Query 011038
Match_columns 495
No_of_seqs 57 out of 59
Neff 3.3
Searched_HMMs 13730
Date Mon Mar 25 19:31:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011038.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011038hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1hu3a_ a.118.1.14 (A:) Eukary 27.2 52 0.0038 27.6 6.2 83 369-458 8-100 (243)
2 d1h2vc1 a.118.1.14 (C:29-290) 18.0 71 0.0052 28.2 5.3 77 377-459 4-83 (262)
3 d2nsfa1 a.213.1.4 (A:1-160) Mi 12.1 62 0.0045 25.3 2.8 22 21-42 40-61 (160)
4 d1fngb2 d.19.1.1 (B:4-92) Clas 9.3 1E+02 0.0076 23.9 3.2 34 432-465 48-89 (89)
5 d2bhua2 b.71.1.1 (A:531-602) G 8.9 28 0.002 26.3 -0.5 22 459-480 42-64 (72)
6 d2p6va1 a.277.1.1 (A:582-678) 8.8 4.2E+02 0.031 20.7 7.1 66 337-407 4-69 (97)
7 d1n62a2 d.15.4.2 (A:3-81) Carb 8.7 46 0.0034 25.2 0.8 20 13-32 7-28 (79)
8 d1st6a5 a.24.9.1 (A:489-646) V 8.5 2.3E+02 0.017 23.8 5.4 77 348-424 54-157 (158)
9 d1t2aa_ c.2.1.2 (A:) GDP-manno 8.2 1E+02 0.0076 26.1 3.1 33 460-493 303-336 (347)
10 d1dgja2 d.15.4.2 (A:1-80) Alde 7.9 56 0.004 24.8 0.9 21 13-33 7-29 (80)
No 1
>d1hu3a_ a.118.1.14 (A:) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.25 E-value=52 Score=27.58 Aligned_cols=83 Identities=5% Similarity=0.068 Sum_probs=48.3
Q ss_pred chhhhhhhhhhhhhhccchhHHHhHHHHHHHHhcCCCCchHHHHHHHHHHHHhhhcCCCCCCchhhHHHHHHHHhhcc--
Q 011038 369 FSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVP-- 446 (495)
Q Consensus 369 ~~d~rRqI~K~VgQIS~tkeqVk~Ks~ELvqiLn~pq~P~~fALnifAKKIISQ~Es~a~s~AFalAeVIv~VaaQ~P-- 446 (495)
..++.|+|+..+|+|+. +++...+.+|.++.. ..+. .+..++.-|+..+-.+. .++..||.....++..+|
T Consensus 8 ~~~l~r~v~~lLNKLt~--~n~~~i~~ei~~l~~--~~~~--~l~~~v~~I~~kai~e~-~f~~~YA~Lc~~l~~~~~~~ 80 (243)
T d1hu3a_ 8 TQELFRKVRSILNKLTP--QMFNQLMKQVSGLTV--DTEE--RLKGVIDLVFEKAIDEP-SFSVAYANMCRCLVTLKVPM 80 (243)
T ss_dssp HHHHHHHHHHHHTCSSC--CCHHHHHHHHTTCCC--CSHH--HHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHTTCCCC-
T ss_pred HHHHHHHHHHHHhhCCH--HHHHHHHHHHHHHHc--cCHH--HHHHHHHHHHHHHHcCc-cccHHHHHHHHHHHHhcCcc
Confidence 35678899999999973 333444445544321 1221 23344444444443322 366678888888877776
Q ss_pred --------cHHHHHHHHhhh
Q 011038 447 --------QVMDILLGEFHR 458 (495)
Q Consensus 447 --------e~~DILLAkFHk 458 (495)
.|+..||...+.
