BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011039
(495 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O74462|TAF6_SCHPO Transcription initiation factor TFIID subunit 6
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=taf6 PE=1 SV=1
Length = 452
Score = 285 bits (728), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 152/347 (43%), Positives = 218/347 (62%), Gaps = 24/347 (6%)
Query: 1 MRHSRRTTLTTDDVDEALKLRNVEPVYGFASGGPLRFRRAI---GYRDLFYLDDKDVEFK 57
M HS+RT LT+ D+ AL+ NVEP+YGF + PL F A G L+YLDD++V+F+
Sbjct: 50 MVHSKRTVLTSADISSALRTLNVEPLYGFNNSRPLEFHEAAVGAGQNSLYYLDDEEVDFE 109
Query: 58 DVIEAPLPRAPLDTSIVCHWLAIEGVQPVIPEN-APVQAIAA--PSNGTNN--------- 105
+I APLP+ P + S HWLAIEGVQP IP+N P S GT+
Sbjct: 110 KIINAPLPKVPRNISYSAHWLAIEGVQPAIPQNPTPSDHTVGEWASKGTSGVMPGASTAA 169
Query: 106 -EQKDGLP----VEIKLPVKHILSRELQLYFDKITELAVSRSDSVLFKQALVSLATDSGL 160
E ++G+ VEIK V+H+LS+ELQLYF++IT + ++ L AL SL D GL
Sbjct: 170 KEARNGVTSMDNVEIKPLVRHVLSKELQLYFERITSALLDETNVELRDAALSSLRDDPGL 229
Query: 161 HPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHIQIEPYLHQLMPSVVTCLVA 220
H L+PYF F++D V+R L N +L LM + W LL NP++ +EPY+ QLMPS++TCLVA
Sbjct: 230 HQLLPYFIMFLSDSVTRNLGNLVVLTTLMHMAWALLDNPNLFVEPYVQQLMPSILTCLVA 289
Query: 221 KRLGNRLADN-HWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHY 279
KRLG+ ++ H+ LRD A L+ +C R+G+VY TL+ R+T+T L A LD + + HY
Sbjct: 290 KRLGSDPNNHEHYALRDLAAFLLGIVCDRFGNVYYTLKPRVTRTALKAFLDNTKPYSTHY 349
Query: 280 GAVQGLAALGPNVVRLLLLPNLGPYLSLLEPEMLLEKQKNEVKRHEA 326
GA++GL +G +R+L++PN+ Y L+ + ++ NE + +EA
Sbjct: 350 GAIKGLKTMGKEAIRVLVVPNIKVYEVLVRKTL---EKGNEEEIYEA 393
>sp|Q91857|TAF6_XENLA Transcription initiation factor TFIID subunit 6 OS=Xenopus laevis
GN=taf6 PE=2 SV=3
Length = 618
Score = 250 bits (638), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 139/335 (41%), Positives = 200/335 (59%), Gaps = 35/335 (10%)
Query: 1 MRHSRRTTLTTDDVDEALKLRNVEPVYGFASGGPLRFRRAIGY-RDLFYLDDKDVEFKDV 59
M +R LT D+D ALKL+NVEP+YGF L FR A G R+L + ++K+ + D+
Sbjct: 56 MHVGKRQKLTPSDIDAALKLKNVEPIYGFHPKEFLPFRYASGGGRELHFYEEKETDLSDI 115
Query: 60 IEAPLPRAPLDTSIVCHWLAIEGVQPVIPENAP--------VQA-----IAAPSN----- 101
I PLPR PLD S+ HWL+IEGVQP IPEN P +A +A P
Sbjct: 116 ISTPLPRVPLDVSLKAHWLSIEGVQPAIPENPPPVPKEQQKTEATEPLKVAKPGQEEGLP 175
Query: 102 --------GTNNEQK----DGLPVEIKLPVKHILSRELQLYFDKITELAVSRSDSVLFKQ 149
G E+K +G P+++K H LS E QLY+ +ITE V ++ +
Sbjct: 176 GKGQGSGEGKGKEKKTAILEGAPLKLKPRSIHELSVEQQLYYKEITEACVGSCEAK-RAE 234
Query: 150 ALVSLATDSGLHPLVPYFTYFVADEVSRGL--NNYSLLFALMRVVWNLLQNPHIQIEPYL 207
AL S+ATD GL+ ++P F+ F+++ V + NN +LL LMR+V L+ NP + +E YL
Sbjct: 235 ALQSIATDPGLYQMLPRFSTFISEGVRVNVVQNNLALLIYLMRMVKALMDNPTLYLEKYL 294
