Query 011042
Match_columns 495
No_of_seqs 343 out of 1796
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 19:35:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011042.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011042hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vla_A EDGP; extracellular, in 100.0 4.7E-64 1.6E-68 523.3 30.2 340 137-493 5-398 (413)
2 3aup_A SBG7S, BG, basic 7S glo 100.0 1.2E-59 4E-64 489.7 31.7 335 139-495 8-394 (403)
3 3psg_A Pepsinogen; hydrolase(a 100.0 1E-57 3.5E-62 469.5 29.1 304 141-494 46-370 (370)
4 1mpp_A Pepsin; hydrolase(acid 100.0 2.2E-57 7.6E-62 465.9 30.4 312 140-495 7-356 (361)
5 2apr_A Rhizopuspepsin; hydrola 100.0 9.9E-57 3.4E-61 454.6 31.8 297 151-494 12-324 (325)
6 1tzs_A Cathepsin E; hydrolase, 100.0 1.2E-56 4E-61 458.8 30.8 308 141-495 13-343 (351)
7 3c9x_A Trichoderma reesei aspa 100.0 1.1E-56 3.9E-61 454.9 29.5 299 151-493 12-329 (329)
8 1dpj_A Proteinase A; proteinas 100.0 2.2E-56 7.5E-61 452.8 29.9 303 142-494 4-329 (329)
9 3cms_A Chymosin B; hydrolase, 100.0 7E-57 2.4E-61 455.3 26.2 300 142-494 5-323 (323)
10 2x0b_A Renin; hydrolase-hormon 100.0 5.4E-57 1.8E-61 465.5 25.7 304 141-494 51-383 (383)
11 1am5_A Pepsin, acid proteinase 100.0 9E-57 3.1E-61 454.7 26.8 301 142-494 3-324 (324)
12 1oew_A Endothiapepsin; hydrola 100.0 2.5E-56 8.5E-61 452.4 28.5 298 151-493 12-329 (329)
13 4aa9_A Chymosin; hydrolase, as 100.0 1E-56 3.5E-61 453.4 24.7 301 143-494 3-320 (320)
14 1j71_A Candidapepsin, aspartic 100.0 2.6E-56 9E-61 453.2 27.1 299 141-495 3-325 (334)
15 2qzx_A Candidapepsin-5; aspart 100.0 3.3E-56 1.1E-60 453.9 27.7 302 141-495 3-332 (342)
16 1htr_B Gastricsin; aspartyl pr 100.0 2.1E-56 7.1E-61 453.0 26.1 299 151-494 9-329 (329)
17 3fv3_A SAPP1P-secreted asparti 100.0 6.1E-56 2.1E-60 451.3 28.7 300 141-495 3-330 (339)
18 1t6e_X Xylanase inhibitor; two 100.0 1.4E-55 4.8E-60 455.7 29.7 321 141-494 3-373 (381)
19 1miq_A Plasmepsin; aspartic pr 100.0 1.6E-55 5.3E-60 454.0 29.2 301 141-494 52-374 (375)
20 3pvk_A Candidapepsin-2; hydrol 100.0 2.7E-55 9.3E-60 446.9 27.5 301 141-495 3-332 (342)
21 3k1w_A Renin; protease, altern 100.0 1.5E-55 5.2E-60 448.6 25.3 305 140-494 7-340 (341)
22 2bju_A Plasmepsin II; aspartic 100.0 1E-55 3.5E-60 463.7 24.3 301 141-494 128-450 (453)
23 1ibq_A Aspergillopepsin; aspar 100.0 2.1E-54 7.1E-59 437.6 30.0 296 151-494 11-325 (325)
24 3qvc_A Histo-aspartic protease 100.0 2.2E-54 7.5E-59 454.0 27.6 302 140-494 126-449 (451)
25 1qdm_A Prophytepsin; aspartic 100.0 3E-54 1E-58 456.7 28.8 317 141-494 42-478 (478)
26 1yg9_A Aspartic protease BLA G 100.0 1.7E-54 5.9E-59 439.1 25.4 300 141-494 7-329 (330)
27 1izd_A Aspartic proteinase; su 100.0 4.2E-54 1.4E-58 434.9 26.2 293 152-494 13-323 (323)
28 1bxo_A Protein (penicillopepsi 100.0 3.1E-54 1.1E-58 435.9 24.6 294 151-494 12-323 (323)
29 2ewy_A Beta-secretase 2; BACE2 100.0 1.6E-53 5.3E-58 440.6 29.9 308 153-495 12-356 (383)
30 2qp8_A Beta-secretase 1; BACE1 100.0 1.2E-53 4.2E-58 443.2 26.5 309 153-495 20-368 (395)
31 3vf3_A Beta-secretase 1; struc 100.0 1.8E-52 6E-57 435.5 29.4 310 153-495 27-375 (402)
32 1wkr_A Polyporopepsin; hydrola 100.0 3.5E-52 1.2E-56 423.8 29.3 297 141-495 3-334 (340)
33 3lpj_A Beta-secretase 1; alzhe 100.0 2.9E-52 1E-56 440.5 28.5 311 152-495 72-421 (455)
34 1b5f_A Protein (cardosin A); h 100.0 7.4E-42 2.5E-46 330.7 18.9 220 142-397 4-238 (239)
35 1lya_B Cathepsin D; lysosomal 100.0 3.8E-36 1.3E-40 290.9 21.5 218 253-494 1-241 (241)
36 1lya_A Cathepsin D; lysosomal 99.9 8.6E-23 3E-27 168.6 9.7 89 142-254 4-96 (97)
37 1b5f_B Protein (cardosin A); h 99.6 4.1E-16 1.4E-20 126.0 7.1 76 413-494 6-87 (87)
38 2i1a_A DNA damage-inducible pr 93.3 0.13 4.6E-06 44.4 6.1 91 152-282 23-115 (148)
39 2i1a_A DNA damage-inducible pr 93.2 0.25 8.5E-06 42.7 7.7 26 466-491 109-134 (148)
40 3s8i_A Protein DDI1 homolog 1; 91.2 0.24 8.3E-06 43.0 5.1 108 340-492 24-134 (148)
41 3s8i_A Protein DDI1 homolog 1; 85.2 1.6 5.6E-05 37.7 6.3 90 154-282 23-114 (148)
42 1fmb_A EIAV protease; hydrolas 80.6 1.4 4.7E-05 35.8 3.7 25 157-183 10-34 (104)
43 2hs1_A HIV-1 protease; ultra-h 80.0 1.5 5.1E-05 35.2 3.7 27 157-185 10-36 (99)
44 3ec0_A Protease; HIV-2, inhibi 74.1 3.1 0.0001 33.3 4.0 27 157-185 10-36 (99)
45 2hah_A Protease, retropepsin; 69.7 3.5 0.00012 34.0 3.5 25 157-184 16-40 (116)
46 3liy_A Protease; hydrolase, hy 69.1 3.9 0.00014 33.5 3.6 31 157-187 12-45 (116)
47 3sqf_A Protease; folded monome 61.6 7 0.00024 32.0 3.7 28 157-186 11-38 (114)
48 1lya_A Cathepsin D; lysosomal 53.2 14 0.00047 29.1 4.2 15 372-386 30-44 (97)
49 3slz_A GAG-Pro-POL polyprotein 47.9 14 0.00049 31.1 3.6 28 156-185 23-50 (132)
50 2rsp_A RSV protease; hydrolase 46.9 14 0.00047 30.8 3.2 23 162-186 27-49 (124)
51 3ka2_A [L-Ala51;Gly51']HIV-1 p 43.5 17 0.00058 32.9 3.6 26 156-183 9-34 (203)
52 1ibq_A Aspergillopepsin; aspar 39.5 24 0.00083 34.0 4.3 34 337-388 12-45 (325)
53 1bxo_A Protein (penicillopepsi 37.8 22 0.00076 34.3 3.8 34 337-388 13-46 (323)
54 1izd_A Aspartic proteinase; su 35.6 26 0.00088 33.8 3.8 17 372-388 30-46 (323)
55 1mpp_A Pepsin; hydrolase(acid 31.4 50 0.0017 32.2 5.1 45 324-386 5-49 (361)
56 3cms_A Chymosin B; hydrolase, 30.5 52 0.0018 31.6 5.0 45 325-387 2-46 (323)
57 1oew_A Endothiapepsin; hydrola 27.7 51 0.0017 31.7 4.4 16 372-387 32-47 (329)
58 3c9x_A Trichoderma reesei aspa 26.4 55 0.0019 31.5 4.4 17 372-388 32-48 (329)
59 2apr_A Rhizopuspepsin; hydrola 26.0 62 0.0021 31.0 4.7 34 337-386 13-46 (325)
60 3ka2_A [L-Ala51;Gly51']HIV-1 p 25.7 50 0.0017 29.8 3.6 27 156-184 113-139 (203)
61 3aup_A SBG7S, BG, basic 7S glo 25.3 66 0.0023 31.9 4.9 42 328-386 11-52 (403)
62 1b5f_A Protein (cardosin A); h 23.3 67 0.0023 29.3 4.2 15 372-386 30-44 (239)
63 3vla_A EDGP; extracellular, in 20.8 82 0.0028 31.5 4.5 44 325-385 7-50 (413)
64 2qzx_A Candidapepsin-5; aspart 20.5 88 0.003 30.1 4.5 15 372-386 29-43 (342)
65 1wkr_A Polyporopepsin; hydrola 20.2 74 0.0025 30.6 3.9 14 372-385 29-42 (340)
66 3fv3_A SAPP1P-secreted asparti 20.1 81 0.0028 30.3 4.2 15 372-386 29-43 (339)
No 1
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A
Probab=100.00 E-value=4.7e-64 Score=523.32 Aligned_cols=340 Identities=23% Similarity=0.456 Sum_probs=288.8
Q ss_pred ccccceeeeecccCCCcceEEEEEeeCCCCceeeEEEecCCCceeEecCCCCCcccCCCCccCCCCCCccccccCCChhc
Q 011042 137 EVQDFGTDVVSGMDQGSGEYFVRIGVGSPPRSQYMVIDSGSDIVWVQCQPCSQCYKQSDPVFDPADSASFSGVSCSSAVC 216 (495)
Q Consensus 137 ~~~~~~~p~~~~~~~~~~~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C 216 (495)
.++.+..|++.+ ..+++|+++|.||||||++.|+|||||+++||+|.+| .+|+||+.++|.++.|
T Consensus 5 ~~~~~~~pv~~d--~~~~~Y~~~i~iGTPpq~~~v~~DTGS~~lWv~c~~c-------------~~Sst~~~v~C~s~~C 69 (413)
T 3vla_A 5 RPSALVVPVKKD--ASTLQYVTTINQRTPLVSENLVVDLGGRFLWVDCDQN-------------YVSSTYRPVRCRTSQC 69 (413)
T ss_dssp CCSEEEEEEEEC--TTTCCEEEEEEETTTTEEEEEEEETTCSSEEEECSSS-------------CCCTTCEECBTTSHHH
T ss_pred CCccEEEEeeec--CCCCeEEEEEEcCCCCcceEEEEeCCChhhhcccCCC-------------CCCCCcCccCCCcccc
Confidence 355788999886 4789999999999999999999999999999999875 3799999999999999
Q ss_pred ccccCC-----------CCCCCCceeeeeeC-CCCeEEEEEEEEEEEEC---------CEEeeeeEEEEEEec--CCCCC
Q 011042 217 DRLENA-----------GCHAGRCRYEVSYG-DGSYTKGTLALETLTIG---------RTVVKNVAIGCGHKN--QGMFV 273 (495)
Q Consensus 217 ~~~~~~-----------~C~~~~~~~~~~Yg-dGs~~~G~~~~Dtvt~g---------~~~~~~~~fG~~~~~--~g~f~ 273 (495)
...... .|.++.|.|.+.|+ ||+.+.|++++|+|+|+ +..++++.|||++.. .+.+.
T Consensus 70 ~~~~~~~~~~c~s~~~~~c~~~~c~~~i~Y~~d~~~~~G~l~~Dtv~l~~~~g~~~~~~~~v~~~~FGc~~~~~~~g~~~ 149 (413)
T 3vla_A 70 SLSGSIACGDCFNGPRPGCNNNTCGVFPENPVINTATGGEVAEDVVSVESTDGSSSGRVVTVPRFIFSCAPTSLLQNLAS 149 (413)
T ss_dssp HHTTCCEEECCSSCCBTTBCSSEEEECCEETTTTEECCEEEEEEEEEEEEECSSBEEEEEEEEEEEEEEECGGGGTTSCT
T ss_pred cccccCCCcccccCCCCCCCCCcCcceeecCcCCceeeeEEEEEEEEecccCCCCcccceeeCCEEEECcccccccCccc
Confidence 876533 35556799999994 88888999999999996 257899999999986 45557
Q ss_pred CcceEEeeCCCCCCccccccCc--cCCeEEEEeecCCCCCcceEEecccC--------CCCC-ceEEecccCCCC-----
Q 011042 274 GAAGLLGLGGGSMSLVGQLGGQ--TGGAFSYCLVSRGTGSSGSLVFGREA--------LPVG-AAWVPLVRNPRA----- 337 (495)
Q Consensus 274 ~~~GIlGLg~~~~s~~~ql~~~--~~~~FS~cL~~~~~~~~G~L~fGg~~--------~~~~-~~~tpl~~~~~~----- 337 (495)
.++||||||++++|+++|+... .+++|||||.+... ..|.|+||+.+ +.++ ++||||+.++..
T Consensus 150 ~~dGIlGLg~~~lSl~sql~~~~~i~~~FS~cL~~~~~-~~G~l~fGg~~~~~~p~~~~~g~~l~~tPl~~~~~~~~~~~ 228 (413)
T 3vla_A 150 GVVGMAGLGRTRIALPSQFASAFSFKRKFAMCLSGSTS-SNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATS 228 (413)
T ss_dssp TCCEEEECSSSSSSHHHHHHHHHTCCSEEEEECCSCSS-SCEEEEEESCCEEETTTEEECTTTSEEEECBCCSSCCSSSC
T ss_pred ccccccccCCCCcchHHHHhhhcCCCceEEEeCCCCCC-CceEEEECCCcccccccccccCCceeEeecccCCccccccc
Confidence 8999999999999999998752 26999999998533 37999999976 2567 999999876432
Q ss_pred -----CeEEEEEeeeeEecCeeeccccccccccccCCCcEEEccCCceeeecHHHHHHHHHHHHHhhC--CCCCCCCccc
Q 011042 338 -----PSFYYVGLSGLGVGGMRIPISEDLFRLTQMGDDGVVMDTGTAVTRLPTPAYEAFRDAFVAQTG--NLPRASGVSI 410 (495)
Q Consensus 338 -----~~~y~v~l~gisvgg~~l~i~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~~~~l~~~~~~~~~--~~~~~~~~~~ 410 (495)
..||+|+|++|+||++.+.++++.|.++++|++++||||||++|+||+++|++|+++|.+++. +++...+...
T Consensus 229 ~~~~~~~~y~V~l~~IsVgg~~l~~~~~~~~~~~~g~~~aIiDSGTslt~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~ 308 (413)
T 3vla_A 229 TQGEPSVEYFIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITRVASVAP 308 (413)
T ss_dssp CTTCCCCSCEECCCEEEETTEEECCCGGGTSBCTTSCBCEEECSSSSSEEEEHHHHHHHHHHHHHHHHHTTCCEECCCTT
T ss_pred cccCCCceEEEEEEEEEECCEEccCCchhcccccCCCCCEEEECCCCcEEcCHHHHHHHHHHHHHHhcccCCCcCCCCCC
Confidence 279999999999999999999888887777788999999999999999999999999999874 4444444444
Q ss_pred ccccccccCccc----ccccEEEEEEeC-CCEEEeCCCCeEEEecCCCceEEEEEecCC---CceeecHhhhcceEEEEE
Q 011042 411 FDTCYNLSGFVS----VRVPTVSFYFSG-GPVLTLPASNFLIPVDDAGTFCFAFAPSPS---GLSIIGNIQQEGIQISFD 482 (495)
Q Consensus 411 ~~~C~~~~~~~~----~~~P~i~f~f~g-g~~~~l~~~~y~~~~~~~~~~Cl~~~~~~~---~~~IlG~~fl~~~yvvfD 482 (495)
++.||+.++... ..+|+|+|+|+| +++|+|++++|+++.. .+..|++|+..+. +.||||+.|||++|+|||
T Consensus 309 ~~~C~~~~~~~~~~~~~~lP~i~f~f~g~~~~~~l~~~~y~~~~~-~~~~Cl~~~~~~~~~~~~~IlGd~fl~~~~vvfD 387 (413)
T 3vla_A 309 FGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYIN-DNVVCLGVVDGGSNLRTSIVIGGHQLEDNLVQFD 387 (413)
T ss_dssp CSCEEECTTCCEETTEECCCCEEEECSSTTCEEEECHHHHEEEEE-TTEEEECEEEEESSCSSSEEECHHHHTTEEEEEE
T ss_pred CcceeccCCccccccccCCCcEEEEEcCCcEEEEeCccceEEEeC-CCcEEEEEEecCCCcccceeEehhhhcCeEEEEE
Confidence 679999865432 479999999985 4999999999999876 4678999887632 579999999999999999
Q ss_pred CCCCEEEEeeC
Q 011042 483 GANGFVGFGPN 493 (495)
Q Consensus 483 ~~~~~IGFa~~ 493 (495)
++++|||||++
T Consensus 388 ~~~~riGfa~~ 398 (413)
T 3vla_A 388 LATSRVGFSGT 398 (413)
T ss_dssp TTTTEEEEEEE
T ss_pred CCCCEEEEEEe
Confidence 99999999985
No 2
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max}
Probab=100.00 E-value=1.2e-59 Score=489.66 Aligned_cols=335 Identities=22% Similarity=0.380 Sum_probs=267.9
Q ss_pred ccceeeeecccCCCcceEEEEEeeCCCCceeeEEEecCCCceeEecCCCCCcccCCCCccCCCCCCccccccCCChhccc
Q 011042 139 QDFGTDVVSGMDQGSGEYFVRIGVGSPPRSQYMVIDSGSDIVWVQCQPCSQCYKQSDPVFDPADSASFSGVSCSSAVCDR 218 (495)
Q Consensus 139 ~~~~~p~~~~~~~~~~~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~ 218 (495)
..+..|+... ..+++|+++|.||||+|++.|+|||||+++||+|.+| .+|+||+.++|.+..|..
T Consensus 8 ~~~~~pl~~~--~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~~-------------~~Sst~~~~~C~s~~C~~ 72 (403)
T 3aup_A 8 NLVVLPVQND--GSTGLHWANLQKRTPLMQVPVLVDLNGNHLWVNCEQQ-------------YSSKTYQAPFCHSTQCSR 72 (403)
T ss_dssp CCEEEEEEEC--TTTCCEEEEEEETTTTEEEEEEEETTCSSEEEECSSC-------------CCCSSCBCCCTTBHHHHH
T ss_pred ccEEEeeecC--CCCceEEEEEECCCCCceeEEEEECCCCceeECCCCC-------------CCCCCCCccCCCCccccC
Confidence 3466888742 4678999999999999999999999999999998874 379999999999999987
Q ss_pred ccCC-----------CCCCCCceeeeeeC-CCCeEEEEEEEEEEEECC-----------EEeeeeEEEEEEecCC---CC
Q 011042 219 LENA-----------GCHAGRCRYEVSYG-DGSYTKGTLALETLTIGR-----------TVVKNVAIGCGHKNQG---MF 272 (495)
Q Consensus 219 ~~~~-----------~C~~~~~~~~~~Yg-dGs~~~G~~~~Dtvt~g~-----------~~~~~~~fG~~~~~~g---~f 272 (495)
.... .|.+..|.|.+.|+ ||+.+.|.+++|+|+|++ ..++++.|||++...+ .+
T Consensus 73 ~~~~~c~~c~~~~~s~~~~~~~~~~~~Y~~d~~~~~G~~~~Dtv~ig~~~g~~~~~~~~~~v~~~~Fg~~~~~~~~~~~~ 152 (403)
T 3aup_A 73 ANTHQCLSCPAASRPGCHKNTCGLMSTNPITQQTGLGELGEDVLAIHATQGSTQQLGPLVTVPQFLFSCAPSFLVQKGLP 152 (403)
T ss_dssp TTCCCEEECSSSCBTTBCSSEEEEEEEETTTTEEEEEEEEEEEEEEEECCC----CCCEEEEEEEEEEEECGGGGSSSSS
T ss_pred ccccCccccCCCCCCCCCCCcceeEeecCCCCceeeEEEEEEEEEecccCCccccccccccccCEEEECCcccccccCCC
Confidence 6433 35557899999998 788889999999999976 7899999999998743 33
Q ss_pred CCcceEEeeCCCCCCccccccC--ccCCeEEEEeecCCCCCcceEEecccC---C--C-C-----CceEEecccCCCCCe
Q 011042 273 VGAAGLLGLGGGSMSLVGQLGG--QTGGAFSYCLVSRGTGSSGSLVFGREA---L--P-V-----GAAWVPLVRNPRAPS 339 (495)
Q Consensus 273 ~~~~GIlGLg~~~~s~~~ql~~--~~~~~FS~cL~~~~~~~~G~L~fGg~~---~--~-~-----~~~~tpl~~~~~~~~ 339 (495)
..++||||||++.+++++|+.. +..++||+||.+... ..|.|+||+ + + . | ++.|+|++.++ ..
T Consensus 153 ~~~dGIlGLg~~~~s~~~ql~~~~~~~~~FS~~L~~~~~-~~G~l~fGg-d~~~~~~~~G~~~~~~l~~~Pl~~~~--~~ 228 (403)
T 3aup_A 153 RNTQGVAGLGHAPISLPNQLASHFGLQRQFTTCLSRYPT-SKGAIIFGD-APNNMRQFQNQDIFHDLAFTPLTITL--QG 228 (403)
T ss_dssp TTCCEEEECSSSTTSHHHHHHHHHTCCSEEEEECCSCTT-SCEEEEESC-HHHHC--CTTCCTTTTEEEEECEECT--TS
T ss_pred CCCceEEECCCCCcCHHHHHHhhcCCCCeEEEEcCCCCC-CCeeEEECC-CchhccccccccccCceeecccccCC--CC
Confidence 6789999999999999999865 567899999987533 379999999 5 5 3 4 89999998653 36
Q ss_pred EEEEEeeeeEecCeee-ccccccccccccCCCcEEEccCCceeeecHHHHHHHHHHHHHhhCCCCCCCCccccccccccc
Q 011042 340 FYYVGLSGLGVGGMRI-PISEDLFRLTQMGDDGVVMDTGTAVTRLPTPAYEAFRDAFVAQTGNLPRASGVSIFDTCYNLS 418 (495)
Q Consensus 340 ~y~v~l~gisvgg~~l-~i~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~ 418 (495)
||+|.|++|+||++.+ .+++..+.+++.+.+++||||||++++||+++|++|+++|.+.+..++.......++.|++..
T Consensus 229 ~y~v~l~~i~v~g~~~~~~~~~~~~~~~~g~~~aiiDSGTt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~c~~c~ 308 (403)
T 3aup_A 229 EYNVRVNSIRINQHSVFPLNKISSTIVGSTSGGTMISTSTPHMVLQQSVYQAFTQVFAQQLPKQAQVKSVAPFGLCFNSN 308 (403)
T ss_dssp CEEECEEEEEETTEEEECC------------CCEEECSSCSSEEECHHHHHHHHHHHHHTSCGGGEECCCTTCSCEECGG
T ss_pred cceEEEEEEEECCEEcccCChhHeeeccCCCCCEEEECCCccEEeCHHHHHHHHHHHHHHhccccccCCCCCCCceEECC
Confidence 9999999999999999 777777776666778899999999999999999999999987754332222222234676532
Q ss_pred CcccccccEEEEEEeCC--CEEEeCCCCeEEEecCCCceEEEEEecCC---CceeecHhhhcceEEEEECCCCEEEE---
Q 011042 419 GFVSVRVPTVSFYFSGG--PVLTLPASNFLIPVDDAGTFCFAFAPSPS---GLSIIGNIQQEGIQISFDGANGFVGF--- 490 (495)
Q Consensus 419 ~~~~~~~P~i~f~f~gg--~~~~l~~~~y~~~~~~~~~~Cl~~~~~~~---~~~IlG~~fl~~~yvvfD~~~~~IGF--- 490 (495)
....+|+|+|+|+|+ ++|+|++++|+++.. .+..|++|++.+. +.||||+.|||++|+|||++++||||
T Consensus 309 --~~~~~P~i~f~f~g~~~~~~~l~~~~y~~~~~-~~~~C~~~~~~~~~~~~~~ILG~~fl~~~yvvfD~~~~rIGf~A~ 385 (403)
T 3aup_A 309 --KINAYPSVDLVMDKPNGPVWRISGEDLMVQAQ-PGVTCLGVMNGGMQPRAEITLGARQLEENLVVFDLARSRVGFSTS 385 (403)
T ss_dssp --GCCCCCCEEEEESSTTCCEEEECHHHHEEEC----CEEECEEECCSCCSSSEEECHHHHTTSCEEEETTTTEEEEESS
T ss_pred --CcCcCCcEEEEEcCCCceEEEEcccceEEEcC-CCeEEEEEEcCCCCCCCcEEEChHHhcCeEEEEECCCCEEEEecc
Confidence 224799999999865 699999999999865 3678999988643 57999999999999999999999999
Q ss_pred ----eeCCC
Q 011042 491 ----GPNVC 495 (495)
Q Consensus 491 ----a~~~C 495 (495)
++++|
T Consensus 386 ~~~~~~~~C 394 (403)
T 3aup_A 386 SLHSHGVKC 394 (403)
T ss_dssp CGGGGTCCG
T ss_pred cccccCCCc
Confidence 66776
No 3
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A
Probab=100.00 E-value=1e-57 Score=469.51 Aligned_cols=304 Identities=27% Similarity=0.464 Sum_probs=254.7
Q ss_pred ceeeeecccCCCcceEEEEEeeCCCCceeeEEEecCCCceeEecCCCCCcccCCCCccCCCCCCccccccCCChhccccc
Q 011042 141 FGTDVVSGMDQGSGEYFVRIGVGSPPRSQYMVIDSGSDIVWVQCQPCSQCYKQSDPVFDPADSASFSGVSCSSAVCDRLE 220 (495)
Q Consensus 141 ~~~p~~~~~~~~~~~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~ 220 (495)
...|+.+ +.+.+|+++|+||||||++.|+|||||+++||+|..|..|.++.++.|||++|+||+..
T Consensus 46 ~~~~l~n---~~d~~Y~~~i~iGTPpQ~~~v~~DTGSs~lWV~s~~C~~~~C~~~~~y~~~~SsT~~~~----------- 111 (370)
T 3psg_A 46 GDEPLEN---YLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFEAT----------- 111 (370)
T ss_dssp CCCTTGG---GTTCCEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSGGGTTSCCBCGGGCTTCEEE-----------
T ss_pred ceeccee---ccCCEEEEEEEEcCCCCEEEEEEeCCCCccEEECCCCCCcccCCCCCCCCccCcCcEEC-----------
Confidence 3456655 67889999999999999999999999999999999998887788999999999999996
Q ss_pred CCCCCCCCceeeeeeCCCCeEEEEEEEEEEEECCEEeeeeEEEEEEecCCC-C--CCcceEEeeCCCCCCccc------c
Q 011042 221 NAGCHAGRCRYEVSYGDGSYTKGTLALETLTIGRTVVKNVAIGCGHKNQGM-F--VGAAGLLGLGGGSMSLVG------Q 291 (495)
Q Consensus 221 ~~~C~~~~~~~~~~YgdGs~~~G~~~~Dtvt~g~~~~~~~~fG~~~~~~g~-f--~~~~GIlGLg~~~~s~~~------q 291 (495)
+|.|.+.|++|+ ..|.+++|+|+|++..++++.|||++...+. | ...+||||||++.++... +
T Consensus 112 -------~~~~~i~Yg~Gs-~~G~~~~Dtv~ig~~~v~~~~Fg~a~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~ 183 (370)
T 3psg_A 112 -------SQELSITYGTGS-MTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDN 183 (370)
T ss_dssp -------EEEEEEESSSCE-EEEEEEEEEEEETTEEEEEEEEEEECSCCCGGGGGCSCSEEEECSCGGGCGGGCCCHHHH
T ss_pred -------CcEEEEEeCCce-EEEEEEEEEEeeCCcccCCeEEEEEEeecccccccCCccceeccCCccccccCCCCHHHH
Confidence 589999999998 4999999999999999999999999988763 3 568999999998876433 2
Q ss_pred c---cCccCCeEEEEeecCCCCCcceEEecccC---CCCCceEEecccCCCCCeEEEEEeeeeEecCeeecccccccccc
Q 011042 292 L---GGQTGGAFSYCLVSRGTGSSGSLVFGREA---LPVGAAWVPLVRNPRAPSFYYVGLSGLGVGGMRIPISEDLFRLT 365 (495)
Q Consensus 292 l---~~~~~~~FS~cL~~~~~~~~G~L~fGg~~---~~~~~~~tpl~~~~~~~~~y~v~l~gisvgg~~l~i~~~~~~~~ 365 (495)
+ +.+..++||+||.+... ..|.|+|||+| +.|++.|+|+. ...||.|.+++|+||++.+...
T Consensus 184 l~~qg~i~~~~FS~~L~~~~~-~~G~l~fGg~D~~~y~g~l~~~pv~----~~~~w~v~l~~i~v~g~~~~~~------- 251 (370)
T 3psg_A 184 LWDQGLVSQDLFSVYLSSNDD-SGSVVLLGGIDSSYYTGSLNWVPVS----VEGYWQITLDSITMDGETIACS------- 251 (370)
T ss_dssp HHHTTCSSSSEEEEEEC------CEEEEETCCCGGGBSSCCEEEECS----EETTEEEEECEEESSSSEEECT-------
T ss_pred HHHCCCCCCCEEEEEEccCCC-CCeEEEEEeeChHhcCCcceeeccc----ccceeEEEEeEEEECCEEEecC-------
Confidence 2 23678999999998633 37999999988 78999999995 3578999999999999877532
Q ss_pred ccCCCcEEEccCCceeeecHHHHHHHHHHHHHhhCCCCCCCCcccccccccccCcccccccEEEEEEeCCCEEEeCCCCe
Q 011042 366 QMGDDGVVMDTGTAVTRLPTPAYEAFRDAFVAQTGNLPRASGVSIFDTCYNLSGFVSVRVPTVSFYFSGGPVLTLPASNF 445 (495)
Q Consensus 366 ~~g~~~~iiDSGTt~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~gg~~~~l~~~~y 445 (495)
+...+||||||+++++|++++++|.+++++.. ...+.+.+ +|... ..+|+|+|+|+ |++++||+++|
T Consensus 252 --~~~~aiiDTGTs~~~lP~~~~~~i~~~i~a~~----~~~g~~~v-~C~~~-----~~lP~i~f~~~-g~~~~l~~~~y 318 (370)
T 3psg_A 252 --GGCQAIVDTGTSLLTGPTSAIANIQSDIGASE----NSDGEMVI-SCSSI-----DSLPDIVFTID-GVQYPLSPSAY 318 (370)
T ss_dssp --TCEEEEECTTCCSEEEEHHHHHHHHHHTTCEE----CTTCCEEC-CGGGG-----GGCCCEEEEET-TEEEEECHHHH
T ss_pred --CCceEEEcCCCCcEECCHHHHHHHHHHhCCcc----cCCCcEEE-ECCCc-----ccCCcEEEEEC-CEEEEECHHHh
Confidence 25679999999999999999999999987652 22332222 67654 67999999997 89999999999
Q ss_pred EEEecCCCceEE-EEEecC-----CCceeecHhhhcceEEEEECCCCEEEEeeCC
Q 011042 446 LIPVDDAGTFCF-AFAPSP-----SGLSIIGNIQQEGIQISFDGANGFVGFGPNV 494 (495)
Q Consensus 446 ~~~~~~~~~~Cl-~~~~~~-----~~~~IlG~~fl~~~yvvfD~~~~~IGFa~~~ 494 (495)
+++ . +..|+ +|.+.+ +..||||++|||++|+|||++++|||||+++
T Consensus 319 i~~-~--~~~C~~~~~~~~~~~~~~~~~ILG~~Fl~~~y~vfD~~~~riGfA~a~ 370 (370)
T 3psg_A 319 ILQ-D--DDSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVGLAPVA 370 (370)
T ss_dssp EEE-C--SSCEEESEEEECCCTTSCCEEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred ccc-C--CCEEEEEEEeCCCCCCCCCcEEeChHHhcceEEEEECCCCEEEEEEcC
Confidence 998 2 34697 677642 2369999999999999999999999999974
No 4
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A*
Probab=100.00 E-value=2.2e-57 Score=465.86 Aligned_cols=312 Identities=21% Similarity=0.377 Sum_probs=261.7
Q ss_pred cceeeeecccCCCcceEEEEEeeCCCCceeeEEEecCCCceeEecCCCC---CcccCCCCccCCCCCCccccccCCChhc
Q 011042 140 DFGTDVVSGMDQGSGEYFVRIGVGSPPRSQYMVIDSGSDIVWVQCQPCS---QCYKQSDPVFDPADSASFSGVSCSSAVC 216 (495)
Q Consensus 140 ~~~~p~~~~~~~~~~~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~C~---~C~~~~~~~fdps~SsT~~~~~C~~~~C 216 (495)
....|+.. +.+++|+++|.||||+|++.|+|||||+++||+|.+|. .|. .++.|||++|+||+..
T Consensus 7 ~~~~~l~~---~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~C~--~~~~y~~~~SsT~~~~------- 74 (361)
T 1mpp_A 7 VDTPGLYD---FDLEEYAIPVSIGTPGQDFYLLFDTGSSDTWVPHKGCDNSEGCV--GKRFFDPSSSSTFKET------- 74 (361)
T ss_dssp EEEEEEEE---TTTTEEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCCGGGTCC--SSCCBCGGGCTTCEEE-------
T ss_pred cceEEeec---CCCCEEEEEEEECCCCcEEEEEEcCCCCCeEECCCCCCCCccCC--CCCcCCCccCCceEec-------
Confidence 34567765 56789999999999999999999999999999999998 675 5789999999999986
Q ss_pred ccccCCCCCCCCceeeeeeCCCCeEEEEEEEEEEEECCEEeeeeEEEEEEecCC------CC--CCcceEEeeCCCCCCc
Q 011042 217 DRLENAGCHAGRCRYEVSYGDGSYTKGTLALETLTIGRTVVKNVAIGCGHKNQG------MF--VGAAGLLGLGGGSMSL 288 (495)
Q Consensus 217 ~~~~~~~C~~~~~~~~~~YgdGs~~~G~~~~Dtvt~g~~~~~~~~fG~~~~~~g------~f--~~~~GIlGLg~~~~s~ 288 (495)
.|.|.+.|++|+ +.|.+++|+|+|++.+++++.|||++...+ .| ...+||||||++.++.
