Query 011038
Match_columns 495
No_of_seqs 57 out of 59
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 19:30:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011038.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011038hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pev_B Nucleoporin GLE1; RECA, 100.0 8.2E-31 2.8E-35 258.9 10.3 163 328-494 4-175 (297)
2 3vkg_A Dynein heavy chain, cyt 75.4 1.2E+02 0.0042 39.1 20.0 26 435-460 2111-2136(3245)
3 3oja_B Anopheles plasmodium-re 62.9 1.4E+02 0.0047 30.5 16.3 25 166-190 470-494 (597)
4 2b5u_A Colicin E3; high resolu 51.0 1.2E+02 0.0041 32.9 11.7 18 275-292 353-370 (551)
5 1deq_A Fibrinogen (alpha chain 33.0 1.1E+02 0.0037 32.0 7.8 63 142-205 118-189 (390)
6 3rk6_A Polyadenylate-binding p 32.7 1.1E+02 0.0039 28.8 7.5 86 372-459 19-110 (234)
7 3vkg_A Dynein heavy chain, cyt 27.6 1.2E+03 0.04 30.6 17.9 50 181-235 1908-1957(3245)
8 2i1j_A Moesin; FERM, coiled-co 27.5 85 0.0029 33.5 6.2 19 27-45 165-183 (575)
9 3oja_A Leucine-rich immune mol 26.5 3E+02 0.01 27.5 9.7 70 152-221 414-486 (487)
10 3ghg_A Fibrinogen alpha chain; 25.7 1.2E+02 0.0039 33.1 6.7 53 143-196 116-177 (562)
11 2zuo_A MVP, major vault protei 25.2 8.2E+02 0.028 28.0 14.7 27 212-238 679-705 (861)
12 2pjh_A Protein NPL4, nuclear p 21.3 47 0.0016 26.4 2.2 32 4-37 5-36 (80)
No 1
>3pev_B Nucleoporin GLE1; RECA, heat, DEAD-BOX, ATPase, helicase, mRNA export, nuclear hydrolase; HET: IHP; 2.50A {Saccharomyces cerevisiae} PDB: 3peu_B* 3pex_B* 3pez_B* 3rrm_B* 3rrn_B*
Probab=99.97 E-value=8.2e-31 Score=258.89 Aligned_cols=163 Identities=15% Similarity=0.171 Sum_probs=135.2
Q ss_pred ccchhhhhhchHHHHHHHHHHHHHHHHHHHhhhhcccccccchhhhhhhhhhhhhhccchhHHHhHHHHHHHHhcCCCC-
Q 011038 328 KKLQSAVRATESALNIEQKRLQKLKELDEENQSLKLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNPLC- 406 (495)
Q Consensus 328 ~~s~~~~raa~sAl~~E~~Rlk~LkEL~e~n~~LK~~lnke~~d~rRqI~K~VgQIS~tkeqVk~Ks~ELvqiLn~pq~- 406 (495)
+-+.++..+.......++-+......++..|+.+ ++.+++++|+|+++||||++|.+|++.++++|.++|+++..
