Query 011037
Match_columns 495
No_of_seqs 235 out of 2732
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 19:29:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011037.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011037hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 100.0 1.4E-46 4.7E-51 386.0 33.4 331 73-418 4-339 (445)
2 3gia_A Uncharacterized protein 100.0 1.2E-45 4.2E-50 378.8 31.7 361 74-455 3-367 (444)
3 4djk_A Probable glutamate/gamm 100.0 4.6E-43 1.6E-47 366.2 29.8 325 71-411 5-347 (511)
4 2jln_A MHP1; hydantoin, transp 98.8 9.6E-07 3.3E-11 90.7 24.9 285 75-383 23-329 (501)
5 3dh4_A Sodium/glucose cotransp 98.3 0.001 3.4E-08 68.7 30.1 286 76-386 19-351 (530)
6 2xq2_A Sodium/glucose cotransp 98.2 0.0011 3.7E-08 69.5 28.4 281 76-379 48-376 (593)
7 2a65_A Leutaa, Na(+):neurotran 97.2 0.24 8E-06 50.4 31.3 107 211-320 170-291 (519)
8 4ain_A Glycine betaine transpo 84.6 36 0.0012 34.3 24.7 24 75-98 92-115 (539)
9 2wsw_A BCCT family betaine/car 69.8 94 0.0032 31.1 31.2 25 75-99 87-111 (509)
10 2jln_A MHP1; hydantoin, transp 18.8 5.7E+02 0.019 25.2 10.2 58 79-139 33-91 (501)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=100.00 E-value=1.4e-46 Score=386.03 Aligned_cols=331 Identities=19% Similarity=0.283 Sum_probs=284.1
Q ss_pred ccccccCCHhHHHHHHhhhhhhhhhhhccHHhHHhccChHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHhHHHHh
Q 011037 73 QPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVEL 152 (495)
Q Consensus 73 ~~l~r~l~~~~~~~l~~~~~ig~g~~~~~~~~~~~~~G~~~~~~~li~~~~~~~~~~~~ael~s~~P~~Gg~y~~~~~~~ 152 (495)
++++|+++.++++++.+++++|+|+|..++.. .. +|+.++++|++++++.++.+++++|+++++|++||.|.|+++.+
T Consensus 4 ~~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~-~~-~G~~~~~~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~ 81 (445)
T 3l1l_A 4 DADAHKVGLIPVTLMVSGAIMGSGVFLLPANL-AS-TGGIAIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCF 81 (445)
T ss_dssp ---CCCBCHHHHHHHHHHHHCSSHHHHHHHHH-HH-HCTHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTTHHHHHHHHS
T ss_pred CCCCCcccHHHHHHHHHHhHHhhhHHhhHHHH-HH-hhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCchhhHHhHc
Confidence 35689999999999999999999999998764 44 78889999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhhH
Q 011037 153 GDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSS 232 (495)
Q Consensus 153 g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~ 232 (495)
||.+|++.||.+++++....+......++++...++. ... +....+++++++++++.+|++|+|..+
T Consensus 82 G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~-~~~~~~~~~~~~~~~~~in~~g~~~~~ 148 (445)
T 3l1l_A 82 GPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPI------------LKD-PWVLTITCVVVLWIFVLLNIVGPKMIT 148 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGG------------GGS-HHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcc------------ccc-cHHHHHHHHHHHHHHHHHHHhchHHHH
Confidence 9999999999999999998888888888888765541 111 112457888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhheeccccCCCC-CCCCCC---hhhHHHHHHHHHHHhhchhHHHHhhhhhcCCCCchhHHH
Q 011037 233 WLNWISSIVSSCVIVFVIIVGFVHGKTTNLD-PFLPYG---TEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGL 308 (495)
Q Consensus 233 ~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~~p~ai 308 (495)
+++.++..++++.++++++.++...+.++.. ++.+.+ +.+++.++...+|+|.|+|..++++||+|||+|++||++
T Consensus 149 ~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~a~ 228 (445)
T 3l1l_A 149 RVQAVATVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIAT 228 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTTCCCCCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhChhhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccHHH
Confidence 9999999999999888888877766555443 333333 567889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccc-cccHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHhcC
Q 011037 309 VGSMCMITAVYCLMALALTMMVKYTEID-MNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAH 387 (495)
Q Consensus 309 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~~~ardg 387 (495)
..+..++.++|++..++.....|+++.. .++|+.+++++.++++...++.+..+++.+++.++.+++.+|++++|||||
T Consensus 229 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg 308 (445)
T 3l1l_A 229 IGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDG 308 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999889988764 347999999988888899999999999999999999999999999999999
