVNTWMIAGSALEL--GLSWWQTWITVWVGYLFTAIFLVLNSR-------PGSDYHISF 120 (572)
T ss_pred CcccccccHHHHHHHHHhccccccceeehhhHHhc--cCCHHHHHHHHHHHHHHHHHHHHHccC-------CCcccccce
Confidence 34578899999998877777777777666666554 43 2 666666665554443333332 344444332
Q ss_pred -----HHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccC--CCCCchhHHHHHHHHHHHH
Q 011037 150 -----VELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFA--DGFNLLDPVAVLILLVCNG 222 (495)
Q Consensus 150 -----~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 222 (495)
-.||=+.+-.--..=.+..++....++...++.++-++.+...+ +....+.++ .......+..+++-++...
T Consensus 121 pv~sR~sFGiygS~~pIi~R~vma~vwYg~~awiGgecV~lmL~si~~~-~~hipntl~~~~~tt~e~i~FfIFwv~s~~ 199 (572)
T KOG2466|consen 121 PVLSRSSFGIYGSLWPIINRVVMACVWYGVNAWIGGECVQLMLKSIFKS-FSHIPNTLGKPGTTTYEFIGFFIFWVASLP 199 (572)
T ss_pred eeeeeeehhhhHhHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhh-hhcCccccCCCCCchHHHHHHHHHHHHhhh
Confidence 23332211111111122333344555555555555554432211 111111111 1112233444444444445
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHhheecccc-CCC-C-CCCCCChhhHHHHHHHHHHHhhchhHHHH----hhh
Q 011037 223 IAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHGKT-TNL-D-PFLPYGTEGVFEAAAVVYWSYTGFDMVAT----MAE 295 (495)
Q Consensus 223 i~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~-~~~-~-~~~~~~~~~~~~~~~~~~~~f~G~e~~~~----~a~ 295 (495)
..+++.....++..+-.+..-.....+.|..+.+.+- ++. . +-...+.......+......+.++..... .+.
T Consensus 200 ~~~~~p~~ir~lf~~ka~~t~fA~~g~LIw~l~kAhG~G~l~~~~st~~gs~~aWa~~~~i~~~~~~fstl~~N~pDFsR 279 (572)
T KOG2466|consen 200 FYWFPPYKIRHLFTWKAVLTPFAAFGFLIWLLKKAHGLGHLFDSKSTVSGSAHAWAFVRSIMSCIANFSTLIVNAPDFSR 279 (572)
T ss_pred eeeccHHHhhhHHHHHHhhhHHHHHHHHHHHHHhcCCccccccCCCcccccchhHHHHHHHHHHHhccchhhccCchhHh
Confidence 5566777777776666655555555555555544321 111 1 12222322222333344455555544433 334
Q ss_pred hhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcc--cccc-ccc--cHHHHHHHH-------hCchHHHHHHHHHHHH
Q 011037 296 ETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVK--YTEI-DMN--AAYSIAFRQ-------IGMNWAKYLVSVCALK 363 (495)
Q Consensus 296 E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~--~~~~-~~~--~p~~~~~~~-------~~~~~~~~~~~~~~~~ 363 (495)
-.|+|. +..++-+++..+.....-.++.+.. .+.+ ..+ +|+ +++++ .|...+..++.++..+
T Consensus 280 F~ksp~-----a~~~~Ql~alp~~~~l~~liGVlv~sa~~~iYG~~~W~Pl-dil~~~l~~~y~~G~RAgvFfi~~~f~l 353 (572)
T KOG2466|consen 280 FAKSPN-----AIWWGQLIALPLPFGLTPLIGVLVTSASKIIYGTNYWSPL-DILNQWLDTNYSAGARAGVFFIGFGFAL 353 (572)
T ss_pred hcCCCC-----ccchhhhhhhhhhhhhhhheeeEehhhhhhhhcccccCHH-HHHHHHhccccccccchhhhHHHHHHHH
Confidence 445553 3333333322222221111111111 1111 111 343 33332 2555677777788887
Q ss_pred HHHHHHHHHhhchhHHHHHHHhcCCCchhhh
Q 011037 364 GMTTSLLVGSLGQARYTTQIARAHMIPPWHN 394 (495)
Q Consensus 364 s~~~~~~~~~~~~sR~l~~~ardg~lP~~~~ 394 (495)
+.++..++.-..++ ++.--+++||++.
T Consensus 354 aql~~NISan~vaa----gnDl~~L~Pkyin 380 (572)
T KOG2466|consen 354 AQLGTNISANSVAA----GNDLSALLPKYIN 380 (572)
T ss_pred HHHhcchhcccccc----chhhHhhCcceEE
Confidence 77776555433222 2233356787665
No 92
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=94.94 E-value=5.3 Score=41.22 Aligned_cols=45 Identities=13% Similarity=0.017 Sum_probs=25.7
Q ss_pred HHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHhcC
Q 011037 343 IAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAH 387 (495)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~~~ardg 387 (495)
.+++....-++..+..+..++....-..+..-+++-++-.++..|
T Consensus 393 alf~~l~~lPl~~v~~~~~~~~i~~FfiTsaDS~s~vl~~~ss~~ 437 (537)
T COG1292 393 ALFQVLSHLPLGTLTSLLALLVIAIFFVTSADSGSYVLAMISSRG 437 (537)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhccC
Confidence 334433322334444444444444455666778888888888766
No 93
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=94.10 E-value=0.85 Score=43.91 Aligned_cols=165 Identities=10% Similarity=0.043 Sum_probs=90.7
Q ss_pred cccccCCHhHHHHHHhhhhhhhhhhhccHHhHHhccChHHHHHHHHHHHHHHHHHHHH----hhhh---hccccccchhH
Q 011037 74 PLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCY----TEFA---VEIPVAGGSFS 146 (495)
Q Consensus 74 ~l~r~l~~~~~~~l~~~~~ig~g~~~~~~~~~~~~~G~~~~~~~li~~~~~~~~~~~~----ael~---s~~P~~Gg~y~ 146 (495)
+-+.+++.|+.-.=....+=|.=+... +.++.- +|-.++.+++-.+.+...++-.+ .|=. ....... .|.
T Consensus 112 e~~~kI~a~qAaWNVTNAIQGMFivgL-P~Avlh-GGyw~i~amvg~A~vCcyTGk~Li~CLYE~~~dGevVrvRd-sYv 188 (524)
T KOG4303|consen 112 EASEKISALQAAWNVTNAIQGMFIVGL-PIAVLH-GGYWSIGAMVGVAYVCCYTGKLLIECLYENGEDGEVVRVRD-SYV 188 (524)
T ss_pred CCCCccHHHHHhhhhhhhhheeeEecc-ceeeeE-cchhHHHHHHhhhhhhhccchhhhhhhccCCCCCcEEEeeh-hHH
Confidence 345678888876544443323222222 333332 67666666655554444443333 3322 1111111 333
Q ss_pred hHHHH-hchhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHH
Q 011037 147 FLRVE-LGDFVA-YIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIA 224 (495)
Q Consensus 147 ~~~~~-~g~~~g-~~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 224 (495)
-+.+. ++|.+| ..+..+.++..+..+..+....++.+...++ +.+.+...+.++.-+.++-+.++
T Consensus 189 aIA~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP------------~~svd~~sWm~i~~a~LLpc~FL- 255 (524)
T KOG4303|consen 189 AIADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFP------------GLSVDKASWMMITSASLLPCSFL- 255 (524)
T ss_pred HHHHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCC------------CCCccccchhhhhhHHHhhhHHH-
Confidence 33343 777776 5666677777777888888878888877665 22222211224444444444443
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHhhee
Q 011037 225 MSGTRRSSWLNWISSIVSSCVIVFVIIVGFV 255 (495)
Q Consensus 225 ~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~ 255 (495)
...|.+.++..+.++-+++.=++++..++.
T Consensus 256 -k~Lk~VS~lSf~ct~sH~viN~i~v~YCLs 285 (524)
T KOG4303|consen 256 -KDLKIVSRLSFFCTISHLVINLIMVLYCLS 285 (524)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888999988888888776666665543
No 94
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=93.89 E-value=7.1 Score=38.34 Aligned_cols=243 Identities=12% Similarity=0.051 Sum_probs=131.9
Q ss_pred HHHHHHHHHHH-HHHHHhhhhhcccc------ccchhHhHHHH-hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011037 116 SYLASGLSALL-SAFCYTEFAVEIPV------AGGSFSFLRVE-LGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMI 187 (495)
Q Consensus 116 ~~li~~~~~~~-~~~~~ael~s~~P~------~Gg~y~~~~~~-~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~l~~~~ 187 (495)
+|++-..+..+ ..+++.-++.++.. +=-.-++.++. =++..-++.+....+.+...+...-.+.+..+....
