Query 011042
Match_columns 495
No_of_seqs 343 out of 1796
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 07:27:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011042.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011042hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 1E-74 2.3E-79 606.1 40.8 394 77-495 23-428 (431)
2 KOG1339 Aspartyl protease [Pos 100.0 5E-59 1.1E-63 484.6 37.4 337 150-495 41-396 (398)
3 cd05472 cnd41_like Chloroplast 100.0 4.9E-58 1.1E-62 460.3 32.1 295 155-495 1-299 (299)
4 cd05489 xylanase_inhibitor_I_l 100.0 4.3E-57 9.3E-62 463.3 31.5 316 162-493 2-361 (362)
5 cd06096 Plasmepsin_5 Plasmepsi 100.0 2.3E-55 5E-60 446.1 31.0 293 154-495 2-325 (326)
6 cd05490 Cathepsin_D2 Cathepsin 100.0 1E-54 2.2E-59 441.3 33.9 299 151-492 2-325 (325)
7 cd05478 pepsin_A Pepsin A, asp 100.0 7.2E-55 1.6E-59 440.9 31.7 295 151-492 6-317 (317)
8 PTZ00165 aspartyl protease; Pr 100.0 2.4E-54 5.2E-59 455.1 34.0 307 141-495 109-448 (482)
9 cd05477 gastricsin Gastricsins 100.0 1.4E-53 3.1E-58 431.7 33.4 296 153-493 1-318 (318)
10 cd05486 Cathespin_E Cathepsin 100.0 1.6E-53 3.6E-58 430.8 30.9 293 156-492 1-316 (316)
11 cd05488 Proteinase_A_fungi Fun 100.0 5.1E-53 1.1E-57 427.9 32.8 294 151-492 6-320 (320)
12 cd05485 Cathepsin_D_like Cathe 100.0 2.1E-52 4.5E-57 424.9 33.0 296 151-492 7-329 (329)
13 cd06098 phytepsin Phytepsin, a 100.0 2.7E-52 5.8E-57 422.0 32.7 286 151-492 6-317 (317)
14 cd05487 renin_like Renin stimu 100.0 3.8E-52 8.2E-57 422.6 33.0 298 151-493 4-326 (326)
15 PTZ00147 plasmepsin-1; Provisi 100.0 1.8E-51 4E-56 430.2 34.4 303 140-494 127-450 (453)
16 cd05473 beta_secretase_like Be 100.0 4.6E-51 1E-55 420.7 30.2 308 154-495 2-347 (364)
17 PTZ00013 plasmepsin 4 (PM4); P 100.0 2E-50 4.3E-55 421.6 34.0 303 140-494 126-449 (450)
18 cd05475 nucellin_like Nucellin 100.0 6.2E-51 1.3E-55 403.6 27.7 254 154-495 1-273 (273)
19 cd05476 pepsin_A_like_plant Ch 100.0 1.3E-50 2.8E-55 399.6 28.3 258 155-495 1-265 (265)
20 cd06097 Aspergillopepsin_like 100.0 3.1E-48 6.8E-53 385.3 27.9 262 156-492 1-278 (278)
21 cd05474 SAP_like SAPs, pepsin- 100.0 3.9E-47 8.4E-52 380.3 28.6 271 155-493 2-295 (295)
22 PF00026 Asp: Eukaryotic aspar 100.0 2.9E-46 6.4E-51 377.0 23.9 294 155-493 1-317 (317)
23 cd05471 pepsin_like Pepsin-lik 100.0 2.3E-44 5E-49 357.0 28.8 266 156-492 1-283 (283)
24 PF14543 TAXi_N: Xylanase inhi 100.0 2.3E-32 4.9E-37 249.9 15.5 155 156-319 1-164 (164)
25 PF14541 TAXi_C: Xylanase inhi 100.0 1.1E-28 2.4E-33 225.2 14.0 151 340-492 1-161 (161)
26 cd05470 pepsin_retropepsin_lik 99.9 8.8E-24 1.9E-28 179.8 12.9 105 158-281 1-109 (109)
27 cd05483 retropepsin_like_bacte 98.1 1.1E-05 2.4E-10 66.1 7.6 94 154-283 1-94 (96)
28 TIGR02281 clan_AA_DTGA clan AA 96.8 0.01 2.2E-07 51.3 9.3 96 152-283 8-103 (121)
29 PF13650 Asp_protease_2: Aspar 96.5 0.026 5.7E-07 45.2 9.5 89 158-282 1-89 (90)
30 cd05479 RP_DDI RP_DDI; retrope 95.5 0.047 1E-06 47.3 7.1 33 458-490 92-124 (124)
31 cd05479 RP_DDI RP_DDI; retrope 94.2 0.43 9.4E-06 41.2 9.6 92 153-283 14-107 (124)
32 TIGR02281 clan_AA_DTGA clan AA 92.7 2.5 5.4E-05 36.3 11.8 37 337-391 8-44 (121)
33 PF11925 DUF3443: Protein of u 91.3 11 0.00023 38.7 15.8 105 156-285 24-150 (370)
34 PF08284 RVP_2: Retroviral asp 90.9 0.59 1.3E-05 41.1 6.0 28 466-493 105-132 (135)
35 cd05484 retropepsin_like_LTR_2 89.9 0.31 6.7E-06 39.5 3.1 29 156-186 1-29 (91)
36 TIGR03698 clan_AA_DTGF clan AA 89.3 1.8 3.9E-05 36.4 7.4 24 465-488 84-107 (107)
37 cd06095 RP_RTVL_H_like Retrope 88.0 4 8.7E-05 32.6 8.4 26 159-186 2-27 (86)
38 PF13975 gag-asp_proteas: gag- 86.3 1.1 2.3E-05 34.7 3.9 35 152-188 5-39 (72)
39 COG3577 Predicted aspartyl pro 82.7 9.4 0.0002 35.8 8.9 84 151-266 101-184 (215)
40 PF13650 Asp_protease_2: Aspar 81.8 1.8 4E-05 34.2 3.7 20 372-391 12-31 (90)
41 PF00077 RVP: Retroviral aspar 80.5 2 4.3E-05 35.2 3.5 28 157-186 7-34 (100)
42 PF12384 Peptidase_A2B: Ty3 tr 78.5 18 0.00039 32.8 8.9 20 372-391 48-67 (177)
43 cd05484 retropepsin_like_LTR_2 77.6 3.3 7.2E-05 33.3 3.9 30 347-391 4-33 (91)
44 PF13975 gag-asp_proteas: gag- 72.5 5.3 0.00012 30.8 3.7 29 348-391 13-41 (72)
45 cd05483 retropepsin_like_bacte 71.9 6.2 0.00013 31.4 4.2 20 372-391 16-35 (96)
46 PF09668 Asp_protease: Asparty 69.9 7.7 0.00017 33.6 4.4 30 347-391 28-57 (124)
47 cd05482 HIV_retropepsin_like R 67.5 5.5 0.00012 32.2 2.9 25 159-185 2-26 (87)
48 cd06095 RP_RTVL_H_like Retrope 65.2 8.4 0.00018 30.7 3.6 29 348-391 3-31 (86)
49 PF00077 RVP: Retroviral aspar 55.3 9 0.00019 31.2 2.2 16 372-387 19-34 (100)
50 COG3577 Predicted aspartyl pro 53.1 27 0.00058 32.8 5.0 38 336-391 101-138 (215)
51 cd05481 retropepsin_like_LTR_1 46.3 24 0.00051 28.7 3.3 21 372-392 13-33 (93)
52 cd06094 RP_Saci_like RP_Saci_l 45.3 1.2E+02 0.0026 24.7 7.0 21 369-389 9-29 (89)
53 PF07172 GRP: Glycine rich pro 40.4 19 0.00042 29.6 1.9 18 1-19 1-18 (95)
54 PF12384 Peptidase_A2B: Ty3 tr 36.3 40 0.00087 30.6 3.3 29 157-185 34-62 (177)
55 KOG0012 DNA damage inducible p 34.4 2.9E+02 0.0063 28.4 9.3 38 455-492 307-345 (380)
56 COG5550 Predicted aspartyl pro 33.7 31 0.00067 29.7 2.1 20 372-391 29-49 (125)
57 PF09668 Asp_protease: Asparty 30.1 71 0.0015 27.6 3.8 35 154-190 23-57 (124)
58 PF02160 Peptidase_A3: Caulifl 27.5 1.8E+02 0.0039 27.4 6.3 26 465-491 91-116 (201)
59 cd05470 pepsin_retropepsin_lik 26.3 48 0.001 27.1 2.1 17 372-388 14-30 (109)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=1e-74 Score=606.09 Aligned_cols=394 Identities=34% Similarity=0.708 Sum_probs=331.8
Q ss_pred CceEEEEecCCCCCCCCCCCCCCCCCCCchhHHHHHHhhHHhHHHHHHHhcCCCCCCCccccccceeeeecccCCCcceE
Q 011042 77 ARWNLELVHRDKMSSSSNTTNNMHYHRHQHSFHARMQRDVKRVATLVRRLSGGGADAAKHEVQDFGTDVVSGMDQGSGEY 156 (495)
Q Consensus 77 ~~~~l~l~hr~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~R~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~Y 156 (495)
++++++|+||+++|+|.+++ ..+..++++++++|+.+|++++.++.. ...|+..+...++++|
T Consensus 23 ~~~~~~l~h~~~~~sp~~~~----~~~~~~~~~~~~~~~~~r~~~~~~~~~-------------~~~~~~~~~~~~~~~Y 85 (431)
T PLN03146 23 GGFTVDLIHRDSPKSPFYNP----SETPSQRLRNAFRRSISRVNHFRPTDA-------------SPNDPQSDLISNGGEY 85 (431)
T ss_pred CceEEEEEeCCCCCCCCCCC----CCChhHHHHHHHHHHHHHHHHHhhccc-------------cCCccccCcccCCccE
Confidence 47999999999999986442 345678899999999999988864421 1134555555677899
Q ss_pred EEEEeeCCCCceeeEEEecCCCceeEecCCCCCcccCCCCccCCCCCCccccccCCChhcccccCC-CCCC-CCceeeee
Q 011042 157 FVRIGVGSPPRSQYMVIDSGSDIVWVQCQPCSQCYKQSDPVFDPADSASFSGVSCSSAVCDRLENA-GCHA-GRCRYEVS 234 (495)
Q Consensus 157 ~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~-~C~~-~~~~~~~~ 234 (495)
+++|+||||||++.|+|||||+++||+|.+|..|+.|.++.|||++|+||+.++|.++.|..+... .|.. +.|.|.+.
T Consensus 86 ~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~~~c~~~~~c~y~i~ 165 (431)
T PLN03146 86 LMNISIGTPPVPILAIADTGSDLIWTQCKPCDDCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQASCSDENTCTYSYS 165 (431)
T ss_pred EEEEEcCCCCceEEEEECCCCCcceEcCCCCcccccCCCCcccCCCCCCCcccCCCCcccccCCCCCCCCCCCCCeeEEE
Confidence 999999999999999999999999999999999999999999999999999999999999887654 3754 56999999
Q ss_pred eCCCCeEEEEEEEEEEEECC-----EEeeeeEEEEEEecCCCC-CCcceEEeeCCCCCCccccccCccCCeEEEEeecCC
Q 011042 235 YGDGSYTKGTLALETLTIGR-----TVVKNVAIGCGHKNQGMF-VGAAGLLGLGGGSMSLVGQLGGQTGGAFSYCLVSRG 308 (495)
Q Consensus 235 YgdGs~~~G~~~~Dtvt~g~-----~~~~~~~fG~~~~~~g~f-~~~~GIlGLg~~~~s~~~ql~~~~~~~FS~cL~~~~ 308 (495)
|+||+.+.|++++|+|+|++ ..++++.|||++.+.+.| ...+||||||++++|+++|+.....++|||||.+..
T Consensus 166 Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~f~~~~~GilGLG~~~~Sl~sql~~~~~~~FSycL~~~~ 245 (431)
T PLN03146 166 YGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGTFDEKGSGIVGLGGGPLSLISQLGSSIGGKFSYCLVPLS 245 (431)
T ss_pred eCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCCccCCCceeEecCCCCccHHHHhhHhhCCcEEEECCCCC
Confidence 99999889999999999976 468999999999988877 468999999999999999998655679999998643
Q ss_pred C--CCcceEEecccC-CC-CCceEEecccCCCCCeEEEEEeeeeEecCeeeccccccccccccCCCcEEEccCCceeeec
Q 011042 309 T--GSSGSLVFGREA-LP-VGAAWVPLVRNPRAPSFYYVGLSGLGVGGMRIPISEDLFRLTQMGDDGVVMDTGTAVTRLP 384 (495)
Q Consensus 309 ~--~~~G~L~fGg~~-~~-~~~~~tpl~~~~~~~~~y~v~l~gisvgg~~l~i~~~~~~~~~~g~~~~iiDSGTt~t~lp 384 (495)
+ ...|.|+||+.. +. +.+.||||+.+. .+.+|+|.|++|+||++.++++...|. ..+.+++||||||++|+||
T Consensus 246 ~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~-~~~~y~V~L~gIsVgg~~l~~~~~~~~--~~~~g~~iiDSGTt~t~Lp 322 (431)
T PLN03146 246 SDSNGTSKINFGTNAIVSGSGVVSTPLVSKD-PDTFYYLTLEAISVGSKKLPYTGSSKN--GVEEGNIIIDSGTTLTLLP 322 (431)
T ss_pred CCCCCcceEEeCCccccCCCCceEcccccCC-CCCeEEEeEEEEEECCEECcCCccccc--cCCCCcEEEeCCccceecC
Confidence 2 247999999865 33 458999998542 367999999999999999998877664 3456789999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCCcccccccccccCcccccccEEEEEEeCCCEEEeCCCCeEEEecCCCceEEEEEecCC
Q 011042 385 TPAYEAFRDAFVAQTGNLPRASGVSIFDTCYNLSGFVSVRVPTVSFYFSGGPVLTLPASNFLIPVDDAGTFCFAFAPSPS 464 (495)
Q Consensus 385 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~gg~~~~l~~~~y~~~~~~~~~~Cl~~~~~~~ 464 (495)
+++|++|+++|.+.+...+.......+++||+... ...+|+|+|+|+ |++++|++++|+++.. .+..|+++.+..
T Consensus 323 ~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~--~~~~P~i~~~F~-Ga~~~l~~~~~~~~~~-~~~~Cl~~~~~~- 397 (431)
T PLN03146 323 SDFYSELESAVEEAIGGERVSDPQGLLSLCYSSTS--DIKLPIITAHFT-GADVKLQPLNTFVKVS-EDLVCFAMIPTS- 397 (431)
T ss_pred HHHHHHHHHHHHHHhccccCCCCCCCCCccccCCC--CCCCCeEEEEEC-CCeeecCcceeEEEcC-CCcEEEEEecCC-
Confidence 99999999999998853332233334669998532 257899999998 8999999999999876 467899998753
Q ss_pred CceeecHhhhcceEEEEECCCCEEEEeeCCC
Q 011042 465 GLSIIGNIQQEGIQISFDGANGFVGFGPNVC 495 (495)
Q Consensus 465 ~~~IlG~~fl~~~yvvfD~~~~~IGFa~~~C 495 (495)
+.||||+.|||++||+||++++|||||+.+|
T Consensus 398 ~~~IlG~~~q~~~~vvyDl~~~~igFa~~~C 428 (431)
T PLN03146 398 SIAIFGNLAQMNFLVGYDLESKTVSFKPTDC 428 (431)
T ss_pred CceEECeeeEeeEEEEEECCCCEEeeecCCc
Confidence 4699999999999999999999999999999
No 2
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-59 Score=484.64 Aligned_cols=337 Identities=42% Similarity=0.816 Sum_probs=284.9
Q ss_pred CCCcceEEEEEeeCCCCceeeEEEecCCCceeEecCCCC-CcccCCCCccCCCCCCccccccCCChhcccccCCCCCCCC
Q 011042 150 DQGSGEYFVRIGVGSPPRSQYMVIDSGSDIVWVQCQPCS-QCYKQSDPVFDPADSASFSGVSCSSAVCDRLENAGCHAGR 228 (495)
Q Consensus 150 ~~~~~~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~C~-~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~~C~~~~ 228 (495)
...+++|+++|.||||||+|.|++||||+++||+|.+|. .|+.+.++.|||++|+||+.+.|.++.|.......|.+..
T Consensus 41 ~~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~~~~~~~~~ 120 (398)
T KOG1339|consen 41 SYSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSSACYSQHNPIFDPSASSTYKSVGCSSPRCKSLPQSCSPNSS 120 (398)
T ss_pred cccccccEEEEecCCCCeeeEEEEeCCCCceeeccccccccccccCCCccCccccccccccCCCCccccccccCcccCCc
Confidence 356789999999999999999999999999999999999 8998777779999999999999999999999877555689
Q ss_pred ceeeeeeCCCCeEEEEEEEEEEEECC---EEeeeeEEEEEEecCCCC---CCcceEEeeCCCCCCccccccCccC--CeE
Q 011042 229 CRYEVSYGDGSYTKGTLALETLTIGR---TVVKNVAIGCGHKNQGMF---VGAAGLLGLGGGSMSLVGQLGGQTG--GAF 300 (495)
Q Consensus 229 ~~~~~~YgdGs~~~G~~~~Dtvt~g~---~~~~~~~fG~~~~~~g~f---~~~~GIlGLg~~~~s~~~ql~~~~~--~~F 300 (495)
|.|.+.|+||+.++|++++|+|+|++ ..++++.|||+..+.+.+ ...+||||||++++++++|+..... ++|
T Consensus 121 C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~~~~~~~~~FGc~~~~~g~~~~~~~~dGIlGLg~~~~S~~~q~~~~~~~~~~F 200 (398)
T KOG1339|consen 121 CPYSIQYGDGSSTSGYLATDTVTFGGTTSLPVPNQTFGCGTNNPGSFGLFAAFDGILGLGRGSLSVPSQLPSFYNAINVF 200 (398)
T ss_pred CceEEEeCCCCceeEEEEEEEEEEccccccccccEEEEeeecCccccccccccceEeecCCCCccceeecccccCCceeE
Confidence 99999999988889999999999987 778889999999997642 3589999999999999999987543 359
Q ss_pred EEEeecCCCC--CcceEEecccC---CCCCceEEecccCCCCCeEEEEEeeeeEecCeeeccccccccccccCCCcEEEc
Q 011042 301 SYCLVSRGTG--SSGSLVFGREA---LPVGAAWVPLVRNPRAPSFYYVGLSGLGVGGMRIPISEDLFRLTQMGDDGVVMD 375 (495)
Q Consensus 301 S~cL~~~~~~--~~G~L~fGg~~---~~~~~~~tpl~~~~~~~~~y~v~l~gisvgg~~l~i~~~~~~~~~~g~~~~iiD 375 (495)
||||.+.... ..|.|+||+.+ +.+.+.|+||+.++. .||+|.+++|+||++. .+++..+.. +.+++|+|
T Consensus 201 S~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~--~~y~v~l~~I~vgg~~-~~~~~~~~~---~~~~~iiD 274 (398)
T KOG1339|consen 201 SYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPS--TYYQVNLDGISVGGKR-PIGSSLFCT---DGGGAIID 274 (398)
T ss_pred EEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCC--ccEEEEEeEEEECCcc-CCCcceEec---CCCCEEEE
Confidence 9999987543 47999999987 667899999976543 6999999999999988 666666642 25789999
Q ss_pred cCCceeeecHHHHHHHHHHHHHhhCCCCCCCCcccccccccccCcccccccEEEEEEeCCCEEEeCCCCeEEEecCCCce
Q 011042 376 TGTAVTRLPTPAYEAFRDAFVAQTGNLPRASGVSIFDTCYNLSGFVSVRVPTVSFYFSGGPVLTLPASNFLIPVDDAGTF 455 (495)
Q Consensus 376 SGTt~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~gg~~~~l~~~~y~~~~~~~~~~ 455 (495)
|||++++||+++|++|.++|.+.++ ..... ...+..||...... ..+|+|+|+|++|+.|.|++++|+++.......
T Consensus 275 SGTs~t~lp~~~y~~i~~~~~~~~~-~~~~~-~~~~~~C~~~~~~~-~~~P~i~~~f~~g~~~~l~~~~y~~~~~~~~~~ 351 (398)
T KOG1339|consen 275 SGTSLTYLPTSAYNALREAIGAEVS-VVGTD-GEYFVPCFSISTSG-VKLPDITFHFGGGAVFSLPPKNYLVEVSDGGGV 351 (398)
T ss_pred CCcceeeccHHHHHHHHHHHHhhee-ccccC-CceeeecccCCCCc-ccCCcEEEEECCCcEEEeCccceEEEECCCCCc
Confidence 9999999999999999999998741 01111 22244899874433 459999999988899999999999988742222
Q ss_pred EEEEEecC-C-CceeecHhhhcceEEEEECC-CCEEEEee--CCC
Q 011042 456 CFAFAPSP-S-GLSIIGNIQQEGIQISFDGA-NGFVGFGP--NVC 495 (495)
Q Consensus 456 Cl~~~~~~-~-~~~IlG~~fl~~~yvvfD~~-~~~IGFa~--~~C 495 (495)
|+++.... . ..||||+.|||+++++||.. ++|||||+ ..|
T Consensus 352 Cl~~~~~~~~~~~~ilG~~~~~~~~~~~D~~~~~riGfa~~~~~c 396 (398)
T KOG1339|consen 352 CLAFFNGMDSGPLWILGDVFQQNYLVVFDLGENSRVGFAPALTNC 396 (398)
T ss_pred eeeEEecCCCCceEEEchHHhCCEEEEEeCCCCCEEEeccccccC
Confidence 99776653 3 47999999999999999999 99999999 776
No 3
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=4.9e-58 Score=460.31 Aligned_cols=295 Identities=57% Similarity=1.052 Sum_probs=253.9
Q ss_pred eEEEEEeeCCCCceeeEEEecCCCceeEecCCCCCcccCCCCccCCCCCCccccccCCChhcccccCCCCCCCCceeeee
Q 011042 155 EYFVRIGVGSPPRSQYMVIDSGSDIVWVQCQPCSQCYKQSDPVFDPADSASFSGVSCSSAVCDRLENAGCHAGRCRYEVS 234 (495)
Q Consensus 155 ~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~~C~~~~~~~~~~ 234 (495)
+|+++|.||||||++.|+|||||+++||+|.+| |.|.+.
