Query 011043
Match_columns 495
No_of_seqs 544 out of 4154
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 07:28:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011043.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011043hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1764 5'-AMP-activated prote 100.0 2.7E-33 5.9E-38 282.1 26.8 303 159-494 55-359 (381)
2 cd02859 AMPKbeta_GBD_like AMP- 99.9 5.4E-25 1.2E-29 172.5 9.9 79 25-106 1-79 (79)
3 cd02861 E_set_proteins_like E 99.8 3E-18 6.6E-23 135.7 9.5 77 26-105 2-81 (82)
4 COG2524 Predicted transcriptio 99.7 1.3E-17 2.9E-22 152.8 13.1 120 355-495 173-292 (294)
5 KOG1616 Protein involved in Sn 99.7 6.9E-17 1.5E-21 157.0 9.5 90 22-111 76-165 (289)
6 COG2524 Predicted transcriptio 99.6 3.7E-15 8.1E-20 136.8 12.2 120 263-410 171-290 (294)
7 cd04641 CBS_pair_28 The CBS do 99.6 2.5E-14 5.3E-19 121.9 15.1 119 363-492 2-120 (120)
8 COG3448 CBS-domain-containing 99.6 1.3E-14 2.8E-19 135.5 14.1 172 216-411 200-372 (382)
9 COG3448 CBS-domain-containing 99.6 3.4E-15 7.3E-20 139.4 9.8 126 356-494 247-372 (382)
10 COG3620 Predicted transcriptio 99.6 6.1E-14 1.3E-18 119.6 13.0 117 358-495 69-185 (187)
11 cd04618 CBS_pair_5 The CBS dom 99.5 7E-14 1.5E-18 114.9 11.6 95 363-492 2-98 (98)
12 cd04603 CBS_pair_KefB_assoc Th 99.5 1.1E-13 2.4E-18 116.2 12.5 110 363-492 2-111 (111)
13 cd04619 CBS_pair_6 The CBS dom 99.5 2.9E-13 6.3E-18 114.2 14.4 111 364-491 3-113 (114)
14 cd04617 CBS_pair_4 The CBS dom 99.5 3.8E-13 8.2E-18 114.2 14.4 114 363-491 2-117 (118)
15 cd04618 CBS_pair_5 The CBS dom 99.5 2E-13 4.4E-18 112.1 11.3 97 180-324 1-97 (98)
16 PRK10892 D-arabinose 5-phospha 99.5 2.9E-13 6.3E-18 136.1 13.8 119 355-492 203-323 (326)
17 TIGR00400 mgtE Mg2+ transporte 99.5 3.3E-13 7.2E-18 140.9 13.9 214 216-492 86-304 (449)
18 cd04608 CBS_pair_PALP_assoc Th 99.5 3.6E-13 7.7E-18 115.7 11.6 113 363-493 3-124 (124)
19 cd04593 CBS_pair_EriC_assoc_ba 99.5 1.1E-12 2.4E-17 110.6 14.5 112 363-492 2-115 (115)
20 cd04630 CBS_pair_17 The CBS do 99.5 1.3E-12 2.8E-17 110.1 14.7 112 363-492 2-114 (114)
21 KOG1764 5'-AMP-activated prote 99.5 2.7E-12 5.9E-17 130.0 19.4 197 182-413 164-361 (381)
22 cd04600 CBS_pair_HPP_assoc Thi 99.5 1E-12 2.2E-17 112.3 13.8 117 362-492 2-124 (124)
23 COG3620 Predicted transcriptio 99.5 8.9E-13 1.9E-17 112.5 12.1 120 265-412 66-185 (187)
24 cd04614 CBS_pair_1 The CBS dom 99.5 1.3E-12 2.9E-17 106.8 12.7 95 363-492 2-96 (96)
25 cd04801 CBS_pair_M50_like This 99.4 1.2E-12 2.7E-17 110.1 12.6 111 363-491 2-113 (114)
26 cd04623 CBS_pair_10 The CBS do 99.4 3E-12 6.5E-17 107.2 14.8 112 363-492 2-113 (113)
27 cd04605 CBS_pair_MET2_assoc Th 99.4 3.1E-12 6.8E-17 106.8 14.8 108 362-491 2-109 (110)
28 cd04641 CBS_pair_28 The CBS do 99.4 2.2E-12 4.8E-17 109.7 13.3 119 272-408 1-119 (120)
29 cd04639 CBS_pair_26 The CBS do 99.4 2.6E-12 5.6E-17 107.4 13.5 109 363-491 2-110 (111)
30 PRK11543 gutQ D-arabinose 5-ph 99.4 1.2E-12 2.7E-17 131.3 13.6 119 355-492 198-318 (321)
31 cd04627 CBS_pair_14 The CBS do 99.4 2.3E-12 5E-17 110.1 13.2 119 363-490 2-121 (123)
32 cd04803 CBS_pair_15 The CBS do 99.4 3.3E-12 7.2E-17 108.7 14.1 116 363-492 2-122 (122)
33 cd04607 CBS_pair_NTP_transfera 99.4 4.1E-12 9E-17 106.7 14.5 109 364-491 4-112 (113)
34 PRK14869 putative manganese-de 99.4 9.5E-13 2.1E-17 141.4 13.2 281 170-492 68-391 (546)
35 cd04631 CBS_pair_18 The CBS do 99.4 2.8E-12 6E-17 109.7 13.5 116 363-492 2-125 (125)
36 cd04615 CBS_pair_2 The CBS dom 99.4 4.1E-12 8.8E-17 106.6 14.1 110 364-491 3-112 (113)
37 cd04642 CBS_pair_29 The CBS do 99.4 2.6E-12 5.7E-17 110.3 13.2 124 363-491 2-125 (126)
38 PRK15094 magnesium/cobalt effl 99.4 2.1E-12 4.5E-17 127.0 13.8 118 357-495 70-190 (292)
39 cd04632 CBS_pair_19 The CBS do 99.4 4.6E-12 1E-16 109.0 14.3 117 363-492 2-128 (128)
40 cd04621 CBS_pair_8 The CBS dom 99.4 4.6E-12 1E-16 110.5 14.3 115 363-492 2-135 (135)
41 cd04624 CBS_pair_11 The CBS do 99.4 6.3E-12 1.4E-16 105.3 14.5 110 363-491 2-111 (112)
42 cd04626 CBS_pair_13 The CBS do 99.4 5.8E-12 1.3E-16 105.4 14.3 109 363-491 2-110 (111)
43 COG2905 Predicted signal-trans 99.4 1.2E-12 2.7E-17 132.9 11.8 119 355-493 150-269 (610)
44 cd04596 CBS_pair_DRTGG_assoc T 99.4 3.9E-12 8.4E-17 106.0 12.9 105 363-491 3-107 (108)
45 cd04643 CBS_pair_30 The CBS do 99.4 5.6E-12 1.2E-16 106.2 13.9 114 363-492 2-116 (116)
46 cd04629 CBS_pair_16 The CBS do 99.4 4.4E-12 9.6E-17 106.5 13.0 113 363-492 2-114 (114)
47 PRK14869 putative manganese-de 99.4 7E-12 1.5E-16 134.8 17.9 195 267-492 71-302 (546)
48 cd04613 CBS_pair_SpoIVFB_EriC_ 99.4 5.9E-12 1.3E-16 105.6 13.7 112 363-491 2-113 (114)
49 cd04583 CBS_pair_ABC_OpuCA_ass 99.4 7.6E-12 1.7E-16 104.1 14.3 106 363-491 3-108 (109)
50 cd04635 CBS_pair_22 The CBS do 99.4 4.5E-12 9.7E-17 107.9 13.0 116 363-492 2-122 (122)
51 cd04595 CBS_pair_DHH_polyA_Pol 99.4 9.9E-12 2.2E-16 103.8 14.8 107 363-491 3-109 (110)
52 cd04588 CBS_pair_CAP-ED_DUF294 99.4 9.8E-12 2.1E-16 103.7 14.7 108 363-491 2-109 (110)
53 cd04586 CBS_pair_BON_assoc Thi 99.4 3.6E-12 7.8E-17 110.9 12.4 116 362-492 2-135 (135)
54 cd04589 CBS_pair_CAP-ED_DUF294 99.4 1.1E-11 2.3E-16 103.7 14.9 110 363-492 2-111 (111)
55 cd04636 CBS_pair_23 The CBS do 99.4 5.9E-12 1.3E-16 109.1 13.7 115 363-492 2-132 (132)
56 cd04590 CBS_pair_CorC_HlyC_ass 99.4 9.6E-12 2.1E-16 104.0 14.4 108 363-491 2-110 (111)
57 cd04604 CBS_pair_KpsF_GutQ_ass 99.4 9E-12 2E-16 104.5 13.9 111 363-491 3-113 (114)
58 cd04582 CBS_pair_ABC_OpuCA_ass 99.4 9.2E-12 2E-16 103.2 13.5 104 363-491 2-105 (106)
59 PRK07807 inosine 5-monophospha 99.4 5E-12 1.1E-16 131.7 14.3 113 357-493 92-204 (479)
60 cd04627 CBS_pair_14 The CBS do 99.4 8.9E-12 1.9E-16 106.5 13.4 120 273-407 2-121 (123)
61 cd04800 CBS_pair_CAP-ED_DUF294 99.4 1.4E-11 3.1E-16 102.9 14.4 109 363-491 2-110 (111)
62 cd04640 CBS_pair_27 The CBS do 99.4 5.9E-12 1.3E-16 108.2 12.3 112 363-491 2-125 (126)
63 PRK05567 inosine 5'-monophosph 99.4 1.8E-11 3.9E-16 129.0 18.4 221 205-492 41-265 (486)
64 cd04603 CBS_pair_KefB_assoc Th 99.4 8.1E-12 1.8E-16 104.8 12.7 108 274-408 3-110 (111)
65 cd04620 CBS_pair_7 The CBS dom 99.4 1.2E-11 2.6E-16 104.2 13.8 110 363-491 2-114 (115)
66 cd04625 CBS_pair_12 The CBS do 99.4 1.9E-11 4.2E-16 102.3 14.8 111 363-492 2-112 (112)
67 cd04612 CBS_pair_SpoIVFB_EriC_ 99.4 1.6E-11 3.4E-16 102.5 13.9 110 363-492 2-111 (111)
68 cd04619 CBS_pair_6 The CBS dom 99.4 1.3E-11 2.7E-16 104.1 13.3 111 274-408 3-113 (114)
69 cd04611 CBS_pair_PAS_GGDEF_DUF 99.4 1.9E-11 4E-16 102.1 14.2 109 363-491 2-110 (111)
70 cd04587 CBS_pair_CAP-ED_DUF294 99.4 1.3E-11 2.9E-16 103.4 13.2 111 363-491 2-112 (113)
71 TIGR03520 GldE gliding motilit 99.4 9.2E-12 2E-16 128.2 14.5 118 355-495 192-312 (408)
72 cd04633 CBS_pair_20 The CBS do 99.4 1.3E-11 2.8E-16 104.9 12.9 114 363-492 2-121 (121)
73 cd04602 CBS_pair_IMPDH_2 This 99.3 1.7E-11 3.6E-16 103.3 13.2 106 363-491 3-113 (114)
74 PRK01862 putative voltage-gate 99.3 8.6E-12 1.9E-16 134.7 14.1 123 355-494 448-571 (574)
75 cd04585 CBS_pair_ACT_assoc2 Th 99.3 2E-11 4.3E-16 103.6 13.4 115 363-492 2-122 (122)
76 cd04617 CBS_pair_4 The CBS dom 99.3 1.5E-11 3.3E-16 104.3 12.3 111 273-408 2-117 (118)
77 cd04622 CBS_pair_9 The CBS dom 99.3 2.9E-11 6.2E-16 101.3 13.9 111 363-492 2-113 (113)
78 cd04601 CBS_pair_IMPDH This cd 99.3 1.5E-11 3.1E-16 102.5 11.9 106 363-491 3-109 (110)
79 cd04606 CBS_pair_Mg_transporte 99.3 1.6E-11 3.5E-16 102.5 11.8 103 367-493 2-109 (109)
80 cd04600 CBS_pair_HPP_assoc Thi 99.3 2.9E-11 6.2E-16 103.2 13.1 122 272-408 2-123 (124)
81 cd04630 CBS_pair_17 The CBS do 99.3 4E-11 8.7E-16 100.9 13.5 112 273-408 2-113 (114)
82 cd04609 CBS_pair_PALP_assoc2 T 99.3 4.3E-11 9.3E-16 99.6 13.5 109 363-492 2-110 (110)
83 cd04637 CBS_pair_24 The CBS do 99.3 4E-11 8.7E-16 102.1 13.5 115 363-492 2-122 (122)
84 cd02858 Esterase_N_term Estera 99.3 1E-11 2.2E-16 98.9 9.0 74 27-103 7-82 (85)
85 cd04802 CBS_pair_3 The CBS dom 99.3 7E-11 1.5E-15 98.9 14.7 110 363-491 2-111 (112)
86 cd04584 CBS_pair_ACT_assoc Thi 99.3 5.4E-11 1.2E-15 100.9 14.1 114 363-491 2-120 (121)
87 PRK07807 inosine 5-monophospha 99.3 1.4E-10 3E-15 120.9 19.9 205 204-478 43-250 (479)
88 cd04607 CBS_pair_NTP_transfera 99.3 5.3E-11 1.1E-15 99.9 13.5 109 274-408 4-112 (113)
89 cd04605 CBS_pair_MET2_assoc Th 99.3 6.1E-11 1.3E-15 98.9 13.7 108 272-408 2-109 (110)
90 cd04599 CBS_pair_GGDEF_assoc2 99.3 5.5E-11 1.2E-15 98.2 13.1 103 363-491 2-104 (105)
91 cd04642 CBS_pair_29 The CBS do 99.3 3.4E-11 7.3E-16 103.4 12.2 126 180-325 1-126 (126)
92 cd04624 CBS_pair_11 The CBS do 99.3 6.9E-11 1.5E-15 98.9 13.7 110 273-408 2-111 (112)
93 cd02205 CBS_pair The CBS domai 99.3 9.8E-11 2.1E-15 97.1 14.4 112 363-492 2-113 (113)
94 cd04623 CBS_pair_10 The CBS do 99.3 8.4E-11 1.8E-15 98.3 13.9 111 273-408 2-112 (113)
95 cd04614 CBS_pair_1 The CBS dom 99.3 7.3E-11 1.6E-15 96.4 13.0 94 273-408 2-95 (96)
96 PLN02274 inosine-5'-monophosph 99.3 5.1E-11 1.1E-15 125.1 14.9 111 360-493 106-221 (505)
97 cd04594 CBS_pair_EriC_assoc_ar 99.3 7E-11 1.5E-15 97.8 12.9 100 365-491 4-103 (104)
98 TIGR01302 IMP_dehydrog inosine 99.3 4.4E-11 9.5E-16 124.8 14.4 112 359-493 85-200 (450)
99 PRK07107 inosine 5-monophospha 99.3 2.8E-11 6.1E-16 126.8 12.9 109 364-492 107-218 (502)
100 cd04610 CBS_pair_ParBc_assoc T 99.3 5.9E-11 1.3E-15 98.4 12.3 104 363-491 3-106 (107)
101 cd04608 CBS_pair_PALP_assoc Th 99.3 2.2E-11 4.7E-16 104.5 9.8 113 272-409 2-123 (124)
102 cd04639 CBS_pair_26 The CBS do 99.3 7.5E-11 1.6E-15 98.5 12.9 109 273-408 2-110 (111)
103 PRK11543 gutQ D-arabinose 5-ph 99.3 3.3E-11 7.2E-16 121.0 12.7 118 266-409 199-318 (321)
104 COG0517 FOG: CBS domain [Gener 99.3 1.5E-10 3.2E-15 97.5 14.5 111 360-490 5-117 (117)
105 cd04591 CBS_pair_EriC_assoc_eu 99.3 7.7E-11 1.7E-15 97.9 12.3 100 363-492 3-105 (105)
106 cd04643 CBS_pair_30 The CBS do 99.3 7E-11 1.5E-15 99.5 12.1 114 273-408 2-115 (116)
107 PRK05567 inosine 5'-monophosph 99.3 5.9E-11 1.3E-15 125.1 14.2 114 357-493 90-204 (486)
108 cd04593 CBS_pair_EriC_assoc_ba 99.3 1.3E-10 2.8E-15 97.9 13.5 111 273-408 2-114 (115)
109 cd04582 CBS_pair_ABC_OpuCA_ass 99.3 1.4E-10 3E-15 96.0 13.4 104 273-408 2-105 (106)
110 PRK10892 D-arabinose 5-phospha 99.3 5E-11 1.1E-15 119.9 12.7 118 266-409 204-323 (326)
111 cd04803 CBS_pair_15 The CBS do 99.2 1.1E-10 2.4E-15 99.2 13.0 120 273-408 2-121 (122)
112 cd04629 CBS_pair_16 The CBS do 99.2 9.1E-11 2E-15 98.4 11.8 112 273-408 2-113 (114)
113 cd04631 CBS_pair_18 The CBS do 99.2 1.1E-10 2.3E-15 99.8 12.4 119 273-408 2-124 (125)
114 TIGR01303 IMP_DH_rel_1 IMP deh 99.2 7.6E-11 1.6E-15 122.8 13.6 111 358-493 92-202 (475)
115 cd04801 CBS_pair_M50_like This 99.2 9.9E-11 2.1E-15 98.4 11.9 109 273-408 2-113 (114)
116 cd04626 CBS_pair_13 The CBS do 99.2 1.3E-10 2.8E-15 97.2 12.5 109 273-408 2-110 (111)
117 cd04588 CBS_pair_CAP-ED_DUF294 99.2 1.9E-10 4.2E-15 95.9 13.5 108 273-408 2-109 (110)
118 cd04634 CBS_pair_21 The CBS do 99.2 1.9E-10 4E-15 101.3 14.0 126 363-491 2-142 (143)
119 cd04590 CBS_pair_CorC_HlyC_ass 99.2 1.7E-10 3.7E-15 96.3 12.9 108 273-408 2-110 (111)
120 PRK15094 magnesium/cobalt effl 99.2 4.4E-10 9.5E-15 110.6 17.8 162 261-462 64-227 (292)
121 cd04615 CBS_pair_2 The CBS dom 99.2 1.9E-10 4.1E-15 96.4 13.2 111 273-408 2-112 (113)
122 cd04583 CBS_pair_ABC_OpuCA_ass 99.2 2.2E-10 4.8E-15 95.1 13.5 106 273-408 3-108 (109)
123 TIGR00393 kpsF KpsF/GutQ famil 99.2 7.6E-11 1.6E-15 115.2 12.3 112 355-485 156-268 (268)
124 TIGR01303 IMP_DH_rel_1 IMP deh 99.2 4.1E-10 8.9E-15 117.3 18.1 159 205-412 43-204 (475)
125 cd04620 CBS_pair_7 The CBS dom 99.2 2E-10 4.4E-15 96.6 13.1 110 273-408 2-114 (115)
126 cd04586 CBS_pair_BON_assoc Thi 99.2 9.5E-11 2.1E-15 101.9 11.3 128 272-408 2-134 (135)
127 cd04611 CBS_pair_PAS_GGDEF_DUF 99.2 2.4E-10 5.3E-15 95.2 13.4 109 273-408 2-110 (111)
128 COG2239 MgtE Mg/Co/Ni transpor 99.2 1.1E-10 2.4E-15 119.8 13.5 162 218-413 89-255 (451)
129 cd04596 CBS_pair_DRTGG_assoc T 99.2 1.6E-10 3.4E-15 96.2 12.2 105 273-408 3-107 (108)
130 cd04598 CBS_pair_GGDEF_assoc T 99.2 2.1E-10 4.5E-15 97.1 13.0 113 363-491 2-118 (119)
131 cd04595 CBS_pair_DHH_polyA_Pol 99.2 2.4E-10 5.3E-15 95.3 13.2 108 272-408 2-109 (110)
132 cd04604 CBS_pair_KpsF_GutQ_ass 99.2 2.4E-10 5.2E-15 95.8 12.9 111 273-408 3-113 (114)
133 cd04585 CBS_pair_ACT_assoc2 Th 99.2 2.5E-10 5.4E-15 96.7 13.2 120 273-408 2-121 (122)
134 cd04636 CBS_pair_23 The CBS do 99.2 2E-10 4.3E-15 99.4 12.8 128 273-408 2-131 (132)
135 cd04638 CBS_pair_25 The CBS do 99.2 3.4E-10 7.3E-15 93.8 13.6 104 363-491 2-105 (106)
136 PTZ00314 inosine-5'-monophosph 99.2 1.3E-10 2.9E-15 122.0 13.7 111 360-493 102-217 (495)
137 TIGR00400 mgtE Mg2+ transporte 99.2 1.1E-10 2.4E-15 122.0 13.1 116 355-494 132-252 (449)
138 cd04621 CBS_pair_8 The CBS dom 99.2 2.3E-10 5.1E-15 99.7 13.1 129 273-408 2-134 (135)
139 cd04587 CBS_pair_CAP-ED_DUF294 99.2 2.8E-10 6.1E-15 95.3 13.0 111 273-408 2-112 (113)
140 COG4109 Predicted transcriptio 99.2 8E-11 1.7E-15 113.0 10.6 115 355-493 189-305 (432)
141 COG0517 FOG: CBS domain [Gener 99.2 3.2E-10 7E-15 95.4 13.4 112 269-407 4-117 (117)
142 cd04800 CBS_pair_CAP-ED_DUF294 99.2 2.5E-10 5.4E-15 95.3 12.4 109 273-408 2-110 (111)
143 cd04633 CBS_pair_20 The CBS do 99.2 2E-10 4.4E-15 97.5 11.8 119 273-408 2-120 (121)
144 cd04613 CBS_pair_SpoIVFB_EriC_ 99.2 3E-10 6.6E-15 95.1 12.6 111 273-408 2-113 (114)
145 cd04612 CBS_pair_SpoIVFB_EriC_ 99.2 4.2E-10 9.2E-15 93.8 13.3 109 273-408 2-110 (111)
146 cd04625 CBS_pair_12 The CBS do 99.2 4.5E-10 9.8E-15 93.9 13.0 110 273-408 2-111 (112)
147 cd04637 CBS_pair_24 The CBS do 99.2 3.5E-10 7.7E-15 96.2 12.4 120 273-408 2-121 (122)
148 cd04622 CBS_pair_9 The CBS dom 99.2 4.8E-10 1E-14 93.8 13.0 110 273-408 2-112 (113)
149 cd04632 CBS_pair_19 The CBS do 99.2 4.3E-10 9.3E-15 96.7 13.0 118 273-408 2-127 (128)
150 cd04602 CBS_pair_IMPDH_2 This 99.2 5.3E-10 1.2E-14 94.0 12.9 109 273-408 3-113 (114)
151 COG2905 Predicted signal-trans 99.2 1.7E-10 3.7E-15 117.5 11.3 119 267-411 152-270 (610)
152 TIGR03520 GldE gliding motilit 99.2 9.3E-10 2E-14 113.5 17.0 160 168-380 189-348 (408)
153 cd04635 CBS_pair_22 The CBS do 99.2 3.7E-10 8E-15 96.0 11.7 118 273-408 2-121 (122)
154 cd04589 CBS_pair_CAP-ED_DUF294 99.2 6.9E-10 1.5E-14 92.7 13.1 109 273-408 2-110 (111)
155 TIGR01137 cysta_beta cystathio 99.2 4.8E-10 1E-14 118.0 15.0 118 355-493 336-453 (454)
156 cd04640 CBS_pair_27 The CBS do 99.2 4.7E-10 1E-14 96.3 12.1 116 273-408 2-125 (126)
157 cd04802 CBS_pair_3 The CBS dom 99.1 1.1E-09 2.3E-14 91.6 13.5 110 273-408 2-111 (112)
158 cd04609 CBS_pair_PALP_assoc2 T 99.1 7E-10 1.5E-14 92.2 11.9 108 273-408 2-109 (110)
159 PLN02274 inosine-5'-monophosph 99.1 8E-10 1.7E-14 116.2 14.5 115 270-411 106-222 (505)
160 PRK07107 inosine 5-monophospha 99.1 5.1E-10 1.1E-14 117.4 12.1 110 274-409 107-218 (502)
161 cd02205 CBS_pair The CBS domai 99.1 2.3E-09 4.9E-14 88.8 13.8 111 273-408 2-112 (113)
162 PRK11573 hypothetical protein; 99.1 1.6E-09 3.6E-14 111.6 15.6 122 355-495 188-312 (413)
163 cd04601 CBS_pair_IMPDH This cd 99.1 1.1E-09 2.4E-14 91.0 11.8 107 272-408 2-109 (110)
164 cd04592 CBS_pair_EriC_assoc_eu 99.1 1.1E-09 2.4E-14 95.2 12.1 110 363-476 2-118 (133)
165 cd04599 CBS_pair_GGDEF_assoc2 99.1 1.3E-09 2.8E-14 89.9 11.8 102 273-407 2-103 (105)
166 cd04610 CBS_pair_ParBc_assoc T 99.1 2.2E-09 4.8E-14 88.8 13.0 105 272-408 2-106 (107)
167 cd04606 CBS_pair_Mg_transporte 99.1 1.5E-09 3.3E-14 90.4 11.9 102 277-409 2-108 (109)
168 cd04584 CBS_pair_ACT_assoc Thi 99.1 2.1E-09 4.5E-14 91.1 12.7 117 273-408 2-120 (121)
169 PRK01862 putative voltage-gate 99.1 9.2E-10 2E-14 119.0 13.0 120 267-411 450-571 (574)
170 cd04594 CBS_pair_EriC_assoc_ar 99.1 1.7E-09 3.6E-14 89.4 11.7 100 275-408 4-103 (104)
171 TIGR00393 kpsF KpsF/GutQ famil 99.1 8.2E-10 1.8E-14 107.9 11.5 110 267-402 158-268 (268)
172 PTZ00314 inosine-5'-monophosph 99.1 2E-09 4.2E-14 113.2 14.8 115 269-410 101-217 (495)
173 cd04634 CBS_pair_21 The CBS do 99.1 2.9E-09 6.3E-14 93.7 13.2 126 273-408 2-142 (143)
174 cd04591 CBS_pair_EriC_assoc_eu 99.0 3.4E-09 7.4E-14 88.0 12.2 100 273-408 3-104 (105)
175 TIGR01302 IMP_dehydrog inosine 99.0 1.9E-09 4.1E-14 112.6 13.1 164 204-410 33-200 (450)
176 cd04598 CBS_pair_GGDEF_assoc T 99.0 4.3E-09 9.3E-14 89.0 11.4 113 273-408 2-118 (119)
177 COG4109 Predicted transcriptio 99.0 3.3E-09 7.2E-14 102.1 11.1 114 267-411 191-306 (432)
178 PRK11573 hypothetical protein; 98.9 3E-08 6.4E-13 102.4 17.2 132 168-332 185-316 (413)
179 COG1253 TlyC Hemolysins and re 98.9 2E-08 4.3E-13 104.5 14.1 115 360-495 212-329 (429)
180 cd04638 CBS_pair_25 The CBS do 98.9 2.7E-08 5.9E-13 82.2 12.1 104 273-408 2-105 (106)
181 TIGR01137 cysta_beta cystathio 98.9 1.4E-08 3E-13 107.0 12.9 116 267-410 338-453 (454)
182 PF00571 CBS: CBS domain CBS d 98.9 5E-09 1.1E-13 76.6 6.0 54 441-495 4-57 (57)
183 COG2239 MgtE Mg/Co/Ni transpor 98.9 1.5E-08 3.2E-13 104.2 11.1 115 355-493 133-252 (451)
184 cd04592 CBS_pair_EriC_assoc_eu 98.8 3.5E-08 7.5E-13 85.7 11.0 113 273-394 2-118 (133)
185 cd02688 E_set E or "early" set 98.8 2.1E-08 4.5E-13 79.1 7.8 70 27-98 5-76 (83)
186 PF00571 CBS: CBS domain CBS d 98.8 1.2E-08 2.6E-13 74.5 5.7 53 358-410 3-55 (57)
187 TIGR01186 proV glycine betaine 98.8 3E-07 6.5E-12 93.2 17.8 108 363-494 251-358 (363)
188 cd02854 Glycogen_branching_enz 98.7 4.7E-08 1E-12 79.9 8.6 67 27-95 6-86 (99)
189 COG1253 TlyC Hemolysins and re 98.6 1.3E-06 2.8E-11 91.0 16.6 131 167-332 203-333 (429)
190 COG4535 CorC Putative Mg2+ and 98.6 1.3E-07 2.9E-12 86.4 7.9 112 363-495 78-190 (293)
191 PRK10070 glycine betaine trans 98.6 7.3E-07 1.6E-11 91.5 13.7 104 367-494 290-393 (400)
192 COG4536 CorB Putative Mg2+ and 98.5 6.7E-07 1.5E-11 87.4 10.9 122 355-495 201-325 (423)
193 PF02922 CBM_48: Carbohydrate- 98.5 8.2E-08 1.8E-12 76.4 3.2 57 27-84 12-73 (85)
194 KOG0474 Cl- channel CLC-7 and 98.4 4.3E-07 9.2E-12 93.8 6.5 137 355-492 583-745 (762)
195 KOG2550 IMP dehydrogenase/GMP 98.3 4.4E-06 9.4E-11 82.4 11.6 164 203-409 60-226 (503)
196 KOG2550 IMP dehydrogenase/GMP 98.3 1.1E-06 2.3E-11 86.6 7.2 107 363-492 117-226 (503)
197 COG4536 CorB Putative Mg2+ and 98.3 9.3E-06 2E-10 79.6 13.6 131 168-331 198-328 (423)
198 TIGR01186 proV glycine betaine 98.3 1.1E-05 2.5E-10 81.7 14.2 110 273-413 251-360 (363)
199 COG4535 CorC Putative Mg2+ and 98.2 4.6E-05 1E-09 70.1 13.8 116 271-413 76-191 (293)
200 PRK10070 glycine betaine trans 98.2 2.8E-05 6.1E-10 79.9 13.5 106 277-413 290-395 (400)
201 KOG0474 Cl- channel CLC-7 and 97.9 4.8E-05 1E-09 79.0 9.0 145 265-410 583-746 (762)
202 cd02860 Pullulanase_N_term Pul 97.9 4.2E-05 9.2E-10 62.8 6.9 65 28-96 10-86 (100)
203 cd04597 CBS_pair_DRTGG_assoc2 97.8 3.2E-05 6.8E-10 65.0 5.9 53 356-408 60-112 (113)
204 cd02855 Glycogen_branching_enz 97.8 0.00018 3.8E-09 59.6 9.5 69 28-97 23-98 (106)
205 COG0296 GlgB 1,4-alpha-glucan 97.7 5.9E-05 1.3E-09 80.4 6.8 66 26-93 36-109 (628)
206 cd04597 CBS_pair_DRTGG_assoc2 97.7 8.6E-05 1.9E-09 62.3 6.2 50 441-491 63-112 (113)
207 PF00686 CBM_20: Starch bindin 97.7 0.00012 2.7E-09 59.5 6.6 56 26-81 2-68 (96)
208 smart00116 CBS Domain in cysta 97.7 0.00014 3E-09 49.8 5.8 47 446-493 2-48 (49)
209 cd02856 Glycogen_debranching_e 97.6 0.00023 5.1E-09 58.7 7.1 53 28-84 11-67 (103)
210 PLN02447 1,4-alpha-glucan-bran 97.6 0.00018 3.8E-09 78.8 8.0 64 27-93 115-192 (758)
211 smart00116 CBS Domain in cysta 97.5 0.00029 6.2E-09 48.1 6.1 47 364-410 2-48 (49)
212 cd05808 CBM20_alpha_amylase Al 97.5 0.00071 1.5E-08 54.8 9.4 53 27-81 2-63 (95)
213 PRK12568 glycogen branching en 97.5 0.00028 6.1E-09 77.0 8.3 65 27-94 139-211 (730)
214 cd05814 CBM20_Prei4 Prei4, N-t 97.5 0.00088 1.9E-08 56.9 9.5 57 26-82 3-67 (120)
215 PRK12313 glycogen branching en 97.3 0.00057 1.2E-08 75.0 8.5 67 27-95 39-112 (633)
216 KOG0475 Cl- channel CLC-3 and 97.3 0.0018 3.9E-08 67.8 11.0 124 364-493 558-694 (696)
217 PRK14706 glycogen branching en 97.3 0.00071 1.5E-08 73.7 8.5 65 27-94 39-111 (639)
218 cd05818 CBM20_water_dikinase P 97.3 0.0016 3.4E-08 52.5 8.4 53 26-81 2-61 (92)
219 cd05809 CBM20_beta_amylase Bet 97.2 0.0023 5E-08 52.3 9.0 57 25-81 2-68 (99)
220 TIGR03415 ABC_choXWV_ATP choli 97.2 0.0033 7.2E-08 64.3 11.9 84 383-495 298-381 (382)
221 PRK14705 glycogen branching en 97.2 0.00066 1.4E-08 78.1 7.4 64 27-92 639-710 (1224)
222 cd05820 CBM20_novamyl Novamyl 97.2 0.004 8.7E-08 51.3 9.8 54 26-81 3-70 (103)
223 cd02852 Isoamylase_N_term Isoa 97.2 0.0011 2.4E-08 56.2 6.7 59 28-88 9-75 (119)
224 COG4175 ProV ABC-type proline/ 97.2 0.0018 3.8E-08 62.9 8.5 168 271-495 215-384 (386)
225 cd02853 MTHase_N_term Maltooli 97.1 0.002 4.4E-08 51.0 6.7 61 28-94 10-72 (85)
226 cd05811 CBM20_glucoamylase Glu 97.0 0.009 2E-07 49.4 10.1 58 24-81 5-73 (106)
227 cd05813 CBM20_genethonin_1 Gen 96.9 0.0033 7.1E-08 51.0 7.1 53 27-81 2-62 (95)
228 PRK05402 glycogen branching en 96.8 0.0029 6.2E-08 70.5 8.1 68 27-95 132-206 (726)
229 KOG0475 Cl- channel CLC-3 and 96.8 0.018 3.8E-07 60.6 12.8 133 273-410 557-694 (696)
230 cd05807 CBM20_CGTase CGTase, C 96.7 0.01 2.2E-07 48.7 8.3 57 25-81 2-70 (101)
231 TIGR02402 trehalose_TreZ malto 96.6 0.0038 8.2E-08 67.1 6.4 61 28-95 1-64 (542)
232 cd05810 CBM20_alpha_MTH Glucan 96.5 0.011 2.3E-07 48.2 7.0 54 26-81 1-64 (97)
233 PRK05402 glycogen branching en 96.5 0.0059 1.3E-07 68.0 7.2 62 27-91 29-95 (726)
234 TIGR01515 branching_enzym alph 96.4 0.014 3E-07 63.8 9.6 66 27-94 29-102 (613)
235 cd05467 CBM20 The family 20 ca 96.4 0.013 2.8E-07 47.4 6.9 47 34-81 11-65 (96)
236 cd05816 CBM20_DPE2_repeat2 Dis 96.3 0.042 9.2E-07 44.8 9.6 45 35-81 13-64 (99)
237 cd05817 CBM20_DSP Dual-specifi 96.1 0.029 6.4E-07 45.9 7.8 46 34-81 11-62 (100)
238 cd05806 CBM20_laforin Laforin 95.5 0.18 3.9E-06 42.0 10.2 51 31-81 10-74 (112)
239 TIGR02104 pulA_typeI pullulana 95.5 0.034 7.5E-07 60.7 7.5 64 28-94 21-94 (605)
240 KOG0476 Cl- channel CLC-2 and 95.2 0.068 1.5E-06 57.5 8.0 60 267-330 591-650 (931)
241 PF03423 CBM_25: Carbohydrate 94.9 0.086 1.9E-06 41.9 6.3 60 27-86 3-75 (87)
242 cd05815 CBM20_DPE2_repeat1 Dis 94.8 0.21 4.5E-06 40.8 8.6 47 35-81 12-65 (101)
243 PLN02960 alpha-amylase 94.4 0.038 8.3E-07 61.3 4.0 56 27-82 129-198 (897)
244 COG4175 ProV ABC-type proline/ 94.0 0.11 2.4E-06 50.8 5.8 91 281-411 293-383 (386)
245 TIGR02100 glgX_debranch glycog 93.5 0.17 3.8E-06 55.9 7.1 55 27-85 15-75 (688)
246 TIGR03415 ABC_choXWV_ATP choli 93.2 0.32 7E-06 49.9 8.1 48 362-411 333-380 (382)
247 PRK03705 glycogen debranching 93.1 0.17 3.7E-06 55.6 6.2 54 28-85 21-78 (658)
248 COG1125 OpuBA ABC-type proline 93.1 0.42 9.1E-06 45.6 7.8 113 282-409 195-308 (309)
249 TIGR02102 pullulan_Gpos pullul 92.9 0.27 5.8E-06 56.8 7.6 65 28-94 329-408 (1111)
250 PLN02316 synthase/transferase 92.6 0.51 1.1E-05 54.1 9.2 58 26-83 329-398 (1036)
251 COG1125 OpuBA ABC-type proline 92.4 0.78 1.7E-05 43.8 8.6 111 364-492 189-308 (309)
252 PLN02950 4-alpha-glucanotransf 92.3 0.88 1.9E-05 51.8 10.6 58 24-81 7-74 (909)
253 PF11806 DUF3327: Domain of un 92.1 1.2 2.7E-05 37.7 8.9 83 27-110 3-115 (122)
254 PLN02316 synthase/transferase 92.0 0.42 9.1E-06 54.7 7.6 65 27-91 155-231 (1036)
255 TIGR02103 pullul_strch alpha-1 91.7 0.54 1.2E-05 53.2 8.1 67 27-95 136-216 (898)
256 PLN02950 4-alpha-glucanotransf 91.4 1.4 3E-05 50.3 10.9 69 22-92 149-233 (909)
257 PRK14510 putative bifunctional 86.2 2.4 5.1E-05 50.2 8.4 55 27-85 24-84 (1221)
258 cd02857 CD_pullulan_degrading_ 83.6 5.5 0.00012 32.9 7.4 58 24-81 16-79 (116)
259 PLN02877 alpha-amylase/limit d 83.2 3 6.4E-05 47.6 7.1 63 27-94 223-302 (970)
260 PRK10439 enterobactin/ferric e 82.8 6.1 0.00013 41.1 8.8 58 23-81 36-106 (411)
261 PLN03244 alpha-amylase; Provis 82.6 1.5 3.3E-05 48.3 4.4 54 27-82 132-201 (872)
262 KOG0470 1,4-alpha-glucan branc 82.4 1.1 2.5E-05 48.5 3.3 41 28-69 115-157 (757)
263 KOG0476 Cl- channel CLC-2 and 77.8 2.9 6.4E-05 45.5 4.5 61 352-412 586-648 (931)
264 PF02903 Alpha-amylase_N: Alph 68.1 9.5 0.00021 32.0 4.6 70 22-91 19-100 (120)
265 COG3794 PetE Plastocyanin [Ene 67.4 17 0.00038 31.0 6.0 47 27-78 63-111 (128)
266 PF01357 Pollen_allerg_1: Poll 56.6 51 0.0011 25.6 6.5 61 23-88 11-77 (82)
267 PRK11388 DNA-binding transcrip 56.5 36 0.00079 37.5 7.8 98 373-487 61-164 (638)
268 KOG1263 Multicopper oxidases [ 53.4 11 0.00025 40.5 3.1 62 47-112 84-150 (563)
269 KOG2118 Predicted membrane pro 53.4 26 0.00057 37.3 5.8 107 364-489 216-324 (498)
270 PF11896 DUF3416: Domain of un 52.0 15 0.00033 33.6 3.3 40 46-88 55-99 (187)
271 PF05198 IF3_N: Translation in 45.1 46 0.001 25.6 4.5 29 385-413 12-40 (76)
272 TIGR03009 plancto_dom_2 Planct 41.6 31 0.00068 32.1 3.7 16 80-95 67-85 (210)
273 PF13473 Cupredoxin_1: Cupredo 40.3 29 0.00062 28.2 2.9 18 61-78 73-91 (104)
274 COG1559 Aminodeoxychorismate l 37.9 4.3E+02 0.0094 26.7 11.3 144 273-466 46-191 (342)
275 PRK10785 maltodextrin glucosid 37.5 1E+02 0.0023 33.7 7.6 63 22-84 17-87 (598)
276 TIGR02375 pseudoazurin pseudoa 37.5 1.1E+02 0.0024 25.6 6.1 47 27-78 24-71 (116)
277 PF14347 DUF4399: Domain of un 36.6 64 0.0014 25.5 4.2 32 61-93 50-81 (87)
278 KOG2118 Predicted membrane pro 35.7 82 0.0018 33.6 6.1 129 165-327 199-328 (498)
279 TIGR03503 conserved hypothetic 34.7 76 0.0017 32.3 5.4 42 40-84 152-195 (374)
280 PRK11388 DNA-binding transcrip 32.0 1.1E+02 0.0024 33.8 6.7 96 288-402 66-162 (638)
281 KOG2635 Medium subunit of clat 30.3 1.4E+02 0.003 30.9 6.3 71 23-107 374-446 (512)
282 PF03370 CBM_21: Putative phos 28.7 1.3E+02 0.0028 24.9 5.0 49 36-84 33-99 (113)
283 PF07495 Y_Y_Y: Y_Y_Y domain; 28.5 42 0.00092 24.3 1.9 25 65-89 30-58 (66)
284 PRK10301 hypothetical protein; 26.7 3.5E+02 0.0076 22.8 7.4 61 23-84 45-113 (124)
285 PF04985 Phage_tube: Phage tai 24.8 2E+02 0.0043 25.6 5.9 48 38-92 99-148 (167)
286 cd02958 UAS UAS family; UAS is 24.3 89 0.0019 25.6 3.4 67 164-232 37-110 (114)
287 KOG0045 Cytosolic Ca2+-depende 24.1 72 0.0016 34.9 3.4 27 71-97 115-144 (612)
288 PF07483 W_rich_C: Tryptophan- 23.3 1.5E+02 0.0033 24.5 4.4 45 38-85 30-74 (109)
289 PF05198 IF3_N: Translation in 22.0 1.6E+02 0.0036 22.5 4.1 25 467-492 12-36 (76)
290 TIGR03102 halo_cynanin halocya 21.9 3.9E+02 0.0084 22.3 6.7 47 27-78 51-99 (115)
291 PF05738 Cna_B: Cna protein B- 21.9 2E+02 0.0043 20.9 4.6 34 60-94 25-60 (70)
292 PF11797 DUF3324: Protein of u 21.6 2.3E+02 0.0049 24.4 5.5 51 33-89 69-125 (140)
293 TIGR02657 amicyanin amicyanin. 21.4 2.2E+02 0.0048 21.8 4.9 48 27-78 20-69 (83)
294 PLN02792 oxidoreductase 21.1 80 0.0017 34.1 3.0 47 47-94 72-123 (536)
295 PLN00044 multi-copper oxidase- 20.2 75 0.0016 34.7 2.6 48 61-111 98-150 (596)
No 1
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=100.00 E-value=2.7e-33 Score=282.13 Aligned_cols=303 Identities=31% Similarity=0.558 Sum_probs=256.8
Q ss_pred HHHHHHHHhhhccccccCCCCcceEEecCCCCHHHHHHHHHHcCCcEeeeeeCCCCeEEEEeehHHHHHHHHHHhcCCCC
Q 011043 159 SRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSN 238 (495)
Q Consensus 159 ~~~~i~~~l~~~~~~d~~p~s~~vi~l~~~~~v~~A~~~l~e~~i~~~Pv~d~~~~~~vGilt~~Dii~~l~~~~~~~~~ 238 (495)
+...+..|++.++||+++|.+++++++|..+++++||.+|..++.+++|+||...++++|+++..||+.++...++.+..
T Consensus 55 ~~~~~~~~~~~~~~~~~~p~~~~l~~~d~~~~v~~a~~~l~~~~~~~~p~~~~~~~~~~g~~~~~d~i~~~~~~~~~~~~ 134 (381)
T KOG1764|consen 55 AVDTLSKFMKSHTCYDLLPTSSKLVVFDTKLSVKKAFNALVQNGVRAAPLWDSKKQQFVGMLTITDFITVLLRYYKSKSS 134 (381)
T ss_pred hhHHHHHHHhccCcccccCCcceeEEeeCCCcHHHHHHHHHhhceeeeccccCccceeEEEEEHHHHHHHHHHhhccCCc
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999888764222
Q ss_pred C-ChhhHhhhhHHHHHHHHhhhccccCCCCcccCCCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEE
Q 011043 239 L-TEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIA 317 (495)
Q Consensus 239 l-~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGil 317 (495)
. ..+.++...+..|++.... .+....++++.+.|..++.++...+.+++++++||++ .+.+ .+++++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d--~~~~---~v~~il 202 (381)
T KOG1764|consen 135 LDNIEVLEDSQLSKRREVECL-------LKETLKPPFVSISPESSLLDAVLLLIKSRIHRVPVID--PETG---EVLYIL 202 (381)
T ss_pred HHHHhhhhhhhccccchhhhh-------hccccCCCceeecCcHHHHHHHHHHHhCCccceeeec--cccc---ceeeeh
Confidence 1 2233444444445443111 1222345559999999999999999999999999994 5667 899999
Q ss_pred ehhhHHHHHHhhhccCCCCCcccccccccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcE
Q 011043 318 SLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSL 397 (495)
Q Consensus 318 s~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~l 397 (495)
|++.|++++..+.+... ...++..+++++.+|+|. .+..+..++++.+|+++|.+.+++++||||..|+.
T Consensus 203 t~~rIl~~l~~~~~~~~-~~~~l~~s~~dl~ig~~~---------~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~ 272 (381)
T KOG1764|consen 203 TQRRILKFLWLNGRLLP-LPSLLSKSLSDLGIGTWS---------NIASISEDTPVIEALKIMSERRISALPVVDENGKK 272 (381)
T ss_pred hHHHHHHHHHHhhcccc-cHHHhhCCHHHhCcchhh---------hheeecCCCcHHHHHHHHHhcCcCcceEEcCCCce
Confidence 99999999988876654 456889999999999996 58899999999999999999999999999999999
Q ss_pred EEEEeHHHHHHHHhhcccccCcccccC-HHHHHHcCCCCCCCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCC
Q 011043 398 LDIYCRSDITALAKDKAYAHINLSEMT-IHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAG 476 (495)
Q Consensus 398 vGivs~~Dl~~~~~~~~~~~l~~~~~~-v~~~l~~~~~~~~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~ 476 (495)
+|+++..|+..+.....|..++ .+ +.+.+..+. .....+++|.++++|.+++++|..+++||+||||+
T Consensus 273 v~~~s~~Dv~~l~~~~~~~~~~---~~~l~~~~~~~~-------~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~- 341 (381)
T KOG1764|consen 273 VGNYSRFDVIHLAREGTYNNLD---LSCLSEALSHRP-------IRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDE- 341 (381)
T ss_pred ecceehhhhhhhhhcCccCccc---hhHHHHHhhhcc-------cccCccEEEeecchHHHHHHHHHhcCceEEEEEcC-
Confidence 9999999999999888776664 34 666665433 12345899999999999999999999999999994
Q ss_pred CCeEEEEEehHHHHHHhh
Q 011043 477 SKRVEGIVSLSDIFKFLL 494 (495)
Q Consensus 477 ~~~lvGiIs~~DIl~~l~ 494 (495)
+|+++|+||++||+.++.
T Consensus 342 ~~~l~GvvSLsDil~~l~ 359 (381)
T KOG1764|consen 342 DGVLVGVISLSDILSYLV 359 (381)
T ss_pred CCcEEEEeeHHHHHHHHH
Confidence 799999999999999875
No 2
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=99.92 E-value=5.4e-25 Score=172.54 Aligned_cols=79 Identities=42% Similarity=0.907 Sum_probs=73.5
Q ss_pred eeeEEEEecCCCceEEEEEccCCCCCCCCCCcccCCCCeEEEEEEeCCceEEEEEEECCEEeeCCCCCeeeCCCCCeeeE
Q 011043 25 LIPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWRHDEHQPFISSEYGIVNTV 104 (495)
Q Consensus 25 ~~~~~f~~~~~~~~V~v~Gsf~~W~~~~~m~~~~~~~~~~~~~~~l~~g~~~ykf~vdg~w~~d~~~~~~~~~~g~~nn~ 104 (495)
++|++|+|+++|++|+|+|||++|++.+||.+.. ++ |++++.||||.|+|||+|||+|.+||.+|++.|++|+.||+
T Consensus 1 ~~~v~f~~~~~a~~V~v~G~F~~W~~~~pm~~~~--~~-~~~~~~L~~g~y~YkF~Vdg~w~~d~~~~~~~d~~G~~NN~ 77 (79)
T cd02859 1 MVPTTFVWPGGGKEVYVTGSFDNWKKKIPLEKSG--KG-FSATLRLPPGKYQYKFIVDGEWRHSPDLPTETDDEGNVNNV 77 (79)
T ss_pred CeEEEEEEcCCCcEEEEEEEcCCCCccccceECC--CC-cEEEEEcCCCCEEEEEEECCEEEeCCCCCccCCCCCcEeee
Confidence 4799999999999999999999999878999853 33 99999999999999999999999999999999999999999
Q ss_pred EE
Q 011043 105 LL 106 (495)
Q Consensus 105 ~~ 106 (495)
|.
T Consensus 78 i~ 79 (79)
T cd02859 78 ID 79 (79)
T ss_pred EC
Confidence 84
No 3
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.76 E-value=3e-18 Score=135.75 Aligned_cols=77 Identities=34% Similarity=0.726 Sum_probs=68.3
Q ss_pred eeEEEEecCC-CceEEEEEccCCCCCCCCCCcccCCCCeEEEEEEeCCceEEEEEEECCEEe-eCCCCC-eeeCCCCCee
Q 011043 26 IPMRFVWPYG-GRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWR-HDEHQP-FISSEYGIVN 102 (495)
Q Consensus 26 ~~~~f~~~~~-~~~V~v~Gsf~~W~~~~~m~~~~~~~~~~~~~~~l~~g~~~ykf~vdg~w~-~d~~~~-~~~~~~g~~n 102 (495)
+|++|+|..+ +++|+|+|+||+|+. .+|.+. .+|.|++++.|+||.|+|||+|||.|. .||.++ +..|+.|+.|
T Consensus 2 ~~vtf~~~ap~a~~V~v~G~fn~W~~-~~m~~~--~~G~w~~~~~l~~G~y~Ykf~vdg~~~~~DP~~~~~~~~~~g~~n 78 (82)
T cd02861 2 VPVVFAYRGPEADSVYLAGSFNNWNA-IPMERE--GDGLWVVTVELRPGRYEYKFVVDGEWVIVDPNAAAYVDDGFGGKN 78 (82)
T ss_pred ccEEEEEECCCCCEEEEEeECCCCCc-ccCEEC--CCCcEEEEEeCCCCcEEEEEEECCEEeeCCCCCCceecCCCCccc
Confidence 5899996665 599999999999984 689874 469999999999999999999999998 999998 5888899999
Q ss_pred eEE
Q 011043 103 TVL 105 (495)
Q Consensus 103 n~~ 105 (495)
|+|
T Consensus 79 ~v~ 81 (82)
T cd02861 79 AVF 81 (82)
T ss_pred eEc
Confidence 987
No 4
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.75 E-value=1.3e-17 Score=152.78 Aligned_cols=120 Identities=20% Similarity=0.380 Sum_probs=110.3
Q ss_pred ccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCC
Q 011043 355 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQD 434 (495)
Q Consensus 355 ~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~ 434 (495)
+++++|+++++++.+++++.+|.++|.+++++..||+|+ ++++|++|.+|+..+..++.+ +..|.++|
T Consensus 173 ~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~-dk~vGiit~~dI~~aia~g~~------~~kV~~~M----- 240 (294)
T COG2524 173 KVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDD-DKIVGIITLSDIAKAIANGNL------DAKVSDYM----- 240 (294)
T ss_pred hhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecC-CceEEEEEHHHHHHHHHcCCc------cccHHHHh-----
Confidence 567889999999999999999999999999999999985 499999999999998887643 57888866
Q ss_pred CCCCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 011043 435 SYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 495 (495)
Q Consensus 435 ~~~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l~~ 495 (495)
.++++++.+++.+.+|++.|..+++.||.|+|. +|+++||||++|||+.|.+
T Consensus 241 --------~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds-~gkpvGiITrTDIL~~ia~ 292 (294)
T COG2524 241 --------RKNVITINEDEDIYDAIRLMNKNNVGRLLVTDS-NGKPVGIITRTDILTRIAG 292 (294)
T ss_pred --------ccCCceEcCchhHHHHHHHHHhcCcceEEEEcc-CCcEEEEEehHHHHHHhhc
Confidence 779999999999999999999999999999995 7999999999999998865
No 5
>KOG1616 consensus Protein involved in Snf1 protein kinase complex assembly [Carbohydrate transport and metabolism]
Probab=99.69 E-value=6.9e-17 Score=156.96 Aligned_cols=90 Identities=36% Similarity=0.739 Sum_probs=83.8
Q ss_pred CCceeeEEEEecCCCceEEEEEccCCCCCCCCCCcccCCCCeEEEEEEeCCceEEEEEEECCEEeeCCCCCeeeCCCCCe
Q 011043 22 DTVLIPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWRHDEHQPFISSEYGIV 101 (495)
Q Consensus 22 ~~~~~~~~f~~~~~~~~V~v~Gsf~~W~~~~~m~~~~~~~~~~~~~~~l~~g~~~ykf~vdg~w~~d~~~~~~~~~~g~~ 101 (495)
.....|++|+|.++++.|+|+|||.+|+..+++.+..+..|.|.+++.|++|.|+|||+|||+|++|+..|+++|..|+.
T Consensus 76 ~~~~~pvvi~W~~gg~~v~v~gS~~nWk~~~~l~~~~~~~~~f~~~~dL~~g~~~~kf~vdge~~~s~~~pta~d~~Gn~ 155 (289)
T KOG1616|consen 76 REQGRPTVIRWSQGGKEVYVDGSFGNWKTKIPLVRSGKNVGGFSTILDLPPGEHEYKFIVDGEWRHDPDLPTAEDSLGNL 155 (289)
T ss_pred cccCCceEEEecCCCceEEEecccccccccccceecCCCcccceeeEecCCceEEEEEecCCceecCCCCcccccccCCc
Confidence 44578999999999999999999999999999988765556699999999999999999999999999999999999999
Q ss_pred eeEEEecCCC
Q 011043 102 NTVLLATEPN 111 (495)
Q Consensus 102 nn~~~v~~~~ 111 (495)
||++.|.+.+
T Consensus 156 ~N~i~v~~~~ 165 (289)
T KOG1616|consen 156 NNILEVQDPD 165 (289)
T ss_pred ccceEecCcc
Confidence 9999999886
No 6
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.62 E-value=3.7e-15 Score=136.84 Aligned_cols=120 Identities=19% Similarity=0.365 Sum_probs=105.5
Q ss_pred cCCCCcccCCCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCccccc
Q 011043 263 IDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKL 342 (495)
Q Consensus 263 ~~~~g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~ 342 (495)
...++++|+++++++.+++|+.+|+.++.+++++..||++ ++ +++|++|.+||.+.+.+. .+..
T Consensus 171 k~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd----~d---k~vGiit~~dI~~aia~g---------~~~~ 234 (294)
T COG2524 171 KEKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVD----DD---KIVGIITLSDIAKAIANG---------NLDA 234 (294)
T ss_pred cchhhhhccCCceEecCCccHHHHHHHHHHcCccCCceec----CC---ceEEEEEHHHHHHHHHcC---------Cccc
Confidence 4456778999999999999999999999999999999993 33 799999999999888753 1233
Q ss_pred ccccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 011043 343 PICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA 410 (495)
Q Consensus 343 ~v~~l~i~~~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~ 410 (495)
.+ .++|.++++++..++.+.+|+++|..+++.++.|+|.+|+++|++|+.|++..+
T Consensus 235 kV------------~~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~i 290 (294)
T COG2524 235 KV------------SDYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRI 290 (294)
T ss_pred cH------------HHHhccCCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHh
Confidence 34 444999999999999999999999999999999999999999999999999754
No 7
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.60 E-value=2.5e-14 Score=121.88 Aligned_cols=119 Identities=39% Similarity=0.706 Sum_probs=96.4
Q ss_pred CceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCCCCcccc
Q 011043 363 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 442 (495)
Q Consensus 363 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~m 442 (495)
++.++.+++++.+|++.|.+++.+++||+|++|+++|+++.+|++.+...+.... ...++.+.+... .+|
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~~~~~~~---~~~~~~~~~~~~-------~~~ 71 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKEGAYNN---LDLTVGEALERR-------SQD 71 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHhcCcccc---ccCCHHHHHhhc-------ccC
Confidence 5678999999999999999999999999998999999999999998654432211 112344432111 134
Q ss_pred CCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHH
Q 011043 443 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 492 (495)
Q Consensus 443 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~ 492 (495)
..++.++.+++++.++++.|.+.+.+++||+|+ +|+++|+||+.||+++
T Consensus 72 ~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-~~~~~Givt~~di~~~ 120 (120)
T cd04641 72 FEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDE-NKRVEGIISLSDILQF 120 (120)
T ss_pred CCCCeEEcCCCcHHHHHHHHHhcCccEEEEECC-CCCEEEEEEHHHhhcC
Confidence 567889999999999999999999999999994 6899999999999864
No 8
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.60 E-value=1.3e-14 Score=135.52 Aligned_cols=172 Identities=16% Similarity=0.263 Sum_probs=130.1
Q ss_pred EEEEeehHHHHHHHHHHhcCCCCCChhhHhhhhHHHH-HHHHhhhccccCCCCcccCCCceeeCCCCcHHHHHHHHHhCC
Q 011043 216 FVGVLSASDFILILRELGNHGSNLTEEELETHTISAW-KEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNE 294 (495)
Q Consensus 216 ~vGilt~~Dii~~l~~~~~~~~~l~~~~l~~~~i~~~-~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~~a~~~m~~~~ 294 (495)
=+| ++..|+-..|+.+.. --.++.++++.+.-++- ....+. ...-.|.++|+++++++.+++++.+|..+|.+|+
T Consensus 200 rvg-fs~~Dld~aL~~~~E-~lDIdrddLe~llr~~elqa~~R~--~~~LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ 275 (382)
T COG3448 200 RVG-FSSEDLDAALQRLGE-TLDIDRDDLERLLRETELQALRRR--MGELTCADIMSRDVVTVSTDTSIDHARKLLQEHR 275 (382)
T ss_pred ccC-CCHHHHHHHHHhcCc-eecCCHHHHHHHHHHHHHHHHHHH--hccccHHHhcCccceecCCcCChHHHHHHHHHcC
Confidence 345 788999999977642 22345677776533331 111111 1234677899999999999999999999999999
Q ss_pred CceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccccCcccccccCCCCCCCceeecCCCCHH
Q 011043 295 VATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLS 374 (495)
Q Consensus 295 i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~~~m~~~~~~v~~~~sl~ 374 (495)
++.+||+ ++.. +++|+++++|+++..... .-+.++.+ ..++++.+|+.++.++.++++..
