Query 011039
Match_columns 495
No_of_seqs 155 out of 231
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 19:32:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011039.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011039hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4atg_A TAF6; transcription, TF 100.0 6.9E-60 2.4E-64 450.4 19.7 182 120-311 2-183 (196)
2 2hue_C Histone H4; mini beta s 97.9 1.3E-06 4.5E-11 72.5 -1.0 30 1-31 55-84 (84)
3 1ibr_B P95, importin beta-1 su 97.6 0.0014 4.8E-08 65.4 16.9 128 202-339 314-441 (462)
4 4fdd_A Transportin-1; heat rep 97.5 0.0019 6.3E-08 71.5 16.2 147 181-336 269-430 (852)
5 2bpt_A Importin beta-1 subunit 97.2 0.0079 2.7E-07 65.2 16.6 126 202-337 317-442 (861)
6 1qgr_A Protein (importin beta 97.1 0.0027 9.2E-08 69.1 12.7 178 146-338 344-540 (876)
7 2bpt_A Importin beta-1 subunit 97.0 0.0051 1.7E-07 66.8 13.7 179 145-339 346-533 (861)
8 2qk2_A LP04448P; mini spindles 97.0 0.0068 2.3E-07 56.8 12.9 129 185-340 78-210 (242)
9 2qk1_A Protein STU2; STU2P, XM 96.9 0.013 4.3E-07 56.5 13.9 184 142-340 28-225 (249)
10 4fdd_A Transportin-1; heat rep 96.8 0.015 5.2E-07 64.2 15.5 149 150-313 344-493 (852)
11 1qgr_A Protein (importin beta 96.7 0.027 9.4E-07 61.1 16.0 119 185-312 625-743 (876)
12 2qk2_A LP04448P; mini spindles 96.4 0.021 7.3E-07 53.4 11.2 106 130-251 99-209 (242)
13 1u6g_C TIP120 protein, CAND1; 95.7 0.27 9.3E-06 56.5 17.9 117 183-309 492-616 (1230)
14 1ibr_B P95, importin beta-1 su 95.3 0.59 2E-05 46.3 16.8 188 130-342 173-395 (462)
15 1b3u_A Protein (protein phosph 95.2 0.083 2.8E-06 54.3 10.5 112 208-338 440-551 (588)
16 1b3u_A Protein (protein phosph 95.2 0.33 1.1E-05 49.8 15.1 108 207-337 162-273 (588)
17 1u6g_C TIP120 protein, CAND1; 94.8 0.41 1.4E-05 55.0 16.0 188 131-338 8-207 (1230)
18 2qk1_A Protein STU2; STU2P, XM 92.5 1.4 4.7E-05 42.2 12.6 144 130-288 61-218 (249)
19 2x1g_F Cadmus; transport prote 91.3 1.7 5.9E-05 48.6 13.5 148 150-313 444-594 (971)
20 4db8_A Armadillo-repeat protei 90.9 0.49 1.7E-05 43.4 7.2 141 131-289 14-166 (252)
21 4ffb_C Protein STU2; tubulin f 90.4 2.6 9E-05 40.2 12.1 153 180-348 67-225 (278)
22 2x19_B Importin-13; nuclear tr 89.6 1.6 5.6E-05 48.4 11.3 136 162-313 441-578 (963)
23 2of3_A ZYG-9; multifunctional 89.4 8.7 0.0003 37.8 15.2 142 180-346 99-247 (266)
24 4db6_A Armadillo repeat protei 89.2 2.3 7.7E-05 37.8 10.0 141 130-288 13-165 (210)
25 2vgl_B AP-2 complex subunit be 88.9 1.8 6.1E-05 46.2 10.5 159 144-342 332-493 (591)
26 4hxt_A De novo protein OR329; 88.8 1.5 5.3E-05 39.5 8.7 111 162-289 44-156 (252)
27 3ltj_A Alpharep-4; protein eng 88.2 10 0.00035 33.4 13.6 29 142-171 26-54 (201)
28 4ffb_C Protein STU2; tubulin f 88.0 4.2 0.00014 38.7 11.6 126 133-269 106-242 (278)
29 1oyz_A Hypothetical protein YI 87.3 15 0.00051 34.2 14.8 132 133-291 27-158 (280)
30 1wa5_C Importin alpha RE-expor 87.1 4.3 0.00015 45.6 12.7 148 150-313 384-558 (960)
31 3ltm_A Alpha-REP4; protein eng 86.9 11 0.00038 33.5 13.1 50 229-290 123-172 (211)
32 1wa5_B Importin alpha subunit; 86.4 4.3 0.00015 41.9 11.4 111 162-289 215-327 (530)
33 1oyz_A Hypothetical protein YI 86.3 14 0.00048 34.4 14.0 131 131-289 56-187 (280)
34 1wa5_B Importin alpha subunit; 86.3 8 0.00027 39.9 13.4 111 161-288 172-284 (530)
35 2x19_B Importin-13; nuclear tr 86.1 6.2 0.00021 43.8 13.1 88 186-289 511-602 (963)
36 2jdq_A Importin alpha-1 subuni 85.9 6.9 0.00023 38.6 12.1 139 134-289 154-304 (450)
37 4hat_C Exportin-1; heat repeat 85.7 3.1 0.00011 48.0 10.8 144 162-312 447-598 (1023)
38 1w63_A Adapter-related protein 85.3 11 0.00038 40.4 14.3 139 130-292 351-492 (618)
39 3ltj_A Alpharep-4; protein eng 85.1 16 0.00053 32.2 13.1 123 131-292 47-169 (201)
40 2jdq_A Importin alpha-1 subuni 85.0 7.3 0.00025 38.4 11.9 139 133-289 111-262 (450)
41 4hxt_A De novo protein OR329; 83.7 3.4 0.00012 37.2 8.1 141 131-289 46-198 (252)
42 4db8_A Armadillo-repeat protei 83.6 2 6.7E-05 39.3 6.5 109 163-288 97-207 (252)
43 1wa5_C Importin alpha RE-expor 83.2 3 0.0001 46.9 9.1 104 182-288 306-432 (960)
44 3ltm_A Alpha-REP4; protein eng 82.7 19 0.00063 32.0 12.6 122 131-291 21-142 (211)
45 3m1i_C Exportin-1; heat repeat 80.8 20 0.00069 40.7 14.8 124 160-288 338-480 (1049)
46 1xqr_A HSPBP1 protein; armadil 80.4 36 0.0012 33.3 14.7 159 162-343 124-288 (296)
47 1vsy_5 Proteasome activator BL 79.4 1.1 3.9E-05 51.7 3.9 98 180-288 814-922 (997)
48 2vgl_B AP-2 complex subunit be 78.9 14 0.00047 39.3 12.0 75 204-291 116-190 (591)
49 2x1g_F Cadmus; transport prote 78.4 8.8 0.0003 42.9 10.6 86 184-286 526-614 (971)
50 4b8j_A Importin subunit alpha- 78.1 14 0.00046 38.0 11.3 143 131-289 119-272 (528)
51 1f1e_A Histone fold protein; a 77.6 1.1 3.7E-05 41.1 2.5 25 2-26 51-75 (154)
52 4b8j_A Importin subunit alpha- 77.5 14 0.00049 37.8 11.2 152 161-335 243-400 (528)
53 2iw3_A Elongation factor 3A; a 73.5 70 0.0024 37.0 16.5 126 150-291 37-164 (986)
54 3m1i_C Exportin-1; heat repeat 70.3 42 0.0014 38.1 13.7 143 162-313 447-599 (1049)
55 2vgl_A Adaptor protein complex 69.7 51 0.0017 35.5 13.6 77 204-291 141-217 (621)
56 3b0c_T CENP-T, centromere prot 66.5 1.7 5.8E-05 37.5 1.0 21 2-22 53-73 (111)
57 2vgl_A Adaptor protein complex 66.5 55 0.0019 35.2 13.1 179 127-341 366-549 (621)
58 3nqj_A Histone H3-like centrom 64.0 2.8 9.7E-05 34.5 1.8 24 2-25 56-79 (82)
59 4db6_A Armadillo repeat protei 62.8 18 0.00062 31.8 7.1 140 132-289 57-208 (210)
60 3u0r_A Apoptosis inhibitor 5; 62.4 1.6E+02 0.0055 31.6 15.2 144 114-268 161-321 (507)
61 1taf_A TFIID TBP associated fa 56.8 4.2 0.00014 32.3 1.5 20 2-21 47-66 (68)
62 4hat_C Exportin-1; heat repeat 56.6 96 0.0033 35.7 13.4 90 187-290 523-622 (1023)
63 1n1j_A NF-YB; histone-like PAI 55.6 5.3 0.00018 32.9 2.1 22 2-23 56-77 (93)
64 2z6h_A Catenin beta-1, beta-ca 55.5 60 0.0021 34.4 10.8 116 142-271 26-152 (644)
65 3a6p_A Exportin-5; exportin-5, 55.4 1.4E+02 0.0048 34.8 14.7 89 156-250 345-455 (1204)
66 2z6g_A B-catenin; FULL-length, 54.5 53 0.0018 36.2 10.5 98 181-289 373-471 (780)
67 3gs3_A Symplekin, LD45768P; he 54.2 1.6E+02 0.0055 28.5 14.5 100 230-335 65-173 (257)
68 3ibv_A Exportin-T; karyopherin 50.9 61 0.0021 37.1 10.5 96 162-269 486-588 (980)
69 2z6g_A B-catenin; FULL-length, 47.9 52 0.0018 36.3 9.1 123 134-271 155-288 (780)
70 3v9r_A MHF1, uncharacterized p 47.6 3.8 0.00013 34.3 -0.0 19 2-20 61-79 (90)
71 1jdh_A Beta-catenin; beta-cate 46.9 80 0.0027 31.6 9.7 126 131-271 19-155 (529)
72 3b0b_B CENP-S, centromere prot 46.2 4.2 0.00014 35.1 -0.0 19 2-20 68-86 (107)
73 3gjx_A Exportin-1; transport, 45.5 89 0.003 36.4 10.8 117 229-345 577-712 (1073)
74 3opb_A SWI5-dependent HO expre 43.9 2E+02 0.007 32.4 13.0 142 181-335 470-635 (778)
75 3ul1_B Importin subunit alpha- 42.5 3E+02 0.01 28.2 15.8 102 131-247 59-172 (510)
76 2z6h_A Catenin beta-1, beta-ca 41.7 1.5E+02 0.0051 31.3 11.2 98 181-289 237-335 (644)
77 1te4_A Conserved protein MTH18 40.5 16 0.00053 30.5 2.7 50 229-290 53-102 (131)
78 3b0c_W CENP-W, centromere prot 38.5 8.6 0.0003 30.6 0.7 20 2-21 51-70 (76)
79 4dra_A Centromere protein S; D 37.8 6.8 0.00023 34.1 -0.0 19 2-20 76-94 (113)
80 3o2t_A Symplekin; heat repeat, 36.9 3.7E+02 0.013 27.7 14.6 114 207-335 61-183 (386)
81 3oc3_A Helicase MOT1, MOT1; re 36.1 58 0.002 36.2 6.8 133 214-368 222-365 (800)
82 3vh5_A CENP-S; histone fold, c 35.6 9.2 0.00031 34.5 0.5 19 2-20 68-86 (140)
83 3a6p_A Exportin-5; exportin-5, 33.8 4.2E+02 0.014 30.8 14.1 136 185-336 510-655 (1204)
84 4ady_A RPN2, 26S proteasome re 33.6 1.4E+02 0.0047 34.6 9.7 75 229-312 623-697 (963)
85 3ibv_A Exportin-T; karyopherin 31.8 1.5E+02 0.0052 33.8 9.8 125 181-313 456-588 (980)
86 3now_A UNC-45 protein, SD10334 29.9 1.9E+02 0.0066 32.6 10.0 98 181-288 508-608 (810)
87 2db0_A 253AA long hypothetical 29.2 3.7E+02 0.013 25.8 10.3 82 233-328 122-203 (253)
88 1te4_A Conserved protein MTH18 27.1 80 0.0027 26.0 5.0 57 210-287 74-130 (131)
89 3tjz_B Coatomer subunit gamma; 27.1 86 0.0029 31.8 6.1 144 124-290 133-279 (355)
90 4ady_A RPN2, 26S proteasome re 26.3 3E+02 0.01 31.9 10.8 64 229-292 658-723 (963)
91 2byk_B Chrac-14; nucleosome sl 25.3 30 0.001 30.3 2.0 23 2-24 57-79 (128)
92 1jfi_B DR1 protein, transcript 23.1 26 0.00091 32.7 1.2 23 2-24 62-84 (179)
93 1vdy_A Hypothetical protein (R 22.8 1.5E+02 0.005 26.4 6.0 92 240-333 30-128 (140)
94 3tpo_A Importin subunit alpha- 21.7 6.5E+02 0.022 25.6 15.2 102 131-247 78-191 (529)
95 3tjz_B Coatomer subunit gamma; 21.0 6.4E+02 0.022 25.3 13.3 144 125-296 64-214 (355)
96 2db0_A 253AA long hypothetical 20.1 1.3E+02 0.0046 28.9 5.3 70 228-301 42-112 (253)
No 1
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=100.00 E-value=6.9e-60 Score=450.40 Aligned_cols=182 Identities=34% Similarity=0.619 Sum_probs=177.2
Q ss_pred cccCCHHHHHHHHHHHHHHccCCchHHHHHHHHhhhcCCCccccchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcCC
Q 011039 120 KHILSRELQLYFDKITELAVSRSDSVLFKQALVSLATDSGLHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNP 199 (495)
Q Consensus 120 kh~LSkElQlYf~kIt~all~~~d~~~r~~AL~sL~tDpGL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~N~ 199 (495)
||+||+|+|+||++||++|++ ..|++||++|++|||||||+|||++||+++|++|++|+..|.++|+|++||++||
T Consensus 2 kh~LS~Elq~yf~~It~a~~~----~~r~~aL~sL~~D~gL~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~ 77 (196)
T 4atg_A 2 SHMLPKELQLYFDKILSMIKS----DMKDIAIECLEKESGLQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNK 77 (196)
T ss_dssp GGGSCHHHHHHHHHHHHHHTS----TTHHHHHHHHHHCSSCTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCT
T ss_pred CcccCHHHHHHHHHHHHHHHh----HHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCC
Confidence 799999999999999999997 3689999999999999999999999999999999999999999999999999999
Q ss_pred CcccchhhhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCchhhh
Q 011039 200 HIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHY 279 (495)
Q Consensus 200 ~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~sy~~L~~RI~~tL~k~llDp~k~l~t~Y 279 (495)
+|+||||+|||||++|||+|++++|++ +|||+||++|+.||++|+++|++|++||+++|.|+|+||++|+++||
T Consensus 78 ~l~lepYlH~LipsvLtCll~k~l~~~------~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~Y 151 (196)
T 4atg_A 78 HVFIDPYLHQILPSLLTCVIGKSIVDD------DVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQY 151 (196)
T ss_dssp TCCCGGGHHHHHHHHHHHHHCTTCCCH------HHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHhcccCHH------HHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHH
Confidence 999999999999999999999999885 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCHHHHHHhhccChHHHHHhhhHh
Q 011039 280 GAVQGLAALGPNVVRLLLLPNLGPYLSLLEPE 311 (495)
Q Consensus 280 GAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~ 311 (495)
|||+||++||++|||.+|+|+++.|++.++..
T Consensus 152 GAi~GL~~lG~~~vr~~llP~l~~~~~~~~~~ 183 (196)
T 4atg_A 152 GALYCLSILSKNVVNTVIREHAEEYKRTIGKK 183 (196)
T ss_dssp HHHHHHHHHCHHHHHTHHHHHHHHHHHHTCCH
T ss_pred HHHHHHHHhHHHHHHHhhhcCHHHHHHHHHHH
Confidence 99999999999999999999999999888744
No 2
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=97.87 E-value=1.3e-06 Score=72.54 Aligned_cols=30 Identities=40% Similarity=0.614 Sum_probs=27.1
Q ss_pred CCCCCCCCCChhHHHHHHHhcCCCCCCCCCC
Q 011039 1 MRHSRRTTLTTDDVDEALKLRNVEPVYGFAS 31 (495)
Q Consensus 1 MrHsKR~kLTt~DIn~ALr~~nvEPLyGy~s 31 (495)
|+|+||+++|++||..||+.++ +|+|||.+
T Consensus 55 a~ha~RKTvt~~DV~~Alk~~g-~~lYgf~~ 84 (84)
T 2hue_C 55 TEHAKRKTVTAMDVVYALKRQG-RTLYGFGG 84 (84)
T ss_dssp HHHTTCSEECHHHHHHHTTTTC-EEEESCC-
T ss_pred HHHcCCCcCcHHHHHHHHHHcC-CCCCCCCC
Confidence 5899999999999999999885 89999974
No 3
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=97.65 E-value=0.0014 Score=65.45 Aligned_cols=128 Identities=13% Similarity=0.082 Sum_probs=90.4
Q ss_pred ccchhhhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCchhhhHH
Q 011039 202 QIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGA 281 (495)
Q Consensus 202 ~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~sy~~L~~RI~~tL~k~llDp~k~l~t~YGA 281 (495)
++++|+..++|.++.++.... ....++.|..|..|+.+|..++..++. .+-+.++..+...|.| .....+++|
T Consensus 314 ~~~~~~~~l~p~l~~~l~~~d--~d~~~~~~~~r~~a~~~L~~l~~~~~~---~~~~~~~~~l~~~l~~--~~~~~r~aa 386 (462)
T 1ibr_B 314 YAKGALQYLVPILTQTLTKQD--ENDDDDDWNPCKAAGVCLMLLATCCED---DIVPHVLPFIKEHIKN--PDWRYRDAA 386 (462)
T ss_dssp HHHHHHHHHHHHHHHHTTCCC--SSCCTTCCSHHHHHHHHHHHHHHHTTT---THHHHHHHHHHHHTTC--SSHHHHHHH
T ss_pred HHHHHhhhccHHHHHHHHhcc--cccccccchHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHHhcC--CChHHHHHH
Confidence 456788999998887764321 112357899999999999999999984 5667788888777765 467889999
Q ss_pred HHHHHhhCHHHHHHhhccChHHHHHhhhHhHhhhhhhhhhhhhHHHHHHHHHHHHHHH
Q 011039 282 VQGLAALGPNVVRLLLLPNLGPYLSLLEPEMLLEKQKNEVKRHEAWRVYGALLQAAGQ 339 (495)
Q Consensus 282 I~GL~aLG~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~aLl~A~g~ 339 (495)
+.+|.+++...-...+-|+++.+...|-+.+.+ .+..+|..|..+.+.+....+.
T Consensus 387 l~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d---~~~~Vr~~a~~~l~~~~~~~~~ 441 (462)
T 1ibr_B 387 VMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD---PSVVVRDTAAWTVGRICELLPE 441 (462)
T ss_dssp HHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGC---SCHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHhccc
Confidence 999999965222133456667777666666643 2456777777777777665543
No 4
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=97.46 E-value=0.0019 Score=71.51 Aligned_cols=147 Identities=14% Similarity=0.193 Sum_probs=98.8
Q ss_pred CHHHHHHHHHHHHHHhcCCCc--ccchhhhhhHHHHHHHHhccc---------cCCCCCC----cchHHHHHHHHHHHHH
Q 011039 181 NYSLLFALMRVVWNLLQNPHI--QIEPYLHQLMPSVVTCLVAKR---------LGNRLAD----NHWELRDFTAKLVAAI 245 (495)
Q Consensus 181 nl~~L~~llrmv~ALl~N~~L--~IepYLHqLlPsvLTCll~k~---------l~~~~~~----~hw~LRd~AA~lL~~I 245 (495)
+-..-...+....++..++.+ .+.+|+..++|.++.++.... ......+ ..|.+|..|+..|..+
T Consensus 269 ~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~l 348 (852)
T 4fdd_A 269 DENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVL 348 (852)
T ss_dssp SHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHH
Confidence 334444456666677766543 478999999999998874211 1011111 5899999999999999
Q ss_pred HHHhCCCCcchHHHHHHHHHHHhcCCCCCchhhhHHHHHHHhhCHHHHHHhhccChHHHHHhhhHhHhhhhhhhhhhhhH
Q 011039 246 CKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGPNVVRLLLLPNLGPYLSLLEPEMLLEKQKNEVKRHE 325 (495)
Q Consensus 246 ~~kf~~sy~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~e 325 (495)
+..++. .+-+.++..+...+.|+ ....+.+|+.+|..+....-. .+-|+++.++..|-+.+.+ .+..+|..
T Consensus 349 a~~~~~---~~~~~l~~~l~~~l~~~--~~~~R~aa~~alg~i~~~~~~-~~~~~l~~~l~~l~~~l~d---~~~~Vr~~ 419 (852)
T 4fdd_A 349 ANVYRD---ELLPHILPLLKELLFHH--EWVVKESGILVLGAIAEGCMQ-GMIPYLPELIPHLIQCLSD---KKALVRSI 419 (852)
T ss_dssp HHHHGG---GGHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHTTTTTHH-HHGGGHHHHHHHHHHHTTC---SSHHHHHH
T ss_pred HHhccH---HHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhcchH-HHHHHHHHHHHHHHHHcCC---CCHHHHHH
Confidence 999873 46778888888888764 588899999999999654333 3347777777776666643 24455665
Q ss_pred HHHHHHHHHHH
Q 011039 326 AWRVYGALLQA 336 (495)
Q Consensus 326 a~~v~~aLl~A 336 (495)
|..+.|.+-..
T Consensus 420 a~~~l~~l~~~ 430 (852)
T 4fdd_A 420 TCWTLSRYAHW 430 (852)
T ss_dssp HHHHHHHTHHH
T ss_pred HHHHHHHHHHH
Confidence 55555544443
No 5
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=97.16 E-value=0.0079 Score=65.24 Aligned_cols=126 Identities=8% Similarity=0.097 Sum_probs=83.5
Q ss_pred ccchhhhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCchhhhHH
Q 011039 202 QIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGA 281 (495)
Q Consensus 202 ~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~sy~~L~~RI~~tL~k~llDp~k~l~t~YGA 281 (495)
++.+|+..++|.++.++-... ....++.|.+|..|+.+|..++..++. .+-+.++..+...+.|+ ....+.+|
T Consensus 317 ~~~~~~~~il~~ll~~l~~~~--~d~~d~~~~~r~~a~~~L~~l~~~~~~---~~~~~l~~~l~~~l~~~--~~~~r~~a 389 (861)
T 2bpt_A 317 FALSSIKDVVPNLLNLLTRQN--EDPEDDDWNVSMSAGACLQLFAQNCGN---HILEPVLEFVEQNITAD--NWRNREAA 389 (861)
T ss_dssp HHHHHHHHHHHHHHHHTTCCC--CC-CCCCCHHHHHHHHHHHHHHHHHGG---GGHHHHHHHHHHHTTCS--SHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcc--cccccccCcHHHHHHHHHHHHHHHccH---hHHHHHHHHHHHHcCCC--ChhHHHHH
Confidence 346788889998888764321 112356799999999999999999983 45677888888887654 47789999
Q ss_pred HHHHHhhCHHHHHHhhccChHHHHHhhhHhHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 011039 282 VQGLAALGPNVVRLLLLPNLGPYLSLLEPEMLLEKQKNEVKRHEAWRVYGALLQAA 337 (495)
Q Consensus 282 I~GL~aLG~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~aLl~A~ 337 (495)
+.+|..++...-...+.|+++.+...|...+.+ .+..+|..|..+.|.+...+
T Consensus 390 ~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d---~~~~vr~~a~~~l~~l~~~~ 442 (861)
T 2bpt_A 390 VMAFGSIMDGPDKVQRTYYVHQALPSILNLMND---QSLQVKETTAWCIGRIADSV 442 (861)
T ss_dssp HHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGC---SCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCC---CcHHHHHHHHHHHHHHHHHh
Confidence 999999863221122345555555555544432 24555666655555555443
No 6
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=97.14 E-value=0.0027 Score=69.08 Aligned_cols=178 Identities=18% Similarity=0.219 Sum_probs=115.9
Q ss_pred HHHHH---HHhhhcCCCccccchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcCCC-cccchhhhhhHHHHHHHHhcc
Q 011039 146 LFKQA---LVSLATDSGLHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPH-IQIEPYLHQLMPSVVTCLVAK 221 (495)
Q Consensus 146 ~r~~A---L~sL~tDpGL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~N~~-L~IepYLHqLlPsvLTCll~k 221 (495)
.|+.| |..|...-+ ..++|.++.++.+.+.. .+...-...+..+.++..... -.+.+|+.+++|.++.++
T Consensus 344 ~r~~a~~~l~~l~~~~~-~~~~~~~l~~l~~~l~~--~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l--- 417 (876)
T 1qgr_A 344 PCKAAGVCLMLLATCCE-DDIVPHVLPFIKEHIKN--PDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELM--- 417 (876)
T ss_dssp HHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHTTC--SSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHCc-HhhHHHHHHHHHHHccC--CChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh---
Confidence 45544 334443333 35566666666665543 466666667788888887655 346789999999999887
Q ss_pred ccCCCCCCcchHHHHHHHHHHHHHHHHhCCC--CcchHHHHHHHHHHHhcCCCCCchhhhHHHHHHHhhCHHHH------
Q 011039 222 RLGNRLADNHWELRDFTAKLVAAICKRYGHV--YNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGPNVV------ 293 (495)
Q Consensus 222 ~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~s--y~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aV------ 293 (495)
.+.++.+|..|+..|+.++..+... ....-+.++..+.+.+.|+ ...+-.|+.+|..+....-
T Consensus 418 ------~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~---~~v~~~a~~al~~l~~~~~~~~~~~ 488 (876)
T 1qgr_A 418 ------KDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE---PRVASNVCWAFSSLAEAAYEAADVA 488 (876)
T ss_dssp ------TCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC---HHHHHHHHHHHHHHHHHHHHTTSCT
T ss_pred ------CCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhhhccccc
Confidence 2567999999999999999987652 2234567888888888763 3445667777777765432
Q ss_pred -------HHhhccChHHHHHhhhHhHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 011039 294 -------RLLLLPNLGPYLSLLEPEMLLEKQKNEVKRHEAWRVYGALLQAAG 338 (495)
Q Consensus 294 -------r~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~aLl~A~g 338 (495)
...+.|+++.++..|...+......+...|..+..+.+.|..++|
T Consensus 489 ~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~ 540 (876)
T 1qgr_A 489 DDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSA 540 (876)
T ss_dssp TSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCC
T ss_pred cccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCc
Confidence 124678888888777665543211123445556666665555444
No 7
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=97.05 E-value=0.0051 Score=66.75 Aligned_cols=179 Identities=15% Similarity=0.159 Sum_probs=121.3
Q ss_pred HHHHH---HHHhhhcCCCccccchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcCCC-cccchhhhhhHHHHHHHHhc
Q 011039 145 VLFKQ---ALVSLATDSGLHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPH-IQIEPYLHQLMPSVVTCLVA 220 (495)
Q Consensus 145 ~~r~~---AL~sL~tDpGL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~N~~-L~IepYLHqLlPsvLTCll~ 220 (495)
..|.. +|..|...-| ..++|.++.++.+.+.. .++..-...+..+.++..... -.+.+|+.+++|.++.++
T Consensus 346 ~~r~~a~~~L~~l~~~~~-~~~~~~l~~~l~~~l~~--~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l-- 420 (861)
T 2bpt_A 346 NVSMSAGACLQLFAQNCG-NHILEPVLEFVEQNITA--DNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLM-- 420 (861)
T ss_dssp HHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHTTC--SSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGG--
T ss_pred cHHHHHHHHHHHHHHHcc-HhHHHHHHHHHHHHcCC--CChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc--
Confidence 45554 4444454444 45677777777666543 456666667888888887654 456788888888887765
Q ss_pred cccCCCCCCcchHHHHHHHHHHHHHHHHhCCCC--cchHHHHHHHHHHHhcCCCCCchhhhHHHHHHHhhCHHHH---HH
Q 011039 221 KRLGNRLADNHWELRDFTAKLVAAICKRYGHVY--NTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGPNVV---RL 295 (495)
Q Consensus 221 k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~sy--~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aV---r~ 295 (495)
.+.++.+|+.|+..|+.++..++... ...-+.++..+.+.+.|+ ......|..+|..+....- ..