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c-----------------------------------------~~~~i~ 39 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC-----------------------------------------CLYQVS 39 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCCCC-----------------------------------------CeeeeE
Confidence 599999999999999999999999999988765 468999
Q ss_pred eCCCCeEEEEEEEEEEEECCE-EeeeeEEEEEEecCCCCCCcceEEeeCCCCCCccccccCccCCeEEEEeecCCCCCcc
Q 011042 235 YGDGSYTKGTLALETLTIGRT-VVKNVAIGCGHKNQGMFVGAAGLLGLGGGSMSLVGQLGGQTGGAFSYCLVSRGTGSSG 313 (495)
Q Consensus 235 YgdGs~~~G~~~~Dtvt~g~~-~~~~~~fG~~~~~~g~f~~~~GIlGLg~~~~s~~~ql~~~~~~~FS~cL~~~~~~~~G 313 (495)
|++|+.++|.+++|+|+|++. .++++.|||++...+.+...+||||||++.++++.|+....+++||+||.+......|
T Consensus 40 Yg~Gs~~~G~~~~D~v~ig~~~~~~~~~Fg~~~~~~~~~~~~~GilGLg~~~~s~~~ql~~~~~~~FS~~L~~~~~~~~G 119 (299)
T cd05472 40 YGDGSYTTGDLATDTLTLGSSDVVPGFAFGCGHDNEGLFGGAAGLLGLGRGKLSLPSQTASSYGGVFSYCLPDRSSSSSG 119 (299)
T ss_pred eCCCceEEEEEEEEEEEeCCCCccCCEEEECCccCCCccCCCCEEEECCCCcchHHHHhhHhhcCceEEEccCCCCCCCc
Confidence 999998899999999999987 8999999999988777777899999999999999998776778999999875423479
Q ss_pred eEEecccCC-CCCceEEecccCCCCCeEEEEEeeeeEecCeeeccccccccccccCCCcEEEccCCceeeecHHHHHHHH
Q 011042 314 SLVFGREAL-PVGAAWVPLVRNPRAPSFYYVGLSGLGVGGMRIPISEDLFRLTQMGDDGVVMDTGTAVTRLPTPAYEAFR 392 (495)
Q Consensus 314 ~L~fGg~~~-~~~~~~tpl~~~~~~~~~y~v~l~gisvgg~~l~i~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~~~~l~ 392 (495)
+|+||+.|. .+++.|+|++.++....+|.|++++|+||++.+.+++... +...+||||||++++||+++|++|.
T Consensus 120 ~l~fGg~d~~~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~-----~~~~~ivDSGTt~~~lp~~~~~~l~ 194 (299)
T cd05472 120 YLSFGAAASVPAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASF-----GAGGVIIDSGTVITRLPPSAYAALR 194 (299)
T ss_pred eEEeCCccccCCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCcccc-----CCCCeEEeCCCcceecCHHHHHHHH
Confidence 999999883 5889999998765456799999999999999987643222 2567999999999999999999999
Q ss_pred HHHHHhhCCCCCCCCcccccccccccCcccccccEEEEEEeCCCEEEeCCCCeEEEecCCCceEEEEEecC--CCceeec
Q 011042 393 DAFVAQTGNLPRASGVSIFDTCYNLSGFVSVRVPTVSFYFSGGPVLTLPASNFLIPVDDAGTFCFAFAPSP--SGLSIIG 470 (495)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~gg~~~~l~~~~y~~~~~~~~~~Cl~~~~~~--~~~~IlG 470 (495)
+++.+.+...+...+...++.||+.++.....+|+|+|+|++|++++|++++|+++....+..|++|...+ .+.+|||
T Consensus 195 ~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~~g~~~~l~~~~y~~~~~~~~~~C~~~~~~~~~~~~~ilG 274 (299)
T cd05472 195 DAFRAAMAAYPRAPGFSILDTCYDLSGFRSVSVPTVSLHFQGGADVELDASGVLYPVDDSSQVCLAFAGTSDDGGLSIIG 274 (299)
T ss_pred HHHHHHhccCCCCCCCCCCCccCcCCCCcCCccCCEEEEECCCCEEEeCcccEEEEecCCCCEEEEEeCCCCCCCCEEEc
Confidence 99998865443344445565799887665678999999998789999999999995444567899888753 4579999
Q ss_pred HhhhcceEEEEECCCCEEEEeeCCC
Q 011042 471 NIQQEGIQISFDGANGFVGFGPNVC 495 (495)
Q Consensus 471 ~~fl~~~yvvfD~~~~~IGFa~~~C 495 (495)
+.|||++|+|||++++|||||+.+|
T Consensus 275 ~~fl~~~~vvfD~~~~~igfa~~~C 299 (299)
T cd05472 275 NVQQQTFRVVYDVAGGRIGFAPGGC 299 (299)
T ss_pred hHHccceEEEEECCCCEEeEecCCC
Confidence 9999999999999999999999999
No 4
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=4.3e-57 Score=463.29 Aligned_cols=316 Identities=28% Similarity=0.535 Sum_probs=262.9
Q ss_pred eCCCCce-eeEEEecCCCceeEecCCCCCcccCCCCccCCCCCCccccccCCChhcccccCC------------CCCCCC
Q 011042 162 VGSPPRS-QYMVIDSGSDIVWVQCQPCSQCYKQSDPVFDPADSASFSGVSCSSAVCDRLENA------------GCHAGR 228 (495)
Q Consensus 162 iGTP~q~-~~l~~DTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~------------~C~~~~ 228 (495)
+|||-.+ +.|+|||||+++||||.+ .+|+||+.++|+++.|..+... .|.++.
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~--------------~~sst~~~~~C~s~~C~~~~~~~~~~~~~~~~~~~c~~~~ 67 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDA--------------GHSSTYQTVPCSSSVCSLANRYHCPGTCGGAPGPGCGNNT 67 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCC--------------CCcCCCCccCcCChhhccccccCCCccccCCCCCCCCCCc
Confidence 5888888 999999999999999975 3688999999999999876422 576667
Q ss_pred ceeeee-eCCCCeEEEEEEEEEEEECC--------EEeeeeEEEEEEecC--CCCCCcceEEeeCCCCCCccccccCc--
Q 011042 229 CRYEVS-YGDGSYTKGTLALETLTIGR--------TVVKNVAIGCGHKNQ--GMFVGAAGLLGLGGGSMSLVGQLGGQ-- 295 (495)
Q Consensus 229 ~~~~~~-YgdGs~~~G~~~~Dtvt~g~--------~~~~~~~fG~~~~~~--g~f~~~~GIlGLg~~~~s~~~ql~~~-- 295 (495)
|.|... |++|+.+.|++++|+|+|+. .+++++.|||++++. +.+..++||||||++++|+++|+...
T Consensus 68 C~y~~~~y~~gs~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~~~~~dGIlGLg~~~lSl~sql~~~~~ 147 (362)
T cd05489 68 CTAHPYNPVTGECATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGLPPGAQGVAGLGRSPLSLPAQLASAFG 147 (362)
T ss_pred CeeEccccccCcEeeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCCccccccccccCCCccchHHHhhhhcC
Confidence 999765 88998889999999999953 368999999998864 33456899999999999999998753
Q ss_pred cCCeEEEEeecCCCCCcceEEecccC---C------CCCceEEecccCCCCCeEEEEEeeeeEecCeeeccccccccccc
Q 011042 296 TGGAFSYCLVSRGTGSSGSLVFGREA---L------PVGAAWVPLVRNPRAPSFYYVGLSGLGVGGMRIPISEDLFRLTQ 366 (495)
Q Consensus 296 ~~~~FS~cL~~~~~~~~G~L~fGg~~---~------~~~~~~tpl~~~~~~~~~y~v~l~gisvgg~~l~i~~~~~~~~~ 366 (495)
..++|||||++..+ ..|.|+||+.+ + .++++||||+.++..+.||+|+|++|+||++++.+++..+....
T Consensus 148 ~~~~FS~CL~~~~~-~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~~~~~ 226 (362)
T cd05489 148 VARKFALCLPSSPG-GPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLSANDR 226 (362)
T ss_pred CCcceEEEeCCCCC-CCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCCchhccccc
Confidence 34899999987543 37999999976 2 37899999987765567999999999999999998877776555
Q ss_pred cCCCcEEEccCCceeeecHHHHHHHHHHHHHhhCCCCCCCC-cccccccccccCc----ccccccEEEEEEeC-CCEEEe
Q 011042 367 MGDDGVVMDTGTAVTRLPTPAYEAFRDAFVAQTGNLPRASG-VSIFDTCYNLSGF----VSVRVPTVSFYFSG-GPVLTL 440 (495)
Q Consensus 367 ~g~~~~iiDSGTt~t~lp~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~C~~~~~~----~~~~~P~i~f~f~g-g~~~~l 440 (495)
.+.+++||||||++|+||+++|++|.++|.+++........ ...++.||+.... ....+|+|+|+|+| |++|+|
T Consensus 227 ~~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~it~~f~g~g~~~~l 306 (362)
T cd05489 227 LGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATARIPRVPAAAVFPELCYPASALGNTRLGYAVPAIDLVLDGGGVNWTI 306 (362)
T ss_pred cCCCcEEEecCCceEEECHHHHHHHHHHHHHHhcccCcCCCCCCCcCccccCCCcCCcccccccceEEEEEeCCCeEEEE
Confidence 66788999999999999999999999999988754333222 1223699986432 13679999999996 799999
Q ss_pred CCCCeEEEecCCCceEEEEEecC---CCceeecHhhhcceEEEEECCCCEEEEeeC
Q 011042 441 PASNFLIPVDDAGTFCFAFAPSP---SGLSIIGNIQQEGIQISFDGANGFVGFGPN 493 (495)
Q Consensus 441 ~~~~y~~~~~~~~~~Cl~~~~~~---~~~~IlG~~fl~~~yvvfD~~~~~IGFa~~ 493 (495)
++++|+++.. .+..|++|.+.+ .+.||||+.|||++|++||++++|||||+.
T Consensus 307 ~~~ny~~~~~-~~~~Cl~f~~~~~~~~~~~IlG~~~~~~~~vvyD~~~~riGfa~~ 361 (362)
T cd05489 307 FGANSMVQVK-GGVACLAFVDGGSEPRPAVVIGGHQMEDNLLVFDLEKSRLGFSSS 361 (362)
T ss_pred cCCceEEEcC-CCcEEEEEeeCCCCCCceEEEeeheecceEEEEECCCCEeecccC
Confidence 9999999876 467899998764 347999999999999999999999999974
No 5
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=2.3e-55 Score=446.08 Aligned_cols=293 Identities=25% Similarity=0.463 Sum_probs=246.4
Q ss_pred ceEEEEEeeCCCCceeeEEEecCCCceeEecCCCCCcccCCCCccCCCCCCccccccCCChhcccccCCCCCCCCceeee
Q 011042 154 GEYFVRIGVGSPPRSQYMVIDSGSDIVWVQCQPCSQCYKQSDPVFDPADSASFSGVSCSSAVCDRLENAGCHAGRCRYEV 233 (495)
Q Consensus 154 ~~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~~C~~~~~~~~~ 233 (495)
+.|+++|.||||+|++.|+|||||+++||+|.+|..|..+.++.|||++|+|++.++|.+..|.. ...|.++.|.|.+
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~--~~~~~~~~~~~~i 79 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCKNCGIHMEPPYNLNNSITSSILYCDCNKCCY--CLSCLNNKCEYSI 79 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCCCcCCCCCCCcCcccccccccccCCCccccc--cCcCCCCcCcEEE
Confidence 58999999999999999999999999999999999999888899999999999999999999953 3457778899999
Q ss_pred eeCCCCeEEEEEEEEEEEECCEEee-------eeEEEEEEecCCCC--CCcceEEeeCCCCCCccc--------ccc-Cc
Q 011042 234 SYGDGSYTKGTLALETLTIGRTVVK-------NVAIGCGHKNQGMF--VGAAGLLGLGGGSMSLVG--------QLG-GQ 295 (495)
Q Consensus 234 ~YgdGs~~~G~~~~Dtvt~g~~~~~-------~~~fG~~~~~~g~f--~~~~GIlGLg~~~~s~~~--------ql~-~~ 295 (495)
.|++|+.+.|.+++|+|+|++..++ ++.|||+....+.| ...+||||||+...+... |.. ..
T Consensus 80 ~Y~~gs~~~G~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~l~~~~~~~~ 159 (326)
T cd06096 80 SYSEGSSISGFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETNLFLTQQATGILGLSLTKNNGLPTPIILLFTKRPKLK 159 (326)
T ss_pred EECCCCceeeEEEEEEEEeccCCCCccccccccEEeccCccccCcccccccceEEEccCCcccccCchhHHHHHhccccc
Confidence 9999987899999999999876543 57899999887766 568999999998753221 111 12
Q ss_pred cCCeEEEEeecCCCCCcceEEecccC---CC----------CCceEEecccCCCCCeEEEEEeeeeEecCeeeccccccc
Q 011042 296 TGGAFSYCLVSRGTGSSGSLVFGREA---LP----------VGAAWVPLVRNPRAPSFYYVGLSGLGVGGMRIPISEDLF 362 (495)
Q Consensus 296 ~~~~FS~cL~~~~~~~~G~L~fGg~~---~~----------~~~~~tpl~~~~~~~~~y~v~l~gisvgg~~l~i~~~~~ 362 (495)
..++||+||.+. .|.|+||++| +. +++.|+|+. ...+|.|.+++|+|+++.....
T Consensus 160 ~~~~FS~~l~~~----~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~----~~~~y~v~l~~i~vg~~~~~~~---- 227 (326)
T cd06096 160 KDKIFSICLSED----GGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPIT----RKYYYYVKLEGLSVYGTTSNSG---- 227 (326)
T ss_pred CCceEEEEEcCC----CeEEEECccChhhhcccccccccccCCceEEecc----CCceEEEEEEEEEEccccccee----
Confidence 248999999863 6999999987 33 789999995 3479999999999998861110
Q ss_pred cccccCCCcEEEccCCceeeecHHHHHHHHHHHHHhhCCCCCCCCcccccccccccCcccccccEEEEEEeCCCEEEeCC
Q 011042 363 RLTQMGDDGVVMDTGTAVTRLPTPAYEAFRDAFVAQTGNLPRASGVSIFDTCYNLSGFVSVRVPTVSFYFSGGPVLTLPA 442 (495)
Q Consensus 363 ~~~~~g~~~~iiDSGTt~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~gg~~~~l~~ 442 (495)
......+||||||++++||+++|++|.+++ |+|+|+|++|++++|+|
T Consensus 228 ---~~~~~~aivDSGTs~~~lp~~~~~~l~~~~------------------------------P~i~~~f~~g~~~~i~p 274 (326)
T cd06096 228 ---NTKGLGMLVDSGSTLSHFPEDLYNKINNFF------------------------------PTITIIFENNLKIDWKP 274 (326)
T ss_pred ---cccCCCEEEeCCCCcccCCHHHHHHHHhhc------------------------------CcEEEEEcCCcEEEECH
Confidence 012567999999999999999999988765 89999998789999999
Q ss_pred CCeEEEecCCCceEEEEEecCCCceeecHhhhcceEEEEECCCCEEEEeeCCC
Q 011042 443 SNFLIPVDDAGTFCFAFAPSPSGLSIIGNIQQEGIQISFDGANGFVGFGPNVC 495 (495)
Q Consensus 443 ~~y~~~~~~~~~~Cl~~~~~~~~~~IlG~~fl~~~yvvfD~~~~~IGFa~~~C 495 (495)
++|+++... ...|+++... .+.+|||++|||++|+|||++++|||||+++|
T Consensus 275 ~~y~~~~~~-~~c~~~~~~~-~~~~ILG~~flr~~y~vFD~~~~riGfa~~~C 325 (326)
T cd06096 275 SSYLYKKES-FWCKGGEKSV-SNKPILGASFFKNKQIIFDLDNNRIGFVESNC 325 (326)
T ss_pred HHhccccCC-ceEEEEEecC-CCceEEChHHhcCcEEEEECcCCEEeeEcCCC
Confidence 999997652 3344566543 46799999999999999999999999999999
No 6
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=1e-54 Score=441.28 Aligned_cols=299 Identities=25% Similarity=0.457 Sum_probs=245.2
Q ss_pred CCcceEEEEEeeCCCCceeeEEEecCCCceeEecCCCCCc--ccCCCCccCCCCCCccccccCCChhcccccCCCCCCCC
Q 011042 151 QGSGEYFVRIGVGSPPRSQYMVIDSGSDIVWVQCQPCSQC--YKQSDPVFDPADSASFSGVSCSSAVCDRLENAGCHAGR 228 (495)
Q Consensus 151 ~~~~~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~C~~C--~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~~C~~~~ 228 (495)
+.+.+|+++|.||||+|++.|+|||||+++||+|..|..| .+..++.|||++|+||+.. +
T Consensus 2 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~~~~y~~~~SsT~~~~------------------~ 63 (325)
T cd05490 2 YMDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLDIACWLHHKYNSSKSSTYVKN------------------G 63 (325)
T ss_pred CcCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCCccccCcCcCCcccCcceeeC------------------C
Confidence 4578999999999999999999999999999999999632 2235679999999999873 5
Q ss_pred ceeeeeeCCCCeEEEEEEEEEEEECCEEeeeeEEEEEEecCCC-C--CCcceEEeeCCCCCCccc------cc---cCcc
Q 011042 229 CRYEVSYGDGSYTKGTLALETLTIGRTVVKNVAIGCGHKNQGM-F--VGAAGLLGLGGGSMSLVG------QL---GGQT 296 (495)
Q Consensus 229 ~~~~~~YgdGs~~~G~~~~Dtvt~g~~~~~~~~fG~~~~~~g~-f--~~~~GIlGLg~~~~s~~~------ql---~~~~ 296 (495)
|.|.+.|++|+. .|.+++|+|+|++..++++.|||+++..+. | ...+||||||++.++... +| +.+.
T Consensus 64 ~~~~i~Yg~G~~-~G~~~~D~v~~g~~~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~~g~i~ 142 (325)
T cd05490 64 TEFAIQYGSGSL-SGYLSQDTVSIGGLQVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVTPVFDNIMAQKLVE 142 (325)
T ss_pred cEEEEEECCcEE-EEEEeeeEEEECCEEEcCEEEEEEeeccCCcccceeeeEEEecCCccccccCCCCHHHHHHhcCCCC
Confidence 899999999985 899999999999999999999999987653 3 467999999998876543 32 3467
Q ss_pred CCeEEEEeecCCCC-CcceEEecccC---CCCCceEEecccCCCCCeEEEEEeeeeEecCeeeccccccccccccCCCcE
Q 011042 297 GGAFSYCLVSRGTG-SSGSLVFGREA---LPVGAAWVPLVRNPRAPSFYYVGLSGLGVGGMRIPISEDLFRLTQMGDDGV 372 (495)
Q Consensus 297 ~~~FS~cL~~~~~~-~~G~L~fGg~~---~~~~~~~tpl~~~~~~~~~y~v~l~gisvgg~~l~i~~~~~~~~~~g~~~~ 372 (495)
+++||+||.+..+. ..|.|+||++| +.+++.|+|+. ...+|.|++++|+||++..... ....+
T Consensus 143 ~~~FS~~L~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~~~~----~~~~w~v~l~~i~vg~~~~~~~---------~~~~a 209 (325)
T cd05490 143 QNVFSFYLNRDPDAQPGGELMLGGTDPKYYTGDLHYVNVT----RKAYWQIHMDQVDVGSGLTLCK---------GGCEA 209 (325)
T ss_pred CCEEEEEEeCCCCCCCCCEEEECccCHHHcCCceEEEEcC----cceEEEEEeeEEEECCeeeecC---------CCCEE
Confidence 89999999864322 37999999988 78999999994 4679999999999998743221 14579
Q ss_pred EEccCCceeeecHHHHHHHHHHHHHhhCCCCCCCCcccccccccccCcccccccEEEEEEeCCCEEEeCCCCeEEEecC-
Q 011042 373 VMDTGTAVTRLPTPAYEAFRDAFVAQTGNLPRASGVSIFDTCYNLSGFVSVRVPTVSFYFSGGPVLTLPASNFLIPVDD- 451 (495)
Q Consensus 373 iiDSGTt~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~gg~~~~l~~~~y~~~~~~- 451 (495)
||||||+++++|++++++|.+++++. +...+.+.+ +|++. ..+|+|+|+|+ |++++|+|++|+++...
T Consensus 210 iiDSGTt~~~~p~~~~~~l~~~~~~~----~~~~~~~~~-~C~~~-----~~~P~i~f~fg-g~~~~l~~~~y~~~~~~~ 278 (325)
T cd05490 210 IVDTGTSLITGPVEEVRALQKAIGAV----PLIQGEYMI-DCEKI-----PTLPVISFSLG-GKVYPLTGEDYILKVSQR 278 (325)
T ss_pred EECCCCccccCCHHHHHHHHHHhCCc----cccCCCEEe-ccccc-----ccCCCEEEEEC-CEEEEEChHHeEEeccCC
Confidence 99999999999999999999988643 222333323 78654 57899999996 89999999999997653
Q ss_pred CCceEE-EEEec-----CCCceeecHhhhcceEEEEECCCCEEEEee
Q 011042 452 AGTFCF-AFAPS-----PSGLSIIGNIQQEGIQISFDGANGFVGFGP 492 (495)
Q Consensus 452 ~~~~Cl-~~~~~-----~~~~~IlG~~fl~~~yvvfD~~~~~IGFa~ 492 (495)
....|+ +|+.. ..+.||||++|||++|+|||++++|||||+
T Consensus 279 ~~~~C~~~~~~~~~~~~~~~~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 279 GTTICLSGFMGLDIPPPAGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred CCCEEeeEEEECCCCCCCCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence 346897 67653 235799999999999999999999999996
No 7
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=7.2e-55 Score=440.89 Aligned_cols=295 Identities=25% Similarity=0.458 Sum_probs=249.8
Q ss_pred CCcceEEEEEeeCCCCceeeEEEecCCCceeEecCCCCCcccCCCCccCCCCCCccccccCCChhcccccCCCCCCCCce
Q 011042 151 QGSGEYFVRIGVGSPPRSQYMVIDSGSDIVWVQCQPCSQCYKQSDPVFDPADSASFSGVSCSSAVCDRLENAGCHAGRCR 230 (495)
Q Consensus 151 ~~~~~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~~C~~~~~~ 230 (495)
+.+..|+++|+||||+|++.|+|||||+++||+|..|..|.++.++.|||++|+|++.. .+.