T Consensus 276 ikaLPV~---d~~~---rl~GiVt~~dl~~~a~~~----------p~qrlr~~----~~~~vk~imt~~v~tv~pdtpa~ 335 (382)
T COG3448 276 IKALPVL---DEHR---RLVGIVTQRDLLKHARPS----------PFQRLRFL----RPPTVKGIMTTPVVTVRPDTPAV 335 (382)
T ss_pred ccccccc---cccc---ceeeeeeHHHHhhccCcc----------hHHHhhcc----CCCcccccccCcceeecCCCcHH
Confidence 9999999 3555 899999999998633211 11222211 12356677999999999999999
Q ss_pred HHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 011043 375 AALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK 411 (495)
Q Consensus 375 ~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~ 411 (495)
+.+-++.+.+.+++||+|++|+++||||+.|++..+.
T Consensus 336 ~lvp~lad~g~H~lpvld~~g~lvGIvsQtDliaal~ 372 (382)
T COG3448 336 ELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAALY 372 (382)
T ss_pred HHHHHhhcCCcceeeEEcCCCcEEEEeeHHHHHHHHH
Confidence 9999999999999999999999999999999997553
No 9
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.60 E-value=3.4e-15 Score=139.42 Aligned_cols=126 Identities=20% Similarity=0.367 Sum_probs=106.2
Q ss_pred cCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCC
Q 011043 356 IGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDS 435 (495)
Q Consensus 356 v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~ 435 (495)
..++|+++++++.+++++.+|.++|.+++++.+||+|++.+++|+|+++|+.+-.+-.-+.++. ++ .+
T Consensus 247 cadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~~~p~qrlr--------~~----~~ 314 (382)
T COG3448 247 CADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHARPSPFQRLR--------FL----RP 314 (382)
T ss_pred HHHhcCccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhccCcchHHHhh--------cc----CC
Confidence 3466999999999999999999999999999999999999999999999999854433222221 11 11
Q ss_pred CCCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHhh
Q 011043 436 YSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 494 (495)
Q Consensus 436 ~~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l~ 494 (495)
..-.++|+.++.++.++++..+++-++.+.+.|.+||+|+ .|+++||||.+|++.+++
T Consensus 315 ~~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~-~g~lvGIvsQtDliaal~ 372 (382)
T COG3448 315 PTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDA-AGKLVGIVSQTDLIAALY 372 (382)
T ss_pred CcccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEcC-CCcEEEEeeHHHHHHHHH
Confidence 1223478999999999999999999999999999999995 799999999999998874
No 10
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.56 E-value=6.1e-14 Score=119.56 Aligned_cols=117 Identities=21% Similarity=0.438 Sum_probs=99.2
Q ss_pred CCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCCC
Q 011043 358 EPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYS 437 (495)
Q Consensus 358 ~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~ 437 (495)
.+|..+++.+.+++++.+++++|.+++++.+||+++ ++++|-||..++.++..++. -++.+..++++|
T Consensus 69 ~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-~k~VGsItE~~iv~~~le~~---e~i~~~~vr~vM-------- 136 (187)
T COG3620 69 TIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE-DKVVGSITENDIVRALLEGM---ESIRSLRVREVM-------- 136 (187)
T ss_pred hhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC-CeeeeeecHHHHHHHHhccc---cchhhhhHHHHh--------
Confidence 349999999999999999999999999999999985 99999999999998775542 123456677755
Q ss_pred CccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 011043 438 PYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 495 (495)
Q Consensus 438 ~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l~~ 495 (495)
..++++++++.++..+-.++..++ .+.|++ +|+++||||+.||++++.|
T Consensus 137 -----~e~fP~Vs~~~~l~vI~~LL~~~~--AVlV~e--~G~~vGIITk~DI~k~~~~ 185 (187)
T COG3620 137 -----GEPFPTVSPDESLNVISQLLEEHP--AVLVVE--NGKVVGIITKADIMKLLAG 185 (187)
T ss_pred -----cCCCCcCCCCCCHHHHHHHHhhCC--eEEEEe--CCceEEEEeHHHHHHHHhc
Confidence 788999999999998888877765 477776 6999999999999998864
No 11
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.54 E-value=7e-14 Score=114.88 Aligned_cols=95 Identities=20% Similarity=0.310 Sum_probs=85.1
Q ss_pred CceeecCCCCHHHHHHHHHHCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCCCCccc
Q 011043 363 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL 441 (495)
Q Consensus 363 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~-g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~ 441 (495)
.++++.+++++.+|++.|.+++++++||+|++ |+++|++|..|+.+...
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~------------------------------ 51 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR------------------------------ 51 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee------------------------------
Confidence 36789999999999999999999999999974 89999999999976311
Q ss_pred cCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCC-CeEEEEEehHHHHHH
Q 011043 442 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGS-KRVEGIVSLSDIFKF 492 (495)
Q Consensus 442 m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~-~~lvGiIs~~DIl~~ 492 (495)
+.++.+++++.+|+++|.+++++++||+|+ + |+++|+||.+||+++
T Consensus 52 ----~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~~~~giit~~d~~~~ 98 (98)
T cd04618 52 ----LVSIHPERSLFDAALLLLKNKIHRLPVIDP-STGTGLYILTSRRILKF 98 (98)
T ss_pred ----eEEeCCCCcHHHHHHHHHHCCCCEeeEEEC-CCCCceEEeehhhhhcC
Confidence 567999999999999999999999999995 5 899999999999863
No 12
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.53 E-value=1.1e-13 Score=116.22 Aligned_cols=110 Identities=9% Similarity=0.241 Sum_probs=92.4
Q ss_pred CceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCCCCcccc
Q 011043 363 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 442 (495)
Q Consensus 363 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~m 442 (495)
++.++.+++++.+|++.|.+.+.+.++|+|++|+++|+++..|+++..... +.+.++.++ |
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~------~~~~~v~~~-------------~ 62 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLEIGPND------YETLKVCEV-------------Y 62 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHhhcccc------ccccChhhe-------------e
Confidence 356789999999999999989999999999889999999999998742211 112345554 3
Q ss_pred CCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHH
Q 011043 443 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 492 (495)
Q Consensus 443 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~ 492 (495)
..++.++.+++++.+|+++|.+++.+++||+|+ +|+++|+||.+||+++
T Consensus 63 ~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~-~~~~~Giit~~di~~~ 111 (111)
T cd04603 63 IVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDK-EGKLVGTIYERELLRF 111 (111)
T ss_pred ecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcC-CCeEEEEEEhHHhhcC
Confidence 567889999999999999999999999999994 6999999999999863
No 13
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.52 E-value=2.9e-13 Score=114.16 Aligned_cols=111 Identities=19% Similarity=0.354 Sum_probs=94.5
Q ss_pred ceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCCCCccccC
Q 011043 364 LAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRS 443 (495)
Q Consensus 364 ~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~m~ 443 (495)
+.++.+++++.++++.|.+.+...+||+|++|+++|+++.+|+.+....... .....++.+++ .
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~~~~~---~~~~~~v~~~~-------------~ 66 (114)
T cd04619 3 LAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMGRCGG---PGCTAPVENVM-------------T 66 (114)
T ss_pred eEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHHHHHhhcCC---CcccCCHHHHh-------------c
Confidence 5678999999999999999999999999999999999999999875533110 12235677755 5
Q ss_pred CcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHH
Q 011043 444 QRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 491 (495)
Q Consensus 444 ~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~ 491 (495)
.++.++.+++++.+|++.|.+++.+++||+|+ +|+++|+||++|+++
T Consensus 67 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 67 RAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDE-NARPLGVLNARDALK 113 (114)
T ss_pred CCCeeECCCCCHHHHHHHHHHcCCCeEEEECC-CCcEEEEEEhHhhcc
Confidence 67889999999999999999999999999994 689999999999975
No 14
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.51 E-value=3.8e-13 Score=114.19 Aligned_cols=114 Identities=21% Similarity=0.324 Sum_probs=94.2
Q ss_pred CceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCCCCcccc
Q 011043 363 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 442 (495)
Q Consensus 363 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~m 442 (495)
++.++.+++++.+|++.|..++..++||+|++++++|+++..|+++...... .+...++.+++..
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~~~~----~~~~~~~~~~~~~----------- 66 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASIGGA----DLQKVPVGVIMTR----------- 66 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHcCC----CccCCCHHHHhCC-----------
Confidence 5678999999999999999999999999998899999999999988654221 1223566665511
Q ss_pred CCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCC--CeEEEEEehHHHHH
Q 011043 443 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGS--KRVEGIVSLSDIFK 491 (495)
Q Consensus 443 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~--~~lvGiIs~~DIl~ 491 (495)
..++.++.+++++.+++++|.+++++++||||+++ |+++|+||.+||++
T Consensus 67 ~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 67 MPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred CCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 12688999999999999999999999999999532 69999999999975
No 15
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.50 E-value=2e-13 Score=112.13 Aligned_cols=97 Identities=47% Similarity=0.746 Sum_probs=85.8
Q ss_pred cceEEecCCCCHHHHHHHHHHcCCcEeeeeeCCCCeEEEEeehHHHHHHHHHHhcCCCCCChhhHhhhhHHHHHHHHhhh
Q 011043 180 GKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYL 259 (495)
Q Consensus 180 ~~vi~l~~~~~v~~A~~~l~e~~i~~~Pv~d~~~~~~vGilt~~Dii~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~ 259 (495)
+++++++++.|+.+|++.|.++++.++||+|++.++++|++|..|+++.+.
T Consensus 1 ~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~----------------------------- 51 (98)
T cd04618 1 SKLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR----------------------------- 51 (98)
T ss_pred CeEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee-----------------------------
Confidence 378999999999999999999999999999976689999999999865330
Q ss_pred ccccCCCCcccCCCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHH
Q 011043 260 NRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK 324 (495)
Q Consensus 260 ~~~~~~~g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~ 324 (495)
++++.+++++.+|+++|.+++++++||++ +++| +++|++|.+|+++
T Consensus 52 --------------~~~v~~~~~l~~a~~~m~~~~~~~lpVvd--~~~~---~~~giit~~d~~~ 97 (98)
T cd04618 52 --------------LVSIHPERSLFDAALLLLKNKIHRLPVID--PSTG---TGLYILTSRRILK 97 (98)
T ss_pred --------------eEEeCCCCcHHHHHHHHHHCCCCEeeEEE--CCCC---CceEEeehhhhhc
Confidence 56899999999999999999999999994 2236 8999999999975
No 16
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.49 E-value=2.9e-13 Score=136.11 Aligned_cols=119 Identities=14% Similarity=0.274 Sum_probs=102.3
Q ss_pred ccCCCCCC--CceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcC
Q 011043 355 KIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLG 432 (495)
Q Consensus 355 ~v~~~m~~--~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~ 432 (495)
+++++|.+ ++.++.+++++.+|++.|.+++...+||+|++|+++|+||.+|+.++...+ ..+.+.++.++|
T Consensus 203 ~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~~~~----~~~~~~~v~~im--- 275 (326)
T PRK10892 203 RVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVFDMG----IDLRQASIADVM--- 275 (326)
T ss_pred cHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHHhcC----CCcccCCHHHhc---
Confidence 46677887 899999999999999999998888888899899999999999998755432 123345677754
Q ss_pred CCCCCCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHH
Q 011043 433 QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 492 (495)
Q Consensus 433 ~~~~~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~ 492 (495)
.+++.++.+++++.+|++.|.+++++++||+| +++++|+||+.||+++
T Consensus 276 ----------~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~--~~~lvGiit~~dil~~ 323 (326)
T PRK10892 276 ----------TPGGIRVRPGILAVDALNLMQSRHITSVLVAD--GDHLLGVLHMHDLLRA 323 (326)
T ss_pred ----------CCCCEEECCCCCHHHHHHHHHHCCCcEEEEee--CCEEEEEEEhHHhHhc
Confidence 67899999999999999999999999999998 4899999999999975
No 17
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.48 E-value=3.3e-13 Score=140.95 Aligned_cols=214 Identities=15% Similarity=0.201 Sum_probs=156.8
Q ss_pred EEEEeehHHHHHHHHHHhcCCCCCChhhHhhhhHHHHHHHHhhhccccCCCCcccCCCceeeCCCCcHHHHHHHHHh---
Q 011043 216 FVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILH--- 292 (495)
Q Consensus 216 ~vGilt~~Dii~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~~a~~~m~~--- 292 (495)
+..-++..|+.+++..+.. ....+-+..+.-.+.......+.++++.+|++|.++++++++++|+.+|++.|.+
T Consensus 86 ~~~~l~~dd~~~ll~~l~~---~~~~~lL~~l~~~er~~i~~ll~~~e~tvg~iMt~~~~~v~~~~tv~eal~~l~~~~~ 162 (449)
T TIGR00400 86 MINEMNLDDVIDLLEEVPA---NVVQQLLASSTEEERKAINLLLSYSDDSAGRIMTIEYVELKEDYTVGKALDYIRRVAK 162 (449)
T ss_pred HHHcCChhHHHHHHHhCCH---HHHHHHHHcCCHHHHHHHHHHhCCCcchHHHhCcCceEEECCCCcHHHHHHHHHhcCC
Confidence 3344666677777754321 1112223344444555566677788999999999999999999999999999975
Q ss_pred --CCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccccCcccccccCCCCCCCceeecCC
Q 011043 293 --NEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPS 370 (495)
Q Consensus 293 --~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~~~m~~~~~~v~~~ 370 (495)
+++..++|+ ++++ +++|+++.+|++.. . ...+++++ |.+++.++.++
T Consensus 163 ~~~~~~~v~Vv---d~~~---~l~GvV~l~dLl~a------~-------~~~~v~~i------------m~~~~~~v~~~ 211 (449)
T TIGR00400 163 TKEDIYTLYVT---NESK---HLKGVLSIRDLILA------K-------PEEILSSI------------MRSSVFSIVGV 211 (449)
T ss_pred CccceeEEEEE---CCCC---eEEEEEEHHHHhcC------C-------CCCcHHHH------------hCCCCeeECCC
Confidence 456788988 3456 89999999998631 0 01234444 88888999999
Q ss_pred CCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCCCCccccCCcceEec
Q 011043 371 ASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCL 450 (495)
Q Consensus 371 ~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~m~~~~~~v~ 450 (495)
+++.+|++.|.+++...+||+|++|+++|+||.+|++....... .++++.. ...+..
T Consensus 212 ~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~~~----------~ed~~~~-------------~gv~~~ 268 (449)
T TIGR00400 212 NDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQSEA----------TEDFYMI-------------AAVKPL 268 (449)
T ss_pred CCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHhhh----------HHHHHHh-------------cCCCCC
Confidence 99999999999999999999999999999999999998765531 2454422 233445
Q ss_pred CCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHH
Q 011043 451 PSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 492 (495)
Q Consensus 451 ~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~ 492 (495)
+++++.+++..|.+++..+|+|.- +.|++| ..++..
T Consensus 269 ~~~~l~~~~~~~~~~R~~wL~v~~-----~~~~~t-~~ii~~ 304 (449)
T TIGR00400 269 DDSYFDTSILVMAKNRIIWLLVLL-----VSSTFT-ATIISN 304 (449)
T ss_pred cchhhhchHHHHHHhccchHHHHH-----HHHHHH-HHHHHH
Confidence 678889999999999998887753 556666 555443
No 18
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.48 E-value=3.6e-13 Score=115.69 Aligned_cols=113 Identities=17% Similarity=0.274 Sum_probs=94.6
Q ss_pred CceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCCCCcccc
Q 011043 363 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 442 (495)
Q Consensus 363 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~m 442 (495)
++.++.+++++.++++.|.+++++++||+|++|+++|+++.+|+++....+.. ..+.++.++|
T Consensus 3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~~~----~~~~~v~~im------------- 65 (124)
T cd04608 3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSGKV----QPSDPVSKAL------------- 65 (124)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHhcc----CCCCcHHHHh-------------
Confidence 57789999999999999999999999999988999999999999875544321 1246788866
Q ss_pred CCcceEecCCCCHHHHHHHHH---------cCCCcEEEEEeCCCCeEEEEEehHHHHHHh
Q 011043 443 SQRCQMCLPSDTLHKVMERLA---------NPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 493 (495)
Q Consensus 443 ~~~~~~v~~~~tL~~a~~~m~---------~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l 493 (495)
.+++.++.+++++.++.+.|. +.+.+++||+++ +|+++|+||..||++++
T Consensus 66 ~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~Givt~~Dl~~~~ 124 (124)
T cd04608 66 YKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEK-QEKPIGIVTKIDLLSYI 124 (124)
T ss_pred hccceecCCCCCHHHHHhhcccCCceEEEecccccccccccc-ccceEEEEehhHhhhhC
Confidence 668999999999999999653 446788889984 69999999999999875
No 19
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.48 E-value=1.1e-12 Score=110.55 Aligned_cols=112 Identities=18% Similarity=0.334 Sum_probs=93.9
Q ss_pred CceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCCCCcccc
Q 011043 363 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 442 (495)
Q Consensus 363 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~m 442 (495)
++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++.+|+.+....... ....++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~~----~~~~~~~~~~------------- 64 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALEADEA----GEPSAVDEVA------------- 64 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHhcccc----cccccHHHhc-------------
Confidence 45678899999999999999999999999988999999999999986543211 1123455543
Q ss_pred CCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCC--CeEEEEEehHHHHHH
Q 011043 443 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGS--KRVEGIVSLSDIFKF 492 (495)
Q Consensus 443 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~--~~lvGiIs~~DIl~~ 492 (495)
..++.+|.+++++.++++.|.+++.+++||+|+ + |+++|+||.+||+++
T Consensus 65 ~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~-~~~~~~~Gvit~~di~~~ 115 (115)
T cd04593 65 TPPLLTVHPDEPLAHALDRMASRGLRQLPVVDR-GNPGQVLGLLTRENVLLA 115 (115)
T ss_pred cCCceEECCCCCHHHHHHHHHHcCCceeeEEeC-CCCCeEEEEEEhHHhhcC
Confidence 567899999999999999999999999999994 5 799999999999864
No 20
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.48 E-value=1.3e-12 Score=110.10 Aligned_cols=112 Identities=20% Similarity=0.285 Sum_probs=94.2
Q ss_pred CceeecCCCCHHHHHHHHHHCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCCCCccc
Q 011043 363 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL 441 (495)
Q Consensus 363 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~-g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~ 441 (495)
++.++.+++++.++++.|.+.+.+.+||+|++ ++++|+++.+|+++.+..... ...+.++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~---~~~~~~v~~~~------------ 66 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGR---DPDRVNVYEIM------------ 66 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCC---CCCccCHHHHh------------
Confidence 46789999999999999999999999999987 899999999999885433211 11235677755
Q ss_pred cCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHH
Q 011043 442 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 492 (495)
Q Consensus 442 m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~ 492 (495)
..++.++++++++.++++.|.+.+.+.+||+| + |+++|+||..||+++
T Consensus 67 -~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd-~-~~~~Gvi~~~dl~~~ 114 (114)
T cd04630 67 -TKPLISVSPDMDIKYCARLMERTNIRRAPVVE-N-NELIGIISLTDIFLA 114 (114)
T ss_pred -cCCCeeECCCCCHHHHHHHHHHcCCCEeeEee-C-CEEEEEEEHHHhhcC
Confidence 55789999999999999999999999999999 3 899999999999863
No 21
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=99.47 E-value=2.7e-12 Score=130.02 Aligned_cols=197 Identities=15% Similarity=0.214 Sum_probs=148.4
Q ss_pred eEEecCCCCHHHHHHHHHHcCCcEeeeeeCCCCeEEEEeehHHHHHHHHHHhcCCCCCChhhHhhhhHHHHHHHHhhhcc
Q 011043 182 VVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNR 261 (495)
Q Consensus 182 vi~l~~~~~v~~A~~~l~e~~i~~~Pv~d~~~~~~vGilt~~Dii~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~~ 261 (495)
.+.+.+..++.+|...|.+++++++||.|.+.++.++++|..-++.++...... +....+-..++..+
T Consensus 164 ~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~---~~~~~~l~~s~~dl--------- 231 (381)
T KOG1764|consen 164 FVSISPESSLLDAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRL---LPLPSLLSKSLSDL--------- 231 (381)
T ss_pred ceeecCcHHHHHHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhcc---cccHHHhhCCHHHh---------
Confidence 389999999999999999999999999998888999999999999888654332 21222222333221
Q ss_pred ccCCCCcccCCCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccc
Q 011043 262 QIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILK 341 (495)
Q Consensus 262 ~~~~~g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~ 341 (495)
+.| ....+..+..++++.+|++.|.+++++.+||+ +..| +.+|.++..|+........-. .+.
T Consensus 232 ---~ig--~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV---~~~g---~~v~~~s~~Dv~~l~~~~~~~------~~~ 294 (381)
T KOG1764|consen 232 ---GIG--TWSNIASISEDTPVIEALKIMSERRISALPVV---DENG---KKVGNYSRFDVIHLAREGTYN------NLD 294 (381)
T ss_pred ---Ccc--hhhhheeecCCCcHHHHHHHHHhcCcCcceEE---cCCC---ceecceehhhhhhhhhcCccC------ccc
Confidence 111 23468899999999999999999999999999 3555 679999999997655443211 111
Q ss_pred cc-cccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhc
Q 011043 342 LP-ICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK 413 (495)
Q Consensus 342 ~~-v~~l~i~~~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~ 413 (495)
.. ++.. .. ....-...+++|.++.++.+++..|..++++++.|||++|.++|++|..|++.++...
T Consensus 295 ~~~l~~~-----~~-~~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~~~ 361 (381)
T KOG1764|consen 295 LSCLSEA-----LS-HRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLVLT 361 (381)
T ss_pred hhHHHHH-----hh-hcccccCccEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHHhC
Confidence 11 1111 10 0011233589999999999999999999999999999999999999999999876543
No 22
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.47 E-value=1e-12 Score=112.29 Aligned_cols=117 Identities=22% Similarity=0.361 Sum_probs=95.1
Q ss_pred CCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhccccc------CcccccCHHHHHHcCCCC
Q 011043 362 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAH------INLSEMTIHQALQLGQDS 435 (495)
Q Consensus 362 ~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~------l~~~~~~v~~~l~~~~~~ 435 (495)
+++.++.+++++.++++.|.+.+++++||+|++|+++|+++..|++.......... ......++.++
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~------- 74 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGDI------- 74 (124)
T ss_pred CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHHh-------
Confidence 46788999999999999999999999999998899999999999987554321100 00112234443
Q ss_pred CCCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHH
Q 011043 436 YSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 492 (495)
Q Consensus 436 ~~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~ 492 (495)
|.+++.++.+++++.++++.|.+.+.+++||+|+ +|+++|+||..|++++
T Consensus 75 ------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~-~g~~~Gvit~~di~~~ 124 (124)
T cd04600 75 ------MSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDE-DRRLVGIVTQTDLIAA 124 (124)
T ss_pred ------ccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcC-CCCEEEEEEhHHhhcC
Confidence 4668999999999999999999999999999994 7999999999999864
No 23
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.45 E-value=8.9e-13 Score=112.54 Aligned_cols=120 Identities=19% Similarity=0.393 Sum_probs=99.4
Q ss_pred CCCcccCCCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCccccccc
Q 011043 265 SHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPI 344 (495)
Q Consensus 265 ~~g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v 344 (495)
.+..+|..|++++.|++++.+|+++|.+++++.+||++ + + +++|-+|..+|.+.+.+.. ..+
T Consensus 66 ta~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~---~-~---k~VGsItE~~iv~~~le~~-----------e~i 127 (187)
T COG3620 66 TAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIE---E-D---KVVGSITENDIVRALLEGM-----------ESI 127 (187)
T ss_pred eHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceee---C-C---eeeeeecHHHHHHHHhccc-----------cch
Confidence 45678999999999999999999999999999999993 3 5 8999999999998876542 112
Q ss_pred ccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 011043 345 CAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 412 (495)
Q Consensus 345 ~~l~i~~~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~ 412 (495)
+++ ++.++|..++.+++++.++..+-+++..+ .++.|+ ++|+++|+||+.|++++...
T Consensus 128 ~~~-------~vr~vM~e~fP~Vs~~~~l~vI~~LL~~~--~AVlV~-e~G~~vGIITk~DI~k~~~~ 185 (187)
T COG3620 128 RSL-------RVREVMGEPFPTVSPDESLNVISQLLEEH--PAVLVV-ENGKVVGIITKADIMKLLAG 185 (187)
T ss_pred hhh-------hHHHHhcCCCCcCCCCCCHHHHHHHHhhC--CeEEEE-eCCceEEEEeHHHHHHHHhc
Confidence 222 34455999999999999999888888654 478888 68999999999999987643
No 24
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.45 E-value=1.3e-12 Score=106.77 Aligned_cols=95 Identities=17% Similarity=0.354 Sum_probs=85.5
Q ss_pred CceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCCCCcccc
Q 011043 363 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 442 (495)
Q Consensus 363 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~m 442 (495)
+++++.+++++.+|++.|.+.+++.+||+|++|+++|+++.+|+....
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~-------------------------------- 49 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAKS-------------------------------- 49 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcCC--------------------------------
Confidence 467889999999999999999999999999899999999999997621
Q ss_pred CCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHH
Q 011043 443 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 492 (495)
Q Consensus 443 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~ 492 (495)
.+.++.+++++.++++.|.+++.+++||+|+ +|+++|+||++||+++
T Consensus 50 --~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~-~~~~~Giit~~di~~~ 96 (96)
T cd04614 50 --EVVTATKRTTVSECAQKMKRNRIEQIPIING-NDKLIGLLRDHDLLKP 96 (96)
T ss_pred --CcEEecCCCCHHHHHHHHHHhCCCeeeEECC-CCcEEEEEEHHHhhcC
Confidence 1567899999999999999999999999994 5899999999999864
No 25
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.45 E-value=1.2e-12 Score=110.14 Aligned_cols=111 Identities=19% Similarity=0.346 Sum_probs=91.2
Q ss_pred CceeecCCCCHHHHHHHHHHCC-CCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCCCCccc
Q 011043 363 PLAMLRPSASLSAALNLLVQAQ-VSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL 441 (495)
Q Consensus 363 ~~~~v~~~~sl~~a~~~m~~~~-~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~ 441 (495)
++.++.+++++.+|++.|.+++ .+.+||+|++|+++|+++..|++....... .+.++.+++..
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~------~~~~v~~~~~~---------- 65 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPTSQW------AQTTVIQVMTP---------- 65 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHHhhc------cccchhhhhcc----------
Confidence 4678899999999999987665 889999998899999999999988654321 13456665521
Q ss_pred cCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHH
Q 011043 442 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 491 (495)
Q Consensus 442 m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~ 491 (495)
..++.++.+++++.+|++.|.+++.+++||+|+ +++++|+||..||++
T Consensus 66 -~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~-~~~~~Gvl~~~di~~ 113 (114)
T cd04801 66 -AAKLVTVLSEESLAEVLKLLEEQGLDELAVVED-SGQVIGLITEADLLR 113 (114)
T ss_pred -cccceEECCCCcHHHHHHHHHHCCCCeeEEEcC-CCcEEEEEeccceec
Confidence 123668999999999999999999999999994 689999999999875
No 26
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.45 E-value=3e-12 Score=107.19 Aligned_cols=112 Identities=23% Similarity=0.461 Sum_probs=93.9
Q ss_pred CceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCCCCcccc
Q 011043 363 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 442 (495)
Q Consensus 363 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~m 442 (495)
++..+.++.++.++++.|.+.+++.+||+|++++++|+++..|+++....... .....++.+++
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~---~~~~~~~~~~~------------- 65 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGA---SALDTPVSEIM------------- 65 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHhhcCC---CccccCHHHhc-------------
Confidence 45678999999999999999999999999988999999999999975543211 11134566654
Q ss_pred CCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHH
Q 011043 443 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 492 (495)
Q Consensus 443 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~ 492 (495)
.+++.++.+++++.++++.|.+.+.+++||++ + |+++|+||..||+++
T Consensus 66 ~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~-~-~~~~Gvit~~di~~~ 113 (113)
T cd04623 66 TRNVITVTPDDTVDEAMALMTERRFRHLPVVD-G-GKLVGIVSIGDVVKA 113 (113)
T ss_pred CCCcEEECCCCcHHHHHHHHHHcCCCEeEEEe-C-CEEEEEEEHHHhhcC
Confidence 56789999999999999999999999999999 3 899999999999864
No 27
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.44 E-value=3.1e-12 Score=106.76 Aligned_cols=108 Identities=22% Similarity=0.463 Sum_probs=93.0
Q ss_pred CCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCCCCccc
Q 011043 362 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL 441 (495)
Q Consensus 362 ~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~ 441 (495)
+++.++.+++++.++++.|.+++...+||+|++|+++|+++..++++...... .++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~--------~~~~~~~------------ 61 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVARDK--------KSVEDIM------------ 61 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHHhhCc--------cCHHHhc------------
Confidence 35678999999999999999999999999998899999999999987554321 2355543
Q ss_pred cCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHH
Q 011043 442 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 491 (495)
Q Consensus 442 m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~ 491 (495)
.+++.++.+++++.++++.|.+.+.+.+||+++ +|+++|+||+.||++
T Consensus 62 -~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~G~v~~~di~~ 109 (110)
T cd04605 62 -TRNVITATPDEPIDVAARKMERHNISALPVVDA-ENRVIGIITSEDISK 109 (110)
T ss_pred -CCCCeEECCCCcHHHHHHHHHHhCCCEEeEECC-CCcEEEEEEHHHhhh
Confidence 567889999999999999999999999999994 689999999999975
No 28
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.43 E-value=2.2e-12 Score=109.72 Aligned_cols=119 Identities=21% Similarity=0.336 Sum_probs=92.4
Q ss_pred CCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccccCcc
Q 011043 272 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 351 (495)
Q Consensus 272 ~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~ 351 (495)
++++++.+++++.+|++.|.+++.+.+||++ +++ +++|+++..|++++....... ....++.+.-
T Consensus 1 ~~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~---~~~---~~~Giv~~~dl~~~~~~~~~~------~~~~~~~~~~--- 65 (120)
T cd04641 1 KNIATARPDTPLIDVLDMLVERRVSALPIVD---ENG---KVVDVYSRFDVINLAKEGAYN------NLDLTVGEAL--- 65 (120)
T ss_pred CCcEEEcCCCCHHHHHHHHHHcCCCeeeEEC---CCC---eEEEEEeHHHHHHHHhcCccc------cccCCHHHHH---
Confidence 3678999999999999999999999999993 466 899999999999765332110 0011111100
Q ss_pred cccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011043 352 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (495)
Q Consensus 352 ~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~ 408 (495)
.....|..++.++.+++++.++++.|.+++.+.+||+|++|+++|+||++|+++
T Consensus 66 ---~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~ 119 (120)
T cd04641 66 ---ERRSQDFEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQ 119 (120)
T ss_pred ---hhcccCCCCCeEEcCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhc
Confidence 011225567889999999999999999999999999998899999999999875
No 29
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.43 E-value=2.6e-12 Score=107.43 Aligned_cols=109 Identities=21% Similarity=0.411 Sum_probs=93.2
Q ss_pred CceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCCCCcccc
Q 011043 363 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 442 (495)
Q Consensus 363 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~m 442 (495)
++.++.+++++.++++.|.+.+...+||+|++|+++|+++..++.+...... .+.++.+++
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~------~~~~v~~~~------------- 62 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALAEGG------PDAPVRGVM------------- 62 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHHHhcC------CCCcHHHHh-------------
Confidence 4567899999999999998888999999998899999999999987654331 124566654
Q ss_pred CCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHH
Q 011043 443 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 491 (495)
Q Consensus 443 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~ 491 (495)
..++.++..++++.++++.|.+++.+++||+|+ +|+++|+||..||.+
T Consensus 63 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~~G~it~~dl~~ 110 (111)
T cd04639 63 RRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDG-SGRLVGLVTLENVGE 110 (111)
T ss_pred cCCCcEECCCCcHHHHHHHHHhcCCceeeEEcC-CCCEEEEEEHHHhhc
Confidence 557889999999999999999999999999994 589999999999975
No 30
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.43 E-value=1.2e-12 Score=131.29 Aligned_cols=119 Identities=13% Similarity=0.234 Sum_probs=102.2
Q ss_pred ccCCCCCCC--ceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcC
Q 011043 355 KIGEPNRRP--LAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLG 432 (495)
Q Consensus 355 ~v~~~m~~~--~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~ 432 (495)
+++++|.++ +.++.+++++.+|++.|..++...+||+|++|+++|+|+..|+.+....+.. .+.++.+++
T Consensus 198 ~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~~~~~-----~~~~v~~im--- 269 (321)
T PRK11543 198 KVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLVGGGA-----LTTPVNEAM--- 269 (321)
T ss_pred HHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHhCCCC-----cCCcHHHhc---
Confidence 456668887 9999999999999999998888999999999999999999999875543211 124566644
Q ss_pred CCCCCCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHH
Q 011043 433 QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 492 (495)
Q Consensus 433 ~~~~~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~ 492 (495)
.+++.++.+++++.+|++.|.+++..++||||+ +|+++|+||+.||+++
T Consensus 270 ----------~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 270 ----------TRGGTTLQAQSRAIDAKEILMKRKITAAPVVDE-NGKLTGAINLQDFYQA 318 (321)
T ss_pred ----------CCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHhc
Confidence 678899999999999999999999999999994 6899999999999975
No 31
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.43 E-value=2.3e-12 Score=110.15 Aligned_cols=119 Identities=13% Similarity=0.246 Sum_probs=90.7
Q ss_pred CceeecCCCCHHHHHHHHHHCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCCCCccc
Q 011043 363 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL 441 (495)
Q Consensus 363 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~-g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~ 441 (495)
++.++.+++++.+|++.|.+++++++||+|++ |+++|+++..|+++....+... .+..+.... .......+
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~------~~~~~~~~~--~~~~~~~~ 73 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARS------FPGLDPLYP--IPLRDLTI 73 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHh------ccchhhhhh--hhhhhccc
Confidence 46788999999999999998899999999987 9999999999998865332110 010000000 00000013
Q ss_pred cCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHH
Q 011043 442 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIF 490 (495)
Q Consensus 442 m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl 490 (495)
|..++.++.+++++.+|++.|.+++.+++||+|+ +++++|+||++||-
T Consensus 74 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~~vGiit~~di~ 121 (123)
T cd04627 74 GTSDVISINGDQPLIDALHLMHNEGISSVAVVDN-QGNLIGNISVTDVR 121 (123)
T ss_pred CcCCceEeCCCCCHHHHHHHHHHcCCceEEEECC-CCcEEEEEeHHHhh
Confidence 5678899999999999999999999999999994 68999999999984
No 32
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.43 E-value=3.3e-12 Score=108.73 Aligned_cols=116 Identities=17% Similarity=0.350 Sum_probs=94.9
Q ss_pred CceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccC-----cccccCHHHHHHcCCCCCC
Q 011043 363 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHI-----NLSEMTIHQALQLGQDSYS 437 (495)
Q Consensus 363 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l-----~~~~~~v~~~l~~~~~~~~ 437 (495)
++.++.+++++.++++.|.+.+++.+||+|++|+++|+++..|+++.......... .....++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------- 73 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVM-------- 73 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhccccccccccccccccCcCHHHhh--------
Confidence 46788999999999999999999999999988999999999999876543211100 01234566654
Q ss_pred CccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHH
Q 011043 438 PYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 492 (495)
Q Consensus 438 ~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~ 492 (495)
..++.++.+++++.++++.|.+.+.+.+||+|+ +|+++|+||..||+++
T Consensus 74 -----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~dl~~~ 122 (122)
T cd04803 74 -----KTDVLTVTPDTPLREAAEIMVENKIGCLPVVDD-KGTLVGIITRSDFLRL 122 (122)
T ss_pred -----CCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcC-CCCEEEEEEHHHhhcC
Confidence 567889999999999999999999999999994 5899999999999864
No 33
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.43 E-value=4.1e-12 Score=106.72 Aligned_cols=109 Identities=18% Similarity=0.309 Sum_probs=92.9
Q ss_pred ceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCCCCccccC
Q 011043 364 LAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRS 443 (495)
Q Consensus 364 ~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~m~ 443 (495)
..++.+++++.++++.|.+.+...++|+|++|+++|+++.+|+++....... ...++.+++ .
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~~~-----~~~~v~~~~-------------~ 65 (113)
T cd04607 4 QLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALLKGLS-----LDDPVSEVM-------------N 65 (113)
T ss_pred ceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHhcCCC-----cCCCHHHhh-------------c
Confidence 5678999999999999998999999999989999999999999875543211 124567655 5
Q ss_pred CcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHH
Q 011043 444 QRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 491 (495)
Q Consensus 444 ~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~ 491 (495)
.++.++.+++++.++++.|.+.+.+++||+|+ +|+++|+||.+||+.
T Consensus 66 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~di~~ 112 (113)
T cd04607 66 RNPITAKVGSSREEILALMRERSIRHLPILDE-EGRVVGLATLDDLLS 112 (113)
T ss_pred CCCEEEcCCCCHHHHHHHHHHCCCCEEEEECC-CCCEEEEEEhHHhcc
Confidence 56889999999999999999999999999994 689999999999974
No 34
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.43 E-value=9.5e-13 Score=141.44 Aligned_cols=281 Identities=14% Similarity=0.199 Sum_probs=177.5
Q ss_pred ccccccCCCCcceEEecCCCCHHHHHHHHHHcCCcEeeeeeCCCCeEEEEeehHHHHHHHHHHhcCCCCCChhhHhh--h
Q 011043 170 HTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELET--H 247 (495)
Q Consensus 170 ~~~~d~~p~s~~vi~l~~~~~v~~A~~~l~e~~i~~~Pv~d~~~~~~vGilt~~Dii~~l~~~~~~~~~l~~~~l~~--~ 247 (495)
.++.|++- .++++++++.++.+|++.|.+++++.+||+|.+ ++++|++|..|+.+.+...... +.+.. .
T Consensus 68 ~~V~dim~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~l~Givt~~di~~~~~~~~~~------~~~~~~~~ 138 (546)
T PRK14869 68 PQVRDLEI--DKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEE-GKLLGLVSLSDLARAYMDILDP------EILSKSPT 138 (546)
T ss_pred CcHHHhcC--CCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHhhcch------hhhhhcCC
Confidence 46777763 488999999999999999999999999999954 7999999999999876543210 01111 1
Q ss_pred hHHHHHHHHhh-hcccc-C---CCC-------------cccCC-CceeeCCCCcHHHHHHHHHhCCCceeeEEecCCC--
Q 011043 248 TISAWKEGKAY-LNRQI-D---SHG-------------KAFPR-PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQ-- 306 (495)
Q Consensus 248 ~i~~~~~~~~~-~~~~~-~---~~g-------------~~~~~-~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~-- 306 (495)
++..+.+.... +-+.. + ..| +.+.. .++.+.....+ ...+++.+++.++|+....-
T Consensus 139 t~~~i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~---~~~ai~~~~~~lIlt~g~~~~~ 215 (546)
T PRK14869 139 SLENIIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDI---QLAAIEAGVRLLIITGGAPVSE 215 (546)
T ss_pred CHHHHHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHH---HHHHHHcCCCEEEECCCCCCCH
Confidence 11111110000 00000 0 000 01222 34444433333 44578889999999843210
Q ss_pred -------CCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccccCcccccccCCCCC-CCceeecCCCCHHHHHH
Q 011043 307 -------DGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNR-RPLAMLRPSASLSAALN 378 (495)
Q Consensus 307 -------~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~~~m~-~~~~~v~~~~sl~~a~~ 378 (495)
.. .+..+.|..|.......-. ...+++++ |. +++.++.+++++.++.+
T Consensus 216 ~v~~la~~~---~i~ii~t~~dt~~t~~~l~---------~~~~V~~i------------M~~~~~~~~~~~~~~~~~~~ 271 (546)
T PRK14869 216 DVLELAKEN---GVTVISTPYDTFTTARLIN---------QSIPVSYI------------MTTEDLVTFSKDDYLEDVKE 271 (546)
T ss_pred HHHHHHHhC---CCeEEEecccHHHHHHHhh---------cCCCHHHh------------ccCCCcEEECCCCcHHHHHH
Confidence 12 4778888888776543321 13344444 88 88999999999999999
Q ss_pred HHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhccc------ccCccc---ccCHHHHHHcCCCCCCCccccCCcceEe
Q 011043 379 LLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAY------AHINLS---EMTIHQALQLGQDSYSPYELRSQRCQMC 449 (495)
Q Consensus 379 ~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~------~~l~~~---~~~v~~~l~~~~~~~~~~~~m~~~~~~v 449 (495)
.|.+++.+.+||+|++|+++|++|++|++........ ...... +..+.+++. .....++++..++.+
T Consensus 272 ~m~~~~~~~~PVvd~~g~lvGiit~~dl~~~~~~~~iLVD~~e~~q~~~~~~~~~i~~iiD----HH~~~~~~~~~pi~~ 347 (546)
T PRK14869 272 VMLKSRYRSYPVVDEDGKVVGVISRYHLLSPVRKKVILVDHNEKSQAVEGIEEAEILEIID----HHRLGDIQTSNPIFF 347 (546)
T ss_pred HHHhcCCCceEEEcCCCCEEEEEEHHHhhccccCceEEEcCccccccccchhhceEEEEec----CCccCCCCCCCCcEE
Confidence 9999999999999999999999999999985543110 000000 000000110 011123455554444
Q ss_pred ---cCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHH
Q 011043 450 ---LPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 492 (495)
Q Consensus 450 ---~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~ 492 (495)
+...+..-+.+.|.+.++...|++. +..+.||+|-++.|++
T Consensus 348 ~~~~~gst~tiv~~~~~~~~i~~~~~ia--~~ll~gIlsDT~~f~~ 391 (546)
T PRK14869 348 RNEPVGSTSTIVARMYRENGIEPSPEIA--GLLLAAILSDTLLFKS 391 (546)
T ss_pred EeeeeeeHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHHHhcCccC
Confidence 4467777888999999998888876 3578899888877653
No 35
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.43 E-value=2.8e-12 Score=109.69 Aligned_cols=116 Identities=18% Similarity=0.347 Sum_probs=94.1
Q ss_pred CceeecCCCCHHHHHHHHHHCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhhccccc-------CcccccCHHHHHHcCCC
Q 011043 363 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAH-------INLSEMTIHQALQLGQD 434 (495)
Q Consensus 363 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~-g~lvGivs~~Dl~~~~~~~~~~~-------l~~~~~~v~~~l~~~~~ 434 (495)
++.++.++.++.+++++|.+.+...+||+|++ |+++|+++..|+.....+..... ......++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 76 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSIM----- 76 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHHHh-----
Confidence 46778999999999999999999999999987 99999999999997654321100 001123455543
Q ss_pred CCCCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHH
Q 011043 435 SYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 492 (495)
Q Consensus 435 ~~~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~ 492 (495)
.+++.++.+++++.++++.|.+.+.+.+||+|+ +|+++|+||..||+++
T Consensus 77 --------~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~~Gvit~~di~~~ 125 (125)
T cd04631 77 --------TRNVITITPDDSIKDAAELMLEKRVGGLPVVDD-DGKLVGIVTERDLLKA 125 (125)
T ss_pred --------cCCceEeCCCCcHHHHHHHHHHcCCceEEEEcC-CCcEEEEEEHHHhhcC
Confidence 567999999999999999999999999999994 5899999999999874
No 36
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.42 E-value=4.1e-12 Score=106.61 Aligned_cols=110 Identities=20% Similarity=0.357 Sum_probs=92.7
Q ss_pred ceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCCCCccccC
Q 011043 364 LAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRS 443 (495)
Q Consensus 364 ~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~m~ 443 (495)
+..+.+++++.++++.|.+.+.+.+||+|++++++|+++..|+.+....... +...++.+++ .
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~~~~~----~~~~~i~~~~-------------~ 65 (113)
T cd04615 3 PSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALESEE----LKDAKVREVM-------------N 65 (113)
T ss_pred CEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhhhhhh----hcCCcHHHhc-------------c
Confidence 5678999999999999999999999999988999999999999875432211 1234566654 5
Q ss_pred CcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHH
Q 011043 444 QRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 491 (495)
Q Consensus 444 ~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~ 491 (495)
.++.++..++++.++++.|...+..++||+|+ +|+++|+||..||++
T Consensus 66 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 66 SPVITIDANDSIAKARWLMSNNNISRLPVLDD-KGKVGGIVTEDDILR 112 (113)
T ss_pred CCceEECCCCcHHHHHHHHHHcCCCeeeEECC-CCeEEEEEEHHHhhc
Confidence 67889999999999999999999999999994 689999999999975
No 37
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.42 E-value=2.6e-12 Score=110.33 Aligned_cols=124 Identities=21% Similarity=0.351 Sum_probs=92.7
Q ss_pred CceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCCCCcccc
Q 011043 363 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 442 (495)
Q Consensus 363 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~m 442 (495)
.+.++.+++++.++++.|.+++++++||+|++|+++|+++..|+++......... ..+....+.....-......|
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 77 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLLSPDDLL----LYRTITFKELSEKFTDSDGVK 77 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhhcCcchhh----cccchhhhhhhhhcccccccc
Confidence 3578899999999999999999999999998899999999999988654321100 001000000000000001234
Q ss_pred CCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHH
Q 011043 443 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 491 (495)
Q Consensus 443 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~ 491 (495)
..++.++.+++++.+|++.|.+++.+++||+|+ +++++|+||..||++
T Consensus 78 ~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~-~~~~~Giit~~dil~ 125 (126)
T cd04642 78 SRPLITCTPSSTLKEVITKLVANKVHRVWVVDE-EGKPIGVITLTDIIS 125 (126)
T ss_pred cCCCeEECCCCcHHHHHHHHHHhCCcEEEEECC-CCCEEEEEEHHHHhc
Confidence 678999999999999999999999999999994 689999999999985
No 38
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.42 E-value=2.1e-12 Score=127.00 Aligned_cols=118 Identities=14% Similarity=0.403 Sum_probs=99.1
Q ss_pred CCCCCC--CceeecCCCCHHHHHHHHHHCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCC
Q 011043 357 GEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQ 433 (495)
Q Consensus 357 ~~~m~~--~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~-g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~ 433 (495)
+++|.+ ++.++..++++.++++.+.+++++++||++++ ++++|+++.+|++....... ...++.+++
T Consensus 70 ~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~~------~~~~l~~l~---- 139 (292)
T PRK15094 70 RDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDA------EAFSMDKVL---- 139 (292)
T ss_pred eEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhccC------CcCCHHHHc----
Confidence 344876 68999999999999999999999999999875 79999999999986543211 013455544
Q ss_pred CCCCCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 011043 434 DSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 495 (495)
Q Consensus 434 ~~~~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l~~ 495 (495)
+++.++++++++.++++.|.+++.+.++|+|+ .|.++|+||+.||++.++|
T Consensus 140 ----------r~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe-~G~viGiVTleDIle~ivG 190 (292)
T PRK15094 140 ----------RQAVVVPESKRVDRMLKEFRSQRYHMAIVIDE-FGGVSGLVTIEDILELIVG 190 (292)
T ss_pred ----------CCCcCcCCCCcHHHHHHHHHhcCCEEEEEEeC-CCCEEEEeEHHHHHHHHhC
Confidence 24568999999999999999999999999994 6899999999999999986
No 39
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.42 E-value=4.6e-12 Score=109.00 Aligned_cols=117 Identities=22% Similarity=0.399 Sum_probs=92.7
Q ss_pred CceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccc-cC--------cccccCHHHHHHcCC
Q 011043 363 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYA-HI--------NLSEMTIHQALQLGQ 433 (495)
Q Consensus 363 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~-~l--------~~~~~~v~~~l~~~~ 433 (495)
++.++.+++++.+|+++|.+.+.+.+||+|++|+++|++|..|+..++...... .. ...+.++.+
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 75 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYD------ 75 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHH------
Confidence 456789999999999999999999999999889999999999998754321100 00 011223444
Q ss_pred CCCCCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeC-CCCeEEEEEehHHHHHH
Q 011043 434 DSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEA-GSKRVEGIVSLSDIFKF 492 (495)
Q Consensus 434 ~~~~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~-~~~~lvGiIs~~DIl~~ 492 (495)
+|..+++++.+++++.++++.|.+.+.+.+||++. ++++++|+||..||+++
T Consensus 76 -------~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~~ 128 (128)
T cd04632 76 -------AMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLRA 128 (128)
T ss_pred -------HhcCCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhcC
Confidence 34678899999999999999999999999999852 36899999999999863
No 40
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.41 E-value=4.6e-12 Score=110.47 Aligned_cols=115 Identities=15% Similarity=0.276 Sum_probs=93.1
Q ss_pred CceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccC-------------------ccccc
Q 011043 363 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHI-------------------NLSEM 423 (495)
Q Consensus 363 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l-------------------~~~~~ 423 (495)
++.++.+++++.+|++.|.+.+.+.+||+|++|+++|+++..|+++.......... ...+.
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEVPL 81 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccccccccc
Confidence 35678999999999999999999999999989999999999999986542211100 00122
Q ss_pred CHHHHHHcCCCCCCCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHH
Q 011043 424 TIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 492 (495)
Q Consensus 424 ~v~~~l~~~~~~~~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~ 492 (495)
++.+ +|.+++.++.+++++.++++.|.+.+.+++||++ + |+++|+||..||+++
T Consensus 82 ~v~~-------------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~-~-~~~~Gvit~~di~~~ 135 (135)
T cd04621 82 VAED-------------IMTEEIITVSPNDDVVDAAKLMLEANISGLPVVD-N-DNIVGVITKTDICRE 135 (135)
T ss_pred cHHH-------------hcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEe-C-CEEEEEEEHHHHhhC
Confidence 3444 4466788999999999999999999999999999 3 899999999999863
No 41
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.41 E-value=6.3e-12 Score=105.27 Aligned_cols=110 Identities=16% Similarity=0.374 Sum_probs=93.7
Q ss_pred CceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCCCCcccc
Q 011043 363 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 442 (495)
Q Consensus 363 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~m 442 (495)
++.++.+++++.++++.|.+.+..++||+|++|+++|+++..|+++.+..... ...++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~~~~~-----~~~~v~~~~------------- 63 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAAGID-----LDTPVSEIM------------- 63 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHhccCC-----CccCHHHhc-------------
Confidence 45678999999999999999999999999988999999999999876544321 134566543
Q ss_pred CCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHH
Q 011043 443 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 491 (495)
Q Consensus 443 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~ 491 (495)
..++.++..++++.++++.|.+++...+||+++ +|+++|+||..||++
T Consensus 64 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~-~g~~~Gilt~~dl~~ 111 (112)
T cd04624 64 TRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDK-GGELVGVISIRDLVR 111 (112)
T ss_pred cCCCEEECCCCcHHHHHHHHHHcCccEEEEEcC-CCcEEEEEEHHHhcc
Confidence 567889999999999999999999999999994 699999999999985
No 42
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.41 E-value=5.8e-12 Score=105.38 Aligned_cols=109 Identities=20% Similarity=0.342 Sum_probs=92.9
Q ss_pred CceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCCCCcccc
Q 011043 363 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 442 (495)
Q Consensus 363 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~m 442 (495)
++..+.+++++.++++.|.+.+.+++||+|++|+++|+++..|++.+...... .+.++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~~~-----~~~~v~~~~------------- 63 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLDLFESF-----LEKKVFNIV------------- 63 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHHhhccc-----ccCcHHHHh-------------
Confidence 46778999999999999999999999999988999999999999875433211 134566654
Q ss_pred CCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHH
Q 011043 443 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 491 (495)
Q Consensus 443 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~ 491 (495)
.+++.++.+++++.+|++.|.+++..++||+| + |+++|+||+.||+.
T Consensus 64 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~G~it~~di~~ 110 (111)
T cd04626 64 SQDVFYVNEEDTIDEALDIMREKQIGRLPVVD-D-NKLIGVVRTKDILD 110 (111)
T ss_pred cCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeE-C-CEEEEEEEhHHhcc
Confidence 56788999999999999999999999999999 3 89999999999974
No 43
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.41 E-value=1.2e-12 Score=132.86 Aligned_cols=119 Identities=24% Similarity=0.387 Sum_probs=105.2
Q ss_pred ccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHH-hhcccccCcccccCHHHHHHcCC
Q 011043 355 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA-KDKAYAHINLSEMTIHQALQLGQ 433 (495)
Q Consensus 355 ~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~-~~~~~~~l~~~~~~v~~~l~~~~ 433 (495)
++++.+..++++|++.+++.+|.+.|.+.|++++.++++++...||||++|+.... .++. ....+|.++|
T Consensus 150 rv~~~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g~-----~~~~~V~evm---- 220 (610)
T COG2905 150 RVGEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGR-----SKTQKVSEVM---- 220 (610)
T ss_pred HHHHHhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcCC-----Ccccchhhhh----
Confidence 55667889999999999999999999999999999999999999999999999754 3332 2246777754
Q ss_pred CCCCCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHh
Q 011043 434 DSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 493 (495)
Q Consensus 434 ~~~~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l 493 (495)
+.+++++..++.+.+|+-+|.+.++++|||++ +|+++|+||.+||++.+
T Consensus 221 ---------T~p~~svd~~~~~feAml~m~r~~I~hl~V~e--~gq~~Gilt~~dIl~l~ 269 (610)
T COG2905 221 ---------TSPVISVDRGDFLFEAMLMMLRNRIKHLPVTE--DGQPLGILTLTDILRLF 269 (610)
T ss_pred ---------ccCceeecCcchHHHHHHHHHHhCCceeeeec--CCeeeEEeeHHHHHHhh
Confidence 88999999999999999999999999999998 59999999999999875
No 44
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.41 E-value=3.9e-12 Score=106.01 Aligned_cols=105 Identities=20% Similarity=0.353 Sum_probs=92.0
Q ss_pred CceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCCCCcccc
Q 011043 363 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 442 (495)
Q Consensus 363 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~m 442 (495)
++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..++.... .+.++.+++
T Consensus 3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~----------~~~~v~~~~------------- 59 (108)
T cd04596 3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGKD----------PDTTIEKVM------------- 59 (108)
T ss_pred ccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhccc----------ccccHHHHh-------------
Confidence 467889999999999999999999999999899999999999997531 124667755
Q ss_pred CCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHH
Q 011043 443 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 491 (495)
Q Consensus 443 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~ 491 (495)
..++.++.+++++.++++.|.+.+.+.+||+|+ +|+++|+||..||++
T Consensus 60 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~G~it~~di~~ 107 (108)
T cd04596 60 TKNPITVNPKTSVASVAHMMIWEGIEMLPVVDD-NKKLLGIISRQDVLK 107 (108)
T ss_pred cCCCeEECCCCCHHHHHHHHHHcCCCeeeEEcC-CCCEEEEEEHHHhhc
Confidence 557889999999999999999999999999994 789999999999986
No 45
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.41 E-value=5.6e-12 Score=106.23 Aligned_cols=114 Identities=18% Similarity=0.299 Sum_probs=91.3
Q ss_pred CceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccC-cccccCHHHHHHcCCCCCCCccc
Q 011043 363 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHI-NLSEMTIHQALQLGQDSYSPYEL 441 (495)
Q Consensus 363 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l-~~~~~~v~~~l~~~~~~~~~~~~ 441 (495)
.++++.+++++.++++.|.+.+.+.+||+|++|+++|+++.+|+++.......... .+.+.++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~~------------ 69 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKGLENLDLERLVDLKVIDVM------------ 69 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHHHh------------
Confidence 36788999999999999999999999999988999999999999876543211000 00124556544
Q ss_pred cCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHH
Q 011043 442 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 492 (495)
Q Consensus 442 m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~ 492 (495)
.+++.++.+++++.+|++.|.+.+ .+||+|+ +|+++|+||..|++++
T Consensus 70 -~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~-~~~~~Gvit~~dil~~ 116 (116)
T cd04643 70 -NTDVPVIIDDADIEEILHLLIDQP--FLPVVDD-DGIFIGIITRREILKA 116 (116)
T ss_pred -cCCCceecCCCCHHHHHHHHhcCC--ceeEEeC-CCeEEEEEEHHHhhcC
Confidence 567889999999999999998865 5999994 6999999999999864
No 46
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.40 E-value=4.4e-12 Score=106.49 Aligned_cols=113 Identities=19% Similarity=0.350 Sum_probs=93.8
Q ss_pred CceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCCCCcccc
Q 011043 363 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 442 (495)
Q Consensus 363 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~m 442 (495)
++.++.+++++.++++.|.+.+.+.+||+|++++++|+++..|+++.+....+.. ....++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~--~~~~~v~~~~------------- 66 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESSYHC--DGVATVRDIM------------- 66 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhhhhhhcc--CCCccHHHHh-------------
Confidence 4567899999999999999888899999998899999999999987553322111 1134566654
Q ss_pred CCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHH
Q 011043 443 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 492 (495)
Q Consensus 443 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~ 492 (495)
..++.++.+++++.++++.|.+++.+++||+| + |+++|+||..||+++
T Consensus 67 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~Gvit~~di~~~ 114 (114)
T cd04629 67 TTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVD-D-GKLVGQISRRDVLRA 114 (114)
T ss_pred ccCceEECCCCcHHHHHHHHHHhCCCccCEEE-C-CEEEEEEEHHHHhcC
Confidence 55788999999999999999999999999999 3 899999999999864
No 47
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.40 E-value=7e-12 Score=134.76 Aligned_cols=195 Identities=16% Similarity=0.190 Sum_probs=137.2
Q ss_pred CcccCCCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCccccccc--
Q 011043 267 GKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPI-- 344 (495)
Q Consensus 267 g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v-- 344 (495)
+++|.++++++.+++++.+|+++|.+++++.+||+ ++++ +++|++|..|+.+.+....... .......++
T Consensus 71 ~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv---d~~g---~l~Givt~~di~~~~~~~~~~~--~~~~~~~t~~~ 142 (546)
T PRK14869 71 RDLEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVV---DEEG---KLLGLVSLSDLARAYMDILDPE--ILSKSPTSLEN 142 (546)
T ss_pred HHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEE---cCCC---EEEEEEEHHHHHHHHHhhcchh--hhhhcCCCHHH
Confidence 34688899999999999999999999999999999 4567 8999999999998776532100 000001111
Q ss_pred --------------------ccccCcccc-cccCCCCCCC-ceeecCCCCHHHHHHHHHHCCCCEEEEEcCC--------
Q 011043 345 --------------------CAIPVGTWV-PKIGEPNRRP-LAMLRPSASLSAALNLLVQAQVSSIPIVDDN-------- 394 (495)
Q Consensus 345 --------------------~~l~i~~~~-~~v~~~m~~~-~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~-------- 394 (495)
..+.++... ..+.+.+.+. ++.+.... ++...+.+.++++++|+...
