BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011038
(495 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5B5B0|PAN1_EMENI Actin cytoskeleton-regulatory complex protein pan1 OS=Emericella
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL
194 / M139) GN=pan1 PE=3 SV=1
Length = 1484
Score = 38.5 bits (88), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 45/74 (60%), Gaps = 7/74 (9%)
Query: 223 ERKIRSDAAYEEAKRKE---RALQEEKIRQEKVKAEAEMQAKLRAEEAKRAALEAEKRAA 279
E K R D E + +E RAL EE++RQ K+K + E K R EEAK+AA E E R A
Sbjct: 1081 EAKQREDEFAREQQEQEARLRAL-EEQVRQGKIKKQEE---KRRREEAKKAAQEQEARLA 1136
Query: 280 KEAAEREAAENSKR 293
++ AE EAA+ +R
Sbjct: 1137 RQRAELEAAKERER 1150
>sp|A7TL57|ATG11_VANPO Autophagy-related protein 11 OS=Vanderwaltozyma polyspora (strain
ATCC 22028 / DSM 70294) GN=ATG11 PE=3 SV=1
Length = 1219
Score = 35.0 bits (79), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 76/144 (52%), Gaps = 12/144 (8%)
Query: 236 KRKERALQEEKIRQ---EKVKAEAEMQAKLR----AEEAKRAALEAEKRAAKEAAEREAA 288
KR+E + E+ ++Q E ++ + E +AKL+ EA R ALE E +AAKE +E+
Sbjct: 758 KREEHKVLEDSLKQRENEGLRYKDEYEAKLKELTEKFEADRRALEDEIKAAKEQNMKESM 817
Query: 289 ENSKRITAGVSQDGACGRQPDDSSVIAGAQSRGSRSDGTKKLQSAVRATESAL--NIEQK 346
E +A S D + + + S+ + QS + + + QS ++ E ++ ++EQ
Sbjct: 818 EQQTEQSANQSIDQSIEQSTEQSTEQSTEQSMEQSMEQSME-QSVEQSMEHSMEHSMEQS 876
Query: 347 RLQKLKELDE--ENQSLKLSSNED 368
Q + + D +NQS++ ++ED
Sbjct: 877 EKQNMGQNDATIDNQSIETPTSED 900
>sp|Q8CDI7|CC150_MOUSE Coiled-coil domain-containing protein 150 OS=Mus musculus
GN=Ccdc150 PE=2 SV=2
Length = 1110
Score = 32.7 bits (73), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 66/122 (54%), Gaps = 20/122 (16%)
Query: 170 QSNSALAQVEKDRDMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSD 229
Q S + ++K D+ RE +RK +A +L+ A+Q + L+S++ D
Sbjct: 764 QHGSEIEPLQKSLDITREDNRK--------LAMSLEQ---ALQTNGHLQSKL-------D 805
Query: 230 AAYEEAKRKERALQEEKIRQEKVKAEAEMQAKLRAE--EAKRAALEAEKRAAKEAAEREA 287
E+ + KER Q + +E+V E++++A+L AE EA R + E+ AK+A++RE
Sbjct: 806 HLQEKLESKERERQSLEAFKEQVAEESKVEAELHAERIEALRKQFQTERETAKKASQREV 865
Query: 288 AE 289
+E
Sbjct: 866 SE 867
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.127 0.337
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 159,882,773
Number of Sequences: 539616
Number of extensions: 6306894
Number of successful extensions: 51375
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 2787
Number of HSP's that attempted gapping in prelim test: 35222
Number of HSP's gapped (non-prelim): 9399
length of query: 495
length of database: 191,569,459
effective HSP length: 122
effective length of query: 373
effective length of database: 125,736,307
effective search space: 46899642511
effective search space used: 46899642511
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)