T Consensus 73 gwvlLa~iqvp~~~l~lgvlgkk~~~~ar~~nAltI~D~l~~RY~s~fl~~las~~Lifff~~~m~~qfiGgarLlE~~~ 152 (473)
T COG4145 73 GWVLLAMIQVPTVWLALGVLGKKFAILAREYNALTINDLLFARYQSRFLVWLASLSLIFFFVGAMTVQFIGGARLLETAL 152 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhCCeeHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 44444444444 34444444444431 11244455444 467888999999999999999999999999999887
Q ss_pred ccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhheec-----------
Q 011037 188 DSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVH----------- 256 (495)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~----------- 256 (495)
+ . ++ ...+.+.-..+..+-.+-|.|.+...-.+=+.++++.-+++.+..+..
T Consensus 153 g-i---dY-------------~tgL~ifa~~V~iYt~fGGFRAvvltD~IQG~vmligtv~Lf~~~i~~~GG~~~av~tl 215 (473)
T COG4145 153 G-I---DY-------------TTGLLIFAVSVAIYTAFGGFRAVVLTDTIQGLVMLIGTVVLFVGVIYAGGGLSNAVETL 215 (473)
T ss_pred C-C---Cc-------------hhhHHHHHHHHHHHHhhcceeeeehHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 7 1 11 111112222233344456777766655555555555433333322211
Q ss_pred --cccCCCCCCCCCC--hhhH-HHHHHHHHHHhhchhHHHHhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHHH--HHH-
Q 011037 257 --GKTTNLDPFLPYG--TEGV-FEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALA--LTM- 328 (495)
Q Consensus 257 --~~~~~~~~~~~~~--~~~~-~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~--~~~- 328 (495)
.|++-..|..... -..+ .+--....+.-.|......-.-..|| +|.+.++++.+..+++++-+.+-.+ ...
T Consensus 216 ~~iDp~lv~P~~~~~~l~~~Fm~Sfwilv~~gvlglP~t~vr~ia~kD-skaih~gmiigt~vi~il~~gmhl~G~~gra 294 (473)
T COG4145 216 TTIDPGLVTPQGADDILDPPFMASFWILVCFGVLGLPHTAVRCIAFKD-SKAIHRGMIIGTIVIAILMLGMHLAGALGRA 294 (473)
T ss_pred HhCCccccCCCCCcccccchHHHHHHHHHHHHHhcCcHHHHHHHhccc-hhHHhcCcchHHHHHHHHHHHHHHhhhhhhh
Confidence 1111111221111 0112 22222233445555555555555677 5889999999999888887766555 222
Q ss_pred hccccccccccHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhchh
Q 011037 329 MVKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQA 377 (495)
Q Consensus 329 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~s 377 (495)
+.| |....|.....+.-+...+....++..+.+.+.+++.++.+.-.|
T Consensus 295 ViP-dlt~~D~Vip~lalkvlpp~~agifl~apmaAiMSTIds~L~~~s 342 (473)
T COG4145 295 VIP-DLTVVDLVIPTLALKVLPPFAAGIFLAAPMAAIMSTINSQLLQSS 342 (473)
T ss_pred hcC-CCCccchhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233 222234444445555556666667777777777777777655444
No 95
>PLN00150 potassium ion transporter family protein; Provisional
Probab=92.76 E-value=15 Score=40.06 Aligned_cols=191 Identities=13% Similarity=0.136 Sum_probs=85.0
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhee---ccccCCCCCCCCC---------ChhhHHHH
Q 011037 209 LDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFV---HGKTTNLDPFLPY---------GTEGVFEA 276 (495)
Q Consensus 209 ~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~---~~~~~~~~~~~~~---------~~~~~~~~ 276 (495)
...+++++++.+..+--+|.... ...++.+.++-++.+.+.|+. ..++.-+..++|. +..++ ..
T Consensus 214 Vv~is~~ILv~LF~iQ~~GT~kV---g~~FgPIm~~Wf~~i~~iGiyni~~~~p~Vl~AlnP~y~~~ff~~~~~~g~-~~ 289 (779)
T PLN00150 214 VTIISCVILVILFSLQRFGTHKV---SFLFAPIFLCWFFSLALIGCYNIIKWDKSVFLAFNPLYIVSFFIRNGRQGW-ES 289 (779)
T ss_pred ehhhHHHHHHHHHHHHhccchhh---hhhhccHHHHHHHHHHHHHHHHHHhcCHHHHhhcCHHHHHHHHHhCCCceE-EE
Confidence 34566666666666666676544 445566666555555554444 3333333333331 21221 13
Q ss_pred HHHHHHHhhchhHHHHhhhhhcC-CCCchhHHHHHHHHHHHHH-HHHHHHHHHHhccccccccccHHHHHHHHhCchHHH
Q 011037 277 AAVVYWSYTGFDMVATMAEETKK-PSRDIPIGLVGSMCMITAV-YCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAK 354 (495)
Q Consensus 277 ~~~~~~~f~G~e~~~~~a~E~k~-p~k~~p~ai~~~~~~~~~~-y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 354 (495)
+..++.+++|.|+.-. ++-+ .+|.+.++-..-+.=+.++ |+.-...+ .--| ++ ..+|+... ..+++.
T Consensus 290 LG~V~L~iTGaEALyA---DlGHFg~~~Iriaw~~~V~P~LlL~Y~GQaA~l-l~~p-~~--~~npFf~~----iP~~~~ 358 (779)
T PLN00150 290 LGGIVLCMTGTEAMFA---DLGHFTVKSMQIAFTSLVYPCLLLTYLGQAAYL-VKHM-ED--VNDPFYRS----LPKPIY 358 (779)
T ss_pred ecceeeeecchhhhhc---cccCCCccceeeeehhhHHHHHHHHHcchHHHH-hcCc-cc--ccCcHHHh----CCchhH
Confidence 3445577889887532 3332 3355544444222222222 33322222 2112 11 22344332 223333
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhHHHHHHHhcCCCch-hhhcccCc-----cccchhHHHHHHHHH
Q 011037 355 YLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPP-WHNSILEF-----KWKRMDWLCGNHCTL 414 (495)
Q Consensus 355 ~~~~~~~~~s~~~~~~~~~~~~sR~l~~~ardg~lP~-~~~~~~~~-----~~p~~~~i~~~~~~~ 414 (495)
+-+.+...++.+-+--+.+.++=-++.+.-+-|.+|+ +.-+.+++ +.|-.+|++...+..