T Consensus 143 i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~---d~~~~ai~~~~~~lIlt~g~~~~~~v~~ 219 (546)
T PRK14869 143 IIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDRE---DIQLAAIEAGVRLLIITGGAPVSEDVLE 219 (546)
T ss_pred HHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcH---HHHHHHHHcCCCEEEECCCCCCCHHHHH
Confidence 111111110 0111223332 44443322 33445678899999888632
Q ss_pred ----CcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCCCCccccC-CcceEecCCCCHHHHHHHHHcCCCcE
Q 011043 395 ----DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRS-QRCQMCLPSDTLHKVMERLANPGVRR 469 (495)
Q Consensus 395 ----g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~m~-~~~~~v~~~~tL~~a~~~m~~~~~~~ 469 (495)
..+.+++|..|....++.-. ...++.++| + +++.++++++++.++.+.|.+++.++
T Consensus 220 la~~~~i~ii~t~~dt~~t~~~l~------~~~~V~~iM-------------~~~~~~~~~~~~~~~~~~~~m~~~~~~~ 280 (546)
T PRK14869 220 LAKENGVTVISTPYDTFTTARLIN------QSIPVSYIM-------------TTEDLVTFSKDDYLEDVKEVMLKSRYRS 280 (546)
T ss_pred HHHhCCCeEEEecccHHHHHHHhh------cCCCHHHhc-------------cCCCcEEECCCCcHHHHHHHHHhcCCCc
Confidence 35888999999887654421 136777755 6 68999999999999999999999999
Q ss_pred EEEEeCCCCeEEEEEehHHHHHH
Q 011043 470 LVIVEAGSKRVEGIVSLSDIFKF 492 (495)
Q Consensus 470 l~VVd~~~~~lvGiIs~~DIl~~ 492 (495)
+||||+ +|+++|+||..|+++.
T Consensus 281 ~PVvd~-~g~lvGiit~~dl~~~ 302 (546)
T PRK14869 281 YPVVDE-DGKVVGVISRYHLLSP 302 (546)
T ss_pred eEEEcC-CCCEEEEEEHHHhhcc
Confidence 999994 7999999999999874
No 48
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.40 E-value=5.9e-12 Score=105.57 Aligned_cols=112 Identities=19% Similarity=0.399 Sum_probs=94.2
Q ss_pred CceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCCCCcccc
Q 011043 363 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 442 (495)
Q Consensus 363 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~m 442 (495)
++.++.+++++.++++.|.+.+++.+||+|++|+++|+++..|+.+....... ....++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~----~~~~~v~~~~------------- 64 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREILFDPSL----YDLVVASDIM------------- 64 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHHHhcccc----cccEEHHHhc-------------
Confidence 46778999999999999999999999999988999999999999876543211 1124666654
Q ss_pred CCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHH
Q 011043 443 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 491 (495)
Q Consensus 443 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~ 491 (495)
.+++.++.+++++.++++.|...+.+.+||+|.+.++++|+||..||++
T Consensus 65 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 65 TKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred cCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 5678999999999999999999999999999831589999999999985
No 49
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.40 E-value=7.6e-12 Score=104.06 Aligned_cols=106 Identities=18% Similarity=0.367 Sum_probs=91.5
Q ss_pred CceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCCCCcccc
Q 011043 363 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 442 (495)
Q Consensus 363 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~m 442 (495)
++..+.++.++.++++.|.+.+..++||+|++|+++|+++..|+....... .++.+++
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~---------~~v~~~~------------- 60 (109)
T cd04583 3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAYKEA---------KSLEDIM------------- 60 (109)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHHhhcC---------CcHhHhh-------------
Confidence 467789999999999999999999999999889999999999998754221 3455544
Q ss_pred CCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHH
Q 011043 443 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 491 (495)
Q Consensus 443 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~ 491 (495)
...+.++.+++++.++++.|.+.+.+++||+++ +|+++|+||..|+++
T Consensus 61 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~-~g~~~Gvit~~~l~~ 108 (109)
T cd04583 61 LEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDE-DGKLVGLITRSSLVD 108 (109)
T ss_pred cCCceEECCCCcHHHHHHHHHHcCCceeeEECC-CCeEEEEEehHHhhc
Confidence 557889999999999999999999999999994 689999999999975
No 50
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.40 E-value=4.5e-12 Score=107.92 Aligned_cols=116 Identities=20% Similarity=0.342 Sum_probs=92.8
Q ss_pred CceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhccc-ccC----cccccCHHHHHHcCCCCCC
Q 011043 363 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAY-AHI----NLSEMTIHQALQLGQDSYS 437 (495)
Q Consensus 363 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~-~~l----~~~~~~v~~~l~~~~~~~~ 437 (495)
++.++.+++++.++++.|.+.+.+++||+|++|+++|+++..|+++....... ... .....++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 72 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKI--------- 72 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHH---------
Confidence 46788999999999999998999999999988999999999999864211100 000 0112344544
Q ss_pred CccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHH
Q 011043 438 PYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 492 (495)
Q Consensus 438 ~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~ 492 (495)
|.+++.++..++++.++++.|.+.+.+.+||+|+ +|+++|+||+.||+++
T Consensus 73 ----~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~g~~~Gvit~~dl~~~ 122 (122)
T cd04635 73 ----MSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNE-KDQLVGIVDRHDVLKA 122 (122)
T ss_pred ----hcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcC-CCcEEEEEEhHHhhcC
Confidence 3567899999999999999999999999999994 6999999999999864
No 51
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.40 E-value=9.9e-12 Score=103.78 Aligned_cols=107 Identities=24% Similarity=0.475 Sum_probs=92.5
Q ss_pred CceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCCCCcccc
Q 011043 363 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 442 (495)
Q Consensus 363 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~m 442 (495)
++.++..+.++.++.+.|.+.+..++||+|+ |+++|+++..|+.+..... +...++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~dl~~~~~~~------~~~~~~~~~~------------- 62 (110)
T cd04595 3 PVKTVRPEATIEEARELLLRYGHTALPVVEG-GRVVGIISRRDVEKALRHG------LGHAPVKDYM------------- 62 (110)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCeeeEeeC-CEEEEEEEHHHHHHHHhcc------cccCcHHHHh-------------
Confidence 5678899999999999999889999999997 9999999999998755322 1235677755
Q ss_pred CCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHH
Q 011043 443 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 491 (495)
Q Consensus 443 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~ 491 (495)
.+++.++.+++++.+++++|.+.+.+++||++ +|+++|+||..||++
T Consensus 63 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~~~~~Gvvt~~di~~ 109 (110)
T cd04595 63 STDVVTVPPDTPLSEVQELMVEHDIGRVPVVE--DGRLVGIVTRTDLLR 109 (110)
T ss_pred cCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe--CCEEEEEEEhHHhhc
Confidence 55788999999999999999999999999999 489999999999975
No 52
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.40 E-value=9.8e-12 Score=103.73 Aligned_cols=108 Identities=24% Similarity=0.393 Sum_probs=92.7
Q ss_pred CceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCCCCcccc
Q 011043 363 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 442 (495)
Q Consensus 363 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~m 442 (495)
++.++.+++++.++++.|.+.+++++||+++ ++++|+++..|+++....+.. ..++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~~l~~~~~~~~~------~~~v~~~~------------- 61 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVDD-GKLVGIVTLSDIAHAIARGLE------LAKVKDVM------------- 61 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhcccc------ccCHHHHh-------------
Confidence 4677899999999999999999999999997 999999999999986544311 14566654
Q ss_pred CCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHH
Q 011043 443 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 491 (495)
Q Consensus 443 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~ 491 (495)
..++.++.+++++.++++.|...+.+.+||+++ +|+++|+||..||++
T Consensus 62 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~i~~~dl~~ 109 (110)
T cd04588 62 TKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDD-EGRPVGIITRTDILR 109 (110)
T ss_pred cCCceEECCCCCHHHHHHHHHhcCCCEEEEECC-CCCEEEEEEhHHhhc
Confidence 457899999999999999999999999999984 689999999999975
No 53
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.40 E-value=3.6e-12 Score=110.86 Aligned_cols=116 Identities=21% Similarity=0.359 Sum_probs=93.4
Q ss_pred CCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccc------cC------------ccccc
Q 011043 362 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYA------HI------------NLSEM 423 (495)
Q Consensus 362 ~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~------~l------------~~~~~ 423 (495)
+++.++.+++++.++++.|.+.+..++||+|++++++|+++..|+.+........ .+ .....
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (135)
T cd04586 2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHGR 81 (135)
T ss_pred CCCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcCC
Confidence 3577899999999999999999999999999889999999999998754322100 00 00112
Q ss_pred CHHHHHHcCCCCCCCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHH
Q 011043 424 TIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 492 (495)
Q Consensus 424 ~v~~~l~~~~~~~~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~ 492 (495)
++.+ +|..++.++.+++++.++++.|.+.+.+++||+| +|+++|+||+.||+++
T Consensus 82 ~v~~-------------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd--~g~~~Gvit~~di~~~ 135 (135)
T cd04586 82 KVAD-------------VMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR--GGRLVGIVSRADLLRA 135 (135)
T ss_pred CHHH-------------HhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec--CCEEEEEEEhHhhhcC
Confidence 3444 3466789999999999999999999999999999 4899999999999864
No 54
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.40 E-value=1.1e-11 Score=103.73 Aligned_cols=110 Identities=20% Similarity=0.301 Sum_probs=92.6
Q ss_pred CceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCCCCcccc
Q 011043 363 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 442 (495)
Q Consensus 363 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~m 442 (495)
+++.+.+++++.++++.|.+.+...++|+|+ |+++|+++..|+......... ..+.++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~~----~~~~~i~~~~------------- 63 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDG-DPRLGIVTRTDLLDAVLLDGL----PSSTPVGEIA------------- 63 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecC-CeEEEEEEHHHHHHHHHcCCC----CCCCCHHHHh-------------
Confidence 3567899999999999999889999999997 899999999999876543211 1235667655
Q ss_pred CCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHH
Q 011043 443 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 492 (495)
Q Consensus 443 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~ 492 (495)
.+++.++.+++++.++++.|.+++.+.+||+| +++++|+||..|+++|
T Consensus 64 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~--~~~~~G~it~~dl~~~ 111 (111)
T cd04589 64 TFPLITVDPDDFLFNALLLMTRHRIHRVVVRE--GGEVVGVLEQTDLLSF 111 (111)
T ss_pred CCCcEEECCCCcHHHHHHHHHHhCccEEEEee--CCEEEEEEEhHHhhcC
Confidence 55788999999999999999999999999999 3899999999999874
No 55
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.40 E-value=5.9e-12 Score=109.05 Aligned_cols=115 Identities=17% Similarity=0.338 Sum_probs=92.8
Q ss_pred CceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCc----------------ccccCHH
Q 011043 363 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHIN----------------LSEMTIH 426 (495)
Q Consensus 363 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~----------------~~~~~v~ 426 (495)
++.++.+++++.++++.|.+.+++++||+|++++++|+++..|+.+........... +...++.
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKKVE 81 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHcCCCHH
Confidence 467889999999999999988999999999889999999999998865432110000 0001333
Q ss_pred HHHHcCCCCCCCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHH
Q 011043 427 QALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 492 (495)
Q Consensus 427 ~~l~~~~~~~~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~ 492 (495)
+ +|.+++..+.+++++.++++.|.+.+.+++||+| + |+++|+||..|++++
T Consensus 82 ~-------------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~iGvit~~dl~~~ 132 (132)
T cd04636 82 E-------------IMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVD-D-GKLVGIISRGDIIRS 132 (132)
T ss_pred H-------------hccCCceEECCCCcHHHHHHHHHHCCCCeeEEEE-C-CEEEEEEEHHHhhcC
Confidence 3 4466789999999999999999999999999999 4 999999999999874
No 56
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.39 E-value=9.6e-12 Score=103.96 Aligned_cols=108 Identities=18% Similarity=0.352 Sum_probs=91.6
Q ss_pred CceeecCCCCHHHHHHHHHHCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCCCCccc
Q 011043 363 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL 441 (495)
Q Consensus 363 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~-g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~ 441 (495)
++.++.+++++.++++.|.+.+.+.+||++++ |+++|+++..|+++....... ..++..++
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~~------~~~~~~~~------------ 63 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEE------DLDLRDLL------------ 63 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCCC------cCCHHHHh------------
Confidence 46788999999999999999899999999987 999999999999987643311 13344432
Q ss_pred cCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHH
Q 011043 442 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 491 (495)
Q Consensus 442 m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~ 491 (495)
+++.++..++++.++++.|..++.+++||+|+ +|+++|+||+.|+++
T Consensus 64 --~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~di~~ 110 (111)
T cd04590 64 --RPPLFVPESTPLDDLLEEMRKERSHMAIVVDE-YGGTAGLVTLEDILE 110 (111)
T ss_pred --cCCeecCCCCcHHHHHHHHHhcCCcEEEEEEC-CCCEEEEeEHHHhhc
Confidence 35788999999999999999999999999994 699999999999975
No 57
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.39 E-value=9e-12 Score=104.52 Aligned_cols=111 Identities=16% Similarity=0.364 Sum_probs=94.0
Q ss_pred CceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCCCCcccc
Q 011043 363 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 442 (495)
Q Consensus 363 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~m 442 (495)
++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..++.++..... .....++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~~~~~~~~----~~~~~~v~~~~------------- 65 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALEKGL----DILTLPVADVM------------- 65 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHHHHHhccC----ccccCCHHHhh-------------
Confidence 4567899999999999998888899999998899999999999998765431 11224567655
Q ss_pred CCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHH
Q 011043 443 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 491 (495)
Q Consensus 443 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~ 491 (495)
..++.++.+++++.++++.|...+...+||+++ +++++|+||..||++
T Consensus 66 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~iG~it~~di~~ 113 (114)
T cd04604 66 TRNPKTIDPDALAAEALELMEENKITALPVVDD-NGRPVGVLHIHDLLR 113 (114)
T ss_pred ccCCeEECCCCcHHHHHHHHHHcCCCEEEEECC-CCCEEEEEEHHHhhc
Confidence 556788999999999999999999999999995 699999999999986
No 58
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.38 E-value=9.2e-12 Score=103.16 Aligned_cols=104 Identities=20% Similarity=0.231 Sum_probs=89.3
Q ss_pred CceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCCCCcccc
Q 011043 363 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 442 (495)
Q Consensus 363 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~m 442 (495)
++.++.++.++.+|++.|.+.+...+||+|++|+++|+++..|+++... .++.+++
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~~~-----------~~~~~~~------------- 57 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARASG-----------GCCGDHA------------- 57 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHhcc-----------cchhhhc-------------
Confidence 4668899999999999999899999999998899999999999986421 1244433
Q ss_pred CCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHH
Q 011043 443 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 491 (495)
Q Consensus 443 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~ 491 (495)
.+.+.++.+++++.++++.|.+.+...+||+|+ +++++|+||..|+++
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 58 EPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDE-DGRYVGEVTQRSIAD 105 (106)
T ss_pred ccCCEEECCCCCHHHHHHHHHHCCCCeeeEECC-CCcEEEEEEHHHhhc
Confidence 556788999999999999999999999999994 689999999999985
No 59
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.38 E-value=5e-12 Score=131.70 Aligned_cols=113 Identities=14% Similarity=0.224 Sum_probs=99.3
Q ss_pred CCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCC
Q 011043 357 GEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSY 436 (495)
Q Consensus 357 ~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~ 436 (495)
.++|.++++++.+++++.++++.|.+++++++||+|++++++|+||.+|+.... ...++.+++
T Consensus 92 ~~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~~~----------~~~~V~diM------- 154 (479)
T PRK07807 92 RDLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAGVD----------RFTQVRDVM------- 154 (479)
T ss_pred ccccccCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhcCc----------cCCCHHHhc-------
Confidence 345888999999999999999999999999999999999999999999985320 124567654
Q ss_pred CCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHh
Q 011043 437 SPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 493 (495)
Q Consensus 437 ~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l 493 (495)
+.++.++++++++.+|++.|.+++++.+||||+ +++++|+||.+||++..
T Consensus 155 ------t~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~-~g~lvGIIT~~DIl~~~ 204 (479)
T PRK07807 155 ------STDLVTLPAGTDPREAFDLLEAARVKLAPVVDA-DGRLVGVLTRTGALRAT 204 (479)
T ss_pred ------cCCceEECCCCcHHHHHHHHHhcCCCEEEEEcC-CCeEEEEEEHHHHHHHh
Confidence 678999999999999999999999999999995 68999999999999864
No 60
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.38 E-value=8.9e-12 Score=106.48 Aligned_cols=120 Identities=16% Similarity=0.262 Sum_probs=91.7
Q ss_pred CceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccccCccc
Q 011043 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 352 (495)
Q Consensus 273 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 352 (495)
++.++.+++++.+|++.|.+++++++||++ .+++ +++|+++..|+++++.................+.
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d--~~~~---~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~------- 69 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTE--EESG---EVIGILSQRRLVEFLWENARSFPGLDPLYPIPLR------- 69 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEe--CCCC---cEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhh-------
Confidence 567899999999999999999999999994 2236 7999999999998765432110000000000011
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHH
Q 011043 353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT 407 (495)
Q Consensus 353 ~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~ 407 (495)
..++|..++.++.+++++.+|++.|.+++.+++||+|++++++|+||.+|+.
T Consensus 70 ---~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~ 121 (123)
T cd04627 70 ---DLTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVR 121 (123)
T ss_pred ---hcccCcCCceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhh
Confidence 1123667889999999999999999999999999999889999999999985
No 61
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.38 E-value=1.4e-11 Score=102.93 Aligned_cols=109 Identities=20% Similarity=0.389 Sum_probs=91.7
Q ss_pred CceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCCCCcccc
Q 011043 363 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 442 (495)
Q Consensus 363 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~m 442 (495)
++.++..+.++.++.+.|.+.+.+.+||+|+ ++++|+++..|+......... ....++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~----~~~~~i~~~~------------- 63 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD-GRLVGIVTDRDLRNRVVAEGL----DPDTPVSEVM------------- 63 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHhccCC----CccCCHHHHh-------------
Confidence 4677899999999999999888999999987 999999999999874432211 1124566654
Q ss_pred CCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHH
Q 011043 443 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 491 (495)
Q Consensus 443 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~ 491 (495)
..++.++.+++++.++++.|.+++..++||++ + |+++|+||..||++
T Consensus 64 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~Giit~~di~~ 110 (111)
T cd04800 64 TAPPITIPPDATVFEALLLMLERGIHHLPVVD-D-GRLVGVISATDLLR 110 (111)
T ss_pred CCCCeEECCCCcHHHHHHHHHHcCCCeeeEeE-C-CEEEEEEEHHHhhc
Confidence 56788999999999999999999999999999 3 89999999999985
No 62
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.38 E-value=5.9e-12 Score=108.20 Aligned_cols=112 Identities=22% Similarity=0.430 Sum_probs=88.2
Q ss_pred CceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHH-----HhhcccccCcccccCHHHHHHcCCCCCC
Q 011043 363 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL-----AKDKAYAHINLSEMTIHQALQLGQDSYS 437 (495)
Q Consensus 363 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~-----~~~~~~~~l~~~~~~v~~~l~~~~~~~~ 437 (495)
++.++..++++.++++.|.+++...+||+|++|+++|+++..|+.+. ...+ .....+.++.++|
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~---~~~~~~~~v~~im-------- 70 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPIKRIQEG---GISRSELTVADVM-------- 70 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhhHHHHHc---CCCchheEHHHhc--------
Confidence 36788999999999999998999999999988999999999999852 1111 0112235567655
Q ss_pred CccccCCcceE--e----cCCCCHHHHHHHHHcCCCcEEEEEeCCC-CeEEEEEehHHHHH
Q 011043 438 PYELRSQRCQM--C----LPSDTLHKVMERLANPGVRRLVIVEAGS-KRVEGIVSLSDIFK 491 (495)
Q Consensus 438 ~~~~m~~~~~~--v----~~~~tL~~a~~~m~~~~~~~l~VVd~~~-~~lvGiIs~~DIl~ 491 (495)
.++... + .+++++.++++.|.+++.+++||+|+ + |+++|+||++||++
T Consensus 71 -----~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~-~~~~~~G~it~~di~~ 125 (126)
T cd04640 71 -----TPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDR-EHHQIRGIISTSDIAR 125 (126)
T ss_pred -----CchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEEC-CCCEEEEEEeHHHHhh
Confidence 333322 3 36899999999999999999999994 4 79999999999986
No 63
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.38 E-value=1.8e-11 Score=129.04 Aligned_cols=221 Identities=19% Similarity=0.281 Sum_probs=147.8
Q ss_pred EeeeeeCCCCeEEEEeehHHHHHHHHHHhcCC---CCCChhhHhhhhHHHHHHHHhhhccccCCCCcccCCCceeeCCCC
Q 011043 205 MAPLWDFSKARFVGVLSASDFILILRELGNHG---SNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPND 281 (495)
Q Consensus 205 ~~Pv~d~~~~~~vGilt~~Dii~~l~~~~~~~---~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~ 281 (495)
.+||+.+. .+.+|..++...+......+ .+++.++.... ++..+. ++++|..+++++.+++
T Consensus 41 ~~Piv~a~----m~~vT~~ela~ava~~GglG~i~~~~~~e~~~~~----I~~vk~--------~~dim~~~~v~i~~~~ 104 (486)
T PRK05567 41 NIPLLSAA----MDTVTEARMAIAMAREGGIGVIHKNMSIEEQAEE----VRKVKR--------SESGVVTDPVTVTPDT 104 (486)
T ss_pred CcCEEeCC----CCCcCHHHHHHHHHhCCCCCEecCCCCHHHHHHH----HHHhhh--------hhhcccCCCeEeCCCC
Confidence 37888752 24468888877775543221 12222221111 111111 2346788999999999
Q ss_pred cHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccccCcccccccCCCCC
Q 011043 282 NLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNR 361 (495)
Q Consensus 282 sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~~~m~ 361 (495)
++.+|+++|.+++++++||++ +++ +++|+++.+|++... ....++.++ |.
T Consensus 105 tv~ea~~~m~~~~~~~lpVvd---~~g---~lvGiVt~~DL~~~~------------~~~~~V~di------------m~ 154 (486)
T PRK05567 105 TLAEALALMARYGISGVPVVD---ENG---KLVGIITNRDVRFET------------DLSQPVSEV------------MT 154 (486)
T ss_pred CHHHHHHHHHHhCCCEEEEEc---cCC---EEEEEEEHHHhhhcc------------cCCCcHHHH------------cC
Confidence 999999999999999999993 556 899999999985311 012234444 76
Q ss_pred -CCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCCCCcc
Q 011043 362 -RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYE 440 (495)
Q Consensus 362 -~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~ 440 (495)
++++++.+++++.++++.|.+++++.+||+|++|+++|+||.+||++.........-......+..
T Consensus 155 ~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~~p~a~~d~~g~l~V~a------------- 221 (486)
T PRK05567 155 KERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEEFPNACKDEQGRLRVGA------------- 221 (486)
T ss_pred CCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhhCCCcccccCCCEEEEe-------------
Confidence 678999999999999999999999999999999999999999999986422100000000011111
Q ss_pred ccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHH
Q 011043 441 LRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 492 (495)
Q Consensus 441 ~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~ 492 (495)
.....+ + -.+.++.|.+.+++.+ |+|..+++..++++.-+.++.
T Consensus 222 -----ai~~~~-~-~~e~a~~L~~agvdvi-vvD~a~g~~~~vl~~i~~i~~ 265 (486)
T PRK05567 222 -----AVGVGA-D-NEERAEALVEAGVDVL-VVDTAHGHSEGVLDRVREIKA 265 (486)
T ss_pred -----ecccCc-c-hHHHHHHHHHhCCCEE-EEECCCCcchhHHHHHHHHHh
Confidence 111222 2 2678889999999854 777445788887777666654
No 64
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.37 E-value=8.1e-12 Score=104.79 Aligned_cols=108 Identities=14% Similarity=0.282 Sum_probs=89.4
Q ss_pred ceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccccCcccc
Q 011043 274 LVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWV 353 (495)
Q Consensus 274 ~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~ 353 (495)
++++.+++++.+|++.|.+++.+.+||+ ++++ +++|+++..|+++.... . ....++.++
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~V~---d~~~---~~~G~v~~~dl~~~~~~---~------~~~~~v~~~------ 61 (111)
T cd04603 3 TVSVNCENPLREAIKMINELGARAVVVV---DEEN---KVLGQVTLSDLLEIGPN---D------YETLKVCEV------ 61 (111)
T ss_pred eEEeCCCCcHHHHHHHHHHcCCCEEEEE---cCCC---CEEEEEEHHHHHhhccc---c------ccccChhhe------
Confidence 5678999999999999999999999999 3556 89999999999763110 0 011233333
Q ss_pred cccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011043 354 PKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (495)
Q Consensus 354 ~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~ 408 (495)
|..++.++.+++++.+|+++|.+++.+.+||+|++|+++|++|.+|+++
T Consensus 62 ------~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~~ 110 (111)
T cd04603 62 ------YIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELLR 110 (111)
T ss_pred ------eecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence 7777889999999999999999999999999998899999999999875
No 65
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.37 E-value=1.2e-11 Score=104.17 Aligned_cols=110 Identities=20% Similarity=0.351 Sum_probs=89.0
Q ss_pred CceeecCCCCHHHHHHHHHHCC-CCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCCCCccc
Q 011043 363 PLAMLRPSASLSAALNLLVQAQ-VSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL 441 (495)
Q Consensus 363 ~~~~v~~~~sl~~a~~~m~~~~-~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~ 441 (495)
++.++.++.++.++++.|.+.+ ...++|+| +|+++|+++..|+++...... ...+.++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~----~~~~~~i~~~~------------ 64 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE-KGRLLGIFTERDIVRLTAIGK----DLSDLPIGEVM------------ 64 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC-CCcEEEEEeHHHHHHHHhcCC----CccccCHHHhc------------
Confidence 3567889999999999998888 66777777 589999999999987654321 11234566654
Q ss_pred cCCcceEecCC--CCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHH
Q 011043 442 RSQRCQMCLPS--DTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 491 (495)
Q Consensus 442 m~~~~~~v~~~--~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~ 491 (495)
..++.++.++ +++.+|++.|.+++...+||+|+ +|+++|+||++||++
T Consensus 65 -~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~-~~~~~Gvit~~dl~~ 114 (115)
T cd04620 65 -TQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDD-QGQLIGLVTAESIRQ 114 (115)
T ss_pred -CCCcEEEecccccCHHHHHHHHHHhCCceEEEEcC-CCCEEEEEEhHHhhc
Confidence 5567888877 78999999999999999999995 699999999999986
No 66
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.37 E-value=1.9e-11 Score=102.30 Aligned_cols=111 Identities=14% Similarity=0.318 Sum_probs=90.5
Q ss_pred CceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCCCCcccc
Q 011043 363 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 442 (495)
Q Consensus 363 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~m 442 (495)
.+.++.+++++.++++.|.+++...++|.+ +|+++|+++.+|+++...... ..+...++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~---~~~~~~~v~~~~------------- 64 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVME-RGELVGLLTFREVLQAMAQHG---AGVLDTTVRAIM------------- 64 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEee-CCEEEEEEEHHHHHHHHHhcC---CchhcCCHHHHh-------------
Confidence 356789999999999999888887887765 599999999999987654321 011234677755
Q ss_pred CCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHH
Q 011043 443 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 492 (495)
Q Consensus 443 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~ 492 (495)
..++.++.+++++.+++++|..++..++||+| +|+++|+||.+||+++
T Consensus 65 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~--~~~~~Gvvt~~dl~~~ 112 (112)
T cd04625 65 NPEPIVASPDDSIDEVRRLMVERHLRYLPVLD--GGTLLGVISFHDVAKA 112 (112)
T ss_pred CCCCeEECCCCCHHHHHHHHHHcCCCeeeEEE--CCEEEEEEEHHHhhcC
Confidence 55688999999999999999999999999999 4899999999999864
No 67
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.36 E-value=1.6e-11 Score=102.53 Aligned_cols=110 Identities=24% Similarity=0.396 Sum_probs=92.1
Q ss_pred CceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCCCCcccc
Q 011043 363 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 442 (495)
Q Consensus 363 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~m 442 (495)
++..+.+++++.++++.|.+.+.+.+||+|+ ++++|+++..|+.+....... ...++.+. |
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~~~-----~~~~~~~~-------------~ 62 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD-GRLVGIVTLADIRRVPAEGRE-----ATVLVGDV-------------M 62 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC-CeEEEEEEHHHHHHHHhcCcc-----cccCHHHh-------------c
Confidence 4678899999999999999888999999997 999999999999875543211 01234443 3
Q ss_pred CCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHH
Q 011043 443 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 492 (495)
Q Consensus 443 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~ 492 (495)
.+++.++..++++.++++.|.+.+.+.+||+|+ +|+++|+||..||+++
T Consensus 63 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~it~~di~~~ 111 (111)
T cd04612 63 TRDPVTASPDETLRDALKRMAERDIGRLPVVDD-SGRLVGIVSRSDLLRA 111 (111)
T ss_pred cCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcC-CCCEEEEEEHHHhhhC
Confidence 667899999999999999999999999999994 6899999999999863
No 68
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.36 E-value=1.3e-11 Score=104.11 Aligned_cols=111 Identities=19% Similarity=0.265 Sum_probs=91.8
Q ss_pred ceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccccCcccc
Q 011043 274 LVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWV 353 (495)
Q Consensus 274 ~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~ 353 (495)
+.++.+++++.+|++.|.+++...+||+ ++++ +++|+++..++++.+...... ....++.++
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv---d~~g---~~~G~vt~~dl~~~~~~~~~~------~~~~~v~~~------ 64 (114)
T cd04619 3 LAKIDVNATLQRAAKILGEPGIDLVVVC---DPHG---KLAGVLTKTDVVRQMGRCGGP------GCTAPVENV------ 64 (114)
T ss_pred eEEECCCCcHHHHHHHHHhcCCCEEEEE---CCCC---CEEEEEehHHHHHHHhhcCCC------cccCCHHHH------
Confidence 5678999999999999999999999999 4566 899999999998765321000 112334444
Q ss_pred cccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011043 354 PKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (495)
Q Consensus 354 ~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~ 408 (495)
|..+++++.+++++.+|++.|.+++...+||+|++|+++|+|+++|+++
T Consensus 65 ------~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 65 ------MTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARDALK 113 (114)
T ss_pred ------hcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence 7778899999999999999999999999999998899999999999864
No 69
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.36 E-value=1.9e-11 Score=102.07 Aligned_cols=109 Identities=23% Similarity=0.348 Sum_probs=92.6
Q ss_pred CceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCCCCcccc
Q 011043 363 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 442 (495)
Q Consensus 363 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~m 442 (495)
++.++.+++++.++++.|.+.+...+||+|+ ++++|+++.+|+.+....... ...++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~~l~~~~~~~~~-----~~~~v~~~~------------- 62 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDD-GRPLGIVTERDILRLLASGPD-----LQTPVGEVM------------- 62 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEeHHHHHHHHhcCCC-----CCcCHHHhc-------------
Confidence 4567899999999999999888999999986 999999999999986643311 235666654
Q ss_pred CCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHH
Q 011043 443 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 491 (495)
Q Consensus 443 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~ 491 (495)
.+++.++.+++++.++++.|.+.+.+.+||+|+ +|+++|+||..||++
T Consensus 63 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~-~~~~~Gvi~~~di~~ 110 (111)
T cd04611 63 SSPLLTVPADTSLYDARQLMREHGIRHLVVVDD-DGELLGLLSQTDLLQ 110 (111)
T ss_pred CCCceEECCCCCHHHHHHHHHHcCCeEEEEECC-CCcEEEEEEhHHhhc
Confidence 557889999999999999999999999999994 689999999999985
No 70
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.36 E-value=1.3e-11 Score=103.41 Aligned_cols=111 Identities=15% Similarity=0.316 Sum_probs=91.2
Q ss_pred CceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCCCCcccc
Q 011043 363 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 442 (495)
Q Consensus 363 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~m 442 (495)
++.++.+++++.++++.|.+++.+.+||+++ ++++|+++..|++........ .....++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~---~~~~~~v~~i~------------- 64 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG-NKLVGIFTSKDIALRVVAQGL---DPESTLVERVM------------- 64 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHHhcCC---CcCcCCHHHhc-------------
Confidence 4677899999999999999889999999987 999999999999853322111 11124566644
Q ss_pred CCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHH
Q 011043 443 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 491 (495)
Q Consensus 443 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~ 491 (495)
..++.++.+++++.++++.|..++.+++||+++ +++++|+||..||+.
T Consensus 65 ~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 65 TPNPVCATSDTPVLEALHLMVQGKFRHLPVVDK-SGQVVGLLDVTKLTH 112 (113)
T ss_pred CCCCeEEcCCCCHHHHHHHHHHcCCCcccEECC-CCCEEEEEEHHHhcc
Confidence 567889999999999999999999999999994 689999999999975
No 71
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.36 E-value=9.2e-12 Score=128.25 Aligned_cols=118 Identities=16% Similarity=0.283 Sum_probs=100.2
Q ss_pred ccCCCCCC--CceeecCCCCHHHHHHHHHHCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHc
Q 011043 355 KIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQL 431 (495)
Q Consensus 355 ~v~~~m~~--~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~-g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~ 431 (495)
.++++|.+ ++++++.++++.++++.+.+++++++||++++ ++++|+++.+|++...... ..++.+++
T Consensus 192 ~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~~~--------~~~l~~~~-- 261 (408)
T TIGR03520 192 DTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLNKK--------NFDWQSLL-- 261 (408)
T ss_pred EeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhccC--------CCCHHHHc--
Confidence 34555876 78999999999999999999999999999764 6899999999998643321 13455543
Q ss_pred CCCCCCCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 011043 432 GQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 495 (495)
Q Consensus 432 ~~~~~~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l~~ 495 (495)
+++.++++++++.++++.|.+++.|..+|+|+ .|.++|+||..||++.++|
T Consensus 262 ------------~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE-~G~~~GiVT~eDileeivg 312 (408)
T TIGR03520 262 ------------REPYFVPENKKLDDLLRDFQEKKNHLAIVVDE-YGGTSGLVTLEDIIEEIVG 312 (408)
T ss_pred ------------CCCeEeCCCCcHHHHHHHHHhcCceEEEEEcC-CCCEEEEEEHHHHHHHHhC
Confidence 35789999999999999999999999999994 7999999999999999876
No 72
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.35 E-value=1.3e-11 Score=104.88 Aligned_cols=114 Identities=18% Similarity=0.372 Sum_probs=91.9
Q ss_pred CceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhccccc------CcccccCHHHHHHcCCCCC
Q 011043 363 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAH------INLSEMTIHQALQLGQDSY 436 (495)
Q Consensus 363 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~------l~~~~~~v~~~l~~~~~~~ 436 (495)
++.++.+++++.++++.|.+.+.+++||+|+ |+++|+++..++.+......... ..+...++.++
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 72 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG-GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDI-------- 72 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC-CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHH--------
Confidence 4678899999999999999999999999996 99999999999987544211100 01112344443
Q ss_pred CCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHH
Q 011043 437 SPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 492 (495)
Q Consensus 437 ~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~ 492 (495)
|..++.++.+++++.+++++|.+.+.+.+||+| + |+++|+||..||+++
T Consensus 73 -----~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~Gvi~~~dl~~~ 121 (121)
T cd04633 73 -----MTRPVITIEPDTSVSDVASLMLENNIGGLPVVD-D-GKLVGIVTRTDILRY 121 (121)
T ss_pred -----ccCCceEECCCCcHHHHHHHHHHcCCCcccEEE-C-CEEEEEEEHHHhhcC
Confidence 456788999999999999999999999999999 4 899999999999864
No 73
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.35 E-value=1.7e-11 Score=103.28 Aligned_cols=106 Identities=25% Similarity=0.365 Sum_probs=88.1
Q ss_pred CceeecCCCCHHHHHHHHHHCCCCEEEEEcC---CCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCCCCc
Q 011043 363 PLAMLRPSASLSAALNLLVQAQVSSIPIVDD---NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPY 439 (495)
Q Consensus 363 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~---~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~ 439 (495)
++.++.+++++.++++.|.+.+...+||+|+ +|+++|+++..|+..... . ..++.+++
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~~-~--------~~~v~~~~---------- 63 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTD-S--------ETPLSEVM---------- 63 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhhc-c--------CCCHHHhc----------
Confidence 4567889999999999999889899999997 789999999999875321 1 13466654
Q ss_pred cccCCcceEecC--CCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHH
Q 011043 440 ELRSQRCQMCLP--SDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 491 (495)
Q Consensus 440 ~~m~~~~~~v~~--~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~ 491 (495)
...+.++.. ++++.++++.|.+++.+.+||||+ +|+++|+||..||++
T Consensus 64 ---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~-~~~~~Gvit~~di~~ 113 (114)
T cd04602 64 ---TPREVLVVAPTGITLEEANEILRESKKGKLPIVND-DGELVALVTRSDLKK 113 (114)
T ss_pred ---CCCceEEECCCCCCHHHHHHHHHhcCCCceeEECC-CCeEEEEEEHHHhhc
Confidence 445666655 999999999999999999999984 689999999999975
No 74
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.34 E-value=8.6e-12 Score=134.72 Aligned_cols=123 Identities=19% Similarity=0.236 Sum_probs=102.8
Q ss_pred ccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCC
Q 011043 355 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQD 434 (495)
Q Consensus 355 ~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~ 434 (495)
+++++|.+++.++++++++.++++.|.+++.+.+||+|++++++|+++.+|+.+....... ..+.++.+++
T Consensus 448 ~V~dim~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~~~~----~~~~~v~dim----- 518 (574)
T PRK01862 448 QMRELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDKRD----TTDKTAADYA----- 518 (574)
T ss_pred cHHHHhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhcccc----cccchHHHhc-----
Confidence 4566788889999999999999999999999999999999999999999999875432211 1124556544
Q ss_pred CCCCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCC-CeEEEEEehHHHHHHhh
Q 011043 435 SYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGS-KRVEGIVSLSDIFKFLL 494 (495)
Q Consensus 435 ~~~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~-~~lvGiIs~~DIl~~l~ 494 (495)
.+++.++++++++.+++++|.+++.+++||||+++ ++++|+||++||++++.
T Consensus 519 --------~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~ 571 (574)
T PRK01862 519 --------HTPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYR 571 (574)
T ss_pred --------cCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHH
Confidence 66789999999999999999999999999999532 58999999999999874
No 75
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.34 E-value=2e-11 Score=103.57 Aligned_cols=115 Identities=23% Similarity=0.374 Sum_probs=92.1
Q ss_pred CceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCc------ccccCHHHHHHcCCCCC
Q 011043 363 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHIN------LSEMTIHQALQLGQDSY 436 (495)
Q Consensus 363 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~------~~~~~v~~~l~~~~~~~ 436 (495)
++.++.++.++.++++.|.+.+...+||+|+ |+++|+++..|+............. ....++.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 71 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR-GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSD--------- 71 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecC-CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHH---------
Confidence 4667899999999999999999999999997 9999999999998765322110000 01123333
Q ss_pred CCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHH
Q 011043 437 SPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 492 (495)
Q Consensus 437 ~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~ 492 (495)
+|.+++.++.+++++.++++.|.+.+.+++||+++ +|+++|+||..||++.
T Consensus 72 ----~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvvt~~di~~~ 122 (122)
T cd04585 72 ----IMTRDPITVSPDASVEEAAELMLERKISGLPVVDD-QGRLVGIITESDLFRA 122 (122)
T ss_pred ----hccCCCeEeCCCCcHHHHHHHHHHcCCCceeEECC-CCcEEEEEEHHHhhhC
Confidence 34667899999999999999999999999999994 6899999999999863
No 76
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.34 E-value=1.5e-11 Score=104.29 Aligned_cols=111 Identities=23% Similarity=0.384 Sum_probs=90.2
Q ss_pred CceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccccCccc
Q 011043 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 352 (495)
Q Consensus 273 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 352 (495)
+++++.+++++.+|++.|.++++..+||+ ++++ +++|+++..++++....... ....++.++
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~---d~~~---~~~Givt~~dl~~~~~~~~~-------~~~~~~~~~----- 63 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVV---DEDG---DLVGVVSRKDLLKASIGGAD-------LQKVPVGVI----- 63 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEE---cCCC---CEEEEEEHHHHHHHHHcCCC-------ccCCCHHHH-----
Confidence 57889999999999999999999999999 3456 79999999999886542110 001222222
Q ss_pred ccccCCCCCC--CceeecCCCCHHHHHHHHHHCCCCEEEEEcCC---CcEEEEEeHHHHHH
Q 011043 353 VPKIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDN---DSLLDIYCRSDITA 408 (495)
Q Consensus 353 ~~~v~~~m~~--~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~---g~lvGivs~~Dl~~ 408 (495)
|.+ ++.++.+++++.+++++|.+++++.+||+|++ |+++|+||++|+++
T Consensus 64 -------~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 64 -------MTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred -------hCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 553 67899999999999999999999999999876 69999999999865
No 77
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.34 E-value=2.9e-11 Score=101.33 Aligned_cols=111 Identities=22% Similarity=0.399 Sum_probs=91.3
Q ss_pred CceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHH-HHHhhcccccCcccccCHHHHHHcCCCCCCCccc
Q 011043 363 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT-ALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL 441 (495)
Q Consensus 363 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~-~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~ 441 (495)
++.++.+++++.+|++.|.+.+.+++||+|+ |+++|+++..|++ +....+. .....++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~i~~~~l~~~~~~~~~----~~~~~~~~~~~------------ 64 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCEN-DRLVGIVTDRDIVVRAVAEGR----DPDTTTVGDVM------------ 64 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEhHHHHHHHhhccC----CcccCCHHHhc------------
Confidence 4678899999999999999999999999997 9999999999987 3332221 11123466654
Q ss_pred cCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHH
Q 011043 442 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 492 (495)
Q Consensus 442 m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~ 492 (495)
...+.++.+++++.++++.|...+.+++||+|+ +|+++|+||..|++++
T Consensus 65 -~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~it~~di~~~ 113 (113)
T cd04622 65 -TRGVVTVTEDDDVDEAARLMREHQVRRLPVVDD-DGRLVGIVSLGDLARA 113 (113)
T ss_pred -cCCccEECCCCCHHHHHHHHHHcCCCeeeEECC-CCcEEEEEEHHHhhcC
Confidence 557888999999999999999999999999984 6899999999999863
No 78
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.33 E-value=1.5e-11 Score=102.54 Aligned_cols=106 Identities=21% Similarity=0.425 Sum_probs=88.7
Q ss_pred CceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCCCCcccc
Q 011043 363 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 442 (495)
Q Consensus 363 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~m 442 (495)
++..+..+.++.++++.|.+.+...+||+|++|+++|+++.+++..... ...++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~---------~~~~v~~~~------------- 60 (110)
T cd04601 3 DPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRFETD---------LDKPVSEVM------------- 60 (110)
T ss_pred CCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeeeccc---------CCCCHHHhc-------------
Confidence 4678899999999999999999999999998899999999999864311 124666654
Q ss_pred CCcceEecC-CCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHH
Q 011043 443 SQRCQMCLP-SDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 491 (495)
Q Consensus 443 ~~~~~~v~~-~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~ 491 (495)
...+..+.. ++++.++++.|.+.+.+.+||+|+ +|+++|+||.+|+++
T Consensus 61 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvi~~~dil~ 109 (110)
T cd04601 61 TPENLLTTVEGTSLEEALELLHEHKIEKLPVVDD-EGKLKGLITVKDIEK 109 (110)
T ss_pred ccCceEEecCCCCHHHHHHHHHHhCCCeeeEEcC-CCCEEEEEEhhhhhc
Confidence 344555666 999999999999999999999994 789999999999985
No 79
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.33 E-value=1.6e-11 Score=102.46 Aligned_cols=103 Identities=17% Similarity=0.316 Sum_probs=87.2
Q ss_pred ecCCCCHHHHHHHHHHCC-----CCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCCCCccc
Q 011043 367 LRPSASLSAALNLLVQAQ-----VSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL 441 (495)
Q Consensus 367 v~~~~sl~~a~~~m~~~~-----~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~ 441 (495)
+.+++++.++++.|.+++ +..+||+|++|+++|+++.++++.. . .+.++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~~---~-------~~~~v~~~~------------ 59 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLA---D-------PDTPVSDIM------------ 59 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhcC---C-------CcchHHHHh------------
Confidence 567889999999998776 4789999988999999999998752 1 124566654
Q ss_pred cCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHh
Q 011043 442 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 493 (495)
Q Consensus 442 m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l 493 (495)
..++.++.+++++.++++.|...+.+.+||+|+ +++++|+||..||++++
T Consensus 60 -~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~dll~~~ 109 (109)
T cd04606 60 -DTDVISVSADDDQEEVARLFEKYDLLALPVVDE-EGRLVGIITVDDVIDVI 109 (109)
T ss_pred -CCCCeEEcCCCCHHHHHHHHHHcCCceeeeECC-CCcEEEEEEhHHhhhhC
Confidence 557899999999999999999999999999994 68999999999999864
No 80
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.32 E-value=2.9e-11 Score=103.20 Aligned_cols=122 Identities=20% Similarity=0.363 Sum_probs=94.2
Q ss_pred CCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccccCcc
Q 011043 272 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 351 (495)
Q Consensus 272 ~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~ 351 (495)
++++++.+++++.++++.|.+++.+++||++ ++| +++|+++..++++++...... .....+. ...
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~---~~~---~~~Giv~~~~l~~~~~~~~~~--~~~~~~~-------~~~ 66 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVD---GDR---RLVGIVTQRDLLRHARPDGRR--PLRGRLR-------GRD 66 (124)
T ss_pred CCcEEeCCCCCHHHHHHHHHHcCCceeeEEC---CCC---CEEEEEEHHHHHhhhcccccc--hhhhhhh-------ccc
Confidence 4678899999999999999999999999993 446 899999999998766432110 0000000 000
Q ss_pred cccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011043 352 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (495)
Q Consensus 352 ~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~ 408 (495)
....+.++|.+.+.++.+++++.++++.|.+.+.+.+||+|++|+++|++|.+|+++
T Consensus 67 ~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~ 123 (124)
T cd04600 67 KPETVGDIMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA 123 (124)
T ss_pred ccccHHHhccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence 111233447778999999999999999999999999999998999999999999875
No 81
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.31 E-value=4e-11 Score=100.88 Aligned_cols=112 Identities=17% Similarity=0.288 Sum_probs=91.3
Q ss_pred CceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccccCccc
Q 011043 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 352 (495)
Q Consensus 273 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 352 (495)
+++++.+++++.+|++.|.+++.+.+||++ ++++ +++|+++..|+++.+...... ....++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~--~~~~---~~~G~v~~~dl~~~~~~~~~~------~~~~~v~~~----- 65 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEK--RRES---DAYGIVTMRDILKKVVAEGRD------PDRVNVYEI----- 65 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEE--CCCC---cEEEEEehHHHHHHHHhCCCC------CCccCHHHH-----
Confidence 567899999999999999999999999994 2226 799999999998866432110 011234443
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011043 353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (495)
Q Consensus 353 ~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~ 408 (495)
|..++.++.+++++.++++.|.+.+...+||+|+ |+++|+|+..|+++
T Consensus 66 -------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~ 113 (114)
T cd04630 66 -------MTKPLISVSPDMDIKYCARLMERTNIRRAPVVEN-NELIGIISLTDIFL 113 (114)
T ss_pred -------hcCCCeeECCCCCHHHHHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence 7778899999999999999999999999999987 99999999999875
No 82
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.31 E-value=4.3e-11 Score=99.58 Aligned_cols=109 Identities=19% Similarity=0.363 Sum_probs=88.7
Q ss_pred CceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCCCCcccc
Q 011043 363 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 442 (495)
Q Consensus 363 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~m 442 (495)
++.++.+++++.++++.|.+.+.+.+||+|+ ++++|+++..|+.+....... ....++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~----~~~~~~~~~~------------- 63 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDALIEGKA----KFSLPVREVM------------- 63 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-CeeEEEEeHHHHHHHHhcccc----ccCcCHHHHh-------------
Confidence 3567899999999999999999999999997 999999999999986543211 0124566654
Q ss_pred CCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHH
Q 011043 443 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 492 (495)
Q Consensus 443 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~ 492 (495)
.+++.++++++++.+++++|.+ . ..+||+++ +|+++|+||++||+++
T Consensus 64 ~~~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~~-~~~~~Gvvt~~di~~~ 110 (110)
T cd04609 64 GEPLPTVDPDAPIEELSELLDR-G-NVAVVVDE-GGKFVGIITRADLLKY 110 (110)
T ss_pred cCCCceeCCCCcHHHHHHHHHh-C-CceeEEec-CCeEEEEEeHHHhhcC
Confidence 5578889999999999999988 3 34788884 6999999999999874
No 83
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.31 E-value=4e-11 Score=102.08 Aligned_cols=115 Identities=14% Similarity=0.236 Sum_probs=91.4
Q ss_pred CceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcc-cccC-----cccccCHHHHHHcCCCCC
Q 011043 363 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKA-YAHI-----NLSEMTIHQALQLGQDSY 436 (495)
Q Consensus 363 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~-~~~l-----~~~~~~v~~~l~~~~~~~ 436 (495)
++.++.+++++.++++.|.+.+++.+||+|+ |+++|+++..++.+...... .... .....++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 71 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED-NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQ--------- 71 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC-CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHH---------
Confidence 4678899999999999999999999999996 99999999999987543210 0000 000123333
Q ss_pred CCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHH
Q 011043 437 SPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 492 (495)
Q Consensus 437 ~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~ 492 (495)
+|..++.++..++++.++++.|.+++...+||+|+ +++++|++|+.|++++
T Consensus 72 ----~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~-~~~~~Gvit~~dll~~ 122 (122)
T cd04637 72 ----IMTRDPITVSPDTPVDEASKLLLENSISCLPVVDE-NGQLIGIITWKDLLKY 122 (122)
T ss_pred ----hhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECC-CCCEEEEEEHHHhhhC
Confidence 34667899999999999999999999999999984 6899999999999864
No 84
>cd02858 Esterase_N_term Esterase N-terminal domain. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.31 E-value=1e-11 Score=98.87 Aligned_cols=74 Identities=22% Similarity=0.328 Sum_probs=62.1
Q ss_pred eEEEE-ecCCCceEEEEEccCCCCCCCCCCcccCCCCeEEEEE-EeCCceEEEEEEECCEEeeCCCCCeeeCCCCCeee
Q 011043 27 PMRFV-WPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIW-SIPPGYHQYKFCVDGEWRHDEHQPFISSEYGIVNT 103 (495)
Q Consensus 27 ~~~f~-~~~~~~~V~v~Gsf~~W~~~~~m~~~~~~~~~~~~~~-~l~~g~~~ykf~vdg~w~~d~~~~~~~~~~g~~nn 103 (495)
.++|+ |...|++|.|.|+|++|.. .+|.+. .+|.|++++ .|.+|.|+|+|+|||.|+.||.++...-..+..-|
T Consensus 7 ~v~F~vwAP~A~~V~L~~~~~~~~~-~~m~~~--~~G~W~~~v~~l~~g~Y~Y~~~vdg~~~~DP~s~~~~~~~~~~~~ 82 (85)
T cd02858 7 TVTFRLFAPKANEVQVRGSWGGAGS-HPMTKD--EAGVWSVTTGPLAPGIYTYSFLVDGVRVIDPSNPTTKPGRQVDTS 82 (85)
T ss_pred cEEEEEECCCCCEEEEEeecCCCcc-EeCeEC--CCeEEEEEECCCCCcEEEEEEEECCeEecCCCCCceeecccccce
Confidence 47888 9999999999999998876 689885 479999998 48889999999999999999999976544444433
No 85
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.31 E-value=7e-11 Score=98.88 Aligned_cols=110 Identities=19% Similarity=0.383 Sum_probs=90.6
Q ss_pred CceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCCCCcccc
Q 011043 363 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 442 (495)
Q Consensus 363 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~m 442 (495)
++.++.+++++.++++.|.+.+.+.+||+|+ ++++|+++..|++........ .....++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~~~---~~~~~~~~~~~------------- 64 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN-EKPVGIITERDLVKKVVSRNL---KPREVPVGEVM------------- 64 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHHHHHHHHhhccC---CcccCCHHHhc-------------
Confidence 4567899999999999999989999999985 499999999999975432211 01134566654
Q ss_pred CCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHH
Q 011043 443 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 491 (495)
Q Consensus 443 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~ 491 (495)
.+++.++.+++++.++++.|.+.+.+.+||+|+ ++++|+||..||++
T Consensus 65 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~Gvi~~~di~~ 111 (112)
T cd04802 65 STPLITIDPNASLNEAAKLMAKHGIKRLPVVDD--DELVGIVTTTDIVM 111 (112)
T ss_pred CCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeC--CEEEEEEEhhhhhc
Confidence 567889999999999999999999999999994 49999999999975
No 86
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.31 E-value=5.4e-11 Score=100.95 Aligned_cols=114 Identities=19% Similarity=0.387 Sum_probs=92.6
Q ss_pred CceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhccccc-----CcccccCHHHHHHcCCCCCC
Q 011043 363 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAH-----INLSEMTIHQALQLGQDSYS 437 (495)
Q Consensus 363 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~-----l~~~~~~v~~~l~~~~~~~~ 437 (495)
++.++.+++++.+|++.|.+.+.+++||+|++++++|+++..++........... ......++.+++
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------- 73 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIM-------- 73 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHHh--------
Confidence 4678899999999999999899999999998899999999999987543211000 011234566654
Q ss_pred CccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHH
Q 011043 438 PYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 491 (495)
Q Consensus 438 ~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~ 491 (495)
..++.++..++++.++++.|.+.+...+||++ + ++++|++|..||++
T Consensus 74 -----~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~~Gvv~~~di~~ 120 (121)
T cd04584 74 -----TKDVITVHPLDTVEEAALLMREHRIGCLPVVE-D-GRLVGIITETDLLR 120 (121)
T ss_pred -----hCCCeEECCCCcHHHHHHHHHHcCCCeEEEee-C-CEEEEEEEHHHhhc
Confidence 55788999999999999999999999999999 3 89999999999986
No 87
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.31 E-value=1.4e-10 Score=120.95 Aligned_cols=205 Identities=14% Similarity=0.168 Sum_probs=138.2
Q ss_pred cEeeeeeCCCCeEEEEeehHHHHHHHHHHhcCC---CCCChhhHhhhhHHHHHHHHhhhccccCCCCcccCCCceeeCCC
Q 011043 204 SMAPLWDFSKARFVGVLSASDFILILRELGNHG---SNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPN 280 (495)
Q Consensus 204 ~~~Pv~d~~~~~~vGilt~~Dii~~l~~~~~~~---~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~ 280 (495)
-.+|++.+ -..-+|..+....|.....-+ .++. +..+.+..... .+.++|..+++++.++
T Consensus 43 l~~Pi~sa----~Mdtvt~~~MAiaLAr~GGiGvih~nl~--------~~~q~~~l~~V-----Kv~~iMi~~pvtv~~d 105 (479)
T PRK07807 43 TTIPLVVA----NMTAVAGRRMAETVARRGGLVVLPQDIP--------IDVVAEVVAWV-----KSRDLVFDTPVTLSPD 105 (479)
T ss_pred cccceeec----CCcchhHHHHHHHHHHCCCceEeeCCCC--------HHHHHHHHhhc-----ccccccccCCeEECCC
Confidence 34788764 234467777776665443110 2332 22222222211 1235688999999999
Q ss_pred CcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccccCcccccccCCCC
Q 011043 281 DNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPN 360 (495)
Q Consensus 281 ~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~~~m 360 (495)
+++.+|+++|.+++++.+||+ ++++ +++|++|.+|+... . ...++.++ |
T Consensus 106 ~tv~eA~~~m~~~~~s~l~VV---D~~g---klvGIVT~rDL~~~-----~--------~~~~V~di------------M 154 (479)
T PRK07807 106 DTVGDALALLPKRAHGAVVVV---DEEG---RPVGVVTEADCAGV-----D--------RFTQVRDV------------M 154 (479)
T ss_pred CCHHHHHHHHHhcCCceEEEE---CCCC---eEEEEEeHHHHhcC-----c--------cCCCHHHh------------c
Confidence 999999999999999999999 3566 89999999998421 0 01234444 8
Q ss_pred CCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCCCCcc
Q 011043 361 RRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYE 440 (495)
Q Consensus 361 ~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~ 440 (495)
.++++++.+++++.+|+++|.++++..+||+|++++++|+||++||++........ +.-....+..
T Consensus 155 t~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~~~~-~~~g~l~V~a------------- 220 (479)
T PRK07807 155 STDLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYTPAV-DAAGRLRVAA------------- 220 (479)
T ss_pred cCCceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCCchh-hhhhccchHh-------------
Confidence 88999999999999999999999999999999889999999999999865433110 0000111221
Q ss_pred ccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCC
Q 011043 441 LRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSK 478 (495)
Q Consensus 441 ~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~ 478 (495)
. +.......+.++.|.+.++.. .++|..+|
T Consensus 221 -----a--v~~~~~~~~~a~~Lv~aGvd~-i~~D~a~~ 250 (479)
T PRK07807 221 -----A--VGINGDVAAKARALLEAGVDV-LVVDTAHG 250 (479)
T ss_pred -----h--hccChhHHHHHHHHHHhCCCE-EEEeccCC
Confidence 1 122234667778888888876 46664334
No 88
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.30 E-value=5.3e-11 Score=99.93 Aligned_cols=109 Identities=19% Similarity=0.361 Sum_probs=90.3
Q ss_pred ceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccccCcccc
Q 011043 274 LVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWV 353 (495)
Q Consensus 274 ~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~ 353 (495)
.+++.+++++.+|++.|.+++.+.++|+ ++++ +++|+++..|+++.+..... ...++.++
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~---d~~~---~~~G~v~~~dl~~~~~~~~~--------~~~~v~~~------ 63 (113)
T cd04607 4 QLLVSPDASILDALRKIDKNALRIVLVV---DENG---RLLGTVTDGDIRRALLKGLS--------LDDPVSEV------ 63 (113)
T ss_pred ceEECCCCCHHHHHHHHHhcCcCEEEEE---CCCC---CEEEEEEcHHHHHHHhcCCC--------cCCCHHHh------
Confidence 4678999999999999999999999999 3556 89999999999875543211 11233333
Q ss_pred cccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011043 354 PKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (495)
Q Consensus 354 ~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~ 408 (495)
|..++.++.+++++.++++.|.+++.+.+||+|++|+++|+||.+|++.