T Consensus 75 -----------~~~~~i~Yg~Gs-~~G~~~~D~v~~g~~~v~~~~fg~~~~~~~~~~~~~~~~~~~~~GilGLg~~~~s~ 142 (361)
T 1mpp_A 75 -----------DYNLNITYGTGG-ANGIYFRDSITVGGATVKQQTLAYVDNVSGPTAEQSPDSELFLDGIFGAAYPDNTA 142 (361)
T ss_dssp -----------EEEEEEECSSCE-EEEEEEEEEEEETTEEEEEEEEEEEEEEESGGGSSCTTCSSCCCEEEECSCGGGSH
T ss_pred -----------CCeEEEEECCce-EEEEEEEEEEEECCEEEeceEEEEEEeccCccccccccccCCCCCEEEeCCccccc
Confidence 589999999999 589999999999999999999999999865 33 5689999999987765
Q ss_pred cc------------cc---cCccCCeEEEEeecCCCCCcceEEecccC---CCCCceEEecccCCCCCeEEEEEeeeeEe
Q 011042 289 VG------------QL---GGQTGGAFSYCLVSRGTGSSGSLVFGREA---LPVGAAWVPLVRNPRAPSFYYVGLSGLGV 350 (495)
Q Consensus 289 ~~------------ql---~~~~~~~FS~cL~~~~~~~~G~L~fGg~~---~~~~~~~tpl~~~~~~~~~y~v~l~gisv 350 (495)
.. +| +.+..++||+||.+. . ..|.|+||++| +.+++.|+|++.+.....+|.|.+++|+|
T Consensus 143 ~~~~~~~~~~~~~~~l~~~g~i~~~~FS~~l~~~-~-~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~~~~~v~l~~i~v 220 (361)
T 1mpp_A 143 MEAEYGDTYNTVHVNLYKQGLISSPVFSVYMNTN-D-GGGQVVFGGVNNTLLGGDIQYTDVLKSRGGYFFWDAPVTGVKI 220 (361)
T ss_dssp HHHHHSCCCCCHHHHHHHTTSSSSSEEEEECCCS-S-SEEEEEESSCCGGGBSSCCEEEECEEETTEEEEEEEEEEEEEE
T ss_pred ccccccccCCCHHHHHHHcCCCCCcEEEEEecCC-C-CCcEEEEecCChhhcCCceEEEEcccCCCceeEEEEEEeEEEE
Confidence 43 23 236789999999875 2 37999999987 78999999997643223499999999999
Q ss_pred cCeeeccccccccccccCCCcEE-EccCCceeeecHHHHHHHHHHHHHhhCCCCCCCCcccccccccccCcccccc-cEE
Q 011042 351 GGMRIPISEDLFRLTQMGDDGVV-MDTGTAVTRLPTPAYEAFRDAFVAQTGNLPRASGVSIFDTCYNLSGFVSVRV-PTV 428 (495)
Q Consensus 351 gg~~l~i~~~~~~~~~~g~~~~i-iDSGTt~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~-P~i 428 (495)
+++.+..+. ...+| |||||++++||+++|++|++++.+.. +...+.+.+ +|+.. ..+ |+|
T Consensus 221 ~~~~~~~~~---------~~~ai~iDSGTt~~~lP~~~~~~l~~~~~~~~---~~~~g~~~~-~C~~~-----~~~~p~i 282 (361)
T 1mpp_A 221 DGSDAVSFD---------GAQAFTIDTGTNFFIAPSSFAEKVVKAALPDA---TESQQGYTV-PCSKY-----QDSKTTF 282 (361)
T ss_dssp TTEEEEEEE---------EEEEEEEETTCCSEEEEHHHHHHHHHHHCTTC---EEETTEEEE-EHHHH-----TTCCCEE
T ss_pred CCeeeccCC---------CCEEEEECCCCCceeCCHHHHHHHHHHhCCcc---cCCCCcEEE-ECCCc-----ccCCCcE
Confidence 998875321 35699 99999999999999999999997642 233333333 78764 567 999
Q ss_pred EEEEe-C-----CCEEEeCCCCeEEEecCCCceEE-EEEecCCCceeecHhhhcceEEEEECCCCEEEEeeCCC
Q 011042 429 SFYFS-G-----GPVLTLPASNFLIPVDDAGTFCF-AFAPSPSGLSIIGNIQQEGIQISFDGANGFVGFGPNVC 495 (495)
Q Consensus 429 ~f~f~-g-----g~~~~l~~~~y~~~~~~~~~~Cl-~~~~~~~~~~IlG~~fl~~~yvvfD~~~~~IGFa~~~C 495 (495)
+|+|. + |++++||+++|+++....+..|+ +|++...+.||||++|||++|+|||++++|||||+++|
T Consensus 283 ~f~f~~g~~~~~g~~~~i~~~~y~~~~~~~~~~C~~~i~~~~~~~~iLG~~fl~~~yvvfD~~~~~igfa~~~~ 356 (361)
T 1mpp_A 283 SLVLQKSGSSSDTIDVSVPISKMLLPVDKSGETCMFIVLPDGGNQFIVGNLFLRFFVNVYDFGKNRIGFAPLAS 356 (361)
T ss_dssp EEEEECTTCSSCEEEEEEEGGGGEEECSSSSCEEEESEEEESSSCCEEEHHHHTTEEEEEETTTTEEEEEEBCT
T ss_pred EEEEEcCCcCCCCeEEEECHHHhEEecCCCCCeeEEEEEeCCCCCEEEChHHhccEEEEEECCCCEEEEEEccc
Confidence 99993 4 79999999999998753456897 88876556799999999999999999999999999998
No 5
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A
Probab=100.00 E-value=9.9e-57 Score=454.61 Aligned_cols=297 Identities=22% Similarity=0.401 Sum_probs=251.0
Q ss_pred CCcceEEEEEeeCCCCceeeEEEecCCCceeEecCCCCCcccCCCCccCCCCCCccccccCCChhcccccCCCCCCCCce
Q 011042 151 QGSGEYFVRIGVGSPPRSQYMVIDSGSDIVWVQCQPCSQCYKQSDPVFDPADSASFSGVSCSSAVCDRLENAGCHAGRCR 230 (495)
Q Consensus 151 ~~~~~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~~C~~~~~~ 230 (495)
..+.+|+++|.||||+|++.|+|||||+++||+|.+|..| ++.++.|||++|+||+.. .|.
T Consensus 12 ~~~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c~~c-~~~~~~y~~~~SsT~~~~------------------~~~ 72 (325)
T 2apr_A 12 GNDIEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNC-GSGQTKYDPNQSSTYQAD------------------GRT 72 (325)
T ss_dssp TTTTEEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCSSC-CTTSCCBCGGGCTTCEEE------------------EEE
T ss_pred CCCCEEEEEEEECCCCeEEEEEEcCCCCCEEEccCCCchH-hcCCCCCCcccCCCeeeC------------------CCE
Confidence 5678999999999999999999999999999999999999 788999999999999984 589
Q ss_pred eeeeeCCCCeEEEEEEEEEEEECCEEeeeeEEEEEEecCCCC--CCcceEEeeCCCCCCcc-------cccc---CccCC
Q 011042 231 YEVSYGDGSYTKGTLALETLTIGRTVVKNVAIGCGHKNQGMF--VGAAGLLGLGGGSMSLV-------GQLG---GQTGG 298 (495)
Q Consensus 231 ~~~~YgdGs~~~G~~~~Dtvt~g~~~~~~~~fG~~~~~~g~f--~~~~GIlGLg~~~~s~~-------~ql~---~~~~~ 298 (495)
|.+.|++|+.+.|.+++|+|+|++.+++++.|||++...+.| ...+||||||++.++.+ .++. .+.++
T Consensus 73 ~~i~Yg~Gs~~~G~~~~D~v~~g~~~v~~~~fg~~~~~~~~f~~~~~~GilGLg~~~~s~~~~~~~~~~~l~~qg~i~~~ 152 (325)
T 2apr_A 73 WSISYGDGSSASGILAKDNVNLGGLLIKGQTIELAKREAASFASGPNDGLLGLGFDTITTVRGVKTPMDNLISQGLISRP 152 (325)
T ss_dssp EEEECTTSCEEEEEEEEEEEEETTEEEEEEEEEEEEEECHHHHTSSCSEEEECSCGGGCSSTTCCCHHHHHHHTTSCSSS
T ss_pred EEEEECCCCCEEEEEEEEEEEECCEEECcEEEEEEeccCcccccCCCceEEEeCCcccccccCCCCHHHHHHhcCCCCCc
Confidence 999999999779999999999999999999999999876555 34899999999887643 3332 26689
Q ss_pred eEEEEeecCCCCCcceEEecccC---CCCCceEEecccCCCCCeEEEEEeeeeEecCeeeccccccccccccCCCcEEEc
Q 011042 299 AFSYCLVSRGTGSSGSLVFGREA---LPVGAAWVPLVRNPRAPSFYYVGLSGLGVGGMRIPISEDLFRLTQMGDDGVVMD 375 (495)
Q Consensus 299 ~FS~cL~~~~~~~~G~L~fGg~~---~~~~~~~tpl~~~~~~~~~y~v~l~gisvgg~~l~i~~~~~~~~~~g~~~~iiD 375 (495)
+||+||.+......|.|+||++| +.|++.|+|+.. ..+||.|.+++|+||++ + .. ....+|||
T Consensus 153 ~FS~~l~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~---~~~~~~v~l~~i~vg~~-~--~~--------~~~~~iiD 218 (325)
T 2apr_A 153 IFGVYLGKAKNGGGGEYIFGGYDSTKFKGSLTTVPIDN---SRGWWGITVDRATVGTS-T--VA--------SSFDGILD 218 (325)
T ss_dssp EEEEEECCGGGTCCEEEEETCCCGGGBCSCCEEEECBC---TTSSCEEEECEEEETTE-E--EE--------CCEEEEEC
T ss_pred eEEEEecCCCCCCCCEEEEccCCchhccCceEEEEccC---CCCEEEEEEeEEEECCE-e--cC--------CCceEEEe
Confidence 99999965322247999999987 789999999963 35689999999999993 3 11 14569999
Q ss_pred cCCceeeecHHHHHHHHHHHHHhhCCCCCCCCcccccccccccCcccccccEEEEEEeCCCEEEeCCCCeEEEecCCCce
Q 011042 376 TGTAVTRLPTPAYEAFRDAFVAQTGNLPRASGVSIFDTCYNLSGFVSVRVPTVSFYFSGGPVLTLPASNFLIPVDDAGTF 455 (495)
Q Consensus 376 SGTt~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~gg~~~~l~~~~y~~~~~~~~~~ 455 (495)
|||++++||+++|++|.+++.+.+.. . +.+.+ +|+. ..+|+|+|+|+ |.+++||+++|+++.. +..
T Consensus 219 SGTs~~~lP~~~~~~~~~~~~~~~~~---~-g~~~~-~C~~------~~~p~i~f~f~-g~~~~ip~~~~~~~~~--~~~ 284 (325)
T 2apr_A 219 TGTTLLILPNNIAASVARAYGASDNG---D-GTYTI-SCDT------SAFKPLVFSIN-GASFQVSPDSLVFEEF--QGQ 284 (325)
T ss_dssp TTCSSEEEEHHHHHHHHHHHTCEECS---S-SCEEE-CSCG------GGCCCEEEEET-TEEEEECGGGGEEEEE--TTE
T ss_pred cCCccEECCHHHHHHHHHHHhcccCC---C-CeEEE-ECCC------CCCCcEEEEEC-CEEEEECHHHEEEcCC--CCe
Confidence 99999999999999999999876532 1 32233 7863 35899999998 5599999999998764 678
Q ss_pred EEE-EEecCCCceeecHhhhcceEEEEECCCCEEEEeeCC
Q 011042 456 CFA-FAPSPSGLSIIGNIQQEGIQISFDGANGFVGFGPNV 494 (495)
Q Consensus 456 Cl~-~~~~~~~~~IlG~~fl~~~yvvfD~~~~~IGFa~~~ 494 (495)
|++ |...+.+.||||++|||++|+|||++++|||||+++
T Consensus 285 C~~~i~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~ 324 (325)
T 2apr_A 285 CIAGFGYGNWGFAIIGDTFLKNNYVVFNQGVPEVQIAPVA 324 (325)
T ss_dssp EEESEEEESSSSEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred EEEEEEcCCCCCEEECHHHhcceEEEEECCCCEEEEEecC
Confidence 984 665556689999999999999999999999999864
No 6
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}
Probab=100.00 E-value=1.2e-56 Score=458.77 Aligned_cols=308 Identities=26% Similarity=0.441 Sum_probs=253.7
Q ss_pred ceeeeecccCCCcceEEEEEeeCCCCceeeEEEecCCCceeEecCCCCCcccCCCCccCCCCCCccccccCCChhccccc
Q 011042 141 FGTDVVSGMDQGSGEYFVRIGVGSPPRSQYMVIDSGSDIVWVQCQPCSQCYKQSDPVFDPADSASFSGVSCSSAVCDRLE 220 (495)
Q Consensus 141 ~~~p~~~~~~~~~~~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~ 220 (495)
...|+.+ +.+++|+++|.||||+|++.|+|||||+++||+|.+|..+.+..++.|||++|+||+..
T Consensus 13 ~~~~l~n---~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~y~~~~SsT~~~~----------- 78 (351)
T 1tzs_A 13 AKEPLIN---YLDMEYFGTISIGSPPQNFTVIFDTGSSNLWVPSVYCTSPACKTHSRFQPSQSSTYSQP----------- 78 (351)
T ss_dssp -CCTTGG---GSSSCCCEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSGGGTTSCCBCGGGCTTCBCC-----------
T ss_pred cceecee---cCCCEEEEEEEECCCCeEEEEEEeCCCcceEEecCCCCccccCCCCcCCcccCcceEEC-----------
Confidence 3456664 56789999999999999999999999999999999997433346789999999999985
Q ss_pred CCCCCCCCceeeeeeCCCCeEEEEEEEEEEEECCEEeeeeEEEEEEecCCC-C--CCcceEEeeCCCCCCccc------c
Q 011042 221 NAGCHAGRCRYEVSYGDGSYTKGTLALETLTIGRTVVKNVAIGCGHKNQGM-F--VGAAGLLGLGGGSMSLVG------Q 291 (495)
Q Consensus 221 ~~~C~~~~~~~~~~YgdGs~~~G~~~~Dtvt~g~~~~~~~~fG~~~~~~g~-f--~~~~GIlGLg~~~~s~~~------q 291 (495)
+|.|.+.|++|+. .|.+++|+|+|++.+++++.|||++...+. | ...+||||||++.++... +
T Consensus 79 -------~~~~~i~Yg~Gs~-~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~ 150 (351)
T 1tzs_A 79 -------GQSFSIQYGTGSL-SGIIGADQVSVEGLTVVGQQFGESVTEPGQTFVDAEFDGILGLGYPSLAVGGVTPVFDN 150 (351)
T ss_dssp -------SCEEEEESSSCEE-EEEEEEEEEEETTEEEEEEEEEEECSCCCGGGGGCSCSEEEECSCGGGSGGGCCCHHHH
T ss_pred -------CCEEEEEeCCCCe-EEEEEEeEEEECCeEECCeEEEEEEeccccccccCCCceEEecCCccccccCCCcHHHH
Confidence 6999999999984 899999999999999999999999987653 2 568999999998876432 2
Q ss_pred c---cCccCCeEEEEeecCCCC-CcceEEecccC---CCCCceEEecccCCCCCeEEEEEeeeeEecCeeeccccccccc
Q 011042 292 L---GGQTGGAFSYCLVSRGTG-SSGSLVFGREA---LPVGAAWVPLVRNPRAPSFYYVGLSGLGVGGMRIPISEDLFRL 364 (495)
Q Consensus 292 l---~~~~~~~FS~cL~~~~~~-~~G~L~fGg~~---~~~~~~~tpl~~~~~~~~~y~v~l~gisvgg~~l~i~~~~~~~ 364 (495)
+ +.+.+++||+||.+.... ..|.|+||+.| +.|++.|+|+. ...||.|.+++|+||++.+...
T Consensus 151 l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~----~~~~~~v~l~~i~v~~~~~~~~------ 220 (351)
T 1tzs_A 151 MMAQNLVDLPMFSVYMSSNPEGGAGSELIFGGYDHSHFSGSLNWVPVT----KQAYWQIALDNIQVGGTVMFCS------ 220 (351)
T ss_dssp HHHTTCCSSSEEEEECCCCC--CTTCEEEETSCCGGGBCSCCEEEECS----EETTEEEEEEEEEETTEEEECT------
T ss_pred HHHCCCCCCCEEEEEEcCCCCCCCCCEEEECCCCHHHcCCceEEEecC----CCceEEEEeCEEEECCceEEcC------
Confidence 3 236689999999876432 37999999987 78999999995 3568999999999999886321
Q ss_pred cccCCCcEEEccCCceeeecHHHHHHHHHHHHHhhCCCCCCCCcccccccccccCcccccccEEEEEEeCCCEEEeCCCC
Q 011042 365 TQMGDDGVVMDTGTAVTRLPTPAYEAFRDAFVAQTGNLPRASGVSIFDTCYNLSGFVSVRVPTVSFYFSGGPVLTLPASN 444 (495)
Q Consensus 365 ~~~g~~~~iiDSGTt~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~gg~~~~l~~~~ 444 (495)
....+||||||++++||+++|++|.+++++... . +.+.+ +|+.. ..+|+|+|+|+ |++++||+++
T Consensus 221 ---~~~~aiiDSGTs~~~lP~~~~~~l~~~~~~~~~---~--g~~~~-~C~~~-----~~~P~i~f~f~-g~~~~i~~~~ 285 (351)
T 1tzs_A 221 ---EGCQAIVDTGTSLITGPSDKIKQLQNAIGAAPV---D--GEYAV-ECANL-----NVMPDVTFTIN-GVPYTLSPTA 285 (351)
T ss_dssp ---TCEEEEECTTCSSEEECHHHHHHHHHHHTCEEC---S--SSEEE-CGGGG-----GGSCCEEEEET-TEEEEECTTT
T ss_pred ---CCceEEeccCCcceeCCHHHHHHHHHHhCCccc---C--CeEEE-eCCCC-----ccCCcEEEEEC-CEEEEECHHH
Confidence 256799999999999999999999999876531 1 33333 78764 57899999996 8999999999
Q ss_pred eEEEecC-CCceEE-EEEec-----CCCceeecHhhhcceEEEEECCCCEEEEeeCCC
Q 011042 445 FLIPVDD-AGTFCF-AFAPS-----PSGLSIIGNIQQEGIQISFDGANGFVGFGPNVC 495 (495)
Q Consensus 445 y~~~~~~-~~~~Cl-~~~~~-----~~~~~IlG~~fl~~~yvvfD~~~~~IGFa~~~C 495 (495)
|+++... .+..|+ +|++. ..+.||||++|||++|+|||++++|||||+++|
T Consensus 286 yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~rigfA~~~~ 343 (351)
T 1tzs_A 286 YTLLDFVDGMQFCSSGFQGLDIHPPAGPLWILGDVFIRQFYSVFDRGNNRVGLAPAVP 343 (351)
T ss_dssp SEECC-----CCEEESEEECCCCTTTCSCEEECHHHHHHEEEEEETTTTEEEEEEBC-
T ss_pred hEeeccCCCCCeEEEEEEECCCCCCCCCeEEEChHHhhheEEEEECCCCEEEEEECCc
Confidence 9997642 246897 78765 245799999999999999999999999999987
No 7
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A*
Probab=100.00 E-value=1.1e-56 Score=454.90 Aligned_cols=299 Identities=23% Similarity=0.397 Sum_probs=253.0
Q ss_pred CCcceEEEEEeeCCCCceeeEEEecCCCceeEecCCCCCcccCCCCccCCCCCCccccccCCChhcccccCCCCCCCCce
Q 011042 151 QGSGEYFVRIGVGSPPRSQYMVIDSGSDIVWVQCQPCSQCYKQSDPVFDPADSASFSGVSCSSAVCDRLENAGCHAGRCR 230 (495)
Q Consensus 151 ~~~~~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~~C~~~~~~ 230 (495)
..+++|+++|.||||+|++.|+|||||+++||+|.+|..|.++.++.|||++|+||+.++ .|.
T Consensus 12 ~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~~~~~~~y~~~~SsT~~~~~-----------------~~~ 74 (329)
T 3c9x_A 12 SADSEYITSVSIGTPAQVLPLDFDTGSSDLWVFSSETPKSSATGHAIYTPSKSSTSKKVS-----------------GAS 74 (329)
T ss_dssp TTCCCEEEEEEETTTTEEEEEEEETTCCCEEECBTTSCHHHHTTSCCBCGGGCTTCEECT-----------------TCB
T ss_pred CCCCEEEEEEEECCCCeEEEEEEcCCCCCeEEecCCCCccccCCCCcCCcccCcCceEcC-----------------CCe
Confidence 567899999999999999999999999999999999999998889999999999999874 589
Q ss_pred eeeeeCCCCeEEEEEEEEEEEECCEEeeeeEEEEEEecCCCC---CCcceEEeeCCCCCCcccc---------cc-CccC
Q 011042 231 YEVSYGDGSYTKGTLALETLTIGRTVVKNVAIGCGHKNQGMF---VGAAGLLGLGGGSMSLVGQ---------LG-GQTG 297 (495)
Q Consensus 231 ~~~~YgdGs~~~G~~~~Dtvt~g~~~~~~~~fG~~~~~~g~f---~~~~GIlGLg~~~~s~~~q---------l~-~~~~ 297 (495)
|.+.|++|+.+.|.+++|+|+|++.+++++.|||++...+.| ...+||||||++.++.+++ +. .+.+
T Consensus 75 ~~i~Yg~Gs~~~G~~~~D~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~~~~l~~~i~~ 154 (329)
T 3c9x_A 75 WSISYGDGSSSSGDVYTDKVTIGGFSVNTQGVESATRVSTEFVQDTVISGLVGLAFDSGNQVRPHPQKTWFSNAASSLAE 154 (329)
T ss_dssp EEEECTTSCEEEEEEEEEEEEETTEEEEEEEEEEEEEECHHHHHCTTCCEEEECSCGGGCCCBSSCCCCHHHHHHTTSSS
T ss_pred EEEEeCCCCcEEEEEEEEEEEECCEEEcceEEEEEEecCccccccCCCceeEEeCcccccccCCCCCCCHHHHHHHhcCC
Confidence 999999999779999999999999999999999999876554 4789999999988775432 22 2567
Q ss_pred CeEEEEeecCCCCCcceEEecccC---CCCCceEEecccCCCCCeEEEEEeeeeEecCeeeccccccccccccCCCcEEE
Q 011042 298 GAFSYCLVSRGTGSSGSLVFGREA---LPVGAAWVPLVRNPRAPSFYYVGLSGLGVGGMRIPISEDLFRLTQMGDDGVVM 374 (495)
Q Consensus 298 ~~FS~cL~~~~~~~~G~L~fGg~~---~~~~~~~tpl~~~~~~~~~y~v~l~gisvgg~~l~i~~~~~~~~~~g~~~~ii 374 (495)
++||+||.+. ..|.|+||+.| +.|++.|+|++. ..+||.|.+++|+||++.+. . ....+||
T Consensus 155 ~~FS~~l~~~---~~G~l~fGg~d~~~~~g~l~~~p~~~---~~~~~~v~l~~i~v~~~~~~--~--------~~~~aii 218 (329)
T 3c9x_A 155 PLFTADLRHG---QNGSYNFGYIDTSVAKGPVAYTPVDN---SQGFWEFTASGYSVGGGKLN--R--------NSIDGIA 218 (329)
T ss_dssp SEEEEECCSS---SCEEEEESSCCGGGCSSCEEEEECBC---TTSSCEEEECCEEETTCCCC--S--------CCEEEEE
T ss_pred CEEEEEecCC---CCcEEEEeCcChhhcccceEEEEccC---CCceEEEEEeeEEECCEecc--C--------CCceEEE
Confidence 9999999863 37999999987 789999999963 35689999999999998763 1 1456999
Q ss_pred ccCCceeeecHHHHHHHHHHHHHhhCCCCCCCCcccccccccccCcccccccEEEEEEeCCCEEEeCCCCeEEEecC-CC
Q 011042 375 DTGTAVTRLPTPAYEAFRDAFVAQTGNLPRASGVSIFDTCYNLSGFVSVRVPTVSFYFSGGPVLTLPASNFLIPVDD-AG 453 (495)
Q Consensus 375 DSGTt~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~gg~~~~l~~~~y~~~~~~-~~ 453 (495)
||||++++||++++++|++++.+.. +....+.+.+ +|+ ..+|+|+|+|+ |++++||+++|+++... ..
T Consensus 219 DSGTt~~~lp~~~~~~i~~~i~~a~--~~~~~~~~~~-~C~-------~~~P~i~f~f~-g~~~~ip~~~~~~~~~~~~~ 287 (329)
T 3c9x_A 219 DTGTTLLLLDDNVVDAYYANVQSAQ--YDNQQEGVVF-DCD-------EDLPSFSFGVG-SSTITIPGDLLNLTPLEEGS 287 (329)
T ss_dssp CTTCCSEEECHHHHHHHHTTCTTCE--EETTTTEEEE-ETT-------CCCCCEEEEET-TEEEEECGGGGEEEESSTTC
T ss_pred ECCCCcEeCCHHHHHHHHHhCCCcE--EcCCCCEEEE-ECC-------CCCCcEEEEEC-CEEEEECHHHeeeeccCCCC
Confidence 9999999999999999998874432 1222233333 786 35899999997 89999999999987642 24
Q ss_pred ceEEE-EEecC-CCceeecHhhhcceEEEEECCCCEEEEeeC
Q 011042 454 TFCFA-FAPSP-SGLSIIGNIQQEGIQISFDGANGFVGFGPN 493 (495)
Q Consensus 454 ~~Cl~-~~~~~-~~~~IlG~~fl~~~yvvfD~~~~~IGFa~~ 493 (495)
..|++ |.+.+ .+.||||++|||++|+|||++++|||||+.
T Consensus 288 ~~C~~~i~~~~~~~~~ILG~~fl~~~y~vfD~~~~riGfA~~ 329 (329)
T 3c9x_A 288 STCFGGLQSSSGIGINIFGDVALKAALVVFDLGNERLGWAQK 329 (329)
T ss_dssp SEEEESEEECTTTTSEEECHHHHTTEEEEEETTTTEEEEEEC
T ss_pred CeEEEEEEcCCCCCcEEEChHHhccEEEEEECCCCEEeEecC
Confidence 78985 77653 467999999999999999999999999974
No 8
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A*
Probab=100.00 E-value=2.2e-56 Score=452.83 Aligned_cols=303 Identities=23% Similarity=0.444 Sum_probs=252.8
Q ss_pred eeeeecccCCCcceEEEEEeeCCCCceeeEEEecCCCceeEecCCCCCcccCCCCccCCCCCCccccccCCChhcccccC
Q 011042 142 GTDVVSGMDQGSGEYFVRIGVGSPPRSQYMVIDSGSDIVWVQCQPCSQCYKQSDPVFDPADSASFSGVSCSSAVCDRLEN 221 (495)
Q Consensus 142 ~~p~~~~~~~~~~~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~ 221 (495)
++|+.+ +.+++|+++|.||||+|++.|+|||||+++||+|.+|..|.+..++.|||++|+||+..
T Consensus 4 ~~~l~~---~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~y~~~~SsT~~~~------------ 68 (329)
T 1dpj_A 4 DVPLTN---YLNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHSKYDHEASSSYKAN------------ 68 (329)
T ss_dssp EEECEE---ETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTSCCBCGGGCTTCEEE------------
T ss_pred ceeeee---cCCCEEEEEEEECCCCcEEEEEEeCCCcCeEEecCCCCCcccCCcCcCCcccCcCeEEC------------
Confidence 467765 45789999999999999999999999999999999998744445789999999999985
Q ss_pred CCCCCCCceeeeeeCCCCeEEEEEEEEEEEECCEEeeeeEEEEEEecCC-CC--CCcceEEeeCCCCCCcccc------c
Q 011042 222 AGCHAGRCRYEVSYGDGSYTKGTLALETLTIGRTVVKNVAIGCGHKNQG-MF--VGAAGLLGLGGGSMSLVGQ------L 292 (495)
Q Consensus 222 ~~C~~~~~~~~~~YgdGs~~~G~~~~Dtvt~g~~~~~~~~fG~~~~~~g-~f--~~~~GIlGLg~~~~s~~~q------l 292 (495)
+|.|.+.|++|+ +.|.+++|+|+|++.+++++.|||++...+ .| ...+||||||++.+++..+ +
T Consensus 69 ------~~~~~i~Yg~Gs-~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~f~~~~~~GilGLg~~~~s~~~~~~~~~~l 141 (329)
T 1dpj_A 69 ------GTEFAIQYGTGS-LEGYISQDTLSIGDLTIPKQDFAEATSEPGLTFAFGKFDGILGLGYDTISVDKVVPPFYNA 141 (329)
T ss_dssp ------EEEEEEEETTEE-EEEEEEEEEEEETTEEEEEEEEEEEEECCHHHHTTCSCSEEEECSCGGGCGGGCCCHHHHH
T ss_pred ------CcEEEEEECCce-EEEEEEEEEEEECCeEECCeEEEEEEecCccccccCCcceEEEeCCchhhccCCCCHHHHH
Confidence 599999999995 589999999999999999999999998765 22 5689999999998775432 2
Q ss_pred ---cCccCCeEEEEeecCCC--CCcceEEecccC---CCCCceEEecccCCCCCeEEEEEeeeeEecCeeeccccccccc
Q 011042 293 ---GGQTGGAFSYCLVSRGT--GSSGSLVFGREA---LPVGAAWVPLVRNPRAPSFYYVGLSGLGVGGMRIPISEDLFRL 364 (495)
Q Consensus 293 ---~~~~~~~FS~cL~~~~~--~~~G~L~fGg~~---~~~~~~~tpl~~~~~~~~~y~v~l~gisvgg~~l~i~~~~~~~ 364 (495)
+.+.+++||+||.+... ...|.|+||+.| +.+++.|+|+. ...||.|.+++|+||++.+...
T Consensus 142 ~~qg~i~~~~Fs~~l~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~----~~~~~~v~l~~i~v~~~~~~~~------ 211 (329)
T 1dpj_A 142 IQQDLLDEKRFAFYLGDTSKDTENGGEATFGGIDESKFKGDITWLPVR----RKAYWEVKFEGIGLGDEYAELE------ 211 (329)
T ss_dssp HHTTCCSSSEEEEEECCGGGTCSSSEEEEESSCCGGGEEEEEEEEECS----SBTTBEEEEEEEEETTEEEECS------
T ss_pred HhcCCcCCCEEEEEecCCCCCCCCCcEEEEcCCChhhcCCceEEEEcC----CCceEEEEeeeEEECCeEecCC------
Confidence 22567999999976432 136999999987 67899999995 3568999999999999887532
Q ss_pred cccCCCcEEEccCCceeeecHHHHHHHHHHHHHhhCCCCCCCCcccccccccccCcccccccEEEEEEeCCCEEEeCCCC
Q 011042 365 TQMGDDGVVMDTGTAVTRLPTPAYEAFRDAFVAQTGNLPRASGVSIFDTCYNLSGFVSVRVPTVSFYFSGGPVLTLPASN 444 (495)
Q Consensus 365 ~~~g~~~~iiDSGTt~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~gg~~~~l~~~~ 444 (495)
...+||||||++++||+++|++|++++++.. ...+.+.+ +|+. ...+|+|+|+|+ |++++|++++
T Consensus 212 ----~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~----~~~g~~~~-~C~~-----~~~~P~i~f~f~-g~~~~i~~~~ 276 (329)
T 1dpj_A 212 ----SHGAAIDTGTSLITLPSGLAEMINAEIGAKK----GWTGQYTL-DCNT-----RDNLPDLIFNFN-GYNFTIGPYD 276 (329)
T ss_dssp ----SCEEEECTTCSCEEECHHHHHHHHHHHTCEE----CTTSSEEE-CGGG-----GGGCCCEEEEET-TEEEEECTTT
T ss_pred ----CccEEeeCCCCcEECCHHHHHHHHHHhCCcc----CCCCeEEE-ECCC-----CCcCCcEEEEEC-CEEEEECHHH
Confidence 5679999999999999999999999986541 12222222 5654 367999999997 8999999999
Q ss_pred eEEEecCCCceEE-EEEec-----CCCceeecHhhhcceEEEEECCCCEEEEeeCC
Q 011042 445 FLIPVDDAGTFCF-AFAPS-----PSGLSIIGNIQQEGIQISFDGANGFVGFGPNV 494 (495)
Q Consensus 445 y~~~~~~~~~~Cl-~~~~~-----~~~~~IlG~~fl~~~yvvfD~~~~~IGFa~~~ 494 (495)
|+++.. ..|+ +|.+. .++.||||++|||++|+|||++++|||||+++
T Consensus 277 y~~~~~---~~C~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~ 329 (329)
T 1dpj_A 277 YTLEVS---GSCISAITPMDFPEPVGPLAIVGDAFLRKYYSIYDLGNNAVGLAKAI 329 (329)
T ss_dssp SEEEET---TEEEECEEECCCCTTTCSEEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred hEecCC---CEEEEEEEecccCCCCCCcEEEChHHhcceEEEEECCCCEEEEEECC
Confidence 999864 5897 78764 23579999999999999999999999999875
No 9
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A
Probab=100.00 E-value=7e-57 Score=455.32 Aligned_cols=300 Identities=24% Similarity=0.428 Sum_probs=252.7
Q ss_pred eeeeecccCCCcceEEEEEeeCCCCceeeEEEecCCCceeEecCCC--CCcccCCCCccCCCCCCccccccCCChhcccc
Q 011042 142 GTDVVSGMDQGSGEYFVRIGVGSPPRSQYMVIDSGSDIVWVQCQPC--SQCYKQSDPVFDPADSASFSGVSCSSAVCDRL 219 (495)
Q Consensus 142 ~~p~~~~~~~~~~~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~C--~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~ 219 (495)
..|+.+ +.+++|+++|.||||+|++.|+|||||+++||+|.+| ..|. .++.|||++|+||+..
T Consensus 5 ~~~l~n---~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~C~--~~~~y~~~~SsT~~~~---------- 69 (323)
T 3cms_A 5 SVPLTN---YLDSQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNACK--NHQRFDPRKSSTFQNL---------- 69 (323)
T ss_dssp EEEEEE---ETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHH--TSCCBCGGGCTTCEEE----------
T ss_pred eeeeEe---ccCCEEEEEEEECCCCeEEEEEEeCCccceEEcCCCCCccccc--CCCCCCCccCCCeEEC----------
Confidence 467765 5678999999999999999999999999999999999 4575 5789999999999986
Q ss_pred cCCCCCCCCceeeeeeCCCCeEEEEEEEEEEEECCEEeeeeEEEEEEecCCC-C--CCcceEEeeCCCCCCccc------
Q 011042 220 ENAGCHAGRCRYEVSYGDGSYTKGTLALETLTIGRTVVKNVAIGCGHKNQGM-F--VGAAGLLGLGGGSMSLVG------ 290 (495)
Q Consensus 220 ~~~~C~~~~~~~~~~YgdGs~~~G~~~~Dtvt~g~~~~~~~~fG~~~~~~g~-f--~~~~GIlGLg~~~~s~~~------ 290 (495)
+|.|.+.|++|+ +.|.+++|+|+|++.+++++.|||++...+. | ...+||||||++.++...
T Consensus 70 --------~~~~~i~Yg~Gs-~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~ 140 (323)
T 3cms_A 70 --------GKPLSIHYGTGS-MQGILGYDTVTVSNIVDIQQTVGLSTQEPGDFFTYAEFDGILGMAYPSLASEYSIPVFD 140 (323)
T ss_dssp --------EEEEEEEETTEE-EEEEEEEEEEEETTEEEEEEEEEEEEECCSHHHHHSSCSEEEECSCGGGSCTTCCCHHH
T ss_pred --------CcEEEEEeCCCC-eEEEEEEEEEEECCeEEeccEEEEEEecccccccccCCceEEecCcchhhccCCCCHHH
Confidence 589999999998 5899999999999999999999999988652 3 578999999998876432
Q ss_pred cc---cCccCCeEEEEeecCCCCCcceEEecccC---CCCCceEEecccCCCCCeEEEEEeeeeEecCeeeccccccccc
Q 011042 291 QL---GGQTGGAFSYCLVSRGTGSSGSLVFGREA---LPVGAAWVPLVRNPRAPSFYYVGLSGLGVGGMRIPISEDLFRL 364 (495)
Q Consensus 291 ql---~~~~~~~FS~cL~~~~~~~~G~L~fGg~~---~~~~~~~tpl~~~~~~~~~y~v~l~gisvgg~~l~i~~~~~~~ 364 (495)
++ ..+.+++||+||.+... .|.|+||+.| +.+++.|+|+. ...||.|.+++|+||++.+.++.
T Consensus 141 ~l~~q~~i~~~~FS~~l~~~~~--~G~l~fGg~d~~~~~g~l~~~p~~----~~~~~~v~l~~i~v~~~~~~~~~----- 209 (323)
T 3cms_A 141 NMMNRHLVAQDLFSVYMDRNGQ--ESMLTLGAIDPSYYTGSLHWVPVT----VQQYWQFTVDSVTISGVVVACEG----- 209 (323)
T ss_dssp HHHHTTCSSSSEEEEECCTTSS--CEEEEESCCCGGGEEEEEEEEECS----SBTTBEEEEEEEEETTEEEESTT-----
T ss_pred HHHHCCCCCCCEEEEEECCCCC--CEEEEECCCChhhccCceEEEECc----cCCeEEEEEeeEEECCEEeecCC-----
Confidence 22 23568999999987533 3999999987 66899999995 35689999999999999875431
Q ss_pred cccCCCcEEEccCCceeeecHHHHHHHHHHHHHhhCCCCCCCCcccccccccccCcccccccEEEEEEeCCCEEEeCCCC
Q 011042 365 TQMGDDGVVMDTGTAVTRLPTPAYEAFRDAFVAQTGNLPRASGVSIFDTCYNLSGFVSVRVPTVSFYFSGGPVLTLPASN 444 (495)
Q Consensus 365 ~~~g~~~~iiDSGTt~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~gg~~~~l~~~~ 444 (495)
...+||||||++++||++++++|++++++.. ...+.+.+ +|++. ..+|+|+|+|+ |++++||+++
T Consensus 210 ----~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~----~~~g~~~~-~C~~~-----~~~P~i~f~f~-g~~~~i~~~~ 274 (323)
T 3cms_A 210 ----GCQAILDTGTSKLVGPSSDILNIQQAIGATQ----NQYGEFDI-DCDNL-----SYMPTVVFEIN-GKMYPLTPSA 274 (323)
T ss_dssp ----CEEEEECTTCCSEEECHHHHHHHHHHHTCEE----ETTTEEEE-CTTCT-----TTSCCEEEEET-TEEEEECHHH
T ss_pred ----CcEEEEecCCccEeCCHHHHHHHHHHhCCee----cCCCcEEE-ECCCC-----ccCceEEEEEC-CEEEEECHHH
Confidence 4579999999999999999999999986542 12232223 78764 57899999996 8999999999
Q ss_pred eEEEecCCCceEE-EEEec-CCCceeecHhhhcceEEEEECCCCEEEEeeCC
Q 011042 445 FLIPVDDAGTFCF-AFAPS-PSGLSIIGNIQQEGIQISFDGANGFVGFGPNV 494 (495)
Q Consensus 445 y~~~~~~~~~~Cl-~~~~~-~~~~~IlG~~fl~~~yvvfD~~~~~IGFa~~~ 494 (495)
|+++ .+..|+ +|++. ..+.||||++|||++|+|||++++|||||+++
T Consensus 275 y~~~---~~~~C~~~i~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~ 323 (323)
T 3cms_A 275 YTSQ---DQGFCTSGFQSENHSQKWILGDVFIREYYSVFDRANNLVGLAKAI 323 (323)
T ss_dssp HEEE---ETTEEEESEEEC---CCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred hccC---CCCEEEEEEEeCCCCCcEEECHHHhhceEEEEECCCCEEEEEECC
Confidence 9998 257897 68876 35679999999999999999999999999874
No 10
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens}
Probab=100.00 E-value=5.4e-57 Score=465.46 Aligned_cols=304 Identities=21% Similarity=0.378 Sum_probs=255.9
Q ss_pred ceeeeecccCCCcceEEEEEeeCCCCceeeEEEecCCCceeEecCCCC----CcccCCCCccCCCCCCccccccCCChhc
Q 011042 141 FGTDVVSGMDQGSGEYFVRIGVGSPPRSQYMVIDSGSDIVWVQCQPCS----QCYKQSDPVFDPADSASFSGVSCSSAVC 216 (495)
Q Consensus 141 ~~~p~~~~~~~~~~~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~C~----~C~~~~~~~fdps~SsT~~~~~C~~~~C 216 (495)
...|+.+ +.+.+|+++|+||||||+|.|+|||||+++||+|..|. .|. .++.|||++|+||+..