T Consensus 4 ~~~~~~~~~~~y~~~i~~ik~~v~~~~~~~n~~l----K~~~~~~kR~I~~~igQLt~s~~qi~~i~~~L~~ll~~~~~~ 79 (297)
T 3pev_B 4 NFDKISKMFWHYKDKIAQIKQDIVLPIKKADVNV----RNLLSRHKRKINPKFGQLTNSNQQLFKIQNELTQLINDTKGD 79 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHSCHHH----HHHHHHHHHHHTTHHHHCCSBHHHHHHHHHHHHHHHHTTTTS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHH----HHHHHHHhhhccchhccccCCHHHHHHHHHHHHHHHhCccCC
Confidence 3444555556666666666655555555555554 45569999999999999999999999999999999987643
Q ss_pred --chHHHHHHHHHHHHhhhcC---CCCCCchhhHHHHHHHHhhcccHHHHHHHHhhhhccccccccc--chhhhHhhhcc
Q 011038 407 --PQSISLATFSKKVVSRCET---PDDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHI--VFSEFRLHLNQ 479 (495)
Q Consensus 407 --P~~fALnifAKKIISQ~Es---~a~s~AFalAeVIv~VaaQ~Pe~~DILLAkFHkvCpYTVPkyi--~~~~~r~~~~~ 479 (495)
|+.|+||+|||+||+|+|+ .++..|||||.|++.|++++|+|+|||||+||++|||+||+|. .+++||.+|||
T Consensus 80 ~~~~~~~ln~lAK~iV~Q~e~ev~~~p~sA~PlA~v~~~l~~~~p~~~dillA~l~k~CP~~vp~~~~~~teegr~~mG~ 159 (297)
T 3pev_B 80 SLAYHWILNFIAKAVVHQAETEVRVKPESALPLGKLTLYLLVQFPELQELFMARLVKKCPFVIGFTCEIDTEKGRQNMGW 159 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHSTTHHHHHHHHHHHHCGGGGTCCCCCSSHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHHHHHhccCCcccchHHHHHHHHHHhCccHHHHHHHHHhhcCCcccccCCCcccHHHHHHcCC
Confidence 5567999999999999999 3467899999999999999999999999999999999999985 47899999999
Q ss_pred ccc-chhHHHHHHhhh
Q 011038 480 KRL-TTKLLDTVRKME 494 (495)
Q Consensus 480 kr~-~~k~~~~~~~~~ 494 (495)
||. |++||++..-++
T Consensus 160 ~~~~dg~~E~~~~y~~ 175 (297)
T 3pev_B 160 KRNNENKWEDNTSYDE 175 (297)
T ss_dssp CBCTTSCBCCHHHHHH
T ss_pred eeCCCCCcccHHHHHH
Confidence 996 689988765544
No 2
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=75.42 E-value=1.2e+02 Score=39.08 Aligned_cols=26 Identities=4% Similarity=-0.043 Sum_probs=14.2
Q ss_pred HHHHHHHHhhcccHHHHHHHHhhhhc
Q 011038 435 GYVIVLVASQVPQVMDILLGEFHRAC 460 (495)
Q Consensus 435 AeVIv~VaaQ~Pe~~DILLAkFHkvC 460 (495)
|..|.+++....++-.-|+......|
T Consensus 2111 aafisY~G~f~~~~R~~l~~~W~~~l 2136 (3245)
T 3vkg_A 2111 SAFLAYIGFFDQNFRTDLMRKWMIRL 2136 (3245)
T ss_dssp HHHHHTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 33444455555556566666665555
No 3
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=62.87 E-value=1.4e+02 Score=30.49 Aligned_cols=25 Identities=20% Similarity=0.175 Sum_probs=11.8
Q ss_pred HHHhhhhHHHHhhHHhHHhHHHHhh
Q 011038 166 SENEQSNSALAQVEKDRDMRREMDR 190 (495)
Q Consensus 166 ~E~q~s~sa~arveKy~e~r~e~~r 190 (495)
+++...-..+...+.+.+.+++..+
T Consensus 470 ~~~~~~~~~l~~~~~~i~~~~~~~~ 494 (597)
T 3oja_B 470 NEQIQQEQLLQGLHAEIDTNLRRYR 494 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhcC
Confidence 3334444455555555555544433
No 4
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=51.00 E-value=1.2e+02 Score=32.85 Aligned_cols=18 Identities=17% Similarity=0.316 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 011038 275 EKRAAKEAAEREAAENSK 292 (495)
Q Consensus 275 ~rkaa~EAa~ke~ae~~~ 292 (495)
.+|++..|+-+..++..+
T Consensus 353 ~~~~~~~~~n~~~~~~~~ 370 (551)