Q ss_pred CCchhhhcccCccccchhHHHHHHHHHHHHH
Q 011037 388 MIPPWHNSILEFKWKRMDWLCGNHCTLVFGD 418 (495)
Q Consensus 388 ~lP~~~~~~~~~~~p~~~~i~~~~~~~~~~~ 418 (495)
.+|++|+|+||++.|.+++++..++..++.+
T Consensus 309 ~lP~~~~~~~~~~~P~~a~~~~~~~~~~~~~ 339 (445)
T 3l1l_A 309 LFPPIFARVNKAGTPVAGLIIVGILMTIFQL 339 (445)
T ss_dssp SSCGGGGCCCTTCCCHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHhcCCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999987777788877776665543
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=100.00 E-value=1.2e-45 Score=378.82 Aligned_cols=361 Identities=19% Similarity=0.300 Sum_probs=307.6
Q ss_pred cccccCCHhHHHHHHhhhhhhhhhhhccHHhHHhccChHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHhHHHHhc
Q 011037 74 PLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELG 153 (495)
Q Consensus 74 ~l~r~l~~~~~~~l~~~~~ig~g~~~~~~~~~~~~~G~~~~~~~li~~~~~~~~~~~~ael~s~~P~~Gg~y~~~~~~~g 153 (495)
+.||+++.+++++++++.++|+|++..++..... +||+.+++|++++++.++.+++++|+++++|++||.|.|+++.+|
T Consensus 3 ~~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~-~G~~~~~~~li~~~~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~G 81 (444)
T 3gia_A 3 LKNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKI-AGRNLPETFILSGIYALLVAYSYTKLGAKIVSNAGPIAFIHKAIG 81 (444)
T ss_dssp CCCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHH-HGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTTHHHHHHHHHC
T ss_pred ccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHhHHHHhC
Confidence 3589999999999999999999999999988877 899999999999999999999999999999999999999999999
Q ss_pred hh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhhH
Q 011037 154 DF-VAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSS 232 (495)
Q Consensus 154 ~~-~g~~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~ 232 (495)
|. .+...+|.+|+++....+.++..+++++...++ ..++ +....+++++++++++.+|++|+|..+
T Consensus 82 ~~~~~g~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~------------~~~~~~~~~~~~~~~~~in~~g~~~~~ 148 (444)
T 3gia_A 82 DNIITGALSILLWMSYVISIALFAKGFAGYFLPLIN-APIN------------TFNIAITEIGIVAFFTALNFFGSKAVG 148 (444)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCCC------------HHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCc------------hHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 96 355568999999999999999999999998776 1111 112446788899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhheeccccCCCCC-CCCCChhhHHHHHHHHHHHhhchhHHHHhhhhhcCCCCchhHHHHHH
Q 011037 233 WLNWISSIVSSCVIVFVIIVGFVHGKTTNLDP-FLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGS 311 (495)
Q Consensus 233 ~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~~p~ai~~~ 311 (495)
+++.++..++++.++++++.++...+.+|+.+ +.++++.+++.++...+|+|.|+|.+++++||+|||+|++||++..+
T Consensus 149 ~~~~~~~~~~i~~~~~~ii~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r~ip~ai~~~ 228 (444)
T 3gia_A 149 RAEFFIVLVKLLILGLFIFAGLITIHPSYVIPDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFIS 228 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCGGGTSCCCSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcChhhcCCCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCcccchhHHHHHH
Confidence 99999999999999888888887777777665 45567778899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccc--ccHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHhcCCC
Q 011037 312 MCMITAVYCLMALALTMMVKYTEIDM--NAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMI 389 (495)
Q Consensus 312 ~~~~~~~y~~~~~~~~~~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~~~ardg~l 389 (495)
..++.++|++..++.....|++++.. +.|+.++++...+++...++.+..+++.+++.++.+++.||++++|||||.+
T Consensus 229 ~~~~~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~l 308 (444)
T 3gia_A 229 ILIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGEL 308 (444)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHhcccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 99999999999999888888887643 4578888887777888889999999999999999999999999999999999
Q ss_pred chhhhcccCccccchhHHHHHHHHHHHHHhhcCcCcccccccccchhHHHHHHHHHHHHHHHHhHH
Q 011037 390 PPWHNSILEFKWKRMDWLCGNHCTLVFGDFRNGIAPETTCSKTLGSSSGSMVAIIVNCNEFISHRL 455 (495)
Q Consensus 390 P~~~~~~~~~~~p~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (495)
|++|+|+|++ .|+++++++.++..++.+... .......++.+.++.|.+.++..+..|.