T Consensus 51 ~~~~l~n---~~~~~Y~~~I~IGTP~Q~f~vi~DTGSs~lWV~s~~C~~~~~~C~--~~~~y~~~~SsT~~~~------- 118 (383)
T 2x0b_A 51 SSVILTN---YMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACV--YHKLFDASDSSSYKHN------- 118 (383)
T ss_dssp CEEEEEE---ETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTSCTTSHHHH--TSCCBCGGGCTTCEEE-------
T ss_pred ceEeeee---cCCCEEEEEEEECCCCcEEEEEEeCCCCCeEEeccCCCCCccccc--CCCCCCCCCCCcEEEC-------
Confidence 3467775 56789999999999999999999999999999999996 586 4689999999999986
Q ss_pred ccccCCCCCCCCceeeeeeCCCCeEEEEEEEEEEEECCEEeeeeEEEEEEecCCC-C--CCcceEEeeCCCCCCccc---
Q 011042 217 DRLENAGCHAGRCRYEVSYGDGSYTKGTLALETLTIGRTVVKNVAIGCGHKNQGM-F--VGAAGLLGLGGGSMSLVG--- 290 (495)
Q Consensus 217 ~~~~~~~C~~~~~~~~~~YgdGs~~~G~~~~Dtvt~g~~~~~~~~fG~~~~~~g~-f--~~~~GIlGLg~~~~s~~~--- 290 (495)
+|.|.+.|++|+ ..|.+++|+|+|++..++ +.|||++...+. | ..++||||||++.++...
T Consensus 119 -----------~~~~~i~Yg~Gs-~~G~~~~Dtv~ig~~~v~-~~Fg~a~~~~g~~f~~~~~dGIlGLg~~~~s~~~~~~ 185 (383)
T 2x0b_A 119 -----------GTELTLRYSTGT-VSGFLSQDIITVGGITVT-QMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVTP 185 (383)
T ss_dssp -----------EEEEEEECSSCE-EEEEEEEEEEEETTEEEE-EEEEEEEECCHHHHTTCSSSEEEECSCGGGCGGGCCC
T ss_pred -----------CcEEEEEcCCcc-EEEEEEeeEEEEcCceEE-EEEEEEEecCCcccccCCCceEeccCCCccccCCCCc
Confidence 599999999998 489999999999999999 999999987653 2 578999999999877432
Q ss_pred ---cc---cCccCCeEEEEeecCCCC---CcceEEecccC---CCCCceEEecccCCCCCeEEEEEeeeeEecCeeeccc
Q 011042 291 ---QL---GGQTGGAFSYCLVSRGTG---SSGSLVFGREA---LPVGAAWVPLVRNPRAPSFYYVGLSGLGVGGMRIPIS 358 (495)
Q Consensus 291 ---ql---~~~~~~~FS~cL~~~~~~---~~G~L~fGg~~---~~~~~~~tpl~~~~~~~~~y~v~l~gisvgg~~l~i~ 358 (495)
++ +.+.+++||+||.+.... ..|.|+|||.| +.|++.|+|+. ..+||.|.+++|+||++.+...
T Consensus 186 ~~~~l~~qg~i~~~~FS~~L~~~~~~~~~~~G~l~fGg~d~~~y~G~l~~~pv~----~~~~w~v~l~~i~v~~~~~~~~ 261 (383)
T 2x0b_A 186 IFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLI----KTGVWQIQMKGVSVGSSTLLCE 261 (383)
T ss_dssp HHHHHHTTTCCSSSEEEEEECCSCC----CCEEEEESSCCGGGEEEEEEEEEBS----STTSCEEEECEEEESSCCCBST
T ss_pred HHHHHHhCCCCCCCEEEEEEcCCCCcccCCCcEEEECCcChHHcCCceEEEEcC----CCceEEEEEeEEEeCCceEEcC
Confidence 22 236689999999886432 37999999988 67899999995 4579999999999999875321
Q ss_pred cccccccccCCCcEEEccCCceeeecHHHHHHHHHHHHHhhCCCCCCCCcccccccccccCcccccccEEEEEEeCCCEE
Q 011042 359 EDLFRLTQMGDDGVVMDTGTAVTRLPTPAYEAFRDAFVAQTGNLPRASGVSIFDTCYNLSGFVSVRVPTVSFYFSGGPVL 438 (495)
Q Consensus 359 ~~~~~~~~~g~~~~iiDSGTt~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~gg~~~ 438 (495)
+...+||||||+++++|++++++|.+++++.. ..+.+.+ +|+.. ..+|+|+|+|+ |+++
T Consensus 262 ---------~~~~aiiDTGTs~~~lP~~~~~~i~~~i~a~~-----~~g~~~v-~C~~~-----~~~P~i~f~~~-g~~~ 320 (383)
T 2x0b_A 262 ---------DGCLALVDTGASYISGSTSSIEKLMEALGAKK-----RLFDYVV-KCNEG-----PTLPDISFHLG-GKEY 320 (383)
T ss_dssp ---------TCEEEEECTTCSSEEECHHHHHHHHHHHTCEE-----CSSCEEE-EGGGT-----TTCCCEEEEET-TEEE
T ss_pred ---------CCcEEEEcCCCceEEcCHHHHHHHHHHhCCcc-----cCCcEEE-ecccc-----ccCceEEEEEC-CEEE
Confidence 25679999999999999999999999997652 3343333 79765 57899999997 8999
Q ss_pred EeCCCCeEEEecCC-CceEE-EEEecC-----CCceeecHhhhcceEEEEECCCCEEEEeeCC
Q 011042 439 TLPASNFLIPVDDA-GTFCF-AFAPSP-----SGLSIIGNIQQEGIQISFDGANGFVGFGPNV 494 (495)
Q Consensus 439 ~l~~~~y~~~~~~~-~~~Cl-~~~~~~-----~~~~IlG~~fl~~~yvvfD~~~~~IGFa~~~ 494 (495)
+|++++|+++.... +..|+ +|.+.+ ++.||||++|||++|+|||++++|||||+++
T Consensus 321 ~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILGd~Fl~~~y~vfD~~~~rIGfA~a~ 383 (383)
T 2x0b_A 321 TLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGFALAR 383 (383)
T ss_dssp EECHHHHBCCCCCCTTSEEEBSEEECCCCTTTCSCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred EECHHHhEeeccCCCCCeEEEEEEecccCCCCCCcEEEChHHhcceEEEEECCCCEEeEEEcC
Confidence 99999999976532 46898 787652 4579999999999999999999999999874
No 11
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2
Probab=100.00 E-value=9e-57 Score=454.69 Aligned_cols=301 Identities=24% Similarity=0.454 Sum_probs=254.1
Q ss_pred eeeeecccCCCcceEEEEEeeCCCCceeeEEEecCCCceeEecCCCCCcccCCCCccCCCCCCccccccCCChhcccccC
Q 011042 142 GTDVVSGMDQGSGEYFVRIGVGSPPRSQYMVIDSGSDIVWVQCQPCSQCYKQSDPVFDPADSASFSGVSCSSAVCDRLEN 221 (495)
Q Consensus 142 ~~p~~~~~~~~~~~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~ 221 (495)
..|+.+ +.+++|+++|.||||+|++.|+|||||+++||+|.+|..+.+..++.|||++|+||+..
T Consensus 3 ~~~l~n---~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~C~~~~~y~~~~SsT~~~~------------ 67 (324)
T 1am5_A 3 TEQMKN---EADTEYYGVISIGTPPESFKVIFDTGSSNLWVSSSHCSAQACSNHNKFKPRQSSTYVET------------ 67 (324)
T ss_dssp EEEEEE---ETTTEEEEEEEETTTTEEEEEEEETTCCCEEECBTTCCSHHHHTSCCBCGGGCTTCEEE------------
T ss_pred eeeeec---CCCCEEEEEEEECCCCeEEEEEEeCCCcceEEecCCCCcccccCCCcCCCccCCCeEeC------------
Confidence 467765 56789999999999999999999999999999999997422235789999999999986
Q ss_pred CCCCCCCceeeeeeCCCCeEEEEEEEEEEEECCEEeeeeEEEEEEecCCC-C--CCcceEEeeCCCCCCcccc------c
Q 011042 222 AGCHAGRCRYEVSYGDGSYTKGTLALETLTIGRTVVKNVAIGCGHKNQGM-F--VGAAGLLGLGGGSMSLVGQ------L 292 (495)
Q Consensus 222 ~~C~~~~~~~~~~YgdGs~~~G~~~~Dtvt~g~~~~~~~~fG~~~~~~g~-f--~~~~GIlGLg~~~~s~~~q------l 292 (495)
+|.|.+.|++|+. .|.+++|+|+|++..++++.|||++...+. | ...+||||||++.++...+ +
T Consensus 68 ------~~~~~i~Yg~Gs~-~G~~~~D~v~~g~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l 140 (324)
T 1am5_A 68 ------GKTVDLTYGTGGM-RGILGQDTVSVGGGSDPNQELGESQTEPGPFQAAAPFDGILGLAYPSIAAAGAVPVFDNM 140 (324)
T ss_dssp ------EEEEEEECSSCEE-EEEEEEEEEESSSSCEEEEEEEEEEECCSTTTTTCSSSEEEECSCGGGCGGGCCCHHHHH
T ss_pred ------CcEEEEEECCCCe-EEEEEECceeECCcEEcccEEEEEEecccccccCCCCceEEecCCccccccCCCchHHhH
Confidence 5899999999987 899999999999999999999999998663 3 5689999999988765432 2
Q ss_pred ---cCccCCeEEEEeecCCCCCcceEEecccC---CCCCceEEecccCCCCCeEEEEEeeeeEecCeeeccccccccccc
Q 011042 293 ---GGQTGGAFSYCLVSRGTGSSGSLVFGREA---LPVGAAWVPLVRNPRAPSFYYVGLSGLGVGGMRIPISEDLFRLTQ 366 (495)
Q Consensus 293 ---~~~~~~~FS~cL~~~~~~~~G~L~fGg~~---~~~~~~~tpl~~~~~~~~~y~v~l~gisvgg~~l~i~~~~~~~~~ 366 (495)
+.+.+++||+||.+.... .|.|+||+.| +.|++.|+|+.. ..+|.|.+++|+||++.+..+
T Consensus 141 ~~qg~i~~~~FS~~l~~~~~~-~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l~~i~v~~~~~~~~-------- 207 (324)
T 1am5_A 141 GSQSLVEKDLFSFYLSGGGAN-GSEVMLGGVDNSHYTGSIHWIPVTA----EKYWQVALDGITVNGQTAACE-------- 207 (324)
T ss_dssp HHTTCSSSSEEEEECCSTTCS-CEEEEESSCCGGGBCSCCEEEEEEE----ETTEEEEECEEEETTEECCCC--------
T ss_pred HhcCCCCCCEEEEEecCCCCC-CcEEEECccCHHHcCCceEEEecCC----CcEEEEEEeEEEECCceeecc--------
Confidence 236689999999886443 7999999987 679999999963 468999999999999875321
Q ss_pred cCCCcEEEccCCceeeecHHHHHHHHHHHHHhhCCCCCCCCcccccccccccCcccccccEEEEEEeCCCEEEeCCCCeE
Q 011042 367 MGDDGVVMDTGTAVTRLPTPAYEAFRDAFVAQTGNLPRASGVSIFDTCYNLSGFVSVRVPTVSFYFSGGPVLTLPASNFL 446 (495)
Q Consensus 367 ~g~~~~iiDSGTt~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~gg~~~~l~~~~y~ 446 (495)
+..+||||||++++||+++|++|++++++. . ..+.+.+ +|+.. ..+|+|+|+|+ |++++||+++|+
T Consensus 208 --~~~aiiDSGTt~~~lp~~~~~~l~~~~~~~-~----~~g~~~~-~C~~~-----~~~P~i~f~f~-g~~~~i~~~~y~ 273 (324)
T 1am5_A 208 --GCQAIVDTGTSKIVAPVSALANIMKDIGAS-E----NQGEMMG-NCASV-----QSLPDITFTIN-GVKQPLPPSAYI 273 (324)
T ss_dssp --CEEEEECTTCSSEEECTTTHHHHHHHHTCE-E----CCCCEEC-CTTSS-----SSSCCEEEEET-TEEEEECHHHHE
T ss_pred --CceEEEecCCccEECCHHHHHHHHHHhCCc-c----cCCcEEE-eCCCc-----ccCCcEEEEEC-CEEEEECHHHhc
Confidence 256999999999999999999999998664 1 2232222 78764 57899999996 899999999999
Q ss_pred EEecCCCceEE-EEEecC-----CCceeecHhhhcceEEEEECCCCEEEEeeCC
Q 011042 447 IPVDDAGTFCF-AFAPSP-----SGLSIIGNIQQEGIQISFDGANGFVGFGPNV 494 (495)
Q Consensus 447 ~~~~~~~~~Cl-~~~~~~-----~~~~IlG~~fl~~~yvvfD~~~~~IGFa~~~ 494 (495)
++. +..|+ +|.+.+ .+.||||++|||++|+|||++++|||||+++
T Consensus 274 ~~~---~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~igfa~a~ 324 (324)
T 1am5_A 274 EGD---QAFCTSGLGSSGVPSNTSELWIFGDVFLRNYYTIYDRTNNKVGFAPAA 324 (324)
T ss_dssp EES---SSCEEECEEECCSCCSSSCEEEECHHHHHHEEEEEETTTTEEEEEEBC
T ss_pred ccC---CCeEEEEEEECccCCCCCCcEEEChHHhccEEEEEECCCCEEEEEECC
Confidence 986 56897 787753 3579999999999999999999999999875
No 12
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ...
Probab=100.00 E-value=2.5e-56 Score=452.43 Aligned_cols=298 Identities=21% Similarity=0.386 Sum_probs=250.0
Q ss_pred CCcceEEEEEeeCCCCceeeEEEecCCCceeEecCCCCCcccCCCCccCCCCCCccccccCCChhcccccCCCCCCCCce
Q 011042 151 QGSGEYFVRIGVGSPPRSQYMVIDSGSDIVWVQCQPCSQCYKQSDPVFDPADSASFSGVSCSSAVCDRLENAGCHAGRCR 230 (495)
Q Consensus 151 ~~~~~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~~C~~~~~~ 230 (495)
..+++|+++|.||||+|++.|+|||||+++||+|.+|..|.+ .++.|||++|+||+.++ .|.
T Consensus 12 ~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~~-~~~~y~~~~SsT~~~~~-----------------~~~ 73 (329)
T 1oew_A 12 SLDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEV-XQTIYTPSKSTTAKLLS-----------------GAT 73 (329)
T ss_dssp TTCCCEEEEEEETTTTEEEEEEEETTCCCEEECBTTSCGGGC--CCCBCGGGCTTCEEEE-----------------EEE
T ss_pred CCCCEEEEEEEECCCCeEEEEEECCCCCCeEEecCCCCcccc-ccCccCCccCccceecC-----------------CCe
Confidence 467899999999999999999999999999999999999987 78899999999999874 589
Q ss_pred eeeeeCCCCeEEEEEEEEEEEECCEEeeeeEEEEEEecCCCC---CCcceEEeeCCCCCCccc---------ccc-CccC
Q 011042 231 YEVSYGDGSYTKGTLALETLTIGRTVVKNVAIGCGHKNQGMF---VGAAGLLGLGGGSMSLVG---------QLG-GQTG 297 (495)
Q Consensus 231 ~~~~YgdGs~~~G~~~~Dtvt~g~~~~~~~~fG~~~~~~g~f---~~~~GIlGLg~~~~s~~~---------ql~-~~~~ 297 (495)
|.+.|++|+.+.|.+++|+|+|++..++++.|||++...+.| ...+||||||++.++... ++. .+.+
T Consensus 74 ~~i~Yg~Gs~~~G~~~~D~v~~g~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~~~~l~~~i~~ 153 (329)
T 1oew_A 74 WSISYGDGSSSSGDVYTDTVSVGGLTVTGQAVESAKKVSSSFTEDSTIDGLLGLAFSTLNTVSPTQQKTFFDNAKASLDS 153 (329)
T ss_dssp EEEECTTSCEEEEEEEEEEEEETTEEEEEEEEEEEEEECHHHHHCTTCCEEEECSCGGGCCCBSSCCCCHHHHHTTTSSS
T ss_pred EEEEeCCCCcEEEEEEEEEEEECCEEEeeeEEEEEEecCccccccCCCceEEEeccccccccCcCCCCCHHHHHHHhccC
Confidence 999999999779999999999999999999999999876554 468999999998876542 332 2567
Q ss_pred CeEEEEeecCCCCCcceEEecccC---CCCCceEEecccCCCCCeEEEEEeeeeEecCeeeccccccccccccCCCcEEE
Q 011042 298 GAFSYCLVSRGTGSSGSLVFGREA---LPVGAAWVPLVRNPRAPSFYYVGLSGLGVGGMRIPISEDLFRLTQMGDDGVVM 374 (495)
Q Consensus 298 ~~FS~cL~~~~~~~~G~L~fGg~~---~~~~~~~tpl~~~~~~~~~y~v~l~gisvgg~~l~i~~~~~~~~~~g~~~~ii 374 (495)
++||+||.+. ..|.|+||++| +.|++.|+|++. ..+||.|.+++|+||++.+.. . ...+||
T Consensus 154 ~~FS~~L~~~---~~G~l~fGg~d~~~~~g~l~~~p~~~---~~~~~~v~l~~i~v~~~~~~~--~--------~~~aii 217 (329)
T 1oew_A 154 PVFTADLGYH---APGTYNFGFIDTTAYTGSITYTAVST---KQGFWEWTSTGYAVGSGTFKS--T--------SIDGIA 217 (329)
T ss_dssp SEEEEECCSS---SCEEEEESCCCTTSSSSCCEEEECBC---TTSSCEEEEEEEEETTSCCEE--E--------EEEEEE
T ss_pred cEEEEEccCC---CCeEEEEeccChHhcccceEEEEccC---CCceEEEEEeeEEECCeeccC--C--------CceEEE
Confidence 9999999863 37999999987 789999999963 356899999999999987631 1 356999
Q ss_pred ccCCceeeecHHHHHHHHHHHHHhhCCCCCCCCcccccccccccCcccccccEEEEEEeCCCEEEeCCCCeEEEecC-CC
Q 011042 375 DTGTAVTRLPTPAYEAFRDAFVAQTGNLPRASGVSIFDTCYNLSGFVSVRVPTVSFYFSGGPVLTLPASNFLIPVDD-AG 453 (495)
Q Consensus 375 DSGTt~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~gg~~~~l~~~~y~~~~~~-~~ 453 (495)
||||++++||++++++|++++.+.. +....+.+.+ +|+ ..+|+|+|+|+ |++++||+++|+++... ..
T Consensus 218 DSGTt~~~lP~~~~~~l~~~i~~a~--~~~~~g~~~~-~C~-------~~~P~i~f~fg-g~~~~ip~~~~~~~~~~~~~ 286 (329)
T 1oew_A 218 DTGTTLLYLPATVVSAYWAQVSGAK--SSSSVGGYVF-PCS-------ATLPSFTFGVG-SARIVIPGDYIDFGPISTGS 286 (329)
T ss_dssp CTTCCSEEECHHHHHHHHTTSTTCE--EETTTTEEEE-ETT-------CCCCCEEEEET-TEEEEECHHHHEEEESSTTC
T ss_pred eCCCCCEECCHHHHHHHHHhCCCcE--EcCCCCEEEE-ECC-------CCCCcEEEEEC-CEEEEECHHHeeeeecCCCC
Confidence 9999999999999999998874432 1222233333 786 35899999995 99999999999987632 34
Q ss_pred ceEEE-EEecC-CCceeecHhhhcceEEEEEC-CCCEEEEeeC
Q 011042 454 TFCFA-FAPSP-SGLSIIGNIQQEGIQISFDG-ANGFVGFGPN 493 (495)
Q Consensus 454 ~~Cl~-~~~~~-~~~~IlG~~fl~~~yvvfD~-~~~~IGFa~~ 493 (495)
..|++ |.+.+ .+.||||++|||++|+|||+ +++|||||+.
T Consensus 287 ~~C~~~i~~~~~~~~~iLG~~fl~~~y~vfD~~~~~riGfA~~ 329 (329)
T 1oew_A 287 SSCFGGIQSSAGIGINIFGDVALKAAFVVFNGATTPTLGFASK 329 (329)
T ss_dssp SEEEESEEESTTTSSEEECHHHHTTEEEEEECSSSCEEEEEEC
T ss_pred CeEEEEEEeCCCCCceEEChHHhcCEEEEEECCCCceEEEecC
Confidence 78985 76653 46799999999999999999 9999999974
No 13
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A
Probab=100.00 E-value=1e-56 Score=453.42 Aligned_cols=301 Identities=26% Similarity=0.412 Sum_probs=251.9
Q ss_pred eeeecccCCCcceEEEEEeeCCCCceeeEEEecCCCceeEecCCCCCcccCCCCccCCCCCCccccccCCChhcccccCC
Q 011042 143 TDVVSGMDQGSGEYFVRIGVGSPPRSQYMVIDSGSDIVWVQCQPCSQCYKQSDPVFDPADSASFSGVSCSSAVCDRLENA 222 (495)
Q Consensus 143 ~p~~~~~~~~~~~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~ 222 (495)
.|+.+ +.+.+|+++|+||||+|++.|++||||+++||+|.+|..|.++.++.|||++|+||+..
T Consensus 3 ~~l~n---~~d~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~C~~~~C~~~~~y~~~~SsT~~~~------------- 66 (320)
T 4aa9_A 3 EPLTS---YLDSQYFGKIYIGTPPQEFTVVFDTGSSDLWVPSIYCKSNVCKNHHRFDPRKSSTFRNL------------- 66 (320)
T ss_dssp --------CCCCCCEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTSCCBCGGGCTTCEEE-------------
T ss_pred cccee---ccCCEEEEEEEECCCCeEEEEEEeCCCCceEEcCCCCCccccCCCCCCCCCCCcCeEcC-------------
Confidence 35554 56789999999999999999999999999999999998655567899999999999996
Q ss_pred CCCCCCceeeeeeCCCCeEEEEEEEEEEEECCEEeeeeEEEEEEecCCC-C--CCcceEEeeCCCCCCcc------ccc-
Q 011042 223 GCHAGRCRYEVSYGDGSYTKGTLALETLTIGRTVVKNVAIGCGHKNQGM-F--VGAAGLLGLGGGSMSLV------GQL- 292 (495)
Q Consensus 223 ~C~~~~~~~~~~YgdGs~~~G~~~~Dtvt~g~~~~~~~~fG~~~~~~g~-f--~~~~GIlGLg~~~~s~~------~ql- 292 (495)
+|.|.+.|++|+. .|.+++|+|+|++.+++++.|||++...+. | ...+||||||++.++.. .++
T Consensus 67 -----~~~~~i~Yg~gs~-~G~~~~D~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~ 140 (320)
T 4aa9_A 67 -----GKPLSIHYGTGSM-EGFLGYDTVTVSNIVDPNQTVGLSTEQPGEVFTYSEFDGILGLAYPSLASEYSVPVFDNMM 140 (320)
T ss_dssp -----EEEEEEEETTEEE-EEEEEEEEEEETTEEEEEEEEEEEEECCSHHHHSCCCSEEEECSCGGGSCTTCCCHHHHHH
T ss_pred -----CcEEEEEECCcEE-EEEEEEEEEEECCEeecCeEEEEEEEcccccccccCcccEEecCcccccccCCCCHHHHHH
Confidence 5899999999994 999999999999999999999999988763 3 45799999999876543 233
Q ss_pred --cCccCCeEEEEeecCCCCCcceEEecccC---CCCCceEEecccCCCCCeEEEEEeeeeEecCeeecccccccccccc
Q 011042 293 --GGQTGGAFSYCLVSRGTGSSGSLVFGREA---LPVGAAWVPLVRNPRAPSFYYVGLSGLGVGGMRIPISEDLFRLTQM 367 (495)
Q Consensus 293 --~~~~~~~FS~cL~~~~~~~~G~L~fGg~~---~~~~~~~tpl~~~~~~~~~y~v~l~gisvgg~~l~i~~~~~~~~~~ 367 (495)
+.+.+++||+||.+. . ..|.|+||++| +.+++.|+|+. ...+|.|.+++|+||++.+..+
T Consensus 141 ~~g~i~~~~Fs~~l~~~-~-~~G~l~fGg~d~~~~~g~l~~~p~~----~~~~w~v~l~~i~v~~~~~~~~--------- 205 (320)
T 4aa9_A 141 DRHLVARDLFSVYMDRN-G-QGSMLTLGAIDPSYYTGSLHWVPVT----LQQYWQFTVDSVTINGVAVACV--------- 205 (320)
T ss_dssp HTTCSSSSEEEEECCSS-S-SCCEEEETCCCGGGEEEEEEEEECS----SBTTBEEEECEEEETTEEEEST---------
T ss_pred hCCCCCCceEEEEeCCC-C-CCeEEEEcccCHHHccCceEEEEcc----cCCceEEEEeEEEECCEEeccC---------
Confidence 236689999999975 2 37999999988 67899999994 4678999999999999987643
Q ss_pred CCCcEEEccCCceeeecHHHHHHHHHHHHHhhCCCCCCCCcccccccccccCcccccccEEEEEEeCCCEEEeCCCCeEE
Q 011042 368 GDDGVVMDTGTAVTRLPTPAYEAFRDAFVAQTGNLPRASGVSIFDTCYNLSGFVSVRVPTVSFYFSGGPVLTLPASNFLI 447 (495)
Q Consensus 368 g~~~~iiDSGTt~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~gg~~~~l~~~~y~~ 447 (495)
....+||||||++++||++++++|++++++.. ...+.+.+ +|+.. ..+|+|+|+|+ |++++||+++|+.
T Consensus 206 ~~~~~iiDsGtt~~~lP~~~~~~i~~~~~~~~----~~~g~~~~-~C~~~-----~~~p~i~f~f~-g~~~~l~~~~y~~ 274 (320)
T 4aa9_A 206 GGCQAILDTGTSVLFGPSSDILKIQMAIGATE----NRYGEFDV-NCGNL-----RSMPTVVFEIN-GRDYPLSPSAYTS 274 (320)
T ss_dssp TCEEEEECTTCSSEEEEHHHHHHHHHHTTCEE----CTTSCEEE-CGGGG-----GGCCCEEEEET-TEEEEECHHHHEE
T ss_pred CCcEEEEECCCCcEECCHHHHHHHHHHhCCcc----cCCCcEEE-eCCCC-----CcCceEEEEEC-CEEEEECHHHhcc
Confidence 14579999999999999999999999986553 12233333 78654 67899999997 8999999999998
Q ss_pred EecCCCceEE-EEEec-CCCceeecHhhhcceEEEEECCCCEEEEeeCC
Q 011042 448 PVDDAGTFCF-AFAPS-PSGLSIIGNIQQEGIQISFDGANGFVGFGPNV 494 (495)
Q Consensus 448 ~~~~~~~~Cl-~~~~~-~~~~~IlG~~fl~~~yvvfD~~~~~IGFa~~~ 494 (495)
+. +..|+ +|... .++.||||++|||++|+|||++++|||||+++
T Consensus 275 ~~---~~~C~~~i~~~~~~~~~ilG~~fl~~~y~vfD~~~~~igfA~a~ 320 (320)
T 4aa9_A 275 KD---QGFCTSGFQGDNNSELWILGDVFIREYYSVFDRANNRVGLAKAI 320 (320)
T ss_dssp EE---TTEEEESEEEETTCCCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred CC---CCeEEEEEEcCCCCCcEEEChHHhcceEEEEECCCCEEEEEecC
Confidence 63 57897 68775 34579999999999999999999999999975
No 14
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2
Probab=100.00 E-value=2.6e-56 Score=453.17 Aligned_cols=299 Identities=21% Similarity=0.363 Sum_probs=250.6
Q ss_pred ceeeeecccCCCcceEEEEEeeCCCCceeeEEEecCCCceeEecC--CCCCc-------ccCCCCccCCCCCCccccccC
Q 011042 141 FGTDVVSGMDQGSGEYFVRIGVGSPPRSQYMVIDSGSDIVWVQCQ--PCSQC-------YKQSDPVFDPADSASFSGVSC 211 (495)
Q Consensus 141 ~~~p~~~~~~~~~~~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~--~C~~C-------~~~~~~~fdps~SsT~~~~~C 211 (495)
+..|+.+ ++.+|+++|.||||+|++.|+|||||+++||+|. +|..| .++.++.|||++|+||+..
T Consensus 3 ~~~~l~~----~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~~~~~y~~~~SsT~~~~-- 76 (334)
T 1j71_A 3 VPTTLIN----EGPSYAADIVVGSNQQKQTVVIDTGSSDLWVVDTDAECQVTYSGQTNNFCKQEGTFDPSSSSSAQNL-- 76 (334)
T ss_dssp EEEEEEE----CSSSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSTTCCTTGGGSSCCBCGGGCTTCEEE--
T ss_pred eeEEEec----CCcEEEEEEEEcCCCcEEEEEEcCCCCCEEEecCCCCCcCcccccccccccCCCcCCcccCCCcccC--
Confidence 4567776 3689999999999999999999999999999976 77643 2346789999999999986
Q ss_pred CChhcccccCCCCCCCCceeeeeeCCCCeEEEEEEEEEEEECCEEeeeeEEEEEEecCCCCCCcceEEeeCCCCC-----
Q 011042 212 SSAVCDRLENAGCHAGRCRYEVSYGDGSYTKGTLALETLTIGRTVVKNVAIGCGHKNQGMFVGAAGLLGLGGGSM----- 286 (495)
Q Consensus 212 ~~~~C~~~~~~~C~~~~~~~~~~YgdGs~~~G~~~~Dtvt~g~~~~~~~~fG~~~~~~g~f~~~~GIlGLg~~~~----- 286 (495)
.|.|.+.|+||+.+.|.+++|+|+|++.+++++.|||++... ..+||||||++.+
T Consensus 77 ----------------~~~~~i~Yg~Gs~~~G~~~~D~v~~g~~~~~~~~fg~~~~~~----~~~GilGLg~~~~~~~~~ 136 (334)
T 1j71_A 77 ----------------NQDFSIEYGDLTSSQGSFYKDTVGFGGISIKNQQFADVTTTS----VDQGIMGIGFTADEAGYN 136 (334)
T ss_dssp ----------------EEEEEEEBTTSCEEEEEEEEEEEEETTEEEEEEEEEEEEEES----SSSCEEECSCGGGSSTTC
T ss_pred ----------------CCceEEEECCCCEEEEEEEEEEEEECCEEEccEEEEEEEecC----CCccEEEEcCCcccCccc
Confidence 589999999999889999999999999999999999999874 6799999999875
Q ss_pred ---Ccccccc---CccCCeEEEEeecCCCCCcceEEecccC---CCCCceEEecccCCCCCeEEEEEeeeeEecCeeecc
Q 011042 287 ---SLVGQLG---GQTGGAFSYCLVSRGTGSSGSLVFGREA---LPVGAAWVPLVRNPRAPSFYYVGLSGLGVGGMRIPI 357 (495)
Q Consensus 287 ---s~~~ql~---~~~~~~FS~cL~~~~~~~~G~L~fGg~~---~~~~~~~tpl~~~~~~~~~y~v~l~gisvgg~~l~i 357 (495)
+++.+|. .+.+++||+||.+... ..|.|+||+.| +.|++.|+|++ ...+|.|.+++|+||++.+..
T Consensus 137 ~~~~~~~~L~~qg~i~~~~Fs~~l~~~~~-~~G~l~fGg~d~~~~~g~l~~~p~~----~~~~~~v~l~~i~v~g~~~~~ 211 (334)
T 1j71_A 137 LYDNVPVTLKKQGIINKNAYSLYLNSEDA-STGKIIFGGVDNAKYTGTLTALPVT----SSVELRVHLGSINFDGTSVST 211 (334)
T ss_dssp CCCCHHHHHHHTTSCSSSEEEEECCCTTC-SEEEEEETEEETTSEEEEEEEEECC----CSSSCEEEEEEEEETTEEEEE
T ss_pred cCCcHHHHHHHCCCCCccEEEEEeCCCCC-CCeEEEEeeechHHccCceEEEEcc----CCCeEEEEEeEEEECCEeccC
Confidence 4555554 3567999999987533 38999999986 67899999995 345899999999999998753
Q ss_pred ccccccccccCCCcEEEccCCceeeecHHHHHHHHHHHHHhhCCCCCCCCcccccccccccCcccccccEEEEEEeCCCE
Q 011042 358 SEDLFRLTQMGDDGVVMDTGTAVTRLPTPAYEAFRDAFVAQTGNLPRASGVSIFDTCYNLSGFVSVRVPTVSFYFSGGPV 437 (495)
Q Consensus 358 ~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~gg~~ 437 (495)
...+||||||++++||+++|++|++++.+... ...+.+.+.+|+ .+|+|+|+|.+|++
T Consensus 212 -----------~~~~iiDSGTt~~~lP~~~~~~l~~~~~~~~~---~~~~~~~~~~C~--------~~p~i~f~f~~g~~ 269 (334)
T 1j71_A 212 -----------NADVVLDSGTTITYFSQSTADKFARIVGATWD---SRNEIYRLPSCD--------LSGDAVFNFDQGVK 269 (334)
T ss_dssp -----------EEEEEECTTCSSEEECHHHHHHHHHHHTCEEE---TTTTEEECSSSC--------CCSEEEEEESTTCE
T ss_pred -----------CccEEEeCCCCcEecCHHHHHHHHHHcCCccc---CCCceEEEEcCC--------CCCceEEEEcCCcE
Confidence 24599999999999999999999999987652 222223324784 37999999976899
Q ss_pred EEeCCCCeEEEecCCCceEE-EEEecCCCceeecHhhhcceEEEEECCCCEEEEeeCCC
Q 011042 438 LTLPASNFLIPVDDAGTFCF-AFAPSPSGLSIIGNIQQEGIQISFDGANGFVGFGPNVC 495 (495)
Q Consensus 438 ~~l~~~~y~~~~~~~~~~Cl-~~~~~~~~~~IlG~~fl~~~yvvfD~~~~~IGFa~~~C 495 (495)
++||+++|+++.. .+..|+ +|.+. +.||||++|||++|+|||++++|||||+++|
T Consensus 270 ~~i~~~~y~~~~~-~~~~C~~~i~~~--~~~iLG~~fl~~~y~vfD~~~~~igfA~~~~ 325 (334)
T 1j71_A 270 ITVPLSELILKDS-DSSICYFGISRN--DANILGDNFLRRAYIVYDLDDKTISLAQVKY 325 (334)
T ss_dssp EEEEGGGGEEECS-SSSCEEESEEEC--TTCEECHHHHTTEEEEEETTTTEEEEEEECC
T ss_pred EEECHHHheeecC-CCCeeEEEEeEC--CCcEEChHhhccEEEEEECCCCEEEEEecCC
Confidence 9999999999865 244697 56654 3599999999999999999999999999998
No 15
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans}
Probab=100.00 E-value=3.3e-56 Score=453.90 Aligned_cols=302 Identities=23% Similarity=0.353 Sum_probs=250.2
Q ss_pred ceeeeecccCCCcceEEEEEeeCCCCceeeEEEecCCCceeEecC--CCCCc-------ccCCCCccCCCCCCccccccC
Q 011042 141 FGTDVVSGMDQGSGEYFVRIGVGSPPRSQYMVIDSGSDIVWVQCQ--PCSQC-------YKQSDPVFDPADSASFSGVSC 211 (495)
Q Consensus 141 ~~~p~~~~~~~~~~~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~--~C~~C-------~~~~~~~fdps~SsT~~~~~C 211 (495)
+.+|+.+ ++++|+++|.||||+|++.|+|||||+++||+|. +|..| .++.++.|||++|+||+..
