Query 011043
Match_columns 495
No_of_seqs 544 out of 4154
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 19:37:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011043.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011043hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t4n_C Nuclear protein SNF4; C 100.0 2.4E-39 8E-44 323.5 31.8 309 152-495 12-320 (323)
2 2qrd_G Protein C1556.08C; AMPK 100.0 6.8E-34 2.3E-38 285.2 33.7 305 154-494 6-314 (334)
3 2v8q_E 5'-AMP-activated protei 100.0 2.5E-34 8.5E-39 288.0 29.2 298 159-494 24-322 (330)
4 3kh5_A Protein MJ1225; AMPK, A 100.0 8.5E-32 2.9E-36 262.6 24.1 269 171-493 4-279 (280)
5 3ddj_A CBS domain-containing p 100.0 8.9E-31 3.1E-35 258.0 20.4 262 170-494 20-284 (296)
6 2yzq_A Putative uncharacterize 100.0 1.1E-28 3.8E-33 241.0 18.0 256 180-494 9-278 (282)
7 1z0n_A 5'-AMP-activated protei 99.9 1.6E-24 5.6E-29 175.1 11.2 88 21-112 6-93 (96)
8 2qlv_B Protein SIP2, protein S 99.9 4.8E-24 1.6E-28 201.7 11.2 90 24-113 2-91 (252)
9 3kh5_A Protein MJ1225; AMPK, A 99.9 4.7E-22 1.6E-26 193.4 20.4 196 268-494 8-204 (280)
10 3ddj_A CBS domain-containing p 99.9 2.5E-22 8.4E-27 197.5 13.5 193 265-494 21-213 (296)
11 3nme_A Ptpkis1 protein, SEX4 g 99.9 9E-22 3.1E-26 192.6 10.4 86 23-109 167-254 (294)
12 2v8q_E 5'-AMP-activated protei 99.9 5.6E-21 1.9E-25 190.9 16.1 208 266-494 37-250 (330)
13 3t4n_C Nuclear protein SNF4; C 99.8 9.1E-20 3.1E-24 181.4 19.5 186 180-412 122-320 (323)
14 2yzq_A Putative uncharacterize 99.8 1.5E-20 5.1E-25 183.2 10.2 174 268-490 5-179 (282)
15 2qrd_G Protein C1556.08C; AMPK 99.8 1.7E-19 5.9E-24 180.3 15.8 211 265-494 23-242 (334)
16 4esy_A CBS domain containing m 99.8 1.9E-19 6.3E-24 162.3 8.7 136 357-495 21-162 (170)
17 3lv9_A Putative transporter; C 99.7 1.8E-17 6.1E-22 145.6 13.3 118 356-495 25-145 (148)
18 3i8n_A Uncharacterized protein 99.7 1.3E-17 4.5E-22 143.1 12.0 120 355-495 7-129 (130)
19 3k6e_A CBS domain protein; str 99.7 9E-18 3.1E-22 149.1 10.5 117 362-494 25-141 (156)
20 3nqr_A Magnesium and cobalt ef 99.7 7.1E-18 2.4E-22 144.2 9.2 118 357-495 6-126 (127)
21 3lhh_A CBS domain protein; str 99.7 5.9E-17 2E-21 146.2 14.6 119 355-495 43-164 (172)
22 3hf7_A Uncharacterized CBS-dom 99.7 2.1E-17 7.3E-22 141.9 10.5 120 357-495 5-127 (130)
23 3kpb_A Uncharacterized protein 99.7 2E-17 6.7E-22 140.0 10.1 116 357-494 4-119 (122)
24 3jtf_A Magnesium and cobalt ef 99.7 1.2E-17 4E-22 143.3 8.6 116 357-495 8-126 (129)
25 1pbj_A Hypothetical protein; s 99.7 1E-16 3.5E-21 136.0 12.5 118 357-494 4-121 (125)
26 3lfr_A Putative metal ION tran 99.7 3.3E-17 1.1E-21 141.8 8.3 119 357-495 6-127 (136)
27 2nyc_A Nuclear protein SNF4; b 99.7 3.3E-16 1.1E-20 136.2 14.7 124 360-494 17-140 (144)
28 2rih_A Conserved protein with 99.7 1.2E-16 4.1E-21 139.0 11.8 119 355-493 6-126 (141)
29 3oco_A Hemolysin-like protein 99.7 6.6E-17 2.3E-21 142.8 10.1 114 360-495 26-143 (153)
30 3k2v_A Putative D-arabinose 5- 99.7 1.3E-16 4.4E-21 140.3 11.7 118 355-491 29-148 (149)
31 2uv4_A 5'-AMP-activated protei 99.7 1.4E-16 4.6E-21 140.6 11.9 135 340-494 16-150 (152)
32 4esy_A CBS domain containing m 99.7 6.4E-17 2.2E-21 145.6 9.6 155 159-328 7-162 (170)
33 1y5h_A Hypothetical protein RV 99.7 7.7E-17 2.6E-21 138.6 9.6 119 358-495 12-131 (133)
34 2o16_A Acetoin utilization pro 99.7 3E-16 1E-20 139.7 13.7 124 356-494 7-134 (160)
35 4gqw_A CBS domain-containing p 99.7 1.3E-16 4.4E-21 140.1 10.8 126 355-494 6-142 (152)
36 2p9m_A Hypothetical protein MJ 99.7 3.7E-16 1.3E-20 135.1 13.5 120 356-494 10-135 (138)
37 3ocm_A Putative membrane prote 99.7 3E-16 1E-20 141.8 13.2 117 356-495 38-157 (173)
38 3gby_A Uncharacterized protein 99.7 6.4E-17 2.2E-21 138.3 8.3 119 356-494 7-125 (128)
39 3fv6_A YQZB protein; CBS domai 99.7 2E-16 6.9E-21 140.6 11.7 120 356-494 19-143 (159)
40 2yzi_A Hypothetical protein PH 99.7 5.2E-16 1.8E-20 134.2 13.9 119 356-494 9-128 (138)
41 2ef7_A Hypothetical protein ST 99.7 3E-16 1E-20 134.8 11.5 119 356-494 6-124 (133)
42 2pfi_A Chloride channel protei 99.7 4.8E-16 1.6E-20 138.5 12.7 129 357-494 16-146 (164)
43 3ctu_A CBS domain protein; str 99.7 1.5E-16 5.2E-21 140.8 9.1 119 360-494 21-141 (156)
44 3fhm_A Uncharacterized protein 99.7 1.9E-16 6.6E-21 141.7 9.8 119 358-494 28-149 (165)
45 3l2b_A Probable manganase-depe 99.7 1.3E-15 4.6E-20 145.3 16.0 200 266-493 9-242 (245)
46 1o50_A CBS domain-containing p 99.7 1E-15 3.5E-20 135.7 13.3 124 355-494 17-152 (157)
47 3kxr_A Magnesium transporter, 99.6 1.7E-15 5.9E-20 140.6 15.3 160 220-413 13-175 (205)
48 3lqn_A CBS domain protein; csg 99.6 5.5E-16 1.9E-20 136.2 11.3 119 360-494 21-142 (150)
49 3sl7_A CBS domain-containing p 99.6 4.4E-16 1.5E-20 140.9 10.2 124 357-494 7-155 (180)
50 1vr9_A CBS domain protein/ACT 99.6 1.1E-15 3.7E-20 142.9 12.8 158 265-474 14-171 (213)
51 2emq_A Hypothetical conserved 99.6 1.6E-15 5.5E-20 134.2 13.3 123 356-494 13-138 (157)
52 2rc3_A CBS domain; in SITU pro 99.6 5.7E-16 1.9E-20 133.5 9.9 119 358-495 10-131 (135)
53 1pvm_A Conserved hypothetical 99.6 1.1E-15 3.7E-20 139.4 12.3 123 355-494 10-132 (184)
54 3lhh_A CBS domain protein; str 99.6 2.7E-15 9.2E-20 135.2 14.5 122 263-412 41-164 (172)
55 3kpb_A Uncharacterized protein 99.6 2E-15 6.9E-20 127.5 12.3 116 268-412 5-120 (122)
56 1yav_A Hypothetical protein BS 99.6 9.9E-16 3.4E-20 136.0 10.8 119 360-494 20-141 (159)
57 2d4z_A Chloride channel protei 99.6 5.2E-15 1.8E-19 141.1 16.2 139 355-495 14-246 (250)
58 3lv9_A Putative transporter; C 99.6 3.7E-15 1.3E-19 130.6 14.0 121 264-412 23-145 (148)
59 4fry_A Putative signal-transdu 99.6 1.2E-15 4.1E-20 135.1 10.9 114 362-494 21-134 (157)
60 3k6e_A CBS domain protein; str 99.6 1.7E-15 5.9E-20 134.4 11.5 121 269-412 20-142 (156)
61 3oi8_A Uncharacterized protein 99.6 9.9E-16 3.4E-20 135.8 9.4 114 355-490 39-155 (156)
62 3kxr_A Magnesium transporter, 99.6 2.4E-15 8.3E-20 139.6 12.4 115 356-494 56-173 (205)
63 3gby_A Uncharacterized protein 99.6 2E-15 6.8E-20 129.0 10.2 120 266-412 7-126 (128)