T Consensus 309 P~~f~~~~~~-~P~~a~~~~~~~~~~~~~~~~------~~~l~~~~~~~~~~~~~~~~~~~~~~r~ 367 (444)
T 3gia_A 309 PEFFERKVWF-KSTEGLYITSALGVLFALLFN------MEGVASITSAVFMVIYLFVILSHYILID 367 (444)
T ss_dssp CSSCCTTSCC-SCTHHHHHHHHHHHHHHHHSC------HHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred CHHHhCCCCC-CCcHHHHHHHHHHHHHHHHcC------HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999865 488888888777766655431 2233445566666777666666554443
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=100.00 E-value=4.6e-43 Score=366.17 Aligned_cols=325 Identities=16% Similarity=0.212 Sum_probs=249.6
Q ss_pred cCccccccCCHhHHHHHHhhhhhhhhhhhccHHhHHhccChHHHHHHHHHHHHH-HHHHHHHhhhhh--ccccccchhHh
Q 011037 71 SKQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSA-LLSAFCYTEFAV--EIPVAGGSFSF 147 (495)
Q Consensus 71 ~~~~l~r~l~~~~~~~l~~~~~ig~g~~~~~~~~~~~~~G~~~~~~~li~~~~~-~~~~~~~ael~s--~~P~~Gg~y~~ 147 (495)
++++++|+++.+++++++++.++|. +..+. ... +|+..++.++++.++. ++.+++++|+++ ++| +||.|.|
T Consensus 5 ~~~~~~r~l~~~~~~~l~~~~~ig~--~~~~~--~~~-~G~~~~~~~~i~~~~~~l~~al~~ael~s~~~~P-~GG~y~~ 78 (511)
T 4djk_A 5 VQTGKAKQLTLLGFFAITASMVMAV--YEYPT--FAT-SGFSLVFFLLLGGILWFIPVGLCAAEMATVDGWE-EGGVFAW 78 (511)
T ss_dssp -------CCCHHHHHHHTGGGGCCG--GGHHH--HHT-TTTHHHHHHHHHHHHTHHHHHHHHHHHHTTSCC----CHHHH
T ss_pred ccCccCccccHHHHHHHHHHHHHhh--chhHH--HHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCC-CCChhhh
Confidence 4567899999999999999999863 32222 234 8888777777777765 569999999999 999 9999999
Q ss_pred HHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhh
Q 011037 148 LRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSG 227 (495)
Q Consensus 148 ~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 227 (495)
+++.+||.+|+++||.+|++++...+......+.++...+. .|+.+.+.+...+++++++++++++|++|
T Consensus 79 ~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~p~~~~~~~~~~~~~~~~~~~~~~in~~g 148 (511)
T 4djk_A 79 VSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILK----------WPALNEDPITKTIAALIILWALALTQFGG 148 (511)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTT----------CGGGTSCSSHHHHHHHHHHHHHHHHHHTC
T ss_pred HHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CcccccCcHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999988888888888765531 12333333346678889999999999999
Q ss_pred hhhhHHHHHHHHHHHHHH-HHHHHHhheecc---cc----CCCCCCCCCC-hhhHHHHHHHHHHHhhchhHHHHhhhhhc
Q 011037 228 TRRSSWLNWISSIVSSCV-IVFVIIVGFVHG---KT----TNLDPFLPYG-TEGVFEAAAVVYWSYTGFDMVATMAEETK 298 (495)
Q Consensus 228 ~~~~~~~~~~~~~~~l~~-~~~~~i~~~~~~---~~----~~~~~~~~~~-~~~~~~~~~~~~~~f~G~e~~~~~a~E~k 298 (495)
+|..++++.+...++++. ++++++.++... +. .+..++.++. ..+.+.++...+|+|.|+|.+++++||+|
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~a~E~k 228 (511)
T 4djk_A 149 TKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEMS 228 (511)
T ss_dssp SSSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCTTSTTTTTTHHHHHHHHTTGGGGTGGGSSSS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCcccchHHHHHHHHHHHHhhHHHHHHHHHhcc
Confidence 999999999988775443 444444444321 11 1222333321 12334456677899999999999999999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccccccccHHH----HHHHHhC--chHHHHHHHHHHHHHHHHHHHHH
Q 011037 299 KPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYS----IAFRQIG--MNWAKYLVSVCALKGMTTSLLVG 372 (495)
Q Consensus 299 ~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~----~~~~~~~--~~~~~~~~~~~~~~s~~~~~~~~ 372 (495)
||+|++||+++.++.++.++|++..++.....|+++...+++.. .+++..| .++...++.+.++++.+++.++.