T Consensus 64 ------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 112 (113)
T cd04607 64 ------MNRNPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLLS 112 (113)
T ss_pred ------hcCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence 6777889999999999999999999999999998899999999999863
No 89
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.30 E-value=6.1e-11 Score=98.88 Aligned_cols=108 Identities=23% Similarity=0.454 Sum_probs=91.1
Q ss_pred CCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccccCcc
Q 011043 272 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 351 (495)
Q Consensus 272 ~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~ 351 (495)
++++++.+++++.+|++.|.+++...+||+ +++| +++|+++..++++.+.... .++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~---d~~~---~~~G~v~~~~l~~~~~~~~-----------~~~~~~---- 60 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVV---DEDG---RLVGIVTSWDISKAVARDK-----------KSVEDI---- 60 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEE---CCCC---cEEEEEeHHHHHHHHhhCc-----------cCHHHh----
Confidence 467889999999999999999999999999 3456 8999999999987553211 123333
Q ss_pred cccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011043 352 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (495)
Q Consensus 352 ~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~ 408 (495)
|.+++.++.+++++.++++.|.+++...+||++++|+++|++++.|+.+
T Consensus 61 --------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~ 109 (110)
T cd04605 61 --------MTRNVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDISK 109 (110)
T ss_pred --------cCCCCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence 6667889999999999999999999999999998899999999999864
No 90
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.30 E-value=5.5e-11 Score=98.22 Aligned_cols=103 Identities=17% Similarity=0.335 Sum_probs=88.7
Q ss_pred CceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCCCCcccc
Q 011043 363 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 442 (495)
Q Consensus 363 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~m 442 (495)
++..+.+++++.++++.|.+++...+||+| +++++|+++..|+.+... ..++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-~~~~~Giv~~~~l~~~~~----------~~~~~~~~------------- 57 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE-DGKLVGIITSRDVRRAHP----------NRLVADAM------------- 57 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEehHHhhcccc----------cCCHHHHc-------------
Confidence 456789999999999999989989999998 699999999999986321 23456554
Q ss_pred CCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHH
Q 011043 443 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 491 (495)
Q Consensus 443 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~ 491 (495)
..++.++..++++.++++.|.+++...+||+| + |+++|+||..||+.
T Consensus 58 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~G~it~~~l~~ 104 (105)
T cd04599 58 TREVVTISPEASLLEAKRLMEEKKIERLPVLR-E-RKLVGIITKGTIAL 104 (105)
T ss_pred cCCCEEECCCCCHHHHHHHHHHcCCCEeeEEE-C-CEEEEEEEHHHhcc
Confidence 55788999999999999999999999999999 3 99999999999973
No 91
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.29 E-value=3.4e-11 Score=103.40 Aligned_cols=126 Identities=28% Similarity=0.385 Sum_probs=92.8
Q ss_pred cceEEecCCCCHHHHHHHHHHcCCcEeeeeeCCCCeEEEEeehHHHHHHHHHHhcCCCCCChhhHhhhhHHHHHHHHhhh
Q 011043 180 GKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYL 259 (495)
Q Consensus 180 ~~vi~l~~~~~v~~A~~~l~e~~i~~~Pv~d~~~~~~vGilt~~Dii~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~ 259 (495)
+++++++.+.|+.+|++.|.++++..+||+|+. ++++|+++..|+.+............. . ...+......
T Consensus 1 ~~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~-~-----~~~~~~~~~~-- 71 (126)
T cd04642 1 SKVVSIDSDERVLDAFKLMRKNNISGLPVVDEK-GKLIGNISASDLKGLLLSPDDLLLYRT-I-----TFKELSEKFT-- 71 (126)
T ss_pred CCeEEECCCccHHHHHHHHHHhCCCcccEECCC-CcEEEEEEHHHhhhhhcCcchhhcccc-h-----hhhhhhhhcc--
Confidence 368899999999999999999999999999965 899999999999876521110000000 0 0000000000
Q ss_pred ccccCCCCcccCCCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHH
Q 011043 260 NRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKC 325 (495)
Q Consensus 260 ~~~~~~~g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~ 325 (495)
.....+..+++.+.+++++.+|+++|.+++++.+||+ ++++ +++|++|..||++|
T Consensus 72 -----~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv---d~~~---~~~Giit~~dil~~ 126 (126)
T cd04642 72 -----DSDGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVV---DEEG---KPIGVITLTDIISI 126 (126)
T ss_pred -----cccccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEE---CCCC---CEEEEEEHHHHhcC
Confidence 1122467789999999999999999999999999999 3446 89999999999863
No 92
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.29 E-value=6.9e-11 Score=98.90 Aligned_cols=110 Identities=20% Similarity=0.408 Sum_probs=91.6
Q ss_pred CceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccccCccc
Q 011043 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 352 (495)
Q Consensus 273 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 352 (495)
++..+.+++++.+|++.|.+.+.+.+||++ +++ +++|+++..++++.+..... ...++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d---~~~---~~~G~v~~~~l~~~~~~~~~--------~~~~v~~~----- 62 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVD---PDE---RPIGIVTERDIVRAVAAGID--------LDTPVSEI----- 62 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEEC---CCC---CEEEEeeHHHHHHHHhccCC--------CccCHHHh-----
Confidence 467889999999999999999999999993 456 89999999999886654211 12233333
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011043 353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (495)
Q Consensus 353 ~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~ 408 (495)
|..++..+.+++++.++++.|.+++...+||++++|+++|++|.+|+++
T Consensus 63 -------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~ 111 (112)
T cd04624 63 -------MTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVR 111 (112)
T ss_pred -------ccCCCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence 6778899999999999999999999999999998899999999999864
No 93
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.29 E-value=9.8e-11 Score=97.10 Aligned_cols=112 Identities=25% Similarity=0.474 Sum_probs=92.7
Q ss_pred CceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCCCCcccc
Q 011043 363 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 442 (495)
Q Consensus 363 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~m 442 (495)
++.++..+.++.++++.|.+.+...+||++++++++|+++.+|+........... ...+.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~~~----~~~~~~~~------------- 64 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGGLDP----LVTVGDVM------------- 64 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHhccCCc----cccHHHHh-------------
Confidence 4567889999999999999988999999998899999999999998665432111 11134433
Q ss_pred CCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHH
Q 011043 443 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 492 (495)
Q Consensus 443 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~ 492 (495)
..++.++.+++++.++++.|.+.+.+.+||+|+ +++++|+|+..|++++
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~i~~~dl~~~ 113 (113)
T cd02205 65 TRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDD-EGRLVGIVTRSDILRA 113 (113)
T ss_pred cCCceecCCCcCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEEHHHhhcC
Confidence 567888999999999999999999999999995 6999999999999863
No 94
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.29 E-value=8.4e-11 Score=98.32 Aligned_cols=111 Identities=20% Similarity=0.394 Sum_probs=91.1
Q ss_pred CceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccccCccc
Q 011043 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 352 (495)
Q Consensus 273 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 352 (495)
+++.+.+++++.++++.|.+++.+.+||++ +++ +++|+++..++++.+...... ....++.++
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~---~~~---~~~Giv~~~~l~~~~~~~~~~------~~~~~~~~~----- 64 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVD---DGG---RLVGIFSERDIVRKVALRGAS------ALDTPVSEI----- 64 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEC---CCC---CEEEEEehHHHHHHHhhcCCC------ccccCHHHh-----
Confidence 567889999999999999999999999993 446 899999999999876532111 011233333
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011043 353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (495)
Q Consensus 353 ~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~ 408 (495)
|.+++..+.+++++.++++.|.+.+.+.+||+++ |+++|++|.+|+++
T Consensus 65 -------~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 112 (113)
T cd04623 65 -------MTRNVITVTPDDTVDEAMALMTERRFRHLPVVDG-GKLVGIVSIGDVVK 112 (113)
T ss_pred -------cCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence 7778899999999999999999999999999986 99999999999875
No 95
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.28 E-value=7.3e-11 Score=96.39 Aligned_cols=94 Identities=17% Similarity=0.298 Sum_probs=83.2
Q ss_pred CceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccccCccc
Q 011043 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 352 (495)
Q Consensus 273 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 352 (495)
+++.+.+++++.+|++.|.+++++.+||+ ++++ +++|+++..|+++..
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~---d~~~---~~~Giv~~~dl~~~~-------------------------- 49 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVL---DDDG---KLSGIITERDLIAKS-------------------------- 49 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEE---CCCC---CEEEEEEHHHHhcCC--------------------------
Confidence 56789999999999999999999999999 3556 899999999997411
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011043 353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (495)
Q Consensus 353 ~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~ 408 (495)
.+.++.+++++.+++++|.+++.+.+||+|++|+++|++|++|+++
T Consensus 50 ----------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~ 95 (96)
T cd04614 50 ----------EVVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLLK 95 (96)
T ss_pred ----------CcEEecCCCCHHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 1567899999999999999999999999998899999999999875
No 96
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.28 E-value=5.1e-11 Score=125.12 Aligned_cols=111 Identities=14% Similarity=0.166 Sum_probs=97.3
Q ss_pred CCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcC---CCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCC
Q 011043 360 NRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDD---NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSY 436 (495)
Q Consensus 360 m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~---~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~ 436 (495)
|.++++++.+++++.+++++|.+++++.+||+|+ +++++|+||.+|+.... ..+.++.++|
T Consensus 106 mi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~---------~~~~~V~eIM------- 169 (505)
T PLN02274 106 FVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN---------DRETKLSEVM------- 169 (505)
T ss_pred ccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc---------ccCCcHHHHh-------
Confidence 5578899999999999999999999999999986 48999999999996532 1246788876
Q ss_pred CCccccCCc--ceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHh
Q 011043 437 SPYELRSQR--CQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 493 (495)
Q Consensus 437 ~~~~~m~~~--~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l 493 (495)
+++ ++++.+++++.+|++.|.+++...+||||+ +++++|+||++||++++
T Consensus 170 ------t~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~-~g~LvGvITr~DIlk~~ 221 (505)
T PLN02274 170 ------TSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNE-DGELVDLVTRTDVKRVK 221 (505)
T ss_pred ------ccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHHHh
Confidence 433 889999999999999999999999999995 68999999999999876
No 97
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.28 E-value=7e-11 Score=97.79 Aligned_cols=100 Identities=17% Similarity=0.265 Sum_probs=86.2
Q ss_pred eeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCCCCccccCC
Q 011043 365 AMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQ 444 (495)
Q Consensus 365 ~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~m~~ 444 (495)
+++.+++++.++++.|.+.+...+||+|+ ++++|+++..|+.+.. ..++.+++ ..
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~-----------~~~~~~~~-------------~~ 58 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY-NKFLGAVYLKDIENAT-----------YGDVVDYI-------------VR 58 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHHhhhc-----------ccchhhhh-------------hc
Confidence 46789999999999999999999999997 9999999999997631 12344433 45
Q ss_pred cceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHH
Q 011043 445 RCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 491 (495)
Q Consensus 445 ~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~ 491 (495)
.+.++.+++++.++++.|.+++...+||+| +|+++|+||..||++
T Consensus 59 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~--~~~~iGvit~~dl~~ 103 (104)
T cd04594 59 GIPYVRLTSTAEEAWEVMMKNKTRWCPVVD--DGKFKGIVTLDSILD 103 (104)
T ss_pred CCcEEcCCCCHHHHHHHHHHcCcceEEEEE--CCEEEEEEEHHHhhc
Confidence 688999999999999999999999999998 489999999999975
No 98
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.28 E-value=4.4e-11 Score=124.80 Aligned_cols=112 Identities=18% Similarity=0.348 Sum_probs=98.0
Q ss_pred CCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCC---CcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCC
Q 011043 359 PNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN---DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDS 435 (495)
Q Consensus 359 ~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~---g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~ 435 (495)
.|.++++++.+++++.+++++|.+++++++||+|++ ++++|+|+.+|++.... ...++.+++
T Consensus 85 ~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~~---------~~~~V~dvm------ 149 (450)
T TIGR01302 85 GIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVKD---------KGKPVSEVM------ 149 (450)
T ss_pred ceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhhc---------CCCCHHHhh------
Confidence 366788999999999999999999999999999987 79999999999975321 135677765
Q ss_pred CCCccccC-CcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHh
Q 011043 436 YSPYELRS-QRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 493 (495)
Q Consensus 436 ~~~~~~m~-~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l 493 (495)
. .+++++++++++.++++.|.+++.+.+||||+ +|+++|+||+.||++.+
T Consensus 150 -------~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe-~G~lvGiVT~~DIl~~~ 200 (450)
T TIGR01302 150 -------TREEVITVPEGIDLEEALKVLHEHRIEKLPVVDK-NGELVGLITMKDIVKRR 200 (450)
T ss_pred -------CCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcC-CCcEEEEEEhHHhhhcc
Confidence 4 37899999999999999999999999999995 79999999999999864
No 99
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.28 E-value=2.8e-11 Score=126.81 Aligned_cols=109 Identities=17% Similarity=0.179 Sum_probs=93.4
Q ss_pred ceeecCCCCHHHHHHHHHHCCCCEEEEEcC---CCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCCCCcc
Q 011043 364 LAMLRPSASLSAALNLLVQAQVSSIPIVDD---NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYE 440 (495)
Q Consensus 364 ~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~---~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~ 440 (495)
.+++.+++++.+|+++|.+++++.+||+|+ +++++|+||..|+.... ...+.++.++|..
T Consensus 107 ~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~--------~~~~~~V~dIMt~--------- 169 (502)
T PRK07107 107 DSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISR--------MSLDTKVKDFMTP--------- 169 (502)
T ss_pred CCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccc--------cCCCCCHHHHhCC---------
Confidence 358999999999999999999999999986 58999999999986421 1224678887621
Q ss_pred ccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHH
Q 011043 441 LRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 492 (495)
Q Consensus 441 ~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~ 492 (495)
.++++++.+++++.+|+++|.++++++|||||+ +++++|+||+.||++.
T Consensus 170 --~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~-~g~LvGIIT~~Dilk~ 218 (502)
T PRK07107 170 --FEKLVTANEGTTLKEANDIIWDHKLNTLPIVDK-NGNLVYLVFRKDYDSH 218 (502)
T ss_pred --CCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEhHHHHhc
Confidence 137889999999999999999999999999994 6899999999999875
No 100
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.27 E-value=5.9e-11 Score=98.36 Aligned_cols=104 Identities=15% Similarity=0.401 Sum_probs=89.3
Q ss_pred CceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCCCCcccc
Q 011043 363 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 442 (495)
Q Consensus 363 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~m 442 (495)
++.++..+.++.++++.|.+.+...+||+|+ ++++|+++..|++... .+.++.+++
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~g~v~~~~l~~~~----------~~~~~~~~~------------- 58 (107)
T cd04610 3 DVITVSPDNTVKDVIKLIKETGHDGFPVVDN-GKVVGIVSARDLLGKD----------PDETVEEIM------------- 58 (107)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhccC----------ccccHHHhC-------------
Confidence 5678899999999999998888889999986 9999999999997521 123566654
Q ss_pred CCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHH
Q 011043 443 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 491 (495)
Q Consensus 443 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~ 491 (495)
..++.++.+++++.++++.|.+++.+++||+++ +|+++|+|+..||++
T Consensus 59 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~g~~~Gvi~~~di~~ 106 (107)
T cd04610 59 SKDLVVAVPEMDIMDAARVMFRTGISKLPVVDE-NNNLVGIITNTDVIR 106 (107)
T ss_pred CCCCeEECCCCCHHHHHHHHHHhCCCeEeEECC-CCeEEEEEEHHHhhc
Confidence 557888999999999999999999999999994 689999999999986
No 101
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.27 E-value=2.2e-11 Score=104.52 Aligned_cols=113 Identities=12% Similarity=0.193 Sum_probs=91.8
Q ss_pred CCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccccCcc
Q 011043 272 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 351 (495)
Q Consensus 272 ~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~ 351 (495)
++++++.+++++.+|++.|.+++++.+||+ ++++ +++|+++..++++.+...... ...++.++
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vv---d~~~---~~~Gii~~~dl~~~~~~~~~~-------~~~~v~~i---- 64 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVV---DESG---KILGMVTLGNLLSSLSSGKVQ-------PSDPVSKA---- 64 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEE---cCCC---CEEEEEEHHHHHHHHHHhccC-------CCCcHHHH----
Confidence 367889999999999999999999999999 3456 799999999998766532111 12345555
Q ss_pred cccccCCCCCCCceeecCCCCHHHHHHHHH---------HCCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 011043 352 WVPKIGEPNRRPLAMLRPSASLSAALNLLV---------QAQVSSIPIVDDNDSLLDIYCRSDITAL 409 (495)
Q Consensus 352 ~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~---------~~~~~~lpVvd~~g~lvGivs~~Dl~~~ 409 (495)
|.+++.++.+++++.++.+++. +.+...+||++++|+++|+||.+|++++
T Consensus 65 --------m~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~ 123 (124)
T cd04608 65 --------LYKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSY 123 (124)
T ss_pred --------hhccceecCCCCCHHHHHhhcccCCceEEEeccccccccccccccceEEEEehhHhhhh
Confidence 8899999999999999999643 3367788899888999999999999874
No 102
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.27 E-value=7.5e-11 Score=98.50 Aligned_cols=109 Identities=23% Similarity=0.443 Sum_probs=91.1
Q ss_pred CceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccccCccc
Q 011043 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 352 (495)
Q Consensus 273 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 352 (495)
+++++.+++++.+|++.|.+.+...+||+ ++++ +++|+++..++++++..... ..++.++
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~---~~~~---~~~G~v~~~~l~~~~~~~~~---------~~~v~~~----- 61 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVV---DGDG---HLVGLLTRDDLIRALAEGGP---------DAPVRGV----- 61 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEE---CCCC---cEEEEeeHHHHHHHHHhcCC---------CCcHHHH-----
Confidence 46788999999999999998899999999 3456 89999999999876643210 1233333
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011043 353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (495)
Q Consensus 353 ~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~ 408 (495)
|..++..+.+++++.++++.|.+++...+||++++|+++|++|.+|+..
T Consensus 62 -------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~ 110 (111)
T cd04639 62 -------MRRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE 110 (111)
T ss_pred -------hcCCCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence 6678889999999999999999999999999998799999999999864
No 103
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.27 E-value=3.3e-11 Score=120.96 Aligned_cols=118 Identities=14% Similarity=0.164 Sum_probs=99.1
Q ss_pred CCcccCCC--ceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccc
Q 011043 266 HGKAFPRP--LVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLP 343 (495)
Q Consensus 266 ~g~~~~~~--~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~ 343 (495)
++++|.++ ++++++++++.+|++.|.+++...+||+ +++| +++|+++..|+.+.+.... ....+
T Consensus 199 V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vv---d~~g---~~iG~vt~~dl~~~~~~~~--------~~~~~ 264 (321)
T PRK11543 199 VHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVC---DAQQ---QVQGVFTDGDLRRWLVGGG--------ALTTP 264 (321)
T ss_pred HHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEE---cCCC---cEEEEecHHHHHHHHhCCC--------CcCCc
Confidence 34578887 9999999999999999999999999999 4567 8999999999987553210 01223
Q ss_pred cccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 011043 344 ICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL 409 (495)
Q Consensus 344 v~~l~i~~~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~ 409 (495)
+.++ |.+++.++.+++++.+|++.|.+++...+||+|++|+++|+||++|++++
T Consensus 265 v~~i------------m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 265 VNEA------------MTRGGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA 318 (321)
T ss_pred HHHh------------cCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence 4444 88889999999999999999999999999999988999999999999864
No 104
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.27 E-value=1.5e-10 Score=97.52 Aligned_cols=111 Identities=24% Similarity=0.449 Sum_probs=93.8
Q ss_pred CCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCCCCc
Q 011043 360 NRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPY 439 (495)
Q Consensus 360 m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~ 439 (495)
|.+.++++.++.++.+|+..|.++++..+||++ .++++|++|.+|+.+......... .++.+++
T Consensus 5 ~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~-~~~l~Giit~~di~~~~~~~~~~~-----~~v~~v~---------- 68 (117)
T COG0517 5 MTKDVITVKPDTSVRDALLLMSENGVSAVPVVD-DGKLVGIITERDILRALAAGGKRL-----LPVKEVM---------- 68 (117)
T ss_pred ccCCCEEECCCCcHHHHHHHHHHcCCCEEEEee-CCEEEEEEEHHHHHHHHhccCCcc-----ccHHHhc----------
Confidence 446789999999999999999999999999997 348999999999998775542210 1455544
Q ss_pred cccCCcceEecCCCCHHHHHHHHHc-CCCcEEEEEeCCCC-eEEEEEehHHHH
Q 011043 440 ELRSQRCQMCLPSDTLHKVMERLAN-PGVRRLVIVEAGSK-RVEGIVSLSDIF 490 (495)
Q Consensus 440 ~~m~~~~~~v~~~~tL~~a~~~m~~-~~~~~l~VVd~~~~-~lvGiIs~~DIl 490 (495)
..++.++.+++++.++++.|.+ ++++++||+++ ++ +++|++|..||+
T Consensus 69 ---~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~-~~~~lvGivt~~di~ 117 (117)
T COG0517 69 ---TKPVVTVDPDTPLEEALELMVERHKIRRLPVVDD-DGGKLVGIITLSDIL 117 (117)
T ss_pred ---cCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEEC-CCCeEEEEEEHHHcC
Confidence 6689999999999999999999 79999999995 55 999999999974
No 105
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.26 E-value=7.7e-11 Score=97.93 Aligned_cols=100 Identities=23% Similarity=0.368 Sum_probs=87.1
Q ss_pred CceeecCCCCHHHHHHHHHHCCCCEEEEEcC---CCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCCCCc
Q 011043 363 PLAMLRPSASLSAALNLLVQAQVSSIPIVDD---NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPY 439 (495)
Q Consensus 363 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~---~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~ 439 (495)
....+.+++++.++.+.|.+.+...+||+|+ +|+++|+++.+|+...... +
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~---------------~----------- 56 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN---------------Y----------- 56 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH---------------h-----------
Confidence 3567899999999999999988889999998 6899999999999865322 2
Q ss_pred cccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHH
Q 011043 440 ELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 492 (495)
Q Consensus 440 ~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~ 492 (495)
|.+++.++.+++++.++++.|.+++.+.+||++ +|+++|+||+.||+++
T Consensus 57 --m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~--~~~~~Gvvt~~dl~~~ 105 (105)
T cd04591 57 --IDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD--EGRLVGIITRKDLLKA 105 (105)
T ss_pred --ccCCCceECCCCcHHHHHHHHHHcCCCEEEEEE--CCeEEEEEEhhhhhcC
Confidence 245688899999999999999999999999997 5899999999999864
No 106
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.26 E-value=7e-11 Score=99.46 Aligned_cols=114 Identities=18% Similarity=0.323 Sum_probs=89.5
Q ss_pred CceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccccCccc
Q 011043 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 352 (495)
Q Consensus 273 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 352 (495)
.++++.+++++.+|++.|.+++++.+||+ ++++ +++|+++..++++++........ ......++.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~---d~~~---~~~Giv~~~dl~~~~~~~~~~~~--~~~~~~~v~~------ 67 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVL---DKEG---KYVGTISLTDILWKLKGLENLDL--ERLVDLKVID------ 67 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeE---CCCC---cEEEEEeHHHHHHHhhccCchhH--HHHhCCcHHH------
Confidence 46789999999999999999999999999 3556 89999999999987653211100 0000123333
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011043 353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (495)
Q Consensus 353 ~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~ 408 (495)
+|.+++.++.+++++.+|++.|.+.+ .+||+|++|+++|++|.+|+++
T Consensus 68 ------~~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~ 115 (116)
T cd04643 68 ------VMNTDVPVIIDDADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILK 115 (116)
T ss_pred ------HhcCCCceecCCCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhc
Confidence 37778899999999999999998754 5999998899999999999875
No 107
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.26 E-value=5.9e-11 Score=125.12 Aligned_cols=114 Identities=22% Similarity=0.380 Sum_probs=99.6
Q ss_pred CCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCC
Q 011043 357 GEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSY 436 (495)
Q Consensus 357 ~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~ 436 (495)
+++|.++++++.+++++.+++++|.+++++++||+|++++++|+|+.+|+..... ...++.+++
T Consensus 90 ~dim~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~~~---------~~~~V~dim------- 153 (486)
T PRK05567 90 ESGVVTDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFETD---------LSQPVSEVM------- 153 (486)
T ss_pred hhcccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhccc---------CCCcHHHHc-------
Confidence 4457788999999999999999999999999999999999999999999964311 124677755
Q ss_pred CCccccC-CcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHh
Q 011043 437 SPYELRS-QRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 493 (495)
Q Consensus 437 ~~~~~m~-~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l 493 (495)
. ++++++.+++++.++++.|.+++++.+||+|+ +|+++|+||..||++.+
T Consensus 154 ------~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe-~g~lvGiIT~~DLl~~~ 204 (486)
T PRK05567 154 ------TKERLVTVPEGTTLEEALELLHEHRIEKLPVVDD-NGRLKGLITVKDIEKAE 204 (486)
T ss_pred ------CCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEEhHHhhhhh
Confidence 4 57899999999999999999999999999994 79999999999999765
No 108
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.25 E-value=1.3e-10 Score=97.89 Aligned_cols=111 Identities=17% Similarity=0.360 Sum_probs=90.7
Q ss_pred CceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccccCccc
Q 011043 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 352 (495)
Q Consensus 273 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 352 (495)
++..+.+++++.+|++.|.+.+.+.+||+ ++++ +++|+++..|+++.+...... ...++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~---d~~~---~~~G~v~~~dl~~~~~~~~~~-------~~~~~~~~----- 63 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVV---DRDG---GVVGIITLPDLLRALEADEAG-------EPSAVDEV----- 63 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEE---cCCC---CEEEEEEHHHHHHHHhccccc-------ccccHHHh-----
Confidence 45678999999999999999999999999 3456 899999999998766432100 01123333
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCC--CcEEEEEeHHHHHH
Q 011043 353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN--DSLLDIYCRSDITA 408 (495)
Q Consensus 353 ~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~--g~lvGivs~~Dl~~ 408 (495)
|..++..+.+++++.+++++|.+++...+||+|++ |+++|+||.+|+++
T Consensus 64 -------~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~ 114 (115)
T cd04593 64 -------ATPPLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL 114 (115)
T ss_pred -------ccCCceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence 66788999999999999999999999999999877 79999999999875
No 109
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.25 E-value=1.4e-10 Score=96.02 Aligned_cols=104 Identities=14% Similarity=0.180 Sum_probs=87.7
Q ss_pred CceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccccCccc
Q 011043 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 352 (495)
Q Consensus 273 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 352 (495)
+++++.+++++.+|++.|.+++.+.+||+ +++| +++|+++..|+++... .++.++
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~---d~~g---~~~Giv~~~dl~~~~~--------------~~~~~~----- 56 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVV---DADG---QPLGFVTRREAARASG--------------GCCGDH----- 56 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEE---CCCC---CEEEEEeHHHHHHhcc--------------cchhhh-----
Confidence 46788999999999999999999999999 3557 8999999999985311 112222
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011043 353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (495)
Q Consensus 353 ~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~ 408 (495)
|.+.+..+.+++++.++++.|.+++...+||+|++|+++|+++.++++.
T Consensus 57 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 57 -------AEPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD 105 (106)
T ss_pred -------cccCCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 6666778999999999999999999999999998899999999999874
No 110
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.25 E-value=5e-11 Score=119.91 Aligned_cols=118 Identities=15% Similarity=0.184 Sum_probs=97.4
Q ss_pred CCcccCC--CceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccc
Q 011043 266 HGKAFPR--PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLP 343 (495)
Q Consensus 266 ~g~~~~~--~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~ 343 (495)
++++|.+ +++++.+++++.+|++.|.+++...+||+ +++| +++|++|..|+.+.+.... .....+
T Consensus 204 V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVv---d~~g---~lvGivt~~Dl~~~~~~~~-------~~~~~~ 270 (326)
T PRK10892 204 VSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVIC---DDNM---KIEGIFTDGDLRRVFDMGI-------DLRQAS 270 (326)
T ss_pred HHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEE---cCCC---cEEEEEecHHHHHHHhcCC-------CcccCC
Confidence 4567887 89999999999999999999998888888 4567 8999999999986443210 111233
Q ss_pred cccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 011043 344 ICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL 409 (495)
Q Consensus 344 v~~l~i~~~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~ 409 (495)
+.++ |.+++.++.+++++.+|++.|.+++++.+||++ +++++|+||++|+++.
T Consensus 271 v~~i------------m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit~~dil~~ 323 (326)
T PRK10892 271 IADV------------MTPGGIRVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLHMHDLLRA 323 (326)
T ss_pred HHHh------------cCCCCEEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEEhHHhHhc
Confidence 4444 888999999999999999999999999999997 6899999999999874
No 111
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.25 E-value=1.1e-10 Score=99.23 Aligned_cols=120 Identities=21% Similarity=0.432 Sum_probs=92.5
Q ss_pred CceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccccCccc
Q 011043 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 352 (495)
Q Consensus 273 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 352 (495)
+++++.+++++.+|++.|.+.+++.+||+ ++++ +++|+++..++++++......... ... ......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~---~~~~---~~~G~v~~~~l~~~~~~~~~~~~~--~~~-~~~~~~----- 67 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVV---NEDG---KLVGLLTQRDLLRAALSSLSDNGE--ESL-TKERDV----- 67 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEE---CCCC---CEEEEEEHHHHHHHhccccccccc--ccc-ccccCc-----
Confidence 56789999999999999999999999999 3456 899999999999876533211000 000 000111
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011043 353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (495)
Q Consensus 353 ~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~ 408 (495)
.+.++|..++..+.+++++.++++.|.+.+...+||+|++|+++|++|..|++.
T Consensus 68 --~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~ 121 (122)
T cd04803 68 --PVAEVMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR 121 (122)
T ss_pred --CHHHhhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence 122337778899999999999999999999999999998899999999999875
No 112
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.24 E-value=9.1e-11 Score=98.42 Aligned_cols=112 Identities=21% Similarity=0.344 Sum_probs=90.9
Q ss_pred CceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccccCccc
Q 011043 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 352 (495)
Q Consensus 273 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 352 (495)
+++.+.+++++.+|++.|.+++.+.+||+ ++++ +++|+++..++++.+....... ....++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~---~~~~---~~~G~v~~~~l~~~~~~~~~~~-----~~~~~v~~~----- 65 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVV---DDNG---NLVGFLSEQDCLKQLLESSYHC-----DGVATVRDI----- 65 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEE---CCCC---eEEEEeehHHHHHHhhhhhhcc-----CCCccHHHH-----
Confidence 46788999999999999999999999999 3556 8999999999998665421110 011233333
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011043 353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (495)
Q Consensus 353 ~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~ 408 (495)
|..++..+.+++++.++++.|.+++...+||+|+ |+++|++|.+|+++
T Consensus 66 -------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 113 (114)
T cd04629 66 -------MTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR 113 (114)
T ss_pred -------hccCceEECCCCcHHHHHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence 6677889999999999999999999999999986 99999999999875
No 113
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.24 E-value=1.1e-10 Score=99.84 Aligned_cols=119 Identities=22% Similarity=0.407 Sum_probs=92.5
Q ss_pred CceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCC----Cccccccccccc
Q 011043 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSS----LPILKLPICAIP 348 (495)
Q Consensus 273 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~----~~~l~~~v~~l~ 348 (495)
+++++.++.++.+|+++|.+.+...+||++ ++++ +++|+++..++++++.......... ......++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d--~~~~---~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~---- 72 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVD--EGTG---KLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPV---- 72 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEe--CCCC---EEEEEEEHHHHHHHhhccchhccccccccchhhhcCH----
Confidence 567889999999999999999999999994 2337 8999999999998765321110000 00011122
Q ss_pred CcccccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011043 349 VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (495)
Q Consensus 349 i~~~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~ 408 (495)
.++|.+++.++.+++++.++++.|.+.+.+.+||+|++|+++|+||..|+++
T Consensus 73 --------~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~ 124 (125)
T cd04631 73 --------RSIMTRNVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK 124 (125)
T ss_pred --------HHHhcCCceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence 2336678999999999999999999999999999998799999999999875
No 114
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.24 E-value=7.6e-11 Score=122.78 Aligned_cols=111 Identities=14% Similarity=0.181 Sum_probs=96.0
Q ss_pred CCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCCC
Q 011043 358 EPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYS 437 (495)
Q Consensus 358 ~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~ 437 (495)
++|.++++++.+++++.+++++|.+++++.+||+| +++++|+||.+|+... . ...++.++|
T Consensus 92 eim~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD-~gklvGIVT~rDL~~~---~-------~~~~V~dIM-------- 152 (475)
T TIGR01303 92 DLVLDTPITLAPHDTVSDAMALIHKRAHGAAVVIL-EDRPVGLVTDSDLLGV---D-------RFTQVRDIM-------- 152 (475)
T ss_pred hccccCCeEECCCCCHHHHHHHHHhcCCeEEEEEE-CCEEEEEEEHHHhhcC---C-------CCCCHHHHc--------
Confidence 33777889999999999999999999999999988 4799999999998432 0 124577755
Q ss_pred CccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHh
Q 011043 438 PYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 493 (495)
Q Consensus 438 ~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l 493 (495)
+++++++.+++++.+|++.|.+++++.+||||+ +++++|+||.+||+++.
T Consensus 153 -----t~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~-~g~LvGIIT~~DLl~~~ 202 (475)
T TIGR01303 153 -----STDLVTAPADTEPRKAFDLLEHAPRDVAPLVDA-DGTLAGILTRTGALRAT 202 (475)
T ss_pred -----cCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHHHH
Confidence 678999999999999999999999999999994 79999999999999864
No 115
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.24 E-value=9.9e-11 Score=98.43 Aligned_cols=109 Identities=14% Similarity=0.276 Sum_probs=87.3
Q ss_pred CceeeCCCCcHHHHHHHHHhCC-CceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccccCcc
Q 011043 273 PLVYAGPNDNLKDVARKILHNE-VATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 351 (495)
Q Consensus 273 ~~i~v~~~~sl~~a~~~m~~~~-i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~ 351 (495)
++.++.+++++.+|++.|.+++ .+.+||+ ++++ +++|+++..|+++...... ...++.++
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~---d~~~---~~~G~v~~~dl~~~~~~~~---------~~~~v~~~---- 62 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVV---DNEG---RYVGIISLADLRAIPTSQW---------AQTTVIQV---- 62 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEE---cCCC---cEEEEEEHHHHHHHHHhhc---------cccchhhh----
Confidence 5678899999999999997775 8999999 3456 7999999999987653211 01223333
Q ss_pred cccccCCCCCC--CceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011043 352 WVPKIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (495)
Q Consensus 352 ~~~~v~~~m~~--~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~ 408 (495)
|.. ++.++.+++++.+|++.|.+++.+.+||+|++|+++|+++.+|+++
T Consensus 63 --------~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 63 --------MTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR 113 (114)
T ss_pred --------hcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence 432 3568899999999999999999999999998899999999999864
No 116
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.24 E-value=1.3e-10 Score=97.17 Aligned_cols=109 Identities=15% Similarity=0.302 Sum_probs=89.9
Q ss_pred CceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccccCccc
Q 011043 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 352 (495)
Q Consensus 273 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 352 (495)
++..+++++++.+|++.|.+++.+.+||+ ++++ +++|+++..|++.+..... ....++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~---d~~~---~~~G~v~~~dl~~~~~~~~--------~~~~~v~~~----- 62 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVK---DNEE---KLKGVVTFTDILDLDLFES--------FLEKKVFNI----- 62 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEE---cCCC---CEEEEEehHHhHHHHhhcc--------cccCcHHHH-----
Confidence 46788999999999999999999999999 3456 8999999999986543210 012234333
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011043 353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (495)
Q Consensus 353 ~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~ 408 (495)
|.+++..+.+++++.++++.|.+++...+||+++ |+++|+||..|++.
T Consensus 63 -------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~ 110 (111)
T cd04626 63 -------VSQDVFYVNEEDTIDEALDIMREKQIGRLPVVDD-NKLIGVVRTKDILD 110 (111)
T ss_pred -------hcCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence 7778889999999999999999999999999987 99999999999863
No 117
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.24 E-value=1.9e-10 Score=95.85 Aligned_cols=108 Identities=23% Similarity=0.422 Sum_probs=90.1
Q ss_pred CceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccccCccc
Q 011043 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 352 (495)
Q Consensus 273 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 352 (495)
+++.+.+++++.+|++.|.+++++.+||++ + + +++|+++..++++....... ..++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~-~---~~~G~v~~~~l~~~~~~~~~---------~~~v~~~----- 60 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVD---D-G---KLVGIVTLSDIAHAIARGLE---------LAKVKDV----- 60 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEee---C-C---EEEEEEEHHHHHHHHhcccc---------ccCHHHH-----
Confidence 567899999999999999999999999993 4 6 89999999999876432110 1233333
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011043 353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (495)
Q Consensus 353 ~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~ 408 (495)
|..++..+.+++++.++++.|.+.+...+||++++|+++|+++..|+++
T Consensus 61 -------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 61 -------MTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILR 109 (110)
T ss_pred -------hcCCceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence 6678899999999999999999999999999998899999999999874
No 118
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.23 E-value=1.9e-10 Score=101.29 Aligned_cols=126 Identities=21% Similarity=0.362 Sum_probs=91.2
Q ss_pred CceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhccc-ccC------cccccCHHHHHHc----
Q 011043 363 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAY-AHI------NLSEMTIHQALQL---- 431 (495)
Q Consensus 363 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~-~~l------~~~~~~v~~~l~~---- 431 (495)
+++++.+++++.++++.|.+.+++.+||+|+ ++++|+++..|+++.+..... ..+ .....++.++++.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDG-GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEETK 80 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeEC-CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHHHH
Confidence 4678999999999999999999999999997 999999999999876543210 000 0000111111000
Q ss_pred ----CCCCCCCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHH
Q 011043 432 ----GQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 491 (495)
Q Consensus 432 ----~~~~~~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~ 491 (495)
........++|..++.++..++++.+++..|.+.+.+++||++ . ++++|+||..|+++
T Consensus 81 ~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~-~~~~Gvvt~~dl~~ 142 (143)
T cd04634 81 RALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVE-D-GRLVGIVTRGDIIE 142 (143)
T ss_pred HHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEE-C-CEEEEEEEHHHhhc
Confidence 0000001124567899999999999999999999999999999 3 89999999999974
No 119
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.23 E-value=1.7e-10 Score=96.33 Aligned_cols=108 Identities=16% Similarity=0.272 Sum_probs=88.9
Q ss_pred CceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCC-CCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccccCcc
Q 011043 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQD-GSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 351 (495)
Q Consensus 273 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~-g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~ 351 (495)
+++++.+++++.+|++.|.+++.+.+||++ ++ + +++|+++..+++++...... ..++..+
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~---~~~~---~~~G~v~~~~l~~~~~~~~~---------~~~~~~~---- 62 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYD---GDLD---NIIGVVHVKDLLRALAEGEE---------DLDLRDL---- 62 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEEC---CCCc---eEEEEEEHHHHHHHHHcCCC---------cCCHHHH----
Confidence 467899999999999999999999999993 34 6 89999999999987643210 0122222
Q ss_pred cccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011043 352 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (495)
Q Consensus 352 ~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~ 408 (495)
+ +++..+.+++++.++++.|.+++.+.+||+|++|+++|++|++|++.
T Consensus 63 --------~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 110 (111)
T cd04590 63 --------L-RPPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE 110 (111)
T ss_pred --------h-cCCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence 3 35788999999999999999999999999998899999999999864
No 120
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.23 E-value=4.4e-10 Score=110.59 Aligned_cols=162 Identities=10% Similarity=0.094 Sum_probs=116.6
Q ss_pred cccCCCCcccCC--CceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCc
Q 011043 261 RQIDSHGKAFPR--PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLP 338 (495)
Q Consensus 261 ~~~~~~g~~~~~--~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~ 338 (495)
.....++++|.+ .++++++++++.++++.+.+++.+++||++ ...+ +++|+++.+|++.++.... .
T Consensus 64 l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~--~~~d---~iiGiv~~kDll~~~~~~~-~------ 131 (292)
T PRK15094 64 IADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVIS--EDKD---HIEGILMAKDLLPFMRSDA-E------ 131 (292)
T ss_pred cCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEec--CCCC---cEEEEEEHHHHHhHhhccC-C------
Confidence 345566788987 699999999999999999999999999994 2324 7999999999986542110 0
Q ss_pred ccccccccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccC
Q 011043 339 ILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHI 418 (495)
Q Consensus 339 ~l~~~v~~l~i~~~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l 418 (495)
...+.++ |.+ +.++.+++++.++++.|.+++.+.+||+|+.|.++|+||..||+..+........
T Consensus 132 --~~~l~~l------------~r~-~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~ivGei~de~ 196 (292)
T PRK15094 132 --AFSMDKV------------LRQ-AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVGEIEDEY 196 (292)
T ss_pred --cCCHHHH------------cCC-CcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHHhCCCcccc
Confidence 1123333 554 4589999999999999999999999999998999999999999987654322111
Q ss_pred cccccCHHHHHHcCCCCCCCccccCCcceEecCCCCHHHHHHHH
Q 011043 419 NLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERL 462 (495)
Q Consensus 419 ~~~~~~v~~~l~~~~~~~~~~~~m~~~~~~v~~~~tL~~a~~~m 462 (495)
+ ..-...+. .....-+.+....+|.++.+.+
T Consensus 197 d---~~~~~~i~----------~~~~~~~~v~G~~~l~dl~~~l 227 (292)
T PRK15094 197 D---EEDDIDFR----------QLSRHTWTVRALASIEDFNEAF 227 (292)
T ss_pred c---cccccccE----------EeCCCeEEEEeccCHHHHHHHh
Confidence 1 00000010 0123456777888888777766
No 121
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.23 E-value=1.9e-10 Score=96.37 Aligned_cols=111 Identities=14% Similarity=0.251 Sum_probs=90.3
Q ss_pred CceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccccCccc
Q 011043 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 352 (495)
Q Consensus 273 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 352 (495)
++..+.+++++.+|++.|.+.+.+.+||++ +++ +++|+++..++++...... .+...++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd---~~~---~~~G~v~~~dl~~~~~~~~-------~~~~~~i~~~----- 63 (113)
T cd04615 2 KPSCVVLNTDIARAVAEMYTSGSRALPVVD---DKK---RLVGIITRYDVLSYALESE-------ELKDAKVREV----- 63 (113)
T ss_pred CCEEeeCCCcHHHHHHHHHHcCCceEeEEc---CCC---CEEEEEEHHHHHHhhhhhh-------hhcCCcHHHh-----
Confidence 356789999999999999999999999993 456 7999999999987543211 0112233333
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011043 353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (495)
Q Consensus 353 ~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~ 408 (495)
|..++.++.+++++.++++.|.+.+...+||+|++|+++|+++..|+++
T Consensus 64 -------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 64 -------MNSPVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR 112 (113)
T ss_pred -------ccCCceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence 6678889999999999999999999999999998899999999999864
No 122
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.23 E-value=2.2e-10 Score=95.14 Aligned_cols=106 Identities=22% Similarity=0.372 Sum_probs=89.2
Q ss_pred CceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccccCccc
Q 011043 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 352 (495)
Q Consensus 273 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 352 (495)
++..+.+++++.+|++.|.+++...+||++ +++ +++|+++..|+++.... ..++.++
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d---~~~---~~~G~v~~~dl~~~~~~------------~~~v~~~----- 59 (109)
T cd04583 3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVD---KDN---KLLGIVSLESLEQAYKE------------AKSLEDI----- 59 (109)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCceEEEEc---CCC---cEEEEEEHHHHHHHhhc------------CCcHhHh-----
Confidence 567789999999999999999999999993 456 89999999999864321 1123333
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011043 353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (495)
Q Consensus 353 ~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~ 408 (495)
|...+..+.+++++.++++.|.+.+...+||++++|+++|++|.+|+++
T Consensus 60 -------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~ 108 (109)
T cd04583 60 -------MLEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD 108 (109)
T ss_pred -------hcCCceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence 6677889999999999999999999999999998899999999999874
No 123
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.23 E-value=7.6e-11 Score=115.24 Aligned_cols=112 Identities=17% Similarity=0.300 Sum_probs=95.0
Q ss_pred ccCCCCCCC-ceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCC
Q 011043 355 KIGEPNRRP-LAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQ 433 (495)
Q Consensus 355 ~v~~~m~~~-~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~ 433 (495)
+++++|.++ +.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+++....+. ..+.++.+++
T Consensus 156 ~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~~~~-----~~~~~v~~im---- 226 (268)
T TIGR00393 156 KVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALLGGG-----SLKSEVRDFM---- 226 (268)
T ss_pred hHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHhcCC-----cccCcHHHhC----
Confidence 455668877 899999999999999999999999999998999999999999987543221 1235677754
Q ss_pred CCCCCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEe
Q 011043 434 DSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVS 485 (495)
Q Consensus 434 ~~~~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs 485 (495)
.+++.++.+++++.+|++.|.+.+..++||+|+ +|+++|+|+
T Consensus 227 ---------~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~l~GvI~ 268 (268)
T TIGR00393 227 ---------TLGPKTFKLDALLLEALEFLERRKITSLVVVDD-HNKVLGVLH 268 (268)
T ss_pred ---------CCCCeEECCCCcHHHHHHHHHHcCCcEEEEECC-CCeEEEEEC
Confidence 667889999999999999999999999999994 689999985
No 124
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.22 E-value=4.1e-10 Score=117.32 Aligned_cols=159 Identities=17% Similarity=0.189 Sum_probs=116.0
Q ss_pred EeeeeeCCCCeEEEEeehHHHHHHHHHHhcCC---CCCChhhHhhhhHHHHHHHHhhhccccCCCCcccCCCceeeCCCC
Q 011043 205 MAPLWDFSKARFVGVLSASDFILILRELGNHG---SNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPND 281 (495)
Q Consensus 205 ~~Pv~d~~~~~~vGilt~~Dii~~l~~~~~~~---~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~ 281 (495)
.+|++.+. .--+|.....-.+..+..-+ .++ ++..|.+..... .+.++|.++++++.+++
T Consensus 43 ~~P~vsa~----mdtvTe~~MAi~~A~~GGigvIh~n~--------~i~~qae~v~~V-----Kv~eim~~~pvtv~p~~ 105 (475)
T TIGR01303 43 TIPLVVAN----MTAVAGRRMAETVARRGGIVILPQDL--------PIPAVKQTVAFV-----KSRDLVLDTPITLAPHD 105 (475)
T ss_pred ccceeecc----chhhHHHHHHHHHHHCCCEEEEeCCC--------CHHHHHHHHhhc-----chhhccccCCeEECCCC
Confidence 46777542 23356666655554443211 122 344444433322 12346788899999999
Q ss_pred cHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccccCcccccccCCCCC
Q 011043 282 NLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNR 361 (495)
Q Consensus 282 sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~~~m~ 361 (495)
++.+|+++|.+++++.+||++ ++ +++|++|.+|+... . ...++.++ |.
T Consensus 106 tI~eA~~lm~~~~~~~~vVvD----~g---klvGIVT~rDL~~~------~-------~~~~V~dI------------Mt 153 (475)
T TIGR01303 106 TVSDAMALIHKRAHGAAVVIL----ED---RPVGLVTDSDLLGV------D-------RFTQVRDI------------MS 153 (475)
T ss_pred CHHHHHHHHHhcCCeEEEEEE----CC---EEEEEEEHHHhhcC------C-------CCCCHHHH------------cc
Confidence 999999999999999999983 35 89999999997411 0 01234444 88
Q ss_pred CCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 011043 362 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 412 (495)
Q Consensus 362 ~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~ 412 (495)
++++++.+++++.+|+++|.++++..+||+|++|+++|+||.+||++....
T Consensus 154 ~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~ 204 (475)
T TIGR01303 154 TDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIY 204 (475)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhC
Confidence 899999999999999999999999999999989999999999999986543
No 125
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.22 E-value=2e-10 Score=96.59 Aligned_cols=110 Identities=22% Similarity=0.361 Sum_probs=87.2
Q ss_pred CceeeCCCCcHHHHHHHHHhCC-CceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccccCcc
Q 011043 273 PLVYAGPNDNLKDVARKILHNE-VATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 351 (495)
Q Consensus 273 ~~i~v~~~~sl~~a~~~m~~~~-i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~ 351 (495)
+++.+.++.++.+|++.|.+++ ...++|. + ++ +++|+++..|+++++..... ....++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~---~-~~---~~~G~v~~~dl~~~~~~~~~-------~~~~~i~~~---- 63 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVV---E-KG---RLLGIFTERDIVRLTAIGKD-------LSDLPIGEV---- 63 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEc---C-CC---cEEEEEeHHHHHHHHhcCCC-------ccccCHHHh----
Confidence 4567899999999999998888 6667777 2 36 89999999999876543110 011233333
Q ss_pred cccccCCCCCCCceeecCC--CCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011043 352 WVPKIGEPNRRPLAMLRPS--ASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (495)
Q Consensus 352 ~~~~v~~~m~~~~~~v~~~--~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~ 408 (495)
|.+++.++.++ +++.++++.|.+++...+||+|++|+++|++|++|+++
T Consensus 64 --------~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~ 114 (115)
T cd04620 64 --------MTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ 114 (115)
T ss_pred --------cCCCcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence 66778888877 68999999999999999999998899999999999875
No 126
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.22 E-value=9.5e-11 Score=101.87 Aligned_cols=128 Identities=20% Similarity=0.366 Sum_probs=92.4
Q ss_pred CCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccc--cccccc--
Q 011043 272 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILK--LPICAI-- 347 (495)
Q Consensus 272 ~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~--~~v~~l-- 347 (495)
+++.++.+++++.+|++.|.+++.+.+||+ ++++ +++|+++..+++++....+..... .++. ......
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv---d~~~---~~~Gvi~~~dl~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 73 (135)
T cd04586 2 TDVVTVSPETSVAEAARLMLDNHISGLPVV---DDDG---RLVGIVSEGDLLRRAELGTERRRA--RWLDLLAGAEELAA 73 (135)
T ss_pred CCCEEeCCCCCHHHHHHHHHHcCCCCceEE---CCCC---CEEEEeeHHHHHHHhcccCcchhh--hHHHHhcchHHHHH
Confidence 467889999999999999999999999999 3556 899999999998765432110000 0000 000000
Q ss_pred c-CcccccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011043 348 P-VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (495)
Q Consensus 348 ~-i~~~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~ 408 (495)
. .......+.++|.+++..+.+++++.++++.|.+.+.+.+||+| +|+++|++|++|+++
T Consensus 74 ~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~ 134 (135)
T cd04586 74 AFVRSHGRKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR 134 (135)
T ss_pred HHHHhcCCCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence 0 00000123334777889999999999999999999999999999 899999999999875
No 127
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.22 E-value=2.4e-10 Score=95.23 Aligned_cols=109 Identities=20% Similarity=0.401 Sum_probs=90.3
Q ss_pred CceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccccCccc
Q 011043 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 352 (495)
Q Consensus 273 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 352 (495)
++..+.+++++.+|++.|.+++.+.+||++ + + +++|+++..+++++...... ...++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~---~-~---~~~G~v~~~~l~~~~~~~~~--------~~~~v~~~----- 61 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVD---D-G---RPLGIVTERDILRLLASGPD--------LQTPVGEV----- 61 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEee---C-C---EEEEEEeHHHHHHHHhcCCC--------CCcCHHHh-----
Confidence 467889999999999999998999999993 3 6 89999999999876643210 12233333
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011043 353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (495)
Q Consensus 353 ~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~ 408 (495)
|.+++..+.+++++.++++.|.+.+...+||+|++|+++|+++.+|+++
T Consensus 62 -------~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 62 -------MSSPLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110 (111)
T ss_pred -------cCCCceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence 6678889999999999999999999999999998899999999999874
No 128
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=99.22 E-value=1.1e-10 Score=119.78 Aligned_cols=162 Identities=16% Similarity=0.251 Sum_probs=129.4
Q ss_pred EEeehHHHHHHHHHHhcCCCCCChhhHhhhhHHHHHHHHhhhccccCCCCcccCCCceeeCCCCcHHHHHHHHHh-----
Q 011043 218 GVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILH----- 292 (495)
Q Consensus 218 Gilt~~Dii~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~~a~~~m~~----- 292 (495)
.=++..|.+.++..+ +.+...+.+..+.-..........+|+++.+|++|...++++.++.|+.+|+..+.+
T Consensus 89 e~m~~Dd~~~ll~el---p~~~~~~lL~~l~~~~r~~v~~~l~y~e~taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~ 165 (451)
T COG2239 89 EELDIDDAADLLDEL---PDEVRDELLSLLDPEERARVRQLLSYPEDTAGRIMTTEFVTLPEDVTVDEALDRIRERAEDA 165 (451)
T ss_pred HhcCcHHHHHHHHhC---CHHHHHHHHHhCCHHHHHHHHHhcCCChhhhhccceeeeEEeccCcCHHHHHHHHHHhcccc
Confidence 335556666666543 233344556666666666677778899999999999999999999999999999984
Q ss_pred CCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccccCcccccccCCCCCCCceeecCCCC
Q 011043 293 NEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSAS 372 (495)
Q Consensus 293 ~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~~~m~~~~~~v~~~~s 372 (495)
..+..+.|+ +.++ +++|+++.++++.. .-..+++++ |.+.++++.+++.
T Consensus 166 e~~~~lyVv---D~~~---~L~Gvvsl~~Ll~a-------------~~~~~i~~i------------m~~~~~~V~~~~d 214 (451)
T COG2239 166 ETIYYLYVV---DEKG---KLLGVVSLRDLLTA-------------EPDELLKDL------------MEDDVVSVLADDD 214 (451)
T ss_pred cccceEEEE---CCcc---ceEEEeeHHHHhcC-------------CcHhHHHHH------------hcccceeecccCC
Confidence 357888999 4666 89999999998731 113445555 8888999999999
Q ss_pred HHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhc
Q 011043 373 LSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK 413 (495)
Q Consensus 373 l~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~ 413 (495)
..++.+.+.+++.-++||||++++++|++|..|++..+...
T Consensus 215 qeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi~eE 255 (451)
T COG2239 215 QEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVIEEE 255 (451)
T ss_pred HHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHHHHH
Confidence 99999999999999999999999999999999999877544
No 129
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.22 E-value=1.6e-10 Score=96.23 Aligned_cols=105 Identities=18% Similarity=0.311 Sum_probs=89.5
Q ss_pred CceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccccCccc
Q 011043 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 352 (495)
Q Consensus 273 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 352 (495)
++.++.+++++.+|++.|.+++.+.+||+ ++++ +++|+++..+++... ...++.++
T Consensus 3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~---d~~~---~~~G~v~~~~l~~~~-------------~~~~v~~~----- 58 (108)
T cd04596 3 DTGYLTTTDTVKDWHELNKETGHSRFPVV---DEKN---KVVGIVTSKDVAGKD-------------PDTTIEKV----- 58 (108)
T ss_pred ccEEeCCCCCHHHHHHHHHHcCCCceeEE---CCCC---eEEEEecHHHHhccc-------------ccccHHHH-----
Confidence 57889999999999999999999999999 3567 899999999986421 01234443
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011043 353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (495)
Q Consensus 353 ~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~ 408 (495)
|..++.++.+++++.++++.|.+++...+||+|++|+++|++|..|+++
T Consensus 59 -------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~ 107 (108)
T cd04596 59 -------MTKNPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK 107 (108)
T ss_pred -------hcCCCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence 6667889999999999999999999999999998999999999999874
No 130
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.22 E-value=2.1e-10 Score=97.10 Aligned_cols=113 Identities=15% Similarity=0.261 Sum_probs=88.5
Q ss_pred CceeecCCCCHHHHHHHHHHCC-CCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCCCCccc
Q 011043 363 PLAMLRPSASLSAALNLLVQAQ-VSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL 441 (495)
Q Consensus 363 ~~~~v~~~~sl~~a~~~m~~~~-~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~ 441 (495)
++.++.+++++.++++.|...+ .+.+||+|+ |+++|+++..|+..+......... ..+.++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~~l~~~~~~~~~~~~-~~~~~v~~~~------------ 67 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD-GRPVGLIMREALMELLSTPYGRAL-YGKKPVSEVM------------ 67 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC-CeeEEEEEHHHHHHHHhchhhHHH-HcCCcHHHhc------------
Confidence 4567889999999999998776 889999998 999999999999875432100000 1124556544
Q ss_pred cCCcceEecCCCCHHHHHHHHHcCCCc---EEEEEeCCCCeEEEEEehHHHHH
Q 011043 442 RSQRCQMCLPSDTLHKVMERLANPGVR---RLVIVEAGSKRVEGIVSLSDIFK 491 (495)
Q Consensus 442 m~~~~~~v~~~~tL~~a~~~m~~~~~~---~l~VVd~~~~~lvGiIs~~DIl~ 491 (495)
..++.++.+++++.++++.|.+.+.. ..+||++ +|+++|+||..|+++
T Consensus 68 -~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~-~~~~~Gvvs~~di~~ 118 (119)
T cd04598 68 -DPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTE-EGRYLGIGTVKDLLR 118 (119)
T ss_pred -CCCcEEecCCCCHHHHHHHHHcCCcccccccEEEee-CCeEEEEEEHHHHhc
Confidence 66789999999999999999998864 3468874 699999999999975
No 131
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.22 E-value=2.4e-10 Score=95.31 Aligned_cols=108 Identities=19% Similarity=0.389 Sum_probs=90.4
Q ss_pred CCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccccCcc
Q 011043 272 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 351 (495)
Q Consensus 272 ~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~ 351 (495)
++++++.+++++.+|++.|.+++...+||++ + + +++|+++..++++.+.... ...++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d---~-~---~~~G~v~~~dl~~~~~~~~---------~~~~~~~~---- 61 (110)
T cd04595 2 SPVKTVRPEATIEEARELLLRYGHTALPVVE---G-G---RVVGIISRRDVEKALRHGL---------GHAPVKDY---- 61 (110)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCeeeEee---C-C---EEEEEEEHHHHHHHHhccc---------ccCcHHHH----
Confidence 3678899999999999999989999999993 3 6 8999999999987553211 12334443
Q ss_pred cccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011043 352 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (495)
Q Consensus 352 ~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~ 408 (495)
|.+++..+.+++++.+++++|.+.+...+||++ +|+++|++|..|+++
T Consensus 62 --------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~ 109 (110)
T cd04595 62 --------MSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR 109 (110)
T ss_pred --------hcCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence 777889999999999999999999999999998 889999999999874
No 132
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.21 E-value=2.4e-10 Score=95.78 Aligned_cols=111 Identities=22% Similarity=0.418 Sum_probs=91.6
Q ss_pred CceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccccCccc
Q 011043 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 352 (495)
Q Consensus 273 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 352 (495)
++.++.+++++.++++.|.+.+.+.+||+ ++++ +++|+++..++++.+...... ...++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~---d~~~---~~~G~v~~~~i~~~~~~~~~~-------~~~~v~~~----- 64 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVV---DEDG---RLVGIFTDGDLRRALEKGLDI-------LTLPVADV----- 64 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEE---cCCC---CEEEEechHHHHHHHhccCcc-------ccCCHHHh-----
Confidence 45678999999999999988889999999 3456 899999999999876543211 01233333
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011043 353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (495)
Q Consensus 353 ~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~ 408 (495)
|.+++.++.+++++.++++.|...+...+||++++++++|+++..||++
T Consensus 65 -------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~ 113 (114)
T cd04604 65 -------MTRNPKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLR 113 (114)
T ss_pred -------hccCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence 7777889999999999999999999999999998899999999999875
No 133
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.21 E-value=2.5e-10 Score=96.73 Aligned_cols=120 Identities=19% Similarity=0.294 Sum_probs=92.1
Q ss_pred CceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccccCccc
Q 011043 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 352 (495)
Q Consensus 273 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 352 (495)
++.++.+++++.+|++.|.+.+...+||++ + + +++|+++..+++++.......... .+...+..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d---~-~---~~~G~i~~~~l~~~~~~~~~~~~~---------~~~~~~~~ 65 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVD---R-G---KLVGIVTDRDLKLASPSKATTLDI---------WELYYLLS 65 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEec---C-C---eEEEEEeHHHHHHhhhcccccccc---------hhhhhhhc
Confidence 467889999999999999999999999993 3 6 899999999999866432111000 00000000
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011043 353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (495)
Q Consensus 353 ~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~ 408 (495)
...+.++|.+++.++.+++++.++++.|.+.+.+.+||++++|+++|+||..|+++
T Consensus 66 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~ 121 (122)
T cd04585 66 KIKVSDIMTRDPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR 121 (122)
T ss_pred ccCHHHhccCCCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence 11233447778999999999999999999999999999998899999999999875
No 134
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.21 E-value=2e-10 Score=99.41 Aligned_cols=128 Identities=16% Similarity=0.311 Sum_probs=91.9
Q ss_pred CceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCccccccc--ccccCc
Q 011043 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPI--CAIPVG 350 (495)
Q Consensus 273 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v--~~l~i~ 350 (495)
+++++.+++++.+|++.|.+++++.+||+ ++++ +++|+++..++++++......... ........ .+....