64 2ef7_A Hypothetical protein ST 99.6 6.9E-15 2.4E-19 126.2 13.3 121 266-413 6-126 (133)
65 3i8n_A Uncharacterized protein 99.6 4.8E-15 1.6E-19 127.0 12.2 119 265-410 7-127 (130)
66 1vr9_A CBS domain protein/ACT 99.6 2.3E-15 7.8E-20 140.7 11.0 120 351-494 10-129 (213)
67 1pbj_A Hypothetical protein; s 99.6 6.6E-15 2.2E-19 124.8 11.7 118 268-412 5-122 (125)
68 3jtf_A Magnesium and cobalt ef 99.6 4.6E-15 1.6E-19 127.0 10.6 117 266-411 7-125 (129)
69 2j9l_A Chloride channel protei 99.6 3.5E-15 1.2E-19 135.6 10.4 122 358-494 15-164 (185)
70 3lfr_A Putative metal ION tran 99.6 3.3E-15 1.1E-19 129.1 8.8 119 267-411 6-126 (136)
71 2p9m_A Hypothetical protein MJ 99.6 1.4E-14 4.7E-19 125.1 12.4 121 266-412 10-136 (138)
72 3nqr_A Magnesium and cobalt ef 99.6 3.5E-15 1.2E-19 127.3 8.4 117 267-410 6-124 (127)
73 2o16_A Acetoin utilization pro 99.6 1.7E-14 5.8E-19 128.3 13.2 128 266-412 7-135 (160)
74 3l2b_A Probable manganase-depe 99.6 5.3E-14 1.8E-18 134.2 17.1 210 170-410 7-242 (245)
75 3oco_A Hemolysin-like protein 99.6 8E-15 2.7E-19 129.4 10.3 118 267-412 23-143 (153)
76 2yzi_A Hypothetical protein PH 99.6 2.5E-14 8.7E-19 123.5 13.3 123 265-413 8-130 (138)
77 3oi8_A Uncharacterized protein 99.6 1.6E-14 5.4E-19 128.0 12.1 118 262-407 36-155 (156)
78 3fhm_A Uncharacterized protein 99.6 1.4E-14 4.7E-19 129.5 11.8 117 272-413 35-151 (165)
79 3fv6_A YQZB protein; CBS domai 99.6 2.3E-14 7.7E-19 127.3 13.0 121 266-412 19-144 (159)
80 3hf7_A Uncharacterized CBS-dom 99.6 2.6E-14 8.8E-19 122.5 12.7 125 171-328 3-127 (130)
81 3lqn_A CBS domain protein; csg 99.6 1.7E-14 5.8E-19 126.5 11.7 123 269-413 20-144 (150)
82 2rih_A Conserved protein with 99.6 2.5E-14 8.5E-19 124.2 12.6 119 266-410 7-126 (141)
83 2rc3_A CBS domain; in SITU pro 99.6 2.4E-14 8.1E-19 123.3 12.0 119 268-412 10-131 (135)
84 3k2v_A Putative D-arabinose 5- 99.5 2.8E-14 9.6E-19 125.2 11.8 117 266-408 30-148 (149)
85 4gqw_A CBS domain-containing p 99.5 2.2E-14 7.6E-19 125.7 10.8 129 266-412 7-143 (152)
86 2nyc_A Nuclear protein SNF4; b 99.5 4.3E-14 1.5E-18 122.7 12.4 120 269-412 16-141 (144)
87 1o50_A CBS domain-containing p 99.5 8.2E-14 2.8E-18 123.3 14.4 127 266-412 18-153 (157)
88 1pvm_A Conserved hypothetical 99.5 3.9E-14 1.3E-18 129.0 12.6 123 266-412 11-133 (184)
89 3ocm_A Putative membrane prote 99.5 9.2E-14 3.1E-18 125.3 14.8 123 262-413 34-158 (173)
90 2uv4_A 5'-AMP-activated protei 99.5 7.8E-14 2.7E-18 122.7 13.9 115 272-410 29-149 (152)
91 2yvy_A MGTE, Mg2+ transporter 99.5 7.5E-14 2.6E-18 135.8 14.8 131 252-413 123-258 (278)
92 3ctu_A CBS domain protein; str 99.5 3.1E-14 1.1E-18 125.8 10.9 124 267-413 18-143 (156)
93 2emq_A Hypothetical conserved 99.5 9.3E-14 3.2E-18 122.7 13.5 127 265-413 12-140 (157)
94 2oux_A Magnesium transporter; 99.5 2.2E-14 7.4E-19 140.2 10.2 115 356-494 139-258 (286)
95 1y5h_A Hypothetical protein RV 99.5 1.4E-14 4.9E-19 124.2 7.4 117 268-410 12-129 (133)
96 2yvy_A MGTE, Mg2+ transporter 99.5 4.6E-14 1.6E-18 137.3 11.9 115 356-494 137-256 (278)
97 4fry_A Putative signal-transdu 99.5 4.6E-14 1.6E-18 124.8 10.8 116 272-413 21-136 (157)
98 2d4z_A Chloride channel protei 99.5 1.7E-13 5.8E-18 130.6 14.9 143 265-412 14-246 (250)
99 4aee_A Alpha amylase, catalyti 99.5 1.9E-14 6.4E-19 157.5 8.6 80 23-105 15-102 (696)
100 3sl7_A CBS domain-containing p 99.5 5.5E-14 1.9E-18 127.0 10.1 140 267-412 7-156 (180)
101 2pfi_A Chloride channel protei 99.5 8.4E-14 2.9E-18 123.8 11.1 125 267-412 16-147 (164)
102 2oux_A Magnesium transporter; 99.5 1.6E-13 5.4E-18 134.0 13.5 127 256-413 129-260 (286)
103 1yav_A Hypothetical protein BS 99.5 5.8E-14 2E-18 124.5 9.2 124 268-413 18-143 (159)
104 2j9l_A Chloride channel protei 99.5 2.9E-13 9.9E-18 122.8 13.3 141 268-413 15-166 (185)
105 2zy9_A Mg2+ transporter MGTE; 99.5 3.9E-13 1.3E-17 140.2 15.9 164 218-412 109-277 (473)
106 3pc3_A CG1753, isoform A; CBS, 99.4 2E-13 6.9E-18 144.6 11.2 121 355-494 385-510 (527)
107 2zy9_A Mg2+ transporter MGTE; 99.4 8.6E-13 2.9E-17 137.6 11.5 116 355-494 156-276 (473)
108 3org_A CMCLC; transporter, tra 99.4 2.1E-13 7.1E-18 147.3 5.1 137 355-493 454-623 (632)
109 3usb_A Inosine-5'-monophosphat 99.4 3.3E-12 1.1E-16 134.0 13.2 113 358-493 117-232 (511)
110 3pc3_A CG1753, isoform A; CBS, 99.3 4.9E-12 1.7E-16 134.0 11.2 124 264-413 384-512 (527)
111 3usb_A Inosine-5'-monophosphat 99.3 3.5E-11 1.2E-15 126.2 16.5 117 268-412 117-234 (511)
112 1zfj_A Inosine monophosphate d 99.3 1.6E-11 5.4E-16 129.0 13.1 114 358-494 94-210 (491)
113 4fxs_A Inosine-5'-monophosphat 99.3 1.5E-12 5E-17 136.2 3.1 113 358-493 93-207 (496)
114 1vrd_A Inosine-5'-monophosphat 99.2 9.5E-13 3.2E-17 138.4 0.4 115 357-494 98-214 (494)
115 1me8_A Inosine-5'-monophosphat 99.2 9.2E-13 3.1E-17 138.4 0.2 113 360-494 103-220 (503)
116 4avf_A Inosine-5'-monophosphat 99.2 1.3E-12 4.6E-17 136.4 0.2 112 358-493 92-205 (490)
117 3org_A CMCLC; transporter, tra 99.2 1.9E-11 6.3E-16 132.1 6.6 137 266-409 455-622 (632)
118 1me8_A Inosine-5'-monophosphat 99.1 3.1E-12 1E-16 134.4 -0.7 153 270-472 103-260 (503)
119 1zfj_A Inosine monophosphate d 99.1 4.9E-10 1.7E-14 117.6 15.9 117 268-412 94-211 (491)
120 4af0_A Inosine-5'-monophosphat 99.1 9.2E-12 3.1E-16 127.4 0.3 109 360-492 144-255 (556)
121 4fxs_A Inosine-5'-monophosphat 99.1 6.3E-11 2.1E-15 123.9 4.9 114 267-410 92-207 (496)
122 4aef_A Neopullulanase (alpha-a 99.1 2.5E-10 8.5E-15 123.9 9.7 78 25-105 16-98 (645)
123 4af0_A Inosine-5'-monophosphat 99.1 2.5E-11 8.4E-16 124.3 1.4 113 270-410 144-256 (556)
124 1jcn_A Inosine monophosphate d 99.0 3.3E-12 1.1E-16 134.8 -6.3 116 357-493 111-231 (514)
125 4avf_A Inosine-5'-monophosphat 99.0 1.2E-10 4.2E-15 121.5 4.5 114 267-411 91-206 (490)
126 2cu0_A Inosine-5'-monophosphat 99.0 4.9E-11 1.7E-15 124.9 0.3 108 360-493 99-206 (486)
127 1vrd_A Inosine-5'-monophosphat 99.0 7.3E-11 2.5E-15 124.0 0.2 115 268-412 99-215 (494)
128 3ghd_A A cystathionine beta-sy 98.8 1E-08 3.5E-13 77.3 6.7 62 364-429 2-63 (70)