T Consensus 3 v~~~l~~----~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~~~~~y~~~~SsT~~~~-- 76 (342)
T 2qzx_A 3 VAVTLHN----EAITYTADITVGSDNQKLNVIVDTGSSDLWIPDSNVICIPKWRGDKGDFCKSAGSYSPASSRTSQNL-- 76 (342)
T ss_dssp EEEEEEE----CSSCEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSSSCCTTGGGTTCCBCGGGCTTCEEE--
T ss_pred eeEEEec----CCeEEEEEEEECCCCcEEEEEEeCCCCCeEEecCCCCccCccccCccccccCCCcCCcccCCCcccC--
Confidence 4567765 4579999999999999999999999999999866 67643 2346789999999999986
Q ss_pred CChhcccccCCCCCCCCceeeeeeCCCCeEEEEEEEEEEEECCEEeeeeEEEEEEecCCCCCCcceEEeeCCCCC-----
Q 011042 212 SSAVCDRLENAGCHAGRCRYEVSYGDGSYTKGTLALETLTIGRTVVKNVAIGCGHKNQGMFVGAAGLLGLGGGSM----- 286 (495)
Q Consensus 212 ~~~~C~~~~~~~C~~~~~~~~~~YgdGs~~~G~~~~Dtvt~g~~~~~~~~fG~~~~~~g~f~~~~GIlGLg~~~~----- 286 (495)
.|.|.+.|++|+.+.|.+++|+|+|++.+++++.|||++... ..+||||||++.+
T Consensus 77 ----------------~~~~~i~Yg~Gs~~~G~~~~D~v~~g~~~v~~~~fg~~~~~~----~~~GilGLg~~~~~~~~~ 136 (342)
T 2qzx_A 77 ----------------NTRFDIKYGDGSYAKGKLYKDTVGIGGVSVRDQLFANVWSTS----ARKGILGIGFQSGEATEF 136 (342)
T ss_dssp ----------------EEEEEEECTTSCEEEEEEEEEEEEETTEEEEEEEEEEEEEEC----SSSCEEECSCGGGCSSSS
T ss_pred ----------------CCcEEEEeCCCCeEEEEEEEEEEEECCEEecceEEEEEEecC----CCcCEEEEccccccCCCc
Confidence 589999999999889999999999999999999999999874 6799999999865
Q ss_pred ---Ccccccc---CccCCeEEEEeecCCCCCcceEEecccC---CCCCceEEecccCCCCCeEEEEEeeeeEecCeeecc
Q 011042 287 ---SLVGQLG---GQTGGAFSYCLVSRGTGSSGSLVFGREA---LPVGAAWVPLVRNPRAPSFYYVGLSGLGVGGMRIPI 357 (495)
Q Consensus 287 ---s~~~ql~---~~~~~~FS~cL~~~~~~~~G~L~fGg~~---~~~~~~~tpl~~~~~~~~~y~v~l~gisvgg~~l~i 357 (495)
+++.||. .+.+++||+||.+... ..|.|+||+.| +.|++.|+|++. ..+|.|.+++|+||++.+..
T Consensus 137 ~~~~~~~~L~~qg~i~~~~Fs~~l~~~~~-~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l~~i~v~g~~~~~ 211 (342)
T 2qzx_A 137 DYDNLPISLRNQGIIGKAAYSLYLNSAEA-STGQIIFGGIDKAKYSGSLVDLPITS----EKKLTVGLRSVNVRGRNVDA 211 (342)
T ss_dssp CCCCHHHHHHHTTSSSSSEEEEECCCTTC-SEEEEEETEEETTSBSSCCEEEECCC----SSSCEEEEEEEEETTEEEEE
T ss_pred cCccHHHHHHHCCCcCccEEEEEeCCCCC-CCeEEEECccchhhEecceEEEeccC----CceEEEEEeEEEECCEecCC
Confidence 4555554 3567999999987533 37999999986 788999999953 44899999999999998753
Q ss_pred ccccccccccCCCcEEEccCCceeeecHHHHHHHHHHHHHhhCCCCCCCCcccccccccccCcccccccEEEEEEeCCCE
Q 011042 358 SEDLFRLTQMGDDGVVMDTGTAVTRLPTPAYEAFRDAFVAQTGNLPRASGVSIFDTCYNLSGFVSVRVPTVSFYFSGGPV 437 (495)
Q Consensus 358 ~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~gg~~ 437 (495)
...+||||||++++||+++|++|++++.+.+...+...+.+.+ +|+ .+|+|+|+|++|++
T Consensus 212 -----------~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~~~~~~~~~~~~~-~C~--------~~p~i~f~f~~g~~ 271 (342)
T 2qzx_A 212 -----------NTNVLLDSGTTISYFTRSIVRNILYAIGAQMKFDSAGNKVYVA-DCK--------TSGTIDFQFGNNLK 271 (342)
T ss_dssp -----------EEEEEECTTCSSEEECHHHHHHHHHHHTCEEEECTTSCEEEEE-CTT--------CCCEEEEEETTTEE
T ss_pred -----------CcCEEEeCCCCCEEcCHHHHHHHHHHhCCeeeeccCCCcEEEE-ECC--------CCCcEEEEECCCcE
Confidence 2459999999999999999999999998764211112213333 684 37999999976899
Q ss_pred EEeCCCCeEEEec----CCCceEE-EEEecCCCceeecHhhhcceEEEEECCCCEEEEeeCCC
Q 011042 438 LTLPASNFLIPVD----DAGTFCF-AFAPSPSGLSIIGNIQQEGIQISFDGANGFVGFGPNVC 495 (495)
Q Consensus 438 ~~l~~~~y~~~~~----~~~~~Cl-~~~~~~~~~~IlG~~fl~~~yvvfD~~~~~IGFa~~~C 495 (495)
++||+++|+++.. +.+..|+ +|.+. +.||||++|||++|+|||++++|||||+++|
T Consensus 272 ~~i~~~~~~~~~~~~~~~~~~~C~~~i~~~--~~~iLG~~fl~~~y~vfD~~~~~igfA~~~~ 332 (342)
T 2qzx_A 272 ISVPVSEFLFQTYYTSGKPFPKCEVRIRES--EDNILGDNFLRSAYVVYNLDDKKISMAPVKY 332 (342)
T ss_dssp EEEEGGGGEECCBCTTSCBCSSEEESEEEC--SSCEECHHHHTTEEEEEETTTTEEEEEEBCC
T ss_pred EEEcHHHhcccccccCCCCCCccEEEEecC--CCcEeChHhhhcEEEEEECCCCEEEEEeeCC
Confidence 9999999999742 2346897 45554 3599999999999999999999999999998
No 16
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A
Probab=100.00 E-value=2.1e-56 Score=452.97 Aligned_cols=299 Identities=26% Similarity=0.494 Sum_probs=250.9
Q ss_pred CCcceEEEEEeeCCCCceeeEEEecCCCceeEecCCCCCcccCCCCccCCCCCCccccccCCChhcccccCCCCCCCCce
Q 011042 151 QGSGEYFVRIGVGSPPRSQYMVIDSGSDIVWVQCQPCSQCYKQSDPVFDPADSASFSGVSCSSAVCDRLENAGCHAGRCR 230 (495)
Q Consensus 151 ~~~~~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~~C~~~~~~ 230 (495)
+.+++|+++|.||||+|++.|+|||||+++||+|.+|..+.+..++.|||++|+||+.. +|.
T Consensus 9 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~y~~~~SsT~~~~------------------~~~ 70 (329)
T 1htr_B 9 YMDAAYFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQSQACTSHSRFNPSESSTYSTN------------------GQT 70 (329)
T ss_dssp GTTCCEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTSCCBCGGGCTTCEEE------------------EEE
T ss_pred EcCCEEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCcccCCCCcCCCccCCCeEEC------------------CcE
Confidence 46789999999999999999999999999999999997522235789999999999986 589
Q ss_pred eeeeeCCCCeEEEEEEEEEEEECCEEeeeeEEEEEEecCCC-C--CCcceEEeeCCCCCCcccc------c---cCccCC
Q 011042 231 YEVSYGDGSYTKGTLALETLTIGRTVVKNVAIGCGHKNQGM-F--VGAAGLLGLGGGSMSLVGQ------L---GGQTGG 298 (495)
Q Consensus 231 ~~~~YgdGs~~~G~~~~Dtvt~g~~~~~~~~fG~~~~~~g~-f--~~~~GIlGLg~~~~s~~~q------l---~~~~~~ 298 (495)
|.+.|++|+. .|.+++|+|+|++.+++++.|||++...+. | ...+||||||++.++...+ + +.+.++
T Consensus 71 ~~i~Yg~gs~-~G~~~~D~v~~g~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~qg~i~~~ 149 (329)
T 1htr_B 71 FSLQYGSGSL-TGFFGYDTLTVQSIQVPNQEFGLSENEPGTNFVYAQFDGIMGLAYPALSVDEATTAMQGMVQEGALTSP 149 (329)
T ss_dssp EEEEETTEEE-EEEEEEEEEEETTEEEEEEEEEEESSCSSGGGGGCSCCEEEECCCCSCCCTTCCSHHHHHHHTTCSSSS
T ss_pred EEEEeCCCCe-EEEEEeeeEEEcceEECceEEEEEEEccccccccCCCceEEecCCCcccccCCCCHHHHHHhcCCCCCC
Confidence 9999999987 899999999999999999999999987653 3 5689999999998775432 2 236689
Q ss_pred eEEEEeecCCCCCcceEEecccC---CCCCceEEecccCCCCCeEEEEEeeeeEecCeeeccccccccccccCCCcEEEc
Q 011042 299 AFSYCLVSRGTGSSGSLVFGREA---LPVGAAWVPLVRNPRAPSFYYVGLSGLGVGGMRIPISEDLFRLTQMGDDGVVMD 375 (495)
Q Consensus 299 ~FS~cL~~~~~~~~G~L~fGg~~---~~~~~~~tpl~~~~~~~~~y~v~l~gisvgg~~l~i~~~~~~~~~~g~~~~iiD 375 (495)
+||+||.+......|.|+||+.| +.+++.|+|+. ...||.|.+++|+||++.+... .....+|||
T Consensus 150 ~Fs~~L~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~----~~~~~~v~l~~i~v~~~~~~~~--------~~~~~aiiD 217 (329)
T 1htr_B 150 VFSVYLSNQQGSSGGAVVFGGVDSSLYTGQIYWAPVT----QELYWQIGIEEFLIGGQASGWC--------SEGCQAIVD 217 (329)
T ss_dssp EEEEEECSSCSSEEEEEEESSCCGGGEEEEEEEEEBC----SSSSCEEEECEEEETTEECCTT--------TTCEEEEEC
T ss_pred EEEEEEcCCCCCCCcEEEEcccCHHHcCCceEEEECC----CCceEEEEEeEEEECCceeeec--------CCCceEEEe
Confidence 99999988643237999999987 67899999995 3579999999999999876411 124679999
Q ss_pred cCCceeeecHHHHHHHHHHHHHhhCCCCCCCCcccccccccccCcccccccEEEEEEeCCCEEEeCCCCeEEEecCCCce
Q 011042 376 TGTAVTRLPTPAYEAFRDAFVAQTGNLPRASGVSIFDTCYNLSGFVSVRVPTVSFYFSGGPVLTLPASNFLIPVDDAGTF 455 (495)
Q Consensus 376 SGTt~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~gg~~~~l~~~~y~~~~~~~~~~ 455 (495)
|||++++||+++|++|++++++.. ...+.+.+ +|+.. ..+|+|+|+|+ |++++||+++|+++.. + .
T Consensus 218 SGTt~~~lp~~~~~~l~~~~~~~~----~~~g~~~~-~C~~~-----~~~P~i~f~f~-g~~~~i~~~~y~~~~~--g-~ 283 (329)
T 1htr_B 218 TGTSLLTVPQQYMSALLQATGAQE----DEYGQFLV-NCNSI-----QNLPSLTFIIN-GVEFPLPPSSYILSNN--G-Y 283 (329)
T ss_dssp TTCCSEEEEGGGHHHHHHHHTCEE----CTTSCEEE-CGGGG-----GGSCCEEEEET-TEEEEECHHHHEEECS--S-C
T ss_pred cCCccEECCHHHHHHHHHHhCCee----cCCCeEEE-eCCCc-----ccCCcEEEEEC-CEEEEECHHHhcccCC--C-E
Confidence 999999999999999999987653 12233323 78764 57899999996 8999999999999865 3 8
Q ss_pred EE-EEEecC-----CC-ceeecHhhhcceEEEEECCCCEEEEeeCC
Q 011042 456 CF-AFAPSP-----SG-LSIIGNIQQEGIQISFDGANGFVGFGPNV 494 (495)
Q Consensus 456 Cl-~~~~~~-----~~-~~IlG~~fl~~~yvvfD~~~~~IGFa~~~ 494 (495)
|+ +|++.+ ++ .||||++|||++|+|||++++|||||+++
T Consensus 284 C~~~~~~~~~~~~~~~~~~iLG~~fl~~~yvvfD~~~~~igfa~~~ 329 (329)
T 1htr_B 284 CTVGVEPTYLSSQNGQPLWILGDVFLRSYYSVYDLGNNRVGFATAA 329 (329)
T ss_dssp EEESEEEECCCCTTSSCEEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred EEEEEEECCCCCCCCCceEEEChHHhccEEEEEECCCCEEEEEeCC
Confidence 97 787643 34 79999999999999999999999999874
No 17
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A*
Probab=100.00 E-value=6.1e-56 Score=451.26 Aligned_cols=300 Identities=22% Similarity=0.389 Sum_probs=253.3
Q ss_pred ceeeeecccCCCcceEEEEEeeCCCCceeeEEEecCCCceeEe-----cCCCCCcccCCCCccCCCCCCccccccCCChh
Q 011042 141 FGTDVVSGMDQGSGEYFVRIGVGSPPRSQYMVIDSGSDIVWVQ-----CQPCSQCYKQSDPVFDPADSASFSGVSCSSAV 215 (495)
Q Consensus 141 ~~~p~~~~~~~~~~~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~-----~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~ 215 (495)
+++|+.+ ++++|+++|.||||+|++.|+|||||+++||+ |.+|..|. .++.|||++|+||+..
T Consensus 3 i~~~l~~----~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~~~C~~~~~C~--~~~~y~~~~SsT~~~~------ 70 (339)
T 3fv3_A 3 ISLSLIN----EGPSYASKVSVGSNKQQQTVIIDTGSSDFWVVDSNAQCGKGVDCK--SSGTFTPSSSSSYKNL------ 70 (339)
T ss_dssp EEEEEEE----CSSSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECTTCCTT--TTCCBCGGGCTTCEEE------
T ss_pred eeeEEEc----CCCEEEEEEEEcCCCcEEEEEEeCCCCceEEecCCCCCCCCCCCC--CCCcCCCccCcceeeC------
Confidence 4667775 35789999999999999999999999999998 66666776 4789999999999997
Q ss_pred cccccCCCCCCCCceeeeeeCCCCeEEEEEEEEEEEECCEEeeeeEEEEEEecCCCCCCcceEEeeCCCCCC--------
Q 011042 216 CDRLENAGCHAGRCRYEVSYGDGSYTKGTLALETLTIGRTVVKNVAIGCGHKNQGMFVGAAGLLGLGGGSMS-------- 287 (495)
Q Consensus 216 C~~~~~~~C~~~~~~~~~~YgdGs~~~G~~~~Dtvt~g~~~~~~~~fG~~~~~~g~f~~~~GIlGLg~~~~s-------- 287 (495)
.|.|.+.|++|+.+.|.+++|+|+|++.+++++.|||++...+ .+||||||++.++
T Consensus 71 ------------~~~~~i~Yg~gs~~~G~~~~D~v~~g~~~v~~~~fg~~~~~~~----~~GilGLg~~~~~~~~~~~~~ 134 (339)
T 3fv3_A 71 ------------GAAFTIRYGDGSTSQGTWGKDTVTINGVSITGQQIADVTQTSV----DQGILGIGYTSNEAVYDTSGR 134 (339)
T ss_dssp ------------EEEEEEECTTSCEEEEEEEEEEEEETTEEEEEEEEEEEEEESS----SSCEEECSCGGGCCCBCTTSC
T ss_pred ------------CceEEEEECCCceEEEEEEEEEEEECCEEECceEEEEEEecCC----CceeEEecCcccccccccccc
Confidence 5899999999988899999999999999999999999998863 6999999998764
Q ss_pred --------cccccc---CccCCeEEEEeecCCCCCcceEEecccC---CCCCceEEecccCCCCCeEEEEEeeeeEecCe
Q 011042 288 --------LVGQLG---GQTGGAFSYCLVSRGTGSSGSLVFGREA---LPVGAAWVPLVRNPRAPSFYYVGLSGLGVGGM 353 (495)
Q Consensus 288 --------~~~ql~---~~~~~~FS~cL~~~~~~~~G~L~fGg~~---~~~~~~~tpl~~~~~~~~~y~v~l~gisvgg~ 353 (495)
++.||. .+.+++||+||.+.... .|.|+||++| +.|++.|+|+. ...+|.|.+++|+||++
T Consensus 135 ~~~~~~~~~~~~L~~~g~i~~~~fsl~l~~~~~~-~G~l~fGg~d~~~~~g~l~~~p~~----~~~~~~v~l~~i~v~g~ 209 (339)
T 3fv3_A 135 QTTPNYDNVPVTLKKQGKIRTNAYSLYLNSPSAE-TGTIIFGGVDNAKYSGKLVAEQVT----SSQALTISLASVNLKGS 209 (339)
T ss_dssp BCSCCCCCHHHHHHHTTSCSSSEEEEECCCTTCS-EEEEEETEEETTSBSSCCEEEEBC----CSSSCEEEEEEEEESSC
T ss_pred ccCccCCcHHHHHHHCCCCCCceEEEEECCCCCC-CeEEEEeeechHHeecceEEEecc----cCccEEEEEEEEEECCE
Confidence 334443 36679999999876443 8999999977 78999999995 34589999999999999
Q ss_pred eeccccccccccccCCCcEEEccCCceeeecHHHHHHHHHHHHHhhCCCCCCCCcccccccccccCcccccccEEEEEEe
Q 011042 354 RIPISEDLFRLTQMGDDGVVMDTGTAVTRLPTPAYEAFRDAFVAQTGNLPRASGVSIFDTCYNLSGFVSVRVPTVSFYFS 433 (495)
Q Consensus 354 ~l~i~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~ 433 (495)
.+.. ...+||||||++++||+++|++|++++.+.........+.+.+ +|+. ..+|+|+|+|+
T Consensus 210 ~~~~-----------~~~~iiDSGtt~~~lP~~~~~~i~~~~~~~~~~~~~~~~~~~~-~C~~------~~~p~i~f~f~ 271 (339)
T 3fv3_A 210 SFSF-----------GDGALLDSGTTLTYFPSDFAAQLADKAGARLVQVARDQYLYFI-DCNT------DTSGTTVFNFG 271 (339)
T ss_dssp EEEE-----------EEEEEECTTBSSEEECHHHHHHHHHHHTCEEEEEETTEEEEEE-CTTC------CCCSEEEEEET
T ss_pred eecC-----------CccEEEeCCCCCEecCHHHHHHHHHHcCCEEccccccCceEEE-ecCC------CCCCcEEEEEC
Confidence 8753 2459999999999999999999999998664211012233333 7864 45899999997
Q ss_pred CCCEEEeCCCCeEEEecCCCceE-EEEEecCCCceeecHhhhcceEEEEECCCCEEEEeeCCC
Q 011042 434 GGPVLTLPASNFLIPVDDAGTFC-FAFAPSPSGLSIIGNIQQEGIQISFDGANGFVGFGPNVC 495 (495)
Q Consensus 434 gg~~~~l~~~~y~~~~~~~~~~C-l~~~~~~~~~~IlG~~fl~~~yvvfD~~~~~IGFa~~~C 495 (495)
+|++++||+++|+++.. +..| ++|.+ .+.||||++|||++|+|||++++|||||+++|
T Consensus 272 ~g~~~~v~~~~~~~~~~--~~~C~~~i~~--~~~~ilG~~fl~~~y~vfD~~~~~igfA~~~~ 330 (339)
T 3fv3_A 272 NGAKITVPNTEYVYQNG--DGTCLWGIQP--SDDTILGDNFLRHAYLLYNLDANTISIAQVKY 330 (339)
T ss_dssp TSCEEEEEGGGGEEECS--SSCEEESEEE--CSSCEECHHHHTTEEEEEETTTTEEEEEEBCC
T ss_pred CCCEEEECHHHheeeCC--CCeEEEEEEe--CCcEEeChHHHhCEEEEEECCCCEEEEEecCC
Confidence 68999999999999864 4679 58887 45799999999999999999999999999998
No 18
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A
Probab=100.00 E-value=1.4e-55 Score=455.65 Aligned_cols=321 Identities=25% Similarity=0.467 Sum_probs=259.3
Q ss_pred ceeeeecccCCCcceEEEEEeeCCCCceeeEEEecCCCceeEecCCCCCcccCCCCccCCCCCCccccccCCChhccccc
Q 011042 141 FGTDVVSGMDQGSGEYFVRIGVGSPPRSQYMVIDSGSDIVWVQCQPCSQCYKQSDPVFDPADSASFSGVSCSSAVCDRLE 220 (495)
Q Consensus 141 ~~~p~~~~~~~~~~~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~ 220 (495)
+..|+.. ...+.+|+++|+|||| |+|||||+++||+|.+| .+|+.++|.++.|....
T Consensus 3 ~~~pv~~--~~~~~~Y~~~i~iGtP-----v~~DTGSs~lWv~c~~~----------------~~~~~~~C~s~~C~~~~ 59 (381)
T 1t6e_X 3 VLAPVTK--DPATSLYTIPFHDGAS-----LVLDVAGPLVWSTCDGG----------------QPPAEIPCSSPTCLLAN 59 (381)
T ss_dssp EEEEEEE--CTTTCCEEEEEETTEE-----EEEETTCCCEEECCCTT----------------CCCCCCBTTSHHHHHHH
T ss_pred eEEeEEe--cCCCcEEEEEEeCCCE-----EEEECCCCceEEeCCCC----------------CCCCccCCCCchhcccc
Confidence 3467764 3677899999999998 99999999999998865 13667889999997642
Q ss_pred ---CCCCCC---------CCc-eeeeeeCCCCeEEEEEEEEEEEECC----EEeeee----EEEEEEec--CCCCCCcce
Q 011042 221 ---NAGCHA---------GRC-RYEVSYGDGSYTKGTLALETLTIGR----TVVKNV----AIGCGHKN--QGMFVGAAG 277 (495)
Q Consensus 221 ---~~~C~~---------~~~-~~~~~YgdGs~~~G~~~~Dtvt~g~----~~~~~~----~fG~~~~~--~g~f~~~~G 277 (495)
...|.. ..| .|.+.|+||+.+.|.+++|+|+|++ ..++++ .|||++.. .+.+..++|
T Consensus 60 ~~~~~sc~~~~~~~~~~~~~c~~f~i~YgdGs~~~G~l~~Dtv~ig~~~g~~~v~~~~~~~~Fg~~~~~~~~~~~~~~dG 139 (381)
T 1t6e_X 60 AYPAPGCPAPSCGSDKHDKPCTAYPYNPVSGACAAGSLSHTRFVANTTDGSKPVSKVNVGVLAACAPSKLLASLPRGSTG 139 (381)
T ss_dssp SSCCTTCCCCCC------CBCEECCBCTTTCCBCCEEEEEEEEEEEEESSSSEEEEEEEEEEEEECCGGGGTTSCTTEEE
T ss_pred CCCCCCCCCccCCcCcCCCccccccccccCCceeeEEEEEEEEEeeccCCCccccceeeeeEeecCcccccCCCCCCCce
Confidence 235642 356 5999999999889999999999974 466665 56999886 444478999
Q ss_pred EEeeCCCCCCccccccC--ccCCeEEEEeecCCCCCcceEEecccCC-----CCCceEEecccCCCCCeEEEEEeeeeEe
Q 011042 278 LLGLGGGSMSLVGQLGG--QTGGAFSYCLVSRGTGSSGSLVFGREAL-----PVGAAWVPLVRNPRAPSFYYVGLSGLGV 350 (495)
Q Consensus 278 IlGLg~~~~s~~~ql~~--~~~~~FS~cL~~~~~~~~G~L~fGg~~~-----~~~~~~tpl~~~~~~~~~y~v~l~gisv 350 (495)
|||||++++++++|+.. +.+++||+||.+. ..|.|+||+.+. .+++.|+|++.++.. .+|+|.|++|+|
T Consensus 140 IlGLg~~~~s~~~ql~~~~~~~~~FS~~L~~~---~~G~l~fGg~~~~~~~~~g~l~~tPl~~~~~~-~~y~v~l~~i~v 215 (381)
T 1t6e_X 140 VAGLANSGLALPAQVASAQKVANRFLLCLPTG---GPGVAIFGGGPVPWPQFTQSMPYTPLVTKGGS-PAHYISARSIVV 215 (381)
T ss_dssp EEECSSSTTSHHHHHHHHHTCCSEEEEECCSS---SCEEEEESCCSCSCHHHHTTCCEEECBCCTTC-CSCEECEEEEEE
T ss_pred EEEeCCCcchhHHHHhhhcccCceEEEEeCCC---CCeeEEeCCcccccccccCcceeeccccCCCC-cceEEEEEEEEE
Confidence 99999999999999865 4579999999875 379999999763 689999999876433 356799999999
Q ss_pred cCeeeccccccccccccCCCcEEEccCCceeeecHHHHHHHHHHHHHhhC-------CCCCC-CCcccccccccccCcc-
Q 011042 351 GGMRIPISEDLFRLTQMGDDGVVMDTGTAVTRLPTPAYEAFRDAFVAQTG-------NLPRA-SGVSIFDTCYNLSGFV- 421 (495)
Q Consensus 351 gg~~l~i~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~~~~l~~~~~~~~~-------~~~~~-~~~~~~~~C~~~~~~~- 421 (495)
|++.+.++...|. ++++||||||++++||+++|++|++++.+.+. .+++. .....+++||+.++..
T Consensus 216 g~~~~~~~~~~~~-----~~~~iiDTGTtl~~lp~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~C~~~~~~~~ 290 (381)
T 1t6e_X 216 GDTRVPVPEGALA-----TGGVMLSTRLPYVLLRPDVYRPLMDAFTKALAAQHANGAPVARAVEAVAPFGVCYDTKTLGN 290 (381)
T ss_dssp TTEECCCCTTCSC-----TTCEEECSSCSSEEECHHHHHHHHHHHHHHHHHC-------CCEECCCTTCSCEEEGGGCCE
T ss_pred cCEEecCCHHHcc-----CCCEEEECCCccEEeCHHHHHHHHHHHHHhhcccccccccccccCCCCCCCCccCCCCCCcc
Confidence 9999987766663 46799999999999999999999999998763 23332 2223346899876432
Q ss_pred ---cccccEEEEEEeCCCEEEeCCCCeEEEecCCCceEEEEEecCC--------CceeecHhhhcceEEEEECCCCEEEE
Q 011042 422 ---SVRVPTVSFYFSGGPVLTLPASNFLIPVDDAGTFCFAFAPSPS--------GLSIIGNIQQEGIQISFDGANGFVGF 490 (495)
Q Consensus 422 ---~~~~P~i~f~f~gg~~~~l~~~~y~~~~~~~~~~Cl~~~~~~~--------~~~IlG~~fl~~~yvvfD~~~~~IGF 490 (495)
...+|+|+|+|+||++|+|++++|+++.. .+..|++|++.+. +.||||+.|||++|+|||++++||||
T Consensus 291 ~~~~~~~P~i~f~f~gg~~~~l~~~~y~~~~~-~~~~Cl~~~~~~~~~~~~~~~~~~ILGd~fl~~~yvvfD~~~~riGf 369 (381)
T 1t6e_X 291 NLGGYAVPNVQLGLDGGSDWTMTGKNSMVDVK-QGTACVAFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFDMEKKRLGF 369 (381)
T ss_dssp ETTEECCCCEEEEETTSCEEEECHHHHEEEEE-TTEEEESEEECCCCC------CSEEECHHHHTTEEEEEETTTTEEEE
T ss_pred cccCCcCCeEEEEECCCcEEEeCCCeEEEEcC-CCeEEEEEEcCCCcccccCCCceEEEChHHhCCcEEEEECCCCEEEE
Confidence 14789999999867999999999999875 4678999987643 57999999999999999999999999
Q ss_pred eeCC
Q 011042 491 GPNV 494 (495)
Q Consensus 491 a~~~ 494 (495)
|++.
T Consensus 370 A~~~ 373 (381)
T 1t6e_X 370 SRLP 373 (381)
T ss_dssp EECC
T ss_pred eccc
Confidence 9864
No 19
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A*
Probab=100.00 E-value=1.6e-55 Score=454.02 Aligned_cols=301 Identities=20% Similarity=0.330 Sum_probs=254.2
Q ss_pred ceeeeecccCCCcceEEEEEeeCCCCceeeEEEecCCCceeEecCCCCCcccCCCCccCCCCCCccccccCCChhccccc
Q 011042 141 FGTDVVSGMDQGSGEYFVRIGVGSPPRSQYMVIDSGSDIVWVQCQPCSQCYKQSDPVFDPADSASFSGVSCSSAVCDRLE 220 (495)
Q Consensus 141 ~~~p~~~~~~~~~~~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~ 220 (495)
...|+.. +.+++|+++|.||||+|++.|+|||||+++||+|.+|..+.+..++.|||++|+||+..
T Consensus 52 ~~~pl~~---~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~y~~~~SsT~~~~----------- 117 (375)
T 1miq_A 52 DVIELDD---VANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCNSSGCSIKNLYDSSKSKSYEKD----------- 117 (375)
T ss_dssp BCCCGGG---TBCEEEECCCEETTTTEECCEEEETTCCCEEEEBTTCCSSGGGGSCCBCGGGCTTCEEE-----------
T ss_pred ceEEccc---CCCCEEEEEEEECCCCeEEEEEEeCCCcceEEccCCCCcccccCCCcCCCccCCceEEC-----------
Confidence 3467764 56789999999999999999999999999999999997433346789999999999986
Q ss_pred CCCCCCCCceeeeeeCCCCeEEEEEEEEEEEECCEEeeeeEEEEEEe----cCCCC--CCcceEEeeCCCCCCcccc---
Q 011042 221 NAGCHAGRCRYEVSYGDGSYTKGTLALETLTIGRTVVKNVAIGCGHK----NQGMF--VGAAGLLGLGGGSMSLVGQ--- 291 (495)
Q Consensus 221 ~~~C~~~~~~~~~~YgdGs~~~G~~~~Dtvt~g~~~~~~~~fG~~~~----~~g~f--~~~~GIlGLg~~~~s~~~q--- 291 (495)
+|.|.+.|++|+ +.|.+++|+|+|++..+++ .|||++. .. .| ...+||||||++.++...+
T Consensus 118 -------~~~~~i~Yg~Gs-~~G~~~~Dtv~ig~~~v~~-~Fg~~~~~~~~~~-~f~~~~~dGilGLg~~~~s~~~~~~~ 187 (375)
T 1miq_A 118 -------GTKVDITYGSGT-VKGFFSKDLVTLGHLSMPY-KFIEVTDTDDLEP-IYSSVEFDGILGLGWKDLSIGSIDPI 187 (375)
T ss_dssp -------EEEEEEEETTEE-EEEEEEEEEEEETTEEEEE-EEEEEEECGGGTT-HHHHSCCCEEEECSSCCTTCSSCCCH
T ss_pred -------CcEEEEEeCCCe-EEEEEEEEEEEEcCceECc-EEEEEEecccccc-ccccCCCceEEeCCCCcccccCCCCH
Confidence 589999999999 5899999999999999999 9999998 44 34 5789999999998875432
Q ss_pred ---c---cCccCCeEEEEeecCCCCCcceEEecccC---CCCCceEEecccCCCCCeEEEEEeeeeEecCeeeccccccc
Q 011042 292 ---L---GGQTGGAFSYCLVSRGTGSSGSLVFGREA---LPVGAAWVPLVRNPRAPSFYYVGLSGLGVGGMRIPISEDLF 362 (495)
Q Consensus 292 ---l---~~~~~~~FS~cL~~~~~~~~G~L~fGg~~---~~~~~~~tpl~~~~~~~~~y~v~l~gisvgg~~l~i~~~~~ 362 (495)
+ +.+..++||+||.+.+. ..|.|+||++| +.|++.|+|+. ..+||.|.++ |+||++.+ .
T Consensus 188 ~~~l~~qg~i~~~~FS~~L~~~~~-~~G~l~fGg~d~~~~~g~l~~~p~~----~~~~w~v~l~-i~v~g~~~--~---- 255 (375)
T 1miq_A 188 VVELKNQNKIDNALFTFYLPVHDV-HAGYLTIGGIEEKFYEGNITYEKLN----HDLYWQIDLD-VHFGKQTM--E---- 255 (375)
T ss_dssp HHHHHHTTSSSSSEEEEECCTTCT-TEEEEEESSCCGGGEEEEEEEEEBS----SSSSSEEEEE-EEETTEEE--E----
T ss_pred HHHHHhccCcCCCEEEEEecCCCC-CCeEEEEcccCHHHcCCceEEEecC----CCceEEEEEE-EEECCEEc--c----
Confidence 2 23668999999998643 48999999988 67899999994 4579999999 99999886 1
Q ss_pred cccccCCCcEEEccCCceeeecHHHHHHHHHHHHHhhCCCCCCCCcccccccccccCcccccccEEEEEEeCCCEEEeCC
Q 011042 363 RLTQMGDDGVVMDTGTAVTRLPTPAYEAFRDAFVAQTGNLPRASGVSIFDTCYNLSGFVSVRVPTVSFYFSGGPVLTLPA 442 (495)
Q Consensus 363 ~~~~~g~~~~iiDSGTt~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~gg~~~~l~~ 442 (495)
...+||||||++++||+++|++|++++++.. +...+.+.+ +|+. ..+|+|+|+|+ |++++||+
T Consensus 256 ------~~~aiiDSGTs~~~lP~~~~~~l~~~~~~~~---~~~~g~~~~-~C~~------~~~P~i~f~f~-g~~~~l~~ 318 (375)
T 1miq_A 256 ------KANVIVDSGTTTITAPSEFLNKFFANLNVIK---VPFLPFYVT-TCDN------KEMPTLEFKSA-NNTYTLEP 318 (375)
T ss_dssp ------EEEEEECTTBSSEEECHHHHHHHHHHHTCEE---CTTSSCEEE-ETTC------TTCCCEEEECS-SCEEEECG
T ss_pred ------cceEEecCCCccEEcCHHHHHHHHHHhCCcc---cCCCCeEEE-ECCC------CCCCcEEEEEC-CEEEEECH
Confidence 4569999999999999999999999997643 333343333 7864 46899999996 89999999
Q ss_pred CCeEEEecC-CCceEE-EEEecCC--CceeecHhhhcceEEEEECCCCEEEEeeCC
Q 011042 443 SNFLIPVDD-AGTFCF-AFAPSPS--GLSIIGNIQQEGIQISFDGANGFVGFGPNV 494 (495)
Q Consensus 443 ~~y~~~~~~-~~~~Cl-~~~~~~~--~~~IlG~~fl~~~yvvfD~~~~~IGFa~~~ 494 (495)
++|+++... +...|+ +|++.+. +.||||++|||++|+|||++++|||||+++
T Consensus 319 ~~yi~~~~~~g~~~C~~~~~~~~~~~~~~ILG~~fl~~~yvvfD~~~~riGfA~~~ 374 (375)
T 1miq_A 319 EYYMNPILEVDDTLCMITMLPVDIDSNTFILGDPFMRKYFTVFDYDKESVGFAIAK 374 (375)
T ss_dssp GGSEEESSSSSCSEEEESEEECCSSSSEEEECHHHHHHEEEEEETTTTEEEEEEEC
T ss_pred HHhEeeccCCCCCeEEEEEEECCCCCCcEEECHHHhccEEEEEECCCCEEEEEEcC
Confidence 999998753 346897 8988653 679999999999999999999999999864
No 20
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A*
Probab=100.00 E-value=2.7e-55 Score=446.95 Aligned_cols=301 Identities=23% Similarity=0.362 Sum_probs=246.9
Q ss_pred ceeeeecccCCCcceEEEEEeeCCCCceeeEEEecCCCceeEecCC--CC---------CcccCCCCccCCCCCCccccc
Q 011042 141 FGTDVVSGMDQGSGEYFVRIGVGSPPRSQYMVIDSGSDIVWVQCQP--CS---------QCYKQSDPVFDPADSASFSGV 209 (495)
Q Consensus 141 ~~~p~~~~~~~~~~~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~--C~---------~C~~~~~~~fdps~SsT~~~~ 209 (495)
+.+|+.+ ++++|+++|.||||+|++.|++||||+++||+|.. |. .|. .++.|||++|+||+..
