Query 011039
Match_columns 495
No_of_seqs 155 out of 231
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 07:25:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011039.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011039hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2549 Transcription initiati 100.0 3E-106 6E-111 849.2 33.9 485 1-495 56-576 (576)
2 COG5095 TAF6 Transcription ini 100.0 3.8E-94 8.2E-99 715.0 18.7 344 1-347 50-413 (450)
3 cd08050 TAF6 TATA Binding Prot 100.0 1.5E-87 3.3E-92 690.5 25.8 292 1-293 44-343 (343)
4 PF07571 DUF1546: Protein of u 100.0 6.1E-31 1.3E-35 224.5 6.2 91 214-304 1-92 (92)
5 PF12755 Vac14_Fab1_bd: Vacuol 97.0 0.0022 4.7E-08 55.7 7.3 77 185-274 7-83 (97)
6 PF12348 CLASP_N: CLASP N term 96.1 0.034 7.3E-07 53.5 9.4 180 145-345 22-216 (228)
7 PF02985 HEAT: HEAT repeat; I 93.0 0.19 4.1E-06 34.4 4.2 30 210-248 1-30 (31)
8 KOG2023 Nuclear transport rece 92.7 1.4 3.1E-05 50.1 12.6 123 185-313 273-444 (885)
9 PF12460 MMS19_C: RNAPII trans 90.7 7 0.00015 41.8 14.9 180 149-336 24-220 (415)
10 PF13513 HEAT_EZ: HEAT-like re 90.3 0.14 3E-06 38.8 1.3 55 232-288 1-55 (55)
11 KOG1242 Protein containing ada 89.5 9.5 0.00021 43.0 15.0 166 156-342 248-451 (569)
12 KOG2171 Karyopherin (importin) 89.4 6.3 0.00014 47.2 14.1 256 128-395 3-308 (1075)
13 KOG0212 Uncharacterized conser 87.9 5.8 0.00012 44.7 11.8 148 131-312 24-176 (675)
14 KOG1824 TATA-binding protein-i 87.6 6.7 0.00014 46.5 12.5 136 160-306 514-654 (1233)
15 cd00020 ARM Armadillo/beta-cat 83.4 5.3 0.00011 33.3 7.2 94 163-271 8-103 (120)
16 PF14911 MMS22L_C: S-phase gen 83.1 11 0.00024 40.4 11.0 119 183-309 226-350 (373)
17 KOG1242 Protein containing ada 82.9 39 0.00084 38.3 15.4 152 129-296 133-292 (569)
18 cd00020 ARM Armadillo/beta-cat 81.9 7.2 0.00016 32.4 7.5 68 210-288 8-76 (120)
19 PF11864 DUF3384: Domain of un 79.1 43 0.00093 36.6 14.1 135 123-267 64-225 (464)
20 PF10508 Proteasom_PSMB: Prote 78.5 44 0.00095 36.9 14.1 159 127-297 35-199 (503)
21 KOG2023 Nuclear transport rece 75.9 13 0.00028 42.9 8.9 194 149-361 377-570 (885)
22 KOG2171 Karyopherin (importin) 75.9 38 0.00083 40.9 13.2 187 148-351 330-517 (1075)
23 PRK09687 putative lyase; Provi 75.5 10 0.00022 38.8 7.6 57 229-291 102-158 (280)
24 PF03378 CAS_CSE1: CAS/CSE pro 75.1 12 0.00025 40.9 8.3 142 202-366 19-176 (435)
25 PF13251 DUF4042: Domain of un 72.7 16 0.00034 35.5 7.7 138 188-337 6-176 (182)
26 cd07979 TAF9 TATA Binding Prot 71.7 3 6.6E-05 37.5 2.4 54 2-73 47-101 (117)
27 PF06371 Drf_GBD: Diaphanous G 68.1 6.7 0.00015 36.4 4.1 78 158-246 107-186 (187)
28 smart00576 BTP Bromodomain tra 66.8 3.4 7.3E-05 34.2 1.6 24 1-24 51-74 (77)
29 PF01602 Adaptin_N: Adaptin N 66.2 62 0.0013 34.8 11.5 68 206-288 111-179 (526)
30 KOG1241 Karyopherin (importin) 64.5 83 0.0018 37.0 12.2 123 162-295 360-485 (859)
31 PF13646 HEAT_2: HEAT repeats; 64.2 42 0.00092 26.8 7.6 51 229-291 11-61 (88)
32 KOG1824 TATA-binding protein-i 63.4 2E+02 0.0042 35.0 15.1 149 180-342 225-409 (1233)
33 PF12074 DUF3554: Domain of un 60.7 46 0.001 34.4 8.9 91 170-270 164-255 (339)
34 PF01602 Adaptin_N: Adaptin N 60.4 99 0.0021 33.2 11.7 131 141-294 315-448 (526)
35 PRK09687 putative lyase; Provi 60.0 26 0.00057 35.8 6.9 64 209-291 159-222 (280)
36 PF12231 Rif1_N: Rap1-interact 56.0 2.8E+02 0.006 29.5 18.1 197 119-335 79-303 (372)
37 PF08506 Cse1: Cse1; InterPro 54.7 34 0.00075 36.5 6.9 143 185-331 159-333 (370)
38 PF12717 Cnd1: non-SMC mitotic 53.2 1.3E+02 0.0029 28.2 10.0 91 231-336 1-93 (178)
39 PF12348 CLASP_N: CLASP N term 52.9 89 0.0019 29.9 9.0 114 125-252 86-211 (228)
40 PF12460 MMS19_C: RNAPII trans 52.7 3E+02 0.0065 29.5 13.7 194 126-340 186-399 (415)
41 PF13513 HEAT_EZ: HEAT-like re 52.4 17 0.00038 27.2 3.2 42 195-245 14-55 (55)
42 PF12830 Nipped-B_C: Sister ch 51.9 1.2E+02 0.0026 29.0 9.6 87 127-268 6-92 (187)
43 PF10274 ParcG: Parkin co-regu 51.6 57 0.0012 31.9 7.2 92 157-251 71-168 (183)
44 PF05004 IFRD: Interferon-rela 50.1 2E+02 0.0043 29.9 11.5 97 202-308 79-183 (309)
45 KOG1823 DRIM (Down-regulated i 49.1 42 0.00092 41.5 7.1 116 188-315 544-662 (1364)
46 KOG1240 Protein kinase contain 48.3 1.3E+02 0.0028 37.3 10.6 157 139-303 471-663 (1431)
47 KOG1967 DNA repair/transcripti 47.9 95 0.0021 37.2 9.4 140 128-274 862-1010(1030)
48 PF03224 V-ATPase_H_N: V-ATPas 47.7 3.3E+02 0.0071 27.9 17.3 198 121-342 24-228 (312)
49 KOG1851 Uncharacterized conser 45.8 86 0.0019 39.5 8.9 113 162-288 1522-1636(1710)
50 PF08623 TIP120: TATA-binding 45.7 1.8E+02 0.0039 28.0 9.6 127 203-337 3-139 (169)
51 KOG1992 Nuclear export recepto 45.1 47 0.001 39.3 6.4 105 254-368 588-699 (960)
52 KOG2032 Uncharacterized conser 43.1 1.3E+02 0.0028 33.8 9.1 106 233-342 273-378 (533)
53 PF12231 Rif1_N: Rap1-interact 42.6 3.8E+02 0.0082 28.5 12.5 144 159-313 32-185 (372)
54 cd07981 TAF12 TATA Binding Pro 42.6 16 0.00035 29.9 1.8 20 2-21 48-67 (72)
55 COG5593 Nucleic-acid-binding p 41.8 38 0.00083 38.2 4.9 121 155-288 162-294 (821)
56 KOG0212 Uncharacterized conser 41.5 3.4E+02 0.0074 31.3 12.0 159 161-335 162-321 (675)
57 COG5064 SRP1 Karyopherin (impo 39.8 1.5E+02 0.0031 32.3 8.5 177 123-314 63-261 (526)
58 KOG1248 Uncharacterized conser 39.7 6.2E+02 0.013 31.4 14.5 222 146-393 713-961 (1176)
59 PF12755 Vac14_Fab1_bd: Vacuol 37.7 1.8E+02 0.0038 25.3 7.5 83 240-328 8-90 (97)
60 PF12719 Cnd3: Nuclear condens 37.1 1E+02 0.0023 31.4 7.0 58 229-288 75-141 (298)
61 KOG1967 DNA repair/transcripti 34.9 2E+02 0.0043 34.7 9.4 115 202-332 902-1021(1030)
62 PTZ00429 beta-adaptin; Provisi 34.6 8.4E+02 0.018 28.9 15.4 164 125-308 47-228 (746)
63 KOG0166 Karyopherin (importin) 34.5 2.2E+02 0.0048 32.1 9.3 135 162-312 109-253 (514)
64 KOG0915 Uncharacterized conser 34.5 1.9E+02 0.0041 36.7 9.4 79 155-248 991-1069(1702)
65 PF10441 Urb2: Urb2/Npa2 famil 34.0 4.6E+02 0.0099 25.7 12.5 86 183-269 3-92 (223)
66 PF08167 RIX1: rRNA processing 33.2 3.8E+02 0.0083 25.0 9.6 79 232-311 39-124 (165)
67 KOG1248 Uncharacterized conser 33.1 2E+02 0.0042 35.5 9.1 111 124-251 780-902 (1176)
68 KOG0567 HEAT repeat-containing 32.8 79 0.0017 32.9 5.2 75 260-336 4-99 (289)
69 KOG1991 Nuclear transport rece 32.7 9E+02 0.019 29.6 14.2 135 163-307 407-551 (1010)
70 PF10521 DUF2454: Protein of u 31.8 3.9E+02 0.0085 27.2 10.2 87 192-287 101-203 (282)
71 PF12717 Cnd1: non-SMC mitotic 31.8 2.9E+02 0.0062 25.9 8.6 52 186-249 43-94 (178)
72 PF02291 TFIID-31kDa: Transcri 30.7 30 0.00065 31.9 1.7 49 2-68 58-107 (129)
73 PRK13800 putative oxidoreducta 30.4 6E+02 0.013 30.3 12.7 51 229-290 786-836 (897)
74 COG4996 Predicted phosphatase 27.8 28 0.0006 32.8 0.9 46 16-61 73-134 (164)
75 cd03571 ENTH_epsin ENTH domain 27.8 2.2E+02 0.0047 25.9 6.7 94 238-333 18-116 (123)
76 PF07524 Bromo_TP: Bromodomain 27.6 38 0.00082 27.7 1.6 22 2-23 52-73 (77)
77 PF01417 ENTH: ENTH domain; I 27.5 4.3E+02 0.0094 23.3 9.3 95 238-334 20-120 (125)
78 PF08064 UME: UME (NUC010) dom 26.9 1.9E+02 0.0041 25.3 6.0 73 261-339 13-87 (107)
79 cd05136 RasGAP_DAB2IP The DAB2 26.9 7.2E+02 0.016 26.0 11.2 133 131-270 14-164 (309)
80 PF10363 DUF2435: Protein of u 26.5 2.2E+02 0.0048 24.5 6.2 59 232-293 17-75 (92)
81 PF14500 MMS19_N: Dos2-interac 26.2 5.1E+02 0.011 26.4 9.8 119 142-272 11-136 (262)
82 KOG0213 Splicing factor 3b, su 25.4 3.1E+02 0.0066 32.8 8.6 99 229-338 487-585 (1172)
83 PF14500 MMS19_N: Dos2-interac 25.3 3.3E+02 0.0071 27.7 8.2 64 223-288 4-67 (262)
84 PF03542 Tuberin: Tuberin; In 24.8 7E+02 0.015 26.8 10.8 91 180-270 154-249 (356)
85 TIGR02568 LcrE type III secret 24.5 5.1E+02 0.011 25.9 9.3 46 124-173 45-91 (240)
86 KOG0211 Protein phosphatase 2A 24.4 3.4E+02 0.0073 32.2 9.0 143 155-304 430-604 (759)
87 COG0588 GpmA Phosphoglycerate 23.0 54 0.0012 33.1 2.0 51 237-287 38-98 (230)
88 KOG1243 Protein kinase [Genera 22.8 1.6E+02 0.0036 34.2 6.0 153 190-374 273-445 (690)
89 KOG0213 Splicing factor 3b, su 22.8 6.8E+02 0.015 30.1 10.7 151 180-340 648-833 (1172)
90 KOG0567 HEAT repeat-containing 21.3 1.1E+02 0.0025 31.7 3.9 72 261-333 156-247 (289)
91 PF08064 UME: UME (NUC010) dom 21.0 5.6E+02 0.012 22.3 8.8 72 169-251 14-87 (107)
92 PRK13800 putative oxidoreducta 21.0 5.2E+02 0.011 30.8 9.9 21 134-155 747-767 (897)
93 smart00147 RasGEF Guanine nucl 21.0 4E+02 0.0087 26.0 7.7 71 122-196 118-198 (242)
94 PF03810 IBN_N: Importin-beta 20.8 2.9E+02 0.0064 21.5 5.6 38 231-268 29-75 (77)
95 KOG1241 Karyopherin (importin) 20.5 1.5E+03 0.033 27.2 16.5 144 156-313 485-644 (859)
96 TIGR03233 DNA_S_dndB DNA sulfu 20.4 47 0.001 35.5 1.1 110 235-350 171-290 (355)
No 1
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.8e-106 Score=849.24 Aligned_cols=485 Identities=42% Similarity=0.628 Sum_probs=414.7
Q ss_pred CCCCCCCCCChhHHHHHHHhcCCCCCCCCCCCCCCceeEcCC-CCceeeecCccccHHHHhhccCCCCCCCCceEEEEEE
Q 011039 1 MRHSRRTTLTTDDVDEALKLRNVEPVYGFASGGPLRFRRAIG-YRDLFYLDDKDVEFKDVIEAPLPRAPLDTSIVCHWLA 79 (495)
Q Consensus 1 MrHsKR~kLTt~DIn~ALr~~nvEPLyGy~s~~pl~F~~a~g-~~~ly~~eDkEVDL~~ii~a~LPkvP~e~s~~aHWLA 79 (495)
|+||||++||++|||+||+++|+||+|||.++++++|+++.| ++++||.+|+||||++++++||||+|+++++++|||+
T Consensus 56 m~hskR~kLtv~DV~~ALr~~nVep~yg~~s~~~i~fr~a~~~~r~ly~~~d~EVD~d~~i~~plpkvP~d~~i~sHWL~ 135 (576)
T KOG2549|consen 56 MVHSKRTKLTVDDVDYALRSLNVEPLYGFGAQEIIPFRKASGGGRELYYPEDEEVDLDEIINAPLPKVPLDVSIKSHWLA 135 (576)
T ss_pred hhcCCCCcCcHHHHHHHHhhcccccccCcccCceeeccccCCCCceeecCchhhcchhhhhcCCCCCCCccceeeeeeee
Confidence 899999999999999999999999999999999999999954 4899999999999999999999999999999999999
Q ss_pred ecCccCCCCCCCccccc--------c-----C----CCC-----CCCCCCCCCCceeecCCccccCCHHHHHHHHHHHHH
Q 011039 80 IEGVQPVIPENAPVQAI--------A-----A----PSN-----GTNNEQKDGLPVEIKLPVKHILSRELQLYFDKITEL 137 (495)
Q Consensus 80 IeGVQP~IPeNp~~e~~--------~-----~----p~~-----~k~~~~~~~~~v~vKp~vkh~LSkElQlYf~kIt~a 137 (495)
||||||+|||||++... . + |.. .+.+..+.+.++++||+++|+||+|||+||++||++
T Consensus 136 iEGVQP~iPeNp~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~e~~~~Kp~~~h~LS~ElQlYy~~It~a 215 (576)
T KOG2549|consen 136 IEGVQPAIPENPPPLEKNVQKKEVIEPAIKAPEGNNPGASTKSSDAVKTLKIGEPVELKPSSKHVLSVELQLYYKEITEA 215 (576)
T ss_pred eccccccCCCCCCccccchhhhcccchhhhccCCCCCCccccccccccccccCCcccccccchhhccHHHHHHHHHHHHH
Confidence 99999999999975321 1 0 000 011112456789999999999999999999999999
Q ss_pred HccCCchHHHHHHHHhhhcCCCccccchhHHHHHHHhhhcC--CCCHHHHHHHHHHHHHHhcCCCcccchhhhhhHHHHH
Q 011039 138 AVSRSDSVLFKQALVSLATDSGLHPLVPYFTYFVADEVSRG--LNNYSLLFALMRVVWNLLQNPHIQIEPYLHQLMPSVV 215 (495)
Q Consensus 138 ll~~~d~~~r~~AL~sL~tDpGL~qLLPYfv~FI~e~V~~n--l~nl~~L~~llrmv~ALl~N~~L~IepYLHqLlPsvL 215 (495)
|++ ++++.|++||++|+||+|||||||||++||+|+|+.| ++|+..|+++|+|++||++||+||+|||||+||||||
T Consensus 216 ~~g-~~~~~r~eAL~sL~TDsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~lepYlh~L~PSvl 294 (576)
T KOG2549|consen 216 CTG-SDEPLRQEALQSLETDSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFLEPYLHQLVPSVL 294 (576)
T ss_pred Hhc-CCHHHHHHHHHhhccCccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccchhhHHHHHhhHHH
Confidence 998 5677899999999999999999999999999999999 8999999999999999999999999999999999999
Q ss_pred HHHhccccCCCC-CCcchHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCchhhhHHHHHHHhhCHHHHH
Q 011039 216 TCLVAKRLGNRL-ADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGPNVVR 294 (495)
Q Consensus 216 TCll~k~l~~~~-~~~hw~LRd~AA~lL~~I~~kf~~sy~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr 294 (495)
||+|+|++|.++ .||||+||||||++|+.||++|++.|.+|++||++||.|+|+|+++++++|||||+||++||.++||
T Consensus 295 TCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~lg~~~I~ 374 (576)
T KOG2549|consen 295 TCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGAIAGLSELGHEVIR 374 (576)
T ss_pred HhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHhhhhhhh
Confidence 999999999986 7999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccChHHHHHhhhHhHhhhhhhhhhhhhHHHHHHHHHHHHHHHhHhhhhccCCCCCCCCccchhcccC-cccc-cCcc
Q 011039 295 LLLLPNLGPYLSLLEPEMLLEKQKNEVKRHEAWRVYGALLQAAGQCIYDRLKIFPPLSSLPARSVWKTNG-IVAT-LSNK 372 (495)
Q Consensus 295 ~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~aLl~A~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~ 372 (495)
.+|+|+|..|+.+|++++..+..+|.+++.||++|+++|++++..|+++++...+.++.|-.+...++-| +++. ...|
T Consensus 375 ~~ilp~L~~~~~~l~~~l~~~~~~n~~~i~ea~~v~~~llk~~~~ii~~~l~~~~~~~~~~~r~~~~~~g~~l~~e~~~~ 454 (576)
T KOG2549|consen 375 TVILPNLKEYNERLQSVLDVESLSNQLDIYEANKVYGALLKAENPIIRDKLNSAPDNPVPALRRLRGSLGESLLSEVVKK 454 (576)
T ss_pred heeccchHHHHHHhhhhcccchhhhhhhhhhhhhHHHHHHHHhhHHHHhhhccccCCCCCcchhhcccccHHHHHHHHhh
Confidence 9999999999999999999998899999999999999999999999999999999999888999999888 6666 8899
Q ss_pred ccCCccccCC-CccccccccCCCccccCCCCCCCCCCCCCcCccCCCCCCCCCCCCCccC-------CCCCCCccccccC
Q 011039 373 RKTSMDLEEQ-PPLKKIATDGPVDAVSTSSMPTPMEEDATAATPLDNSDADHPSPSSVQI-------PPDSGSESRSKRD 444 (495)
Q Consensus 373 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 444 (495)
|+++-++..- -|.+.++ ++++ ++...+..++..+.+..+.-|.|++++.-. ..+++++. .+..
T Consensus 455 r~~~l~~~~~~~~~~~l~-~~p~-------~~~~~~~~~~~~v~~~~~~~g~p~~~t~p~~~~~~~~~~~~~~~~-~~~~ 525 (576)
T KOG2549|consen 455 RQAPLDSSSVTLPVQQLV-APPV-------MSSAQSLTSTQQVSSPTEAPGSPSTSTGPVTSEVPSVVTESTSGP-KVVG 525 (576)
T ss_pred ccCccccccccccccccc-CCcc-------ccccccccccceecCCCCCCCCCccCCCCcccCCCCcccccccCC-cccc
Confidence 9877333333 4555555 4441 111111111111111111112222221111 13344444 4455
Q ss_pred CCCchhhhHhhhhhhhhcccCCcCcchHhHHHHhhccccccCCCcccccCC
Q 011039 445 KGDSQAQKLSAILPQVWKDDLNSGKLLVSLFELFGEGILSFIPAPEMSLFL 495 (495)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (495)
.|-.++..+-+..++.|+++..++..+...-+..+.+..+|.++.+++.|.