129 1jcn_A Inosine monophosphate d 98.8 2.6E-10 8.8E-15 120.3 -3.6 117 267-410 111-231 (514)
130 2cu0_A Inosine-5'-monophosphat 98.8 9.5E-10 3.3E-14 115.1 0.2 110 269-411 98-207 (486)
131 3ghd_A A cystathionine beta-sy 98.7 2.1E-08 7.2E-13 75.6 7.1 48 274-328 2-49 (70)
132 3fio_A A cystathionine beta-sy 98.5 3.2E-07 1.1E-11 68.6 6.6 62 364-429 2-63 (70)
133 3fio_A A cystathionine beta-sy 98.4 7.2E-07 2.5E-11 66.6 7.4 47 446-494 2-48 (70)
134 2z0b_A GDE5, KIAA1434, putativ 98.3 1.1E-06 3.9E-11 74.5 7.7 57 25-81 8-75 (131)
135 1ac0_A Glucoamylase; hydrolase 97.8 1.2E-05 4.1E-10 65.9 3.9 58 25-82 6-74 (108)
136 3c8d_A Enterochelin esterase; 97.6 0.00018 6.3E-09 73.1 9.3 86 25-112 30-154 (403)
137 1m7x_A 1,4-alpha-glucan branch 97.6 0.00018 6E-09 77.4 9.6 67 27-95 26-100 (617)
138 3k1d_A 1,4-alpha-glucan-branch 97.5 0.00014 4.6E-09 79.0 8.4 66 27-94 137-210 (722)
139 3aml_A OS06G0726400 protein; s 97.5 0.00014 4.7E-09 79.6 8.4 64 27-93 66-143 (755)
140 2laa_A Beta/alpha-amylase; SBD 96.4 0.0071 2.4E-07 48.4 6.6 63 27-91 6-75 (104)
141 3vgf_A Malto-oligosyltrehalose 96.3 0.0022 7.6E-08 67.9 4.4 62 27-94 10-74 (558)
142 1bf2_A Isoamylase; hydrolase, 96.3 0.0024 8.2E-08 70.0 4.4 55 28-85 18-85 (750)
143 2wsk_A Glycogen debranching en 96.1 0.0069 2.4E-07 65.4 6.7 54 27-84 20-77 (657)
144 2bhu_A Maltooligosyltrehalose 96.1 0.0054 1.8E-07 65.5 5.6 62 27-95 35-97 (602)
145 2vr5_A Glycogen operon protein 95.9 0.0083 2.8E-07 65.4 6.3 55 27-85 30-91 (718)
146 1wzl_A Alpha-amylase II; pullu 95.9 0.0085 2.9E-07 63.8 6.2 60 23-82 20-87 (585)
147 2e8y_A AMYX protein, pullulana 95.3 0.019 6.6E-07 62.6 6.5 65 27-94 114-185 (718)
148 1j0h_A Neopullulanase; beta-al 95.3 0.011 3.8E-07 62.9 4.4 60 23-82 20-89 (588)
149 1qho_A Alpha-amylase; glycosid 95.2 0.036 1.2E-06 60.1 8.3 57 23-81 579-653 (686)
150 2fhf_A Pullulanase; multiple d 94.9 0.024 8.4E-07 64.1 6.0 67 27-95 305-385 (1083)
151 2vn4_A Glucoamylase; hydrolase 94.8 0.079 2.7E-06 56.2 9.3 58 24-81 495-563 (599)
152 3bmv_A Cyclomaltodextrin gluca 94.5 0.064 2.2E-06 58.1 7.8 58 24-81 582-651 (683)
153 4aio_A Limit dextrinase; hydro 94.5 0.024 8.4E-07 63.2 4.6 53 28-83 138-194 (884)
154 1cyg_A Cyclodextrin glucanotra 94.4 0.072 2.5E-06 57.6 7.9 59 23-81 577-647 (680)
155 1vem_A Beta-amylase; beta-alph 94.3 0.067 2.3E-06 55.7 7.1 57 24-81 418-485 (516)
156 1d3c_A Cyclodextrin glycosyltr 94.2 0.083 2.8E-06 57.2 8.0 58 24-81 585-654 (686)
157 3faw_A Reticulocyte binding pr 94.2 0.024 8.2E-07 62.8 3.6 65 28-94 146-224 (877)
158 2ya0_A Putative alkaline amylo 93.7 0.079 2.7E-06 57.7 6.5 65 28-94 26-106 (714)
159 2wan_A Pullulanase; hydrolase, 93.6 0.062 2.1E-06 60.1 5.6 63 27-93 326-398 (921)
160 3m07_A Putative alpha amylase; 93.5 0.083 2.8E-06 56.4 6.1 63 27-96 43-108 (618)
161 1ea9_C Cyclomaltodextrinase; h 92.7 0.024 8.3E-07 60.2 0.6 60 23-82 20-86 (583)
162 1ji1_A Alpha-amylase I; beta/a 91.5 0.15 5.1E-06 54.7 5.0 56 27-83 31-96 (637)
163 2ya1_A Putative alkaline amylo 91.3 0.18 6.1E-06 56.9 5.5 64 28-93 333-412 (1014)
164 1gcy_A Glucan 1,4-alpha-maltot 89.7 0.063 2.2E-06 56.2 0.0 57 24-81 429-495 (527)
165 2wan_A Pullulanase; hydrolase, 88.9 0.55 1.9E-05 52.5 6.8 59 25-85 152-220 (921)
166 4fch_A Outer membrane protein 87.9 0.46 1.6E-05 43.5 4.5 51 36-87 12-64 (221)
167 2c3v_A Alpha-amylase G-6; carb 85.5 1.6 5.6E-05 34.5 5.9 61 27-89 11-78 (102)
168 4fe9_A Outer membrane protein 62.0 8.2 0.00028 39.3 5.3 47 36-83 150-198 (470)
169 4dny_A Metalloprotease STCE; m 55.1 14 0.00048 30.1 4.4 23 67-90 99-122 (126)
170 2jnz_A PHL P 3 allergen; timot 51.1 31 0.0011 27.4 5.8 60 23-88 25-90 (108)
171 4fe9_A Outer membrane protein 47.4 14 0.00048 37.6 4.2 53 36-89 260-319 (470)
172 2djm_A Glucoamylase A; beta sa 47.3 42 0.0014 26.5 6.0 49 36-84 33-91 (106)
173 2eef_A Protein phosphatase 1, 46.9 21 0.00072 30.4 4.5 49 36-84 60-122 (156)
174 4fem_A Outer membrane protein 46.5 12 0.00042 36.5 3.4 51 36-87 149-201 (358)
175 1tif_A IF3-N, translation init 45.5 35 0.0012 25.3 4.9 29 385-413 13-41 (78)
176 1mhx_A Immunoglobulin-binding 37.3 14 0.00047 25.2 1.4 13 81-93 48-60 (65)
177 4fch_A Outer membrane protein 35.4 14 0.00048 33.4 1.7 49 37-85 117-169 (221)
178 4a02_A EFCBM33A, CBM33, chitin 33.6 1.9E+02 0.0066 24.6 8.5 71 27-107 75-163 (166)
179 1svj_A Potassium-transporting 31.7 21 0.00073 30.3 2.2 35 455-491 121-155 (156)
180 2fqm_A Phosphoprotein, P prote 31.2 24 0.00082 25.2 1.9 27 43-73 1-27 (75)
181 4aef_A Neopullulanase (alpha-a 31.1 50 0.0017 34.9 5.4 52 24-81 123-178 (645)
182 1igd_A Protein G; immunoglobul 30.3 21 0.00073 24.5 1.5 13 81-93 44-56 (61)
183 3fil_A Immunoglobulin G-bindin 29.8 14 0.00049 24.7 0.5 13 81-93 39-51 (56)
184 3ft1_A PHL P 3 allergen; beta- 25.3 1.6E+02 0.0054 22.8 6.0 59 24-88 15-79 (100)
185 2bem_A CBP21; chitin-binding p 24.8 3.3E+02 0.011 23.3 8.8 72 27-108 76-167 (170)
186 4aee_A Alpha amylase, catalyti 24.3 53 0.0018 35.1 4.1 57 24-83 132-188 (696)
187 1xbr_A Protein (T protein); co 24.1 60 0.0021 28.3 3.7 29 61-90 45-74 (184)
188 4gln_D D-RFX001; heterochiral 23.5 32 0.0011 23.1 1.3 16 78-93 35-51 (56)
189 2rpv_A Immunoglobulin G-bindin 23.4 32 0.0011 24.4 1.4 13 81-93 58-70 (75)
190 1tif_A IF3-N, translation init 22.3 1.1E+02 0.0039 22.5 4.3 25 467-492 13-37 (78)
191 1ew4_A CYAY protein; friedreic 20.9 66 0.0022 25.3 3.0 18 73-91 67-84 (106)
192 2vzp_A Aocbm35, EXO-beta-D-glu 20.6 56 0.0019 26.2 2.7 17 66-82 98-114 (127)
No 1
>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C
Probab=100.00 E-value=2.4e-39 Score=323.51 Aligned_cols=309 Identities=25% Similarity=0.437 Sum_probs=247.0
Q ss_pred ChhHHHHHHHHHHHHhhhccccccCCCCcceEEecCCCCHHHHHHHHHHcCCcEeeeeeCCCCeEEEEeehHHHHHHHHH
Q 011043 152 SEADLQVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRE 231 (495)
Q Consensus 152 ~~~~~~~~~~~i~~~l~~~~~~d~~p~s~~vi~l~~~~~v~~A~~~l~e~~i~~~Pv~d~~~~~~vGilt~~Dii~~l~~ 231 (495)
.+.+.....+++.+||+.++|||++|.+.++++++.+.|+++|++.|.+++++++||||++.++++|++|..|++.++..