T Consensus 421 -------~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~---~~v~~~a~~al~~l~~~~~~~~~~ 490 (861)
T 2bpt_A 421 -------NDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH---PKVATNCSWTIINLVEQLAEATPS 490 (861)
T ss_dssp -------GCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC---HHHHHHHHHHHHHHHHHHSSSSSC
T ss_pred -------CCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC---hHHHHHHHHHHHHHHHhcccccch
Confidence 24589999999999999999876532 345677888888888764 4566777788877754432 24
Q ss_pred hhccChHHHHHhhhHhHhhhhhhhhhhhhHHHHHHHHHHHHHHH
Q 011039 296 LLLPNLGPYLSLLEPEMLLEKQKNEVKRHEAWRVYGALLQAAGQ 339 (495)
Q Consensus 296 lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~aLl~A~g~ 339 (495)
.+.|+++.++..|-+.+... ..+...|..|.++.+.+....|.
T Consensus 491 ~l~~~~~~il~~L~~~l~~~-d~~~~vr~~a~~al~~l~~~~~~ 533 (861)
T 2bpt_A 491 PIYNFYPALVDGLIGAANRI-DNEFNARASAFSALTTMVEYATD 533 (861)
T ss_dssp GGGGGHHHHHHHHHHHHTCS-CCGGGHHHHHHHHHHHHHHHCCG
T ss_pred hhHHHHHHHHHHHHHHHhCc-CcchHHHHHHHHHHHHHHHHcch
Confidence 45688888877776655421 12245677777777777776553
No 8
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.04 E-value=0.0068 Score=56.83 Aligned_cols=129 Identities=14% Similarity=0.126 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHhcCCCcccchhhhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 011039 185 LFALMRVVWNLLQNPHIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTL 264 (495)
Q Consensus 185 L~~llrmv~ALl~N~~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~sy~~L~~RI~~tL 264 (495)
+..+-.++..|-. .+++|+.+++|.++.++- +..-.+|+.|+..|..++...+ + ..++..+
T Consensus 78 ~~~l~~la~~l~~----~~~~~~~~ilp~ll~~l~---------d~~~~vr~~a~~aL~~~~~~~~-----~-~~ll~~l 138 (242)
T 2qk2_A 78 GKCLALLAKGLAK----RFSNYASACVPSLLEKFK---------EKKPNVVTALREAIDAIYASTS-----L-EAQQESI 138 (242)
T ss_dssp HHHHHHHHHHHGG----GGHHHHHHHHHHHHHGGG---------CCCHHHHHHHHHHHHHHHTTSC-----H-HHHHHHH
T ss_pred HHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHc---------CCCHHHHHHHHHHHHHHHHcCC-----H-HHHHHHH
Confidence 4445555544422 568999999999998862 3445899999999999987543 2 4566777
Q ss_pred HHHhcCCCCCchhhhHHHHHHHhh----CHHHHHHhhccChHHHHHhhhHhHhhhhhhhhhhhhHHHHHHHHHHHHHHHh
Q 011039 265 LNALLDPKRALTQHYGAVQGLAAL----GPNVVRLLLLPNLGPYLSLLEPEMLLEKQKNEVKRHEAWRVYGALLQAAGQC 340 (495)
Q Consensus 265 ~k~llDp~k~l~t~YGAI~GL~aL----G~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~aLl~A~g~~ 340 (495)
...+.+ ++....-+++..|..+ |++ ....++++.+...|...+.+ .+..+|..|..+.+.+..++|.-
T Consensus 139 ~~~l~~--~~~~vr~~~l~~l~~~l~~~~~~---~~~~~~l~~l~p~l~~~l~D---~~~~VR~~A~~~l~~l~~~vg~~ 210 (242)
T 2qk2_A 139 VESLSN--KNPSVKSETALFIARALTRTQPT---ALNKKLLKLLTTSLVKTLNE---PDPTVRDSSAEALGTLIKLMGDK 210 (242)
T ss_dssp HHHTTC--SCHHHHHHHHHHHHHHHTTCCGG---GCCHHHHHHHHHHHHHHHTS---SCHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHcC--CChHHHHHHHHHHHHHHHHcCCC---CccHHHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHHHHcCHH
Confidence 777764 3556677777666653 333 22345556666666555533 35678999999999999999964
No 9
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=96.92 E-value=0.013 Score=56.54 Aligned_cols=184 Identities=11% Similarity=0.057 Sum_probs=113.3
Q ss_pred CchHHHHHHHHhhhc-C----CCccc-cch--hHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcCCC-cccc-hhhhhhH
Q 011039 142 SDSVLFKQALVSLAT-D----SGLHP-LVP--YFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPH-IQIE-PYLHQLM 211 (495)
Q Consensus 142 ~d~~~r~~AL~sL~t-D----pGL~q-LLP--Yfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~N~~-L~Ie-pYLHqLl 211 (495)
.+-..|++|+..|.. - +.+.. -.+ -++.-+...+..- .|......-++.+..|...=. =.++ +|...++
T Consensus 28 ~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D-~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~ll 106 (249)
T 2qk1_A 28 SKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKD-ANIQAVALAAQSVELICDKLKTPGFSKDYVSLVF 106 (249)
T ss_dssp SSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHhcccccccHHHHHHHH
Confidence 445567888766655 2 22321 112 2333333333111 244433444455544443222 2467 9999999
Q ss_pred HHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCCcch-HHHHHHHHHHHhcCCCCCchhhhHHHHHHHhhCH
Q 011039 212 PSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTL-QTRLTKTLLNALLDPKRALTQHYGAVQGLAALGP 290 (495)
Q Consensus 212 PsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~sy~~L-~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~ 290 (495)
|+++..+=. ..=.+|+.|...|..||...+.....- -..++..+...|. ++....+.+++..|..+=.
T Consensus 107 p~ll~~l~d---------kk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~--~k~~~vk~~al~~l~~~~~ 175 (249)
T 2qk1_A 107 TPLLDRTKE---------KKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMK--HKTPQIRMECTQLFNASMK 175 (249)
T ss_dssp HHHHHGGGC---------CCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTT--CSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcC---------CCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHc--CCChHHHHHHHHHHHHHHH
Confidence 999987622 234799999999999999875322210 2347777777775 3356888999888877643
Q ss_pred HHHH--HhhccCh-HHHHHhhhHhHhhhhhhhhhhhhHHHHHHHHHHHHHHHh
Q 011039 291 NVVR--LLLLPNL-GPYLSLLEPEMLLEKQKNEVKRHEAWRVYGALLQAAGQC 340 (495)
Q Consensus 291 ~aVr--~lllP~L-~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~aLl~A~g~~ 340 (495)
.+-. ..+.|++ +.+...|...+.+ .+..+|..|..+.+++..++|.-
T Consensus 176 ~~~~~~~~l~~~l~~~iip~l~~~l~D---~~~~VR~aA~~~l~~i~~~vG~~ 225 (249)
T 2qk1_A 176 EEKDGYSTLQRYLKDEVVPIVIQIVND---TQPAIRTIGFESFAILIKIFGMN 225 (249)
T ss_dssp HCCSCSHHHHHHHTTTHHHHHHHHHTC---SSHHHHHHHHHHHHHHHHHHCSG
T ss_pred HcCCcchhHHHHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHhCHH
Confidence 3321 2345666 6777766666643 36779999999999999999963
No 10
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=96.84 E-value=0.015 Score=64.17 Aligned_cols=149 Identities=21% Similarity=0.235 Sum_probs=109.0
Q ss_pred HHHhhhcCCCccccchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcCCCcccchhhhhhHHHHHHHHhccccCCCCCC
Q 011039 150 ALVSLATDSGLHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHIQIEPYLHQLMPSVVTCLVAKRLGNRLAD 229 (495)
Q Consensus 150 AL~sL~tDpGL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~N~~L~IepYLHqLlPsvLTCll~k~l~~~~~~ 229 (495)
+|..|....| ..++|.++.++.+.+.. .+...-...+..+.++..+..-.+++|+.+++|.++.++ .+
T Consensus 344 ~L~~la~~~~-~~~~~~l~~~l~~~l~~--~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l---------~d 411 (852)
T 4fdd_A 344 ALDVLANVYR-DELLPHILPLLKELLFH--HEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCL---------SD 411 (852)
T ss_dssp HHHHHHHHHG-GGGHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHT---------TC
T ss_pred HHHHHHHhcc-HHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHc---------CC
Confidence 4445554444 45677777777665543 367777778888888888877788899999999999886 36
Q ss_pred cchHHHHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHhcCCCCCchhhhHHHHHHHhhCHHHHHHhhccChHHHHHhh
Q 011039 230 NHWELRDFTAKLVAAICKRYGH-VYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGPNVVRLLLLPNLGPYLSLL 308 (495)
Q Consensus 230 ~hw~LRd~AA~lL~~I~~kf~~-sy~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~L 308 (495)
.++.+|..|+..|+.++...+. ........++..|.+.+.|+ ....+..|..+|..+....- ..+.|+++.+...|
T Consensus 412 ~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~--~~~vr~~a~~aL~~l~~~~~-~~l~~~l~~ll~~L 488 (852)
T 4fdd_A 412 KKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDS--NKRVQEAACSAFATLEEEAC-TELVPYLAYILDTL 488 (852)
T ss_dssp SSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHHG-GGGGGGHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHhh-HhhHhHHHHHHHHH
Confidence 7899999999999999986643 23345567888888888765 45677778888887754433 34688888888777
Q ss_pred hHhHh
Q 011039 309 EPEML 313 (495)
Q Consensus 309 e~~l~ 313 (495)
...+.
T Consensus 489 ~~~l~ 493 (852)
T 4fdd_A 489 VFAFS 493 (852)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
No 11
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=96.70 E-value=0.027 Score=61.13 Aligned_cols=119 Identities=12% Similarity=0.069 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHhcCCCcccchhhhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 011039 185 LFALMRVVWNLLQNPHIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTL 264 (495)
Q Consensus 185 L~~llrmv~ALl~N~~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~sy~~L~~RI~~tL 264 (495)
....++.+.+|+.+-.-.+.+|+.+++|.++.++-. .+++.+|..|..+++.|++.++......-+.|+..+
T Consensus 625 ~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~--------~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l 696 (876)
T 1qgr_A 625 QEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKN--------YAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLL 696 (876)
T ss_dssp HHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHH--------CTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--------cchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 344566666666654556789999999999888732 147899999999999999999876555667888999
Q ss_pred HHHhcCCCCCchhhhHHHHHHHhhCHHHHHHhhccChHHHHHhhhHhH
Q 011039 265 LNALLDPKRALTQHYGAVQGLAALGPNVVRLLLLPNLGPYLSLLEPEM 312 (495)
Q Consensus 265 ~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l 312 (495)
.+.|.++.......--++.++..+... +..-+.|+++.++..|...+
T Consensus 697 ~~~l~~~~~~~~~~~~~~~~l~~i~~~-~g~~~~~~l~~~~~~l~~~~ 743 (876)
T 1qgr_A 697 LENLGNENVHRSVKPQILSVFGDIALA-IGGEFKKYLEVVLNTLQQAS 743 (876)
T ss_dssp HHHHTCTTSCGGGHHHHHHHHHHHHHH-HGGGGGGGHHHHHHHHHHHH
T ss_pred HHHhCCccccHHhhHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHH
Confidence 999876433333444444444443221 11224566666666665544
No 12
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=96.41 E-value=0.021 Score=53.42 Aligned_cols=106 Identities=16% Similarity=0.155 Sum_probs=75.5
Q ss_pred HHHHHHHHHccCCchHHHH---HHHHhhhcCCCccccchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcC--CCcccc
Q 011039 130 YFDKITELAVSRSDSVLFK---QALVSLATDSGLHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQN--PHIQIE 204 (495)
Q Consensus 130 Yf~kIt~all~~~d~~~r~---~AL~sL~tDpGL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~N--~~L~Ie 204 (495)
++.-|.+.+- ......|. .||..+-...++..++|.+...+.+ +|...-...+.++..++.+ |.-...
T Consensus 99 ilp~ll~~l~-d~~~~vr~~a~~aL~~~~~~~~~~~ll~~l~~~l~~------~~~~vr~~~l~~l~~~l~~~~~~~~~~ 171 (242)
T 2qk2_A 99 CVPSLLEKFK-EKKPNVVTALREAIDAIYASTSLEAQQESIVESLSN------KNPSVKSETALFIARALTRTQPTALNK 171 (242)
T ss_dssp HHHHHHHGGG-CCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTTC------SCHHHHHHHHHHHHHHHTTCCGGGCCH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcC------CChHHHHHHHHHHHHHHHHcCCCCccH
Confidence 4444444433 33445555 3566666667777778777665432 3566666678888887766 445677
Q ss_pred hhhhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCC
Q 011039 205 PYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGH 251 (495)
Q Consensus 205 pYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~ 251 (495)
+|++.++|.++.|+ .|.+|.+|+.|...|+.|+...|.
T Consensus 172 ~~l~~l~p~l~~~l---------~D~~~~VR~~A~~~l~~l~~~vg~ 209 (242)
T 2qk2_A 172 KLLKLLTTSLVKTL---------NEPDPTVRDSSAEALGTLIKLMGD 209 (242)
T ss_dssp HHHHHHHHHHHHHH---------TSSCHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHh---------cCCChHHHHHHHHHHHHHHHHcCH
Confidence 99999999999998 367899999999999999988775
No 13
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=95.66 E-value=0.27 Score=56.50 Aligned_cols=117 Identities=15% Similarity=0.181 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHhcCCCc-ccchhhhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCC-------CCc
Q 011039 183 SLLFALMRVVWNLLQNPHI-QIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGH-------VYN 254 (495)
Q Consensus 183 ~~L~~llrmv~ALl~N~~L-~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~-------sy~ 254 (495)
......+..+..++.+-.- .+.+|+..++|.++.|+ .+..|.+|..|...++.+++.++. ...
T Consensus 492 ~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l---------~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~ 562 (1230)
T 1u6g_C 492 NLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACV---------GDPFYKITSEALLVTQQLVKVIRPLDQPSSFDAT 562 (1230)
T ss_dssp HHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHH---------TCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHH---------cccchHHHHHHHHHHHHHHHHhcCcccccccchH
Confidence 4445566666666654332 26789999999999876 245689999999999999999886 333
Q ss_pred chHHHHHHHHHHHhcCCCCCchhhhHHHHHHHhhCHHHHHHhhccChHHHHHhhh
Q 011039 255 TLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGPNVVRLLLLPNLGPYLSLLE 309 (495)
Q Consensus 255 ~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le 309 (495)
.....|+..+...|.+.+.....+-.|+.+|..|-..+=. .+.|+++.++..|.
T Consensus 563 ~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~-~~~~~~~~~l~~L~ 616 (1230)
T 1u6g_C 563 PYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGD-NLGSDLPNTLQIFL 616 (1230)
T ss_dssp HHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGG-GCCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCc-hhhhhHHHHHHHHH
Confidence 4556788888888854444556667777777766332211 12344455544443
No 14
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=95.30 E-value=0.59 Score=46.29 Aligned_cols=188 Identities=12% Similarity=0.097 Sum_probs=107.4
Q ss_pred HHHHHHHHHccCC-chHHHHHHHHhhhc-------CCCccccchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcCCCc
Q 011039 130 YFDKITELAVSRS-DSVLFKQALVSLAT-------DSGLHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHI 201 (495)
Q Consensus 130 Yf~kIt~all~~~-d~~~r~~AL~sL~t-------DpGL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~N~~L 201 (495)
.+..+...+...+ +...|.+|+..|.. +..-....+|++..+.+.+. -.+...-...++.+..|..+-.=
T Consensus 173 ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~vr~~~~~~l~~l~~~~~~ 250 (462)
T 1ibr_B 173 ILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQ--CPDTRVRVAALQNLVKIMSLYYQ 250 (462)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTT--CSSHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHH
Confidence 3444444443321 45678888776643 11111123444554443322 13555566677888888877666
Q ss_pred ccchhhh-hhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHh------------------CCCCcchH---HH
Q 011039 202 QIEPYLH-QLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRY------------------GHVYNTLQ---TR 259 (495)
Q Consensus 202 ~IepYLH-qLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf------------------~~sy~~L~---~R 259 (495)
.+.+|+. .+++.++.|+- +..-.+|..|...+..+|+.- ......++ +.
T Consensus 251 ~~~~~~~~~l~~~~~~~~~---------~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (462)
T 1ibr_B 251 YMETYMGPALFAITIEAMK---------SDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQY 321 (462)
T ss_dssp GCTTTTTTTHHHHHHHHHH---------CSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHc---------CCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhh
Confidence 7889999 99998887761 344589999999999998763 11222222 56
Q ss_pred HHHHHHHHhcCC-----CCCchhhhHHHHHHHhhCHHHHHHhhccChHHHHHhhhHhHhhhhhhhhhhhhHHHHHHHHHH
Q 011039 260 LTKTLLNALLDP-----KRALTQHYGAVQGLAALGPNVVRLLLLPNLGPYLSLLEPEMLLEKQKNEVKRHEAWRVYGALL 334 (495)
Q Consensus 260 I~~tL~k~llDp-----~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~aLl 334 (495)
++..+.+.+.+. ........+|..+|..++...-+ .++| .+...+...+.+ .-|++..+.+
T Consensus 322 l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~-~~~~---~~~~~l~~~l~~----------~~~~~r~aal 387 (462)
T 1ibr_B 322 LVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-DIVP---HVLPFIKEHIKN----------PDWRYRDAAV 387 (462)
T ss_dssp HHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT-THHH---HHHHHHHHHTTC----------SSHHHHHHHH
T ss_pred ccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH-HHHH---HHHHHHHHHhcC----------CChHHHHHHH
Confidence 777777777532 23456677888888777543211 1122 222223322321 1266777777
Q ss_pred HHHHHhHh
Q 011039 335 QAAGQCIY 342 (495)
Q Consensus 335 ~A~g~~~~ 342 (495)
.|+|.+..
T Consensus 388 ~~l~~l~~ 395 (462)
T 1ibr_B 388 MAFGCILE 395 (462)
T ss_dssp HHHHHTSS
T ss_pred HHHHHHhc
Confidence 77776653
No 15
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=95.21 E-value=0.083 Score=54.32 Aligned_cols=112 Identities=10% Similarity=0.093 Sum_probs=56.7
Q ss_pred hhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCchhhhHHHHHHHh
Q 011039 208 HQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAA 287 (495)
Q Consensus 208 HqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~sy~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~a 287 (495)
..++|.++.++ .+.+|.+|+.|+..++.++..++.. .....++..+.+.+.|+ +...+-.|+.++..
T Consensus 440 ~~l~~~l~~~l---------~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~llp~l~~~~~~~--~~~~R~~a~~~l~~ 506 (588)
T 1b3u_A 440 EKLNSLCMAWL---------VDHVYAIREAATSNLKKLVEKFGKE--WAHATIIPKVLAMSGDP--NYLHRMTTLFCINV 506 (588)
T ss_dssp HHHHHHHHHGG---------GCSSHHHHHHHHHHHHHHHHHHCHH--HHHHHTHHHHHHTTTCS--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh---------cCCcHHHHHHHHHHHHHHHHHhCch--hHHHHHHHHHHHHhhCC--CHHHHHHHHHHHHH
Confidence 34566555543 2456788888888888888887753 22344555555444332 34455556666655
Q ss_pred hCHHHHHHhhccChHHHHHhhhHhHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 011039 288 LGPNVVRLLLLPNLGPYLSLLEPEMLLEKQKNEVKRHEAWRVYGALLQAAG 338 (495)
Q Consensus 288 LG~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~aLl~A~g 338 (495)
++...-... +++.+...|...+. ..+..+|..|.++.+.+...+|
T Consensus 507 l~~~~~~~~---~~~~~~~~l~~~l~---d~~~~Vr~~a~~~l~~l~~~~~ 551 (588)
T 1b3u_A 507 LSEVCGQDI---TTKHMLPTVLRMAG---DPVANVRFNVAKSLQKIGPILD 551 (588)
T ss_dssp HHHHHHHHH---HHHHTHHHHHHGGG---CSCHHHHHHHHHHHHHHGGGSC
T ss_pred HHHhcCHHH---HHHHHHHHHHhhCC---CCCchHHHHHHHHHHHHHHHhc
Confidence 543221111 11112222222221 1234566666666666655443
No 16
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=95.20 E-value=0.33 Score=49.78 Aligned_cols=108 Identities=15% Similarity=0.087 Sum_probs=65.5
Q ss_pred hhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCchhhhHHHHHHH
Q 011039 207 LHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLA 286 (495)
Q Consensus 207 LHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~sy~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~ 286 (495)
...++|.+..++ .++++.+|..|+..|+.+++.++.. ...+.++..+.+.+.|+. ...+..|+.+|.
T Consensus 162 ~~~l~~~l~~l~---------~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~--~~vr~~a~~~l~ 228 (588)
T 1b3u_A 162 KAELRQYFRNLC---------SDDTPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASDEQ--DSVRLLAVEACV 228 (588)
T ss_dssp HHHHHHHHHHHH---------TCSCHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTCSC--HHHHTTHHHHHH
T ss_pred HHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHHHHHhcHH--hHHHHHHHHHHHHhcCCc--HHHHHHHHHHHH
Confidence 445666554432 2567899999999999999877642 234566667777776654 466678888877
Q ss_pred hhCH----HHHHHhhccChHHHHHhhhHhHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 011039 287 ALGP----NVVRLLLLPNLGPYLSLLEPEMLLEKQKNEVKRHEAWRVYGALLQAA 337 (495)
Q Consensus 287 aLG~----~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~aLl~A~ 337 (495)
.++. +.+...++|.+..+. . ..+..+|..|.++.|.+...+
T Consensus 229 ~l~~~~~~~~~~~~~~~~l~~~~-------~---d~~~~vR~~a~~~l~~l~~~~ 273 (588)
T 1b3u_A 229 NIAQLLPQEDLEALVMPTLRQAA-------E---DKSWRVRYMVADKFTELQKAV 273 (588)
T ss_dssp HHHHHSCHHHHHHHTHHHHHHHH-------T---CSSHHHHHHHHHTHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHc-------c---CCCHHHHHHHHHHHHHHHHHh
Confidence 7643 333344444443332 1 123345666666666665544
No 17
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=94.84 E-value=0.41 Score=55.03 Aligned_cols=188 Identities=15% Similarity=0.156 Sum_probs=109.5
Q ss_pred HHHHHHHHccCCchHHHHHHHHhhhcC---CCcc---ccchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcCCCcccc
Q 011039 131 FDKITELAVSRSDSVLFKQALVSLATD---SGLH---PLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHIQIE 204 (495)
Q Consensus 131 f~kIt~all~~~d~~~r~~AL~sL~tD---pGL~---qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~N~~L~Ie 204 (495)
+..+.+.+.+ .|+..|..|++.|.+. +..+ ...++++..+.+.+.. .+...=..-++.+..|... + =+
T Consensus 8 l~~lL~~l~s-~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d--~~~~vR~~A~~~L~~l~~~--~-~~ 81 (1230)
T 1u6g_C 8 ISNLLEKMTS-SDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLED--KNGEVQNLAVKCLGPLVSK--V-KE 81 (1230)
T ss_dssp HHHHHHHTTC-SSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTC--SSHHHHHHHHHHHHHHHTT--S-CH
T ss_pred HHHHHHhcCC-CCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHh--C-CH
Confidence 3344455554 4566788777655432 1111 1122333333333321 2333322334444555542 2 12
Q ss_pred hhhhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCC------CcchHHHHHHHHHHHhcCCCCCchhh
Q 011039 205 PYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHV------YNTLQTRLTKTLLNALLDPKRALTQH 278 (495)
Q Consensus 205 pYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~s------y~~L~~RI~~tL~k~llDp~k~l~t~ 278 (495)
+|+.++++.++.++. +++-.+|..|+..|+.|+..++.. .....+.++..|.+.+.| .......