T Consensus 6 ~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~~~~c~~~~~f~~~~Sst~~~~------------------~~~ 67 (317)
T cd05478 6 YLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCSSQACSNHNRFNPRQSSTYQST------------------GQP 67 (317)
T ss_pred ccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCCcccccccCcCCCCCCcceeeC------------------CcE
Confidence 56789999999999999999999999999999999998766677899999999999985 588
Q ss_pred eeeeeCCCCeEEEEEEEEEEEECCEEeeeeEEEEEEecCCCC---CCcceEEeeCCCCCC------cccccc---CccCC
Q 011042 231 YEVSYGDGSYTKGTLALETLTIGRTVVKNVAIGCGHKNQGMF---VGAAGLLGLGGGSMS------LVGQLG---GQTGG 298 (495)
Q Consensus 231 ~~~~YgdGs~~~G~~~~Dtvt~g~~~~~~~~fG~~~~~~g~f---~~~~GIlGLg~~~~s------~~~ql~---~~~~~ 298 (495)
|.+.|++|+. .|.+++|+|++++..++++.|||++...+.+ ...+||||||++.++ +..++. .+.++
T Consensus 68 ~~~~yg~gs~-~G~~~~D~v~ig~~~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~~g~i~~~ 146 (317)
T cd05478 68 LSIQYGTGSM-TGILGYDTVQVGGISDTNQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGATPVFDNMMSQGLVSQD 146 (317)
T ss_pred EEEEECCceE-EEEEeeeEEEECCEEECCEEEEEEEecCccccccccccceeeeccchhcccCCCCHHHHHHhCCCCCCC
Confidence 9999999985 8999999999999999999999998876654 357999999987654 444443 36679
Q ss_pred eEEEEeecCCCCCcceEEecccC---CCCCceEEecccCCCCCeEEEEEeeeeEecCeeeccccccccccccCCCcEEEc
Q 011042 299 AFSYCLVSRGTGSSGSLVFGREA---LPVGAAWVPLVRNPRAPSFYYVGLSGLGVGGMRIPISEDLFRLTQMGDDGVVMD 375 (495)
Q Consensus 299 ~FS~cL~~~~~~~~G~L~fGg~~---~~~~~~~tpl~~~~~~~~~y~v~l~gisvgg~~l~i~~~~~~~~~~g~~~~iiD 375 (495)
+||+||.+.... .|.|+||+.| +.+++.|+|+. .+.+|.|.+++|+||++.+... .+..+|||
T Consensus 147 ~FS~~L~~~~~~-~g~l~~Gg~d~~~~~g~l~~~p~~----~~~~w~v~l~~v~v~g~~~~~~---------~~~~~iiD 212 (317)
T cd05478 147 LFSVYLSSNGQQ-GSVVTFGGIDPSYYTGSLNWVPVT----AETYWQITVDSVTINGQVVACS---------GGCQAIVD 212 (317)
T ss_pred EEEEEeCCCCCC-CeEEEEcccCHHHccCceEEEECC----CCcEEEEEeeEEEECCEEEccC---------CCCEEEEC
Confidence 999999876433 7999999987 78999999994 4679999999999999987543 14579999
Q ss_pred cCCceeeecHHHHHHHHHHHHHhhCCCCCCCCcccccccccccCcccccccEEEEEEeCCCEEEeCCCCeEEEecCCCce
Q 011042 376 TGTAVTRLPTPAYEAFRDAFVAQTGNLPRASGVSIFDTCYNLSGFVSVRVPTVSFYFSGGPVLTLPASNFLIPVDDAGTF 455 (495)
Q Consensus 376 SGTt~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~gg~~~~l~~~~y~~~~~~~~~~ 455 (495)
|||+++++|+++|++|.++++... . ..+...+ +|+.. ..+|+|+|+|+ |++++||+++|+++. +..
T Consensus 213 TGts~~~lp~~~~~~l~~~~~~~~---~-~~~~~~~-~C~~~-----~~~P~~~f~f~-g~~~~i~~~~y~~~~---~~~ 278 (317)
T cd05478 213 TGTSLLVGPSSDIANIQSDIGASQ---N-QNGEMVV-NCSSI-----SSMPDVVFTIN-GVQYPLPPSAYILQD---QGS 278 (317)
T ss_pred CCchhhhCCHHHHHHHHHHhCCcc---c-cCCcEEe-CCcCc-----ccCCcEEEEEC-CEEEEECHHHheecC---CCE
Confidence 999999999999999999886542 1 1222222 67653 57899999996 899999999999864 568
Q ss_pred EE-EEEecC-CCceeecHhhhcceEEEEECCCCEEEEee
Q 011042 456 CF-AFAPSP-SGLSIIGNIQQEGIQISFDGANGFVGFGP 492 (495)
Q Consensus 456 Cl-~~~~~~-~~~~IlG~~fl~~~yvvfD~~~~~IGFa~ 492 (495)
|+ +|++.+ .+.||||++|||++|+|||++++|||||+
T Consensus 279 C~~~~~~~~~~~~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 279 CTSGFQSMGLGELWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred EeEEEEeCCCCCeEEechHHhcceEEEEeCCCCEEeecC
Confidence 97 677754 35799999999999999999999999996
No 8
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=2.4e-54 Score=455.12 Aligned_cols=307 Identities=21% Similarity=0.413 Sum_probs=252.2
Q ss_pred ceeeeecccCCCcceEEEEEeeCCCCceeeEEEecCCCceeEecCCCCCcccCCCCccCCCCCCccccccCCChhccccc
Q 011042 141 FGTDVVSGMDQGSGEYFVRIGVGSPPRSQYMVIDSGSDIVWVQCQPCSQCYKQSDPVFDPADSASFSGVSCSSAVCDRLE 220 (495)
Q Consensus 141 ~~~p~~~~~~~~~~~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~ 220 (495)
...|+.+ +.+.+|+++|+||||||+|.|+|||||+++||+|..|..|.++.++.|||++|+||+.+.+..
T Consensus 109 ~~~~l~n---~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~~C~~~~C~~~~~yd~s~SSTy~~~~~~~------- 178 (482)
T PTZ00165 109 LQQDLLN---FHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSKECKSGGCAPHRKFDPKKSSTYTKLKLGD------- 178 (482)
T ss_pred cceeccc---ccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEchhcCcccccccCCCCccccCCcEecCCCC-------
Confidence 4455554 789999999999999999999999999999999999987666678999999999999853211
Q ss_pred CCCCCCCCceeeeeeCCCCeEEEEEEEEEEEECCEEeeeeEEEEEEecCC-CC--CCcceEEeeCCCCCCcc--------
Q 011042 221 NAGCHAGRCRYEVSYGDGSYTKGTLALETLTIGRTVVKNVAIGCGHKNQG-MF--VGAAGLLGLGGGSMSLV-------- 289 (495)
Q Consensus 221 ~~~C~~~~~~~~~~YgdGs~~~G~~~~Dtvt~g~~~~~~~~fG~~~~~~g-~f--~~~~GIlGLg~~~~s~~-------- 289 (495)
....+.+.||+|+. .|.+++|+|++++..++++.|||++...+ .| ..+|||||||++.++..
T Consensus 179 ------~~~~~~i~YGsGs~-~G~l~~DtV~ig~l~i~~q~FG~a~~~s~~~f~~~~~DGILGLg~~~~s~~s~~~~~p~ 251 (482)
T PTZ00165 179 ------ESAETYIQYGTGEC-VLALGKDTVKIGGLKVKHQSIGLAIEESLHPFADLPFDGLVGLGFPDKDFKESKKALPI 251 (482)
T ss_pred ------ccceEEEEeCCCcE-EEEEEEEEEEECCEEEccEEEEEEEeccccccccccccceeecCCCcccccccCCCCCH
Confidence 11257799999987 79999999999999999999999998755 34 46899999999876432
Q ss_pred -ccc---cCccCCeEEEEeecCCCCCcceEEecccC---C--CCCceEEecccCCCCCeEEEEEeeeeEecCeeeccccc
Q 011042 290 -GQL---GGQTGGAFSYCLVSRGTGSSGSLVFGREA---L--PVGAAWVPLVRNPRAPSFYYVGLSGLGVGGMRIPISED 360 (495)
Q Consensus 290 -~ql---~~~~~~~FS~cL~~~~~~~~G~L~fGg~~---~--~~~~~~tpl~~~~~~~~~y~v~l~gisvgg~~l~i~~~ 360 (495)
.++ +.+..++||+||.+.... .|.|+|||.| + .+++.|+|+. ...||.|.+++|+||++.+....
T Consensus 252 ~~~l~~qgli~~~~FS~yL~~~~~~-~G~l~fGGiD~~~~~~~g~i~~~Pv~----~~~yW~i~l~~i~vgg~~~~~~~- 325 (482)
T PTZ00165 252 VDNIKKQNLLKRNIFSFYMSKDLNQ-PGSISFGSADPKYTLEGHKIWWFPVI----STDYWEIEVVDILIDGKSLGFCD- 325 (482)
T ss_pred HHHHHHcCCcccceEEEEeccCCCC-CCEEEeCCcCHHHcCCCCceEEEEcc----ccceEEEEeCeEEECCEEeeecC-
Confidence 222 236789999999764443 7999999987 3 5689999994 46799999999999998876532
Q ss_pred cccccccCCCcEEEccCCceeeecHHHHHHHHHHHHHhhCCCCCCCCcccccccccccCcccccccEEEEEEeC--C--C
Q 011042 361 LFRLTQMGDDGVVMDTGTAVTRLPTPAYEAFRDAFVAQTGNLPRASGVSIFDTCYNLSGFVSVRVPTVSFYFSG--G--P 436 (495)
Q Consensus 361 ~~~~~~~g~~~~iiDSGTt~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g--g--~ 436 (495)
+...+|+||||+++++|++++++|.++++.. .+|.+. ..+|+|+|+|+| | +
T Consensus 326 -------~~~~aIiDTGTSli~lP~~~~~~i~~~i~~~-------------~~C~~~-----~~lP~itf~f~g~~g~~v 380 (482)
T PTZ00165 326 -------RKCKAAIDTGSSLITGPSSVINPLLEKIPLE-------------EDCSNK-----DSLPRISFVLEDVNGRKI 380 (482)
T ss_pred -------CceEEEEcCCCccEeCCHHHHHHHHHHcCCc-------------cccccc-----ccCCceEEEECCCCCceE
Confidence 1456999999999999999999999887532 268754 678999999973 2 3
Q ss_pred EEEeCCCCeEEEe---cCCCceEE-EEEecC-----CCceeecHhhhcceEEEEECCCCEEEEeeCCC
Q 011042 437 VLTLPASNFLIPV---DDAGTFCF-AFAPSP-----SGLSIIGNIQQEGIQISFDGANGFVGFGPNVC 495 (495)
Q Consensus 437 ~~~l~~~~y~~~~---~~~~~~Cl-~~~~~~-----~~~~IlG~~fl~~~yvvfD~~~~~IGFa~~~C 495 (495)
+++|+|++|+++. ...+..|+ +|.+.+ ++.||||++|||++|+|||.+++|||||+++|
T Consensus 381 ~~~l~p~dYi~~~~~~~~~~~~C~~g~~~~d~~~~~g~~~ILGd~Flr~yy~VFD~~n~rIGfA~a~~ 448 (482)
T PTZ00165 381 KFDMDPEDYVIEEGDSEEQEHQCVIGIIPMDVPAPRGPLFVLGNNFIRKYYSIFDRDHMMVGLVPAKH 448 (482)
T ss_pred EEEEchHHeeeecccCCCCCCeEEEEEEECCCCCCCCceEEEchhhheeEEEEEeCCCCEEEEEeecc
Confidence 8999999999974 22456895 888642 34699999999999999999999999999987
No 9
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=1.4e-53 Score=431.65 Aligned_cols=296 Identities=24% Similarity=0.495 Sum_probs=246.7
Q ss_pred cceEEEEEeeCCCCceeeEEEecCCCceeEecCCCCCcccCCCCccCCCCCCccccccCCChhcccccCCCCCCCCceee
Q 011042 153 SGEYFVRIGVGSPPRSQYMVIDSGSDIVWVQCQPCSQCYKQSDPVFDPADSASFSGVSCSSAVCDRLENAGCHAGRCRYE 232 (495)
Q Consensus 153 ~~~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~~C~~~~~~~~ 232 (495)
|..|+++|.||||+|++.|+|||||+++||+|..|..+.+..++.|||++|+||+.. .|.|+
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~C~~~~~f~~~~SsT~~~~------------------~~~~~ 62 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLCQSQACTNHTKFNPSQSSTYSTN------------------GETFS 62 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccCCCCCccccccCCCCcccCCCceEC------------------CcEEE
Confidence 468999999999999999999999999999999997655556789999999999874 58999
Q ss_pred eeeCCCCeEEEEEEEEEEEECCEEeeeeEEEEEEecCCC-C--CCcceEEeeCCCCC------Ccccccc---CccCCeE
Q 011042 233 VSYGDGSYTKGTLALETLTIGRTVVKNVAIGCGHKNQGM-F--VGAAGLLGLGGGSM------SLVGQLG---GQTGGAF 300 (495)
Q Consensus 233 ~~YgdGs~~~G~~~~Dtvt~g~~~~~~~~fG~~~~~~g~-f--~~~~GIlGLg~~~~------s~~~ql~---~~~~~~F 300 (495)
+.|++|+. .|.+++|+|++++..++++.|||++...+. | ...+||||||++.. +++.||. .+..++|
T Consensus 63 ~~Yg~Gs~-~G~~~~D~i~~g~~~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~~g~i~~~~F 141 (318)
T cd05477 63 LQYGSGSL-TGIFGYDTVTVQGIIITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVMQGMMQQNLLQAPIF 141 (318)
T ss_pred EEECCcEE-EEEEEeeEEEECCEEEcCEEEEEEEecccccccccceeeEeecCcccccccCCCCHHHHHHhcCCcCCCEE
Confidence 99999985 899999999999999999999999987553 2 46799999998654 4445554 3678999
Q ss_pred EEEeecCCCCCcceEEecccC---CCCCceEEecccCCCCCeEEEEEeeeeEecCeeeccccccccccccCCCcEEEccC
Q 011042 301 SYCLVSRGTGSSGSLVFGREA---LPVGAAWVPLVRNPRAPSFYYVGLSGLGVGGMRIPISEDLFRLTQMGDDGVVMDTG 377 (495)
Q Consensus 301 S~cL~~~~~~~~G~L~fGg~~---~~~~~~~tpl~~~~~~~~~y~v~l~gisvgg~~l~i~~~~~~~~~~g~~~~iiDSG 377 (495)
|+||.+......|.|+||+.| +.+++.|+|+. ...+|.|.+++|+||++++.+.. .+..+|||||
T Consensus 142 S~~L~~~~~~~~g~l~fGg~d~~~~~g~l~~~pv~----~~~~w~v~l~~i~v~g~~~~~~~--------~~~~~iiDSG 209 (318)
T cd05477 142 SFYLSGQQGQQGGELVFGGVDNNLYTGQIYWTPVT----SETYWQIGIQGFQINGQATGWCS--------QGCQAIVDTG 209 (318)
T ss_pred EEEEcCCCCCCCCEEEEcccCHHHcCCceEEEecC----CceEEEEEeeEEEECCEEecccC--------CCceeeECCC
Confidence 999987533346999999987 78899999994 46799999999999999875432 1456999999
Q ss_pred CceeeecHHHHHHHHHHHHHhhCCCCCCCCcccccccccccCcccccccEEEEEEeCCCEEEeCCCCeEEEecCCCceEE
Q 011042 378 TAVTRLPTPAYEAFRDAFVAQTGNLPRASGVSIFDTCYNLSGFVSVRVPTVSFYFSGGPVLTLPASNFLIPVDDAGTFCF 457 (495)
Q Consensus 378 Tt~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~gg~~~~l~~~~y~~~~~~~~~~Cl 457 (495)
|+++++|+++|++|+++++.... ..+.+.+ +|+.. ..+|+|+|+|+ |+++.||+++|+++. +..|+
T Consensus 210 tt~~~lP~~~~~~l~~~~~~~~~----~~~~~~~-~C~~~-----~~~p~l~~~f~-g~~~~v~~~~y~~~~---~~~C~ 275 (318)
T cd05477 210 TSLLTAPQQVMSTLMQSIGAQQD----QYGQYVV-NCNNI-----QNLPTLTFTIN-GVSFPLPPSAYILQN---NGYCT 275 (318)
T ss_pred CccEECCHHHHHHHHHHhCCccc----cCCCEEE-eCCcc-----ccCCcEEEEEC-CEEEEECHHHeEecC---CCeEE
Confidence 99999999999999999876532 1222222 67543 67899999997 899999999999864 46895
Q ss_pred -EEEec------CCCceeecHhhhcceEEEEECCCCEEEEeeC
Q 011042 458 -AFAPS------PSGLSIIGNIQQEGIQISFDGANGFVGFGPN 493 (495)
Q Consensus 458 -~~~~~------~~~~~IlG~~fl~~~yvvfD~~~~~IGFa~~ 493 (495)
+|.+. +...||||+.|||++|++||++++|||||++
T Consensus 276 ~~i~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~ig~a~~ 318 (318)
T cd05477 276 VGIEPTYLPSQNGQPLWILGDVFLRQYYSVYDLGNNQVGFATA 318 (318)
T ss_pred EEEEecccCCCCCCceEEEcHHHhhheEEEEeCCCCEEeeeeC
Confidence 88753 2246999999999999999999999999985
No 10
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=1.6e-53 Score=430.79 Aligned_cols=293 Identities=25% Similarity=0.470 Sum_probs=241.2
Q ss_pred EEEEEeeCCCCceeeEEEecCCCceeEecCCCCCcccCCCCccCCCCCCccccccCCChhcccccCCCCCCCCceeeeee
Q 011042 156 YFVRIGVGSPPRSQYMVIDSGSDIVWVQCQPCSQCYKQSDPVFDPADSASFSGVSCSSAVCDRLENAGCHAGRCRYEVSY 235 (495)
Q Consensus 156 Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~~C~~~~~~~~~~Y 235 (495)
|+++|+||||+|++.|+|||||+++||+|..|..+.+..++.|||++|+||+.. .|.|.+.|
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~~~~C~~~~~y~~~~SsT~~~~------------------~~~~~i~Y 62 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYCTSQACTKHNRFQPSESSTYVSN------------------GEAFSIQY 62 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCCCCcccCccceECCCCCcccccC------------------CcEEEEEe
Confidence 889999999999999999999999999999997433346789999999999885 58999999
Q ss_pred CCCCeEEEEEEEEEEEECCEEeeeeEEEEEEecCCC-C--CCcceEEeeCCCCCCc------cccc---cCccCCeEEEE
Q 011042 236 GDGSYTKGTLALETLTIGRTVVKNVAIGCGHKNQGM-F--VGAAGLLGLGGGSMSL------VGQL---GGQTGGAFSYC 303 (495)
Q Consensus 236 gdGs~~~G~~~~Dtvt~g~~~~~~~~fG~~~~~~g~-f--~~~~GIlGLg~~~~s~------~~ql---~~~~~~~FS~c 303 (495)
++|+. .|.+++|+|++++..++++.|||+....+. | ...+||||||++.++. ..++ ..+..++||+|
T Consensus 63 g~g~~-~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~ 141 (316)
T cd05486 63 GTGSL-TGIIGIDQVTVEGITVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQNLVELPMFSVY 141 (316)
T ss_pred CCcEE-EEEeeecEEEECCEEEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHHHHhcCCCCCCEEEEE
Confidence 99985 899999999999999999999999877553 3 4689999999987664 2222 23567899999
Q ss_pred eecCCC-CCcceEEecccC---CCCCceEEecccCCCCCeEEEEEeeeeEecCeeeccccccccccccCCCcEEEccCCc
Q 011042 304 LVSRGT-GSSGSLVFGREA---LPVGAAWVPLVRNPRAPSFYYVGLSGLGVGGMRIPISEDLFRLTQMGDDGVVMDTGTA 379 (495)
Q Consensus 304 L~~~~~-~~~G~L~fGg~~---~~~~~~~tpl~~~~~~~~~y~v~l~gisvgg~~l~i~~~~~~~~~~g~~~~iiDSGTt 379 (495)
|.+... ...|.|+||++| +.+++.|+|+. ...+|.|.+++|+||++.+..+. ...+||||||+
T Consensus 142 L~~~~~~~~~g~l~fGg~d~~~~~g~l~~~pi~----~~~~w~v~l~~i~v~g~~~~~~~---------~~~aiiDTGTs 208 (316)
T cd05486 142 MSRNPNSADGGELVFGGFDTSRFSGQLNWVPVT----VQGYWQIQLDNIQVGGTVIFCSD---------GCQAIVDTGTS 208 (316)
T ss_pred EccCCCCCCCcEEEEcccCHHHcccceEEEECC----CceEEEEEeeEEEEecceEecCC---------CCEEEECCCcc
Confidence 986432 247999999987 77999999994 46799999999999998765331 45699999999
Q ss_pred eeeecHHHHHHHHHHHHHhhCCCCCCCCcccccccccccCcccccccEEEEEEeCCCEEEeCCCCeEEEecC-CCceEE-
Q 011042 380 VTRLPTPAYEAFRDAFVAQTGNLPRASGVSIFDTCYNLSGFVSVRVPTVSFYFSGGPVLTLPASNFLIPVDD-AGTFCF- 457 (495)
Q Consensus 380 ~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~gg~~~~l~~~~y~~~~~~-~~~~Cl- 457 (495)
++++|++++++|.+++.+. ...+.+.+ +|... ..+|+|+|+|+ |++++|+|++|++.... .+..|+
T Consensus 209 ~~~lP~~~~~~l~~~~~~~-----~~~~~~~~-~C~~~-----~~~p~i~f~f~-g~~~~l~~~~y~~~~~~~~~~~C~~ 276 (316)
T cd05486 209 LITGPSGDIKQLQNYIGAT-----ATDGEYGV-DCSTL-----SLMPSVTFTIN-GIPYSLSPQAYTLEDQSDGGGYCSS 276 (316)
T ss_pred hhhcCHHHHHHHHHHhCCc-----ccCCcEEE-ecccc-----ccCCCEEEEEC-CEEEEeCHHHeEEecccCCCCEEee
Confidence 9999999999998877543 12222222 67543 57999999997 89999999999987522 356896
Q ss_pred EEEec-----CCCceeecHhhhcceEEEEECCCCEEEEee
Q 011042 458 AFAPS-----PSGLSIIGNIQQEGIQISFDGANGFVGFGP 492 (495)
Q Consensus 458 ~~~~~-----~~~~~IlG~~fl~~~yvvfD~~~~~IGFa~ 492 (495)
+|+.. .++.||||++|||++|+|||.+++|||||+
T Consensus 277 ~~~~~~~~~~~~~~~ILGd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 277 GFQGLDIPPPAGPLWILGDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred EEEECCCCCCCCCeEEEchHHhcceEEEEeCCCCEeeccC
Confidence 77653 234699999999999999999999999996
No 11
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=5.1e-53 Score=427.92 Aligned_cols=294 Identities=25% Similarity=0.467 Sum_probs=244.6
Q ss_pred CCcceEEEEEeeCCCCceeeEEEecCCCceeEecCCCCCcccCCCCccCCCCCCccccccCCChhcccccCCCCCCCCce
Q 011042 151 QGSGEYFVRIGVGSPPRSQYMVIDSGSDIVWVQCQPCSQCYKQSDPVFDPADSASFSGVSCSSAVCDRLENAGCHAGRCR 230 (495)
Q Consensus 151 ~~~~~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~~C~~~~~~ 230 (495)
+.+..|+++|.||||+|++.|+|||||+++||+|..|..+.+..++.|+|++|+|++.. .|.