Query: 208 HQLMPSVVTCLVAKRLGNRL-ADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLN 266
H+L+P+V+TC+V+++L R DNHW LRDF A+L+A ICK + N +Q+R+TKT
Sbjct: 295 HELIPAVMTCIVSRQLCLRPDVDNHWALRDFAARLIAQICKNFSTTTNNIQSRITKTFTK 354
Query: 267 ALLDPKRALTQHYGAVQGLAALGPNVVRLLLLPNL 301
+D + T YG++ GLA LGP+VV+ L++P L
Sbjct: 355 TWVDDRTPWTTRYGSIAGLAELGPDVVKTLIVPRL 389
>sp|Q62311|TAF6_MOUSE Transcription initiation factor TFIID subunit 6 OS=Mus musculus
GN=Taf6 PE=2 SV=1
Length = 678
Score = 248 bits (634), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 138/340 (40%), Positives = 201/340 (59%), Gaps = 40/340 (11%)
Query: 1 MRHSRRTTLTTDDVDEALKLRNVEPVYGFASGGPLRFRRAIGY-RDLFYLDDKDVEFKDV 59
M +R LTT D+D ALKL+NVEP+YGF + + FR A G R+L++ ++K+V+ D+
Sbjct: 58 MHMGKRQKLTTSDIDYALKLKNVEPLYGFHAQEFIPFRFASGGGRELYFYEEKEVDLSDI 117
Query: 60 IEAPLPRAPLDTSIVCHWLAIEGVQPVIPENAP--------VQAI--------------- 96
I PLPR PLD + HWL+IEG QP IPEN P +A
Sbjct: 118 INTPLPRVPLDVCLKAHWLSIEGCQPAIPENPPPAPKEQQKAEATEPLKSAKPGQEEDGP 177
Query: 97 -------AAPSNGTNNEQK-----DGLPVEIKLPVKHILSRELQLYFDKITELAVSRSDS 144
AA ++G E+K +G P +K H LS E QLY+ +ITE V ++
Sbjct: 178 LKGKGQGAAAADGKGKEKKAPPLLEGAPFRLKPRSIHELSVEQQLYYKEITEACVGSCEA 237
Query: 145 VLFKQALVSLATDSGLHPLVPYFTYFVADEVSRGL--NNYSLLFALMRVVWNLLQNPHIQ 202
+AL S+ATD GL+ ++P F+ F+++ V + NN +LL LMR+V L+ NP +
Sbjct: 238 KR-AEALQSIATDPGLYQMLPRFSTFISEGVRVNVVQNNLALLIYLMRMVKALMDNPTLY 296
Query: 203 IEPYLHQLMPSVVTCLVAKRLGNRL-ADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLT 261
+E Y+H+L+P+V+TC+V+++L R DNHW LRDF A+LVA ICK + N +Q+R+T
Sbjct: 297 LEKYVHELIPAVMTCIVSRQLCLRPDVDNHWALRDFAARLVAQICKHFSTTTNNIQSRIT 356
Query: 262 KTLLNALLDPKRALTQHYGAVQGLAALGPNVVRLLLLPNL 301
KT + +D K T YG++ GLA LG +V++ L+LP L
Sbjct: 357 KTFTKSWVDEKTPWTTRYGSIAGLAELGHDVIKTLILPRL 396
>sp|Q63801|TAF6_RAT Transcription initiation factor TFIID subunit 6 OS=Rattus
norvegicus GN=Taf6 PE=2 SV=1
Length = 678
Score = 248 bits (634), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 138/340 (40%), Positives = 201/340 (59%), Gaps = 40/340 (11%)
Query: 1 MRHSRRTTLTTDDVDEALKLRNVEPVYGFASGGPLRFRRAIGY-RDLFYLDDKDVEFKDV 59
M +R LTT D+D ALKL+NVEP+YGF + + FR A G R+L++ ++K+V+ D+
Sbjct: 58 MHMGKRQKLTTSDIDYALKLKNVEPLYGFHAQEFIPFRFASGGGRELYFYEEKEVDLSDI 117
Query: 60 IEAPLPRAPLDTSIVCHWLAIEGVQPVIPENAP--------VQAI--------------- 96
I PLPR PLD + HWL+IEG QP IPEN P +A
Sbjct: 118 INTPLPRVPLDVCLKAHWLSIEGCQPAIPENPPPAPKEQQKAEATEPLKSAKPGQEEDGP 177
Query: 97 -------AAPSNGTNNEQK-----DGLPVEIKLPVKHILSRELQLYFDKITELAVSRSDS 144
AA ++G E+K +G P +K H LS E QLY+ +ITE V ++
Sbjct: 178 LKGKGQGAAAADGKGKEKKAPPLLEGAPFRLKPRSIHELSVEQQLYYKEITEACVGSCEA 237
Query: 145 VLFKQALVSLATDSGLHPLVPYFTYFVADEVSRGL--NNYSLLFALMRVVWNLLQNPHIQ 202