T Consensus 82 ~~~~~i~~~Ll~~l~---------d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~-~~~~~~~ 151 (1230)
T 1u6g_C 82 YQVETIVDTLCTNML---------SDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAK-QEDVSVQ 151 (1230)
T ss_dssp HHHHHHHHHHHHHTT---------CSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSC-CSCHHHH
T ss_pred HHHHHHHHHHHHHhc---------CCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcC-CCchHHH
Confidence 688888888888752 233478999999999999987754 123466788888888875 3456788
Q ss_pred hHHHHHHHhhCHHHHHHhhccChHHHHHhhhHhHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 011039 279 YGAVQGLAALGPNVVRLLLLPNLGPYLSLLEPEMLLEKQKNEVKRHEAWRVYGALLQAAG 338 (495)
Q Consensus 279 YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~aLl~A~g 338 (495)
.||+..|..+-... ...+.|+++.+...+-+.+... +..+|..|.+..+.+....+
T Consensus 152 ~~al~~l~~~~~~~-~~~l~~~~~~ll~~l~~~L~~~---~~~vR~~a~~al~~l~~~~~ 207 (1230)
T 1u6g_C 152 LEALDIMADMLSRQ-GGLLVNFHPSILTCLLPQLTSP---RLAVRKRTIIALGHLVMSCG 207 (1230)
T ss_dssp HHHHHHHHHHHHHT-CSSCTTTHHHHHHHHGGGGGCS---SHHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHHHHHh-HhHHHHHHHHHHHHHHHHHcCC---cHHHHHHHHHHHHHHHHhcC
Confidence 89998888763221 1245688888887777666432 34566777666666655443
No 18
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=92.51 E-value=1.4 Score=42.15 Aligned_cols=144 Identities=9% Similarity=0.107 Sum_probs=85.2
Q ss_pred HHHHHHHHHccCCchHHHHHHH---HhhhcCCCcc--ccc-hhHHHHHHHhhhcCCC--CHHHHHHHHHHHHHHhc--CC
Q 011039 130 YFDKITELAVSRSDSVLFKQAL---VSLATDSGLH--PLV-PYFTYFVADEVSRGLN--NYSLLFALMRVVWNLLQ--NP 199 (495)
Q Consensus 130 Yf~kIt~all~~~d~~~r~~AL---~sL~tDpGL~--qLL-PYfv~FI~e~V~~nl~--nl~~L~~llrmv~ALl~--N~ 199 (495)
.++-+...+-...+...+..|+ ..|.+ |++ .+- ||....+-.-+. .++ .-.+.......+.+++. ||
T Consensus 61 ~~~~L~~~l~~D~n~~v~~~A~~al~~la~--~l~~~~f~~~y~~~llp~ll~-~l~dkk~~V~~aa~~al~~i~~~~~~ 137 (249)
T 2qk1_A 61 LLGIYGHIIQKDANIQAVALAAQSVELICD--KLKTPGFSKDYVSLVFTPLLD-RTKEKKPSVIEAIRKALLTICKYYDP 137 (249)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHHHHHHH--HHCTTTSCHHHHHHHHHHHHH-GGGCCCHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHH--hcccccccHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHccc
Confidence 3555555553344555565544 44453 333 333 565554433222 222 23343445555666665 55
Q ss_pred CcccchhhhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCC---CcchH-HHHHHHHHHHhcCCCCCc
Q 011039 200 HIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHV---YNTLQ-TRLTKTLLNALLDPKRAL 275 (495)
Q Consensus 200 ~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~s---y~~L~-~RI~~tL~k~llDp~k~l 275 (495)
....+|+..+++.++.++= ...|.+|..+..+|+.++...+.. +...- +.|+..+.+.+-|.+.
T Consensus 138 -~~~~~~l~~ll~~l~~~l~---------~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~-- 205 (249)
T 2qk1_A 138 -LASSGRNEDMLKDILEHMK---------HKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQP-- 205 (249)
T ss_dssp -TCTTCTTHHHHHHHHHHTT---------CSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSH--
T ss_pred -cccCCcHHHHHHHHHHHHc---------CCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCH--
Confidence 3344679999998888752 225899999999999999998752 22233 6778888888876643
Q ss_pred hhhhHHHHHHHhh
Q 011039 276 TQHYGAVQGLAAL 288 (495)
Q Consensus 276 ~t~YGAI~GL~aL 288 (495)
..+=.|+-+|.++
T Consensus 206 ~VR~aA~~~l~~i 218 (249)
T 2qk1_A 206 AIRTIGFESFAIL 218 (249)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3445555556554
No 19
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=91.34 E-value=1.7 Score=48.58 Aligned_cols=148 Identities=12% Similarity=0.124 Sum_probs=91.0
Q ss_pred HHHhhhcCCCccccchhHHHHHHHhhhc---CCCCHHHHHHHHHHHHHHhcCCCcccchhhhhhHHHHHHHHhccccCCC
Q 011039 150 ALVSLATDSGLHPLVPYFTYFVADEVSR---GLNNYSLLFALMRVVWNLLQNPHIQIEPYLHQLMPSVVTCLVAKRLGNR 226 (495)
Q Consensus 150 AL~sL~tDpGL~qLLPYfv~FI~e~V~~---nl~nl~~L~~llrmv~ALl~N~~L~IepYLHqLlPsvLTCll~k~l~~~ 226 (495)
+|..+..--| ..+++.+..|+.+.+.. +-.++......+..+.++.....-...+++.++++ ++..+ ...
T Consensus 444 ~l~~~~~~~~-~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~-~l~~l-----~~~ 516 (971)
T 2x1g_F 444 TFMYCYDVLN-DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMR-VLAEI-----PYE 516 (971)
T ss_dssp HHHHHHTTCT-THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHH-HHHHS-----CTT
T ss_pred HHHHHHHHHh-HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHH-HHHhc-----Ccc
Confidence 3444444433 56777888888776653 12567777778888888887766555677777777 43332 211
Q ss_pred CCCcchHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCchhhhHHHHHHHhhCHHHHHHhhccChHHHHH
Q 011039 227 LADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGPNVVRLLLLPNLGPYLS 306 (495)
Q Consensus 227 ~~~~hw~LRd~AA~lL~~I~~kf~~sy~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~ 306 (495)
+.|-.+|.-|..+|+.++.-+... +..-+.++..+.+.| | ... .--|..+|..|- +..+..+.|+++.+..
T Consensus 517 --d~~~~vr~~a~~~l~~~~~~l~~~-~~~l~~vl~~l~~~l-~--~~v--~~~A~~al~~l~-~~~~~~l~p~~~~ll~ 587 (971)
T 2x1g_F 517 --KLNVKLLGTALETMGSYCNWLMEN-PAYIPPAINLLVRGL-N--SSM--SAQATLGLKELC-RDCQLQLKPYADPLLN 587 (971)
T ss_dssp --TSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHH-H--SSC--HHHHHHHHHHHH-HHCHHHHHHHHHHHHH
T ss_pred --ccCHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHh-C--hHH--HHHHHHHHHHHH-HHHHHhccccHHHHHH
Confidence 346789999999999999877653 455667888888887 5 222 223333444443 3455667899998888
Q ss_pred hhhHhHh
Q 011039 307 LLEPEML 313 (495)
Q Consensus 307 ~Le~~l~ 313 (495)
.|...+.
T Consensus 588 ~l~~~l~ 594 (971)
T 2x1g_F 588 ACHASLN 594 (971)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 8776654
No 20
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=90.85 E-value=0.49 Score=43.39 Aligned_cols=141 Identities=12% Similarity=0.085 Sum_probs=81.4
Q ss_pred HHHHHHHHccCCchHHHHHHHHhhhc-----CCCc-----cccchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhc-CC
Q 011039 131 FDKITELAVSRSDSVLFKQALVSLAT-----DSGL-----HPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQ-NP 199 (495)
Q Consensus 131 f~kIt~all~~~d~~~r~~AL~sL~t-----DpGL-----~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~-N~ 199 (495)
|+.+++.+-++ +.+.+..|+..|+. ++.. ...+|.++.++.+ .+.......+..+..|.. |+
T Consensus 14 ~~~~~~~L~s~-~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~------~~~~v~~~a~~~L~~l~~~~~ 86 (252)
T 4db8_A 14 LPQMTQQLNSD-DMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSS------PNEQILQEALWALSNIASGGN 86 (252)
T ss_dssp HHHHHHHHHSS-CSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGC------SCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcC------CCHHHHHHHHHHHHHHhcCCH
Confidence 55666655553 33345555544431 1111 1345666666543 235555666777777776 33
Q ss_pred CcccchhhhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHhcCCCCCchhh
Q 011039 200 HIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHV-YNTLQTRLTKTLLNALLDPKRALTQH 278 (495)
Q Consensus 200 ~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~s-y~~L~~RI~~tL~k~llDp~k~l~t~ 278 (495)
...-.-.-...+|.++.++- ++++.+|..|+..|+.|+...... -.-+...++..|.+.+.++ .....
T Consensus 87 ~~~~~i~~~g~i~~L~~lL~---------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~ 155 (252)
T 4db8_A 87 EQIQAVIDAGALPALVQLLS---------SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQIL 155 (252)
T ss_dssp HHHHHHHHTTHHHHHHHGGG---------CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS--CHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHc---------CCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCC--CHHHH
Confidence 32221112346777776652 235799999999999997542221 1123334677888888754 55677
Q ss_pred hHHHHHHHhhC
Q 011039 279 YGAVQGLAALG 289 (495)
Q Consensus 279 YGAI~GL~aLG 289 (495)
.-|+.+|..|.
T Consensus 156 ~~a~~~L~~l~ 166 (252)
T 4db8_A 156 QEALWALSNIA 166 (252)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 78888888874
No 21
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=90.38 E-value=2.6 Score=40.17 Aligned_cols=153 Identities=12% Similarity=0.052 Sum_probs=88.0
Q ss_pred CCHHHHHHHHHHHHHHhcCCCcc--cchhhhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCCcchH
Q 011039 180 NNYSLLFALMRVVWNLLQNPHIQ--IEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQ 257 (495)
Q Consensus 180 ~nl~~L~~llrmv~ALl~N~~L~--IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~sy~~L~ 257 (495)
.|.......+.++.+++.+-... ...+....+..++..++.|-++.. .=.+|+.|..++-.++......
T Consensus 67 sN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~----k~~~~~~a~~~l~~~~~~~~~~----- 137 (278)
T 4ffb_C 67 SNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSS----RATTKTQSMSCILSLCGLDTSI----- 137 (278)
T ss_dssp SSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCC----CHHHHHHHHHHHHHHHHTSSSS-----
T ss_pred chHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCc----cHHHHHHHHHHHHHHHHhcCcH-----
Confidence 46777778888899988764443 233445666777777777766542 2378999988888877654422
Q ss_pred HHHHHHHHHHhcCCCCCchhhhHHHHHHHh----hCHHHHHHhhccChHHHHHhhhHhHhhhhhhhhhhhhHHHHHHHHH
Q 011039 258 TRLTKTLLNALLDPKRALTQHYGAVQGLAA----LGPNVVRLLLLPNLGPYLSLLEPEMLLEKQKNEVKRHEAWRVYGAL 333 (495)
Q Consensus 258 ~RI~~tL~k~llDp~k~l~t~YGAI~GL~a----LG~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~aL 333 (495)
..+...+...+- +++....-+++..|.. +|..++.. -|.++.+...|-..+. ..|..+|.+|..+.+.+
T Consensus 138 ~~~~e~l~~~l~--~Knpkv~~~~l~~l~~~l~~fg~~~~~~--k~~l~~i~~~l~k~l~---d~~~~VR~aA~~l~~~l 210 (278)
T 4ffb_C 138 TQSVELVIPFFE--KKLPKLIAAAANCVYELMAAFGLTNVNV--QTFLPELLKHVPQLAG---HGDRNVRSQTMNLIVEI 210 (278)
T ss_dssp HHHHHHHGGGGG--CSCHHHHHHHHHHHHHHHHHHTTTTCCH--HHHHHHHGGGHHHHHT---CSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--ccCHHHHHHHHHHHHHHHHHhCCCcCCc--hhHHHHHHHHHHHHHh---CCcHHHHHHHHHHHHHH
Confidence 344555555554 5666777777666553 45443211 1123333333333332 35788999999999999
Q ss_pred HHHHHHhHhhhhccC
Q 011039 334 LQAAGQCIYDRLKIF 348 (495)
Q Consensus 334 l~A~g~~~~~~~~~~ 348 (495)
..-+|..+....+.+
T Consensus 211 y~~~G~~~~~~~~~~ 225 (278)
T 4ffb_C 211 YKVTGNNSDLLEEIL 225 (278)
T ss_dssp HTC-----------C
T ss_pred HHHhCcchhhhhhhh
Confidence 988886554333333
No 22
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=89.59 E-value=1.6 Score=48.45 Aligned_cols=136 Identities=11% Similarity=0.106 Sum_probs=92.2
Q ss_pred ccchhHHHHHHHhhhc--CCCCHHHHHHHHHHHHHHhcCCCcccchhhhhhHHHHHHHHhccccCCCCCCcchHHHHHHH
Q 011039 162 PLVPYFTYFVADEVSR--GLNNYSLLFALMRVVWNLLQNPHIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTA 239 (495)
Q Consensus 162 qLLPYfv~FI~e~V~~--nl~nl~~L~~llrmv~ALl~N~~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA 239 (495)
.+++.+..++.+.+.. +-.++......+..+.++.....-...+++.++++ .+. .++. +|-.+|..+.
T Consensus 441 ~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~----~l~--~l~~----~~~~vr~~~~ 510 (963)
T 2x19_B 441 ELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIG----LIP--RISI----SNVQLADTVM 510 (963)
T ss_dssp HHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHH----HGG--GSCC----CSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHH----HHH--hCCC----CcHHHHHHHH
Confidence 4667777777776632 22578888888888888887765555677776666 222 2332 4778999999
Q ss_pred HHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCchhhhHHHHHHHhhCHHHHHHhhccChHHHHHhhhHhHh
Q 011039 240 KLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGPNVVRLLLLPNLGPYLSLLEPEML 313 (495)
Q Consensus 240 ~lL~~I~~kf~~sy~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l~ 313 (495)
.+++..++-+... +..-+.++..+.+.|.| ...+--|...|..|-.+ .+..+.|+++.+...|...+.
T Consensus 511 ~~l~~~~~~l~~~-~~~l~~vl~~l~~~l~~----~~V~~~A~~al~~l~~~-~~~~l~p~~~~il~~l~~~l~ 578 (963)
T 2x19_B 511 FTIGALSEWLADH-PVMINSVLPLVLHALGN----PELSVSSVSTLKKICRE-CKYDLPPYAANIVAVSQDVLM 578 (963)
T ss_dssp HHHHHTHHHHHHC-HHHHTTTHHHHHHHTTC----GGGHHHHHHHHHHHHHH-TGGGCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-HHHHHHHHHHHHHHhCC----chHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHhc
Confidence 9999998765432 34455677777777755 23444566666666543 556688999999988876654
No 23
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=89.44 E-value=8.7 Score=37.79 Aligned_cols=142 Identities=15% Similarity=0.202 Sum_probs=92.2
Q ss_pred CCHHHHHHHHHHHHHHhc---CCCcccchh-hhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCCcc
Q 011039 180 NNYSLLFALMRVVWNLLQ---NPHIQIEPY-LHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNT 255 (495)
Q Consensus 180 ~nl~~L~~llrmv~ALl~---N~~L~IepY-LHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~sy~~ 255 (495)
+|...+...+.++.+|+. -....+..| .-.++|.+ +.| +|. ..=.+|+.+-.++..++.-|+.
T Consensus 99 ~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~L----veK-lGd----~k~~vR~~~r~il~~l~~v~~~---- 165 (266)
T 2of3_A 99 TNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYL----LLK-TGE----AKDNMRTSVRDIVNVLSDVVGP---- 165 (266)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH----HHG-GGC----SSHHHHHHHHHHHHHHHHHHCH----
T ss_pred CCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHH----HHH-hCC----ChHHHHHHHHHHHHHHHHHCCH----
Confidence 466666666666666542 234555556 35666654 444 233 3347899999999999988754
Q ss_pred hHHHHHHHHHHHhcCCCCCchhhhHHHHHHHhhCHHHHHHhhccChHHHH---HhhhHhHhhhhhhhhhhhhHHHHHHHH
Q 011039 256 LQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGPNVVRLLLLPNLGPYL---SLLEPEMLLEKQKNEVKRHEAWRVYGA 332 (495)
Q Consensus 256 L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~---~~Le~~l~~~~~~~~~~r~ea~~v~~a 332 (495)
.++...+...|. .|+.-+.-|.+..+..+ +...=++ -..+. ..|-..+ ...|..+|..|..|...
T Consensus 166 --~~v~~~l~~g~k--sKN~R~R~e~l~~l~~l----i~~~G~~-~~~~l~~~~~ia~ll---~D~d~~VR~aAl~~lve 233 (266)
T 2of3_A 166 --LKMTPMLLDALK--SKNARQRSECLLVIEYY----ITNAGIS-PLKSLSVEKTVAPFV---GDKDVNVRNAAINVLVA 233 (266)
T ss_dssp --HHHHHHHHHGGG--CSCHHHHHHHHHHHHHH----HHHHCSG-GGGGGCHHHHHGGGG---GCSSHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHc--cCCHHHHHHHHHHHHHH----HHhcCCC-ccccccchHHHHHHH---cCCCHHHHHHHHHHHHH
Confidence 478888888885 67888888887776665 1111111 01122 2222222 23577899999999999
Q ss_pred HHHHHHHhHhhhhc
Q 011039 333 LLQAAGQCIYDRLK 346 (495)
Q Consensus 333 Ll~A~g~~~~~~~~ 346 (495)
+..-+|.-++..+.
T Consensus 234 ~y~~~Gd~v~k~lg 247 (266)
T 2of3_A 234 CFKFEGDQMWKAAG 247 (266)
T ss_dssp HHHHHTTHHHHHHC
T ss_pred HHHHhhHHHHHHHh
Confidence 99999999988874
No 24
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=89.18 E-value=2.3 Score=37.81 Aligned_cols=141 Identities=12% Similarity=0.101 Sum_probs=81.1
Q ss_pred HHHHHHHHHccCCchHHHHHHH---Hhhhc-CCCcc------ccchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhc-C
Q 011039 130 YFDKITELAVSRSDSVLFKQAL---VSLAT-DSGLH------PLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQ-N 198 (495)
Q Consensus 130 Yf~kIt~all~~~d~~~r~~AL---~sL~t-DpGL~------qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~-N 198 (495)
+|..+...+. .++...+..|+ ..|.. ++... ..+|.++.++.+ .+.......+..+..|.. |
T Consensus 13 ~~~~l~~LL~-s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~------~~~~v~~~a~~~L~~l~~~~ 85 (210)
T 4db6_A 13 ELPQMVQQLN-SPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS------PNEQILQEALWALSNIASGG 85 (210)
T ss_dssp CHHHHHHHTT-CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC------SCHHHHHHHHHHHHHHTTSC
T ss_pred hhHHHHHHhc-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcC------CCHHHHHHHHHHHHHHhcCC
Confidence 4555555444 34555565544 44442 22111 456777766643 255666667777777774 3
Q ss_pred CCcccchhhhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCC-cchHHHHHHHHHHHhcCCCCCchh
Q 011039 199 PHIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVY-NTLQTRLTKTLLNALLDPKRALTQ 277 (495)
Q Consensus 199 ~~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~sy-~~L~~RI~~tL~k~llDp~k~l~t 277 (495)
+...-.-.-+..+|.++.++- +.+..+|..|+..|..|+....... .-+...++..|.+.+.++ ....
T Consensus 86 ~~~~~~i~~~g~i~~L~~lL~---------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v 154 (210)
T 4db6_A 86 NEQIQAVIDAGALPALVQLLS---------SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQI 154 (210)
T ss_dssp HHHHHHHHHTTCHHHHHHHTT---------CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHH
T ss_pred cHHHHHHHHCCCHHHHHHHHc---------CCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC--CHHH
Confidence 332222222457888888762 2347999999999999985211100 112344667778777654 4556
Q ss_pred hhHHHHHHHhh
Q 011039 278 HYGAVQGLAAL 288 (495)
Q Consensus 278 ~YGAI~GL~aL 288 (495)
..-|+.+|..|
T Consensus 155 ~~~a~~aL~~l 165 (210)
T 4db6_A 155 LQEALWALSNI 165 (210)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66677777666
No 25
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=88.88 E-value=1.8 Score=46.17 Aligned_cols=159 Identities=11% Similarity=0.093 Sum_probs=86.5
Q ss_pred hHHHHHHHH---hhhcCCCccccchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcCCCcccchhhhhhHHHHHHHHhc
Q 011039 144 SVLFKQALV---SLATDSGLHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHIQIEPYLHQLMPSVVTCLVA 220 (495)
Q Consensus 144 ~~~r~~AL~---sL~tDpGL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~N~~L~IepYLHqLlPsvLTCll~ 220 (495)
...|++||+ .+.++..++.+++.+..|+.+ .|...-..+++.+..+..+ ..+.....++.++..+-
T Consensus 332 ~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~------~d~~~r~~~v~aI~~la~~----~~~~~~~~v~~Ll~ll~- 400 (591)
T 2vgl_B 332 IYVKLEKLDIMIRLASQANIAQVLAELKEYATE------VDVDFVRKAVRAIGRCAIK----VEQSAERCVSTLLDLIQ- 400 (591)
T ss_dssp HHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTS------SCHHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhc------CCHHHHHHHHHHHHHHHHh----ChhHHHHHHHHHHHHHc-
Confidence 344555543 345566666666666655533 1333333344444444433 12333445555554441
Q ss_pred cccCCCCCCcchHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCchhhhHHHHHHHhhCHHHHHHhhccC
Q 011039 221 KRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGPNVVRLLLLPN 300 (495)
Q Consensus 221 k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~sy~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~lllP~ 300 (495)
+....+|+.+...+..|++++.. ++..++..|.+.+-+- .....+..+++.|.++|... ++
T Consensus 401 --------~~~~~v~~e~i~~l~~ii~~~p~----~~~~~v~~L~~~l~~~-~~~~~~~~~~wilGey~~~~------~~ 461 (591)
T 2vgl_B 401 --------TKVNYVVQEAIVVIRDIFRKYPN----KYESIIATLCENLDSL-DEPDARAAMIWIVGEYAERI------DN 461 (591)
T ss_dssp --------TCCHHHHHHHHHHHHHHHHHSCS----SCCTTHHHHHHTTTTC-CSHHHHHHHHHHHHTTCTTC------TT
T ss_pred --------ccchHHHHHHHHHHHHHHHHCcc----hHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHcccccc------cC
Confidence 12346778888888888887544 4455666666666432 33345778888898888643 23
Q ss_pred hHHHHHhhhHhHhhhhhhhhhhhhHHHHHHHHHHHHHHHhHh
Q 011039 301 LGPYLSLLEPEMLLEKQKNEVKRHEAWRVYGALLQAAGQCIY 342 (495)
Q Consensus 301 L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~aLl~A~g~~~~ 342 (495)
...+++.+-..+. .+-..|+.+++.|+..+..
T Consensus 462 ~~~~l~~l~~~~~----------~~~~~vr~~~l~a~~Kl~~ 493 (591)
T 2vgl_B 462 ADELLESFLEGFH----------DESTQVQLTLLTAIVKLFL 493 (591)
T ss_dssp HHHHHHHHSTTCS----------SSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhc----------cCCHHHHHHHHHHHHHHHh
Confidence 3333333322211 1224577788888887765
No 26
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=88.84 E-value=1.5 Score=39.48 Aligned_cols=111 Identities=13% Similarity=0.070 Sum_probs=69.2
Q ss_pred ccchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcC-CCcccchhhhhhHHHHHHHHhccccCCCCCCcchHHHHHHHH
Q 011039 162 PLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQN-PHIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAK 240 (495)
Q Consensus 162 qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~N-~~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~ 240 (495)
..+|.++.++.+ .+.......+..+..|..+ +...-...-+..+|.++.++- ++...+|..|+.
T Consensus 44 g~i~~L~~ll~~------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~---------~~~~~v~~~a~~ 108 (252)
T 4hxt_A 44 GGVEVLVKLLTS------TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT---------STDSEVQKEAAR 108 (252)
T ss_dssp THHHHHHHHTTC------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT---------CSSHHHHHHHHH
T ss_pred CCHHHHHHHHhC------CCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHc---------CCCHHHHHHHHH
Confidence 356666666643 3456666677777777776 332222222356787777652 245799999999
Q ss_pred HHHHHHHHhCC-CCcchHHHHHHHHHHHhcCCCCCchhhhHHHHHHHhhC
Q 011039 241 LVAAICKRYGH-VYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALG 289 (495)
Q Consensus 241 lL~~I~~kf~~-sy~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG 289 (495)
.|..++..... .-.-+...++..+.+.+.+++ ......|+.+|..|.