T Consensus 12 ~~~~~~~~~~~i~~~l~~~~~~d~m~~~~~~v~v~~~~sv~~a~~~m~~~~~~~~pV~d~~~~~lvGilt~~Dl~~~l~~ 91 (323)
T 3t4n_C 12 VSIEQQLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTDFINVIQY 91 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHTTCSCEEEEETTTTEEEEEECHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhCchHhhCCCCCcEEEEcCCCcHHHHHHHHHHcCCceEEEEeCCCCeEEEEEEHHHHHHHHHH
Confidence 34555667899999999999999999999999999999999999999999999999999887899999999999998876
Q ss_pred HhcCCCCCChhhHhhhhHHHHHHHHhhhccccCCCCcccCCCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCC
Q 011043 232 LGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFP 311 (495)
Q Consensus 232 ~~~~~~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~ 311 (495)
++..+.. .+.++.+....+++.... ..+|.++++++.+++++.+|++.|.+++++++||++.+...+ .+
T Consensus 92 ~~~~~~~--~~~l~~~~~~~v~~i~~~--------~~~~~~~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~-~~ 160 (323)
T 3t4n_C 92 YFSNPDK--FELVDKLQLDGLKDIERA--------LGVDQLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETH-RE 160 (323)
T ss_dssp HHHCGGG--GGGGGGCBHHHHHHHHHH--------TTC----CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTTC-CE
T ss_pred HHcCcch--hHHHHHHHHHHHHHHHHH--------hCCCCCCceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCCC-cc
Confidence 6543322 235555556666665443 235788999999999999999999999999999996432222 11
Q ss_pred eEEEEEehhhHHHHHHhhhccCCCCCcccccccccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEE
Q 011043 312 QLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIV 391 (495)
Q Consensus 312 ~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVv 391 (495)
+++|++|.+|+++++..+... ......+++++.++ |.++++++.+++++.+|++.|.+++++++||+
T Consensus 161 ~l~Givt~~di~~~l~~~~~~----~~~~~~~v~~~~~~---------m~~~~~~v~~~~~~~~~~~~m~~~~~~~~pVv 227 (323)
T 3t4n_C 161 IVVSVLTQYRILKFVALNCRE----THFLKIPIGDLNII---------TQDNMKSCQMTTPVIDVIQMLTQGRVSSVPII 227 (323)
T ss_dssp EEEEEEEHHHHHHHHHHHCGG----GGGCCSBGGGTTCS---------BCTTCCCBCTTSBHHHHHHHHHHHTCSEEEEE
T ss_pred ceEEEecHHHHHHHHHhcCCc----hhhhhCcHHHcCCC---------CCCCcEEECCCCcHHHHHHHHHHcCCCEEEEE
Confidence 299999999999998765432 12334455554221 66789999999999999999999999999999
Q ss_pred cCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCCCCccccCCcceEecCCCCHHHHHHHHHcCCCcEEE
Q 011043 392 DDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLV 471 (495)
Q Consensus 392 d~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~ 471 (495)
|++|+++|+||.+|+++++..+.+..+ +.++.++|..... ...++++|.+++++.+|+++|.+++++++|
T Consensus 228 d~~~~~~Giit~~dl~~~~~~~~~~~~---~~~v~~~m~~~~~-------~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~ 297 (323)
T 3t4n_C 228 DENGYLINVYEAYDVLGLIKGGIYNDL---SLSVGEALMRRSD-------DFEGVYTCTKNDKLSTIMDNIRKARVHRFF 297 (323)
T ss_dssp CTTCBEEEEEETTHHHHHHHTTHHHHT---TSBHHHHGGGSCT-------TCCCCEEECTTCBHHHHHHHHHHSCCCEEE
T ss_pred CCCCeEEEEEeHHHHHHHHhhchhhhc---cCCHHHHHhhccc-------cCCCCEEECCCCCHHHHHHHHHHhCCCEEE
Confidence 999999999999999997765433222 4678887743110 012689999999999999999999999999
Q ss_pred EEeCCCCeEEEEEehHHHHHHhhC
Q 011043 472 IVEAGSKRVEGIVSLSDIFKFLLG 495 (495)
Q Consensus 472 VVd~~~~~lvGiIs~~DIl~~l~~ 495 (495)
|||+ +|+++|+||.+||++++++
T Consensus 298 Vvd~-~~~l~Giit~~Dil~~l~~ 320 (323)
T 3t4n_C 298 VVDD-VGRLVGVLTLSDILKYILL 320 (323)
T ss_dssp EECT-TSBEEEEEEHHHHHHHHHH
T ss_pred EECC-CCcEEEEEEHHHHHHHHHh
Confidence 9994 7999999999999999863
No 2
>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*
Probab=100.00 E-value=6.8e-34 Score=285.24 Aligned_cols=305 Identities=22% Similarity=0.435 Sum_probs=239.6
Q ss_pred hHHHHHHHHHHHHhhhccccccCCCCcceEEecCCCCHHHHHHHHHHcCCcEeeeeeCCCCeEEEEeehHHHHHHHHHHh
Q 011043 154 ADLQVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELG 233 (495)
Q Consensus 154 ~~~~~~~~~i~~~l~~~~~~d~~p~s~~vi~l~~~~~v~~A~~~l~e~~i~~~Pv~d~~~~~~vGilt~~Dii~~l~~~~ 233 (495)
.+.+...+.+.+||+..+++|+|+.+.++++++.+.|+.+|++.|.+++++++||+|.+.++++|++|..|++.++...+
T Consensus 6 ~~~~~~~~~~~~~l~~~~v~dim~~~~~vv~v~~~~tv~~a~~~~~~~~~~~~pV~d~~~~~~vGiv~~~Dl~~~~~~~~ 85 (334)
T 2qrd_G 6 ETQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYY 85 (334)
T ss_dssp HHHHHHHHHHHHHHHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCchhhhCCCCCCEEEEcCCCCHHHHHHHHHHcCCeEEEEEeCCCCeEEEEEEHHHHHHHHHHHh
Confidence 44556788999999999999999999999999999999999999999999999999987789999999999998876543
Q ss_pred cCCCCC-ChhhHhhhhHHHHHHHHhhhccccCCCCcccCCCc--eeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCC-C
Q 011043 234 NHGSNL-TEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPL--VYAGPNDNLKDVARKILHNEVATVPIIHSSSQDG-S 309 (495)
Q Consensus 234 ~~~~~l-~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~--i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g-~ 309 (495)
...... ..+.+...++..+++.... +|.+++ +++.+++++.+|++.|.+++++++||++. ..+ .
T Consensus 86 ~~~~~~~~~~~~~~~~~~~i~~~l~~----------im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~--~~~~~ 153 (334)
T 2qrd_G 86 QSSSFPEAIAEIDKFRLLGLREVERK----------IGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDV--DGETG 153 (334)
T ss_dssp HHCSCGGGGGGGGSCBHHHHHHHHHH----------HTCSCSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEE--ETTTT
T ss_pred hccCCccHHHHHhhhchhhHHHHHHh----------hccCCCceeeeCCCCcHHHHHHHHHHCCceEEEEEeC--CCCcC
Confidence 211000 1123445566666655432 466666 99999999999999999999999999952 222 0
Q ss_pred CCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEE
Q 011043 310 FPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIP 389 (495)
Q Consensus 310 ~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lp 389 (495)
...++|++|..||++++...... ......+++++ ..+|.+++.++.+++++.+|++.|.+++++++|
T Consensus 154 ~~~~~Givt~~dl~~~~~~~~~~----~~~~~~~v~~l---------~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~~ 220 (334)
T 2qrd_G 154 SEMIVSVLTQYRILKFISMNCKE----TAMLRVPLNQM---------TIGTWSNLATASMETKVYDVIKMLAEKNISAVP 220 (334)
T ss_dssp EEEEEEEEEHHHHHHHHHHHCGG----GGGCCCBGGGS---------SCSBCSSCCCBCTTSBHHHHHHHHHHHTCSEEE
T ss_pred ccceEEEeeHHHHHHHHHhhccc----hhhhhCcHHHh---------CCcccCCceEECCCCcHHHHHHHHHHcCCcEEE
Confidence 00299999999999988654221 01123344432 113778899999999999999999999999999
Q ss_pred EEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCCCCccccCCcceEecCCCCHHHHHHHHHcCCCcE
Q 011043 390 IVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRR 469 (495)
Q Consensus 390 Vvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~ 469 (495)
|+|++|+++|+||.+|+++....+.+.. .+.++.++|.... .+ .+++.+|.+++++.+|+++|.++++++
T Consensus 221 Vvd~~~~~~Giit~~dl~~~~~~~~~~~---~~~~v~~~m~~~~-----~~--~~~~~~v~~~~~l~~~~~~m~~~~~~~ 290 (334)
T 2qrd_G 221 IVNSEGTLLNVYESVDVMHLIQDGDYSN---LDLSVGEALLKRP-----AN--FDGVHTCRATDRLDGIFDAIKHSRVHR 290 (334)
T ss_dssp EECTTCBEEEEEETHHHHHHHTTSCGGG---GGSBHHHHHTTCC-----TT--CCCCCEECTTCBHHHHHHHHHHSCCCE
T ss_pred EEcCCCcEEEEEEHHHHHHHhhcccccc---ccCcHHHHHhccc-----cc--CCCCEEECCCCcHHHHHHHHHHcCCCE
Confidence 9998899999999999998765543211 2467888773210 00 037899999999999999999999999
Q ss_pred EEEEeCCCCeEEEEEehHHHHHHhh
Q 011043 470 LVIVEAGSKRVEGIVSLSDIFKFLL 494 (495)
Q Consensus 470 l~VVd~~~~~lvGiIs~~DIl~~l~ 494 (495)
+||||+ +|+++|+||..||++++.
T Consensus 291 l~Vvd~-~g~l~Giit~~dil~~~~ 314 (334)
T 2qrd_G 291 LFVVDE-NLKLEGILSLADILNYII 314 (334)
T ss_dssp EEEECT-TCBEEEEEEHHHHHHHHH
T ss_pred EEEECC-CCeEEEEEeHHHHHHHHH
Confidence 999994 799999999999999885
No 3
>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*
Probab=100.00 E-value=2.5e-34 Score=288.02 Aligned_cols=298 Identities=33% Similarity=0.566 Sum_probs=241.3
Q ss_pred HHHHHHHHhhhccccccCCCCcceEEecCCCCHHHHHHHHHHcCCcEeeeeeCCCCeEEEEeehHHHHHHHHHHhcCCCC
Q 011043 159 SRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSN 238 (495)
Q Consensus 159 ~~~~i~~~l~~~~~~d~~p~s~~vi~l~~~~~v~~A~~~l~e~~i~~~Pv~d~~~~~~vGilt~~Dii~~l~~~~~~~~~ 238 (495)
.++.+..||+..+++|+|+.+.++++++.+.|+.+|++.|.+++++++||+|.+.++++|++|..|++.++......+.