T Consensus 3 v~~~l~~----~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~--~~~~y~~~~SsT~~~~ 76 (342)
T 3pvk_A 3 VPVTLHN----EQVTYAADITVGSNNQKLNVIVDTGSSDLWVPDVNVDCQVTYSDQTADFCK--QKGTYDPSGSSASQDL 76 (342)
T ss_dssp EEEEEEE----CSSSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSTTCCTTGGG--TTCCBCGGGCTTCEEE
T ss_pred cceEEec----CCcEEEEEEEEcCCCcEEEEEEECCCcceEEEcCCCCCcccccccccCCCC--CCCcCCCccCcceeec
Confidence 3455554 46899999999999999999999999999998653 53 453 5789999999999997
Q ss_pred cCCChhcccccCCCCCCCCceeeeeeCCCCeEEEEEEEEEEEECCEEeeeeEEEEEEecCCCCCCcceEEeeCCCCC---
Q 011042 210 SCSSAVCDRLENAGCHAGRCRYEVSYGDGSYTKGTLALETLTIGRTVVKNVAIGCGHKNQGMFVGAAGLLGLGGGSM--- 286 (495)
Q Consensus 210 ~C~~~~C~~~~~~~C~~~~~~~~~~YgdGs~~~G~~~~Dtvt~g~~~~~~~~fG~~~~~~g~f~~~~GIlGLg~~~~--- 286 (495)
.|.|.+.|++|+.+.|.+++|+|+|++..++++.|||++... ..+||||||++.+
T Consensus 77 ------------------~~~~~i~Yg~gs~~~G~~~~D~v~ig~~~v~~~~fg~~~~~~----~~~GilGLg~~~~~~~ 134 (342)
T 3pvk_A 77 ------------------NTPFKIGYGDGSSSQGTLYKDTVGFGGVSIKNQVLADVDSTS----IDQGILGVGYKTNEAG 134 (342)
T ss_dssp ------------------EEEEEEECSSSCEEEEEEEEEEEEETTEEEEEEEEEEEEEES----SSSCEEECSCGGGCSS
T ss_pred ------------------CCeEEEEecCCCeEEEEEEEEEEEECCEEecceEEEEEEccC----CCccEEEecCcccccc
Confidence 589999999999789999999999999999999999999875 5799999999874
Q ss_pred ----Ccccccc---CccCCeEEEEeecCCCCCcceEEecccC---CCCCceEEecccCCCCCeEEEEEeeeeEecCeeec
Q 011042 287 ----SLVGQLG---GQTGGAFSYCLVSRGTGSSGSLVFGREA---LPVGAAWVPLVRNPRAPSFYYVGLSGLGVGGMRIP 356 (495)
Q Consensus 287 ----s~~~ql~---~~~~~~FS~cL~~~~~~~~G~L~fGg~~---~~~~~~~tpl~~~~~~~~~y~v~l~gisvgg~~l~ 356 (495)
+++.||. .+.+++||+||.+.... .|.|+||++| +.|++.|+|++ ...+|.|.+++|+||++.+.
T Consensus 135 ~~~~~~~~~L~~qg~i~~~~fs~~l~~~~~~-~G~l~fGg~d~~~~~g~l~~~p~~----~~~~~~v~l~~i~v~g~~~~ 209 (342)
T 3pvk_A 135 GSYDNVPVTLKKQGVIAKNAYSLYLNSPDAA-TGQIIFGGVDNAKYSGSLIALPVT----SDRELRISLGSVEVSGKTIN 209 (342)
T ss_dssp CSSCCHHHHHHHTTSSSSSEEEEECCCTTCS-EEEEEETEEETTSBSSCCEEEECC----CSSSCEEEEEEEEETTEEEE
T ss_pred ccCCcHHHHHHhcCCCCCceEEEEeCCCCCC-CcEEEECccCccceeeeeEEeecC----ccceEEEEEeEEEECCEEec
Confidence 4555554 36679999999875443 7999999987 78999999995 34589999999999999886
Q ss_pred cccccccccccCCCcEEEccCCceeeecHHHHHHHHHHHHHhhCCCCCCCCcccccccccccCcccccccEEEEEEeCCC
Q 011042 357 ISEDLFRLTQMGDDGVVMDTGTAVTRLPTPAYEAFRDAFVAQTGNLPRASGVSIFDTCYNLSGFVSVRVPTVSFYFSGGP 436 (495)
Q Consensus 357 i~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~gg~ 436 (495)
.+ ...+||||||++++||+++|++|++++++.........+.+. .+|+ ..|+|+|+|++|+
T Consensus 210 ~~----------~~~~iiDSGtt~~~lP~~~~~~i~~~~~~~~~~~~~~~~~~~-~~C~--------~~p~i~f~f~~g~ 270 (342)
T 3pvk_A 210 TD----------NVDVLLDSGTTITYLQQDLADQIIKAFNGKLTQDSNGNSFYE-VDCN--------LSGDVVFNFSKNA 270 (342)
T ss_dssp EE----------EEEEEECTTCSSEEECHHHHHHHHHHTTCEEEECTTSCEEEE-ECSC--------CCSEEEEEESTTC
T ss_pred CC----------CceEEEeCCCCCeecCHHHHHHHHHHcCCeecccCCCceEEE-EecC--------CCCceEEEECCCC
Confidence 43 356999999999999999999999999776421111111122 3784 3599999998789
Q ss_pred EEEeCCCCeEEEecC-CC---ceEE-EEEecCCCceeecHhhhcceEEEEECCCCEEEEeeCCC
Q 011042 437 VLTLPASNFLIPVDD-AG---TFCF-AFAPSPSGLSIIGNIQQEGIQISFDGANGFVGFGPNVC 495 (495)
Q Consensus 437 ~~~l~~~~y~~~~~~-~~---~~Cl-~~~~~~~~~~IlG~~fl~~~yvvfD~~~~~IGFa~~~C 495 (495)
+++||+++|+++... .+ ..|+ +|.+. +.||||++|||++|+|||++++|||||+++|
T Consensus 271 ~~~vp~~~~~~~~~~~~g~~~~~C~~~i~~~--~~~ilG~~fl~~~y~vfD~~~~~igfA~~~~ 332 (342)
T 3pvk_A 271 KISVPASEFAASLQGDDGQPYDKCQLLFDVN--DANILGDNFLRSAYIVYDLDDNEISLAQVKY 332 (342)
T ss_dssp EEEEEGGGGEEC----------CEEESEEEC--TTCEECHHHHTTEEEEEETTTTEEEEEEBCC
T ss_pred EEEEcHHHheeeccccCCCcCCeeEEEEeeC--CCeEeCHHHHhcEEEEEECCCCEEEEEecCC
Confidence 999999999997421 22 6896 66653 5799999999999999999999999999998
No 21
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ...
Probab=100.00 E-value=1.5e-55 Score=448.63 Aligned_cols=305 Identities=22% Similarity=0.398 Sum_probs=256.3
Q ss_pred cceeeeecccCCCcceEEEEEeeCCCCceeeEEEecCCCceeEecCCCC----CcccCCCCccCCCCCCccccccCCChh
Q 011042 140 DFGTDVVSGMDQGSGEYFVRIGVGSPPRSQYMVIDSGSDIVWVQCQPCS----QCYKQSDPVFDPADSASFSGVSCSSAV 215 (495)
Q Consensus 140 ~~~~p~~~~~~~~~~~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~C~----~C~~~~~~~fdps~SsT~~~~~C~~~~ 215 (495)
...+|+.+ +.+.+|+++|.||||+|++.|++||||+++||+|.+|. .|. .++.|||++|+||+..
T Consensus 7 ~~~~~l~n---~~d~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~--~~~~y~~~~SsT~~~~------ 75 (341)
T 3k1w_A 7 TSSVILTN---YMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACV--YHKLFDASDSSSYKHN------ 75 (341)
T ss_dssp CEEEEEEE---ETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTSCTTCHHHH--TSCCBCGGGCTTCEEE------
T ss_pred CccccceE---ccCCEEEEEEEEcCCCcEEEEEEeCCCcceEEccCCCCCCCCccc--CCCCCCCCcCcCeeEC------
Confidence 45678876 56789999999999999999999999999999999997 564 5789999999999985
Q ss_pred cccccCCCCCCCCceeeeeeCCCCeEEEEEEEEEEEECCEEeeeeEEEEEEecCCC-C--CCcceEEeeCCCCCCc----
Q 011042 216 CDRLENAGCHAGRCRYEVSYGDGSYTKGTLALETLTIGRTVVKNVAIGCGHKNQGM-F--VGAAGLLGLGGGSMSL---- 288 (495)
Q Consensus 216 C~~~~~~~C~~~~~~~~~~YgdGs~~~G~~~~Dtvt~g~~~~~~~~fG~~~~~~g~-f--~~~~GIlGLg~~~~s~---- 288 (495)
.|.|.+.|++|+ +.|.+++|+|+|++..+ ++.|||++...+. | ...+||||||++.++.
T Consensus 76 ------------~~~~~i~Yg~gs-~~G~~~~D~v~ig~~~v-~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~ 141 (341)
T 3k1w_A 76 ------------GTELTLRYSTGT-VSGFLSQDIITVGGITV-TQMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVT 141 (341)
T ss_dssp ------------EEEEEEEETTEE-EEEEEEEEEEEETTEEE-EEEEEEEEECCHHHHTTCSSSEEEECSCGGGCGGGCC
T ss_pred ------------CCEEEEEECCcE-EEEEEEEEEEEECCcee-eEEEEEEEEccccccccCCcceEEECCchhhcccCCC
Confidence 589999999998 59999999999999999 9999999988653 3 5679999999988763
Q ss_pred --cccc---cCccCCeEEEEeecCCC---CCcceEEecccC---CCCCceEEecccCCCCCeEEEEEeeeeEecCeeecc
Q 011042 289 --VGQL---GGQTGGAFSYCLVSRGT---GSSGSLVFGREA---LPVGAAWVPLVRNPRAPSFYYVGLSGLGVGGMRIPI 357 (495)
Q Consensus 289 --~~ql---~~~~~~~FS~cL~~~~~---~~~G~L~fGg~~---~~~~~~~tpl~~~~~~~~~y~v~l~gisvgg~~l~i 357 (495)
+.++ +.+..++||+||.+... ...|.|+||++| +.|++.|+|+. ...+|.|.+++|+||++.+..
T Consensus 142 ~~~~~l~~qg~i~~~~Fs~~l~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~----~~~~w~v~l~~i~v~~~~~~~ 217 (341)
T 3k1w_A 142 PIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLI----KTGVWQIQMKGVSVGSSTLLC 217 (341)
T ss_dssp CHHHHHHHHTCBSSSEEEEEECCCC-----CCEEEEESSCCGGGEEEEEEEEECS----STTSCEEEECCEEETTEEEEC
T ss_pred CHHHHHHHCCCCCCCEEEEEEeCCCCcCCCCCCEEEECccChHHccCceEEEecC----CCCEEEEEEeEEEECCEEeec
Confidence 2333 33678999999988641 137999999987 67899999995 467999999999999987543
Q ss_pred ccccccccccCCCcEEEccCCceeeecHHHHHHHHHHHHHhhCCCCCCCCcccccccccccCcccccccEEEEEEeCCCE
Q 011042 358 SEDLFRLTQMGDDGVVMDTGTAVTRLPTPAYEAFRDAFVAQTGNLPRASGVSIFDTCYNLSGFVSVRVPTVSFYFSGGPV 437 (495)
Q Consensus 358 ~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~gg~~ 437 (495)
+. ...+||||||++++||++++++|++++++.. ...+ +.+ +|... ..+|+|+|+|+ |++
T Consensus 218 ~~---------~~~~iiDsGtt~~~lP~~~~~~i~~~~~~~~----~~~g-~~~-~C~~~-----~~~p~i~f~f~-g~~ 276 (341)
T 3k1w_A 218 ED---------GCLALVDTGASYISGSTSSIEKLMEALGAKK----RLFD-YVV-KCNEG-----PTLPDISFHLG-GKE 276 (341)
T ss_dssp TT---------CEEEEECTTCSSEEECHHHHHHHHHHHTCEE----CSSC-EEE-EGGGG-----GGCCCEEEEET-TEE
T ss_pred CC---------CCEEEEECCCChhcCCHHHHHHHHHHcCCee----cCCC-eEE-eCCCC-----CcCCcEEEEEC-CEE
Confidence 21 4579999999999999999999999997653 1224 333 68653 67899999997 899
Q ss_pred EEeCCCCeEEEecC-CCceEE-EEEec-----CCCceeecHhhhcceEEEEECCCCEEEEeeCC
Q 011042 438 LTLPASNFLIPVDD-AGTFCF-AFAPS-----PSGLSIIGNIQQEGIQISFDGANGFVGFGPNV 494 (495)
Q Consensus 438 ~~l~~~~y~~~~~~-~~~~Cl-~~~~~-----~~~~~IlG~~fl~~~yvvfD~~~~~IGFa~~~ 494 (495)
++|++++|+++... .+..|+ +|... ..+.||||++|||++|+|||++++|||||+++
T Consensus 277 ~~l~~~~~~~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~a~ 340 (341)
T 3k1w_A 277 YTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGFALAR 340 (341)
T ss_dssp EEECHHHHBCCSCCCTTSEEEBSEEECCCCTTTCSCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred EEECHHHheeEccCCCCCeEEeEEEecccCCCCCCeEEEChHHhcceEEEEeCCCCEEEEEECC
Confidence 99999999987643 367897 68763 34579999999999999999999999999875
No 22
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ...
Probab=100.00 E-value=1e-55 Score=463.71 Aligned_cols=301 Identities=18% Similarity=0.284 Sum_probs=252.2
Q ss_pred ceeeeecccCCCcceEEEEEeeCCCCceeeEEEecCCCceeEecCCCCCcccCCCCccCCCCCCccccccCCChhccccc
Q 011042 141 FGTDVVSGMDQGSGEYFVRIGVGSPPRSQYMVIDSGSDIVWVQCQPCSQCYKQSDPVFDPADSASFSGVSCSSAVCDRLE 220 (495)
Q Consensus 141 ~~~p~~~~~~~~~~~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~ 220 (495)
...|+.. +.+.+|+++|+||||+|++.|++||||+++||+|.+|..+.++.++.|||++|+||+..
T Consensus 128 ~~~~L~n---~~~~~Y~~~I~IGTP~Q~~~vi~DTGSs~lWV~~~~C~~~~C~~~~~ydps~SsT~~~~----------- 193 (453)
T 2bju_A 128 DNIELVD---FQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEKD----------- 193 (453)
T ss_dssp EEEEEEE---ETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSTTGGGSCCBCGGGCTTCEEE-----------
T ss_pred CceeeEe---cCCCEEEEEEEECCCCeEEEEEEECCCcceEEeccCCCccccCCCCcCCCccCCceeEC-----------
Confidence 4567764 56789999999999999999999999999999999997444456789999999999986
Q ss_pred CCCCCCCCceeeeeeCCCCeEEEEEEEEEEEECCEEeeeeEEEEEEecC--CC-C--CCcceEEeeCCCCCCcccc----
Q 011042 221 NAGCHAGRCRYEVSYGDGSYTKGTLALETLTIGRTVVKNVAIGCGHKNQ--GM-F--VGAAGLLGLGGGSMSLVGQ---- 291 (495)
Q Consensus 221 ~~~C~~~~~~~~~~YgdGs~~~G~~~~Dtvt~g~~~~~~~~fG~~~~~~--g~-f--~~~~GIlGLg~~~~s~~~q---- 291 (495)
+|.|.+.|++|+ +.|.+++|+|++++.+++ +.|||++... +. | ...+||||||++.++...+
T Consensus 194 -------~~~~~i~YgdGs-~~G~~~~Dtv~ig~~~v~-~~Fg~a~~~~~~g~~f~~~~~dGIlGLg~~~~s~~~~~~~~ 264 (453)
T 2bju_A 194 -------GTKVEMNYVSGT-VSGFFSKDLVTVGNLSLP-YKFIEVIDTNGFEPTYTASTFDGILGLGWKDLSIGSVDPIV 264 (453)
T ss_dssp -------EEEEEEECSSSE-EEEEEEEEEEEETTEEEE-EEEEEEEECGGGTTHHHHSSCCEEEECSCGGGSTTCCCCHH
T ss_pred -------CcEEEEEcCCCC-eEEEEEEEEEEEeCcEEE-EEEEEEEEecccCccccccCCceeEeccCCcccccCCCcHH
Confidence 589999999999 589999999999999999 9999999986 54 3 5789999999988765432
Q ss_pred --c---cCccCCeEEEEeecCCCCCcceEEecccC---CCCCceEEecccCCCCCeEEEEEeeeeEecCeeecccccccc
Q 011042 292 --L---GGQTGGAFSYCLVSRGTGSSGSLVFGREA---LPVGAAWVPLVRNPRAPSFYYVGLSGLGVGGMRIPISEDLFR 363 (495)
Q Consensus 292 --l---~~~~~~~FS~cL~~~~~~~~G~L~fGg~~---~~~~~~~tpl~~~~~~~~~y~v~l~gisvgg~~l~i~~~~~~ 363 (495)
+ +.+..++||+||.+.+. ..|.|+||+.| +.|++.|+|+. ..+||.|.++ |+||+ .+ + .
T Consensus 265 ~~L~~qg~i~~~~FS~~L~~~~~-~~G~l~fGg~D~~~y~G~l~~~pv~----~~~~w~V~l~-I~Vgg-~~-~--~--- 331 (453)
T 2bju_A 265 VELKNQNKIENALFTFYLPVHDK-HTGFLTIGGIEERFYEGPLTYEKLN----HDLYWQITLD-AHVGN-IM-L--E--- 331 (453)
T ss_dssp HHHHHTTSSSSCEEEEECCBTTT-BCEEEEESSCCGGGEEEEEEEEEEE----EETTEEEEEE-EEETT-EE-E--E---
T ss_pred HHHHHCCCCCCCEEEEEeCCCCC-CCeEEEECCCCHHHcCCceEEEecC----CCceEEEEEE-EEECc-EE-e--c---
Confidence 2 23668999999998633 37999999988 67899999995 3568999999 99999 33 1 1
Q ss_pred ccccCCCcEEEccCCceeeecHHHHHHHHHHHHHhhCCCCCCCC-cccccccccccCcccccccEEEEEEeCCCEEEeCC
Q 011042 364 LTQMGDDGVVMDTGTAVTRLPTPAYEAFRDAFVAQTGNLPRASG-VSIFDTCYNLSGFVSVRVPTVSFYFSGGPVLTLPA 442 (495)
Q Consensus 364 ~~~~g~~~~iiDSGTt~t~lp~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~C~~~~~~~~~~~P~i~f~f~gg~~~~l~~ 442 (495)
...+||||||++++||+++|++|++++++. +...+ .+ ..+|+. ..+|+|+|+|+ |++++||+
T Consensus 332 -----~~~aIiDSGTsl~~lP~~~~~~l~~~i~~~----~~~~g~~~-~v~C~~------~~~P~itf~fg-g~~~~l~~ 394 (453)
T 2bju_A 332 -----KANCIVDSGTSAITVPTDFLNKMLQNLDVI----KVPFLPFY-VTLCNN------SKLPTFEFTSE-NGKYTLEP 394 (453)
T ss_dssp -----EEEEEECTTCCSEEECHHHHHHHTTTSSCE----ECTTSSCE-EEETTC------TTCCCEEEECS-SCEEEECH
T ss_pred -----cccEEEcCCCCeEecCHHHHHHHHHHhCCc----ccCCCceE-EEecCC------CCCCcEEEEEC-CEEEEECH
Confidence 456999999999999999999999887654 22233 22 237864 46899999996 89999999
Q ss_pred CCeEEEecC-CCceEE-EEEecC--CCceeecHhhhcceEEEEECCCCEEEEeeCC
Q 011042 443 SNFLIPVDD-AGTFCF-AFAPSP--SGLSIIGNIQQEGIQISFDGANGFVGFGPNV 494 (495)
Q Consensus 443 ~~y~~~~~~-~~~~Cl-~~~~~~--~~~~IlG~~fl~~~yvvfD~~~~~IGFa~~~ 494 (495)
++|+++... .+..|+ +|++.+ .+.||||++|||++|+|||++++|||||+++
T Consensus 395 ~~yi~~~~~~g~~~C~~~~~~~~~~~~~~ILGd~Flr~~yvVFD~~n~rIGfA~~~ 450 (453)
T 2bju_A 395 EYYLQHIEDVGPGLCMLNIIGLDFPVPTFILGDPFMRKYFTVFDYDNHSVGIALAK 450 (453)
T ss_dssp HHHEEECTTTSTTEEEECEEECCCSSCEEEECHHHHHHEEEEEETTTTEEEEEEEC
T ss_pred HHhEeecccCCCceEEEEEEeCCCCCCCEEECHHHhhcEEEEEECCCCEEEEEEcc
Confidence 999998753 346897 788765 3579999999999999999999999999864
No 23
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2
Probab=100.00 E-value=2.1e-54 Score=437.58 Aligned_cols=296 Identities=20% Similarity=0.350 Sum_probs=248.9
Q ss_pred CCcceEEEEEeeCCCCceeeEEEecCCCceeEecCCCCCcccCCCCccCCCCCCccccccCCChhcccccCCCCCCCCce
Q 011042 151 QGSGEYFVRIGVGSPPRSQYMVIDSGSDIVWVQCQPCSQCYKQSDPVFDPADSASFSGVSCSSAVCDRLENAGCHAGRCR 230 (495)
Q Consensus 151 ~~~~~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~~C~~~~~~ 230 (495)
..+.+|+++|.|| +|++.|+|||||+++||+|.+|..|.++.++.|||++|+ ++. ..|.
T Consensus 11 ~~~~~Y~~~i~iG--~Q~~~v~~DTGSs~lWv~~~~C~~~~c~~~~~y~~~~Ss-~~~------------------~~~~ 69 (325)
T 1ibq_A 11 NNDEEYLTPVTVG--KSTLHLDFDTGSADLWVFSDELPSSEQTGHDLYTPSSSA-TKL------------------SGYS 69 (325)
T ss_dssp TTTSCEEEEEEEB--TEEEEEEEETTCCCEEEECTTSCHHHHTTSCCCBCCSSC-EEC------------------TTCB
T ss_pred CCCCEEEEEEEEC--CEEEEEEEeCCCccceEeeCCCCccccCCCCCCCchhcC-Ccc------------------CCCE
Confidence 4678999999999 999999999999999999999999988889999999999 543 2699
Q ss_pred eeeeeCCCCeEEEEEEEEEEEECCEEeeeeEEEEEEecCCCC---CCcceEEeeCCCCCCcc---------ccccC-ccC
Q 011042 231 YEVSYGDGSYTKGTLALETLTIGRTVVKNVAIGCGHKNQGMF---VGAAGLLGLGGGSMSLV---------GQLGG-QTG 297 (495)
Q Consensus 231 ~~~~YgdGs~~~G~~~~Dtvt~g~~~~~~~~fG~~~~~~g~f---~~~~GIlGLg~~~~s~~---------~ql~~-~~~ 297 (495)
|.+.|++|+.+.|.+++|+|+|++.+++++.|||++...+.| ...+||||||++.++.. .|+.. +.+
T Consensus 70 ~~i~Yg~Gs~~~G~~~~D~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~p~~~~~~~~~l~~~i~~ 149 (325)
T 1ibq_A 70 WDISYGDGSSASGDVYRDTVTVGGVTTNKQAVEAASKISSEFVQDTANDGLLGLAFSSINTVQPKAQTTFFDTVKSQLDS 149 (325)
T ss_dssp EEEECSSSCEEEEEEEEEEEEETTEEEEEEEEEEEEEECHHHHTSTTCCEEEECSCGGGCCCBSSCCCCHHHHHGGGSSS
T ss_pred EEEEeCCCCEEEEEEEEeEEEECCEEEcceEEEEEEecCccccccCCCceEEEeCcccccccCcCCCCCHHHHHHHhcCC
Confidence 999999999779999999999999999999999999876544 46899999999877642 34432 668
Q ss_pred CeEEEEeecCCCCCcceEEecccC---CCCCceEEecccCCCCCeEEEEEeeeeEecCeeeccccccccccccCCCcEEE
Q 011042 298 GAFSYCLVSRGTGSSGSLVFGREA---LPVGAAWVPLVRNPRAPSFYYVGLSGLGVGGMRIPISEDLFRLTQMGDDGVVM 374 (495)
Q Consensus 298 ~~FS~cL~~~~~~~~G~L~fGg~~---~~~~~~~tpl~~~~~~~~~y~v~l~gisvgg~~l~i~~~~~~~~~~g~~~~ii 374 (495)
++||+||.+. ..|.|+||+.| +.|++.|+|++. ..+||.|.+++|+||++.+.. ....+||
T Consensus 150 ~~FS~~l~~~---~~G~l~fGg~d~~~~~g~l~~~p~~~---~~~~w~v~l~~i~v~~~~~~~----------~~~~aii 213 (325)
T 1ibq_A 150 PLFAVQLKHD---APGVYDFGYIDDSKYTGSITYTDADS---SQGYWGFSTDGYSIGDGSSSS----------SGFSAIA 213 (325)
T ss_dssp SEEEEEEETT---EEEEEEESSCCGGGBSSCCEEEECBC---TTSSCEEEECEEEETTSCCBS----------CCEEEEE
T ss_pred cEEEEEecCC---CCceEEECCcChhhccCceEEEEcCC---CCceEEEEECcEEECCeeccC----------CCceEEE
Confidence 9999999863 37999999987 789999999963 356899999999999987631 1457999
Q ss_pred ccCCceeeecHHHHHHHHHHHHHhhCCCCCCCCcccccccccccCcccccccEEEEEEeCCCEEEeCCCCeEEEecC-CC
Q 011042 375 DTGTAVTRLPTPAYEAFRDAFVAQTGNLPRASGVSIFDTCYNLSGFVSVRVPTVSFYFSGGPVLTLPASNFLIPVDD-AG 453 (495)
Q Consensus 375 DSGTt~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~gg~~~~l~~~~y~~~~~~-~~ 453 (495)
||||++++||+++|++|++++.+.. +....+.+.+ +|+ ..+|+|+|+|+ |++++||+++|+++... ..
T Consensus 214 DSGTt~~~lP~~~~~~i~~~i~~a~--~~~~~g~~~~-~C~-------~~~P~i~f~fg-g~~~~i~~~~~~~~~~~~~~ 282 (325)
T 1ibq_A 214 DTGTTLILLDDEIVSAYYEQVSGAQ--ESYEAGGYVF-SCS-------TDLPDFTVVIG-DYKAVVPGKYINYAPVSTGS 282 (325)
T ss_dssp CTTCCSEEECHHHHHHHHTTSTTCB--CCSSSSSCEE-ETT-------CCCCCEEEEET-TEEEEECHHHHEEEESSTTC
T ss_pred eCCCCcEeCCHHHHHHHHHhCCCce--EcCcCCeEEE-EcC-------CCCCcEEEEEC-CEEEEECHHHhcccccCCCC
Confidence 9999999999999999999985432 1223333334 786 35899999995 99999999999987643 34
Q ss_pred ceEEE-EEecC-CCceeecHhhhcceEEEEECCCCEEEEeeCC
Q 011042 454 TFCFA-FAPSP-SGLSIIGNIQQEGIQISFDGANGFVGFGPNV 494 (495)
Q Consensus 454 ~~Cl~-~~~~~-~~~~IlG~~fl~~~yvvfD~~~~~IGFa~~~ 494 (495)
..|++ |++.+ .+.||||++|||++|+|||++++|||||+++
T Consensus 283 ~~C~~~i~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~ 325 (325)
T 1ibq_A 283 STCYGGIQSNSGLGLSILGDVFLKSQYVVFNSEGPKLGFAAQA 325 (325)
T ss_dssp SEEEESEEECTTTCSEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred CeEEEEEEcCCCCCceEEChHHhcCEEEEEECCCCEEEeeeCC
Confidence 78984 77654 4679999999999999999999999999874
No 24
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A*
Probab=100.00 E-value=2.2e-54 Score=454.02 Aligned_cols=302 Identities=19% Similarity=0.287 Sum_probs=252.4
Q ss_pred cceeeeecccCCCcceEEEEEeeCCCCceeeEEEecCCCceeEecCCCCCcccCCCCccCCCCCCccccccCCChhcccc
Q 011042 140 DFGTDVVSGMDQGSGEYFVRIGVGSPPRSQYMVIDSGSDIVWVQCQPCSQCYKQSDPVFDPADSASFSGVSCSSAVCDRL 219 (495)
Q Consensus 140 ~~~~p~~~~~~~~~~~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~ 219 (495)
....|+.+ +.+.+|+++|+||||||++.|++||||+++||+|..|....+..++.|||++|+||+..
T Consensus 126 ~~~~pL~n---~~d~~Y~~~I~IGTPpQ~~~vi~DTGSs~lWV~s~~C~s~~C~~~~~ydps~SsT~~~~---------- 192 (451)
T 3qvc_A 126 FDNVELKD---LANVLSFGEAKLGDNGQKFNFLFHTASSNVWVPSIKCTSESCESKNHYDSSKSKTYEKD---------- 192 (451)
T ss_dssp -CCCCGGG---GBCEEEEEEEEETTTTEEEEEEEESSBCSEEEEBTTCCSGGGTTSCCBCGGGCTTCEEE----------
T ss_pred CCccceee---cCCCEEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCccccCCCCCCCCCCCcccccC----------
Confidence 44567765 56789999999999999999999999999999999995333346789999999999985
Q ss_pred cCCCCCCCCceeeeeeCCCCeEEEEEEEEEEEECCEEeeeeEEEEEEe----cCCCC--CCcceEEeeCCCCCCc-----
Q 011042 220 ENAGCHAGRCRYEVSYGDGSYTKGTLALETLTIGRTVVKNVAIGCGHK----NQGMF--VGAAGLLGLGGGSMSL----- 288 (495)
Q Consensus 220 ~~~~C~~~~~~~~~~YgdGs~~~G~~~~Dtvt~g~~~~~~~~fG~~~~----~~g~f--~~~~GIlGLg~~~~s~----- 288 (495)
+|.|.+.|+||+ +.|.+++|+|++++..++ +.|||++. ..+ | ...+||||||++.++.
T Consensus 193 --------~~~f~i~YgdGs-~~G~~~~Dtv~igg~~v~-~~Fg~a~~t~~~~~~-f~~~~~dGILGLg~~~~s~~~~~~ 261 (451)
T 3qvc_A 193 --------DTPVKLTSKAGT-ISGIFSKDLVTIGKLSVP-YKFIEMTEIVGFEPF-YSESDVDGVFGLGWKDLSIGSIDP 261 (451)
T ss_dssp --------EEEEEEECSSEE-EEEEEEEEEEEETTEEEE-EEEEEEEEEEECTTH-HHHSCCCEEEECSSBCSSSSCCCC
T ss_pred --------CCEEEEEECCCE-EEEEEEEEEEEECCEEEE-EEEEEEEeccccCCC-ccCCCCCEEEecCCCcccccCCCC
Confidence 589999999999 699999999999999999 99999998 655 5 5679999999987653
Q ss_pred -ccccc---CccCCeEEEEeecCCCCCcceEEecccC---CCCCceEEecccCCCCCeEEEEEeeeeEecCeeecccccc
Q 011042 289 -VGQLG---GQTGGAFSYCLVSRGTGSSGSLVFGREA---LPVGAAWVPLVRNPRAPSFYYVGLSGLGVGGMRIPISEDL 361 (495)
Q Consensus 289 -~~ql~---~~~~~~FS~cL~~~~~~~~G~L~fGg~~---~~~~~~~tpl~~~~~~~~~y~v~l~gisvgg~~l~i~~~~ 361 (495)
+.++. .+..++||+||.+.... .|.|+|||+| +.|++.|+|+. .++||.|.++ |+||++ . .
T Consensus 262 ~~~~L~~qg~I~~~~FS~~L~~~~~~-~G~l~fGgiD~s~y~G~l~~~pv~----~~~~w~v~l~-I~Vgg~-~--~--- 329 (451)
T 3qvc_A 262 YIVELKTQNKIEQAVYSIYLPPENKN-KGYLTIGGIEERFFDGPLNYEKLN----HDLMWQVDLD-VHFGNV-S--S--- 329 (451)
T ss_dssp HHHHHHHTTSSSSSEEEEECCTTCTT-EEEEEESSCCGGGEEEEEEEEECS----STTSSEEEEE-EEETTE-E--E---
T ss_pred HHHHHHHcCCCCCCEEEEEEcCCCCC-CCEEEECCcchhhcCCceEEEEcc----cCCeeEEEEE-EEECCc-c--C---
Confidence 23332 36789999999987443 8999999988 67899999995 4679999999 999998 1 1
Q ss_pred ccccccCCCcEEEccCCceeeecHHHHHHHHHHHHHhhCCCCCCCCcccccccccccCcccccccEEEEEEeCCCEEEeC
Q 011042 362 FRLTQMGDDGVVMDTGTAVTRLPTPAYEAFRDAFVAQTGNLPRASGVSIFDTCYNLSGFVSVRVPTVSFYFSGGPVLTLP 441 (495)
Q Consensus 362 ~~~~~~g~~~~iiDSGTt~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~gg~~~~l~ 441 (495)
....+||||||++++||++++++|.+++++... ...+.+.+ +|. . ..+|+|+|+|+ |++++||
T Consensus 330 ------~~~~aiiDSGTt~i~lP~~~~~~i~~~i~a~~~---~~~g~y~v-~C~-~-----~~~P~itf~fg-g~~i~lp 392 (451)
T 3qvc_A 330 ------KKANVILDSATSVITVPTEFFNQFVESASVFKV---PFLSLYVT-TCG-N-----TKLPTLEYRSP-NKVYTLE 392 (451)
T ss_dssp ------EEEEEEECTTBSSEEECHHHHHHHHTTTTCEEC---TTSSCEEE-ETT-C-----TTCCCEEEEET-TEEEEEC
T ss_pred ------CCceEEEeCCCccccCCHHHHHHHHHHcCCeec---CCCCeEEe-eCC-c-----CcCCcEEEEEC-CEEEEEc
Confidence 145699999999999999999999999876531 22233333 775 2 67899999997 8999999
Q ss_pred CCCeEEEecC-CCceEE-EEEecC--CCceeecHhhhcceEEEEECCCCEEEEeeCC
Q 011042 442 ASNFLIPVDD-AGTFCF-AFAPSP--SGLSIIGNIQQEGIQISFDGANGFVGFGPNV 494 (495)
Q Consensus 442 ~~~y~~~~~~-~~~~Cl-~~~~~~--~~~~IlG~~fl~~~yvvfD~~~~~IGFa~~~ 494 (495)
+++|+++..+ .+..|+ +|.+.+ .+.||||++|||++|+|||++++|||||+++
T Consensus 393 ~~~yi~~~~~~~~~~C~~~i~~~~~~~~~~ILG~~FLr~~YvVfD~~n~rIGfA~ak 449 (451)
T 3qvc_A 393 PKQYLEPLENIFSALCMLNIVPIDLEKNTFVLGDPFMRKYFTVYDYDNHTVGFALAK 449 (451)
T ss_dssp HHHHEEECTTTSTTEEEECEEECCCSTTEEEECHHHHHHEEEEEETTTTEEEEEEEC
T ss_pred HHHheeecccCCCCeEEEEEEeCCCCCCCEEECHHHhhcEEEEEECCCCEEEEEEcc
Confidence 9999998653 357896 788765 5679999999999999999999999999874
No 25
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2
Probab=100.00 E-value=3e-54 Score=456.69 Aligned_cols=317 Identities=23% Similarity=0.422 Sum_probs=251.5
Q ss_pred ceeeeecccCCCcceEEEEEeeCCCCceeeEEEecCCCceeEecCCCC---CcccCCCCccCCCCCCccccccCCChhcc
Q 011042 141 FGTDVVSGMDQGSGEYFVRIGVGSPPRSQYMVIDSGSDIVWVQCQPCS---QCYKQSDPVFDPADSASFSGVSCSSAVCD 217 (495)
Q Consensus 141 ~~~p~~~~~~~~~~~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~C~---~C~~~~~~~fdps~SsT~~~~~C~~~~C~ 217 (495)
..+|+.+ +.+++|+++|+||||+|++.|+|||||+++||+|..|. .|. .++.|||++|+||+..
T Consensus 42 ~~~~l~n---~~~~~Y~~~i~IGTP~Q~~~v~~DTGSs~lWV~~~~C~~~~~C~--~~~~y~~~~SsT~~~~-------- 108 (478)
T 1qdm_A 42 DIVALKN---YMNAQYFGEIGVGTPPQKFTVIFDTGSSNLWVPSAKCYFSIACY--LHSRYKAGASSTYKKN-------- 108 (478)
T ss_dssp CSGGGCC---GGGCCEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCCSCGGGG--GSCCBCGGGCTTCBCC--------
T ss_pred ceEEeEe---ccCCEEEEEEEECCCCeEEEEEEcCCCcceEEecCCCCCCcccc--CCCCCCcccCCCeeeC--------
Confidence 3466655 46789999999999999999999999999999999995 686 4679999999999885
Q ss_pred cccCCCCCCCCceeeeeeCCCCeEEEEEEEEEEEECCEEeeeeEEEEEEecCCC-C--CCcceEEeeCCCCCCcccc---
Q 011042 218 RLENAGCHAGRCRYEVSYGDGSYTKGTLALETLTIGRTVVKNVAIGCGHKNQGM-F--VGAAGLLGLGGGSMSLVGQ--- 291 (495)
Q Consensus 218 ~~~~~~C~~~~~~~~~~YgdGs~~~G~~~~Dtvt~g~~~~~~~~fG~~~~~~g~-f--~~~~GIlGLg~~~~s~~~q--- 291 (495)
+|.|.+.|++|+ +.|.+++|+|+|++..++++.|||++...+. | ..++||||||++.++...+
T Consensus 109 ----------~~~~~i~Yg~Gs-~~G~~~~Dtv~ig~~~v~~~~Fg~a~~~~~~~f~~~~~dGIlGLg~~~~s~~~~~p~ 177 (478)
T 1qdm_A 109 ----------GKPAAIQYGTGS-IAGYFSEDSVTVGDLVVKDQEFIEATKEPGITFLVAKFDGILGLGFKEISVGKAVPV 177 (478)
T ss_dssp ----------CCEEEEEETTEE-EEEEEEEEEEEETTEEEEEEEEEEEEECCBSHHHHCSSSEEEECSCGGGCGGGCCCH
T ss_pred ----------CcEEEEEcCCCC-eEEEEEEEEEEECCeEECCEEEEEEEecCCcccccccccceecccccccccCCCCcH
Confidence 589999999998 5899999999999999999999999987653 3 5689999999998875332
Q ss_pred ---c---cCccCCeEEEEeecCCC-CCcceEEecccC---CCCCceEEecccCCCCCeEEEEEeeeeEecCeeecccccc
Q 011042 292 ---L---GGQTGGAFSYCLVSRGT-GSSGSLVFGREA---LPVGAAWVPLVRNPRAPSFYYVGLSGLGVGGMRIPISEDL 361 (495)
Q Consensus 292 ---l---~~~~~~~FS~cL~~~~~-~~~G~L~fGg~~---~~~~~~~tpl~~~~~~~~~y~v~l~gisvgg~~l~i~~~~ 361 (495)
+ +.+..++||+||.+... ...|.|+||+.| +.|++.|+|+. ..+||.|.+++|+||++.+.+..