+AL S+ATD GL+ ++P F+ F+++ V + NN +LL LMR+V L+ NP +
Sbjct: 238 KR-AEALQSIATDPGLYQMLPRFSTFISEGVRVNVVQNNLALLIYLMRMVKALMDNPTLY 296
Query: 203 IEPYLHQLMPSVVTCLVAKRLGNRL-ADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLT 261
+E Y+H+L+P+V+TC+V+++L R DNHW LRDF A+LVA ICK + N +Q+R+T
Sbjct: 297 LEKYVHELIPAVMTCIVSRQLCLRPDVDNHWALRDFAARLVAQICKHFSTTTNNIQSRIT 356
Query: 262 KTLLNALLDPKRALTQHYGAVQGLAALGPNVVRLLLLPNL 301
KT + +D K T YG++ GLA LG +V++ L+LP L
Sbjct: 357 KTFTKSWVDEKTPWTTRYGSIAGLAELGHDVIKTLILPRL 396
>sp|P49848|TAF6_HUMAN Transcription initiation factor TFIID subunit 6 OS=Homo sapiens
GN=TAF6 PE=1 SV=1
Length = 677
Score = 247 bits (631), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 137/340 (40%), Positives = 201/340 (59%), Gaps = 40/340 (11%)
Query: 1 MRHSRRTTLTTDDVDEALKLRNVEPVYGFASGGPLRFRRAIGY-RDLFYLDDKDVEFKDV 59
M +R LTT D+D ALKL+NVEP+YGF + + FR A G R+L++ ++K+V+ D+
Sbjct: 58 MHMGKRQKLTTSDIDYALKLKNVEPLYGFHAQEFIPFRFASGGGRELYFYEEKEVDLSDI 117
Query: 60 IEAPLPRAPLDTSIVCHWLAIEGVQPVIPENAP--------VQAI--------------- 96
I PLPR PLD + HWL+IEG QP IPEN P +A
Sbjct: 118 INTPLPRVPLDVCLKAHWLSIEGCQPAIPENPPPAPKEQQKAEATEPLKSAKPGQEEDGP 177
Query: 97 -------AAPSNGTNNEQK-----DGLPVEIKLPVKHILSRELQLYFDKITELAVSRSDS 144
A ++G E+K +G P+ +K H LS E QLY+ +ITE V ++
Sbjct: 178 LKGKGQGATTADGKGKEKKAPPLLEGAPLRLKPRSIHELSVEQQLYYKEITEACVGSCEA 237
Query: 145 VLFKQALVSLATDSGLHPLVPYFTYFVADEVSRGL--NNYSLLFALMRVVWNLLQNPHIQ 202
+AL S+ATD GL+ ++P F+ F+++ V + NN +LL LMR+V L+ NP +
Sbjct: 238 KR-AEALQSIATDPGLYQMLPRFSTFISEGVRVNVVQNNLALLIYLMRMVKALMDNPTLY 296
Query: 203 IEPYLHQLMPSVVTCLVAKRLGNRL-ADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLT 261
+E Y+H+L+P+V+TC+V+++L R DNHW LRDF A+LVA ICK + N +Q+R+T
Sbjct: 297 LEKYVHELIPAVMTCIVSRQLCLRPDVDNHWALRDFAARLVAQICKHFSTTTNNIQSRIT 356
Query: 262 KTLLNALLDPKRALTQHYGAVQGLAALGPNVVRLLLLPNL 301
KT + +D K T YG++ GLA LG +V++ L+LP L
Sbjct: 357 KTFTKSWVDEKTPWTTRYGSIAGLAELGHDVIKTLILPRL 396
>sp|P49847|TAF6_DROME Transcription initiation factor TFIID subunit 6 OS=Drosophila
melanogaster GN=Taf6 PE=1 SV=2
Length = 606
Score = 234 bits (598), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 129/340 (37%), Positives = 194/340 (57%), Gaps = 28/340 (8%)
Query: 1 MRHSRRTTLTTDDVDEALKLRNVEPVYGFASGGPLRFRRAIGY-RDLFYLDDKDVEFKDV 59
M H++R L+ D+D +LK+RNVEP YGF + + FR A G R+L + +DK+++ ++
Sbjct: 65 MNHAKRQKLSVRDIDMSLKVRNVEPQYGFVAKDFIPFRFASGGGRELHFTEDKEIDLGEI 124
Query: 60 IEAPLPRAPLDTSIVCHWLAIEGVQPVIPENAP-----------------------VQAI 96
+ PLD ++ HW +EGVQP +PEN P A
Sbjct: 125 TSTNSVKIPLDLTLRSHWFVVEGVQPTVPENPPPLSKDSQLLDSVNPVIKMDQGLNKDAA 184
Query: 97 AAPSNGTNNEQKDGLPVEIKLPVKHILSRELQLYFDKITELAVSRSDSVLFKQALVSLAT 156
P+ G ++ K+ + +K H LS E QLY+ +ITE V SD +AL SL +