T Consensus 6 ~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C~~~~C~~~~~y~~~~Sst~~~~------------------~~~ 67 (320)
T cd05488 6 YLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKCGSIACFLHSKYDSSASSTYKAN------------------GTE 67 (320)
T ss_pred cCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCCCCcccCCcceECCCCCcceeeC------------------CCE
Confidence 45688999999999999999999999999999999997543345679999999999874 589
Q ss_pred eeeeeCCCCeEEEEEEEEEEEECCEEeeeeEEEEEEecCCC-C--CCcceEEeeCCCCCCcccc---------ccCccCC
Q 011042 231 YEVSYGDGSYTKGTLALETLTIGRTVVKNVAIGCGHKNQGM-F--VGAAGLLGLGGGSMSLVGQ---------LGGQTGG 298 (495)
Q Consensus 231 ~~~~YgdGs~~~G~~~~Dtvt~g~~~~~~~~fG~~~~~~g~-f--~~~~GIlGLg~~~~s~~~q---------l~~~~~~ 298 (495)
|.+.|++|+. .|.+++|+|++++..++++.|||++...+. | ...+||||||++..+...+ .+.+.++
T Consensus 68 ~~~~y~~g~~-~G~~~~D~v~ig~~~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~ 146 (320)
T cd05488 68 FKIQYGSGSL-EGFVSQDTLSIGDLTIKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKIVPPFYNMINQGLLDEP 146 (320)
T ss_pred EEEEECCceE-EEEEEEeEEEECCEEECCEEEEEEecCCCcceeeeeeceEEecCCccccccCCCCHHHHHHhcCCCCCC
Confidence 9999999985 899999999999999999999999887664 2 5679999999998775543 2336678
Q ss_pred eEEEEeecCCCCCcceEEecccC---CCCCceEEecccCCCCCeEEEEEeeeeEecCeeeccccccccccccCCCcEEEc
Q 011042 299 AFSYCLVSRGTGSSGSLVFGREA---LPVGAAWVPLVRNPRAPSFYYVGLSGLGVGGMRIPISEDLFRLTQMGDDGVVMD 375 (495)
Q Consensus 299 ~FS~cL~~~~~~~~G~L~fGg~~---~~~~~~~tpl~~~~~~~~~y~v~l~gisvgg~~l~i~~~~~~~~~~g~~~~iiD 375 (495)
+||+||.+.... .|.|+||++| +.++++|+|++ ...+|.|.+++|+||++.+... +..+|||
T Consensus 147 ~FS~~L~~~~~~-~G~l~fGg~d~~~~~g~l~~~p~~----~~~~w~v~l~~i~vg~~~~~~~----------~~~~ivD 211 (320)
T cd05488 147 VFSFYLGSSEED-GGEATFGGIDESRFTGKITWLPVR----RKAYWEVELEKIGLGDEELELE----------NTGAAID 211 (320)
T ss_pred EEEEEecCCCCC-CcEEEECCcCHHHcCCceEEEeCC----cCcEEEEEeCeEEECCEEeccC----------CCeEEEc
Confidence 999999975433 7999999987 67899999995 3579999999999999877543 4569999
Q ss_pred cCCceeeecHHHHHHHHHHHHHhhCCCCCCCCcccccccccccCcccccccEEEEEEeCCCEEEeCCCCeEEEecCCCce
Q 011042 376 TGTAVTRLPTPAYEAFRDAFVAQTGNLPRASGVSIFDTCYNLSGFVSVRVPTVSFYFSGGPVLTLPASNFLIPVDDAGTF 455 (495)
Q Consensus 376 SGTt~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~gg~~~~l~~~~y~~~~~~~~~~ 455 (495)
|||++++||++++++|.+++++.. ...+.+.+ +|.+ ...+|+|+|+|+ |++++||+++|+++. +..
T Consensus 212 SGtt~~~lp~~~~~~l~~~~~~~~----~~~~~~~~-~C~~-----~~~~P~i~f~f~-g~~~~i~~~~y~~~~---~g~ 277 (320)
T cd05488 212 TGTSLIALPSDLAEMLNAEIGAKK----SWNGQYTV-DCSK-----VDSLPDLTFNFD-GYNFTLGPFDYTLEV---SGS 277 (320)
T ss_pred CCcccccCCHHHHHHHHHHhCCcc----ccCCcEEe-eccc-----cccCCCEEEEEC-CEEEEECHHHheecC---CCe
Confidence 999999999999999998885432 11222222 5654 367999999997 899999999999864 357
Q ss_pred EE-EEEecC-----CCceeecHhhhcceEEEEECCCCEEEEee
Q 011042 456 CF-AFAPSP-----SGLSIIGNIQQEGIQISFDGANGFVGFGP 492 (495)
Q Consensus 456 Cl-~~~~~~-----~~~~IlG~~fl~~~yvvfD~~~~~IGFa~ 492 (495)
|+ .|...+ +..||||++|||++|+|||++++|||||+
T Consensus 278 C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 278 CISAFTGMDFPEPVGPLAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred EEEEEEECcCCCCCCCeEEEchHHhhheEEEEeCCCCEEeecC
Confidence 97 565431 24699999999999999999999999986
No 12
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=2.1e-52 Score=424.91 Aligned_cols=296 Identities=24% Similarity=0.470 Sum_probs=244.6
Q ss_pred CCcceEEEEEeeCCCCceeeEEEecCCCceeEecCCCC----CcccCCCCccCCCCCCccccccCCChhcccccCCCCCC
Q 011042 151 QGSGEYFVRIGVGSPPRSQYMVIDSGSDIVWVQCQPCS----QCYKQSDPVFDPADSASFSGVSCSSAVCDRLENAGCHA 226 (495)
Q Consensus 151 ~~~~~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~C~----~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~~C~~ 226 (495)
+.+.+|+++|+||||+|++.|++||||+++||+|..|. .|. .++.|||++|+|++..
T Consensus 7 ~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~--~~~~y~~~~Sst~~~~----------------- 67 (329)
T cd05485 7 YMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTNIACL--LHNKYDSTKSSTYKKN----------------- 67 (329)
T ss_pred ccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCCcccc--CCCeECCcCCCCeEEC-----------------
Confidence 67899999999999999999999999999999999996 453 4678999999999885
Q ss_pred CCceeeeeeCCCCeEEEEEEEEEEEECCEEeeeeEEEEEEecCCC-C--CCcceEEeeCCCCCCcc------ccc---cC
Q 011042 227 GRCRYEVSYGDGSYTKGTLALETLTIGRTVVKNVAIGCGHKNQGM-F--VGAAGLLGLGGGSMSLV------GQL---GG 294 (495)
Q Consensus 227 ~~~~~~~~YgdGs~~~G~~~~Dtvt~g~~~~~~~~fG~~~~~~g~-f--~~~~GIlGLg~~~~s~~------~ql---~~ 294 (495)
.|.|.+.|++|+ +.|.+++|+|++++..++++.|||+.+..+. | ...+||||||++.++.. .|+ +.
T Consensus 68 -~~~~~i~Y~~g~-~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~~~~l~~qg~ 145 (329)
T cd05485 68 -GTEFAIQYGSGS-LSGFLSTDTVSVGGVSVKGQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDGVVPVFYNMVNQKL 145 (329)
T ss_pred -CeEEEEEECCce-EEEEEecCcEEECCEEECCEEEEEEEecCCccccccccceEEEcCCccccccCCCCHHHHHHhCCC
Confidence 589999999998 4899999999999999999999999877653 3 46799999999887642 233 33
Q ss_pred ccCCeEEEEeecCCCC-CcceEEecccC---CCCCceEEecccCCCCCeEEEEEeeeeEecCeeeccccccccccccCCC
Q 011042 295 QTGGAFSYCLVSRGTG-SSGSLVFGREA---LPVGAAWVPLVRNPRAPSFYYVGLSGLGVGGMRIPISEDLFRLTQMGDD 370 (495)
Q Consensus 295 ~~~~~FS~cL~~~~~~-~~G~L~fGg~~---~~~~~~~tpl~~~~~~~~~y~v~l~gisvgg~~l~i~~~~~~~~~~g~~ 370 (495)
+.++.||+||.+..+. ..|.|+||+.| +.+++.|+|+. ...+|.|.+++|+||++.+.. .+.
T Consensus 146 i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~----~~~~~~v~~~~i~v~~~~~~~----------~~~ 211 (329)
T cd05485 146 VDAPVFSFYLNRDPSAKEGGELILGGSDPKHYTGNFTYLPVT----RKGYWQFKMDSVSVGEGEFCS----------GGC 211 (329)
T ss_pred CCCCEEEEEecCCCCCCCCcEEEEcccCHHHcccceEEEEcC----CceEEEEEeeEEEECCeeecC----------CCc
Confidence 5678999999864332 47999999987 67899999994 467999999999999987531 145
Q ss_pred cEEEccCCceeeecHHHHHHHHHHHHHhhCCCCCCCCcccccccccccCcccccccEEEEEEeCCCEEEeCCCCeEEEec
Q 011042 371 GVVMDTGTAVTRLPTPAYEAFRDAFVAQTGNLPRASGVSIFDTCYNLSGFVSVRVPTVSFYFSGGPVLTLPASNFLIPVD 450 (495)
Q Consensus 371 ~~iiDSGTt~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~gg~~~~l~~~~y~~~~~ 450 (495)
.+||||||+++++|++++++|.+++.... ...+.+. .+|+. ..++|+|+|+|+ |++++|++++|+++..
T Consensus 212 ~~iiDSGtt~~~lP~~~~~~l~~~~~~~~----~~~~~~~-~~C~~-----~~~~p~i~f~fg-g~~~~i~~~~yi~~~~ 280 (329)
T cd05485 212 QAIADTGTSLIAGPVDEIEKLNNAIGAKP----IIGGEYM-VNCSA-----IPSLPDITFVLG-GKSFSLTGKDYVLKVT 280 (329)
T ss_pred EEEEccCCcceeCCHHHHHHHHHHhCCcc----ccCCcEE-Eeccc-----cccCCcEEEEEC-CEEeEEChHHeEEEec
Confidence 69999999999999999999999886531 1122221 26654 367899999997 8999999999999865
Q ss_pred C-CCceEE-EEEec-----CCCceeecHhhhcceEEEEECCCCEEEEee
Q 011042 451 D-AGTFCF-AFAPS-----PSGLSIIGNIQQEGIQISFDGANGFVGFGP 492 (495)
Q Consensus 451 ~-~~~~Cl-~~~~~-----~~~~~IlG~~fl~~~yvvfD~~~~~IGFa~ 492 (495)
+ ...+|+ +|+.. .++.||||++|||++|+|||++++|||||.
T Consensus 281 ~~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 281 QMGQTICLSGFMGIDIPPPAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred CCCCCEEeeeEEECcCCCCCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 4 346897 67753 234699999999999999999999999984
No 13
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=2.7e-52 Score=422.01 Aligned_cols=286 Identities=27% Similarity=0.501 Sum_probs=238.3
Q ss_pred CCcceEEEEEeeCCCCceeeEEEecCCCceeEecCCCC---CcccCCCCccCCCCCCccccccCCChhcccccCCCCCCC
Q 011042 151 QGSGEYFVRIGVGSPPRSQYMVIDSGSDIVWVQCQPCS---QCYKQSDPVFDPADSASFSGVSCSSAVCDRLENAGCHAG 227 (495)
Q Consensus 151 ~~~~~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~C~---~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~~C~~~ 227 (495)
+.+.+|+++|.||||+|++.|+|||||+++||+|..|. .|. .++.|||++|+||+..
T Consensus 6 ~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C~--~~~~y~~~~SsT~~~~------------------ 65 (317)
T cd06098 6 YLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIACY--FHSKYKSSKSSTYKKN------------------ 65 (317)
T ss_pred cCCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCCCcccc--ccCcCCcccCCCcccC------------------
Confidence 67889999999999999999999999999999999995 675 5679999999999885
Q ss_pred CceeeeeeCCCCeEEEEEEEEEEEECCEEeeeeEEEEEEecCCC-C--CCcceEEeeCCCCCCccc------cc---cCc
Q 011042 228 RCRYEVSYGDGSYTKGTLALETLTIGRTVVKNVAIGCGHKNQGM-F--VGAAGLLGLGGGSMSLVG------QL---GGQ 295 (495)
Q Consensus 228 ~~~~~~~YgdGs~~~G~~~~Dtvt~g~~~~~~~~fG~~~~~~g~-f--~~~~GIlGLg~~~~s~~~------ql---~~~ 295 (495)
...+.+.|++|+. .|.+++|+|++++..++++.|||++...+. | ...+||||||++.++... ++ +.+
T Consensus 66 ~~~~~i~Yg~G~~-~G~~~~D~v~ig~~~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i 144 (317)
T cd06098 66 GTSASIQYGTGSI-SGFFSQDSVTVGDLVVKNQVFIEATKEPGLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVEQGLV 144 (317)
T ss_pred CCEEEEEcCCceE-EEEEEeeEEEECCEEECCEEEEEEEecCCccccccccceeccccccchhhcCCCCHHHHHHhcCCC
Confidence 4789999999985 899999999999999999999999976542 3 568999999998766432 22 236
Q ss_pred cCCeEEEEeecCCC-CCcceEEecccC---CCCCceEEecccCCCCCeEEEEEeeeeEecCeeeccccccccccccCCCc
Q 011042 296 TGGAFSYCLVSRGT-GSSGSLVFGREA---LPVGAAWVPLVRNPRAPSFYYVGLSGLGVGGMRIPISEDLFRLTQMGDDG 371 (495)
Q Consensus 296 ~~~~FS~cL~~~~~-~~~G~L~fGg~~---~~~~~~~tpl~~~~~~~~~y~v~l~gisvgg~~l~i~~~~~~~~~~g~~~ 371 (495)
..++||+||.+... ...|.|+||++| +.|++.|+|+. ...||.|.+++|+||++.+..... ...
T Consensus 145 ~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~l~~~pv~----~~~~w~v~l~~i~v~g~~~~~~~~--------~~~ 212 (317)
T cd06098 145 KEPVFSFWLNRNPDEEEGGELVFGGVDPKHFKGEHTYVPVT----RKGYWQFEMGDVLIGGKSTGFCAG--------GCA 212 (317)
T ss_pred CCCEEEEEEecCCCCCCCcEEEECccChhhcccceEEEecC----cCcEEEEEeCeEEECCEEeeecCC--------CcE
Confidence 67899999986432 247999999987 77999999994 457999999999999998754321 456
Q ss_pred EEEccCCceeeecHHHHHHHHHHHHHhhCCCCCCCCcccccccccccCcccccccEEEEEEeCCCEEEeCCCCeEEEecC
Q 011042 372 VVMDTGTAVTRLPTPAYEAFRDAFVAQTGNLPRASGVSIFDTCYNLSGFVSVRVPTVSFYFSGGPVLTLPASNFLIPVDD 451 (495)
Q Consensus 372 ~iiDSGTt~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~gg~~~~l~~~~y~~~~~~ 451 (495)
+||||||+++++|++++++|. ..+ +|+.. ..+|+|+|+|+ |+.++|+|++|+++..+
T Consensus 213 aivDTGTs~~~lP~~~~~~i~----------------~~~-~C~~~-----~~~P~i~f~f~-g~~~~l~~~~yi~~~~~ 269 (317)
T cd06098 213 AIADSGTSLLAGPTTIVTQIN----------------SAV-DCNSL-----SSMPNVSFTIG-GKTFELTPEQYILKVGE 269 (317)
T ss_pred EEEecCCcceeCCHHHHHhhh----------------ccC-Ccccc-----ccCCcEEEEEC-CEEEEEChHHeEEeecC
Confidence 999999999999998876653 112 78764 56899999996 89999999999997653
Q ss_pred -CCceEE-EEEec-----CCCceeecHhhhcceEEEEECCCCEEEEee
Q 011042 452 -AGTFCF-AFAPS-----PSGLSIIGNIQQEGIQISFDGANGFVGFGP 492 (495)
Q Consensus 452 -~~~~Cl-~~~~~-----~~~~~IlG~~fl~~~yvvfD~~~~~IGFa~ 492 (495)
....|+ +|+.. .++.||||++|||++|+|||++++|||||+
T Consensus 270 ~~~~~C~~~~~~~~~~~~~~~~~IlGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 270 GAAAQCISGFTALDVPPPRGPLWILGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred CCCCEEeceEEECCCCCCCCCeEEechHHhcccEEEEeCCCCEEeecC
Confidence 245896 67643 234699999999999999999999999995
No 14
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=3.8e-52 Score=422.58 Aligned_cols=298 Identities=23% Similarity=0.431 Sum_probs=244.3
Q ss_pred CCcceEEEEEeeCCCCceeeEEEecCCCceeEecCCCCCc--ccCCCCccCCCCCCccccccCCChhcccccCCCCCCCC
Q 011042 151 QGSGEYFVRIGVGSPPRSQYMVIDSGSDIVWVQCQPCSQC--YKQSDPVFDPADSASFSGVSCSSAVCDRLENAGCHAGR 228 (495)
Q Consensus 151 ~~~~~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~C~~C--~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~~C~~~~ 228 (495)
+.+..|+++|+||||+|+++|+|||||+++||+|..|..| .+..++.|||++|+||+.. +
T Consensus 4 ~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~SsT~~~~------------------~ 65 (326)
T cd05487 4 YLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYTACVTHNLYDASDSSTYKEN------------------G 65 (326)
T ss_pred cCCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcchhhcccCcCCCCCCeeeeEC------------------C
Confidence 5678999999999999999999999999999999988653 2346789999999999975 6
Q ss_pred ceeeeeeCCCCeEEEEEEEEEEEECCEEeeeeEEEEEEecCC-CC--CCcceEEeeCCCCCCc------c---ccccCcc
Q 011042 229 CRYEVSYGDGSYTKGTLALETLTIGRTVVKNVAIGCGHKNQG-MF--VGAAGLLGLGGGSMSL------V---GQLGGQT 296 (495)
Q Consensus 229 ~~~~~~YgdGs~~~G~~~~Dtvt~g~~~~~~~~fG~~~~~~g-~f--~~~~GIlGLg~~~~s~------~---~ql~~~~ 296 (495)
|.|++.|++|+ +.|.+++|+|++++..+. +.||++....+ .| ...+||||||++..+. . .+.+.+.
T Consensus 66 ~~~~~~Yg~g~-~~G~~~~D~v~~g~~~~~-~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~ 143 (326)
T cd05487 66 TEFTIHYASGT-VKGFLSQDIVTVGGIPVT-QMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVTPVFDNIMSQGVLK 143 (326)
T ss_pred EEEEEEeCCce-EEEEEeeeEEEECCEEee-EEEEEEEeccCCccceeecceEEecCChhhcccCCCCHHHHHHhcCCCC
Confidence 99999999998 599999999999998874 78999987643 22 5689999999987652 1 1224477
Q ss_pred CCeEEEEeecCCC-CCcceEEecccC---CCCCceEEecccCCCCCeEEEEEeeeeEecCeeeccccccccccccCCCcE
Q 011042 297 GGAFSYCLVSRGT-GSSGSLVFGREA---LPVGAAWVPLVRNPRAPSFYYVGLSGLGVGGMRIPISEDLFRLTQMGDDGV 372 (495)
Q Consensus 297 ~~~FS~cL~~~~~-~~~G~L~fGg~~---~~~~~~~tpl~~~~~~~~~y~v~l~gisvgg~~l~i~~~~~~~~~~g~~~~ 372 (495)
+++||+||.+... ...|.|+||+.| +.+++.|+|+. ...+|.|.+++|+||++.+.... +..+
T Consensus 144 ~~~FS~~L~~~~~~~~~G~l~fGg~d~~~y~g~l~~~~~~----~~~~w~v~l~~i~vg~~~~~~~~---------~~~a 210 (326)
T cd05487 144 EDVFSVYYSRDSSHSLGGEIVLGGSDPQHYQGDFHYINTS----KTGFWQIQMKGVSVGSSTLLCED---------GCTA 210 (326)
T ss_pred CCEEEEEEeCCCCCCCCcEEEECCcChhhccCceEEEECC----cCceEEEEecEEEECCEEEecCC---------CCEE
Confidence 8999999987532 247999999987 78999999983 46799999999999998875431 4569
Q ss_pred EEccCCceeeecHHHHHHHHHHHHHhhCCCCCCCCcccccccccccCcccccccEEEEEEeCCCEEEeCCCCeEEEecC-
Q 011042 373 VMDTGTAVTRLPTPAYEAFRDAFVAQTGNLPRASGVSIFDTCYNLSGFVSVRVPTVSFYFSGGPVLTLPASNFLIPVDD- 451 (495)
Q Consensus 373 iiDSGTt~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~gg~~~~l~~~~y~~~~~~- 451 (495)
||||||+++++|++++++|++++++.. . .+.+. .+|... ..+|+|+|+|+ |++++|++++|+++..+
T Consensus 211 iiDSGts~~~lP~~~~~~l~~~~~~~~----~-~~~y~-~~C~~~-----~~~P~i~f~fg-g~~~~v~~~~yi~~~~~~ 278 (326)
T cd05487 211 VVDTGASFISGPTSSISKLMEALGAKE----R-LGDYV-VKCNEV-----PTLPDISFHLG-GKEYTLSSSDYVLQDSDF 278 (326)
T ss_pred EECCCccchhCcHHHHHHHHHHhCCcc----c-CCCEE-Eecccc-----CCCCCEEEEEC-CEEEEeCHHHhEEeccCC
Confidence 999999999999999999999986542 1 22222 267653 67899999996 89999999999997643
Q ss_pred CCceEE-EEEec-----CCCceeecHhhhcceEEEEECCCCEEEEeeC
Q 011042 452 AGTFCF-AFAPS-----PSGLSIIGNIQQEGIQISFDGANGFVGFGPN 493 (495)
Q Consensus 452 ~~~~Cl-~~~~~-----~~~~~IlG~~fl~~~yvvfD~~~~~IGFa~~ 493 (495)
.+..|+ +|+.. .++.||||++|||++|+|||++++|||||++
T Consensus 279 ~~~~C~~~~~~~~~~~~~~~~~ilG~~flr~~y~vfD~~~~~IGfA~a 326 (326)
T cd05487 279 SDKLCTVAFHAMDIPPPTGPLWVLGATFIRKFYTEFDRQNNRIGFALA 326 (326)
T ss_pred CCCEEEEEEEeCCCCCCCCCeEEEehHHhhccEEEEeCCCCEEeeeeC
Confidence 356895 78753 2247999999999999999999999999985
No 15
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=1.8e-51 Score=430.15 Aligned_cols=303 Identities=21% Similarity=0.357 Sum_probs=246.7
Q ss_pred cceeeeecccCCCcceEEEEEeeCCCCceeeEEEecCCCceeEecCCCCCcccCCCCccCCCCCCccccccCCChhcccc
Q 011042 140 DFGTDVVSGMDQGSGEYFVRIGVGSPPRSQYMVIDSGSDIVWVQCQPCSQCYKQSDPVFDPADSASFSGVSCSSAVCDRL 219 (495)
Q Consensus 140 ~~~~p~~~~~~~~~~~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~ 219 (495)
...+|+.. +.+.+|+++|+||||+|++.|+|||||+++||+|..|..|.++.++.|||++|+||+..
T Consensus 127 ~~~v~L~n---~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~~~~C~~~~~yd~s~SsT~~~~---------- 193 (453)
T PTZ00147 127 FDNVELKD---LANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCTTEGCETKNLYDSSKSKTYEKD---------- 193 (453)
T ss_pred CCeeeccc---cCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCCCcccccCCCccCCccCcceEEC----------
Confidence 45566655 56789999999999999999999999999999999998766667889999999999885
Q ss_pred cCCCCCCCCceeeeeeCCCCeEEEEEEEEEEEECCEEeeeeEEEEEEecCCC---C--CCcceEEeeCCCCCCccc----
Q 011042 220 ENAGCHAGRCRYEVSYGDGSYTKGTLALETLTIGRTVVKNVAIGCGHKNQGM---F--VGAAGLLGLGGGSMSLVG---- 290 (495)
Q Consensus 220 ~~~~C~~~~~~~~~~YgdGs~~~G~~~~Dtvt~g~~~~~~~~fG~~~~~~g~---f--~~~~GIlGLg~~~~s~~~---- 290 (495)
++.|++.|++|+. .|.+++|+|++|+.+++ ..|+|+.+..+. + ...+||||||++.++...