T Consensus 229 ~P~k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (511)
T 4djk_A 229 NPGRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRVISALLLLGVLAEIASW 308 (511)
T ss_dssp CCTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCCSSSTHHHHHHHHHSSSCSSCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccchhHHHHHHHHHHHHHHHHHHHHHHeecCHhhccccchHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988876554433 3344456 57888999999999999999999
Q ss_pred hhchhHHHHHHHhcCCCchhhhcccCccccchhHHHHHH
Q 011037 373 SLGQARYTTQIARAHMIPPWHNSILEFKWKRMDWLCGNH 411 (495)
Q Consensus 373 ~~~~sR~l~~~ardg~lP~~~~~~~~~~~p~~~~i~~~~ 411 (495)
+++.||++++|||||.+|++|+|+||++.|.+++++..+
T Consensus 309 ~~~~sR~l~a~ardg~lP~~~~~~~~~~~P~~ai~~~~~ 347 (511)
T 4djk_A 309 IVGPSRGMYVTAQKNLLPAAFAKMNKNGVPVTLVISQLV 347 (511)
T ss_dssp TTHHHHHTCHHHHGGGCSSSCCCCCSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHccCCcccHHHHhcCCCCCcHHHHHHHHH
Confidence 999999999999999999999999998888888777633
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=98.81 E-value=9.6e-07 Score=90.70 Aligned_cols=285 Identities=12% Similarity=0.003 Sum_probs=157.1
Q ss_pred ccccCCHhHHHHHHhhhhhhhhhhhccHHhHHhccChH---HHHHHHHHHHHHHHHHHHHhhhhhccccccc-hhHhHHH
Q 011037 75 LQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA---IVLSYLASGLSALLSAFCYTEFAVEIPVAGG-SFSFLRV 150 (495)
Q Consensus 75 l~r~l~~~~~~~l~~~~~ig~g~~~~~~~~~~~~~G~~---~~~~~li~~~~~~~~~~~~ael~s~~P~~Gg-~y~~~~~ 150 (495)
.+|+.++++.+.+=++..+..+.+..-+... .|.. ++++.+++.++..... +-.+..-|+.|- .....+.
T Consensus 23 ~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~---~GLs~~~a~lai~lG~li~~~~~---~l~~~~G~~~Gl~~~v~~R~ 96 (501)
T 2jln_A 23 AERSVGPFSLAAIWFAMAIQVAIFIAAGQMT---SSFQVWQVIVAIAAGCTIAVILL---FFTQSAAIRWGINFTVAARM 96 (501)
T ss_dssp GGCCBCHHHHHHHHHHHHCSTHHHHHHHHHT---TTSCHHHHHHHHHHHHHHHHHHH---HHHTHHHHHHCCCHHHHTTT
T ss_pred hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHh---cCcCHHHHHHHHHHHHHHHHHHH---HHHhHHHhhcCCChhhhhHh
Confidence 3577899999988888776555543322221 2332 5555555555444443 334444444443 4457788
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhh
Q 011037 151 ELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRR 230 (495)
Q Consensus 151 ~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~ 230 (495)
.||++.+.+......+..+...+.+....++.+...+.... +.++ ..+..+++.++...+.+.|.|.
T Consensus 97 ~FG~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~---------g~~~----~~v~~~i~~~l~~~~~~~G~~~ 163 (501)
T 2jln_A 97 PFGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLT---------GFTN----LPLWIVIFGAIQVVTTFYGITF 163 (501)
T ss_dssp TSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------CCCC----HHHHHHHHHHHHHHHHTTHHHH
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------Ccch----HHHHHHHHHHHHHHHHHhCHHH
Confidence 99999999988888887777777777777777766542000 0010 1234445566777778899999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhheecccc--CCCCCCC-CCChhhHHHHHHH-HHHHhhchhHHHHhhhhhcCCCCc---
Q 011037 231 SSWLNWISSIVSSCVIVFVIIVGFVHGKT--TNLDPFL-PYGTEGVFEAAAV-VYWSYTGFDMVATMAEETKKPSRD--- 303 (495)
Q Consensus 231 ~~~~~~~~~~~~l~~~~~~~i~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~-~~~~f~G~e~~~~~a~E~k~p~k~--- 303 (495)
..+++.+...+.++.++.+.+..+...+. ++..... +....+++.++.. ..+...+.-..+.++.+.|++++.