T Consensus 359 ~P~~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvkI~hTS~~~~GQIYIP~vNw~Lmv~~i~ 424 (779)
T PLN00150 359 WPIFVLATCSAMIASQAMISATFSIVKQAMALGCFPRVKIVHTSNKVHGQVYIPEINWILMVLCLV 424 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCcccCCceeeHHHHHHHHHHHHh
Confidence 3333322222222222333333344445556689993 23344443 235556666544443
No 96
>PLN00149 potassium transporter; Provisional
Probab=92.24 E-value=20 Score=39.06 Aligned_cols=194 Identities=16% Similarity=0.159 Sum_probs=86.8
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhee---ccccCCCCCCCCC---------ChhhHHHHH
Q 011037 210 DPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFV---HGKTTNLDPFLPY---------GTEGVFEAA 277 (495)
Q Consensus 210 ~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~---~~~~~~~~~~~~~---------~~~~~~~~~ 277 (495)
..+++++++.+..+--+|... +...++.++++-++.+...|+. ..++.-+..++|. +..+ +..+
T Consensus 199 v~is~~ILv~LF~~Q~~GT~k---vg~~FgPIml~Wf~~i~~iGiyni~~~~p~Vl~AlnP~y~~~f~~~~~~~g-~~~L 274 (779)
T PLN00149 199 VPVACIILIGLFALQHYGTHR---VGFLFAPVVLTWLLCISAIGVYNIFHWNPHVYQALSPYYMYKFLKKTQRGG-WMSL 274 (779)
T ss_pred hHHHHHHHHHHHHHhccccHH---HhhhhhhHHHHHHHHHHHHHHHHHHhcCHhHhhhcCHHHHHHHHHHCCCce-eEee
Confidence 346666666666666667654 4455666666555555554444 3334333333332 1111 1234
Q ss_pred HHHHHHhhchhHHHHhhhhhcC-CCCchhHHHHHHHHHHHHH-HHHHHHHHHHhccccccccccHHHHHHHHhCchHHHH
Q 011037 278 AVVYWSYTGFDMVATMAEETKK-PSRDIPIGLVGSMCMITAV-YCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKY 355 (495)
Q Consensus 278 ~~~~~~f~G~e~~~~~a~E~k~-p~k~~p~ai~~~~~~~~~~-y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 355 (495)
.-++.+++|.|+.-. ++-+ .+|.+.+|-..-+.=+.++ |+.-.. +..--|...-+..+|+... ..+++.+
T Consensus 275 GgV~L~iTG~EALyA---DlGHF~~~~Ir~aw~~~V~P~L~L~Y~GQaA-~l~~~p~~~~~~~~pFy~~----iP~~~~~ 346 (779)
T PLN00149 275 GGILLCITGSEAMFA---DLGHFSQLSIKIAFTSLVYPSLILAYMGQAA-YLSKHHVIESDYRIGFYVS----VPEKLRW 346 (779)
T ss_pred cchhhcccchhhhhh---cccCCCccceeeeehhhHHHHHHHHhhhHHH-HHhcCcchhccccCcHHHh----CCchhHH
Confidence 445678899997532 3333 3455544444322222222 433322 2222222111112344332 2233333
Q ss_pred HHHHHHHHHHHHHHHHHhhchhHHHHHHHhcCCCch-hhhcccCc-----cccchhHHHHHHHHHH
Q 011037 356 LVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPP-WHNSILEF-----KWKRMDWLCGNHCTLV 415 (495)
Q Consensus 356 ~~~~~~~~s~~~~~~~~~~~~sR~l~~~ardg~lP~-~~~~~~~~-----~~p~~~~i~~~~~~~~ 415 (495)
-+.+.+.++.+-+--+.+.++=-++.+.-+-|.+|+ +.-+.+++ +.|-.+|++...+..+
T Consensus 347 P~~vlAtlAaIIASQA~ISg~FSii~Qa~~Lg~fPrvkIvhTS~~~~GQIYIP~vNw~Lmv~~i~v 412 (779)
T PLN00149 347 PVLVIAILAAVVGSQAIITGTFSIIKQCSALGCFPKVKIVHTSSKIHGQIYIPEINWTLMLLCLAV 412 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCcccCCceeeHHHHHHHHHHHHhh
Confidence 333322222222222333333344444556689993 23344443 2355566665444433
No 97
>PRK09950 putative transporter; Provisional
Probab=91.97 E-value=18 Score=37.78 Aligned_cols=23 Identities=9% Similarity=0.125 Sum_probs=19.0
Q ss_pred cccCCHhHHHHHHhhhhhhhhhh
Q 011037 76 QKCLTWWDLTWLCFGSVVGSGIF 98 (495)
Q Consensus 76 ~r~l~~~~~~~l~~~~~ig~g~~ 98 (495)
|.++|.++.+++.++.-+|.|+.
T Consensus 81 kPefS~~sW~aMlf~aG~G~gll 103 (506)
T PRK09950 81 KPEYSTLSWLFMFICAGLGSSTL 103 (506)
T ss_pred CCCccchhHHHHHHHHhhhhHHH
Confidence 67899999999999888777764
No 98
>PRK09928 choline transport protein BetT; Provisional
Probab=91.32 E-value=24 Score=38.04 Aligned_cols=23 Identities=9% Similarity=0.231 Sum_probs=17.7
Q ss_pred cccCCHhHHHHHHhhhhhhhhhh
Q 011037 76 QKCLTWWDLTWLCFGSVVGSGIF 98 (495)
Q Consensus 76 ~r~l~~~~~~~l~~~~~ig~g~~ 98 (495)
|.+++.++.++|.+++-+|+|+.
T Consensus 90 kPefS~~sW~aMLFaAGmGigLm 112 (679)
T PRK09928 90 KPEFSLLSWAAMLFAAGIGIDLM 112 (679)
T ss_pred CCCCCcchHHHHHHHHhhhhhhe
Confidence 56788888888888877777653
No 99
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=89.71 E-value=21 Score=37.02 Aligned_cols=104 Identities=16% Similarity=-0.001 Sum_probs=62.2
Q ss_pred CCHhHHHHHHhhhhhhhhhhhccHHhHHhccChHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHhHHHHhchhHHH
Q 011037 79 LTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAY 158 (495)
Q Consensus 79 l~~~~~~~l~~~~~ig~g~~~~~~~~~~~~~G~~~~~~~li~~~~~~~~~~~~ael~s~~P~~Gg~y~~~~~~~g~~~g~ 158 (495)
.+.+-++.--+.++.|.|..+.|-.++.. +=+.+.+..+++++++-.+-=.+.=+.|.--+.-+.-+.+++.+|+..+.
T Consensus 52 tnk~vlfGhHFaaIAGAGPivGPvlAAq~-G~Lp~~LWIl~G~VfaGaVhD~~~L~~SvR~~G~Si~~ia~~~lG~~a~~ 130 (575)
T COG1966 52 TNKWVLFGHHFASIAGAGPIVGPALAAQY-GWLPAFLWILLGCVFAGAVHDYFSLMLSVRHGGKSIGEIAGKYLGRTAKV 130 (575)
T ss_pred CCchhhhHHHHHHHhccCcchhHHHHHHh-cCcHHHHHHHHhhhhhhhhhhhhheeeeeccCCccHHHHHHHHhhhhHHH
Confidence 34455566666777899998887766554 32555555666777766654444444443333335667778888888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 011037 159 IAAGNILLEAVVGAAGLARSWSSYL 183 (495)
Q Consensus 159 ~~g~~~~l~~~~~~a~~~~~~~~~l 183 (495)
......++-.+...+..+...+..+
T Consensus 131 ~~~~~~l~iliiv~Avfa~vv~~~l 155 (575)
T COG1966 131 FFLLLALILLILVGAVFAAVIAKLL 155 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776555544444444444444433
No 100
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=89.47 E-value=31 Score=36.39 Aligned_cols=99 Identities=16% Similarity=0.173 Sum_probs=53.0
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhee-ccc--------cCCCCCCCCCChhhHHHHHHHHHHHhh-chhHH
Q 011037 221 NGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFV-HGK--------TTNLDPFLPYGTEGVFEAAAVVYWSYT-GFDMV 290 (495)
Q Consensus 221 ~~i~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~f~-G~e~~ 290 (495)
.....+|+|..+|+......+..+.++++.+-++. .+. ..++.... +..-+..++..++|++. |+...
T Consensus 192 ~~~i~kGi~~~~kv~~~~~~~p~v~l~il~ir~ltl~ga~~Gl~~~~~pd~~~l~--~~~vW~~A~~Q~ffsl~ig~G~~ 269 (523)
T PF00209_consen 192 FFGIWKGIESIGKVMYPTLLLPFVLLIILLIRSLTLPGASEGLKFLFTPDWSKLL--DPKVWIAALGQVFFSLSIGFGIM 269 (523)
T ss_dssp TTTTTTTHHHHHHHHHHHHH---HHHHHHHHHHHT-EEHHHHHHHHHSB-TTGTT--SHHHHHHHHHHHHHHTTTTSSHH
T ss_pred HHheEeccccccchhhhhhhhhhEEEEEEEEEEEcCCCCCCceEEEecCCcchhh--HHHHHHHHHHHHhhccCCCcceE
Confidence 33445788888888776654333333333332221 111 11222221 12445677778888864 77888
Q ss_pred HHhhhhhcCCCCchhHHHHHHHHHHHHHHHHH
Q 011037 291 ATMAEETKKPSRDIPIGLVGSMCMITAVYCLM 322 (495)
Q Consensus 291 ~~~a~E~k~p~k~~p~ai~~~~~~~~~~y~~~ 322 (495)
..++.-.|+ ++|++|..........+..++.