T Consensus 24 ~~~~~~~~l~~~~v~dim~p~~~v~~v~~~~~v~~a~~~~~~~~~~~~pV~d~~~~~~vGivt~~Dll~~l~~~~~~~~- 102 (330)
T 2v8q_E 24 NSSVYTTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSAL- 102 (330)
T ss_dssp CSCHHHHHHHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHT-
T ss_pred hhHHHHHHHHcCcHhhhccCCCcEEEEeCCCcHHHHHHHHHHcCCcEEEEEeCCCCeEEEEEEHHHHHHHHHHHHhccc-
Confidence 4678999999999999999999999999999999999999999999999999876899999999999987755331111
Q ss_pred CChhhHhhhhHHHHHHHHhhhccccCCCCcccCCCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEe
Q 011043 239 LTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIAS 318 (495)
Q Consensus 239 l~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils 318 (495)
.....+....++.|.... +++|.++++++.+++++.+|+++|.+++++++||++ +++| +++|++|
T Consensus 103 ~~~~~l~~~~~~~~~~~~----------~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd--~~~~---~~~Givt 167 (330)
T 2v8q_E 103 VQIYELEEHKIETWREVY----------LQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVID--PESG---NTLYILT 167 (330)
T ss_dssp TTCCCGGGCBHHHHHHHH----------SSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEEC--TTTC---CEEEEEC
T ss_pred cchhHHhhccHHHHHHHH----------hhcccCCceEeCCCCCHHHHHHHHHHCCCCeEEEEe--CCCC---cEEEEEc
Confidence 111234455566665433 347899999999999999999999999999999993 2157 8999999
Q ss_pred hhhHHHHHHhhhccCCCCCcccccccccccCcccccccCCCCC-CCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcE
Q 011043 319 LSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNR-RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSL 397 (495)
Q Consensus 319 ~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~~~m~-~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~l 397 (495)
..|+++++........ ...++..+++++.+ |. +++.++.+++++.++++.|.+++++++||+|++|++
T Consensus 168 ~~dl~~~~~~~~~~~~-~~~~~~~~v~~~~v----------~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~l 236 (330)
T 2v8q_E 168 HKRILKFLKLFITEFP-KPEFMSKSLEELQI----------GTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRV 236 (330)
T ss_dssp HHHHHHHHHHHSCSSS-CCGGGGSBHHHHTC----------SBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBE
T ss_pred HHHHHHHHHHHhhccC-chhhhcCCHHHhcc----------cCcCCceEECCCCCHHHHHHHHHHcCCCeEEEECCCCcE
Confidence 9999998876533211 11233455555533 33 578899999999999999999999999999989999
Q ss_pred EEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCCCCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCC
Q 011043 398 LDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGS 477 (495)
Q Consensus 398 vGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~ 477 (495)
+|+||.+|+++......+.. .+.++.+++..+. .|.+++++|.+++++.+|+++|.+++++++||+|+ +
T Consensus 237 ~Giit~~dl~~~~~~~~~~~---~~~~v~~~~~~~~-------~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~-~ 305 (330)
T 2v8q_E 237 VDIYSKFDVINLAAEKTYNN---LDVSVTKALQHRS-------HYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDE-H 305 (330)
T ss_dssp EEEEEGGGTGGGGGSSCCCC---CSSBHHHHGGGCC-------SCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECT-T
T ss_pred EEEEEHHHHHHHHhcccccc---ccCcHHHHHhccc-------cccCCCeEECCCCcHHHHHHHHHHCCCcEEEEEcC-C
Confidence 99999999998665433222 2467888774322 34678999999999999999999999999999994 7
Q ss_pred CeEEEEEehHHHHHHhh
Q 011043 478 KRVEGIVSLSDIFKFLL 494 (495)
Q Consensus 478 ~~lvGiIs~~DIl~~l~ 494 (495)
|+++|+||..||++++.
T Consensus 306 g~l~Giit~~Dil~~~~ 322 (330)
T 2v8q_E 306 DVVKGIVSLSDILQALV 322 (330)
T ss_dssp SBEEEEEEHHHHHHHHH
T ss_pred CcEEEEEeHHHHHHHHH
Confidence 99999999999999875
No 4
>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*
Probab=100.00 E-value=8.5e-32 Score=262.57 Aligned_cols=269 Identities=14% Similarity=0.296 Sum_probs=209.2
Q ss_pred cccccCCCCcceEEecCCCCHHHHHHHHHHcCCcEeeeeeCCCCeEEEEeehHHHHHHHHHHhcCCCCCChhhHhhhhHH
Q 011043 171 TAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTIS 250 (495)
Q Consensus 171 ~~~d~~p~s~~vi~l~~~~~v~~A~~~l~e~~i~~~Pv~d~~~~~~vGilt~~Dii~~l~~~~~~~~~l~~~~l~~~~i~ 250 (495)
++.+.+... ++++++++.|+.+|++.|.+++++++||+|++.++++|++|..||+.++...+. ...+......
T Consensus 4 ~v~~~i~~~-~~~~v~~~~sl~~a~~~m~~~~~~~lpV~d~~~~~~~Givt~~di~~~~~~~~~------~~~~~~~~~~ 76 (280)
T 3kh5_A 4 RVMKIAQNK-KIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSK------YNLIREKHER 76 (280)
T ss_dssp BGGGTSCCS-CCCCBCTTSBHHHHHHHHHHHCCCEEEEECTTTCBEEEEEEHHHHHHHTTTSGG------GHHHHTTSTT
T ss_pred hHHHHhcCC-CcEEECCCCcHHHHHHHHHhCCCcEeeEEECCCCeEEEEEEHHHHHHHhcccch------hhhhhhcccc
Confidence 344555443 899999999999999999999999999999767899999999999987622110 0001100000
Q ss_pred HHHHHHhhhccccCCCCcccCCCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhh
Q 011043 251 AWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYF 330 (495)
Q Consensus 251 ~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~ 330 (495)
.+... ....++++|.++++++.+++++.+|++.|.+++++++||+ ++++ +++|++|..|+++++....
T Consensus 77 ~~~~~------~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vv---d~~~---~~~Givt~~dl~~~~~~~~ 144 (280)
T 3kh5_A 77 NFLAA------INEPVREIMEENVITLKENADIDEAIETFLTKNVGGAPIV---NDEN---QLISLITERDVIRALLDKI 144 (280)
T ss_dssp CHHHH------TTSBGGGTSBCSCCCEETTCBHHHHHHHHHHTTCSEEEEE---CTTC---BEEEEEEHHHHHHHHGGGS
T ss_pred chhHH------hhhhHHHhcCCCCEEECCCCCHHHHHHHHHhCCCCEEEEE---cCCC---EEEEEEEHHHHHHHHhhcC
Confidence 00000 0124466899999999999999999999999999999999 3567 8999999999998876542
Q ss_pred ccCCCCCcccccccccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 011043 331 RHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA 410 (495)
Q Consensus 331 ~~~~~~~~~l~~~v~~l~i~~~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~ 410 (495)
.. ..+++++ |.+++.++.+++++.++++.|.+++++++||+ ++|+++|++|.+|+++..
T Consensus 145 ~~--------~~~v~~~------------m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv-~~~~~~Givt~~dl~~~~ 203 (280)
T 3kh5_A 145 DE--------NEVIDDY------------ITRDVIVATPGERLKDVARTMVRNGFRRLPVV-SEGRLVGIITSTDFIKLL 203 (280)
T ss_dssp CT--------TCBSGGG------------CBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEE-ETTEEEEEEEHHHHHHHH
T ss_pred CC--------CCCHHHH------------hCCCCeEECCCCcHHHHHHHHHHcCCCEEEEE-ECCEEEEEEEHHHHHHHH
Confidence 21 1234444 88889999999999999999999999999999 689999999999999876
Q ss_pred hhccc-ccC------cccccCHHHHHHcCCCCCCCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEE
Q 011043 411 KDKAY-AHI------NLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGI 483 (495)
Q Consensus 411 ~~~~~-~~l------~~~~~~v~~~l~~~~~~~~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGi 483 (495)
..+.. ..+ ...+.++.+ +|.+++.+|.+++++.+|++.|.+++++++||+|+ +|+++|+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~v~~-------------~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~-~g~~~Gi 269 (280)
T 3kh5_A 204 GSDWAFNHMQTGNVREITNVRMEE-------------IMKRDVITAKEGDKLKKIAEIMVTNDIGALPVVDE-NLRIKGI 269 (280)
T ss_dssp TSHHHHHHHHSCCTHHHHHCBHHH-------------HSBSSCCCBCTTCBHHHHHHHHHHHTCCEEEEECT-TCBEEEE
T ss_pred hhhhhhhhhcccchhhhhCCcHHH-------------HhcCCCEEECCCCCHHHHHHHHHHCCCCEEEEECC-CCeEEEE
Confidence 43211 000 001244555 45778999999999999999999999999999994 6899999
Q ss_pred EehHHHHHHh
Q 011043 484 VSLSDIFKFL 493 (495)
Q Consensus 484 Is~~DIl~~l 493 (495)
||++||++++
T Consensus 270 vt~~dil~~l 279 (280)
T 3kh5_A 270 ITEKDVLKYF 279 (280)
T ss_dssp EEHHHHGGGG
T ss_pred EeHHHHHHhh
Confidence 9999999886
No 5
>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1
Probab=99.97 E-value=8.9e-31 Score=258.01 Aligned_cols=262 Identities=11% Similarity=0.152 Sum_probs=209.5
Q ss_pred ccccccCCCCcceEEecCCCCHHHHHHHHHHcCCcEeeeeeCCCCeEEEEeehHHHHHHHHHHhcCCCCCChhhHhhhhH
Q 011043 170 HTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTI 249 (495)
Q Consensus 170 ~~~~d~~p~s~~vi~l~~~~~v~~A~~~l~e~~i~~~Pv~d~~~~~~vGilt~~Dii~~l~~~~~~~~~l~~~~l~~~~i 249 (495)
.++.|++.. ++++++++.|+.+|++.|.+++++++||+| ++++|++|..||+..+..... . ....
T Consensus 20 ~~V~dim~~--~~~~v~~~~~v~~a~~~m~~~~~~~~~V~d---~~l~GivT~~Di~~~~~~~~~--~--------~~~~ 84 (296)
T 3ddj_A 20 MNIETLMIK--NPPILSKEDRLGSAFKKINEGGIGRIIVAN---EKIEGLLTTRDLLSTVESYCK--D--------SCSQ 84 (296)
T ss_dssp SSGGGTCEE--SCCEECTTSBHHHHHHHTTGGGCCEEEEES---SSEEEEEEHHHHHGGGTTCC-------------CCH
T ss_pred cCHHHhccC--CCcEECCCccHHHHHHHHHHCCCceEEEEC---CeEEEEEeHHHHHHHhccccc--c--------cccc
Confidence 456777743 899999999999999999999999999998 789999999999987632110 0 0011
Q ss_pred HHHHHHHhhhccccCCCCcccCCCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhh
Q 011043 250 SAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRY 329 (495)
Q Consensus 250 ~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~ 329 (495)
..+... ....++++|.++++++.+++++.+|+++|.+++++++||+ ++++ +++|++|..|+++++...