T Consensus 164 i~~~~~~~~p~~~i~~i~~~~~~l~~~g~~~~~~~~~~~~~~~~~f~~ai~~~~~~~~~~~~~~~DysRy~~~~~~~~~~ 243 (501)
T 2jln_A 164 IRWMNVFASPVLLAMGVYMVYLMLDGADVSLGEVMSMGGENPGMPFSTAIMIFVGGWIAVVVSIHDIVKECKVDPNASRE 243 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTCCCSSCCSCHHHHHHHHHTTTHHHHTTTHHHHTTBCCCTTCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhccCCccchHHHHHHHHHHHHHHHHHHhccCcccccCCCCcccccc
Confidence 99999998888777766665554443332 1111111 1112334444332 122223335567888888887551
Q ss_pred --------hhHHHHHHHHHHHHHHHHHHHHHHHhccccccccccHHHHHHHHhCchHH-HHHHH-HHHHHHHHHHHHH-H
Q 011037 304 --------IPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWA-KYLVS-VCALKGMTTSLLV-G 372 (495)
Q Consensus 304 --------~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~-~~~~~s~~~~~~~-~ 372 (495)
.-.+...+..+...+..+..+.... . ....+|...+.+...++.. ..+.. +.++++.+++... .
T Consensus 244 ~~~~~~~~~~~g~~lG~~i~~~~~~~lG~~~~~--~---~~~~dp~~~l~~~l~~~~~~~~~~~~~~~~la~i~tn~~~n 318 (501)
T 2jln_A 244 GQTKADARYATAQWLGMVPASIIFGFIGAASMV--L---VGEWNPVIAITEVVGGVSIPMAILFQVFVLLATWSTNPAAN 318 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H---HSCSCHHHHHHHHHTCCCHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred chhhccchHHHHHHHHHHHHHHHHHHHHHHHHH--h---ccccCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2222222333222222221111111 1 1123455444443433333 56666 7777777776663 6
Q ss_pred hhchhHHHHHH
Q 011037 373 SLGQARYTTQI 383 (495)
Q Consensus 373 ~~~~sR~l~~~ 383 (495)
.++++--+..+
T Consensus 319 ~ys~~~~l~~~ 329 (501)
T 2jln_A 319 LLSPAYTLCST 329 (501)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 77777776665
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=98.28 E-value=0.001 Score=68.72 Aligned_cols=286 Identities=13% Similarity=0.101 Sum_probs=138.7
Q ss_pred cccCCHhHHHHHHhhhhhhhhhhhccHHhHHhccChH-HHHHHHHHHHHHHHHHHHHhhhhhccccccchhHhHHHHhch
Q 011037 76 QKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGD 154 (495)
Q Consensus 76 ~r~l~~~~~~~l~~~~~ig~g~~~~~~~~~~~~~G~~-~~~~~li~~~~~~~~~~~~ael~s~~P~~Gg~y~~~~~~~g~ 154 (495)
.|++++|-...-..++.++...+...+..... .|.. ..+.|. +.+.....+..+...-.+. +.-..++|.++.+|+
T Consensus 19 GR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~-~G~~~~~~~~~-~~~~~~i~~~~~~p~~~~~-~~~T~~e~l~~Rfg~ 95 (530)
T 3dh4_A 19 GKSLPWWAVGASLIAANISAEQFIGMSGSGYS-IGLAIASYEWM-SAITLIIVGKYFLPIFIEK-GIYTIPEFVEKRFNK 95 (530)
T ss_dssp CSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHH-TCGGGHHHHHH-HHHHHHHHHHHTHHHHHHT-TCCSHHHHHHHHTCH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHH-HHHHHHHHHHHHHHHHHHc-CCccHHHHHHHHcCc
Confidence 58999998887777776665555444333333 4654 333232 2222223333343333333 334689999999999
Q ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhhHH
Q 011037 155 FVAYIAAGNILLEAVV-GAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSW 233 (495)
Q Consensus 155 ~~g~~~g~~~~l~~~~-~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~ 233 (495)
....+.+....+.+.. ..+......+..+...++ . +. ...+.+..++.+.+...-|.|...+
T Consensus 96 ~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~G-i------------~~----~~~i~i~~~i~~~Yt~~GGl~aV~~ 158 (530)
T 3dh4_A 96 KLKTILAVFWISLYIFVNLTSVLYLGGLALETILG-I------------PL----MYSILGLALFALVYSIYGGLSAVVW 158 (530)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-C------------CH----HHHHHHHHHHHHHTTC------CCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-C------------CH----HHHHHHHHHHHHHHHHhcchHHHHH
Confidence 8877777655544433 334444445555665554 1 10 1111122222233333457777777
Q ss_pred HHHHHHHHHHHHHHHHHHhheec----------------cccCCCCCC----CC-----CChhhHHHHHHHHHHHhhchh