T Consensus 270 it~~Sy~~~-~~n~~~~a~~v~~~~~~~slla 300 (523)
T PF00209_consen 270 ITYGSYNKF-KNNIFRDALIVAFINTLVSLLA 300 (523)
T ss_dssp HHHHTTS-T-TS-SHHHHHHHHHHHHHHHHTT
T ss_pred EEEcCcCCC-CccccccceEEEcCchhhhHhH
Confidence 888877776 5678886666555555554443
No 101
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=88.87 E-value=22 Score=35.19 Aligned_cols=103 Identities=17% Similarity=-0.021 Sum_probs=66.7
Q ss_pred CCHhHHHHHHhhhhhhhhhhhccHHhHHhccChH-HHHHHHHHHHHHHHHHHHHhhhhhccccccchhHhHHHHhchhHH
Q 011037 79 LTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVA 157 (495)
Q Consensus 79 l~~~~~~~l~~~~~ig~g~~~~~~~~~~~~~G~~-~~~~~li~~~~~~~~~~~~ael~s~~P~~Gg~y~~~~~~~g~~~g 157 (495)
.+.|-++..-+.++.|.|....+...+. =|+. +++..++++++.-.+-=..+=+.|.=-+.-+.-+-+++.+||..+
T Consensus 52 ~~~~vlfghhf~sIAGaGPI~GPi~aa~--~GwlPa~lWI~~G~if~GaVHD~~sl~~SvR~~G~Si~~i~~~~lG~~~~ 129 (376)
T PF02554_consen 52 TNKWVLFGHHFASIAGAGPIVGPILAAQ--FGWLPALLWIVFGCIFAGAVHDYGSLMASVRHKGKSIGEIAGKYLGKRAK 129 (376)
T ss_pred CchHHhhHHHHHHHhccccchHHHHHHH--hcchHHHHHHHHccHHHHHHHHHHHHhhhhcCCCccHHHHHHHHHHHHHH
Confidence 4556677777888889998887766644 5766 666566666665554444433333333333567777889999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011037 158 YIAAGNILLEAVVGAAGLARSWSSYL 183 (495)
Q Consensus 158 ~~~g~~~~l~~~~~~a~~~~~~~~~l 183 (495)
.+..+..++.-+...+......++.+
T Consensus 130 ~lf~~f~~~~lilV~avF~~v~a~~~ 155 (376)
T PF02554_consen 130 KLFLIFIFFLLILVIAVFADVVANTF 155 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88887777766666665554444444
No 102
>PLN00148 potassium transporter; Provisional
Probab=88.81 E-value=18 Score=39.39 Aligned_cols=192 Identities=14% Similarity=0.106 Sum_probs=86.6
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhee---ccccCCCCCCCCC---------ChhhHHHH
Q 011037 209 LDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFV---HGKTTNLDPFLPY---------GTEGVFEA 276 (495)
Q Consensus 209 ~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~---~~~~~~~~~~~~~---------~~~~~~~~ 276 (495)
...+++++++.+..+--+|....+ ..++.++++-++.+...|+. ..++.-+..++|. +..++ ..
T Consensus 197 vv~is~~ILv~LF~vQ~~GT~kVg---~~FgPIm~lWf~~i~~iGiyni~~~~p~Vl~AlnP~y~~~ff~~~~~~g~-~~ 272 (785)
T PLN00148 197 LVLLACVILVGLFALQHCGTHRVA---FMFAPIVIIWLLSIGSIGLYNIIHWNPKIIHALSPYYIIKFFRVTGKDGW-IS 272 (785)
T ss_pred ehhHHHHHHHHHHHHhccccHHHH---hhhhhHHHHHHHHHHHHHHHHHHhcCHHHhhhcCHHHHHHHHHhCCCceE-Ee
Confidence 345666666666666667765544 45566665555555544443 3334333333331 22221 13
Q ss_pred HHHHHHHhhchhHHHHhhhhhcC-CCCchhHHHHHHHHHHHHH-HHHHHHHHHHhccccccccccHHHHHHHHhCchHHH
Q 011037 277 AAVVYWSYTGFDMVATMAEETKK-PSRDIPIGLVGSMCMITAV-YCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAK 354 (495)
Q Consensus 277 ~~~~~~~f~G~e~~~~~a~E~k~-p~k~~p~ai~~~~~~~~~~-y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 354 (495)
+..++.+++|.|+.-. ++-+ .+|.+.++-...+.=+.++ |+.-.. +..--| ++ ..+|+... -.+++.
T Consensus 273 LGgV~L~iTGaEALyA---DlGHFg~~~Iriaw~~~V~P~L~L~Y~GQaA-~ll~~p-~~--~~npFf~~----iP~~~~ 341 (785)
T PLN00148 273 LGGILLSITGTEAMFA---DLGHFTAASIRLAFATVIYPCLVVQYMGQAA-FLSKNI-PS--IPNSFYDS----IPDPVF 341 (785)
T ss_pred ecchheeccchhhhhh---hccCCCccceEEeeeehHHHHHHHHHcchHH-HHhcCc-cc--ccCcHHHh----CCchhH
Confidence 4445678899997532 3332 3355555444332222222 433322 222122 21 23454332 223333
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhHHHHHHHhcCCCch-hhhcccCc-----cccchhHHHHHHHHHH
Q 011037 355 YLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPP-WHNSILEF-----KWKRMDWLCGNHCTLV 415 (495)
Q Consensus 355 ~~~~~~~~~s~~~~~~~~~~~~sR~l~~~ardg~lP~-~~~~~~~~-----~~p~~~~i~~~~~~~~ 415 (495)
+-+.+...++.+-+--+.+.++=-++.+.-+-|.+|+ +.-+.+++ +.|-.+|++...+..+
T Consensus 342 ~P~~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvkIvhTS~~~~GQIYIP~vNw~Lmv~~i~v 408 (785)
T PLN00148 342 WPVFVIATLAAIVGSQAVITATFSIVKQCHALGCFPRVKVVHTSKHIYGQIYIPEINWILMILTLAV 408 (785)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccCCceeeHHHHHHHHHHHHHh
Confidence 3333322222222222333333344444556689993 23344444 2355566665444433
No 103
>TIGR00794 kup potassium uptake protein. Proteins of the KUP family include the KUP (TrkD) protein of E. coli, a partially sequenced ORF from Lactococcus lactis, high affinity K+ uptake systems (Hak1) of the yeast Debaryomyces occidentalis as well as the fungus, Neurospora crassa, and several homologues in plants. While the E. coli KUP protein is assumed to be a secondary transporter, and uptake is blocked by protonophores such as CCCP (but not arsenate), the energy coupling mechanism has not been defined. However, the N. crassa protein has been shown to be a K+:H+ symporter, establishing that the KUP family consists of secondary carriers. The plant high affinity (20mM) K+ transporter can complement K+ uptake defects in E. coli.
Probab=87.69 E-value=14 Score=39.72 Aligned_cols=190 Identities=17% Similarity=0.155 Sum_probs=86.5
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhheecc---ccCCCCCCCC---------CChhhHHHH
Q 011037 209 LDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHG---KTTNLDPFLP---------YGTEGVFEA 276 (495)
Q Consensus 209 ~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~---~~~~~~~~~~---------~~~~~~~~~ 276 (495)
...+++++++.+..+--+|... +...++.++++-++.+.+.|+... ++.-+..++| ++..++ ..
T Consensus 168 Vv~it~~ILv~LF~iQ~~GT~k---vg~~FgPim~vWF~~l~~~Gi~~I~~~~P~Vl~AlnP~ya~~f~~~~~~~~~-~~ 243 (688)
T TIGR00794 168 VVPISCIILVLLFLIQRFGTAK---VGFTFAPIILVWLLLLAGIGIYNIVKFNPEVLKALSPYYAVQFFIEYGTVGW-VS 243 (688)
T ss_pred ehhHHHHHHHHHHHHhccccHH---HhhhhhhHHHHHHHHHHHHHHHHHHhcCHHHHhHhCHHHHHHHHHHCCCcee-ee
Confidence 3456666666666666667654 445566666665555555555432 3332333333 222222 23
Q ss_pred HHHHHHHhhchhHHHHhhhhhcC-CCCchhHHHHHHHHHHHHH-HHHHHHHHHHhccccccccccHHHHHHHHhCchHHH
Q 011037 277 AAVVYWSYTGFDMVATMAEETKK-PSRDIPIGLVGSMCMITAV-YCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAK 354 (495)
Q Consensus 277 ~~~~~~~f~G~e~~~~~a~E~k~-p~k~~p~ai~~~~~~~~~~-y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 354 (495)
+...+.+.+|-|+.-. ++-+ -+|++.++-..-+.-+.++ |+.-...+ ..-| +. ..+|+... ..+|+.