T Consensus 85 ~~~~~~------~~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVv---d~~~---~lvGivt~~dl~~~~~~~ 152 (296)
T 3ddj_A 85 GDLYHI------STTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVV---DIND---KPVGIVTEREFLLLYKDL 152 (296)
T ss_dssp HHHHHH------HTSBGGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEE---CTTS---CEEEEEEHHHHGGGGGGS
T ss_pred hhhHHH------hcccHHHhccCCCEEEcCCCCHHHHHHHHHHcCCCEEEEE---cCCC---cEEEEEeHHHHHHhhhcc
Confidence 111111 1234567898999999999999999999999999999999 3556 899999999998765432
Q ss_pred hccCCCCCcccccccccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 011043 330 FRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL 409 (495)
Q Consensus 330 ~~~~~~~~~~l~~~v~~l~i~~~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~ 409 (495)
. ...+++++ |.+++.++.+++++.+|++.|.+++++++||+|++|+++|++|.+|+++.
T Consensus 153 ~---------~~~~v~~~------------m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~ 211 (296)
T 3ddj_A 153 D---------EIFPVKVF------------MSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQ 211 (296)
T ss_dssp C---------CCCBHHHH------------SBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHH
T ss_pred c---------ccccHHHh------------hcCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHH
Confidence 1 12344444 88889999999999999999999999999999999999999999999987
Q ss_pred HhhcccccC---cccccCHHHHHHcCCCCCCCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEeh
Q 011043 410 AKDKAYAHI---NLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSL 486 (495)
Q Consensus 410 ~~~~~~~~l---~~~~~~v~~~l~~~~~~~~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~ 486 (495)
.... +..+ .....++.++ |.+++.+|.++++|.+|+++|.+++++++||+|+ +|+++|+||+
T Consensus 212 ~~~~-~~~~~~~~~~~~~v~~~-------------m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~-~g~~~Giit~ 276 (296)
T 3ddj_A 212 LAKA-VDKLDPDYFYGKVVKDV-------------MVTNLVTIDELASVNRAAAEMIVKRIGSLLILNK-DNTIRGIITE 276 (296)
T ss_dssp HHHH-HHHTCTHHHHTCBHHHH-------------SBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEH
T ss_pred HHHH-HhhcChhhhcCcCHHHH-------------hCCCCeEECCCCcHHHHHHHHHHcCCCEEEEECC-CCeEEEEEcH
Confidence 6532 1111 0123456654 4778999999999999999999999999999994 7999999999
Q ss_pred HHHHHHhh
Q 011043 487 SDIFKFLL 494 (495)
Q Consensus 487 ~DIl~~l~ 494 (495)
.||++++.
T Consensus 277 ~Dil~~l~ 284 (296)
T 3ddj_A 277 RDLLIALH 284 (296)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999875
No 6
>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1
Probab=99.96 E-value=1.1e-28 Score=240.97 Aligned_cols=256 Identities=17% Similarity=0.276 Sum_probs=178.8
Q ss_pred cceEEecCCCCHHHHHHHHHHcCCcEeeeeeCCCCeEEEEeehHHHHHHHHHHhcCCCCCChhhHhhhhHHHHHHHHhhh
Q 011043 180 GKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYL 259 (495)
Q Consensus 180 ~~vi~l~~~~~v~~A~~~l~e~~i~~~Pv~d~~~~~~vGilt~~Dii~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~ 259 (495)
.++++++++.|+.+|++.|.+++++++||+|. .++++|++|..|++..+.. .
T Consensus 9 ~~~~~v~~~~~~~~a~~~~~~~~~~~~pV~d~-~~~~~Giv~~~dl~~~~~~---------------~------------ 60 (282)
T 2yzq_A 9 QNPVTITLPATRNYALELFKKYKVRSFPVVNK-EGKLVGIISVKRILVNPDE---------------E------------ 60 (282)
T ss_dssp ESCCCEESSCC------------CCEEEEECT-TCCEEEEEESSCC----------------------------------
T ss_pred CCCeEECCCCcHHHHHHHHHHcCCCeEEEEcC-CCcEEEEEEHHHHHhhhcc---------------C------------
Confidence 47889999999999999999999999999996 5799999999998754310 0
Q ss_pred ccccCCCCcccCCCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHH-HHHhhhccCCCCCc
Q 011043 260 NRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK-CVCRYFRHCSSSLP 338 (495)
Q Consensus 260 ~~~~~~~g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~-~l~~~~~~~~~~~~ 338 (495)
.++++|.++++++.+++++.+|++.|.+++++.+||+ ++++ +++|++|..|+++ ++... . .
T Consensus 61 -----~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vv---d~~~---~~~Giit~~di~~~~~~~~--~-----~ 122 (282)
T 2yzq_A 61 -----QLAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVV---DSKG---KPVGILTVGDIIRRYFAKS--E-----K 122 (282)
T ss_dssp --------CCCBSCCCEEETTSBHHHHHHHHHHHTCSEEEEE---CTTS---CEEEEEEHHHHHHHTTTTC--S-----G
T ss_pred -----CHHHHcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEE---cCCC---EEEEEEEHHHHHHHHHhcc--C-----C
Confidence 1133677788999999999999999999999999999 3456 8999999999987 55421 0 0
Q ss_pred ccccccccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHH------HHHhh
Q 011043 339 ILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT------ALAKD 412 (495)
Q Consensus 339 ~l~~~v~~l~i~~~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~------~~~~~ 412 (495)
....+ ++++|.++++++.+++++.++++.|.+++++++||+|++|+++|++|.+|++ +....
T Consensus 123 ~~~~~------------v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~~Giit~~dl~~~~~~~~~~~~ 190 (282)
T 2yzq_A 123 YKGVE------------IEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKS 190 (282)
T ss_dssp GGGCB------------STTTSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGGGCGGGCC----
T ss_pred cccCc------------HHHHhCCCCEEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHhhhhhhhhhhcc
Confidence 11222 3344888899999999999999999999999999999889999999999998 32210
Q ss_pred cc--ccc-Ccccc-cCHHHHHH---cCCCCCCCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEe
Q 011043 413 KA--YAH-INLSE-MTIHQALQ---LGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVS 485 (495)
Q Consensus 413 ~~--~~~-l~~~~-~~v~~~l~---~~~~~~~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs 485 (495)
.. ... ..+.. ........ .......-.++|++++++|.+++++.+|+++|.+++++++||+|+ +|+++|+||
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~lvGiit 269 (282)
T 2yzq_A 191 TELAASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRG-EGDLIGLIR 269 (282)
T ss_dssp ----------------------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEET-TTEEEEEEE
T ss_pred chhhhhhhhhhhcccchHHHHhHhhhhhccCCHHHhcCCCCceeCCCCCHHHHHHHHHHcCcceeEEECC-CCCEEEEEe
Confidence 00 000 00000 00000000 000011122478889999999999999999999999999999994 689999999
Q ss_pred hHHHHHHhh
Q 011043 486 LSDIFKFLL 494 (495)
Q Consensus 486 ~~DIl~~l~ 494 (495)
++||++++.
T Consensus 270 ~~Dil~~~~ 278 (282)
T 2yzq_A 270 DFDLLKVLV 278 (282)
T ss_dssp HHHHGGGGC
T ss_pred HHHHHHHHH
Confidence 999999875
No 7
>1z0n_A 5'-AMP-activated protein kinase, beta-1 subunit; beta sandwich, sugar binding protein; HET: BCD; 1.49A {Rattus norvegicus} SCOP: b.1.18.21 PDB: 1z0m_A* 2f15_A
Probab=99.91 E-value=1.6e-24 Score=175.14 Aligned_cols=88 Identities=43% Similarity=0.871 Sum_probs=78.9
Q ss_pred CCCceeeEEEEecCCCceEEEEEccCCCCCCCCCCcccCCCCeEEEEEEeCCceEEEEEEECCEEeeCCCCCeeeCCCCC
Q 011043 21 PDTVLIPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWRHDEHQPFISSEYGI 100 (495)
Q Consensus 21 ~~~~~~~~~f~~~~~~~~V~v~Gsf~~W~~~~~m~~~~~~~~~~~~~~~l~~g~~~ykf~vdg~w~~d~~~~~~~~~~g~ 100 (495)
+.+.++|++|+|+++|++|+|+|+||+|+ .++|.+. +|.|+++++|++|.|+|||+|||+|++||.+|++.|+.|+
T Consensus 6 ~~~~~~~v~F~wap~a~~V~v~GdFn~W~-~~~m~~~---~g~w~~~v~l~~G~~~YKf~VdG~~~~DP~~~~~~d~~G~ 81 (96)
T 1z0n_A 6 APAQARPTVFRWTGGGKEVYLSGSFNNWS-KLPMTRS---QNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGT 81 (96)
T ss_dssp ----CEEEEEEECSCCSCEEEEEGGGTTC-CEECEEE---TTEEEEEEEECSEEEEEEEEETTEEECCTTSCEEECTTSC
T ss_pred CCCCceEEEEEECCCCcEEEEEEEeCCCc-cccCEEC---CCEEEEEEEccCCCEEEEEEECCeEEcCCCCCeEECCCCC
Confidence 45677999999999999999999999999 6899874 4899999999999999999999999999999999999999
Q ss_pred eeeEEEecCCCC
Q 011043 101 VNTVLLATEPNF 112 (495)
Q Consensus 101 ~nn~~~v~~~~~ 112 (495)
.||+|.|.+.+.