T Consensus 526 ~~~~~vv~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~~~~~~q~~~~~ 576 (576)
T KOG2549|consen 526 PGKSRVVSLPSTGDGKGGATSHSRGVLPPASSPAPLSGSPACGSKQESVDS 576 (576)
T ss_pred CCCceeeecccccccccCCCCCCCCccccccCCCCCCccccccccccccCC
Confidence 557778888889999999999999999999999999999999999998763
No 2
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3.8e-94 Score=715.00 Aligned_cols=344 Identities=42% Similarity=0.667 Sum_probs=311.7
Q ss_pred CCCCCCCCCChhHHHHHHHhcCCCCCCCCCCCCCCceeEc--CCCCceeeecCccccHHHHhhccCCCCCCCCceEEEEE
Q 011039 1 MRHSRRTTLTTDDVDEALKLRNVEPVYGFASGGPLRFRRA--IGYRDLFYLDDKDVEFKDVIEAPLPRAPLDTSIVCHWL 78 (495)
Q Consensus 1 MrHsKR~kLTt~DIn~ALr~~nvEPLyGy~s~~pl~F~~a--~g~~~ly~~eDkEVDL~~ii~a~LPkvP~e~s~~aHWL 78 (495)
|+||||++||++||+.||+.+||||||||++.+|+.|..+ .+++.+||++|+||||+++||+||||+|+.++|++|||
T Consensus 50 mvhSKRtvLt~dDis~ALr~lNVePLyGyd~~r~l~fs~v~~g~gqsvYYlddEEvDfe~~in~PLPkVPr~~s~~sHWL 129 (450)
T COG5095 50 MVHSKRTVLTIDDISYALRSLNVEPLYGYDPSRPLQFSLVFRGLGQSVYYLDDEEVDFEEYINRPLPKVPRRVSIQSHWL 129 (450)
T ss_pred hhcccceeeeHHhHHHHHHhcCCCcccCCCCCcchhHHHHHccCCcceEecChhhcCHHHHhcCcCccCCcCcchhhhhh
Confidence 8999999999999999999999999999999999999988 45689999999999999999999999999999999999
Q ss_pred EecCccCCCCCCCccccccC---CCC---C------C-----CCCCCCCCceeecCCccccCCHHHHHHHHHHHHHHccC
Q 011039 79 AIEGVQPVIPENAPVQAIAA---PSN---G------T-----NNEQKDGLPVEIKLPVKHILSRELQLYFDKITELAVSR 141 (495)
Q Consensus 79 AIeGVQP~IPeNp~~e~~~~---p~~---~------k-----~~~~~~~~~v~vKp~vkh~LSkElQlYf~kIt~all~~ 141 (495)
|||||||+|||||.+-.... +++ + . +++-..++++++||.|||+||||+|+||++|+++++++
T Consensus 130 AiEGVQPaIpqNP~l~d~~V~~~~~k~T~g~~~~a~t~a~q~~n~v~~~~n~E~KplvkHvLsKELq~YF~kvisal~dE 209 (450)
T COG5095 130 AIEGVQPAIPQNPILLDKPVAKWASKDTLGVMPGASTAAYQARNGVTSMENAELKPLVKHVLSKELQMYFDKVISALLDE 209 (450)
T ss_pred hhcccCccCCCCCCccccccccccccCccccCcCcchHHHHHhcCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999996432210 011 0 0 00113456789999999999999999999999999988
Q ss_pred CchHHHHHHHHhhhcCCCccccchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcCCCcccchhhhhhHHHHHHHHhcc
Q 011039 142 SDSVLFKQALVSLATDSGLHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHIQIEPYLHQLMPSVVTCLVAK 221 (495)
Q Consensus 142 ~d~~~r~~AL~sL~tDpGL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~N~~L~IepYLHqLlPsvLTCll~k 221 (495)
++.+.|++||+||++|+|||||+|||++||+|+|++|++|+..|..+|.|+.||++|++||+|||+||||||+|||+++|
T Consensus 210 s~~~~r~aAl~sLr~dsGlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iFvdPY~hqlmPSilTcliak 289 (450)
T COG5095 210 SDEQTRDAALESLRNDSGLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIFVDPYLHQLMPSILTCLIAK 289 (450)
T ss_pred HHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCceeecHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCC-cchHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCchhhhHHHHHHHhhCHHHHHHhhccC
Q 011039 222 RLGNRLAD-NHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGPNVVRLLLLPN 300 (495)
Q Consensus 222 ~l~~~~~~-~hw~LRd~AA~lL~~I~~kf~~sy~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~lllP~ 300 (495)
++|+.|.+ +|++|||+||.+|..+|++|+++|.+|+|||+||++|+|+|.+++.+|||||+.||+.||.++||.+|.||
T Consensus 290 klg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k~~sT~YGalkgls~l~ke~ir~~i~pn 369 (450)
T COG5095 290 KLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREKTESTQYGALKGLSILSKEVIRTVIKPN 369 (450)
T ss_pred HhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcccccchhhhhhhhhhhhchhheeeeeccc
Confidence 99998754 79999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhhHhHhhhhhhhhhhhhHHHHHHHHHHHHHHHhHhhhhcc
Q 011039 301 LGPYLSLLEPEMLLEKQKNEVKRHEAWRVYGALLQAAGQCIYDRLKI 347 (495)
Q Consensus 301 L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~aLl~A~g~~~~~~~~~ 347 (495)
+..|...+...+. ..|+..-.|+.+|.++|..|+=..-.|-|.-
T Consensus 370 ~~~y~rlv~ktle---~~~e~~~~e~n~~vd~l~dalliL~~d~Lpn 413 (450)
T COG5095 370 ADYYVRLVNKTLE---KGNEEEIYENNRVVDLLKDALLILQSDGLPN 413 (450)
T ss_pred hHHHHHHHHHHHh---ccchhhcccchHHHHHHHHHHHHHhccCCCC
Confidence 9999888775443 2456667899999999999887766665544
No 3
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=100.00 E-value=1.5e-87 Score=690.51 Aligned_cols=292 Identities=55% Similarity=0.954 Sum_probs=270.7
Q ss_pred CCCCCCCCCChhHHHHHHHhcCCCCCCCCCCCCCCceeEc-CCCCceeeecCccccHHHHhhccCCCCCCCCceEEEEEE
Q 011039 1 MRHSRRTTLTTDDVDEALKLRNVEPVYGFASGGPLRFRRA-IGYRDLFYLDDKDVEFKDVIEAPLPRAPLDTSIVCHWLA 79 (495)
Q Consensus 1 MrHsKR~kLTt~DIn~ALr~~nvEPLyGy~s~~pl~F~~a-~g~~~ly~~eDkEVDL~~ii~a~LPkvP~e~s~~aHWLA 79 (495)
||||||++||++|||.||+++|+||+|||.++++++|+.. .|++++||++|+||||++++++++|++|+++++++||||
T Consensus 44 ~~hskR~~l~~~Di~~Al~~~n~eplyG~~~~~~~~~~~~~~~~~~l~~~~D~eidl~~~i~~~lp~~p~~~~~~~hWLa 123 (343)
T cd08050 44 MRHSKRRKLTTSDVNHALRLRNVEPLYGFSSSEPLPFRVSTGGGQELYYVEDKEIDLKDLINTPLPKVPLDVSVKAHWLA 123 (343)
T ss_pred HHHhCCCcCCHHHHHHHHHHhCCCcccCCCCCccccceeccCCCceEeeCCCCcccHHHhhhcccCCCCCccccccccce
Confidence 8999999999999999999999999999999999999555 467899999999999999999999999999999999999
Q ss_pred ecCccCCCCCCCccccccCCCC-----CCCCCCCCCCceeecCCccccCCHHHHHHHHHHHHHHccCCchHHHHHHHHhh
Q 011039 80 IEGVQPVIPENAPVQAIAAPSN-----GTNNEQKDGLPVEIKLPVKHILSRELQLYFDKITELAVSRSDSVLFKQALVSL 154 (495)
Q Consensus 80 IeGVQP~IPeNp~~e~~~~p~~-----~k~~~~~~~~~v~vKp~vkh~LSkElQlYf~kIt~all~~~d~~~r~~AL~sL 154 (495)
||||||.|||||++........ ..........++.+||.++|+||+|||+||++||++|++. ++..|++||++|
T Consensus 124 ieGvqP~ip~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~LS~Elq~yf~~It~a~~~~-~~~~r~~aL~sL 202 (343)
T cd08050 124 IEGVQPLIPENPPPSAIEVQKKESLANAAVKRLKKDEQVLLKPLVRHVLSKELQLYFEEITEALVGS-NEEKRREALQSL 202 (343)
T ss_pred ecCccCCCCCCCCchhccccccccccccccccccccCcceeeeccccccCHHHHHHHHHHHHHHhCC-CHHHHHHHHHHh
Confidence 9999999999998655432111 1111124456788999999999999999999999999984 566899999999
Q ss_pred hcCCCccccchhHHHHHHHhhhcCCC-CHHHHHHHHHHHHHHhcCCCcccchhhhhhHHHHHHHHhccccCCCC-CCcch
Q 011039 155 ATDSGLHPLVPYFTYFVADEVSRGLN-NYSLLFALMRVVWNLLQNPHIQIEPYLHQLMPSVVTCLVAKRLGNRL-ADNHW 232 (495)
Q Consensus 155 ~tDpGL~qLLPYfv~FI~e~V~~nl~-nl~~L~~llrmv~ALl~N~~L~IepYLHqLlPsvLTCll~k~l~~~~-~~~hw 232 (495)
++|||||||||||++||+++|++|++ |+..|.++|+|++||++||+|+||+|+|+|||++|||+|++++|.++ .++||
T Consensus 203 ~tD~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~ 282 (343)
T cd08050 203 RTDPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHW 282 (343)
T ss_pred ccCCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHH
Confidence 99999999999999999999999999 99999999999999999999999999999999999999999999987 79999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCchhhhHHHHHHHhhCHHHH
Q 011039 233 ELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGPNVV 293 (495)
Q Consensus 233 ~LRd~AA~lL~~I~~kf~~sy~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aV 293 (495)
+|||+||++|+.||++|+++|++|++||+++|+|+|+||++++++|||||+||++||+++|
T Consensus 283 ~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~lG~~~v 343 (343)
T cd08050 283 ALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSALGPEAV 343 (343)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHhCccCC
Confidence 9999999999999999999999999999999999999999999999999999999999875
No 4
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=99.96 E-value=6.1e-31 Score=224.47 Aligned_cols=91 Identities=62% Similarity=1.102 Sum_probs=88.4
Q ss_pred HHHHHhccccCCCCC-CcchHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCchhhhHHHHHHHhhCHHH
Q 011039 214 VVTCLVAKRLGNRLA-DNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGPNV 292 (495)
Q Consensus 214 vLTCll~k~l~~~~~-~~hw~LRd~AA~lL~~I~~kf~~sy~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~a 292 (495)
||||+|+|++|.++. +|||+|||+||++|+.||++|+++|++|++||+++|+++|+||++|+++|||||+||++||+++
T Consensus 1 vltClv~k~l~~~~~~~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~~~ 80 (92)
T PF07571_consen 1 VLTCLVGKQLGSRPPVDNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGPEA 80 (92)
T ss_pred CeEEEeeccccCCCCCcchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 589999999999885 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccChHHH
Q 011039 293 VRLLLLPNLGPY 304 (495)
Q Consensus 293 Vr~lllP~L~~y 304 (495)
||.+|+||++.|
T Consensus 81 vr~~ilP~l~~~ 92 (92)
T PF07571_consen 81 VRALILPNLKAY 92 (92)
T ss_pred HHHhhccCcCCC
Confidence 999999999876
No 5
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.04 E-value=0.0022 Score=55.69 Aligned_cols=77 Identities=22% Similarity=0.354 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHhcCCCcccchhhhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 011039 185 LFALMRVVWNLLQNPHIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTL 264 (495)
Q Consensus 185 L~~llrmv~ALl~N~~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~sy~~L~~RI~~tL 264 (495)
|+.+-.++.||-.. ++.|+-.|+|+||.|+ .|++|++|.+|.+.|..|++.+....-.--..|+..|
T Consensus 7 li~Laa~ai~l~~~----~~~~l~~Il~pVL~~~---------~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L 73 (97)
T PF12755_consen 7 LIGLAAVAIALGKD----ISKYLDEILPPVLKCF---------DDQDSRVRYYACEALYNISKVARGEILPYFNEIFDAL 73 (97)
T ss_pred HHHHHHHHHHchHh----HHHHHHHHHHHHHHHc---------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666 9999999999999996 5889999999999999999988765444457788888
Q ss_pred HHHhcCCCCC
Q 011039 265 LNALLDPKRA 274 (495)
Q Consensus 265 ~k~llDp~k~ 274 (495)
.|.+.|++.+
T Consensus 74 ~kl~~D~d~~ 83 (97)
T PF12755_consen 74 CKLSADPDEN 83 (97)
T ss_pred HHHHcCCchh
Confidence 9999988766
No 6
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.09 E-value=0.034 Score=53.52 Aligned_cols=180 Identities=17% Similarity=0.144 Sum_probs=99.0
Q ss_pred HHHHHHHHhhhcCCCcc---ccchhHHHHHH---HhhhcCCCCH--HHHHHHHHHHHHHhcCCCcccchhhhhhHHHHHH
Q 011039 145 VLFKQALVSLATDSGLH---PLVPYFTYFVA---DEVSRGLNNY--SLLFALMRVVWNLLQNPHIQIEPYLHQLMPSVVT 216 (495)
Q Consensus 145 ~~r~~AL~sL~tDpGL~---qLLPYfv~FI~---e~V~~nl~nl--~~L~~llrmv~ALl~N~~L~IepYLHqLlPsvLT 216 (495)
..|.+||..|+.--.-+ ...+-|+..+. ..+...+.|+ .+....+.++..|..+-.-.+++|+..++|+++.
T Consensus 22 ~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~ 101 (228)
T PF12348_consen 22 EERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLK 101 (228)
T ss_dssp HHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 45667776655432211 33344444443 4555556553 3334456666666666556699999999999998
Q ss_pred HHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCCcchHHHH-HHHHHHHhcCCCCCchhhhHHHHHHHhh----C--
Q 011039 217 CLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTRL-TKTLLNALLDPKRALTQHYGAVQGLAAL----G-- 289 (495)
Q Consensus 217 Cll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~sy~~L~~RI-~~tL~k~llDp~k~l~t~YGAI~GL~aL----G-- 289 (495)
++-.+ .=-+|+.|...|..||..++ ..+++ ...+...+. +++.....+++..|..+ |
T Consensus 102 ~~~~~---------~~~i~~~a~~~L~~i~~~~~-----~~~~~~~~~l~~~~~--~Kn~~vR~~~~~~l~~~l~~~~~~ 165 (228)
T PF12348_consen 102 KLGDS---------KKFIREAANNALDAIIESCS-----YSPKILLEILSQGLK--SKNPQVREECAEWLAIILEKWGSD 165 (228)
T ss_dssp GGG------------HHHHHHHHHHHHHHHTTS------H--HHHHHHHHHHTT---S-HHHHHHHHHHHHHHHTT----
T ss_pred HHccc---------cHHHHHHHHHHHHHHHHHCC-----cHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHHHHccch
Confidence 87432 12689999999999999766 23466 444444443 66677777666665543 3
Q ss_pred HHHHHHhhccChHHHHHhhhHhHhhhhhhhhhhhhHHHHHHHHHHHHHHHhHhhhh
Q 011039 290 PNVVRLLLLPNLGPYLSLLEPEMLLEKQKNEVKRHEAWRVYGALLQAAGQCIYDRL 345 (495)
Q Consensus 290 ~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~aLl~A~g~~~~~~~ 345 (495)
...+... ..++.+.+.|...+.+ .+..+|..|.+++..+....|..-..-+
T Consensus 166 ~~~l~~~--~~~~~l~~~l~~~l~D---~~~~VR~~Ar~~~~~l~~~~~~~a~~~~ 216 (228)
T PF12348_consen 166 SSVLQKS--AFLKQLVKALVKLLSD---ADPEVREAARECLWALYSHFPERAESIL 216 (228)
T ss_dssp -GGG--H--HHHHHHHHHHHHHHTS---S-HHHHHHHHHHHHHHHHHH-HHH----
T ss_pred Hhhhccc--chHHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHHHHCCHhhccch
Confidence 1111111 0124455555555543 4678899999999999887666544443
No 7
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=93.05 E-value=0.19 Score=34.38 Aligned_cols=30 Identities=30% Similarity=0.439 Sum_probs=24.7
Q ss_pred hHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHH
Q 011039 210 LMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKR 248 (495)
Q Consensus 210 LlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k 248 (495)
|+|.++.++ .|.+|.+|+.|+..|+.|++.
T Consensus 1 llp~l~~~l---------~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLL---------NDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHH---------T-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHc---------CCCCHHHHHHHHHHHHHHHhh
Confidence 578788776 378999999999999999874
No 8
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.72 E-value=1.4 Score=50.13 Aligned_cols=123 Identities=20% Similarity=0.313 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHhcCCCc--ccchhhhhhHHHHHHHHhcccc-----CCC--------------------------C----
Q 011039 185 LFALMRVVWNLLQNPHI--QIEPYLHQLMPSVVTCLVAKRL-----GNR--------------------------L---- 227 (495)
Q Consensus 185 L~~llrmv~ALl~N~~L--~IepYLHqLlPsvLTCll~k~l-----~~~--------------------------~---- 227 (495)
-.---.+-.|+..+|-. -+.|||.+|+|.++.-++-... .+. .
T Consensus 273 ALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~ 352 (885)
T KOG2023|consen 273 ALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADD 352 (885)
T ss_pred HHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccc
Confidence 33356677789999943 5789999999999987765321 100 0
Q ss_pred --CC----------cchHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCchhhhHHHHHHHhhCHHHHHH
Q 011039 228 --AD----------NHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGPNVVRL 295 (495)
Q Consensus 228 --~~----------~hw~LRd~AA~lL~~I~~kf~~sy~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~ 295 (495)
.+ ..|.||..+|..|.-+.+-|++ .+-+.++=.|...|.. ...-.+-.+|.+|.|+- |-.-.
T Consensus 353 eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~---elL~~l~PlLk~~L~~--~~W~vrEagvLAlGAIA-EGcM~ 426 (885)
T KOG2023|consen 353 EDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGD---ELLPILLPLLKEHLSS--EEWKVREAGVLALGAIA-EGCMQ 426 (885)
T ss_pred ccccccccccccccccccHhhccHHHHHHHHHhhHH---HHHHHHHHHHHHHcCc--chhhhhhhhHHHHHHHH-HHHhh
Confidence 01 2499999999999999999985 4666666667777663 34444455555555542 33445
Q ss_pred hhccChHHHHHhhhHhHh
Q 011039 296 LLLPNLGPYLSLLEPEML 313 (495)
Q Consensus 296 lllP~L~~y~~~Le~~l~ 313 (495)
.++|+|+.+...+-+-|.
T Consensus 427 g~~p~LpeLip~l~~~L~ 444 (885)
T KOG2023|consen 427 GFVPHLPELIPFLLSLLD 444 (885)
T ss_pred hcccchHHHHHHHHHHhc
Confidence 568888877766554443
No 9
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=90.65 E-value=7 Score=41.82 Aligned_cols=180 Identities=17% Similarity=0.181 Sum_probs=108.3
Q ss_pred HHHHhhhcCCC-ccccchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcCC-----Ccccchhhhh-hHHHHHHHHhcc
Q 011039 149 QALVSLATDSG-LHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNP-----HIQIEPYLHQ-LMPSVVTCLVAK 221 (495)
Q Consensus 149 ~AL~sL~tDpG-L~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~N~-----~L~IepYLHq-LlPsvLTCll~k 221 (495)
+||..+.+++. +..++|+++.-+.......- +......+++.+..++.+. +...+-|.|. ++|.++..++..
T Consensus 24 ~~l~~ls~~~~i~~~~~~~ll~kl~~~~~~~~-~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~ 102 (415)
T PF12460_consen 24 EALAALSTSPQILETLSIRLLNKLSIVCQSES-SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQA 102 (415)
T ss_pred HHHHHHHCChhHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhh
Confidence 46666777666 45566666655554443222 5555555555555555443 5667889987 888888887776
Q ss_pred ccCCCCCCcchHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhc----------CCCCCchhhhHHHHHHHhhCHH
Q 011039 222 RLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALL----------DPKRALTQHYGAVQGLAALGPN 291 (495)
Q Consensus 222 ~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~sy~~L~~RI~~tL~k~ll----------Dp~k~l~t~YGAI~GL~aLG~~ 291 (495)
..+... .++.+=+.+++++..|++..+ ..-|..+.+.+.+.|+ +...........+.-+.++=.-
T Consensus 103 ~~~~~~--~~~~~L~~~~~l~~~iv~~l~---~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~ 177 (415)
T PF12460_consen 103 SDQSSD--LDDRVLELLSRLINLIVRSLS---PEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCS 177 (415)
T ss_pred cccccc--cchHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHc
Confidence 543321 567888999999999999987 4577888888888887 1110001111222212221111
Q ss_pred HHHHhhccChHHHHHhhhHhHhhhhhhhhhhhhHHHHHHHHHHHH
Q 011039 292 VVRLLLLPNLGPYLSLLEPEMLLEKQKNEVKRHEAWRVYGALLQA 336 (495)
Q Consensus 292 aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~aLl~A 336 (495)
.=+.+.+|....+...+-..... ..+...|.-+.++..+|++=
T Consensus 178 l~~~~~~~~~~~ll~~l~~~~~~--~~~~~~~~~~~~~la~LvNK 220 (415)
T PF12460_consen 178 LRKDVSLPDLEELLQSLLNLALS--SEDEFSRLAALQLLASLVNK 220 (415)
T ss_pred CCcccCccCHHHHHHHHHHHHHc--CCChHHHHHHHHHHHHHHcC
Confidence 22445567777777665544332 22366778888888888874
No 10
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=90.30 E-value=0.14 Score=38.78 Aligned_cols=55 Identities=16% Similarity=0.148 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCchhhhHHHHHHHhh
Q 011039 232 WELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAAL 288 (495)
Q Consensus 232 w~LRd~AA~lL~~I~~kf~~sy~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aL 288 (495)
|.+|.-|+..|+.++...........+.++..|...|.|++. ...-.|..+|..|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~--~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDD--SVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSH--HHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCH--HHHHHHHHHHhcC
Confidence 899999999999987666666667888999999999987665 6688888888754
No 11
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=89.53 E-value=9.5 Score=42.97 Aligned_cols=166 Identities=19% Similarity=0.173 Sum_probs=115.4
Q ss_pred cCCCccccchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcCCCcccchhhhhhHHHHHHHHhccccCCCCCCcchHHH
Q 011039 156 TDSGLHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELR 235 (495)
Q Consensus 156 tDpGL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~N~~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LR 235 (495)
+.-|+.-++|-++.=+-+. .+..-...++.+.+|..=-...++.++..++|.+...+ .|-|=.+|
T Consensus 248 ~~~aVK~llpsll~~l~~~------kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl---------~DT~~evr 312 (569)
T KOG1242|consen 248 SAYAVKLLLPSLLGSLLEA------KWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVL---------WDTKPEVR 312 (569)
T ss_pred CcchhhHhhhhhHHHHHHH------hhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHH---------ccCCHHHH
Confidence 4455666676666555443 34455557777778888788888999999998554443 25677999
Q ss_pred HHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCC-------------------------------------Cchhh
Q 011039 236 DFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKR-------------------------------------ALTQH 278 (495)
Q Consensus 236 d~AA~lL~~I~~kf~~sy~~L~~RI~~tL~k~llDp~k-------------------------------------~l~t~ 278 (495)
.-+-..|-.+|..-.+. .-.++..+|+.++.||.+ +-.++
T Consensus 313 ~a~~~~l~~~~svidN~---dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~k 389 (569)
T KOG1242|consen 313 KAGIETLLKFGSVIDNP---DIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIK 389 (569)
T ss_pred HHHHHHHHHHHHhhccH---HHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhh
Confidence 99999999999887753 366788999999999983 12233
Q ss_pred hHHHHHHHhhCHHH-HHHhhccChHHHHHhhhHhHhhhhhhhhhhhhHHHHHHHHHHHHHHHhHh
Q 011039 279 YGAVQGLAALGPNV-VRLLLLPNLGPYLSLLEPEMLLEKQKNEVKRHEAWRVYGALLQAAGQCIY 342 (495)
Q Consensus 279 YGAI~GL~aLG~~a-Vr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~aLl~A~g~~~~ 342 (495)
=+++.-.-.|-..+ =...+-|.|+.+...|+..+.+. ...+|..|.|.+|++++.+|.--.
T Consensus 390 r~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~---~PEvR~vaarAL~~l~e~~g~~~f 451 (569)
T KOG1242|consen 390 RKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDA---VPEVRAVAARALGALLERLGEVSF 451 (569)
T ss_pred hhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCC---ChhHHHHHHHHHHHHHHHHHhhcc
Confidence 33333333333333 24456788888887777666432 467899999999999999887654
No 12
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.36 E-value=6.3 Score=47.19 Aligned_cols=256 Identities=14% Similarity=0.164 Sum_probs=145.4
Q ss_pred HHHHHHHHHHHccCCchHHHHHHHHhhhcCCCccccchhHHHHHHHhhhcCCCCHHH--HHHHHHHHHHHhcCCCcccch
Q 011039 128 QLYFDKITELAVSRSDSVLFKQALVSLATDSGLHPLVPYFTYFVADEVSRGLNNYSL--LFALMRVVWNLLQNPHIQIEP 205 (495)
Q Consensus 128 QlYf~kIt~all~~~d~~~r~~AL~sL~tDpGL~qLLPYfv~FI~e~V~~nl~nl~~--L~~llrmv~ALl~N~~L~Iep 205 (495)
|..|..+...+...++ ..|++|=+.|++..+=++++|-|.+..+..=....+.+.. +++++--. =+.|. .-
T Consensus 3 ~~~l~qLl~~l~spDn-~vr~~Ae~~l~~~~~~~~~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~-----w~~l~-~e 75 (1075)
T KOG2171|consen 3 SAPLEQLLQQLLSPDN-EVRRQAEEALETLAKTEPLLPALAHILATSADPQVRQLAAVLLRKLLTKH-----WSRLS-AE 75 (1075)
T ss_pred hhHHHHHHHHhcCCCc-hHHHHHHHHHHHhhcccchHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-----hhcCC-HH
Confidence 3456666666776554 4688888888888888889998877654422211122211 11111111 11111 12
Q ss_pred hhhhhHHHHHHHHhcc-------ccCC-------CCCC----------------cchHHHHHHHHHHHHHHHHhCCCCcc
Q 011039 206 YLHQLMPSVVTCLVAK-------RLGN-------RLAD----------------NHWELRDFTAKLVAAICKRYGHVYNT 255 (495)
Q Consensus 206 YLHqLlPsvLTCll~k-------~l~~-------~~~~----------------~hw~LRd~AA~lL~~I~~kf~~sy~~ 255 (495)
--.+|-.++|.|++.. ++|. ...+ .+-.+|+-|=.+|..+-..|++....
T Consensus 76 ~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~ 155 (1075)
T KOG2171|consen 76 VQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQP 155 (1075)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccch
Confidence 2346777788887662 2221 0111 23479999999999999999988776
Q ss_pred hHHHHHHHHHHHhcCCCCCchhhhHHHHHHHhhCH-----HHHHHhhccChHHHHHhhhHhHhhhhhhhhhhhhHHHHHH
Q 011039 256 LQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGP-----NVVRLLLLPNLGPYLSLLEPEMLLEKQKNEVKRHEAWRVY 330 (495)
Q Consensus 256 L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~-----~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~ 330 (495)
.-.-+.+.|.+.+.||..+ .+.-|+.++.++-. .+.+...-+-|+.....+....... +...-.++..+.
T Consensus 156 ~~~~l~~lf~q~~~d~s~~--vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~---d~~~a~~~l~~l 230 (1075)
T KOG2171|consen 156 HLDDLLRLFSQTMTDPSSP--VRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDG---DDDAAKSALEAL 230 (1075)
T ss_pred hHHHHHHHHHHhccCCcch--HHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhcc---chHHHHHHHHHH
Confidence 6678999999999999988 55666666666532 2333333444555554444443322 122224566666
Q ss_pred HHHHHHHHHhHhhhhccCCCC-----CCCCccchhcccCc--ccc----cCccccCCccccCC--CccccccccCCCc
Q 011039 331 GALLQAAGQCIYDRLKIFPPL-----SSLPARSVWKTNGI--VAT----LSNKRKTSMDLEEQ--PPLKKIATDGPVD 395 (495)
Q Consensus 331 ~aLl~A~g~~~~~~~~~~~~~-----~~~~~~~~~~~~~~--~~~----~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 395 (495)
.=|+...+.++.+.+.-.-.+ ..-..---||...- +++ -|.++|.+.+-.-+ |.+=++.||+..+
T Consensus 231 ~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D 308 (1075)
T KOG2171|consen 231 IELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDD 308 (1075)
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccc
Confidence 666666666666655432111 00001111221110 111 56777887774444 6777888888654
No 13
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.91 E-value=5.8 Score=44.66 Aligned_cols=148 Identities=18% Similarity=0.284 Sum_probs=99.6
Q ss_pred HHHHHHHHccCCchHHHHHHHHhhhcCCCccccchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcCCCcccchhhhhh
Q 011039 131 FDKITELAVSRSDSVLFKQALVSLATDSGLHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHIQIEPYLHQL 210 (495)
Q Consensus 131 f~kIt~all~~~d~~~r~~AL~sL~tDpGL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~N~~L~IepYLHqL 210 (495)
.++++.-++..++....++.++.|.+| |+.. -..|.+. .-|+-+.-++.||-.+. .+|+.++
T Consensus 24 lEk~Vk~l~~~~~~~~i~k~I~~L~~d------------~a~s-~~~n~rk-GgLiGlAA~~iaLg~~~----~~Y~~~i 85 (675)
T KOG0212|consen 24 LEKLVKDLVNNNDYDQIRKVISELAGD------------YAYS-PHANMRK-GGLIGLAAVAIALGIKD----AGYLEKI 85 (675)
T ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHH------------hccC-ccccccc-chHHHHHHHHHHhcccc----HHHHHHh
Confidence 445555566555555555666666654 1111 1223222 55666666666765443 4499999
Q ss_pred HHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCchhhhHHHHHHHhhCH
Q 011039 211 MPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGP 290 (495)
Q Consensus 211 lPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~sy~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~ 290 (495)
+|+|++|. .|..-.+|.||..-|-.|++-+......--.-|...+.|...|.+.+ +.|-++|..
T Consensus 86 v~Pv~~cf---------~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~-------V~~~aeLLd 149 (675)
T KOG0212|consen 86 VPPVLNCF---------SDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQN-------VRGGAELLD 149 (675)
T ss_pred hHHHHHhc---------cCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccc-------cccHHHHHH
Confidence 99999996 24445899999999999999999988889999999999999987754 345566777
Q ss_pred HHHHHhhccCh-----HHHHHhhhHhH
Q 011039 291 NVVRLLLLPNL-----GPYLSLLEPEM 312 (495)
Q Consensus 291 ~aVr~lllP~L-----~~y~~~Le~~l 312 (495)
.-+...+.+.- +.+...|...+
T Consensus 150 RLikdIVte~~~tFsL~~~ipLL~eri 176 (675)
T KOG0212|consen 150 RLIKDIVTESASTFSLPEFIPLLRERI 176 (675)
T ss_pred HHHHHhccccccccCHHHHHHHHHHHH
Confidence 77766666543 44444444443
No 14
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=87.60 E-value=6.7 Score=46.53 Aligned_cols=136 Identities=19% Similarity=0.256 Sum_probs=90.0
Q ss_pred ccccchhHHHHHHHhhhcCCCC-----HHHHHHHHHHHHHHhcCCCcccchhhhhhHHHHHHHHhccccCCCCCCcchHH
Q 011039 160 LHPLVPYFTYFVADEVSRGLNN-----YSLLFALMRVVWNLLQNPHIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWEL 234 (495)
Q Consensus 160 L~qLLPYfv~FI~e~V~~nl~n-----l~~L~~llrmv~ALl~N~~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~L 234 (495)
+|+++|-++.-+.-.|..+.-. +-.+..+.++++-|-.|-.+.-.||+|.++-+.+.-+-++ +..-++
T Consensus 514 fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~-------d~DqeV 586 (1233)
T KOG1824|consen 514 FHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKAT-------DSDQEV 586 (1233)
T ss_pred cccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcc-------cccHHH
Confidence 5666666665555555544322 4445557888888888888999999997666555444332 556799
Q ss_pred HHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCchhhhHHHHHHHhhCHHHHHHhhccChHHHHH
Q 011039 235 RDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGPNVVRLLLLPNLGPYLS 306 (495)
Q Consensus 235 Rd~AA~lL~~I~~kf~~sy~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~ 306 (495)
|+.|-.++++++-.|+....+=-+|+.-.|.+.+- .-.|.--|+.+|.-+---..+.-+.|++..++.