T Consensus 244 LG~V~L~iTGaEALyA---DmGHFg~~~Ir~aw~~~V~P~L~LnY~GQgA~l-l~~p-~~--~~NpFf~~----~P~~~~ 312 (688)
T TIGR00794 244 LGGVVLSITGVEAMFA---DLGHFGKLPIQLAWFTFVYPSLILCYIGQAAYL-SKHP-EA--IKNPFFLS----IPDWAL 312 (688)
T ss_pred ccchhheeccHhhhhc---ccCCCCcccceeehHHHHHHHHHHHHcchHHHH-hcCc-ch--hcCcHHHh----CchHHH
Confidence 4455678899987532 3333 2355544443222222222 33322222 1112 11 13454433 234443
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhHHHHHHHhcCCCch-hhhcccCc-----cccchhHHHHHHHH
Q 011037 355 YLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPP-WHNSILEF-----KWKRMDWLCGNHCT 413 (495)
Q Consensus 355 ~~~~~~~~~s~~~~~~~~~~~~sR~l~~~ardg~lP~-~~~~~~~~-----~~p~~~~i~~~~~~ 413 (495)
+.+.+...++..-+--+.+.++=-+..+.-+-|.+|+ ...+.+++ +.|-.+|++...+.
T Consensus 313 ~p~~vlAtlAtIIASQA~IsG~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYiP~vNw~Lmv~~i 377 (688)
T TIGR00794 313 WPLFIIATLAAIIASQAVISGVFSITSQAVRLGCFPRVKIIHTSEKYHGQIYIPFVNWLLMLGVI 377 (688)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccCCceeeHHHHHHHHHHHH
Confidence 3333332222222222333333344455556799994 23344444 23555666554433
No 104
>KOG3659 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=87.63 E-value=40 Score=35.44 Aligned_cols=115 Identities=17% Similarity=0.237 Sum_probs=58.2
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhheec--cccCCCCCCCCC-----ChhhHHHHHHHHHH
Q 011037 210 DPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVH--GKTTNLDPFLPY-----GTEGVFEAAAVVYW 282 (495)
Q Consensus 210 ~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~--~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 282 (495)
.+...++.+++.+..+.|+|..+|+..+...+-.+++.++.+-+.-. .+..+..-..|. ....+.-+...+++
T Consensus 255 ~lc~~lv~~liyf~~~kG~kssGKvv~vtallPy~Il~illirgl~l~ga~~g~~y~~~~~~~kl~~~~vW~dAAtqiff 334 (629)
T KOG3659|consen 255 ALCLVLVWLLIYFSLWKGVKSSGKVVWVTALLPYIILLILLVRGLTLPGAKNGIQYYLTPDIEKLKEPSVWIDAATQIFF 334 (629)
T ss_pred HHHHHHHHHHHHHHHhccccccceEEeeehhhHHHHHHHHHHhcccccccccchhheecccHHHHhhHHHHHHHHHHHHh
Confidence 34555556667788889999999986665554433333333333311 111111111111 12334445555555
Q ss_pred H-hhchhHHHHhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 011037 283 S-YTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALA 325 (495)
Q Consensus 283 ~-f~G~e~~~~~a~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~ 325 (495)
+ ..|+.....++.-.|--.+-..-|++.+. +..+.+++..+.
T Consensus 335 slg~GfG~L~AfaSyn~F~NNc~rDAll~S~-in~~ts~~sgfv 377 (629)
T KOG3659|consen 335 SLGPGFGVLIAFASYNKFHNNCYRDALLTSI-INCLTSFLSGFV 377 (629)
T ss_pred hcCccchhhhhhhhhcccccchhhhhHHHHH-HHHHHHHHHHHH
Confidence 5 45777777777666543333344444444 444444444443
No 105
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=86.24 E-value=40 Score=34.01 Aligned_cols=42 Identities=17% Similarity=0.102 Sum_probs=29.6
Q ss_pred HHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhchhHHHHH
Q 011037 341 YSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQ 382 (495)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~~ 382 (495)
..+.++..-+++...++.++++.+-+++.++..++..=+...
T Consensus 282 ~~~~L~p~~G~~a~~lF~igLlaAG~sS~it~~~ag~~v~~g 323 (390)
T TIGR01197 282 IGVLLGCLFSPAAGYIFAVGLLAAGQSSGMVGTYSGQFVMEG 323 (390)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 344455555678888999999999888888887755544443
No 106
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=83.18 E-value=63 Score=33.75 Aligned_cols=23 Identities=9% Similarity=0.231 Sum_probs=19.1
Q ss_pred cccCCHhHHHHHHhhhhhhhhhh
Q 011037 76 QKCLTWWDLTWLCFGSVVGSGIF 98 (495)
Q Consensus 76 ~r~l~~~~~~~l~~~~~ig~g~~ 98 (495)
|.+++.++.+++.+++-+|+|+.
T Consensus 83 kPefs~~sW~aMlf~aG~G~gll 105 (504)
T PRK03356 83 KPEFSTASWIFMMFASCTSAAVL 105 (504)
T ss_pred CCCccchHHHHHHHHHhhhhhhh
Confidence 67899999999999888777764
No 107
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members.; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane
Probab=82.72 E-value=67 Score=33.71 Aligned_cols=191 Identities=15% Similarity=0.139 Sum_probs=89.8
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhheeccc--cCCCCCCCC---------CChhhHHHHH
Q 011037 209 LDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHGK--TTNLDPFLP---------YGTEGVFEAA 277 (495)
Q Consensus 209 ~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~--~~~~~~~~~---------~~~~~~~~~~ 277 (495)
...+++++++.+..+--+|....+++ ++.++++=++.+.+.|+...- ++-+..++| +++.++. .+
T Consensus 132 Vv~it~~ILv~LF~iQ~~GT~~ig~~---FgPim~~WF~~l~~~G~~~I~~~p~Vl~A~nP~yai~f~~~~~~~~~~-~L 207 (534)
T PF02705_consen 132 VVPITIAILVGLFAIQRFGTAKIGKL---FGPIMLLWFLTLGVLGLYNIIQHPEVLKALNPYYAIRFFIRNGWIGFF-VL 207 (534)
T ss_pred ehhHHHHHHHHHHHHHhhhhhHHHHH---HhHHHHHHHHHHHHHHHHHHhhCHHHHHHhCHHHHHHHHHHcCCchhh-hc
Confidence 44566677777777776776655554 666666666555555554321 211112222 2333332 45
Q ss_pred HHHHHHhhchhHHHHhhhhhcCC-CCchhHHHHHHHHHHHHH-HHHHHHHHHHhccccccccccHHHHHHHHhCchHHHH
Q 011037 278 AVVYWSYTGFDMVATMAEETKKP-SRDIPIGLVGSMCMITAV-YCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKY 355 (495)
Q Consensus 278 ~~~~~~f~G~e~~~~~a~E~k~p-~k~~p~ai~~~~~~~~~~-y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 355 (495)
...+.+.+|-|+.-. ++-+= +|++.++-..-+.-+.++ |+.-.. ....-| + ..++|+....- +++.+
T Consensus 208 G~V~L~~TGaEALyA---DmGHfg~~~Ir~aw~~~V~PaL~LnY~GQgA-~ll~~p-~--~~~npFf~~~P----~~~~~ 276 (534)
T PF02705_consen 208 GAVFLCVTGAEALYA---DMGHFGRKPIRIAWFFLVFPALLLNYFGQGA-LLLSHP-E--AVSNPFFLLIP----EWLLW 276 (534)
T ss_pred chHHHHHhhHHHHHh---hhccccchhhhhhHHHHHHHHHHHHHccHHH-HHHcCc-c--hhhhHHHHHhH----HHHHH
Confidence 566788999998653 45443 355544444322222222 322222 211112 1 12345544332 34333
Q ss_pred HHHHHHHHHHHHHHHHHhhchhHHHHHHHhcCCCch-hhhcccCcc-----ccchhHHHHHHHHH
Q 011037 356 LVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPP-WHNSILEFK-----WKRMDWLCGNHCTL 414 (495)
Q Consensus 356 ~~~~~~~~s~~~~~~~~~~~~sR~l~~~ardg~lP~-~~~~~~~~~-----~p~~~~i~~~~~~~ 414 (495)
-+.+...++..-+.-+.+.++=-+..+.-+-|.+|+ ...+.+++. .|..+|++...+..