T Consensus 194 --------~~~f~i~Yg~Gsv-sG~~~~DtVtiG~~~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~~~~p~ 263 (453)
T PTZ00147 194 --------GTKVEMNYVSGTV-SGFFSKDLVTIGNLSVP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIGSVDPY 263 (453)
T ss_pred --------CCEEEEEeCCCCE-EEEEEEEEEEECCEEEE-EEEEEEEeccCcccccccccccceecccCCccccccCCCH
Confidence 5899999999985 89999999999999888 579998876542 2 468999999998876432
Q ss_pred --cc---cCccCCeEEEEeecCCCCCcceEEecccC---CCCCceEEecccCCCCCeEEEEEeeeeEecCeeeccccccc
Q 011042 291 --QL---GGQTGGAFSYCLVSRGTGSSGSLVFGREA---LPVGAAWVPLVRNPRAPSFYYVGLSGLGVGGMRIPISEDLF 362 (495)
Q Consensus 291 --ql---~~~~~~~FS~cL~~~~~~~~G~L~fGg~~---~~~~~~~tpl~~~~~~~~~y~v~l~gisvgg~~l~i~~~~~ 362 (495)
+| ..+..++||+||++.+.. .|.|+|||+| +.|++.|+|+. ...+|.|.++ +.+|+...
T Consensus 264 ~~~L~~qg~I~~~vFS~~L~~~~~~-~G~L~fGGiD~~ky~G~l~y~pl~----~~~~W~V~l~-~~vg~~~~------- 330 (453)
T PTZ00147 264 VVELKNQNKIEQAVFTFYLPPEDKH-KGYLTIGGIEERFYEGPLTYEKLN----HDLYWQVDLD-VHFGNVSS------- 330 (453)
T ss_pred HHHHHHcCCCCccEEEEEecCCCCC-CeEEEECCcChhhcCCceEEEEcC----CCceEEEEEE-EEECCEec-------
Confidence 33 236678999999875443 7999999998 78999999993 4679999998 47776432
Q ss_pred cccccCCCcEEEccCCceeeecHHHHHHHHHHHHHhhCCCCCCCCcccccccccccCcccccccEEEEEEeCCCEEEeCC
Q 011042 363 RLTQMGDDGVVMDTGTAVTRLPTPAYEAFRDAFVAQTGNLPRASGVSIFDTCYNLSGFVSVRVPTVSFYFSGGPVLTLPA 442 (495)
Q Consensus 363 ~~~~~g~~~~iiDSGTt~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~gg~~~~l~~ 442 (495)
....+||||||+++++|++++++|.+++.... .+. .+.+ ..+|+. ..+|+|+|+|+ |+.++|+|
T Consensus 331 -----~~~~aIiDSGTsli~lP~~~~~ai~~~l~~~~--~~~-~~~y-~~~C~~------~~lP~~~f~f~-g~~~~L~p 394 (453)
T PTZ00147 331 -----EKANVIVDSGTSVITVPTEFLNKFVESLDVFK--VPF-LPLY-VTTCNN------TKLPTLEFRSP-NKVYTLEP 394 (453)
T ss_pred -----CceeEEECCCCchhcCCHHHHHHHHHHhCCee--cCC-CCeE-EEeCCC------CCCCeEEEEEC-CEEEEECH
Confidence 14569999999999999999999999886532 121 1222 337864 46899999997 89999999
Q ss_pred CCeEEEecC-CCceEE-EEEecC--CCceeecHhhhcceEEEEECCCCEEEEeeCC
Q 011042 443 SNFLIPVDD-AGTFCF-AFAPSP--SGLSIIGNIQQEGIQISFDGANGFVGFGPNV 494 (495)
Q Consensus 443 ~~y~~~~~~-~~~~Cl-~~~~~~--~~~~IlG~~fl~~~yvvfD~~~~~IGFa~~~ 494 (495)
++|+.+..+ ....|+ +|++.+ .+.||||++|||++|+|||++++|||||+++
T Consensus 395 ~~yi~~~~~~~~~~C~~~i~~~~~~~~~~ILGd~FLr~~YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 395 EYYLQPIEDIGSALCMLNIIPIDLEKNTFILGDPFMRKYFTVFDYDNHTVGFALAK 450 (453)
T ss_pred HHheeccccCCCcEEEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEec
Confidence 999986432 346796 788753 3579999999999999999999999999874
No 16
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=4.6e-51 Score=420.71 Aligned_cols=308 Identities=25% Similarity=0.405 Sum_probs=236.9
Q ss_pred ceEEEEEeeCCCCceeeEEEecCCCceeEecCCCCCcccCCCCccCCCCCCccccccCCChhcccccCCCCCCCCceeee
Q 011042 154 GEYFVRIGVGSPPRSQYMVIDSGSDIVWVQCQPCSQCYKQSDPVFDPADSASFSGVSCSSAVCDRLENAGCHAGRCRYEV 233 (495)
Q Consensus 154 ~~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~~C~~~~~~~~~ 233 (495)
.+|+++|.||||+|++.|+|||||+++||+|.+|.. .++.|||++|+||+.. .|.|++
T Consensus 2 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~~~----~~~~f~~~~SsT~~~~------------------~~~~~i 59 (364)
T cd05473 2 QGYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPHPF----IHTYFHRELSSTYRDL------------------GKGVTV 59 (364)
T ss_pred CceEEEEEecCCCceEEEEEecCCcceEEEcCCCcc----ccccCCchhCcCcccC------------------CceEEE
Confidence 369999999999999999999999999999988732 4678999999999986 589999
Q ss_pred eeCCCCeEEEEEEEEEEEECCEEee--eeEEEEEEecCCCC---CCcceEEeeCCCCCC------------ccccccCcc
Q 011042 234 SYGDGSYTKGTLALETLTIGRTVVK--NVAIGCGHKNQGMF---VGAAGLLGLGGGSMS------------LVGQLGGQT 296 (495)
Q Consensus 234 ~YgdGs~~~G~~~~Dtvt~g~~~~~--~~~fG~~~~~~g~f---~~~~GIlGLg~~~~s------------~~~ql~~~~ 296 (495)
.|++|+. .|.+++|+|+|++.... .+.|++.+...+.| ...+||||||++.++ +.+|.. +
T Consensus 60 ~Yg~Gs~-~G~~~~D~v~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~~q~~-~- 136 (364)
T cd05473 60 PYTQGSW-EGELGTDLVSIPKGPNVTFRANIAAITESENFFLNGSNWEGILGLAYAELARPDSSVEPFFDSLVKQTG-I- 136 (364)
T ss_pred EECcceE-EEEEEEEEEEECCCCccceEEeeEEEeccccceecccccceeeeecccccccCCCCCCCHHHHHHhccC-C-
Confidence 9999986 89999999999753111 13456666655544 257999999998774 233333 3
Q ss_pred CCeEEEEeecC--------CCCCcceEEecccC---CCCCceEEecccCCCCCeEEEEEeeeeEecCeeecccccccccc
Q 011042 297 GGAFSYCLVSR--------GTGSSGSLVFGREA---LPVGAAWVPLVRNPRAPSFYYVGLSGLGVGGMRIPISEDLFRLT 365 (495)
Q Consensus 297 ~~~FS~cL~~~--------~~~~~G~L~fGg~~---~~~~~~~tpl~~~~~~~~~y~v~l~gisvgg~~l~i~~~~~~~~ 365 (495)
.++||+||... .....|.|+||++| +.+++.|+|++ ...+|.|.+++|+||++.+.++...+.
T Consensus 137 ~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~----~~~~~~v~l~~i~vg~~~~~~~~~~~~-- 210 (364)
T cd05473 137 PDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKGDIWYTPIR----EEWYYEVIILKLEVGGQSLNLDCKEYN-- 210 (364)
T ss_pred ccceEEEecccccccccccccCCCcEEEeCCcCHhhcCCCceEEecC----cceeEEEEEEEEEECCEeccccccccc--
Confidence 56999987421 11137999999987 78899999995 357999999999999998876543331
Q ss_pred ccCCCcEEEccCCceeeecHHHHHHHHHHHHHhhCCCCCCCCc-c-cccccccccCcccccccEEEEEEeCC-----CEE
Q 011042 366 QMGDDGVVMDTGTAVTRLPTPAYEAFRDAFVAQTGNLPRASGV-S-IFDTCYNLSGFVSVRVPTVSFYFSGG-----PVL 438 (495)
Q Consensus 366 ~~g~~~~iiDSGTt~t~lp~~~~~~l~~~~~~~~~~~~~~~~~-~-~~~~C~~~~~~~~~~~P~i~f~f~gg-----~~~ 438 (495)
...+||||||++++||+++|++|+++++++........++ . ...+|++........+|+|+|+|+|+ .++
T Consensus 211 ---~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~g~~~~~~~~l 287 (364)
T cd05473 211 ---YDKAIVDSGTTNLRLPVKVFNAAVDAIKAASLIEDFPDGFWLGSQLACWQKGTTPWEIFPKISIYLRDENSSQSFRI 287 (364)
T ss_pred ---CccEEEeCCCcceeCCHHHHHHHHHHHHhhcccccCCccccCcceeecccccCchHhhCCcEEEEEccCCCCceEEE
Confidence 3469999999999999999999999999875311111111 1 12379875432224699999999842 478
Q ss_pred EeCCCCeEEEecC--CCceEEEEEec-CCCceeecHhhhcceEEEEECCCCEEEEeeCCC
Q 011042 439 TLPASNFLIPVDD--AGTFCFAFAPS-PSGLSIIGNIQQEGIQISFDGANGFVGFGPNVC 495 (495)
Q Consensus 439 ~l~~~~y~~~~~~--~~~~Cl~~~~~-~~~~~IlG~~fl~~~yvvfD~~~~~IGFa~~~C 495 (495)
+|+|++|+++... .+..|+++... ..+.||||++|||++|+|||++++|||||+++|
T Consensus 288 ~l~p~~Y~~~~~~~~~~~~C~~~~~~~~~~~~ILG~~flr~~yvvfD~~~~rIGfa~~~C 347 (364)
T cd05473 288 TILPQLYLRPVEDHGTQLDCYKFAISQSTNGTVIGAVIMEGFYVVFDRANKRVGFAVSTC 347 (364)
T ss_pred EECHHHhhhhhccCCCcceeeEEeeecCCCceEEeeeeEcceEEEEECCCCEEeeEeccc
Confidence 9999999986532 24689754332 335699999999999999999999999999999
No 17
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=2e-50 Score=421.58 Aligned_cols=303 Identities=19% Similarity=0.329 Sum_probs=243.3
Q ss_pred cceeeeecccCCCcceEEEEEeeCCCCceeeEEEecCCCceeEecCCCCCcccCCCCccCCCCCCccccccCCChhcccc
Q 011042 140 DFGTDVVSGMDQGSGEYFVRIGVGSPPRSQYMVIDSGSDIVWVQCQPCSQCYKQSDPVFDPADSASFSGVSCSSAVCDRL 219 (495)
Q Consensus 140 ~~~~p~~~~~~~~~~~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~ 219 (495)
...+|+.. +.+.+|+++|.||||+|++.|+|||||+++||+|..|..+.++.++.|||++|+|++..
T Consensus 126 ~~~~~l~d---~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~~~~C~~~~~yd~s~SsT~~~~---------- 192 (450)
T PTZ00013 126 NDVIELDD---VANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCDSIGCSIKNLYDSSKSKSYEKD---------- 192 (450)
T ss_pred CCceeeec---cCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccCCccccccCCCccCccCcccccC----------
Confidence 34556654 55779999999999999999999999999999999997544456789999999999885
Q ss_pred cCCCCCCCCceeeeeeCCCCeEEEEEEEEEEEECCEEeeeeEEEEEEecCCC---C--CCcceEEeeCCCCCCcc-----
Q 011042 220 ENAGCHAGRCRYEVSYGDGSYTKGTLALETLTIGRTVVKNVAIGCGHKNQGM---F--VGAAGLLGLGGGSMSLV----- 289 (495)
Q Consensus 220 ~~~~C~~~~~~~~~~YgdGs~~~G~~~~Dtvt~g~~~~~~~~fG~~~~~~g~---f--~~~~GIlGLg~~~~s~~----- 289 (495)
+|.|.+.||+|+ +.|.+++|+|++|+.+++ ..|+++.+..+. + ..++||||||++.++..
T Consensus 193 --------~~~~~i~YG~Gs-v~G~~~~Dtv~iG~~~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~p~ 262 (450)
T PTZ00013 193 --------GTKVDITYGSGT-VKGFFSKDLVTLGHLSMP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIGSIDPI 262 (450)
T ss_pred --------CcEEEEEECCce-EEEEEEEEEEEECCEEEc-cEEEEEEeccccccceecccccceecccCCccccccCCCH
Confidence 589999999998 599999999999999887 578888765321 2 36799999999876533
Q ss_pred -cccc---CccCCeEEEEeecCCCCCcceEEecccC---CCCCceEEecccCCCCCeEEEEEeeeeEecCeeeccccccc
Q 011042 290 -GQLG---GQTGGAFSYCLVSRGTGSSGSLVFGREA---LPVGAAWVPLVRNPRAPSFYYVGLSGLGVGGMRIPISEDLF 362 (495)
Q Consensus 290 -~ql~---~~~~~~FS~cL~~~~~~~~G~L~fGg~~---~~~~~~~tpl~~~~~~~~~y~v~l~gisvgg~~l~i~~~~~ 362 (495)
.++. .+..++||+||++.+.. .|.|+|||+| +.|++.|+|+. ...||.|.++ +.+|.....
T Consensus 263 ~~~L~~qg~I~~~vFS~~L~~~~~~-~G~L~fGGiD~~~y~G~L~y~pv~----~~~yW~I~l~-v~~G~~~~~------ 330 (450)
T PTZ00013 263 VVELKNQNKIDNALFTFYLPVHDVH-AGYLTIGGIEEKFYEGNITYEKLN----HDLYWQIDLD-VHFGKQTMQ------ 330 (450)
T ss_pred HHHHHhccCcCCcEEEEEecCCCCC-CCEEEECCcCccccccceEEEEcC----cCceEEEEEE-EEECceecc------
Confidence 3433 36778999999865433 7999999988 78999999994 4679999998 666644321
Q ss_pred cccccCCCcEEEccCCceeeecHHHHHHHHHHHHHhhCCCCCCCCcccccccccccCcccccccEEEEEEeCCCEEEeCC
Q 011042 363 RLTQMGDDGVVMDTGTAVTRLPTPAYEAFRDAFVAQTGNLPRASGVSIFDTCYNLSGFVSVRVPTVSFYFSGGPVLTLPA 442 (495)
Q Consensus 363 ~~~~~g~~~~iiDSGTt~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~gg~~~~l~~ 442 (495)
...+||||||+++++|+++++++.++++... .+ ..+.+ ..+|+. ..+|+|+|+|+ |.+++|+|
T Consensus 331 ------~~~aIlDSGTSli~lP~~~~~~i~~~l~~~~--~~-~~~~y-~~~C~~------~~lP~i~F~~~-g~~~~L~p 393 (450)
T PTZ00013 331 ------KANVIVDSGTTTITAPSEFLNKFFANLNVIK--VP-FLPFY-VTTCDN------KEMPTLEFKSA-NNTYTLEP 393 (450)
T ss_pred ------ccceEECCCCccccCCHHHHHHHHHHhCCee--cC-CCCeE-EeecCC------CCCCeEEEEEC-CEEEEECH
Confidence 4569999999999999999999998886442 11 12222 237864 46899999997 89999999
Q ss_pred CCeEEEec-CCCceEE-EEEecC--CCceeecHhhhcceEEEEECCCCEEEEeeCC
Q 011042 443 SNFLIPVD-DAGTFCF-AFAPSP--SGLSIIGNIQQEGIQISFDGANGFVGFGPNV 494 (495)
Q Consensus 443 ~~y~~~~~-~~~~~Cl-~~~~~~--~~~~IlG~~fl~~~yvvfD~~~~~IGFa~~~ 494 (495)
++|+.+.. ..+..|+ +|.+.+ .+.||||++|||++|+|||++++|||||+++
T Consensus 394 ~~Yi~~~~~~~~~~C~~~i~~~~~~~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 394 EYYMNPLLDVDDTLCMITMLPVDIDDNTFILGDPFMRKYFTVFDYDKESVGFAIAK 449 (450)
T ss_pred HHheehhccCCCCeeEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEeC
Confidence 99998643 2356896 787643 3579999999999999999999999999875
No 18
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=6.2e-51 Score=403.58 Aligned_cols=254 Identities=32% Similarity=0.687 Sum_probs=216.2
Q ss_pred ceEEEEEeeCCCCceeeEEEecCCCceeEec-CCCCCcccCCCCccCCCCCCccccccCCChhcccccCCCCCCCCceee
Q 011042 154 GEYFVRIGVGSPPRSQYMVIDSGSDIVWVQC-QPCSQCYKQSDPVFDPADSASFSGVSCSSAVCDRLENAGCHAGRCRYE 232 (495)
Q Consensus 154 ~~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~-~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~~C~~~~~~~~ 232 (495)
++|+++|.||||+|++.|+|||||+++||+| .+|..| .|.|+
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~~c-------------------------------------~c~~~ 43 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCTGC-------------------------------------QCDYE 43 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCCCC-------------------------------------cCccE
Confidence 5799999999999999999999999999999 467666 27899
Q ss_pred eeeCCCCeEEEEEEEEEEEEC----CEEeeeeEEEEEEecCCCC----CCcceEEeeCCCCCCccccccC--ccCCeEEE
Q 011042 233 VSYGDGSYTKGTLALETLTIG----RTVVKNVAIGCGHKNQGMF----VGAAGLLGLGGGSMSLVGQLGG--QTGGAFSY 302 (495)
Q Consensus 233 ~~YgdGs~~~G~~~~Dtvt~g----~~~~~~~~fG~~~~~~g~f----~~~~GIlGLg~~~~s~~~ql~~--~~~~~FS~ 302 (495)
+.|+||+.+.|.+++|+|+|+ +..++++.|||++.+.+.+ ...+||||||++++++++|+.. ..+++||+
T Consensus 44 i~Ygd~~~~~G~~~~D~v~~~~~~~~~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ql~~~~~i~~~Fs~ 123 (273)
T cd05475 44 IEYADGGSSMGVLVTDIFSLKLTNGSRAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKISLPSQLASQGIIKNVIGH 123 (273)
T ss_pred eEeCCCCceEEEEEEEEEEEeecCCCcccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCCHHHHHHhcCCcCceEEE
Confidence 999988888999999999995 3477899999998876543 4689999999999999999864 22789999
Q ss_pred EeecCCCCCcceEEecccC-CCCCceEEecccCCCCCeEEEEEeeeeEecCeeeccccccccccccCCCcEEEccCCcee
Q 011042 303 CLVSRGTGSSGSLVFGREA-LPVGAAWVPLVRNPRAPSFYYVGLSGLGVGGMRIPISEDLFRLTQMGDDGVVMDTGTAVT 381 (495)
Q Consensus 303 cL~~~~~~~~G~L~fGg~~-~~~~~~~tpl~~~~~~~~~y~v~l~gisvgg~~l~i~~~~~~~~~~g~~~~iiDSGTt~t 381 (495)
||++. ..|.|+||+.. +.+++.|+|+..++ ...+|.|++.+|+||++.+.. +...+||||||+++
T Consensus 124 ~l~~~---~~g~l~~G~~~~~~g~i~ytpl~~~~-~~~~y~v~l~~i~vg~~~~~~----------~~~~~ivDTGTt~t 189 (273)
T cd05475 124 CLSSN---GGGFLFFGDDLVPSSGVTWTPMRRES-QKKHYSPGPASLLFNGQPTGG----------KGLEVVFDSGSSYT 189 (273)
T ss_pred EccCC---CCeEEEECCCCCCCCCeeecccccCC-CCCeEEEeEeEEEECCEECcC----------CCceEEEECCCceE
Confidence 99863 26999999754 66789999997654 357999999999999985421 25679999999999
Q ss_pred eecHHHHHHHHHHHHHhhCCCCCCCCcccccccccccCcccccccEEEEEEeCC---CEEEeCCCCeEEEecCCCceEEE
Q 011042 382 RLPTPAYEAFRDAFVAQTGNLPRASGVSIFDTCYNLSGFVSVRVPTVSFYFSGG---PVLTLPASNFLIPVDDAGTFCFA 458 (495)
Q Consensus 382 ~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~gg---~~~~l~~~~y~~~~~~~~~~Cl~ 458 (495)
+||+++| +|+|+|+|+++ ++++|++++|+++.. .+..|++
T Consensus 190 ~lp~~~y------------------------------------~p~i~~~f~~~~~~~~~~l~~~~y~~~~~-~~~~Cl~ 232 (273)
T cd05475 190 YFNAQAY------------------------------------FKPLTLKFGKGWRTRLLEIPPENYLIISE-KGNVCLG 232 (273)
T ss_pred EcCCccc------------------------------------cccEEEEECCCCceeEEEeCCCceEEEcC-CCCEEEE
Confidence 9999876 58999999843 799999999999765 4678998
Q ss_pred EEecC----CCceeecHhhhcceEEEEECCCCEEEEeeCCC
Q 011042 459 FAPSP----SGLSIIGNIQQEGIQISFDGANGFVGFGPNVC 495 (495)
Q Consensus 459 ~~~~~----~~~~IlG~~fl~~~yvvfD~~~~~IGFa~~~C 495 (495)
+.... .+.||||+.|||++|++||++++|||||+++|
T Consensus 233 ~~~~~~~~~~~~~ilG~~~l~~~~~vfD~~~~riGfa~~~C 273 (273)
T cd05475 233 ILNGSEIGLGNTNIIGDISMQGLMVIYDNEKQQIGWVRSDC 273 (273)
T ss_pred EecCCCcCCCceEEECceEEEeeEEEEECcCCEeCcccCCC
Confidence 87542 24699999999999999999999999999999
No 19
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=1.3e-50 Score=399.62 Aligned_cols=258 Identities=47% Similarity=0.932 Sum_probs=225.2
Q ss_pred eEEEEEeeCCCCceeeEEEecCCCceeEecCCCCCcccCCCCccCCCCCCccccccCCChhcccccCCCCCCCCceeeee
Q 011042 155 EYFVRIGVGSPPRSQYMVIDSGSDIVWVQCQPCSQCYKQSDPVFDPADSASFSGVSCSSAVCDRLENAGCHAGRCRYEVS 234 (495)
Q Consensus 155 ~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~~C~~~~~~~~~~ 234 (495)
+|+++|+||||+|++.|+|||||+++||+| |.|.+.
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~--------------------------------------------~~~~~~ 36 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC--------------------------------------------CSYEYS 36 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC--------------------------------------------CceEeE
Confidence 699999999999999999999999999986 347899
Q ss_pred eCCCCeEEEEEEEEEEEECCE--EeeeeEEEEEEecCCCC-CCcceEEeeCCCCCCccccccCccCCeEEEEeecCC-CC
Q 011042 235 YGDGSYTKGTLALETLTIGRT--VVKNVAIGCGHKNQGMF-VGAAGLLGLGGGSMSLVGQLGGQTGGAFSYCLVSRG-TG 310 (495)
Q Consensus 235 YgdGs~~~G~~~~Dtvt~g~~--~~~~~~fG~~~~~~g~f-~~~~GIlGLg~~~~s~~~ql~~~~~~~FS~cL~~~~-~~ 310 (495)
|+||+...|.+++|+|+|++. .++++.|||++...+.. ..++||||||+..+|++.|+.... ++||+||.+.. ..