Sbjct: 185 GKPTTGKIHKLKNVETIHVKQLATHELSVEQQLYYKEITEACVG-SDEPRRGEALQSLGS 243
Query: 157 DSGLHPLVPYFTYFVADEVSRGL--NNYSLLFALMRVVWNLLQNPHIQIEPYLHQLMPSV 214
D GLH ++P F+A+ V + NN +LL LMR+V LL NP + +E YLH+L+PSV
Sbjct: 244 DPGLHEMLPRMCTFIAEGVKVNVVQNNLALLIYLMRMVRALLDNPSLFLEKYLHELIPSV 303
Query: 215 VTCLVAKRLGNR-LADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKR 273
+TC+V+K+L R DNHW LRDF ++L+A ICK + + N LQTR+T+ AL + K
Sbjct: 304 MTCIVSKQLCMRPELDNHWALRDFASRLMAQICKNFNTLTNNLQTRVTRIFSKALQNDKT 363
Query: 274 ALTQHYGAVQGLAALGPNVVRLLLLPNLGPYLSLLEPEML 313
L+ YG++ GL+ LG V+++ ++P L +EP +L
Sbjct: 364 HLSSLYGSIAGLSELGGEVIKVFIIPRLKFISERIEPHLL 403
>sp|P53040|TAF6_YEAST Transcription initiation factor TFIID subunit 6 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TAF6 PE=1
SV=1
Length = 516
Score = 219 bits (559), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 126/353 (35%), Positives = 198/353 (56%), Gaps = 57/353 (16%)
Query: 2 RHSRRTTLTTDDVDEALKLRNVEPVYGFASGGPLR----FRR--AIGYRDLFYLDDKDVE 55
RHS+R LTTDDV +AL++ NVEP+YG+ G + F + G + ++YLD+++V+
Sbjct: 57 RHSKRDVLTTDDVSKALRVLNVEPLYGYYDGSEVNKAVSFSKVNTSGGQSVYYLDEEEVD 116
Query: 56 FKDVIEAPLPRAPLDTSIVCHWLAIEGVQPVIPEN------------------------- 90
F +I PLP+ P + HWLA+EGVQP I +N
Sbjct: 117 FDRLINEPLPQVPRLPTFTTHWLAVEGVQPAIIQNPNLNDIRVSQPPFIRGAIVTALNDN 176
Query: 91 ---APVQAIAAPSNGTN-------NEQKDGLPVEIKLPVKHILSRELQLYFDKI--TELA 138
PV + A ++ T+ + K G E+K VKH+LS+ELQ+YF+K+ T A
Sbjct: 177 SLQTPVTSTTASASVTDTGASQHLSNVKPGQNTEVKPLVKHVLSKELQIYFNKVISTLTA 236
Query: 139 VSRSDSV---LFKQALVSLATDSGLHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNL 195
S++D + + AL SL TDSGLH LVPYF F+A+++++ L++ LL ++ ++++L
Sbjct: 237 KSQADEAAQHMKQAALTSLRTDSGLHQLVPYFIQFIAEQITQNLSDLQLLTTILEMIYSL 296
Query: 196 LQNPHIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWE-----------LRDFTAKLVAA 244
L N I ++PY+H LMPS++T L+AK+LG D+ + LRDF A L+
Sbjct: 297 LSNTSIFLDPYIHSLMPSILTLLLAKKLGGSPKDDSPQEIHEFLERTNALRDFAASLLDY 356
Query: 245 ICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGPNVVRLLL 297
+ K++ Y +L+ R+T+TLL LD R +YG ++G++ L +R L
Sbjct: 357 VLKKFPQAYKSLKPRVTRTLLKTFLDINRVFGTYYGCLKGVSVLEGESIRFFL 409
>sp|Q8R2K4|TAF6L_MOUSE TAF6-like RNA polymerase II p300/CBP-associated factor-associated
factor 65 kDa subunit 6L OS=Mus musculus GN=Taf6l PE=2
SV=1
Length = 616
Score = 132 bits (333), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 103/339 (30%), Positives = 171/339 (50%), Gaps = 31/339 (9%)
Query: 1 MRHSRRTTLTTDDVDEALKLRNVEPVYGFASGGPLRFRRAIGYRDLFYLDDKDVEFKDVI 60
M+H++R LT +D + AL+ +VE V G+ S L R A DL++ +D++V ++
Sbjct: 55 MKHTKRRKLTVEDFNRALRWSSVEAVCGYGSQEALPLRPAR-EGDLYFPEDREVSLVELA 113
Query: 61 EAP-LPRAPLDTSIVCHWLAIEGVQPVIPENAPVQAIAAPSNGTNNEQKDGLPVEIKLPV 119