T Consensus 178 ~~~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~G~l~~~pv~----~~~~w~v~l~~i~v~g~~~~~~~-- 251 (478)
T 1qdm_A 178 WYKMIEQGLVSDPVFSFWLNRHVDEGEGGEIIFGGMDPKHYVGEHTYVPVT----QKGYWQFDMGDVLVGGKSTGFCA-- 251 (478)
T ss_dssp HHHHTTTTCCSSSEEEEECCCC-----CEEEEETCCCTTSEEEEEEEEEEE----EETTEEEEECCEEETTEECSTTT--
T ss_pred HHHHHHCCCCCCCEEEEEeecCCCCCCCeEEEeCCcCHhhcCCCceEEecc----CCCeEEEEEeEEEECCEEEeecC--
Confidence 2 23567999999987532 247999999987 56899999995 35699999999999998876532
Q ss_pred ccccccCCCcEEEccCCceeeecHHHHHHHHHHHHHhh----------------------CCCCC-----------CCC-
Q 011042 362 FRLTQMGDDGVVMDTGTAVTRLPTPAYEAFRDAFVAQT----------------------GNLPR-----------ASG- 407 (495)
Q Consensus 362 ~~~~~~g~~~~iiDSGTt~t~lp~~~~~~l~~~~~~~~----------------------~~~~~-----------~~~- 407 (495)
+...+||||||+++++|+++|++|.+++++.. ...+. ..+
T Consensus 252 ------~~~~aiiDTGTs~~~lP~~~~~~i~~~i~a~~~~s~~Ck~~v~~yg~~ii~~l~~~~~p~~vC~~iglC~~~~~ 325 (478)
T 1qdm_A 252 ------GGCAAIADSGTSLLAGPTAIITEINEKIGAAGVVSQECKTIVSQYGQQILDLLLAETQPKKICSQVGLCTFDGT 325 (478)
T ss_dssp ------TCEEEEECSSCCSEEECHHHHHHHHHHHTCCCBCCHHHHHHHHHTHHHHHHHHHTTCCHHHHHHHTTCC-----
T ss_pred ------CCceEEEcCCCCceeCCHHHHHHHHHHhCccccccccccchhhhhhhHHHHhhhhccChhhhhccccccccCcc
Confidence 25679999999999999999999999986421 00000 000
Q ss_pred ---------------------------------------------------ccccccccccc---------CcccccccE
Q 011042 408 ---------------------------------------------------VSIFDTCYNLS---------GFVSVRVPT 427 (495)
Q Consensus 408 ---------------------------------------------------~~~~~~C~~~~---------~~~~~~~P~ 427 (495)
.+..+.|+.++ |.....+|+
T Consensus 326 ~~~~~~~~~v~~~~~~~~~~~~~~~~C~~Ce~~v~~~~~~l~~n~t~~~I~~~~~~~C~~~~~~~g~~~v~C~~~~~lP~ 405 (478)
T 1qdm_A 326 RGVSAGIRSVVDDEPVKSNGLRADPMCSACEMAVVWMQNQLAQNKTQDLILDYVNQLCNRLPSPMGESAVDCGSLGSMPD 405 (478)
T ss_dssp ----------------------CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCBCCSSSCCEECGGGGTTCCC
T ss_pred ccccccccccccccccccccccccccchHHHHHHHHHHHHHhccccHHHHHHHHHHHhhccCCCCCeEEeeccccccccc
Confidence 00112344332 222367999
Q ss_pred EEEEEeCCCEEEeCCCCeEEEecCC-CceEE-EEEecC-----CCceeecHhhhcceEEEEECCCCEEEEeeCC
Q 011042 428 VSFYFSGGPVLTLPASNFLIPVDDA-GTFCF-AFAPSP-----SGLSIIGNIQQEGIQISFDGANGFVGFGPNV 494 (495)
Q Consensus 428 i~f~f~gg~~~~l~~~~y~~~~~~~-~~~Cl-~~~~~~-----~~~~IlG~~fl~~~yvvfD~~~~~IGFa~~~ 494 (495)
|+|+|+ |++|+|+|++|+++.... ...|+ +|...+ ++.||||++|||++|+|||++++|||||++.
T Consensus 406 i~f~~g-g~~~~l~p~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILGd~fl~~~y~vfD~~~~rIGfA~a~ 478 (478)
T 1qdm_A 406 IEFTIG-GKKFALKPEEYILKVGEGAAAQCISGFTAMDIPPPRGPLWILGDVFMGPYHTVFDYGKLRIGFAKAA 478 (478)
T ss_dssp EEEEET-TEEEEECHHHHEEECSCGGGCCEEESEEECCCCTTSCSEEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred EEEEEC-CEEEEEChHHhEEEccCCCCCeEEEEEEeccCCCCCCCcEEECHHHhccEEEEEECCCCEEEEEeCC
Confidence 999997 899999999999987532 35897 576532 3579999999999999999999999999863
No 26
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A*
Probab=100.00 E-value=1.7e-54 Score=439.08 Aligned_cols=300 Identities=19% Similarity=0.285 Sum_probs=251.3
Q ss_pred ceeeeecccCCCcceEEEEEeeCCCCceeeEEEecCCCceeEecCCCC--CcccCCCCccCCCCCCccccccCCChhccc
Q 011042 141 FGTDVVSGMDQGSGEYFVRIGVGSPPRSQYMVIDSGSDIVWVQCQPCS--QCYKQSDPVFDPADSASFSGVSCSSAVCDR 218 (495)
Q Consensus 141 ~~~p~~~~~~~~~~~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~C~--~C~~~~~~~fdps~SsT~~~~~C~~~~C~~ 218 (495)
...|+.+ +.+.+|+++|.|| +|++.|+|||||+++||+|.+|. .|..+.++.|||++| ||+..
T Consensus 7 ~~~~l~n---~~~~~Y~~~i~iG--~Q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~~~y~~~~S-T~~~~--------- 71 (330)
T 1yg9_A 7 LYKLVHV---FINTQYAGITKIG--NQNFLTVFDSTSCNVVVASQECVGGACVCPNLQKYEKLKP-KYISD--------- 71 (330)
T ss_dssp SCSCEEE---EECTTSEEEEEET--TEEEEEEEETTCCCEEEECTTCCSGGGGSTTCCCCCCSSC-EEEEE---------
T ss_pred eEeeeec---CCCCEEEEEEEEC--CEEEEEEEeCCCcceEEecCCCCCccCcccccCccCCCCC-ceEEC---------
Confidence 4456665 4568899999999 99999999999999999999996 685567889999999 99885
Q ss_pred ccCCCCCCCCceeeeeeCCCCeEEEEEEEEEEEECCEEeeeeEEEEEEecCCCC--CCcceEEeeCCCCCC-------cc
Q 011042 219 LENAGCHAGRCRYEVSYGDGSYTKGTLALETLTIGRTVVKNVAIGCGHKNQGMF--VGAAGLLGLGGGSMS-------LV 289 (495)
Q Consensus 219 ~~~~~C~~~~~~~~~~YgdGs~~~G~~~~Dtvt~g~~~~~~~~fG~~~~~~g~f--~~~~GIlGLg~~~~s-------~~ 289 (495)
++.|.+.|++|+. .|.+++|+|+|++.+++++.|||++.....| ...+||||||++.++ +.
T Consensus 72 ---------~~~~~i~Yg~Gs~-~G~~~~Dtv~ig~~~~~~~~fg~~~~~~~~f~~~~~~GilGLg~~~~s~~~~~~~~~ 141 (330)
T 1yg9_A 72 ---------GNVQVKFFDTGSA-VGRGIEDSLTISQLTTSQQDIVLADELSQEVCILSADVVVGIAAPGCPNALKGKTVL 141 (330)
T ss_dssp ---------EEEEEEETTTEEE-EEEEEEEEEEETTEEEEEEEEEEEEEECTHHHHTTCSEEEECSCTTSCCTTSCCCHH
T ss_pred ---------CCEEEEEECCceE-EEEEEEEEEEECCEEEcCeEEEEEEEcccccccccCceEEEcCcchhccccCCCCHH
Confidence 5899999999997 9999999999999999999999999884334 568999999999887 33
Q ss_pred ccc---cCccCCeEEEEeecCCCC-CcceEEecccC---CCCCceEEecccCCCCCeEEEEEeeeeEecCeeeccccccc
Q 011042 290 GQL---GGQTGGAFSYCLVSRGTG-SSGSLVFGREA---LPVGAAWVPLVRNPRAPSFYYVGLSGLGVGGMRIPISEDLF 362 (495)
Q Consensus 290 ~ql---~~~~~~~FS~cL~~~~~~-~~G~L~fGg~~---~~~~~~~tpl~~~~~~~~~y~v~l~gisvgg~~l~i~~~~~ 362 (495)
.++ +.+ +++||+||.+..+. ..|.|+||+.| +.|++.|+|+. ..+||.|.+++|+||++.+. .
T Consensus 142 ~~l~~qg~i-~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~----~~~~w~v~l~~i~v~~~~~~-~---- 211 (330)
T 1yg9_A 142 ENFVEENLI-APVFSIHHARFQDGEHFGEIIFGGSDWKYVDGEFTYVPLV----GDDSWKFRLDGVKIGDTTVA-P---- 211 (330)
T ss_dssp HHHHHTTSS-CSEEEEEEEECTTSCEEEEEEETSCCGGGEEEEEEEEEBS----CTTSCCEECSEEEETTEEEE-C----
T ss_pred HHHHhcCCC-CceEEEEEcCCCCCCCCCEEEECCcCHHHccCceEEEECC----CCCEEEEEeCeEEECCEEEc-C----
Confidence 333 236 89999999886322 37999999987 67899999995 46799999999999998764 1
Q ss_pred cccccCCCcEEEccCCceeeecHHHHHHHHHHHHHhhCCCCCCCC--cc-cccccccccCcccccccEEEEEEeCCCEEE
Q 011042 363 RLTQMGDDGVVMDTGTAVTRLPTPAYEAFRDAFVAQTGNLPRASG--VS-IFDTCYNLSGFVSVRVPTVSFYFSGGPVLT 439 (495)
Q Consensus 363 ~~~~~g~~~~iiDSGTt~t~lp~~~~~~l~~~~~~~~~~~~~~~~--~~-~~~~C~~~~~~~~~~~P~i~f~f~gg~~~~ 439 (495)
....+||||||++++||+++|++|++++++.. ...+ .+ .+ +|+.. ..+|+|+|+|+ |++++
T Consensus 212 -----~~~~aiiDSGTs~~~lP~~~~~~l~~~~~~~~----~~~g~~~~~~~-~C~~~-----~~~p~i~f~fg-g~~~~ 275 (330)
T 1yg9_A 212 -----AGTQAIIDTSKAIIVGPKAYVNPINEAIGCVV----EKTTTRRICKL-DCSKI-----PSLPDVTFVIN-GRNFN 275 (330)
T ss_dssp -----TTCEEEECTTCSSEEEEHHHHHHHHHHHTCEE----EECSSCEEEEE-CGGGG-----GGSCCEEEEET-TEEEE
T ss_pred -----CCcEEEEecCCccccCCHHHHHHHHHHhCCcc----cCCCceEEEEE-ECCCc-----cccCcEEEEEC-CEEEE
Confidence 14679999999999999999999999986642 1223 22 33 67653 57899999996 99999
Q ss_pred eCCCCeEEEecCCCceEE-EEEec-CCCceeecHhhhcceEEEEECCCCEEEEeeCC
Q 011042 440 LPASNFLIPVDDAGTFCF-AFAPS-PSGLSIIGNIQQEGIQISFDGANGFVGFGPNV 494 (495)
Q Consensus 440 l~~~~y~~~~~~~~~~Cl-~~~~~-~~~~~IlG~~fl~~~yvvfD~~~~~IGFa~~~ 494 (495)
||+++|+++. +..|+ +|++. ..+.||||++|||++|+|||++++|||||+++
T Consensus 276 l~~~~y~~~~---~~~C~~~i~~~~~~~~~ilG~~fl~~~y~vfD~~~~riGfA~~~ 329 (330)
T 1yg9_A 276 ISSQYYIQQN---GNLCYSGFQPCGHSDHFFIGDFFVDHYYSEFNWENKTMGFGRSV 329 (330)
T ss_dssp ECHHHHEEEE---TTEEEESEEEETTCSSEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred ECHHHhcccC---CCcEEEEEEeCCCCCeEEecHHHhhheEEEEECCCCEEEEEECC
Confidence 9999999986 56897 77764 34579999999999999999999999999864
No 27
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A*
Probab=100.00 E-value=4.2e-54 Score=434.94 Aligned_cols=293 Identities=20% Similarity=0.339 Sum_probs=245.9
Q ss_pred CcceEEEEEeeCCCCceeeEEEecCCCceeEecCCCCCcccCCCCccCCCCCCccccccCCChhcccccCCCCCCCCcee
Q 011042 152 GSGEYFVRIGVGSPPRSQYMVIDSGSDIVWVQCQPCSQCYKQSDPVFDPADSASFSGVSCSSAVCDRLENAGCHAGRCRY 231 (495)
Q Consensus 152 ~~~~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~~C~~~~~~~ 231 (495)
.+.+|+++|.|| +|++.|+|||||+++||+|.+|..|.++.++.|||++|+ ++.. +|.|
T Consensus 13 ~~~~Y~~~i~iG--~q~~~v~~DTGSs~lWv~~~~C~~~~c~~~~~y~~~~Ss-~~~~------------------~~~~ 71 (323)
T 1izd_A 13 NDEEYITQVTVG--DDTLGLDFDTGSADLWVFSSQTPSSERSGHDYYTPGSSA-QKID------------------GATW 71 (323)
T ss_dssp GGCCEEEEEEET--TEEEEEEEETTCCCEEECBTTSCHHHHTTCCCBCCCTTC-EEEE------------------EEEE
T ss_pred CCCEEEEEEEEC--CEEEEEEEcCCCcceEEecCCCCcccccCCCCCCccccC-CccC------------------CCeE
Confidence 568999999999 899999999999999999999999988889999999999 6532 5999
Q ss_pred eeeeCCCCeEEEEEEEEEEEECCEEeeeeEEEEEEecCCCC---CCcceEEeeCCCCCCcc---------cccc-CccCC
Q 011042 232 EVSYGDGSYTKGTLALETLTIGRTVVKNVAIGCGHKNQGMF---VGAAGLLGLGGGSMSLV---------GQLG-GQTGG 298 (495)
Q Consensus 232 ~~~YgdGs~~~G~~~~Dtvt~g~~~~~~~~fG~~~~~~g~f---~~~~GIlGLg~~~~s~~---------~ql~-~~~~~ 298 (495)
.+.|++|+.+.|.+++|+|+|++.+++++.|||++...+.| ...+||||||++.++.. .++. .+.++
T Consensus 72 ~i~Yg~Gs~~~G~~~~D~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~p~~~~~~~~~l~~~i~~~ 151 (323)
T 1izd_A 72 SISYGDGSSASGDVYKDKVTVGGVSYDSQAVESAEKVSSEFTQDTANDGLLGLAFSSINTVQPTPQKTFFDNVKSSLSEP 151 (323)
T ss_dssp EEECTTSCEEEEEEEEEEEEETTEEEEEEEEEEEEEECHHHHHCTTCCEEEECSCGGGCCCBSSCCCCHHHHHGGGSSSS
T ss_pred EEEcCCCCeEEEEEEEEEEEECCEEECceEEEEEEeccccccccCCCceEEecCcccccccCCCCCCCHHHHHHHhccCc
Confidence 99999999779999999999999999999999999876544 46899999999887653 2222 26679
Q ss_pred eEEEEeecCCCCCcceEEecccC---CCCCceEEecccCCCCCeEEEEEeeeeEecCeeeccccccccccccCCCcEEEc
Q 011042 299 AFSYCLVSRGTGSSGSLVFGREA---LPVGAAWVPLVRNPRAPSFYYVGLSGLGVGGMRIPISEDLFRLTQMGDDGVVMD 375 (495)
Q Consensus 299 ~FS~cL~~~~~~~~G~L~fGg~~---~~~~~~~tpl~~~~~~~~~y~v~l~gisvgg~~l~i~~~~~~~~~~g~~~~iiD 375 (495)
+||+||.+. ..|.|+||+.| +.|++.|+|++. ..+||.|.+++|+||+ .+. . ....+|||
T Consensus 152 ~FS~~L~~~---~~G~l~fGg~d~~~~~g~l~~~p~~~---~~~~w~v~l~~i~v~~-~~~--~--------~~~~aiiD 214 (323)
T 1izd_A 152 IFAVALKHN---APGVYDFGYTDSSKYTGSITYTDVDN---SQGFWGFTADGYSIGS-DSS--S--------DSITGIAD 214 (323)
T ss_dssp EEEEECCTT---SCEEEEESSCCTTSEEEEEEEEECBC---TTSSCEEEESEEEETT-EEE--C--------CCEEEEEC
T ss_pred EEEEEccCC---CCCEEEECCcCccccccceEEEECCC---CCceEEEEECeEEECC-ccc--C--------CCceEEEe
Confidence 999999863 37999999987 568999999963 4568999999999999 442 1 14569999
Q ss_pred cCCceeeecHHHHHHHHHHHHHhhCCCCCCCCcccccccccccCcccccccEEEEEEeCCCEEEeCCCCeEEEecCCCce
Q 011042 376 TGTAVTRLPTPAYEAFRDAFVAQTGNLPRASGVSIFDTCYNLSGFVSVRVPTVSFYFSGGPVLTLPASNFLIPVDDAGTF 455 (495)
Q Consensus 376 SGTt~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~gg~~~~l~~~~y~~~~~~~~~~ 455 (495)
|||++++||++++++|++++.+.. +....+.+.+ +|+ ..+|+|+|+|+ |++++||+++|+++.. .+..
T Consensus 215 SGTs~~~lp~~~~~~i~~~i~ga~--~~~~~g~~~~-~C~-------~~~P~i~f~fg-g~~~~i~~~~~~~~~~-~~~~ 282 (323)
T 1izd_A 215 TGTTLLLLDDSIVDAYYEQVNGAS--YDSSQGGYVF-PSS-------ASLPDFSVTIG-DYTATVPGEYISFADV-GNGQ 282 (323)
T ss_dssp TTCCSEEECHHHHHHHHTTSTTCE--EETTTTEEEE-ETT-------CCCCCEEEEET-TEEEEECHHHHEEEEC-STTE
T ss_pred CCCcceeCCHHHHHHHHHhCCCcE--EcCcCCEEEE-ECC-------CCCceEEEEEC-CEEEecCHHHeEEecC-CCCe
Confidence 999999999999999999885332 1222343334 686 35899999995 9999999999998764 3678
Q ss_pred EEE-EEecC-CCceeecHhhhcceEEEEECCCCEEEEeeCC
Q 011042 456 CFA-FAPSP-SGLSIIGNIQQEGIQISFDGANGFVGFGPNV 494 (495)
Q Consensus 456 Cl~-~~~~~-~~~~IlG~~fl~~~yvvfD~~~~~IGFa~~~ 494 (495)
|++ |.+.+ .+.||||++|||++|+|||++++|||||+++
T Consensus 283 C~~~i~~~~~~~~~IlG~~fl~~~y~vfD~~~~riGfA~~a 323 (323)
T 1izd_A 283 TFGGIQSNSGIGFSIFGDVFLKSQYVVFDASGPRLGFAAQA 323 (323)
T ss_dssp EEESEEECTTTSSEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred EEEEEEcCCCCCcEEEChHHhcCEEEEEECCCCEEEEeeCC
Confidence 985 77754 4679999999999999999999999999863
No 28
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A
Probab=100.00 E-value=3.1e-54 Score=435.90 Aligned_cols=294 Identities=21% Similarity=0.378 Sum_probs=245.9
Q ss_pred CCcceEEEEEeeCCCCceeeEEEecCCCceeEecCCCCCcccCCCCccCCCCCCccccccCCChhcccccCCCCCCCCce
Q 011042 151 QGSGEYFVRIGVGSPPRSQYMVIDSGSDIVWVQCQPCSQCYKQSDPVFDPADSASFSGVSCSSAVCDRLENAGCHAGRCR 230 (495)
Q Consensus 151 ~~~~~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~~C~~~~~~ 230 (495)
..+.+|+++|.|| +|++.|+|||||+++||+|.+|..|.++.++.|||++|+ ++.. +|.
T Consensus 12 ~~~~~Y~~~i~iG--~Q~~~v~~DTGSs~lWv~~~~C~~~~c~~~~~y~~~~Ss-~~~~------------------~~~ 70 (323)
T 1bxo_A 12 ANDEEYITPVTIG--GTTLNLNFDTGSADLWVFSTELPASQQSGHSVYNPSATG-KELS------------------GYT 70 (323)
T ss_dssp GGGSCEEEEEEET--TEEEEEEEETTCCCEEECBTTSCHHHHTTSCCBCHHHHC-EEEE------------------EEE
T ss_pred CCCCEEEEEEEEC--CEEEEEEEeCCCcceEEecCCCCchhccCCCCCCcccCC-cccC------------------CCe
Confidence 3568999999999 999999999999999999999999988889999999999 6542 699
Q ss_pred eeeeeCCCCeEEEEEEEEEEEECCEEeeeeEEEEEEecCCCC---CCcceEEeeCCCCCCcc---------cccc-CccC
Q 011042 231 YEVSYGDGSYTKGTLALETLTIGRTVVKNVAIGCGHKNQGMF---VGAAGLLGLGGGSMSLV---------GQLG-GQTG 297 (495)
Q Consensus 231 ~~~~YgdGs~~~G~~~~Dtvt~g~~~~~~~~fG~~~~~~g~f---~~~~GIlGLg~~~~s~~---------~ql~-~~~~ 297 (495)
|.+.|++|+.+.|.+++|+|+|++.+++++.|||++...+.| ...+||||||++.++.. .++. .+.+
T Consensus 71 ~~i~Yg~Gs~~~G~~~~D~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~~~~l~~~i~~ 150 (323)
T 1bxo_A 71 WSISYGDGSSASGNVFTDSVTVGGVTAHGQAVQAAQQISAQFQQDTNNDGLLGLAFSSINTVQPQSQTTFFDTVKSSLAQ 150 (323)
T ss_dssp EEEECTTSCEEEEEEEEEEEEETTEEEEEEEEEEEEEECHHHHTCTTCSEEEECSCGGGCCCBSSCCCCHHHHHGGGBSS
T ss_pred EEEEeCCCCeEEEEEEEEEEEECCEEECcEEEEEEEecCcccccCCCCceEEEeCcccccccccCCCCCHHHHHHHhcCC
Confidence 999999999779999999999999999999999999876544 46899999999877653 2222 2667
Q ss_pred CeEEEEeecCCCCCcceEEecccC---CCCCceEEecccCCCCCeEEEEEeeeeEecCeeeccccccccccccCCCcEEE
Q 011042 298 GAFSYCLVSRGTGSSGSLVFGREA---LPVGAAWVPLVRNPRAPSFYYVGLSGLGVGGMRIPISEDLFRLTQMGDDGVVM 374 (495)
Q Consensus 298 ~~FS~cL~~~~~~~~G~L~fGg~~---~~~~~~~tpl~~~~~~~~~y~v~l~gisvgg~~l~i~~~~~~~~~~g~~~~ii 374 (495)
++||+||.+. ..|.|+||+.| +.|++.|+|++. ..+||.|.+++|+||+ .. .. ...+||
T Consensus 151 ~~FS~~L~~~---~~G~l~fGg~d~~~~~g~l~~~p~~~---~~~~w~v~l~~i~v~~-~~---~~--------~~~aii 212 (323)
T 1bxo_A 151 PLFAVALKHQ---QPGVYDFGFIDSSKYTGSLTYTGVDN---SQGFWSFNVDSYTAGS-QS---GD--------GFSGIA 212 (323)
T ss_dssp SEEEEECCSS---SCEEEEESSCCGGGBSSCCEEEECBC---TTSSCEEEEEEEEETT-EE---EE--------EEEEEE
T ss_pred cEEEEEEeCC---CCceEEEeCcChhhccCceEEEECCC---CCCeEEEEEeeEEECC-cc---CC--------CceEEE
Confidence 9999999863 37999999987 789999999963 3568999999999999 21 11 456999
Q ss_pred ccCCceeeecHHHHHHHHHHHHHhhCCCCCCCCcccccccccccCcccccccEEEEEEeCCCEEEeCCCCeEEEecCCCc
Q 011042 375 DTGTAVTRLPTPAYEAFRDAFVAQTGNLPRASGVSIFDTCYNLSGFVSVRVPTVSFYFSGGPVLTLPASNFLIPVDDAGT 454 (495)
Q Consensus 375 DSGTt~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~gg~~~~l~~~~y~~~~~~~~~ 454 (495)
||||++++||++++++|++++.+.. +....+.+.+ +|+ ..+|+|+|+|+ |++++||+++|+++......
T Consensus 213 DSGTs~~~lP~~~~~~l~~~i~~a~--~~~~~g~~~~-~C~-------~~~P~i~f~fg-g~~~~l~~~~~~~~~~~~~~ 281 (323)
T 1bxo_A 213 DTGTTLLLLDDSVVSQYYSQVSGAQ--QDSNAGGYVF-DCS-------TNLPDFSVSIS-GYTATVPGSLINYGPSGDGS 281 (323)
T ss_dssp CTTCSSEEECHHHHHHHHTTSTTCE--EETTTTEEEE-CTT-------CCCCCEEEEET-TEEEEECHHHHEEEECSSSS
T ss_pred eCCCCceeCCHHHHHHHHHhCCCce--EcCcCCEEEE-ECC-------CCCceEEEEEC-CEEEEECHHHeEEeccCCCC
Confidence 9999999999999999999884432 1222333333 686 35899999995 89999999999997653347
Q ss_pred eEEE-EEecC-CCceeecHhhhcceEEEEECCCCEEEEeeCC
Q 011042 455 FCFA-FAPSP-SGLSIIGNIQQEGIQISFDGANGFVGFGPNV 494 (495)
Q Consensus 455 ~Cl~-~~~~~-~~~~IlG~~fl~~~yvvfD~~~~~IGFa~~~ 494 (495)
.|++ |.+.+ .+.||||++|||++|+|||++++|||||++.
T Consensus 282 ~C~~~i~~~~~~~~~ILG~~fl~~~y~vfD~~~~riGfA~~a 323 (323)
T 1bxo_A 282 TCLGGIQSNSGIGFSIFGDIFLKSQYVVFDSDGPQLGFAPQA 323 (323)
T ss_dssp CEEESEEECTTCSSEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred eEEEEEECCCCCCcEEEChHHHcCEEEEEECCCCEEEEecCC
Confidence 8974 77753 4679999999999999999999999999874
No 29
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens}
Probab=100.00 E-value=1.6e-53 Score=440.64 Aligned_cols=308 Identities=24% Similarity=0.418 Sum_probs=247.3
Q ss_pred cceEEEEEeeCCCCceeeEEEecCCCceeEecCCCCCcccCCCCccCCCCCCccccccCCChhcccccCCCCCCCCceee
Q 011042 153 SGEYFVRIGVGSPPRSQYMVIDSGSDIVWVQCQPCSQCYKQSDPVFDPADSASFSGVSCSSAVCDRLENAGCHAGRCRYE 232 (495)
Q Consensus 153 ~~~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~~C~~~~~~~~ 232 (495)
+..|+++|+||||+|++.|+|||||+++||+|.+|..| ++.|||++|+||+.. +|.|.
T Consensus 12 ~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c~~~----~~~f~~~~SsT~~~~------------------~~~~~ 69 (383)
T 2ewy_A 12 GRGYYLEMLIGTPPQKLQILVDTGSSNFAVAGTPHSYI----DTYFDTERSSTYRSK------------------GFDVT 69 (383)
T ss_dssp TTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCBTTB----SCCCCGGGCTTCEEE------------------EEEEE
T ss_pred CCcEEEEEEecCCCceEEEEEecCCCceEEecCCCCcc----ccCcccccCccceeC------------------CceEE
Confidence 46799999999999999999999999999999998766 578999999999986 58999
Q ss_pred eeeCCCCeEEEEEEEEEEEECCEE-ee-eeEEEEEEecCCCC---CCcceEEeeCCCCCCccc--------ccc---Ccc
Q 011042 233 VSYGDGSYTKGTLALETLTIGRTV-VK-NVAIGCGHKNQGMF---VGAAGLLGLGGGSMSLVG--------QLG---GQT 296 (495)
Q Consensus 233 ~~YgdGs~~~G~~~~Dtvt~g~~~-~~-~~~fG~~~~~~g~f---~~~~GIlGLg~~~~s~~~--------ql~---~~~ 296 (495)
+.|++|+. .|.+++|+|+|++.. .. .+.|+|..+..+.| ...+||||||++.++.+. ++. .+
T Consensus 70 i~Yg~Gs~-~G~~~~Dtv~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~~~l~~q~~i- 147 (383)
T 2ewy_A 70 VKYTQGSW-TGFVGEDLVTIPKGFNTSFLVNIATIFESENFFLPGIKWNGILGLAYATLAKPSSSLETFFDSLVTQANI- 147 (383)
T ss_dssp EECSSCEE-EEEEEEEEEEETTTEEEEEEEEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTSCCHHHHHHHHHTC-
T ss_pred EEECCcEE-EEEEEEEEEEECCCccceeEEEEEEEEeecceeeccCcCceEEecCchhcccccccccCHHHHHHHccCC-
Confidence 99999986 899999999997532 22 46788887766655 367999999998875431 221 24
Q ss_pred CCeEEEEeecC------CCCCcceEEecccC---CCCCceEEecccCCCCCeEEEEEeeeeEecCeeecccccccccccc
Q 011042 297 GGAFSYCLVSR------GTGSSGSLVFGREA---LPVGAAWVPLVRNPRAPSFYYVGLSGLGVGGMRIPISEDLFRLTQM 367 (495)
Q Consensus 297 ~~~FS~cL~~~------~~~~~G~L~fGg~~---~~~~~~~tpl~~~~~~~~~y~v~l~gisvgg~~l~i~~~~~~~~~~ 367 (495)
.++||+||... .....|.|+||+.| +.|++.|+|++ ...||.|.+++|+||++.+.++...|.
T Consensus 148 ~~~FS~~l~~~~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~----~~~~~~v~l~~i~v~g~~~~~~~~~~~---- 219 (383)
T 2ewy_A 148 PNVFSMQMCGAGLPVAGSGTNGGSLVLGGIEPSLYKGDIWYTPIK----EEWYYQIEILKLEIGGQSLNLDCREYN---- 219 (383)
T ss_dssp CSCEEEEECCC---------CCEEEEETSCCGGGCCSCEEEEECS----SBTTBBCCEEEEEETTEECCCCTTTTT----
T ss_pred CcceEEEeeccccccccCCCCCeEEEeCccchhhccCccEEEecC----CCceEEEEEEEEEECCEEccccccccC----
Confidence 68999999641 11247999999987 78999999995 346899999999999999877655442
Q ss_pred CCCcEEEccCCceeeecHHHHHHHHHHHHHhhCCCCCC-CCc--ccccccccccCcccccccEEEEEEeCC-----CEEE
Q 011042 368 GDDGVVMDTGTAVTRLPTPAYEAFRDAFVAQTGNLPRA-SGV--SIFDTCYNLSGFVSVRVPTVSFYFSGG-----PVLT 439 (495)
Q Consensus 368 g~~~~iiDSGTt~t~lp~~~~~~l~~~~~~~~~~~~~~-~~~--~~~~~C~~~~~~~~~~~P~i~f~f~gg-----~~~~ 439 (495)
...+||||||++++||+++|++|++++.+.... +.. .++ ....+|+.........+|+|+|+|+|+ .+++
T Consensus 220 -~~~aiiDSGTt~~~lP~~~~~~l~~~i~~~~~~-~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~~~~~~ 297 (383)
T 2ewy_A 220 -ADKAIVDSGTTLLRLPQKVFDAVVEAVARASLI-PEFSDGFWTGSQLACWTNSETPWSYFPKISIYLRDENSSRSFRIT 297 (383)
T ss_dssp -SSCEEECTTCSSEEEEHHHHHHHHHHHHHTTCS-SCCCHHHHHTSEEEEECSSSCGGGGSCCEEEEEECSSTTEEEEEE
T ss_pred -CccEEEEcCCccccCCHHHHHHHHHHHhhhccc-ccCccccccccccccccCCcccHhhCCcEEEEECCCCCCceEEEE
Confidence 467999999999999999999999999987531 111 111 113489876544445799999999854 3799
Q ss_pred eCCCCeEEEecC--CCceEEE--EEecCCCceeecHhhhcceEEEEECCCCEEEEeeCCC
Q 011042 440 LPASNFLIPVDD--AGTFCFA--FAPSPSGLSIIGNIQQEGIQISFDGANGFVGFGPNVC 495 (495)
Q Consensus 440 l~~~~y~~~~~~--~~~~Cl~--~~~~~~~~~IlG~~fl~~~yvvfD~~~~~IGFa~~~C 495 (495)
|++++|+++..+ .+..|++ +.+. .+.||||++|||++|+|||++++|||||+++|
T Consensus 298 l~~~~yi~~~~~~~~~~~C~~~~i~~~-~~~~ILG~~fl~~~yvvfD~~~~rIGfA~~~c 356 (383)
T 2ewy_A 298 ILPQLYIQPMMGAGLNYECYRFGISPS-TNALVIGATVMEGFYVIFDRAQKRVGFAASPC 356 (383)
T ss_dssp ECHHHHEEEECCCTTCSEEEEESEEEE-SSCEEECHHHHTTEEEEEETTTTEEEEEECTT
T ss_pred EChHHheeecccCCCCceeEEEEecCC-CCcEEEChHHhCCeeEEEECCCCeEEEEeccC
Confidence 999999998742 3568975 4443 35799999999999999999999999999999
No 30
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ...
Probab=100.00 E-value=1.2e-53 Score=443.24 Aligned_cols=309 Identities=24% Similarity=0.400 Sum_probs=248.3
Q ss_pred cceEEEEEeeCCCCceeeEEEecCCCceeEecCCCCCcccCCCCccCCCCCCccccccCCChhcccccCCCCCCCCceee
Q 011042 153 SGEYFVRIGVGSPPRSQYMVIDSGSDIVWVQCQPCSQCYKQSDPVFDPADSASFSGVSCSSAVCDRLENAGCHAGRCRYE 232 (495)
Q Consensus 153 ~~~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~~C~~~~~~~~ 232 (495)
+..|+++|.||||+|++.|+|||||+++||+|.+|..| ++.|||++|+||+.. .|.|.
T Consensus 20 ~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~c~~~----~~~y~~~~SsT~~~~------------------~~~~~ 77 (395)
T 2qp8_A 20 GQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFL----HRYYQRQLSSTYRDL------------------RKGVY 77 (395)
T ss_dssp TTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCCTTC----SCCCCGGGCTTCEEE------------------EEEEE
T ss_pred CceEEEEEEecCCCceEEEEEecCCCceEEECCCCccc----cCCcCcccCCCceeC------------------CceEE
Confidence 56899999999999999999999999999999998655 578999999999986 58999
Q ss_pred eeeCCCCeEEEEEEEEEEEEC-CEEee-eeEEEEEEecCCCC---CCcceEEeeCCCCCCccc--------ccc---Ccc
Q 011042 233 VSYGDGSYTKGTLALETLTIG-RTVVK-NVAIGCGHKNQGMF---VGAAGLLGLGGGSMSLVG--------QLG---GQT 296 (495)
Q Consensus 233 ~~YgdGs~~~G~~~~Dtvt~g-~~~~~-~~~fG~~~~~~g~f---~~~~GIlGLg~~~~s~~~--------ql~---~~~ 296 (495)
+.|++|+. .|.+++|+|+|+ +..++ .+.|++.....+.| ...+||||||++.++.+. ++. .+
T Consensus 78 i~Yg~Gs~-~G~~~~Dtv~ig~g~~~~~~~~~~~~~~~~~~f~~~~~~dGIlGLg~~~~s~~~~~~~~~~~~l~~q~~i- 155 (395)
T 2qp8_A 78 VPYTQGKW-EGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV- 155 (395)
T ss_dssp EECSSCEE-EEEEEEEEEECTTSCSCEEEEEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTSCCHHHHHHHHSCC-
T ss_pred EEECCcEE-EEEEEeEEEEECCCCCceEEEEEEEEEccCcccccccCccceEEcCchhhccCCCCCCCHHHHHHHccCC-
Confidence 99999997 899999999997 54443 36788887766655 467999999998875432 222 23
Q ss_pred CCeEEEEeecCC---------CCCcceEEecccC---CCCCceEEecccCCCCCeEEEEEeeeeEecCeeeccccccccc
Q 011042 297 GGAFSYCLVSRG---------TGSSGSLVFGREA---LPVGAAWVPLVRNPRAPSFYYVGLSGLGVGGMRIPISEDLFRL 364 (495)
Q Consensus 297 ~~~FS~cL~~~~---------~~~~G~L~fGg~~---~~~~~~~tpl~~~~~~~~~y~v~l~gisvgg~~l~i~~~~~~~ 364 (495)
.++||+||.+.. ....|.|+||+.| +.|++.|+|+. ...||.|.+++|+||++.+.++...|.