Q 011037 234 LNWISSIVSSCVIVFVIIVGFVH----------------GKTTNLDPF----LP-----YGTEGVFEAAAVVYWSYTGFD 288 (495)
Q Consensus 234 ~~~~~~~~~l~~~~~~~i~~~~~----------------~~~~~~~~~----~~-----~~~~~~~~~~~~~~~~f~G~e 288 (495)
...+-.++.++..+++.+..+.. .+++++..+ .+ .++..++.+.......+.|.+
T Consensus 159 TD~iQ~~im~~g~~~v~~~~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~g~~ 238 (530)
T 3dh4_A 159 TDVIQVFFLVLGGFMTTYMAVSFIGGTDGWFAGVSKMVDAAPGHFEMILDQSNPQYMNLPGIAVLIGGLWVANLYYWGFN 238 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHCGGGGCSSCCSSSSGGGGSCTTHHHHSTHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCchhcccccCCCCccccccchHHHHHHHHHHHHHHHHcCC
Confidence 66666665555443333322211 011111111 01 112111212222223444543
Q ss_pred H-HHHhhhhhcCCCCchhHHHHHHHHHHHHHHHHHH---HHHHHhcc----------------ccccccccHHHHHHHHh
Q 011037 289 M-VATMAEETKKPSRDIPIGLVGSMCMITAVYCLMA---LALTMMVK----------------YTEIDMNAAYSIAFRQI 348 (495)
Q Consensus 289 ~-~~~~a~E~k~p~k~~p~ai~~~~~~~~~~y~~~~---~~~~~~~~----------------~~~~~~~~p~~~~~~~~ 348 (495)
. ..+-.=..||+ |+..|+..++.....++.++.. ++.....+ .+..+.+..+....+ .
T Consensus 239 q~i~qR~laaks~-k~ar~~~~~~~~~~~~~~~~~~~~Gl~a~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~l~~-~ 316 (530)
T 3dh4_A 239 QYIIQRTLAAKSV-SEAQKGIVFAAFLKLIVPFLVVLPGIAAYVITSDPQLMASLGDIAATNLPSAANADKAYPWLTQ-F 316 (530)
T ss_dssp CHHHHHHHSSSCH-HHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHCHHHHHHHCTTCCSCCCCSSSGGGHHHHHHT-T
T ss_pred HHHHHHHHHcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccchhhcccccccCCCCCCcchHHHHHHH-H
Confidence 2 44444456775 6677888777655433322111 11111111 111233455656555 6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHhc
Q 011037 349 GMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARA 386 (495)
Q Consensus 349 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~~~ard 386 (495)
.++++..++..+++.+.+++..+.+.+.|-. +++|
T Consensus 317 lp~~l~Gl~~a~llAA~mST~ss~l~s~st~---~~~D 351 (530)
T 3dh4_A 317 LPVGVKGVVFAALAAAIVSSLASMLNSTATI---FTMD 351 (530)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHhH
Confidence 6677788888888888888888877777655 3556
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=98.19 E-value=0.0011 Score=69.45 Aligned_cols=281 Identities=14% Similarity=0.116 Sum_probs=139.9
Q ss_pred cccCCHhHHHHHHhhhhhhhhhhhc-cHHhHHhccChH-HHHHHHHHHHHHHHHHHHHhhhhhccccccchhHhHHHHhc
Q 011037 76 QKCLTWWDLTWLCFGSVVGSGIFVI-TGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELG 153 (495)
Q Consensus 76 ~r~l~~~~~~~l~~~~~ig~g~~~~-~~~~~~~~~G~~-~~~~~li~~~~~~~~~~~~ael~s~~P~~Gg~y~~~~~~~g 153 (495)
.|++++|-...-.+++.++...+.. ++.... .|.. ..+.|. ..+.....++.+...-.+. +.-..++|.++.+|
T Consensus 48 GR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~--~G~~~~~~~~~-~~~~~~~~~~~~~p~~~r~-~~~T~~e~l~~Rfg 123 (593)
T 2xq2_A 48 GKSLPWWAVGASLIAANISAEQFIGMSGSGYS--IGLAIASYEWM-SAITLIIVGKYFLPIFIEK-GIYTIPEFVEKRFN 123 (593)
T ss_dssp ---CCHHHHHHHHHGGGSSHHHHHHHHHHHHH--TCGGGGHHHHH-HHHHHHHHHHTHHHHHHHT-TCCSHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHH--cCHHHHHHHHH-HHHHHHHHHHHHHHHHHhC-CCCCcHHHHHHHcc
Confidence 5788888666555555555444444 343333 4543 333222 2222223333344333333 33468999999999
Q ss_pred hhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhhH
Q 011037 154 DFVAYIAAGNILLEAVV-GAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSS 232 (495)
Q Consensus 154 ~~~g~~~g~~~~l~~~~-~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~ 232 (495)
+....+.+....+.+.. ..+....+.+..++...+ . +. ...+.+..++...+....|.|...