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~---d~~~---~~~G~i~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 74 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVV---DNEG---RVVGIVSEGDLIRKIYKGKGLFYV-TLLYSVIFLDESKIKK 74 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceE---CCCC---CEEEEEeHHHHHHHHhccCCcccc-cccccccccchHHHHH
Confidence 56789999999999999999999999999 3456 899999999999877543211000 00000000 000000
Q ss_pred ccccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011043 351 TWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (495)
Q Consensus 351 ~~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~ 408 (495)
.....+.++|.+++..+.+++++.+++++|.+.+.+.+||+|+ |+++|++|.+|+++
T Consensus 75 ~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~ 131 (132)
T cd04636 75 LLGKKVEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIR 131 (132)
T ss_pred HcCCCHHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhc
Confidence 0000233447778899999999999999999999999999997 99999999999875
No 135
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.21 E-value=3.4e-10 Score=93.82 Aligned_cols=104 Identities=21% Similarity=0.411 Sum_probs=87.9
Q ss_pred CceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCCCCcccc
Q 011043 363 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 442 (495)
Q Consensus 363 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~m 442 (495)
++.++..+.++.++++.|.+.+.+.+||++++++++|+++..++..... +.++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~~~~----------~~~~~~~~------------- 58 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRNPE----------EEQLALLM------------- 58 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhccc----------cchHHHHh-------------
Confidence 3567888899999999999888999999998899999999999975211 12344443
Q ss_pred CCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHH
Q 011043 443 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 491 (495)
Q Consensus 443 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~ 491 (495)
..++.++..++++.++++.|.+.+.+.+||+| +|+++|+||..|+++
T Consensus 59 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd--~~~~~G~it~~d~~~ 105 (106)
T cd04638 59 TRDPPTVSPDDDVKEAAKLMVENNIRRVPVVD--DGKLVGIVTVADIVR 105 (106)
T ss_pred cCCCceECCCCCHHHHHHHHHHcCCCEEEEEE--CCEEEEEEEHHHhhc
Confidence 55788899999999999999999999999999 379999999999975
No 136
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.21 E-value=1.3e-10 Score=121.98 Aligned_cols=111 Identities=23% Similarity=0.233 Sum_probs=96.4
Q ss_pred CCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCC---CcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCC
Q 011043 360 NRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN---DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSY 436 (495)
Q Consensus 360 m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~---g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~ 436 (495)
|..+++++.+++++.+++++|.+++++.+||+|++ ++++|+++.+|+.... . .+.++.++|
T Consensus 102 ~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~-~--------~~~~V~diM------- 165 (495)
T PTZ00314 102 FIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVK-D--------KSTPVSEVM------- 165 (495)
T ss_pred cccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhcc-c--------CCCCHHHhh-------
Confidence 56678899999999999999999999999999863 7999999999997321 1 135788866
Q ss_pred CCccccCC--cceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHh
Q 011043 437 SPYELRSQ--RCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 493 (495)
Q Consensus 437 ~~~~~m~~--~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l 493 (495)
++ ++.++.+++++.+|+++|.+++.+.+||||+ +++++|+||++||++..
T Consensus 166 ------t~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~-~g~liGIIT~~DIl~~~ 217 (495)
T PTZ00314 166 ------TPREKLVVGNTPISLEEANEVLRESRKGKLPIVND-NGELVALVSRSDLKKNR 217 (495)
T ss_pred ------CCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcC-CCcEEEEEEehHhhhcc
Confidence 44 7899999999999999999999999999995 79999999999999763
No 137
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.21 E-value=1.1e-10 Score=122.03 Aligned_cols=116 Identities=13% Similarity=0.226 Sum_probs=98.8
Q ss_pred ccCCCCCCCceeecCCCCHHHHHHHHHH-----CCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHH
Q 011043 355 KIGEPNRRPLAMLRPSASLSAALNLLVQ-----AQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQAL 429 (495)
Q Consensus 355 ~v~~~m~~~~~~v~~~~sl~~a~~~m~~-----~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l 429 (495)
+++++|.+++.++.++.++.++++.|.+ +....++|+|++++++|+++.+|++.. . .+.++.+++
T Consensus 132 tvg~iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~a--~--------~~~~v~~im 201 (449)
T TIGR00400 132 SAGRIMTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLILA--K--------PEEILSSIM 201 (449)
T ss_pred hHHHhCcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHhcC--C--------CCCcHHHHh
Confidence 3455599999999999999999999975 456789999989999999999998752 1 134677755
Q ss_pred HcCCCCCCCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHhh
Q 011043 430 QLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 494 (495)
Q Consensus 430 ~~~~~~~~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l~ 494 (495)
.+++.++.+++++.+|++.|.+++...+||||+ +|+++|+||..|+++.+.
T Consensus 202 -------------~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~-~g~lvGiIt~~Dil~~l~ 252 (449)
T TIGR00400 202 -------------RSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDN-EGRLVGIVTVDDIIDVIQ 252 (449)
T ss_pred -------------CCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcC-CCeEEEEEEHHHHHHHHH
Confidence 567889999999999999999999999999994 799999999999998764
No 138
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.21 E-value=2.3e-10 Score=99.67 Aligned_cols=129 Identities=15% Similarity=0.217 Sum_probs=92.3
Q ss_pred CceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccC-CCCCccc---cccccccc
Q 011043 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHC-SSSLPIL---KLPICAIP 348 (495)
Q Consensus 273 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~-~~~~~~l---~~~v~~l~ 348 (495)
+++++.+++++.+|++.|.+++.+.+||+ ++++ +++|+++..++++++....... ....-.+ ..+-....
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~---d~~~---~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVV---DDNG---KPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRY 75 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEE---CCCC---CEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccc
Confidence 45678999999999999999999999999 3556 8999999999998764221110 0000000 00000000
Q ss_pred CcccccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011043 349 VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (495)
Q Consensus 349 i~~~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~ 408 (495)
.......+.++|.+++..+.+++++.++++.|.+.+.+.+||+++ |+++|+||.+|+++
T Consensus 76 ~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~ 134 (135)
T cd04621 76 VKEVPLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR 134 (135)
T ss_pred cccccccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence 000111244558788899999999999999999999999999986 99999999999875
No 139
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.21 E-value=2.8e-10 Score=95.25 Aligned_cols=111 Identities=15% Similarity=0.199 Sum_probs=90.2
Q ss_pred CceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccccCccc
Q 011043 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 352 (495)
Q Consensus 273 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 352 (495)
+++.+.+++++.++++.|.+++.+.+||++ + + +++|+++..++++.+...... ....++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~---~-~---~~~G~v~~~dl~~~~~~~~~~------~~~~~v~~i----- 63 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMD---G-N---KLVGIFTSKDIALRVVAQGLD------PESTLVERV----- 63 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEE---C-C---EEEEEEEhHHHHHHHHhcCCC------cCcCCHHHh-----
Confidence 467889999999999999999999999993 3 6 899999999998654422100 001234443
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011043 353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (495)
Q Consensus 353 ~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~ 408 (495)
|.+++.++.+++++.++++.|.+++..++||++++++++|++|.+|++.
T Consensus 64 -------~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 64 -------MTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH 112 (113)
T ss_pred -------cCCCCeEEcCCCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence 7778889999999999999999999999999998899999999999864
No 140
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.20 E-value=8e-11 Score=113.03 Aligned_cols=115 Identities=17% Similarity=0.294 Sum_probs=101.5
Q ss_pred ccCCCCC--CCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcC
Q 011043 355 KIGEPNR--RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLG 432 (495)
Q Consensus 355 ~v~~~m~--~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~ 432 (495)
.++++|. ....++.+++++.+..++..+.+.+++||+|...+++|++|.+|+.... .+.++..+|
T Consensus 189 ~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~~~~----------~~t~ieKVM--- 255 (432)
T COG4109 189 TVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDKK----------PSTTIEKVM--- 255 (432)
T ss_pred eHHHhccccccceeccccccHHHHHHHHHHcCCCccceecccceEEEEEEehhhhcCC----------CCccHHHHh---
Confidence 3455566 5677899999999999999999999999999999999999999998732 135677654
Q ss_pred CCCCCCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHh
Q 011043 433 QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 493 (495)
Q Consensus 433 ~~~~~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l 493 (495)
+++++++.+.+++..+.++|.-.++.-+||+|+ +.+++|+||++|+++.|
T Consensus 256 ----------tknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~-n~~llGiitR~dvlk~l 305 (432)
T COG4109 256 ----------TKNPITVRAKTSVASVAQMMIWEGIEMLPVVDS-NNTLLGIITRQDVLKSL 305 (432)
T ss_pred ----------ccCCeeecccchHHHHHHHHHhccceeeeEEcC-CceEEEEEEHHHHHHHH
Confidence 889999999999999999999999999999995 89999999999999987
No 141
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.20 E-value=3.2e-10 Score=95.44 Aligned_cols=112 Identities=27% Similarity=0.512 Sum_probs=94.2
Q ss_pred ccCCCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCccccccccccc
Q 011043 269 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIP 348 (495)
Q Consensus 269 ~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ 348 (495)
.|.+.++++.++.++.+|+..|.++++..+||++ .. +++|++|..|+++.+....... .++.+
T Consensus 4 ~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~----~~---~l~Giit~~di~~~~~~~~~~~--------~~v~~-- 66 (117)
T COG0517 4 IMTKDVITVKPDTSVRDALLLMSENGVSAVPVVD----DG---KLVGIITERDILRALAAGGKRL--------LPVKE-- 66 (117)
T ss_pred cccCCCEEECCCCcHHHHHHHHHHcCCCEEEEee----CC---EEEEEEEHHHHHHHHhccCCcc--------ccHHH--
Confidence 3557899999999999999999999999999993 22 6999999999998876543221 02333
Q ss_pred CcccccccCCCCCCCceeecCCCCHHHHHHHHHH-CCCCEEEEEcCCC-cEEEEEeHHHHH
Q 011043 349 VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQ-AQVSSIPIVDDND-SLLDIYCRSDIT 407 (495)
Q Consensus 349 i~~~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~-~~~~~lpVvd~~g-~lvGivs~~Dl~ 407 (495)
+|..++.++.++.++.++++.|.+ ++++.+||+++++ +++|++|..|++
T Consensus 67 ----------v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~ 117 (117)
T COG0517 67 ----------VMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL 117 (117)
T ss_pred ----------hccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence 377789999999999999999999 7999999999886 999999999973
No 142
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.20 E-value=2.5e-10 Score=95.32 Aligned_cols=109 Identities=21% Similarity=0.400 Sum_probs=89.6
Q ss_pred CceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccccCccc
Q 011043 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 352 (495)
Q Consensus 273 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 352 (495)
++.++.+++++.+|++.|.+++.+.+||++ + + +++|+++..++++.+.... . ....++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~---~-~---~~~G~v~~~~l~~~~~~~~-~------~~~~~i~~~----- 62 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVD---D-G---RLVGIVTDRDLRNRVVAEG-L------DPDTPVSEV----- 62 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEE---C-C---EEEEEEEhHHHHHHHhccC-C------CccCCHHHH-----
Confidence 567889999999999999999999999993 3 6 8999999999987544210 0 011233333
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011043 353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (495)
Q Consensus 353 ~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~ 408 (495)
|..++..+.+++++.++++.|.+.+.+++||+++ |+++|++|.+|+++
T Consensus 63 -------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~ 110 (111)
T cd04800 63 -------MTAPPITIPPDATVFEALLLMLERGIHHLPVVDD-GRLVGVISATDLLR 110 (111)
T ss_pred -------hCCCCeEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence 6678899999999999999999999999999986 99999999999875
No 143
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.19 E-value=2e-10 Score=97.48 Aligned_cols=119 Identities=23% Similarity=0.477 Sum_probs=91.5
Q ss_pred CceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccccCccc
Q 011043 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 352 (495)
Q Consensus 273 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 352 (495)
+++++.+++++.+|++.|.+++.+.+||++ + + +++|+++..++++++......... .....+....
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~---~-~---~~~G~v~~~~l~~~~~~~~~~~~~--~~~~~~~~~~----- 67 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIE---G-G---KLVGIVTEKDIADALRSFRPLVRD--RHQERRIRNL----- 67 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEE---C-C---EEEEEEchHHHHHhhhhhhhcccc--hhhhhhhhcc-----
Confidence 567899999999999999999999999993 3 6 899999999998876532211000 0000111111
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011043 353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (495)
Q Consensus 353 ~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~ 408 (495)
.+.++|..++..+.+++++.+++++|.+.+.+.+||+|+ |+++|+++.+|+++
T Consensus 68 --~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~ 120 (121)
T cd04633 68 --PVSDIMTRPVITIEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILR 120 (121)
T ss_pred --CHHHHccCCceEECCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhc
Confidence 122336778899999999999999999999999999987 99999999999875
No 144
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.19 E-value=3e-10 Score=95.06 Aligned_cols=111 Identities=26% Similarity=0.388 Sum_probs=91.1
Q ss_pred CceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccccCccc
Q 011043 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 352 (495)
Q Consensus 273 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 352 (495)
++.++.+++++.++++.|.+.+++.+||++ +++ +++|+++..++++++..... .-..++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~~---~~~G~v~~~~l~~~~~~~~~-------~~~~~v~~~----- 63 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVD---DDG---RLVGIVSLDDIREILFDPSL-------YDLVVASDI----- 63 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEEC---CCC---CEEEEEEHHHHHHHHhcccc-------cccEEHHHh-----
Confidence 467899999999999999999999999993 446 89999999999876532110 001233333
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcC-CCcEEEEEeHHHHHH
Q 011043 353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDD-NDSLLDIYCRSDITA 408 (495)
Q Consensus 353 ~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~-~g~lvGivs~~Dl~~ 408 (495)
|.+++.++.+++++.++++.|...+...+||+|+ .++++|+++..|++.
T Consensus 64 -------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 64 -------MTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred -------ccCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 7778899999999999999999999999999987 799999999999874
No 145
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.19 E-value=4.2e-10 Score=93.77 Aligned_cols=109 Identities=20% Similarity=0.339 Sum_probs=89.8
Q ss_pred CceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccccCccc
Q 011043 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 352 (495)
Q Consensus 273 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 352 (495)
+++.+.+++++.+|++.|.+.+.+.+||++ + + +++|+++..|+++........ ..++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~-~---~~~G~v~~~dl~~~~~~~~~~--------~~~~~------- 59 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVD---D-G---RLVGIVTLADIRRVPAEGREA--------TVLVG------- 59 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEee---C-C---eEEEEEEHHHHHHHHhcCccc--------ccCHH-------
Confidence 567899999999999999999999999993 3 6 899999999998755321100 01222
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011043 353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (495)
Q Consensus 353 ~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~ 408 (495)
+.|.+++..+.+++++.++++.|.+++.+.+||+|++|+++|++|..|+++
T Consensus 60 -----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 110 (111)
T cd04612 60 -----DVMTRDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR 110 (111)
T ss_pred -----HhccCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence 226778899999999999999999999999999998899999999999875
No 146
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.18 E-value=4.5e-10 Score=93.89 Aligned_cols=110 Identities=15% Similarity=0.351 Sum_probs=88.1
Q ss_pred CceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccccCccc
Q 011043 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 352 (495)
Q Consensus 273 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 352 (495)
.+..+.+++++.+|++.|.+++.+.++|. + ++ +++|+++..|+++++...... ....++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~---~-~~---~~~G~v~~~dl~~~~~~~~~~------~~~~~v~~~----- 63 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVM---E-RG---ELVGLLTFREVLQAMAQHGAG------VLDTTVRAI----- 63 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEe---e-CC---EEEEEEEHHHHHHHHHhcCCc------hhcCCHHHH-----
Confidence 35678999999999999988888777776 2 36 899999999999876532100 011234433
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011043 353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (495)
Q Consensus 353 ~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~ 408 (495)
|..++.++.+++++.++++.|.+++...+||++ +|+++|++|.+|+++
T Consensus 64 -------~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~ 111 (112)
T cd04625 64 -------MNPEPIVASPDDSIDEVRRLMVERHLRYLPVLD-GGTLLGVISFHDVAK 111 (112)
T ss_pred -------hCCCCeEECCCCCHHHHHHHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence 777788999999999999999999999999998 589999999999875
No 147
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.18 E-value=3.5e-10 Score=96.18 Aligned_cols=120 Identities=18% Similarity=0.307 Sum_probs=92.4
Q ss_pred CceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccccCccc
Q 011043 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 352 (495)
Q Consensus 273 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 352 (495)
+++++.+++++.+|++.|.+++++.+||++ + + +++|+++..++.+.+........ ....+. ..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d---~-~---~~~G~v~~~~l~~~~~~~~~~~~-------~~~~~~--~~~ 65 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVE---D-N---ELVGVISDRDYLKAISPFLGTAG-------ETEKDL--ATL 65 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEe---C-C---eEEEEEEHHHHHHHHHHHhcccc-------chHHHH--HHH
Confidence 467899999999999999999999999993 3 6 89999999999887654321100 000000 000
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011043 353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (495)
Q Consensus 353 ~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~ 408 (495)
...+.++|..++..+.+++++.++++.|.+++...+||+|++++++|+++..|+++
T Consensus 66 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~ 121 (122)
T cd04637 66 NRRAHQIMTRDPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK 121 (122)
T ss_pred HhHHHHhhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence 11223347778999999999999999999999999999998899999999999875
No 148
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.17 E-value=4.8e-10 Score=93.83 Aligned_cols=110 Identities=21% Similarity=0.365 Sum_probs=88.9
Q ss_pred CceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHH-HHHhhhccCCCCCcccccccccccCcc
Q 011043 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK-CVCRYFRHCSSSLPILKLPICAIPVGT 351 (495)
Q Consensus 273 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~-~l~~~~~~~~~~~~~l~~~v~~l~i~~ 351 (495)
+++++.+++++.+|++.|.+++.+.+||++ + + +++|+++..+++. .+..... ....++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~---~-~---~~~G~i~~~~l~~~~~~~~~~-------~~~~~~~~~---- 63 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCE---N-D---RLVGIVTDRDIVVRAVAEGRD-------PDTTTVGDV---- 63 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEee---C-C---EEEEEEEhHHHHHHHhhccCC-------cccCCHHHh----
Confidence 567899999999999999999999999993 3 6 8999999999873 2221100 001123333
Q ss_pred cccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011043 352 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (495)
Q Consensus 352 ~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~ 408 (495)
|...+.++.+++++.++++.|.+.+..++||++++|+++|+++..|+++
T Consensus 64 --------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 112 (113)
T cd04622 64 --------MTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR 112 (113)
T ss_pred --------ccCCccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 7778889999999999999999999999999998899999999999875
No 149
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.17 E-value=4.3e-10 Score=96.66 Aligned_cols=118 Identities=18% Similarity=0.362 Sum_probs=90.5
Q ss_pred CceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhc-cCCCC-----Cccccccccc
Q 011043 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFR-HCSSS-----LPILKLPICA 346 (495)
Q Consensus 273 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~-~~~~~-----~~~l~~~v~~ 346 (495)
+++.+.+++++.+|+++|.+.+++.+||+ ++++ +++|++|..++++.+..... ..... ......++
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv---~~~~---~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 73 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVV---DDNG---KLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPV-- 73 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEE---CCCC---cEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcH--
Confidence 46788999999999999999999999999 3456 89999999999876532210 00000 00011222
Q ss_pred ccCcccccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEc--CCCcEEEEEeHHHHHH
Q 011043 347 IPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVD--DNDSLLDIYCRSDITA 408 (495)
Q Consensus 347 l~i~~~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd--~~g~lvGivs~~Dl~~ 408 (495)
.++|..+++++.+++++.++++.|.+.+...+||++ ++|+++|+||.+|+++
T Consensus 74 ----------~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 74 ----------YDAMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred ----------HHHhcCCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence 334777899999999999999999999999999984 4689999999999874
No 150
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.17 E-value=5.3e-10 Score=94.04 Aligned_cols=109 Identities=19% Similarity=0.325 Sum_probs=86.6
Q ss_pred CceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccccCccc
Q 011043 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 352 (495)
Q Consensus 273 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 352 (495)
+++.+.+++++.+|++.|.+++...+||++..+.++ +++|+++..|++... . . ..++.++
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~---~~~G~v~~~dl~~~~-~---~--------~~~v~~~----- 62 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGG---KLLGIVTSRDIDFLT-D---S--------ETPLSEV----- 62 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCC---EEEEEEEhHHhhhhh-c---c--------CCCHHHh-----
Confidence 467889999999999999999999999994211257 899999999986321 0 0 1223333
Q ss_pred ccccCCCCCCCceeecC--CCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011043 353 VPKIGEPNRRPLAMLRP--SASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (495)
Q Consensus 353 ~~~v~~~m~~~~~~v~~--~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~ 408 (495)
|......+.. ++++.++++.|.+++...+||+|++|+++|+||.+|+++
T Consensus 63 -------~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~ 113 (114)
T cd04602 63 -------MTPREVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK 113 (114)
T ss_pred -------cCCCceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence 6666666755 999999999999999999999998899999999999874
No 151
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.16 E-value=1.7e-10 Score=117.49 Aligned_cols=119 Identities=20% Similarity=0.324 Sum_probs=103.0
Q ss_pred CcccCCCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCccccccccc
Q 011043 267 GKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICA 346 (495)
Q Consensus 267 g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~ 346 (495)
++.+..+++++.+..++.+|+..|.++|++.+.+++ .++ ..+||+|.+|+.+.+....+. ..+++++
T Consensus 152 ~~~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~---~~~---~~~GIvT~~dl~~~v~~~g~~-------~~~~V~e 218 (610)
T COG2905 152 GEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLD---DSG---PLLGIVTRKDLRSRVIADGRS-------KTQKVSE 218 (610)
T ss_pred HHHhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEc---CCC---CccceeehHHHHHHHHhcCCC-------cccchhh
Confidence 556788999999999999999999999999999983 556 799999999999888754322 2344444
Q ss_pred ccCcccccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 011043 347 IPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK 411 (495)
Q Consensus 347 l~i~~~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~ 411 (495)
+|+.+++++...+.+.+|+-+|..++++++||++ +|+++|++|..||+++..
T Consensus 219 ------------vmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e-~gq~~Gilt~~dIl~l~s 270 (610)
T COG2905 219 ------------VMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILTLTDILRLFS 270 (610)
T ss_pred ------------hhccCceeecCcchHHHHHHHHHHhCCceeeeec-CCeeeEEeeHHHHHHhhC
Confidence 4999999999999999999999999999999995 899999999999998765
No 152
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.16 E-value=9.3e-10 Score=113.48 Aligned_cols=160 Identities=17% Similarity=0.226 Sum_probs=122.3
Q ss_pred hhccccccCCCCcceEEecCCCCHHHHHHHHHHcCCcEeeeeeCCCCeEEEEeehHHHHHHHHHHhcCCCCCChhhHhhh
Q 011043 168 STHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETH 247 (495)
Q Consensus 168 ~~~~~~d~~p~s~~vi~l~~~~~v~~A~~~l~e~~i~~~Pv~d~~~~~~vGilt~~Dii~~l~~~~~~~~~l~~~~l~~~ 247 (495)
++.++.|+|-+..++++++.+.|+.++++.+.+++.+++||++.+..+++|+++..|++..+.. .. .
T Consensus 189 ~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~~-----~~--------~ 255 (408)
T TIGR03520 189 GNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLNK-----KN--------F 255 (408)
T ss_pred CCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhcc-----CC--------C
Confidence 5678999999888999999999999999999999999999999777799999999999754411 00 1
Q ss_pred hHHHHHHHHhhhccccCCCCcccCCCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHH
Q 011043 248 TISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVC 327 (495)
Q Consensus 248 ~i~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~ 327 (495)
.+.. +| +++..+++++++.++++.|.+++.+.++|+ ++.| ..+|++|..||+..+.
T Consensus 256 ~l~~-----------------~~-~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVv---DE~G---~~~GiVT~eDileeiv 311 (408)
T TIGR03520 256 DWQS-----------------LL-REPYFVPENKKLDDLLRDFQEKKNHLAIVV---DEYG---GTSGLVTLEDIIEEIV 311 (408)
T ss_pred CHHH-----------------Hc-CCCeEeCCCCcHHHHHHHHHhcCceEEEEE---cCCC---CEEEEEEHHHHHHHHh
Confidence 1111 23 467899999999999999999999999999 4666 7999999999999887
Q ss_pred hhhccCCCCCcccccccccccCcccccccCCCCCCCceeecCCCCHHHHHHHH
Q 011043 328 RYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLL 380 (495)
Q Consensus 328 ~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~~~m~~~~~~v~~~~sl~~a~~~m 380 (495)
....+... .-...+..+ ......+....++.++.+.|
T Consensus 312 gei~de~d---~~~~~i~~~-------------~~~~~~v~G~~~l~~l~~~l 348 (408)
T TIGR03520 312 GDISDEFD---DEDLIYSKI-------------DDNNYVFEGKTSLKDFYKIL 348 (408)
T ss_pred CCCCCcCC---cCccceEEe-------------CCCeEEEEeccCHHHHHHHh
Confidence 54332111 001112222 12345677788899888877
No 153
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.16 E-value=3.7e-10 Score=95.99 Aligned_cols=118 Identities=19% Similarity=0.348 Sum_probs=90.8
Q ss_pred CceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCC--cccccccccccCc
Q 011043 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSL--PILKLPICAIPVG 350 (495)
Q Consensus 273 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~--~~l~~~v~~l~i~ 350 (495)
+++++.+++++.+|++.|.+++.+.+||+ +.++ +++|+++..++++............. .....+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~---d~~~---~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~------- 68 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVV---QKAG---ELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPT------- 68 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEE---CCCC---cEEEEEEcHHHHhhccccccccchhhhhhhccCc-------
Confidence 56789999999999999999999999999 3456 89999999999865311100000000 000112
Q ss_pred ccccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011043 351 TWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (495)
Q Consensus 351 ~~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~ 408 (495)
+.++|.+++..+.+++++.++++.|.+.+.+.+||+|++|+++|++|.+|+++
T Consensus 69 -----~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~ 121 (122)
T cd04635 69 -----VEKIMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK 121 (122)
T ss_pred -----HHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence 23337778899999999999999999999999999998899999999999875
No 154
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.16 E-value=6.9e-10 Score=92.71 Aligned_cols=109 Identities=17% Similarity=0.256 Sum_probs=89.0
Q ss_pred CceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccccCccc
Q 011043 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 352 (495)
Q Consensus 273 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 352 (495)
+++.+.+++++.+|++.|.+++...++|++ + + +++|+++..++++.+..... ....++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d---~-~---~~~G~v~~~~l~~~~~~~~~-------~~~~~i~~~----- 62 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRD---G-D---PRLGIVTRTDLLDAVLLDGL-------PSSTPVGEI----- 62 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEec---C-C---eEEEEEEHHHHHHHHHcCCC-------CCCCCHHHH-----
Confidence 456789999999999999999999999993 4 6 79999999999876532100 012234433
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011043 353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (495)
Q Consensus 353 ~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~ 408 (495)
|.+++..+.+++++.++++.|.+++...+||+|+ ++++|++|..|+++
T Consensus 63 -------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~dl~~ 110 (111)
T cd04589 63 -------ATFPLITVDPDDFLFNALLLMTRHRIHRVVVREG-GEVVGVLEQTDLLS 110 (111)
T ss_pred -------hCCCcEEECCCCcHHHHHHHHHHhCccEEEEeeC-CEEEEEEEhHHhhc
Confidence 7778889999999999999999999999999984 89999999999875
No 155
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.16 E-value=4.8e-10 Score=118.00 Aligned_cols=118 Identities=14% Similarity=0.240 Sum_probs=96.3
Q ss_pred ccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCC
Q 011043 355 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQD 434 (495)
Q Consensus 355 ~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~ 434 (495)
+++++|.+++.++.+++++.++++.|.+++++.+||+|++++++|+|+..|+++.+..... ..+.++.+++
T Consensus 336 ~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~----~~~~~v~~im----- 406 (454)
T TIGR01137 336 TVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFAGKA----NPDDAVSKVM----- 406 (454)
T ss_pred CHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhccCC----CcCCCHHHhc-----
Confidence 4456688899999999999999999999999999999988999999999999885543211 1124677655
Q ss_pred CCCCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHh
Q 011043 435 SYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 493 (495)
Q Consensus 435 ~~~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l 493 (495)
.+++.++.+++++.++++.|..++ .+||++ +++++|+||++||+++|
T Consensus 407 --------~~~~~~v~~~~~l~~a~~~~~~~~---~~vV~~-~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 407 --------SKKFIQIGEGEKLSDLSKFLEKNS---SAIVTE-EGKPIGVVTKIDLLSFL 453 (454)
T ss_pred --------CCCCeEECCcCcHHHHHHHHHHCC---eeEEEE-CCEEEEEEEHHHHHHhh
Confidence 567889999999999999998864 345553 58999999999999986
No 156
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.15 E-value=4.7e-10 Score=96.28 Aligned_cols=116 Identities=11% Similarity=0.167 Sum_probs=85.5
Q ss_pred CceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHh-hhccCCCCCcccccccccccCcc
Q 011043 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCR-YFRHCSSSLPILKLPICAIPVGT 351 (495)
Q Consensus 273 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~-~~~~~~~~~~~l~~~v~~l~i~~ 351 (495)
+++++.+++++.+|++.|.+++.+.+||+ ++++ +++|+++..|+.+.... ...... ......++.++
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~---d~~~---~~~Giv~~~dl~~~~~~~~~~~~~--~~~~~~~v~~i---- 69 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVV---DSDD---NFIGVITAVDLLGEEPIKRIQEGG--ISRSELTVADV---- 69 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEE---cCCC---cEEEEEEHHHHhhChhhHHHHHcC--CCchheEHHHh----
Confidence 46789999999999999999999999999 3456 89999999999852210 000000 00112233333
Q ss_pred cccccCCCCCCCceee------cCCCCHHHHHHHHHHCCCCEEEEEcCC-CcEEEEEeHHHHHH
Q 011043 352 WVPKIGEPNRRPLAML------RPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITA 408 (495)
Q Consensus 352 ~~~~v~~~m~~~~~~v------~~~~sl~~a~~~m~~~~~~~lpVvd~~-g~lvGivs~~Dl~~ 408 (495)
|.++...+ .+++++.++++.|.+++.+.+||+|++ |+++|+||.+|+++
T Consensus 70 --------m~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 70 --------MTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred --------cCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 65544332 368899999999999999999999986 79999999999875
No 157
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.14 E-value=1.1e-09 Score=91.61 Aligned_cols=110 Identities=21% Similarity=0.400 Sum_probs=88.6
Q ss_pred CceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccccCccc
Q 011043 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 352 (495)
Q Consensus 273 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 352 (495)
+++.+.+++++.++++.|.+.+.+.+||++ ++ +++|+++..|+++.+...... ....++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~----~~---~~~G~v~~~dl~~~~~~~~~~------~~~~~~~~~----- 63 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVD----NE---KPVGIITERDLVKKVVSRNLK------PREVPVGEV----- 63 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEE----CC---EEEEEEEHHHHHHHHhhccCC------cccCCHHHh-----
Confidence 467789999999999999999999999993 24 799999999999866432100 011233333
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011043 353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (495)
Q Consensus 353 ~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~ 408 (495)
|.+++..+.+++++.++++.|.+.+...+||+|++ +++|+|+.+|+++
T Consensus 64 -------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~ 111 (112)
T cd04802 64 -------MSTPLITIDPNASLNEAAKLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM 111 (112)
T ss_pred -------cCCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence 66778899999999999999999999999999865 9999999999864
No 158
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.13 E-value=7e-10 Score=92.21 Aligned_cols=108 Identities=19% Similarity=0.395 Sum_probs=86.5
Q ss_pred CceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccccCccc
Q 011043 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 352 (495)
Q Consensus 273 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 352 (495)
+++++.+++++.+|++.|.+++++.+||++ + + +++|+++..++++++...... ...++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~---~-~---~~~G~v~~~dl~~~~~~~~~~-------~~~~~~~~----- 62 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVD---D-G---RVVGSIDESDLLDALIEGKAK-------FSLPVREV----- 62 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEee---C-C---eeEEEEeHHHHHHHHhccccc-------cCcCHHHH-----
Confidence 467889999999999999999999999993 4 6 899999999999876432110 11233333
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011043 353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (495)
Q Consensus 353 ~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~ 408 (495)
|.+++..+.+++++.+++++|.+ . ..+||++++|+++|++|.+|+++
T Consensus 63 -------~~~~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~~~~~~~Gvvt~~di~~ 109 (110)
T cd04609 63 -------MGEPLPTVDPDAPIEELSELLDR-G-NVAVVVDEGGKFVGIITRADLLK 109 (110)
T ss_pred -------hcCCCceeCCCCcHHHHHHHHHh-C-CceeEEecCCeEEEEEeHHHhhc
Confidence 66778899999999999999987 3 34788888899999999999875
No 159
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.12 E-value=8e-10 Score=116.18 Aligned_cols=115 Identities=14% Similarity=0.219 Sum_probs=96.5
Q ss_pred cCCCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccccC
Q 011043 270 FPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPV 349 (495)
Q Consensus 270 ~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i 349 (495)
|.++++++.+++++.+|+++|.+++++.+||++....++ +++|++|..|+... . ....++.++
T Consensus 106 mi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~G---klvGIVT~~DL~~v-~-----------~~~~~V~eI-- 168 (505)
T PLN02274 106 FVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGS---KLLGYVTKRDWDFV-N-----------DRETKLSEV-- 168 (505)
T ss_pred ccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCC---eEEEEEEHHHHhhc-c-----------ccCCcHHHH--
Confidence 678899999999999999999999999999994211146 89999999998531 1 113445555
Q ss_pred cccccccCCCCCCC--ceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 011043 350 GTWVPKIGEPNRRP--LAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK 411 (495)
Q Consensus 350 ~~~~~~v~~~m~~~--~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~ 411 (495)
|.++ ++++.+++++.+|+++|.+++...+||+|++++++|+||++||++...
T Consensus 169 ----------Mt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~ 222 (505)
T PLN02274 169 ----------MTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKG 222 (505)
T ss_pred ----------hccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhh
Confidence 7755 789999999999999999999999999999999999999999998664
No 160
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.10 E-value=5.1e-10 Score=117.43 Aligned_cols=110 Identities=21% Similarity=0.275 Sum_probs=91.6
Q ss_pred ceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccccCcccc
Q 011043 274 LVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWV 353 (495)
Q Consensus 274 ~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~ 353 (495)
..++.+++|+.+|+++|.+++++.+||++...+++ +++|++|..||... . .....++.++
T Consensus 107 ~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~g---kLvGIVT~~DLr~~-----~------~~~~~~V~dI------ 166 (502)
T PRK07107 107 DSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHG---KLLGIVTSRDYRIS-----R------MSLDTKVKDF------ 166 (502)
T ss_pred CCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCC---EEEEEEEcHHhhcc-----c------cCCCCCHHHH------
Confidence 35899999999999999999999999995211257 89999999998531 0 0123445555
Q ss_pred cccCCCCCC--CceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 011043 354 PKIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL 409 (495)
Q Consensus 354 ~~v~~~m~~--~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~ 409 (495)
|.+ +++++.+++++.+|+++|.++++..+||+|++++++|+||++|+++.
T Consensus 167 ------Mt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~ 218 (502)
T PRK07107 167 ------MTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSH 218 (502)
T ss_pred ------hCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhc
Confidence 775 78899999999999999999999999999988999999999999874
No 161
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.10 E-value=2.3e-09 Score=88.77 Aligned_cols=111 Identities=24% Similarity=0.461 Sum_probs=90.7
Q ss_pred CceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccccCccc
Q 011043 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 352 (495)
Q Consensus 273 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 352 (495)
++..+.++.++.++++.|.+++.+.+||++ +++ +++|+++..++++.+........ ..+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~~---~~~G~v~~~~l~~~~~~~~~~~~-------~~~~------- 61 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVD---DDG---RLVGIVTERDLLRALAEGGLDPL-------VTVG------- 61 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEEC---CCC---CEEEEEeHHHHHHHHHhccCCcc-------ccHH-------
Confidence 467789999999999999999999999993 446 89999999999987754322110 0012
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011043 353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (495)
Q Consensus 353 ~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~ 408 (495)
+.|..++..+.+++++.++++.|.+.+...+||+|++++++|+++.+|+++
T Consensus 62 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 112 (113)
T cd02205 62 -----DVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR 112 (113)
T ss_pred -----HHhcCCceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence 226667888999999999999999999999999998899999999999874
No 162
>PRK11573 hypothetical protein; Provisional
Probab=99.10 E-value=1.6e-09 Score=111.64 Aligned_cols=122 Identities=14% Similarity=0.234 Sum_probs=99.0
Q ss_pred ccCCCCCC--CceeecCCCCHHHHHHHHHHCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHc
Q 011043 355 KIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQL 431 (495)
Q Consensus 355 ~v~~~m~~--~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~-g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~ 431 (495)
.++++|.+ ++.+++.++++.++++.+.+++++++||.+++ +.++|++..+|++.....+. ......+...
T Consensus 188 ~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~~-------~~~~~~l~~~ 260 (413)
T PRK11573 188 TVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKK-------EFTKENMLRA 260 (413)
T ss_pred ChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhccC-------cCCHHHHHhh
Confidence 34555753 68999999999999999999999999999753 78999999999987543221 1122222211
Q ss_pred CCCCCCCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 011043 432 GQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 495 (495)
Q Consensus 432 ~~~~~~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l~~ 495 (495)
.+++..++++.++.++++.|.+++.|-..|+| +.|...|+||+.||++.++|
T Consensus 261 -----------~r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvD-EyG~~~GiVTleDilEeivG 312 (413)
T PRK11573 261 -----------ADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVD-EYGDIQGLVTVEDILEEIVG 312 (413)
T ss_pred -----------ccCCeEeCCCCcHHHHHHHHHhcCCeEEEEEe-cCCCeEEEeeHHHHHHHHhC
Confidence 24788999999999999999999999999999 47999999999999999986
No 163
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.10 E-value=1.1e-09 Score=91.04 Aligned_cols=107 Identities=21% Similarity=0.376 Sum_probs=86.1
Q ss_pred CCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccccCcc
Q 011043 272 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 351 (495)
Q Consensus 272 ~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~ 351 (495)
++++.+.+++++.++++.|.+++...+||+ ++++ +++|+++..+++... . ...++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~---d~~~---~~~G~v~~~~l~~~~-----~-------~~~~v~~~---- 59 (110)
T cd04601 2 RDPITVSPDATVAEALELMAEYGISGLPVV---DDDG---KLVGIVTNRDLRFET-----D-------LDKPVSEV---- 59 (110)
T ss_pred CCCeEeCCCCcHHHHHHHHHHcCCceEEEE---cCCC---EEEEEEEhhHeeecc-----c-------CCCCHHHh----
Confidence 356788999999999999999999999999 3457 899999999986321 0 11233333
Q ss_pred cccccCCCCCCCceeecC-CCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011043 352 WVPKIGEPNRRPLAMLRP-SASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (495)
Q Consensus 352 ~~~~v~~~m~~~~~~v~~-~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~ 408 (495)
|...+..+.+ ++++.++++.|.+.+.+.+||+|++|+++|+++.+|+++
T Consensus 60 --------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 60 --------MTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK 109 (110)
T ss_pred --------cccCceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence 5555566666 999999999999999999999998899999999999874
No 164
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=99.10 E-value=1.1e-09 Score=95.19 Aligned_cols=110 Identities=22% Similarity=0.349 Sum_probs=81.4
Q ss_pred CceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCc-------ccccCHHHHHHcCCCC
Q 011043 363 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHIN-------LSEMTIHQALQLGQDS 435 (495)
Q Consensus 363 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~-------~~~~~v~~~l~~~~~~ 435 (495)
.+.++.+++++.+|++.|..++.+.+||+|++|+++|++|..|+++........... .....+.+++....
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-- 79 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGI-- 79 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhh--
Confidence 467899999999999999999999999999999999999999999866433211100 00111233331100
Q ss_pred CCCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCC
Q 011043 436 YSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAG 476 (495)
Q Consensus 436 ~~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~ 476 (495)
-.+.|..+++++.+++++.+|++.|.+++++++||+|+.
T Consensus 80 --~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~ 118 (133)
T cd04592 80 --SYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRG 118 (133)
T ss_pred --hhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCC
Confidence 001235678999999999999999999999999999853
No 165
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.09 E-value=1.3e-09 Score=89.94 Aligned_cols=102 Identities=20% Similarity=0.384 Sum_probs=86.0
Q ss_pred CceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccccCccc
Q 011043 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 352 (495)
Q Consensus 273 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 352 (495)
+++.+.+++++.++++.|.+++.+.+||++ ++ +++|+++..++++.. ...++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d----~~---~~~Giv~~~~l~~~~-------------~~~~~~~~----- 56 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE----DG---KLVGIITSRDVRRAH-------------PNRLVADA----- 56 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEE----CC---EEEEEEehHHhhccc-------------ccCCHHHH-----
Confidence 467789999999999999999999999993 36 899999999997521 01223333
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHH
Q 011043 353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT 407 (495)
Q Consensus 353 ~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~ 407 (495)
|..++..+.+++++.++++.|.+++...+||+|+ |+++|++|.+|++
T Consensus 57 -------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~ 103 (105)
T cd04599 57 -------MTREVVTISPEASLLEAKRLMEEKKIERLPVLRE-RKLVGIITKGTIA 103 (105)
T ss_pred -------ccCCCEEECCCCCHHHHHHHHHHcCCCEeeEEEC-CEEEEEEEHHHhc
Confidence 6678889999999999999999999999999986 9999999999986
No 166
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.08 E-value=2.2e-09 Score=88.80 Aligned_cols=105 Identities=22% Similarity=0.434 Sum_probs=87.8
Q ss_pred CCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccccCcc
Q 011043 272 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 351 (495)
Q Consensus 272 ~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~ 351 (495)
++++++.++.++.++++.|.+.+...+||++ + + +++|+++..+++.. . ...++.++
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d---~-~---~~~g~v~~~~l~~~------~-------~~~~~~~~---- 57 (107)
T cd04610 2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVD---N-G---KVVGIVSARDLLGK------D-------PDETVEEI---- 57 (107)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCeeeEeE---C-C---EEEEEEEHHHhhcc------C-------ccccHHHh----
Confidence 4577899999999999999888888999993 3 6 89999999998741 0 01223333
Q ss_pred cccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011043 352 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (495)
Q Consensus 352 ~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~ 408 (495)
|...+.++.+++++.++++.|.+++...+||++++|+++|+++..|+++
T Consensus 58 --------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~ 106 (107)
T cd04610 58 --------MSKDLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVIR 106 (107)
T ss_pred --------CCCCCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence 6677888999999999999999999999999998899999999999874
No 167
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.08 E-value=1.5e-09 Score=90.38 Aligned_cols=102 Identities=16% Similarity=0.314 Sum_probs=83.6
Q ss_pred eCCCCcHHHHHHHHHhCC-----CceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccccCcc
Q 011043 277 AGPNDNLKDVARKILHNE-----VATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 351 (495)
Q Consensus 277 v~~~~sl~~a~~~m~~~~-----i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~ 351 (495)
+.+++++.++++.|.+++ +..+||+ ++++ +++|+++.+++++. . ...++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv---d~~~---~~~G~v~~~~l~~~------~-------~~~~v~~~---- 58 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVV---DEEG---RLLGVVSLRDLLLA------D-------PDTPVSDI---- 58 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEE---CCCC---CEEEEEEHHHHhcC------C-------CcchHHHH----
Confidence 578899999999998777 4788999 3456 79999999998641 0 01223333
Q ss_pred cccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 011043 352 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL 409 (495)
Q Consensus 352 ~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~ 409 (495)
+.+++..+.+++++.++++.|.+.+...+||+|++|+++|++|..|+++.
T Consensus 59 --------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~ 108 (109)
T cd04606 59 --------MDTDVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV 108 (109)
T ss_pred --------hCCCCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence 66778899999999999999999999999999988999999999999864
No 168
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.08 E-value=2.1e-09 Score=91.12 Aligned_cols=117 Identities=18% Similarity=0.379 Sum_probs=89.9
Q ss_pred CceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCC--CcccccccccccCc
Q 011043 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSS--LPILKLPICAIPVG 350 (495)
Q Consensus 273 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~--~~~l~~~v~~l~i~ 350 (495)
++.++.+++++.+|++.|.+.+.+.+||++ +++ +++|+++..++++............ ......++.
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d---~~~---~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~----- 70 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVD---EEG---RLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVK----- 70 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEEC---CCC---cEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHH-----
Confidence 467889999999999999999999999993 456 8999999999987653321110000 000012222
Q ss_pred ccccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011043 351 TWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (495)
Q Consensus 351 ~~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~ 408 (495)
++|..++.++.+++++.++++.|.+.+...+||+++ |+++|+++.+|+++
T Consensus 71 -------~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~ 120 (121)
T cd04584 71 -------EIMTKDVITVHPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR 120 (121)
T ss_pred -------HHhhCCCeEECCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence 236678889999999999999999999999999986 99999999999874
No 169
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.07 E-value=9.2e-10 Score=119.02 Aligned_cols=120 Identities=16% Similarity=0.264 Sum_probs=98.6
Q ss_pred CcccCCCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCccccccccc
Q 011043 267 GKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICA 346 (495)
Q Consensus 267 g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~ 346 (495)
+++|.+++.++++++++.++++.|.+++.+.+||+ ++++ +++|+++.+|+.+.+..... ....++.+
T Consensus 450 ~dim~~~~~~v~~~~tl~ea~~~l~~~~~~~~~Vv---D~~g---~lvGiVt~~dL~~~l~~~~~-------~~~~~v~d 516 (574)
T PRK01862 450 RELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVV---DDDG---RFRGAVALKDITSDLLDKRD-------TTDKTAAD 516 (574)
T ss_pred HHHhcCCCceeCCCCCHHHHHHHHHhCCCceEEEE---cCCC---eEEEEEEHHHHHHHhhcccc-------cccchHHH
Confidence 45788888999999999999999999999999999 3566 89999999999875532110 00123333
Q ss_pred ccCcccccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCC--CcEEEEEeHHHHHHHHh
Q 011043 347 IPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN--DSLLDIYCRSDITALAK 411 (495)
Q Consensus 347 l~i~~~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~--g~lvGivs~~Dl~~~~~ 411 (495)
+|.+++.++.+++++.++++.|.+++.+.+||+|++ ++++|+||++|+++...
T Consensus 517 ------------im~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~ 571 (574)
T PRK01862 517 ------------YAHTPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYR 571 (574)
T ss_pred ------------hccCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHH
Confidence 377888999999999999999999999999999876 58999999999998654
No 170
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.07 E-value=1.7e-09 Score=89.43 Aligned_cols=100 Identities=15% Similarity=0.276 Sum_probs=84.2
Q ss_pred eeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccccCccccc
Q 011043 275 VYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVP 354 (495)
Q Consensus 275 i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~ 354 (495)
+++.+++++.+|++.|.+.+...+||++ + + +++|+++..++++.. ..++.++
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d---~-~---~~~G~v~~~~l~~~~--------------~~~~~~~------- 55 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVD---Y-N---KFLGAVYLKDIENAT--------------YGDVVDY------- 55 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEE---C-C---EEEEEEEHHHHhhhc--------------ccchhhh-------
Confidence 4678999999999999999999999993 4 6 899999999987521 0122222
Q ss_pred ccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011043 355 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (495)
Q Consensus 355 ~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~ 408 (495)
|.....++.++.++.++++.|.+++...+||++ +|+++|++|.+|++.
T Consensus 56 -----~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~~~~iGvit~~dl~~ 103 (104)
T cd04594 56 -----IVRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVD-DGKFKGIVTLDSILD 103 (104)
T ss_pred -----hhcCCcEEcCCCCHHHHHHHHHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence 666788999999999999999999999999998 699999999999874
No 171
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.07 E-value=8.2e-10 Score=107.91 Aligned_cols=110 Identities=16% Similarity=0.234 Sum_probs=92.2
Q ss_pred CcccCCC-ceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccc
Q 011043 267 GKAFPRP-LVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPIC 345 (495)
Q Consensus 267 g~~~~~~-~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~ 345 (495)
+++|.++ +..+.+++++.+|++.|.+.+++.+||+ ++++ +++|+++..|+++.+.... ....++.
T Consensus 158 ~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vv---d~~g---~~~Givt~~dl~~~~~~~~--------~~~~~v~ 223 (268)
T TIGR00393 158 KDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVC---DENN---QLVGVFTDGDLRRALLGGG--------SLKSEVR 223 (268)
T ss_pred HHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEE---eCCC---CEEEEEEcHHHHHHHhcCC--------cccCcHH
Confidence 4578788 8999999999999999999999999999 3556 8999999999987543210 1123444
Q ss_pred cccCcccccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEe
Q 011043 346 AIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYC 402 (495)
Q Consensus 346 ~l~i~~~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs 402 (495)
++ |.+++.++.+++++.+|++.|.+++...+||+|++|+++|+|+
T Consensus 224 ~i------------m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~ 268 (268)
T TIGR00393 224 DF------------MTLGPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH 268 (268)
T ss_pred Hh------------CCCCCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence 44 8888999999999999999999999999999998899999985
No 172
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.07 E-value=2e-09 Score=113.22 Aligned_cols=115 Identities=23% Similarity=0.280 Sum_probs=95.7
Q ss_pred ccCCCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCccccccccccc
Q 011043 269 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIP 348 (495)
Q Consensus 269 ~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ 348 (495)
.|..+++++.+++++.+|+++|.+++++.+||++.+..++ +++|+++.+|+.. .. ....++.++
T Consensus 101 g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~g---kLvGIVt~~DL~~-~~-----------~~~~~V~di- 164 (495)
T PTZ00314 101 GFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGG---KLLGIVTSRDIDF-VK-----------DKSTPVSEV- 164 (495)
T ss_pred ccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCC---eEEEEEEHHHHhh-cc-----------cCCCCHHHh-
Confidence 4667889999999999999999999999999995221246 8999999999862 11 012344444
Q ss_pred CcccccccCCCCCC--CceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 011043 349 VGTWVPKIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA 410 (495)
Q Consensus 349 i~~~~~~v~~~m~~--~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~ 410 (495)
|.+ +++++.+++++.+|+++|.+++...+||+|++++++|+||++||++..
T Consensus 165 -----------Mt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~ 217 (495)
T PTZ00314 165 -----------MTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNR 217 (495)
T ss_pred -----------hCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcc
Confidence 776 789999999999999999999999999999999999999999999753
No 173
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.06 E-value=2.9e-09 Score=93.66 Aligned_cols=126 Identities=27% Similarity=0.476 Sum_probs=94.1
Q ss_pred CceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhc-cC---CCCCccccccccccc
Q 011043 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFR-HC---SSSLPILKLPICAIP 348 (495)
Q Consensus 273 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~-~~---~~~~~~l~~~v~~l~ 348 (495)
+++++.+++++.++++.|.+.+.+.+||++ + + +++|+++..++++++..... .. .........++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd---~-~---~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 73 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLD---G-G---KLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREF- 73 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeE---C-C---eEEEEecHHHHHHHHHhccCccccccCCcceeeeccchhe-
Confidence 567899999999999999999999999993 3 6 89999999999987753321 00 00011112222221
Q ss_pred Cccc-----------ccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011043 349 VGTW-----------VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (495)
Q Consensus 349 i~~~-----------~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~ 408 (495)
..| ...+.++|..++.++.+++++.++++.|.+.+.+.+||+++ ++++|+++.+|++.
T Consensus 74 -~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~ 142 (143)
T cd04634 74 -INWEETKRALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE 142 (143)
T ss_pred -eehHHHHHHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 111 11234557778999999999999999999999999999987 89999999999863
No 174
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.04 E-value=3.4e-09 Score=87.97 Aligned_cols=100 Identities=16% Similarity=0.213 Sum_probs=85.7
Q ss_pred CceeeCCCCcHHHHHHHHHhCCCceeeEEecCCC--CCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccccCc
Q 011043 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQ--DGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVG 350 (495)
Q Consensus 273 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~--~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~ 350 (495)
.+..+.+++++.++.+.|.+.+...+||++ +. ++ +++|+++..++.+.... +
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~--~~~~~~---~~~G~v~~~dl~~~~~~------------------~--- 56 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVD--STEESP---RLVGYILRSQLVVALKN------------------Y--- 56 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEc--CCCCCC---EEEEEEeHHHHHHHHHH------------------h---
Confidence 356789999999999999999999999993 22 57 89999999999765432 1
Q ss_pred ccccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011043 351 TWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (495)
Q Consensus 351 ~~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~ 408 (495)
|.+++.++.+++++.++++.|.+++...+||++ +|+++|++|++|+++
T Consensus 57 ---------m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~ 104 (105)
T cd04591 57 ---------IDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLK 104 (105)
T ss_pred ---------ccCCCceECCCCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhc
Confidence 556788999999999999999999999999995 789999999999875
No 175
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.04 E-value=1.9e-09 Score=112.62 Aligned_cols=164 Identities=18% Similarity=0.298 Sum_probs=117.3
Q ss_pred cEeeeeeCCCCeEEEEeehHHHHHHHHHHhcCC---CCCChhhHhhhhHHHHHHHHhhhccccCCCCcccCCCceeeCCC
Q 011043 204 SMAPLWDFSKARFVGVLSASDFILILRELGNHG---SNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPN 280 (495)
Q Consensus 204 ~~~Pv~d~~~~~~vGilt~~Dii~~l~~~~~~~---~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~ 280 (495)
..+|++.+. ..-+|..++..++......+ .+++.++-. ..++..+ ..++.|.++++++.++
T Consensus 33 l~~p~~s~~----mdtvTe~ema~~ma~~gg~GvI~~n~~~e~q~----~~V~~Vk--------~~~~~~~~~~vtl~~~ 96 (450)
T TIGR01302 33 LNIPILSSP----MDTVTESRMAIAMAREGGIGVIHRNMSIEEQA----EQVKRVK--------RAENGIISDPVTISPE 96 (450)
T ss_pred cCCCeeecC----CCccCHHHHHHHHHhcCCCceeecCCCHHHHH----HHHhhhc--------cccCceecCceEeCCC
Confidence 457888642 34478888887776544322 122111100 1111111 1134577889999999
Q ss_pred CcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccccCcccccccCCCC
Q 011043 281 DNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPN 360 (495)
Q Consensus 281 ~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~~~m 360 (495)
+++.+|+++|.+++++++||++.+...+ +++|+++.+|++... . ...++.++ |
T Consensus 97 ~tv~eal~~m~~~~~s~lpVvd~~~~~~---~lvGIVt~rDL~~~~-----~-------~~~~V~dv------------m 149 (450)
T TIGR01302 97 TTVADVLELMERKGISGIPVVEDGDMTG---KLVGIITKRDIRFVK-----D-------KGKPVSEV------------M 149 (450)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCCCCC---eEEEEEEHHHHhhhh-----c-------CCCCHHHh------------h
Confidence 9999999999999999999995211115 899999999996321 0 12344444 7
Q ss_pred C-CCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 011043 361 R-RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA 410 (495)
Q Consensus 361 ~-~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~ 410 (495)
. .+++++.+++++.++++.|.+++...+||+|++|+++|+||.+||++..