T Consensus 156 ~~~FS~~L~~~~~~~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~----~~~~~~v~l~~i~v~g~~~~~~~~~~~- 230 (395)
T 2qp8_A 156 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIR----REWYYEVIIVRVEINGQDLKMDCKEYN- 230 (395)
T ss_dssp CSCEEEEECCCSSCCCHHHHHHSCCEEEEETSCCGGGEEEEEEEEECC----SBTTBBCCEEEEEETTEECCCCGGGGG-
T ss_pred cceEEEEeccccccccccccccCCCcEEEECCcCcccccCceEEeccC----CCceEEEEEEEEEECCEEcccCccccC-
Confidence 379999997531 1137999999987 67899999995 356899999999999999877665553
Q ss_pred cccCCCcEEEccCCceeeecHHHHHHHHHHHHHhhCCCCCCCCcc--cccccccccCcccccccEEEEEEeCCC-----E
Q 011042 365 TQMGDDGVVMDTGTAVTRLPTPAYEAFRDAFVAQTGNLPRASGVS--IFDTCYNLSGFVSVRVPTVSFYFSGGP-----V 437 (495)
Q Consensus 365 ~~~g~~~~iiDSGTt~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~C~~~~~~~~~~~P~i~f~f~gg~-----~ 437 (495)
...+||||||++++||+++|++|++++.+.........++. ...+|+.........+|+|+|+|+|+. +
T Consensus 231 ----~~~aiiDSGTt~~~lP~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~~~~ 306 (395)
T 2qp8_A 231 ----YDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFR 306 (395)
T ss_dssp ----SSCEEECTTCCSEEEEHHHHHHHHHHHHHHTTTSCCCHHHHTTCSCEEESTTCCCGGGSCCEEEEEECSSTTEEEE
T ss_pred ----CceEEEEcCCCcEecCHHHHHHHHHHHhhhcccccCCccccccccccccccccchHhhCCcEEEEEccCCCCceEE
Confidence 46799999999999999999999999998853111111110 123898865444457999999998543 7
Q ss_pred EEeCCCCeEEEecC---CCceEE--EEEecCCCceeecHhhhcceEEEEECCCCEEEEeeCCC
Q 011042 438 LTLPASNFLIPVDD---AGTFCF--AFAPSPSGLSIIGNIQQEGIQISFDGANGFVGFGPNVC 495 (495)
Q Consensus 438 ~~l~~~~y~~~~~~---~~~~Cl--~~~~~~~~~~IlG~~fl~~~yvvfD~~~~~IGFa~~~C 495 (495)
++|++++|+++..+ ....|+ ++.+. .+.||||++|||++|+|||++++|||||+++|
T Consensus 307 ~~l~p~~yi~~~~~~~~~~~~C~~~~i~~~-~~~~ILG~~fl~~~yvvfD~~~~rIGfA~~~c 368 (395)
T 2qp8_A 307 ITILPQQYLRPVEDVATSQDDCYKFAISQS-STGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 368 (395)
T ss_dssp EEECHHHHEEEECCTTCCSCEEEEECEEEE-SSCEEECHHHHTTEEEEEETTTTEEEEEEETT
T ss_pred EEECHHHhEeecccCCCCCceEEEEEecCC-CCcEEEChHHhCCeeEEEECCCCEEEEEeccC
Confidence 99999999998653 235896 45543 35799999999999999999999999999999
No 31
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ...
Probab=100.00 E-value=1.8e-52 Score=435.52 Aligned_cols=310 Identities=23% Similarity=0.388 Sum_probs=246.9
Q ss_pred cceEEEEEeeCCCCceeeEEEecCCCceeEecCCCCCcccCCCCccCCCCCCccccccCCChhcccccCCCCCCCCceee
Q 011042 153 SGEYFVRIGVGSPPRSQYMVIDSGSDIVWVQCQPCSQCYKQSDPVFDPADSASFSGVSCSSAVCDRLENAGCHAGRCRYE 232 (495)
Q Consensus 153 ~~~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~~C~~~~~~~~ 232 (495)
..+|+++|+||||+|++.|+|||||+++||+|.+| | +.++.|||++|+||+.. +|.|.
T Consensus 27 ~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c--~--~~~~~y~~~~SsT~~~~------------------~~~~~ 84 (402)
T 3vf3_A 27 GQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPH--P--FLHRYYQRQLSSTYRDL------------------RKGVY 84 (402)
T ss_dssp TTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCC--T--TCSCCCCGGGCTTCEEE------------------EEEEE
T ss_pred CCEEEEEEEECCCCeEEEEEEeCCCCceEEccCCC--C--cccCCcCcccCcccccC------------------CCEEE
Confidence 35899999999999999999999999999999988 4 35789999999999996 58999
Q ss_pred eeeCCCCeEEEEEEEEEEEEC-CEEee-eeEEEEEEecCCCC---CCcceEEeeCCCCCCccc--------ccc---Ccc
Q 011042 233 VSYGDGSYTKGTLALETLTIG-RTVVK-NVAIGCGHKNQGMF---VGAAGLLGLGGGSMSLVG--------QLG---GQT 296 (495)
Q Consensus 233 ~~YgdGs~~~G~~~~Dtvt~g-~~~~~-~~~fG~~~~~~g~f---~~~~GIlGLg~~~~s~~~--------ql~---~~~ 296 (495)
+.|++|+. .|.+++|+|+|+ +..+. .+.|+|.+...+.| ...+||||||++.++... +|. .+
T Consensus 85 i~Yg~Gs~-~G~~~~D~v~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~~~L~~q~~i- 162 (402)
T 3vf3_A 85 VPYTQGKW-EGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV- 162 (402)
T ss_dssp EECSSCEE-EEEEEEEEEECTTSCSCEEEEEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTSCCHHHHHHHHSCC-
T ss_pred EEECcEEE-EEEEEEEEEEECCccccceeeeEEEEEccccccccCCCccceEEcCchhhcccCCcCCcHHHHHHHccCC-
Confidence 99999996 999999999997 44444 34588888776655 467999999998876543 232 24
Q ss_pred CCeEEEEeecC----C-----CCCcceEEecccC---CCCCceEEecccCCCCCeEEEEEeeeeEecCeeeccccccccc
Q 011042 297 GGAFSYCLVSR----G-----TGSSGSLVFGREA---LPVGAAWVPLVRNPRAPSFYYVGLSGLGVGGMRIPISEDLFRL 364 (495)
Q Consensus 297 ~~~FS~cL~~~----~-----~~~~G~L~fGg~~---~~~~~~~tpl~~~~~~~~~y~v~l~gisvgg~~l~i~~~~~~~ 364 (495)
.++||+||.+. + ....|.|+||++| +.+++.|+|+. ...||.|.+++|+||++.+.++...+.
T Consensus 163 ~~~FS~~l~~~~~~~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~----~~~~w~v~l~~i~v~g~~~~~~~~~~~- 237 (402)
T 3vf3_A 163 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIR----REWYYEVIIVRVEINGQDLKMDCKEYN- 237 (402)
T ss_dssp CSCEEEEECCCC-------------EEEEESSCCGGGEEEEEEEEECS----SBTTBEECEEEEEETTEECCCCGGGGG-
T ss_pred ccceEEEeecccccccccccccCCCCEEEeCCcCcccccCceEEEeCC----cCcEEEEEEeEEEECCEEecccccccC-
Confidence 38999999742 1 1247999999988 67899999995 357899999999999999887655443
Q ss_pred cccCCCcEEEccCCceeeecHHHHHHHHHHHHHhhCCCCCCCCcc--cccccccccCcccccccEEEEEEeCCC-----E
Q 011042 365 TQMGDDGVVMDTGTAVTRLPTPAYEAFRDAFVAQTGNLPRASGVS--IFDTCYNLSGFVSVRVPTVSFYFSGGP-----V 437 (495)
Q Consensus 365 ~~~g~~~~iiDSGTt~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~C~~~~~~~~~~~P~i~f~f~gg~-----~ 437 (495)
...+||||||++++||+++|++|++++.+.....+...+.. .+.+|+.........+|+|+|+|+|+. +
T Consensus 238 ----~~~aiiDSGTt~~~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~~~~ 313 (402)
T 3vf3_A 238 ----YDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFR 313 (402)
T ss_dssp ----SSCEEECTTCCSEEEEHHHHHHHHHHHHHHTTTSCCCTTGGGTCSCEEEETTCCCGGGSCCEEEEEECSSTTEEEE
T ss_pred ----CCeEEEECCCCcccCCHHHHHHHHHHHhhhccccccCccccccccccccccccchHhhCCceEEEEecCCCCceEE
Confidence 56799999999999999999999999999853111111211 134899875444457999999999543 5
Q ss_pred EEeCCCCeEEEecCC---CceEEEEEe-cCCCceeecHhhhcceEEEEECCCCEEEEeeCCC
Q 011042 438 LTLPASNFLIPVDDA---GTFCFAFAP-SPSGLSIIGNIQQEGIQISFDGANGFVGFGPNVC 495 (495)
Q Consensus 438 ~~l~~~~y~~~~~~~---~~~Cl~~~~-~~~~~~IlG~~fl~~~yvvfD~~~~~IGFa~~~C 495 (495)
++|++++|+++.... ...|++|.. ...+.||||++|||++|+|||++++|||||+++|
T Consensus 314 ~~l~~~~yi~~~~~~~~~~~~C~~~~~~~~~~~~ILG~~fl~~~yvvfD~~~~rIGfA~~~c 375 (402)
T 3vf3_A 314 ITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 375 (402)
T ss_dssp EEECHHHHEEECCCGGGTTEEEEEECEEEESSCEEECHHHHTTEEEEEEGGGTEEEEEEETT
T ss_pred EEECHHHheehhccCCCCCceEEEEeccCCCCcEEEChHHhCCeEEEEECCCCEEEEEeccc
Confidence 999999999987532 148986432 2345799999999999999999999999999999
No 32
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2
Probab=100.00 E-value=3.5e-52 Score=423.84 Aligned_cols=297 Identities=21% Similarity=0.368 Sum_probs=241.4
Q ss_pred ceeeeecccCCCcceEEEEEeeCCCCceeeEEEecCCCceeEecCCCCCcccCCCCccCCCCCCccccccCCChhccccc
Q 011042 141 FGTDVVSGMDQGSGEYFVRIGVGSPPRSQYMVIDSGSDIVWVQCQPCSQCYKQSDPVFDPADSASFSGVSCSSAVCDRLE 220 (495)
Q Consensus 141 ~~~p~~~~~~~~~~~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~ 220 (495)
.++|+.+. +.+|+++|.||||+|++.|+|||||+++||+|. +.|||++|+++.
T Consensus 3 ~~~~l~n~----~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~----------~~y~~s~Ss~~~------------- 55 (340)
T 1wkr_A 3 GSVPATNQ----LVDYVVNVGVGSPATTYSLLVDTGSSNTWLGAD----------KSYVKTSTSSAT------------- 55 (340)
T ss_dssp EEEEEEEC----SSCEEEEEEETTTTEEEEEEEETTCCCCEECSS----------SCCCCCTTCEEE-------------
T ss_pred ccEeeecc----CcEEEEEEEECCCCcEEEEEEeCCChhheecCC----------CccCCcCCcccc-------------
Confidence 35677762 468999999999999999999999999999874 479999888643
Q ss_pred CCCCCCCCceeeeeeCCCCeEEEEEEEEEEEECCEEeeeeEEEEEEecCCCCCCcceEEeeCCCCCCccc----------
Q 011042 221 NAGCHAGRCRYEVSYGDGSYTKGTLALETLTIGRTVVKNVAIGCGHKNQGMFVGAAGLLGLGGGSMSLVG---------- 290 (495)
Q Consensus 221 ~~~C~~~~~~~~~~YgdGs~~~G~~~~Dtvt~g~~~~~~~~fG~~~~~~g~f~~~~GIlGLg~~~~s~~~---------- 290 (495)
.|.|.+.|++|+ +.|.+++|+|+|++.+++++.|||++...+ |...+||||||++.+++..
T Consensus 56 -------~~~~~i~Yg~Gs-~~G~~~~Dtv~~g~~~v~~~~fg~~~~~~~-~~~~~GilGLg~~~~s~~~~~~~~~~~~~ 126 (340)
T 1wkr_A 56 -------SDKVSVTYGSGS-FSGTEYTDTVTLGSLTIPKQSIGVASRDSG-FDGVDGILGVGPVDLTVGTLSPHTSTSIP 126 (340)
T ss_dssp -------EEEEEEECSSCE-EEEEEEEEEEEETTEEEEEEEEEEEEEEES-CTTCSEEEECSCGGGGTTSEESCTTCCCC
T ss_pred -------CceEEEEECCcE-EEEEEEEEEEEECCEEEcceEEEEEEccCC-CcCCCcEEECCccccccccccccccccCC
Confidence 489999999998 589999999999999999999999999866 5678999999998876531
Q ss_pred ----cc---cCccCCeEEEEeecCCC--CCcceEEecccC---CCCCceEEecccCCCCCeEEEEEeeeeEecC-eeecc
Q 011042 291 ----QL---GGQTGGAFSYCLVSRGT--GSSGSLVFGREA---LPVGAAWVPLVRNPRAPSFYYVGLSGLGVGG-MRIPI 357 (495)
Q Consensus 291 ----ql---~~~~~~~FS~cL~~~~~--~~~G~L~fGg~~---~~~~~~~tpl~~~~~~~~~y~v~l~gisvgg-~~l~i 357 (495)
++ +.+.+++||+||.+..+ ...|.|+||+.| +.|++.|+|++.++....||.|. ++|+|++ +.+..
T Consensus 127 ~~~~~l~~~g~i~~~~FS~~l~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~~~w~v~-~~i~v~~~~~l~~ 205 (340)
T 1wkr_A 127 TVTDNLFSQGTIPTNLLAVSFEPTTSESSTNGELTFGATDSSKYTGSITYTPITSTSPASAYWGIN-QSIRYGSSTSILS 205 (340)
T ss_dssp CHHHHHHHTTSSSSSEEEEECCCCSSSSEEEEEEEESSCCGGGCSSCCEEEECCSSTTGGGSSEEE-EEEEETTTEEEEE
T ss_pred CHHHHHHHcCCCCCCEEEEEecCCCCCCCCCcEEEEcccChhhcccceEEEECccCCCCcceEEEE-eeEEECCCeEccC
Confidence 22 22567999999986422 247999999987 78999999997654336799999 9999998 77631
Q ss_pred ccccccccccCCCcEEEccCCceeeecHHHHHHHHHHHHHhhCCCCCCCCcccccccccccCcccccccEEEEEEeCCCE
Q 011042 358 SEDLFRLTQMGDDGVVMDTGTAVTRLPTPAYEAFRDAFVAQTGNLPRASGVSIFDTCYNLSGFVSVRVPTVSFYFSGGPV 437 (495)
Q Consensus 358 ~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~gg~~ 437 (495)
...+||||||++++||+++|++|.+++++.. ....+...+ +|... ..+|+|+|+|+ |++
T Consensus 206 -----------~~~aiiDSGTt~~~lP~~~~~~l~~~~~a~~---~~~~g~~~~-~C~~~-----~~~p~i~f~f~-g~~ 264 (340)
T 1wkr_A 206 -----------STAGIVDTGTTLTLIASDAFAKYKKATGAVA---DNNTGLLRL-TTAQY-----ANLQSLFFTIG-GQT 264 (340)
T ss_dssp -----------EEEEEECTTBCSEEECHHHHHHHHHHHTCEE---CTTTSSEEE-CHHHH-----HTCCCEEEEET-TEE
T ss_pred -----------CCeEEEeCCcccccCCHHHHHHHHHhhCCEE---cCCCCeEEe-ecccc-----ccCCcEEEEEC-CEE
Confidence 2469999999999999999999998887653 222233333 67543 57899999997 899
Q ss_pred EEeCCCCeEEEecC------CCceEE-EEEecC-----CCceeecHhhhcceEEEEECCCCEEEEeeCCC
Q 011042 438 LTLPASNFLIPVDD------AGTFCF-AFAPSP-----SGLSIIGNIQQEGIQISFDGANGFVGFGPNVC 495 (495)
Q Consensus 438 ~~l~~~~y~~~~~~------~~~~Cl-~~~~~~-----~~~~IlG~~fl~~~yvvfD~~~~~IGFa~~~C 495 (495)
++|++++|+++... ....|+ +|.+.+ +..||||++|||++|+|||++++|||||+++|
T Consensus 265 ~~i~~~~yi~~~~~~~~~g~~~~~c~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~~ 334 (340)
T 1wkr_A 265 FELTANAQIWPRNLNTAIGGSASSVYLIVGDLGSDSGEGLDFINGLTFLERFYSVYDTTNKRLGLATTSF 334 (340)
T ss_dssp EEECTGGGBCCGGGGGGGTCCSSCEEBCEEECSSCTTSSCCEEECHHHHTSEEEEEETTTTEEEEEECTT
T ss_pred EEEcHHHhccccccccccCCCCceEEEEEecCCCCCCCCcceEeChHhhhheEEEEeCCCCeEEEEecCC
Confidence 99999999987531 124674 776531 23699999999999999999999999999987
No 33
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A*
Probab=100.00 E-value=2.9e-52 Score=440.46 Aligned_cols=311 Identities=24% Similarity=0.401 Sum_probs=250.3
Q ss_pred CcceEEEEEeeCCCCceeeEEEecCCCceeEecCCCCCcccCCCCccCCCCCCccccccCCChhcccccCCCCCCCCcee
Q 011042 152 GSGEYFVRIGVGSPPRSQYMVIDSGSDIVWVQCQPCSQCYKQSDPVFDPADSASFSGVSCSSAVCDRLENAGCHAGRCRY 231 (495)
Q Consensus 152 ~~~~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~~C~~~~~~~ 231 (495)
.+.+|+++|+||||+|+++|+|||||+++||+|.+| | +.++.|||++|+||+.. +|.|
T Consensus 72 ~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWV~~~~c--c--~~~~~y~~~~SsT~~~~------------------~~~~ 129 (455)
T 3lpj_A 72 SGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPH--P--FLHRYYQRQLSSTYRDL------------------RKGV 129 (455)
T ss_dssp TTTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCC--T--TCSCCCCGGGCTTCEEE------------------EEEE
T ss_pred CCCEEEEEEEECCCCeEEEEEEcCCCcceEEecccc--c--ccCCcccCCCCCCcccC------------------CccE
Confidence 345899999999999999999999999999999988 5 35789999999999996 5899
Q ss_pred eeeeCCCCeEEEEEEEEEEEECC-EEee-eeEEEEEEecCCCC---CCcceEEeeCCCCCCccc--------ccc---Cc
Q 011042 232 EVSYGDGSYTKGTLALETLTIGR-TVVK-NVAIGCGHKNQGMF---VGAAGLLGLGGGSMSLVG--------QLG---GQ 295 (495)
Q Consensus 232 ~~~YgdGs~~~G~~~~Dtvt~g~-~~~~-~~~fG~~~~~~g~f---~~~~GIlGLg~~~~s~~~--------ql~---~~ 295 (495)
.+.|++|+. .|.+++|+|+|++ ..+. .+.|+|++...+.| ...+||||||++.++... ++. .+
T Consensus 130 ~i~Yg~Gs~-~G~~~~Dtv~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~~~L~~q~~i 208 (455)
T 3lpj_A 130 YVPYTQGKW-EGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 208 (455)
T ss_dssp EEECSSCEE-EEEEEEEEEECTTSCSCEEEEEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTSCCHHHHHHHHSCC
T ss_pred EEEeCCeEE-EEEEEEEEEEECCCcceeeEEEEEEEEccCcccccCCCcceEEEeCccccccccCCCCcHHHHHHHccCC
Confidence 999999997 8999999999974 2222 36789988877655 467999999998876543 222 24
Q ss_pred cCCeEEEEeecCC---------CCCcceEEecccC---CCCCceEEecccCCCCCeEEEEEeeeeEecCeeecccccccc
Q 011042 296 TGGAFSYCLVSRG---------TGSSGSLVFGREA---LPVGAAWVPLVRNPRAPSFYYVGLSGLGVGGMRIPISEDLFR 363 (495)
Q Consensus 296 ~~~~FS~cL~~~~---------~~~~G~L~fGg~~---~~~~~~~tpl~~~~~~~~~y~v~l~gisvgg~~l~i~~~~~~ 363 (495)
.++||+||.+.. ....|.|+||++| +.|++.|+|+. ...||.|.+++|+||++.+.++...+.
T Consensus 209 -~~~FS~~L~~~~~~~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~----~~~~w~v~l~~i~v~g~~~~~~~~~~~ 283 (455)
T 3lpj_A 209 -PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIR----REWYYEVIIVRVEINGQDLKMDCKEYN 283 (455)
T ss_dssp -CSCEEEEECCCSSCCCHHHHHHSCCEEEEETSCCGGGEEEEEEEEECC----SBTTBBCCEEEEEETTEECCCCGGGGG
T ss_pred -CceeEEEeccccccccccccccCCCceEEECCcCcccccCceEEEecC----CCceeEEEEeEEEECCEEccccccccC
Confidence 389999997531 1247999999988 67899999995 457899999999999999887655443
Q ss_pred ccccCCCcEEEccCCceeeecHHHHHHHHHHHHHhhCCCCCCCCc--ccccccccccCcccccccEEEEEEeCCC-----
Q 011042 364 LTQMGDDGVVMDTGTAVTRLPTPAYEAFRDAFVAQTGNLPRASGV--SIFDTCYNLSGFVSVRVPTVSFYFSGGP----- 436 (495)
Q Consensus 364 ~~~~g~~~~iiDSGTt~t~lp~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~C~~~~~~~~~~~P~i~f~f~gg~----- 436 (495)
...+||||||++++||+++|++|++++.+.........++ ..+.+|+.........+|+|+|+|+|+.
T Consensus 284 -----~~~aiiDSGTt~~~lP~~~~~~i~~~i~~~~~~~~~~~~~~~g~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~~~ 358 (455)
T 3lpj_A 284 -----YDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSF 358 (455)
T ss_dssp -----SSCEEECTTSSSEEEEHHHHHHHHHHHHHHTTTSCCCHHHHTTCSCEEESTTCCCGGGSCCEEEEEECSSTTEEE
T ss_pred -----CCeEEEECCCcceeCCHHHHHHHHHHhhhhccccccCcccccCcceecccccCCchhcCCcEEEEEcCCCcCceE
Confidence 5679999999999999999999999999985311111111 0134899875544456999999999543
Q ss_pred EEEeCCCCeEEEecCC---CceEEEEEec-CCCceeecHhhhcceEEEEECCCCEEEEeeCCC
Q 011042 437 VLTLPASNFLIPVDDA---GTFCFAFAPS-PSGLSIIGNIQQEGIQISFDGANGFVGFGPNVC 495 (495)
Q Consensus 437 ~~~l~~~~y~~~~~~~---~~~Cl~~~~~-~~~~~IlG~~fl~~~yvvfD~~~~~IGFa~~~C 495 (495)
+++|++++|+++..+. ...|++|... ..+.||||++|||++|+|||++++|||||+++|
T Consensus 359 ~~~l~~~~yi~~~~~~~~~~~~C~~f~~~~~~~~~ILG~~fl~~~yvvfD~~~~rIGfA~~~c 421 (455)
T 3lpj_A 359 RITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 421 (455)
T ss_dssp EEEECHHHHEEEECCTTCCSCEEEEECEEEESSCEEECHHHHTTEEEEEETTTTEEEEEEETT
T ss_pred EEEECHHHheEeccCCCCCCceEEEEeccCCCCcEEEChHHhCCeEEEEECCCCEEEEEeccc
Confidence 5999999999987642 2589864322 345799999999999999999999999999999
No 34
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=100.00 E-value=7.4e-42 Score=330.75 Aligned_cols=220 Identities=24% Similarity=0.425 Sum_probs=186.6
Q ss_pred eeeeecccCCCcceEEEEEeeCCCCceeeEEEecCCCceeEecCCCC---CcccCCCCccCCCCCCccccccCCChhccc
Q 011042 142 GTDVVSGMDQGSGEYFVRIGVGSPPRSQYMVIDSGSDIVWVQCQPCS---QCYKQSDPVFDPADSASFSGVSCSSAVCDR 218 (495)
Q Consensus 142 ~~p~~~~~~~~~~~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~C~---~C~~~~~~~fdps~SsT~~~~~C~~~~C~~ 218 (495)
.+|+.+ +.+.+|+++|.||||+|++.|+|||||+++||+|.+|. .|. .++.|||++|+||+..
T Consensus 4 ~~~l~n---~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~~~~~C~--~~~~y~~~~SsT~~~~--------- 69 (239)
T 1b5f_A 4 VVALTN---DRDTSYFGEIGIGTPPQKFTVIFDTGSSVLWVPSSKCINSKACR--AHSMYESSDSSTYKEN--------- 69 (239)
T ss_dssp EEEEEE---ETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSCHHHH--TSCCBCGGGCTTCEEE---------
T ss_pred eeeeee---cCCCEEEEEEEECCCCeEEEEEEeCCCcceEEEcCCCCCCcccC--CCCCCCCccCCCeeeC---------
Confidence 466765 56789999999999999999999999999999999996 576 4679999999999986
Q ss_pred ccCCCCCCCCceeeeeeCCCCeEEEEEEEEEEEECCEEeeeeEEEEEEecCCC-C--CCcceEEeeCCCCCCccc--cc-
Q 011042 219 LENAGCHAGRCRYEVSYGDGSYTKGTLALETLTIGRTVVKNVAIGCGHKNQGM-F--VGAAGLLGLGGGSMSLVG--QL- 292 (495)
Q Consensus 219 ~~~~~C~~~~~~~~~~YgdGs~~~G~~~~Dtvt~g~~~~~~~~fG~~~~~~g~-f--~~~~GIlGLg~~~~s~~~--ql- 292 (495)
+|.|.+.|++|+. .|.+++|+|+|++..++++.|||++...+. | ...+||||||++.++.+. ++
T Consensus 70 ---------~~~~~i~Yg~Gs~-~G~~~~D~v~~g~~~v~~~~fg~~~~~~~~~f~~~~~~GilGLg~~~~s~p~~~~l~ 139 (239)
T 1b5f_A 70 ---------GTFGAIIYGTGSI-TGFFSQDSVTIGDLVVKEQDFIEATDEADNVFLHRLFDGILGLSFQTISVPVWYNML 139 (239)
T ss_dssp ---------EEEEEEECSSCEE-EEEEEEEEEEETTEEEEEEEEEEEEEECHHHHTTCSCCEEEECSCCSSSCCHHHHHH
T ss_pred ---------CcEEEEEECCCcE-EEEEEEEEEEECCcEEccEEEEEEEeccCccccccCcceEEecCccccccHHHHHHH
Confidence 5889999999985 899999999999999999999999987542 2 568999999999987432 22
Q ss_pred --cCccCCeEEEEeecCCC-CCcceEEecccC---CCCCceEEecccCCCCCeEEEEEeeeeEecCeeeccccccccccc
Q 011042 293 --GGQTGGAFSYCLVSRGT-GSSGSLVFGREA---LPVGAAWVPLVRNPRAPSFYYVGLSGLGVGGMRIPISEDLFRLTQ 366 (495)
Q Consensus 293 --~~~~~~~FS~cL~~~~~-~~~G~L~fGg~~---~~~~~~~tpl~~~~~~~~~y~v~l~gisvgg~~l~i~~~~~~~~~ 366 (495)
..+..++||+||.+... ...|.|+||+.| +.+++.|+|+.. ..||.|.+++|+||++.+.+..
T Consensus 140 ~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l~~i~v~~~~~~~~~------- 208 (239)
T 1b5f_A 140 NQGLVKERRFSFWLNRNVDEEEGGELVFGGLDPNHFRGDHTYVPVTY----QYYWQFGIGDVLIGDKSTGFCA------- 208 (239)
T ss_dssp HTTCCSSSEEEEEECCSCSSSCCEEEEETSCCGGGEEEEEEEEEEEE----ETTEEEEECCEEETTEECCTTT-------
T ss_pred HCCCCCCCEEEEEEeCCCCCCCCeEEEECCcChhhccCceEEEEccc----CCeEEEEeeEEEECCEEecccC-------
Confidence 33667999999987532 247999999987 678999999963 4689999999999999876532
Q ss_pred cCCCcEEEccCCceeeecHHHHHHHHHHHHH
Q 011042 367 MGDDGVVMDTGTAVTRLPTPAYEAFRDAFVA 397 (495)
Q Consensus 367 ~g~~~~iiDSGTt~t~lp~~~~~~l~~~~~~ 397 (495)
....+||||||++++||+++|++|.+++++
T Consensus 209 -~~~~aiiDTGTt~~~lP~~~~~~i~~~iga 238 (239)
T 1b5f_A 209 -PGCQAFADSGTSLLSGPTAIVTQINHAIGA 238 (239)
T ss_dssp -TCEEEEECTTCSSEEECHHHHHHHHHHTTC
T ss_pred -CCCEEEEecCcchhhCCHHHHHHHHHHhCC
Confidence 145799999999999999999999998754
No 35
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B*
Probab=100.00 E-value=3.8e-36 Score=290.91 Aligned_cols=218 Identities=21% Similarity=0.346 Sum_probs=176.1
Q ss_pred CCEEeeeeEEEEEEecCCC-C--CCcceEEeeCCCCCCcc------cccc---CccCCeEEEEeecCCCC-CcceEEecc
Q 011042 253 GRTVVKNVAIGCGHKNQGM-F--VGAAGLLGLGGGSMSLV------GQLG---GQTGGAFSYCLVSRGTG-SSGSLVFGR 319 (495)
Q Consensus 253 g~~~~~~~~fG~~~~~~g~-f--~~~~GIlGLg~~~~s~~------~ql~---~~~~~~FS~cL~~~~~~-~~G~L~fGg 319 (495)
|+.+++++.|||++...+. | ...+||||||++.++.. .++. .+.+++||+||.+..+. ..|.|+||+
T Consensus 1 gg~~v~~~~Fg~~~~~~~~~f~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg 80 (241)
T 1lya_B 1 GGVKVERQVFGEATKQPGITFIAAKFDGILGMAYPRISVNNVLPVFDNLMQQKLVDQNIFSFYLSRDPDAQPGGELMLGG 80 (241)
T ss_dssp CCEEEEEEEEEEEEECCSSTTTSCSSSEEEECSCGGGCGGGCCCHHHHHHHTTCSSSSEEEEEECSSTTCSSCEEEEETS
T ss_pred CCeEECCeEEEEEEEccCCccccccCCEEEECCcchhhccCCChHHHHHHHCCCCCCCEEEEEEeCCCCCCCCcEEEECC
Confidence 4678999999999998764 4 57899999999887643 2332 36789999999876432 379999999
Q ss_pred cC---CCCCceEEecccCCCCCeEEEEEeeeeEecCeeeccccccccccccCCCcEEEccCCceeeecHHHHHHHHHHHH
Q 011042 320 EA---LPVGAAWVPLVRNPRAPSFYYVGLSGLGVGGMRIPISEDLFRLTQMGDDGVVMDTGTAVTRLPTPAYEAFRDAFV 396 (495)
Q Consensus 320 ~~---~~~~~~~tpl~~~~~~~~~y~v~l~gisvgg~~l~i~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~~~~l~~~~~ 396 (495)
.| +.+++.|+|+. ...||.|.+++|+|+++.+... ....+||||||+++++|+++|++|.++++
T Consensus 81 ~d~~~~~g~l~~~p~~----~~~~~~v~l~~i~v~~~~~~~~---------~~~~aiiDSGTt~~~lP~~~~~~l~~~~~ 147 (241)
T 1lya_B 81 TDSKYYKGSLSYLNVT----RKAYWQVHLDQVEVASGLTLCK---------EGCEAIVDTGTSLMVGPVDEVRELQKAIG 147 (241)
T ss_dssp CCGGGEEEEEEEEECS----SBTTBEEEEEEEEETTSCEEST---------TCEEEEECTTCSSEEECHHHHHHHHHHHT
T ss_pred cCHHHcCCceEEEECc----cccEEEEEEeEEEECCeeEecc---------CCCEEEEECCCccccCCHHHHHHHHHHhC
Confidence 87 67899999995 4578999999999999875211 24669999999999999999999999986
Q ss_pred HhhCCCCCCCCcccccccccccCcccccccEEEEEEeCCCEEEeCCCCeEEEecCC-CceEE-EEEecC-----CCceee
Q 011042 397 AQTGNLPRASGVSIFDTCYNLSGFVSVRVPTVSFYFSGGPVLTLPASNFLIPVDDA-GTFCF-AFAPSP-----SGLSII 469 (495)
Q Consensus 397 ~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~gg~~~~l~~~~y~~~~~~~-~~~Cl-~~~~~~-----~~~~Il 469 (495)
+.. ...+.+.+ +|+.. ..+|+|+|+|+ |++++||+++|+++.... +..|+ +|++.+ .+.|||
T Consensus 148 ~~~----~~~g~~~~-~C~~~-----~~~p~i~f~f~-g~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~il 216 (241)
T 1lya_B 148 AVP----LIQGEYMI-PCEKV-----STLPAITLKLG-GKGYKLSPEDYTLKVSQAGKTLCLSGFMGMDIPPPSGPLWIL 216 (241)
T ss_dssp CEE----EETTEEEE-EGGGG-----GGSCCEEEEET-TEEEEECTTTSEEEETTTTSSEEEESEEECCCCTTTCCCEEE
T ss_pred Cee----ccCCcEEE-ECCCC-----ccCCeEEEEEC-CEEEEECHHHhEEEccCCCCCeeEEEEEecccCCCCCCeEEe
Confidence 653 12233333 78754 57899999996 899999999999987532 46897 688752 457999
Q ss_pred cHhhhcceEEEEECCCCEEEEeeCC
Q 011042 470 GNIQQEGIQISFDGANGFVGFGPNV 494 (495)
Q Consensus 470 G~~fl~~~yvvfD~~~~~IGFa~~~ 494 (495)
|++|||++|+|||++++|||||+++
T Consensus 217 G~~fl~~~y~vfD~~~~~igfA~~~ 241 (241)
T 1lya_B 217 GDVFIGRYYTVFDRDNNRVGFAEAA 241 (241)
T ss_dssp CHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred chHHhcceEEEEECCCCEEEEEEcC
Confidence 9999999999999999999999874
No 36
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A*
Probab=99.88 E-value=8.6e-23 Score=168.60 Aligned_cols=89 Identities=25% Similarity=0.588 Sum_probs=80.0
Q ss_pred eeeeecccCCCcceEEEEEeeCCCCceeeEEEecCCCceeEecCCCC----CcccCCCCccCCCCCCccccccCCChhcc
Q 011042 142 GTDVVSGMDQGSGEYFVRIGVGSPPRSQYMVIDSGSDIVWVQCQPCS----QCYKQSDPVFDPADSASFSGVSCSSAVCD 217 (495)
Q Consensus 142 ~~p~~~~~~~~~~~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~C~----~C~~~~~~~fdps~SsT~~~~~C~~~~C~ 217 (495)
..|+.+ +.+.+|+++|.||||+|++.|+|||||+++||+|.+|. .|. .++.|||++|+||+..