A +P+ +T++ H ++G + P+ + A+++
Sbjct: 114 LATNIPKGCAETAVRVHVSYLDGKGNLAPQGSVPSAVSS--------------------- 152
Query: 120 KHILSRELQLYFDKITELAVSRSDSVLFKQALVSLATDSGLHPLVPYFTYFVADEVSRGL 179
L+ +L Y+ ++T AV D L K AL L T+S + L+PYF Y V+ V
Sbjct: 153 ---LTDDLLKYYQQVTR-AVLGDDPQLMKVALQDLQTNSKIAALLPYFVYVVSG-VKSVS 207
Query: 180 NNYSLLFALMRVVWNLLQNPHIQIEPYLHQLMPSVVTCLVAKRLG--NRLADNHWELRDF 237
++ L L++V +L++NPH+ + PY+ L+ SV+ C++ N L D HW LRD
Sbjct: 208 HDLEQLHRLLQVARSLIRNPHLCLGPYVRSLVGSVLYCVLEPLAASINPLND-HWTLRDG 266
Query: 238 TAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGPNVVRLLL 297
A L++ I +G + + L ++ +L L DP R L HYGAV GL ALG V +L
Sbjct: 267 AALLLSHIFWTHGDLVSGLYQQILLSLQKVLTDPVRPLCSHYGAVVGLHALGWKAVERVL 326
Query: 298 LPNLGPYLSLLEPEMLLEKQKNEVKRHEAWRVYGALLQA 336
P+L Y + L+ + N + + +VYGA+L A
Sbjct: 327 YPHLPTYWTNLQAVLDDYSVSNAQVKADGHKVYGAILVA 365
>sp|Q9Y6J9|TAF6L_HUMAN TAF6-like RNA polymerase II p300/CBP-associated factor-associated
factor 65 kDa subunit 6L OS=Homo sapiens GN=TAF6L PE=1
SV=1
Length = 622
Score = 128 bits (322), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 102/339 (30%), Positives = 169/339 (49%), Gaps = 31/339 (9%)
Query: 1 MRHSRRTTLTTDDVDEALKLRNVEPVYGFASGGPLRFRRAIGYRDLFYLDDKDVEFKDVI 60
M+H++R LT +D + AL+ +VE V G+ S L R A +L++ +D++V ++
Sbjct: 55 MKHTKRRKLTVEDFNRALRWSSVEAVCGYGSQEALPMRPAR-EGELYFPEDREVNLVELA 113
Query: 61 EAP-LPRAPLDTSIVCHWLAIEGVQPVIPENAPVQAIAAPSNGTNNEQKDGLPVEIKLPV 119
A +P+ +T++ H ++G + P+ + A+++
Sbjct: 114 LATNIPKGCAETAVRVHVSYLDGKGNLAPQGSVPSAVSS--------------------- 152
Query: 120 KHILSRELQLYFDKITELAVSRSDSVLFKQALVSLATDSGLHPLVPYFTYFVADEVSRGL 179
L+ +L Y+ ++T AV D L K AL L T+S + L+PYF Y V+ V
Sbjct: 153 ---LTDDLLKYYHQVTR-AVLGDDPQLMKVALQDLQTNSKIGALLPYFVYVVSG-VKSVS 207
Query: 180 NNYSLLFALMRVVWNLLQNPHIQIEPYLHQLMPSVVTCLVAKRLG--NRLADNHWELRDF 237
++ L L++V +L +NPH+ + PY+ L+ SV+ C++ N L D HW LRD
Sbjct: 208 HDLEQLHRLLQVARSLFRNPHLCLGPYVRCLVGSVLYCVLEPLAASINPLND-HWTLRDG 266
Query: 238 TAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGPNVVRLLL 297
A L++ I +G + + L + +L L DP R L HYGAV GL ALG V +L
Sbjct: 267 AALLLSHIFWTHGDLVSGLYQHILLSLQKILADPVRPLCCHYGAVVGLHALGWKAVERVL 326
Query: 298 LPNLGPYLSLLEPEMLLEKQKNEVKRHEAWRVYGALLQA 336
P+L Y + L+ + N + + +VYGA+L A
Sbjct: 327 YPHLSTYWTNLQAVLDDYSVSNAQVKADGHKVYGAILVA 365
>sp|Q6FE36|SYM_ACIAD Methionine--tRNA ligase OS=Acinetobacter sp. (strain ADP1) GN=metG
PE=3 SV=1
Length = 685
Score = 36.2 bits (82), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 72/172 (41%), Gaps = 26/172 (15%)
Query: 201 IQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKL----------VAAICKRY- 249
I+ E YL L P + A +L +++ D+ L DF K+ +A+ C ++