T Consensus 81 ~~~~~~~~~F~~~Ll~~~q~ 100 (243)
T d1hu3a_ 81 ADKPGNTVNFRKLLLNRCQK 100 (243)
T ss_dssp --------CHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHH
Confidence 466777766543
No 2
>d1h2vc1 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.02 E-value=71 Score=28.20 Aligned_cols=77 Identities=12% Similarity=0.069 Sum_probs=45.6
Q ss_pred hhhhhhhcc-chhHHHhHHHHHHHHhcCCCCch--HHHHHHHHHHHHhhhcCCCCCCchhhHHHHHHHHhhcccHHHHHH
Q 011038 377 SRLIRQIRG-LKDNVRTKASELVKILNNPLCPQ--SISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVPQVMDILL 453 (495)
Q Consensus 377 ~K~VgQIS~-tkeqVk~Ks~ELvqiLn~pq~P~--~fALnifAKKIISQ~Es~a~s~AFalAeVIv~VaaQ~Pe~~DILL 453 (495)
...|+.|.. +..++......|...+... .+. .-.+.+|...++.| |.....||.+++.+-+..|+|+..++
T Consensus 4 ~~LI~rige~~~~s~~~~ie~L~~~l~~~-l~~~~~~il~~l~~~~~~~-----P~k~~~yA~Lv~llN~~~~e~g~~~l 77 (262)
T d1h2vc1 4 ESLICKVGEKSACSLESNLEGLAGVLEAD-LPNYKSKILRLLCTVARLL-----PEKLTIYTTLVGLLNARNYNFGGEFV 77 (262)
T ss_dssp HHHHHTTTSSCSSCHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHC-----GGGHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHcccccccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhC-----cchHHHHHHHHHHHccCcHHHHHHHH
Confidence 344555553 4445666667776666422 221 11244444443332 22345599999999999999999888
Q ss_pred HHhhhh
Q 011038 454 GEFHRA 459 (495)
Q Consensus 454 AkFHkv 459 (495)
.+++..
T Consensus 78 ~~~~~~ 83 (262)
T d1h2vc1 78 EAMIRQ 83 (262)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877653
No 3
>d2nsfa1 a.213.1.4 (A:1-160) Micothiol-dependent maleylpyruvate isomerase {Corynebacterium glutamicum [TaxId: 1718]}
Probab=12.09 E-value=62 Score=25.31 Aligned_cols=22 Identities=14% Similarity=0.193 Sum_probs=17.9
Q ss_pred CCCCCChHHHHHHHHHHHHHhc
Q 011038 21 PEPDWSFDALLSELNSLETRLN 42 (495)
Q Consensus 21 p~p~ws~~~l~~el~~le~~~~ 42 (495)
|+|.||..+||.=|...+..+.
T Consensus 40 ~c~gWtvrdlv~Hl~~~~~~~~ 61 (160)
T d2nsfa1 40 LLEGWTRSHLIAHVAYNAIALC 61 (160)
T ss_dssp SSTTCBHHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHH
Confidence 8999999999998876665443
No 4
>d1fngb2 d.19.1.1 (B:4-92) Class II MHC beta chain, N-terminal domain {Mouse (Mus musculus), I-EK [TaxId: 10090]}
Probab=9.33 E-value=1e+02 Score=23.90 Aligned_cols=34 Identities=18% Similarity=0.248 Sum_probs=29.9
Q ss_pred hhhHHHHHHHHhhcccHHHHHHHHhhhhc--------ccccc
Q 011038 432 MSCGYVIVLVASQVPQVMDILLGEFHRAC--------IYTVP 465 (495)