T Consensus 150 ~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~ 200 (450)
T TIGR01302 150 TREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRR 200 (450)
T ss_pred CCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhcc
Confidence 7 4899999999999999999999999999999999999999999999754
No 176
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.00 E-value=4.3e-09 Score=88.96 Aligned_cols=113 Identities=13% Similarity=0.219 Sum_probs=86.7
Q ss_pred CceeeCCCCcHHHHHHHHHhCC-CceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccccCcc
Q 011043 273 PLVYAGPNDNLKDVARKILHNE-VATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 351 (495)
Q Consensus 273 ~~i~v~~~~sl~~a~~~m~~~~-i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~ 351 (495)
++.++.+++++.+|++.|.+.+ .+.+||++ + + +++|+++..++++++...+... .....++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd---~-~---~~~G~v~~~~l~~~~~~~~~~~----~~~~~~v~------ 64 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVD---D-G---RPVGLIMREALMELLSTPYGRA----LYGKKPVS------ 64 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEE---C-C---eeEEEEEHHHHHHHHhchhhHH----HHcCCcHH------
Confidence 4567899999999999998877 89999993 4 7 8999999999987654321000 00012233
Q ss_pred cccccCCCCCCCceeecCCCCHHHHHHHHHHCCCC---EEEEEcCCCcEEEEEeHHHHHH
Q 011043 352 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVS---SIPIVDDNDSLLDIYCRSDITA 408 (495)
Q Consensus 352 ~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~---~lpVvd~~g~lvGivs~~Dl~~ 408 (495)
++|..++..+.+++++.++++.|.+++.. ..+|++++|+++|+||..|+++
T Consensus 65 ------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~ 118 (119)
T cd04598 65 ------EVMDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR 118 (119)
T ss_pred ------HhcCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence 33778899999999999999999887753 4468888899999999999864
No 177
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=98.98 E-value=3.3e-09 Score=102.06 Aligned_cols=114 Identities=15% Similarity=0.302 Sum_probs=97.2
Q ss_pred CcccC--CCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCccccccc
Q 011043 267 GKAFP--RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPI 344 (495)
Q Consensus 267 g~~~~--~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v 344 (495)
+++|. ....++.+++++.+..++..+.+.+|+||+ +... +++|++|.+|++.. .-+.++
T Consensus 191 edi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVv---n~~~---kvvGvVt~rDv~~~-------------~~~t~i 251 (432)
T COG4109 191 EDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVV---NRSM---KVVGVVTMRDVLDK-------------KPSTTI 251 (432)
T ss_pred HHhccccccceeccccccHHHHHHHHHHcCCCcccee---cccc---eEEEEEEehhhhcC-------------CCCccH
Confidence 34555 567889999999999999999999999999 3555 89999999999731 112334
Q ss_pred ccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 011043 345 CAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK 411 (495)
Q Consensus 345 ~~l~i~~~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~ 411 (495)
... |+++++++.+.+++..+.++|.-.++.-+||+|++.+++|+||++|+++.+.
T Consensus 252 eKV------------Mtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq 306 (432)
T COG4109 252 EKV------------MTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQ 306 (432)
T ss_pred HHH------------hccCCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHH
Confidence 333 9999999999999999999999999999999999999999999999998664
No 178
>PRK11573 hypothetical protein; Provisional
Probab=98.94 E-value=3e-08 Score=102.39 Aligned_cols=132 Identities=14% Similarity=0.167 Sum_probs=108.4
Q ss_pred hhccccccCCCCcceEEecCCCCHHHHHHHHHHcCCcEeeeeeCCCCeEEEEeehHHHHHHHHHHhcCCCCCChhhHhhh
Q 011043 168 STHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETH 247 (495)
Q Consensus 168 ~~~~~~d~~p~s~~vi~l~~~~~v~~A~~~l~e~~i~~~Pv~d~~~~~~vGilt~~Dii~~l~~~~~~~~~l~~~~l~~~ 247 (495)
++.++.|+|-+..++++++.+.|+.++++.+.+.+.+.+||++.+..+++|++...|++..+.. +...
T Consensus 185 ~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~----~~~~-------- 252 (413)
T PRK11573 185 EKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTE----KKEF-------- 252 (413)
T ss_pred CCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhc----cCcC--------
Confidence 5678999999999999999999999999999999999999999877899999999999865421 1111
Q ss_pred hHHHHHHHHhhhccccCCCCcccCCCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHH
Q 011043 248 TISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVC 327 (495)
Q Consensus 248 ~i~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~ 327 (495)
....+.+ ..+++..++++.++.++++.|.+++.+...|+ ++-| ...|++|..||+..+.
T Consensus 253 ~~~~l~~---------------~~r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVv---DEyG---~~~GiVTleDilEeiv 311 (413)
T PRK11573 253 TKENMLR---------------AADEIYFVPEGTPLSTQLVKFQRNKKKVGLVV---DEYG---DIQGLVTVEDILEEIV 311 (413)
T ss_pred CHHHHHh---------------hccCCeEeCCCCcHHHHHHHHHhcCCeEEEEE---ecCC---CeEEEeeHHHHHHHHh
Confidence 1111111 13578899999999999999999999999999 4667 7999999999999887
Q ss_pred hhhcc
Q 011043 328 RYFRH 332 (495)
Q Consensus 328 ~~~~~ 332 (495)
....+
T Consensus 312 Gei~d 316 (413)
T PRK11573 312 GDFTT 316 (413)
T ss_pred CCCCc
Confidence 65543
No 179
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=98.90 E-value=2e-08 Score=104.54 Aligned_cols=115 Identities=19% Similarity=0.322 Sum_probs=96.6
Q ss_pred CC--CCceeecCCCCHHHHHHHHHHCCCCEEEEEc-CCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCC
Q 011043 360 NR--RPLAMLRPSASLSAALNLLVQAQVSSIPIVD-DNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSY 436 (495)
Q Consensus 360 m~--~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd-~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~ 436 (495)
|. .++.++..+.++.++.+.+.+++++++||++ +.+.++|++..+|++....++.. . ......
T Consensus 212 MtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~-~-----~~~~~~-------- 277 (429)
T COG1253 212 MTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS-D-----LDLRVL-------- 277 (429)
T ss_pred eeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcc-c-----cchhhc--------
Confidence 64 4688899999999999999999999999998 56789999999999986654421 0 111111
Q ss_pred CCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 011043 437 SPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 495 (495)
Q Consensus 437 ~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l~~ 495 (495)
-+++..++++.++.+++++|.+.+.|-..|+| +-|.+.|+||+.||++.++|
T Consensus 278 ------~~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvD-EyG~~~GlVTleDIiEeIvG 329 (429)
T COG1253 278 ------VRPPLFVPETLSLSDLLEEFREERTHMAIVVD-EYGGVEGLVTLEDIIEEIVG 329 (429)
T ss_pred ------ccCCeEecCCCcHHHHHHHHHHhCCeEEEEEE-cCCCeEEEeEHHHHHHHHhC
Confidence 13788999999999999999999999999999 47999999999999999987
No 180
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.89 E-value=2.7e-08 Score=82.24 Aligned_cols=104 Identities=22% Similarity=0.413 Sum_probs=84.8
Q ss_pred CceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccccCccc
Q 011043 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 352 (495)
Q Consensus 273 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 352 (495)
++.++.+++++.+++..|.+.+.+.+||++ +++ +++|+++..++++.. . ..++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~~---~~~g~v~~~~l~~~~----~---------~~~~~~~----- 57 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVK---KSG---ELVGIITRKDLLRNP----E---------EEQLALL----- 57 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEc---CCC---cEEEEEEHHHHHhcc----c---------cchHHHH-----
Confidence 467888999999999999998999999993 446 899999999987410 0 0122222
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011043 353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (495)
Q Consensus 353 ~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~ 408 (495)
|..++.++.+++++.++++.|.+.+...+||+| +|+++|+++..|+++
T Consensus 58 -------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd-~~~~~G~it~~d~~~ 105 (106)
T cd04638 58 -------MTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVD-DGKLVGIVTVADIVR 105 (106)
T ss_pred -------hcCCCceECCCCCHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHhhc
Confidence 556788899999999999999999999999998 479999999999874
No 181
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=98.89 E-value=1.4e-08 Score=106.99 Aligned_cols=116 Identities=12% Similarity=0.194 Sum_probs=92.3
Q ss_pred CcccCCCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCccccccccc
Q 011043 267 GKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICA 346 (495)
Q Consensus 267 g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~ 346 (495)
+++|.++++++.+++++.+|++.|.+++++.+||++ +++ +++|+++..|+++.+..... ....++.+
T Consensus 338 ~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd---~~~---~~~Givt~~dl~~~~~~~~~-------~~~~~v~~ 404 (454)
T TIGR01137 338 KDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVT---EAG---KVLGSVTLRELLSALFAGKA-------NPDDAVSK 404 (454)
T ss_pred HHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEc---CCC---eEEEEEEHHHHHHHHhccCC-------CcCCCHHH
Confidence 457888999999999999999999999999999993 456 89999999999886543110 01223444
Q ss_pred ccCcccccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 011043 347 IPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA 410 (495)
Q Consensus 347 l~i~~~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~ 410 (495)
+ |.+++.++.+++++.+++++|.+++ .++|+++++++|+||++|+++.+
T Consensus 405 i------------m~~~~~~v~~~~~l~~a~~~~~~~~---~~vV~~~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 405 V------------MSKKFIQIGEGEKLSDLSKFLEKNS---SAIVTEEGKPIGVVTKIDLLSFL 453 (454)
T ss_pred h------------cCCCCeEECCcCcHHHHHHHHHHCC---eeEEEECCEEEEEEEHHHHHHhh
Confidence 4 7778889999999999999998754 34555579999999999998753
No 182
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.86 E-value=5e-09 Score=76.56 Aligned_cols=54 Identities=30% Similarity=0.506 Sum_probs=50.7
Q ss_pred ccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 011043 441 LRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 495 (495)
Q Consensus 441 ~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l~~ 495 (495)
+|.++++++++++++.++++.|.+++++++||+|+ +|+++|+||.+||++++++
T Consensus 4 ~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~-~~~~~G~is~~dl~~~l~~ 57 (57)
T PF00571_consen 4 IMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDE-DGKLVGIISRSDLLKALLD 57 (57)
T ss_dssp HSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEEST-TSBEEEEEEHHHHHHHHHG
T ss_pred CCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEec-CCEEEEEEEHHHHHhhhhC
Confidence 56889999999999999999999999999999995 7999999999999999864
No 183
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=98.85 E-value=1.5e-08 Score=104.24 Aligned_cols=115 Identities=16% Similarity=0.300 Sum_probs=99.4
Q ss_pred ccCCCCCCCceeecCCCCHHHHHHHHHH-----CCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHH
Q 011043 355 KIGEPNRRPLAMLRPSASLSAALNLLVQ-----AQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQAL 429 (495)
Q Consensus 355 ~v~~~m~~~~~~v~~~~sl~~a~~~m~~-----~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l 429 (495)
.+|.+|...++++.++.|+.+++..+.+ ..+..+.|+|++++++|+++.++++..-. +..+.++|
T Consensus 133 taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll~a~~----------~~~i~~im 202 (451)
T COG2239 133 TAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLLTAEP----------DELLKDLM 202 (451)
T ss_pred hhhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHhcCCc----------HhHHHHHh
Confidence 4566699999999999999999999984 34578999999999999999999885311 24566654
Q ss_pred HcCCCCCCCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHh
Q 011043 430 QLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 493 (495)
Q Consensus 430 ~~~~~~~~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l 493 (495)
.+.++++.+++...++.+.+.+++.-.+||||+ +++++|+||..|++..+
T Consensus 203 -------------~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~-~~~LiG~itiDDiidvi 252 (451)
T COG2239 203 -------------EDDVVSVLADDDQEEVARLFEKYDLLAVPVVDE-DNRLIGIITIDDIIDVI 252 (451)
T ss_pred -------------cccceeecccCCHHHHHHHHHHhCCeecceECC-CCceeeeeeHHHHHHHH
Confidence 667999999999999999999999999999995 79999999999998765
No 184
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=98.82 E-value=3.5e-08 Score=85.73 Aligned_cols=113 Identities=16% Similarity=0.175 Sum_probs=79.1
Q ss_pred CceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCC-Ccccc---ccccccc
Q 011043 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSS-LPILK---LPICAIP 348 (495)
Q Consensus 273 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~-~~~l~---~~v~~l~ 348 (495)
.++++.+++++.+|++.|.++++..+||+ ++++ +++|++|..|+++++.......... ...+. ..+.++.
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~Vv---D~~g---~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~ 75 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVV---DSDD---FLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVC 75 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEE---CCCC---eEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHh
Confidence 46789999999999999999999999999 3556 8999999999998775432110000 00000 0011110
Q ss_pred CcccccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCC
Q 011043 349 VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN 394 (495)
Q Consensus 349 i~~~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~ 394 (495)
.. ..+.+.|..+++++.+++++.+|+++|.+++++++||+|++
T Consensus 76 ~~---~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~ 118 (133)
T cd04592 76 TK---GISYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRG 118 (133)
T ss_pred hh---hhhhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCC
Confidence 00 00112245678999999999999999999999999999853
No 185
>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.79 E-value=2.1e-08 Score=79.12 Aligned_cols=70 Identities=30% Similarity=0.442 Sum_probs=58.7
Q ss_pred eEEEE-ecCCCceEEEEEccCCCCCCCCCCcccCCCCeEEEEEEeCC-ceEEEEEEECCEEeeCCCCCeeeCCC
Q 011043 27 PMRFV-WPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPP-GYHQYKFCVDGEWRHDEHQPFISSEY 98 (495)
Q Consensus 27 ~~~f~-~~~~~~~V~v~Gsf~~W~~~~~m~~~~~~~~~~~~~~~l~~-g~~~ykf~vdg~w~~d~~~~~~~~~~ 98 (495)
.++|+ |..++++|.|+++|++|....+|.+. ..|.|++.+.+.. |.|.|+|+|+|.|.+++.++......
T Consensus 5 ~v~f~v~ap~a~~v~l~~~~~~~~~~~~~~~~--~~g~w~~~v~~~~~~~~~Y~~~v~~~~~~~~~~~~~~~~~ 76 (83)
T cd02688 5 GVTFTVRGPKAQRVSLAGSFNGDTQLIPMTKV--EDGYWEVELPLPSPGKYQYKYVLDGGKGPDEGEPKADEGG 76 (83)
T ss_pred cEEEEEECCCCCEEEEEEEECCCCCcccCEEC--CCceEEEEEcCCCCCCeEEEEEEeCCCCCCCCChhhhcCC
Confidence 57788 77788999999999997666899875 3699999999988 99999999999999998885554443
No 186
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.78 E-value=1.2e-08 Score=74.48 Aligned_cols=53 Identities=28% Similarity=0.498 Sum_probs=49.9
Q ss_pred CCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 011043 358 EPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA 410 (495)
Q Consensus 358 ~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~ 410 (495)
++|.++++++.+++++.++++.|.+++++++||+|++|+++|++|.+||++++
T Consensus 3 ~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l 55 (57)
T PF00571_consen 3 DIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKAL 55 (57)
T ss_dssp HHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHH
T ss_pred ECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhh
Confidence 44888999999999999999999999999999999999999999999999865
No 187
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.78 E-value=3e-07 Score=93.18 Aligned_cols=108 Identities=18% Similarity=0.286 Sum_probs=90.9
Q ss_pred CceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCCCCcccc
Q 011043 363 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 442 (495)
Q Consensus 363 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~m 442 (495)
......++.+..++++.|...+...+.|+|+++++.|.++.+++..+.... ..+.+.+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---------~~~~~~~------------- 308 (363)
T TIGR01186 251 GPITKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVVDVESIKQARKKA---------QGLQDVL------------- 308 (363)
T ss_pred cceeecCCCCHHHHHHHHHhcCCceEEEEcCCCCEEEEEeHHHHHHHhhcC---------Cchhhhh-------------
Confidence 334566777899999999999999999999999999999999988765432 2344443
Q ss_pred CCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHhh
Q 011043 443 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 494 (495)
Q Consensus 443 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l~ 494 (495)
...+.++.++++|.+++..|..++.. +||||+ +|+++|+||..+|+++|.
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~-~~~~~g~i~~~~~~~~~~ 358 (363)
T TIGR01186 309 IDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDE-DQRLVGIVTRGSLVDALY 358 (363)
T ss_pred ccCCceECCCCcHHHHHHHHHhCCCC-EEEECC-CCcEEEEEEHHHHHHHHH
Confidence 44677899999999999999999998 999995 799999999999999885
No 188
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=98.74 E-value=4.7e-08 Score=79.88 Aligned_cols=67 Identities=24% Similarity=0.542 Sum_probs=52.3
Q ss_pred eEEEE-ecCCCceEEEEEccCCCCCC-CCCCcccCCCCeEEEEEEe--------CCc-eEEEEEEE-CCEE--eeCCCCC
Q 011043 27 PMRFV-WPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWSI--------PPG-YHQYKFCV-DGEW--RHDEHQP 92 (495)
Q Consensus 27 ~~~f~-~~~~~~~V~v~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~l--------~~g-~~~ykf~v-dg~w--~~d~~~~ 92 (495)
-++|+ |...|++|+|+|+||+|++. .+|.+. ..|.|++.++. +.| .|+|++.. ||+| +.||-+.
T Consensus 6 g~~FrvwAP~A~~V~l~GdFn~W~~~~~~m~k~--~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G~~~~~~DPyA~ 83 (99)
T cd02854 6 GVTYREWAPNAEEVYLIGDFNNWDRNAHPLKKD--EFGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSGEWIDRIPAWIK 83 (99)
T ss_pred eEEEEEECCCCCEEEEEccCCCCCCcCcccEEC--CCCEEEEEECCcccccccCCCCCEEEEEEEeCCCCEEEEcCccee
Confidence 46788 99999999999999999874 689885 47999999874 344 66666666 7875 6888776
Q ss_pred eee
Q 011043 93 FIS 95 (495)
Q Consensus 93 ~~~ 95 (495)
.+.
T Consensus 84 ~~~ 86 (99)
T cd02854 84 YVT 86 (99)
T ss_pred EEE
Confidence 543
No 189
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=98.60 E-value=1.3e-06 Score=91.02 Aligned_cols=131 Identities=19% Similarity=0.349 Sum_probs=108.4
Q ss_pred hhhccccccCCCCcceEEecCCCCHHHHHHHHHHcCCcEeeeeeCCCCeEEEEeehHHHHHHHHHHhcCCCCCChhhHhh
Q 011043 167 LSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELET 246 (495)
Q Consensus 167 l~~~~~~d~~p~s~~vi~l~~~~~v~~A~~~l~e~~i~~~Pv~d~~~~~~vGilt~~Dii~~l~~~~~~~~~l~~~~l~~ 246 (495)
|.+.++-+.|-+..+++.++.+.++.++++.+.+.+.++.||++.....++|++...|++..+.... ....
T Consensus 203 l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~---~~~~------ 273 (429)
T COG1253 203 LDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQ---SDLD------ 273 (429)
T ss_pred cCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCc---cccc------
Confidence 3567789999888999999999999999999999999999999977789999999999987663211 0000
Q ss_pred hhHHHHHHHHhhhccccCCCCcccCCCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHH
Q 011043 247 HTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCV 326 (495)
Q Consensus 247 ~~i~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l 326 (495)
.. . .-++++.++++.++.++++.|.+.+.+...|+ ++-| ...|++|..||+..+
T Consensus 274 --~~------~------------~~~~~~~Vpet~~~~~lL~~~r~~~~hmAiVv---DEyG---~~~GlVTleDIiEeI 327 (429)
T COG1253 274 --LR------V------------LVRPPLFVPETLSLSDLLEEFREERTHMAIVV---DEYG---GVEGLVTLEDIIEEI 327 (429)
T ss_pred --hh------h------------cccCCeEecCCCcHHHHHHHHHHhCCeEEEEE---EcCC---CeEEEeEHHHHHHHH
Confidence 00 0 12378899999999999999999999999999 4667 799999999999998
Q ss_pred Hhhhcc
Q 011043 327 CRYFRH 332 (495)
Q Consensus 327 ~~~~~~ 332 (495)
.....+
T Consensus 328 vGei~d 333 (429)
T COG1253 328 VGEIPD 333 (429)
T ss_pred hCCCcC
Confidence 876543
No 190
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=98.60 E-value=1.3e-07 Score=86.41 Aligned_cols=112 Identities=16% Similarity=0.399 Sum_probs=97.7
Q ss_pred CceeecCCCCHHHHHHHHHHCCCCEEEEEcC-CCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCCCCccc
Q 011043 363 PLAMLRPSASLSAALNLLVQAQVSSIPIVDD-NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL 441 (495)
Q Consensus 363 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~-~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~ 441 (495)
+.+++..+.++.+++..+.+..++++||+.+ .+.+.|++-.+||++++..... ...+.+++
T Consensus 78 QM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~~------~F~i~~lL------------ 139 (293)
T COG4535 78 QMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDAE------PFDIKELL------------ 139 (293)
T ss_pred HheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCcc------cccHHHhc------------
Confidence 5788999999999999999999999999965 4689999999999998655421 25667765
Q ss_pred cCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 011043 442 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 495 (495)
Q Consensus 442 m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l~~ 495 (495)
++.+.|+++-.|...++-|...+.|-..|||+ -|-+-|.||..||+..++|
T Consensus 140 --RPav~VPESKrvd~lLkeFR~~RnHMAIViDE-fGgVsGLVTIEDiLEqIVG 190 (293)
T COG4535 140 --RPAVVVPESKRVDRLLKEFRSQRNHMAIVIDE-FGGVSGLVTIEDILEQIVG 190 (293)
T ss_pred --ccceecccchhHHHHHHHHHhhcCceEEEEec-cCCeeeeEEHHHHHHHHhc
Confidence 57888999999999999999999999999994 7999999999999999886
No 191
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.58 E-value=7.3e-07 Score=91.54 Aligned_cols=104 Identities=13% Similarity=0.184 Sum_probs=87.7
Q ss_pred ecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCCCCccccCCcc
Q 011043 367 LRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRC 446 (495)
Q Consensus 367 v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~m~~~~ 446 (495)
..++.+..+++..|...+...++|+|++++++|+++..++......+ .++...+ ....
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---------~~~~~~~-------------~~~~ 347 (400)
T PRK10070 290 KTPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLKTALTQQ---------QGLDAAL-------------IDAP 347 (400)
T ss_pred cCCCCCHHHHHHHHHhcCCceEEEEcCCCcEEEEEeHHHHHhhhhcC---------Cchhhhh-------------ccCC
Confidence 34667889999999999999999999999999999999998654432 2344443 3457
Q ss_pred eEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHhh
Q 011043 447 QMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 494 (495)
Q Consensus 447 ~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l~ 494 (495)
.++.++++|.+++..|...... +||||+ +|+++|+||..++++.|.
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~-~~v~~~-~~~~~g~~~~~~~~~~~~ 393 (400)
T PRK10070 348 LAVDAQTPLSELLSHVGQAPCA-VPVVDE-DQQYVGIISKGMLLRALD 393 (400)
T ss_pred ceeCCCCCHHHHHHHHHhCCCc-EEEECC-CCcEEEEEEHHHHHHHHH
Confidence 8899999999999999998776 999995 799999999999999875
No 192
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=98.52 E-value=6.7e-07 Score=87.40 Aligned_cols=122 Identities=15% Similarity=0.258 Sum_probs=100.2
Q ss_pred ccCCCCC--CCceeecCCCCHHHHHHHHHHCCCCEEEEEcC-CCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHc
Q 011043 355 KIGEPNR--RPLAMLRPSASLSAALNLLVQAQVSSIPIVDD-NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQL 431 (495)
Q Consensus 355 ~v~~~m~--~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~-~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~ 431 (495)
+|.++|. ..+..+..+++..++.+.+....+.++|+..+ -+.++|++..+|+++++.+... .+-.++++.
T Consensus 201 tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~-------~~k~d~~~~ 273 (423)
T COG4536 201 TVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNE-------FTKEDILRA 273 (423)
T ss_pred eeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCc-------ccHhHHHHH
Confidence 3455564 46889999999999999999999999999943 3569999999999998866531 223333322
Q ss_pred CCCCCCCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 011043 432 GQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 495 (495)
Q Consensus 432 ~~~~~~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l~~ 495 (495)
-..++.+++.++|.+-+..|.+++-|.-.||| |-|.+.|+||+.||+..++|
T Consensus 274 -----------a~epyFVPe~Tpl~~QL~~F~~~k~hialVVD-EYG~i~GLVTLEDIlEEIVG 325 (423)
T COG4536 274 -----------ADEPYFVPEGTPLSDQLVAFQRNKKHIALVVD-EYGDIQGLVTLEDILEEIVG 325 (423)
T ss_pred -----------hcCCeecCCCCcHHHHHHHHHHhcceEEEEEe-ccCcEEeeeeHHHHHHHHhc
Confidence 24688999999999999999999999999999 47999999999999999886
No 193
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=98.49 E-value=8.2e-08 Score=76.42 Aligned_cols=57 Identities=32% Similarity=0.599 Sum_probs=46.0
Q ss_pred eEEEE-ecCCCceEEEEEccCC-CCCC-CCCCcccCCCCeEEEEEE--eCCceEEEEEEECCE
Q 011043 27 PMRFV-WPYGGRSVFLSGSFNR-WSEL-LPMSPVEGCPTVFQIIWS--IPPGYHQYKFCVDGE 84 (495)
Q Consensus 27 ~~~f~-~~~~~~~V~v~Gsf~~-W~~~-~~m~~~~~~~~~~~~~~~--l~~g~~~ykf~vdg~ 84 (495)
-++|+ |...|++|.|++.|++ |... ++|.+. +.+|.|+++++ +++|.+.|+|+|+|.
T Consensus 12 ~~~F~vwaP~A~~V~l~~~~~~~~~~~~~~m~~~-~~~G~w~~~~~~~~~~g~~~Y~y~i~~~ 73 (85)
T PF02922_consen 12 GVTFRVWAPNAKSVELVLYFNGSWPAEEYPMTRK-DDDGVWEVTVPGDLPPGGYYYKYRIDGD 73 (85)
T ss_dssp EEEEEEE-TTESEEEEEEETTTSSEEEEEEEEEE-CTTTEEEEEEEGCGTTTT-EEEEEEEET
T ss_pred EEEEEEECCCCCEEEEEEEeeecCCCceEEeeec-CCCCEEEEEEcCCcCCCCEEEEEEEEeC
Confidence 57888 9999999999999999 8754 688841 45899999998 888888888888764
No 194
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.40 E-value=4.3e-07 Score=93.75 Aligned_cols=137 Identities=18% Similarity=0.312 Sum_probs=106.0
Q ss_pred ccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCC-----CcEEEEEeHHHHHHHHhhcccccC--cccc-----
Q 011043 355 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-----DSLLDIYCRSDITALAKDKAYAHI--NLSE----- 422 (495)
Q Consensus 355 ~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~-----g~lvGivs~~Dl~~~~~~~~~~~l--~~~~----- 422 (495)
.++|+|+++++++..-+.+..+.+.+....++.+||||+. +++.|+|-++.++.+++++.+..- +..+
T Consensus 583 ~a~ev~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~~~~~~~~ 662 (762)
T KOG0474|consen 583 TAGEVMSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRSTFDLPVRR 662 (762)
T ss_pred hHhhhccCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCccccCcchhh
Confidence 4578899999999999999999999999999999999852 589999999999988877655421 1111
Q ss_pred -cCHHHHHHcCCCC----CCC---------ccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHH
Q 011043 423 -MTIHQALQLGQDS----YSP---------YELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSD 488 (495)
Q Consensus 423 -~~v~~~l~~~~~~----~~~---------~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~D 488 (495)
.+.+++......- -.. ..+|.+.++++.+++++.+++..+..-+.|++.||+. .++++|++|++|
T Consensus 663 ~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~-~~~~~gilTR~D 741 (762)
T KOG0474|consen 663 KFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPK-TNRVVGILTRKD 741 (762)
T ss_pred cCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecC-CCceeEEEehhh
Confidence 2222322111000 000 0268889999999999999999999999999999995 678899999999
Q ss_pred HHHH
Q 011043 489 IFKF 492 (495)
Q Consensus 489 Il~~ 492 (495)
+.++
T Consensus 742 ~~~~ 745 (762)
T KOG0474|consen 742 LARY 745 (762)
T ss_pred hhhH
Confidence 9854
No 195
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.34 E-value=4.4e-06 Score=82.40 Aligned_cols=164 Identities=17% Similarity=0.247 Sum_probs=115.8
Q ss_pred CcEeeeeeCCCCeEEEEeehHHHHHHHHHHhcCC---CCCChhhHhhhhHHHHHHHHhhhccccCCCCcccCCCceeeCC
Q 011043 203 ISMAPLWDFSKARFVGVLSASDFILILRELGNHG---SNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGP 279 (495)
Q Consensus 203 i~~~Pv~d~~~~~~vGilt~~Dii~~l~~~~~~~---~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~ 279 (495)
-...|++.+ ...-+|..+-+-++..+...+ .+-+.+ .....+..|+..+.. ...+++.+.|
T Consensus 60 tl~tPlvsS----pMDTVtes~MAiaMAl~ggIg~IHhNctpe-~QA~~v~~vK~~~~g-----------~~~~p~v~sp 123 (503)
T KOG2550|consen 60 TLNTPLVSS----PMDTVTESEMAIAMALLGGIGFIHHNCTPE-DQADMVRRVKNYENG-----------FINNPIVISP 123 (503)
T ss_pred cccCceecc----CCcccchhHHHHHHHhcCCceeeecCCCHH-HHHHHHHHHHHhhcc-----------cccCCcccCC
Confidence 344587754 345578888776665443211 222222 122234455544432 2456678899
Q ss_pred CCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccccCcccccccCCC
Q 011043 280 NDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEP 359 (495)
Q Consensus 280 ~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~~~ 359 (495)
+.++.++++.-.+++...+||.....-.. +++|++|-+|| .|+.++ ...+.+ +
T Consensus 124 ~~tvg~v~~~k~~~gF~g~pvTe~g~~~~---KLvG~vtsrdi-~f~~~~-----------~~~~~~------------v 176 (503)
T KOG2550|consen 124 TTTVGEVKEAKEKHGFSGIPVTEDGKRGS---KLVGIITSRDI-QFLEDN-----------SLLVSD------------V 176 (503)
T ss_pred cccchhhhhhcccccccccccccCCcccc---eeEEEEehhhh-hhhhcc-----------cchhhh------------h
Confidence 99999999999999999999994222223 89999999997 455221 123333 3
Q ss_pred CCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 011043 360 NRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL 409 (495)
Q Consensus 360 m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~ 409 (495)
|.+..++.....++.++-+++.+.+...+||||++|+++.++++.||.+.
T Consensus 177 mt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~ 226 (503)
T KOG2550|consen 177 MTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKN 226 (503)
T ss_pred cccccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhh
Confidence 77777888999999999999999999999999999999999999999763
No 196
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.33 E-value=1.1e-06 Score=86.60 Aligned_cols=107 Identities=19% Similarity=0.274 Sum_probs=91.4
Q ss_pred CceeecCCCCHHHHHHHHHHCCCCEEEEEcC---CCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCCCCc
Q 011043 363 PLAMLRPSASLSAALNLLVQAQVSSIPIVDD---NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPY 439 (495)
Q Consensus 363 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~---~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~ 439 (495)
+++.+.|+.++.++++....++...+||..+ ..+|+|+||.+|+-.+ .+. ...+.++
T Consensus 117 ~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~-~~~--------~~~~~~v----------- 176 (503)
T KOG2550|consen 117 NPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL-EDN--------SLLVSDV----------- 176 (503)
T ss_pred CCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhh-hcc--------cchhhhh-----------
Confidence 5677899999999999999999999999963 4589999999998766 222 2455654
Q ss_pred cccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHH
Q 011043 440 ELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 492 (495)
Q Consensus 440 ~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~ 492 (495)
|+.+.++.+...+|.++-+++.+++...|||||+ +|.++.+|+++||.+.
T Consensus 177 --mt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~-~gelva~~~rtDl~k~ 226 (503)
T KOG2550|consen 177 --MTKNPVTGAQGITLKEANEILKKIKKGKLPVVDD-KGELVAMLSRTDLMKN 226 (503)
T ss_pred --cccccccccccccHHHHHHHHHhhhcCCcceecc-CCceeeeeehhhhhhh
Confidence 4667788999999999999999999999999995 7999999999999875
No 197
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=98.33 E-value=9.3e-06 Score=79.57 Aligned_cols=131 Identities=19% Similarity=0.315 Sum_probs=108.6
Q ss_pred hhccccccCCCCcceEEecCCCCHHHHHHHHHHcCCcEeeeeeCCCCeEEEEeehHHHHHHHHHHhcCCCCCChhhHhhh
Q 011043 168 STHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETH 247 (495)
Q Consensus 168 ~~~~~~d~~p~s~~vi~l~~~~~v~~A~~~l~e~~i~~~Pv~d~~~~~~vGilt~~Dii~~l~~~~~~~~~l~~~~l~~~ 247 (495)
..-|+-|+|-..+.+..++.+.+.++..+.+...-...+|+|..+..+++||+-..|+++++.+. .++..+.
T Consensus 198 e~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~----~~~~k~d---- 269 (423)
T COG4536 198 ENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEK----NEFTKED---- 269 (423)
T ss_pred ccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhcc----CcccHhH----
Confidence 45678898888899999999999999999999999999999988878899999999999988432 1122221
Q ss_pred hHHHHHHHHhhhccccCCCCcccCCCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHH
Q 011043 248 TISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVC 327 (495)
Q Consensus 248 ~i~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~ 327 (495)
+.. ...++..++..+++.+-+..+.+++-|-..|+ ++-| .+.|++|.+||+.-+.
T Consensus 270 -~~~------------------~a~epyFVPe~Tpl~~QL~~F~~~k~hialVV---DEYG---~i~GLVTLEDIlEEIV 324 (423)
T COG4536 270 -ILR------------------AADEPYFVPEGTPLSDQLVAFQRNKKHIALVV---DEYG---DIQGLVTLEDILEEIV 324 (423)
T ss_pred -HHH------------------HhcCCeecCCCCcHHHHHHHHHHhcceEEEEE---eccC---cEEeeeeHHHHHHHHh
Confidence 111 12467899999999999999999999999999 5778 8999999999999887
Q ss_pred hhhc
Q 011043 328 RYFR 331 (495)
Q Consensus 328 ~~~~ 331 (495)
..+.
T Consensus 325 Gdft 328 (423)
T COG4536 325 GDFT 328 (423)
T ss_pred cccc
Confidence 6654
No 198
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.30 E-value=1.1e-05 Score=81.75 Aligned_cols=110 Identities=11% Similarity=0.236 Sum_probs=88.3
Q ss_pred CceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccccCccc
Q 011043 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 352 (495)
Q Consensus 273 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 352 (495)
..+...++.+..+++..|..++...+.|+ +.++ ++.|.++..++..+.... ..+.+.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~g~~~~~~~~~~~~~~------------~~~~~~----- 307 (363)
T TIGR01186 251 GPITKTADKGPRSALQLMRDERVDSLYVV---DRQN---KLVGVVDVESIKQARKKA------------QGLQDV----- 307 (363)
T ss_pred cceeecCCCCHHHHHHHHHhcCCceEEEE---cCCC---CEEEEEeHHHHHHHhhcC------------Cchhhh-----
Confidence 34456677889999999999999999999 3556 799999999987654321 112222
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhc
Q 011043 353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK 413 (495)
Q Consensus 353 ~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~ 413 (495)
+...+.++.+++++.+++..|.+++.. +||+|++|+++|+||+.+++..+...
T Consensus 308 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~~~ 360 (363)
T TIGR01186 308 -------LIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALYDS 360 (363)
T ss_pred -------hccCCceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHHhh
Confidence 445677899999999999999999988 99999999999999999999876544
No 199
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=98.18 E-value=4.6e-05 Score=70.07 Aligned_cols=116 Identities=13% Similarity=0.168 Sum_probs=94.0
Q ss_pred CCCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccccCc
Q 011043 271 PRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVG 350 (495)
Q Consensus 271 ~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~ 350 (495)
....+++..+.++.+++..|++...+|+||+.. +.. .+.||+-.+|+|+++...... ..++++
T Consensus 76 RSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~e--dkD---~v~GIL~AKDLL~~~~~~~~~---------F~i~~l--- 138 (293)
T COG4535 76 RSQMITLKRNQTLDECLDVIIESAHSRFPVISE--DKD---HVEGILLAKDLLPFMRSDAEP---------FDIKEL--- 138 (293)
T ss_pred HHHheeccccCCHHHHHHHHHHhccccCCcccC--Cch---hhhhhhhHHHHHHHhcCCccc---------ccHHHh---
Confidence 346889999999999999999999999999942 223 699999999999987543211 112222
Q ss_pred ccccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhc
Q 011043 351 TWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK 413 (495)
Q Consensus 351 ~~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~ 413 (495)
-+|.+.++++-.+...++-+..++.+-..|+|+-|-+.|+||..|++...-..
T Consensus 139 ----------LRPav~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEqIVGd 191 (293)
T COG4535 139 ----------LRPAVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQIVGD 191 (293)
T ss_pred ----------cccceecccchhHHHHHHHHHhhcCceEEEEeccCCeeeeEEHHHHHHHHhcc
Confidence 35778899999999999999999988889999999999999999999866443
No 200
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.16 E-value=2.8e-05 Score=79.93 Aligned_cols=106 Identities=12% Similarity=0.177 Sum_probs=85.3
Q ss_pred eCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccccCccccccc
Q 011043 277 AGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKI 356 (495)
Q Consensus 277 v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v 356 (495)
..++.+..+|+..|..++...+.|+ ++++ +++|+++..++.+..... .++.+.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~g~~~~~~~~~~~~~~------------~~~~~~--------- 342 (400)
T PRK10070 290 KTPGFGPRSALKLLQDEDREYGYVI---ERGN---KFVGAVSIDSLKTALTQQ------------QGLDAA--------- 342 (400)
T ss_pred cCCCCCHHHHHHHHHhcCCceEEEE---cCCC---cEEEEEeHHHHHhhhhcC------------Cchhhh---------
Confidence 4467789999999999999999999 4667 899999999997654311 112222
Q ss_pred CCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhc
Q 011043 357 GEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK 413 (495)
Q Consensus 357 ~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~ 413 (495)
+.....++.+++++.+++..+.+.... +||+|++|+++|+|+..++++.+...
T Consensus 343 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~~~ 395 (400)
T PRK10070 343 ---LIDAPLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALDRE 395 (400)
T ss_pred ---hccCCceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHHhc
Confidence 344577899999999999999987765 99999999999999999999876543
No 201
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.88 E-value=4.8e-05 Score=79.03 Aligned_cols=145 Identities=13% Similarity=0.188 Sum_probs=105.3
Q ss_pred CCCcccCCCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhh-ccC-CC--CCccc
Q 011043 265 SHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYF-RHC-SS--SLPIL 340 (495)
Q Consensus 265 ~~g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~-~~~-~~--~~~~l 340 (495)
.++++|.+|++++..-+.+....+.+.....+..||+|..+.+. ..++.|++-.+.++..+.... .+. .. ..+..
T Consensus 583 ~a~ev~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~-~~~l~GlILRshl~vlL~~~~f~~~~~~~~~~~~~ 661 (762)
T KOG0474|consen 583 TAGEVMSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNE-AGRLHGLILRSHLLVLLKKRVFVEESRSTFDLPVR 661 (762)
T ss_pred hHhhhccCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCcc-chhhhHHHHHHHHHHHHHhhhhhccCccccCcchh
Confidence 45789999999999999999999999999999999996422211 127899999999887775432 111 00 00000
Q ss_pred -----------ccccccccCcccc----cccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHH
Q 011043 341 -----------KLPICAIPVGTWV----PKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSD 405 (495)
Q Consensus 341 -----------~~~v~~l~i~~~~----~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~D 405 (495)
..+++++.+.... -.....|++.+.++.+++++..++.++.+-+.+++.||+...+.+|++|++|
T Consensus 662 ~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gilTR~D 741 (762)
T KOG0474|consen 662 RKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGILTRKD 741 (762)
T ss_pred hcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecCCCceeEEEehhh
Confidence 0112222221110 0234567888999999999999999999999999999998888999999999
Q ss_pred HHHHH
Q 011043 406 ITALA 410 (495)
Q Consensus 406 l~~~~ 410 (495)
+...-
T Consensus 742 ~~~~~ 746 (762)
T KOG0474|consen 742 LARYR 746 (762)
T ss_pred hhhHH
Confidence 98643
No 202
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.87 E-value=4.2e-05 Score=62.78 Aligned_cols=65 Identities=23% Similarity=0.248 Sum_probs=51.1
Q ss_pred EEEE-ecCCCceEEEEEccCCCC-----CCCCCCcccCCCCeEEEEEE-eCCceEEEEEEECCE-----EeeCCCCCeee
Q 011043 28 MRFV-WPYGGRSVFLSGSFNRWS-----ELLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVDGE-----WRHDEHQPFIS 95 (495)
Q Consensus 28 ~~f~-~~~~~~~V~v~Gsf~~W~-----~~~~m~~~~~~~~~~~~~~~-l~~g~~~ykf~vdg~-----w~~d~~~~~~~ 95 (495)
++|+ |...|++|.|+. |++|. ..++|.+ +.+|.|++.++ +.+|.+ |+|.|+|. .+.||.+..+.
T Consensus 10 ~~F~vwAP~A~~V~L~l-~~~~~~~~~~~~~~m~~--~~~gvw~~~v~~~~~g~~-Y~y~i~~~~~~~~~~~DPyA~~~~ 85 (100)
T cd02860 10 TTFRLWAPTAQSVKLLL-YDKDDQDKVLETVQMKR--GENGVWSVTLDGDLEGYY-YLYEVKVYKGETNEVVDPYAKALS 85 (100)
T ss_pred EEEEEECCCCcEEEEEE-EcCCCCCCcceeEeeec--CCCCEEEEEeCCccCCcE-EEEEEEEeceEEEEEcCcccEeEe
Confidence 6786 999999999998 88886 3468887 45899999987 555654 88888775 78888887654
Q ss_pred C
Q 011043 96 S 96 (495)
Q Consensus 96 ~ 96 (495)
.
T Consensus 86 ~ 86 (100)
T cd02860 86 A 86 (100)
T ss_pred e
Confidence 3
No 203
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.84 E-value=3.2e-05 Score=64.98 Aligned_cols=53 Identities=26% Similarity=0.454 Sum_probs=47.8
Q ss_pred cCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011043 356 IGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (495)
Q Consensus 356 v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~ 408 (495)
+.++|.+++.++.+++++.++++.|.+.+...+||+|++|+++|+++.+||.+
T Consensus 60 v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~ 112 (113)
T cd04597 60 VRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE 112 (113)
T ss_pred HHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence 44458888899999999999999999999999999998899999999999864
No 204
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=97.79 E-value=0.00018 Score=59.58 Aligned_cols=69 Identities=23% Similarity=0.450 Sum_probs=47.1
Q ss_pred EEEE-ecCCCceEEEEEccCCCCC-CCCCCcccCCCCeEEEEEE-eCCc-eEEEEEEEC-CE--EeeCCCCCeeeCC
Q 011043 28 MRFV-WPYGGRSVFLSGSFNRWSE-LLPMSPVEGCPTVFQIIWS-IPPG-YHQYKFCVD-GE--WRHDEHQPFISSE 97 (495)
Q Consensus 28 ~~f~-~~~~~~~V~v~Gsf~~W~~-~~~m~~~~~~~~~~~~~~~-l~~g-~~~ykf~vd-g~--w~~d~~~~~~~~~ 97 (495)
++|+ |..+|++|.|+++|++|.. ..+|.+.+ ..|.|.+.++ +++| .|.|++..+ |. .+.||...-++.+
T Consensus 23 ~~frv~aP~A~~V~l~~~~~~~~~~~~~m~~~~-~~G~w~~~v~~~~~~~~Y~~~v~~~~g~~~~~~DPYa~~~~~~ 98 (106)
T cd02855 23 VRFAVWAPNARRVSVVGDFNGWDGRRHPMRRRG-DSGVWELFIPGLGEGELYKYEILGADGHLPLKADPYAFYSELR 98 (106)
T ss_pred EEEEEECCCCCEEEEEEECCCCCCcceecEECC-CCCEEEEEECCCCCCCEEEEEEECCCCCEEEeeCCCceeeEeC
Confidence 6677 9999999999999999965 35887642 3799999886 6666 444444433 33 3556665544433
No 205
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=97.72 E-value=5.9e-05 Score=80.42 Aligned_cols=66 Identities=27% Similarity=0.538 Sum_probs=53.1
Q ss_pred eeEEEE-ecCCCceEEEEEccCCCCCC-CCCCcccCCCCeEEEEEE-eCCceEEEEEEECCE-----EeeCCCCCe
Q 011043 26 IPMRFV-WPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVDGE-----WRHDEHQPF 93 (495)
Q Consensus 26 ~~~~f~-~~~~~~~V~v~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~-l~~g~~~ykf~vdg~-----w~~d~~~~~ 93 (495)
-.++|+ |.+.++.|.|.|+||+|... .+|... +..|.|++.++ +++| +.|||.+++. |+.||.+-.
T Consensus 36 ~~~~F~vWAP~a~~V~vvgdfn~w~~~~~~~~~~-~~~G~we~~vp~~~~G-~~Yky~l~~~~g~~~~~~DP~a~~ 109 (628)
T COG0296 36 SGVRFRVWAPNARRVSLVGDFNDWDGRRMPMRDR-KESGIWELFVPGAPPG-TRYKYELIDPSGQLRLKADPYARR 109 (628)
T ss_pred CceEEEEECCCCCeEEEEeecCCccceecccccC-CCCceEEEeccCCCCC-CeEEEEEeCCCCceeeccCchhhc
Confidence 478898 99999999999999999984 355433 25699999999 9999 9999999653 366666544
No 206
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.69 E-value=8.6e-05 Score=62.32 Aligned_cols=50 Identities=20% Similarity=0.402 Sum_probs=45.1
Q ss_pred ccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHH
Q 011043 441 LRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 491 (495)
Q Consensus 441 ~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~ 491 (495)
+|.+++.++.+++++.++++.|...+.+.+||+|+ +|+++|+||..||.+
T Consensus 63 im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~~~l~Givt~~dl~~ 112 (113)
T cd04597 63 VINRKPVTARPNDPLREALNLMHEHNIRTLPVVDD-DGTPAGIITLLDLAE 112 (113)
T ss_pred hcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECC-CCeEEEEEEHHHhhc
Confidence 44667889999999999999999999999999994 689999999999864
No 207
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=97.67 E-value=0.00012 Score=59.53 Aligned_cols=56 Identities=25% Similarity=0.554 Sum_probs=45.0
Q ss_pred eeEEEEe---cCCCceEEEEEccC---CCCC--CCCCCcccC--CCCeEEEEEEeCCc-eEEEEEEE
Q 011043 26 IPMRFVW---PYGGRSVFLSGSFN---RWSE--LLPMSPVEG--CPTVFQIIWSIPPG-YHQYKFCV 81 (495)
Q Consensus 26 ~~~~f~~---~~~~~~V~v~Gsf~---~W~~--~~~m~~~~~--~~~~~~~~~~l~~g-~~~ykf~v 81 (495)
+.++|.- ...++.|+|+||.. +|++ .++|...++ ....|++++.||.| .++|||++
T Consensus 2 v~V~F~v~~~~~~ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~~~eYKy~i 68 (96)
T PF00686_consen 2 VSVTFRVNYQTQPGESVYIVGSCPELGNWDPKKAVPLQWNEGTENYPIWSATVDLPAGTPFEYKYVI 68 (96)
T ss_dssp EEEEEEESE---TTEEEEEEESSGGGTTTSGGGSBESEBESSSSTTTSEEEEEEEETTSEEEEEEEE
T ss_pred EEEEEEEEeECCCCCEEEEEECcHHhCCCChHhccccccccCCCCCCeEEEEEECcCCCEEEEEEEE
Confidence 5677774 33489999999998 8997 468887543 56899999999998 79999999
No 208
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.65 E-value=0.00014 Score=49.79 Aligned_cols=47 Identities=38% Similarity=0.578 Sum_probs=42.7
Q ss_pred ceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHh
Q 011043 446 CQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 493 (495)
Q Consensus 446 ~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l 493 (495)
+.++.+++++.++++.|.+.+.+.+||+++ +++++|+++..++++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDE-EGRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECC-CCeEEEEEEHHHHHHhh
Confidence 567899999999999999999999999995 58999999999998875
No 209
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.58 E-value=0.00023 Score=58.70 Aligned_cols=53 Identities=23% Similarity=0.325 Sum_probs=41.9
Q ss_pred EEEE-ecCCCceEEEEEccCCCC--CCCCCCcccCCCCeEEEEEE-eCCceEEEEEEECCE
Q 011043 28 MRFV-WPYGGRSVFLSGSFNRWS--ELLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVDGE 84 (495)
Q Consensus 28 ~~f~-~~~~~~~V~v~Gsf~~W~--~~~~m~~~~~~~~~~~~~~~-l~~g~~~ykf~vdg~ 84 (495)
++|+ |...|++|.|+. |++|. ..++|.+. .+|+|.+.+. +.+|. .|+|.|||.
T Consensus 11 ~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~--~~GvW~~~v~~~~~g~-~Y~y~i~g~ 67 (103)
T cd02856 11 CNFAVHSENATRIELCL-FDEDGSETRLPLTEE--YGGVWHGFLPGIKAGQ-RYGFRVHGP 67 (103)
T ss_pred eEEEEECCCCCEEEEEE-EeCCCCEEEEEcccc--cCCEEEEEECCCCCCC-EEEEEECCc
Confidence 5676 999999999999 66664 34688774 4799999985 56665 799999993
No 210
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=97.57 E-value=0.00018 Score=78.75 Aligned_cols=64 Identities=23% Similarity=0.411 Sum_probs=49.4
Q ss_pred eEEEE-ecCCCceEEEEEccCCCCCC-CCCCcccCCCCeEEEEEEe-------CCceEEEEEEEC---CE--EeeCCCCC
Q 011043 27 PMRFV-WPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWSI-------PPGYHQYKFCVD---GE--WRHDEHQP 92 (495)
Q Consensus 27 ~~~f~-~~~~~~~V~v~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~l-------~~g~~~ykf~vd---g~--w~~d~~~~ 92 (495)
-++|+ |.+.|++|+|+|+||+|... .+|.+. ..|+|++.++- +.| ..|||.|. |. ++.||-+.
T Consensus 115 g~~FrvWAP~A~~V~LvGdFN~W~~~~~~M~~~--~~GvWe~~ip~~~g~~~~~~G-~~Yky~i~~~~g~~~~r~dpya~ 191 (758)
T PLN02447 115 GITYREWAPGAKAAALIGDFNNWNPNAHWMTKN--EFGVWEIFLPDADGSPAIPHG-SRVKIRMETPDGRWVDRIPAWIK 191 (758)
T ss_pred CEEEEEECCCCCEEEEEEecCCCCCCccCceeC--CCCEEEEEECCccccccCCCC-CEEEEEEEeCCCcEEeecCchHh
Confidence 57888 99999999999999999874 589874 47999999873 334 36777773 54 57787665
Q ss_pred e
Q 011043 93 F 93 (495)
Q Consensus 93 ~ 93 (495)
.
T Consensus 192 ~ 192 (758)
T PLN02447 192 Y 192 (758)
T ss_pred e
Confidence 3
No 211
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.54 E-value=0.00029 Score=48.14 Aligned_cols=47 Identities=30% Similarity=0.543 Sum_probs=42.1
Q ss_pred ceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 011043 364 LAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA 410 (495)
Q Consensus 364 ~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~ 410 (495)
+.++.+++++.++++.|.+.+.+.+||++++++++|+++..++.+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHhh
Confidence 45678899999999999999999999999889999999999997653
No 212
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo
Probab=97.54 E-value=0.00071 Score=54.83 Aligned_cols=53 Identities=23% Similarity=0.466 Sum_probs=41.2
Q ss_pred eEEEEec---CCCceEEEEEc---cCCCCCC--CCCCcccCCCCeEEEEEEeCCc-eEEEEEEE
Q 011043 27 PMRFVWP---YGGRSVFLSGS---FNRWSEL--LPMSPVEGCPTVFQIIWSIPPG-YHQYKFCV 81 (495)
Q Consensus 27 ~~~f~~~---~~~~~V~v~Gs---f~~W~~~--~~m~~~~~~~~~~~~~~~l~~g-~~~ykf~v 81 (495)
+++|.-+ ..|++|+|+|+ |.+|++. ++|... ..+.|++++.||++ .++|||++
T Consensus 2 ~v~F~v~~~t~~ge~l~v~G~~~~lG~W~~~~a~~l~~~--~~~~W~~~v~l~~~~~~eYKy~~ 63 (95)
T cd05808 2 AVTFNVTATTVWGQNVYVVGNVPELGNWSPANAVALSAA--TYPVWSGTVDLPAGTAIEYKYIK 63 (95)
T ss_pred eEEEEEEEECCCCCEEEEEeCcHHhCCCChhhCccCCCC--CCCCEEEEEEeCCCCeEEEEEEE
Confidence 4555532 34789999995 7799864 588764 46889999999987 79999997
No 213
>PRK12568 glycogen branching enzyme; Provisional
Probab=97.50 E-value=0.00028 Score=77.00 Aligned_cols=65 Identities=25% Similarity=0.537 Sum_probs=51.3
Q ss_pred eEEEE-ecCCCceEEEEEccCCCCCC-CCCCcccCCCCeEEEEEE-eCCceEEEEEEE---CCEE--eeCCCCCee
Q 011043 27 PMRFV-WPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWS-IPPGYHQYKFCV---DGEW--RHDEHQPFI 94 (495)
Q Consensus 27 ~~~f~-~~~~~~~V~v~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~-l~~g~~~ykf~v---dg~w--~~d~~~~~~ 94 (495)
-++|+ |.+.|++|+|+|+||+|... .||.+. ..|+|++.++ +.+| ..|||.| ||+| +.||-+...
T Consensus 139 Gv~FaVWAPnA~~VsVvGDFN~Wdg~~~pM~~~--~~GVWelfipg~~~G-~~YKYeI~~~~G~~~~k~DPYA~~~ 211 (730)
T PRK12568 139 GVRFAVWAPHAQRVAVVGDFNGWDVRRHPMRQR--IGGFWELFLPRVEAG-ARYKYAITAADGRVLLKADPVARQT 211 (730)
T ss_pred cEEEEEECCCCCEEEEEEecCCCCccceecccC--CCCEEEEEECCCCCC-CEEEEEEEcCCCeEeecCCCcceEe
Confidence 57887 99999999999999999864 588764 5899999985 6666 4577777 7865 468777654
No 214
>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=97.48 E-value=0.00088 Score=56.91 Aligned_cols=57 Identities=21% Similarity=0.449 Sum_probs=43.5
Q ss_pred eeEEEEec--CCCceEEEEEc---cCCCCCC--CCCCcccCCCCeEEEEEEeCCc-eEEEEEEEC
Q 011043 26 IPMRFVWP--YGGRSVFLSGS---FNRWSEL--LPMSPVEGCPTVFQIIWSIPPG-YHQYKFCVD 82 (495)
Q Consensus 26 ~~~~f~~~--~~~~~V~v~Gs---f~~W~~~--~~m~~~~~~~~~~~~~~~l~~g-~~~ykf~vd 82 (495)
+++.+..+ ..++.|+|+|+ +.+|++. .+|.+.....+.|++.+.||++ .++|||++.
T Consensus 3 v~F~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~l~~~~~~~~~W~~~v~lp~~~~veYkY~~~ 67 (120)
T cd05814 3 VTFRVFASELAPGEVVAVVGSLPVLGNWQPEKAVPLEKEDDDCNLWKASIELPRGVDFQYRYFVA 67 (120)
T ss_pred EEEEEeeccCCCCCEEEEEeChHHhCCCCHHhCeeCccCCCcCCccEEEEEECCCCeEEEEEEEE
Confidence 34444443 35889999999 8899853 5887652246889999999998 899999994
No 215
>PRK12313 glycogen branching enzyme; Provisional
Probab=97.35 E-value=0.00057 Score=74.96 Aligned_cols=67 Identities=21% Similarity=0.370 Sum_probs=50.5
Q ss_pred eEEEE-ecCCCceEEEEEccCCCCCC-CCCCcccCCCCeEEEEEE-eCCc-eEEEEEEE-CCEE--eeCCCCCeee
Q 011043 27 PMRFV-WPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWS-IPPG-YHQYKFCV-DGEW--RHDEHQPFIS 95 (495)
Q Consensus 27 ~~~f~-~~~~~~~V~v~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~-l~~g-~~~ykf~v-dg~w--~~d~~~~~~~ 95 (495)
.++|+ |.++|++|+|+|+||+|... .+|.+. ..|+|++.++ +.+| .|+|++.. +|.| +.||......
T Consensus 39 gv~Frv~AP~A~~V~v~gdfn~w~~~~~~m~~~--~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~DPya~~~~ 112 (633)
T PRK12313 39 GTYFRVWAPNAQAVSVVGDFNDWRGNAHPLVRR--ESGVWEGFIPGAKEGQLYKYHISRQDGYQVEKIDPFAFYFE 112 (633)
T ss_pred cEEEEEECCCCCEEEEEEecCCCCccccccccc--CCCEEEEEeCCCCCCCEEEEEEECCCCeEEecCCCceEEEe
Confidence 57887 99999999999999999875 588874 5799999998 4444 56666644 5665 5676665543
No 216
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.31 E-value=0.0018 Score=67.78 Aligned_cols=124 Identities=13% Similarity=0.221 Sum_probs=87.6
Q ss_pred ceeecCC-CCHHHHHHHHHHCCCCEEEEEc--CCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHH-cCCCC----
Q 011043 364 LAMLRPS-ASLSAALNLLVQAQVSSIPIVD--DNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQ-LGQDS---- 435 (495)
Q Consensus 364 ~~~v~~~-~sl~~a~~~m~~~~~~~lpVvd--~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~-~~~~~---- 435 (495)
+..+..+ .++.+...+|.+...+.+||+= +..+++|++.++++.......... .+..+..-+. .+...
T Consensus 558 L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~----q~~~~~~~~~f~~~~~~~~~ 633 (696)
T KOG0475|consen 558 LIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKI----QSFIVTTSIYFNDPSPSAVA 633 (696)
T ss_pred heeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccc----cccceecccccCCCCccccC
Confidence 5555554 7999999999999999899883 356899999999987543211100 0111111000 00000
Q ss_pred C--CC---ccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHh
Q 011043 436 Y--SP---YELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 493 (495)
Q Consensus 436 ~--~~---~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l 493 (495)
. .+ .++|.-.+.++....+...+++++.+-+++.+.|.. +|++.|+||..|++++.
T Consensus 634 ~~~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~--~G~l~Giitkkd~l~~~ 694 (696)
T KOG0475|consen 634 GIPSRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVTK--NGILLGIITKKDCLRHT 694 (696)
T ss_pred CCCCCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEcc--CCeeEeeeehHHHHHhh
Confidence 0 11 136777899999999999999999999999988776 69999999999999864
No 217
>PRK14706 glycogen branching enzyme; Provisional
Probab=97.30 E-value=0.00071 Score=73.69 Aligned_cols=65 Identities=31% Similarity=0.630 Sum_probs=50.6
Q ss_pred eEEEE-ecCCCceEEEEEccCCCCCC-CCCCcccCCCCeEEEEEEe-CCceEEEEEEECC---EE--eeCCCCCee
Q 011043 27 PMRFV-WPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWSI-PPGYHQYKFCVDG---EW--RHDEHQPFI 94 (495)
Q Consensus 27 ~~~f~-~~~~~~~V~v~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~l-~~g~~~ykf~vdg---~w--~~d~~~~~~ 94 (495)
-++|+ |.+.|++|+|+|+||+|... .||.+.+ .|.|++.++. .+| ..|||.|++ .+ +.||-+...