Sbjct: 339 IKAETYLQHLNPEYLRYYFASKLSDKVEDSDLNLDDFVQKVNSDLVGKVVNIASRCAKFI 398
Query: 250 -GHVYNTLQTRLTK-TLLNALLDPKRALTQHYGAVQGLAALGPNVVRLLLLPNLGPYLSL 307
NTL + L+ + +D ++ Q Y A + AA+ + L Y+
Sbjct: 399 NSSFNNTLSANCAEPELVQSFIDAGDSIAQAYEAREFSAAIRE---IMALADKANQYIDE 455
Query: 308 LEPEMLLEKQKNEVKRHEAWRVYGALLQAAGQCIYDRLKIF--PPLSSLPAR 357
+P L +++ E + H V G ++ +L I+ P L +L A+
Sbjct: 456 KKPWALAKQEGQEQQVHNVCSV--------GINLFRQLAIYLSPVLPTLAAQ 499
>sp|P39993|GEA2_YEAST ARF guanine-nucleotide exchange factor 2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=GEA2 PE=1
SV=1
Length = 1459
Score = 35.4 bits (80), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 57/112 (50%), Gaps = 16/112 (14%)
Query: 269 LDPKRALTQHYGAVQGLA--ALGPNVVRLLLLPNLGPYLSLLEPEMLLEKQKNEVKRHEA 326
LD + T+ +Q A G VVR L NL LSL+ PE NE+K +
Sbjct: 306 LDIVQKTTRSNSRIQAYADDNYGLPVVRQYL--NL--LLSLIAPE-------NELKHSYS 354
Query: 327 WRVYG-ALLQAAGQCIYDRLKIFPPLSSLPARSVWKTNGIVATLSNKRKTSM 377
R++G L+Q A + DRL+++P L +L + ++K+ I+ + N K S+
Sbjct: 355 TRIFGLELIQTALEISGDRLQLYPRLFTLISDPIFKS--ILFIIQNTTKLSL 404
>sp|Q06852|SLAP1_CLOTH Cell surface glycoprotein 1 OS=Clostridium thermocellum (strain ATCC
27405 / DSM 1237) GN=olpB PE=4 SV=2
Length = 2313
Score = 34.3 bits (77), Expect = 2.5, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 382 QPPLKKIATDGPVDAVSTSSMPTPMEEDATAATPLDNSDADHPSPSSVQIPPDSGSESRS 441
+ P + I TD P D + S PTP +E + P + +D P+PS P D + S +
Sbjct: 1545 ETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEP---TPSDEPTPSDEPTPSDEPTPSET 1601
Query: 442 KRD 444
+
Sbjct: 1602 PEE 1604
Score = 34.3 bits (77), Expect = 2.5, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 382 QPPLKKIATDGPVDAVSTSSMPTPMEEDATAATPLDNSDADHPSPSSVQIPPDSGSESRS 441
+ P + I TD P D + S PTP +E + P + +D P+PS P D + S +
Sbjct: 1600 ETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEP---TPSDEPTPSDEPTPSDEPTPSET 1656
Query: 442 KRD 444
+
Sbjct: 1657 PEE 1659
Score = 34.3 bits (77), Expect = 2.5, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 382 QPPLKKIATDGPVDAVSTSSMPTPMEEDATAATPLDNSDADHPSPSSVQIPPDSGSESRS 441
+ P + I TD P D + S PTP +E + P + +D P+PS P D + S +
Sbjct: 1913 ETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEP---TPSDEPTPSDEPTPSDEPTPSET 1969
Query: 442 KRD 444
+
Sbjct: 1970 PEE 1972
Score = 33.1 bits (74), Expect = 4.7, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 382 QPPLKKIATDGPVDAVSTSSMPTPMEEDATAATPLDNSDADHPSPSSV---QIPPDSGSE 438
+ P + I TD P D + S PTP +E + P + +D P+PS IP D+ S+
Sbjct: 1416 ETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEP---TPSDEPTPSETPEEPIPTDTPSD 1472
Query: 439 SRSKRDK 445
+ D+
Sbjct: 1473 EPTPSDE 1479