T Consensus 587 keraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~----nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~ 654 (1233)
T KOG1824|consen 587 KERAISCMGQIIANFGDFLGNELPRTLPILLERLG----NEITRLTAVKALTLIAMSPLDIDLSPVLTEILP 654 (1233)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHh----chhHHHHHHHHHHHHHhccceeehhhhHHHHHH
Confidence 99999999999999997666666777777776665 445566677766655333334334444444443
No 15
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=83.44 E-value=5.3 Score=33.26 Aligned_cols=94 Identities=13% Similarity=0.067 Sum_probs=60.8
Q ss_pred cchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcCCCcccchhhh-hhHHHHHHHHhccccCCCCCCcchHHHHHHHHH
Q 011039 163 LVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHIQIEPYLH-QLMPSVVTCLVAKRLGNRLADNHWELRDFTAKL 241 (495)
Q Consensus 163 LLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~N~~L~IepYLH-qLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~l 241 (495)
++|+++.++.+. +.......+..+..+..+..-....++. ..+|.++.++- +++..+|..|+.+
T Consensus 8 ~i~~l~~~l~~~------~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~---------~~~~~v~~~a~~~ 72 (120)
T cd00020 8 GLPALVSLLSSS------DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK---------SEDEEVVKAALWA 72 (120)
T ss_pred ChHHHHHHHHcC------CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHh---------CCCHHHHHHHHHH
Confidence 677777777543 3566666777788888874444444444 88888888862 2456999999999
Q ss_pred HHHHHHHhCCCCcc-hHHHHHHHHHHHhcCC
Q 011039 242 VAAICKRYGHVYNT-LQTRLTKTLLNALLDP 271 (495)
Q Consensus 242 L~~I~~kf~~sy~~-L~~RI~~tL~k~llDp 271 (495)
|..|+......-.- .+.-++..+.+.+.++
T Consensus 73 L~~l~~~~~~~~~~~~~~g~l~~l~~~l~~~ 103 (120)
T cd00020 73 LRNLAAGPEDNKLIVLEAGGVPKLVNLLDSS 103 (120)
T ss_pred HHHHccCcHHHHHHHHHCCChHHHHHHHhcC
Confidence 99998754321111 1222566667766654
No 16
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=83.12 E-value=11 Score=40.43 Aligned_cols=119 Identities=19% Similarity=0.276 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHhcC----CCcccchhhhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhC-CCCcchH
Q 011039 183 SLLFALMRVVWNLLQN----PHIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYG-HVYNTLQ 257 (495)
Q Consensus 183 ~~L~~llrmv~ALl~N----~~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~-~sy~~L~ 257 (495)
..+..++.++.-|+.. +.=.+.--+..++|+||-|++-- +++-..|..|-.++..|.+.+. .+....+
T Consensus 226 p~l~~vL~fl~~Ll~~~~~~~~~~~~~~~~~~lp~lL~c~~~v-------~e~~~~k~~a~e~l~~mv~~~~~~~~~~~~ 298 (373)
T PF14911_consen 226 PRLASVLAFLQQLLKRLQRQNENQILTLLRLVLPSLLECLMLV-------NEEPQVKKLATELLQYMVESCQVGSSGEPR 298 (373)
T ss_pred CcHHHHHHHHHHHHHhcCcccchhHHHHHHHhhHHHHHHHhhc-------CCCcchhHHHHHHHHHHHHcccccCcchHH
Confidence 3455566666666666 44455556678899999999752 3466889999999999998877 5556666
Q ss_pred HHHHHHHHHHhcCCC-CCchhhhHHHHHHHhhCHHHHHHhhccChHHHHHhhh
Q 011039 258 TRLTKTLLNALLDPK-RALTQHYGAVQGLAALGPNVVRLLLLPNLGPYLSLLE 309 (495)
Q Consensus 258 ~RI~~tL~k~llDp~-k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le 309 (495)
..++..+.....+-- ..-...|+-+.-++.+-++.|..+ +|.++.-...-|
T Consensus 299 ~~l~s~lrsfvqk~l~~~t~~~f~~l~~vA~l~p~lV~~L-ip~i~q~l~~~E 350 (373)
T PF14911_consen 299 EQLTSVLRSFVQKYLAHYTYQYFQFLEKVAELDPQLVISL-IPTIRQSLKDSE 350 (373)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhCHHHHHHH-HHHHHHHHHHHH
Confidence 666655554443211 122345788889999999999886 777776654433
No 17
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=82.90 E-value=39 Score=38.29 Aligned_cols=152 Identities=15% Similarity=0.130 Sum_probs=98.2
Q ss_pred HHHHHHHHHHccCCch-HHHH--HHHHhhhcCCCccccchhHHHHHHHhhhc--CCCCHHHHHHHHHHHHHHhcCCCccc
Q 011039 129 LYFDKITELAVSRSDS-VLFK--QALVSLATDSGLHPLVPYFTYFVADEVSR--GLNNYSLLFALMRVVWNLLQNPHIQI 203 (495)
Q Consensus 129 lYf~kIt~all~~~d~-~~r~--~AL~sL~tDpGL~qLLPYfv~FI~e~V~~--nl~nl~~L~~llrmv~ALl~N~~L~I 203 (495)
.+|.+.+.-+++..+- .++. -++..+-++.++..+-|+- ||..-.+. +.++...-...+-...++..|=+-.-
T Consensus 133 ~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~--~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~ 210 (569)
T KOG1242|consen 133 EYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFG--FLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPF 210 (569)
T ss_pred HHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhh--HHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCC
Confidence 3566655556653222 2222 3678999999999999985 33222211 22222111145666778888888899
Q ss_pred chhhhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCchhhhHHHH
Q 011039 204 EPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQ 283 (495)
Q Consensus 204 epYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~sy~~L~~RI~~tL~k~llDp~k~l~t~YGAI~ 283 (495)
|||+-.++|.|++|.=. ..=.+|+-|......|.+.+.. ..++-.+...+...+.+ .+.+.=+++-
T Consensus 211 EPyiv~~lp~il~~~~d---------~~~~Vr~Aa~~a~kai~~~~~~--~aVK~llpsll~~l~~~---kWrtK~asle 276 (569)
T KOG1242|consen 211 EPYIVPILPSILTNFGD---------KINKVREAAVEAAKAIMRCLSA--YAVKLLLPSLLGSLLEA---KWRTKMASLE 276 (569)
T ss_pred CchHHhhHHHHHHHhhc---------cchhhhHHHHHHHHHHHHhcCc--chhhHhhhhhHHHHHHH---hhhhHHHHHH
Confidence 99999999999999722 2237899999999999888765 34555554444444432 6777788888
Q ss_pred HHHhhCH---HHHHHh
Q 011039 284 GLAALGP---NVVRLL 296 (495)
Q Consensus 284 GL~aLG~---~aVr~l 296 (495)
+|.+|+. ..+..+
T Consensus 277 llg~m~~~ap~qLs~~ 292 (569)
T KOG1242|consen 277 LLGAMADCAPKQLSLC 292 (569)
T ss_pred HHHHHHHhchHHHHHH
Confidence 8887754 444444
No 18
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=81.85 E-value=7.2 Score=32.42 Aligned_cols=68 Identities=13% Similarity=0.092 Sum_probs=45.8
Q ss_pred hHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCCcc-hHHHHHHHHHHHhcCCCCCchhhhHHHHHHHhh
Q 011039 210 LMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNT-LQTRLTKTLLNALLDPKRALTQHYGAVQGLAAL 288 (495)
Q Consensus 210 LlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~sy~~-L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aL 288 (495)
++|.++.++- +.+|.+|..|...|+.+|......... ++..++..+.+.+.|+ .......|+..|..|
T Consensus 8 ~i~~l~~~l~---------~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~--~~~v~~~a~~~L~~l 76 (120)
T cd00020 8 GLPALVSLLS---------SSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE--DEEVVKAALWALRNL 76 (120)
T ss_pred ChHHHHHHHH---------cCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC--CHHHHHHHHHHHHHH
Confidence 5666666651 345999999999999999764332333 3337788888888764 345555666666666
No 19
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=79.12 E-value=43 Score=36.58 Aligned_cols=135 Identities=16% Similarity=0.222 Sum_probs=87.7
Q ss_pred CCHHHHHHHHHHHHHHccCCchHHHHHHHHhhhcCCC-----ccccchhHHHHHHHhhh-----------------cCC-
Q 011039 123 LSRELQLYFDKITELAVSRSDSVLFKQALVSLATDSG-----LHPLVPYFTYFVADEVS-----------------RGL- 179 (495)
Q Consensus 123 LSkElQlYf~kIt~all~~~d~~~r~~AL~sL~tDpG-----L~qLLPYfv~FI~e~V~-----------------~nl- 179 (495)
+.-+-..||+.|++.-.. +|-..+-+||..|..+-. ...+.|.+++|+..-.. .+.
T Consensus 64 ~~~~R~~fF~~I~~~~~~-~d~~~~l~aL~~LT~~Grdi~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~ 142 (464)
T PF11864_consen 64 SGLMRAEFFRDISDPSND-DDFDLRLEALIALTDNGRDIDFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLS 142 (464)
T ss_pred cHHHHHHHHHHHhcCCCc-hhHHHHHHHHHHHHcCCcCchhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccc
Confidence 557778899999665322 234567789999987643 67799999999977660 111
Q ss_pred ---CCHHHHHHHHHHHHHHhcCCCcccc-hhhhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCCcc
Q 011039 180 ---NNYSLLFALMRVVWNLLQNPHIQIE-PYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNT 255 (495)
Q Consensus 180 ---~nl~~L~~llrmv~ALl~N~~L~Ie-pYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~sy~~ 255 (495)
.+...+..+++++.-+++.++-+++ ..++.++-.+++++-.... .=.| +-+-+++..|+ +||.-=..
T Consensus 143 ~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~-------~~di-~~~L~vldaii-~y~~iP~~ 213 (464)
T PF11864_consen 143 NLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSS-------EDDI-EACLSVLDAII-TYGDIPSE 213 (464)
T ss_pred cccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCc-------HHHH-HHHHHHHHHHH-HcCcCChH
Confidence 1456688899999999999999888 8889888887777433211 1122 23334444443 36654344
Q ss_pred hHHHHHHHHHHH
Q 011039 256 LQTRLTKTLLNA 267 (495)
Q Consensus 256 L~~RI~~tL~k~ 267 (495)
=-+.++.+|.++
T Consensus 214 sl~~~i~vLCsi 225 (464)
T PF11864_consen 214 SLSPCIEVLCSI 225 (464)
T ss_pred HHHHHHHHHhhH
Confidence 444555555555
No 20
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=78.49 E-value=44 Score=36.94 Aligned_cols=159 Identities=12% Similarity=0.191 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHccCCchH---HHHHHHHhhhcCCCccccchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcCCCccc
Q 011039 127 LQLYFDKITELAVSRSDSV---LFKQALVSLATDSGLHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHIQI 203 (495)
Q Consensus 127 lQlYf~kIt~all~~~d~~---~r~~AL~sL~tDpGL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~N~~L~I 203 (495)
+..+.+.+.-.|+..++.+ .-.++|..+=.+-....+.|.+..|+..++.+. +-......++.+..++.++.-.+
T Consensus 35 l~~~~~~~lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~--~~~Vr~l~l~~l~~~~~~~~~~~ 112 (503)
T PF10508_consen 35 LERLPEPVLFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHP--SPKVRRLALKQLGRIARHSEGAA 112 (503)
T ss_pred HHhchHHHHHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCHHHH
Confidence 3444444444445433322 223457666666777788999999999999874 33333334555666666666555
Q ss_pred chhh-hhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCCcch-HHHHHHHHHHHhcCCC-CCchhhhH
Q 011039 204 EPYL-HQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTL-QTRLTKTLLNALLDPK-RALTQHYG 280 (495)
Q Consensus 204 epYL-HqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~sy~~L-~~RI~~tL~k~llDp~-k~l~t~YG 280 (495)
+.-. +.++|.|+.|+-. ..-.+-..|+++|..|++. ......+ .+.+...|.+.+..++ ......|-
T Consensus 113 ~~~~~~~l~~~i~~~L~~---------~d~~Va~~A~~~L~~l~~~-~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~e 182 (503)
T PF10508_consen 113 QLLVDNELLPLIIQCLRD---------PDLSVAKAAIKALKKLASH-PEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYE 182 (503)
T ss_pred HHhcCccHHHHHHHHHcC---------CcHHHHHHHHHHHHHHhCC-chhHHHHhCcchHHHHHHHHhccCHHHHHHHHH
Confidence 5444 6789999999833 3447899999999999863 2222222 2223555655554322 23456788
Q ss_pred HHHHHHhhCHHHHHHhh
Q 011039 281 AVQGLAALGPNVVRLLL 297 (495)
Q Consensus 281 AI~GL~aLG~~aVr~ll 297 (495)
.++-++...+++...+.
T Consensus 183 l~v~i~~~S~~~~~~~~ 199 (503)
T PF10508_consen 183 LLVEIASHSPEAAEAVV 199 (503)
T ss_pred HHHHHHhcCHHHHHHHH
Confidence 88888888888777664
No 21
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.94 E-value=13 Score=42.87 Aligned_cols=194 Identities=21% Similarity=0.252 Sum_probs=121.5
Q ss_pred HHHHhhhcCCCccccchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcCCCcccchhhhhhHHHHHHHHhccccCCCCC
Q 011039 149 QALVSLATDSGLHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHIQIEPYLHQLMPSVVTCLVAKRLGNRLA 228 (495)
Q Consensus 149 ~AL~sL~tDpGL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~N~~L~IepYLHqLlPsvLTCll~k~l~~~~~ 228 (495)
+||.-|++==| ++++|-+.-++-+...+ .++..-..-+-.+-|+..-=.=.+-|||..|+|-++.|+=.|.---| .
T Consensus 377 AaLDVLanvf~-~elL~~l~PlLk~~L~~--~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVR-s 452 (885)
T KOG2023|consen 377 AALDVLANVFG-DELLPILLPLLKEHLSS--EEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVR-S 452 (885)
T ss_pred HHHHHHHHhhH-HHHHHHHHHHHHHHcCc--chhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCcccee-e
Confidence 56655554322 57888888888777665 44544444444444555444446779999999999999977642222 2
Q ss_pred CcchHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCchhhhHHHHHHHhhCHHHHHHhhccChHHHHHhh
Q 011039 229 DNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGPNVVRLLLLPNLGPYLSLL 308 (495)
Q Consensus 229 ~~hw~LRd~AA~lL~~I~~kf~~sy~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~L 308 (495)
-..|.|-+||--++..= .+.-++| ++.-|++.++|.+| -.+-.|..+++.|-.+|-..+ +|+|..++..|
T Consensus 453 ITCWTLsRys~wv~~~~------~~~~f~p-vL~~ll~~llD~NK--~VQEAAcsAfAtleE~A~~eL-Vp~l~~IL~~l 522 (885)
T KOG2023|consen 453 ITCWTLSRYSKWVVQDS------RDEYFKP-VLEGLLRRLLDSNK--KVQEAACSAFATLEEEAGEEL-VPYLEYILDQL 522 (885)
T ss_pred eeeeeHhhhhhhHhcCC------hHhhhHH-HHHHHHHHHhcccH--HHHHHHHHHHHHHHHhccchh-HHHHHHHHHHH
Confidence 46899988887665433 1222333 45555666675554 456778888888888887775 89999999998
Q ss_pred hHhHhhhhhhhhhhhhHHHHHHHHHHHHHHHhHhhhhccCCCCCCCCccchhc
Q 011039 309 EPEMLLEKQKNEVKRHEAWRVYGALLQAAGQCIYDRLKIFPPLSSLPARSVWK 361 (495)
Q Consensus 309 e~~l~~~~~~~~~~r~ea~~v~~aLl~A~g~~~~~~~~~~~~~~~~~~~~~~~ 361 (495)
...+.....+|-..-++| .|.|-..||-.+.+.. +--...||.-.-|.
T Consensus 523 ~~af~kYQ~KNLlILYDA---IgtlAdsvg~~Ln~~~--YiqiLmPPLi~KW~ 570 (885)
T KOG2023|consen 523 VFAFGKYQKKNLLILYDA---IGTLADSVGHALNKPA--YIQILMPPLIEKWE 570 (885)
T ss_pred HHHHHHHhhcceehHHHH---HHHHHHHHHHhcCcHH--HHHHhccHHHHHHH
Confidence 888776654555443443 2344455555555433 11235677777774
No 22
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.92 E-value=38 Score=40.94 Aligned_cols=187 Identities=17% Similarity=0.143 Sum_probs=122.3
Q ss_pred HHHHHhhhcCCCccccchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcCCCcccchhhhhhHHHHHHHHhccccCCCC
Q 011039 148 KQALVSLATDSGLHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHIQIEPYLHQLMPSVVTCLVAKRLGNRL 227 (495)
Q Consensus 148 ~~AL~sL~tDpGL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~N~~L~IepYLHqLlPsvLTCll~k~l~~~~ 227 (495)
..||.-|+..=|=.+++|-+..++..-+++ .++..=...|..+-++..=-+=.++.-|.+++|.|+..+
T Consensus 330 ~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S--~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l--------- 398 (1075)
T KOG2171|consen 330 EQALDRLALHLGGKQVLPPLFEALEAMLQS--TEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGL--------- 398 (1075)
T ss_pred HHHHHHHHhcCChhhehHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhc---------
Confidence 358888888888888888888888776654 466666666777777777666566666666666665543
Q ss_pred CCcchHHHHHHHHHHHHHHHHhCCCCc-chHHHHHHHHHHHhcCCCCCchhhhHHHHHHHhhCHHHHHHhhccChHHHHH
Q 011039 228 ADNHWELRDFTAKLVAAICKRYGHVYN-TLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGPNVVRLLLLPNLGPYLS 306 (495)
Q Consensus 228 ~~~hw~LRd~AA~lL~~I~~kf~~sy~-~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~ 306 (495)
.|.|=.+|.-|-+.++++...|..... .=..|+.-.|...+ |.......+--|..+|..|--+.-...|-|+|+.+++
T Consensus 399 ~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~l-d~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~ 477 (1075)
T KOG2171|consen 399 NDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALL-DSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLME 477 (1075)
T ss_pred CCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHh-cccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 477889999999999988765542111 11122333333333 4444444445566777777778888888999999998
Q ss_pred hhhHhHhhhhhhhhhhhhHHHHHHHHHHHHHHHhHhhhhccCCCC
Q 011039 307 LLEPEMLLEKQKNEVKRHEAWRVYGALLQAAGQCIYDRLKIFPPL 351 (495)
Q Consensus 307 ~Le~~l~~~~~~~~~~r~ea~~v~~aLl~A~g~~~~~~~~~~~~~ 351 (495)
..-..+... ..+..-+.|..||=.++..+-...++-|.++
T Consensus 478 ~~l~~L~~~-----~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~ 517 (1075)
T KOG2171|consen 478 KKLLLLLQS-----SKPYVQEQAVTAIASVADAAQEKFIPYFDRL 517 (1075)
T ss_pred HHHHHHhcC-----CchhHHHHHHHHHHHHHHHHhhhhHhHHHHH
Confidence 433233221 2233346777888777777777777776554
No 23
>PRK09687 putative lyase; Provisional
Probab=75.46 E-value=10 Score=38.75 Aligned_cols=57 Identities=11% Similarity=0.175 Sum_probs=43.4
Q ss_pred CcchHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCchhhhHHHHHHHhhCHH
Q 011039 229 DNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGPN 291 (495)
Q Consensus 229 ~~hw~LRd~AA~lL~~I~~kf~~sy~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~ 291 (495)
+..|.+|..|+..|+++|.... .-.+++...+...+.|+ ....+++|+.+|..+|.+
T Consensus 102 D~d~~VR~~A~~aLG~~~~~~~----~~~~~a~~~l~~~~~D~--~~~VR~~a~~aLg~~~~~ 158 (280)
T PRK09687 102 DKSACVRASAINATGHRCKKNP----LYSPKIVEQSQITAFDK--STNVRFAVAFALSVINDE 158 (280)
T ss_pred CCCHHHHHHHHHHHhccccccc----ccchHHHHHHHHHhhCC--CHHHHHHHHHHHhccCCH
Confidence 5678999999999999875432 22567777788888876 557889999999888753
No 24
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=75.12 E-value=12 Score=40.94 Aligned_cols=142 Identities=20% Similarity=0.364 Sum_probs=84.2
Q ss_pred ccchhhhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCC----CcchHHHHHHHHHHHhcCCCCCchh
Q 011039 202 QIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHV----YNTLQTRLTKTLLNALLDPKRALTQ 277 (495)
Q Consensus 202 ~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~s----y~~L~~RI~~tL~k~llDp~k~l~t 277 (495)
.|.|++.+|+-.++..+-... + .+| ||--+++=+++..++.. ...+-++++..+..+--+|.+|..+
T Consensus 19 di~p~~~~ll~~Lf~~i~~~~--s--~EN-----eylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~Fn 89 (435)
T PF03378_consen 19 DIQPFAQQLLQNLFALIEKPG--S--AEN-----EYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFN 89 (435)
T ss_dssp GTTCCHHHHHHHHHHHHHTT---S--TC------HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHH
T ss_pred HhhhhHHHHHHHHHHHHhcCC--C--ccc-----hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchh
Confidence 577888888888888774421 1 344 34445555565555544 3567788888888888999999999
Q ss_pred hh-----HHHHHHHh-hCHH---HHHHhhccChHHHHHh-hhHhHhhhhhhhhhhhhHHHHHHHHHHHHHH--HhHhhhh
Q 011039 278 HY-----GAVQGLAA-LGPN---VVRLLLLPNLGPYLSL-LEPEMLLEKQKNEVKRHEAWRVYGALLQAAG--QCIYDRL 345 (495)
Q Consensus 278 ~Y-----GAI~GL~a-LG~~---aVr~lllP~L~~y~~~-Le~~l~~~~~~~~~~r~ea~~v~~aLl~A~g--~~~~~~~ 345 (495)
|| |+++-... -.++ .++..++|-+..++.. ++ +. --.+.++.+.|+..-. ..-..-.
T Consensus 90 HylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~-EF----------~PYvfQIla~Lle~~~~~~~p~~y~ 158 (435)
T PF03378_consen 90 HYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQ-EF----------IPYVFQILAQLLELRPSSPLPDAYK 158 (435)
T ss_dssp HHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-T-TT----------HHHHHHHHHHHHHHSS--S--TTTG
T ss_pred hhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHH-HH----------HHHHHHHHHHHHHcCCCCCCcHHHH
Confidence 99 55544422 2334 4566666666555421 11 11 2245778888887654 3334445
Q ss_pred ccCCCCCCCCccchhcccCcc
Q 011039 346 KIFPPLSSLPARSVWKTNGIV 366 (495)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~ 366 (495)
.+||.+.+| .+|...|++
T Consensus 159 ~L~~~Ll~p---~lWe~~gni 176 (435)
T PF03378_consen 159 QLFPPLLSP---ALWERRGNI 176 (435)
T ss_dssp GGHHHHTSG---GGGGSTTTH
T ss_pred HHHHHHcCc---chhccCCCc
Confidence 566666666 789988876
No 25
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=72.67 E-value=16 Score=35.47 Aligned_cols=138 Identities=22% Similarity=0.253 Sum_probs=81.9
Q ss_pred HHHHHHHHhcC-CCcccchhhhhhHHHH-----------HHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHh------
Q 011039 188 LMRVVWNLLQN-PHIQIEPYLHQLMPSV-----------VTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRY------ 249 (495)
Q Consensus 188 llrmv~ALl~N-~~L~IepYLHqLlPsv-----------LTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf------ 249 (495)
-+.++.+|+++ +.=.+-.|.+.|+|.. +||++. |..-..|--|+++++.+...-
T Consensus 6 Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~--------Dp~~kvR~aA~~~l~~lL~gsk~~L~~ 77 (182)
T PF13251_consen 6 ALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILK--------DPSPKVRAAAASALAALLEGSKPFLAQ 77 (182)
T ss_pred HHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHc--------CCchhHHHHHHHHHHHHHHccHHHHHH
Confidence 46677889988 7778889999999866 555543 445589999999999987641
Q ss_pred -------CCCCcchHHHHH-------HHHHHHhcCCCCCchhhhHHHHHHHhhCHHHH-HHhhccChHHHHHhhhHhHhh
Q 011039 250 -------GHVYNTLQTRLT-------KTLLNALLDPKRALTQHYGAVQGLAALGPNVV-RLLLLPNLGPYLSLLEPEMLL 314 (495)
Q Consensus 250 -------~~sy~~L~~RI~-------~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aV-r~lllP~L~~y~~~Le~~l~~ 314 (495)
..+|..+-.++. +.|..++..++ ...+.=-.+.+|..|-..+= ..+=-..+...+..+.+.+..
T Consensus 78 Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~-~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~ 156 (182)
T PF13251_consen 78 AEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEK-SPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRH 156 (182)
T ss_pred HHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhc
Confidence 124444444433 33444554433 33344455666665533211 111122334444444444432
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHH
Q 011039 315 EKQKNEVKRHEAWRVYGALLQAA 337 (495)
Q Consensus 315 ~~~~~~~~r~ea~~v~~aLl~A~ 337 (495)
.+..+|..+.-|+|+|+.+.