T Consensus 109 ~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~--~~~~~~a~~~L~~l~ 156 (252)
T 4hxt_A 109 ALANIASGPDEAIKAIVDAGGVEVLVKLLTSTD--SEVQKEAARALANIA 156 (252)
T ss_dssp HHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC--HHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCC--HHHHHHHHHHHHHHH
Confidence 99999852111 001122345677777776543 667788888888883
No 27
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=88.17 E-value=10 Score=33.44 Aligned_cols=29 Identities=10% Similarity=-0.015 Sum_probs=14.1
Q ss_pred CchHHHHHHHHhhhcCCCccccchhHHHHH
Q 011039 142 SDSVLFKQALVSLATDSGLHPLVPYFTYFV 171 (495)
Q Consensus 142 ~d~~~r~~AL~sL~tDpGL~qLLPYfv~FI 171 (495)
.+...|..|+..|..-.. ...+|.++..+
T Consensus 26 ~~~~vr~~A~~~L~~~~~-~~~~~~L~~~l 54 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGD-ERAVEPLIKAL 54 (201)
T ss_dssp SCHHHHHHHHHHHHHHCC-GGGHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhcCC-hhHHHHHHHHH
Confidence 455566666655554221 23455555444
No 28
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=87.97 E-value=4.2 Score=38.70 Aligned_cols=126 Identities=18% Similarity=0.265 Sum_probs=72.8
Q ss_pred HHHHHHccCCchHHHHHHHHhhhcCCCccccchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcC---CCcccchhhhh
Q 011039 133 KITELAVSRSDSVLFKQALVSLATDSGLHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQN---PHIQIEPYLHQ 209 (495)
Q Consensus 133 kIt~all~~~d~~~r~~AL~sL~tDpGL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~N---~~L~IepYLHq 209 (495)
.+++-+++......+..|++.|-.=-........++..|.....+ +|.......+..+..++.+ ..+...+.+-.
T Consensus 106 ~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~~l~~--Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~ 183 (278)
T 4ffb_C 106 LLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPFFEK--KLPKLIAAAANCVYELMAAFGLTNVNVQTFLPE 183 (278)
T ss_dssp HHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHGGGGGC--SCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHH
T ss_pred HHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc--cCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHH
Confidence 344444544444455555544432111112223334444444332 5666666666666666665 44566677777
Q ss_pred hHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCC--------CcchHHHHHHHHHHHhc
Q 011039 210 LMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHV--------YNTLQTRLTKTLLNALL 269 (495)
Q Consensus 210 LlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~s--------y~~L~~RI~~tL~k~ll 269 (495)
+++.+..|+ + +..=.+|+-|..++..+++..|.. ..+|++-..+.|-+.|-
T Consensus 184 i~~~l~k~l-----~----d~~~~VR~aA~~l~~~ly~~~G~~~~~~~~~~l~~lkp~~~k~le~~f~ 242 (278)
T 4ffb_C 184 LLKHVPQLA-----G----HGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQVKDLHKLFA 242 (278)
T ss_dssp HGGGHHHHH-----T----CSSHHHHHHHHHHHHHHHTC-----------CTTSSCHHHHHHHHHHHS
T ss_pred HHHHHHHHH-----h----CCcHHHHHHHHHHHHHHHHHhCcchhhhhhhhhhcCCHHHHHHHHHHHH
Confidence 888777776 2 223489999999999999988743 25678877777777774
No 29
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=87.25 E-value=15 Score=34.21 Aligned_cols=132 Identities=12% Similarity=0.061 Sum_probs=74.0
Q ss_pred HHHHHHccCCchHHHHHHHHhhhcCCCccccchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcCCCcccchhhhhhHH
Q 011039 133 KITELAVSRSDSVLFKQALVSLATDSGLHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHIQIEPYLHQLMP 212 (495)
Q Consensus 133 kIt~all~~~d~~~r~~AL~sL~tDpGL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~N~~L~IepYLHqLlP 212 (495)
.+++.+- .++...|..|+..|..-. -...+|.++..+.+ .+...- ...+.+|-.=.. -...+..+++
T Consensus 27 ~L~~~L~-~~~~~vr~~A~~~L~~~~-~~~~~~~L~~~l~d------~~~~vR---~~A~~aL~~l~~--~~~~~~~l~~ 93 (280)
T 1oyz_A 27 ELFRLLD-DHNSLKRISSARVLQLRG-GQDAVRLAIEFCSD------KNYIRR---DIGAFILGQIKI--CKKCEDNVFN 93 (280)
T ss_dssp HHHHHTT-CSSHHHHHHHHHHHHHHC-CHHHHHHHHHHHTC------SSHHHH---HHHHHHHHHSCC--CTTTHHHHHH
T ss_pred HHHHHHH-cCCHHHHHHHHHHHHccC-CchHHHHHHHHHcC------CCHHHH---HHHHHHHHHhcc--ccccchHHHH
Confidence 3445443 456667777777666533 23355555554432 122211 122333321110 1223334444
Q ss_pred HHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCchhhhHHHHHHHhhCHH
Q 011039 213 SVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGPN 291 (495)
Q Consensus 213 svLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~sy~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~ 291 (495)
.+...++. +.++.+|..|+..|+.++... +...+.++..|.+.+.|+ .....+.|+.+|..+|..
T Consensus 94 ~L~~~~~~--------d~~~~vr~~a~~aL~~l~~~~----~~~~~~~~~~L~~~l~d~--~~~vR~~a~~aL~~~~~~ 158 (280)
T 1oyz_A 94 ILNNMALN--------DKSACVRATAIESTAQRCKKN----PIYSPKIVEQSQITAFDK--STNVRRATAFAISVINDK 158 (280)
T ss_dssp HHHHHHHH--------CSCHHHHHHHHHHHHHHHHHC----GGGHHHHHHHHHHHTTCS--CHHHHHHHHHHHHTC---
T ss_pred HHHHHHhc--------CCCHHHHHHHHHHHHHHhccC----CcccHHHHHHHHHHhhCC--CHHHHHHHHHHHHhcCCH
Confidence 44322222 457899999999999998654 233567788888888765 467789999999999874
No 30
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=87.12 E-value=4.3 Score=45.64 Aligned_cols=148 Identities=13% Similarity=0.041 Sum_probs=93.0
Q ss_pred HHHhhhcCCCccccchhHHHHHHHhhhc----CCCCHHHHHHHHHHHHHHhcC------------CCcccchhhh-hhHH
Q 011039 150 ALVSLATDSGLHPLVPYFTYFVADEVSR----GLNNYSLLFALMRVVWNLLQN------------PHIQIEPYLH-QLMP 212 (495)
Q Consensus 150 AL~sL~tDpGL~qLLPYfv~FI~e~V~~----nl~nl~~L~~llrmv~ALl~N------------~~L~IepYLH-qLlP 212 (495)
.|..|...-+ ..++|-+..|+.+.+.. ...|+......+.++.|+..+ +.+.+++++. .++|
T Consensus 384 ~L~~l~~~~~-~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p 462 (960)
T 1wa5_C 384 FLKELKEKNE-VLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAP 462 (960)
T ss_dssp HHHHHHHHCH-HHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHH
T ss_pred HHHHHHHHcc-hhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHH
Confidence 3445555444 56666666666555542 135677777788888888654 2224555543 2344
Q ss_pred HHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCchhhhHHHHHHHhhCH--
Q 011039 213 SVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGP-- 290 (495)
Q Consensus 213 svLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~sy~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~-- 290 (495)
-+ .. +.+.|-.+|..|..+|+.++..+. +..-..++..+.+.|.|+ +...+--|..+|..|-.
T Consensus 463 ~l---------~~-~~~~~p~vr~~a~~~lg~~~~~~~---~~~l~~~l~~l~~~L~d~--~~~V~~~A~~Al~~~~~~~ 527 (960)
T 1wa5_C 463 DL---------TS-NNIPHIILRVDAIKYIYTFRNQLT---KAQLIELMPILATFLQTD--EYVVYTYAAITIEKILTIR 527 (960)
T ss_dssp HH---------HC-SSCSCHHHHHHHHHHHHHTGGGSC---HHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHTTCB
T ss_pred Hh---------cC-CCCCCceehHHHHHHHHHHHhhCC---HHHHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHHHhcc
Confidence 22 11 112477899999999999887652 456777888888888876 45555666666666543
Q ss_pred --------HHHHHhhccChHHHHHhhhHhHh
Q 011039 291 --------NVVRLLLLPNLGPYLSLLEPEML 313 (495)
Q Consensus 291 --------~aVr~lllP~L~~y~~~Le~~l~ 313 (495)
+.-+..+.|+++.++..|-..+.
T Consensus 528 ~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~ 558 (960)
T 1wa5_C 528 ESNTSPAFIFHKEDISNSTEILLKNLIALIL 558 (960)
T ss_dssp SCSSSCCBSSCGGGTTTTHHHHHHHHHHHHH
T ss_pred cccccccccccHHHhhhhHHHHHHHHHHHHH
Confidence 11356688999999988776654
No 31
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=86.86 E-value=11 Score=33.47 Aligned_cols=50 Identities=26% Similarity=0.312 Sum_probs=30.8
Q ss_pred CcchHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCchhhhHHHHHHHhhCH
Q 011039 229 DNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGP 290 (495)
Q Consensus 229 ~~hw~LRd~AA~lL~~I~~kf~~sy~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~ 290 (495)
+.+|.+|..|+..|+.+.. +..+..|.+.+.|+ .....+.|+.+|..+|.
T Consensus 123 d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 123 DEDWFVRIAAAFALGEIGD----------ERAVEPLIKALKDE--DGWVRQSAADALGEIGG 172 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHCS
T ss_pred CCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCc
Confidence 4567777777777776621 13444555555443 35667777777777765
No 32
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=86.40 E-value=4.3 Score=41.89 Aligned_cols=111 Identities=12% Similarity=0.059 Sum_probs=73.1
Q ss_pred ccchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcCC-CcccchhhhhhHHHHHHHHhccccCCCCCCcchHHHHHHHH
Q 011039 162 PLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNP-HIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAK 240 (495)
Q Consensus 162 qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~N~-~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~ 240 (495)
..+|.++..+.+ .+.......+..+..|..+. ...-..+...++|.++.++- +....+|..|+.
T Consensus 215 ~~l~~L~~ll~~------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~---------~~d~~v~~~a~~ 279 (530)
T 1wa5_B 215 NAMEPILGLFNS------NKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY---------SMDTETLVDACW 279 (530)
T ss_dssp TCHHHHHHGGGS------CCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTT---------CCCHHHHHHHHH
T ss_pred CcHHHHHHHhcc------CCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHc---------CCCHHHHHHHHH
Confidence 567777777654 46677777888888888774 22234566788888887752 234689999999
Q ss_pred HHHHHHHHhCCCCc-chHHHHHHHHHHHhcCCCCCchhhhHHHHHHHhhC
Q 011039 241 LVAAICKRYGHVYN-TLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALG 289 (495)
Q Consensus 241 lL~~I~~kf~~sy~-~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG 289 (495)
.|+.++........ -+...++..|...+.++ .......|+..|..+.
T Consensus 280 ~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~--~~~v~~~a~~~L~~l~ 327 (530)
T 1wa5_B 280 AISYLSDGPQEAIQAVIDVRIPKRLVELLSHE--STLVQTPALRAVGNIV 327 (530)
T ss_dssp HHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCS--CHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCC--ChhhHHHHHHHHHHHH
Confidence 99999853211000 12224566777777654 3556677888888774
No 33
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=86.30 E-value=14 Score=34.37 Aligned_cols=131 Identities=11% Similarity=0.006 Sum_probs=62.4
Q ss_pred HHHHHHHHccCCchHHHHHHHHhhhcCCCccccchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhc-CCCcccchhhhh
Q 011039 131 FDKITELAVSRSDSVLFKQALVSLATDSGLHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQ-NPHIQIEPYLHQ 209 (495)
Q Consensus 131 f~kIt~all~~~d~~~r~~AL~sL~tDpGL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~-N~~L~IepYLHq 209 (495)
+..+.+.+-+ .+...|..|...|..-..-..-+|-++..+.+..... .+...-...+.....+-. | ..+...
T Consensus 56 ~~~L~~~l~d-~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~d-~~~~vr~~a~~aL~~l~~~~-----~~~~~~ 128 (280)
T 1oyz_A 56 VRLAIEFCSD-KNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALND-KSACVRATAIESTAQRCKKN-----PIYSPK 128 (280)
T ss_dssp HHHHHHHHTC-SSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHHHHC-----GGGHHH
T ss_pred HHHHHHHHcC-CCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhccC-----CcccHH
Confidence 4445555443 4556677766666543222222333333332211111 232222222222222221 1 123345
Q ss_pred hHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCchhhhHHHHHHHhhC
Q 011039 210 LMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALG 289 (495)
Q Consensus 210 LlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~sy~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG 289 (495)
++|.++.++ .+.++.+|..|+..|+.+.. +..+..|.+.+.|++ ....+.|+.+|..+|
T Consensus 129 ~~~~L~~~l---------~d~~~~vR~~a~~aL~~~~~----------~~~~~~L~~~l~d~~--~~vr~~a~~aL~~~~ 187 (280)
T 1oyz_A 129 IVEQSQITA---------FDKSTNVRRATAFAISVIND----------KATIPLLINLLKDPN--GDVRNWAAFAININK 187 (280)
T ss_dssp HHHHHHHHT---------TCSCHHHHHHHHHHHHTC-------------CCHHHHHHHHTCSS--HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHh---------hCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHcCCC--HHHHHHHHHHHHhhc
Confidence 566555553 24567788888887776543 124455556665543 346677777777775
No 34
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=86.28 E-value=8 Score=39.88 Aligned_cols=111 Identities=11% Similarity=0.067 Sum_probs=70.1
Q ss_pred cccchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcCCCcccc-hhhhhhHHHHHHHHhccccCCCCCCcchHHHHHHH
Q 011039 161 HPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHIQIE-PYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTA 239 (495)
Q Consensus 161 ~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~N~~L~Ie-pYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA 239 (495)
...+|.|+..+.+ .+.......+..+..|..+..-+-+ ..-+.++|.++.++-. ....+|..|+
T Consensus 172 ~g~i~~Lv~lL~~------~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~---------~~~~v~~~a~ 236 (530)
T 1wa5_B 172 ADAVPLFIQLLYT------GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS---------NKPSLIRTAT 236 (530)
T ss_dssp TTCHHHHHHHHHH------CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS---------CCHHHHHHHH
T ss_pred CCCHHHHHHHHcC------CCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc---------CCHHHHHHHH
Confidence 3568888888865 3556666666777777655321111 1124577877777522 3568999999
Q ss_pred HHHHHHHHHhCC-CCcchHHHHHHHHHHHhcCCCCCchhhhHHHHHHHhh
Q 011039 240 KLVAAICKRYGH-VYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAAL 288 (495)
Q Consensus 240 ~lL~~I~~kf~~-sy~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aL 288 (495)
..|+.+|..... .-......++..|.+.+.++. .....-|+.+|..|
T Consensus 237 ~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d--~~v~~~a~~~L~~L 284 (530)
T 1wa5_B 237 WTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMD--TETLVDACWAISYL 284 (530)
T ss_dssp HHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCC--HHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCC--HHHHHHHHHHHHHH
Confidence 999999975422 222334556777888776543 45666677777766
No 35
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=86.06 E-value=6.2 Score=43.81 Aligned_cols=88 Identities=17% Similarity=0.181 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhcCCCcccchhhhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHH
Q 011039 186 FALMRVVWNLLQNPHIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLL 265 (495)
Q Consensus 186 ~~llrmv~ALl~N~~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~sy~~L~~RI~~tL~ 265 (495)
..+-++.+-+-.|+ .|+..+++.++.++- + -.+|..|+..+..+|+.++.....--+.|+..|.
T Consensus 511 ~~l~~~~~~l~~~~-----~~l~~vl~~l~~~l~-----~------~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~ 574 (963)
T 2x19_B 511 FTIGALSEWLADHP-----VMINSVLPLVLHALG-----N------PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQ 574 (963)
T ss_dssp HHHHHTHHHHHHCH-----HHHTTTHHHHHHHTT-----C------GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCH-----HHHHHHHHHHHHHhC-----C------chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 33445555454443 677777887777751 1 2689999999999999887654444577888888
Q ss_pred HHhcCCCC---CchhhhHHHHHHHh-hC
Q 011039 266 NALLDPKR---ALTQHYGAVQGLAA-LG 289 (495)
Q Consensus 266 k~llDp~k---~l~t~YGAI~GL~a-LG 289 (495)
+.+..+.- .....|.||..+.. +|
T Consensus 575 ~~l~~~~~~~~~~~~~~eai~~i~~~~~ 602 (963)
T 2x19_B 575 DVLMKQIHKTSQCMWLMQALGFLLSALQ 602 (963)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHTTSC
T ss_pred HHhccCCCChHHHHHHHHHHHHHHhcCC
Confidence 77764332 23344666666543 45
No 36
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=85.86 E-value=6.9 Score=38.58 Aligned_cols=139 Identities=14% Similarity=0.194 Sum_probs=83.2
Q ss_pred HHHHHccCCchHHHHH---HHHhhhcCC--C-----ccccchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcCCCccc
Q 011039 134 ITELAVSRSDSVLFKQ---ALVSLATDS--G-----LHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHIQI 203 (495)
Q Consensus 134 It~all~~~d~~~r~~---AL~sL~tDp--G-----L~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~N~~L~I 203 (495)
+++.+.+..+...+.. +|..|..+. . +..++|.++..+.+ .|..........+..|..+..-..
T Consensus 154 L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~------~~~~v~~~a~~~L~~l~~~~~~~~ 227 (450)
T 2jdq_A 154 LLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFV------SDTDVLADACWALSYLSDGPNDKI 227 (450)
T ss_dssp HHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTC------CCHHHHHHHHHHHHHHTSSSHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHcc------CCHHHHHHHHHHHHHHHCCCcHHH
Confidence 4444332234555654 445555442 2 35677887777642 355666667777777776543222
Q ss_pred chhh-hhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCCc-chHHHHHHHHHHHhcCCCCCchhhhHH
Q 011039 204 EPYL-HQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYN-TLQTRLTKTLLNALLDPKRALTQHYGA 281 (495)
Q Consensus 204 epYL-HqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~sy~-~L~~RI~~tL~k~llDp~k~l~t~YGA 281 (495)
...+ ..++|.++.++- +..|.+|..|+..|+.|+........ -+...++..|.+.+.++ ....+.-|
T Consensus 228 ~~~~~~~~i~~L~~ll~---------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~vr~~a 296 (450)
T 2jdq_A 228 QAVIDAGVCRRLVELLM---------HNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSP--KESIKKEA 296 (450)
T ss_dssp HHHHHTTTHHHHHHHTT---------CSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCS--SHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHC---------CCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCC--CHHHHHHH
Confidence 2222 357787777652 34689999999999999753221100 12234677778887765 45667778
Q ss_pred HHHHHhhC
Q 011039 282 VQGLAALG 289 (495)
Q Consensus 282 I~GL~aLG 289 (495)
+..|..+.
T Consensus 297 ~~~L~~l~ 304 (450)
T 2jdq_A 297 CWTISNIT 304 (450)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 88888874
No 37
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=85.73 E-value=3.1 Score=48.04 Aligned_cols=144 Identities=8% Similarity=0.011 Sum_probs=100.9
Q ss_pred ccchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcCCCcc-cchhhhhhHHHHHHHHhccccCCCCCCcchHHHHHHHH
Q 011039 162 PLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHIQ-IEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAK 240 (495)
Q Consensus 162 qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~N~~L~-IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~ 240 (495)
.+++.+...+.+.+...-.++..+...+-.+.|+...+.-. ..+++++++|.++.++=.++. .+++-.+|+-++-
T Consensus 447 ~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~----~d~k~~v~~t~~~ 522 (1023)
T 4hat_C 447 DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRG----KDNKAVVASDIMY 522 (1023)
T ss_dssp HHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCS----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhcccc----CcchHHHHHHHHH
Confidence 46666677776666654467999999999999999877654 679999999988886543321 2455578899999
Q ss_pred HHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCchhhhHHHHHHHhhCHHHHHHhh-------ccChHHHHHhhhHhH
Q 011039 241 LVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGPNVVRLLL-------LPNLGPYLSLLEPEM 312 (495)
Q Consensus 241 lL~~I~~kf~~sy~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~ll-------lP~L~~y~~~Le~~l 312 (495)
+|+++++=+.. .+..-+.+++.+.+.+.|++. ...-=|..+|..|..+.-+.++ -|++..+...+....
T Consensus 523 ~lGry~~wl~~-~~~~L~~vl~~L~~~l~~~~~--~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~ 598 (1023)
T 4hat_C 523 VVGQYPRFLKA-HWNFLRTVILKLFEFMHETHE--GVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTT 598 (1023)
T ss_dssp HHHTCHHHHHH-CHHHHHHHHHHHHHHTTCSCH--HHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHH
T ss_pred HHHHHHHHHhc-cHHHHHHHHHHHHHHhhcCCH--HHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHH
Confidence 99998876643 355566777778888866543 2333477788888777665554 477777776666544
No 38
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=85.27 E-value=11 Score=40.37 Aligned_cols=139 Identities=12% Similarity=0.131 Sum_probs=84.2
Q ss_pred HHHHHHHHHccCCchHHHHHHHH---hhhcCCCccccchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcCCCcccchh
Q 011039 130 YFDKITELAVSRSDSVLFKQALV---SLATDSGLHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHIQIEPY 206 (495)
Q Consensus 130 Yf~kIt~all~~~d~~~r~~AL~---sL~tDpGL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~N~~L~IepY 206 (495)
|+..|... +..+|...|+.||+ .|.+..-+..++..|..|+.+ .+.+.-..+.+.+..+..+= .+-
T Consensus 351 ~~~~i~~~-l~d~d~~Ir~~alelL~~l~~~~nv~~iv~eL~~~l~~------~d~e~r~~~v~~I~~la~k~----~~~ 419 (618)
T 1w63_A 351 HRSTIVDC-LKDLDVSIKRRAMELSFALVNGNNIRGMMKELLYFLDS------CEPEFKADCASGIFLAAEKY----APS 419 (618)
T ss_dssp GHHHHHHG-GGSSCHHHHHHHHHHHHHHCCSSSTHHHHHHHHHHHHH------CCHHHHHHHHHHHHHHHHSS----CCC
T ss_pred HHHHHHHH-ccCCChhHHHHHHHHHHHHcccccHHHHHHHHHHHHHh------CCHHHHHHHHHHHHHHHHHh----Ccc
Confidence 44555544 44456677777775 556777788899999999876 34455555666666665541 122
Q ss_pred hhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCchhhhHHHHHHH
Q 011039 207 LHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLA 286 (495)
Q Consensus 207 LHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~sy~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~ 286 (495)
.+..++.++.++-.. +. ..++.+...+..|+++ ++.++..++..|.+.+.++...-...-.+++.|.
T Consensus 420 ~~~~v~~ll~lL~~~--~~-------~v~~~~~~~l~~ii~~----~p~l~~~~v~~L~~~l~~~~~~~~~~~~~~wilG 486 (618)
T 1w63_A 420 KRWHIDTIMRVLTTA--GS-------YVRDDAVPNLIQLITN----SVEMHAYTVQRLYKAILGDYSQQPLVQVAAWCIG 486 (618)
T ss_dssp HHHHHHHHHHHHHHT--GG-------GSCSSHHHHHHHHHHH----SCSTHHHHHHHHHHHHHHCCSCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc--cc-------hhHHHHHHHHHHHHhc----ChhHHHHHHHHHHHHHhcccccHHHHHHHHHHHh
Confidence 344455555444221 11 1233345556667766 5678888999999988754333333346777788
Q ss_pred hhCHHH
Q 011039 287 ALGPNV 292 (495)
Q Consensus 287 aLG~~a 292 (495)
++|...
T Consensus 487 Ey~~~i 492 (618)
T 1w63_A 487 EYGDLL 492 (618)
T ss_dssp HHHHHH
T ss_pred hhHHHh
Confidence 877644
No 39
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=85.11 E-value=16 Score=32.21 Aligned_cols=123 Identities=17% Similarity=0.133 Sum_probs=73.0
Q ss_pred HHHHHHHHccCCchHHHHHHHHhhhcCCCccccchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcCCCcccchhhhhh
Q 011039 131 FDKITELAVSRSDSVLFKQALVSLATDSGLHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHIQIEPYLHQL 210 (495)
Q Consensus 131 f~kIt~all~~~d~~~r~~AL~sL~tDpGL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~N~~L~IepYLHqL 210 (495)
...+.+.+. ..+...|..|+..|..-. -...+|.++..+.+ .+...-... +++|-.... ...
T Consensus 47 ~~~L~~~l~-~~~~~vr~~a~~~L~~~~-~~~~~~~L~~~l~d------~~~~vr~~a---~~aL~~~~~-------~~~ 108 (201)
T 3ltj_A 47 VEPLIKALK-DEDAWVRRAAADALGQIG-DERAVEPLIKALKD------EDGWVRQSA---AVALGQIGD-------ERA 108 (201)
T ss_dssp HHHHHHHTT-CSSHHHHHHHHHHHHHHC-CGGGHHHHHHHTTC------SSHHHHHHH---HHHHHHHCC-------GGG
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHHHhhC-CHHHHHHHHHHHcC------CCHHHHHHH---HHHHHHhCc-------HHH
Confidence 455565554 345667777776665422 12445666554432 233322222 333322111 235
Q ss_pred HHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCchhhhHHHHHHHhhCH
Q 011039 211 MPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGP 290 (495)
Q Consensus 211 lPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~sy~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~ 290 (495)
+|.++.++ .+.+|.+|..|+..|+.+.. +..+..|.+.+.|+ .....+.|+.+|..+|.