T Consensus 82 ~Nnvi~V~~~d~ 93 (96)
T 1z0n_A 82 VNNIIQVKKTDF 93 (96)
T ss_dssp EEEEEEECSCTT
T ss_pred EeEEEEEcCCCc
Confidence 999999987653
No 8
>2qlv_B Protein SIP2, protein SPM2; heterotrimer, ATP-binding, carbohydrate metabolism, kinase, membrane, nucleotide-binding, nucleus; 2.60A {Saccharomyces cerevisiae} SCOP: b.1.18.21 d.353.1.1
Probab=99.90 E-value=4.8e-24 Score=201.72 Aligned_cols=90 Identities=24% Similarity=0.610 Sum_probs=81.7
Q ss_pred ceeeEEEEecCCCceEEEEEccCCCCCCCCCCcccCCCCeEEEEEEeCCceEEEEEEECCEEeeCCCCCeeeCCCCCeee
Q 011043 24 VLIPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWRHDEHQPFISSEYGIVNT 103 (495)
Q Consensus 24 ~~~~~~f~~~~~~~~V~v~Gsf~~W~~~~~m~~~~~~~~~~~~~~~l~~g~~~ykf~vdg~w~~d~~~~~~~~~~g~~nn 103 (495)
.++|++|+|+++|++|+|+|||++|++.++|.|.++.+|.|++++.|+||.|+|||+|||+|++|+.+|++.|+.|+.||
T Consensus 2 ~~vpv~f~W~~~a~~V~V~GsF~~W~~~~~m~k~~~~~G~f~~tv~LppG~y~YKFiVDG~w~~Dp~~p~~~d~~G~~nN 81 (252)
T 2qlv_B 2 LMVPVEIRWQQGGSKVYVTGSFTKWRKMIGLIPDSDNNGSFHVKLRLLPGTHRFRFIVDNELRVSDFLPTATDQMGNFVN 81 (252)
T ss_dssp CCEEEEEEECSCCSCEEEEEGGGTTSSCEECEECSSSTTCEEEEEEECSEEEEEEEEETTEEECCTTSCEEBCSSCCCEE
T ss_pred CcEEEEEEEeCCCcEEEEEEEeCCCcCcccceeccCCCCcEEEEEECCCCEEEEEEEECCEEEeCCCCCEEecCCCcCcc
Confidence 46899999999999999999999999888999865668999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCC
Q 011043 104 VLLATEPNFM 113 (495)
Q Consensus 104 ~~~v~~~~~~ 113 (495)
+|.|.+++..
T Consensus 82 vi~V~~~~~~ 91 (252)
T 2qlv_B 82 YIEVRQPEKN 91 (252)
T ss_dssp EEEECC----
T ss_pred eeeccCcccc
Confidence 9999987544
No 9
>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*
Probab=99.89 E-value=4.7e-22 Score=193.44 Aligned_cols=196 Identities=18% Similarity=0.309 Sum_probs=155.3
Q ss_pred cccCCCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccc-ccc
Q 011043 268 KAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLP-ICA 346 (495)
Q Consensus 268 ~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~-v~~ 346 (495)
.+|.++++++.+++|+.+|+++|.+++++++||++ ++++ +++|++|.+||++++...... .++... ...
T Consensus 8 ~i~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpV~d--~~~~---~~~Givt~~di~~~~~~~~~~-----~~~~~~~~~~ 77 (280)
T 3kh5_A 8 IAQNKKIVTVYPTTTIRKALMTMNENKYRRLPVVN--AGNN---KVVGIITSMDIVDFMGGGSKY-----NLIREKHERN 77 (280)
T ss_dssp TSCCSCCCCBCTTSBHHHHHHHHHHHCCCEEEEEC--TTTC---BEEEEEEHHHHHHHTTTSGGG-----HHHHTTSTTC
T ss_pred HhcCCCcEEECCCCcHHHHHHHHHhCCCcEeeEEE--CCCC---eEEEEEEHHHHHHHhcccchh-----hhhhhccccc
Confidence 36788999999999999999999999999999993 3367 899999999999876432110 000000 000
Q ss_pred ccCcccccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHH
Q 011043 347 IPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIH 426 (495)
Q Consensus 347 l~i~~~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~ 426 (495)
+ .......++++|.++++++.+++++.+|++.|.+++++++||+|++|+++|++|.+|+++....... ...++.
T Consensus 78 ~-~~~~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~-----~~~~v~ 151 (280)
T 3kh5_A 78 F-LAAINEPVREIMEENVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVIRALLDKID-----ENEVID 151 (280)
T ss_dssp H-HHHTTSBGGGTSBCSCCCEETTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHGGGSC-----TTCBSG
T ss_pred h-hHHhhhhHHHhcCCCCEEECCCCCHHHHHHHHHhCCCCEEEEEcCCCEEEEEEEHHHHHHHHhhcCC-----CCCCHH
Confidence 0 0001124555698899999999999999999999999999999999999999999999987654322 112444
Q ss_pred HHHHcCCCCCCCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHhh
Q 011043 427 QALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 494 (495)
Q Consensus 427 ~~l~~~~~~~~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l~ 494 (495)
+ +|.+++.++.+++++.++++.|.+++++++||++ +|+++|+||..||++++.
T Consensus 152 ~-------------~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~--~~~~~Givt~~dl~~~~~ 204 (280)
T 3kh5_A 152 D-------------YITRDVIVATPGERLKDVARTMVRNGFRRLPVVS--EGRLVGIITSTDFIKLLG 204 (280)
T ss_dssp G-------------GCBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHT
T ss_pred H-------------HhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEE--CCEEEEEEEHHHHHHHHh
Confidence 4 4577899999999999999999999999999996 599999999999998863
No 10
>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1
Probab=99.88 E-value=2.5e-22 Score=197.53 Aligned_cols=193 Identities=18% Similarity=0.234 Sum_probs=156.4
Q ss_pred CCCcccCCCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCccccccc
Q 011043 265 SHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPI 344 (495)
Q Consensus 265 ~~g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v 344 (495)
.++++|.++++++.+++|+.+|++.|.+++++++||+ + + +++|++|..||++++...... ....
T Consensus 21 ~V~dim~~~~~~v~~~~~v~~a~~~m~~~~~~~~~V~---d--~---~l~GivT~~Di~~~~~~~~~~--------~~~~ 84 (296)
T 3ddj_A 21 NIETLMIKNPPILSKEDRLGSAFKKINEGGIGRIIVA---N--E---KIEGLLTTRDLLSTVESYCKD--------SCSQ 84 (296)
T ss_dssp SGGGTCEESCCEECTTSBHHHHHHHTTGGGCCEEEEE---S--S---SEEEEEEHHHHHGGGTTCC-----------CCH
T ss_pred CHHHhccCCCcEECCCccHHHHHHHHHHCCCceEEEE---C--C---eEEEEEeHHHHHHHhcccccc--------cccc
Confidence 4466899999999999999999999999999999999 3 6 899999999999876432110 0000
Q ss_pred ccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccC
Q 011043 345 CAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMT 424 (495)
Q Consensus 345 ~~l~i~~~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~ 424 (495)
+.+ .......++++|.++++++.+++++.+|++.|.+++++++||+|++|+++|++|.+|++....... ...+
T Consensus 85 ~~~-~~~~~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~lvGivt~~dl~~~~~~~~------~~~~ 157 (296)
T 3ddj_A 85 GDL-YHISTTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYKDLD------EIFP 157 (296)
T ss_dssp HHH-HHHHTSBGGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHGGGGGGSC------CCCB
T ss_pred hhh-HHHhcccHHHhccCCCEEEcCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHhhhccc------cccc
Confidence 000 000012345558889999999999999999999999999999998999999999999987654321 2357
Q ss_pred HHHHHHcCCCCCCCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHhh
Q 011043 425 IHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 494 (495)
Q Consensus 425 v~~~l~~~~~~~~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l~ 494 (495)
+.++| .+++.++.+++++.+|++.|.+++++++||+|+ +|+++|+||..||++++.
T Consensus 158 v~~~m-------------~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~ 213 (296)
T 3ddj_A 158 VKVFM-------------STKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDD-DNKVVGIVTVVNAIKQLA 213 (296)
T ss_dssp HHHHS-------------BCSCCCEETTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHH
T ss_pred HHHhh-------------cCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCEEEEEEEHHHHHHHHH
Confidence 77754 678899999999999999999999999999994 799999999999998763
No 11
>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana}
Probab=99.85 E-value=9e-22 Score=192.60 Aligned_cols=86 Identities=24% Similarity=0.458 Sum_probs=79.3
Q ss_pred CceeeEEEEecC-CCceEEEEEccCCCCCCCCCCcccCCCCeEEEEEEeCCceEEEEEEECCEEeeCCCCCee-eCCCCC
Q 011043 23 TVLIPMRFVWPY-GGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWRHDEHQPFI-SSEYGI 100 (495)
Q Consensus 23 ~~~~~~~f~~~~-~~~~V~v~Gsf~~W~~~~~m~~~~~~~~~~~~~~~l~~g~~~ykf~vdg~w~~d~~~~~~-~~~~g~ 100 (495)
....|++|+|++ +|++|+|+||||+|+..+||.|.+ ++|.|++++.||||.|+|||+|||+|++||++|.+ .|+.|+
T Consensus 167 ~~k~~v~f~~~~~~~~~V~v~GsF~~W~~~~~l~k~~-~~g~~~~~~~L~~G~y~YkFiVDG~w~~d~~~~~~~~d~~G~ 245 (294)
T 3nme_A 167 LKRKTVTLTLKDKGFSRVEISGLDIGWGQRIPLTLGK-GTGFWILKRELPEGQFEYKYIIDGEWTHNEAEPFIGPNKDGH 245 (294)
T ss_dssp CCCEEEEEEEECSSCSCEEEEETTTEEEEEEECEECT-TTCEEEEEEEECSEEEEEEEEETTEEECCTTSCEECSCTTSC
T ss_pred cccccceeeeccCCCCEEEEEEeccCCCCcccceEcC-CCCEEEEEEECCCceEEEEEEECCEEeeCCCCCeeeECCCCC
Confidence 356899999999 789999999999999878999863 47999999999999999999999999999999975 799999
Q ss_pred eeeEEEecC
Q 011043 101 VNTVLLATE 109 (495)
Q Consensus 101 ~nn~~~v~~ 109 (495)
+||+|.|.+
T Consensus 246 ~nn~~~v~~ 254 (294)
T 3nme_A 246 TNNYAKVVD 254 (294)
T ss_dssp CEEEEEECC
T ss_pred EeEEEEECC
Confidence 999999986
No 12
>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*
Probab=99.85 E-value=5.6e-21 Score=190.86 Aligned_cols=208 Identities=16% Similarity=0.249 Sum_probs=160.5
Q ss_pred CCccc--CCCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccc
Q 011043 266 HGKAF--PRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLP 343 (495)
Q Consensus 266 ~g~~~--~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~ 343 (495)
++++| .++++++++++++.+|++.|.+++++++||++ ++.+ +++|++|..|++.++...+..... ....