T Consensus 157 ---~d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 157 ---RDPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred ---CCCcHHHHHHHHHHHHHcCC
Confidence 45567888899999988753
No 26
>cd07979 TAF9 TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. The TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Human TAF9 has a paralogue gene (TAF9L) whi
Probab=71.71 E-value=3 Score=37.50 Aligned_cols=54 Identities=30% Similarity=0.474 Sum_probs=38.2
Q ss_pred CCCCCCCCChhHHHHHHHhcCCCCCCCCCCCCCCceeEcCCCCceeeecCccccHHHHhh-ccCCCCCCCCce
Q 011039 2 RHSRRTTLTTDDVDEALKLRNVEPVYGFASGGPLRFRRAIGYRDLFYLDDKDVEFKDVIE-APLPRAPLDTSI 73 (495)
Q Consensus 2 rHsKR~kLTt~DIn~ALr~~nvEPLyGy~s~~pl~F~~a~g~~~ly~~eDkEVDL~~ii~-a~LPkvP~e~s~ 73 (495)
+|++|++++.+||..|++.+.- |.|.+..+ .|.-+++..-.| .|||+++....+
T Consensus 47 ~hA~r~tV~~eDV~lAi~~r~~---~~f~~~p~---------------~~~l~~~a~~~N~~pLP~~~~~~g~ 101 (117)
T cd07979 47 EHAGKANIDADDVKLAIQSRVD---YSFTSPPP---------------RDFLLELAREKNSIPLPPIPPSCGL 101 (117)
T ss_pred HHcCCCCCCHHHHHHHHHHHhc---cCCCCCCc---------------HHHHHHHHHHhccCCCCCCCCCCCc
Confidence 6999999999999999999876 66664311 233345555455 489988876543
No 27
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=68.14 E-value=6.7 Score=36.44 Aligned_cols=78 Identities=15% Similarity=0.286 Sum_probs=52.5
Q ss_pred CCccccchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcCCCcccchhh--hhhHHHHHHHHhccccCCCCCCcchHHH
Q 011039 158 SGLHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHIQIEPYL--HQLMPSVVTCLVAKRLGNRLADNHWELR 235 (495)
Q Consensus 158 pGL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~N~~L~IepYL--HqLlPsvLTCll~k~l~~~~~~~hw~LR 235 (495)
-|+..|+-.+.++... -..+-.+.......++.++||+.|.. -++-.+ +..+..|..|+.+ .+...|
T Consensus 107 ~G~~~L~~~L~~~~~~-~~~~~~~~~~~~~~l~Clkal~n~~~-G~~~v~~~~~~v~~i~~~L~s---------~~~~~r 175 (187)
T PF06371_consen 107 GGLEALLNVLSKLNKK-KEKSEEDIDIEHECLRCLKALMNTKY-GLEAVLSHPDSVNLIALSLDS---------PNIKTR 175 (187)
T ss_dssp HHHHHHHHHHHHHHTH-HCTCTTCHHHHHHHHHHHHHHTSSHH-HHHHHHCSSSHHHHHHHT--T---------TSHHHH
T ss_pred CCHHHHHHHHHHhhhh-hhhcchhHHHHHHHHHHHHHHHccHH-HHHHHHcCcHHHHHHHHHHCC---------CCHHHH
Confidence 4666666666555433 22334667888889999999998874 334333 3556667777643 345899
Q ss_pred HHHHHHHHHHH
Q 011039 236 DFTAKLVAAIC 246 (495)
Q Consensus 236 d~AA~lL~~I~ 246 (495)
..|..+|+.||
T Consensus 176 ~~~leiL~~lc 186 (187)
T PF06371_consen 176 KLALEILAALC 186 (187)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999998
No 28
>smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins. subdomain of archael histone-like transcription factors
Probab=66.83 E-value=3.4 Score=34.21 Aligned_cols=24 Identities=25% Similarity=0.148 Sum_probs=21.5
Q ss_pred CCCCCCCCCChhHHHHHHHhcCCC
Q 011039 1 MRHSRRTTLTTDDVDEALKLRNVE 24 (495)
Q Consensus 1 MrHsKR~kLTt~DIn~ALr~~nvE 24 (495)
|.|++|+..+..||..||+-.++.
T Consensus 51 a~~agR~~~~~~Dv~~Al~~~gi~ 74 (77)
T smart00576 51 AELAGRTEPNLGDVVLALENLGIS 74 (77)
T ss_pred HHHcCCCCCCHHHHHHHHHHhCcc
Confidence 469999999999999999998873
No 29
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=66.16 E-value=62 Score=34.77 Aligned_cols=68 Identities=21% Similarity=0.192 Sum_probs=50.2
Q ss_pred hhhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCCcchHHH-HHHHHHHHhcCCCCCchhhhHHHHH
Q 011039 206 YLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTR-LTKTLLNALLDPKRALTQHYGAVQG 284 (495)
Q Consensus 206 YLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~sy~~L~~R-I~~tL~k~llDp~k~l~t~YGAI~G 284 (495)
-+..++|.|..|+. ++++.+|..|+-.+.+|++.+.+. -+. +...+.+.+.|++ ....+.|+..
T Consensus 111 ~~~~l~~~v~~ll~---------~~~~~VRk~A~~~l~~i~~~~p~~----~~~~~~~~l~~lL~d~~--~~V~~~a~~~ 175 (526)
T PF01602_consen 111 MAEPLIPDVIKLLS---------DPSPYVRKKAALALLKIYRKDPDL----VEDELIPKLKQLLSDKD--PSVVSAALSL 175 (526)
T ss_dssp HHHHHHHHHHHHHH---------SSSHHHHHHHHHHHHHHHHHCHCC----HHGGHHHHHHHHTTHSS--HHHHHHHHHH
T ss_pred hhhHHHHHHHHHhc---------CCchHHHHHHHHHHHHHhccCHHH----HHHHHHHHHhhhccCCc--chhHHHHHHH
Confidence 34556666666652 457899999999999999995544 333 6777777776544 7888889988
Q ss_pred HHhh
Q 011039 285 LAAL 288 (495)
Q Consensus 285 L~aL 288 (495)
+..+
T Consensus 176 l~~i 179 (526)
T PF01602_consen 176 LSEI 179 (526)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8888
No 30
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=64.50 E-value=83 Score=36.99 Aligned_cols=123 Identities=18% Similarity=0.214 Sum_probs=85.6
Q ss_pred ccchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcCCCc-ccchhhhhhHHHHHHHHhccccCCCCCCcchHHHHHHHH
Q 011039 162 PLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHI-QIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAK 240 (495)
Q Consensus 162 qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~N~~L-~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~ 240 (495)
-++|...-||-+.++. .|+..-..-.-..-+.+.=|.- .+.|+++|.+|+++..+..+. .-.||-+|-
T Consensus 360 ~Iv~~Vl~Fiee~i~~--pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~s---------l~VkdTaAw 428 (859)
T KOG1241|consen 360 DIVPHVLPFIEENIQN--PDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPS---------LWVKDTAAW 428 (859)
T ss_pred cchhhhHHHHHHhcCC--cchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCch---------hhhcchHHH
Confidence 4778888888887765 3444333333334466666655 899999999999998874332 245699999
Q ss_pred HHHHHHHHhCCC--CcchHHHHHHHHHHHhcCCCCCchhhhHHHHHHHhhCHHHHHH
Q 011039 241 LVAAICKRYGHV--YNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGPNVVRL 295 (495)
Q Consensus 241 lL~~I~~kf~~s--y~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~ 295 (495)
.+++||+-.... ...+-+-++..|..-|.|.-+--..-=+|+.||+.--.++.+.
T Consensus 429 tlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DePrva~N~CWAf~~Laea~~eA~~s 485 (859)
T KOG1241|consen 429 TLGRIADFLPEAIINQELLQSKLSALLEGLNDEPRVASNVCWAFISLAEAAYEAAVS 485 (859)
T ss_pred HHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHhccC
Confidence 999999875432 2345556677788888887777777789999998665555543
No 31
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=64.22 E-value=42 Score=26.78 Aligned_cols=51 Identities=18% Similarity=0.229 Sum_probs=40.1
Q ss_pred CcchHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCchhhhHHHHHHHhhCHH
Q 011039 229 DNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGPN 291 (495)
Q Consensus 229 ~~hw~LRd~AA~lL~~I~~kf~~sy~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~ 291 (495)
+..|.+|..|+.+|+.+. .+++...|.+.+.| .......=|+..|..+|.+
T Consensus 11 ~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d--~~~~vr~~a~~aL~~i~~~ 61 (88)
T PF13646_consen 11 DPDPQVRAEAARALGELG----------DPEAIPALIELLKD--EDPMVRRAAARALGRIGDP 61 (88)
T ss_dssp SSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTS--SSHHHHHHHHHHHHCCHHH
T ss_pred CCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcC--CCHHHHHHHHHHHHHhCCH
Confidence 567899999999999332 34778888888854 5567889999999999863
No 32
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=63.43 E-value=2e+02 Score=35.03 Aligned_cols=149 Identities=17% Similarity=0.279 Sum_probs=108.0
Q ss_pred CCHHHHHHHHHHHHHHhcCCCcccchhhhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCCcchHHH
Q 011039 180 NNYSLLFALMRVVWNLLQNPHIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTR 259 (495)
Q Consensus 180 ~nl~~L~~llrmv~ALl~N~~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~sy~~L~~R 259 (495)
.+...+...++++.++..--.-.+..|+..++|.+..-+ +....+|=+||++.-+.+....+++-....-.-+-
T Consensus 225 ~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~------~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pe 298 (1233)
T KOG1824|consen 225 TQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYC------NKIEEDDDELREYCLQALESFLRRCPKEILPHVPE 298 (1233)
T ss_pred CchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHh------cccccCcHHHHHHHHHHHHHHHHhChhhhcccchH
Confidence 357788889999999999999999999999999887653 43346677999999999999999998877777788
Q ss_pred HHHHHHHHhc-CCCCCchh-------------------------------hhHHHHHHHhhCHHHHHHhhccC---hHHH
Q 011039 260 LTKTLLNALL-DPKRALTQ-------------------------------HYGAVQGLAALGPNVVRLLLLPN---LGPY 304 (495)
Q Consensus 260 I~~tL~k~ll-Dp~k~l~t-------------------------------~YGAI~GL~aLG~~aVr~lllP~---L~~y 304 (495)
|++.|++.+. ||+-...+ +=-|..++.+ +|.-+ |+.+
T Consensus 299 i~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a--------~IsSR~E~L~~~ 370 (1233)
T KOG1824|consen 299 IINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEA--------VISSRLEMLPDF 370 (1233)
T ss_pred HHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHH--------HHhccHHHHHHH
Confidence 9999988884 87755443 2234444433 33333 2333
Q ss_pred HHhhhHhHhhh-hhhhhhhhhHHHHHHHHHHHHHHHhHh
Q 011039 305 LSLLEPEMLLE-KQKNEVKRHEAWRVYGALLQAAGQCIY 342 (495)
Q Consensus 305 ~~~Le~~l~~~-~~~~~~~r~ea~~v~~aLl~A~g~~~~ 342 (495)
+..+-|.+-.. +...+.++.+...+|-+|++-++.+..
T Consensus 371 ~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~ 409 (1233)
T KOG1824|consen 371 YQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIE 409 (1233)
T ss_pred HHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcc
Confidence 44444544432 345678899999999999987665543
No 33
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=60.68 E-value=46 Score=34.42 Aligned_cols=91 Identities=15% Similarity=0.211 Sum_probs=65.3
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHHhcCCCcccchh-hhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHH
Q 011039 170 FVADEVSRGLNNYSLLFALMRVVWNLLQNPHIQIEPY-LHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKR 248 (495)
Q Consensus 170 FI~e~V~~nl~nl~~L~~llrmv~ALl~N~~L~IepY-LHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k 248 (495)
|++++|...+.+-+.+..++|..++++.+-.-.+..- ...+--+++.|+++..+ .|..|..|.++|..++.+
T Consensus 164 ll~~kvyskl~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~-------~~~vR~~A~~~l~~l~~~ 236 (339)
T PF12074_consen 164 LLSEKVYSKLASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNV-------SWKVRRAALSALKKLYAS 236 (339)
T ss_pred hcCHHHHhccCCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCC-------CHHHHHHHHHHHHHHHHh
Confidence 4456666666677888889999999998755544322 24455578888876433 579999999999999988
Q ss_pred hCCCCcchHHHHHHHHHHHhcC
Q 011039 249 YGHVYNTLQTRLTKTLLNALLD 270 (495)
Q Consensus 249 f~~sy~~L~~RI~~tL~k~llD 270 (495)
.... +..-|+..+.+.+.+
T Consensus 237 ~~~~---l~~~li~~l~~~l~~ 255 (339)
T PF12074_consen 237 NPEL---LSKSLISGLWKWLSS 255 (339)
T ss_pred ChHH---HHHHHHHHHHHHHHh
Confidence 6654 666677777766653
No 34
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=60.36 E-value=99 Score=33.23 Aligned_cols=131 Identities=17% Similarity=0.211 Sum_probs=71.1
Q ss_pred CCchHHHHHHH---HhhhcCCCccccchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcCCCcccchhhhhhHHHHHHH
Q 011039 141 RSDSVLFKQAL---VSLATDSGLHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHIQIEPYLHQLMPSVVTC 217 (495)
Q Consensus 141 ~~d~~~r~~AL---~sL~tDpGL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~N~~L~IepYLHqLlPsvLTC 217 (495)
.+|...+..|| ..|.+...+..+++-|..|+.+ ..+...-..+++.+..+..--.-..+.|+..++. .
T Consensus 315 ~~d~~Ir~~~l~lL~~l~~~~n~~~Il~eL~~~l~~-----~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~----l 385 (526)
T PF01602_consen 315 DDDPSIRKKALDLLYKLANESNVKEILDELLKYLSE-----LSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLK----L 385 (526)
T ss_dssp SSSHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-----C--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHH----H
T ss_pred CCChhHHHHHHHHHhhcccccchhhHHHHHHHHHHh-----ccchhhhhhHHHHHHHHHhccCchHHHHHHHHHH----h
Confidence 34444554433 5666677777777777777732 1122222222222222221112233344443333 2
Q ss_pred HhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCchhhhHHHHHHHhhCHHHHH
Q 011039 218 LVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGPNVVR 294 (495)
Q Consensus 218 ll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~sy~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr 294 (495)
+-. ....+++.+...+..++.+ ++.++..++..+.+.+.+ .......-.+++.+++.|...-.
T Consensus 386 l~~---------~~~~~~~~~~~~i~~ll~~----~~~~~~~~l~~L~~~l~~-~~~~~~~~~~~wilGEy~~~~~~ 448 (526)
T PF01602_consen 386 LEI---------SGDYVSNEIINVIRDLLSN----NPELREKILKKLIELLED-ISSPEALAAAIWILGEYGELIEN 448 (526)
T ss_dssp HHC---------TGGGCHCHHHHHHHHHHHH----STTTHHHHHHHHHHHHTS-SSSHHHHHHHHHHHHHHCHHHTT
T ss_pred hhh---------ccccccchHHHHHHHHhhc----ChhhhHHHHHHHHHHHHH-hhHHHHHHHHHhhhcccCCcccc
Confidence 211 1124466677777777766 467788899999999877 33334577889999999887655
No 35
>PRK09687 putative lyase; Provisional
Probab=60.03 E-value=26 Score=35.80 Aligned_cols=64 Identities=19% Similarity=0.313 Sum_probs=43.7
Q ss_pred hhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCchhhhHHHHHHHhh
Q 011039 209 QLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAAL 288 (495)
Q Consensus 209 qLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~sy~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aL 288 (495)
.-++.++.++ .++.|.+|..|+.-|+.+ .+++ +.+...|.+.+.|+ .....-+|+.||..+
T Consensus 159 ~ai~~L~~~L---------~d~~~~VR~~A~~aLg~~--~~~~------~~~~~~L~~~L~D~--~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 159 AAIPLLINLL---------KDPNGDVRNWAAFALNSN--KYDN------PDIREAFVAMLQDK--NEEIRIEAIIGLALR 219 (280)
T ss_pred HHHHHHHHHh---------cCCCHHHHHHHHHHHhcC--CCCC------HHHHHHHHHHhcCC--ChHHHHHHHHHHHcc
Confidence 4556666655 256778999999999888 2222 35666777777655 445577888888888
Q ss_pred CHH
Q 011039 289 GPN 291 (495)
Q Consensus 289 G~~ 291 (495)
|..
T Consensus 220 ~~~ 222 (280)
T PRK09687 220 KDK 222 (280)
T ss_pred CCh
Confidence 764
No 36
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=56.05 E-value=2.8e+02 Score=29.50 Aligned_cols=197 Identities=14% Similarity=0.147 Sum_probs=121.0
Q ss_pred ccccCCHHHHH-HHHHHHHHHccCC-chHHHHHHHHhhhcCCCccccchhH--------HHHHHHhhhcCCCCHHHHHHH
Q 011039 119 VKHILSRELQL-YFDKITELAVSRS-DSVLFKQALVSLATDSGLHPLVPYF--------TYFVADEVSRGLNNYSLLFAL 188 (495)
Q Consensus 119 vkh~LSkElQl-Yf~kIt~all~~~-d~~~r~~AL~sL~tDpGL~qLLPYf--------v~FI~e~V~~nl~nl~~L~~l 188 (495)
.-..||.|... +++..++++...+ ++.....+|..|+. |.+=|++ +-.+-..++..++.......-
T Consensus 79 i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~----Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~er 154 (372)
T PF12231_consen 79 IVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSD----QKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISER 154 (372)
T ss_pred HHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----CCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHH
Confidence 33568888888 7888888876544 33455667777765 2222222 222223344335555666666
Q ss_pred HHHHHHHhcCCCcccchhhhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCC---------------
Q 011039 189 MRVVWNLLQNPHIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVY--------------- 253 (495)
Q Consensus 189 lrmv~ALl~N~~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~sy--------------- 253 (495)
+.+++-|+.+---.+-...+.-+|.++++++...- .+|..|..++..+...++..-
T Consensus 155 L~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k---------~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~ 225 (372)
T PF12231_consen 155 LNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAK---------DIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLE 225 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch---------HHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccc
Confidence 77777777766666666788899999999987411 567766666665554443210
Q ss_pred -cchHHHHHHHHHHHhcC--CCCCchhhhHHHHHHHhhCHHHHHHhhccChHHHHHhhhHhHhhhhhhhhhhhhHHHHHH
Q 011039 254 -NTLQTRLTKTLLNALLD--PKRALTQHYGAVQGLAALGPNVVRLLLLPNLGPYLSLLEPEMLLEKQKNEVKRHEAWRVY 330 (495)
Q Consensus 254 -~~L~~RI~~tL~k~llD--p~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~ 330 (495)
.++-.-+.+.+.+.+.+ ..+......+++++|. |...++. .+++..++...|..... .+...|.+|..+.
T Consensus 226 ~~~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL--~~~~~~~--w~~~n~wL~v~e~cFn~---~d~~~k~~A~~aW 298 (372)
T PF12231_consen 226 NGKLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLL--GSSRLDS--WEHLNEWLKVPEKCFNS---SDPQVKIQAFKAW 298 (372)
T ss_pred cccHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHh--CCchhhc--cHhHhHHHHHHHHHhcC---CCHHHHHHHHHHH
Confidence 02222334444555555 2233456789999887 5544333 68888888888877753 3566788888777
Q ss_pred HHHHH
Q 011039 331 GALLQ 335 (495)
Q Consensus 331 ~aLl~ 335 (495)
..|+-
T Consensus 299 ~~liy 303 (372)
T PF12231_consen 299 RRLIY 303 (372)
T ss_pred HHHHH
Confidence 77776
No 37
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=54.68 E-value=34 Score=36.53 Aligned_cols=143 Identities=15% Similarity=0.227 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHhcCCCc---c-cchhhhhhHHHHHHHHhccccCCCC-------------------CCcchHHHHHHHHH
Q 011039 185 LFALMRVVWNLLQNPHI---Q-IEPYLHQLMPSVVTCLVAKRLGNRL-------------------ADNHWELRDFTAKL 241 (495)
Q Consensus 185 L~~llrmv~ALl~N~~L---~-IepYLHqLlPsvLTCll~k~l~~~~-------------------~~~hw~LRd~AA~l 241 (495)
+...++...+....++. + -++.|.+|+-- +|-+.+|-+. ..|.-.-|.-|.++
T Consensus 159 v~~al~FL~~v~~~~~~~~lf~~~~~L~~Iie~----VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~df 234 (370)
T PF08506_consen 159 VSKALQFLSSVAESPHHKNLFENKPHLQQIIEK----VIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDF 234 (370)
T ss_dssp HHHHHHHHHHHHTSHHHHTTT-SHHHHHHHHHH----THHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHH
T ss_pred HHHHHHHHHHHHcchhHHHHhCCHHHHHHHHHH----hccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHH
Confidence 44467777777766542 2 24566655553 3333333221 12345677888899
Q ss_pred HHHHHHHhCCCCcchHH-HHHHHHHHHhcCCCCCchhhhHHHHHHHhhCHHH------HH--HhhccChHHHHHhhhHhH
Q 011039 242 VAAICKRYGHVYNTLQT-RLTKTLLNALLDPKRALTQHYGAVQGLAALGPNV------VR--LLLLPNLGPYLSLLEPEM 312 (495)
Q Consensus 242 L~~I~~kf~~sy~~L~~-RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~a------Vr--~lllP~L~~y~~~Le~~l 312 (495)
|..+|++|+.....+-. -|...|.+.=.+|....-..-||+.-+.++.... |. ..+++-..-+...+-|++
T Consensus 235 l~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL 314 (370)
T PF08506_consen 235 LRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPEL 314 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHh
Confidence 99999999875444333 3334444334588888899999999887773322 11 123444445556778888
Q ss_pred hhhhhhhhhhhhHHHHHHH
Q 011039 313 LLEKQKNEVKRHEAWRVYG 331 (495)
Q Consensus 313 ~~~~~~~~~~r~ea~~v~~ 331 (495)
..+.......|.+|-++.-
T Consensus 315 ~~~~~~~piLka~aik~~~ 333 (370)
T PF08506_consen 315 QPDVNSHPILKADAIKFLY 333 (370)
T ss_dssp H-SS-S-HHHHHHHHHHHH
T ss_pred cccCCCCcchHHHHHHHHH
Confidence 7333344556677766543
No 38
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=53.17 E-value=1.3e+02 Score=28.24 Aligned_cols=91 Identities=22% Similarity=0.257 Sum_probs=62.1
Q ss_pred chHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCchhhhHHHHHHHhhCHH-HHHHhhccCh-HHHHHhh
Q 011039 231 HWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGPN-VVRLLLLPNL-GPYLSLL 308 (495)
Q Consensus 231 hw~LRd~AA~lL~~I~~kf~~sy~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~-aVr~lllP~L-~~y~~~L 308 (495)
|..+|--+...++.+|.+|. ++--+.+..+.+.|.|+ ....+..|+..|+.|-.+ .++. -+.+ ..+...|
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~----~~ve~~~~~l~~~L~D~--~~~VR~~al~~Ls~Li~~d~ik~--k~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYP----NLVEPYLPNLYKCLRDE--DPLVRKTALLVLSHLILEDMIKV--KGQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCc----HHHHhHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHcCceee--hhhhhHHHHHHH
Confidence 56899999999999999974 56677788888889876 577789999999988432 1111 1122 2232222
Q ss_pred hHhHhhhhhhhhhhhhHHHHHHHHHHHH
Q 011039 309 EPEMLLEKQKNEVKRHEAWRVYGALLQA 336 (495)
Q Consensus 309 e~~l~~~~~~~~~~r~ea~~v~~aLl~A 336 (495)
. ..|..+|.-|..+..-+..-
T Consensus 73 ----~---D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 73 ----V---DENPEIRSLARSFFSELLKK 93 (178)
T ss_pred ----c---CCCHHHHHHHHHHHHHHHHh
Confidence 2 23566777777777666655
No 39
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=52.93 E-value=89 Score=29.87 Aligned_cols=114 Identities=15% Similarity=0.175 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHcc---CCchHHHHH---HHHhhhcCCCccccchhH-HHHHHHhhhcCCCCHHHHHHHHHHHHHHhc
Q 011039 125 RELQLYFDKITELAVS---RSDSVLFKQ---ALVSLATDSGLHPLVPYF-TYFVADEVSRGLNNYSLLFALMRVVWNLLQ 197 (495)
Q Consensus 125 kElQlYf~kIt~all~---~~d~~~r~~---AL~sL~tDpGL~qLLPYf-v~FI~e~V~~nl~nl~~L~~llrmv~ALl~ 197 (495)
.+...|++.+...++. ......+.. +|..+-...+ ..|.+ ..++..+..+ +|...=...++.+..++.
T Consensus 86 ~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~---~~~~~~~~~l~~~~~~--Kn~~vR~~~~~~l~~~l~ 160 (228)
T PF12348_consen 86 SHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS---YSPKILLEILSQGLKS--KNPQVREECAEWLAIILE 160 (228)
T ss_dssp GGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS----H--HHHHHHHHHHTT---S-HHHHHHHHHHHHHHHT
T ss_pred HhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC---cHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHHH
Confidence 3344455555554433 222233444 4555544433 22233 3333333322 444443445555555554
Q ss_pred CCC---ccc--chhhhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCC
Q 011039 198 NPH---IQI--EPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHV 252 (495)
Q Consensus 198 N~~---L~I--epYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~s 252 (495)
+-. -.+ ...+.++++.+..|+- |-.=++|+.|-.++..+.+.|+..
T Consensus 161 ~~~~~~~~l~~~~~~~~l~~~l~~~l~---------D~~~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 161 KWGSDSSVLQKSAFLKQLVKALVKLLS---------DADPEVREAARECLWALYSHFPER 211 (228)
T ss_dssp T-----GGG--HHHHHHHHHHHHHHHT---------SS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred HccchHhhhcccchHHHHHHHHHHHCC---------CCCHHHHHHHHHHHHHHHHHCCHh
Confidence 444 333 3356788888888873 334489999999999999888764
No 40
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=52.73 E-value=3e+02 Score=29.49 Aligned_cols=194 Identities=21% Similarity=0.251 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHHccCCchHHHHHHH---Hhhhc----CCCccccchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcC
Q 011039 126 ELQLYFDKITELAVSRSDSVLFKQAL---VSLAT----DSGLHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQN 198 (495)
Q Consensus 126 ElQlYf~kIt~all~~~d~~~r~~AL---~sL~t----DpGL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~N 198 (495)
+.+.+.+++++.+...+++..+..++ .+|-+ +..+...+-.+..-+ ..-...-.....+..+.=+++||+-.
T Consensus 186 ~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~Wi~KaLv~R 264 (415)
T PF12460_consen 186 DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSI-SSSEDSELRPQALEILIWITKALVMR 264 (415)
T ss_pred CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhh-cccCCcchhHHHHHHHHHHHHHHHHc
Confidence 55568899888877665544444433 34433 332222222222222 00001112456677788899999987
Q ss_pred CCcccchhhhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCC-----CCcc----hHHHHHHHHHHHhc
Q 011039 199 PHIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGH-----VYNT----LQTRLTKTLLNALL 269 (495)
Q Consensus 199 ~~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~-----sy~~----L~~RI~~tL~k~ll 269 (495)
.+ |..-+++.-++.++-. ..+...||+-++.|+..+.. .+.+ =|+|+..++...|.
T Consensus 265 ~~----~~~~~~~~~L~~lL~~-----------~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~ 329 (415)
T PF12460_consen 265 GH----PLATELLDKLLELLSS-----------PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLL 329 (415)
T ss_pred CC----chHHHHHHHHHHHhCC-----------hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHH
Confidence 65 5555555555554422 46788888888888755211 1122 36888888777775
Q ss_pred CCCCC----chhhhHHHHHHHhhCHHHHHHhhccChHHHHHhhhHhHhhhhhhhhhhhhHHHHHHHHHHHHHHHh
Q 011039 270 DPKRA----LTQHYGAVQGLAALGPNVVRLLLLPNLGPYLSLLEPEMLLEKQKNEVKRHEAWRVYGALLQAAGQC 340 (495)
Q Consensus 270 Dp~k~----l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~aLl~A~g~~ 340 (495)
+.-++ ....| +.+|+.+=..+=..++.|+++.++..|-+.+..+ +...+..+..+...++.-....