T Consensus 109 ~~~L~~~l---------~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~--~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 109 VEPLIKAL---------KDEDWFVRIAAAFALGEIGD----------ERAVEPLIKALKDE--DGWVRQSAADALGEIGG 167 (201)
T ss_dssp HHHHHHHT---------TCSSHHHHHHHHHHHHHHTC----------GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHH---------cCCCHHHHHHHHHHHHHhCC----------HHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCc
Confidence 66666654 25679999999999998842 34556677777664 56788999999999986
Q ss_pred HH
Q 011039 291 NV 292 (495)
Q Consensus 291 ~a 292 (495)
..
T Consensus 168 ~~ 169 (201)
T 3ltj_A 168 ER 169 (201)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 40
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=85.03 E-value=7.3 Score=38.39 Aligned_cols=139 Identities=11% Similarity=0.064 Sum_probs=84.4
Q ss_pred HHHHHHccCCchHHHHHHH---HhhhcCCC-c------cccchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcCC--C
Q 011039 133 KITELAVSRSDSVLFKQAL---VSLATDSG-L------HPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNP--H 200 (495)
Q Consensus 133 kIt~all~~~d~~~r~~AL---~sL~tDpG-L------~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~N~--~ 200 (495)
.+.+.+. .++...+..|+ ..|..+.. . ...+|.++.++.+ -.+.......+..+..|..+. .
T Consensus 111 ~L~~lL~-~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~-----~~~~~v~~~a~~~L~~l~~~~~~~ 184 (450)
T 2jdq_A 111 IFIELLS-SEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSK-----QNRLTMTRNAVWALSNLCRGKSPP 184 (450)
T ss_dssp HHHHHTT-CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTS-----CCCHHHHHHHHHHHHHHHCCSSSC
T ss_pred HHHHHHc-CCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcC-----CCCHHHHHHHHHHHHHHhCCCCCC
Confidence 3444443 34555666554 44554431 0 2467888777652 135666777788888888764 3
Q ss_pred cccchhhhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCC-cchHHHHHHHHHHHhcCCCCCchhhh
Q 011039 201 IQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVY-NTLQTRLTKTLLNALLDPKRALTQHY 279 (495)
Q Consensus 201 L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~sy-~~L~~RI~~tL~k~llDp~k~l~t~Y 279 (495)
.. ..++..++|.++.++- +++..+|..|+..|+.++....... .-....++..|.+.+.++ ......
T Consensus 185 ~~-~~~~~~~l~~L~~~l~---------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~ 252 (450)
T 2jdq_A 185 PE-FAKVSPCLNVLSWLLF---------VSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHN--DYKVVS 252 (450)
T ss_dssp CC-GGGTGGGHHHHHHHTT---------CCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCS--CHHHHH
T ss_pred CC-HHHHHHHHHHHHHHHc---------cCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCC--chhHHH
Confidence 33 3445889998888762 2346899999999999975311100 011234566777777643 456677
Q ss_pred HHHHHHHhhC
Q 011039 280 GAVQGLAALG 289 (495)
Q Consensus 280 GAI~GL~aLG 289 (495)
.|+..|..+.
T Consensus 253 ~a~~~L~~l~ 262 (450)
T 2jdq_A 253 PALRAVGNIV 262 (450)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 7888888774
No 41
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=83.74 E-value=3.4 Score=37.20 Aligned_cols=141 Identities=16% Similarity=0.114 Sum_probs=82.9
Q ss_pred HHHHHHHHccCCchHHHHHH---HHhhhcC-CCcc------ccchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHh-cCC
Q 011039 131 FDKITELAVSRSDSVLFKQA---LVSLATD-SGLH------PLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLL-QNP 199 (495)
Q Consensus 131 f~kIt~all~~~d~~~r~~A---L~sL~tD-pGL~------qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl-~N~ 199 (495)
...+++.+.+ ++...+..| |..|..+ +... ..+|.++.++.+ .+.......+..+..|. .++
T Consensus 46 i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~------~~~~v~~~a~~~L~~l~~~~~ 118 (252)
T 4hxt_A 46 VEVLVKLLTS-TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS------TDSEVQKEAARALANIASGPD 118 (252)
T ss_dssp HHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC------SSHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHHhC-CCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcC------CCHHHHHHHHHHHHHHHcCCH
Confidence 3344544443 345555544 4455544 2211 346666666642 45667777788888888 444
Q ss_pred CcccchhhhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHhcCCCCCchhh
Q 011039 200 HIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHV-YNTLQTRLTKTLLNALLDPKRALTQH 278 (495)
Q Consensus 200 ~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~s-y~~L~~RI~~tL~k~llDp~k~l~t~ 278 (495)
...-.-.-+..+|.++.++- ++++.+|..|+..|..|+...... ..-+...++..|.+.+.++ .....
T Consensus 119 ~~~~~~~~~~~i~~L~~~l~---------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~ 187 (252)
T 4hxt_A 119 EAIKAIVDAGGVEVLVKLLT---------STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST--DSEVQ 187 (252)
T ss_dssp HHHHHHHHTTHHHHHHHHTT---------CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHc---------CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCC--CHHHH
Confidence 43333333457787777752 345899999999999998632110 1122334677788877643 35667
Q ss_pred hHHHHHHHhhC
Q 011039 279 YGAVQGLAALG 289 (495)
Q Consensus 279 YGAI~GL~aLG 289 (495)
..|+..|..+.
T Consensus 188 ~~a~~~L~~l~ 198 (252)
T 4hxt_A 188 KEAARALANIA 198 (252)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 77777777773
No 42
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=83.61 E-value=2 Score=39.28 Aligned_cols=109 Identities=14% Similarity=0.157 Sum_probs=72.1
Q ss_pred cchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcCCCcccchhh-hhhHHHHHHHHhccccCCCCCCcchHHHHHHHHH
Q 011039 163 LVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHIQIEPYL-HQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKL 241 (495)
Q Consensus 163 LLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~N~~L~IepYL-HqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~l 241 (495)
.+|.++.++.+ .+.......+..+..|..++...++..+ ...+|.++.++- +.++.+|..|+..
T Consensus 97 ~i~~L~~lL~~------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~---------~~~~~v~~~a~~~ 161 (252)
T 4db8_A 97 ALPALVQLLSS------PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS---------SPNEQILQEALWA 161 (252)
T ss_dssp HHHHHHHGGGC------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGG---------CSCHHHHHHHHHH
T ss_pred CHHHHHHHHcC------CCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHh---------CCCHHHHHHHHHH
Confidence 56666665543 4567777788888888888776633333 458888887761 3467999999999
Q ss_pred HHHHHHHhCCCC-cchHHHHHHHHHHHhcCCCCCchhhhHHHHHHHhh
Q 011039 242 VAAICKRYGHVY-NTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAAL 288 (495)
Q Consensus 242 L~~I~~kf~~sy-~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aL 288 (495)
|..++....... .-+...++..|.+.+.++ ......-|+..|..|
T Consensus 162 L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l 207 (252)
T 4db8_A 162 LSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNI 207 (252)
T ss_dssp HHHHTTSCHHHHHHHHHTTCHHHHHHGGGCS--SHHHHHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHCCCHHHHHHHHCCC--CHHHHHHHHHHHHHH
Confidence 999985321100 012234566777777755 556677778888777
No 43
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=83.25 E-value=3 Score=46.90 Aligned_cols=104 Identities=7% Similarity=0.070 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHhcCCCc--ccc--hhhhhhH-HHHHHHHhccc--c---CCCC---------CCcchHHHHHHHHHH
Q 011039 182 YSLLFALMRVVWNLLQNPHI--QIE--PYLHQLM-PSVVTCLVAKR--L---GNRL---------ADNHWELRDFTAKLV 242 (495)
Q Consensus 182 l~~L~~llrmv~ALl~N~~L--~Ie--pYLHqLl-PsvLTCll~k~--l---~~~~---------~~~hw~LRd~AA~lL 242 (495)
-......+.+..+++..+.. .+. +|+.+|+ +.++.++.-+. . ...+ .++.|.+|..|+.+|
T Consensus 306 ~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L 385 (960)
T 1wa5_C 306 DILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFL 385 (960)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHH
Confidence 35566678888888877653 223 8888888 77777774321 1 1111 135679999999999
Q ss_pred HHHHHHhCCCCcchHHHHHHHHHHHh----cCCCCCchhhhHHHHHHHhh
Q 011039 243 AAICKRYGHVYNTLQTRLTKTLLNAL----LDPKRALTQHYGAVQGLAAL 288 (495)
Q Consensus 243 ~~I~~kf~~sy~~L~~RI~~tL~k~l----lDp~k~l~t~YGAI~GL~aL 288 (495)
..++..|+. .+-+-++..+...| .++......+.+|+..+.++
T Consensus 386 ~~l~~~~~~---~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algai 432 (960)
T 1wa5_C 386 KELKEKNEV---LVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTAL 432 (960)
T ss_dssp HHHHHHCHH---HHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHH
T ss_pred HHHHHHcch---hHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHH
Confidence 999999873 23333334333333 34455677889999988887
No 44
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=82.67 E-value=19 Score=31.98 Aligned_cols=122 Identities=16% Similarity=0.102 Sum_probs=72.7
Q ss_pred HHHHHHHHccCCchHHHHHHHHhhhcCCCccccchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcCCCcccchhhhhh
Q 011039 131 FDKITELAVSRSDSVLFKQALVSLATDSGLHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHIQIEPYLHQL 210 (495)
Q Consensus 131 f~kIt~all~~~d~~~r~~AL~sL~tDpGL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~N~~L~IepYLHqL 210 (495)
...+++.+- ..+...|..|+..|..-.. ...+|.++..+.+ .+...-... +++|-.-.. ...
T Consensus 21 ~~~L~~~L~-~~~~~vR~~A~~~L~~~~~-~~~~~~L~~~l~~------~~~~vr~~a---~~aL~~~~~-------~~~ 82 (211)
T 3ltm_A 21 VEMYIKNLQ-DDSYYVRRAAAYALGKIGD-ERAVEPLIKALKD------EDAWVRRAA---ADALGQIGD-------ERA 82 (211)
T ss_dssp HHHHHHHTT-CSSHHHHHHHHHHHHHHCC-GGGHHHHHHHTTC------SCHHHHHHH---HHHHHHHCC-------GGG
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHcC------CCHHHHHHH---HHHHHhhCC-------HHH
Confidence 344555544 4566677777776665322 3566666665543 233322222 333322111 245
Q ss_pred HHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCchhhhHHHHHHHhhCH
Q 011039 211 MPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGP 290 (495)
Q Consensus 211 lPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~sy~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~ 290 (495)
+|.++.++ .+.++.+|..|+..|+.+.. +.....|.+.+.| ........|+.+|..+|.
T Consensus 83 ~~~L~~~l---------~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d--~~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 83 VEPLIKAL---------KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKD--EDWFVRIAAAFALGEIGD 141 (211)
T ss_dssp HHHHHHHT---------TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTC--SSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHH---------cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhC--CCHHHHHHHHHHHHHcCC
Confidence 66666664 24568999999999998742 2345566666654 456788999999999986
Q ss_pred H
Q 011039 291 N 291 (495)
Q Consensus 291 ~ 291 (495)
.
T Consensus 142 ~ 142 (211)
T 3ltm_A 142 E 142 (211)
T ss_dssp G
T ss_pred H
Confidence 3
No 45
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=80.81 E-value=20 Score=40.68 Aligned_cols=124 Identities=10% Similarity=0.071 Sum_probs=71.4
Q ss_pred ccccchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhc----CCCc--ccchhhhhhHHHHHHHHhccc----cCCC---
Q 011039 160 LHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQ----NPHI--QIEPYLHQLMPSVVTCLVAKR----LGNR--- 226 (495)
Q Consensus 160 L~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~----N~~L--~IepYLHqLlPsvLTCll~k~----l~~~--- 226 (495)
..+.+..++.++-.-.. + .+...-...+.+...+.+ .+.. ...+|+.+|++.++..+.-.. ..+.
T Consensus 338 ~~~~l~~~l~~ll~~~~-~-~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e 415 (1049)
T 3m1i_C 338 LRELLLNAHQYLIQLSK-I-EERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGE 415 (1049)
T ss_dssp GHHHHHHHHHHHHHHHT-S-SCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSC
T ss_pred hHHHHHHHHHHHHHHHc-C-CcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCc
Confidence 44444455555544222 2 344444444444444444 3332 445677777776665542211 0000
Q ss_pred ------CCCcchHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCchhhhHHHHHHHhh
Q 011039 227 ------LADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAAL 288 (495)
Q Consensus 227 ------~~~~hw~LRd~AA~lL~~I~~kf~~sy~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aL 288 (495)
..+|.|.+|..++.+|..+|..++. .+-+-+...+.+.+.++..+....-+|+.++.++
T Consensus 416 ~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~---~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsi 480 (1049)
T 3m1i_C 416 IVREFVKESDTIQLYKSEREVLVYLTHLNVI---DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSI 480 (1049)
T ss_dssp EEECSSCCHHHHHHHHHHHHHHHHHHHHCHH---HHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHT
T ss_pred chHhhhccchHHHHHHHHHHHHHHHHccCHH---HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 0234689999999999999976643 3445556666666554556677888999999988
No 46
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=80.37 E-value=36 Score=33.34 Aligned_cols=159 Identities=11% Similarity=0.041 Sum_probs=92.9
Q ss_pred ccchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcCCCcccchhh-hhhHHHHHHHHhccccCCCCCCcchHHHHHHHH
Q 011039 162 PLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHIQIEPYL-HQLMPSVVTCLVAKRLGNRLADNHWELRDFTAK 240 (495)
Q Consensus 162 qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~N~~L~IepYL-HqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~ 240 (495)
..+|.|++.+... .+.......+..+..|+.|..-..+..+ +..+|.++.++-. .+..+|..|+.
T Consensus 124 g~l~~Ll~LL~~~-----~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~---------~d~~v~~~A~~ 189 (296)
T 1xqr_A 124 GALRKLLRLLDRD-----ACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQ---------QVQKLKVKSAF 189 (296)
T ss_dssp THHHHHHHHHHHC-----SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHS---------SCHHHHHHHHH
T ss_pred CCHHHHHHHHccC-----CCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcC---------CCHHHHHHHHH
Confidence 4678888887642 2345556677777778876544444333 5788888887622 34689999999
Q ss_pred HHHHHHHHhCCCC-cchHHHHHHHHHHHhcCCCCCchhhhHHHHHH---HhhCHHHHHHhhccChHHHHHhhhHhHhhhh
Q 011039 241 LVAAICKRYGHVY-NTLQTRLTKTLLNALLDPKRALTQHYGAVQGL---AALGPNVVRLLLLPNLGPYLSLLEPEMLLEK 316 (495)
Q Consensus 241 lL~~I~~kf~~sy-~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL---~aLG~~aVr~lllP~L~~y~~~Le~~l~~~~ 316 (495)
+|+.++......- .-+..-++..|.+.|.++. ...+.=|+.+| ...++.+++.+--+. ..|...|+..+.
T Consensus 190 aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d--~~v~~~al~aL~~l~~~~~~~~~~~~~~~-~~l~~lL~~~~~--- 263 (296)
T 1xqr_A 190 LLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEH--SPFHEHVLGALCSLVTDFPQGVRECREPE-LGLEELLRHRCQ--- 263 (296)
T ss_dssp HHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCC--STHHHHHHHHHHHHHTTCHHHHHHHHCGG-GCHHHHHHHHHH---
T ss_pred HHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCC--hhHHHHHHHHHHHHHhCChhHHHHHhccH-HHHHHHHHHHHH---
Confidence 9999998622110 1123346677777776553 34444444444 444677776653322 224444443321
Q ss_pred hhhhhhhhH-HHHHHHHHHHHHHHhHhh
Q 011039 317 QKNEVKRHE-AWRVYGALLQAAGQCIYD 343 (495)
Q Consensus 317 ~~~~~~r~e-a~~v~~aLl~A~g~~~~~ 343 (495)
..+.+| ...+|.....-+.+|+-+
T Consensus 264 ---~lq~~e~~~e~~~~~~~il~~~f~~ 288 (296)
T 1xqr_A 264 ---LLQQHEEYQEELEFCEKLLQTCFSS 288 (296)
T ss_dssp ---HHTTCGGGHHHHHHHHHHHHHHCC-
T ss_pred ---HccchHHHHHHHHHHHHHHHHHcCC
Confidence 122244 467777777777777743
No 47
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=79.37 E-value=1.1 Score=51.69 Aligned_cols=98 Identities=16% Similarity=0.172 Sum_probs=61.7
Q ss_pred CCHHHHHHHHHHHHHHhcCCCcccchhhhhhHHHHHHHHhccccCCCCCCcc-hHHHHHHHHHHHHHHHHhCCCCcchHH
Q 011039 180 NNYSLLFALMRVVWNLLQNPHIQIEPYLHQLMPSVVTCLVAKRLGNRLADNH-WELRDFTAKLVAAICKRYGHVYNTLQT 258 (495)
Q Consensus 180 ~nl~~L~~llrmv~ALl~N~~L~IepYLHqLlPsvLTCll~k~l~~~~~~~h-w~LRd~AA~lL~~I~~kf~~sy~~L~~ 258 (495)
.++ .-..+|.+++.+.-...+.+..--. ..|+.+++.- ..|++ -++|+.||.+|+-|++ ++.......
T Consensus 814 ~sW-~R~~~L~~lq~~~f~n~f~l~~~~~---~~i~~~v~~~-----L~D~q~~EVRe~Aa~tLsgll~-c~~~~~~~~- 882 (997)
T 1vsy_5 814 SSN-QTKLQLAFIQHFLSAELLQLTEEEK---NKILEFVVSN-----LYNEQFVEVRVRAASILSDIVH-NWKEEQPLL- 882 (997)
T ss_dssp CSS-SHHHHHHHHHHHHHHHTTTSCTTHH---HHTHHHHTTT-----TTCSSCHHHHHHHHHHHHHHHH-SCCSHHHHH-
T ss_pred CcH-HHHHHHHHHHHHHHHHHHHcCHHHH---HHHHHHHHHH-----hcCCccHHHHHHHHHHHHHHHH-cCCchhhHH-
Confidence 456 6666788888887777766665433 4555555431 24778 8999999999999973 331112222
Q ss_pred HHHHHHHHHhcC---C-------CCCchhhhHHHHHHHhh
Q 011039 259 RLTKTLLNALLD---P-------KRALTQHYGAVQGLAAL 288 (495)
Q Consensus 259 RI~~tL~k~llD---p-------~k~l~t~YGAI~GL~aL 288 (495)
.++..|.+.+.. . .+......|||.||+|+
T Consensus 883 ~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~Al 922 (997)
T 1vsy_5 883 SLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAI 922 (997)
T ss_dssp HHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHH
Confidence 444555554422 0 12336788999999996
No 48
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=78.94 E-value=14 Score=39.26 Aligned_cols=75 Identities=17% Similarity=0.201 Sum_probs=54.9
Q ss_pred chhhhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCchhhhHHHH
Q 011039 204 EPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQ 283 (495)
Q Consensus 204 epYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~sy~~L~~RI~~tL~k~llDp~k~l~t~YGAI~ 283 (495)
......++|.+..|+ .+.+..+|..|+..+..|++.+....+ ...++..+.+.|.|+ .....++|+.
T Consensus 116 ~~~~~~l~~~l~~~L---------~d~~~~VRk~A~~al~~i~~~~p~~~~--~~~~~~~l~~lL~d~--d~~V~~~A~~ 182 (591)
T 2vgl_B 116 DKITEYLCEPLRKCL---------KDEDPYVRKTAAVCVAKLHDINAQMVE--DQGFLDSLRDLIADS--NPMVVANAVA 182 (591)
T ss_dssp GGGHHHHHHHHHHHS---------SCSCHHHHHHHHHHHHHHHHSSCCCHH--HHHHHHHHHHTTSCS--CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc---------CCCChHHHHHHHHHHHHHHhhChhhcc--cccHHHHHHHHhCCC--ChhHHHHHHH
Confidence 334555677788876 245789999999999999996543211 136778888887654 5688899999
Q ss_pred HHHhhCHH
Q 011039 284 GLAALGPN 291 (495)
Q Consensus 284 GL~aLG~~ 291 (495)
.|..++.+
T Consensus 183 aL~~i~~~ 190 (591)
T 2vgl_B 183 ALSEISES 190 (591)
T ss_dssp HHHHHTTS
T ss_pred HHHHHHhh
Confidence 99998764
No 49
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=78.36 E-value=8.8 Score=42.86 Aligned_cols=86 Identities=13% Similarity=0.116 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHhcCCCcccchhhhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCCcchHHHHHHH
Q 011039 184 LLFALMRVVWNLLQNPHIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKT 263 (495)
Q Consensus 184 ~L~~llrmv~ALl~N~~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~sy~~L~~RI~~t 263 (495)
.+..+-++.+.+-.|+ .|+..++|.++.++ . + .++..|+..+..+|+.++..-..--+.|+..
T Consensus 526 a~~~l~~~~~~l~~~~-----~~l~~vl~~l~~~l-~------~-----~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~ 588 (971)
T 2x1g_F 526 ALETMGSYCNWLMENP-----AYIPPAINLLVRGL-N------S-----SMSAQATLGLKELCRDCQLQLKPYADPLLNA 588 (971)
T ss_dssp HHHHHHHTHHHHC---------CHHHHHHHHHHHH-H------S-----SCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCH-----HHHHHHHHHHHHHh-C------h-----HHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 3445666676666665 68888888888887 2 1 4699999999999998765433344567777
Q ss_pred HHHHhcCCCCC---chhhhHHHHHHH
Q 011039 264 LLNALLDPKRA---LTQHYGAVQGLA 286 (495)
Q Consensus 264 L~k~llDp~k~---l~t~YGAI~GL~ 286 (495)
|.+.+..+.-. ....|.||.-+.
T Consensus 589 l~~~l~~~~~~~~~~~~~~~ai~~i~ 614 (971)
T 2x1g_F 589 CHASLNTGRMKNSDSVRLMFSIGKLM 614 (971)
T ss_dssp HHHHHHSTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCChHHHHHHHHHHHHHH
Confidence 77777654322 334465555554
No 50
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=78.07 E-value=14 Score=37.96 Aligned_cols=143 Identities=10% Similarity=0.061 Sum_probs=82.0
Q ss_pred HHHHHHHHccCCchHHHHH---HHHhhhcCC-Cc------cccchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcCCC
Q 011039 131 FDKITELAVSRSDSVLFKQ---ALVSLATDS-GL------HPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPH 200 (495)
Q Consensus 131 f~kIt~all~~~d~~~r~~---AL~sL~tDp-GL------~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~N~~ 200 (495)
...+++.+...++...+.+ +|..|..+. .. ...+|.|+.++.+ .+.......+..+..|..+..
T Consensus 119 v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~------~~~~v~~~a~~aL~~l~~~~~ 192 (528)
T 4b8j_A 119 VPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGS------SSDDVREQAVWALGNVAGDSP 192 (528)
T ss_dssp HHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC------SCHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcC------CCHHHHHHHHHHHHHHhCCCh
Confidence 3444555444332455554 444555432 11 1467777776654 344555555666666654432
Q ss_pred cccchh-hhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCchhhh
Q 011039 201 IQIEPY-LHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHY 279 (495)
Q Consensus 201 L~IepY-LHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~sy~~L~~RI~~tL~k~llDp~k~l~t~Y 279 (495)
-.-+.. -+..+|+++.++- .+.++.+|..|+.+|..+|......-......++..|.+.+.++ ......
T Consensus 193 ~~~~~i~~~g~l~~Ll~lL~--------~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~ 262 (528)
T 4b8j_A 193 KCRDLVLANGALLPLLAQLN--------EHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSN--DEEVLT 262 (528)
T ss_dssp HHHHHHHHTTCHHHHHHTCC--------TTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCC--CHHHHH
T ss_pred hhHHHHHHCCcHHHHHHHHh--------cCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCC--CHHHHH
Confidence 111111 1246777777652 13568999999999999997653333334456777788777654 345666
Q ss_pred HHHHHHHhhC
Q 011039 280 GAVQGLAALG 289 (495)
Q Consensus 280 GAI~GL~aLG 289 (495)
-|+.+|..+.
T Consensus 263 ~a~~aL~~l~ 272 (528)
T 4b8j_A 263 DACWALSYLS 272 (528)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 7777777774
No 51
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=77.57 E-value=1.1 Score=41.06 Aligned_cols=25 Identities=24% Similarity=0.247 Sum_probs=22.9
Q ss_pred CCCCCCCCChhHHHHHHHhcCCCCC
Q 011039 2 RHSRRTTLTTDDVDEALKLRNVEPV 26 (495)
Q Consensus 2 rHsKR~kLTt~DIn~ALr~~nvEPL 26 (495)
+|+||++++.+||-.||..+|+|.+
T Consensus 51 ~ha~RKTv~a~DV~~a~~~lg~~~v 75 (154)
T 1f1e_A 51 DASGKKTLMEEHLKALADVLMVEGV 75 (154)
T ss_dssp HTTTCSEECHHHHHHHHHHHTCTTS
T ss_pred HHcCCCcCCHHHHHHHHHhcccccC
Confidence 5999999999999999999998844
No 52
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=77.48 E-value=14 Score=37.80 Aligned_cols=152 Identities=14% Similarity=0.155 Sum_probs=84.8
Q ss_pred cccchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcCCCcccchhh-hhhHHHHHHHHhccccCCCCCCcchHHHHHHH
Q 011039 161 HPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHIQIEPYL-HQLMPSVVTCLVAKRLGNRLADNHWELRDFTA 239 (495)
Q Consensus 161 ~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~N~~L~IepYL-HqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA 239 (495)
..++|.++..+.. .+.......+..+..|..++.-.++..+ ..++|.++.++- +.++.+|..|+
T Consensus 243 ~~~l~~L~~lL~~------~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~---------~~~~~v~~~a~ 307 (528)
T 4b8j_A 243 RPALPALARLIHS------NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLL---------HPSPSVLIPAL 307 (528)
T ss_dssp TTHHHHHHHHTTC------CCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTT---------CSCHHHHHHHH
T ss_pred HHHHHHHHHHHCC------CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHc---------CCChhHHHHHH
Confidence 3466666665522 4667777777888888776554443333 257787777762 23579999999
Q ss_pred HHHHHHHHHhCCCC-cchHHHHHHHHHHHhcCCCCCchhhhHHHHHHHhh--C-HHHHHHhhc-cChHHHHHhhhHhHhh
Q 011039 240 KLVAAICKRYGHVY-NTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAAL--G-PNVVRLLLL-PNLGPYLSLLEPEMLL 314 (495)
Q Consensus 240 ~lL~~I~~kf~~sy-~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aL--G-~~aVr~lll-P~L~~y~~~Le~~l~~ 314 (495)
.+|+.|+....... .-+...++..|.+.|.++. ......-|+..|..| | .+.+..++- .-++.+...|+.