T Consensus 124 ~~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~G-i------------~~----~~~i~i~~~i~~~Yt~~GGl~av~ 186 (593)
T 2xq2_A 124 KKLKTILAVFWISLYIFVNLTSVLYLGGLALETILG-I------------PL----MYSILGLALFALVYSIYGGLSAVV 186 (593)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC-C------------CH----HHHHHHHHHHHHHHHHTTC---CC
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-c------------cH----HHHHHHHHHHHHHHHHhcchHHHH
Confidence 98877776655544433 344455555666666555 1 10 112222333334555567888777
Q ss_pred HHHHHHHHHHHHHHHHHHHhheecc----------------ccCCCCCCCCC---------ChhhHHHHHHHHHHHhhch
Q 011037 233 WLNWISSIVSSCVIVFVIIVGFVHG----------------KTTNLDPFLPY---------GTEGVFEAAAVVYWSYTGF 287 (495)
Q Consensus 233 ~~~~~~~~~~l~~~~~~~i~~~~~~----------------~~~~~~~~~~~---------~~~~~~~~~~~~~~~f~G~ 287 (495)
+...+=.+++++..+++.+..+... .++.+..+.+. ++..++.+.......+.|.
T Consensus 187 ~TD~iQ~iiml~~~l~v~~~~l~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 266 (593)
T 2xq2_A 187 WTDVIQVFFLVLGGFMTTYMAVSFIGGTDGWFAGVSKMVDAAPGHFEMILDQSNPQYMNLPGIAVLIGGLWVANLYYWGF 266 (593)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHCGGGSCSSCCSSSGGGGTSCTTHHHHSTHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHhhChhhcccccCCCCcccccchHHHHHHHHHHHHHHHhhcC
Confidence 7766666666555444333222110 01111111111 1111111122222334455
Q ss_pred h-HHHHhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHH-HH--HHh-cc--------------cccc-ccccHHHHHHHH
Q 011037 288 D-MVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMAL-AL--TMM-VK--------------YTEI-DMNAAYSIAFRQ 347 (495)
Q Consensus 288 e-~~~~~a~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~-~~--~~~-~~--------------~~~~-~~~~p~~~~~~~ 347 (495)
+ ...+..=+.||+ |+..|+..++.....++.++... .+ ... .+ ..+. +.+..+.... +
T Consensus 267 ~q~~~qR~laaks~-k~ar~~~~~~~~~~~~~~~~~~~~Gl~a~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~p~l~-~ 344 (593)
T 2xq2_A 267 NQYIIQRTLAAKSV-SEAQKGIVFAAFLALIVPFLVVLPGIAAYVITSDPQLMASLGDIAATNLPSAANADKAYPWLT-Q 344 (593)
T ss_dssp TCSHHHHHHTTSCH-HHHHHHHHHHHHHTTTHHHHHTHHHHHHHHHHTCHHHHHHHC-----CCCCSTBGGGHHHHHH-H
T ss_pred ChHHHHHhheeCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccCCCCCChhhHHHHHH-H
Confidence 4 345566678886 67888888776664444432221 11 111 10 1112 2344455555 6
Q ss_pred hCchHHHHHHHHHHHHHHHHHHHHHhhchhHH
Q 011037 348 IGMNWAKYLVSVCALKGMTTSLLVGSLGQARY 379 (495)
Q Consensus 348 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~ 379 (495)
..++++..++..+++.+.+++..+.+.+.|-.
