BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 011039
         (495 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4ATG|A Chain A, Taf6 C-Terminal Domain From Antonospora Locustae
          Length = 196

 Score =  105 bits (261), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 59/166 (35%), Positives = 98/166 (59%), Gaps = 10/166 (6%)

Query: 121 HILSRELQLYFDKITELAVSRSDSVLFKQALVSLATDSGLHPLVPYFTYFVADEVSRGLN 180
           H+L +ELQLYFDKI  L++ +SD  +   A+  L  +SGL  LVPYF   +++ + +   
Sbjct: 3   HMLPKELQLYFDKI--LSMIKSD--MKDIAIECLEKESGLQQLVPYFIQHISELILKSFK 58

Query: 181 NYSLLFALMRVVWNLLQNPHIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAK 240
              +L   + + ++L++N H+ I+PYLHQ++PS++TC++    G  + D+  ++R  +A 
Sbjct: 59  EAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVI----GKSIVDD--DVRKMSAD 112

Query: 241 LVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLA 286
           +V  I   Y   Y TL  R+ KTL    +DP R+    YGA+  L+
Sbjct: 113 IVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLS 158


>pdb|2B9E|A Chain A, Human Nsun5 Protein
          Length = 309

 Score = 29.6 bits (65), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 8/112 (7%)

Query: 310 PEMLLEKQKNEVKRHEAWRVYGALLQAAGQCIYDRLKIFPPLSSL---PARSVWKTNGIV 366
           PE+L+   + ++  H  +R    +LQ    C+   L   PP S +    A    KT+ + 
Sbjct: 62  PELLVFPAQTDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLA 121

Query: 367 ATLSNKRKT-SMDLEEQPPLKKIATDGPVDAVSTSSMPTPMEEDATAATPLD 417
           A L N+ K  + DL+     K++A+   + A +  S     EED  A +P D
Sbjct: 122 ALLKNQGKIFAFDLDA----KRLASMATLLARAGVSCCELAEEDFLAVSPSD 169


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.134    0.395 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,190,194
Number of Sequences: 62578
Number of extensions: 571526
Number of successful extensions: 1088
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1084
Number of HSP's gapped (non-prelim): 5
length of query: 495
length of database: 14,973,337
effective HSP length: 103
effective length of query: 392
effective length of database: 8,527,803
effective search space: 3342898776
effective search space used: 3342898776
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)