T Consensus 37 Y~dg~~~~G~~~~D~v~~g~~~~~~~~~~Fg~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~-~~Fs~~l~~~~~~~ 115 (265)
T cd05476 37 YGDGSSTSGVLATETFTFGDSSVSVPNVAFGCGTDNEGGSFGGADGILGLGRGPLSLVSQLGSTG-NKFSYCLVPHDDTG 115 (265)
T ss_pred eCCCceeeeeEEEEEEEecCCCCccCCEEEEecccccCCccCCCCEEEECCCCcccHHHHhhccc-CeeEEEccCCCCCC
Confidence 999988899999999999988 89999999999887622 678999999999999999997654 89999998742 22
Q ss_pred CcceEEecccC--CCCCceEEecccCCCCCeEEEEEeeeeEecCeeeccccccccccccCCCcEEEccCCceeeecHHHH
Q 011042 311 SSGSLVFGREA--LPVGAAWVPLVRNPRAPSFYYVGLSGLGVGGMRIPISEDLFRLTQMGDDGVVMDTGTAVTRLPTPAY 388 (495)
Q Consensus 311 ~~G~L~fGg~~--~~~~~~~tpl~~~~~~~~~y~v~l~gisvgg~~l~i~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~~ 388 (495)
..|+|+||+.| +.+++.|+|++.++....+|.|++++|+|+++.+.+++..+.........+||||||++++||+++|
T Consensus 116 ~~G~l~fGg~d~~~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGTs~~~lp~~~~ 195 (265)
T cd05476 116 GSSPLILGDAADLGGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTLTYLPDPAY 195 (265)
T ss_pred CCCeEEECCcccccCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCCcceEcCcccc
Confidence 47999999988 4689999999866545679999999999999998766554433334467799999999999999877
Q ss_pred HHHHHHHHHhhCCCCCCCCcccccccccccCcccccccEEEEEEeCCCEEEeCCCCeEEEecCCCceEEEEEec-CCCce
Q 011042 389 EAFRDAFVAQTGNLPRASGVSIFDTCYNLSGFVSVRVPTVSFYFSGGPVLTLPASNFLIPVDDAGTFCFAFAPS-PSGLS 467 (495)
Q Consensus 389 ~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~gg~~~~l~~~~y~~~~~~~~~~Cl~~~~~-~~~~~ 467 (495)
|+|+|+|++|+++.+++++|+++.. .+..|+++... ..+.|
T Consensus 196 -------------------------------------P~i~~~f~~~~~~~i~~~~y~~~~~-~~~~C~~~~~~~~~~~~ 237 (265)
T cd05476 196 -------------------------------------PDLTLHFDGGADLELPPENYFVDVG-EGVVCLAILSSSSGGVS 237 (265)
T ss_pred -------------------------------------CCEEEEECCCCEEEeCcccEEEECC-CCCEEEEEecCCCCCcE
Confidence 8899999878999999999999654 56799998876 45689
Q ss_pred eecHhhhcceEEEEECCCCEEEEeeCCC
Q 011042 468 IIGNIQQEGIQISFDGANGFVGFGPNVC 495 (495)
Q Consensus 468 IlG~~fl~~~yvvfD~~~~~IGFa~~~C 495 (495)
|||++|||++|++||++++|||||+++|
T Consensus 238 ilG~~fl~~~~~vFD~~~~~iGfa~~~C 265 (265)
T cd05476 238 ILGNIQQQNFLVEYDLENSRLGFAPADC 265 (265)
T ss_pred EEChhhcccEEEEEECCCCEEeeecCCC
Confidence 9999999999999999999999999999
No 20
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=3.1e-48 Score=385.30 Aligned_cols=262 Identities=26% Similarity=0.431 Sum_probs=218.5
Q ss_pred EEEEEeeCCCCceeeEEEecCCCceeEecCCCCCcccCCCCccCCCCCCccccccCCChhcccccCCCCCCCCceeeeee
Q 011042 156 YFVRIGVGSPPRSQYMVIDSGSDIVWVQCQPCSQCYKQSDPVFDPADSASFSGVSCSSAVCDRLENAGCHAGRCRYEVSY 235 (495)
Q Consensus 156 Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~~C~~~~~~~~~~Y 235 (495)
|+++|+||||+|++.|+|||||+++||+|..|..|.++.++.|||++|+|++..+ .|.|.+.|
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~~~~~~~~~~y~~~~Sst~~~~~-----------------~~~~~i~Y 63 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETPAAQQGGHKLYDPSKSSTAKLLP-----------------GATWSISY 63 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCCchhhccCCcCCCccCccceecC-----------------CcEEEEEe
Confidence 7899999999999999999999999999999999988888899999999998763 58999999
Q ss_pred CCCCeEEEEEEEEEEEECCEEeeeeEEEEEEecCCC-C--CCcceEEeeCCCCCCcccc---------cc-CccCCeEEE
Q 011042 236 GDGSYTKGTLALETLTIGRTVVKNVAIGCGHKNQGM-F--VGAAGLLGLGGGSMSLVGQ---------LG-GQTGGAFSY 302 (495)
Q Consensus 236 gdGs~~~G~~~~Dtvt~g~~~~~~~~fG~~~~~~g~-f--~~~~GIlGLg~~~~s~~~q---------l~-~~~~~~FS~ 302 (495)
++|+.+.|.+++|+|+|++.+++++.|||++...+. + ...+||||||++.++...+ +. ....+.||+
T Consensus 64 ~~G~~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~~~~~~Fs~ 143 (278)
T cd06097 64 GDGSSASGIVYTDTVSIGGVEVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTFFENALSSLDAPLFTA 143 (278)
T ss_pred CCCCeEEEEEEEEEEEECCEEECCeEEEEEeecCccccccccccceeeeccccccccccCCCCCHHHHHHHhccCceEEE
Confidence 999877999999999999999999999999987653 2 5789999999987765432 11 122579999
Q ss_pred EeecCCCCCcceEEecccC---CCCCceEEecccCCCCCeEEEEEeeeeEecCeeeccccccccccccCCCcEEEccCCc
Q 011042 303 CLVSRGTGSSGSLVFGREA---LPVGAAWVPLVRNPRAPSFYYVGLSGLGVGGMRIPISEDLFRLTQMGDDGVVMDTGTA 379 (495)
Q Consensus 303 cL~~~~~~~~G~L~fGg~~---~~~~~~~tpl~~~~~~~~~y~v~l~gisvgg~~l~i~~~~~~~~~~g~~~~iiDSGTt 379 (495)
||.+. ..|.|+|||+| +.|++.|+|++. ...+|.|++++|+||++..... .+..+||||||+
T Consensus 144 ~l~~~---~~G~l~fGg~D~~~~~g~l~~~pi~~---~~~~w~v~l~~i~v~~~~~~~~---------~~~~~iiDSGTs 208 (278)
T cd06097 144 DLRKA---APGFYTFGYIDESKYKGEISWTPVDN---SSGFWQFTSTSYTVGGDAPWSR---------SGFSAIADTGTT 208 (278)
T ss_pred EecCC---CCcEEEEeccChHHcCCceEEEEccC---CCcEEEEEEeeEEECCcceeec---------CCceEEeecCCc
Confidence 99862 37999999988 789999999963 2579999999999999843221 256799999999
Q ss_pred eeeecHHHHHHHHHHHHHhhCCCCCCCCcccccccccccCcccccccEEEEEEeCCCEEEeCCCCeEEEecCCCceEEEE
Q 011042 380 VTRLPTPAYEAFRDAFVAQTGNLPRASGVSIFDTCYNLSGFVSVRVPTVSFYFSGGPVLTLPASNFLIPVDDAGTFCFAF 459 (495)
Q Consensus 380 ~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~gg~~~~l~~~~y~~~~~~~~~~Cl~~ 459 (495)
++++|++++++|.+++.+.. +....+.+.+ +|.. .+|+|+|+|
T Consensus 209 ~~~lP~~~~~~l~~~l~g~~--~~~~~~~~~~-~C~~-------~~P~i~f~~--------------------------- 251 (278)
T cd06097 209 LILLPDAIVEAYYSQVPGAY--YDSEYGGWVF-PCDT-------TLPDLSFAV--------------------------- 251 (278)
T ss_pred hhcCCHHHHHHHHHhCcCCc--ccCCCCEEEE-ECCC-------CCCCEEEEE---------------------------
Confidence 99999999999999884331 1222222222 5642 289999999
Q ss_pred EecCCCceeecHhhhcceEEEEECCCCEEEEee
Q 011042 460 APSPSGLSIIGNIQQEGIQISFDGANGFVGFGP 492 (495)
Q Consensus 460 ~~~~~~~~IlG~~fl~~~yvvfD~~~~~IGFa~ 492 (495)
.||||++|||++|+|||++++|||||+
T Consensus 252 ------~~ilGd~fl~~~y~vfD~~~~~ig~A~ 278 (278)
T cd06097 252 ------FSILGDVFLKAQYVVFDVGGPKLGFAP 278 (278)
T ss_pred ------EEEEcchhhCceeEEEcCCCceeeecC
Confidence 699999999999999999999999996
No 21
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=3.9e-47 Score=380.32 Aligned_cols=271 Identities=25% Similarity=0.447 Sum_probs=227.0
Q ss_pred eEEEEEeeCCCCceeeEEEecCCCceeEecCCCCCcccCCCCccCCCCCCccccccCCChhcccccCCCCCCCCceeeee
Q 011042 155 EYFVRIGVGSPPRSQYMVIDSGSDIVWVQCQPCSQCYKQSDPVFDPADSASFSGVSCSSAVCDRLENAGCHAGRCRYEVS 234 (495)
Q Consensus 155 ~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~~C~~~~~~~~~~ 234 (495)
.|+++|.||||+|++.|+|||||+++||+ .|++.
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~----------------------------------------------~~~~~ 35 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP----------------------------------------------DFSIS 35 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee----------------------------------------------eeEEE
Confidence 69999999999999999999999999996 36889
Q ss_pred eCCCCeEEEEEEEEEEEECCEEeeeeEEEEEEecCCCCCCcceEEeeCCCCC-----------CccccccC---ccCCeE
Q 011042 235 YGDGSYTKGTLALETLTIGRTVVKNVAIGCGHKNQGMFVGAAGLLGLGGGSM-----------SLVGQLGG---QTGGAF 300 (495)
Q Consensus 235 YgdGs~~~G~~~~Dtvt~g~~~~~~~~fG~~~~~~g~f~~~~GIlGLg~~~~-----------s~~~ql~~---~~~~~F 300 (495)
|++|+.+.|.+++|+|+|++..++++.|||+++.. ..+||||||+++. +++.|+.. +.++.|
T Consensus 36 Y~~g~~~~G~~~~D~v~~g~~~~~~~~fg~~~~~~----~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~~~g~i~~~~F 111 (295)
T cd05474 36 YGDGTSASGTWGTDTVSIGGATVKNLQFAVANSTS----SDVGVLGIGLPGNEATYGTGYTYPNFPIALKKQGLIKKNAY 111 (295)
T ss_pred eccCCcEEEEEEEEEEEECCeEecceEEEEEecCC----CCcceeeECCCCCcccccCCCcCCCHHHHHHHCCcccceEE
Confidence 99988789999999999999999999999999853 5799999999886 56666653 567899
Q ss_pred EEEeecCCCCCcceEEecccC---CCCCceEEecccCCC--CCeEEEEEeeeeEecCeeeccccccccccccCCCcEEEc
Q 011042 301 SYCLVSRGTGSSGSLVFGREA---LPVGAAWVPLVRNPR--APSFYYVGLSGLGVGGMRIPISEDLFRLTQMGDDGVVMD 375 (495)
Q Consensus 301 S~cL~~~~~~~~G~L~fGg~~---~~~~~~~tpl~~~~~--~~~~y~v~l~gisvgg~~l~i~~~~~~~~~~g~~~~iiD 375 (495)
|+||.+.+.. .|.|+||++| +.+++.|+|++.++. ...+|.|.+++|+|+++.+..+.. .+...+|||
T Consensus 112 sl~l~~~~~~-~g~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~------~~~~~~iiD 184 (295)
T cd05474 112 SLYLNDLDAS-TGSILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTLL------SKNLPALLD 184 (295)
T ss_pred EEEeCCCCCC-ceeEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCccccc------CCCccEEEC
Confidence 9999875433 7999999987 678999999975532 237999999999999998754211 235779999
Q ss_pred cCCceeeecHHHHHHHHHHHHHhhCCCCCCCCcccccccccccCcccccccEEEEEEeCCCEEEeCCCCeEEEecC---C
Q 011042 376 TGTAVTRLPTPAYEAFRDAFVAQTGNLPRASGVSIFDTCYNLSGFVSVRVPTVSFYFSGGPVLTLPASNFLIPVDD---A 452 (495)
Q Consensus 376 SGTt~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~gg~~~~l~~~~y~~~~~~---~ 452 (495)
|||++++||++++++|.+++.+... ...+.. ..+|+.. .. |+|+|+|+ |++++||+++|+++... .
T Consensus 185 SGt~~~~lP~~~~~~l~~~~~~~~~---~~~~~~-~~~C~~~-----~~-p~i~f~f~-g~~~~i~~~~~~~~~~~~~~~ 253 (295)
T cd05474 185 SGTTLTYLPSDIVDAIAKQLGATYD---SDEGLY-VVDCDAK-----DD-GSLTFNFG-GATISVPLSDLVLPASTDDGG 253 (295)
T ss_pred CCCccEeCCHHHHHHHHHHhCCEEc---CCCcEE-EEeCCCC-----CC-CEEEEEEC-CeEEEEEHHHhEeccccCCCC
Confidence 9999999999999999999987643 112222 3378764 34 99999997 89999999999997642 3
Q ss_pred CceE-EEEEecCCCceeecHhhhcceEEEEECCCCEEEEeeC
Q 011042 453 GTFC-FAFAPSPSGLSIIGNIQQEGIQISFDGANGFVGFGPN 493 (495)
Q Consensus 453 ~~~C-l~~~~~~~~~~IlG~~fl~~~yvvfD~~~~~IGFa~~ 493 (495)
+..| ++|.+.+.+.||||++|||++|++||.+++|||||++
T Consensus 254 ~~~C~~~i~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 254 DGACYLGIQPSTSDYNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred CCCeEEEEEeCCCCcEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 6789 5898876578999999999999999999999999986
No 22
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=2.9e-46 Score=377.01 Aligned_cols=294 Identities=30% Similarity=0.605 Sum_probs=244.7
Q ss_pred eEEEEEeeCCCCceeeEEEecCCCceeEecCCCCCc-ccCCCCccCCCCCCccccccCCChhcccccCCCCCCCCceeee
Q 011042 155 EYFVRIGVGSPPRSQYMVIDSGSDIVWVQCQPCSQC-YKQSDPVFDPADSASFSGVSCSSAVCDRLENAGCHAGRCRYEV 233 (495)
Q Consensus 155 ~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~C~~C-~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~~C~~~~~~~~~ 233 (495)
+|+++|.||||+|++.|++||||+.+||++..|..| .+.....|+|++|+|++.. .+.+.+
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~~~~~~~~~y~~~~S~t~~~~------------------~~~~~~ 62 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSCSSCASSGFYNPSKSSTFSNQ------------------GKPFSI 62 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSHTHHCTSC-BBGGGSTTEEEE------------------EEEEEE
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceeccccccccccccccccccccccccc------------------eeeeee
Confidence 599999999999999999999999999999999877 5567789999999999986 588999
Q ss_pred eeCCCCeEEEEEEEEEEEECCEEeeeeEEEEEEecCCC-C--CCcceEEeeCCCCC-------Ccccccc---CccCCeE
Q 011042 234 SYGDGSYTKGTLALETLTIGRTVVKNVAIGCGHKNQGM-F--VGAAGLLGLGGGSM-------SLVGQLG---GQTGGAF 300 (495)
Q Consensus 234 ~YgdGs~~~G~~~~Dtvt~g~~~~~~~~fG~~~~~~g~-f--~~~~GIlGLg~~~~-------s~~~ql~---~~~~~~F 300 (495)
.|++|+ .+|.+++|+|+|++..++++.||++....+. + ...+||||||+... +++.++. .+..++|
T Consensus 63 ~y~~g~-~~G~~~~D~v~ig~~~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~g~i~~~~f 141 (317)
T PF00026_consen 63 SYGDGS-VSGNLVSDTVSIGGLTIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQGLISSNVF 141 (317)
T ss_dssp EETTEE-EEEEEEEEEEEETTEEEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHTTSSSSSEE
T ss_pred eccCcc-cccccccceEeeeeccccccceeccccccccccccccccccccccCCcccccccCCcceecchhhcccccccc
Confidence 999999 6999999999999999999999999996543 2 68899999997543 3444443 3678999
Q ss_pred EEEeecCCCCCcceEEecccC---CCCCceEEecccCCCCCeEEEEEeeeeEecCeeeccccccccccccCCCcEEEccC
Q 011042 301 SYCLVSRGTGSSGSLVFGREA---LPVGAAWVPLVRNPRAPSFYYVGLSGLGVGGMRIPISEDLFRLTQMGDDGVVMDTG 377 (495)
Q Consensus 301 S~cL~~~~~~~~G~L~fGg~~---~~~~~~~tpl~~~~~~~~~y~v~l~gisvgg~~l~i~~~~~~~~~~g~~~~iiDSG 377 (495)
|++|.+... ..|.|+||+.| +.++++|+|+. ...+|.|.+++|+++++...... ...++||||
T Consensus 142 sl~l~~~~~-~~g~l~~Gg~d~~~~~g~~~~~~~~----~~~~w~v~~~~i~i~~~~~~~~~---------~~~~~~Dtg 207 (317)
T PF00026_consen 142 SLYLNPSDS-QNGSLTFGGYDPSKYDGDLVWVPLV----SSGYWSVPLDSISIGGESVFSSS---------GQQAILDTG 207 (317)
T ss_dssp EEEEESTTS-SEEEEEESSEEGGGEESEEEEEEBS----STTTTEEEEEEEEETTEEEEEEE---------EEEEEEETT
T ss_pred ceeeeeccc-ccchheeeccccccccCceeccCcc----ccccccccccccccccccccccc---------ceeeecccc
Confidence 999998753 37999999987 78899999995 56789999999999999332221 234999999
Q ss_pred CceeeecHHHHHHHHHHHHHhhCCCCCCCCcccccccccccCcccccccEEEEEEeCCCEEEeCCCCeEEEecCC-CceE
Q 011042 378 TAVTRLPTPAYEAFRDAFVAQTGNLPRASGVSIFDTCYNLSGFVSVRVPTVSFYFSGGPVLTLPASNFLIPVDDA-GTFC 456 (495)
Q Consensus 378 Tt~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~gg~~~~l~~~~y~~~~~~~-~~~C 456 (495)
|++++||.+++++|++++...... +...+ +|.. ...+|.|+|+|+ +.+++|++++|+++.... ...|
T Consensus 208 t~~i~lp~~~~~~i~~~l~~~~~~-----~~~~~-~c~~-----~~~~p~l~f~~~-~~~~~i~~~~~~~~~~~~~~~~C 275 (317)
T PF00026_consen 208 TSYIYLPRSIFDAIIKALGGSYSD-----GVYSV-PCNS-----TDSLPDLTFTFG-GVTFTIPPSDYIFKIEDGNGGYC 275 (317)
T ss_dssp BSSEEEEHHHHHHHHHHHTTEEEC-----SEEEE-ETTG-----GGGSEEEEEEET-TEEEEEEHHHHEEEESSTTSSEE
T ss_pred cccccccchhhHHHHhhhcccccc-----eeEEE-eccc-----ccccceEEEeeC-CEEEEecchHhccccccccccee
Confidence 999999999999999999877532 22222 5643 367899999997 899999999999987642 3489
Q ss_pred E-EEEe----cCCCceeecHhhhcceEEEEECCCCEEEEeeC
Q 011042 457 F-AFAP----SPSGLSIIGNIQQEGIQISFDGANGFVGFGPN 493 (495)
Q Consensus 457 l-~~~~----~~~~~~IlG~~fl~~~yvvfD~~~~~IGFa~~ 493 (495)
. +|.+ .....+|||.+|||++|++||.+++|||||++
T Consensus 276 ~~~i~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 276 YLGIQPMDSSDDSDDWILGSPFLRNYYVVFDYENNRIGFAQA 317 (317)
T ss_dssp EESEEEESSTTSSSEEEEEHHHHTTEEEEEETTTTEEEEEEE
T ss_pred EeeeecccccccCCceEecHHHhhceEEEEeCCCCEEEEecC
Confidence 5 7777 24467999999999999999999999999985
No 23
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=2.3e-44 Score=357.02 Aligned_cols=266 Identities=33% Similarity=0.650 Sum_probs=224.2
Q ss_pred EEEEEeeCCCCceeeEEEecCCCceeEecCCCCCcccCCCCc--cCCCCCCccccccCCChhcccccCCCCCCCCceeee
Q 011042 156 YFVRIGVGSPPRSQYMVIDSGSDIVWVQCQPCSQCYKQSDPV--FDPADSASFSGVSCSSAVCDRLENAGCHAGRCRYEV 233 (495)
Q Consensus 156 Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~C~~C~~~~~~~--fdps~SsT~~~~~C~~~~C~~~~~~~C~~~~~~~~~ 233 (495)
|+++|.||||+|++.|+|||||+++||+|..|..|.++.... |++..|+++.. ..|.|.+
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~~~~~~~~~~~~~~~~~s~~~~~------------------~~~~~~~ 62 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCTSCSCQKHPRFKYDSSKSSTYKD------------------TGCTFSI 62 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCCccccccCCCCccCccCCceeec------------------CCCEEEE
Confidence 789999999999999999999999999999999887666655 78888777765 3699999
Q ss_pred eeCCCCeEEEEEEEEEEEECCEEeeeeEEEEEEecCCCC--CCcceEEeeCCCC------CCccccccC---ccCCeEEE
Q 011042 234 SYGDGSYTKGTLALETLTIGRTVVKNVAIGCGHKNQGMF--VGAAGLLGLGGGS------MSLVGQLGG---QTGGAFSY 302 (495)
Q Consensus 234 ~YgdGs~~~G~~~~Dtvt~g~~~~~~~~fG~~~~~~g~f--~~~~GIlGLg~~~------~s~~~ql~~---~~~~~FS~ 302 (495)
.|++|+. .|.+++|+|+|++..++++.|||++...+.+ ...+||||||++. .+++.|+.. +.+++||+
T Consensus 63 ~Y~~g~~-~g~~~~D~v~~~~~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~i~~~~Fs~ 141 (283)
T cd05471 63 TYGDGSV-TGGLGTDTVTIGGLTIPNQTFGCATSESGDFSSSGFDGILGLGFPSLSVDGVPSFFDQLKSQGLISSPVFSF 141 (283)
T ss_pred EECCCeE-EEEEEEeEEEECCEEEeceEEEEEeccCCcccccccceEeecCCcccccccCCCHHHHHHHCCCCCCCEEEE
Confidence 9999876 8999999999999999999999999987533 6789999999998 678888765 56799999
Q ss_pred EeecCC-CCCcceEEecccC---CCCCceEEecccCCCCCeEEEEEeeeeEecCeeeccccccccccccCCCcEEEccCC
Q 011042 303 CLVSRG-TGSSGSLVFGREA---LPVGAAWVPLVRNPRAPSFYYVGLSGLGVGGMRIPISEDLFRLTQMGDDGVVMDTGT 378 (495)
Q Consensus 303 cL~~~~-~~~~G~L~fGg~~---~~~~~~~tpl~~~~~~~~~y~v~l~gisvgg~~l~i~~~~~~~~~~g~~~~iiDSGT 378 (495)
||.+.. ....|.|+||+.+ +.+++.|+|++.+ ...+|.|.+++|.|+++.... ......+||||||
T Consensus 142 ~l~~~~~~~~~g~l~~Gg~d~~~~~~~~~~~p~~~~--~~~~~~v~l~~i~v~~~~~~~--------~~~~~~~iiDsGt 211 (283)
T cd05471 142 YLGRDGDGGNGGELTFGGIDPSKYTGDLTYTPVVSN--GPGYWQVPLDGISVGGKSVIS--------SSGGGGAIVDSGT 211 (283)
T ss_pred EEcCCCCCCCCCEEEEcccCccccCCceEEEecCCC--CCCEEEEEeCeEEECCceeee--------cCCCcEEEEecCC
