BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 011038
         (495 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2F2U|A Chain A, Crystal Structure Of The Rho-Kinase Kinase Domain
 pdb|2F2U|B Chain B, Crystal Structure Of The Rho-Kinase Kinase Domain
 pdb|2H9V|A Chain A, Structural Basis For Induced-Fit Binding Of Rho-Kinase To
           The Inhibitor Y27632
          Length = 402

 Score = 30.8 bits (68), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 20/87 (22%), Positives = 45/87 (51%), Gaps = 3/87 (3%)

Query: 316 GAQSRGSRSDGTKKLQSAVRATESALNIEQKRLQKLKELDEENQSLKLSSNEDFSGYEKD 375
           GA   G+ +   +KL++ +R   S +N+E   L  L  L  +     L  N++   +   
Sbjct: 1   GASGDGAGASRQRKLEALIRDPRSPINVES-LLDGLNSLVLDLDFPALRKNKNIDNFLNR 59

Query: 376 ISRLIRQIRGLKDNVRTKASELVKILN 402
             +++++IRGL+  ++ +  ++VK++ 
Sbjct: 60  YEKIVKKIRGLQ--MKAEDYDVVKVIG 84


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.129    0.346 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,713,942
Number of Sequences: 62578
Number of extensions: 345184
Number of successful extensions: 658
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 656
Number of HSP's gapped (non-prelim): 9
length of query: 495
length of database: 14,973,337
effective HSP length: 103
effective length of query: 392
effective length of database: 8,527,803
effective search space: 3342898776
effective search space used: 3342898776
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)