Score = 33.1 bits (74), Expect = 4.7, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 382 QPPLKKIATDGPVDAVSTSSMPTPMEEDATAATPLDNSDADHPSPSSV---QIPPDSGSE 438
+ P + I TD P D + S PTP +E + P + +D P+PS IP D+ S+
Sbjct: 1459 ETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEP---TPSDEPTPSETPEEPIPTDTPSD 1515
Query: 439 SRSKRDK 445
+ D+
Sbjct: 1516 EPTPSDE 1522
Score = 33.1 bits (74), Expect = 4.7, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 382 QPPLKKIATDGPVDAVSTSSMPTPMEEDATAATPLDNSDADHPSPSSV---QIPPDSGSE 438
+ P + I TD P D + S PTP +E + P + +D P+PS IP D+ S+
Sbjct: 1502 ETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEP---TPSDEPTPSETPEEPIPTDTPSD 1558
Query: 439 SRSKRDK 445
+ D+
Sbjct: 1559 EPTPSDE 1565
Score = 33.1 bits (74), Expect = 4.7, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 382 QPPLKKIATDGPVDAVSTSSMPTPMEEDATAATPLDNSDADHPSPSSV---QIPPDSGSE 438
+ P + I TD P D + S PTP +E + P + +D P+PS IP D+ S+
Sbjct: 1655 ETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEP---TPSDEPTPSETPEEPIPTDTPSD 1711
Query: 439 SRSKRDK 445
+ D+
Sbjct: 1712 EPTPSDE 1718
Score = 33.1 bits (74), Expect = 4.7, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 382 QPPLKKIATDGPVDAVSTSSMPTPMEEDATAATPLDNSDADHPSPSSV---QIPPDSGSE 438
+ P + I TD P D + S PTP +E + P + +D P+PS IP D+ S+
Sbjct: 1698 ETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEP---TPSDEPTPSETPEEPIPTDTPSD 1754
Query: 439 SRSKRDK 445
+ D+
Sbjct: 1755 EPTPSDE 1761
Score = 33.1 bits (74), Expect = 4.7, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 382 QPPLKKIATDGPVDAVSTSSMPTPMEEDATAATPLDNSDADHPSPSSV---QIPPDSGSE 438
+ P + I TD P D + S PTP +E + P + +D P+PS IP D+ S+
Sbjct: 1741 ETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEP---TPSDEPTPSETPEEPIPTDTPSD 1797
Query: 439 SRSKRDK 445
+ D+
Sbjct: 1798 EPTPSDE 1804
Score = 33.1 bits (74), Expect = 4.7, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 382 QPPLKKIATDGPVDAVSTSSMPTPMEEDATAATPLDNSDADHPSPSSV---QIPPDSGSE 438
+ P + I TD P D + S PTP +E + P + +D P+PS IP D+ S+
Sbjct: 1784 ETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEP---TPSDEPTPSETPEEPIPTDTPSD 1840
Query: 439 SRSKRDK 445
+ D+
Sbjct: 1841 EPTPSDE 1847
Score = 33.1 bits (74), Expect = 4.7, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 382 QPPLKKIATDGPVDAVSTSSMPTPMEEDATAATPLDNSDADHPSPSSV---QIPPDSGSE 438
+ P + I TD P D + S PTP +E + P + +D P+PS IP D+ S+
Sbjct: 1827 ETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEP---TPSDEPTPSETPEEPIPTDTPSD 1883
Query: 439 SRSKRDK 445
+ D+
Sbjct: 1884 EPTPSDE 1890
Score = 33.1 bits (74), Expect = 4.7, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 382 QPPLKKIATDGPVDAVSTSSMPTPMEEDATAATPLDNSDADHPSPSSV---QIPPDSGSE 438
+ P + I TD P D + S PTP +E + P + +D P+PS IP D+ S+