Confidence 999852 1247999999988 5789999999743 367999999999999975111 1236679999999
Q ss_pred ceeeecHHHHHHHHHHHHHhhCCCCCCCCcccccccccccCcccccccEEEEEEeCCCEEEeCCCCeEEEecCCCceEEE
Q 011042 379 AVTRLPTPAYEAFRDAFVAQTGNLPRASGVSIFDTCYNLSGFVSVRVPTVSFYFSGGPVLTLPASNFLIPVDDAGTFCFA 458 (495)
Q Consensus 379 t~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~gg~~~~l~~~~y~~~~~~~~~~Cl~ 458 (495)
++++||+++|++|++++...... ...|+...+.....+|+|+|+|
T Consensus 212 ~~~~lp~~~~~~l~~~~~~~~~~---------~~~~~~~~~~~~~~~p~i~f~f-------------------------- 256 (283)
T cd05471 212 SLIYLPSSVYDAILKALGAAVSS---------SDGGYGVDCSPCDTLPDITFTF-------------------------- 256 (283)
T ss_pred CCEeCCHHHHHHHHHHhCCcccc---------cCCcEEEeCcccCcCCCEEEEE--------------------------
Confidence 99999999999999999887532 1134444444447899999999
Q ss_pred EEecCCCceeecHhhhcceEEEEECCCCEEEEee
Q 011042 459 FAPSPSGLSIIGNIQQEGIQISFDGANGFVGFGP 492 (495)
Q Consensus 459 ~~~~~~~~~IlG~~fl~~~yvvfD~~~~~IGFa~ 492 (495)
.+|||++|||++|++||.++++||||+
T Consensus 257 -------~~ilG~~fl~~~y~vfD~~~~~igfa~ 283 (283)
T cd05471 257 -------LWILGDVFLRNYYTVFDLDNNRIGFAP 283 (283)
T ss_pred -------EEEccHhhhhheEEEEeCCCCEEeecC
Confidence 699999999999999999999999985
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=100.00 E-value=2.3e-32 Score=249.95 Aligned_cols=155 Identities=46% Similarity=0.916 Sum_probs=129.1
Q ss_pred EEEEEeeCCCCceeeEEEecCCCceeEecCCCCCcccCCCCccCCCCCCccccccCCChhcccccCC--CCC--CCCcee
Q 011042 156 YFVRIGVGSPPRSQYMVIDSGSDIVWVQCQPCSQCYKQSDPVFDPADSASFSGVSCSSAVCDRLENA--GCH--AGRCRY 231 (495)
Q Consensus 156 Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~--~C~--~~~~~~ 231 (495)
|+++|.||||+|++.|+|||||+++|++| .++.|+|++|+||+.++|.++.|...... .|. +..|.|
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C---------~~~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~~~~~~~C~y 71 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQC---------PDPPFDPSKSSTYRPVPCSSPQCSSAPSFCPCCCCSNNSCPY 71 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET-------------STT-TTSSBEC-BTTSHHHHHCTSSBTCCTCESSEEEE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcC---------CCcccCCccCCcccccCCCCcchhhcccccccCCCCcCcccc
Confidence 89999999999999999999999999998 47899999999999999999999988643 333 488999
Q ss_pred eeeeCCCCeEEEEEEEEEEEECC-----EEeeeeEEEEEEecCCCCCCcceEEeeCCCCCCccccccCccCCeEEEEeec
Q 011042 232 EVSYGDGSYTKGTLALETLTIGR-----TVVKNVAIGCGHKNQGMFVGAAGLLGLGGGSMSLVGQLGGQTGGAFSYCLVS 306 (495)
Q Consensus 232 ~~~YgdGs~~~G~~~~Dtvt~g~-----~~~~~~~fG~~~~~~g~f~~~~GIlGLg~~~~s~~~ql~~~~~~~FS~cL~~ 306 (495)
.+.|+|++.+.|.+++|+|+++. ..+.++.|||++...+.+..++||||||++++||++|+.....++|||||++
T Consensus 72 ~~~y~~~s~~~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~g~~~~~~GilGLg~~~~Sl~sQl~~~~~~~FSyCL~~ 151 (164)
T PF14543_consen 72 SQSYGDGSSSSGFLASDTLTFGSSSGGSNSVPDFIFGCATSNSGLFYGADGILGLGRGPLSLPSQLASSSGNKFSYCLPS 151 (164)
T ss_dssp EEEETTTEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEE-GGGTSSTTEEEEEE-SSSTTSHHHHHHHH--SEEEEEB-S
T ss_pred eeecCCCccccCceEEEEEEecCCCCCCceeeeEEEEeeeccccCCcCCCcccccCCCcccHHHHHHHhcCCeEEEECCC
Confidence 99999999999999999999954 5788999999999998888999999999999999999977778999999999
Q ss_pred CCCCCcceEEecc
Q 011042 307 RGTGSSGSLVFGR 319 (495)
Q Consensus 307 ~~~~~~G~L~fGg 319 (495)
......|.|+||+
T Consensus 152 ~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 152 SSPSSSGFLSFGD 164 (164)
T ss_dssp -SSSSEEEEEECS
T ss_pred CCCCCCEEEEeCc
Confidence 3233589999995
No 25
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.96 E-value=1.1e-28 Score=225.20 Aligned_cols=151 Identities=47% Similarity=0.872 Sum_probs=124.7
Q ss_pred EEEEEeeeeEecCeeeccccccccccccCCCcEEEccCCceeeecHHHHHHHHHHHHHhhCCCC--C-CCCccccccccc
Q 011042 340 FYYVGLSGLGVGGMRIPISEDLFRLTQMGDDGVVMDTGTAVTRLPTPAYEAFRDAFVAQTGNLP--R-ASGVSIFDTCYN 416 (495)
Q Consensus 340 ~y~v~l~gisvgg~~l~i~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~~~~l~~~~~~~~~~~~--~-~~~~~~~~~C~~ 416 (495)
+|+|+|++|+||+++++++++.|++ .++.+++||||||++|+||+++|++|++++.+++.... + ......++.||+
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~-~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy~ 79 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQL-SDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCYN 79 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCE-TTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EEE
T ss_pred CccEEEEEEEECCEEecCChHHhhc-cCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCceee
Confidence 5999999999999999999999988 77889999999999999999999999999999986442 1 234556779999
Q ss_pred ccC----cccccccEEEEEEeCCCEEEeCCCCeEEEecCCCceEEEEEec---CCCceeecHhhhcceEEEEECCCCEEE
Q 011042 417 LSG----FVSVRVPTVSFYFSGGPVLTLPASNFLIPVDDAGTFCFAFAPS---PSGLSIIGNIQQEGIQISFDGANGFVG 489 (495)
Q Consensus 417 ~~~----~~~~~~P~i~f~f~gg~~~~l~~~~y~~~~~~~~~~Cl~~~~~---~~~~~IlG~~fl~~~yvvfD~~~~~IG 489 (495)
.+. .....+|+|+|||.||++++|++++|+++.+ .+.+|++|.++ +.+.+|||+.+|++++++||++++|||
T Consensus 80 ~~~~~~~~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~~-~~~~Cla~~~~~~~~~~~~viG~~~~~~~~v~fDl~~~~ig 158 (161)
T PF14541_consen 80 LSSFGVNRDWAKFPTITLHFEGGADLTLPPENYFVQVS-PGVFCLAFVPSDADDDGVSVIGNFQQQNYHVVFDLENGRIG 158 (161)
T ss_dssp GGCS-EETTEESS--EEEEETTSEEEEE-HHHHEEEEC-TTEEEESEEEETSTTSSSEEE-HHHCCTEEEEEETTTTEEE
T ss_pred ccccccccccccCCeEEEEEeCCcceeeeccceeeecc-CCCEEEEEEccCCCCCCcEEECHHHhcCcEEEEECCCCEEE
Confidence 987 3557899999999999999999999999987 57899999998 567899999999999999999999999
Q ss_pred Eee
Q 011042 490 FGP 492 (495)
Q Consensus 490 Fa~ 492 (495)
|+|
T Consensus 159 F~~ 161 (161)
T PF14541_consen 159 FAP 161 (161)
T ss_dssp EEE
T ss_pred EeC
Confidence 986
No 26
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.91 E-value=8.8e-24 Score=179.81 Aligned_cols=105 Identities=33% Similarity=0.710 Sum_probs=95.8
Q ss_pred EEEeeCCCCceeeEEEecCCCceeEecCCCCCcccCCCCcc-CCCCCCccccccCCChhcccccCCCCCCCCceeeeeeC
Q 011042 158 VRIGVGSPPRSQYMVIDSGSDIVWVQCQPCSQCYKQSDPVF-DPADSASFSGVSCSSAVCDRLENAGCHAGRCRYEVSYG 236 (495)
Q Consensus 158 ~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~C~~C~~~~~~~f-dps~SsT~~~~~C~~~~C~~~~~~~C~~~~~~~~~~Yg 236 (495)
++|.||||+|++.|+|||||+++||+|.+|..|.++.++.| +|++|++++.. .|.|.+.|+
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~~~~~~~~~~~~~~~~sst~~~~------------------~~~~~~~Y~ 62 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQSLAIYSHSSYDDPSASSTYSDN------------------GCTFSITYG 62 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCCCcccccccccCCcCCCCCCCCC------------------CcEEEEEeC
Confidence 47999999999999999999999999999998887777777 99999999875 599999999
Q ss_pred CCCeEEEEEEEEEEEECCEEeeeeEEEEEEecCCCC---CCcceEEee
Q 011042 237 DGSYTKGTLALETLTIGRTVVKNVAIGCGHKNQGMF---VGAAGLLGL 281 (495)
Q Consensus 237 dGs~~~G~~~~Dtvt~g~~~~~~~~fG~~~~~~g~f---~~~~GIlGL 281 (495)
+|+. .|.+++|+|+|++..++++.|||++...+.+ ...+|||||
T Consensus 63 ~g~~-~g~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 63 TGSL-SGGLSTDTVSIGDIEVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred CCeE-EEEEEEEEEEECCEEECCEEEEEEEecCCccccccccccccCC
Confidence 9976 7999999999999999999999999997764 578999998
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=98.11 E-value=1.1e-05 Score=66.11 Aligned_cols=94 Identities=18% Similarity=0.290 Sum_probs=69.5
Q ss_pred ceEEEEEeeCCCCceeeEEEecCCCceeEecCCCCCcccCCCCccCCCCCCccccccCCChhcccccCCCCCCCCceeee
Q 011042 154 GEYFVRIGVGSPPRSQYMVIDSGSDIVWVQCQPCSQCYKQSDPVFDPADSASFSGVSCSSAVCDRLENAGCHAGRCRYEV 233 (495)
Q Consensus 154 ~~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~~C~~~~~~~~~ 233 (495)
+.|++++.|+ .+++.+++|||++.+|+.......+.. .. . ....+.+
T Consensus 1 ~~~~v~v~i~--~~~~~~llDTGa~~s~i~~~~~~~l~~------------~~--~-----------------~~~~~~~ 47 (96)
T cd05483 1 GHFVVPVTIN--GQPVRFLLDTGASTTVISEELAERLGL------------PL--T-----------------LGGKVTV 47 (96)
T ss_pred CcEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHHHcCC------------Cc--c-----------------CCCcEEE
Confidence 3589999999 899999999999999996542222210 00 0 1245667
Q ss_pred eeCCCCeEEEEEEEEEEEECCEEeeeeEEEEEEecCCCCCCcceEEeeCC
Q 011042 234 SYGDGSYTKGTLALETLTIGRTVVKNVAIGCGHKNQGMFVGAAGLLGLGG 283 (495)
Q Consensus 234 ~YgdGs~~~G~~~~Dtvt~g~~~~~~~~fG~~~~~~g~f~~~~GIlGLg~ 283 (495)
...+|.........+.+++|+..++++.+........ ..+||||+.+
T Consensus 48 ~~~~G~~~~~~~~~~~i~ig~~~~~~~~~~v~d~~~~---~~~gIlG~d~ 94 (96)
T cd05483 48 QTANGRVRAARVRLDSLQIGGITLRNVPAVVLPGDAL---GVDGLLGMDF 94 (96)
T ss_pred EecCCCccceEEEcceEEECCcEEeccEEEEeCCccc---CCceEeChHH
Confidence 7788887666777899999999999998887766542 5899999863
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=96.78 E-value=0.01 Score=51.31 Aligned_cols=96 Identities=21% Similarity=0.302 Sum_probs=64.3
Q ss_pred CcceEEEEEeeCCCCceeeEEEecCCCceeEecCCCCCcccCCCCccCCCCCCccccccCCChhcccccCCCCCCCCcee
Q 011042 152 GSGEYFVRIGVGSPPRSQYMVIDSGSDIVWVQCQPCSQCYKQSDPVFDPADSASFSGVSCSSAVCDRLENAGCHAGRCRY 231 (495)
Q Consensus 152 ~~~~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~~C~~~~~~~ 231 (495)
.+|.|++++.|. ++++.+++|||++.+-+...--.... .++.. .....
T Consensus 8 ~~g~~~v~~~In--G~~~~flVDTGAs~t~is~~~A~~Lg------l~~~~------------------------~~~~~ 55 (121)
T TIGR02281 8 GDGHFYATGRVN--GRNVRFLVDTGATSVALNEEDAQRLG------LDLNR------------------------LGYTV 55 (121)
T ss_pred CCCeEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHHHcC------CCccc------------------------CCceE
Confidence 468999999998 88999999999999887543211110 11100 01123
Q ss_pred eeeeCCCCeEEEEEEEEEEEECCEEeeeeEEEEEEecCCCCCCcceEEeeCC
Q 011042 232 EVSYGDGSYTKGTLALETLTIGRTVVKNVAIGCGHKNQGMFVGAAGLLGLGG 283 (495)
Q Consensus 232 ~~~YgdGs~~~G~~~~Dtvt~g~~~~~~~~fG~~~~~~g~f~~~~GIlGLg~ 283 (495)
.+.=..|......+.-|.+++|+..+.|+++.+..... ..+||||+.+
T Consensus 56 ~~~ta~G~~~~~~~~l~~l~iG~~~~~nv~~~v~~~~~----~~~~LLGm~f 103 (121)
T TIGR02281 56 TVSTANGQIKAARVTLDRVAIGGIVVNDVDAMVAEGGA----LSESLLGMSF 103 (121)
T ss_pred EEEeCCCcEEEEEEEeCEEEECCEEEeCcEEEEeCCCc----CCceEcCHHH
Confidence 33344566545556889999999999999988765332 2479999864
No 29
>PF13650 Asp_protease_2: Aspartyl protease
Probab=96.50 E-value=0.026 Score=45.15 Aligned_cols=89 Identities=24% Similarity=0.279 Sum_probs=56.9
Q ss_pred EEEeeCCCCceeeEEEecCCCceeEecCCCCCcccCCCCccCCCCCCccccccCCChhcccccCCCCCCCCceeeeeeCC
Q 011042 158 VRIGVGSPPRSQYMVIDSGSDIVWVQCQPCSQCYKQSDPVFDPADSASFSGVSCSSAVCDRLENAGCHAGRCRYEVSYGD 237 (495)
Q Consensus 158 ~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~~C~~~~~~~~~~Ygd 237 (495)
+++.|+ .+++.+++|||++.+.+.-.-+.... ..+.. ......+.-.+
T Consensus 1 V~v~vn--g~~~~~liDTGa~~~~i~~~~~~~l~------~~~~~------------------------~~~~~~~~~~~ 48 (90)
T PF13650_consen 1 VPVKVN--GKPVRFLIDTGASISVISRSLAKKLG------LKPRP------------------------KSVPISVSGAG 48 (90)
T ss_pred CEEEEC--CEEEEEEEcCCCCcEEECHHHHHHcC------CCCcC------------------------CceeEEEEeCC
Confidence 467787 78999999999998877543221110 00000 01123344445
Q ss_pred CCeEEEEEEEEEEEECCEEeeeeEEEEEEecCCCCCCcceEEeeC
Q 011042 238 GSYTKGTLALETLTIGRTVVKNVAIGCGHKNQGMFVGAAGLLGLG 282 (495)
Q Consensus 238 Gs~~~G~~~~Dtvt~g~~~~~~~~fG~~~~~~g~f~~~~GIlGLg 282 (495)
|.........+.+++|+..+.++.|-..... ...+||||+-
T Consensus 49 g~~~~~~~~~~~i~ig~~~~~~~~~~v~~~~----~~~~~iLG~d 89 (90)
T PF13650_consen 49 GSVTVYRGRVDSITIGGITLKNVPFLVVDLG----DPIDGILGMD 89 (90)
T ss_pred CCEEEEEEEEEEEEECCEEEEeEEEEEECCC----CCCEEEeCCc
Confidence 5555566677789999999988888776622 3678999974
No 30
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=95.54 E-value=0.047 Score=47.30 Aligned_cols=33 Identities=12% Similarity=-0.039 Sum_probs=25.9
Q ss_pred EEEecCCCceeecHhhhcceEEEEECCCCEEEE
Q 011042 458 AFAPSPSGLSIIGNIQQEGIQISFDGANGFVGF 490 (495)
Q Consensus 458 ~~~~~~~~~~IlG~~fl~~~yvvfD~~~~~IGF 490 (495)
.+.+.+.-..|||..||+.+-.+.|+.+.+|.|
T Consensus 92 ~Vl~~~~~d~ILG~d~L~~~~~~ID~~~~~i~~ 124 (124)
T cd05479 92 TVLEDDDVDFLIGLDMLKRHQCVIDLKENVLRI 124 (124)
T ss_pred EEECCCCcCEEecHHHHHhCCeEEECCCCEEEC
Confidence 333433345899999999999999999998864
No 31
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=94.23 E-value=0.43 Score=41.23 Aligned_cols=92 Identities=14% Similarity=0.233 Sum_probs=59.5
Q ss_pred cceEEEEEeeCCCCceeeEEEecCCCceeEecCCCCCcccCCCCccCCCCCCccccccCCChhcccccCCCCCCCCceee
Q 011042 153 SGEYFVRIGVGSPPRSQYMVIDSGSDIVWVQCQPCSQCYKQSDPVFDPADSASFSGVSCSSAVCDRLENAGCHAGRCRYE 232 (495)
Q Consensus 153 ~~~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~~C~~~~~~~~ 232 (495)
...+++++.|+ ++++.+++|||++.+++.-.-+..+.-+. .. ...+.
T Consensus 14 ~~~~~v~~~In--g~~~~~LvDTGAs~s~Is~~~a~~lgl~~------~~-------------------------~~~~~ 60 (124)
T cd05479 14 VPMLYINVEIN--GVPVKAFVDSGAQMTIMSKACAEKCGLMR------LI-------------------------DKRFQ 60 (124)
T ss_pred eeEEEEEEEEC--CEEEEEEEeCCCceEEeCHHHHHHcCCcc------cc-------------------------CcceE
Confidence 35688999999 89999999999999998554333322100 00 01122
Q ss_pred -eeeC-CCCeEEEEEEEEEEEECCEEeeeeEEEEEEecCCCCCCcceEEeeCC
Q 011042 233 -VSYG-DGSYTKGTLALETLTIGRTVVKNVAIGCGHKNQGMFVGAAGLLGLGG 283 (495)
Q Consensus 233 -~~Yg-dGs~~~G~~~~Dtvt~g~~~~~~~~fG~~~~~~g~f~~~~GIlGLg~ 283 (495)
...+ ++....|....+.+.+++..++ +.|.+.... ..++|||+-+
T Consensus 61 ~~~~g~g~~~~~g~~~~~~l~i~~~~~~-~~~~Vl~~~-----~~d~ILG~d~ 107 (124)
T cd05479 61 GIAKGVGTQKILGRIHLAQVKIGNLFLP-CSFTVLEDD-----DVDFLIGLDM 107 (124)
T ss_pred EEEecCCCcEEEeEEEEEEEEECCEEee-eEEEEECCC-----CcCEEecHHH
Confidence 2233 2334467777788999998765 666655322 5799999864
No 32
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=92.74 E-value=2.5 Score=36.34 Aligned_cols=37 Identities=19% Similarity=0.342 Sum_probs=29.2
Q ss_pred CCeEEEEEeeeeEecCeeeccccccccccccCCCcEEEccCCceeeecHHHHHHH
Q 011042 337 APSFYYVGLSGLGVGGMRIPISEDLFRLTQMGDDGVVMDTGTAVTRLPTPAYEAF 391 (495)
Q Consensus 337 ~~~~y~v~l~gisvgg~~l~i~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~~~~l 391 (495)
..++|++. +.|||+.+. ++||||.+.+.++++..++|
T Consensus 8 ~~g~~~v~---~~InG~~~~---------------flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 8 GDGHFYAT---GRVNGRNVR---------------FLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CCCeEEEE---EEECCEEEE---------------EEEECCCCcEEcCHHHHHHc
Confidence 46677665 578888542 99999999999999888665
No 33
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=91.29 E-value=11 Score=38.67 Aligned_cols=105 Identities=20% Similarity=0.341 Sum_probs=60.3
Q ss_pred EEEEEeeCCCC----cee-eEEEecCCCceeEecCCCCCcccCCCCccCCCCCCccccccCCChhcccccCCCCCCCCce
Q 011042 156 YFVRIGVGSPP----RSQ-YMVIDSGSDIVWVQCQPCSQCYKQSDPVFDPADSASFSGVSCSSAVCDRLENAGCHAGRCR 230 (495)
Q Consensus 156 Y~~~i~iGTP~----q~~-~l~~DTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~~C~~~~~~ 230 (495)
=++.|+|=-|. |.+ +|++||||.-+=|....-..-. .+.. |..+..-..+ .+|
T Consensus 24 p~VsVtVC~PGts~CqTIdnvlVDTGS~GLRi~~sAl~~~l---~~~L-p~~t~~g~~l-----------------aEC- 81 (370)
T PF11925_consen 24 PTVSVTVCAPGTSNCQTIDNVLVDTGSYGLRIFASALPSSL---AGSL-PQQTGGGAPL-----------------AEC- 81 (370)
T ss_pred eeeEEEEeCCCCCCceeeCcEEEeccchhhhHHHhhhchhh---hccC-CcccCCCcch-----------------hhh-
Confidence 45777775553 455 8999999998777554210000 0001 1111111111 122
Q ss_pred eeeeeCCCCeEEEEEEEEEEEECCEEeeeeEEEEEEec-----------CCC------CCCcceEEeeCCCC
Q 011042 231 YEVSYGDGSYTKGTLALETLTIGRTVVKNVAIGCGHKN-----------QGM------FVGAAGLLGLGGGS 285 (495)
Q Consensus 231 ~~~~YgdGs~~~G~~~~Dtvt~g~~~~~~~~fG~~~~~-----------~g~------f~~~~GIlGLg~~~ 285 (495)
..|++|.. -|-+.+-+|++++..-.++++-+..+. .+. ..++.||||+|.-+
T Consensus 82 --~~F~sgyt-WGsVr~AdV~igge~A~~iPiQvI~D~~~~~~P~sC~~~g~~~~t~~~lgaNGILGIg~~~ 150 (370)
T PF11925_consen 82 --AQFASGYT-WGSVRTADVTIGGETASSIPIQVIGDSAAPSVPSSCSNSGASMNTVADLGANGILGIGPFP 150 (370)
T ss_pred --hhccCccc-ccceEEEEEEEcCeeccccCEEEEcCCCCCCCCchhhcCCCCCCCcccccCceEEeecCCc
Confidence 24666554 689999999999887666666666442 111 15689999998744
No 34
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=90.92 E-value=0.59 Score=41.11 Aligned_cols=28 Identities=21% Similarity=0.045 Sum_probs=25.6
Q ss_pred ceeecHhhhcceEEEEECCCCEEEEeeC
Q 011042 466 LSIIGNIQQEGIQISFDGANGFVGFGPN 493 (495)
Q Consensus 466 ~~IlG~~fl~~~yvvfD~~~~~IGFa~~ 493 (495)
..|||..+|+.+...-|+.+++|-|...