T Consensus 345 ~lp~~l~gl~~a~llaA~mST~~s~l~a~st~ 376 (593)
T 2xq2_A 345 FLPVGVKGVVFAALAAAIVSSLASMLNSTATI 376 (593)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788888888888888888888877777655
No 7
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=97.22 E-value=0.24 Score=50.40 Aligned_cols=107 Identities=16% Similarity=0.248 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHhhhh-hhhHHHHHHHHHHHHHHHHHHHHhheeccc-------------cCCCCCCCCCChhhHHHH
Q 011037 211 PVAVLILLVCNGIAMSGT-RRSSWLNWISSIVSSCVIVFVIIVGFVHGK-------------TTNLDPFLPYGTEGVFEA 276 (495)
Q Consensus 211 ~~~~~~~~~~~~i~~~g~-~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~-------------~~~~~~~~~~~~~~~~~~ 276 (495)
+.-.+..++..++..+|+ |-..|...++..+..+.++++.+-++...+ ..+++... +...+..+
T Consensus 170 ~~~~~~w~i~~~ii~~Gv~kgiek~~~~~mp~l~vlliiL~ir~ltLpGp~~~A~~Gl~~~~~Pd~s~L~--~~~vw~~A 247 (519)
T 2a65_A 170 IVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLK--DPGVWIAA 247 (519)
T ss_dssp HHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEHHHHHHHHHSCCTTSTT--CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCHHHhC--CHHHHHHH
Confidence 333455566667778899 778999998887777766666655443221 11111111 23456778
Q ss_pred HHHHHHHhh-chhHHHHhhhhhcCCCCchhHHHHHHHHHHHHHHH
Q 011037 277 AAVVYWSYT-GFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYC 320 (495)
Q Consensus 277 ~~~~~~~f~-G~e~~~~~a~E~k~p~k~~p~ai~~~~~~~~~~y~ 320 (495)
...++|++. |+.....++.-.|+ +.|++|........-...-+
T Consensus 248 ~gQ~FFSLslG~G~~ity~SY~~~-~~n~~~~a~~v~~~n~~~sl 291 (519)
T 2a65_A 248 VGQIFFTLSLGFGAIITYASYVRK-DQDIVLSGLTAATLNEKAEV 291 (519)
T ss_dssp HHHHHHHHTTTSSHHHHHHTTSCT-TSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHhHHhhhhcccCC-CcChHhhHHHHHHHHHHHHH
Confidence 888888876 88888888887776 56777776666555544433
No 8
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=84.65 E-value=36 Score=34.35 Aligned_cols=24 Identities=13% Similarity=0.135 Sum_probs=20.0
Q ss_pred ccccCCHhHHHHHHhhhhhhhhhh
Q 011037 75 LQKCLTWWDLTWLCFGSVVGSGIF 98 (495)
Q Consensus 75 l~r~l~~~~~~~l~~~~~ig~g~~ 98 (495)
-|.+++.++.++|.++.-+|.|+.
T Consensus 92 ~kPefS~~sW~aMlF~AGmGiGl~ 115 (539)
T 4ain_A 92 EAPEFRTVSWISMMFAAGMGIGLM 115 (539)
T ss_dssp CCCSSCHHHHHHHHHTTSCCTHHH
T ss_pred CCCCCcchHHHHHHHHHhhcchhe
Confidence 367899999999999988887764
No 9
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=69.82 E-value=94 Score=31.09 Aligned_cols=25 Identities=8% Similarity=0.177 Sum_probs=19.7
Q ss_pred ccccCCHhHHHHHHhhhhhhhhhhh
Q 011037 75 LQKCLTWWDLTWLCFGSVVGSGIFV 99 (495)
Q Consensus 75 l~r~l~~~~~~~l~~~~~ig~g~~~ 99 (495)
-|.+++.++.+++.++.-+|.|+..
T Consensus 87 ~kPefs~~sW~aMlF~aGmGiGl~f 111 (509)
T 2wsw_A 87 EKPEFSTASWIFMMFASCTSAAVLF 111 (509)
T ss_dssp SCCSSCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCccchHHHHHHHHhhhhHHhh
Confidence 4567999999999998887877543
No 10
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=18.84 E-value=5.7e+02 Score=25.23 Aligned_cols=58 Identities=5% Similarity=0.015 Sum_probs=29.4
Q ss_pred CCHhHHHHHHhhhh-hhhhhhhccHHhHHhccChHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 011037 79 LTWWDLTWLCFGSV-VGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIP 139 (495)
Q Consensus 79 l~~~~~~~l~~~~~-ig~g~~~~~~~~~~~~~G~~~~~~~li~~~~~~~~~~~~ael~s~~P 139 (495)
...|-...++++.. +|.+... +....+ +=...+++-++.+++..+.+..=.+.+..+|
T Consensus 33 ~~~W~g~~~~i~~~~~Ga~~~~--GLs~~~-a~lai~lG~li~~~~~~l~~~~G~~~Gl~~~ 91 (501)
T 2jln_A 33 AAIWFAMAIQVAIFIAAGQMTS--SFQVWQ-VIVAIAAGCTIAVILLFFTQSAAIRWGINFT 91 (501)
T ss_dssp HHHHHHHHCSTHHHHHHHHHTT--TSCHHH-HHHHHHHHHHHHHHHHHHHTHHHHHHCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc--CcCHHH-HHHHHHHHHHHHHHHHHHHhHHHhhcCCChh
Confidence 44455555555544 3433332 333333 3334566666666666666665555555555
Done!