T Consensus 308 ~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~---- 382 (528)
T 4b8j_A 308 RTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNL-KKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQT---- 382 (528)
T ss_dssp HHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCC-CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHH----
T ss_pred HHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCC-cHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhc----
Confidence 99999985211000 1122345667777776542 345556666777666 2 334444332 233333333331
Q ss_pred hhhhhhhhhhHHHHHHHHHHH
Q 011039 315 EKQKNEVKRHEAWRVYGALLQ 335 (495)
Q Consensus 315 ~~~~~~~~r~ea~~v~~aLl~ 335 (495)
.+...|.+|..+.+-|..
T Consensus 383 ---~~~~v~~~a~~aL~nl~~ 400 (528)
T 4b8j_A 383 ---AEFDIKKEAAWAISNATS 400 (528)
T ss_dssp ---SCHHHHHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHHHHHc
Confidence 133445555555555443
No 53
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=73.54 E-value=70 Score=37.02 Aligned_cols=126 Identities=18% Similarity=0.321 Sum_probs=88.5
Q ss_pred HHHhhhcCCCccccchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcCCCc--ccchhhhhhHHHHHHHHhccccCCCC
Q 011039 150 ALVSLATDSGLHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHI--QIEPYLHQLMPSVVTCLVAKRLGNRL 227 (495)
Q Consensus 150 AL~sL~tDpGL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~N~~L--~IepYLHqLlPsvLTCll~k~l~~~~ 227 (495)
++.++-...+....+|+ .+ .+.+...+.|-..-..-|-.+.+|...... ..|||+-.++|.++.++-.
T Consensus 37 ~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~d------- 106 (986)
T 2iw3_A 37 EVASFLNGNIIEHDVPE--HF-FGELAKGIKDKKTAANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGN------- 106 (986)
T ss_dssp HHHHHHTSSCSSSSCCH--HH-HHHHHHHHTSHHHHHHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTC-------
T ss_pred HHHHHHhccccccccch--hH-HHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcC-------
Confidence 56776665566677775 43 344555444432226778888899954433 7799999999999888632
Q ss_pred CCcchHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCchhhhHHHHHHHhhCHH
Q 011039 228 ADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGPN 291 (495)
Q Consensus 228 ~~~hw~LRd~AA~lL~~I~~kf~~sy~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~ 291 (495)
..=.+|+-|...+..|+..+... .+ ..++..|.+.+.. ..-..+.-||+..|..|-..
T Consensus 107 --k~~~v~~aa~~~~~~~~~~~~~~--a~-~~~~~~~~~~~~~-~~kw~~k~~~l~~~~~~~~~ 164 (986)
T 2iw3_A 107 --KDKEIQSVASETLISIVNAVNPV--AI-KALLPHLTNAIVE-TNKWQEKIAILAAFSAMVDA 164 (986)
T ss_dssp --SSHHHHHHHHHHHHHHHHHSCGG--GH-HHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHH
T ss_pred --CchHHHHHHHHHHHHHHHhCCHH--HH-HHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHHH
Confidence 23379999999999999998752 23 6777777777743 33488999999999888543
No 54
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=70.29 E-value=42 Score=38.11 Aligned_cols=143 Identities=6% Similarity=-0.010 Sum_probs=89.6
Q ss_pred ccchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcCCCcccc-hhhhhhHHHHHHHHhccccCCCC--CCcchHHHHHH
Q 011039 162 PLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHIQIE-PYLHQLMPSVVTCLVAKRLGNRL--ADNHWELRDFT 238 (495)
Q Consensus 162 qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~N~~L~Ie-pYLHqLlPsvLTCll~k~l~~~~--~~~hw~LRd~A 238 (495)
.+++++..++.+.+...-.++......+.++.|+...-.-..+ .|+.++++.++++ +... .++|-.+|..+
T Consensus 447 ~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l------~~~~~~~~~~~~v~~~~ 520 (1049)
T 3m1i_C 447 DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDL------TVKKRGKDNKAVVASDI 520 (1049)
T ss_dssp HHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHH------TTSSCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHH------HhhhccccchHHHHHHH
Confidence 4556666666555543345777777888888888754221212 4567777766652 2211 13566667678
Q ss_pred HHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCchhhhHHHHHHHhhCHHHHHHhh-------ccChHHHHHhhhHh
Q 011039 239 AKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGPNVVRLLL-------LPNLGPYLSLLEPE 311 (495)
Q Consensus 239 A~lL~~I~~kf~~sy~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~ll-------lP~L~~y~~~Le~~ 311 (495)
..++++.++-+.. .+..-+.++..+.+.+.|+ +...+.-|..+|..|..+.-..++ -|++..+...|...
T Consensus 521 ~~~lgry~~~~~~-~~~~l~~vl~~ll~~l~~~--~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~ 597 (1049)
T 3m1i_C 521 MYVVGQYPRFLKA-HWNFLRTVILKLFEFMHET--HEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKT 597 (1049)
T ss_dssp HHHHHHCHHHHHH-CHHHHHHHHHHHHHHTTSS--CHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHh-HHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHH
Confidence 8899988765544 3566677888888887765 455566677777777665433332 28898888877755
Q ss_pred Hh
Q 011039 312 ML 313 (495)
Q Consensus 312 l~ 313 (495)
+.
T Consensus 598 ~~ 599 (1049)
T 3m1i_C 598 TA 599 (1049)
T ss_dssp HT
T ss_pred HH
Confidence 43
No 55
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=69.71 E-value=51 Score=35.50 Aligned_cols=77 Identities=14% Similarity=0.110 Sum_probs=56.8
Q ss_pred chhhhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCchhhhHHHH
Q 011039 204 EPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQ 283 (495)
Q Consensus 204 epYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~sy~~L~~RI~~tL~k~llDp~k~l~t~YGAI~ 283 (495)
..++..++|.|..|+.+. +.+..+|..|+-.+..|++.+....+. +.+...+.+.|.| +.....++|+.
T Consensus 141 ~e~~~~l~~~v~~~l~~~-------d~~~~VRK~A~~al~kl~~~~p~~~~~--~~~~~~l~~lL~d--~d~~V~~~a~~ 209 (621)
T 2vgl_A 141 REMAEAFAGEIPKILVAG-------DTMDSVKQSAALCLLRLYRTSPDLVPM--GDWTSRVVHLLND--QHLGVVTAATS 209 (621)
T ss_dssp HHHHHHHTTHHHHHHHCS-------SSCHHHHHHHHHHHHHHHHHCGGGCCC--CSCHHHHHHHTTC--SCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCC-------CCCHHHHHHHHHHHHHHHHhChhhcCc--hhHHHHHHHHhCC--CCccHHHHHHH
Confidence 446778899999998542 557899999999999999986554431 1556666666654 45688899999
Q ss_pred HHHhhCHH
Q 011039 284 GLAALGPN 291 (495)
Q Consensus 284 GL~aLG~~ 291 (495)
.|..+..+
T Consensus 210 ~l~~i~~~ 217 (621)
T 2vgl_A 210 LITTLAQK 217 (621)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88888554
No 56
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=66.49 E-value=1.7 Score=37.55 Aligned_cols=21 Identities=24% Similarity=0.441 Sum_probs=19.3
Q ss_pred CCCCCCCCChhHHHHHHHhcC
Q 011039 2 RHSRRTTLTTDDVDEALKLRN 22 (495)
Q Consensus 2 rHsKR~kLTt~DIn~ALr~~n 22 (495)
+|+||++++++||-.||+-.+
T Consensus 53 ~HA~RKTV~~eDV~lalrr~g 73 (111)
T 3b0c_T 53 QHAGRKTVEMADVELLMRRQG 73 (111)
T ss_dssp HHTTCSEECHHHHHHHHHHTT
T ss_pred HHcCCCcCCHHHHHHHHHHCC
Confidence 699999999999999999854
No 57
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=66.49 E-value=55 Score=35.21 Aligned_cols=179 Identities=15% Similarity=0.136 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHccCCchHHHHHHHH---hhhcCCCccccchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcCCCccc
Q 011039 127 LQLYFDKITELAVSRSDSVLFKQALV---SLATDSGLHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHIQI 203 (495)
Q Consensus 127 lQlYf~kIt~all~~~d~~~r~~AL~---sL~tDpGL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~N~~L~I 203 (495)
.+.|...|...+...+|...+..||+ .|.++.-+..++..+..|+.+ .|.+.-..+++-+..+..+=.=..
T Consensus 366 ~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~eL~~yl~~------~d~~~~~~~v~~I~~la~k~~~~~ 439 (621)
T 2vgl_A 366 VKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLET------ADYSIREEIVLKVAILAEKYAVDY 439 (621)
T ss_dssp HHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH------CCHHHHHHHHHHHHHHHHHHCSST
T ss_pred HHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcChhhHHHHHHHHHHHHHh------cCHHHHHHHHHHHHHHHHhcCCcH
Confidence 34455555554431456666666664 556666788888888888865 133333334444433332211123
Q ss_pred chhhhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCchhhhHHHH
Q 011039 204 EPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQ 283 (495)
Q Consensus 204 epYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~sy~~L~~RI~~tL~k~llDp~k~l~t~YGAI~ 283 (495)
+-|+.-|+. ++..- |+. +.+.+...+..|+.+ ++.++..++..|...+.||...-.-...|++
T Consensus 440 ~~~v~~Ll~-ll~~~-----~~~-------v~~ev~~~l~~ii~~----~~~~~~~~~~~l~~~l~~~~~~~~li~~~~w 502 (621)
T 2vgl_A 440 TWYVDTILN-LIRIA-----GDY-------VSEEVWYRVIQIVIN----RDDVQGYAAKTVFEALQAPACHENLVKVGGY 502 (621)
T ss_dssp HHHHHHHHH-HHHHH-----GGG-------SCSHHHHHHHHHHGG----GCSCHHHHHHHHHHHHTSSSCCHHHHHHHHH
T ss_pred HHHHHHHHH-HHHhh-----ccc-------chHHHHHHHHHHHhC----ChhHHHHHHHHHHHHHcCccchHHHHHHHHH
Confidence 455554443 22221 111 122233344444443 3678899999999999988766555667789
Q ss_pred HHHhhCHHHHHHhhccCh--HHHHHhhhHhHhhhhhhhhhhhhHHHHHHHHHHHHHHHhH
Q 011039 284 GLAALGPNVVRLLLLPNL--GPYLSLLEPEMLLEKQKNEVKRHEAWRVYGALLQAAGQCI 341 (495)
Q Consensus 284 GL~aLG~~aVr~lllP~L--~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~aLl~A~g~~~ 341 (495)
.|.+.|...-.. |.+ ..+.+.+...+.. +-..|...+|.|+..+.
T Consensus 503 ilGEy~~~~~~~---~~~~p~~~l~~l~~~~~~----------~~~~v~~~~Lta~~Kl~ 549 (621)
T 2vgl_A 503 ILGEFGNLIAGD---PRSSPLIQFNLLHSKFHL----------CSVPTRALLLSTYIKFV 549 (621)
T ss_dssp HHHHHTHHHHSS---TTSCHHHHHHHHHHHHTT----------SCHHHHHHHHHHHHHHH
T ss_pred HhcchHHHhccc---CCCCHHHHHHHHHHHhcc----------CCHHHHHHHHHHHHHHH
Confidence 999998765542 111 1233333322221 22456677777777654
No 58
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=63.95 E-value=2.8 Score=34.52 Aligned_cols=24 Identities=38% Similarity=0.493 Sum_probs=20.1
Q ss_pred CCCCCCCCChhHHHHHHHhcCCCC
Q 011039 2 RHSRRTTLTTDDVDEALKLRNVEP 25 (495)
Q Consensus 2 rHsKR~kLTt~DIn~ALr~~nvEP 25 (495)
.|+||.++++.||..|.+.++...
T Consensus 56 iHAkRvTi~~kDiqLa~rirg~~~ 79 (82)
T 3nqj_A 56 LHAGRVTLFPKDVQLARRIRGLEE 79 (82)
T ss_dssp HHTTCSSBCHHHHHHHHHHHC---
T ss_pred HHcCCccCcHHHHHHHHHHccccc
Confidence 599999999999999999998753
No 59
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=62.82 E-value=18 Score=31.77 Aligned_cols=140 Identities=14% Similarity=0.140 Sum_probs=77.6
Q ss_pred HHHHHHHccCCchHHHHHHH---Hhhhc-CCCc------cccchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcCCCc
Q 011039 132 DKITELAVSRSDSVLFKQAL---VSLAT-DSGL------HPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHI 201 (495)
Q Consensus 132 ~kIt~all~~~d~~~r~~AL---~sL~t-DpGL------~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~N~~L 201 (495)
..+.+.+.+ +++..+..|+ ..|.. ++.. ...+|.++.++.+ .+.......+..+..|..+..-
T Consensus 57 ~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~------~~~~v~~~a~~~L~~l~~~~~~ 129 (210)
T 4db6_A 57 PALVQLLSS-PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS------PNEQILQEALWALSNIASGGNE 129 (210)
T ss_dssp HHHHHHTTC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTC------SCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHcC-CCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcC------CcHHHHHHHHHHHHHHHcCCHH
Confidence 344554443 4555565544 44442 2222 2367777777644 2455566667777777754332
Q ss_pred ccchhh-hhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCC-cchHHHHHHHHHHHhcCCCCCchhhh
Q 011039 202 QIEPYL-HQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVY-NTLQTRLTKTLLNALLDPKRALTQHY 279 (495)
Q Consensus 202 ~IepYL-HqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~sy-~~L~~RI~~tL~k~llDp~k~l~t~Y 279 (495)
..+..+ +..+|.++.++- +.+..+|..|+..|..+|......- .-....++..|.+.+.+ .....+.
T Consensus 130 ~~~~~~~~~~i~~L~~ll~---------~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~v~~ 198 (210)
T 4db6_A 130 QIQAVIDAGALPALVQLLS---------SPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH--ENEKIQK 198 (210)
T ss_dssp HHHHHHHTTHHHHHHHHTT---------CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGC--SCHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHc---------CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhC--CCHHHHH
Confidence 222222 457888887762 2356899999999999986311100 01122345666666654 3445566
Q ss_pred HHHHHHHhhC
Q 011039 280 GAVQGLAALG 289 (495)
Q Consensus 280 GAI~GL~aLG 289 (495)
-|...|..|.
T Consensus 199 ~a~~aL~~l~ 208 (210)
T 4db6_A 199 EAQEALEKLQ 208 (210)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHh
Confidence 6666666553
No 60
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=62.42 E-value=1.6e+02 Score=31.62 Aligned_cols=144 Identities=18% Similarity=0.210 Sum_probs=74.7
Q ss_pred eecCCccccCCHHHHHHHHHHHHHHccCCchHHHH---HHH---HhhhcCCCccccchhHHHHHHHhhhcC--CCCHHHH
Q 011039 114 EIKLPVKHILSRELQLYFDKITELAVSRSDSVLFK---QAL---VSLATDSGLHPLVPYFTYFVADEVSRG--LNNYSLL 185 (495)
Q Consensus 114 ~vKp~vkh~LSkElQlYf~kIt~all~~~d~~~r~---~AL---~sL~tDpGL~qLLPYfv~FI~e~V~~n--l~nl~~L 185 (495)
.+++..+.++++|.+.|+...+.-++..-....+. ..| ....+-+|.++|+.++.... +.... ..|.+.+
T Consensus 161 kl~~l~~~~l~~E~E~~i~~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qeLv~ii~eQa--~L~~~f~~sD~e~v 238 (507)
T 3u0r_A 161 KLKTLPDEVLTKEVEELILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVELVAEQA--DLEQTFNPSDPDCV 238 (507)
T ss_dssp HGGGSCTTTSCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHHHHHHHHHHHH--TTTSCCCSSCHHHH
T ss_pred HHhhcchhhccHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHH--hccCCCCCcCHHHH
Confidence 35677888999999999777666555322222233 223 44566677777765554332 12222 2365444
Q ss_pred H---HHHHHHHHHhcCCCc----ccchhhhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCC--Ccch
Q 011039 186 F---ALMRVVWNLLQNPHI----QIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHV--YNTL 256 (495)
Q Consensus 186 ~---~llrmv~ALl~N~~L----~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~s--y~~L 256 (495)
. ..++++--+. .... +++.|..+++| .-..+......+.|.||-+ ++++.++.-++.. -..+
T Consensus 239 dRlI~C~~~ALP~F-S~~v~StkFv~y~~~kIlP------~l~~L~e~~~~~~~kL~LL--K~lAE~s~~~~~~e~a~~~ 309 (507)
T 3u0r_A 239 DRLLQCTRQAVPLF-SKNVHSTRFVTYFCEQVLP------NLGTLTTPVEGLDIQLEVL--KLLAEMSSFCGDMEKLETN 309 (507)
T ss_dssp HHHHHHHHHHGGGC-BTTBCCHHHHHHHHHHTGG------GTTCCCCC--CCCHHHHHH--HHHHHHHTTCCCCTTHHHH
T ss_pred HHHHHHHHHHHHHh-ccCCChHHHHHHHHHhhcc------chhhccccccchHHHHHHH--HHHHHHccCCCccchHHHH
Confidence 4 4444442222 2222 55556667777 1112222111223777433 5566666666622 2335
Q ss_pred HHHHHHHHHHHh
Q 011039 257 QTRLTKTLLNAL 268 (495)
Q Consensus 257 ~~RI~~tL~k~l 268 (495)
-+-|..+|++.+
T Consensus 310 l~~iy~~L~~ym 321 (507)
T 3u0r_A 310 LRKLFDKLLEYM 321 (507)
T ss_dssp HHHHHHHHHTTS
T ss_pred HHHHHHHHHHHC
Confidence 566677776655
No 61
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=56.80 E-value=4.2 Score=32.32 Aligned_cols=20 Identities=35% Similarity=0.542 Sum_probs=18.3
Q ss_pred CCCCCCCCChhHHHHHHHhc
Q 011039 2 RHSRRTTLTTDDVDEALKLR 21 (495)
Q Consensus 2 rHsKR~kLTt~DIn~ALr~~ 21 (495)
+|++|++++.+||..|.+.+
T Consensus 47 ~HAgrktv~~eDVkLAi~~~ 66 (68)
T 1taf_A 47 NHARKKTIDLDDVRLATEVT 66 (68)
T ss_dssp HHTTCSSBCHHHHHHHHHHT
T ss_pred HHcCCCCCCHHHHHHHHHhc
Confidence 59999999999999999865
No 62
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=56.57 E-value=96 Score=35.75 Aligned_cols=90 Identities=10% Similarity=0.114 Sum_probs=55.8
Q ss_pred HHHHHHHHHhcCCCcccchhhhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCCc--------chHH
Q 011039 187 ALMRVVWNLLQNPHIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYN--------TLQT 258 (495)
Q Consensus 187 ~llrmv~ALl~N~~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~sy~--------~L~~ 258 (495)
.+-|..+=+-.|| ++++++|..++..- .++|-.+.+.|+..+..||.+|+.... .--.
T Consensus 523 ~lGry~~wl~~~~---------~~L~~vl~~L~~~l-----~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~ 588 (1023)
T 4hat_C 523 VVGQYPRFLKAHW---------NFLRTVILKLFEFM-----HETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQ 588 (1023)
T ss_dssp HHHTCHHHHHHCH---------HHHHHHHHHHHHHT-----TCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHH
T ss_pred HHHHHHHHHhccH---------HHHHHHHHHHHHHh-----hcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHH
Confidence 3445555554443 34666666665532 245668999999999999999875331 1345
Q ss_pred HHHHHHHHHhcC-CCCCchhhhHHHHHHHh-hCH
Q 011039 259 RLTKTLLNALLD-PKRALTQHYGAVQGLAA-LGP 290 (495)
Q Consensus 259 RI~~tL~k~llD-p~k~l~t~YGAI~GL~a-LG~ 290 (495)
-|++.+.+++-+ +.+.....|.||..+.. ++.
T Consensus 589 ~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~ 622 (1023)
T 4hat_C 589 TIIRDIQKTTADLQPQQVHTFYKACGIIISEERS 622 (1023)
T ss_dssp HHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCC
Confidence 577777777642 22345667777776654 453
No 63
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=55.56 E-value=5.3 Score=32.94 Aligned_cols=22 Identities=18% Similarity=0.291 Sum_probs=19.0
Q ss_pred CCCCCCCCChhHHHHHHHhcCC
Q 011039 2 RHSRRTTLTTDDVDEALKLRNV 23 (495)
Q Consensus 2 rHsKR~kLTt~DIn~ALr~~nv 23 (495)
.|+||++++.+||-.|++.++.
T Consensus 56 ~~~kRkTI~~~Dv~~Al~~l~F 77 (93)
T 1n1j_A 56 HQEKRKTINGEDILFAMSTLGF 77 (93)
T ss_dssp HHTTCSSBCHHHHHHHHHHTTC
T ss_pred HHcCCCccCHHHHHHHHHHcCc
Confidence 4889999999999999995543
No 64
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=55.55 E-value=60 Score=34.40 Aligned_cols=116 Identities=9% Similarity=0.054 Sum_probs=71.8
Q ss_pred CchHHHHH---HHHhhhcCCCc-------cccchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcCCCcccchhhhhhH
Q 011039 142 SDSVLFKQ---ALVSLATDSGL-------HPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHIQIEPYLHQLM 211 (495)
Q Consensus 142 ~d~~~r~~---AL~sL~tDpGL-------~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~N~~L~IepYLHqLl 211 (495)
+++..+.. +|..|..+..- ...+|.++..+.+. .+........+.+..|..++......+-...+
T Consensus 26 ~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~-----~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i 100 (644)
T 2z6h_A 26 EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT-----NDVETARCTAGTLHNLSHHREGLLAIFKSGGI 100 (644)
T ss_dssp SCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSC-----CCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHH
T ss_pred CCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcC-----CCHHHHHHHHHHHHHHhcChhhHHHHHHcCCH
Confidence 34445544 44566666541 24567776666531 35566666677777777776533333444678
Q ss_pred HHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCCcch-HHHHHHHHHHHhcCC
Q 011039 212 PSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTL-QTRLTKTLLNALLDP 271 (495)
Q Consensus 212 PsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~sy~~L-~~RI~~tL~k~llDp 271 (495)
|.++.++- .....+|..|+..|..|+......-..+ +..++..|.+.|.++
T Consensus 101 ~~Lv~lL~---------~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~ 152 (644)
T 2z6h_A 101 PALVKMLG---------SPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 152 (644)
T ss_dssp HHHHHHTT---------CSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCC
T ss_pred HHHHHHHh---------CCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcC
Confidence 88877752 1246899999999999998754322222 355677788888765
No 65
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=55.44 E-value=1.4e+02 Score=34.80 Aligned_cols=89 Identities=13% Similarity=0.164 Sum_probs=52.9
Q ss_pred cCCCccccchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcCCCcccchhhhhhHHHHHHHH---hcc-ccCCC-----
Q 011039 156 TDSGLHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHIQIEPYLHQLMPSVVTCL---VAK-RLGNR----- 226 (495)
Q Consensus 156 tDpGL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~N~~L~IepYLHqLlPsvLTCl---l~k-~l~~~----- 226 (495)
..+.++++++++..|... .+...-...+.+-.+++++..+..++.+..+++.++.++ +.| +....
T Consensus 345 ~~~~l~~~l~~lL~~t~~------~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~ 418 (1204)
T 3a6p_A 345 TPSNFGKYLESFLAFTTH------PSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPS 418 (1204)
T ss_dssp CCTTHHHHHHHHHHHHTS------SCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTH
T ss_pred ChhHHHHHHHHHHHHHhC------ccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhcCccccCCcc
Confidence 455566777777766643 355555555666666777765444444444555555554 333 12110
Q ss_pred -------CC------CcchHHHHHHHHHHHHHHHHhC
Q 011039 227 -------LA------DNHWELRDFTAKLVAAICKRYG 250 (495)
Q Consensus 227 -------~~------~~hw~LRd~AA~lL~~I~~kf~ 250 (495)
.. ..-|..|...+.++..||..+.
T Consensus 419 ~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p 455 (1204)
T 3a6p_A 419 CEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDP 455 (1204)
T ss_dssp HHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred hhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 00 1247899999999999998874
No 66
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=54.46 E-value=53 Score=36.20 Aligned_cols=98 Identities=14% Similarity=0.097 Sum_probs=58.1
Q ss_pred CHHHHHHHHHHHHHHhcCCCcccchhhhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCC-CCcchHHH
Q 011039 181 NYSLLFALMRVVWNLLQNPHIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGH-VYNTLQTR 259 (495)
Q Consensus 181 nl~~L~~llrmv~ALl~N~~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~-sy~~L~~R 259 (495)
+.......+..+..|..+..-. .-...++|.++..+ ....|.+|..|+.+|+.|+..... ...-++..