T Consensus 330 ~~~~~~~~~~k~~y--L~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~---~~~v~~s~L~tL~~~l~~~~~~ 399 (415)
T PF12460_consen 330 EGFKEADDEIKSNY--LTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLP---DADVLLSSLETLKMILEEAPEL 399 (415)
T ss_pred HHHhhcChhhHHHH--HHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHcCHHH
Confidence 43333 22334 5555555445557778999999998877777432 3344555555555554433333
No 41
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=52.44 E-value=17 Score=27.17 Aligned_cols=42 Identities=24% Similarity=0.422 Sum_probs=30.1
Q ss_pred HhcCCCcccchhhhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHH
Q 011039 195 LLQNPHIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAI 245 (495)
Q Consensus 195 Ll~N~~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I 245 (495)
|..+..-.+++|+.+++|.++.++ .|++-.+|..|+..|+.|
T Consensus 14 l~~~~~~~~~~~~~~~~~~L~~~L---------~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 14 LAEGCPELLQPYLPELLPALIPLL---------QDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp TTTTTHHHHHHHHHHHHHHHHHHT---------TSSSHHHHHHHHHHHHCH
T ss_pred HhcccHHHHHHHHHHHHHHHHHHH---------cCCCHHHHHHHHHHHhcC
Confidence 344555567888888888888765 133349999999988765
No 42
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=51.86 E-value=1.2e+02 Score=28.97 Aligned_cols=87 Identities=22% Similarity=0.314 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHccCCchHHHHHHHHhhhcCCCccccchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcCCCcccchh
Q 011039 127 LQLYFDKITELAVSRSDSVLFKQALVSLATDSGLHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHIQIEPY 206 (495)
Q Consensus 127 lQlYf~kIt~all~~~d~~~r~~AL~sL~tDpGL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~N~~L~IepY 206 (495)
.|.|.++|.+.|+.. +.+.|..|++-|+. -++..+-|..
T Consensus 6 ~Qryl~~Il~~~~~~-~~~vr~~Al~~l~~-----------------il~qGLvnP~----------------------- 44 (187)
T PF12830_consen 6 VQRYLKNILELCLSS-DDSVRLAALQVLEL-----------------ILRQGLVNPK----------------------- 44 (187)
T ss_pred HHHHHHHHHHHHhCC-CHHHHHHHHHHHHH-----------------HHhcCCCChH-----------------------
Confidence 589999999999974 45567767654432 3444433322
Q ss_pred hhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHh
Q 011039 207 LHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNAL 268 (495)
Q Consensus 207 LHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~sy~~L~~RI~~tL~k~l 268 (495)
+-+|.++... + +..=.+|..|-.++..++.||.+. +..|+..-...++
T Consensus 45 --~cvp~lIAL~------t---s~~~~ir~~A~~~l~~l~eK~~s~---v~~~~~~gi~~af 92 (187)
T PF12830_consen 45 --QCVPTLIALE------T---SPNPSIRSRAYQLLKELHEKHESL---VESRYSEGIRLAF 92 (187)
T ss_pred --HHHhHhhhhh------C---CCChHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHH
Confidence 2344443332 1 223489999999999999999853 5556555555444
No 43
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=51.56 E-value=57 Score=31.87 Aligned_cols=92 Identities=17% Similarity=0.357 Sum_probs=63.8
Q ss_pred CCCccccchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHH-hcCCCc--ccchhhhhhHHHHHHHHhccc--cCCCCC-Cc
Q 011039 157 DSGLHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNL-LQNPHI--QIEPYLHQLMPSVVTCLVAKR--LGNRLA-DN 230 (495)
Q Consensus 157 DpGL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~AL-l~N~~L--~IepYLHqLlPsvLTCll~k~--l~~~~~-~~ 230 (495)
...+-+++|-++.-|-..+ |-+|-+.....|++++.| ...+.+ .|-||+.||+| ++.....++ +|.... ..
T Consensus 71 ~~kilPvlPqLI~plk~AL--~tr~~~V~~~~L~~Lq~Lv~~~~~vG~aLvPyyrqLLp-~ln~f~~k~~n~gd~i~y~~ 147 (183)
T PF10274_consen 71 GEKILPVLPQLIIPLKRAL--NTRDPEVFCATLKALQQLVTSSDMVGEALVPYYRQLLP-VLNLFKNKNVNLGDGIDYRK 147 (183)
T ss_pred hhHHHHHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH-HHHHHHhcccCCCccccccc
Confidence 3446677777776665555 346888888899999888 455666 78899999999 555555554 332221 24
Q ss_pred chHHHHHHHHHHHHHHHHhCC
Q 011039 231 HWELRDFTAKLVAAICKRYGH 251 (495)
Q Consensus 231 hw~LRd~AA~lL~~I~~kf~~ 251 (495)
.=.++|.-...|..+.+.-|.
T Consensus 148 ~~~~~dlI~etL~~lE~~GG~ 168 (183)
T PF10274_consen 148 RKNLGDLIQETLELLERNGGP 168 (183)
T ss_pred ccchhHHHHHHHHHHHHhcCh
Confidence 457899999999888776665
No 44
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=50.10 E-value=2e+02 Score=29.91 Aligned_cols=97 Identities=16% Similarity=0.232 Sum_probs=61.7
Q ss_pred ccchhhhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHhcCCCCCchhhh
Q 011039 202 QIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYG--HVYNTLQTRLTKTLLNALLDPKRALTQHY 279 (495)
Q Consensus 202 ~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~--~sy~~L~~RI~~tL~k~llDp~k~l~t~Y 279 (495)
+++.+...|+..++.|+ |+ |.. .=+..|+++++.+|-+.| .....+-..+...|.+++.|...+...+=
T Consensus 79 ~v~~~~~tL~~~~~k~l--kk-g~~------~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~ 149 (309)
T PF05004_consen 79 FVEDRRETLLDALLKSL--KK-GKS------EEQALAARALALLALTLGAGEDSEEIFEELKPVLKRILTDSSASPKARA 149 (309)
T ss_pred HHHHHHHHHHHHHHHHh--cc-CCH------HHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHHHHhCCccchHHHH
Confidence 55566666777777776 11 221 236789999999999966 66778888999999999999877655433
Q ss_pred HHHHH------HHhhCHHHHHHhhccChHHHHHhh
Q 011039 280 GAVQG------LAALGPNVVRLLLLPNLGPYLSLL 308 (495)
Q Consensus 280 GAI~G------L~aLG~~aVr~lllP~L~~y~~~L 308 (495)
.++.+ +..-+.+.+..+ +..+..+|...
T Consensus 150 ~~~~aLai~~fv~~~d~~~~~~~-~~~le~if~~~ 183 (309)
T PF05004_consen 150 ACLEALAICTFVGGSDEEETEEL-MESLESIFLLS 183 (309)
T ss_pred HHHHHHHHHHHhhcCChhHHHHH-HHHHHHHHHHH
Confidence 33322 223344444432 34555555443
No 45
>KOG1823 consensus DRIM (Down-regulated in metastasis)-like proteins [Defense mechanisms]
Probab=49.06 E-value=42 Score=41.50 Aligned_cols=116 Identities=25% Similarity=0.257 Sum_probs=72.5
Q ss_pred HHHHHHHHhcCCCcccchhhhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCCc-chHHHHHHHHHH
Q 011039 188 LMRVVWNLLQNPHIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYN-TLQTRLTKTLLN 266 (495)
Q Consensus 188 llrmv~ALl~N~~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~sy~-~L~~RI~~tL~k 266 (495)
.+-++.+.+.|..+... .||+++-=+-..+.++ ..++||.|-++++.|.+--|..|- .+-+.+--|+.+
T Consensus 544 ~~~~~~~~l~~~~i~~~-~L~~illkic~~l~~~---------s~e~rd~srktl~~i~k~Lg~~yl~~Vi~el~~Tl~r 613 (1364)
T KOG1823|consen 544 ALVFLVLFLGNAEIVLR-NLPSILLDICYLLRSR---------SAELRDASRKTLAKIIKILGPKYLYFVIKELQTTLKR 613 (1364)
T ss_pred HHHHHHhcccchHHHHh-cCcHHHHHHHHHHhhh---------hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34455555666555443 3333332222223333 348999999999999988887663 566677777777
Q ss_pred HhcCCCCCchhhh--HHHHHHHhhCHHHHHHhhccChHHHHHhhhHhHhhh
Q 011039 267 ALLDPKRALTQHY--GAVQGLAALGPNVVRLLLLPNLGPYLSLLEPEMLLE 315 (495)
Q Consensus 267 ~llDp~k~l~t~Y--GAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l~~~ 315 (495)
.+.--...++.|| ||+.+...-|. ...++=|.+....+.+--+...+
T Consensus 614 g~q~hvl~~tvh~ll~a~~~v~~~g~--Ld~~~~~~i~i~~e~~fg~v~~e 662 (1364)
T KOG1823|consen 614 GFQVHVLSYTVHYLLGAMKNVLKAGS--LDTCLDPIIKIFNENLFGEVGKE 662 (1364)
T ss_pred hhhhhhhHHHHHHHHHHHhccccccc--HHHHHHHHHHHHHHHHHHHHhhh
Confidence 7766666777787 77776666665 34445556666666665555444
No 46
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=48.32 E-value=1.3e+02 Score=37.31 Aligned_cols=157 Identities=18% Similarity=0.265 Sum_probs=87.0
Q ss_pred ccCCchHHHHHHHHhhhc-----------CCCc--cccchhHHHHHHHhhhc--------CCCCHHH-HHHHHHHHHHHh
Q 011039 139 VSRSDSVLFKQALVSLAT-----------DSGL--HPLVPYFTYFVADEVSR--------GLNNYSL-LFALMRVVWNLL 196 (495)
Q Consensus 139 l~~~d~~~r~~AL~sL~t-----------DpGL--~qLLPYfv~FI~e~V~~--------nl~nl~~-L~~llrmv~ALl 196 (495)
+..++..+|..||..|.. |.-| .-|+|.+-++..+.-.. |+..++. ..+.+..+++|-
T Consensus 471 ~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~ 550 (1431)
T KOG1240|consen 471 LMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELR 550 (1431)
T ss_pred hcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHH
Confidence 334455677777765532 3332 34788888888773222 2223322 233667777766
Q ss_pred cC-----------CCcccchhhhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHH
Q 011039 197 QN-----------PHIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHV-YNTLQTRLTKTL 264 (495)
Q Consensus 197 ~N-----------~~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~s-y~~L~~RI~~tL 264 (495)
+| +...-+-|+|+|+-.|=--+++=-.++.+ -+|.-=-+-|..+|.=||.. .+.+ |+..|
T Consensus 551 ~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~-----~Vkr~Lle~i~~LC~FFGk~ksND~---iLshL 622 (1431)
T KOG1240|consen 551 QAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPP-----IVKRALLESIIPLCVFFGKEKSNDV---ILSHL 622 (1431)
T ss_pred hcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCch-----HHHHHHHHHHHHHHHHhhhcccccc---hHHHH
Confidence 66 22345667777766544333321111211 23333333377788888762 2222 33344
Q ss_pred HHHhcCCCCC-chhhhHHHHHHHhh-CHHHHHHhhccChHH
Q 011039 265 LNALLDPKRA-LTQHYGAVQGLAAL-GPNVVRLLLLPNLGP 303 (495)
Q Consensus 265 ~k~llDp~k~-l~t~YGAI~GL~aL-G~~aVr~lllP~L~~ 303 (495)
...|-|.+.- -+.-|-.|.|++.+ |+..+...|+|.|..
T Consensus 623 iTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q 663 (1431)
T KOG1240|consen 623 ITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQ 663 (1431)
T ss_pred HHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHH
Confidence 4444554433 35678888899877 999888888887654
No 47
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=47.90 E-value=95 Score=37.23 Aligned_cols=140 Identities=19% Similarity=0.263 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHccC------CchHHHHHHHHhhhcCCCccccchhHHHHHHHhhhc--CCCCHHHHHHHHHHHHHHhcCC
Q 011039 128 QLYFDKITELAVSR------SDSVLFKQALVSLATDSGLHPLVPYFTYFVADEVSR--GLNNYSLLFALMRVVWNLLQNP 199 (495)
Q Consensus 128 QlYf~kIt~all~~------~d~~~r~~AL~sL~tDpGL~qLLPYfv~FI~e~V~~--nl~nl~~L~~llrmv~ALl~N~ 199 (495)
|.||-.|.-.++.. +.....-+||..+=++--.++++|.+-.-+-= +-+ .+.|...-...++.+.-++.=-
T Consensus 862 QRfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPL-LLq~Ls~~D~~v~vstl~~i~~~l~~~ 940 (1030)
T KOG1967|consen 862 QRFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPL-LLQALSMPDVIVRVSTLRTIPMLLTES 940 (1030)
T ss_pred HHHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHH-HHHhcCCCccchhhhHhhhhhHHHHhc
Confidence 77888887776542 22344567886655555558887776543322 111 2234443233445555555544
Q ss_pred CcccchhhhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHhcCCCCC
Q 011039 200 HIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHV-YNTLQTRLTKTLLNALLDPKRA 274 (495)
Q Consensus 200 ~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~s-y~~L~~RI~~tL~k~llDp~k~ 274 (495)
+=-+..|+.-++|.+|..- ..+.++--..|..|=++|..+.++--.. -..-|+.+++.+.+.|-||++-
T Consensus 941 ~tL~t~~~~Tlvp~lLsls------~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRl 1010 (1030)
T KOG1967|consen 941 ETLQTEHLSTLVPYLLSLS------SDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRL 1010 (1030)
T ss_pred cccchHHHhHHHHHHHhcC------CCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHH
Confidence 5556788889999777642 2222334789999999999999865443 3456889999999999988764
No 48
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=47.74 E-value=3.3e+02 Score=27.91 Aligned_cols=198 Identities=16% Similarity=0.076 Sum_probs=95.2
Q ss_pred ccCCHHHHHHHHHHHHHHccCCchHHHHHHHHhhhcCCCccccchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcCCC
Q 011039 121 HILSRELQLYFDKITELAVSRSDSVLFKQALVSLATDSGLHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPH 200 (495)
Q Consensus 121 h~LSkElQlYf~kIt~all~~~d~~~r~~AL~sL~tDpGL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~N~~ 200 (495)
..+|.|.-.+.+++-..... .|++. +..|.. ....-|+..+..- .++...+.|++.++.-|+....
T Consensus 24 ~~is~~~~~~ik~~~~~~~~-----~~~~~---~~~~~~--~~~~~~l~lL~~~----~~~~d~v~yvL~li~dll~~~~ 89 (312)
T PF03224_consen 24 GLISEEDLSLIKKLDKQSKE-----ERREL---LEEDGD--QYASLFLNLLNKL----SSNDDTVQYVLTLIDDLLSDDP 89 (312)
T ss_dssp TSS-HHHHHHHHHHHHHHH-----------------------------HHHHHH-------HHHHHHHHHHHHHHHH-SS
T ss_pred CCCCHHHHHHHHHHHCCCHH-----HHHHH---HHhchh--hHHHHHHHHHHHc----cCcHHHHHHHHHHHHHHHhcCH
Confidence 46788888888887665432 12222 232221 2222233333331 2678999999999988888776
Q ss_pred cccchhhhhhHH----HHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCC--
Q 011039 201 IQIEPYLHQLMP----SVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRA-- 274 (495)
Q Consensus 201 L~IepYLHqLlP----svLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~sy~~L~~RI~~tL~k~llDp~k~-- 274 (495)
.....++.+-. ...+.++. .+ . .++|.+...|+.+|+.++...+..-......++..+.+.+.+-.++
T Consensus 90 -~~~~~~~~~~~~~~~~~~~~fl~-ll-~---~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~ 163 (312)
T PF03224_consen 90 -SRVELFLELAKQDDSDPYSPFLK-LL-D---RNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSD 163 (312)
T ss_dssp -SSHHHHHHHHH-TTH--HHHHHH-H--S----SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHH
T ss_pred -HHHHHHHHhcccccchhHHHHHH-Hh-c---CCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCC
Confidence 33333443221 12222221 12 2 3478999999999999988777655544456666666666543332
Q ss_pred chhhhHHHHHHHhh-CHHHHHHhhccChHHHHHhhhHhHhhhhhhhhhhhhHHHHHHHHHHHHHHHhHh
Q 011039 275 LTQHYGAVQGLAAL-GPNVVRLLLLPNLGPYLSLLEPEMLLEKQKNEVKRHEAWRVYGALLQAAGQCIY 342 (495)
Q Consensus 275 l~t~YGAI~GL~aL-G~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~aLl~A~g~~~~ 342 (495)
....+.|+.+|+.| ..+..|..++= ......|-+-+.. ...........-.|.+++.-=-..+.
T Consensus 164 ~~~~~~av~~L~~LL~~~~~R~~f~~--~~~v~~l~~iL~~--~~~~~~~~~~Ql~Y~~ll~lWlLSF~ 228 (312)
T PF03224_consen 164 SELQYIAVQCLQNLLRSKEYRQVFWK--SNGVSPLFDILRK--QATNSNSSGIQLQYQALLCLWLLSFE 228 (312)
T ss_dssp H---HHHHHHHHHHHTSHHHHHHHHT--HHHHHHHHHHHH-----------HHHHHHHHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHhCcchhHHHHHh--cCcHHHHHHHHHh--hcccCCCCchhHHHHHHHHHHHHhcC
Confidence 23348999999988 66777776543 3333333332210 01112233445556666554333333
No 49
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.80 E-value=86 Score=39.51 Aligned_cols=113 Identities=19% Similarity=0.217 Sum_probs=71.3
Q ss_pred ccchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhc-CCCcccchhhhhhHHHHHHHHhccccCCCCCCcchHHHHHHHH
Q 011039 162 PLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQ-NPHIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAK 240 (495)
Q Consensus 162 qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~-N~~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~ 240 (495)
-+.|-|++-+.. .+........-...+.++++.+= |.+++-+.-...|-- ++-|++ .|++.+.|+.||.
T Consensus 1522 ~l~~e~l~~l~~-~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~-l~~s~l--------~D~~i~vre~Aa~ 1591 (1710)
T KOG1851|consen 1522 HLQPEFLRDLKM-LTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRK-LLESLL--------NDDQIEVREEAAK 1591 (1710)
T ss_pred hhHHHHHHHHHH-HhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHH-HHHHHH--------cchHHHHHHHHHH
Confidence 456777766665 23322344544456777776553 333333333333333 222222 2566789999999
Q ss_pred HHHHHH-HHhCCCCcchHHHHHHHHHHHhcCCCCCchhhhHHHHHHHhh
Q 011039 241 LVAAIC-KRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAAL 288 (495)
Q Consensus 241 lL~~I~-~kf~~sy~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aL 288 (495)
+|+-+. ..|....+ +..+++.+.+..+.+.....-||+.||+|+
T Consensus 1592 ~Lsgl~~~s~~~~~~----~k~d~~~~~~~s~s~~~i~~HgavlgLgA~ 1636 (1710)
T KOG1851|consen 1592 CLSGLLQGSKFQFVS----DKRDTTSNILQSKSKDEIKAHGAVLGLGAI 1636 (1710)
T ss_pred HHHHHHhccccccch----HhhhhhhhhhhhcchHHHHhhhhHHHHHHH
Confidence 999883 34444333 777888888888888888889999999987
No 50
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=45.75 E-value=1.8e+02 Score=28.03 Aligned_cols=127 Identities=19% Similarity=0.197 Sum_probs=77.8
Q ss_pred cchhhhhhHHHHHHHHhcc-------ccCCCC--CCcchHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCC
Q 011039 203 IEPYLHQLMPSVVTCLVAK-------RLGNRL--ADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKR 273 (495)
Q Consensus 203 IepYLHqLlPsvLTCll~k-------~l~~~~--~~~hw~LRd~AA~lL~~I~~kf~~sy~~L~~RI~~tL~k~llDp~k 273 (495)
|-|+|-+++|.++.=...+ ++|+.- .||-.++|..|=.+|..+...+....+ -..+.......|-| ..
T Consensus 3 i~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~~--~~~~~~~v~~GL~D-~~ 79 (169)
T PF08623_consen 3 IRPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRID--ISEFLDRVEAGLKD-EH 79 (169)
T ss_dssp TTTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS---HHHHHHHHHHTTSS--H
T ss_pred hHHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhCC--HHHHHHHHHhhcCC-cH
Confidence 4577889999888655443 245532 589999999999999999997766544 34456666777777 33
Q ss_pred Cchh-hhHHHHHHHhhCHHHHHHhhccChHHHHHhhhHhHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 011039 274 ALTQ-HYGAVQGLAALGPNVVRLLLLPNLGPYLSLLEPEMLLEKQKNEVKRHEAWRVYGALLQAA 337 (495)
Q Consensus 274 ~l~t-~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~aLl~A~ 337 (495)
.+.. -|.-+.=|..+.+..+.. +|..+.+.++..+.. +.+....+.|.+|...+.-.++
T Consensus 80 DIk~L~~~~l~kl~~~~p~~v~~----~Ld~l~~~l~~~L~~-k~k~~AvkQE~Ek~~E~~rs~l 139 (169)
T PF08623_consen 80 DIKMLCHLMLSKLAQLAPEEVLQ----RLDSLVEPLRKTLSK-KLKENAVKQEIEKQQELIRSVL 139 (169)
T ss_dssp HHHHHHHHHHHHHHHS-HHHHHH----CCTTTHHHHHHHHH-----TTS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCHHHHHH----HHHHHHHHHHHHhhc-cCCCCcccccHHHHHHHHHHHH
Confidence 3222 256666677777766554 466666666666653 3444556677777666554433
No 51
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.12 E-value=47 Score=39.26 Aligned_cols=105 Identities=19% Similarity=0.303 Sum_probs=64.8
Q ss_pred cchHHHHHHHHHHHhcCCCCCchhhh-----HHHHHHH-hhCHHHHHHhhccChHHHHHhhhHhHhhhhhhhhhhhhHHH
Q 011039 254 NTLQTRLTKTLLNALLDPKRALTQHY-----GAVQGLA-ALGPNVVRLLLLPNLGPYLSLLEPEMLLEKQKNEVKRHEAW 327 (495)
Q Consensus 254 ~~L~~RI~~tL~k~llDp~k~l~t~Y-----GAI~GL~-aLG~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~ 327 (495)
+.+-++++..+.++--+|++|-.+|| |++.--. .-|+.+|-.+..--++.+...|...+.+ ----+.
T Consensus 588 ~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI~E-------fiPYvf 660 (960)
T KOG1992|consen 588 PELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSEDIQE-------FIPYVF 660 (960)
T ss_pred hHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH
Confidence 56777888888888899999999999 5544332 3365555544332232222222211111 011346
Q ss_pred HHHHHHHHHHHH-hHhhhhccCCCCCCCCccchhcccCcccc
Q 011039 328 RVYGALLQAAGQ-CIYDRLKIFPPLSSLPARSVWKTNGIVAT 368 (495)
Q Consensus 328 ~v~~aLl~A~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (495)
++.+.|+...+. .-.+....||.+++| ++|+++|+|-.
T Consensus 661 Qlla~lve~~~~~ip~~~~~l~~~lLsp---~lW~r~gNipa 699 (960)
T KOG1992|consen 661 QLLAVLVEHSSGTIPDSYSPLFPPLLSP---NLWKRSGNIPA 699 (960)
T ss_pred HHHHHHHHhcCCCCchhHHHHHHHhcCH---HHHhhcCCcHH
Confidence 667777666554 555677788888887 78999998743
No 52
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.14 E-value=1.3e+02 Score=33.82 Aligned_cols=106 Identities=17% Similarity=0.101 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCchhhhHHHHHHHhhCHHHHHHhhccChHHHHHhhhHhH
Q 011039 233 ELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGPNVVRLLLLPNLGPYLSLLEPEM 312 (495)
Q Consensus 233 ~LRd~AA~lL~~I~~kf~~sy~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l 312 (495)
.+|..|++.|+....-.-+..-+-++.+.......|.|+.+ ....--|+.||...-..+.-.-+-|.+..+.-++.+-.
T Consensus 273 ~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~-~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~ 351 (533)
T KOG2032|consen 273 KSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLN-EEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLF 351 (533)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHH
Confidence 78888888888776543334446777888888999999888 77888899999988666665556788888887777766
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHHhHh
Q 011039 313 LLEKQKNEVKRHEAWRVYGALLQAAGQCIY 342 (495)
Q Consensus 313 ~~~~~~~~~~r~ea~~v~~aLl~A~g~~~~ 342 (495)
.++ +...|..|....|+|..-+|.--+
T Consensus 352 ~se---~~~~R~aa~~Lfg~L~~l~g~~~e 378 (533)
T KOG2032|consen 352 DSE---DDKMRAAAFVLFGALAKLAGGGWE 378 (533)
T ss_pred Hhc---ChhhhhhHHHHHHHHHHHcCCCch
Confidence 544 456799999999999998775433
No 53
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=42.64 E-value=3.8e+02 Score=28.46 Aligned_cols=144 Identities=9% Similarity=0.164 Sum_probs=87.3
Q ss_pred CccccchhHHHHHHHhhhcCC-----CCHHHHHHHHHHHHHHhcCCCc--ccchhhhh-hHHHHHHHHhccccCCCCCCc
Q 011039 159 GLHPLVPYFTYFVADEVSRGL-----NNYSLLFALMRVVWNLLQNPHI--QIEPYLHQ-LMPSVVTCLVAKRLGNRLADN 230 (495)
Q Consensus 159 GL~qLLPYfv~FI~e~V~~nl-----~nl~~L~~llrmv~ALl~N~~L--~IepYLHq-LlPsvLTCll~k~l~~~~~~~ 230 (495)
.++.-++.|++||...+.... .+..+....+|+.-.++.||.| .|..=... ++--.+.++..... +
T Consensus 32 ~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~---~--- 105 (372)
T PF12231_consen 32 ALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNS---P--- 105 (372)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCC---C---
Confidence 356778899999999888743 3567788899999999999987 34322222 33333333333222 1
Q ss_pred chHHHHHHHHHHHHH-HHHhCCCC-cchHHHHHHHHHHHhcCCCCCchhhhHHHHHHHhhCHHHHHHhhccChHHHHHhh
Q 011039 231 HWELRDFTAKLVAAI-CKRYGHVY-NTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGPNVVRLLLLPNLGPYLSLL 308 (495)
Q Consensus 231 hw~LRd~AA~lL~~I-~~kf~~sy-~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~L 308 (495)
...+...|.-| ..+|+..+ +.-++..+-+.+..+.++-.+....+.++.++..|-.+.-.. ...+...|...|
T Consensus 106 ----K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~-M~~~~~~W~~~l 180 (372)
T PF12231_consen 106 ----KSICTHYLWCLSDQKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQ-MIKHADIWFPIL 180 (372)
T ss_pred ----HHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 22333333333 24566654 333333334444555666778888899999999887766544 356666666655
Q ss_pred hHhHh
Q 011039 309 EPEML 313 (495)
Q Consensus 309 e~~l~ 313 (495)
-+.+.
T Consensus 181 ~~~l~ 185 (372)
T PF12231_consen 181 FPDLL 185 (372)
T ss_pred HHHHh
Confidence 55554
No 54
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=42.60 E-value=16 Score=29.91 Aligned_cols=20 Identities=30% Similarity=0.444 Sum_probs=18.0
Q ss_pred CCCCCCCCChhHHHHHHHhc
Q 011039 2 RHSRRTTLTTDDVDEALKLR 21 (495)
Q Consensus 2 rHsKR~kLTt~DIn~ALr~~ 21 (495)
+|.||.++...||..||+-.