T Consensus 277 p~~ilAtlAtIIASQA~Isg~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYIP~vNw~L~i~~i~ 341 (534)
T PF02705_consen 277 PMVILATLATIIASQAVISGAFSLTRQAIQLGYFPRLKIVHTSEKEEGQIYIPEVNWLLMIGVIA 341 (534)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEECCcccCCcEechHHHHHHHHHHHh
Confidence 333332222222223333444445555667799994 223334332 35556665544433
No 108
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=73.62 E-value=1.2e+02 Score=31.40 Aligned_cols=22 Identities=14% Similarity=0.222 Sum_probs=16.6
Q ss_pred cccCCHhHHHHHHhhhhhhhhh
Q 011037 76 QKCLTWWDLTWLCFGSVVGSGI 97 (495)
Q Consensus 76 ~r~l~~~~~~~l~~~~~ig~g~ 97 (495)
|.+++.++.+++.+++-+|.|+
T Consensus 34 kPefS~~sW~aMlf~aG~G~gl 55 (453)
T TIGR00842 34 KPEFSTLSWLAMLFAAGMGIGL 55 (453)
T ss_pred CCCCcchHHHHHHHHHhhhhhh
Confidence 5678888888888877777665
No 109
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=70.62 E-value=55 Score=34.67 Aligned_cols=222 Identities=13% Similarity=0.126 Sum_probs=102.2
Q ss_pred cchhHhHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHH-H
Q 011037 142 GGSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLV-C 220 (495)
Q Consensus 142 Gg~y~~~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 220 (495)
...|+|.+..|++.........+.+..........+.-+..++...+ .+ ..+..+++..+ .
T Consensus 108 ~~~~eYl~~Rf~~~~r~l~~l~f~l~~~~~l~v~~y~pal~~~qvtg-~~-----------------~~l~~~~~~~ic~ 169 (585)
T KOG2349|consen 108 TTMYEYLEKRFGGRVRYLATLSFILMIFLYLPVDMYAPALAINQVTG-IN-----------------LYLIVVILGLICV 169 (585)
T ss_pred eehhHHHHHHhcccchhhHHHHHHHHHHhheeeeEeehHHHHHHHhc-cC-----------------ceeehHHHHHHHH
Confidence 36899999999988555555555555555555444444444444433 00 01111112222 2
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhheeccc-------------cCCCC-CCC--C----CChhhHHHHHHHH
Q 011037 221 NGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHGK-------------TTNLD-PFL--P----YGTEGVFEAAAVV 280 (495)
Q Consensus 221 ~~i~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~-------------~~~~~-~~~--~----~~~~~~~~~~~~~ 280 (495)
.+-..-|+|.+-+.-.+=+.+++.....+++.+..... ..|.. .+. | .-|. ++.+....
T Consensus 170 ~YT~~GGlkaVi~TDv~Q~~iml~~~~~v~i~gt~~vGG~~~V~e~a~~~gr~~~~~~~~~dp~vr~t~W~-~~~Gg~~~ 248 (585)
T KOG2349|consen 170 FYTALGGLKAVIWTDVVQTVIMLGGVLAVMIKGTMKVGGLGRVLEKAFDAGRVNFVAEFLRDPTVRHTPWS-LLFGGTIM 248 (585)
T ss_pred HHHHhcCeeEEEEhhHHHHHHHHHHHHHHhheeehhcCcccceeeecccCCceeecccccCCCcccccchh-HhcCCcHH
Confidence 22333466666555555566666666666665543210 01111 111 1 1244 44444444
Q ss_pred HHHhhchhHH-HHhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHHH-HHHhccc---ccc------ccccHHHHHHHHhC
Q 011037 281 YWSYTGFDMV-ATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALA-LTMMVKY---TEI------DMNAAYSIAFRQIG 349 (495)
Q Consensus 281 ~~~f~G~e~~-~~~a~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~-~~~~~~~---~~~------~~~~p~~~~~~~~~ 349 (495)
...+.|.+.. .+----.|+ .|...+++........+...+.... +....-+ |.+ ..|.-.........
T Consensus 249 ~l~~~~vnQ~~VQR~lsl~s-lk~ak~~~~~~~~~~~l~~~~~~~~G~i~~~~Y~~Cdpl~~g~v~~~D~~~P~fV~d~~ 327 (585)
T KOG2349|consen 249 WLSYYGVNQLIVQRYLSLPS-LKHAKPSLLLFGYGVLLIMFIMVFVGMIIYALYTDCDPLCGGLVGCPDQLLPLFVMDLM 327 (585)
T ss_pred HHHHHhhhHHHHhHHhcccc-HHHhhhhhhhhhhHHHHHHHhhcccceeEeeecccCCcccccccCCccccccHHHHHhc
Confidence 4444454432 222222222 2444455544444443333332222 1111111 111 11222222222222
Q ss_pred c--hHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHH
Q 011037 350 M--NWAKYLVSVCALKGMTTSLLVGSLGQARYTTQI 383 (495)
Q Consensus 350 ~--~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~~~ 383 (495)
+ ++..-++..+++.+.++++.+.+.+.|-+.+.-
T Consensus 328 ~~~pGl~GLfia~vfsA~LSsLSS~~NS~s~v~~eD 363 (585)
T KOG2349|consen 328 GHLPGLRGLFIAVVFSAALSSLSSIFNSLSTVFLED 363 (585)
T ss_pred CCCCCccchhHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 2 445556667777778888888888877776654
No 110
>PRK10745 trkD potassium transport protein Kup; Provisional
Probab=63.80 E-value=2.1e+02 Score=30.65 Aligned_cols=190 Identities=15% Similarity=0.154 Sum_probs=85.3
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhheecc--ccCCCCCCCC---------CChhhHHHHH
Q 011037 209 LDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHG--KTTNLDPFLP---------YGTEGVFEAA 277 (495)
Q Consensus 209 ~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~--~~~~~~~~~~---------~~~~~~~~~~ 277 (495)
...+++++++....+--+|... +...++.++++-++.+.+.|+... +++-+..++| ++..++ ..+
T Consensus 143 Vvpit~~ILv~LF~iQ~~GT~~---vG~~FgPIm~vWF~~i~~~Gi~~I~~~P~Vl~AlnP~ya~~f~~~~~~~gf-~~L 218 (622)
T PRK10745 143 IVPLSIIVLTLLFMIQKHGTGM---VGKLFAPIMLTWFLTLAVLGLRSIIANPEVLHALNPMWAVHFFLEYKTVSF-FAL 218 (622)
T ss_pred cHHHHHHHHHHHHHHhccccHH---HhhhhhhHHHHHHHHHHHHHHHHHhcCHHHHhHhCHHHHHHHHHhCCCceE-EEe
Confidence 3456666666666666666554 445566666666666555555432 2222222222 122222 134
Q ss_pred HHHHHHhhchhHHHHhhhhhcC-CCCchhHHHHHHHHHHHHH-HHHHHHHHHHhccccccccccHHHHHHHHhCchHHHH
Q 011037 278 AVVYWSYTGFDMVATMAEETKK-PSRDIPIGLVGSMCMITAV-YCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKY 355 (495)
Q Consensus 278 ~~~~~~f~G~e~~~~~a~E~k~-p~k~~p~ai~~~~~~~~~~-y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 355 (495)
...+.+.+|-|+.-. ++-+ .+|++.++-..-+.=+.++ |+.-...+. --| + ...+|+... ..+++.+
T Consensus 219 G~V~L~vTGaEALYA---DmGHFG~~~Ir~aW~~~v~P~L~LnY~GQgA~ll-~~p-~--~~~NpFf~~----~P~~~~~ 287 (622)
T PRK10745 219 GAVVLAITGVEALYA---DMGHFGKFPIRLAWFTVVLPSLVLNYFGQGALLL-KNP-E--AIKNPFFLL----APDWALI 287 (622)
T ss_pred cceeeeccchHHHhh---ccCCCCccceeeeehhhHHHHHHHHhcchHHHHh-cCc-h--hhcCcHHHh----CChhHHH
Confidence 445577889887532 3332 3455555544333322222 443332222 111 1 123455443 2234333
Q ss_pred HHHHHHHHHHHHHHHHHhhchhHHHHHHHhcCCCch-hhhcccCc-----cccchhHHHHHHHH
Q 011037 356 LVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPP-WHNSILEF-----KWKRMDWLCGNHCT 413 (495)
Q Consensus 356 ~~~~~~~~s~~~~~~~~~~~~sR~l~~~ardg~lP~-~~~~~~~~-----~~p~~~~i~~~~~~ 413 (495)
-+.+...++..-+--+.+.++=.+..+.-+-|.+|+ ...+.+++ +.|..+|++...+.