Q Consensus 432 FalAeVIv~VaaQ~Pe~~DILLAkFHkvC--------pYTVP 465 (495)
.+++.+..--|..-|+++.-.-|.....| |||||
T Consensus 48 TelG~~~Ae~wNsq~~~Le~~Ra~vd~~CrhNy~v~~~f~V~ 89 (89)
T d1fngb2 48 TELGRPDAENWNSQPEFLEQKRAEVDTVCRHNYEIFDNFLVP 89 (89)
T ss_dssp SGGGHHHHHHHHTCHHHHHHHHHHHHHTHHHHHHHHTTTTTT
T ss_pred CCcccccHhHhcCCHHHHHHHHhccCccccCCcceeeeeecC
Confidence 56889999999999999999999999999 56666
No 5
>d2bhua2 b.71.1.1 (A:531-602) Glycosyltrehalose trehalohydrolase {Deinococcus radiodurans [TaxId: 1299]}
Probab=8.88 E-value=28 Score=26.27 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=16.6
Q ss_pred hccccccc-ccchhhhHhhhccc
Q 011038 459 ACIYTVPK-HIVFSEFRLHLNQK 480 (495)
Q Consensus 459 vCpYTVPk-yi~~~~~r~~~~~k 480 (495)
.-|||||. .+--++||.++.--
T Consensus 42 ~lpfs~p~~~llhsegre~~~l~ 64 (72)
T d2bhua2 42 KLPFTVPRRLLLHTEGREDLTLG 64 (72)
T ss_dssp CCSSCCCCCEEEETTCCSSSEEC
T ss_pred cCCccchHhheeecccchhhccc
Confidence 56999999 45568999886543
No 6
>d2p6va1 a.277.1.1 (A:582-678) Transcription initiation factor TFIID subunit 4, TAF4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.84 E-value=4.2e+02 Score=20.71 Aligned_cols=66 Identities=20% Similarity=0.141 Sum_probs=37.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhhcccccccchhhhhhhhhhhhhhccchhHHHhHHHHHHHHhcCCCCc
Q 011038 337 TESALNIEQKRLQKLKELDEENQSLKLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNPLCP 407 (495)
Q Consensus 337 a~sAl~~E~~Rlk~LkEL~e~n~~LK~~lnke~~d~rRqI~K~VgQIS~tkeqVk~Ks~ELvqiLn~pq~P 407 (495)
+...++..+.+..-|..|.++-.....+ -++-..++..|..+-+++-....=+..|...|+.|..|
T Consensus 4 ~~~~~~nv~Kck~FL~tLi~l~s~~~~s-----pe~~~~Vr~LV~~L~~~~i~~EEF~~~Lq~~lns~pqP 69 (97)
T d2p6va1 4 ATETMENVKKCKNFLSTLIKLASSGKQS-----TETAANVKELVQNLLDGKIEAEDFTSRLYRELNSSPQP 69 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSSC-----HHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHTTCCCCT
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCCCC-----chHHHHHHHHHHHHHhCCcCHHHHHHHHHHHhcCCCCc
Confidence 4445566665666666665554332222 23344555566666665555666677777778877433
No 7
>d1n62a2 d.15.4.2 (A:3-81) Carbone monoxide (CO) dehydrogenase iron-sulfur protein, N-domain {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]}
Probab=8.71 E-value=46 Score=25.22 Aligned_cols=20 Identities=15% Similarity=0.265 Sum_probs=15.9
Q ss_pred ccCc--cccCCCCCCChHHHHH
Q 011038 13 KVDG--IAIDPEPDWSFDALLS 32 (495)
Q Consensus 13 ~~~~--~~~dp~p~ws~~~l~~ 32 (495)
.+|| +.+|++|+|++-++|.