T 2b5u_A 353 SRKSELDAANKTLADAIA 370 (551)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHhhhhHHHHHHH
Confidence 467777777776666543
No 5
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=32.96 E-value=1.1e+02 Score=32.00 Aligned_cols=63 Identities=13% Similarity=0.161 Sum_probs=52.6
Q ss_pred hhhcccchhHHHHHHHHHHHHHHHHHHhhhhHHHHhhHHhHHhH---------HHHhhhhcHHHHHHHHHHHH
Q 011038 142 THQHQLGVKEEIRNLISTLETQLISENEQSNSALAQVEKDRDMR---------REMDRKNDTVYQRKIAEALD 205 (495)
Q Consensus 142 ~~~h~~~v~eeir~~~s~le~~l~~E~q~s~sa~arveKy~e~r---------~e~~r~~~~~~qr~~aea~~ 205 (495)
.+.|+.-+|+=|+++|- .-..|++=|..-.+.|-|||...+.- ..+++++|..++-++.+.|+
T Consensus 118 Le~~i~~lk~~V~~q~~-~ir~Lq~~l~~q~~kiqRLE~~Id~c~~~C~~sC~~~l~~~vD~e~ye~qqKQL~ 189 (390)
T 1deq_A 118 LRSRIEILRRKVIEQVQ-RINLLQKNVRDQLVDMKRLEVDIDIKIRSCKGSCSRALEHKVDLEDYKNQQKQLE 189 (390)
T ss_pred HHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhccHHHHHHHHHHHH
Confidence 36788889999999988 66778888899999999999998764 46899999998888877763
No 6
>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens}
Probab=32.68 E-value=1.1e+02 Score=28.82 Aligned_cols=86 Identities=10% Similarity=0.193 Sum_probs=56.7
Q ss_pred hhhhhhhhhhhhccchhHHHhHHHHHHHHhcCCCCchHHHHHHHHHHHHhhhcCCCCCCchhhHHHHHHHHhhc---cc-
Q 011038 372 YEKDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQV---PQ- 447 (495)
Q Consensus 372 ~rRqI~K~VgQIS~tkeqVk~Ks~ELvqiLn~pq~P~~fALnifAKKIISQ~Es~a~s~AFalAeVIv~VaaQ~---Pe- 447 (495)
+.|.|+-.+|.|+.+.+.....+.+|+.+++.. ..-.-.|..+++-|+.++-.+. .++..||.....+...+ |.
T Consensus 19 l~r~v~~iLNkLT~~p~~f~~l~~~i~~~~~~~-~~~~~~L~~vi~lIfekAi~ep-~fs~~YA~LC~~l~~~l~~~~~~ 96 (234)
T 3rk6_A 19 LSEYVQDFLNHLTEQPGSFETEIEQFAETLNGC-VTTDDALQELVELIYQQATSIP-NFSYMGARLCNYLSHHLTISPQS 96 (234)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH-CCSHHHHHHHHHHHHHHHHSST-TCHHHHHHHHHHHHHHCCCCCTT
T ss_pred HHHHHHHHHHHccCChhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhcCCCCch
Confidence 688888899999865666777777777776432 1112346666677776665533 36666777777777655 43
Q ss_pred --HHHHHHHHhhhh
Q 011038 448 --VMDILLGEFHRA 459 (495)
Q Consensus 448 --~~DILLAkFHkv 459 (495)
|..+||.+.+.-
T Consensus 97 ~~Fr~lLL~rcQ~e 110 (234)
T 3rk6_A 97 GNFRQLLLQRCRTE 110 (234)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 788888766553
No 7
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=27.62 E-value=1.2e+03 Score=30.63 Aligned_cols=50 Identities=14% Similarity=0.224 Sum_probs=22.6
Q ss_pred hHHhHHHHhhhhcHHHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHhhhHHHHHHH
Q 011038 181 DRDMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDAAYEEA 235 (495)
Q Consensus 181 y~e~r~e~~r~~~~~~qr~~aea~~~~~~~~qrd~e~~sq~eer~~r~~aA~EEA 235 (495)
|.+.|.++..+ +..+.--|++=..+..-=.+++.+..+.+..-+.+.+||
T Consensus 1908 l~~K~~el~~~-----~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea 1957 (3245)
T 3vkg_A 1908 INEKRDQLEEE-----QLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQA 1957 (3245)
T ss_dssp HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555443 223333444433343334445555555554444444444
No 8