T Consensus 48 kHr~~~tv~~~Di~l~l~r~ 67 (72)
T cd07981 48 KHRKSDTLEVKDVQLHLERN 67 (72)
T ss_pred HHcCCCCCCHHHHHHHHHHh
Confidence 69999999999999999753
No 55
>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
Probab=41.85 E-value=38 Score=38.23 Aligned_cols=121 Identities=14% Similarity=0.220 Sum_probs=77.2
Q ss_pred hcCCCcccc--chhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcCCCcccchhhhhhHHHHHHHH----------hccc
Q 011039 155 ATDSGLHPL--VPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHIQIEPYLHQLMPSVVTCL----------VAKR 222 (495)
Q Consensus 155 ~tDpGL~qL--LPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~N~~L~IepYLHqLlPsvLTCl----------l~k~ 222 (495)
.+.||+.-. =||+.+|+-+....++ -.+.++++++|-..|-+|+..-+-.++=-+|+.- .-.+
T Consensus 162 k~q~~lsk~v~~k~l~~~~fesflk~l-----~fr~levle~ls~d~i~~Vk~qvv~~VydLL~a~peqe~nLl~L~INK 236 (821)
T COG5593 162 KNQPGLSKEVQNKYLKQRIFESFLKNL-----RFRVLEVLEVLSHDPIQYVKKQVVRLVYDLLEARPEQEVNLLHLFINK 236 (821)
T ss_pred hcCcchhhhhcchHHHHHHHHHHHHHH-----HHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 344555322 2788888887776643 3345666666666655554433222221111110 0012
Q ss_pred cCCCCCCcchHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCchhhhHHHHHHHhh
Q 011039 223 LGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAAL 288 (495)
Q Consensus 223 l~~~~~~~hw~LRd~AA~lL~~I~~kf~~sy~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aL 288 (495)
+| +.|+.-|+--++++-+.....|+++.=|++-.-...+.|+..+.+.|=|++.|...
T Consensus 237 lG--------Dk~~kvsskasY~ilkLe~~hP~mk~VV~d~Iedf~f~pn~~~~s~yyalitLnqt 294 (821)
T COG5593 237 LG--------DKRDKVSSKASYVILKLELLHPGMKEVVLDGIEDFYFKPNDLFRSRYYALITLNQT 294 (821)
T ss_pred hc--------cchhhhhhhhhHHHHHHHhcCCchhHHHHhhhhHheeccccccceeeeeehhhHHH
Confidence 22 33666666667777787888899999999999999999999999999999988754
No 56
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.47 E-value=3.4e+02 Score=31.26 Aligned_cols=159 Identities=18% Similarity=0.159 Sum_probs=96.3
Q ss_pred cccchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcCCCcccchhhhhhHHHHHHHHhccccCCCCCCcchHHHHHHHH
Q 011039 161 HPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAK 240 (495)
Q Consensus 161 ~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~N~~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~ 240 (495)
.-=+|-|+.-+.|.+..- |...=..++.-+.-|-.=|.+.+-.|+..|++-+++.+ .|++-++|+.+..
T Consensus 162 tFsL~~~ipLL~eriy~~--n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~L---------sD~s~eVr~~~~t 230 (675)
T KOG0212|consen 162 TFSLPEFIPLLRERIYVI--NPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNML---------SDSSDEVRTLTDT 230 (675)
T ss_pred ccCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHh---------cCCcHHHHHHHHH
Confidence 334777777777777653 55555567888888888999999999999999887765 3677799999998
Q ss_pred HHHHHHHHhCCCCcc-hHHHHHHHHHHHhcCCCCCchhhhHHHHHHHhhCHHHHHHhhccChHHHHHhhhHhHhhhhhhh
Q 011039 241 LVAAICKRYGHVYNT-LQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGPNVVRLLLLPNLGPYLSLLEPEMLLEKQKN 319 (495)
Q Consensus 241 lL~~I~~kf~~sy~~-L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l~~~~~~~ 319 (495)
+|+.....-.++-.+ =..++..++...+..+.. ..+--|+.=+.+|=+-.=+ .++|++..++..|-|-+.+.. +
T Consensus 231 ~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~--~iq~~al~Wi~efV~i~g~-~~l~~~s~il~~iLpc~s~~e--~ 305 (675)
T KOG0212|consen 231 LLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEP--EIQLKALTWIQEFVKIPGR-DLLLYLSGILTAILPCLSDTE--E 305 (675)
T ss_pred HHHHHHHHHhcCccccCcccchhhccccccCCcH--HHHHHHHHHHHHHhcCCCc-chhhhhhhhhhhcccCCCCCc--c
Confidence 888887665443333 234555555555543221 1222344444444221112 237788887777666554321 1
Q ss_pred hhhhhHHHHHHHHHHH
Q 011039 320 EVKRHEAWRVYGALLQ 335 (495)
Q Consensus 320 ~~~r~ea~~v~~aLl~ 335 (495)
...+.-|..+-+.|+.
T Consensus 306 ~~i~~~a~~~n~~l~~ 321 (675)
T KOG0212|consen 306 MSIKEYAQMVNGLLLK 321 (675)
T ss_pred ccHHHHHHHHHHHHHH
Confidence 1233344444445544
No 57
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=39.82 E-value=1.5e+02 Score=32.31 Aligned_cols=177 Identities=21% Similarity=0.318 Sum_probs=93.5
Q ss_pred CCHHHHHH--HHHHHHHHccCCchH------HHHHHHHhhhcCCCccc-----cchhHHHHHHHhhhcCCCCHHHHHHHH
Q 011039 123 LSRELQLY--FDKITELAVSRSDSV------LFKQALVSLATDSGLHP-----LVPYFTYFVADEVSRGLNNYSLLFALM 189 (495)
Q Consensus 123 LSkElQlY--f~kIt~all~~~d~~------~r~~AL~sL~tDpGL~q-----LLPYfv~FI~e~V~~nl~nl~~L~~ll 189 (495)
.+.|+|+| |-++|..+.+.+=++ .|+.+ -|-++.|-|++ .||+|+.|.-+ +.+++-.++.-..+-
T Consensus 63 i~meqq~~~elp~lt~~l~SdDie~q~qav~kFR~~-LS~E~~PPIq~VIdaGvVpRfvefm~~-~q~~mlqfEAaWalT 140 (526)
T COG5064 63 IPMEQQFYSELPQLTQQLFSDDIEQQLQAVYKFRKL-LSKETSPPIQPVIDAGVVPRFVEFMDE-IQRDMLQFEAAWALT 140 (526)
T ss_pred CchhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHH-hccccCCCchhHHhccccHHHHHHHHh-cchhHHHHHHHHHHh
Confidence 56777766 556777777532121 13333 36678888886 58999999864 332222222211121
Q ss_pred HHHHHHhcCCCcccchhhhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHH-hCCCCcchHHHHHHHHHHHh
Q 011039 190 RVVWNLLQNPHIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKR-YGHVYNTLQTRLTKTLLNAL 268 (495)
Q Consensus 190 rmv~ALl~N~~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k-f~~sy~~L~~RI~~tL~k~l 268 (495)
.++.-=-+-.++-++- --+|-++..+.+. .-++|+.|-=-|+.|.-. -+-.-.-|+.-.+..++..|
T Consensus 141 NiaSGtt~QTkvVvd~---~AVPlfiqlL~s~---------~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll 208 (526)
T COG5064 141 NIASGTTQQTKVVVDA---GAVPLFIQLLSST---------EDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLL 208 (526)
T ss_pred hhccCcccceEEEEeC---CchHHHHHHHcCc---------hHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHH
Confidence 1111111222333332 2344444444332 125677776666666311 00001235555666777777
Q ss_pred cCCCCCchhhhHHHHHHHhh--C------HHHHHHhhccChHHHHHhhhHhHhh
Q 011039 269 LDPKRALTQHYGAVQGLAAL--G------PNVVRLLLLPNLGPYLSLLEPEMLL 314 (495)
Q Consensus 269 lDp~k~l~t~YGAI~GL~aL--G------~~aVr~lllP~L~~y~~~Le~~l~~ 314 (495)
.....-+...--|-+.|+.| | +..|+.. +|-|..+....+++...
T Consensus 209 ~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqa-lpiL~KLiys~D~evlv 261 (526)
T COG5064 209 LSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQA-LPILAKLIYSRDPEVLV 261 (526)
T ss_pred HhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHH-HHHHHHHHhhcCHHHHH
Confidence 75444467777888888888 4 3456654 67776666665655543
No 58
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.75 E-value=6.2e+02 Score=31.44 Aligned_cols=222 Identities=16% Similarity=0.123 Sum_probs=124.9
Q ss_pred HHHHHHHhhhcCCCccccch-hHHHHHHHhhhcCC---C---------CHHHHHHHHH--HHHHHhcCC-Ccccchhhhh
Q 011039 146 LFKQALVSLATDSGLHPLVP-YFTYFVADEVSRGL---N---------NYSLLFALMR--VVWNLLQNP-HIQIEPYLHQ 209 (495)
Q Consensus 146 ~r~~AL~sL~tDpGL~qLLP-Yfv~FI~e~V~~nl---~---------nl~~L~~llr--mv~ALl~N~-~L~IepYLHq 209 (495)
.+..+|.+|.. |-.++| +++.||...|..-+ + -+..|..+++ +..-...+| .-.|++|+--
T Consensus 713 ~~~~rl~~L~~---L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~ 789 (1176)
T KOG1248|consen 713 AQASRLKCLKR---LLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSI 789 (1176)
T ss_pred HHHHHHHHHHH---HHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHH
Confidence 45556666655 566667 88888877666521 2 1344555552 222233444 3344444432
Q ss_pred hHHHHHHHHhccccCCCCCCcchHHHHHHHHHHH--HHHHHhCCC-CcchHHHHHHHHHHHhcCCCCCchhhhHHHHHHH
Q 011039 210 LMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVA--AICKRYGHV-YNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLA 286 (495)
Q Consensus 210 LlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~--~I~~kf~~s-y~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~ 286 (495)
|-+- -.|. ..|-.|+.|++ .|...|++- ....-..++.+..-.+. .++....=+||-++.
T Consensus 790 Isag--------l~gd-------~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~--s~sreI~kaAI~fik 852 (1176)
T KOG1248|consen 790 ISAG--------LVGD-------STRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLA--SNSREIAKAAIGFIK 852 (1176)
T ss_pred HHhh--------hccc-------HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHH
Confidence 2221 1122 33555555443 456666653 34566777777777775 566677788998888
Q ss_pred hhCHHHHHHhhccChHHHHHhhhHhHhhhhhhhhhhhhHHHHHHHHHHHHHHHhHhhhhccCCCCCCC-Cccchhc----
Q 011039 287 ALGPNVVRLLLLPNLGPYLSLLEPEMLLEKQKNEVKRHEAWRVYGALLQAAGQCIYDRLKIFPPLSSL-PARSVWK---- 361 (495)
Q Consensus 287 aLG~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~aLl~A~g~~~~~~~~~~~~~~~~-~~~~~~~---- 361 (495)
.+=..-=..++-|+++.++..|-. +.. +.+++.--+|...|=+-+.+|-.+.|+.|-..--- -.--+||
T Consensus 853 vlv~~~pe~~l~~~~~~LL~sll~-ls~-----d~k~~~r~Kvr~LlekLirkfg~~eLe~~~pee~~klL~nIRK~r~R 926 (1176)
T KOG1248|consen 853 VLVYKFPEECLSPHLEELLPSLLA-LSH-----DHKIKVRKKVRLLLEKLIRKFGAEELESFLPEEDMKLLTNIRKRRRR 926 (1176)
T ss_pred HHHHcCCHHHHhhhHHHHHHHHHH-HHH-----hhhHHHHHHHHHHHHHHHHHhCHHHHHhhCHHHHHHHHHHHHHHHHH
Confidence 886666667778888888876654 322 34555667788887777888888888887431000 0001222
Q ss_pred -ccCcccc-cCccccCCccccCC-CccccccccCC
Q 011039 362 -TNGIVAT-LSNKRKTSMDLEEQ-PPLKKIATDGP 393 (495)
Q Consensus 362 -~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~ 393 (495)
.+.+.+. ++.+++.+++...- |+.++-.++-.
T Consensus 927 ~~rK~a~~~d~~~~~~s~d~s~~~s~~~~a~~i~d 961 (1176)
T KOG1248|consen 927 KKRKKAMIVDIEDRSDSTDGSQKASAQKKAKTIED 961 (1176)
T ss_pred hhhhhhhhccccccccccccccccccccccchhHH
Confidence 1222232 45555555555544 66666555443
No 59
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=37.67 E-value=1.8e+02 Score=25.27 Aligned_cols=83 Identities=19% Similarity=0.144 Sum_probs=56.4
Q ss_pred HHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCchhhhHHHHHHHhhCHHHHHHhhccChHHHHHhhhHhHhhhhhhh
Q 011039 240 KLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGPNVVRLLLLPNLGPYLSLLEPEMLLEKQKN 319 (495)
Q Consensus 240 ~lL~~I~~kf~~sy~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l~~~~~~~ 319 (495)
.-|+.++.-.+..-..--..|+.-.++.|.|++ ...+|=|.-+|..+ .++.+..++|++..++..|-....+ .+
T Consensus 8 i~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d--~rVRy~AcEaL~ni-~k~~~~~~l~~f~~IF~~L~kl~~D---~d 81 (97)
T PF12755_consen 8 IGLAAVAIALGKDISKYLDEILPPVLKCFDDQD--SRVRYYACEALYNI-SKVARGEILPYFNEIFDALCKLSAD---PD 81 (97)
T ss_pred HHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcC---Cc
Confidence 344555555555445556677777788877554 45588888888888 4667788899999999887765543 35
Q ss_pred hhhhhHHHH
Q 011039 320 EVKRHEAWR 328 (495)
Q Consensus 320 ~~~r~ea~~ 328 (495)
..+|..|+-
T Consensus 82 ~~Vr~~a~~ 90 (97)
T PF12755_consen 82 ENVRSAAEL 90 (97)
T ss_pred hhHHHHHHH
Confidence 566766643
No 60
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=37.10 E-value=1e+02 Score=31.36 Aligned_cols=58 Identities=21% Similarity=0.085 Sum_probs=44.0
Q ss_pred CcchHHHHHHHHHHHHHHHHhCCCCcchH---------HHHHHHHHHHhcCCCCCchhhhHHHHHHHhh
Q 011039 229 DNHWELRDFTAKLVAAICKRYGHVYNTLQ---------TRLTKTLLNALLDPKRALTQHYGAVQGLAAL 288 (495)
Q Consensus 229 ~~hw~LRd~AA~lL~~I~~kf~~sy~~L~---------~RI~~tL~k~llDp~k~l~t~YGAI~GL~aL 288 (495)
.++-.+|-.|.+.+-.|.-.||..+-.-. ..+.+.|.+.+.+. ....+.=|+-|++.|
T Consensus 75 ~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~--~~~~~~~a~EGl~KL 141 (298)
T PF12719_consen 75 KDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSE--NPELQAIAVEGLCKL 141 (298)
T ss_pred hCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcC--CHHHHHHHHHHHHHH
Confidence 35779999999999999999997665443 35888999888755 444666777777765
No 61
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=34.88 E-value=2e+02 Score=34.68 Aligned_cols=115 Identities=23% Similarity=0.176 Sum_probs=80.7
Q ss_pred ccchhhhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhc----CCCC-Cch
Q 011039 202 QIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALL----DPKR-ALT 276 (495)
Q Consensus 202 ~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~sy~~L~~RI~~tL~k~ll----Dp~k-~l~ 276 (495)
-+-|.+.-|+|-+|.|+=-. ....|--+-+++....... ++|++.=..|+...|+ |++. +..
T Consensus 902 vllp~~~~LlPLLLq~Ls~~---------D~~v~vstl~~i~~~l~~~----~tL~t~~~~Tlvp~lLsls~~~~n~~~~ 968 (1030)
T KOG1967|consen 902 VLLPQFPMLLPLLLQALSMP---------DVIVRVSTLRTIPMLLTES----ETLQTEHLSTLVPYLLSLSSDNDNNMMV 968 (1030)
T ss_pred hhccchhhHHHHHHHhcCCC---------ccchhhhHhhhhhHHHHhc----cccchHHHhHHHHHHHhcCCCCCcchhH
Confidence 56688888888888887222 2244555556666665553 4566666666666664 3443 366
Q ss_pred hhhHHHHHHHhhCHHHHHHhhccChHHHHHhhhHhHhhhhhhhhhhhhHHHHHHHH
Q 011039 277 QHYGAVQGLAALGPNVVRLLLLPNLGPYLSLLEPEMLLEKQKNEVKRHEAWRVYGA 332 (495)
Q Consensus 277 t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~a 332 (495)
.+--|+.||.+|-...=-..++|+-+.....|.+-+.+. .+.+|.||.++.+.
T Consensus 969 VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk---KRlVR~eAv~tR~~ 1021 (1030)
T KOG1967|consen 969 VREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK---KRLVRKEAVDTRQN 1021 (1030)
T ss_pred HHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcH---HHHHHHHHHHHhhh
Confidence 778999999998764445566888888888899888764 46889999998875
No 62
>PTZ00429 beta-adaptin; Provisional
Probab=34.61 E-value=8.4e+02 Score=28.86 Aligned_cols=164 Identities=13% Similarity=0.091 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH-ccCCchHHHHHHHHhhhcCCCccccchhHHHHHHHhhhcCCCCHHHHHH------------HHHH
Q 011039 125 RELQLYFDKITELA-VSRSDSVLFKQALVSLATDSGLHPLVPYFTYFVADEVSRGLNNYSLLFA------------LMRV 191 (495)
Q Consensus 125 kElQlYf~kIt~al-l~~~d~~~r~~AL~sL~tDpGL~qLLPYfv~FI~e~V~~nl~nl~~L~~------------llrm 191 (495)
.+-..++++|+..+ +|.+-+.++-.++..++++ ..-+-.+++...........++..|.. ++|.
T Consensus 47 ~~kk~alKkvIa~mt~G~DvS~LF~dVvk~~~S~---d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRa 123 (746)
T PTZ00429 47 YRKKAAVKRIIANMTMGRDVSYLFVDVVKLAPST---DLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRA 123 (746)
T ss_pred HHHHHHHHHHHHHHHCCCCchHHHHHHHHHhCCC---CHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHH
Q ss_pred HHHHhcCCCcccchhhhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCCc--chHHHHHHHHHHHhc
Q 011039 192 VWNLLQNPHIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYN--TLQTRLTKTLLNALL 269 (495)
Q Consensus 192 v~ALl~N~~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~sy~--~L~~RI~~tL~k~ll 269 (495)
. ||=.=-.|.+.-.+-.++++|..|+ .+.+=.+|..||-.+.+|++.+.+... ++.+++...+.
T Consensus 124 L-ALRtLs~Ir~~~i~e~l~~~lkk~L---------~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~---- 189 (746)
T PTZ00429 124 L-AVRTMMCIRVSSVLEYTLEPLRRAV---------ADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLN---- 189 (746)
T ss_pred H-HHHHHHcCCcHHHHHHHHHHHHHHh---------cCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhc----
Q ss_pred CCCCCchhhhHHHHHHHhh---CHHHHHHhhccChHHHHHhh
Q 011039 270 DPKRALTQHYGAVQGLAAL---GPNVVRLLLLPNLGPYLSLL 308 (495)
Q Consensus 270 Dp~k~l~t~YGAI~GL~aL---G~~aVr~lllP~L~~y~~~L 308 (495)
++.....+.|+..|.++ +++.+ .+..+++..++..|
T Consensus 190 --D~dp~Vv~nAl~aL~eI~~~~~~~l-~l~~~~~~~Ll~~L 228 (746)
T PTZ00429 190 --DNNPVVASNAAAIVCEVNDYGSEKI-ESSNEWVNRLVYHL 228 (746)
T ss_pred --CCCccHHHHHHHHHHHHHHhCchhh-HHHHHHHHHHHHHh
No 63
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.54 E-value=2.2e+02 Score=32.14 Aligned_cols=135 Identities=19% Similarity=0.259 Sum_probs=76.5
Q ss_pred ccchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcCCCcccchhhhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHH
Q 011039 162 PLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKL 241 (495)
Q Consensus 162 qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~N~~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~l 241 (495)
.+||.||.|........+ .++.-..+-.++.--..+....++ +--+|.++.|+.+. |-++|+.|.--
T Consensus 109 G~v~~lV~~l~~~~~~~l-q~eAAWaLTnIAsgtse~T~~vv~---agavp~fi~Ll~s~---------~~~v~eQavWA 175 (514)
T KOG0166|consen 109 GVVPRLVEFLSRDDNPTL-QFEAAWALTNIASGTSEQTKVVVD---AGAVPIFIQLLSSP---------SADVREQAVWA 175 (514)
T ss_pred CcHHHHHHHHccCCChhH-HHHHHHHHHHHhcCchhhcccccc---CCchHHHHHHhcCC---------cHHHHHHHHHH
Confidence 578999999873221111 233333344444434445555554 45677777777543 33778888777
Q ss_pred HHHHHHHhCCCC--cchHHHHHHHHHHHhcCCCCCchhhhHHHHHHHhh--CH------HHHHHhhccChHHHHHhhhHh
Q 011039 242 VAAICKRYGHVY--NTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAAL--GP------NVVRLLLLPNLGPYLSLLEPE 311 (495)
Q Consensus 242 L~~I~~kf~~sy--~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aL--G~------~aVr~lllP~L~~y~~~Le~~ 311 (495)
|+.|...- ..+ .=|..-++..|+..+..+.+ +..+=-+.+.|+.| |. +.|+. ++|-|......-+++
T Consensus 176 LgNIagds-~~~Rd~vl~~g~l~pLl~~l~~~~~-~~~lRn~tW~LsNlcrgk~P~P~~~~v~~-iLp~L~~ll~~~D~~ 252 (514)
T KOG0166|consen 176 LGNIAGDS-PDCRDYVLSCGALDPLLRLLNKSDK-LSMLRNATWTLSNLCRGKNPSPPFDVVAP-ILPALLRLLHSTDEE 252 (514)
T ss_pred HhccccCC-hHHHHHHHhhcchHHHHHHhccccc-hHHHHHHHHHHHHHHcCCCCCCcHHHHHH-HHHHHHHHHhcCCHH
Confidence 77775331 111 11334455667777765444 77888899999998 66 34433 355555554443443
Q ss_pred H
Q 011039 312 M 312 (495)
Q Consensus 312 l 312 (495)
.
T Consensus 253 V 253 (514)
T KOG0166|consen 253 V 253 (514)
T ss_pred H
Confidence 3
No 64
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.48 E-value=1.9e+02 Score=36.65 Aligned_cols=79 Identities=15% Similarity=0.340 Sum_probs=63.3
Q ss_pred hcCCCccccchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcCCCcccchhhhhhHHHHHHHHhccccCCCCCCcchHH
Q 011039 155 ATDSGLHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWEL 234 (495)
Q Consensus 155 ~tDpGL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~N~~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~L 234 (495)
+-.|-+.+|+|.+.+|=.+ .|...-..|..+=.+|+.-+..-++.|+..|+-=+|--+ .+..|+.
T Consensus 991 kl~p~l~kLIPrLyRY~yD------P~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~l---------t~kewRV 1055 (1702)
T KOG0915|consen 991 KLEPYLKKLIPRLYRYQYD------PDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNL---------TSKEWRV 1055 (1702)
T ss_pred hhhhHHHHhhHHHhhhccC------CcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhc---------cchhHHH
Confidence 3456788899999888665 455666678888999999999999999998887555332 4678999
Q ss_pred HHHHHHHHHHHHHH
Q 011039 235 RDFTAKLVAAICKR 248 (495)
Q Consensus 235 Rd~AA~lL~~I~~k 248 (495)
|+-+.--|+.+++.
T Consensus 1056 ReasclAL~dLl~g 1069 (1702)
T KOG0915|consen 1056 REASCLALADLLQG 1069 (1702)
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999999886
No 65
>PF10441 Urb2: Urb2/Npa2 family; InterPro: IPR018849 This entry represents a conserved domain found towards the C terminus of proteins involved in ribosome biogenesis, such as the Urb2 protein from yeast [].
Probab=34.05 E-value=4.6e+02 Score=25.65 Aligned_cols=86 Identities=15% Similarity=0.209 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHhcCCCcccchhhhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCC----CCcchHH
Q 011039 183 SLLFALMRVVWNLLQNPHIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGH----VYNTLQT 258 (495)
Q Consensus 183 ~~L~~llrmv~ALl~N~~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~----sy~~L~~ 258 (495)
..+..++++++.|+......+..|--..+=++++.+..........++...+=.-.-++|..|++.+.. .+| +--
T Consensus 3 ~~~~~~l~~l~~ll~~~~~~~sq~~ie~~l~~~~~~~~~~~~~~~~~~~~~if~~~~~ll~~il~~hr~~l~~r~h-ll~ 81 (223)
T PF10441_consen 3 KSILLILEILKQLLSSKPWLFSQYNIEQILSILSTLFSSLRNTLSADSSPSIFISLCRLLSSILRHHRFKLSGRFH-LLL 81 (223)
T ss_pred hHHHHHHHHHHHHHhcCchhccchhHHHHHHHHHHHHcccccccccchhHHHHHHHHHHHHHHHHHhHHHHcCCCh-HHH
Confidence 345668899999999998888888765555566665554222222345556666677788888776533 333 333
Q ss_pred HHHHHHHHHhc
Q 011039 259 RLTKTLLNALL 269 (495)
Q Consensus 259 RI~~tL~k~ll 269 (495)
-+++.|++.|.