T Consensus 105 DvILGm~WL~~~~~~IDw~~k~v~f~~p 132 (135)
T PF08284_consen 105 DVILGMDWLKKHNPVIDWATKTVTFNSP 132 (135)
T ss_pred eeEeccchHHhCCCEEEccCCEEEEeCC
Confidence 4899999999999999999999999753
No 35
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=89.92 E-value=0.31 Score=39.51 Aligned_cols=29 Identities=21% Similarity=0.229 Sum_probs=25.4
Q ss_pred EEEEEeeCCCCceeeEEEecCCCceeEecCC
Q 011042 156 YFVRIGVGSPPRSQYMVIDSGSDIVWVQCQP 186 (495)
Q Consensus 156 Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~ 186 (495)
|++++.|+ ++++.+++||||+.+++.-+.
T Consensus 1 ~~~~~~In--g~~i~~lvDTGA~~svis~~~ 29 (91)
T cd05484 1 KTVTLLVN--GKPLKFQLDTGSAITVISEKT 29 (91)
T ss_pred CEEEEEEC--CEEEEEEEcCCcceEEeCHHH
Confidence 57899999 899999999999999996543
No 36
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=89.31 E-value=1.8 Score=36.36 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=20.8
Q ss_pred CceeecHhhhcceEEEEECCCCEE
Q 011042 465 GLSIIGNIQQEGIQISFDGANGFV 488 (495)
Q Consensus 465 ~~~IlG~~fl~~~yvvfD~~~~~I 488 (495)
+..+||..||+.+-++.|+.++++
T Consensus 84 ~~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 84 DEPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred CccEecHHHHhhCCEEEehhhCcC
Confidence 358999999999999999988753
No 37
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=87.97 E-value=4 Score=32.60 Aligned_cols=26 Identities=15% Similarity=0.203 Sum_probs=21.3
Q ss_pred EEeeCCCCceeeEEEecCCCceeEecCC
Q 011042 159 RIGVGSPPRSQYMVIDSGSDIVWVQCQP 186 (495)
Q Consensus 159 ~i~iGTP~q~~~l~~DTGS~~~Wv~~~~ 186 (495)
.+.|. ++++.+++|||++.+-+....
T Consensus 2 ~v~In--G~~~~fLvDTGA~~tii~~~~ 27 (86)
T cd06095 2 TITVE--GVPIVFLVDTGATHSVLKSDL 27 (86)
T ss_pred EEEEC--CEEEEEEEECCCCeEEECHHH
Confidence 45666 799999999999999996543
No 38
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=86.32 E-value=1.1 Score=34.74 Aligned_cols=35 Identities=14% Similarity=0.325 Sum_probs=30.0
Q ss_pred CcceEEEEEeeCCCCceeeEEEecCCCceeEecCCCC
Q 011042 152 GSGEYFVRIGVGSPPRSQYMVIDSGSDIVWVQCQPCS 188 (495)
Q Consensus 152 ~~~~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~C~ 188 (495)
..+.+++.+.|| ++.+.+++|||++...|....+.
T Consensus 5 ~~g~~~v~~~I~--g~~~~alvDtGat~~fis~~~a~ 39 (72)
T PF13975_consen 5 DPGLMYVPVSIG--GVQVKALVDTGATHNFISESLAK 39 (72)
T ss_pred cCCEEEEEEEEC--CEEEEEEEeCCCcceecCHHHHH
Confidence 457899999999 79999999999999998766543
No 39
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=82.66 E-value=9.4 Score=35.79 Aligned_cols=84 Identities=19% Similarity=0.211 Sum_probs=59.4
Q ss_pred CCcceEEEEEeeCCCCceeeEEEecCCCceeEecCCCCCcccCCCCccCCCCCCccccccCCChhcccccCCCCCCCCce
Q 011042 151 QGSGEYFVRIGVGSPPRSQYMVIDSGSDIVWVQCQPCSQCYKQSDPVFDPADSASFSGVSCSSAVCDRLENAGCHAGRCR 230 (495)
Q Consensus 151 ~~~~~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~~C~~~~~~ 230 (495)
..+|.|.++..|- +|++..++|||-+.+-+...... .--||.+. .+.+
T Consensus 101 ~~~GHF~a~~~VN--Gk~v~fLVDTGATsVal~~~dA~------RlGid~~~------------------------l~y~ 148 (215)
T COG3577 101 SRDGHFEANGRVN--GKKVDFLVDTGATSVALNEEDAR------RLGIDLNS------------------------LDYT 148 (215)
T ss_pred cCCCcEEEEEEEC--CEEEEEEEecCcceeecCHHHHH------HhCCCccc------------------------cCCc
Confidence 4679999999999 99999999999988877544311 11233321 1345
Q ss_pred eeeeeCCCCeEEEEEEEEEEEECCEEeeeeEEEEEE
Q 011042 231 YEVSYGDGSYTKGTLALETLTIGRTVVKNVAIGCGH 266 (495)
Q Consensus 231 ~~~~YgdGs~~~G~~~~Dtvt~g~~~~~~~~fG~~~ 266 (495)
+.+.-.+|....-.+-.|.|.||+..++++.=-++.
T Consensus 149 ~~v~TANG~~~AA~V~Ld~v~IG~I~~~nV~A~V~~ 184 (215)
T COG3577 149 ITVSTANGRARAAPVTLDRVQIGGIRVKNVDAMVAE 184 (215)
T ss_pred eEEEccCCccccceEEeeeEEEccEEEcCchhheec
Confidence 566667888755667789999999888876544443
No 40
>PF13650 Asp_protease_2: Aspartyl protease
Probab=81.79 E-value=1.8 Score=34.17 Aligned_cols=20 Identities=15% Similarity=0.423 Sum_probs=18.4
Q ss_pred EEEccCCceeeecHHHHHHH
Q 011042 372 VVMDTGTAVTRLPTPAYEAF 391 (495)
Q Consensus 372 ~iiDSGTt~t~lp~~~~~~l 391 (495)
++||||.+.+.+.+++++++
T Consensus 12 ~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 12 FLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEEcCCCCcEEECHHHHHHc
Confidence 99999999999999888776
No 41
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=80.51 E-value=2 Score=35.17 Aligned_cols=28 Identities=11% Similarity=0.413 Sum_probs=23.8
Q ss_pred EEEEeeCCCCceeeEEEecCCCceeEecCC
Q 011042 157 FVRIGVGSPPRSQYMVIDSGSDIVWVQCQP 186 (495)
Q Consensus 157 ~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~ 186 (495)
+.+|.|. .+++.+++||||+.+-++...
T Consensus 7 ~i~v~i~--g~~i~~LlDTGA~vsiI~~~~ 34 (100)
T PF00077_consen 7 YITVKIN--GKKIKALLDTGADVSIISEKD 34 (100)
T ss_dssp EEEEEET--TEEEEEEEETTBSSEEESSGG
T ss_pred eEEEeEC--CEEEEEEEecCCCcceecccc
Confidence 4778888 789999999999999996543
No 42
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=78.55 E-value=18 Score=32.78 Aligned_cols=20 Identities=20% Similarity=0.429 Sum_probs=17.7
Q ss_pred EEEccCCceeeecHHHHHHH
Q 011042 372 VVMDTGTAVTRLPTPAYEAF 391 (495)
Q Consensus 372 ~iiDSGTt~t~lp~~~~~~l 391 (495)
+++|||++...+-.+..+.|
T Consensus 48 vLfDSGSPTSfIr~di~~kL 67 (177)
T PF12384_consen 48 VLFDSGSPTSFIRSDIVEKL 67 (177)
T ss_pred EEEeCCCccceeehhhHHhh
Confidence 99999999999988887776
No 43
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=77.56 E-value=3.3 Score=33.34 Aligned_cols=30 Identities=27% Similarity=0.453 Sum_probs=25.6
Q ss_pred eeEecCeeeccccccccccccCCCcEEEccCCceeeecHHHHHHH
Q 011042 347 GLGVGGMRIPISEDLFRLTQMGDDGVVMDTGTAVTRLPTPAYEAF 391 (495)
Q Consensus 347 gisvgg~~l~i~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~~~~l 391 (495)
.+.|||+.+. +.+|||++.+.++++.+..+
T Consensus 4 ~~~Ing~~i~---------------~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 4 TLLVNGKPLK---------------FQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEEECCEEEE---------------EEEcCCcceEEeCHHHHHHh
Confidence 3678888764 89999999999999988766
No 44
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=72.49 E-value=5.3 Score=30.80 Aligned_cols=29 Identities=17% Similarity=0.468 Sum_probs=24.7
Q ss_pred eEecCeeeccccccccccccCCCcEEEccCCceeeecHHHHHHH
Q 011042 348 LGVGGMRIPISEDLFRLTQMGDDGVVMDTGTAVTRLPTPAYEAF 391 (495)
Q Consensus 348 isvgg~~l~i~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~~~~l 391 (495)
+.|+|+.+. +++|||.+...++.+..+.|
T Consensus 13 ~~I~g~~~~---------------alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 13 VSIGGVQVK---------------ALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEECCEEEE---------------EEEeCCCcceecCHHHHHHh
Confidence 567887653 99999999999999988877
No 45
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=71.90 E-value=6.2 Score=31.43 Aligned_cols=20 Identities=25% Similarity=0.416 Sum_probs=17.8
Q ss_pred EEEccCCceeeecHHHHHHH
Q 011042 372 VVMDTGTAVTRLPTPAYEAF 391 (495)
Q Consensus 372 ~iiDSGTt~t~lp~~~~~~l 391 (495)
+++|||++.+.++.+..+.+
T Consensus 16 ~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 16 FLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEEECCCCcEEcCHHHHHHc
Confidence 99999999999999877665
No 46
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=69.87 E-value=7.7 Score=33.57 Aligned_cols=30 Identities=20% Similarity=0.339 Sum_probs=23.6
Q ss_pred eeEecCeeeccccccccccccCCCcEEEccCCceeeecHHHHHHH
Q 011042 347 GLGVGGMRIPISEDLFRLTQMGDDGVVMDTGTAVTRLPTPAYEAF 391 (495)
Q Consensus 347 gisvgg~~l~i~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~~~~l 391 (495)
.+.+||+.+. +.||||+-.+.++.+..+++
T Consensus 28 ~~~ing~~vk---------------A~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 28 NCKINGVPVK---------------AFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEEETTEEEE---------------EEEETT-SS-EEEHHHHHHT
T ss_pred EEEECCEEEE---------------EEEeCCCCccccCHHHHHHc
Confidence 3678998774 99999999999999888774
No 47
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=67.52 E-value=5.5 Score=32.21 Aligned_cols=25 Identities=12% Similarity=0.220 Sum_probs=21.2
Q ss_pred EEeeCCCCceeeEEEecCCCceeEecC
Q 011042 159 RIGVGSPPRSQYMVIDSGSDIVWVQCQ 185 (495)
Q Consensus 159 ~i~iGTP~q~~~l~~DTGS~~~Wv~~~ 185 (495)
.+.|+ .|.+.+++|||.+++-+.-.
T Consensus 2 ~~~i~--g~~~~~llDTGAd~Tvi~~~ 26 (87)
T cd05482 2 TLYIN--GKLFEGLLDTGADVSIIAEN 26 (87)
T ss_pred EEEEC--CEEEEEEEccCCCCeEEccc
Confidence 46677 89999999999999998643
No 48
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=65.17 E-value=8.4 Score=30.73 Aligned_cols=29 Identities=24% Similarity=0.292 Sum_probs=24.1
Q ss_pred eEecCeeeccccccccccccCCCcEEEccCCceeeecHHHHHHH
Q 011042 348 LGVGGMRIPISEDLFRLTQMGDDGVVMDTGTAVTRLPTPAYEAF 391 (495)
Q Consensus 348 isvgg~~l~i~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~~~~l 391 (495)
+.|||+.+. +++|||.+.+.++++..+.+
T Consensus 3 v~InG~~~~---------------fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPIV---------------FLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEEE---------------EEEECCCCeEEECHHHhhhc
Confidence 567777653 89999999999999888775
No 49
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=55.25 E-value=9 Score=31.18 Aligned_cols=16 Identities=25% Similarity=0.491 Sum_probs=14.3
Q ss_pred EEEccCCceeeecHHH
Q 011042 372 VVMDTGTAVTRLPTPA 387 (495)
Q Consensus 372 ~iiDSGTt~t~lp~~~ 387 (495)
++||||...+.++.+.
T Consensus 19 ~LlDTGA~vsiI~~~~ 34 (100)
T PF00077_consen 19 ALLDTGADVSIISEKD 34 (100)
T ss_dssp EEEETTBSSEEESSGG
T ss_pred EEEecCCCcceecccc
Confidence 9999999999999653
No 50
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=53.06 E-value=27 Score=32.84 Aligned_cols=38 Identities=16% Similarity=0.257 Sum_probs=29.9
Q ss_pred CCCeEEEEEeeeeEecCeeeccccccccccccCCCcEEEccCCceeeecHHHHHHH
Q 011042 336 RAPSFYYVGLSGLGVGGMRIPISEDLFRLTQMGDDGVVMDTGTAVTRLPTPAYEAF 391 (495)
Q Consensus 336 ~~~~~y~v~l~gisvgg~~l~i~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~~~~l 391 (495)
..+++|.++ ..|||+.+. .++|||.|.+.++++....+
T Consensus 101 ~~~GHF~a~---~~VNGk~v~---------------fLVDTGATsVal~~~dA~Rl 138 (215)
T COG3577 101 SRDGHFEAN---GRVNGKKVD---------------FLVDTGATSVALNEEDARRL 138 (215)
T ss_pred cCCCcEEEE---EEECCEEEE---------------EEEecCcceeecCHHHHHHh
Confidence 356667654 689999875 89999999999998776554
No 51
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=46.29 E-value=24 Score=28.75 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=18.7
Q ss_pred EEEccCCceeeecHHHHHHHH
Q 011042 372 VVMDTGTAVTRLPTPAYEAFR 392 (495)
Q Consensus 372 ~iiDSGTt~t~lp~~~~~~l~ 392 (495)
+.+|||.+...+|...|..+-
T Consensus 13 ~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 13 FQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred EEEecCCEEEeccHHHHhhhc
Confidence 899999999999998887763
No 52
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=45.29 E-value=1.2e+02 Score=24.66 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=17.1
Q ss_pred CCcEEEccCCceeeecHHHHH
Q 011042 369 DDGVVMDTGTAVTRLPTPAYE 389 (495)
Q Consensus 369 ~~~~iiDSGTt~t~lp~~~~~ 389 (495)
+-..+||||..+..+|.+..+
T Consensus 9 ~~~fLVDTGA~vSviP~~~~~ 29 (89)
T cd06094 9 GLRFLVDTGAAVSVLPASSTK 29 (89)
T ss_pred CcEEEEeCCCceEeecccccc
Confidence 556999999999999975543
No 53
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=40.39 E-value=19 Score=29.55 Aligned_cols=18 Identities=50% Similarity=0.512 Sum_probs=9.3
Q ss_pred CCccchhhhHHHHHHHHHH
Q 011042 1 MAFSQTTLLLKQVLLLHLL 19 (495)
Q Consensus 1 ~~~~~~~~~l~~~~~~~~~ 19 (495)
|+ |-..|||-++|.++||
T Consensus 1 Ma-SK~~llL~l~LA~lLl 18 (95)
T PF07172_consen 1 MA-SKAFLLLGLLLAALLL 18 (95)
T ss_pred Cc-hhHHHHHHHHHHHHHH
Confidence 66 5555555555444444
No 54
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=36.34 E-value=40 Score=30.57 Aligned_cols=29 Identities=14% Similarity=0.242 Sum_probs=23.0
Q ss_pred EEEEeeCCCCceeeEEEecCCCceeEecC
Q 011042 157 FVRIGVGSPPRSQYMVIDSGSDIVWVQCQ 185 (495)
Q Consensus 157 ~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~ 185 (495)
...+.++.-..+++++|||||....+...
T Consensus 34 T~~v~l~~~~t~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 34 TAIVQLNCKGTPIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred EEEEEEeecCcEEEEEEeCCCccceeehh
Confidence 45566666699999999999999888543
No 55
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=34.40 E-value=2.9e+02 Score=28.37 Aligned_cols=38 Identities=16% Similarity=0.128 Sum_probs=31.0
Q ss_pred eE-EEEEecCCCceeecHhhhcceEEEEECCCCEEEEee
Q 011042 455 FC-FAFAPSPSGLSIIGNIQQEGIQISFDGANGFVGFGP 492 (495)
Q Consensus 455 ~C-l~~~~~~~~~~IlG~~fl~~~yvvfD~~~~~IGFa~ 492 (495)
.| +.+....+-...||.-.||.+--.-|++++++-|+.
T Consensus 307 ~c~ftV~d~~~~d~llGLd~Lrr~~ccIdL~~~~L~ig~ 345 (380)
T KOG0012|consen 307 PCSFTVLDRRDMDLLLGLDMLRRHQCCIDLKTNVLRIGN 345 (380)
T ss_pred ccceEEecCCCcchhhhHHHHHhccceeecccCeEEecC
Confidence 47 567765444589999999999999999999988764
No 56
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=33.72 E-value=31 Score=29.70 Aligned_cols=20 Identities=30% Similarity=0.414 Sum_probs=18.2
Q ss_pred EEEccCCc-eeeecHHHHHHH
Q 011042 372 VVMDTGTA-VTRLPTPAYEAF 391 (495)
Q Consensus 372 ~iiDSGTt-~t~lp~~~~~~l 391 (495)
.+||||-+ ++.+|+++++++
T Consensus 29 ~LiDTGFtg~lvlp~~vaek~ 49 (125)
T COG5550 29 ELIDTGFTGYLVLPPQVAEKL 49 (125)
T ss_pred eEEecCCceeEEeCHHHHHhc
Confidence 58999999 999999999886
No 57
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=30.13 E-value=71 Score=27.63 Aligned_cols=35 Identities=9% Similarity=0.239 Sum_probs=24.5
Q ss_pred ceEEEEEeeCCCCceeeEEEecCCCceeEecCCCCCc
Q 011042 154 GEYFVRIGVGSPPRSQYMVIDSGSDIVWVQCQPCSQC 190 (495)
Q Consensus 154 ~~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~C~~C 190 (495)
..+|+++.|+ .+++.+++|||...+-+.-+-+..|
T Consensus 23 ~mLyI~~~in--g~~vkA~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 23 SMLYINCKIN--GVPVKAFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp ---EEEEEET--TEEEEEEEETT-SS-EEEHHHHHHT
T ss_pred ceEEEEEEEC--CEEEEEEEeCCCCccccCHHHHHHc
Confidence 4578999999 9999999999999888754433445
No 58
>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain an aspartic peptidase signature that belongs to MEROPS peptidase family A3, subfamily A3A (cauliflower mosaic virus-type endopeptidase, clan AA). Cauliflower mosaic virus belongs to the Retro-transcribing viruses, which have a double-stranded DNA genome. The genome includes an open reading frame (ORF V) that shows similarities to the pol gene of retroviruses. This ORF codes for a polyprotein that includes a reverse transcriptase, which, on the basis of a DTG triplet near the N terminus, was suggested to include an aspartic protease. The presence of an aspartic protease has been confirmed by mutational studies, implicating Asp-45 in catalysis. The protease releases itself from the polyprotein and is involved in reactions required to process the ORF IV polyprotein, which includes the viral coat protein []. The viral aspartic peptidase signature has also been found associated with a polyprotein encoded by integrated pararetrovirus-like sequences in the genome of Nicotiana tabacum (Common tobacco) []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis
Probab=27.47 E-value=1.8e+02 Score=27.36 Aligned_cols=26 Identities=15% Similarity=-0.037 Sum_probs=18.6
Q ss_pred CceeecHhhhcceEEEEECCCCEEEEe
Q 011042 465 GLSIIGNIQQEGIQISFDGANGFVGFG 491 (495)
Q Consensus 465 ~~~IlG~~fl~~~yvvfD~~~~~IGFa 491 (495)
-..|||+.|+|.|+=-...+ .+|-|-
T Consensus 91 ~d~IlG~NF~r~y~Pfiq~~-~~I~f~ 116 (201)
T PF02160_consen 91 IDIILGNNFLRLYEPFIQTE-DRIQFH 116 (201)
T ss_pred CCEEecchHHHhcCCcEEEc-cEEEEE
Confidence 34899999999877555554 356664
No 59
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=26.33 E-value=48 Score=27.10 Aligned_cols=17 Identities=29% Similarity=0.542 Sum_probs=14.8
Q ss_pred EEEccCCceeeecHHHH
Q 011042 372 VVMDTGTAVTRLPTPAY 388 (495)
Q Consensus 372 ~iiDSGTt~t~lp~~~~ 388 (495)
+++|||++.++++..-.
T Consensus 14 ~~~DTGSs~~Wv~~~~c 30 (109)
T cd05470 14 VLLDTGSSNLWVPSVDC 30 (109)
T ss_pred EEEeCCCCCEEEeCCCC
Confidence 99999999999987543
Done!