T Consensus 288 p~viLATlAtIIASQAvISGaFSl~~QAi~Lg~~Prl~I~hTS~~~~GQIYIP~vNw~Lmv~~i 351 (622)
T PRK10745 288 PLLILATLATVIASQAVISGVFSLTRQAVRLGYLPPMRIIHTSEMESGQIYIPFVNWLLYVAVV 351 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCCCCceEEeCCCccCCceeeHHHHHHHHHHHH
Confidence 333222222222222223333344444556699994 23344443 23555666554433
No 111
>KOG3660 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=60.62 E-value=2.5e+02 Score=30.39 Aligned_cols=60 Identities=23% Similarity=0.316 Sum_probs=38.8
Q ss_pred CHhHHHHHHhhhhhhhhhhhccHHhHHhccChHHHHHHHHHH----HHHHHHHHHHhhhhhccc
Q 011037 80 TWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASG----LSALLSAFCYTEFAVEIP 139 (495)
Q Consensus 80 ~~~~~~~l~~~~~ig~g~~~~~~~~~~~~~G~~~~~~~li~~----~~~~~~~~~~ael~s~~P 139 (495)
+..+.+.-.++..+|.|-+...+.....++|.+-++.|++.. +-.+..=++++++.++-|
T Consensus 39 ~~~efllS~ig~~vGlgNvwRFP~~~y~nGGgaFLIpY~i~l~l~GlP~~~LE~slGQf~~~g~ 102 (629)
T KOG3660|consen 39 SKIEFLLSCLGYAVGLGNVWRFPYLAYKNGGGAFLIPYLIVLFLFGLPLFFLEMSLGQFTSQGP 102 (629)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHhcCCchHHHHHHHHHHHhcchHHHHHHHHhhhhcCCh
Confidence 677888888888899999998777766657766444444433 233444555555555444
No 112
>PTZ00206 amino acid transporter; Provisional
Probab=57.04 E-value=96 Score=32.17 Aligned_cols=56 Identities=11% Similarity=0.119 Sum_probs=43.8
Q ss_pred cHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHhcCCCchhhh
Q 011037 339 AAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPPWHN 394 (495)
Q Consensus 339 ~p~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~~~ardg~lP~~~~ 394 (495)
..+.++.+...++++..++.+..++..+++..+++...+..+...-.+...|+++.
T Consensus 121 ~sY~~la~~~~G~~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~ 176 (467)
T PTZ00206 121 RTYEGVARVLLGPWGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLK 176 (467)
T ss_pred CCHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhh
Confidence 35777888776788999999999999999999999999988877655444455443
No 113
>COG4146 Predicted symporter [General function prediction only]
Probab=49.82 E-value=2.8e+02 Score=27.70 Aligned_cols=233 Identities=13% Similarity=0.029 Sum_probs=116.1
Q ss_pred hhHhHHHHhchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHH---HHH
Q 011037 144 SFSFLRVELGDFVAYIAAGNILLEAVV-GAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLI---LLV 219 (495)
Q Consensus 144 ~y~~~~~~~g~~~g~~~g~~~~l~~~~-~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 219 (495)
.-++.++.+++...-+...++.++|.. ..+...++.+..++..++ ..+ ..+ +.+. ..++.+++ +.-
T Consensus 105 IPdFlE~RfD~~TR~Iis~lFLi~y~~~flPtvLYsGAla~nsiF~-l~~-v~~-----IS~g---~~i~~~viaiG~~g 174 (571)
T COG4146 105 IPDFLEERFDKTTRMIISFLFLIAYGVCFLPTVLYSGALALNSIFH-LGE-VLQ-----ISHG---AAIWLLVIAIGLAG 174 (571)
T ss_pred chHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHhhhhc-hHh-hhC-----cCcc---hHHHHHHHHHHHHH
Confidence 567888999999999999888888754 455666666667776665 211 111 1111 11222111 222
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhheec---c------------ccCCCC----CCCCCChhhHHHHHHHH
Q 011037 220 CNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVH---G------------KTTNLD----PFLPYGTEGVFEAAAVV 280 (495)
Q Consensus 220 ~~~i~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~---~------------~~~~~~----~~~~~~~~~~~~~~~~~ 280 (495)
+.+..+-|.|..+.-..+-.+..++.-+.+-+.+++. + +.+.+. +-.+-.|...+.++...
T Consensus 175 ~~Yai~GGLkA~AvsDtiNgigLviGgLlvPifaLi~lG~Gsfa~G~~~itt~h~eKlNaIGg~~d~vPw~a~fTGll~v 254 (571)
T COG4146 175 ILYAIIGGLKAMAVSDTINGIGLVIGGLLVPIFALIALGKGSFAQGIEQITTVHAEKLNAIGGPTDPVPWGAAFTGLLLV 254 (571)
T ss_pred HHHHHHcchhheeeccccchhhHhhhhHHHHHHHHHhhcCccHhhchhhhhccCHHHhcccCCCCCCCcHHHHHHhHhhh
Confidence 3333445666554433333333333222222222221 1 111111 11223466777787766
Q ss_pred HHHhhch-hHHH---HhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcccccccc-ccHHHHHHHHhCchHHHH
Q 011037 281 YWSYTGF-DMVA---TMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDM-NAAYSIAFRQIGMNWAKY 355 (495)
Q Consensus 281 ~~~f~G~-e~~~---~~a~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~ 355 (495)
-+.|... ..+. -.+.+.+.-+|-+-.+-+.-+....++-+-..+++.... |+.+ |..+.....++-...+..
T Consensus 255 N~FYWcTNQ~IvQRtLaak~LaeGQKG~Llaa~fk~~~pl~LvLPGliafhlyg---dL~~aDmaYP~LVn~VlPv~l~G 331 (571)
T COG4146 255 NTFYWCTNQGIVQRTLAAKSLAEGQKGALLAAVFKMLDPLVLVLPGLIAFHLYG---DLPKADMAYPTLVNNVLPVPLVG 331 (571)
T ss_pred heeeeeccHHHHHHHHhhhhhhccccccHHHHHHHHhchHHhhhhHHHHHHHhc---cCCccccccHHHHHhccchHHHH
Confidence 6555443 2233 334555555665544444444444444433333333222 2322 223445555665556666
Q ss_pred HHHHHHHHHHHHHHHHHhhchhHHHHHHHhcCCCchhh
Q 011037 356 LVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPPWH 393 (495)
Q Consensus 356 ~~~~~~~~s~~~~~~~~~~~~sR~l~~~ardg~lP~~~ 393 (495)
++....+-+.+++.|+.+.+++- +|.| +..|+.+
T Consensus 332 Ff~AvLFGAilStFN~fLNSa~T-lf~~---diy~~I~ 365 (571)
T COG4146 332 FFGAVLFGAILSTFNGFLNSAST-LFSM---DIYRRII 365 (571)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhH-Hhhh---hhhhHhh
Confidence 66666677788888888777664 4544 3445544
No 114
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=33.44 E-value=7.1e+02 Score=27.67 Aligned_cols=15 Identities=20% Similarity=0.113 Sum_probs=7.0
Q ss_pred hHHHHhchhHHHHHH
Q 011037 147 FLRVELGDFVAYIAA 161 (495)
Q Consensus 147 ~~~~~~g~~~g~~~g 161 (495)
+....+|++...+.+
T Consensus 224 ~LsDR~GRR~~lii~ 238 (742)
T TIGR01299 224 GLADKLGRKQCLLIC 238 (742)
T ss_pred HHHHHhCcHHHHHHH
Confidence 444455555444443
No 115
>PRK00968 tetrahydromethanopterin S-methyltransferase subunit D; Provisional
Probab=31.06 E-value=65 Score=28.99 Aligned_cols=32 Identities=16% Similarity=0.208 Sum_probs=25.0
Q ss_pred hhhhcCCC-CchhHHHHHHHHHHHHHHHHHHHH
Q 011037 294 AEETKKPS-RDIPIGLVGSMCMITAVYCLMALA 325 (495)
Q Consensus 294 a~E~k~p~-k~~p~ai~~~~~~~~~~y~~~~~~ 325 (495)
.|-.+||| |.+||+++.+.+...+.-+...+.
T Consensus 204 IEGfHDPKFKr~p~~vias~vaS~~~gii~v~~ 236 (240)
T PRK00968 204 IEGFHDPKFKRWPRAVIASFVASLVCGIVAVLM 236 (240)
T ss_pred eecCCCcccccchHHHHHHHHHHHHHHHHHHHH
Confidence 36667998 899999999998888776665543
No 116
>PF11998 DUF3493: Protein of unknown function (DUF3493); InterPro: IPR021883 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 79 to 331 amino acids in length.