T Consensus 82 ~~l~~LL~~l~ 92 (223)
T PF10441_consen 82 SVLQRLLRCLF 92 (223)
T ss_pred HHHHHHHHHHH
Confidence 45566666666
No 66
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=33.17 E-value=3.8e+02 Score=25.04 Aligned_cols=79 Identities=18% Similarity=0.148 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHhcCCCCCchhhhHHHHHHHhh-----CH-HHHHHhhccChHHH
Q 011039 232 WELRDFTAKLVAAICKRYGH-VYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAAL-----GP-NVVRLLLLPNLGPY 304 (495)
Q Consensus 232 w~LRd~AA~lL~~I~~kf~~-sy~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aL-----G~-~aVr~lllP~L~~y 304 (495)
.+=|-.+..++..+|..++. ..-.=-...++.+.+.+.. ..+..+...|+..|..+ |. +-.|....|+++.+
T Consensus 39 ~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~-~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei~tp~l~~~ 117 (165)
T PF08167_consen 39 AYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEK-PDPPSVLEAAIITLTRLFDLIRGKPTLTREIATPNLPKF 117 (165)
T ss_pred hhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHhcCCCchHHHHhhccHHHH
Confidence 35577888888888887632 1212233455666666654 44566777788777766 22 45889999999999
Q ss_pred HHhhhHh
Q 011039 305 LSLLEPE 311 (495)
Q Consensus 305 ~~~Le~~ 311 (495)
...+-.-
T Consensus 118 i~~ll~l 124 (165)
T PF08167_consen 118 IQSLLQL 124 (165)
T ss_pred HHHHHHH
Confidence 8765543
No 67
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.15 E-value=2e+02 Score=35.48 Aligned_cols=111 Identities=19% Similarity=0.264 Sum_probs=68.9
Q ss_pred CHHHHHHHHHHHHHHccCCchHHHHH----HHH-------hhhcCCCccccchhHHHHHHHhhhcCCCCHHHHHHHHHHH
Q 011039 124 SRELQLYFDKITELAVSRSDSVLFKQ----ALV-------SLATDSGLHPLVPYFTYFVADEVSRGLNNYSLLFALMRVV 192 (495)
Q Consensus 124 SkElQlYf~kIt~all~~~d~~~r~~----AL~-------sL~tDpGL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv 192 (495)
+.-++.|+..|.+.++|. +..... |+. .+=+|+-++ .++.+|+--+..+ +-++...-+.++
T Consensus 780 ~~~lnefl~~Isagl~gd--~~~~~as~Ivai~~il~e~~~~ld~~~l~----~li~~V~~~L~s~--sreI~kaAI~fi 851 (1176)
T KOG1248|consen 780 SAILNEFLSIISAGLVGD--STRVVASDIVAITHILQEFKNILDDETLE----KLISMVCLYLASN--SREIAKAAIGFI 851 (1176)
T ss_pred HHHHHHHHHHHHhhhccc--HHHHHHHHHHHHHHHHHHHhccccHHHHH----HHHHHHHHHHhcC--CHHHHHHHHHHH
Confidence 445678999999988863 222221 222 223333344 4444444444433 334444455666
Q ss_pred HHHhc-CCCcccchhhhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCC
Q 011039 193 WNLLQ-NPHIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGH 251 (495)
Q Consensus 193 ~ALl~-N~~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~ 251 (495)
..++. =|-..+-+|+.+|||+++... + +---.+|-..-.||..+|++||-
T Consensus 852 kvlv~~~pe~~l~~~~~~LL~sll~ls--~-------d~k~~~r~Kvr~LlekLirkfg~ 902 (1176)
T KOG1248|consen 852 KVLVYKFPEECLSPHLEELLPSLLALS--H-------DHKIKVRKKVRLLLEKLIRKFGA 902 (1176)
T ss_pred HHHHHcCCHHHHhhhHHHHHHHHHHHH--H-------hhhHHHHHHHHHHHHHHHHHhCH
Confidence 55554 466688899999999998832 2 22337899999999999999995
No 68
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=32.78 E-value=79 Score=32.89 Aligned_cols=75 Identities=25% Similarity=0.358 Sum_probs=46.3
Q ss_pred HHHHHHHHhcCCCCCchhhhHHHHHHHhh-CHHHHHHhhccChHHHHHh--------------------hhHhHhhhhhh
Q 011039 260 LTKTLLNALLDPKRALTQHYGAVQGLAAL-GPNVVRLLLLPNLGPYLSL--------------------LEPEMLLEKQK 318 (495)
Q Consensus 260 I~~tL~k~llDp~k~l~t~YGAI~GL~aL-G~~aVr~lllP~L~~y~~~--------------------Le~~l~~~~~~ 318 (495)
.+.++.+.|.|.+.++..+|-|+.-|..+ |+.+|+.+.-=+... .+. |...+.++ ..
T Consensus 4 ~i~~i~~~L~~~s~~l~~r~rALf~Lr~l~~~~~i~~i~ka~~d~-s~llkhe~ay~LgQ~~~~~Av~~l~~vl~de-sq 81 (289)
T KOG0567|consen 4 EIETIGNILVNKSQPLQNRFRALFNLRNLLGPAAIKAITKAFIDD-SALLKHELAYVLGQMQDEDAVPVLVEVLLDE-SQ 81 (289)
T ss_pred HHHHHHHHHcCccHHHHHHHHHHHhhhccCChHHHHHHHHhcccc-hhhhccchhhhhhhhccchhhHHHHHHhccc-cc
Confidence 45677778888788888888888888877 444544432111111 111 22223333 34
Q ss_pred hhhhhhHHHHHHHHHHHH
Q 011039 319 NEVKRHEAWRVYGALLQA 336 (495)
Q Consensus 319 ~~~~r~ea~~v~~aLl~A 336 (495)
..++||||-.+.|++...
T Consensus 82 ~pmvRhEAaealga~~~~ 99 (289)
T KOG0567|consen 82 EPMVRHEAAEALGAIGDP 99 (289)
T ss_pred chHHHHHHHHHHHhhcch
Confidence 577899999999998743
No 69
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.67 E-value=9e+02 Score=29.61 Aligned_cols=135 Identities=16% Similarity=0.139 Sum_probs=78.5
Q ss_pred cchhHHHHHHHhhh------cCCCCHHHHHHHHHHHHHHhcCCCc-ccchhhhhhHHHHHHHHhccccCCCCCCcchHHH
Q 011039 163 LVPYFTYFVADEVS------RGLNNYSLLFALMRVVWNLLQNPHI-QIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELR 235 (495)
Q Consensus 163 LLPYfv~FI~e~V~------~nl~nl~~L~~llrmv~ALl~N~~L-~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LR 235 (495)
-+|-++.|+.+-++ ...+|.....--|+|+-+|. ..| .=.||-.++=--+.+ -|.+.+ ..+---||
T Consensus 407 ~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~--~~L~K~s~~~~~mE~flv~-hVfP~f----~s~~g~Lr 479 (1010)
T KOG1991|consen 407 TLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLA--SILLKKSPYKSQMEYFLVN-HVFPEF----QSPYGYLR 479 (1010)
T ss_pred hhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHH--HHHccCCchHHHHHHHHHH-HhhHhh----cCchhHHH
Confidence 45556666666655 33455555555666666665 111 233443332222222 222222 23445799
Q ss_pred HHHHHHHHHHH-HHhCCCCcchHHHHHHHHHHHhcCCCCCchhhhHHHHHHHhh-CH-HHHHHhhccChHHHHHh
Q 011039 236 DFTAKLVAAIC-KRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAAL-GP-NVVRLLLLPNLGPYLSL 307 (495)
Q Consensus 236 d~AA~lL~~I~-~kf~~sy~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aL-G~-~aVr~lllP~L~~y~~~ 307 (495)
-.|+-+++.+| -.|+. ++.-..+...-.+.|.+ .+.++..--|..+|..| .. +.....+-|+++..++.
T Consensus 480 arac~vl~~~~~~df~d--~~~l~~ale~t~~~l~~-d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~ 551 (1010)
T KOG1991|consen 480 ARACWVLSQFSSIDFKD--PNNLSEALELTHNCLLN-DNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQE 551 (1010)
T ss_pred HHHHHHHHHHHhccCCC--hHHHHHHHHHHHHHhcc-CCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHH
Confidence 99999999999 67876 45555666666777775 67788888899999988 22 22223344555555543
No 70
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=31.80 E-value=3.9e+02 Score=27.15 Aligned_cols=87 Identities=18% Similarity=0.243 Sum_probs=56.4
Q ss_pred HHHHh-cCCCcccchhhhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCC------cchHHHHHHHH
Q 011039 192 VWNLL-QNPHIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVY------NTLQTRLTKTL 264 (495)
Q Consensus 192 v~ALl-~N~~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~sy------~~L~~RI~~tL 264 (495)
...+. +-..=.++.+++.++|++|+.+ +|..-..|-.+..+|.+++.+....- .++-.=+.+.+
T Consensus 101 ~w~v~~~~~~~~i~~~~~liiP~iL~ll---------DD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al 171 (282)
T PF10521_consen 101 SWIVLSQLDRPWISQHWPLIIPPILNLL---------DDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDAL 171 (282)
T ss_pred HHHHHhcCCcchHHHhhhHHHhhHHHHh---------cCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHH
Confidence 33344 4444578899999999999986 23345789999999999998876543 33444444555
Q ss_pred HHHhc------CCCCC---chhhhHHHHHHHh
Q 011039 265 LNALL------DPKRA---LTQHYGAVQGLAA 287 (495)
Q Consensus 265 ~k~ll------Dp~k~---l~t~YGAI~GL~a 287 (495)
...+. ....+ +..-|.|+..|..
T Consensus 172 ~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~~ 203 (282)
T PF10521_consen 172 FPCLYYLPPITPEDESLELLQAAYPALLSLLK 203 (282)
T ss_pred HHHhhcCCCCCCchhhHHHHHHHHHHHHHHHH
Confidence 55554 11122 4556777777744
No 71
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=31.80 E-value=2.9e+02 Score=25.95 Aligned_cols=52 Identities=17% Similarity=0.308 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhcCCCcccchhhhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHh
Q 011039 186 FALMRVVWNLLQNPHIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRY 249 (495)
Q Consensus 186 ~~llrmv~ALl~N~~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf 249 (495)
...+.++.-|+.|..+.....+ +.-++.|+ .|+...+|+.|..++..+..+.
T Consensus 43 ~~al~~Ls~Li~~d~ik~k~~l---~~~~l~~l---------~D~~~~Ir~~A~~~~~e~~~~~ 94 (178)
T PF12717_consen 43 KTALLVLSHLILEDMIKVKGQL---FSRILKLL---------VDENPEIRSLARSFFSELLKKR 94 (178)
T ss_pred HHHHHHHHHHHHcCceeehhhh---hHHHHHHH---------cCCCHHHHHHHHHHHHHHHHhc
Confidence 3467778889999999888665 33455565 3667799999999999998884
No 72
>PF02291 TFIID-31kDa: Transcription initiation factor IID, 31kD subunit; InterPro: IPR003162 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription []. TAFII-31 protein is a transcriptional coactivator of the p53 protein [].; GO: 0006352 transcription initiation, DNA-dependent; PDB: 1TAF_A.
Probab=30.73 E-value=30 Score=31.87 Aligned_cols=49 Identities=29% Similarity=0.416 Sum_probs=16.8
Q ss_pred CCCCCCCCChhHHHHHHHhcCCCCCCCCCCCCCCceeEcCCCCceeeecCccccHHHHhhc-cCCCCC
Q 011039 2 RHSRRTTLTTDDVDEALKLRNVEPVYGFASGGPLRFRRAIGYRDLFYLDDKDVEFKDVIEA-PLPRAP 68 (495)
Q Consensus 2 rHsKR~kLTt~DIn~ALr~~nvEPLyGy~s~~pl~F~~a~g~~~ly~~eDkEVDL~~ii~a-~LPkvP 68 (495)
.|++|+..+.+||..|.+.+ .+|.-..+. ..|.-.++.+-.|+ |||.++
T Consensus 58 ~hA~~~~i~~~DVrLAi~~r-----~~~~f~~pp-------------pre~llelA~e~N~~PLP~i~ 107 (129)
T PF02291_consen 58 DHAGRSTIDADDVRLAIQSR-----LDHSFTQPP-------------PREFLLELAREKNSIPLPPIP 107 (129)
T ss_dssp HHTT-SSB-HHHHHHHHHHT------------------------------------------------
T ss_pred HhcccccCChHHHHHHHHHH-----HhhhccCCC-------------ChHHHHHHHHHhcCCCCCCCC
Confidence 58999999999999999988 333322222 12334556665664 788775
No 73
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=30.37 E-value=6e+02 Score=30.29 Aligned_cols=51 Identities=20% Similarity=0.091 Sum_probs=30.3
Q ss_pred CcchHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCchhhhHHHHHHHhhCH
Q 011039 229 DNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGP 290 (495)
Q Consensus 229 ~~hw~LRd~AA~lL~~I~~kf~~sy~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~ 290 (495)
|.++.+|..|+..|+.+... +.+...+..+|.|+ ....+++|+..|..+|.
T Consensus 786 D~d~~VR~aA~~aLg~~g~~---------~~~~~~l~~aL~d~--d~~VR~~Aa~aL~~l~~ 836 (897)
T PRK13800 786 DPDPLVRAAALAALAELGCP---------PDDVAAATAALRAS--AWQVRQGAARALAGAAA 836 (897)
T ss_pred CCCHHHHHHHHHHHHhcCCc---------chhHHHHHHHhcCC--ChHHHHHHHHHHHhccc
Confidence 34466666666666555111 22334455666654 36777888888888875
No 74
>COG4996 Predicted phosphatase [General function prediction only]
Probab=27.82 E-value=28 Score=32.79 Aligned_cols=46 Identities=22% Similarity=0.450 Sum_probs=35.2
Q ss_pred HHHHhcCCCCCCCCCCCCCCceeEc----------------CCCCceeeecCccccHHHHhh
Q 011039 16 EALKLRNVEPVYGFASGGPLRFRRA----------------IGYRDLFYLDDKDVEFKDVIE 61 (495)
Q Consensus 16 ~ALr~~nvEPLyGy~s~~pl~F~~a----------------~g~~~ly~~eDkEVDL~~ii~ 61 (495)
.||+++++...|-|-.-+|.+++.- ..++++.|+||+++-|.+|-+
T Consensus 73 ~aLral~~~~yFhy~ViePhP~K~~ML~~llr~i~~er~~~ikP~~Ivy~DDR~iH~~~Iwe 134 (164)
T COG4996 73 KALRALDLLQYFHYIVIEPHPYKFLMLSQLLREINTERNQKIKPSEIVYLDDRRIHFGNIWE 134 (164)
T ss_pred HHHHHhchhhhEEEEEecCCChhHHHHHHHHHHHHHhhccccCcceEEEEecccccHHHHHH
Confidence 3677778888888887777665432 235789999999999999854
No 75
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are univ
Probab=27.80 E-value=2.2e+02 Score=25.89 Aligned_cols=94 Identities=20% Similarity=0.128 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCchhhhHHHHHHHhh---CHHHHHHhhccChHHHHHhhhHhHhh
Q 011039 238 TAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAAL---GPNVVRLLLLPNLGPYLSLLEPEMLL 314 (495)
Q Consensus 238 AA~lL~~I~~kf~~sy~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aL---G~~aVr~lllP~L~~y~~~Le~~l~~ 314 (495)
++.+|..|++-.-+ ..-.++|++.+.+.|.|..+..-..|=|+.-|..| |++-|-.-+--++..+-.+-+-...+
T Consensus 18 ~~~~m~eIa~~t~~--~~~~~~Im~~l~kRL~~~~k~WR~vyKaL~lleyLl~nGse~vv~~~r~~~~~i~~L~~F~~~d 95 (123)
T cd03571 18 SGTLMAEIARATYN--YVEFQEIMSMLWKRLNDKGKNWRHVYKALTLLEYLLKNGSERVVDDARENLYIIRTLKDFQYID 95 (123)
T ss_pred CHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhCCHHHHHHHHHhHHHHHhhccceeeC
Confidence 35778888775322 25678999999999999999999999999999888 88765555455554444332222222
Q ss_pred hh--hhhhhhhhHHHHHHHHH
Q 011039 315 EK--QKNEVKRHEAWRVYGAL 333 (495)
Q Consensus 315 ~~--~~~~~~r~ea~~v~~aL 333 (495)
+. ..-..+|.-|.+|...|
T Consensus 96 ~~g~d~G~~VR~ka~~i~~Ll 116 (123)
T cd03571 96 ENGKDQGINVREKAKEILELL 116 (123)
T ss_pred CCCCchhHHHHHHHHHHHHHh
Confidence 21 11234677777776655
No 76
>PF07524 Bromo_TP: Bromodomain associated; InterPro: IPR006565 This bromodomain is found in eukaryotic transcription factors and PHD domain containing proteins (IPR001965 from INTERPRO). The tandem PHD finger-bromodomain is found in many chromatin-associated proteins. It is involved in gene silencing by the human co-repressor KRAB-associated protein 1 (KAP1). The tandem PHD finger-bromodomain of KAP1 has a distinct structure that joins the two protein modules. The first helix, alpha(Z), of an atypical bromodomain forms the central hydrophobic core that anchors the other three helices of the bromodomain on one side and the zinc binding PHD finger on the other []. The Rap1 GTPase-activating protein, Sipa1, is modulated by the cellular bromodomain protein, Brd4. Brd4 belongs to the BET family and is a multifunctional protein involved in transcription, replication, the signal transduction pathway, and cell cycle progression. All of these functions are linked to its association with acetylated chromatin. It has tandem bromodomains []. The dysregulation of the Brd4-associated pathways may play an important role in breast cancer progression []. Bovine papillomavirus type 1 E2 also binds to chromosomes in a complex with Brd4. Interaction with Brd4 is additionally important for E2-mediated transcriptional regulation [, ].
Probab=27.59 E-value=38 Score=27.71 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=20.4
Q ss_pred CCCCCCCCChhHHHHHHHhcCC
Q 011039 2 RHSRRTTLTTDDVDEALKLRNV 23 (495)
Q Consensus 2 rHsKR~kLTt~DIn~ALr~~nv 23 (495)
.|+.|+.-+..||..||+-.|+
T Consensus 52 e~~gRt~~~~~Dv~~al~~~gi 73 (77)
T PF07524_consen 52 EHAGRTEPNLQDVEQALEEMGI 73 (77)
T ss_pred HHcCCCCCCHHHHHHHHHHhCC
Confidence 5899999999999999999887
No 77
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=27.50 E-value=4.3e+02 Score=23.32 Aligned_cols=95 Identities=18% Similarity=0.117 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHhCCCCcchHHHHHHHHHHHh-cCCCCCchhhhHHHHHHHhh---CHHHHHHhhccChHHHHHhhhHhHh
Q 011039 238 TAKLVAAICKRYGHVYNTLQTRLTKTLLNAL-LDPKRALTQHYGAVQGLAAL---GPNVVRLLLLPNLGPYLSLLEPEML 313 (495)
Q Consensus 238 AA~lL~~I~~kf~~sy~~L~~RI~~tL~k~l-lDp~k~l~t~YGAI~GL~aL---G~~aVr~lllP~L~~y~~~Le~~l~ 313 (495)
...+|..|++..-+. .-..+|++.+.+.| .+..+.....|=|+.-|..| |++.+..-+--++..+-..-+-...
T Consensus 20 ~~~~l~eIa~~t~~~--~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~~~~~~~I~~l~~f~~~ 97 (125)
T PF01417_consen 20 PGKLLAEIAQLTYNS--KDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDELRDHIDIIRELQDFQYV 97 (125)
T ss_dssp -HHHHHHHHHHTTSC--HHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHHHHHTHHHHHGGGG---B
T ss_pred CHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHhhcceeecc
Confidence 567788887764332 66778999999999 67788888999999998877 8876666554444443333221111
Q ss_pred hh--hhhhhhhhhHHHHHHHHHH
Q 011039 314 LE--KQKNEVKRHEAWRVYGALL 334 (495)
Q Consensus 314 ~~--~~~~~~~r~ea~~v~~aLl 334 (495)
++ ......+|..|.+|...|.
T Consensus 98 d~~g~d~~~~VR~~A~~i~~lL~ 120 (125)
T PF01417_consen 98 DPKGKDQGQNVREKAKEILELLN 120 (125)
T ss_dssp BTTSTBHHHHHHHHHHHHHHHHT
T ss_pred CCCCccHHHHHHHHHHHHHHHhC
Confidence 11 1122346777777776653
No 78
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=26.91 E-value=1.9e+02 Score=25.33 Aligned_cols=73 Identities=12% Similarity=0.185 Sum_probs=47.0
Q ss_pred HHHHHHHhcC--CCCCchhhhHHHHHHHhhCHHHHHHhhccChHHHHHhhhHhHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 011039 261 TKTLLNALLD--PKRALTQHYGAVQGLAALGPNVVRLLLLPNLGPYLSLLEPEMLLEKQKNEVKRHEAWRVYGALLQAAG 338 (495)
Q Consensus 261 ~~tL~k~llD--p~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~aLl~A~g 338 (495)
+..+...+.| .+++...+==++.+|..|=. .....+-+.++.+...|+..+.. +.-|.+|.+|..++++.++
T Consensus 13 l~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~-~~~~~i~~~~pQI~a~L~sal~~-----~~l~~~al~~W~~fi~~L~ 86 (107)
T PF08064_consen 13 LTRFSDVLNDLRGKKPIPEKKRALRSIEELIK-LGGSHISSARPQIMACLQSALEI-----PELREEALSCWNCFIKTLD 86 (107)
T ss_pred HHHHHHHHhccccCCCHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHhCC-----hhhHHHHHHHHHHHHHHCC
Confidence 4455666776 67788777777777776633 34444444566666666666542 2557778888888887654
Q ss_pred H
Q 011039 339 Q 339 (495)
Q Consensus 339 ~ 339 (495)
.
T Consensus 87 ~ 87 (107)
T PF08064_consen 87 E 87 (107)
T ss_pred H
Confidence 3
No 79
>cd05136 RasGAP_DAB2IP The DAB2IP family of Ras GTPase-activating proteins includes DAB2IP, nGAP, and Syn GAP. Disabled 2 interactive protein, (DAB2IP; also known as ASK-interacting protein 1 (AIP1)), is a member of the GTPase-activating proteins, down-regulates Ras-mediated signal pathways, and mediates TNF-induced activation of ASK1-JNK signaling pathways. The mechanism by which TNF signaling is coupled to DAB2IP is not known.
Probab=26.87 E-value=7.2e+02 Score=26.03 Aligned_cols=133 Identities=17% Similarity=0.155 Sum_probs=79.4
Q ss_pred HHHHHHHH---ccCCchHHHHHHH-HhhhcCCCccccchhHHHHHHHhhhcCCCCHHHHHH----HHHHHHHHhcCCCcc
Q 011039 131 FDKITELA---VSRSDSVLFKQAL-VSLATDSGLHPLVPYFTYFVADEVSRGLNNYSLLFA----LMRVVWNLLQNPHIQ 202 (495)
Q Consensus 131 f~kIt~al---l~~~d~~~r~~AL-~sL~tDpGL~qLLPYfv~FI~e~V~~nl~nl~~L~~----llrmv~ALl~N~~L~ 202 (495)
|..+++++ ++.++.+-...+| .-++... ...+++..-|..+|.....+-..+.+ .-||+.+-... .
T Consensus 14 ~~~l~~~l~~~~~~~~~~ela~~Lv~if~~~~---~~~~~l~~Li~~EI~~~~~~~~~lfRgNsl~tK~~~~y~k~---~ 87 (309)
T cd05136 14 YARLCEVLEPVLSVRAKEELACALVHVLQSTG---KAKDFLTDLVMAEVDRCGENERLIFRENTLATKAIEEYLKL---V 87 (309)
T ss_pred HHHHHHHHHhhCCchhHHHHHHHHHHHHHhcC---hHHHHHHHHHHHHHHhccccHHHHHhcCcHHHHHHHHHHHH---h
Confidence 54554443 3322322233344 3444433 44566666667778765434444444 45666666643 2
Q ss_pred cchhhhhhHHHHHHHHhccccCC--CC--------CCcchHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcC
Q 011039 203 IEPYLHQLMPSVVTCLVAKRLGN--RL--------ADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLD 270 (495)
Q Consensus 203 IepYLHqLlPsvLTCll~k~l~~--~~--------~~~hw~LRd~AA~lL~~I~~kf~~sy~~L~~RI~~tL~k~llD 270 (495)
=..||++.+-+++.-++....+- .| ..+.-.||.++..++..|+.....-=.+|+ .|.+.+.+.+.+
T Consensus 88 G~~YL~~~L~p~I~~ii~~~~~~EiDP~k~~~~~l~~n~~~L~~~~~~~~~~I~~S~~~~P~~lR-~i~~~lr~~~~~ 164 (309)
T cd05136 88 GQDYLQDTLGEFIRALYESEENCEVDPSKCSASELPDHQANLRMCCELAWCKIINSHCVFPAELR-EVFASWRERCED 164 (309)
T ss_pred hHHHHHHHHHHHHHHHHcCCCCcccCccccCchhHHHHHHHHHHHHHHHHHHHHHhHHhCCHHHH-HHHHHHHHHHhh
Confidence 38999999999999888754321 11 123457999999999999987655333454 777777777654
No 80
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=26.50 E-value=2.2e+02 Score=24.48 Aligned_cols=59 Identities=19% Similarity=0.120 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCchhhhHHHHHHHhhCHHHH
Q 011039 232 WELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGPNVV 293 (495)
Q Consensus 232 w~LRd~AA~lL~~I~~kf~~sy~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aV 293 (495)
-.+|-.+=..|..++++.+ .-..-.++|+..++..+.|+. -..+..||.||++|+..-=
T Consensus 17 ~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~D--syVYL~aI~~L~~La~~~p 75 (92)
T PF10363_consen 17 PPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDED--SYVYLNAIKGLAALADRHP 75 (92)
T ss_pred cchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCC--chHHHHHHHHHHHHHHHCh
Confidence 4689999999999999887 223456899999999998773 3455699999999976543
No 81
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=26.21 E-value=5.1e+02 Score=26.39 Aligned_cols=119 Identities=12% Similarity=0.107 Sum_probs=66.1
Q ss_pred CchHHHHHHHHhh-------hcCCCccccchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcCCCcccchhhhhhHHHH
Q 011039 142 SDSVLFKQALVSL-------ATDSGLHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHIQIEPYLHQLMPSV 214 (495)
Q Consensus 142 ~d~~~r~~AL~sL-------~tDpGL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~N~~L~IepYLHqLlPsv 214 (495)
+|...|..|+..| ..|.=-.+-+-.++.|+.+ .+.|...+...++-+.||+..+++.-+- ...++-.+
T Consensus 11 ed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~----rl~D~~~~~~~l~gl~~L~~~~~~~~~~-~~~i~~~l 85 (262)
T PF14500_consen 11 EDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCS----RLDDHACVQPALKGLLALVKMKNFSPES-AVKILRSL 85 (262)
T ss_pred CCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHH----HhccHhhHHHHHHHHHHHHhCcCCChhh-HHHHHHHH
Confidence 4555676665443 3333223344555566655 4467777777899999999887754443 33333333
Q ss_pred HHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCC
Q 011039 215 VTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPK 272 (495)
Q Consensus 215 LTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~sy~~L~~RI~~tL~k~llDp~ 272 (495)
...+ -+ ...--.-|...=+++..+..+|.....++-.-.+..+.+..-.++
T Consensus 86 ~~~~----~~---q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEk 136 (262)
T PF14500_consen 86 FQNV----DV---QSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEK 136 (262)
T ss_pred HHhC----Ch---hhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCC
Confidence 3211 10 111224577777777777777765555555556666666554333
No 82
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=25.40 E-value=3.1e+02 Score=32.79 Aligned_cols=99 Identities=20% Similarity=0.227 Sum_probs=69.5
Q ss_pred CcchHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCchhhhHHHHHHHhhCHHHHHHhhccChHHHHHhh
Q 011039 229 DNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGPNVVRLLLLPNLGPYLSLL 308 (495)
Q Consensus 229 ~~hw~LRd~AA~lL~~I~~kf~~sy~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~L 308 (495)
+..=.+|.-.|+..+.+...+|- +.| .-|++++-..+||....--.|.+...++--.=+. ++|||+.+.+-|
T Consensus 487 n~deYVRnttarafavvasalgi--p~l-----lpfLkavc~SkkSwqaRhTgIkivqqIail~Gcs-vlphl~~lv~ii 558 (1172)
T KOG0213|consen 487 NKDEYVRNTTARAFAVVASALGI--PAL-----LPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCS-VLPHLKPLVKII 558 (1172)
T ss_pred cccHHHHHHHHHHHHHHHHHhCc--HHH-----HHHHHHHhccccchhhhchhhHHHHHHHHHhcch-hhhhhHHHHHHH
Confidence 34557999999999999998885 433 3467777767777766555555555544333333 489999999999
Q ss_pred hHhHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 011039 309 EPEMLLEKQKNEVKRHEAWRVYGALLQAAG 338 (495)
Q Consensus 309 e~~l~~~~~~~~~~r~ea~~v~~aLl~A~g 338 (495)
+..+.++ ...+|..+.....+|-.|++
T Consensus 559 ~~gl~De---~qkVR~itAlalsalaeaa~ 585 (1172)
T KOG0213|consen 559 EHGLKDE---QQKVRTITALALSALAEAAT 585 (1172)
T ss_pred HHhhccc---chhhhhHHHHHHHHHHHhcC
Confidence 9888765 34567777777777777664
No 83
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=25.32 E-value=3.3e+02 Score=27.73 Aligned_cols=64 Identities=22% Similarity=0.256 Sum_probs=41.7
Q ss_pred cCCCCCCcchHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCchhhhHHHHHHHhh
Q 011039 223 LGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAAL 288 (495)
Q Consensus 223 l~~~~~~~hw~LRd~AA~lL~~I~~kf~~sy~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aL 288 (495)
+|....++....|..|-.+|+.++.+..... |...=++.+...+.+.-....+.=+|+.||.+|
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~--L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L 67 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDF--LSRQEVQVLLDFFCSRLDDHACVQPALKGLLAL 67 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh--ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHH
Confidence 4444456788999999999999999987532 444444555555544444444555566666655
No 84
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=24.84 E-value=7e+02 Score=26.82 Aligned_cols=91 Identities=12% Similarity=0.176 Sum_probs=55.7
Q ss_pred CCHHHHHHHHHHHHHHhcCCCcccchhhhhhHHHHHHHHhccccCCCC--CCcch---HHHHHHHHHHHHHHHHhCCCCc
Q 011039 180 NNYSLLFALMRVVWNLLQNPHIQIEPYLHQLMPSVVTCLVAKRLGNRL--ADNHW---ELRDFTAKLVAAICKRYGHVYN 254 (495)
Q Consensus 180 ~nl~~L~~llrmv~ALl~N~~L~IepYLHqLlPsvLTCll~k~l~~~~--~~~hw---~LRd~AA~lL~~I~~kf~~sy~ 254 (495)
.|++.+.+++.=.-..++|.+|+...-+.+|.-.+...+-.+...++. ..... ++....-..|+.++..+..--.