Sbjct: 1870 ETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEP---TPSDEPTPSETPEEPIPTDTPSD 1926
Query: 439 SRSKRDK 445
+ D+
Sbjct: 1927 EPTPSDE 1933
Score = 32.7 bits (73), Expect = 6.3, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 382 QPPLKKIATDGPVDAVSTSSMPTPMEEDATAATPLDNSDADHPSPSSVQIPPD 434
+ P + I TD P D + S PTP +E + P + +D P+PS P D
Sbjct: 1968 ETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEP---TPSDEPTPSDEPTPSD 2017
Score = 32.3 bits (72), Expect = 8.5, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 382 QPPLKKIATDGPVDAVSTSSMPTPMEEDATAATPLDNSD---ADHPSPSSV---QIPPDS 435
QP K A+D P+ + S PTP +E + P + + +D P+PS IP D+
Sbjct: 1367 QPAPIKAASDEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDT 1426
Query: 436 GSESRSKRDK 445
S+ + D+
Sbjct: 1427 PSDEPTPSDE 1436
>sp|Q9HGL2|YHLA_SCHPO Uncharacterized calcium-binding protein C800.10c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC800.10c PE=4 SV=1
Length = 1116
Score = 33.5 bits (75), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%)
Query: 123 LSRELQLYFDKITELAVSRSDSVLFKQALVSLATDSGLHPLVPYFTYFVADEVSRGLNNY 182
LS E Q FD++ ++A + V+ + V SGL P V + +AD +RG +
Sbjct: 5 LSAEEQTAFDQLFKIADKQDIGVITGEEAVPFLEKSGLAPQVLGQIWQIADAENRGFLTF 64
Query: 183 SLLFALMRVV 192
S MR+V
Sbjct: 65 SGFVIAMRLV 74
>sp|P57838|SYM_PASMU Methionine--tRNA ligase OS=Pasteurella multocida (strain Pm70)
GN=metG PE=3 SV=1
Length = 682
Score = 32.7 bits (73), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 29/64 (45%)
Query: 201 IQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTRL 260
IQ YL L P + A +L NR+ D L DF +L A + ++ ++ + +
Sbjct: 340 IQASTYLRHLAPEYLRYYYAAKLNNRIEDLDLNLEDFVQRLNADVVNKFVNLASRSAGFI 399
Query: 261 TKTL 264
TK
Sbjct: 400 TKRF 403
>sp|O74304|WIN1_SCHPO MAP kinase kinase kinase win1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=win1 PE=1 SV=1
Length = 1436
Score = 32.3 bits (72), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 379 LEEQPPLKKIATDGPVDAVSTSSMPTPMEEDATAATPLDNSDADHPSPSSVQIP 432
+ EQPP + + PVD ++ + + A A +P D S+ HP SS IP
Sbjct: 95 MAEQPPAEALTISTPVDPINIDEL-----DRAYAVSPSDTSNLLHPPTSSSSIP 143
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 189,224,280
Number of Sequences: 539616
Number of extensions: 8174865
Number of successful extensions: 23312
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 23168
Number of HSP's gapped (non-prelim): 138
length of query: 495
length of database: 191,569,459
effective HSP length: 122
effective length of query: 373
effective length of database: 125,736,307
effective search space: 46899642511
effective search space used: 46899642511
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)