T Consensus 39 Gv~FrvwAP~A~~V~Lvgdfn~w~~~~~pM~~~~--~GvW~~~vpg~~~g-~~Yky~I~~~~g~~~~~~DPYa~~~ 111 (639)
T PRK14706 39 GVRFAVWAPGAQHVSVVGDFNDWNGFDHPMQRLD--FGFWGAFVPGARPG-QRYKFRVTGAAGQTVDKMDPYGSFF 111 (639)
T ss_pred cEEEEEECCCCCEEEEEEecCCcccccccccccC--CCEEEEEECCCCCC-CEEEEEEECCCCCEEeccCcceEEE
Confidence 47887 99999999999999999874 5898753 6999999864 444 468888854 33 677777654
No 218
>cd05818 CBM20_water_dikinase Phosphoglucan water dikinase (also known as alpha-glucan water dikinase), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in the chloroplast-encoded phosphoglucan water dikinase, one of two enzymes involved in the phosphorylation of plant starches. In addition to the CBM20 domain, phosphoglucan water dikinase contains a C-terminal pyruvate binding domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=97.29 E-value=0.0016 Score=52.53 Aligned_cols=53 Identities=21% Similarity=0.355 Sum_probs=42.0
Q ss_pred eeEEEEecC---CCceEEEEEccC---CCCCCCCCCcccCCCCeEEEEEEeCCc-eEEEEEEE
Q 011043 26 IPMRFVWPY---GGRSVFLSGSFN---RWSELLPMSPVEGCPTVFQIIWSIPPG-YHQYKFCV 81 (495)
Q Consensus 26 ~~~~f~~~~---~~~~V~v~Gsf~---~W~~~~~m~~~~~~~~~~~~~~~l~~g-~~~ykf~v 81 (495)
+.++|.-.+ -|++++|+|+-. +|++..+|... .+.|++.+.||++ .++|||++
T Consensus 2 ~~v~F~~~~~~~~Gq~l~v~G~~~~LG~W~~~~~l~~~---~~~W~~~~~l~~~~~ieyKy~~ 61 (92)
T cd05818 2 VKLQVRLDHQVKFGEHVAILGSTKELGSWKKKVPMNWT---ENGWVCDLELDGGELVEYKFVI 61 (92)
T ss_pred EEEEEEEEEEcCCCCEEEEEeChHHHCCCCCCCccccC---CCCEEEEEEeCCCCcEEEEEEE
Confidence 456666443 388999999875 89987778664 4669999999987 89999998
No 219
>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Beta-amylase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 14, which hydrolyzes the alpha-1,4-glucosidic bonds of starch, yielding beta-maltose from the nonreducing end of the substrate. Beta-amylase is found in both plants and microorganisms, however the plant members lack a C-terminal CBM20 domain and are not included in this group. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1
Probab=97.24 E-value=0.0023 Score=52.34 Aligned_cols=57 Identities=19% Similarity=0.395 Sum_probs=42.9
Q ss_pred eeeEEEEecC----CCceEEEEE---ccCCCCCCC-CCCccc-CCCCeEEEEEEeCCc-eEEEEEEE
Q 011043 25 LIPMRFVWPY----GGRSVFLSG---SFNRWSELL-PMSPVE-GCPTVFQIIWSIPPG-YHQYKFCV 81 (495)
Q Consensus 25 ~~~~~f~~~~----~~~~V~v~G---sf~~W~~~~-~m~~~~-~~~~~~~~~~~l~~g-~~~ykf~v 81 (495)
.||++|.-.. .|++|+|+| ++.+|+... +|.... ...+.|++.+.||+| .++|||++
T Consensus 2 ~v~v~f~v~~~~t~~G~~v~v~Gs~~~LG~W~~~~~~~~~~~~~~~~~W~~~~~lp~~~~veyKyv~ 68 (99)
T cd05809 2 PVPQTFVVKNVPTTIGETVYITGSRAELGNWDTKQYPIQLYYNSHSNDWRGTVHLPAGRNIEFKAIK 68 (99)
T ss_pred ceEEEEEEcccccCCCCEEEEEeChHHhCCCChhhhhhccccCCCCCCEEEEEEecCCCcEEEEEEE
Confidence 3789998532 378999999 677998642 343321 235789999999998 79999999
No 220
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=97.22 E-value=0.0033 Score=64.30 Aligned_cols=84 Identities=19% Similarity=0.305 Sum_probs=64.2
Q ss_pred CCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCCCCccccCCcceEecCCCCHHHHHHHH
Q 011043 383 AQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERL 462 (495)
Q Consensus 383 ~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~m~~~~~~v~~~~tL~~a~~~m 462 (495)
++.+.+.|+|. |+++..+...+.+... ..++.+ + .....+++++++|.+++..+
T Consensus 298 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-------~~~~~~-~-------------~~~~~~~~~~~~~~~~~~~~ 351 (382)
T TIGR03415 298 RRDTWLFTIDK-----QVRRRDAKLPVQAWAA-------EQEVES-L-------------EAAPTVINPDTLMRDVLAAR 351 (382)
T ss_pred cccceeEeecc-----ceecccchHhHhhccc-------ccchhh-h-------------cccCcccCCCCcHHHHHHHH
Confidence 78889999985 8888888665443211 123333 2 23577899999999999999
Q ss_pred HcCCCcEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 011043 463 ANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 495 (495)
Q Consensus 463 ~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l~~ 495 (495)
.+.+. -++|+| + |+++|+|+..+|+.+|.+
T Consensus 352 ~~~~~-~~~v~~-~-~~~~g~~~~~~~~~~~~~ 381 (382)
T TIGR03415 352 HRTGG-AILLVE-N-GRIVGVIGDDNIYHALLG 381 (382)
T ss_pred hcCCC-CeEEee-C-CeEEEEEeHHHHHHHHhc
Confidence 98876 488998 3 999999999999999864
No 221
>PRK14705 glycogen branching enzyme; Provisional
Probab=97.21 E-value=0.00066 Score=78.07 Aligned_cols=64 Identities=27% Similarity=0.598 Sum_probs=49.9
Q ss_pred eEEEE-ecCCCceEEEEEccCCCCCC-CCCCcccCCCCeEEEEEE-eCCceEEEEEEEC---CEE--eeCCCCC
Q 011043 27 PMRFV-WPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVD---GEW--RHDEHQP 92 (495)
Q Consensus 27 ~~~f~-~~~~~~~V~v~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~-l~~g~~~ykf~vd---g~w--~~d~~~~ 92 (495)
-++|. |.+.|++|+|+|+||+|... .+|.+. ...|+|++.++ +.+|. .|||.|. |.| +.||-+.
T Consensus 639 Gv~F~VWAP~A~~V~vvgdFN~w~~~~~~m~~~-~~~GvW~~fipg~~~G~-~Yky~i~~~~g~~~~k~DPyA~ 710 (1224)
T PRK14705 639 GVSFAVWAPNAQAVRVKGDFNGWDGREHSMRSL-GSSGVWELFIPGVVAGA-CYKFEILTKAGQWVEKADPLAF 710 (1224)
T ss_pred eEEEEEECCCCCEEEEEEEecCCCCCcccceEC-CCCCEEEEEECCCCCCC-EEEEEEEcCCCcEEecCCcccc
Confidence 57888 99999999999999999864 588763 34799999985 77885 6888884 544 5666554
No 222
>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Novamyl has a five-domain structure similar to that of cyclodextrin glucanotransferase (CGTase). Novamyl has a substrate-binding surface with an open groove which can accommodate both cyclodextrins and linear substrates. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific reco
Probab=97.17 E-value=0.004 Score=51.28 Aligned_cols=54 Identities=30% Similarity=0.535 Sum_probs=43.5
Q ss_pred eeEEEEecC-----CCceEEEEEccC---CCCCCC-----CCCcccCCCCeEEEEEEeCCc-eEEEEEEE
Q 011043 26 IPMRFVWPY-----GGRSVFLSGSFN---RWSELL-----PMSPVEGCPTVFQIIWSIPPG-YHQYKFCV 81 (495)
Q Consensus 26 ~~~~f~~~~-----~~~~V~v~Gsf~---~W~~~~-----~m~~~~~~~~~~~~~~~l~~g-~~~ykf~v 81 (495)
||++|+-.. -|++++|+|+-. +|+... +|.. .....|++++.||+| ..+|||++
T Consensus 3 ~~v~f~~~~~~~t~~Ge~l~vvGs~~~LG~W~~~~~~a~~~l~~--~~~~~W~~~~~lp~~~~veyK~v~ 70 (103)
T cd05820 3 IPVIFTVQNTPETAPGEFLYLTGSVPELGNWSTSTDQAVGPLLC--PNWPDWFVVASVPAGTYIEFKFLK 70 (103)
T ss_pred ccEEEEEeCCcCcCCCCEEEEEECcHHhCCCChhcccccccccc--CCCCCEEEEEEcCCCCcEEEEEEE
Confidence 899999753 378999999877 898732 5654 345789999999998 79999998
No 223
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.17 E-value=0.0011 Score=56.16 Aligned_cols=59 Identities=20% Similarity=0.399 Sum_probs=44.6
Q ss_pred EEEE-ecCCCceEEEEEccCCCC---C--CCCCCccc-CCCCeEEEEEE-eCCceEEEEEEECCEEeeC
Q 011043 28 MRFV-WPYGGRSVFLSGSFNRWS---E--LLPMSPVE-GCPTVFQIIWS-IPPGYHQYKFCVDGEWRHD 88 (495)
Q Consensus 28 ~~f~-~~~~~~~V~v~Gsf~~W~---~--~~~m~~~~-~~~~~~~~~~~-l~~g~~~ykf~vdg~w~~d 88 (495)
++|+ |...|++|.|+. |++|+ + .++|.+.+ +.+|+|++.++ +.+|. .|+|.|+|.|.-+
T Consensus 9 ~~F~vwAP~A~~V~L~l-f~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~~~~~g~-~Y~y~v~g~~~p~ 75 (119)
T cd02852 9 VNFSVYSSNATAVELLL-FDPGDGDEPALEIELDPSVNRTGDVWHVFVEGLKPGQ-LYGYRVDGPFEPE 75 (119)
T ss_pred EEEEEECCCCCEEEEEE-EeCCCCCCceEEEeCcCcccccCCEEEEEECCCCCCC-EEEEEECCCCCCC
Confidence 6786 999999999999 88886 2 34676532 23699999986 66775 7999999875433
No 224
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.16 E-value=0.0018 Score=62.94 Aligned_cols=168 Identities=17% Similarity=0.244 Sum_probs=110.3
Q ss_pred CCCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccccCc
Q 011043 271 PRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVG 350 (495)
Q Consensus 271 ~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~ 350 (495)
.+.++.+. ..|.+|+++ -+++.++ ++| +++.+=|..+|+..-.+.+-. -+-+.+....+
T Consensus 215 ~KTIvFit--HDLdEAlri-----G~rIaim----kdG---~ivQ~Gtp~eIl~~PAndYV~------~Fv~~v~~~~V- 273 (386)
T COG4175 215 KKTIVFIT--HDLDEALRI-----GDRIAIM----KDG---EIVQVGTPEEILLNPANDYVR------DFVRNVDRSRV- 273 (386)
T ss_pred CCeEEEEe--cCHHHHHhc-----cceEEEe----cCC---eEEEeCCHHHHHcCccHHHHH------HHHhcCChhhe-
Confidence 44555553 457777764 3678888 678 899999999998533221100 00000000000
Q ss_pred ccccccCCCCCC--CceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHH
Q 011043 351 TWVPKIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQA 428 (495)
Q Consensus 351 ~~~~~v~~~m~~--~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~ 428 (495)
-+++++|.+ ....-.+...-..+++.+.....+.+.+++..++.+|+++..++....
T Consensus 274 ---ltA~~IM~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~------------------ 332 (386)
T COG4175 274 ---LTAKDIMRRPDLLIRKTPGDGPRVALKLLRDEGREYGYAVDRGNKFVGVVSIDSLVKAA------------------ 332 (386)
T ss_pred ---eeHHHhhcccccccccccccccchhhhhhhhccchhhHHHhccCceeeEEeccchhccc------------------
Confidence 022334553 222222333445677888888877888888778899999998877630
Q ss_pred HHcCCCCCCCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 011043 429 LQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 495 (495)
Q Consensus 429 l~~~~~~~~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l~~ 495 (495)
+ ..++.++..++++.+.+..+.+... .++||| ++++++|+|+...++.+|.+
T Consensus 333 ~-------------~~~~~~v~~d~~~~~~~~~~~~~~~-p~aVvd-e~~r~vG~i~~~~vl~aL~~ 384 (386)
T COG4175 333 L-------------IDDVLTVDADTPLSEILARIRQAPC-PVAVVD-EDGRYVGIISRGELLEALAR 384 (386)
T ss_pred c-------------cccccccCccchHHHHHHHHhcCCC-ceeEEc-CCCcEEEEecHHHHHHHHhc
Confidence 0 2357778899999999998888876 488999 48999999999999999864
No 225
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.06 E-value=0.002 Score=51.02 Aligned_cols=61 Identities=23% Similarity=0.273 Sum_probs=46.4
Q ss_pred EEEE-ecCCCceEEEEEccCCCCCCCCCCcccCCCCeEEEEEEeCCceEEEEEEEC-CEEeeCCCCCee
Q 011043 28 MRFV-WPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVD-GEWRHDEHQPFI 94 (495)
Q Consensus 28 ~~f~-~~~~~~~V~v~Gsf~~W~~~~~m~~~~~~~~~~~~~~~l~~g~~~ykf~vd-g~w~~d~~~~~~ 94 (495)
++|. |...|++|.|+... |. ..+|.+. .+|.|++.+...+|. .|+|.|+ +..+.||.+...
T Consensus 10 ~~F~vwAP~A~~V~l~l~~--~~-~~~m~~~--~~G~W~~~v~~~~g~-~Y~y~v~~~~~~~DP~a~~~ 72 (85)
T cd02853 10 TRFRLWAPDAKRVTLRLDD--GE-EIPMQRD--GDGWFEAEVPGAAGT-RYRYRLDDGTPVPDPASRFQ 72 (85)
T ss_pred EEEEEeCCCCCEEEEEecC--CC-cccCccC--CCcEEEEEeCCCCCC-eEEEEECCCcCCCCCccccC
Confidence 6777 99999999999743 54 4789874 479999998643665 4777776 468888888753
No 226
>cd05811 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-glucosidase), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Glucoamylases are inverting, exo-acting starch hydrolases that hydrolyze starch and related polysaccharides by releasing the nonreducing end glucose. They are mainly active on alpha-1,4-glycosidic bonds but also have some activity towards 1,6-glycosidic bonds occurring in natural oligosaccharides. The ability of glucoamylases to cleave 1-6-glycosidic binds is called "debranching activity" and is of importance in industrial applications, where complete degradation of starch to glucose is needed. Most glucoamylases are multidomain proteins containing an N-terminal catalytic domain, a C-terminal CBM20 domain, and a highly O-glycosylated linker region that connects the two. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also
Probab=96.96 E-value=0.009 Score=49.43 Aligned_cols=58 Identities=19% Similarity=0.431 Sum_probs=43.4
Q ss_pred ceeeEEEEec---CCCceEEEEEccC---CCCCC--CCCCccc--CCCCeEEEEEEeCCc-eEEEEEEE
Q 011043 24 VLIPMRFVWP---YGGRSVFLSGSFN---RWSEL--LPMSPVE--GCPTVFQIIWSIPPG-YHQYKFCV 81 (495)
Q Consensus 24 ~~~~~~f~~~---~~~~~V~v~Gsf~---~W~~~--~~m~~~~--~~~~~~~~~~~l~~g-~~~ykf~v 81 (495)
..++++|.-. ..|+.|+|+|+-. +|++. ++|.... ...+.|++.+.||++ .++|||++
T Consensus 5 ~~v~V~F~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~t~~~~~W~~~v~lp~~~~veYKy~~ 73 (106)
T cd05811 5 TTVAVTFNERVTTSYGENIKIVGSIPQLGNWDTSSAVALSASQYTSSNPLWSVTIPLPAGTSFEYKFIR 73 (106)
T ss_pred CEEEEEEEEeeEcCCCCeEEEEeCcHHHCCCChhhCcccccccCccCCCcEEEEEEeCCCCcEEEEEEE
Confidence 4477888643 3489999999876 79863 5775421 135789999999988 69999997
No 227
>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.94 E-value=0.0033 Score=50.99 Aligned_cols=53 Identities=19% Similarity=0.402 Sum_probs=41.1
Q ss_pred eEEEE--ec--CCCceEEEEEccC---CCCCCCCCCcccCCCCeEEEEEEeCCc-eEEEEEEE
Q 011043 27 PMRFV--WP--YGGRSVFLSGSFN---RWSELLPMSPVEGCPTVFQIIWSIPPG-YHQYKFCV 81 (495)
Q Consensus 27 ~~~f~--~~--~~~~~V~v~Gsf~---~W~~~~~m~~~~~~~~~~~~~~~l~~g-~~~ykf~v 81 (495)
+++|. ++ .+++.++|+|+-. +|+...+|... ..+.|++.+.||++ .++|||++
T Consensus 2 ~v~F~v~~~t~~~~e~l~v~G~~~~LG~W~~~~~l~~~--~~~~W~~~v~lp~~~~ieYky~~ 62 (95)
T cd05813 2 NVTFRVHYITHSDAQLVAVTGDHEELGSWHSYIPLQYV--KDGFWSASVSLPVDTHVEWKFVL 62 (95)
T ss_pred eEEEEEEeeeCCCCeEEEEEcChHHHCCCCccccCcCC--CCCCEEEEEEecCCCcEEEEEEE
Confidence 44554 44 3467889999876 79887899764 35789999999998 59999998
No 228
>PRK05402 glycogen branching enzyme; Provisional
Probab=96.85 E-value=0.0029 Score=70.48 Aligned_cols=68 Identities=25% Similarity=0.475 Sum_probs=50.3
Q ss_pred eEEEE-ecCCCceEEEEEccCCCCCC-CCCCcccCCCCeEEEEEE-eCCc-eEEEEEEEC-CEE--eeCCCCCeee
Q 011043 27 PMRFV-WPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWS-IPPG-YHQYKFCVD-GEW--RHDEHQPFIS 95 (495)
Q Consensus 27 ~~~f~-~~~~~~~V~v~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~-l~~g-~~~ykf~vd-g~w--~~d~~~~~~~ 95 (495)
-++|+ |.+.|++|+|+|+||+|... .+|.+. ...|.|++.++ +++| .|.|++..+ |.| +.||-...+.
T Consensus 132 gv~FrvwAP~A~~V~l~gdfn~w~~~~~~m~~~-~~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~DPYa~~~~ 206 (726)
T PRK05402 132 GVRFAVWAPNARRVSVVGDFNGWDGRRHPMRLR-GESGVWELFIPGLGEGELYKFEILTADGELLLKADPYAFAAE 206 (726)
T ss_pred cEEEEEECCCCCEEEEEEEcCCCCCccccceEc-CCCCEEEEEeCCCCCCCEEEEEEeCCCCcEeecCCCceEEEe
Confidence 57888 99999999999999999864 588874 25799999985 5666 666666654 454 5666555443
No 229
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=96.82 E-value=0.018 Score=60.61 Aligned_cols=133 Identities=12% Similarity=0.123 Sum_probs=92.2
Q ss_pred CceeeCCC-CcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCC---CCccccccccccc
Q 011043 273 PLVYAGPN-DNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSS---SLPILKLPICAIP 348 (495)
Q Consensus 273 ~~i~v~~~-~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~---~~~~l~~~v~~l~ 348 (495)
+++.+..+ +++.|...+|.+...+..||+-+ .+.. .++|++..+++...+......... .......+..+..
T Consensus 557 ~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~-~~sq---~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~f~~~~~~~~ 632 (696)
T KOG0475|consen 557 CLIVITQDSMTLEDLESLMEDTDFSGFPVVLS-EDSQ---RLVGFVLRRNLFLAILNARKIQSFIVTTSIYFNDPSPSAV 632 (696)
T ss_pred hheeccccceeHHHHHHHHhhcccCCceEEEc-cccc---eeEEEEchHHHHHHHhhhccccccceecccccCCCCcccc
Confidence 46666655 89999999999999999999842 3344 799999999998776532111000 0001112222111
Q ss_pred Ccccc-cccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 011043 349 VGTWV-PKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA 410 (495)
Q Consensus 349 i~~~~-~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~ 410 (495)
-+... -..+++|...+.++...++..-+++++.+-+.+.+.|. ++|++.|+||.+|+++..
T Consensus 633 ~~~~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~-~~G~l~Giitkkd~l~~~ 694 (696)
T KOG0475|consen 633 AGIPSRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVT-KNGILLGIITKKDCLRHT 694 (696)
T ss_pred CCCCCCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEc-cCCeeEeeeehHHHHHhh
Confidence 11111 13345677788999999999999999999999888765 689999999999998764
No 230
>cd05807 CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. CGTase, also known as cyclodextrin glycosyltransferase and cyclodextrin glucanotransferase, catalyzes the formation of various cyclodextrins (alpha-1,4-glucans) from starch. CGTase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13 and an IPT domain of unknown function. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific
Probab=96.69 E-value=0.01 Score=48.68 Aligned_cols=57 Identities=25% Similarity=0.317 Sum_probs=42.2
Q ss_pred eeeEEEEec-C---CCceEEEEEccC---CCCCCC--CCC-c-ccCCCCeEEEEEEeCCc-eEEEEEEE
Q 011043 25 LIPMRFVWP-Y---GGRSVFLSGSFN---RWSELL--PMS-P-VEGCPTVFQIIWSIPPG-YHQYKFCV 81 (495)
Q Consensus 25 ~~~~~f~~~-~---~~~~V~v~Gsf~---~W~~~~--~m~-~-~~~~~~~~~~~~~l~~g-~~~ykf~v 81 (495)
.++++|.-. . .|++|+|+|+-. +|++.. .|. . .......|++.+.||+| .++|||++
T Consensus 2 ~v~v~f~v~~~~t~~Gq~l~v~Gs~~~LG~W~~~~a~~~~~~~~~~~~~~W~~~~~lp~~~~~eyK~~~ 70 (101)
T cd05807 2 QVSVRFVVNNATTQLGENVYLVGNVHELGNWDPSKAIGPFFNQVVYQYPNWYYDVSVPAGTTIEFKFIK 70 (101)
T ss_pred cEEEEEEEeccccCCCCEEEEEECHHHHCCCChHHccccccccCCCcCCcEEEEEEcCCCCcEEEEEEE
Confidence 378888853 2 379999999877 898642 232 1 11245689999999998 79999998
No 231
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=96.58 E-value=0.0038 Score=67.07 Aligned_cols=61 Identities=25% Similarity=0.314 Sum_probs=49.8
Q ss_pred EEEE-ecCCCceEEEEEccCCCCCCCCCCcccCCCCeEEEEEE-eCCceEEEEEEECC-EEeeCCCCCeee
Q 011043 28 MRFV-WPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVDG-EWRHDEHQPFIS 95 (495)
Q Consensus 28 ~~f~-~~~~~~~V~v~Gsf~~W~~~~~m~~~~~~~~~~~~~~~-l~~g~~~ykf~vdg-~w~~d~~~~~~~ 95 (495)
++|+ |...|++|.|++. + +..+|.+. .+|+|+++++ +.+| +.|+|.||| ..+.||.+....
T Consensus 1 v~FrlwAP~A~~V~L~l~---~-~~~~m~k~--~~GvW~~~v~~~~~G-~~Y~y~v~g~~~v~DPya~~~~ 64 (542)
T TIGR02402 1 VRFRLWAPTAASVKLRLN---G-ALHAMQRL--GDGWFEITVPPVGPG-DRYGYVLDDGTPVPDPASRRQP 64 (542)
T ss_pred CEEEEECCCCCEEEEEeC---C-CEEeCeEC--CCCEEEEEECCCCCC-CEEEEEEeeeEEecCccccccc
Confidence 4676 9999999999973 3 34689884 4799999997 7778 789999999 788999888654
No 232
>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=96.48 E-value=0.011 Score=48.17 Aligned_cols=54 Identities=20% Similarity=0.405 Sum_probs=41.4
Q ss_pred eeEEEEe----cCCCceEEEEEccC---CCCCC--CCCCcccCCCCeEEEEEEeCCc-eEEEEEEE
Q 011043 26 IPMRFVW----PYGGRSVFLSGSFN---RWSEL--LPMSPVEGCPTVFQIIWSIPPG-YHQYKFCV 81 (495)
Q Consensus 26 ~~~~f~~----~~~~~~V~v~Gsf~---~W~~~--~~m~~~~~~~~~~~~~~~l~~g-~~~ykf~v 81 (495)
|+++|.- ...++.++|+|+-. +|++. ++|... ....|++.+.||.| ..+|||++
T Consensus 1 v~v~f~~~~~~t~~Ge~l~v~Gs~~~LG~W~~~~a~~l~~~--~~~~W~~~v~lp~~~~veyKyv~ 64 (97)
T cd05810 1 VSVTFSCNNGTTQLGQSVYVVGNVPQLGNWSPADAVKLDPT--AYPTWSGSISLPASTNVEWKCLK 64 (97)
T ss_pred CeEEEEEeecccCCCCeEEEEEChHHhCCCChhhcccccCC--CCCeEEEEEEcCCCCeEEEEEEE
Confidence 4566662 23478999999887 89863 567553 45789999999998 79999987
No 233
>PRK05402 glycogen branching enzyme; Provisional
Probab=96.46 E-value=0.0059 Score=68.00 Aligned_cols=62 Identities=13% Similarity=0.131 Sum_probs=46.1
Q ss_pred eEEEE-ecCCCceEEEEEccCCCCCCCCCCcccCCCCeEEEEEEeCCceEEEEEEE--CCE--EeeCCCC
Q 011043 27 PMRFV-WPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCV--DGE--WRHDEHQ 91 (495)
Q Consensus 27 ~~~f~-~~~~~~~V~v~Gsf~~W~~~~~m~~~~~~~~~~~~~~~l~~g~~~ykf~v--dg~--w~~d~~~ 91 (495)
-++|+ |.++|++|+|+|+||+ ....||.+. ...|.|++.+++..|. .|||.| ||+ .+.||-+
T Consensus 29 g~~f~vwaP~A~~V~vvgdfn~-~~~~~m~~~-~~~G~w~~~ip~~~g~-~YKy~i~~~g~~~~k~DPya 95 (726)
T PRK05402 29 GLVVRALLPGAEEVWVILPGGG-RKLAELERL-HPRGLFAGVLPRKGPF-DYRLRVTWGGGEQLIDDPYR 95 (726)
T ss_pred cEEEEEECCCCeEEEEEeecCC-CccccceEc-CCCceEEEEecCCCCC-CeEEEEEeCCceeEeccccc
Confidence 56787 9999999999999997 334589875 3579999999966662 255555 785 5556544
No 234
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=96.42 E-value=0.014 Score=63.77 Aligned_cols=66 Identities=27% Similarity=0.514 Sum_probs=50.2
Q ss_pred eEEEE-ecCCCceEEEEEccCCCCCC-CCCCcccCCCCeEEEEEE-eCCceEEEEEEEC---CE--EeeCCCCCee
Q 011043 27 PMRFV-WPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVD---GE--WRHDEHQPFI 94 (495)
Q Consensus 27 ~~~f~-~~~~~~~V~v~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~-l~~g~~~ykf~vd---g~--w~~d~~~~~~ 94 (495)
-++|+ |.+.|++|.|+|+||+|... .+|.+. ...|+|++.++ +.+|. .|+|.|+ |. ++.||-+...
T Consensus 29 g~~FrvwAP~A~~V~L~~dfn~w~~~~~~m~~~-~~~Gvw~~~i~~~~~g~-~Y~y~v~~~~g~~~~~~DPYA~~~ 102 (613)
T TIGR01515 29 GTRFCVWAPNAREVRVAGDFNYWDGREHPMRRR-NDNGIWELFIPGIGEGE-LYKYEIVTNNGEIRLKADPYAFYA 102 (613)
T ss_pred cEEEEEECCCCCEEEEEEecCCCCCceecceEe-cCCCEEEEEeCCCCCCC-EEEEEEECCCCcEEEeCCCCEeee
Confidence 56788 99999999999999999764 488764 23699999986 35564 5888884 54 5778877644
No 235
>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.38 E-value=0.013 Score=47.43 Aligned_cols=47 Identities=23% Similarity=0.493 Sum_probs=38.4
Q ss_pred CCCceEEEEEccC---CCCC--CCCCCcccCCCCeEEEEEEeCC--c-eEEEEEEE
Q 011043 34 YGGRSVFLSGSFN---RWSE--LLPMSPVEGCPTVFQIIWSIPP--G-YHQYKFCV 81 (495)
Q Consensus 34 ~~~~~V~v~Gsf~---~W~~--~~~m~~~~~~~~~~~~~~~l~~--g-~~~ykf~v 81 (495)
..|+.++|+|+.. +|++ .++|...+ ..+.|++.+.+|+ | .++|||++
T Consensus 11 ~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~-~~~~W~~~v~~~~~~~~~~~yKy~~ 65 (96)
T cd05467 11 QFGQSVYVVGSHPELGNWDPAKALRLNTSN-SYPLWTGEIPLPAPEGQVIEYKYVI 65 (96)
T ss_pred CCCCEEEEEeCcHHhCCcChhcCccccCCC-CCCcEEEEEEecCCCCCeEEEEEEE
Confidence 4588999999987 8985 35787642 3688999999999 6 79999998
No 236
>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star
Probab=96.30 E-value=0.042 Score=44.81 Aligned_cols=45 Identities=27% Similarity=0.500 Sum_probs=37.0
Q ss_pred CCceEEEEEccC---CCCCC--CCCCcccCCCCeEEEEEEeCCc--eEEEEEEE
Q 011043 35 GGRSVFLSGSFN---RWSEL--LPMSPVEGCPTVFQIIWSIPPG--YHQYKFCV 81 (495)
Q Consensus 35 ~~~~V~v~Gsf~---~W~~~--~~m~~~~~~~~~~~~~~~l~~g--~~~ykf~v 81 (495)
.|++|+|+|+-. +|++. ++|... ....|++.+.+|++ .++|||++
T Consensus 13 ~Ge~v~i~Gs~~~LG~W~~~~a~~l~~~--~~~~W~~~v~~p~~~~~ieYKyvi 64 (99)
T cd05816 13 KGQSVYVTGSSPELGNWDPQKALKLSDV--GFPIWEADIDISKDSFPFEYKYII 64 (99)
T ss_pred CCCEEEEEEChHHhCCCCccccccCCCC--CCCcEEEEEEeCCCCccEEEEEEE
Confidence 589999999865 89863 588764 36789999999986 59999998
No 237
>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.13 E-value=0.029 Score=45.86 Aligned_cols=46 Identities=26% Similarity=0.467 Sum_probs=37.3
Q ss_pred CCCceEEEEEcc---CCCCCC--CCCCcccCCCCeEEEEEEeCCc-eEEEEEEE
Q 011043 34 YGGRSVFLSGSF---NRWSEL--LPMSPVEGCPTVFQIIWSIPPG-YHQYKFCV 81 (495)
Q Consensus 34 ~~~~~V~v~Gsf---~~W~~~--~~m~~~~~~~~~~~~~~~l~~g-~~~ykf~v 81 (495)
..|+.++|+|+- -+|++. ++|... ....|++++.||++ .++|||++
T Consensus 11 ~~Ge~l~v~Gs~~~LG~W~~~~a~~m~~~--~~~~W~~~v~lp~~~~veYKY~i 62 (100)
T cd05817 11 QFGEAVYISGNCNQLGNWNPSKAKRMQWN--EGDLWTVDVGIPESVYIEYKYFV 62 (100)
T ss_pred CCCCEEEEEeCcHHHCCCCccccCcccCC--CCCCEEEEEEECCCCcEEEEEEE
Confidence 347899999994 589864 578664 35789999999987 79999998
No 238
>cd05806 CBM20_laforin Laforin protein tyrosine phosphatase, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Laforin, encoded by the EPM2A gene, is a dual-specificity phosphatase that dephosphorylates complex carbohydrates. Mutations in the gene encoding laforin result in Lafora disease, a fatal autosomal recessive neurodegenerative disorder characterized by the presence of intracellular deposits of insoluble, abnormally branched, glycogen-like polymers, known as Lafora bodies, in neurons, muscle, liver, and other tissues. The molecular basis for the formation of these Lafora bodies is unknown. Laforin is one of the only phosphatases that contains a carbohydrate-binding module. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen
Probab=95.55 E-value=0.18 Score=42.01 Aligned_cols=51 Identities=20% Similarity=0.347 Sum_probs=39.0
Q ss_pred EecCCCceEEEEEccC---CCCCC--CCCCccc-----CCCCeEEEEEEeCCc----eEEEEEEE
Q 011043 31 VWPYGGRSVFLSGSFN---RWSEL--LPMSPVE-----GCPTVFQIIWSIPPG----YHQYKFCV 81 (495)
Q Consensus 31 ~~~~~~~~V~v~Gsf~---~W~~~--~~m~~~~-----~~~~~~~~~~~l~~g----~~~ykf~v 81 (495)
+....+++++|+|+-. +|+.. ++|.... ..+..|++++.||++ .++|||+.
T Consensus 10 ~~~~~gq~v~IvGsipeLG~Wd~~~Av~Ls~~~yt~~~~~~~~W~~~v~lp~~~~~~~~eYKfv~ 74 (112)
T cd05806 10 TFADRDTELLVLGSRPELGSWDPQRAVPMRPARKALSPQEPSLWLGEVELSEPGSEDTFWYKFLK 74 (112)
T ss_pred eecCCCCEEEEEECchhcCCCCcccccccccccccccCCCCCEEEEEEEcCCCCcCceEEEEEEE
Confidence 4566789999999865 89864 4676531 134579999999996 69999997
No 239
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=95.49 E-value=0.034 Score=60.70 Aligned_cols=64 Identities=17% Similarity=0.282 Sum_probs=47.0
Q ss_pred EEEE-ecCCCceEEEEEccCCCCC-----CCCCCcccCCCCeEEEEEE-eCCc-eEEEEEEECCE--EeeCCCCCee
Q 011043 28 MRFV-WPYGGRSVFLSGSFNRWSE-----LLPMSPVEGCPTVFQIIWS-IPPG-YHQYKFCVDGE--WRHDEHQPFI 94 (495)
Q Consensus 28 ~~f~-~~~~~~~V~v~Gsf~~W~~-----~~~m~~~~~~~~~~~~~~~-l~~g-~~~ykf~vdg~--w~~d~~~~~~ 94 (495)
++|+ |...|++|.|++ |++|.. .++|.+. ..|+|++.++ +.+| .|.|++..+|. ++.||.+...
T Consensus 21 ~~F~vwaP~a~~V~l~~-~~~~~~~~~~~~~~m~~~--~~gvw~~~i~~~~~g~~Y~y~v~~~~~~~~~~DPya~~~ 94 (605)
T TIGR02104 21 TVFRVWAPTATEVELLL-YKSGEDGEPYKVVKMKRG--ENGVWSAVLEGDLHGYFYTYQVCINGKWRETVDPYAKAV 94 (605)
T ss_pred eEEEEECCCCCEEEEEE-EcCCCCCccceEEecccC--CCCEEEEEECCCCCCCEEEEEEEcCCCeEEEcCCCccee
Confidence 7887 999999999998 888853 3588773 4799999987 4555 44444444564 5899988654
No 240
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=95.15 E-value=0.068 Score=57.45 Aligned_cols=60 Identities=10% Similarity=0.179 Sum_probs=49.7
Q ss_pred CcccCCCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhh
Q 011043 267 GKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYF 330 (495)
Q Consensus 267 g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~ 330 (495)
.++|.+++.++..+.|..|.-+.+....++.+|++++ .++- -++|.+..+.+...+..+.
T Consensus 591 E~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s-~esm---iLlGSV~R~~L~~ll~~~i 650 (931)
T KOG0476|consen 591 EHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVES-KESM---ILLGSVARRYLTALLQRHI 650 (931)
T ss_pred eeeccccceeeeccCcHHHHHHHHHhCccceeccccC-cccc---eeeehhHHHHHHHHHHhhc
Confidence 4589999999999999999888877766999999963 2333 6899999999998887653
No 241
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=94.94 E-value=0.086 Score=41.88 Aligned_cols=60 Identities=23% Similarity=0.505 Sum_probs=36.4
Q ss_pred eEEEEecC------CCceEEEEEccCCCCCC--CCCCccc--CCCCeEEEEEEeCCceEEEEEEE-CC--EEe
Q 011043 27 PMRFVWPY------GGRSVFLSGSFNRWSEL--LPMSPVE--GCPTVFQIIWSIPPGYHQYKFCV-DG--EWR 86 (495)
Q Consensus 27 ~~~f~~~~------~~~~V~v~Gsf~~W~~~--~~m~~~~--~~~~~~~~~~~l~~g~~~ykf~v-dg--~w~ 86 (495)
++++.|.. ++.+|++.+.|++|... .+|.+.. ...+.|++++.+|...|+..|+- || .|-
T Consensus 3 ~vtVyYn~~~~~l~g~~~v~~~~G~n~W~~~~~~~m~~~~~~~~~~~~~~tv~vP~~a~~~dfvF~dg~~~wD 75 (87)
T PF03423_consen 3 TVTVYYNPSLTALSGAPNVHLHGGFNRWTHVPGFGMTKMCVPDEGGWWKATVDVPEDAYVMDFVFNDGAGNWD 75 (87)
T ss_dssp EEEEEE---E-SSS-S-EEEEEETTS-B-SSS-EE-EEESS---TTEEEEEEE--TTTSEEEEEEE-SSS-EE
T ss_pred EEEEEEEeCCCCCCCCCcEEEEecCCCCCcCCCCCcceeeeeecCCEEEEEEEEcCCceEEEEEEcCCCCcEe
Confidence 45555533 47889999999999864 3566542 12699999999999988888887 55 563
No 242
>cd05815 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 starch binding domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal carbohydrate-binding domains. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabol
Probab=94.83 E-value=0.21 Score=40.84 Aligned_cols=47 Identities=32% Similarity=0.588 Sum_probs=36.0
Q ss_pred CCceEEEEEccC---CCCCC--CCCCcc-cCCCCeEEEEEEeCCc-eEEEEEEE
Q 011043 35 GGRSVFLSGSFN---RWSEL--LPMSPV-EGCPTVFQIIWSIPPG-YHQYKFCV 81 (495)
Q Consensus 35 ~~~~V~v~Gsf~---~W~~~--~~m~~~-~~~~~~~~~~~~l~~g-~~~ykf~v 81 (495)
-|++++|+|+-. +|++. .+|... ......|++.+.+|++ .++|||+|
T Consensus 12 ~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~~~W~~~v~~~~~~~veYky~v 65 (101)
T cd05815 12 WGQSLLICGSDPLLGSWNVKKGLLLKPSHQGDVLVWSGSISVPPGFSSEYNYYV 65 (101)
T ss_pred CCCEEEEEcChHHcCCcChHhcEeeeecCCCCCCEEEEEEEeCCCCcEEEEEEE
Confidence 378999999875 79764 577542 1223489999999987 69999999
No 243
>PLN02960 alpha-amylase
Probab=94.39 E-value=0.038 Score=61.27 Aligned_cols=56 Identities=27% Similarity=0.468 Sum_probs=41.8
Q ss_pred eEEEE-ecCCCceEEEEEccCCCCCCC-CCCcc---cCCCCeEEEEEE--eCCce-------EEEEEEEC
Q 011043 27 PMRFV-WPYGGRSVFLSGSFNRWSELL-PMSPV---EGCPTVFQIIWS--IPPGY-------HQYKFCVD 82 (495)
Q Consensus 27 ~~~f~-~~~~~~~V~v~Gsf~~W~~~~-~m~~~---~~~~~~~~~~~~--l~~g~-------~~ykf~vd 82 (495)
-+.|. |..||+.++|+|+||||+++. +|.+. -+.-|+|.++++ |..|. -+|.|..|
T Consensus 129 ~~~~~~wap~a~~~~~~gdfn~w~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (897)
T PLN02960 129 RVDFMEWAPGARYCSLVGDFNNWSPTENRAREGYFGHDDFGYWFIILEDKLREGEEPDELYFQEYNYVDD 198 (897)
T ss_pred CeEEEEEcCCceeEEEeecccCCCcccchhhcccccccccceEEEEechhhhcCCCcchhhhhhhccccc
Confidence 46666 999999999999999999864 55411 123689999986 77762 36888775
No 244
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.01 E-value=0.11 Score=50.83 Aligned_cols=91 Identities=13% Similarity=0.223 Sum_probs=68.8
Q ss_pred CcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccccCcccccccCCCC
Q 011043 281 DNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPN 360 (495)
Q Consensus 281 ~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~~~m 360 (495)
..-..++..+.......+.++ +..+ +.+|+++..+..... +
T Consensus 293 ~~~~~al~~~~~~~~~~~~~~---~~~~---~~~g~v~~~~~~~~~---------------------------------~ 333 (386)
T COG4175 293 DGPRVALKLLRDEGREYGYAV---DRGN---KFVGVVSIDSLVKAA---------------------------------L 333 (386)
T ss_pred cccchhhhhhhhccchhhHHH---hccC---ceeeEEeccchhccc---------------------------------c
Confidence 344567777877777777777 2455 689999888876430 2
Q ss_pred CCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 011043 361 RRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK 411 (495)
Q Consensus 361 ~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~ 411 (495)
..++.++..++++.+.+..+.+.. ..++|+|++++++|++++..++.++.
T Consensus 334 ~~~~~~v~~d~~~~~~~~~~~~~~-~p~aVvde~~r~vG~i~~~~vl~aL~ 383 (386)
T COG4175 334 IDDVLTVDADTPLSEILARIRQAP-CPVAVVDEDGRYVGIISRGELLEALA 383 (386)
T ss_pred cccccccCccchHHHHHHHHhcCC-CceeEEcCCCcEEEEecHHHHHHHHh
Confidence 345677888999999888877655 47899999999999999999998654
No 245
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=93.52 E-value=0.17 Score=55.88 Aligned_cols=55 Identities=22% Similarity=0.406 Sum_probs=41.6
Q ss_pred eEEEE-ecCCCceEEEEEccCCCCC----CCCCCcccCCCCeEEEEEE-eCCceEEEEEEECCEE
Q 011043 27 PMRFV-WPYGGRSVFLSGSFNRWSE----LLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVDGEW 85 (495)
Q Consensus 27 ~~~f~-~~~~~~~V~v~Gsf~~W~~----~~~m~~~~~~~~~~~~~~~-l~~g~~~ykf~vdg~w 85 (495)
-++|+ |...|++|.|+ -|++|.. ..+|.+. .+|+|++.++ +.+|. .|+|.|+|.|
T Consensus 15 g~~F~vwap~A~~V~L~-l~~~~~~~~~~~~~m~~~--~~gvW~~~v~~~~~g~-~Y~yrv~g~~ 75 (688)
T TIGR02100 15 GVNFALFSANAEKVELC-LFDAQGEKEEARLPLPER--TDDIWHGYLPGAQPGQ-LYGYRVHGPY 75 (688)
T ss_pred cEEEEEECCCCCEEEEE-EEcCCCCceeeEEecccC--CCCEEEEEECCCCCCC-EEEEEEeeee
Confidence 36787 99999999997 5665542 3578763 5799999996 66776 5999999854
No 246
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=93.23 E-value=0.32 Score=49.88 Aligned_cols=48 Identities=10% Similarity=0.182 Sum_probs=40.4
Q ss_pred CCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 011043 362 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK 411 (495)
Q Consensus 362 ~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~ 411 (495)
....++.+++++.+++..+.+.+. -++|+|+ |+++|+|++.+++..+.
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~-~~~~g~~~~~~~~~~~~ 380 (382)
T TIGR03415 333 AAPTVINPDTLMRDVLAARHRTGG-AILLVEN-GRIVGVIGDDNIYHALL 380 (382)
T ss_pred ccCcccCCCCcHHHHHHHHhcCCC-CeEEeeC-CeEEEEEeHHHHHHHHh
Confidence 346788999999999998887764 5888885 99999999999998653
No 247
>PRK03705 glycogen debranching enzyme; Provisional
Probab=93.11 E-value=0.17 Score=55.57 Aligned_cols=54 Identities=19% Similarity=0.406 Sum_probs=41.3
Q ss_pred EEEE-ecCCCceEEEEEccCCCC--CCCCCCcccCCCCeEEEEEE-eCCceEEEEEEECCEE
Q 011043 28 MRFV-WPYGGRSVFLSGSFNRWS--ELLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVDGEW 85 (495)
Q Consensus 28 ~~f~-~~~~~~~V~v~Gsf~~W~--~~~~m~~~~~~~~~~~~~~~-l~~g~~~ykf~vdg~w 85 (495)
+.|+ |...|++|.|+. |++|. ..++|.+. .+|+|++.++ +.+|. .|+|.|+|.|
T Consensus 21 ~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~--~~gvW~~~v~~~~~G~-~Y~yrv~g~~ 78 (658)
T PRK03705 21 VNFTLFSAHAERVELCV-FDENGQEQRYDLPAR--SGDIWHGYLPGARPGL-RYGYRVHGPW 78 (658)
T ss_pred EEEEEECCCCCEEEEEE-EcCCCCeeeEeeeec--cCCEEEEEECCCCCCC-EEEEEEcccc
Confidence 6887 999999999998 77653 23588663 4799999986 55564 5999998853
No 248
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=93.06 E-value=0.42 Score=45.56 Aligned_cols=113 Identities=14% Similarity=0.140 Sum_probs=63.0
Q ss_pred cHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccC-CCCCcccccccccccCcccccccCCCC
Q 011043 282 NLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHC-SSSLPILKLPICAIPVGTWVPKIGEPN 360 (495)
Q Consensus 282 sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~-~~~~~~l~~~v~~l~i~~~~~~v~~~m 360 (495)
.+.+|+++ ..++.|+ .+| +++.+-+..+|++.-...|-.. ..........+.......... ...
T Consensus 195 DidEA~kL-----adri~vm----~~G---~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~---~~~ 259 (309)
T COG1125 195 DIDEALKL-----ADRIAVM----DAG---EIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVR---RGE 259 (309)
T ss_pred CHHHHHhh-----hceEEEe----cCC---eEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhc---ccc
Confidence 45666664 3567777 357 8999999999986544333110 000000001111111111100 000
Q ss_pred CCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 011043 361 RRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL 409 (495)
Q Consensus 361 ~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~ 409 (495)
...--.+.......+++..+...+...+||+|++|+++|.+|+.+++..
T Consensus 260 ~~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~~ 308 (309)
T COG1125 260 PADGEPLLEGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLDE 308 (309)
T ss_pred cccCCccccchhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhhh
Confidence 0001112233344557778888999999999999999999999998753
No 249
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=92.88 E-value=0.27 Score=56.79 Aligned_cols=65 Identities=9% Similarity=0.090 Sum_probs=48.8
Q ss_pred EEEE-ecCCCceEEEEE-ccCCCCC---CCCCCcccCCCCeEEEEEE-eCCc-----eEEEEEEECC----EEeeCCCCC
Q 011043 28 MRFV-WPYGGRSVFLSG-SFNRWSE---LLPMSPVEGCPTVFQIIWS-IPPG-----YHQYKFCVDG----EWRHDEHQP 92 (495)
Q Consensus 28 ~~f~-~~~~~~~V~v~G-sf~~W~~---~~~m~~~~~~~~~~~~~~~-l~~g-----~~~ykf~vdg----~w~~d~~~~ 92 (495)
++|+ |...|++|.|++ ++++|.. .++|.+. ..|+|++.++ +.+| -+.|+|.|++ ..+.||.+.
T Consensus 329 v~F~vWAP~A~~V~L~lyd~~~~~~~~~~~~m~~~--~~GvW~v~v~~~~~G~~d~~G~~Y~Y~V~~~~~~~~~~DPYA~ 406 (1111)
T TIGR02102 329 VTLKLWSPSADHVSVVLYDKDDQDKVVGTVELKKG--DRGVWEVQLTKENTGIDSLTGYYYHYEITRGGDKVLALDPYAK 406 (1111)
T ss_pred EEEEEECCCCCEEEEEEEeCCCCCCceeeEecccC--CCCEEEEEECCcccCcccCCCceEEEEEECCCceEEEeChhhe
Confidence 6787 999999999998 4556654 4689874 5899999987 4432 4688888876 467888776
Q ss_pred ee
Q 011043 93 FI 94 (495)
Q Consensus 93 ~~ 94 (495)
.+
T Consensus 407 al 408 (1111)
T TIGR02102 407 SL 408 (1111)
T ss_pred EE
Confidence 54
No 250
>PLN02316 synthase/transferase
Probab=92.62 E-value=0.51 Score=54.09 Aligned_cols=58 Identities=14% Similarity=0.293 Sum_probs=45.2
Q ss_pred eeEEEEecC------CCceEEEEEccCCCCCCC----CCCccc-CCCCeEEEEEEeCCceEEEEEEE-CC
Q 011043 26 IPMRFVWPY------GGRSVFLSGSFNRWSELL----PMSPVE-GCPTVFQIIWSIPPGYHQYKFCV-DG 83 (495)
Q Consensus 26 ~~~~f~~~~------~~~~V~v~Gsf~~W~~~~----~m~~~~-~~~~~~~~~~~l~~g~~~ykf~v-dg 83 (495)
-++++.|+. ++.+|++.|.||+|.... .|.+.+ +.++.|.+++.+|+..|-.-|+. ||
T Consensus 329 ~~v~lyYN~~~~~L~~~~~v~i~gg~N~W~~~~~~~~~~~~~~~~~g~ww~a~v~vP~~A~~mDfVFsdg 398 (1036)
T PLN02316 329 DTVKLYYNRSSGPLAHSTEIWIHGGYNNWIDGLSIVEKLVKSEEKDGDWWYAEVVVPERALVLDWVFADG 398 (1036)
T ss_pred CEEEEEECCCCCCCCCCCcEEEEEeEcCCCCCCcccceeecccCCCCCEEEEEEecCCCceEEEEEEecC
Confidence 388888884 368899999999998532 333433 24569999999999999999997 66
No 251
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=92.37 E-value=0.78 Score=43.77 Aligned_cols=111 Identities=17% Similarity=0.247 Sum_probs=69.6
Q ss_pred ceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhc--------ccccC-cccccCHHHHHHcCCC
Q 011043 364 LAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK--------AYAHI-NLSEMTIHQALQLGQD 434 (495)
Q Consensus 364 ~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~--------~~~~l-~~~~~~v~~~l~~~~~ 434 (495)
++.|+. .+.+|+++- .++.|.+ +|+++=+-+..+++.-.++. ....+ .+...++.+.+.....
T Consensus 189 ivfVTH--DidEA~kLa-----dri~vm~-~G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~~~ 260 (309)
T COG1125 189 IVFVTH--DIDEALKLA-----DRIAVMD-AGEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRGEP 260 (309)
T ss_pred EEEEec--CHHHHHhhh-----ceEEEec-CCeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhccccc
Confidence 455554 478888764 5788887 79999999988887522111 00001 1122334443322110
Q ss_pred CCCCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHH
Q 011043 435 SYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 492 (495)
Q Consensus 435 ~~~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~ 492 (495)
..--.........+++..+...+...+||||+ +|+++|.||..+|+..
T Consensus 261 ---------~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~-~g~~~G~vt~~~l~~~ 308 (309)
T COG1125 261 ---------ADGEPLLEGFVDRDALSDFLARGRSVLPVVDE-DGRPLGTVTRADLLDE 308 (309)
T ss_pred ---------ccCCccccchhhHHHHHHHHhcCCceeEEECC-CCcEeeEEEHHHHhhh
Confidence 00111233445556888889999999999995 8999999999999875
No 252
>PLN02950 4-alpha-glucanotransferase
Probab=92.29 E-value=0.88 Score=51.82 Aligned_cols=58 Identities=33% Similarity=0.577 Sum_probs=42.7
Q ss_pred ceeeEEEEecC---CCceEEEEEccC---CCCCC--CCCCccc-CCCCeEEEEEEeCCc-eEEEEEEE
Q 011043 24 VLIPMRFVWPY---GGRSVFLSGSFN---RWSEL--LPMSPVE-GCPTVFQIIWSIPPG-YHQYKFCV 81 (495)
Q Consensus 24 ~~~~~~f~~~~---~~~~V~v~Gsf~---~W~~~--~~m~~~~-~~~~~~~~~~~l~~g-~~~ykf~v 81 (495)
..+.++|.-++ -|++|+|+|+-. +|+.. .+|+... .....|++++.||+| ..+|||++
T Consensus 7 ~~V~V~F~i~y~T~~GQ~l~VvGs~~~LG~Wd~~kA~~Ls~~~~~d~~~W~~~v~lp~~~~ieYKYv~ 74 (909)
T PLN02950 7 KSVTLSFRIPYYTQWGQSLLVCGSEPLLGSWNVKKGLLLSPVHQGDELVWEGSVSVPEGFSCEYSYYV 74 (909)
T ss_pred CcEEEEEEeEEecCCCCeEEEEecchhcCCCCcccceecccccCCCCCeEEEEEEecCCCeEEEEEEE
Confidence 34667776332 489999999986 79864 5776532 123489999999997 79999995
No 253
>PF11806 DUF3327: Domain of unknown function (DUF3327); InterPro: IPR021764 This entry represents the N-terminal domain of enterochelin esterase. The activity of the enzyme has been characterised [, ]. Fes catalyses the hydrolysis of the 2,3-dihydroxy-N-benzoyl-L-serine trimer, enterochelin, forming 2,3-dihydroxybenzoylserine. It also catalyses hydrolysis of free enterobactin and ferric enterobactin. Upon hydrolysis of ferric enterobactin by Fes, released iron is probably reduced by a second enzyme. Enterochelin esterase represents a family of non-peptidase homologues belonging to the MEROPS peptidase family S9, clan SC. ; GO: 0005506 iron ion binding, 0008849 enterochelin esterase activity, 0006826 iron ion transport, 0005737 cytoplasm; PDB: 3MGA_B 3C87_B 3C8H_B 3C8D_A 2B20_A.
Probab=92.15 E-value=1.2 Score=37.74 Aligned_cols=83 Identities=18% Similarity=0.279 Sum_probs=54.8
Q ss_pred eEEEEec----CCCceEEEEEccCCCCCC-----CCCCcccCCCCeEEEEEEeCCc-eEEEEEEECCE------------
Q 011043 27 PMRFVWP----YGGRSVFLSGSFNRWSEL-----LPMSPVEGCPTVFQIIWSIPPG-YHQYKFCVDGE------------ 84 (495)
Q Consensus 27 ~~~f~~~----~~~~~V~v~Gsf~~W~~~-----~~m~~~~~~~~~~~~~~~l~~g-~~~ykf~vdg~------------ 84 (495)
-|+|.|. .....+.|.|+.|++..+ ..|.+.+ +..+|+.++.||.+ +-.|+|+.+-.
T Consensus 3 ~VTFlWRdp~~~~~~~~~V~~~~ngvtD~~~~~~~~l~Rl~-gTDVW~~t~~lp~d~rgSY~~~p~~~~~~~~~r~~~r~ 81 (122)
T PF11806_consen 3 LVTFLWRDPDEGASANVRVYGDINGVTDHHDPDPQSLQRLP-GTDVWYWTYRLPADWRGSYSFIPDVPDARGAQREWWRA 81 (122)
T ss_dssp EEEEEEE-TSTTT----EEEEEETTTTCGGGT---BEEE-T-TSSEEEEEEEEETT-EEEEEEEEES-T-HHHHHHHHHH
T ss_pred EEEEEEeCCCCCCCceeEEEEECCcccccccCChhhheeCC-CCceEEEEEEECcccEEEEEEEecCcccchhHHHHHHH
Confidence 5899999 456779999999999542 3677764 45899999999998 88899997432
Q ss_pred ----EeeCCCCCee-eCC---CCCeeeEEEecCC
Q 011043 85 ----WRHDEHQPFI-SSE---YGIVNTVLLATEP 110 (495)
Q Consensus 85 ----w~~d~~~~~~-~~~---~g~~nn~~~v~~~ 110 (495)
-+.||-||.. ... .|..-+++...+.
T Consensus 82 ~l~~~~~DPlNp~~~~~~~~~~g~~~S~l~Lp~A 115 (122)
T PF11806_consen 82 ILAQAQADPLNPRPWPNGAQDRGNAASVLELPDA 115 (122)
T ss_dssp HGGG-B--TTSSSEEE-TT---SSEEEEEE-TTS
T ss_pred HHhccCCCCCCCCCCCCCccccccccCceeCCCC
Confidence 2678989854 333 4788888877543
No 254
>PLN02316 synthase/transferase
Probab=92.00 E-value=0.42 Score=54.74 Aligned_cols=65 Identities=17% Similarity=0.324 Sum_probs=50.5
Q ss_pred eEEEEecCC------CceEEEEEccCCCCCC---CCCCcccCCCCeEEEEEEeCCceEEEEEEE-CCE--EeeCCCC
Q 011043 27 PMRFVWPYG------GRSVFLSGSFNRWSEL---LPMSPVEGCPTVFQIIWSIPPGYHQYKFCV-DGE--WRHDEHQ 91 (495)
Q Consensus 27 ~~~f~~~~~------~~~V~v~Gsf~~W~~~---~~m~~~~~~~~~~~~~~~l~~g~~~ykf~v-dg~--w~~d~~~ 91 (495)
|+++.|+.. ..+|.|.|.||+|.-. .+|.|.+..+++|++.+.+|+..|..-|+. ||. |-++..+
T Consensus 155 ~~~v~~n~~~~~L~~~~~v~i~~gfN~W~~~~f~~~~~k~~~~g~ww~~~v~Vp~~A~~ldfVf~~g~~~yDNN~~~ 231 (1036)
T PLN02316 155 DIEVYLNRSLSTLANEPDVLIMGAFNGWRWKSFTERLEKTELGGDWWSCKLHIPKEAYKMDFVFFNGQNVYDNNDHK 231 (1036)
T ss_pred eeEEEEcCCCCccCCCCceEEEeccccccccccceeccccccCCCeEEEEEecCccceEEEEEEeCCccccccCCCC
Confidence 566666654 4779999999999753 378887656789999999999999999998 764 4444444
No 255
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=91.74 E-value=0.54 Score=53.16 Aligned_cols=67 Identities=21% Similarity=0.191 Sum_probs=47.2
Q ss_pred eEEEE-ecCCCceEEEEEccCCCC--CCCCCCcccCCCCeEEEEEE-eCCceEEEEEEEC------CE----EeeCCCCC
Q 011043 27 PMRFV-WPYGGRSVFLSGSFNRWS--ELLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVD------GE----WRHDEHQP 92 (495)
Q Consensus 27 ~~~f~-~~~~~~~V~v~Gsf~~W~--~~~~m~~~~~~~~~~~~~~~-l~~g~~~ykf~vd------g~----w~~d~~~~ 92 (495)
-++|+ |.+.|++|.|++..++|. ...+|.+.+ ..|+|++.++ ...|. .|+|.|+ |+ ++.||.+.