T Consensus 4 ~~~l~n---~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~~~C~--~~~~y~p~~SsT~~~~-------- 70 (97)
T 1lya_A 4 PEVLKN---YMDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACW--IHHKYNSDKSSTYVKN-------- 70 (97)
T ss_dssp EEEEEE---ETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCTTCHHHH--TSCCBCGGGCTTCEEE--------
T ss_pred eEeeEE---CCCCeEEEEEEECCCCeEEEEEEeCCCCceEEeEcCccCcccccC--CCCCCCchhCCCceeC--------
Confidence 456664 56789999999999999999999999999999999996 686 4689999999999986
Q ss_pred cccCCCCCCCCceeeeeeCCCCeEEEEEEEEEEEECC
Q 011042 218 RLENAGCHAGRCRYEVSYGDGSYTKGTLALETLTIGR 254 (495)
Q Consensus 218 ~~~~~~C~~~~~~~~~~YgdGs~~~G~~~~Dtvt~g~ 254 (495)
.|.|.+.|++|+ +.|.+++|+|+|++
T Consensus 71 ----------~~~~~i~Yg~Gs-~~G~~~~Dtv~i~g 96 (97)
T 1lya_A 71 ----------GTSFDIHYGSGS-LSGYLSQDTVSVPC 96 (97)
T ss_dssp ----------EEEEEEECSSCE-EEEEEEEEEEEESC
T ss_pred ----------CCcEEEEECCcE-EEEEEEEEEEEECC
Confidence 589999999999 58999999999975
No 37
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=99.62 E-value=4.1e-16 Score=126.01 Aligned_cols=76 Identities=28% Similarity=0.512 Sum_probs=64.3
Q ss_pred ccccccCcccccccEEEEEEeCCCEEEeCCCCeEEEecCC-CceEE-EEEec----CCCceeecHhhhcceEEEEECCCC
Q 011042 413 TCYNLSGFVSVRVPTVSFYFSGGPVLTLPASNFLIPVDDA-GTFCF-AFAPS----PSGLSIIGNIQQEGIQISFDGANG 486 (495)
Q Consensus 413 ~C~~~~~~~~~~~P~i~f~f~gg~~~~l~~~~y~~~~~~~-~~~Cl-~~~~~----~~~~~IlG~~fl~~~yvvfD~~~~ 486 (495)
+|... ..+|+|+|+|+ |++++|++++|+++.... +..|+ +|++. .++.||||++|||++|+|||++++
T Consensus 6 ~C~~~-----~~~P~i~f~~g-g~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~ILGd~Fl~~~y~vfD~~~~ 79 (87)
T 1b5f_B 6 DCNTL-----SSMPNVSFTIG-GKKFGLTPEQYILKVGKGEATQCISGFTAMDATLLGPLWILGDVFMRPYHTVFDYGNL 79 (87)
T ss_dssp CGGGG-----GGCCCEEEEET-TEEEEECHHHHEEEESCTTTCEEEESEEECCCBSSSBEEEECHHHHTTEEEEEETTTT
T ss_pred ECCCC-----CcCCcEEEEEC-CEEEEECHHHhEEEccCCCCCEEEEEEEECCCCCCCCeEEechHHhccEEEEEECCCC
Confidence 67543 67999999997 899999999999987532 46897 68874 245799999999999999999999
Q ss_pred EEEEeeCC
Q 011042 487 FVGFGPNV 494 (495)
Q Consensus 487 ~IGFa~~~ 494 (495)
|||||+++
T Consensus 80 riGfA~~~ 87 (87)
T 1b5f_B 80 LVGFAEAA 87 (87)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEcC
Confidence 99999864
No 38
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae}
Probab=93.25 E-value=0.13 Score=44.39 Aligned_cols=91 Identities=13% Similarity=0.198 Sum_probs=53.6
Q ss_pred CcceEEEEEeeCCCCceeeEEEecCCCceeEecCCCCCcccCCCCccCCCCCCccccccCCChhcccccCCCCCCCCcee
Q 011042 152 GSGEYFVRIGVGSPPRSQYMVIDSGSDIVWVQCQPCSQCYKQSDPVFDPADSASFSGVSCSSAVCDRLENAGCHAGRCRY 231 (495)
Q Consensus 152 ~~~~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~~C~~~~~~~ 231 (495)
..+.+++++.|+ ++++.+++|||++.+-+.-.-...+.- .+..+ ..+
T Consensus 23 ~~~~~~v~v~In--G~~~~~LvDTGAs~s~is~~~a~~lgl--~~~~~-----------------------------~~~ 69 (148)
T 2i1a_A 23 QVPMLYINIEIN--NYPVKAFVDTGAQTTIMSTRLAKKTGL--SRMID-----------------------------KRF 69 (148)
T ss_dssp CCCCCEEEEEET--TEEEEEEECTTCSSCEEEHHHHHHHTG--GGGCB-----------------------------CCC
T ss_pred ccceEEEEEEEC--CEEEEEEEECCCCccccCHHHHHHcCC--CccCC-----------------------------cce
Confidence 356789999999 899999999999998875322111110 00000 111
Q ss_pred e-eeeCCCC-eEEEEEEEEEEEECCEEeeeeEEEEEEecCCCCCCcceEEeeC
Q 011042 232 E-VSYGDGS-YTKGTLALETLTIGRTVVKNVAIGCGHKNQGMFVGAAGLLGLG 282 (495)
Q Consensus 232 ~-~~YgdGs-~~~G~~~~Dtvt~g~~~~~~~~fG~~~~~~g~f~~~~GIlGLg 282 (495)
. ..+|.|. ...|....+.+.+|+..++ +.|.+.. . +.+||||+-
T Consensus 70 ~~~a~g~g~~~~~~~~~~~~i~ig~~~~~-~~~~vl~--~----~~d~iLG~d 115 (148)
T 2i1a_A 70 IGEARGVGTGKIIGRIHQAQVKIETQYIP-CSFTVLD--T----DIDVLIGLD 115 (148)
T ss_dssp C-----------CEEEEEEEEEETTEEEE-EEEEEEC--S----SCSEEECHH
T ss_pred EEEEecCCCcccccEEEEEEEEECCEEec-eeEEEec--C----CCCeEecHH
Confidence 1 1223222 2246666788999998765 6666543 2 468999985
No 39
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae}
Probab=93.15 E-value=0.25 Score=42.67 Aligned_cols=26 Identities=12% Similarity=-0.018 Sum_probs=24.1
Q ss_pred ceeecHhhhcceEEEEECCCCEEEEe
Q 011042 466 LSIIGNIQQEGIQISFDGANGFVGFG 491 (495)
Q Consensus 466 ~~IlG~~fl~~~yvvfD~~~~~IGFa 491 (495)
..|||..||+.+-+..|+.+++|-|.
T Consensus 109 d~iLG~d~L~~~~~~ID~~~~~l~l~ 134 (148)
T 2i1a_A 109 DVLIGLDMLKRHLACVDLKENVLRIA 134 (148)
T ss_dssp SEEECHHHHHHTTCEEETTTTEEEET
T ss_pred CeEecHHHHhhCCEEEECCCCEEEEc
Confidence 38999999999999999999999885
No 40
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens}
Probab=91.22 E-value=0.24 Score=43.03 Aligned_cols=108 Identities=19% Similarity=0.249 Sum_probs=61.8
Q ss_pred EEEEEeeeeEecCeeeccccccccccccCCCcEEEccCCceeeecHHHHHHHHHHHHHhhC-CCC-CCCCcccccccccc
Q 011042 340 FYYVGLSGLGVGGMRIPISEDLFRLTQMGDDGVVMDTGTAVTRLPTPAYEAFRDAFVAQTG-NLP-RASGVSIFDTCYNL 417 (495)
Q Consensus 340 ~y~v~l~gisvgg~~l~i~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~~~~l~~~~~~~~~-~~~-~~~~~~~~~~C~~~ 417 (495)
.++|+ +.|||+.+. ++||||.+.+.++.+..+.+- +..... .+. ...+.... .+
T Consensus 24 ~l~v~---~~Ing~~v~---------------~LVDTGAs~s~Is~~~A~rlG--L~~~~~~~~~~~a~g~G~~-~~--- 79 (148)
T 3s8i_A 24 MLYIN---CKVNGHPLK---------------AFVDSGAQMTIMSQACAERCN--IMRLVDRRWAGVAKGVGTQ-RI--- 79 (148)
T ss_dssp CCEEE---EEETTEEEE---------------EEECTTCSSCEEEHHHHHHTT--CGGGEEGGGCEECCC---C-EE---
T ss_pred EEEEE---EEECCEEEE---------------EEEeCCCCcEeeCHHHHHHcC--CccccCcceeEEEEcCCcc-EE---
Confidence 34454 457888653 999999999999998887761 000000 000 00000000 01
Q ss_pred cCcccccccEEEEEEeCCCEEEeCCCCeEEEecCCCceE-EEEEecCCCceeecHhhhcceEEEEECCCCEEEEee
Q 011042 418 SGFVSVRVPTVSFYFSGGPVLTLPASNFLIPVDDAGTFC-FAFAPSPSGLSIIGNIQQEGIQISFDGANGFVGFGP 492 (495)
Q Consensus 418 ~~~~~~~~P~i~f~f~gg~~~~l~~~~y~~~~~~~~~~C-l~~~~~~~~~~IlG~~fl~~~yvvfD~~~~~IGFa~ 492 (495)
....+...+.++ +..+ .| +.+.+...-..|||..+|+.+-.+.|+++++|-|..
T Consensus 80 ----~g~v~~~~I~Ig-~~~~----------------~~~~~Vle~~~~d~LLGmD~L~~~~~~ID~~~~~L~l~~ 134 (148)
T 3s8i_A 80 ----IGRVHLAQIQIE-GDFL----------------QCSFSILEDQPMDMLLGLDMLRRHQCSIDLKKNVLVIGT 134 (148)
T ss_dssp ----EEEEEEEEEEET-TEEE----------------EEEEEEETTCSSSEEECHHHHHHTTCEEETTTTEEECTT
T ss_pred ----EEEEEEEEEEEC-CEEE----------------EEEEEEeCCCCcCeeccHHHHHhCCEEEEcCCCEEEEcc
Confidence 012334445554 3321 12 333433333489999999999999999999998864
No 41
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens}
Probab=85.19 E-value=1.6 Score=37.70 Aligned_cols=90 Identities=18% Similarity=0.246 Sum_probs=54.0
Q ss_pred ceEEEEEeeCCCCceeeEEEecCCCceeEecCCCCCcccCCCCccCCCCCCccccccCCChhcccccCCCCCCCCceee-
Q 011042 154 GEYFVRIGVGSPPRSQYMVIDSGSDIVWVQCQPCSQCYKQSDPVFDPADSASFSGVSCSSAVCDRLENAGCHAGRCRYE- 232 (495)
Q Consensus 154 ~~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~~C~~~~~~~~- 232 (495)
..|++++.|. ++++.+++|||++.+.+.-.-...|.-. .- . ...+.
T Consensus 23 ~~l~v~~~In--g~~v~~LVDTGAs~s~Is~~~A~rlGL~---~~----------~------------------~~~~~~ 69 (148)
T 3s8i_A 23 TMLYINCKVN--GHPLKAFVDSGAQMTIMSQACAERCNIM---RL----------V------------------DRRWAG 69 (148)
T ss_dssp CCCEEEEEET--TEEEEEEECTTCSSCEEEHHHHHHTTCG---GG----------E------------------EGGGCE
T ss_pred CEEEEEEEEC--CEEEEEEEeCCCCcEeeCHHHHHHcCCc---cc----------c------------------CcceeE
Confidence 4688999998 8999999999999998854322233100 00 0 00011
Q ss_pred eeeCC-CCeEEEEEEEEEEEECCEEeeeeEEEEEEecCCCCCCcceEEeeC
Q 011042 233 VSYGD-GSYTKGTLALETLTIGRTVVKNVAIGCGHKNQGMFVGAAGLLGLG 282 (495)
Q Consensus 233 ~~Ygd-Gs~~~G~~~~Dtvt~g~~~~~~~~fG~~~~~~g~f~~~~GIlGLg 282 (495)
...+- +....|......+.+++..++ ..|..... ...++|||+-
T Consensus 70 ~a~g~G~~~~~g~v~~~~I~Ig~~~~~-~~~~Vle~-----~~~d~LLGmD 114 (148)
T 3s8i_A 70 VAKGVGTQRIIGRVHLAQIQIEGDFLQ-CSFSILED-----QPMDMLLGLD 114 (148)
T ss_dssp ECCC---CEEEEEEEEEEEEETTEEEE-EEEEEETT-----CSSSEEECHH
T ss_pred EEEcCCccEEEEEEEEEEEEECCEEEE-EEEEEeCC-----CCcCeeccHH
Confidence 11222 233467777788999987653 44443321 2468999985
No 42
>1fmb_A EIAV protease; hydrolase (acid proteinase), RNA-directed DNA polymerase, AS protease, endonuclease, polyprotein; HET: HYB; 1.80A {Equine infectious anemia virus} SCOP: b.50.1.1 PDB: 2fmb_A*
Probab=80.60 E-value=1.4 Score=35.77 Aligned_cols=25 Identities=12% Similarity=0.222 Sum_probs=23.2
Q ss_pred EEEEeeCCCCceeeEEEecCCCceeEe
Q 011042 157 FVRIGVGSPPRSQYMVIDSGSDIVWVQ 183 (495)
Q Consensus 157 ~~~i~iGTP~q~~~l~~DTGS~~~Wv~ 183 (495)
++.|.|| +|.+.+++|||.+++-+.
T Consensus 10 ~v~v~I~--Gq~~e~LLDTGAD~TVl~ 34 (104)
T 1fmb_A 10 TTIVLIN--DTPLNVLLDTGADTSVLT 34 (104)
T ss_dssp EEEEEET--TEEEEEEECTTCSSCEEE
T ss_pred EEEEEEC--CEEEEEEeccCCCcEEEc
Confidence 5889999 899999999999999986
No 43
>2hs1_A HIV-1 protease; ultra-high resolution active site surface binding site, HYDR; HET: 017; 0.84A {Human immunodeficiency virus 1} PDB: 3nu4_A* 3tl9_A* 3tkw_A* 3tkg_A* 3ndu_A* 3ndt_A* 3k4v_A* 3a2o_A* 1fgc_C* 2a1e_A* 2aod_A* 2aoi_A* 2aoj_A* 2hb3_A* 2ien_A* 1sdt_A* 2z4o_A* 2zye_A* 2nmw_A* 3b7v_A* ...
Probab=79.97 E-value=1.5 Score=35.18 Aligned_cols=27 Identities=22% Similarity=0.398 Sum_probs=24.0
Q ss_pred EEEEeeCCCCceeeEEEecCCCceeEecC
Q 011042 157 FVRIGVGSPPRSQYMVIDSGSDIVWVQCQ 185 (495)
Q Consensus 157 ~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~ 185 (495)
++.|.|| .|.+.+++|||.|++-+.-.
T Consensus 10 ~vtvkI~--Gq~~eaLLDTGAD~TVl~~~ 36 (99)
T 2hs1_A 10 LVTIKIG--GQLKEALLDTGADDTIIEEM 36 (99)
T ss_dssp EEEEEET--TEEEEEEECTTCSSEEESCC
T ss_pred EEEEEEC--CEEEEEEeccCCCcEEEecc
Confidence 5789999 89999999999999998643
No 44
>3ec0_A Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1.18A {Human immunodeficiency virus type 2} SCOP: b.50.1.1 PDB: 1hii_A* 1hsi_A 1hsh_A* 1idb_A* 1jld_A* 2mip_A 1ida_A* 3ebz_A* 3ecg_A* 3s45_A* 4upj_A* 1ivq_A* 1ivp_A 2hpf_A 3upj_A* 2hpe_A* 5upj_A* 6upj_A* 1sip_A 1tcw_A* ...
Probab=74.15 E-value=3.1 Score=33.34 Aligned_cols=27 Identities=19% Similarity=0.180 Sum_probs=23.9
Q ss_pred EEEEeeCCCCceeeEEEecCCCceeEecC
Q 011042 157 FVRIGVGSPPRSQYMVIDSGSDIVWVQCQ 185 (495)
Q Consensus 157 ~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~ 185 (495)
++.|.|| +|.+.+++|||.|++-+...
T Consensus 10 ~vti~I~--Gq~~e~LLDTGAD~TVl~~~ 36 (99)
T 3ec0_A 10 VVTAYIE--GQPVEVLLDTGADDSIVAGI 36 (99)
T ss_dssp EEEEEET--TEEEEEEECTTCSSCEESSC
T ss_pred eEEEEEC--CEEEEEEEecCCCceEEcCc
Confidence 5789999 99999999999999998543
No 45
>2hah_A Protease, retropepsin; retroviral, aspartyl, hydrolase-hydrolase complex; HET: 3TL; 1.70A {Feline immunodeficiency virus} PDB: 3ogp_A* 3ogq_A* 2fiv_A* 6fiv_A* 3fiv_A* 5fiv_A* 4fiv_A* 1fiv_A* 1b11_A*
Probab=69.74 E-value=3.5 Score=34.01 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=22.3
Q ss_pred EEEEeeCCCCceeeEEEecCCCceeEec
Q 011042 157 FVRIGVGSPPRSQYMVIDSGSDIVWVQC 184 (495)
Q Consensus 157 ~~~i~iGTP~q~~~l~~DTGS~~~Wv~~ 184 (495)
++ |.|| +|.+.+++|||.|++-+.-
T Consensus 16 ~v-ikI~--Gq~~eaLLDTGAD~TVi~~ 40 (116)
T 2hah_A 16 IL-IFVN--GYPIKFLLDTGADITVLNR 40 (116)
T ss_dssp EE-EEET--TEEEEEEECTTCSSCEEEG
T ss_pred EE-EEEC--CEEEEEEecCCCCcEEEcc
Confidence 45 9999 8999999999999998864
No 46
>3liy_A Protease; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.86A {Human t-lymphotropic virus 1} PDB: 2b7f_A* 3liq_A* 3lit_A* 3liv_A* 3lix_A* 3lin_A*
Probab=69.13 E-value=3.9 Score=33.47 Aligned_cols=31 Identities=19% Similarity=0.397 Sum_probs=25.3
Q ss_pred EEEEeeC---CCCceeeEEEecCCCceeEecCCC
Q 011042 157 FVRIGVG---SPPRSQYMVIDSGSDIVWVQCQPC 187 (495)
Q Consensus 157 ~~~i~iG---TP~q~~~l~~DTGS~~~Wv~~~~C 187 (495)
.+.|.|| +|+|.+..++|||-|++-+.-..+
T Consensus 12 lvtikI~~~~~~Gq~~eaLLDTGADdTVl~~~~l 45 (116)
T 3liy_A 12 VIKAQVDTQTSHPKTIEALLDTGADMTVIPIALF 45 (116)
T ss_dssp EEEEEEECSSSCCEEEEEEECTTBSSCEEEGGGS
T ss_pred eEEEEEccccCCCeEeEEEeccCCCccEEecccC
Confidence 4566666 889999999999999999976543
No 47
>3sqf_A Protease; folded monomer, retropepsin, D-type retrovirus; 1.63A {Mason-pfizer monkey virus} SCOP: b.50.1.1 PDB: 1nso_A
Probab=61.61 E-value=7 Score=32.04 Aligned_cols=28 Identities=11% Similarity=0.233 Sum_probs=24.6
Q ss_pred EEEEeeCCCCceeeEEEecCCCceeEecCC
Q 011042 157 FVRIGVGSPPRSQYMVIDSGSDIVWVQCQP 186 (495)
Q Consensus 157 ~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~ 186 (495)
.+.|.|| +|.+.+++|||-|++-+.-..
T Consensus 11 ~vti~I~--Gq~~eaLLDTGADdTVi~~~~ 38 (114)
T 3sqf_A 11 SLTLWLD--DKMFTGLINTGADVTIIKLED 38 (114)
T ss_dssp EEEEEET--TEEEEEEECTTCSSCEEEGGG
T ss_pred eEEEEEC--CEEEEEEEccCCCceEEeccc
Confidence 5789999 899999999999999997544
No 48
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A*
Probab=53.22 E-value=14 Score=29.11 Aligned_cols=15 Identities=40% Similarity=0.623 Sum_probs=13.8
Q ss_pred EEEccCCceeeecHH
Q 011042 372 VVMDTGTAVTRLPTP 386 (495)
Q Consensus 372 ~iiDSGTt~t~lp~~ 386 (495)
++||||++.+++|..
T Consensus 30 v~~DTGSs~lWv~~~ 44 (97)
T 1lya_A 30 VVFDTGSSNLWVPSI 44 (97)
T ss_dssp EEEETTCCCEEEEBT
T ss_pred EEEeCCCCceEEeEc
Confidence 999999999999864
No 49
>3slz_A GAG-Pro-POL polyprotein; beta sheet and dimer, protease, peptide inhibitor, TL-3 PEPS virus, hydrolase-hydrolase inhibitor complex; HET: 3TL; 1.40A {Dg-75 murine leukemia virus} PDB: 3nr6_A* 3sm1_A* 3sm2_A* 4exh_A*
Probab=47.95 E-value=14 Score=31.06 Aligned_cols=28 Identities=14% Similarity=0.249 Sum_probs=24.2
Q ss_pred EEEEEeeCCCCceeeEEEecCCCceeEecC
Q 011042 156 YFVRIGVGSPPRSQYMVIDSGSDIVWVQCQ 185 (495)
Q Consensus 156 Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~ 185 (495)
-++.+.|+ +|.+.+++|||.+++-+.-.
T Consensus 23 P~v~i~I~--G~~~~~LlDTGAd~tVl~~~ 50 (132)
T 3slz_A 23 PRITLKVG--GQPVTFLVDTGAQHSVLTQN 50 (132)
T ss_dssp SEEEEEET--TEEEEEEECTTCSSCEECSC
T ss_pred CEEEEEEC--CEEEEEEEeCCCCeEEEccc
Confidence 36889999 89999999999999988543
No 50
>2rsp_A RSV protease; hydrolase(aspartyl proteinase); 2.00A {Rous sarcoma virus} SCOP: b.50.1.1 PDB: 1mvp_A 1bai_A*
Probab=46.92 E-value=14 Score=30.82 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=19.2
Q ss_pred eCCCCceeeEEEecCCCceeEecCC
Q 011042 162 VGSPPRSQYMVIDSGSDIVWVQCQP 186 (495)
Q Consensus 162 iGTP~q~~~l~~DTGS~~~Wv~~~~ 186 (495)
|| +|.+.+++|||-|++-+.-..
T Consensus 27 i~--gq~~eaLLDTGAD~TVl~~~~ 49 (124)
T 2rsp_A 27 QR--SVYITALLDSGADITIISEED 49 (124)
T ss_dssp CS--EEEEEEEECTTCSSCEEETTT
T ss_pred CC--CEEEEEEecCCCCcEEEeccc
Confidence 66 778899999999999997543
No 51
>3ka2_A [L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydrolase-hydrolase inhibitor complex; HET: YCM 2NC; 1.40A {Synthetic} PDB: 3fsm_A* 3gi0_A* 2o40_A* 3hzc_A* 3hlo_A* 3iaw_A* 3nxe_A* 3nxn_A* 4epj_A 4ep2_A 4ep3_A 4eq0_A 4eqj_A 1hvc_A* 1g6l_A 2whh_A* 1lv1_A* 3dox_A 3kt5_A 3kt2_A ...
Probab=43.50 E-value=17 Score=32.94 Aligned_cols=26 Identities=23% Similarity=0.415 Sum_probs=23.6
Q ss_pred EEEEEeeCCCCceeeEEEecCCCceeEe
Q 011042 156 YFVRIGVGSPPRSQYMVIDSGSDIVWVQ 183 (495)
Q Consensus 156 Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~ 183 (495)
-.+.|.|| +|.+.+++|||.|++-+.
T Consensus 9 P~vtv~I~--Gq~~e~LLDTGAD~TVl~ 34 (203)
T 3ka2_A 9 PLVTIRIG--GQLKEALLDTGADDTVIE 34 (203)
T ss_dssp CEEEEEET--TEEEEEEECTTCSSCEEC
T ss_pred CeEEEEEC--CEEEEEEEecCCCceEEe
Confidence 36889999 999999999999999885
No 52
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2
Probab=39.53 E-value=24 Score=34.04 Aligned_cols=34 Identities=21% Similarity=0.221 Sum_probs=24.3
Q ss_pred CCeEEEEEeeeeEecCeeeccccccccccccCCCcEEEccCCceeeecHHHH
Q 011042 337 APSFYYVGLSGLGVGGMRIPISEDLFRLTQMGDDGVVMDTGTAVTRLPTPAY 388 (495)
Q Consensus 337 ~~~~y~v~l~gisvgg~~l~i~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~~ 388 (495)
....|+++ |.||.+.+. ++||||++.+++|..-.
T Consensus 12 ~~~~Y~~~---i~iG~Q~~~---------------v~~DTGSs~lWv~~~~C 45 (325)
T 1ibq_A 12 NDEEYLTP---VTVGKSTLH---------------LDFDTGSADLWVFSDEL 45 (325)
T ss_dssp TTSCEEEE---EEEBTEEEE---------------EEEETTCCCEEEECTTS
T ss_pred CCCEEEEE---EEECCEEEE---------------EEEeCCCccceEeeCCC
Confidence 45567664 678844332 99999999999987544
No 53
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A
Probab=37.79 E-value=22 Score=34.26 Aligned_cols=34 Identities=21% Similarity=0.311 Sum_probs=24.1
Q ss_pred CCeEEEEEeeeeEecCeeeccccccccccccCCCcEEEccCCceeeecHHHH
Q 011042 337 APSFYYVGLSGLGVGGMRIPISEDLFRLTQMGDDGVVMDTGTAVTRLPTPAY 388 (495)
Q Consensus 337 ~~~~y~v~l~gisvgg~~l~i~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~~ 388 (495)
....|+++ |.||.+.+. ++||||++.+++|..-.
T Consensus 13 ~~~~Y~~~---i~iG~Q~~~---------------v~~DTGSs~lWv~~~~C 46 (323)
T 1bxo_A 13 NDEEYITP---VTIGGTTLN---------------LNFDTGSADLWVFSTEL 46 (323)
T ss_dssp GGSCEEEE---EEETTEEEE---------------EEEETTCCCEEECBTTS
T ss_pred CCCEEEEE---EEECCEEEE---------------EEEeCCCcceEEecCCC
Confidence 34567654 678844332 99999999999997543
No 54
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A*
Probab=35.56 E-value=26 Score=33.82 Aligned_cols=17 Identities=24% Similarity=0.202 Sum_probs=14.9
Q ss_pred EEEccCCceeeecHHHH
Q 011042 372 VVMDTGTAVTRLPTPAY 388 (495)
Q Consensus 372 ~iiDSGTt~t~lp~~~~ 388 (495)
++||||++.+++|..-.
T Consensus 30 v~~DTGSs~lWv~~~~C 46 (323)
T 1izd_A 30 LDFDTGSADLWVFSSQT 46 (323)
T ss_dssp EEEETTCCCEEECBTTS
T ss_pred EEEcCCCcceEEecCCC
Confidence 99999999999997544
No 55
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A*
Probab=31.35 E-value=50 Score=32.23 Aligned_cols=45 Identities=20% Similarity=0.230 Sum_probs=29.4
Q ss_pred CCceEEecccCCCCCeEEEEEeeeeEecCeeeccccccccccccCCCcEEEccCCceeeecHH
Q 011042 324 VGAAWVPLVRNPRAPSFYYVGLSGLGVGGMRIPISEDLFRLTQMGDDGVVMDTGTAVTRLPTP 386 (495)
Q Consensus 324 ~~~~~tpl~~~~~~~~~y~v~l~gisvgg~~l~i~~~~~~~~~~g~~~~iiDSGTt~t~lp~~ 386 (495)
|.+...|+.. .....|+++ |.||. |+..+. ++||||++.+++|..
T Consensus 5 g~~~~~~l~~--~~~~~Y~~~---i~iGt-----P~q~~~--------v~~DTGSs~~Wv~~~ 49 (361)
T 1mpp_A 5 GSVDTPGLYD--FDLEEYAIP---VSIGT-----PGQDFY--------LLFDTGSSDTWVPHK 49 (361)
T ss_dssp CCEEEEEEEE--TTTTEEEEE---EEETT-----TTEEEE--------EEEETTCCCCEEEBT
T ss_pred CccceEEeec--CCCCEEEEE---EEECC-----CCcEEE--------EEEcCCCCCeEECCC
Confidence 4566677743 234567664 67773 222222 999999999999865
No 56
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A
Probab=30.46 E-value=52 Score=31.56 Aligned_cols=45 Identities=29% Similarity=0.383 Sum_probs=28.7
Q ss_pred CceEEecccCCCCCeEEEEEeeeeEecCeeeccccccccccccCCCcEEEccCCceeeecHHH
Q 011042 325 GAAWVPLVRNPRAPSFYYVGLSGLGVGGMRIPISEDLFRLTQMGDDGVVMDTGTAVTRLPTPA 387 (495)
Q Consensus 325 ~~~~tpl~~~~~~~~~y~v~l~gisvgg~~l~i~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~ 387 (495)
++...|+.. .....|+++ |.||. |+..+. ++||||++.+++|...
T Consensus 2 ~~~~~~l~n--~~~~~Y~~~---i~iGt-----P~q~~~--------v~~DTGSs~~Wv~~~~ 46 (323)
T 3cms_A 2 EVASVPLTN--YLDSQYFGK---IYLGT-----PPQEFT--------VLFDTGSSDFWVPSIY 46 (323)
T ss_dssp CCEEEEEEE--ETTTEEEEE---EEETT-----TTEEEE--------EEEETTCCCEEEEBTT
T ss_pred CcceeeeEe--ccCCEEEEE---EEECC-----CCeEEE--------EEEeCCccceEEcCCC
Confidence 445566642 234567664 67773 223232 9999999999998653
No 57
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ...
Probab=27.67 E-value=51 Score=31.72 Aligned_cols=16 Identities=19% Similarity=0.231 Sum_probs=14.2
Q ss_pred EEEccCCceeeecHHH
Q 011042 372 VVMDTGTAVTRLPTPA 387 (495)
Q Consensus 372 ~iiDSGTt~t~lp~~~ 387 (495)
++||||++.+++|..-
T Consensus 32 v~~DTGSs~lWv~~~~ 47 (329)
T 1oew_A 32 LDFDTGSSDLWVFSSE 47 (329)
T ss_dssp EEEETTCCCEEECBTT
T ss_pred EEECCCCCCeEEecCC
Confidence 9999999999998743
No 58
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A*
Probab=26.43 E-value=55 Score=31.45 Aligned_cols=17 Identities=18% Similarity=0.181 Sum_probs=14.9
Q ss_pred EEEccCCceeeecHHHH
Q 011042 372 VVMDTGTAVTRLPTPAY 388 (495)
Q Consensus 372 ~iiDSGTt~t~lp~~~~ 388 (495)
++||||++.+++|..-.
T Consensus 32 v~~DTGSs~lWv~~~~C 48 (329)
T 3c9x_A 32 LDFDTGSSDLWVFSSET 48 (329)
T ss_dssp EEEETTCCCEEECBTTS
T ss_pred EEEcCCCCCeEEecCCC
Confidence 99999999999997543
No 59
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A
Probab=26.03 E-value=62 Score=31.01 Aligned_cols=34 Identities=21% Similarity=0.345 Sum_probs=23.2
Q ss_pred CCeEEEEEeeeeEecCeeeccccccccccccCCCcEEEccCCceeeecHH
Q 011042 337 APSFYYVGLSGLGVGGMRIPISEDLFRLTQMGDDGVVMDTGTAVTRLPTP 386 (495)
Q Consensus 337 ~~~~y~v~l~gisvgg~~l~i~~~~~~~~~~g~~~~iiDSGTt~t~lp~~ 386 (495)
....|+++ |.||. |+..+. ++||||++.+++|..
T Consensus 13 ~~~~Y~~~---i~iGT-----P~q~~~--------v~~DTGSs~lWv~~~ 46 (325)
T 2apr_A 13 NDIEYYGQ---VTIGT-----PGKKFN--------LDFDTGSSDLWIAST 46 (325)
T ss_dssp TTTEEEEE---EEETT-----TTEEEE--------EEEETTCCCCEEEBT
T ss_pred CCCEEEEE---EEECC-----CCeEEE--------EEEcCCCCCEEEccC
Confidence 45567664 67772 222222 999999999999864
No 60
>3ka2_A [L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydrolase-hydrolase inhibitor complex; HET: YCM 2NC; 1.40A {Synthetic} PDB: 3fsm_A* 3gi0_A* 2o40_A* 3hzc_A* 3hlo_A* 3iaw_A* 3nxe_A* 3nxn_A* 4epj_A 4ep2_A 4ep3_A 4eq0_A 4eqj_A 1hvc_A* 1g6l_A 2whh_A* 1lv1_A* 3dox_A 3kt5_A 3kt2_A ...
Probab=25.73 E-value=50 Score=29.84 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=23.8
Q ss_pred EEEEEeeCCCCceeeEEEecCCCceeEec
Q 011042 156 YFVRIGVGSPPRSQYMVIDSGSDIVWVQC 184 (495)
Q Consensus 156 Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~ 184 (495)
=.+.+.|| +|.+.+++|||-|++-+..
T Consensus 113 P~~~iki~--Gq~~e~LlDTGAD~TVl~~ 139 (203)
T 3ka2_A 113 PLVTIRIG--GQLKEALLDTGADDTVIEE 139 (203)
T ss_dssp CEEEEEET--TEEEEEEECTTCSSCEECS
T ss_pred CcEEEEEC--CEEEeeeecccCCceeeec
Confidence 36889999 8999999999999998853
No 61
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max}
Probab=25.29 E-value=66 Score=31.92 Aligned_cols=42 Identities=10% Similarity=0.079 Sum_probs=27.1
Q ss_pred EEecccCCCCCeEEEEEeeeeEecCeeeccccccccccccCCCcEEEccCCceeeecHH
Q 011042 328 WVPLVRNPRAPSFYYVGLSGLGVGGMRIPISEDLFRLTQMGDDGVVMDTGTAVTRLPTP 386 (495)
Q Consensus 328 ~tpl~~~~~~~~~y~v~l~gisvgg~~l~i~~~~~~~~~~g~~~~iiDSGTt~t~lp~~ 386 (495)
..|+..+. ....|+++ |.||. |+..|. ++||||++.+|+|-.
T Consensus 11 ~~pl~~~~-~~~~Y~~~---i~iGT-----P~Q~~~--------v~~DTGSs~lWv~~~ 52 (403)
T 3aup_A 11 VLPVQNDG-STGLHWAN---LQKRT-----PLMQVP--------VLVDLNGNHLWVNCE 52 (403)
T ss_dssp EEEEEECT-TTCCEEEE---EEETT-----TTEEEE--------EEEETTCSSEEEECS
T ss_pred EEeeecCC-CCceEEEE---EECCC-----CCceeE--------EEEECCCCceeECCC
Confidence 46665332 34567664 66773 233332 999999999999854
No 62
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=23.31 E-value=67 Score=29.30 Aligned_cols=15 Identities=40% Similarity=0.807 Sum_probs=13.7
Q ss_pred EEEccCCceeeecHH
Q 011042 372 VVMDTGTAVTRLPTP 386 (495)
Q Consensus 372 ~iiDSGTt~t~lp~~ 386 (495)
++||||++.+++|..
T Consensus 30 v~~DTGSs~lWv~~~ 44 (239)
T 1b5f_A 30 VIFDTGSSVLWVPSS 44 (239)
T ss_dssp EEEETTCCCEEEEBT
T ss_pred EEEeCCCcceEEEcC
Confidence 999999999999864
No 63
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A
Probab=20.76 E-value=82 Score=31.51 Aligned_cols=44 Identities=16% Similarity=0.145 Sum_probs=29.5
Q ss_pred CceEEecccCCCCCeEEEEEeeeeEecCeeeccccccccccccCCCcEEEccCCceeeecH
Q 011042 325 GAAWVPLVRNPRAPSFYYVGLSGLGVGGMRIPISEDLFRLTQMGDDGVVMDTGTAVTRLPT 385 (495)
Q Consensus 325 ~~~~tpl~~~~~~~~~y~v~l~gisvgg~~l~i~~~~~~~~~~g~~~~iiDSGTt~t~lp~ 385 (495)
.....|+..+. ....|+++ |+||. |+..|. ++||||+.++|+|-
T Consensus 7 ~~~~~pv~~d~-~~~~Y~~~---i~iGT-----Ppq~~~--------v~~DTGS~~lWv~c 50 (413)
T 3vla_A 7 SALVVPVKKDA-STLQYVTT---INQRT-----PLVSEN--------LVVDLGGRFLWVDC 50 (413)
T ss_dssp SEEEEEEEECT-TTCCEEEE---EEETT-----TTEEEE--------EEEETTCSSEEEEC
T ss_pred ccEEEEeeecC-CCCeEEEE---EEcCC-----CCcceE--------EEEeCCChhhhccc
Confidence 34557887664 45556654 56664 333333 99999999999985
No 64
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans}
Probab=20.47 E-value=88 Score=30.12 Aligned_cols=15 Identities=33% Similarity=0.656 Sum_probs=13.4
Q ss_pred EEEccCCceeeecHH
Q 011042 372 VVMDTGTAVTRLPTP 386 (495)
Q Consensus 372 ~iiDSGTt~t~lp~~ 386 (495)
++||||++.+++|..
T Consensus 29 v~~DTGSs~~Wv~~~ 43 (342)
T 2qzx_A 29 VIVDTGSSDLWIPDS 43 (342)
T ss_dssp EEEETTCCCEEEEEE
T ss_pred EEEeCCCCCeEEecC
Confidence 999999999999843
No 65
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2
Probab=20.22 E-value=74 Score=30.62 Aligned_cols=14 Identities=36% Similarity=0.556 Sum_probs=13.2
Q ss_pred EEEccCCceeeecH
Q 011042 372 VVMDTGTAVTRLPT 385 (495)
Q Consensus 372 ~iiDSGTt~t~lp~ 385 (495)
++||||++.++++.
T Consensus 29 v~~DTGSs~lWv~~ 42 (340)
T 1wkr_A 29 LLVDTGSSNTWLGA 42 (340)
T ss_dssp EEEETTCCCCEECS
T ss_pred EEEeCCChhheecC
Confidence 99999999999985
No 66
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A*
Probab=20.12 E-value=81 Score=30.26 Aligned_cols=15 Identities=27% Similarity=0.426 Sum_probs=13.5
Q ss_pred EEEccCCceeeecHH
Q 011042 372 VVMDTGTAVTRLPTP 386 (495)
Q Consensus 372 ~iiDSGTt~t~lp~~ 386 (495)
++||||++.+++|..
T Consensus 29 v~~DTGSs~~Wv~~~ 43 (339)
T 3fv3_A 29 VIIDTGSSDFWVVDS 43 (339)
T ss_dssp EEEETTCCCEEEEEE
T ss_pred EEEeCCCCceEEecC
Confidence 999999999999853
Done!