T Consensus 154 ~dWeV~s~VL~hLp~qL~Nk~Lf~~~~I~~L~~~Lc~~i~d~~~~~~l~~~p~~~~~~D~~~~~~~~Ls~LisYh~~~~k 233 (356)
T PF03542_consen 154 TDWEVYSYVLVHLPSQLSNKALFLGADIDQLRNALCSMICDRSFLESLSNKPTGFKRADLQVCVFPVLSALISYHSHFSK 233 (356)
T ss_pred CCcHHHHHHHHHHHHHhhhhHHhccCcHHHHHHHHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 466777777777777788888877666666665444443222221111 12333 3444444556666666665556
Q ss_pred chHHHHHHHHHHHhcC
Q 011039 255 TLQTRLTKTLLNALLD 270 (495)
Q Consensus 255 ~L~~RI~~tL~k~llD 270 (495)
+-+..|+++|...+..
T Consensus 234 ~~qd~iV~~l~~GL~s 249 (356)
T PF03542_consen 234 QEQDEIVRALESGLGS 249 (356)
T ss_pred hHHHHHHHHHHHHhcc
Confidence 7788999999988864
No 85
>TIGR02568 LcrE type III secretion regulator YopN/LcrE/InvE/MxiC. This protein is found in type III secretion operons and, in Yersinia is localized to the cell surface and is involved in the Low-Calicium Response (LCR), possibly by sensing the calcium concentration. In Salmonella, the gene is known as InvE and is believed to perform an essential role in the secretion process and interacts with the proteins SipBCD and SicA.//Altered name to reflect regulatory role. Added GO and role IDs. Negative regulation of type III secretion in Y pestis is mediated in part by a multiprotein complex that has been proposed to act as a physical impediment to type III secretion by blocking the entrance to the secretion apparatus prior to contact with mammalian cells. This complex is composed of YopN, its heterodimeric secretion chaperone SycN-YscB, and TyeA. PubMed: 15701523
Probab=24.51 E-value=5.1e+02 Score=25.93 Aligned_cols=46 Identities=17% Similarity=0.268 Sum_probs=24.9
Q ss_pred CHHHHHHHHHHHHHHccCCchHHHHHHHHhhhc-CCCccccchhHHHHHHH
Q 011039 124 SRELQLYFDKITELAVSRSDSVLFKQALVSLAT-DSGLHPLVPYFTYFVAD 173 (495)
Q Consensus 124 SkElQlYf~kIt~all~~~d~~~r~~AL~sL~t-DpGL~qLLPYfv~FI~e 173 (495)
..+...|+++|-+.= -.+..++....|.. ++++.+|+=|+-.|+.+
T Consensus 45 ~~~~~~~~e~~~d~~----~~~k~~~l~~~l~~~~~~~~~ll~~l~~~f~D 91 (240)
T TIGR02568 45 AELLSEYLERVLDAD----ADQKLKELRAELSGQAAGLEQLLALARGAFPD 91 (240)
T ss_pred HHHHHHHHhccCchh----HHHHHHHHHHHHcccCCCHHHHHHHHHhhCCC
Confidence 344555777754321 12344455556655 67777777666555543
No 86
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=24.38 E-value=3.4e+02 Score=32.16 Aligned_cols=143 Identities=20% Similarity=0.214 Sum_probs=85.2
Q ss_pred hcCCCccccchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcCCCcccchhhhhhHHHHHHHHhc--------------
Q 011039 155 ATDSGLHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHIQIEPYLHQLMPSVVTCLVA-------------- 220 (495)
Q Consensus 155 ~tDpGL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~N~~L~IepYLHqLlPsvLTCll~-------------- 220 (495)
..+.++..++|-++....+.......|+.. ........|..+-++-+..+++|.+....-.
T Consensus 430 ~k~~ti~~llp~~~~~l~de~~~V~lnli~-----~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip 504 (759)
T KOG0211|consen 430 PKERTISELLPLLIGNLKDEDPIVRLNLID-----KLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIP 504 (759)
T ss_pred CcCcCccccChhhhhhcchhhHHHHHhhHH-----HHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHH
Confidence 356667777777665554443332222110 1123344455556666666666643322111
Q ss_pred ---cccCCC-------------CCCcchHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCC-CCCchhhhHHHH
Q 011039 221 ---KRLGNR-------------LADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDP-KRALTQHYGAVQ 283 (495)
Q Consensus 221 ---k~l~~~-------------~~~~hw~LRd~AA~lL~~I~~kf~~sy~~L~~RI~~tL~k~llDp-~k~l~t~YGAI~ 283 (495)
.++|-. ..+...++|+.||..+..++.+||..+. ...++..++....++ =+.-.|.+=+|.
T Consensus 505 ~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~--~~~~i~k~L~~~~q~~y~~R~t~l~si~ 582 (759)
T KOG0211|consen 505 QLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWA--RLEEIPKLLAMDLQDNYLVRMTTLFSIH 582 (759)
T ss_pred HHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchh--HHHhhHHHHHHhcCcccchhhHHHHHHH
Confidence 112211 1234568999999999999999996554 445666666666665 334556677888
Q ss_pred HHHhh-CHHHHHHhhccChHHH
Q 011039 284 GLAAL-GPNVVRLLLLPNLGPY 304 (495)
Q Consensus 284 GL~aL-G~~aVr~lllP~L~~y 304 (495)
-|+.+ |.+.....++|-+...
T Consensus 583 ~la~v~g~ei~~~~Llp~~~~l 604 (759)
T KOG0211|consen 583 ELAEVLGQEITCEDLLPVFLDL 604 (759)
T ss_pred HHHHHhccHHHHHHHhHHHHHh
Confidence 77755 9999999888876554
No 87
>COG0588 GpmA Phosphoglycerate mutase 1 [Carbohydrate transport and metabolism]
Probab=23.04 E-value=54 Score=33.06 Aligned_cols=51 Identities=29% Similarity=0.420 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCC-------C---chhhhHHHHHHHh
Q 011039 237 FTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKR-------A---LTQHYGAVQGLAA 287 (495)
Q Consensus 237 ~AA~lL~~I~~kf~~sy~~L~~RI~~tL~k~llDp~k-------~---l~t~YGAI~GL~a 287 (495)
.|+++|..-+-.|.-.|.++-.|-.+|+.-+|-.... + -..||||+.||..
T Consensus 38 ~ag~llk~~~~~~dia~TS~L~RAi~T~~i~L~e~d~~~ipv~kswrLNERhYG~LqGlnK 98 (230)
T COG0588 38 AAGKLLKEEGLEFDIAYTSVLKRAIKTLNIVLEESDQLWIPVIKSWRLNERHYGALQGLNK 98 (230)
T ss_pred HHHHHHHHcCCCcceeehHHHHHHHHHHHHHhhhhcccCcchhhHHHhhhhhhhhhhcCCh
Confidence 5677777777778888999999999999877743322 1 2579999999754
No 88
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=22.84 E-value=1.6e+02 Score=34.15 Aligned_cols=153 Identities=19% Similarity=0.263 Sum_probs=0.0
Q ss_pred HHHHHHhc-CCCcccchhhhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHH
Q 011039 190 RVVWNLLQ-NPHIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGH-VYNTLQTRLTKTLLNA 267 (495)
Q Consensus 190 rmv~ALl~-N~~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~-sy~~L~~RI~~tL~k~ 267 (495)
++.+-|++ ++.+..|-..|.++|.+++-+ .+=+-|+..|..+++.-.. +-...+.||.-.++|.
T Consensus 273 ~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~--------------~~g~a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kL 338 (690)
T KOG1243|consen 273 KFFSGLIDRLDNFPEEIIASKVLPILLAAL--------------EFGDAASDFLTPLFKLGKDLDEEEYQVRIIPVLLKL 338 (690)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHh--------------hccccchhhhhHHHHhhhhccccccccchhhhHHHH
Q ss_pred hcCCCCCchhhhHHHHHHHhhCHHHHHHhhccChHHHHHhhhHhHhhhh----------hhhhhhhhHHHHHHHHHHHHH
Q 011039 268 LLDPKRALTQHYGAVQGLAALGPNVVRLLLLPNLGPYLSLLEPEMLLEK----------QKNEVKRHEAWRVYGALLQAA 337 (495)
Q Consensus 268 llDp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l~~~~----------~~~~~~r~ea~~v~~aLl~A~ 337 (495)
| +.-...||.+||-++..|...|.++..++. ..|...|..+.++.-.|..-+
T Consensus 339 F------------------~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL 400 (690)
T KOG1243|consen 339 F------------------KSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKL 400 (690)
T ss_pred h------------------cCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhh
Q ss_pred HHh-HhhhhccCCCCCCCCccchhccc-----Ccccc--cCcccc
Q 011039 338 GQC-IYDRLKIFPPLSSLPARSVWKTN-----GIVAT--LSNKRK 374 (495)
Q Consensus 338 g~~-~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~--~~~~~~ 374 (495)
+.. +..++-.+-+-.-|-.+.-.||| ||+.+ .|.+|+
T Consensus 401 ~~~~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~ 445 (690)
T KOG1243|consen 401 SKRNLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRK 445 (690)
T ss_pred chhhhcHHHHHHHHhhCccccCcccccceeeecccccccchhhhc
No 89
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=22.81 E-value=6.8e+02 Score=30.09 Aligned_cols=151 Identities=19% Similarity=0.247 Sum_probs=92.0
Q ss_pred CCHHHHHHHHHHHHHHhcCCCcccchhhhhhHHHHHHHHhc---------------------cccCCCC---------CC
Q 011039 180 NNYSLLFALMRVVWNLLQNPHIQIEPYLHQLMPSVVTCLVA---------------------KRLGNRL---------AD 229 (495)
Q Consensus 180 ~nl~~L~~llrmv~ALl~N~~L~IepYLHqLlPsvLTCll~---------------------k~l~~~~---------~~ 229 (495)
.|=++-..++++++-...-..+.-+--=-.++|.++.|--+ .++|..+ .+
T Consensus 648 PDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~R~v~~lkd 727 (1172)
T KOG0213|consen 648 PDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVSRVVLDLKD 727 (1172)
T ss_pred ChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHHHHHHhhhhcc
Confidence 34455566677777776655553332224567766655444 3344332 24
Q ss_pred cchHHHHHHHHHHHHHHHHhCCCC--cchHHHHHHHHHHHhcCCCCCch---hhhHHHHHHHhhCHHHHHHhhccChHHH
Q 011039 230 NHWELRDFTAKLVAAICKRYGHVY--NTLQTRLTKTLLNALLDPKRALT---QHYGAVQGLAALGPNVVRLLLLPNLGPY 304 (495)
Q Consensus 230 ~hw~LRd~AA~lL~~I~~kf~~sy--~~L~~RI~~tL~k~llDp~k~l~---t~YGAI~GL~aLG~~aVr~lllP~L~~y 304 (495)
+.=.-|...+.++..|+.+.+..- ..|-.|+++-++-+|...+..-. .-+|+|+ .+||.. +-|+++.+
T Consensus 728 e~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~--~~lg~r-----~kpylpqi 800 (1172)
T KOG0213|consen 728 EPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVV--NALGGR-----VKPYLPQI 800 (1172)
T ss_pred ccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHH--HHHhhc-----cccchHHH
Confidence 556789999999999998887643 46888899999999986555444 3445443 233332 26888888
Q ss_pred HHhhhHhHhhhhhhhhhhhhHHHHHHHHHHHHHHHh
Q 011039 305 LSLLEPEMLLEKQKNEVKRHEAWRVYGALLQAAGQC 340 (495)
Q Consensus 305 ~~~Le~~l~~~~~~~~~~r~ea~~v~~aLl~A~g~~ 340 (495)
...+--.|.. +...+|..|....+.|-...-+|
T Consensus 801 ~stiL~rLnn---ksa~vRqqaadlis~la~Vlktc 833 (1172)
T KOG0213|consen 801 CSTILWRLNN---KSAKVRQQAADLISSLAKVLKTC 833 (1172)
T ss_pred HHHHHHHhcC---CChhHHHHHHHHHHHHHHHHHhc
Confidence 7766555532 34455666666666555555555
No 90
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=21.27 E-value=1.1e+02 Score=31.75 Aligned_cols=72 Identities=26% Similarity=0.379 Sum_probs=48.0
Q ss_pred HHHHHHHhcCCCCCchhhhHHHHHHHhhCH-HHHHHhh-----------------ccChHH--HHHhhhHhHhhhhhhhh
Q 011039 261 TKTLLNALLDPKRALTQHYGAVQGLAALGP-NVVRLLL-----------------LPNLGP--YLSLLEPEMLLEKQKNE 320 (495)
Q Consensus 261 ~~tL~k~llDp~k~l~t~YGAI~GL~aLG~-~aVr~ll-----------------lP~L~~--y~~~Le~~l~~~~~~~~ 320 (495)
+-.+...++|+++++...|-|+..|...|. ++|..++ +.+|.. -...|...|.+ ...+.
T Consensus 156 v~~lr~~lld~t~~l~~Ry~amF~LRn~g~EeaI~al~~~l~~~SalfrhEvAfVfGQl~s~~ai~~L~k~L~d-~~E~p 234 (289)
T KOG0567|consen 156 VHELRAELLDETKPLFERYRAMFYLRNIGTEEAINALIDGLADDSALFRHEVAFVFGQLQSPAAIPSLIKVLLD-ETEHP 234 (289)
T ss_pred HHHHHHHHHhcchhHHHHHhhhhHhhccCcHHHHHHHHHhcccchHHHHHHHHHHHhhccchhhhHHHHHHHHh-hhcch
Confidence 556778889999999999999999999965 5665443 211111 01122223333 34678
Q ss_pred hhhhHHHHHHHHH
Q 011039 321 VKRHEAWRVYGAL 333 (495)
Q Consensus 321 ~~r~ea~~v~~aL 333 (495)
++|+||..-.|++
T Consensus 235 MVRhEaAeALGaI 247 (289)
T KOG0567|consen 235 MVRHEAAEALGAI 247 (289)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999888876
No 91
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=21.03 E-value=5.6e+02 Score=22.33 Aligned_cols=72 Identities=17% Similarity=0.180 Sum_probs=46.2
Q ss_pred HHHHHhhhc--CCCCHHHHHHHHHHHHHHhcCCCcccchhhhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHH
Q 011039 169 YFVADEVSR--GLNNYSLLFALMRVVWNLLQNPHIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAIC 246 (495)
Q Consensus 169 ~FI~e~V~~--nl~nl~~L~~llrmv~ALl~N~~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~ 246 (495)
+++++.+.. .-.....-...++-+..|+. -...|+....|=+++|+-+- +.. + +||+.|-++-...+
T Consensus 14 ~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~----~~~~~i~~~~pQI~a~L~sa-l~~----~--~l~~~al~~W~~fi 82 (107)
T PF08064_consen 14 TRFSDVLNDLRGKKPIPEKKRALRSIEELIK----LGGSHISSARPQIMACLQSA-LEI----P--ELREEALSCWNCFI 82 (107)
T ss_pred HHHHHHHhccccCCCHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHH-hCC----h--hhHHHHHHHHHHHH
Confidence 444444444 22344555555666666665 26788888888899998653 111 1 89999988888888
Q ss_pred HHhCC
Q 011039 247 KRYGH 251 (495)
Q Consensus 247 ~kf~~ 251 (495)
+..+.
T Consensus 83 ~~L~~ 87 (107)
T PF08064_consen 83 KTLDE 87 (107)
T ss_pred HHCCH
Confidence 77664
No 92
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=21.03 E-value=5.2e+02 Score=30.81 Aligned_cols=21 Identities=10% Similarity=0.059 Sum_probs=10.3
Q ss_pred HHHHHccCCchHHHHHHHHhhh
Q 011039 134 ITELAVSRSDSVLFKQALVSLA 155 (495)
Q Consensus 134 It~all~~~d~~~r~~AL~sL~ 155 (495)
+..+ +..++...|..|...|.
T Consensus 747 l~~~-l~D~~~~VR~~aa~aL~ 767 (897)
T PRK13800 747 VAGA-ATDENREVRIAVAKGLA 767 (897)
T ss_pred HHHH-hcCCCHHHHHHHHHHHH
Confidence 4444 44445566665444443
No 93
>smart00147 RasGEF Guanine nucleotide exchange factor for Ras-like small GTPases.
Probab=20.95 E-value=4e+02 Score=25.97 Aligned_cols=71 Identities=20% Similarity=0.325 Sum_probs=44.8
Q ss_pred cCCHHHHHHHHHHHHHHccCCchHHHHHHHHhhhcCCCccccchhHHHHHHHhhhc----------CCCCHHHHHHHHHH
Q 011039 122 ILSRELQLYFDKITELAVSRSDSVLFKQALVSLATDSGLHPLVPYFTYFVADEVSR----------GLNNYSLLFALMRV 191 (495)
Q Consensus 122 ~LSkElQlYf~kIt~all~~~d~~~r~~AL~sL~tDpGL~qLLPYfv~FI~e~V~~----------nl~nl~~L~~llrm 191 (495)
.|+.+....|+++.+.+-...+-...++++++... .+.+||+--|+.+-+.. .+-|+..+..+.++
T Consensus 118 ~l~~~~~~~~~~L~~l~s~~~n~~~yR~~l~~~~~----~p~IP~lg~~l~dl~~~~~~~~~~~~~~~iNf~k~~~i~~~ 193 (242)
T smart00147 118 KLPSKYKKLFEELEELLSPERNFKNYREALSSCNL----PPCVPFLGVLLKDLTFIDEGNPDFLENGLVNFEKRRKIAEI 193 (242)
T ss_pred HCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC----CCCccchHHHHHHHHHHHccCcccccCCcccHHHHHHHHHH
Confidence 47888899999988775432222334456655532 68999998887764321 22366676666666
Q ss_pred HHHHh
Q 011039 192 VWNLL 196 (495)
Q Consensus 192 v~ALl 196 (495)
++.+.
T Consensus 194 i~~~~ 198 (242)
T smart00147 194 LREIR 198 (242)
T ss_pred HHHHH
Confidence 65554
No 94
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=20.81 E-value=2.9e+02 Score=21.55 Aligned_cols=38 Identities=21% Similarity=0.320 Sum_probs=27.4
Q ss_pred chHHHHHHHHHHHHHHHHh-C--------CCCcchHHHHHHHHHHHh
Q 011039 231 HWELRDFTAKLVAAICKRY-G--------HVYNTLQTRLTKTLLNAL 268 (495)
Q Consensus 231 hw~LRd~AA~lL~~I~~kf-~--------~sy~~L~~RI~~tL~k~l 268 (495)
+-.+|.+|+.+|...++++ . .--..-|..|-..++..+
T Consensus 29 ~~~~R~~A~i~LKn~I~~~W~~~~~~~~~~~~~~~k~~Ik~~ll~~l 75 (77)
T PF03810_consen 29 DPEVRQLAAILLKNLIKKNWSPSKQKGWSQLPEEEKEQIKSQLLQLL 75 (77)
T ss_dssp CHHHHHHHHHHHHHHHHHSGGHHHHHHHHGSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCchhhccCCCCCCHHHHHHHHHHHHHHH
Confidence 4589999999999998887 5 444556666666665554
No 95
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.51 E-value=1.5e+03 Score=27.15 Aligned_cols=144 Identities=17% Similarity=0.314 Sum_probs=85.1
Q ss_pred cCCCccccchhHHHHHHHhhhc------CCCCHHH--HHHHHHHHHHHhcCCCcccchhhhhhHHHHHH----HHhcccc
Q 011039 156 TDSGLHPLVPYFTYFVADEVSR------GLNNYSL--LFALMRVVWNLLQNPHIQIEPYLHQLMPSVVT----CLVAKRL 223 (495)
Q Consensus 156 tDpGL~qLLPYfv~FI~e~V~~------nl~nl~~--L~~llrmv~ALl~N~~L~IepYLHqLlPsvLT----Cll~k~l 223 (495)
+.+.-.+.-|||-.-|..-+.. |-+|+.. ...||.+| .|-.-..-+-+.++.+-++. |+=+..+
T Consensus 485 s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElI----k~st~~vy~~v~~~~l~il~kl~q~i~~~~l 560 (859)
T KOG1241|consen 485 SNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELI----KNSTDDVYPMVQKLTLVILEKLDQTISSQIL 560 (859)
T ss_pred CCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHH----HcCcHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3323334446665555443322 3344433 22355554 45444444444555554444 3333334
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCch---hhhHHHHHHHhh-CHHHHHHhhcc
Q 011039 224 GNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALT---QHYGAVQGLAAL-GPNVVRLLLLP 299 (495)
Q Consensus 224 ~~~~~~~hw~LRd~AA~lL~~I~~kf~~sy~~L~~RI~~tL~k~llDp~k~l~---t~YGAI~GL~aL-G~~aVr~lllP 299 (495)
+....+.+-.|.+.=...|..|.+|+++.....--.|+..|++.|-. .++-. .-+|||.+|.+. |.
T Consensus 561 ~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s-~~s~~v~e~a~laV~tl~~~Lg~--------- 630 (859)
T KOG1241|consen 561 SLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFES-KRSAVVHEEAFLAVSTLAESLGK--------- 630 (859)
T ss_pred cHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcC-CccccchHHHHHHHHHHHHHHhH---------
Confidence 33333566677888888899999999999999999999999999976 45544 447788777643 54
Q ss_pred ChHHHHHhhhHhHh
Q 011039 300 NLGPYLSLLEPEML 313 (495)
Q Consensus 300 ~L~~y~~~Le~~l~ 313 (495)
++..|...+.|.|.
T Consensus 631 ~F~kym~~f~pyL~ 644 (859)
T KOG1241|consen 631 GFAKYMPAFKPYLL 644 (859)
T ss_pred hHHHHHHHHHHHHH
Confidence 44555555555554
No 96
>TIGR03233 DNA_S_dndB DNA sulfur modification protein DndB. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=20.38 E-value=47 Score=35.53 Aligned_cols=110 Identities=21% Similarity=0.149 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCC---CCchhhhHHHHHHHhhC-HHHHHHhhccChHHHHHhhhH
Q 011039 235 RDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPK---RALTQHYGAVQGLAALG-PNVVRLLLLPNLGPYLSLLEP 310 (495)
Q Consensus 235 Rd~AA~lL~~I~~kf~~sy~~L~~RI~~tL~k~llDp~---k~l~t~YGAI~GL~aLG-~~aVr~lllP~L~~y~~~Le~ 310 (495)
||-.|.+...|+.+..-- + .++..=.+.+-..+ -++.+.|.|.+.|..-+ .+.+... .-.+..||..+-.
T Consensus 171 rd~~a~~tr~l~~~~~~F----~-~~te~ek~sls~~s~klfTls~i~~a~~~ll~~~~~~~~~e~-~~~~~~fw~~~~~ 244 (355)
T TIGR03233 171 RDDLALLTKEIIERSEIF----K-KLVEMEKSNLSKRSRKLFTLSALYKANKYLLGKRGKDNITEA-IQFAFEFWEAVCS 244 (355)
T ss_pred CcHHHHHHHHHHHhchHh----h-hhHHHhcCCcCCCCCceEEHHHHHHHHHHHhcCCCcchhHHH-HHHHHHHHHHHHH
Confidence 778888888887764321 1 22222222221111 14778899888887443 2323222 4456677766654
Q ss_pred hHhh-----h-hhhhhhhhhHHHHHHHHHHHHHHHhHhhhhccCCC
Q 011039 311 EMLL-----E-KQKNEVKRHEAWRVYGALLQAAGQCIYDRLKIFPP 350 (495)
Q Consensus 311 ~l~~-----~-~~~~~~~r~ea~~v~~aLl~A~g~~~~~~~~~~~~ 350 (495)
.+.. + ......-|.+.-+..|..|.|+|...++-++..|.
T Consensus 245 ~~~~w~~v~~~~~s~~e~R~~~I~~h~V~L~alG~~g~~l~~~~~~ 290 (355)
T TIGR03233 245 NMPEWQLVREKRLSAGELRRDFIHAHGIALHALGLVGKDLLRNFPK 290 (355)
T ss_pred hChHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH
Confidence 4422 1 12224568888899999999999999999988865
Done!