T Consensus 373 ~~~~~~~a~~~L~~L~~~~~~~--~~~~~~i~~Lv~lL---------~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g 441 (780)
T 2z6g_A 373 SQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLL---------GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVG 441 (780)
T ss_dssp CHHHHHHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHT---------TCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTT
T ss_pred chHHHHHHHHHHHHHhccchhh--hhhhhHHHHHHHHH---------cCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCC
Confidence 4455555666666776655322 12356777777765 135789999999999999653100 00001122
Q ss_pred HHHHHHHHhcCCCCCchhhhHHHHHHHhhC
Q 011039 260 LTKTLLNALLDPKRALTQHYGAVQGLAALG 289 (495)
Q Consensus 260 I~~tL~k~llDp~k~l~t~YGAI~GL~aLG 289 (495)
.+..|.+.+.++...-...+-|+.+|..|.
T Consensus 442 ~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~ 471 (780)
T 2z6g_A 442 GIEALVRTVLRAGDREDITEPAICALRHLT 471 (780)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 455566666543333467788888888874
No 67
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=54.22 E-value=1.6e+02 Score=28.51 Aligned_cols=100 Identities=16% Similarity=0.171 Sum_probs=68.0
Q ss_pred cchHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCchhhhHHHHHHHhhCHHHHHHhhc-cC----hHHH
Q 011039 230 NHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGPNVVRLLLL-PN----LGPY 304 (495)
Q Consensus 230 ~hw~LRd~AA~lL~~I~~kf~~sy~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~lll-P~----L~~y 304 (495)
..-++|.+-+.++..+|++ .+.+.++++.+|...+-| ......=.+|.+...+=+.+.+.++- |+ ....
T Consensus 65 ~~~~vrk~~~~Fi~e~~~~----k~~l~~~~l~~L~~Ll~d--~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~ 138 (257)
T 3gs3_A 65 SNMEVRKQVVAFVEQVCKV----KVELLPHVINVVSMLLRD--NSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQA 138 (257)
T ss_dssp SCHHHHHHHHHHHHHHHHH----CGGGHHHHHHHHHHHTTC--SCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHH
Confidence 3468999999999999977 478999999999988875 34556667888888887888777653 33 3456
Q ss_pred HHhhhH---hHhhh-hhhhhhhhhHHHHHHHHHHH
Q 011039 305 LSLLEP---EMLLE-KQKNEVKRHEAWRVYGALLQ 335 (495)
Q Consensus 305 ~~~Le~---~l~~~-~~~~~~~r~ea~~v~~aLl~ 335 (495)
|+.+.. .+..- ...|...|..|.|+...++-
T Consensus 139 W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl 173 (257)
T 3gs3_A 139 WNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVV 173 (257)
T ss_dssp HHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHH
Confidence 655432 11111 12355566666666665543
No 68
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=50.92 E-value=61 Score=37.06 Aligned_cols=96 Identities=11% Similarity=0.009 Sum_probs=57.0
Q ss_pred ccchhHHHHHHHhhhcCC---CCHHH----HHHHHHHHHHHhcCCCcccchhhhhhHHHHHHHHhccccCCCCCCcchHH
Q 011039 162 PLVPYFTYFVADEVSRGL---NNYSL----LFALMRVVWNLLQNPHIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWEL 234 (495)
Q Consensus 162 qLLPYfv~FI~e~V~~nl---~nl~~----L~~llrmv~ALl~N~~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~L 234 (495)
.-+|.++.++..-+...+ .+..+ +..+-|..+=+..+| +.+|++|..++..+-- .+.+-.+
T Consensus 486 ~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~---------~~l~~~L~~ll~~~gl---~~~~~~V 553 (980)
T 3ibv_A 486 KSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYES---------AAIPALIEYFVGPRGI---HNTNERV 553 (980)
T ss_dssp CCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCC---------TTHHHHHHHHTSTTTT---TCCCTTT
T ss_pred chhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCc---------hhHHHHHHHHhccccc---cCCChhH
Confidence 455666666555443322 12221 222444444444443 5677888887763211 1234478
Q ss_pred HHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhc
Q 011039 235 RDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALL 269 (495)
Q Consensus 235 Rd~AA~lL~~I~~kf~~sy~~L~~RI~~tL~k~ll 269 (495)
|..|+.++..+|+.++..-..--..|+..+...|.
T Consensus 554 ~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~ 588 (980)
T 3ibv_A 554 RPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLN 588 (980)
T ss_dssp HHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGC
T ss_pred HHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhc
Confidence 99999999999999987554445558877776664
No 69
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=47.92 E-value=52 Score=36.31 Aligned_cols=123 Identities=12% Similarity=0.070 Sum_probs=70.3
Q ss_pred HHHHHccCCchHHHHHHHH---hhhcCCC-------ccccchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcCCCccc
Q 011039 134 ITELAVSRSDSVLFKQALV---SLATDSG-------LHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHIQI 203 (495)
Q Consensus 134 It~all~~~d~~~r~~AL~---sL~tDpG-------L~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~N~~L~I 203 (495)
+++.+. ..+...+..|+. .|..+.. ....+|.+++++... .+........+.+..|..++.-.-
T Consensus 155 Lv~lL~-~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~-----~d~~vr~~Aa~aL~~Ls~~~~~~~ 228 (780)
T 2z6g_A 155 LTKLLN-DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT-----NDVETARCTSGTLHNLSHHREGLL 228 (780)
T ss_dssp HHHHHH-CSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHTSHHHHH
T ss_pred HHHHHC-CCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCC-----CCHHHHHHHHHHHHHHhCCchhHH
Confidence 344333 345556665544 4444321 224677777666532 355555566666666666543211
Q ss_pred chhhhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCCcch-HHHHHHHHHHHhcCC
Q 011039 204 EPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTL-QTRLTKTLLNALLDP 271 (495)
Q Consensus 204 epYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~sy~~L-~~RI~~tL~k~llDp 271 (495)
.-.-...+|.++.++- ...-.+|..|+..|..||..+...-..+ ...++..|.+.+.++
T Consensus 229 ~i~~~g~I~~Lv~lL~---------~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~ 288 (780)
T 2z6g_A 229 AIFKSGGIPALVNMLG---------SPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 288 (780)
T ss_dssp HHHHTTHHHHHHHHTT---------CSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCC
T ss_pred HHHHcCCHHHHHHHHc---------CCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcC
Confidence 1122356777777752 1246899999999999998765422222 245666788887753
No 70
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=47.64 E-value=3.8 Score=34.26 Aligned_cols=19 Identities=26% Similarity=0.359 Sum_probs=17.2
Q ss_pred CCCCCCCCChhHHHHHHHh
Q 011039 2 RHSRRTTLTTDDVDEALKL 20 (495)
Q Consensus 2 rHsKR~kLTt~DIn~ALr~ 20 (495)
+|++|++.+++||..|+|-
T Consensus 61 ~HAgRkTI~~eDV~L~~Rr 79 (90)
T 3v9r_A 61 RHAGRGVVNKSDLMLYLRK 79 (90)
T ss_dssp HHTTCSEECHHHHHHHTTT
T ss_pred HHcCCCccCHHHHHHHHHh
Confidence 6999999999999998764
No 71
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=46.91 E-value=80 Score=31.64 Aligned_cols=126 Identities=11% Similarity=0.072 Sum_probs=73.2
Q ss_pred HHHHHHHHccCCchHHHHHHH---HhhhcCCCc-------cccchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcCCC
Q 011039 131 FDKITELAVSRSDSVLFKQAL---VSLATDSGL-------HPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPH 200 (495)
Q Consensus 131 f~kIt~all~~~d~~~r~~AL---~sL~tDpGL-------~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~N~~ 200 (495)
...+++.+- .+++..+..|+ ..|..+..- ...+|.+++.+... .+........+.+..|..++.
T Consensus 19 i~~Lv~lL~-~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~-----~~~~~~~~a~~~L~~ls~~~~ 92 (529)
T 1jdh_A 19 IPELTKLLN-DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT-----NDVETARCTAGTLHNLSHHRE 92 (529)
T ss_dssp HHHHHHHHT-CSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHcCch
Confidence 344444433 34555555544 444443321 13567777766532 356666667777777776654
Q ss_pred cccchhhhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCCcch-HHHHHHHHHHHhcCC
Q 011039 201 IQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTL-QTRLTKTLLNALLDP 271 (495)
Q Consensus 201 L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~sy~~L-~~RI~~tL~k~llDp 271 (495)
..-.-.-...+|.++.++- +++..+|..|+..|..||......-..+ +..++..|.+.+.++
T Consensus 93 ~~~~i~~~g~i~~L~~lL~---------~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~ 155 (529)
T 1jdh_A 93 GLLAIFKSGGIPALVKMLG---------SPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 155 (529)
T ss_dssp HHHHHHHTTHHHHHHHHTT---------CSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCC
T ss_pred hHHHHHHcCCHHHHHHHHc---------CCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcC
Confidence 2222222357787777752 2236899999999999998754322222 355677788888754
No 72
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=46.22 E-value=4.2 Score=35.08 Aligned_cols=19 Identities=37% Similarity=0.643 Sum_probs=17.4
Q ss_pred CCCCCCCCChhHHHHHHHh
Q 011039 2 RHSRRTTLTTDDVDEALKL 20 (495)
Q Consensus 2 rHsKR~kLTt~DIn~ALr~ 20 (495)
+|++|++++++||..|+|-
T Consensus 68 ~HAgRkTI~~eDV~La~Rr 86 (107)
T 3b0b_B 68 RHAKRSTITSEDVKLLARR 86 (107)
T ss_dssp HHTTCSEECHHHHHHHTTT
T ss_pred HhcCcCcCCHHHHHHHHHh
Confidence 6999999999999999874
No 73
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=45.51 E-value=89 Score=36.41 Aligned_cols=117 Identities=13% Similarity=0.162 Sum_probs=68.3
Q ss_pred CcchHHHHHHHHHHHHHHHHhCCCCcc--------hHHHHHHHHHHHhcC-CCCCchhhhHHHHHHH-hhCH-----HHH
Q 011039 229 DNHWELRDFTAKLVAAICKRYGHVYNT--------LQTRLTKTLLNALLD-PKRALTQHYGAVQGLA-ALGP-----NVV 293 (495)
Q Consensus 229 ~~hw~LRd~AA~lL~~I~~kf~~sy~~--------L~~RI~~tL~k~llD-p~k~l~t~YGAI~GL~-aLG~-----~aV 293 (495)
+.|=.+.+.|+..+..||.+|+...-+ .-..|.+.+.+++.+ +.+...+.|.|+..+. +.|. +.+
T Consensus 577 ~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~~~~~~~~i 656 (1073)
T 3gjx_A 577 ETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQTVQEHLI 656 (1073)
T ss_dssp CCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 345589999999999999999875432 345677777777654 3456778888877665 4464 345
Q ss_pred HHhhccChHHHHHhhhHhHhhhh---hhhhhhh-hHHHHHHHHHHHHHHHhHhhhh
Q 011039 294 RLLLLPNLGPYLSLLEPEMLLEK---QKNEVKR-HEAWRVYGALLQAAGQCIYDRL 345 (495)
Q Consensus 294 r~lllP~L~~y~~~Le~~l~~~~---~~~~~~r-~ea~~v~~aLl~A~g~~~~~~~ 345 (495)
+.++-|.+..+.+.++..-.... .....++ .-..+|..+.-.|+|..+...+
T Consensus 657 ~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~il~~n~~v~~~~g~~f~~~~ 712 (1073)
T 3gjx_A 657 EKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGHPFVIQL 712 (1073)
T ss_dssp HHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCchhccChHHHHHHHHHHhhhHHHHhhcchhHHHHH
Confidence 66656666665555543211100 0011122 1344555555566665544444
No 74
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=43.92 E-value=2e+02 Score=32.37 Aligned_cols=142 Identities=15% Similarity=0.213 Sum_probs=85.3
Q ss_pred CHHHHHHHHHHHHHHhcCCCcccchhhhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHH------hCCCCc
Q 011039 181 NYSLLFALMRVVWNLLQNPHIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKR------YGHVYN 254 (495)
Q Consensus 181 nl~~L~~llrmv~ALl~N~~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k------f~~sy~ 254 (495)
+........+++.+|..|+...-.--=+.-+|++|..+....- ..+ ..|..||..|+.|.-. |+. |.
T Consensus 470 s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~----~~~--~~k~~AA~ALArLlis~np~~~f~~-~~ 542 (778)
T 3opb_A 470 SPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQD----IGE--PIRILGCRALTRMLIFTNPGLIFKK-YS 542 (778)
T ss_dssp CHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC-------CC--HHHHHHHHHHHHHHHTSCHHHHSSS-SC
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCC----cch--HHHHHHHHHHHHHHhcCCHHHHcCC-Cc
Confidence 3445556778888888887654444445678888887754311 011 5899999999999842 322 22
Q ss_pred chHHHHHHHHHHHhc-CCCC-----------CchhhhHHHHHHHhh--CH----HHHHHhhccChHHHHHhhhHhHhhhh
Q 011039 255 TLQTRLTKTLLNALL-DPKR-----------ALTQHYGAVQGLAAL--GP----NVVRLLLLPNLGPYLSLLEPEMLLEK 316 (495)
Q Consensus 255 ~L~~RI~~tL~k~ll-Dp~k-----------~l~t~YGAI~GL~aL--G~----~aVr~lllP~L~~y~~~Le~~l~~~~ 316 (495)
.+ -.++-|.+-|. +|.. +.-.+|-|+.+|..| ++ +-+|..|+-. ...|..|+.-+..
T Consensus 543 ~~--~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~-~ga~~~L~~LL~s-- 617 (778)
T 3opb_A 543 AL--NAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVST-KVYWSTIENLMLD-- 617 (778)
T ss_dssp ST--THHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHS-HHHHHHHHHGGGC--
T ss_pred cc--cchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHh-cCHHHHHHHHHhC--
Confidence 11 45556665554 2332 112488899997777 22 4566655432 1256666665543
Q ss_pred hhhhhhhhHHHHHHHHHHH
Q 011039 317 QKNEVKRHEAWRVYGALLQ 335 (495)
Q Consensus 317 ~~~~~~r~ea~~v~~aLl~ 335 (495)
.+...|..|..+...|..
T Consensus 618 -~n~~VrrAA~elI~NL~~ 635 (778)
T 3opb_A 618 -ENVPLQRSTLELISNMMS 635 (778)
T ss_dssp -SSHHHHHHHHHHHHHHHT
T ss_pred -CCHHHHHHHHHHHHHHhC
Confidence 355677777777777764
No 75
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=42.53 E-value=3e+02 Score=28.22 Aligned_cols=102 Identities=15% Similarity=0.183 Sum_probs=55.4
Q ss_pred HHHHHHHHccCCchHHHHHHHHhh------hcCCCccc-----cchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcCC
Q 011039 131 FDKITELAVSRSDSVLFKQALVSL------ATDSGLHP-----LVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNP 199 (495)
Q Consensus 131 f~kIt~all~~~d~~~r~~AL~sL------~tDpGL~q-----LLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~N~ 199 (495)
.+++++.+.++ |.+.+-.|...+ +.+|-++. .+|.|++|+.. -++..........+.-|....
T Consensus 59 i~~~v~~l~s~-d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~-----~~~~~lq~~Aa~aL~nias~~ 132 (510)
T 3ul1_B 59 VEDIVKGINSN-NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGK-----TDCSPIQFESAWALTNIASGT 132 (510)
T ss_dssp HHHHHHHHTSS-CHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTC-----TTCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCC-----CCCHHHHHHHHHHHHHHhcCC
Confidence 46778887764 444444444333 34555544 48999998853 123333333333333333322
Q ss_pred Ccccchhh-hhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHH
Q 011039 200 HIQIEPYL-HQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICK 247 (495)
Q Consensus 200 ~L~IepYL-HqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~ 247 (495)
.=+-.--+ +-.+|.++.++- ..+-.+|+.|+..|+.|+.
T Consensus 133 ~e~~~~vv~~GaIp~Lv~lL~---------s~~~~v~e~A~~aL~nLa~ 172 (510)
T 3ul1_B 133 SEQTKAVVDGGAIPAFISLLA---------SPHAHISEQAVWALGNIAG 172 (510)
T ss_dssp HHHHHHHHHTTHHHHHHHHTT---------CSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHc---------CCCHHHHHHHHHHHHHHHh
Confidence 11111111 246888888762 2345899999999999873
No 76
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=41.71 E-value=1.5e+02 Score=31.33 Aligned_cols=98 Identities=14% Similarity=0.085 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHHHHHhcCCCcccchhhhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCC-CCcchHHH
Q 011039 181 NYSLLFALMRVVWNLLQNPHIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGH-VYNTLQTR 259 (495)
Q Consensus 181 nl~~L~~llrmv~ALl~N~~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~-sy~~L~~R 259 (495)
+.......+..+..|..+..-. ..+..++|.++..+- ...+.+|..|+..|..|+..... .-.-++..
T Consensus 237 ~~~~~~~a~~~L~nL~~~~~~~--~~~~~~i~~Lv~lL~---------~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g 305 (644)
T 2z6h_A 237 SQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLG---------SDDINVVTCAAGILSNLTCNNYKNKMMVCQVG 305 (644)
T ss_dssp CHHHHHHHHHHHHHHGGGCTTC--CSCHHHHHHHHHHTT---------CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHhhcchhh--hhhhhHHHHHHHHHc---------CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence 4566666777777777654321 234467777776652 24579999999999999763110 00011222
Q ss_pred HHHHHHHHhcCCCCCchhhhHHHHHHHhhC
Q 011039 260 LTKTLLNALLDPKRALTQHYGAVQGLAALG 289 (495)
Q Consensus 260 I~~tL~k~llDp~k~l~t~YGAI~GL~aLG 289 (495)
.+..|.+.+.+.........-|+..|..|.
T Consensus 306 ~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~ 335 (644)
T 2z6h_A 306 GIEALVRTVLRAGDREDITEPAICALRHLT 335 (644)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHccCCcHHHHHHHHHHHHHHh
Confidence 455666666543333466777888888773
No 77
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=40.53 E-value=16 Score=30.53 Aligned_cols=50 Identities=22% Similarity=0.393 Sum_probs=39.3
Q ss_pred CcchHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCchhhhHHHHHHHhhCH
Q 011039 229 DNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGP 290 (495)
Q Consensus 229 ~~hw~LRd~AA~lL~~I~~kf~~sy~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~ 290 (495)
+.+|.+|..|+..|+.+.. ++.+..|.+.+.|+ .....+.|+.+|..+|.
T Consensus 53 d~~~~vR~~A~~aL~~~~~----------~~a~~~L~~~L~d~--~~~VR~~A~~aL~~~~~ 102 (131)
T 1te4_A 53 NEDWRIRGAAAWIIGNFQD----------ERAVEPLIKLLEDD--SGFVRSGAARSLEQIGG 102 (131)
T ss_dssp CSCHHHHHHHHHHHGGGCS----------HHHHHHHHHHHHHC--CTHHHHHHHHHHHHHCS
T ss_pred CCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCc
Confidence 4679999999999988742 35567777777654 56788999999999985
No 78
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=38.54 E-value=8.6 Score=30.61 Aligned_cols=20 Identities=10% Similarity=0.106 Sum_probs=17.5
Q ss_pred CCCCCCCCChhHHHHHHHhc
Q 011039 2 RHSRRTTLTTDDVDEALKLR 21 (495)
Q Consensus 2 rHsKR~kLTt~DIn~ALr~~ 21 (495)
+|.+|++++.+||-.|++.+
T Consensus 51 ~~~~rKTI~~~dI~~A~~~l 70 (76)
T 3b0c_W 51 FENKSKIIKPEHTIAAAKVI 70 (76)
T ss_dssp HHHTCSSBCHHHHHHHHHHH
T ss_pred HHcCCCCCCHHHHHHHHHHH
Confidence 47899999999999999853
No 79
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=37.77 E-value=6.8 Score=34.15 Aligned_cols=19 Identities=42% Similarity=0.643 Sum_probs=17.3
Q ss_pred CCCCCCCCChhHHHHHHHh
Q 011039 2 RHSRRTTLTTDDVDEALKL 20 (495)
Q Consensus 2 rHsKR~kLTt~DIn~ALr~ 20 (495)
+|++|++.+++||..|+|-
T Consensus 76 kHAgRkTI~~eDV~La~Rr 94 (113)
T 4dra_A 76 RHAKRTTINTEDVKLLARR 94 (113)
T ss_dssp HHTTCSEECHHHHHHHTTT
T ss_pred HhcCCCccCHHHHHHHHHh
Confidence 6999999999999998874
No 80
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=36.93 E-value=3.7e+02 Score=27.66 Aligned_cols=114 Identities=18% Similarity=0.260 Sum_probs=73.3
Q ss_pred hhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCchhhhHHHHHHH
Q 011039 207 LHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLA 286 (495)
Q Consensus 207 LHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~sy~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~ 286 (495)
+.+++|.++.... +..-++|.+.+.+|+..|.+ ...+-++++.+|...|.|+ ...+.=.+|.+..
T Consensus 61 l~~fl~~il~f~~---------d~~~~vRk~~a~FieEa~~~----~~el~~~~l~~L~~LL~d~--d~~V~K~~I~~~t 125 (386)
T 3o2t_A 61 LDNFLDEIIAFQA---------DKSIEVRKFVIGFIEEACKR----DIELLLKLIANLNMLLRDE--NVNVVKKAILTMT 125 (386)
T ss_dssp GGGGHHHHHGGGG---------CSCHHHHHHHHHHHHHHHHH----CGGGHHHHHHHHHHHHTCS--SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc---------CCcHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHH
Confidence 3555555554432 33568999999999999986 5677899999999888753 4455557777777
Q ss_pred hhCHHHHHHhh-ccCh----HHHHHhhhHh---Hhhh-hhhhhhhhhHHHHHHHHHHH
Q 011039 287 ALGPNVVRLLL-LPNL----GPYLSLLEPE---MLLE-KQKNEVKRHEAWRVYGALLQ 335 (495)
Q Consensus 287 aLG~~aVr~ll-lP~L----~~y~~~Le~~---l~~~-~~~~~~~r~ea~~v~~aLl~ 335 (495)
.+=+.+++.++ -|+. ...|+.+..- +..- ...|..+|..|.|+...++-
T Consensus 126 slYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl 183 (386)
T 3o2t_A 126 QLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIV 183 (386)
T ss_dssp HHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHH
Confidence 77677776654 3443 3566554322 1110 12456677777777776654
No 81
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=36.06 E-value=58 Score=36.18 Aligned_cols=133 Identities=14% Similarity=0.069 Sum_probs=72.2
Q ss_pred HHHHHhc-cccCCCCCCcc-hHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCchhhhHHHHHHHhhCHH
Q 011039 214 VVTCLVA-KRLGNRLADNH-WELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGPN 291 (495)
Q Consensus 214 vLTCll~-k~l~~~~~~~h-w~LRd~AA~lL~~I~~kf~~sy~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~ 291 (495)
=|-|+++ -++|.-..|.- --+||-||++|+.+ ...... -+++..+.+.+ ........+|++.||..+
T Consensus 222 RLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL-~hLp~e-----~~IL~qLV~~l--~~~~WEVRHGGLLGLKYL--- 290 (800)
T 3oc3_A 222 KIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI-YPLIGP-----NDIIEQLVGFL--DSGDWQVQFSGLIALGYL--- 290 (800)
T ss_dssp HHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-TTTSCS-----CCHHHHHTTGG--GCSCHHHHHHHHHHHHHT---
T ss_pred HHHHHHHhccccccccCeeeeehHHHHHHHHHHH-HhCChh-----HHHHHHHHhhc--CCCCeeehhhhHHHHHHH---
Confidence 3456655 45554333332 35999999999999 444444 24555555432 355689999999999999
Q ss_pred HHHHhhccChHHHHHhhhHhHhhhhhhhhhhhhH-HHHH--------HHHHHHHHHHhHhhhhccCCCCCCCCccchhcc
Q 011039 292 VVRLLLLPNLGPYLSLLEPEMLLEKQKNEVKRHE-AWRV--------YGALLQAAGQCIYDRLKIFPPLSSLPARSVWKT 362 (495)
Q Consensus 292 aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~e-a~~v--------~~aLl~A~g~~~~~~~~~~~~~~~~~~~~~~~~ 362 (495)
..++ ..+......+-..+.+. ++-+|.- |.-+ .+.|+..+=.|+. -. -..|+++.++-.-
T Consensus 291 --~DLL-~~Ld~Vv~aVL~GL~D~---DDDVRAVAAetLiPIA~p~~l~~LL~iLWd~L~----~L-DDLSASTgSVMdL 359 (800)
T 3oc3_A 291 --KEFV-EDKDGLCRKLVSLLSSP---DEDIKLLSAELLCHFPITDSLDLVLEKCWKNIE----SE-ELISVSKTSNLSL 359 (800)
T ss_dssp --GGGC-CCHHHHHHHHHHHTTCS---SHHHHHHHHHHHTTSCCSSTHHHHHHHHHHHHH----TC-CSCCTTHHHHHHH
T ss_pred --HHHH-HHHHHHHHHHHhhcCCc---ccHHHHHHHHHhhhhcchhhHHHHHHHHHHHhh----hh-cccchhhHHHHHH
Confidence 3332 23555555544444332 2333332 2221 3333333333333 33 4466666655554
Q ss_pred cCcccc
Q 011039 363 NGIVAT 368 (495)
Q Consensus 363 ~~~~~~ 368 (495)
=+++.+
T Consensus 360 LAkL~s 365 (800)
T 3oc3_A 360 LTKIYR 365 (800)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 455555
No 82
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=35.65 E-value=9.2 Score=34.49 Aligned_cols=19 Identities=37% Similarity=0.643 Sum_probs=17.5
Q ss_pred CCCCCCCCChhHHHHHHHh
Q 011039 2 RHSRRTTLTTDDVDEALKL 20 (495)
Q Consensus 2 rHsKR~kLTt~DIn~ALr~ 20 (495)
+|++|++.+++||..|+|-
T Consensus 68 kHAGRKTI~~eDVkLa~Rr 86 (140)
T 3vh5_A 68 RHAKRSTITSEDVKLLARR 86 (140)
T ss_dssp HHTTCSEECHHHHHHHHTT
T ss_pred HHcCCCccCHHHHHHHHHh
Confidence 6999999999999999874
No 83
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=33.82 E-value=4.2e+02 Score=30.76 Aligned_cols=136 Identities=11% Similarity=0.058 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHhcCCCcccchhhhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 011039 185 LFALMRVVWNLLQNPHIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTL 264 (495)
Q Consensus 185 L~~llrmv~ALl~N~~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~sy~~L~~RI~~tL 264 (495)
+..+++.+.....++++. ..++|.++..+++-.. +|=.+|..+-.+++..+.-++ ..+.+-+.++..+
T Consensus 510 leav~~~~~~~~e~~~l~-----~~~~~~Ll~~ll~~~~------~~p~l~~~~i~~l~~l~~~~~-~~p~~L~~vL~~l 577 (1204)
T 3a6p_A 510 LESVITQMFRTLNREEIP-----VNDGIELLQMVLNFDT------KDPLILSCVLTNVSALFPFVT-YRPEFLPQVFSKL 577 (1204)
T ss_dssp HHHHHHHHHHHSCTTCCC-----HHHHHHHHHHHHHCCC------SCHHHHHHHHHHHHHHGGGGG-TCGGGHHHHHHHH
T ss_pred HHHHHHHHhccccccccc-----HHHHHHHHHHHHhCCC------CChHHHHHHHHHHHHHHHHHh-cCchHHHHHHHHH
Confidence 444455554444454431 1456667766554211 233699999999988876655 4578889999999
Q ss_pred HHHhcCCCC----------CchhhhHHHHHHHhhCHHHHHHhhccChHHHHHhhhHhHhhhhhhhhhhhhHHHHHHHHHH
Q 011039 265 LNALLDPKR----------ALTQHYGAVQGLAALGPNVVRLLLLPNLGPYLSLLEPEMLLEKQKNEVKRHEAWRVYGALL 334 (495)
Q Consensus 265 ~k~llDp~k----------~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~aLl 334 (495)
.+.+.++.- .-..+.=|-.+|..|..+. ...++|++..+...++..+.... .....|-..++.||+
T Consensus 578 l~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~-~~~L~p~~~~i~~~~~~~l~~~~---~l~~~e~~~L~eal~ 653 (1204)
T 3a6p_A 578 FSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDY-PQLVLPNFDMLYNHVKQLLSNEL---LLTQMEKCALMEALV 653 (1204)
T ss_dssp HHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHC-HHHHGGGHHHHHHHHHHHHHSTT---TSCHHHHHHHHHHHH
T ss_pred HHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHhCcc---cccHHHHHHHHHHHH
Confidence 988876211 1133455666666666554 45568999999988876654221 023455566667665
Q ss_pred HH
Q 011039 335 QA 336 (495)
Q Consensus 335 ~A 336 (495)
..