T Consensus 7 ~lNG~~~~~~v~p~~~Ll~~LR 28 (79)
T d1n62a2 7 TINGHPVEALVEPRTLLIHFIR 28 (79)
T ss_dssp EETTEEEEEEECTTCBHHHHHH
T ss_pred EECCEEEEEecCCCCcHHHHHh
Confidence 3566 6778999999988875
No 8
>d1st6a5 a.24.9.1 (A:489-646) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=8.53 E-value=2.3e+02 Score=23.80 Aligned_cols=77 Identities=12% Similarity=0.199 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhhhhccc-----------------ccccchhhhhhhhhh-hhhhccchhHHHhHHHHHHHHhcCCC-Cc-
Q 011038 348 LQKLKELDEENQSLKLS-----------------SNEDFSGYEKDISRL-IRQIRGLKDNVRTKASELVKILNNPL-CP- 407 (495)
Q Consensus 348 lk~LkEL~e~n~~LK~~-----------------lnke~~d~rRqI~K~-VgQIS~tkeqVk~Ks~ELvqiLn~pq-~P- 407 (495)
+.+-.+|..+...|-.. ++..++++++.|.+. ++||+.+...+.+....|+.....|. .|
T Consensus 54 l~~C~el~~l~~~LadLr~~G~G~sPeA~~lA~qi~~kL~dL~~~v~~Avv~~v~d~f~dt~tpl~~l~~Aa~a~~~~p~ 133 (158)
T d1st6a5 54 LAKCDRVDQLAAQLADLAARGEGESPQARAIAAQLQDSLKDLKARMQEAMTQEVSDVFSDTTTPIKLLAVAATAPSDTPN 133 (158)
T ss_dssp HHHHHHHHHHHHHHHSSTTSSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSHHHHHHHHHHHSCSCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhCCCCCCC
Confidence 55666666666665311 334456677777775 47888777777778777877776653 23
Q ss_pred --hHH-----HHHHHHHHHHhhhc
Q 011038 408 --QSI-----SLATFSKKVVSRCE 424 (495)
Q Consensus 408 --~~f-----ALnifAKKIISQ~E 424 (495)
..| .+--+|++|+.-+|
T Consensus 134 re~~~~e~a~~f~~~a~~~~~~ae 157 (158)
T d1st6a5 134 REEVFEERAANFENHAARLGATAE 157 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhc
Confidence 122 35558888887664
No 9
>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.22 E-value=1e+02 Score=26.15 Aligned_cols=33 Identities=21% Similarity=0.064 Sum_probs=23.0
Q ss_pred ccccccc-ccchhhhHhhhcccccchhHHHHHHhh
Q 011038 460 CIYTVPK-HIVFSEFRLHLNQKRLTTKLLDTVRKM 493 (495)
Q Consensus 460 CpYTVPk-yi~~~~~r~~~~~kr~~~k~~~~~~~~ 493 (495)
+|.-++. ++.++--+--|||+ |...|+|++++|
T Consensus 303 rp~~~~~~~~d~skak~~Lgw~-P~~sl~e~i~~~ 336 (347)
T d1t2aa_ 303 RPTEVDFLQGDCTKAKQKLNWK-PRVAFDELVREM 336 (347)
T ss_dssp CSSCCCBCCBCCHHHHHHHCCC-CCSCHHHHHHHH
T ss_pred CCCCcCEeeECHHHHHHHHCCC-cCCCHHHHHHHH
Confidence 4444444 34667778789997 567788888876
No 10
>d1dgja2 d.15.4.2 (A:1-80) Aldehyde oxidoreductase, N-terminal domain {Desulfovibrio desulfuricans [TaxId: 876]}
Probab=7.90 E-value=56 Score=24.85 Aligned_cols=21 Identities=19% Similarity=0.183 Sum_probs=16.6
Q ss_pred ccCc--cccCCCCCCChHHHHHH
Q 011038 13 KVDG--IAIDPEPDWSFDALLSE 33 (495)
Q Consensus 13 ~~~~--~~~dp~p~ws~~~l~~e 33 (495)
.+|| +.+|.+|+|++-++|.+
T Consensus 7 ~vNG~~~~~~v~p~~~Ll~~LR~ 29 (80)
T d1dgja2 7 IVNGMARRLLVSPNDLLVDVLRS 29 (80)
T ss_dssp EETTBCCEEEECTTCBHHHHHHH
T ss_pred EECCEEEEEEcCCCCCHHHHHhh
Confidence 3677 77889999999888753
Done!