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=27.46 E-value=85 Score=33.45 Aligned_cols=19 Identities=0% Similarity=-0.148 Sum_probs=8.5
Q ss_pred hHHHHHHHHHHHHHhccCC
Q 011038 27 FDALLSELNSLETRLNASS 45 (495)
Q Consensus 27 ~~~l~~el~~le~~~~~~~ 45 (495)
.+.+..-+-..=.++.+.+
T Consensus 165 ~e~~~~~I~~~hk~l~G~s 183 (575)
T 2i1j_A 165 REEWEQSITNWWQEHRGML 183 (575)
T ss_dssp HHHHHHHHHHHHGGGTTCC
T ss_pred HHHHHHHHHHHHHHccCCC
Confidence 3444444444444444443
No 9
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=26.45 E-value=3e+02 Score=27.51 Aligned_cols=70 Identities=14% Similarity=0.077 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHhhHHhHHhHHHHhhhhcH---HHHHHHHHHHHhhhhHhhhhHHHHHHH
Q 011038 152 EIRNLISTLETQLISENEQSNSALAQVEKDRDMRREMDRKNDT---VYQRKIAEALDNHLTAVQRDHELKSQI 221 (495)
Q Consensus 152 eir~~~s~le~~l~~E~q~s~sa~arveKy~e~r~e~~r~~~~---~~qr~~aea~~~~~~~~qrd~e~~sq~ 221 (495)
.+..+.+.+...+++|..+-..-......-.+.=++.-.|+++ ++.-+|++|..+...+++|..-+.+|.
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (487)
T 3oja_A 414 AIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVREQNLASQL 486 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHHHHHHHhc
No 10
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=25.70 E-value=1.2e+02 Score=33.09 Aligned_cols=53 Identities=13% Similarity=0.150 Sum_probs=44.0
Q ss_pred hhcccchhHHHHHHHHHHHHHHHHHHhhhhHHHHhhHHhHHhHHH---------HhhhhcHHH
Q 011038 143 HQHQLGVKEEIRNLISTLETQLISENEQSNSALAQVEKDRDMRRE---------MDRKNDTVY 196 (495)
Q Consensus 143 ~~h~~~v~eeir~~~s~le~~l~~E~q~s~sa~arveKy~e~r~e---------~~r~~~~~~ 196 (495)
+.|+..++++|-|+|+.| ..|++=|..-.+.|-|||.+.....+ +++++|+++
T Consensus 116 RRrIqyLKekVdnQlsnI-rvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~s 177 (562)
T 3ghg_A 116 RSRIEVLKRKVIEKVQHI-QLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKD 177 (562)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHH
Confidence 678889999999999666 89999999999999999999988754 455666554
No 11
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=25.19 E-value=8.2e+02 Score=28.03 Aligned_cols=27 Identities=22% Similarity=0.465 Sum_probs=18.5
Q ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHHH
Q 011038 212 QRDHELKSQIEERKIRSDAAYEEAKRK 238 (495)
Q Consensus 212 qrd~e~~sq~eer~~r~~aA~EEAkRk 238 (495)
.++.+-+-.+|-.||.++|+.|.+++.
T Consensus 679 ~~eQea~g~Lerqki~d~a~aE~~r~~ 705 (861)
T 2zuo_A 679 RLEQEARGRLERQKILDQSEAEKARKE 705 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 344455566677788888888887665
No 12
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=21.34 E-value=47 Score=26.41 Aligned_cols=32 Identities=16% Similarity=0.252 Sum_probs=21.8
Q ss_pred cccccCCCCccCccccCCCCCCChHHHHHHHHHH
Q 011038 4 IKLELRCPQKVDGIAIDPEPDWSFDALLSELNSL 37 (495)
Q Consensus 4 ~~~e~~cp~~~~~~~~dp~p~ws~~~l~~el~~l 37 (495)
+.|-.|+|....=|. -+|+|||++|...+.+.
T Consensus 5 m~lRvrs~~G~~Ri~--v~~~~t~~~L~~~I~~~ 36 (80)
T 2pjh_A 5 IIIRVQSPDGVKRIT--ATKRETAATFLKKVAKE 36 (80)
T ss_dssp CCCEEECSSEEEECC--CCSSCCHHHHHHHHHHH
T ss_pred EEEEEECCCCCEEEE--cCCcChHHHHHHHHHHH
Confidence 456667777433354 45899999999887643
Done!