T Consensus 654 ~i 655 (1204)
T 3a6p_A 654 LI 655 (1204)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 84
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=33.60 E-value=1.4e+02 Score=34.63 Aligned_cols=75 Identities=16% Similarity=0.082 Sum_probs=53.8
Q ss_pred CcchHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCchhhhHHHHHHHhhCHHHHHHhhccChHHHHHhh
Q 011039 229 DNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGPNVVRLLLLPNLGPYLSLL 308 (495)
Q Consensus 229 ~~hw~LRd~AA~lL~~I~~kf~~sy~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~L 308 (495)
...|.+|.-|+--|+.||- |+ + +++++.+|.+...|+ ...+..||+.+|.-+|...-... -|++..+.+.|
T Consensus 623 ~~d~~VR~gAalALGli~a--Gn--~--~~~aid~L~~L~~D~--d~~Vrq~Ai~ALG~Ig~gtnna~-~~rva~~l~~L 693 (963)
T 4ady_A 623 SHNAHVRCGTAFALGIACA--GK--G--LQSAIDVLDPLTKDP--VDFVRQAAMIALSMILIQQTEKL-NPQVADINKNF 693 (963)
T ss_dssp CSCHHHHHHHHHHHHHHTS--SS--C--CHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHSTTCCTTT-CTTHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhcc--CC--C--cHHHHHHHHHHccCC--CHHHHHHHHHHHHHHhcCCcccc-chHHHHHHHHH
Confidence 4568999999999999972 22 2 378899998888765 55677899999999987544443 36666555554
Q ss_pred hHhH
Q 011039 309 EPEM 312 (495)
Q Consensus 309 e~~l 312 (495)
....
T Consensus 694 ~~~~ 697 (963)
T 4ady_A 694 LSVI 697 (963)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 85
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=31.76 E-value=1.5e+02 Score=33.84 Aligned_cols=125 Identities=7% Similarity=0.064 Sum_probs=80.6
Q ss_pred CHHHHHHHHHHHHHH---hcCCCcc---cchhhhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCCc
Q 011039 181 NYSLLFALMRVVWNL---LQNPHIQ---IEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYN 254 (495)
Q Consensus 181 nl~~L~~llrmv~AL---l~N~~L~---IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~sy~ 254 (495)
++..+...+..+.++ +.|...+ ..+++.+|++.+..++-+ .+ +.+.|-.+|..+-.++++-++=+.. .+
T Consensus 456 ~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s-~i---~~~~hp~V~~~~~~~l~rys~~~~~-~~ 530 (980)
T 3ibv_A 456 SWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTS-QV---CRHPHPLVQLLYMEILVRYASFFDY-ES 530 (980)
T ss_dssp HHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHS-ST---TTCCCHHHHHHHHHHHHHTGGGGGT-CC
T ss_pred CHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhC-CC---CCCCCHHHHHHHHHHHHHHHHHHhc-Cc
Confidence 355555555555554 3332222 335666777654444332 23 2367999999999999988877754 45
Q ss_pred chHHHHHHHHHH--HhcCCCCCchhhhHHHHHHHhhCHHHHHHhhccChHHHHHhhhHhHh
Q 011039 255 TLQTRLTKTLLN--ALLDPKRALTQHYGAVQGLAALGPNVVRLLLLPNLGPYLSLLEPEML 313 (495)
Q Consensus 255 ~L~~RI~~tL~k--~llDp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l~ 313 (495)
..-+.++..+.. .+.|+++... .-|...|..|-.+ .+..+.|++..++..|++.+.
T Consensus 531 ~~l~~~L~~ll~~~gl~~~~~~V~--~~a~~af~~f~~~-~~~~L~~~~~~il~~l~~lL~ 588 (980)
T 3ibv_A 531 AAIPALIEYFVGPRGIHNTNERVR--PRAWYLFYRFVKS-IKKQVVNYTESSLAMLGDLLN 588 (980)
T ss_dssp TTHHHHHHHHTSTTTTTCCCTTTH--HHHHHHHHHHHHH-TTTTCSSSHHHHHHHTTGGGC
T ss_pred hhHHHHHHHHhccccccCCChhHH--HHHHHHHHHHHHH-hhHHhhhHHHHHHHHHHHhhc
Confidence 667777777777 7766654443 4455566666554 455678999999999988775
No 86
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=29.87 E-value=1.9e+02 Score=32.61 Aligned_cols=98 Identities=10% Similarity=0.054 Sum_probs=58.4
Q ss_pred CHHHHHHHHHHHHHHhcCCCcccchhhhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCC--cc-hH
Q 011039 181 NYSLLFALMRVVWNLLQNPHIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVY--NT-LQ 257 (495)
Q Consensus 181 nl~~L~~llrmv~ALl~N~~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~sy--~~-L~ 257 (495)
+........+.+..|..++...-.--=+-.+|+++.++-.. ....|..||..|+.||..-.... .. ..
T Consensus 508 s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~---------~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~ 578 (810)
T 3now_A 508 SHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEG---------TEKGKRHATQALARIGITINPEVSFSGQRS 578 (810)
T ss_dssp CHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSS---------CHHHHHHHHHHHHHHHHHSCHHHHTTTHHH
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccC---------CHHHHHHHHHHHHHHhcCCChhhhhcchhh
Confidence 34555556777777777765221112245789998887331 23789999999999997532211 00 01
Q ss_pred HHHHHHHHHHhcCCCCCchhhhHHHHHHHhh
Q 011039 258 TRLTKTLLNALLDPKRALTQHYGAVQGLAAL 288 (495)
Q Consensus 258 ~RI~~tL~k~llDp~k~l~t~YGAI~GL~aL 288 (495)
..++..|.+.| +...+.-.++=|+.+|..|
T Consensus 579 ~~aIppLv~LL-~~~~~~l~~~eAl~AL~NL 608 (810)
T 3now_A 579 LDVIRPLLNLL-QQDCTALENFESLMALTNL 608 (810)
T ss_dssp HHTHHHHHHTT-STTSCHHHHHHHHHHHHHH
T ss_pred hcHHHHHHHHh-CCCCcHHHHHHHHHHHHHH
Confidence 22566666654 3444545566678888777
No 87
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=29.19 E-value=3.7e+02 Score=25.84 Aligned_cols=82 Identities=18% Similarity=0.250 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCchhhhHHHHHHHhhCHHHHHHhhccChHHHHHhhhHhH
Q 011039 233 ELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGPNVVRLLLLPNLGPYLSLLEPEM 312 (495)
Q Consensus 233 ~LRd~AA~lL~~I~~kf~~sy~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l 312 (495)
.+|---+..|..|.+. ||.+-+-|.+-+...+.+|+ -.-..-|+-=+.++|.+-.|-+ .|+|+.+..+|.
T Consensus 122 kikIn~~yaLeeIara----nP~l~~~v~rdi~smltskd--~~Dkl~aLnFi~alGen~~~yv-~PfLprL~aLL~--- 191 (253)
T 2db0_A 122 KTKINVSYALEEIAKA----NPMLMASIVRDFMSMLSSKN--REDKLTALNFIEAMGENSFKYV-NPFLPRIINLLH--- 191 (253)
T ss_dssp HHHHHHHHHHHHHHHH----CHHHHHHHHHHHHHHTSCSS--HHHHHHHHHHHHTCCTTTHHHH-GGGHHHHHGGGG---
T ss_pred cceecHHHHHHHHHHh----ChHHHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHHhccCcccc-CcchHHHHHHHc---
Confidence 5677777778888776 78999999999999998655 4556778888899998887765 899998876654
Q ss_pred hhhhhhhhhhhhHHHH
Q 011039 313 LLEKQKNEVKRHEAWR 328 (495)
Q Consensus 313 ~~~~~~~~~~r~ea~~ 328 (495)
..|+++|..|..
T Consensus 192 ----D~deiVRaSaVE 203 (253)
T 2db0_A 192 ----DGDEIVRASAVE 203 (253)
T ss_dssp ----CSSHHHHHHHHH
T ss_pred ----CcchhhhHHHHH
Confidence 236677765544
No 88
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=27.14 E-value=80 Score=26.00 Aligned_cols=57 Identities=16% Similarity=0.064 Sum_probs=39.4
Q ss_pred hHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCchhhhHHHHHHHh
Q 011039 210 LMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAA 287 (495)
Q Consensus 210 LlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~sy~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~a 287 (495)
.+|.++.++ .+.+|.+|..|+..|+.+. .++....|.+.+.|++ ....+-|+.+|..
T Consensus 74 a~~~L~~~L---------~d~~~~VR~~A~~aL~~~~----------~~~a~~~L~~~l~d~~--~~vr~~A~~aL~~ 130 (131)
T 1te4_A 74 AVEPLIKLL---------EDDSGFVRSGAARSLEQIG----------GERVRAAMEKLAETGT--GFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHH---------HHCCTHHHHHHHHHHHHHC----------SHHHHHHHHHHTTSCC--THHHHHHHHHGGG
T ss_pred HHHHHHHHH---------cCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhCCC--HHHHHHHHHHHHh
Confidence 466666665 1567899999999999875 2466777787776543 4566666666653
No 89
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=27.13 E-value=86 Score=31.83 Aligned_cols=144 Identities=10% Similarity=0.104 Sum_probs=64.9
Q ss_pred CHHHHHHHHHHHHHHccCCchHHHHHHHHhhhcCCCccccchhHHHHHHHhhhcCC--CCHHHHHHHHHHHHHHhcCCCc
Q 011039 124 SRELQLYFDKITELAVSRSDSVLFKQALVSLATDSGLHPLVPYFTYFVADEVSRGL--NNYSLLFALMRVVWNLLQNPHI 201 (495)
Q Consensus 124 SkElQlYf~kIt~all~~~d~~~r~~AL~sL~tDpGL~qLLPYfv~FI~e~V~~nl--~nl~~L~~llrmv~ALl~N~~L 201 (495)
+.|+-.+..+-...++...++-.|+.|+-+.. .|.+..|-.+.-+.+++..-+ +|...+..-+.+...+-++...
T Consensus 133 ~~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~---kL~~~~pe~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~ 209 (355)
T 3tjz_B 133 DSTMLQAIERYMKQAIVDKVPSVSSSALVSSL---HLLKCSFDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL 209 (355)
T ss_dssp CTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHH---HHTTTCHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH---HHhccCHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH
Confidence 34444444444444454456667776664433 355555655555555555544 3445555556666666655422
Q ss_pred ccchhhhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCC-cchHHHHHHHHHHHhcCCCCCchhhhH
Q 011039 202 QIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVY-NTLQTRLTKTLLNALLDPKRALTQHYG 280 (495)
Q Consensus 202 ~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~sy-~~L~~RI~~tL~k~llDp~k~l~t~YG 280 (495)
-+..|++.+- + | ...+.|..= .+-+++.++.... +....++.+.+...|. +++-...|.
T Consensus 210 ----a~~kLv~~l~-----~--~--~l~~~~~q~-----~llr~l~~~~~~d~~~~~~~~~~~l~~~L~--~~~~aVvyE 269 (355)
T 3tjz_B 210 ----AVSKMISKFT-----R--H--GLKSPFAYC-----MMIRVASRQLEDEDGSRDSPLFDFIESCLR--NKHEMVVYE 269 (355)
T ss_dssp ----HHHHHHHHHH-----S--S--CCSCHHHHH-----HHHHHHTCC-----------------CCCC--CSSHHHHHH
T ss_pred ----HHHHHHHHHh-----c--C--CCcChHHHH-----HHHHHHHHhccccchhhHHHHHHHHHHHHc--CCChHHHHH
Confidence 2222332211 1 1 112344322 2233334565555 5666777777776664 678889999
Q ss_pred HHHHHHhhCH
Q 011039 281 AVQGLAALGP 290 (495)
Q Consensus 281 AI~GL~aLG~ 290 (495)
|+..+..+..
T Consensus 270 a~k~I~~l~~ 279 (355)
T 3tjz_B 270 AASAIVNLPG 279 (355)
T ss_dssp HHHHHTC---
T ss_pred HHHHHHhccC
Confidence 9999999965
No 90
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=26.27 E-value=3e+02 Score=31.88 Aligned_cols=64 Identities=14% Similarity=0.116 Sum_probs=46.6
Q ss_pred CcchHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCchhhhHHHHHH--HhhCHHH
Q 011039 229 DNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGL--AALGPNV 292 (495)
Q Consensus 229 ~~hw~LRd~AA~lL~~I~~kf~~sy~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL--~aLG~~a 292 (495)
|.+-.+|..|+.-|+.|--.-.+..+.=-..+.+.|.+...|......+.|||+.++ ..+|...
T Consensus 658 D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~~n 723 (963)
T 4ady_A 658 DPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGGRN 723 (963)
T ss_dssp CSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGGGT
T ss_pred CCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCCCc
Confidence 667899999999999996554443332234466778888888888889999999864 4556543
No 91
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=25.31 E-value=30 Score=30.34 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=20.1
Q ss_pred CCCCCCCCChhHHHHHHHhcCCC
Q 011039 2 RHSRRTTLTTDDVDEALKLRNVE 24 (495)
Q Consensus 2 rHsKR~kLTt~DIn~ALr~~nvE 24 (495)
+|.+|++++.+||-.||+.++..
T Consensus 57 ~~~kRKTI~~~Dv~~Al~~l~f~ 79 (128)
T 2byk_B 57 HKQNHKTITAKDILQTLTELDFE 79 (128)
T ss_dssp HHTTCSSCCHHHHHHHHHHTTCT
T ss_pred HHcCCCccCHHHHHHHHHHcCcH
Confidence 47899999999999999997743
No 92
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=23.09 E-value=26 Score=32.66 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=20.0
Q ss_pred CCCCCCCCChhHHHHHHHhcCCC
Q 011039 2 RHSRRTTLTTDDVDEALKLRNVE 24 (495)
Q Consensus 2 rHsKR~kLTt~DIn~ALr~~nvE 24 (495)
+|.+|++++.+||-.||+-++.+
T Consensus 62 ~~~~RKTI~~eDVl~Al~~LgF~ 84 (179)
T 1jfi_B 62 NKSEKKTISPEHVIQALESLGFG 84 (179)
T ss_dssp HHTTCSSBCHHHHHHHHHHHTTG
T ss_pred HHcCCCcCCHHHHHHHHHhcChH
Confidence 47899999999999999977654
No 93
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=22.84 E-value=1.5e+02 Score=26.43 Aligned_cols=92 Identities=13% Similarity=0.091 Sum_probs=54.7
Q ss_pred HHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCchhhhHHHHHHHhh---CHHHHHHhhccChHHHHHhhhHhHhhh-
Q 011039 240 KLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAAL---GPNVVRLLLLPNLGPYLSLLEPEMLLE- 315 (495)
Q Consensus 240 ~lL~~I~~kf~~sy~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aL---G~~aVr~lllP~L~~y~~~Le~~l~~~- 315 (495)
-++..|++---++....-..|+..|.+.|.+ ++....|=|+..|..| |++-+..-+-=|+..+-...+-.-.++
T Consensus 30 ylm~EIA~~T~~s~~~~~~eim~~L~kRL~~--k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp 107 (140)
T 1vdy_A 30 YKLEEICDLLRSSHVSIVKEFSEFILKRLDN--KSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDP 107 (140)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHTS--SSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCT
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHhcC--CCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCc
Confidence 3455555432221223447888999999885 4556889999988877 777777766666654433221111111
Q ss_pred ---hhhhhhhhhHHHHHHHHH
Q 011039 316 ---KQKNEVKRHEAWRVYGAL 333 (495)
Q Consensus 316 ---~~~~~~~r~ea~~v~~aL 333 (495)
+.....+|..|..+..+|
T Consensus 108 ~~G~d~g~~VR~~AkEl~~ll 128 (140)
T 1vdy_A 108 LKGDALNKAVRETAHETISAI 128 (140)
T ss_dssp TTSSCHHHHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHH
Confidence 233456777777776665
No 94
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=21.66 E-value=6.5e+02 Score=25.63 Aligned_cols=102 Identities=15% Similarity=0.166 Sum_probs=57.2
Q ss_pred HHHHHHHHccCCchHHHHHHHHhhh------cCCCcc-----ccchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcCC
Q 011039 131 FDKITELAVSRSDSVLFKQALVSLA------TDSGLH-----PLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNP 199 (495)
Q Consensus 131 f~kIt~all~~~d~~~r~~AL~sL~------tDpGL~-----qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~N~ 199 (495)
.+++++.+.++ |......|+..++ .+|-++ ..+|.|++|+... ++..........+..|..+.
T Consensus 78 l~~lv~~l~s~-d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~-----~~~~~q~~Aa~aL~nia~~~ 151 (529)
T 3tpo_A 78 VEDIVKGINSN-NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKT-----DCSPIQFESAWALTNIASGT 151 (529)
T ss_dssp HHHHHHHHTSS-CHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCT-----TCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCC-----CCHHHHHHHHHHHHHHHcCC
Confidence 45566666653 3333444444332 344443 4589999888532 23344444455555555544
Q ss_pred Ccccch-hhhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHH
Q 011039 200 HIQIEP-YLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICK 247 (495)
Q Consensus 200 ~L~Iep-YLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~ 247 (495)
.-+-.. .-+-.+|.++.++-+ .+-.+|+.|+..|+.|+.
T Consensus 152 ~~~~~~vv~~Gaip~Lv~LL~s---------~~~~v~e~A~~aL~nLa~ 191 (529)
T 3tpo_A 152 SEQTKAVVDGGAIPAFISLLAS---------PHAHISEQAVWALGNIAG 191 (529)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTC---------SCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHcC---------CCHHHHHHHHHHHHHHhc
Confidence 332222 223577877776522 345889999999999873
No 95
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=20.98 E-value=6.4e+02 Score=25.30 Aligned_cols=144 Identities=13% Similarity=0.086 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHccCCchHHHHH---HHHhhhcCCCccccchhHHHHHHHhhhcCCCCHHHHHH-HHHHHHHHhcCCC
Q 011039 125 RELQLYFDKITELAVSRSDSVLFKQ---ALVSLATDSGLHPLVPYFTYFVADEVSRGLNNYSLLFA-LMRVVWNLLQNPH 200 (495)
Q Consensus 125 kElQlYf~kIt~all~~~d~~~r~~---AL~sL~tDpGL~qLLPYfv~FI~e~V~~nl~nl~~L~~-llrmv~ALl~N~~ 200 (495)
.|.-..|-.|++.+-+ +|...++- ++..+...+ +..+ -.++.|.....+ .|- .+.. -+|..-.+..-
T Consensus 64 ~e~t~lf~~v~kl~~s-~d~~lKrLvYLyl~~~~~~~--~e~i-Lv~Nsl~kDl~~--~N~-~iR~lALRtL~~I~~~-- 134 (355)
T 3tjz_B 64 TEATEAFFAMTKLFQS-NDPTLRRMCYLTIKEMSCIA--EDVI-IVTSSLTKDMTG--KED-SYRGPAVRALCQITDS-- 134 (355)
T ss_dssp HHHHHHHHHHHGGGGC-CCHHHHHHHHHHHHHHTTTS--SCGG-GGHHHHHHHHHS--SCH-HHHHHHHHHHHHHCCT--
T ss_pred hHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhCCCH--HHHH-HHHHHHHhhcCC--CcH-hHHHHHHHHHhcCCCH--
Confidence 4555566666665554 45455553 334454443 2222 334444444433 232 2222 36666555433
Q ss_pred cccchhhhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCchhhhH
Q 011039 201 IQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYG 280 (495)
Q Consensus 201 L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~sy~~L~~RI~~tL~k~llDp~k~l~t~YG 280 (495)
..+..+.+.+-.|+.. .|=.+|..|+-...+++.. +|.+-.|.+..+...+.| ++....|.
T Consensus 135 ----~m~~~l~~~lk~~L~d---------~~pyVRk~A~l~~~kL~~~----~pe~v~~~~~~l~~ll~d--~n~~V~~~ 195 (355)
T 3tjz_B 135 ----TMLQAIERYMKQAIVD---------KVPSVSSSALVSSLHLLKC----SFDVVKRWVNEAQEAASS--DNIMVQYH 195 (355)
T ss_dssp ----TTHHHHHHHHHHHHTC---------SSHHHHHHHHHHHHHHTTT----CHHHHHTTHHHHHHHTTC--SSHHHHHH
T ss_pred ----HHHHHHHHHHHHHcCC---------CCHHHHHHHHHHHHHHhcc----CHHHHHHHHHHHHHHhcC--CCccHHHH
Confidence 3466777778888754 3458999999998877654 577777888888888864 56777799
Q ss_pred HHHHHHhhC---HHHHHHh
Q 011039 281 AVQGLAALG---PNVVRLL 296 (495)
Q Consensus 281 AI~GL~aLG---~~aVr~l 296 (495)
|+..|..+. ..++..+
T Consensus 196 Al~lL~ei~~~d~~a~~kL 214 (355)
T 3tjz_B 196 ALGLLYHVRKNDRLAVSKM 214 (355)
T ss_dssp HHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhhchHHHHHH
Confidence 998888773 3455444
No 96
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=20.05 E-value=1.3e+02 Score=28.89 Aligned_cols=70 Identities=23% Similarity=0.378 Sum_probs=46.4
Q ss_pred CCcchHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCchhhhH-HHHHHHhhCHHHHHHhhccCh
Q 011039 228 ADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYG-AVQGLAALGPNVVRLLLLPNL 301 (495)
Q Consensus 228 ~~~hw~LRd~AA~lL~~I~~kf~~sy~~L~~RI~~tL~k~llDp~k~l~t~YG-AI~GL~aLG~~aVr~lllP~L 301 (495)
.||-|.+|..|-.++..|.+.|..-|..+...++-.+. .++.-|+++-.- |+--++..-|+-|+.+ +|-+
T Consensus 42 DDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~---ksEaIpltqeIa~a~G~la~i~Pe~v~~v-Vp~l 112 (253)
T 2db0_A 42 DDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLK---KSEAIPLTQEIAKAFGQMAKEKPELVKSM-IPVL 112 (253)
T ss_dssp TCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH---HCCSHHHHHHHHHHHHHHHHHCHHHHHHH-HHHH
T ss_pred ccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHh---hcccCchHHHHHHHHhHHHHhCHHHHHhh-HHHH
Confidence 58999999999999999988766655555555444443 245556654443 3333455588888886 4433
Done!