Probab=30.06 E-value=2.3e+02 Score=21.03 Aligned_cols=41 Identities=15% Similarity=0.177 Sum_probs=33.3
Q ss_pred hHHHHhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 011037 288 DMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTM 328 (495)
Q Consensus 288 e~~~~~a~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~ 328 (495)
+.-..+=+|++.|=|.+.+.+..+....+.+..++...-..
T Consensus 4 ~~~~rLraE~~aPfR~lR~f~y~a~~aSa~iG~~i~~~rl~ 44 (75)
T PF11998_consen 4 EQYARLRAEAQAPFRGLRRFFYGAFGASAGIGLFIFLFRLI 44 (75)
T ss_pred HHHHHHHHHHHCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456778999999999999999999999888877766444
No 117
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=28.29 E-value=6.7e+02 Score=25.78 Aligned_cols=72 Identities=13% Similarity=0.207 Sum_probs=52.4
Q ss_pred HhHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHh
Q 011037 146 SFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAM 225 (495)
Q Consensus 146 ~~~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 225 (495)
..+.+.+|+....+.+...+++-..++.....+.++++...++ -+ ...+.+++.++...+..
T Consensus 269 ~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~----is--------------Y~~~v~i~~l~S~~lSn 330 (439)
T PRK15433 269 AYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP----LS--------------YRTLVFILGGFSMVVSN 330 (439)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----Cc--------------HHHHHHHHHHHHHHHHH
Confidence 4456899999999999999999888888888899999888643 11 22455666666667777
Q ss_pred hhhhhhHHHH
Q 011037 226 SGTRRSSWLN 235 (495)
Q Consensus 226 ~g~~~~~~~~ 235 (495)
.|.+..-++.
T Consensus 331 ~G~~~II~~s 340 (439)
T PRK15433 331 LGLSQLIQIS 340 (439)
T ss_pred hHHHHHHHHH
Confidence 7766544443
No 118
>PF11174 DUF2970: Protein of unknown function (DUF2970); InterPro: IPR021344 This short family is conserved in Proteobacteria. The function is not known.
Probab=27.67 E-value=1.7e+02 Score=20.32 Aligned_cols=25 Identities=12% Similarity=0.371 Sum_probs=18.6
Q ss_pred HHHHHHHHHhhchhHHHHhhhhhcC
Q 011037 275 EAAAVVYWSYTGFDMVATMAEETKK 299 (495)
Q Consensus 275 ~~~~~~~~~f~G~e~~~~~a~E~k~ 299 (495)
..+-..+|+|.|...-.+.-++.++
T Consensus 3 ~~~~sVl~af~GVqs~~~~e~Df~~ 27 (56)
T PF11174_consen 3 QVVKSVLWAFFGVQSSKNRERDFAQ 27 (56)
T ss_pred HHHHHHHHHHhCcCcchhHHHHHHc
Confidence 3455667999999888887777764
No 119
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=25.89 E-value=7.8e+02 Score=25.76 Aligned_cols=96 Identities=15% Similarity=0.051 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHhhhhhccccccchhHhHHHHhchhHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhhccCCcc
Q 011037 120 SGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNILLEAVV------GAAGLARSWSSYLASMIDSNNSD 193 (495)
Q Consensus 120 ~~~~~~~~~~~~ael~s~~P~~Gg~y~~~~~~~g~~~g~~~g~~~~l~~~~------~~a~~~~~~~~~l~~~~~~~~~~ 193 (495)
..++....+.+|+..+.++.+..-......+.+....++++-.....+.+. .....+...++.+++.--
T Consensus 303 I~l~F~i~GivYG~~sG~iks~~Dv~~~M~~~m~~m~~yiVL~F~aaQFia~F~~Snlg~i~Av~GA~~L~~~~~----- 377 (502)
T PF03806_consen 303 IFLFFLIPGIVYGIASGTIKSDKDVVKMMSKGMKSMAPYIVLAFFAAQFIAYFNWSNLGTILAVKGAEFLKSLGL----- 377 (502)
T ss_pred HHHHHHHHHHHHhhhhceecCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhcCC-----
Confidence 345566689999999999998877888888888777777665433322221 133334445555554311
Q ss_pred cccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhhHHH
Q 011037 194 LLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWL 234 (495)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~ 234 (495)
+ ...+.+.++++.+++|++=...++|-
T Consensus 378 ---------~-----~~~l~i~fill~a~iNLfi~S~SaKW 404 (502)
T PF03806_consen 378 ---------P-----GIPLIIGFILLTAFINLFIGSASAKW 404 (502)
T ss_pred ---------C-----cHHHHHHHHHHHHHHHHhhhcchhhH
Confidence 1 22466778888889998754444443
No 120
>COG4060 MtrD Tetrahydromethanopterin S-methyltransferase, subunit D [Coenzyme metabolism]
Probab=25.32 E-value=90 Score=27.04 Aligned_cols=32 Identities=16% Similarity=0.280 Sum_probs=24.3
Q ss_pred hhhhcCCC-CchhHHHHHHHHHHHHHHHHHHHH
Q 011037 294 AEETKKPS-RDIPIGLVGSMCMITAVYCLMALA 325 (495)
Q Consensus 294 a~E~k~p~-k~~p~ai~~~~~~~~~~y~~~~~~ 325 (495)
.|-.+||| |.+||+++.+++...+.-++..+.
T Consensus 194 IEGfHDPKfkk~pk~vias~vasil~~iia~l~ 226 (230)
T COG4060 194 IEGFHDPKFKKLPKAVIASLVASILAGIIAVLL 226 (230)
T ss_pred eecccChhhhccchHHHHHHHHHHHHHHHHHHH
Confidence 35667998 889999999988777766555443
No 121
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=25.11 E-value=8.1e+02 Score=25.66 Aligned_cols=84 Identities=10% Similarity=0.163 Sum_probs=45.1
Q ss_pred HHHHHHHhhchhHHHHhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHHH--HHHhccccccccc--cHHHHHHHHhCchH
Q 011037 277 AAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALA--LTMMVKYTEIDMN--AAYSIAFRQIGMNW 352 (495)
Q Consensus 277 ~~~~~~~f~G~e~~~~~a~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~--~~~~~~~~~~~~~--~p~~~~~~~~~~~~ 352 (495)
+...+|...|.- -...++..|+. |++++.|--++--..-...+...+ +.....++++..- -.-.+..+..+.+.
T Consensus 302 iI~l~F~i~Giv-YG~~sG~iks~-~Dv~~~M~~~m~~m~~yiVL~F~aaQFia~F~~Snlg~i~Av~GA~~L~~~~~~~ 379 (502)
T PF03806_consen 302 IIFLFFLIPGIV-YGIASGTIKSD-KDVVKMMSKGMKSMAPYIVLAFFAAQFIAYFNWSNLGTILAVKGAEFLKSLGLPG 379 (502)
T ss_pred HHHHHHHHHHHH-HhhhhceecCH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhcCCCc
Confidence 333444444533 35677888884 889999988876555544443333 3344566655421 12234455666555
Q ss_pred HHHHHHHHHH
Q 011037 353 AKYLVSVCAL 362 (495)
Q Consensus 353 ~~~~~~~~~~ 362 (495)
...++.+.++
T Consensus 380 ~~l~i~fill 389 (502)
T PF03806_consen 380 IPLIIGFILL 389 (502)
T ss_pred HHHHHHHHHH
Confidence 4444444333
No 122
>PF12666 PrgI: PrgI family protein; InterPro: IPR024414 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 116 and 146 amino acids in length. PrgI is found encoded on plasmids of Enterococcus faecalis, its function is not known.
Probab=20.87 E-value=3e+02 Score=21.04 Aligned_cols=30 Identities=27% Similarity=0.521 Sum_probs=22.9
Q ss_pred CccccccCCHhHHHHHHhhhhhhhhhhhcc
Q 011037 72 KQPLQKCLTWWDLTWLCFGSVVGSGIFVIT 101 (495)
Q Consensus 72 ~~~l~r~l~~~~~~~l~~~~~ig~g~~~~~ 101 (495)
+++.--.+|.+|+..++.+..++.+.+...
T Consensus 10 e~ki~~GlT~RQl~~l~~~~~~~~~~~~~~ 39 (93)
T PF12666_consen 10 EEKIFFGLTLRQLICLAIGALVGVGVYLLL 39 (93)
T ss_pred cchhccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 444556689999999999988887766544
Done!