T Consensus 136 gv~FrVWAPtA~~V~L~Ly~~~~~~~~~~~M~~~~-~~GVWsv~v~g~~~G~-~Y~Y~V~v~~p~~G~v~~~~v~DPYA~ 213 (898)
T TIGR02103 136 GVTFRLWAPTAQQVKLHIYSASKKVETTLPMTRDS-TSGVWSAEGGSSWKGA-YYRYEVTVYHPSTGKVETYLVTDPYSV 213 (898)
T ss_pred cEEEEEECCCCCEEEEEEEcCCCCccceEeCccCC-CCCEEEEEECcCCCCC-EeEEEEEEecCCCCeECCeEEeCcCcc
Confidence 46787 999999999997776663 235887642 4799999986 44454 3666664 54 47888876
Q ss_pred eee
Q 011043 93 FIS 95 (495)
Q Consensus 93 ~~~ 95 (495)
...
T Consensus 214 als 216 (898)
T TIGR02103 214 SLS 216 (898)
T ss_pred eEc
Confidence 543
No 256
>PLN02950 4-alpha-glucanotransferase
Probab=91.43 E-value=1.4 Score=50.27 Aligned_cols=69 Identities=22% Similarity=0.417 Sum_probs=50.3
Q ss_pred CCceeeEEEE--ec--CCCceEEEEEccC---CCCCC--CCCCcccCCCCeEEEEEEeCCc--eEEEEEEE---CC--EE
Q 011043 22 DTVLIPMRFV--WP--YGGRSVFLSGSFN---RWSEL--LPMSPVEGCPTVFQIIWSIPPG--YHQYKFCV---DG--EW 85 (495)
Q Consensus 22 ~~~~~~~~f~--~~--~~~~~V~v~Gsf~---~W~~~--~~m~~~~~~~~~~~~~~~l~~g--~~~ykf~v---dg--~w 85 (495)
.+..++++|. .+ ..|++|+|+|+-. +|++. .+|... ....|++.+.+|++ ..+|||++ +| .|
T Consensus 149 ~~~~v~V~F~v~~~~~~~Gq~v~VvGs~~eLGnW~~~~a~~Ls~~--~~p~W~~~v~lp~~~~~~EYKyv~~~~~g~v~W 226 (909)
T PLN02950 149 APDEIVVRFKIACPRLEEGTSVYVTGSIAQLGNWQVDDGLKLNYT--GDSIWEADCLVPKSDFPIKYKYALQTAEGLVSL 226 (909)
T ss_pred CCCceeEEEEEecCccCCCCeEEEEechhhcCCCCcccccccccC--CCCcEEEEEEecCCCceEEEEEEEEcCCCceEE
Confidence 3455788888 33 3589999999876 89864 466543 46889999999988 59999998 34 37
Q ss_pred eeCCCCC
Q 011043 86 RHDEHQP 92 (495)
Q Consensus 86 ~~d~~~~ 92 (495)
-..++.-
T Consensus 227 E~g~NR~ 233 (909)
T PLN02950 227 ELGVNRE 233 (909)
T ss_pred eeCCCce
Confidence 6555544
No 257
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=86.23 E-value=2.4 Score=50.18 Aligned_cols=55 Identities=15% Similarity=0.262 Sum_probs=43.0
Q ss_pred eEEEE-ecCCCceEEEEEccCCCCCC----CCCCcccCCCCeEEEEEE-eCCceEEEEEEECCEE
Q 011043 27 PMRFV-WPYGGRSVFLSGSFNRWSEL----LPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVDGEW 85 (495)
Q Consensus 27 ~~~f~-~~~~~~~V~v~Gsf~~W~~~----~~m~~~~~~~~~~~~~~~-l~~g~~~ykf~vdg~w 85 (495)
-++|. |...|++|.|+ -|+.|... ++|.. +.+++|++.+. +.+|. .|+|.|+|.|
T Consensus 24 gv~F~v~ap~A~~V~L~-lf~~~~~~~~~~~~l~~--~~g~vW~~~i~~~~~g~-~Ygyrv~g~~ 84 (1221)
T PRK14510 24 GVNLALFSGAAERVEFC-LFDLWGVREEARIKLPG--RTGDVWHGFIVGVGPGA-RYGNRQEGPG 84 (1221)
T ss_pred eEEEEEECCCCCEEEEE-EEECCCCCeeEEEECCC--CcCCEEEEEEccCCCCc-EEEEEeccCC
Confidence 47887 99999999998 89988642 46643 35799999876 77786 6999999854
No 258
>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain. Members of this subgroup include: Cyclomaltodextrinase (CDase), maltogenic amylase, and neopullulanase all of which are capable of hydrolyzing all or two of the following three types of substrates: cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. The N-terminus of the CD and pullulan-degrading enzymes may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of
Probab=83.62 E-value=5.5 Score=32.92 Aligned_cols=58 Identities=17% Similarity=0.122 Sum_probs=38.8
Q ss_pred ceeeEEEEe-cCCCceEEEEEccCC--CCC-CCCCCcccCCC--CeEEEEEEeCCceEEEEEEE
Q 011043 24 VLIPMRFVW-PYGGRSVFLSGSFNR--WSE-LLPMSPVEGCP--TVFQIIWSIPPGYHQYKFCV 81 (495)
Q Consensus 24 ~~~~~~f~~-~~~~~~V~v~Gsf~~--W~~-~~~m~~~~~~~--~~~~~~~~l~~g~~~ykf~v 81 (495)
..+.++++= ....++|.|.-.-+. |.. .++|.+....+ ..|+++++++.|.+.|.|.|
T Consensus 16 ~~v~irlr~~~~~v~~v~l~~~~~~~~~~~~~~~M~~~~~~~~~~~~~~~i~~~~~~~~Y~F~l 79 (116)
T cd02857 16 DTLHIRLRTKKGDVAKVYLRYGDPYDKGEEEEVPMRKDGSDELFDYWEATLPPPTGRLRYYFEL 79 (116)
T ss_pred CEEEEEEEecCCCccEEEEEEECCCCCCCceEEEEEEeeeCCceeEEEEEEecCCcEEEEEEEE
Confidence 446666663 334688888665443 222 46887753222 35999999888999999999
No 259
>PLN02877 alpha-amylase/limit dextrinase
Probab=83.23 E-value=3 Score=47.56 Aligned_cols=63 Identities=14% Similarity=0.241 Sum_probs=42.5
Q ss_pred eEEEE-ecCCCceEEEEEccCCCC---C--CCCCCcccCCCCeEEEEEEe-CCceEEEEEEEC------CE----EeeCC
Q 011043 27 PMRFV-WPYGGRSVFLSGSFNRWS---E--LLPMSPVEGCPTVFQIIWSI-PPGYHQYKFCVD------GE----WRHDE 89 (495)
Q Consensus 27 ~~~f~-~~~~~~~V~v~Gsf~~W~---~--~~~m~~~~~~~~~~~~~~~l-~~g~~~ykf~vd------g~----w~~d~ 89 (495)
-++|+ |...|++|.|+- |++|. + .++|. ...|+|++.++- ..| ..|+|.|+ |+ ...||
T Consensus 223 g~~F~VWAPtA~~V~L~l-yd~~~~~~~~~~~~m~---~~~GVWsv~v~~~~~G-~~Y~Y~V~v~~p~~g~~~~~~v~DP 297 (970)
T PLN02877 223 AVSLYLWAPTAQAVSLCL-YDDPRGKEPLEIVQLK---ESNGVWSVEGPKSWEG-CYYVYEVSVYHPSTGKVETCYANDP 297 (970)
T ss_pred CEEEEEECCCCCEEEEEE-ecCCCCccceEEeccc---CCCCEEEEEeccCCCC-CeeEEEEeecccCCCcccccccCCc
Confidence 57787 999999999995 55553 2 23565 358999999873 344 44777775 32 25677
Q ss_pred CCCee
Q 011043 90 HQPFI 94 (495)
Q Consensus 90 ~~~~~ 94 (495)
.+...
T Consensus 298 YA~al 302 (970)
T PLN02877 298 YARGL 302 (970)
T ss_pred cceEE
Confidence 76644
No 260
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=82.82 E-value=6.1 Score=41.07 Aligned_cols=58 Identities=19% Similarity=0.320 Sum_probs=41.8
Q ss_pred CceeeEEEEecCC-C-------ceEEEE--EccC--CCCCCCCCCcccCCCCeEEEEEEeCCc-eEEEEEEE
Q 011043 23 TVLIPMRFVWPYG-G-------RSVFLS--GSFN--RWSELLPMSPVEGCPTVFQIIWSIPPG-YHQYKFCV 81 (495)
Q Consensus 23 ~~~~~~~f~~~~~-~-------~~V~v~--Gsf~--~W~~~~~m~~~~~~~~~~~~~~~l~~g-~~~ykf~v 81 (495)
....-+||.|.+. + +.|+|- |..+ .+....+|.+.. ...+|+.++.||.. +-.|+|++
T Consensus 36 ~~~~~vTFlwr~~~~~~~~~~~~~v~~~~n~~tdh~~~~~~~~l~rl~-~tDvW~~~~~~p~~~r~sY~~~~ 106 (411)
T PRK10439 36 DGMVRVTFWWRDPQGDEEHSTIRRVWIYINGVTDHHQNSQPQSLQRIA-GTDVWQWSTELSANWRGSYCFIP 106 (411)
T ss_pred CCcEEEEEEeeCCCCCcccccceeEEEeCCCCCCcCccCCcchhhccC-CCceEEEEEEECcccEEEEEEEe
Confidence 4558899999973 2 358873 2222 233334788875 56899999999998 88999999
No 261
>PLN03244 alpha-amylase; Provisional
Probab=82.62 E-value=1.5 Score=48.32 Aligned_cols=54 Identities=28% Similarity=0.510 Sum_probs=39.7
Q ss_pred eEEEE-ecCCCceEEEEEccCCCCCCCC------CCcccCCCCeEEEEEE--eCCce-------EEEEEEEC
Q 011043 27 PMRFV-WPYGGRSVFLSGSFNRWSELLP------MSPVEGCPTVFQIIWS--IPPGY-------HQYKFCVD 82 (495)
Q Consensus 27 ~~~f~-~~~~~~~V~v~Gsf~~W~~~~~------m~~~~~~~~~~~~~~~--l~~g~-------~~ykf~vd 82 (495)
-+.|. |..||.--+|+|+||||.++-- |.+ +.-|+|.++++ |..|. -||.|.-|
T Consensus 132 ~~~~~ewapga~~~~~~gdfn~w~~~~~~~r~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (872)
T PLN03244 132 RVDFMDWAPGARYCAIIGDFNGWSPTENAAREGHFGH--DDYGYWFIILEDKLREGEEPDELYFQQYNYVDD 201 (872)
T ss_pred CceeEeecCCcceeeeeccccCCCccccccccccccc--cccceEEEEechhhhcCCCchhhhHhhhccccc
Confidence 35566 9999999999999999998632 333 23689999986 77762 36666544
No 262
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=82.37 E-value=1.1 Score=48.50 Aligned_cols=41 Identities=27% Similarity=0.481 Sum_probs=32.6
Q ss_pred EEEE-ecCCCceEEEEEccCCCCCCC-CCCcccCCCCeEEEEEE
Q 011043 28 MRFV-WPYGGRSVFLSGSFNRWSELL-PMSPVEGCPTVFQIIWS 69 (495)
Q Consensus 28 ~~f~-~~~~~~~V~v~Gsf~~W~~~~-~m~~~~~~~~~~~~~~~ 69 (495)
+.|+ |..+++.|.++|+||+|.... .+... ...|.|++.++
T Consensus 115 v~~~ewaP~a~~~s~~gd~n~W~~~~~~~~~k-~~~g~w~i~l~ 157 (757)
T KOG0470|consen 115 VDFTEWAPLAEAVSLIGDFNNWNPSSNELKPK-DDLGVWEIDLP 157 (757)
T ss_pred eeeeeecccccccccccccCCCCCcccccCcc-cccceeEEecC
Confidence 7777 999999999999999999863 44422 34789998876
No 263
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=77.81 E-value=2.9 Score=45.49 Aligned_cols=61 Identities=18% Similarity=0.207 Sum_probs=51.8
Q ss_pred cccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcC--CCcEEEEEeHHHHHHHHhh
Q 011043 352 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDD--NDSLLDIYCRSDITALAKD 412 (495)
Q Consensus 352 ~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~--~g~lvGivs~~Dl~~~~~~ 412 (495)
+.-.++++|-+++..+..+.+..+..+.+.....+.+|+||+ +-.++|.|.++.+..++..
T Consensus 586 h~v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~ 648 (931)
T KOG0476|consen 586 HTVKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQR 648 (931)
T ss_pred eEEEeeeeccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHh
Confidence 334678899999999999999999999887766999999985 3478999999999877654
No 264
>PF02903 Alpha-amylase_N: Alpha amylase, N-terminal ig-like domain; InterPro: IPR004185 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1J0J_A 1J0H_A 1J0I_A 1J0K_A 1EA9_C 1SMA_A 1GVI_B 1WZK_B 1VFM_B 3A6O_A ....
Probab=68.06 E-value=9.5 Score=32.02 Aligned_cols=70 Identities=17% Similarity=0.203 Sum_probs=45.4
Q ss_pred CCceeeEEEEe-cCCCceEEEE-EccCCC----CC-CCCCCccc--CCCCeEEEEEEeCCceEEEEEEE--CC-EEeeCC
Q 011043 22 DTVLIPMRFVW-PYGGRSVFLS-GSFNRW----SE-LLPMSPVE--GCPTVFQIIWSIPPGYHQYKFCV--DG-EWRHDE 89 (495)
Q Consensus 22 ~~~~~~~~f~~-~~~~~~V~v~-Gsf~~W----~~-~~~m~~~~--~~~~~~~~~~~l~~g~~~ykf~v--dg-~w~~d~ 89 (495)
....+.++|+= .+..++|.|. |+-..| .. ..+|.+.. +.-..|+++++++..+..|.|.| +| .|..++
T Consensus 19 ~~~~l~IRLRt~k~Dv~~V~l~~~d~~~~~~~~~~~~~~M~k~~~~~~fDyye~~l~~~~~r~~Y~F~l~~~~~~~~y~~ 98 (120)
T PF02903_consen 19 DGDTLHIRLRTAKNDVEKVFLVYGDPYEEEGKWTYKSVEMEKIASDELFDYYEATLKLPEKRLRYYFELEDGGETYYYGE 98 (120)
T ss_dssp CTTEEEEEEEEETTT-SEEEEEEEETTSETTCECEEEEEEEEEEEESSEEEEEEEEE-TTSEEEEEEEEEETTEEEEEET
T ss_pred CCCEEEEEEEecCCCCCEEEEEECCCccccccceEEEEEeEEEEeCCCeEEEEEEEECCCCeEEEEEEEEeCCEEEEEeC
Confidence 34567777774 4567899885 676666 21 24777642 33458899999999999999998 34 355554
Q ss_pred CC
Q 011043 90 HQ 91 (495)
Q Consensus 90 ~~ 91 (495)
.-
T Consensus 99 ~G 100 (120)
T PF02903_consen 99 RG 100 (120)
T ss_dssp TE
T ss_pred Cc
Confidence 33
No 265
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=67.40 E-value=17 Score=30.96 Aligned_cols=47 Identities=19% Similarity=0.264 Sum_probs=34.3
Q ss_pred eEEEEecCC-CceEEEEEccCCCCC-CCCCCcccCCCCeEEEEEEeCCceEEEE
Q 011043 27 PMRFVWPYG-GRSVFLSGSFNRWSE-LLPMSPVEGCPTVFQIIWSIPPGYHQYK 78 (495)
Q Consensus 27 ~~~f~~~~~-~~~V~v~Gsf~~W~~-~~~m~~~~~~~~~~~~~~~l~~g~~~yk 78 (495)
.|+|+|.+. +.+|...++..-|.. ..+.. -+-.|+.+++- ||.|.|+
T Consensus 63 TVtw~~~d~~~Hnv~~~~~~~~~g~~~~~~~----~~~s~~~Tfe~-~G~Y~Y~ 111 (128)
T COG3794 63 TVTWVNTDSVGHNVTAVGGMDPEGSGTLKAG----INESFTHTFET-PGEYTYY 111 (128)
T ss_pred EEEEEECCCCCceEEEeCCCCcccccccccC----CCcceEEEecc-cceEEEE
Confidence 799999999 899999999854443 22222 24567777774 9999986
No 266
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []. They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.
Probab=56.58 E-value=51 Score=25.64 Aligned_cols=61 Identities=21% Similarity=0.244 Sum_probs=40.7
Q ss_pred CceeeEEEEecCCC---ceEEEEEccC-CCCCCCCCCcccCCCCeEEEEEEeCCceEEEEEEE-C-CEEeeC
Q 011043 23 TVLIPMRFVWPYGG---RSVFLSGSFN-RWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCV-D-GEWRHD 88 (495)
Q Consensus 23 ~~~~~~~f~~~~~~---~~V~v~Gsf~-~W~~~~~m~~~~~~~~~~~~~~~l~~g~~~ykf~v-d-g~w~~d 88 (495)
+.-..+.+.+.+|+ .+|.|.++=+ .|. +|.+. -+..|++.-.++.|-+.+|+.. | |+|+..
T Consensus 11 ~~~l~v~v~n~gG~gdi~~Vevk~~~s~~W~---~m~r~--wGa~W~~~~~~~~~pls~Rvts~~~G~~vv~ 77 (82)
T PF01357_consen 11 PYYLAVLVKNVGGDGDIKAVEVKQSGSGNWI---PMKRS--WGAVWQIDSNPPGGPLSFRVTSGDSGQTVVA 77 (82)
T ss_dssp TTEEEEEEEECCTTS-EEEEEEEETTSSS-E---E-EEE--CTTEEEEE-SS--SSEEEEEEETTTSEEEEE
T ss_pred CcEEEEEEEEcCCCccEEEEEEEeCCCCCce---EeecC--cCceEEECCCCcCCCEEEEEEEcCCCeEEEE
Confidence 34456777777665 5689995544 484 67775 3689999887778899999988 7 888764
No 267
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=56.55 E-value=36 Score=37.54 Aligned_cols=98 Identities=13% Similarity=0.145 Sum_probs=58.4
Q ss_pred HHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhh-cccccCcccccC-----HHHHHHcCCCCCCCccccCCcc
Q 011043 373 LSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD-KAYAHINLSEMT-----IHQALQLGQDSYSPYELRSQRC 446 (495)
Q Consensus 373 l~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~-~~~~~l~~~~~~-----v~~~l~~~~~~~~~~~~m~~~~ 446 (495)
+....+.+...+ ..++++|.+|.++.+....+++..+.. +......|.+.. +..++ ....+
T Consensus 61 l~~l~~~l~~~~-~~~~l~D~~G~vL~~~g~~~~~~~~~~~~~~~G~~w~E~~~GTnaig~al------------~~~~p 127 (638)
T PRK11388 61 LEDAWEYMADRE-CALLILDETGCILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTNALSLAA------------ISGQP 127 (638)
T ss_pred HHHHHHHhcCCC-cEEEEEcCCceEEEEeCCHHHHHHHHHcCCccCCccchhccCcCHHHHHH------------hcCCc
Confidence 444445555555 688899999999999998888765543 222222222211 22222 12345
Q ss_pred eEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehH
Q 011043 447 QMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLS 487 (495)
Q Consensus 447 ~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~ 487 (495)
+.|...+=..+. +..-.....||.|+ +|+++|+|+.+
T Consensus 128 v~v~g~EH~~~~---~~~~~c~aaPI~d~-~G~liGvl~l~ 164 (638)
T PRK11388 128 VKTMGDQHFKQA---LHNWAFCATPVFDS-KGRLTGTIALA 164 (638)
T ss_pred eEEecHHHHHHh---ccCceEEeeEEEcC-CCCEEEEEEEE
Confidence 555555443333 33445567999996 79999999743
No 268
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=53.42 E-value=11 Score=40.54 Aligned_cols=62 Identities=21% Similarity=0.322 Sum_probs=40.5
Q ss_pred CCCCCCCCCcccCCCCeEEEEEEeCCc-eEEEEEEECCE----EeeCCCCCeeeCCCCCeeeEEEecCCCC
Q 011043 47 RWSELLPMSPVEGCPTVFQIIWSIPPG-YHQYKFCVDGE----WRHDEHQPFISSEYGIVNTVLLATEPNF 112 (495)
Q Consensus 47 ~W~~~~~m~~~~~~~~~~~~~~~l~~g-~~~ykf~vdg~----w~~d~~~~~~~~~~g~~nn~~~v~~~~~ 112 (495)
.|.. +.+.|..-.+|.|-+.|+++|| .|.|+|.|+++ |-+......-.+ | +---|.|.....
T Consensus 84 hWhG-v~q~kn~w~DG~~~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~~Ra~--G-~~G~liI~~~~~ 150 (563)
T KOG1263|consen 84 HWHG-VRQRKNPWQDGVYITQCPIQPGENFTYRFTVKDQIGTLWYHSHVSWQRAT--G-VFGALIINPRPG 150 (563)
T ss_pred Eecc-ccccCCccccCCccccCCcCCCCeEEEEEEeCCcceeEEEeecccccccc--C-ceeEEEEcCCcc
Confidence 4654 4444443335688899999999 89999999964 777766665433 2 344455655543
No 269
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=53.37 E-value=26 Score=37.29 Aligned_cols=107 Identities=12% Similarity=0.175 Sum_probs=68.7
Q ss_pred ceeecCCCCHH-HHHHHHHHCCCCEEEEEcCCC-cEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCCCCccc
Q 011043 364 LAMLRPSASLS-AALNLLVQAQVSSIPIVDDND-SLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL 441 (495)
Q Consensus 364 ~~~v~~~~sl~-~a~~~m~~~~~~~lpVvd~~g-~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~ 441 (495)
+..+..+..+. +......+++++++||.+.+. ..+|..=...++.+..... .+...++....
T Consensus 216 ~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~~~~~~~~----~~~~~~v~~~~------------ 279 (498)
T KOG2118|consen 216 VFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLLRLLQVEV----PLEPLPVSESA------------ 279 (498)
T ss_pred heeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhhhhhcccc----ccccccchhhh------------
Confidence 45556666665 555566789999999997532 2233311122222221111 12234444433
Q ss_pred cCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHH
Q 011043 442 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDI 489 (495)
Q Consensus 442 m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DI 489 (495)
..+...++.++++.+.++.+.+.+.|.+.|.. ...-++++++.|+
T Consensus 280 -~~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~--~~~~~~~~~l~~~ 324 (498)
T KOG2118|consen 280 -LLRLPLVPENMPLLDLLNEFQKGKSHMAVVRN--GHVDIFVLTLEDL 324 (498)
T ss_pred -ccccccCCCcccHHHHHHHHhhhhceeEEEec--CCcceeeEeccch
Confidence 45677899999999999999999988777776 3667899999887
No 270
>PF11896 DUF3416: Domain of unknown function (DUF3416); InterPro: IPR021828 This presumed domain is functionally uncharacterised. This domain is found in bacteria and archaea. This domain is about 190 amino acids in length. This domain is found associated with PF00128 from PFAM. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3ZT7_A 3ZST_B 3ZT6_A 3ZSS_D 3ZT5_B.
Probab=51.96 E-value=15 Score=33.58 Aligned_cols=40 Identities=33% Similarity=0.815 Sum_probs=22.4
Q ss_pred CCCCCCCCCCcccCCCCeEEEEEEeC-CceEEEEEE--EC--CEEeeC
Q 011043 46 NRWSELLPMSPVEGCPTVFQIIWSIP-PGYHQYKFC--VD--GEWRHD 88 (495)
Q Consensus 46 ~~W~~~~~m~~~~~~~~~~~~~~~l~-~g~~~ykf~--vd--g~w~~d 88 (495)
..|+. +||.+. .+..|+..+.+. +|.|+|+.. +| +.|+++
T Consensus 55 ~~w~~-vpM~~~--gnDrW~a~f~~~~~G~~~f~VeAW~D~faTW~~~ 99 (187)
T PF11896_consen 55 REWQE-VPMTPL--GNDRWEASFTPDRPGRYEFRVEAWVDHFATWRHD 99 (187)
T ss_dssp -B-----B-EES--TS-EEEEEEE--SSEEEEEEEEEEE-HHHHHHHH
T ss_pred Cccee-eccccC--CCCEEEEEEECCCceeEEEEEEEEeccHHHHHHh
Confidence 35988 799885 588999998865 489998876 34 246654
No 271
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=45.08 E-value=46 Score=25.58 Aligned_cols=29 Identities=21% Similarity=0.430 Sum_probs=22.5
Q ss_pred CCEEEEEcCCCcEEEEEeHHHHHHHHhhc
Q 011043 385 VSSIPIVDDNDSLLDIYCRSDITALAKDK 413 (495)
Q Consensus 385 ~~~lpVvd~~g~lvGivs~~Dl~~~~~~~ 413 (495)
...+-++|++|..+|+++.++.+.++...
T Consensus 12 ~~~VrlI~~~g~~lGv~~~~eAl~~A~~~ 40 (76)
T PF05198_consen 12 APEVRLIDEDGEQLGVMSLREALRLAKEK 40 (76)
T ss_dssp -SEEEEE-TTS-EEEEEEHHHHHHHHHHT
T ss_pred CCEEEEECCCCcEeceEEHHHHHHHHHHc
Confidence 45678899999999999999999887654
No 272
>TIGR03009 plancto_dom_2 Planctomycetes uncharacterized domain TIGR03009. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to four proteins per genome. The function is unknown.
Probab=41.62 E-value=31 Score=32.15 Aligned_cols=16 Identities=6% Similarity=0.276 Sum_probs=11.5
Q ss_pred EE-CCE--EeeCCCCCeee
Q 011043 80 CV-DGE--WRHDEHQPFIS 95 (495)
Q Consensus 80 ~v-dg~--w~~d~~~~~~~ 95 (495)
+| ||+ |.+||....++
T Consensus 67 iVsDGk~lW~YDpdleQVT 85 (210)
T TIGR03009 67 WICNGTAVYAYNGLAKTVT 85 (210)
T ss_pred EEECCCEEEEECCChhhEE
Confidence 44 885 89988877653
No 273
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=40.31 E-value=29 Score=28.17 Aligned_cols=18 Identities=11% Similarity=0.348 Sum_probs=10.3
Q ss_pred CCeEEEEE-EeCCceEEEE
Q 011043 61 PTVFQIIW-SIPPGYHQYK 78 (495)
Q Consensus 61 ~~~~~~~~-~l~~g~~~yk 78 (495)
+..+++++ .+.||.|+|.
T Consensus 73 g~~~~~~f~~~~~G~y~~~ 91 (104)
T PF13473_consen 73 GETATVTFTPLKPGEYEFY 91 (104)
T ss_dssp T-EEEEEEEE-S-EEEEEB
T ss_pred CCEEEEEEcCCCCEEEEEE
Confidence 34566665 7899997763
No 274
>COG1559 Aminodeoxychorismate lyase [Coenzyme transport and metabolism]
Probab=37.92 E-value=4.3e+02 Score=26.70 Aligned_cols=144 Identities=11% Similarity=0.142 Sum_probs=84.9
Q ss_pred CceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccccCccc
Q 011043 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 352 (495)
Q Consensus 273 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 352 (495)
..+.|.+.+++.+....+.+++ ++.-..+++++...... .+.++.|+|
T Consensus 46 ~~v~I~~Gs~~~~i~~~Le~~~---------------------vI~~~~~f~~~~~~~~~-----------~~~lkaG~Y 93 (342)
T COG1559 46 KTVTIPPGSSVSEIGSELEKQK---------------------VIKNARVFRLYLKYNPA-----------AGSLKAGEY 93 (342)
T ss_pred eEEEECCCCCHHHHHHHHHhcC---------------------ccccHHHHHHHHHhcCc-----------cCCcCCcee
Confidence 6788999999999999887764 33335667666654322 222444544
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcC
Q 011043 353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLG 432 (495)
Q Consensus 353 ~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~ 432 (495)
.+.+.++..+++++|.+-+.....++ +.-=.+.+|+...+................+++..-
T Consensus 94 -------------~l~~~ms~~~il~~L~~Gk~~~~~~~-----ipEG~t~~~i~~~l~~~~~l~~~~~~~~~~~~~~~~ 155 (342)
T COG1559 94 -------------RLRPGMSAADILKLLESGKSAQFKVT-----IPEGYTLKQIAKKLAEAPVLDGVLDGLAIAEIAARL 155 (342)
T ss_pred -------------ecCCCCCHHHHHHHHhcCccccceEe-----cCCCccHHHHHHHHhcchhhhhhhhhhhhHHHHHhc
Confidence 46788899999999986554444333 222256777776554332222222223334433221
Q ss_pred C-C-CCCCccccCCcceEecCCCCHHHHHHHHHcCC
Q 011043 433 Q-D-SYSPYELRSQRCQMCLPSDTLHKVMERLANPG 466 (495)
Q Consensus 433 ~-~-~~~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~ 466 (495)
. . .....+..-+.-..++++++-.++++.|.+.-
T Consensus 156 p~~~~~~~EG~l~PdTY~~~~g~~~~~Ii~~mi~~~ 191 (342)
T COG1559 156 PKLDKERLEGYLFPDTYEFTRGTSAEDIIKRMIKAM 191 (342)
T ss_pred CCCcCCCCceeecCceeeeCCCCCHHHHHHHHHHHH
Confidence 1 0 11122333456677889999999999997654
No 275
>PRK10785 maltodextrin glucosidase; Provisional
Probab=37.52 E-value=1e+02 Score=33.70 Aligned_cols=63 Identities=16% Similarity=0.190 Sum_probs=42.0
Q ss_pred CCceeeEEEEecCC--CceEEEEEccCCCCCCCCCCcccCCC--CeEEEEEEeC--CceEEEEEEE--CCE
Q 011043 22 DTVLIPMRFVWPYG--GRSVFLSGSFNRWSELLPMSPVEGCP--TVFQIIWSIP--PGYHQYKFCV--DGE 84 (495)
Q Consensus 22 ~~~~~~~~f~~~~~--~~~V~v~Gsf~~W~~~~~m~~~~~~~--~~~~~~~~l~--~g~~~ykf~v--dg~ 84 (495)
....+.++++=+.+ .++|.|.=.+++-....+|.+....+ ..|+++++++ ++.+.|.|.+ +|+
T Consensus 17 ~~~~~~~~lr~~~~~~~~~v~l~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~Y~F~l~~~~~ 87 (598)
T PRK10785 17 SKDQLLITLWLTGEDPPQRVMLRCEPDNEEYLLPMEKQRSQPQVTAWRASLPLNSGQPRRRYSFKLLWHDR 87 (598)
T ss_pred CCCEEEEEEEEcCCCceEEEEEEEEcCCCEEEEEeEEeecCCCceEEEEEEEcCCCCceEEEEEEEEeCCE
Confidence 33457777764432 47899876666544456888753222 3599999886 6889999988 553
No 276
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=37.48 E-value=1.1e+02 Score=25.56 Aligned_cols=47 Identities=15% Similarity=0.097 Sum_probs=25.8
Q ss_pred eEEEEecCCCceEEEE-EccCCCCCCCCCCcccCCCCeEEEEEEeCCceEEEE
Q 011043 27 PMRFVWPYGGRSVFLS-GSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYK 78 (495)
Q Consensus 27 ~~~f~~~~~~~~V~v~-Gsf~~W~~~~~m~~~~~~~~~~~~~~~l~~g~~~yk 78 (495)
.|+|+|..++.+|... +... +... .... +.+..|+.+++ .||.|.|.
T Consensus 24 TV~f~n~d~~Hnv~~~~~~~p-~g~~-~~~s--~~g~~~~~tF~-~~G~Y~Y~ 71 (116)
T TIGR02375 24 TVTFVPTDKGHNVETIKGMIP-EGAE-AFKS--KINEEYTVTVT-EEGVYGVK 71 (116)
T ss_pred EEEEEECCCCeeEEEccCCCc-CCcc-cccC--CCCCEEEEEeC-CCEEEEEE
Confidence 7899999888776642 2111 1110 1111 12455777776 57777775
No 277
>PF14347 DUF4399: Domain of unknown function (DUF4399)
Probab=36.63 E-value=64 Score=25.51 Aligned_cols=32 Identities=25% Similarity=0.449 Sum_probs=24.7
Q ss_pred CCeEEEEEEeCCceEEEEEEECCEEeeCCCCCe
Q 011043 61 PTVFQIIWSIPPGYHQYKFCVDGEWRHDEHQPF 93 (495)
Q Consensus 61 ~~~~~~~~~l~~g~~~ykf~vdg~w~~d~~~~~ 93 (495)
+|.=++.++|+||+|...-+. |.+.+-+..|.
T Consensus 50 ~Gqte~~I~L~PG~htLtl~~-~d~~h~~~~~~ 81 (87)
T PF14347_consen 50 KGQTELNIELPPGKHTLTLQL-GDGDHVPHDPP 81 (87)
T ss_pred CCEEEEEEEeCCCCEEEEEEe-CCCCcccCCCc
Confidence 466778899999999999887 44566666654
No 278
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=35.72 E-value=82 Score=33.64 Aligned_cols=129 Identities=15% Similarity=0.162 Sum_probs=84.0
Q ss_pred HHhhhccccccCCCCcceEEecCCCCHH-HHHHHHHHcCCcEeeeeeCCCCeEEEEeehHHHHHHHHHHhcCCCCCChhh
Q 011043 165 VFLSTHTAYELLPESGKVVALDIDLPVK-QAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEE 243 (495)
Q Consensus 165 ~~l~~~~~~d~~p~s~~vi~l~~~~~v~-~A~~~l~e~~i~~~Pv~d~~~~~~vGilt~~Dii~~l~~~~~~~~~l~~~~ 243 (495)
.-|...++.|+|-+...+..++.+..+. +......+.|..++||++.+....+|.+=....+.++.. ..++
T Consensus 199 l~l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~~~~~~----~~~~---- 270 (498)
T KOG2118|consen 199 LELTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLLRLLQV----EVPL---- 270 (498)
T ss_pred HHHHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhhhhhcc----cccc----
Confidence 4445566777787888999999988887 555566699999999999775555544211222222210 0011
Q ss_pred HhhhhHHHHHHHHhhhccccCCCCcccCCCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHH
Q 011043 244 LETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGIL 323 (495)
Q Consensus 244 l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl 323 (495)
....|. ..+..++..+++++++.+.++.+.+.+.|.+.|.. .. --+++++..++
T Consensus 271 ----~~~~v~--------------~~~~~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~----~~---~~~~~~~l~~~- 324 (498)
T KOG2118|consen 271 ----EPLPVS--------------ESALLRLPLVPENMPLLDLLNEFQKGKSHMAVVRN----GH---VDIFVLTLEDL- 324 (498)
T ss_pred ----ccccch--------------hhhccccccCCCcccHHHHHHHHhhhhceeEEEec----CC---cceeeEeccch-
Confidence 111122 12345677788999999999999888888887772 22 46888888887
Q ss_pred HHHH
Q 011043 324 KCVC 327 (495)
Q Consensus 324 ~~l~ 327 (495)
..+.
T Consensus 325 ~~~~ 328 (498)
T KOG2118|consen 325 EEVV 328 (498)
T ss_pred hhhc
Confidence 4444
No 279
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=34.68 E-value=76 Score=32.34 Aligned_cols=42 Identities=12% Similarity=0.203 Sum_probs=29.0
Q ss_pred EEEEccCCCCCCCCCCcccCCCCeEEEEEE--eCCceEEEEEEECCE
Q 011043 40 FLSGSFNRWSELLPMSPVEGCPTVFQIIWS--IPPGYHQYKFCVDGE 84 (495)
Q Consensus 40 ~v~Gsf~~W~~~~~m~~~~~~~~~~~~~~~--l~~g~~~ykf~vdg~ 84 (495)
.+.|+|.+ ....+... ..+|.|+..++ .+||+|+.++.++|.
T Consensus 152 ~vvg~f~D--dG~g~DE~-p~DGvFT~~l~l~~~~G~Y~~~v~~~n~ 195 (374)
T TIGR03503 152 IVVGEFED--DGEGLDER-PGDGIFTGEFNLDVAPGEYRPTYQSRNP 195 (374)
T ss_pred EEEEeecc--CCccCCCC-CCCceEEEEeeccCCCceEEEEEEEcCc
Confidence 46677752 22233222 25799998865 678999999999985
No 280
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=32.01 E-value=1.1e+02 Score=33.81 Aligned_cols=96 Identities=13% Similarity=0.066 Sum_probs=53.9
Q ss_pred HHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHh-hhccCCCCCcccccccccccCcccccccCCCCCCCcee
Q 011043 288 RKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCR-YFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAM 366 (495)
Q Consensus 288 ~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~-~~~~~~~~~~~l~~~v~~l~i~~~~~~v~~~m~~~~~~ 366 (495)
+.+...+ ..+.+. +.+| .++.+....++++.+.. .+... ..+....++.-.+|+.. ....++.
T Consensus 66 ~~l~~~~-~~~~l~---D~~G---~vL~~~g~~~~~~~~~~~~~~~G---~~w~E~~~GTnaig~al------~~~~pv~ 129 (638)
T PRK11388 66 EYMADRE-CALLIL---DETG---CILSRNGDPQTLQQLSALGFNDG---TYCAEGIIGTNALSLAA------ISGQPVK 129 (638)
T ss_pred HHhcCCC-cEEEEE---cCCc---eEEEEeCCHHHHHHHHHcCCccC---CccchhccCcCHHHHHH------hcCCceE
Confidence 3444344 667777 5678 89999998888776644 11110 01112222222233322 1233445
Q ss_pred ecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEe
Q 011043 367 LRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYC 402 (495)
Q Consensus 367 v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs 402 (495)
|....-..+. +......+.||.|.+|+++|+++
T Consensus 130 v~g~EH~~~~---~~~~~c~aaPI~d~~G~liGvl~ 162 (638)
T PRK11388 130 TMGDQHFKQA---LHNWAFCATPVFDSKGRLTGTIA 162 (638)
T ss_pred EecHHHHHHh---ccCceEEeeEEEcCCCCEEEEEE
Confidence 5544433333 34445678999999999999996
No 281
>KOG2635 consensus Medium subunit of clathrin adaptor complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.32 E-value=1.4e+02 Score=30.92 Aligned_cols=71 Identities=18% Similarity=0.250 Sum_probs=40.9
Q ss_pred CceeeEEEE-ecCC-CceEEEEEccCCCCCCCCCCcccCCCCeEEEEEEeCCceEEEEEEECCEEeeCCCCCeeeCCCCC
Q 011043 23 TVLIPMRFV-WPYG-GRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWRHDEHQPFISSEYGI 100 (495)
Q Consensus 23 ~~~~~~~f~-~~~~-~~~V~v~Gsf~~W~~~~~m~~~~~~~~~~~~~~~l~~g~~~ykf~vdg~w~~d~~~~~~~~~~g~ 100 (495)
.-.+|.+|. ||.. +....|.=.+.- .....| +.-.++++||.+.-.=-=.+||+|++|+.... .
T Consensus 374 es~iPlTincWPSes~~g~dV~iEYe~-~~~~eL-------~dV~i~iPlP~~iapsv~~~Dge~~~~~~~~~------l 439 (512)
T KOG2635|consen 374 ESEIPLTINCWPSESGNGYDVNIEYEA-VLECEL-------NDVIITIPLPANIAPSVGECDGEYRYDERKNV------L 439 (512)
T ss_pred cccCceEEEeccccCCCCeEEEEEEee-hhcccc-------cceEEEeecccccCCccceecceEEeccccce------e
Confidence 456788887 8765 333444433332 111122 22456677777763333457999999987643 3
Q ss_pred eeeEEEe
Q 011043 101 VNTVLLA 107 (495)
Q Consensus 101 ~nn~~~v 107 (495)
..++..+
T Consensus 440 eW~I~~I 446 (512)
T KOG2635|consen 440 EWSIGVI 446 (512)
T ss_pred EEEeeee
Confidence 5677666
No 282
>PF03370 CBM_21: Putative phosphatase regulatory subunit; InterPro: IPR005036 This family consists of several eukaryotic proteins that are thought to be involved in the regulation of glycogen metabolism. For instance, the mouse PTG protein O08541 from SWISSPROT has been shown to interact with glycogen synthase, phosphorylase kinase, phosphorylase a: these three enzymes have key roles in the regulation of glycogen metabolism. PTG also binds the catalytic subunit of protein phosphatase 1 (PP1C) and localizes it to glycogen. Subsets of similar interactions have been observed with several other members of this family, such as the yeast PIG1, PIG2, GAC1 and GIP2 proteins. While the precise function of these proteins is not known, they may serve a scaffold function, bringing together the key enzymes in glycogen metabolism. This entry is a carbohydrate binding domain.; GO: 0005515 protein binding; PDB: 2V8M_D 2V8L_A 2VQ4_A 2EEF_A 2DJM_A.
Probab=28.67 E-value=1.3e+02 Score=24.92 Aligned_cols=49 Identities=18% Similarity=0.367 Sum_probs=32.0
Q ss_pred CceEEEEEccCCCCCCCCCCc--cc--------CCCCeEEEEEEeCCc--------eEEEEEEECCE
Q 011043 36 GRSVFLSGSFNRWSELLPMSP--VE--------GCPTVFQIIWSIPPG--------YHQYKFCVDGE 84 (495)
Q Consensus 36 ~~~V~v~Gsf~~W~~~~~m~~--~~--------~~~~~~~~~~~l~~g--------~~~ykf~vdg~ 84 (495)
.|+|.|.=+|++|+....+.. .. ..-..|...++|++. .+--+|.++|+
T Consensus 33 eK~V~VryT~D~W~t~~d~~a~y~~~~~~~~~~~~~d~F~F~i~l~~~~~~~~~~lef~I~Y~~~g~ 99 (113)
T PF03370_consen 33 EKEVTVRYTFDNWRTFSDVPASYVSSCPGPSPSGNYDRFSFSIPLPDLLPPEGGRLEFCIRYEVNGQ 99 (113)
T ss_dssp SEEEEEEEETSCTSSCCEEEEEEEE---EESTTSSEEEEEEEEE-SSE--T-TS-SEEEEEEEETTE
T ss_pred CeEEEEEEeeCCCCceeEEeeEEeccccCCCCCCcccEEEEEEECCcccccCCceEEEEEEEEeCCC
Confidence 478999999999986433221 00 122478888888754 46668888886
No 283
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=28.52 E-value=42 Score=24.31 Aligned_cols=25 Identities=32% Similarity=0.686 Sum_probs=14.8
Q ss_pred EEE-EEeCCceEEEEEEE---CCEEeeCC
Q 011043 65 QII-WSIPPGYHQYKFCV---DGEWRHDE 89 (495)
Q Consensus 65 ~~~-~~l~~g~~~ykf~v---dg~w~~d~ 89 (495)
++. -.||||.|.++-.+ +|.|..++
T Consensus 30 ~~~~~~L~~G~Y~l~V~a~~~~~~~~~~~ 58 (66)
T PF07495_consen 30 SISYTNLPPGKYTLEVRAKDNNGKWSSDE 58 (66)
T ss_dssp EEEEES--SEEEEEEEEEEETTS-B-SS-
T ss_pred EEEEEeCCCEEEEEEEEEECCCCCcCccc
Confidence 555 46999999988877 57787664
No 284
>PRK10301 hypothetical protein; Provisional
Probab=26.70 E-value=3.5e+02 Score=22.81 Aligned_cols=61 Identities=18% Similarity=0.215 Sum_probs=33.0
Q ss_pred CceeeEEEEecCC--CceEEEEEccC-CCCCCCCCCcccCCCCeEEEEE--EeCCceEEEEEEE---CCE
Q 011043 23 TVLIPMRFVWPYG--GRSVFLSGSFN-RWSELLPMSPVEGCPTVFQIIW--SIPPGYHQYKFCV---DGE 84 (495)
Q Consensus 23 ~~~~~~~f~~~~~--~~~V~v~Gsf~-~W~~~~~m~~~~~~~~~~~~~~--~l~~g~~~ykf~v---dg~ 84 (495)
+..|..+|.=+-. ...+.|.+.-- .|... +-......+..+.+.+ .|++|.|.-.|.| ||+
T Consensus 45 P~~V~L~F~e~v~~~~s~i~v~~~~g~~v~~~-~~~~~~~~~~~~~v~l~~~L~~G~YtV~Wrvvs~DGH 113 (124)
T PRK10301 45 PQALTLNFSEGIEPGFSGATITGPKQENIKTL-PAKRNEQDQKQLIVPLADSLKPGTYTVDWHVVSVDGH 113 (124)
T ss_pred CCEEEEEcCCCccccccEEEEEcCCCCEeccC-CccccCCCCcEEEEECCCCCCCccEEEEEEEEecCCC
Confidence 4455555543322 34577765421 23321 1111122345677766 3889999999988 765
No 285
>PF04985 Phage_tube: Phage tail tube protein FII; InterPro: IPR006498 This entry is represented by Bacteriophage P2, FII, the major tail tube protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The tails of some phage are contractile. These sequences represent the tail tube, or tail core, protein of the contractile tail of phage P2, and homologous proteins from other phage.
Probab=24.80 E-value=2e+02 Score=25.57 Aligned_cols=48 Identities=23% Similarity=0.282 Sum_probs=30.4
Q ss_pred eEEEEEccCCCCCCCCCCcccCCCCeEEEEEEeCCceEEEEEEECCE--EeeCCCCC
Q 011043 38 SVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGE--WRHDEHQP 92 (495)
Q Consensus 38 ~V~v~Gsf~~W~~~~~m~~~~~~~~~~~~~~~l~~g~~~ykf~vdg~--w~~d~~~~ 92 (495)
.+.+.|.+..|... .+++ +.....++.+. -++||+.+||+ +-.|..+.
T Consensus 99 ~~~~~G~~~~~~~g-~~k~--g~~~~~~~~~~----v~yyk~~idG~~~~eiD~~n~ 148 (167)
T PF04985_consen 99 VAVIRGRIKSVDPG-EWKP--GEKTETSIEFS----VTYYKLEIDGKEIIEIDKLNN 148 (167)
T ss_pred EEEEEEEEEeeCCc-ccCc--CccccceEEEE----EEEEEEEECCEEEEEEECccC
Confidence 36778888888663 3333 22334444443 57999999996 66665554
No 286
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=24.32 E-value=89 Score=25.57 Aligned_cols=67 Identities=19% Similarity=0.231 Sum_probs=36.4
Q ss_pred HHHhhhccccccCCCCcceEEecCCCCHHHHHHHHHHcCCcEee---eeeCCCC----eEEEEeehHHHHHHHHHH
Q 011043 164 SVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAP---LWDFSKA----RFVGVLSASDFILILREL 232 (495)
Q Consensus 164 ~~~l~~~~~~d~~p~s~~vi~l~~~~~v~~A~~~l~e~~i~~~P---v~d~~~~----~~vGilt~~Dii~~l~~~ 232 (495)
++.|++..+.+.+-.+-=.+.++.+. .++.+.+...++...| ++|+.+| ++.|.++..+++..|...
T Consensus 37 ~~vl~~~~v~~~l~~~~v~~~~d~~~--~e~~~~~~~~~~~~~P~~~~i~~~~g~~l~~~~G~~~~~~f~~~L~~~ 110 (114)
T cd02958 37 RDLWSNESVKEFIRENFIFWQCDIDS--SEGQRFLQSYKVDKYPHIAIIDPRTGEVLKVWSGNITPEDLLSQLIEF 110 (114)
T ss_pred HHHcCCHHHHHHHHhCEEEEEecCCC--ccHHHHHHHhCccCCCeEEEEeCccCcEeEEEcCCCCHHHHHHHHHHH
Confidence 33444444444443322223334433 3455555555555555 6777444 445889999998888653
No 287
>KOG0045 consensus Cytosolic Ca2+-dependent cysteine protease (calpain), large subunit (EF-Hand protein superfamily) [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=24.09 E-value=72 Score=34.95 Aligned_cols=27 Identities=26% Similarity=0.610 Sum_probs=22.2
Q ss_pred CCceEEEEEEECCEE---eeCCCCCeeeCC
Q 011043 71 PPGYHQYKFCVDGEW---RHDEHQPFISSE 97 (495)
Q Consensus 71 ~~g~~~ykf~vdg~w---~~d~~~~~~~~~ 97 (495)
..|.|+|||.++|+| ++|+.-|+..+.
T Consensus 115 yaGif~f~~w~~G~W~~VvIDD~LP~~~~~ 144 (612)
T KOG0045|consen 115 YAGIFHFRFWQNGEWVEVVIDDRLPTSNGG 144 (612)
T ss_pred cceEEEEEEEeCCeEEEEEeeeecceEcCC
Confidence 358999999999999 468888887654
No 288
>PF07483 W_rich_C: Tryptophan-rich Synechocystis species C-terminal domain; InterPro: IPR011121 This entry represents a tryptophan-rich domain found in membrane proteins of Synechocystis and Bradyrhizobium; it is normally found in 2 to 3 copies.
Probab=23.29 E-value=1.5e+02 Score=24.52 Aligned_cols=45 Identities=16% Similarity=0.359 Sum_probs=29.1
Q ss_pred eEEEEEccCCCCCCCCCCcccCCCCeEEEEEEeCCceEEEEEEECCEE
Q 011043 38 SVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEW 85 (495)
Q Consensus 38 ~V~v~Gsf~~W~~~~~m~~~~~~~~~~~~~~~l~~g~~~ykf~vdg~w 85 (495)
..++.|+|.+|++- .-.. ..+|.|++-..-+--.+.|-..+|+.|
T Consensus 30 ~~~~~g~~g~W~~i-aA~e--t~~GgyqVlWk~~~~~~~~vW~tDsng 74 (109)
T PF07483_consen 30 QPVVAGQFGGWQPI-AAEE--TSNGGYQVLWKNPGTDQFGVWNTDSNG 74 (109)
T ss_pred EEEecCccCCccee-eeEE--ecCCeeEEEEecCCCCeEEEEEecCCC
Confidence 56889999999983 3222 346889999884333444445555543
No 289
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=21.95 E-value=1.6e+02 Score=22.52 Aligned_cols=25 Identities=12% Similarity=0.393 Sum_probs=18.2
Q ss_pred CcEEEEEeCCCCeEEEEEehHHHHHH
Q 011043 467 VRRLVIVEAGSKRVEGIVSLSDIFKF 492 (495)
Q Consensus 467 ~~~l~VVd~~~~~lvGiIs~~DIl~~ 492 (495)
...+-|||+ +|..+|++++.+-++.
T Consensus 12 ~~~VrlI~~-~g~~lGv~~~~eAl~~ 36 (76)
T PF05198_consen 12 APEVRLIDE-DGEQLGVMSLREALRL 36 (76)
T ss_dssp -SEEEEE-T-TS-EEEEEEHHHHHHH
T ss_pred CCEEEEECC-CCcEeceEEHHHHHHH
Confidence 356778885 7999999999998764
No 290
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=21.93 E-value=3.9e+02 Score=22.28 Aligned_cols=47 Identities=21% Similarity=0.354 Sum_probs=26.1
Q ss_pred eEEEEecCC--CceEEEEEccCCCCCCCCCCcccCCCCeEEEEEEeCCceEEEE
Q 011043 27 PMRFVWPYG--GRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYK 78 (495)
Q Consensus 27 ~~~f~~~~~--~~~V~v~Gsf~~W~~~~~m~~~~~~~~~~~~~~~l~~g~~~yk 78 (495)
.|+|+|... +.+|...+. ..|.....+. ..+..|+.++. .||.|.|.
T Consensus 51 TVtw~~~~d~~~HnV~s~~~-~~f~s~~~~~---~~G~t~s~Tf~-~~G~Y~Y~ 99 (115)
T TIGR03102 51 TVVWEWTGEGGGHNVVSDGD-GDLDESERVS---EEGTTYEHTFE-EPGIYLYV 99 (115)
T ss_pred EEEEEECCCCCCEEEEECCC-CCcccccccc---CCCCEEEEEec-CCcEEEEE
Confidence 678888753 455654310 2344211111 12457888886 68988886
No 291
>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains. The B region domain of Cna has a prealbumin-like beta-sandwich fold of seven strands in two sheets with a Greek key topology []. However, this domain does not mediate collagen binding, the IPR008456 from INTERPRO region carries out that function; instead it appears to form a stalk that presents the ligand binding domain away from the bacterial cell surface. Cna is a collagen-binding MSCRAMM (Microbial Surface Component Recognizing Adhesive Matrix Molecules), and is necessary and sufficient for S. aureus cells to adhere to cartilage.; PDB: 2X5P_A 3RKP_A 3KPT_A 1VLF_T 1TI2_F 1TI6_D 1TI4_J 1VLE_V 1VLD_X 3PF2_A ....
Probab=21.93 E-value=2e+02 Score=20.91 Aligned_cols=34 Identities=24% Similarity=0.272 Sum_probs=21.8
Q ss_pred CCCeEEEEEEeCCceEEEEEEE--CCEEeeCCCCCee
Q 011043 60 CPTVFQIIWSIPPGYHQYKFCV--DGEWRHDEHQPFI 94 (495)
Q Consensus 60 ~~~~~~~~~~l~~g~~~ykf~v--dg~w~~d~~~~~~ 94 (495)
.+|.|... .|++|.|..+... +|--..++...+.
T Consensus 25 ~~G~~~f~-~L~~G~Y~l~E~~aP~GY~~~~~~~~~~ 60 (70)
T PF05738_consen 25 ENGKYTFK-NLPPGTYTLKETKAPDGYQLDDTPYEFT 60 (70)
T ss_dssp TTSEEEEE-EEESEEEEEEEEETTTTEEEEECEEEEE
T ss_pred CCCEEEEe-ecCCeEEEEEEEECCCCCEECCCceEEE
Confidence 45666554 6899999999987 6743333333333
No 292
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=21.57 E-value=2.3e+02 Score=24.44 Aligned_cols=51 Identities=20% Similarity=0.322 Sum_probs=30.2
Q ss_pred cCCCceEEEEEccCCCCCCCCCCcccCCCCeEEEEE---EeCCceEEEEEEE---CCEEeeCC
Q 011043 33 PYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIW---SIPPGYHQYKFCV---DGEWRHDE 89 (495)
Q Consensus 33 ~~~~~~V~v~Gsf~~W~~~~~m~~~~~~~~~~~~~~---~l~~g~~~ykf~v---dg~w~~d~ 89 (495)
..+++.+....+..+. .|.|. +.-.|.+.+ .|+||.|.++-.+ ++.|....
T Consensus 69 ~~~~~k~~~~~~~~~~----~mAPN--S~f~~~i~~~~~~lk~G~Y~l~~~~~~~~~~W~f~k 125 (140)
T PF11797_consen 69 KKGSKKVLYTFKKENM----QMAPN--SNFNFPIPLGGKKLKPGKYTLKITAKSGKKTWTFTK 125 (140)
T ss_pred ECCCCeEEEEeeccCC----EECCC--CeEEeEecCCCcCccCCEEEEEEEEEcCCcEEEEEE
Confidence 3344566666666544 34442 223344444 4789999999888 34687654
No 293
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=21.42 E-value=2.2e+02 Score=21.84 Aligned_cols=48 Identities=13% Similarity=0.242 Sum_probs=26.7
Q ss_pred eEEEEecCC-CceEE-EEEccCCCCCCCCCCcccCCCCeEEEEEEeCCceEEEE
Q 011043 27 PMRFVWPYG-GRSVF-LSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYK 78 (495)
Q Consensus 27 ~~~f~~~~~-~~~V~-v~Gsf~~W~~~~~m~~~~~~~~~~~~~~~l~~g~~~yk 78 (495)
+++|++..+ +.+|. ..|.+.++.-.-++. ..+..|+.++. .||.|.|.
T Consensus 20 tVt~~N~d~~~Hnv~~~~g~~~~~~~~~~~~---~~g~~~~~tf~-~~G~y~y~ 69 (83)
T TIGR02657 20 TVTWINREAMPHNVHFVAGVLGEAALKGPMM---KKEQAYSLTFT-EAGTYDYH 69 (83)
T ss_pred EEEEEECCCCCccEEecCCCCcccccccccc---CCCCEEEEECC-CCEEEEEE
Confidence 577887765 45554 445554433211221 12456777776 67877664
No 294
>PLN02792 oxidoreductase
Probab=21.06 E-value=80 Score=34.08 Aligned_cols=47 Identities=23% Similarity=0.351 Sum_probs=29.9
Q ss_pred CCCCCCCCCcccCCCCeEEEEEEeCCc-eEEEEEEEC---C-EEeeCCCCCee
Q 011043 47 RWSELLPMSPVEGCPTVFQIIWSIPPG-YHQYKFCVD---G-EWRHDEHQPFI 94 (495)
Q Consensus 47 ~W~~~~~m~~~~~~~~~~~~~~~l~~g-~~~ykf~vd---g-~w~~d~~~~~~ 94 (495)
.|.. +.+....-.+|+..+.|+++|| .|.|+|.+. | -|-|.......
T Consensus 72 HWHG-l~q~~~~~~DGv~~tqcPI~PG~sftY~F~~~~q~GT~WYHsH~~~q~ 123 (536)
T PLN02792 72 SWNG-VHMRKNSYQDGVYGTTCPIPPGKNYTYDFQVKDQVGSYFYFPSLAVQK 123 (536)
T ss_pred eCCC-cccCCCCccCCCCCCcCccCCCCcEEEEEEeCCCccceEEecCcchhh
Confidence 4765 3333321235655566999998 799999994 3 28888765443
No 295
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=20.25 E-value=75 Score=34.75 Aligned_cols=48 Identities=17% Similarity=0.137 Sum_probs=31.8
Q ss_pred CCeEEEEEEeCCc-eEEEEEEEC---C-EEeeCCCCCeeeCCCCCeeeEEEecCCC
Q 011043 61 PTVFQIIWSIPPG-YHQYKFCVD---G-EWRHDEHQPFISSEYGIVNTVLLATEPN 111 (495)
Q Consensus 61 ~~~~~~~~~l~~g-~~~ykf~vd---g-~w~~d~~~~~~~~~~g~~nn~~~v~~~~ 111 (495)
+|+..+.|+++|| .|.|+|.+. | -|-|.....+..+ ++.--|.|+.++
T Consensus 98 DGv~~TQcPI~PG~sftY~F~~~dq~GT~WYHsH~~~Q~~~---Gl~GalII~~~~ 150 (596)
T PLN00044 98 DGVGGTNCAIPAGWNWTYQFQVKDQVGSFFYAPSTALHRAA---GGYGAITINNRD 150 (596)
T ss_pred cCCCCCcCCcCCCCcEEEEEEeCCCCceeEeeccchhhhhC---cCeeEEEEcCcc
Confidence 4554466999998 899999994 3 2888865544443 245556666543
Done!