T Consensus 37 v~dim~p~~~v~~v~~~~~v~~a~~~~~~~~~~~~pV~d--~~~~---~~vGivt~~Dll~~l~~~~~~~~~----~~~~ 107 (330)
T 2v8q_E 37 CYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWD--SKKQ---SFVGMLTITDFINILHRYYKSALV----QIYE 107 (330)
T ss_dssp GGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEE--TTTT---EEEEEEEHHHHHHHHHHHHHHHTT----TCCC
T ss_pred HhhhccCCCcEEEEeCCCcHHHHHHHHHHcCCcEEEEEe--CCCC---eEEEEEEHHHHHHHHHHHHhcccc----chhH
Confidence 45678 77899999999999999999999999999995 3335 899999999999887654311000 0011
Q ss_pred cccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcC-CCcEEEEEeHHHHHHHHhhcccc--cCcc
Q 011043 344 ICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDD-NDSLLDIYCRSDITALAKDKAYA--HINL 420 (495)
Q Consensus 344 v~~l~i~~~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~-~g~lvGivs~~Dl~~~~~~~~~~--~l~~ 420 (495)
+....+..+...++++|.++++++.+++++.+|++.|.+++++++||+|+ +|+++|++|.+|+++........ ...+
T Consensus 108 l~~~~~~~~~~~~~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~dl~~~~~~~~~~~~~~~~ 187 (330)
T 2v8q_E 108 LEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITEFPKPEF 187 (330)
T ss_dssp GGGCBHHHHHHHHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHHHSCSSSCCGG
T ss_pred HhhccHHHHHHHHhhcccCCceEeCCCCCHHHHHHHHHHCCCCeEEEEeCCCCcEEEEEcHHHHHHHHHHHhhccCchhh
Confidence 12222333334456778899999999999999999999999999999998 89999999999999876432110 0011
Q ss_pred cccCHHHHHHcCCCCCCCccccC-CcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHhh
Q 011043 421 SEMTIHQALQLGQDSYSPYELRS-QRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 494 (495)
Q Consensus 421 ~~~~v~~~l~~~~~~~~~~~~m~-~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l~ 494 (495)
...++.++. +|. +++.++.+++++.+|++.|.+++++++||+|+ +|+++|+||..||++++.
T Consensus 188 ~~~~v~~~~-----------v~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~-~~~l~Giit~~dl~~~~~ 250 (330)
T 2v8q_E 188 MSKSLEELQ-----------IGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDE-KGRVVDIYSKFDVINLAA 250 (330)
T ss_dssp GGSBHHHHT-----------CSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECT-TSBEEEEEEGGGTGGGGG
T ss_pred hcCCHHHhc-----------ccCcCCceEECCCCCHHHHHHHHHHcCCCeEEEECC-CCcEEEEEEHHHHHHHHh
Confidence 123455432 244 67899999999999999999999999999994 799999999999998764
No 13
>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C
Probab=99.83 E-value=9.1e-20 Score=181.41 Aligned_cols=186 Identities=18% Similarity=0.186 Sum_probs=149.9
Q ss_pred cceEEecCCCCHHHHHHHHHHcCCcEeeeeeCCCC----eEEEEeehHHHHHHHHHHhcCCCCCChhhHhhhhHHHHHHH
Q 011043 180 GKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKA----RFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEG 255 (495)
Q Consensus 180 ~~vi~l~~~~~v~~A~~~l~e~~i~~~Pv~d~~~~----~~vGilt~~Dii~~l~~~~~~~~~l~~~~l~~~~i~~~~~~ 255 (495)
..+++++++.++.+|++.|.+++++.+||+|...+ +++|++|..|+++++...... ..+..
T Consensus 122 ~~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~~~l~Givt~~di~~~l~~~~~~------~~~~~--------- 186 (323)
T 3t4n_C 122 LDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRE------THFLK--------- 186 (323)
T ss_dssp --CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHHHCGG------GGGCC---------
T ss_pred CCceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCCCccceEEEecHHHHHHHHHhcCCc------hhhhh---------
Confidence 47889999999999999999999999999997532 499999999999887543211 00000
Q ss_pred HhhhccccCCCCcc---cCCCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhcc
Q 011043 256 KAYLNRQIDSHGKA---FPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRH 332 (495)
Q Consensus 256 ~~~~~~~~~~~g~~---~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~ 332 (495)
..++++ |.++++++.+++++.+|+++|.+++++++||+ +++| +++|++|..|+++++......
T Consensus 187 --------~~v~~~~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~pVv---d~~~---~~~Giit~~dl~~~~~~~~~~ 252 (323)
T 3t4n_C 187 --------IPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPII---DENG---YLINVYEAYDVLGLIKGGIYN 252 (323)
T ss_dssp --------SBGGGTTCSBCTTCCCBCTTSBHHHHHHHHHHHTCSEEEEE---CTTC---BEEEEEETTHHHHHHHTTHHH
T ss_pred --------CcHHHcCCCCCCCcEEECCCCcHHHHHHHHHHcCCCEEEEE---CCCC---eEEEEEeHHHHHHHHhhchhh
Confidence 111234 77899999999999999999999999999999 4567 899999999999987653211
Q ss_pred CCCCCcccccccccccCcccccccCCCCCC------CceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHH
Q 011043 333 CSSSLPILKLPICAIPVGTWVPKIGEPNRR------PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDI 406 (495)
Q Consensus 333 ~~~~~~~l~~~v~~l~i~~~~~~v~~~m~~------~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl 406 (495)
.+..+++++ |.+ +++++.+++++.+|++.|.+++++++||+|++|+++|+||.+||
T Consensus 253 ------~~~~~v~~~------------m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~l~Giit~~Di 314 (323)
T 3t4n_C 253 ------DLSLSVGEA------------LMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDI 314 (323)
T ss_dssp ------HTTSBHHHH------------GGGSCTTCCCCEEECTTCBHHHHHHHHHHSCCCEEEEECTTSBEEEEEEHHHH
T ss_pred ------hccCCHHHH------------HhhccccCCCCEEECCCCCHHHHHHHHHHhCCCEEEEECCCCcEEEEEEHHHH
Confidence 123445554 555 78999999999999999999999999999999999999999999
Q ss_pred HHHHhh
Q 011043 407 TALAKD 412 (495)
Q Consensus 407 ~~~~~~ 412 (495)
++++..
T Consensus 315 l~~l~~ 320 (323)
T 3t4n_C 315 LKYILL 320 (323)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 987643
No 14
>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1
Probab=99.82 E-value=1.5e-20 Score=183.21 Aligned_cols=174 Identities=16% Similarity=0.228 Sum_probs=130.7
Q ss_pred cccCCCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccc
Q 011043 268 KAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAI 347 (495)
Q Consensus 268 ~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l 347 (495)
++|.++++++.+++++.+|+++|.+++++++||++ +++ +++|+++..|+++.+. ..+++
T Consensus 5 ~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~pV~d---~~~---~~~Giv~~~dl~~~~~-------------~~~v~-- 63 (282)
T 2yzq_A 5 TIMTQNPVTITLPATRNYALELFKKYKVRSFPVVN---KEG---KLVGIISVKRILVNPD-------------EEQLA-- 63 (282)
T ss_dssp HHSEESCCCEESSCC------------CCEEEEEC---TTC---CEEEEEESSCC-------------------------
T ss_pred HhccCCCeEECCCCcHHHHHHHHHHcCCCeEEEEc---CCC---cEEEEEEHHHHHhhhc-------------cCCHH--
Confidence 46788899999999999999999999999999993 356 8999999999985431 12333
Q ss_pred cCcccccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH-HHhhcccccCcccccCHH
Q 011043 348 PVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA-LAKDKAYAHINLSEMTIH 426 (495)
Q Consensus 348 ~i~~~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~-~~~~~~~~~l~~~~~~v~ 426 (495)
++|.+++.++.+++++.+|++.|.+++.+++||+|++|+++|++|.+|+++ ....+.. ....++.
T Consensus 64 ----------~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~~~~----~~~~~v~ 129 (282)
T 2yzq_A 64 ----------MLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAKSEK----YKGVEIE 129 (282)
T ss_dssp ----------CCCBSCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCSG----GGGCBST
T ss_pred ----------HHcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhccCC----cccCcHH
Confidence 347778899999999999999999999999999998899999999999998 6543200 1123333
Q ss_pred HHHHcCCCCCCCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHH
Q 011043 427 QALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIF 490 (495)
Q Consensus 427 ~~l~~~~~~~~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl 490 (495)
+ +|.+++.++.+++++.++++.|.+++++++||+|+ +|+++|+||..||+
T Consensus 130 ~-------------~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~~~~~Giit~~dl~ 179 (282)
T 2yzq_A 130 P-------------YYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDS-EGNLVGIVDETDLL 179 (282)
T ss_dssp T-------------TSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEECT-TSCEEEEEEGGGGG
T ss_pred H-------------HhCCCCEEECCCCCHHHHHHHHHHcCCcEEEEEcC-CCeEEEEEEHHHHh
Confidence 3 56778999999999999999999999999999994 68999999999998
No 15
>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*
Probab=99.81 E-value=1.7e-19 Score=180.27 Aligned_cols=211 Identities=12% Similarity=0.167 Sum_probs=153.1
Q ss_pred CCCcccCC--CceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCccccc
Q 011043 265 SHGKAFPR--PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKL 342 (495)
Q Consensus 265 ~~g~~~~~--~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~ 342 (495)
.++++|.+ +++++++++|+.+|++.|.+++++++||++ ++.+ +++|+++.+|++.++......... ...+ .
T Consensus 23 ~v~dim~~~~~vv~v~~~~tv~~a~~~~~~~~~~~~pV~d--~~~~---~~vGiv~~~Dl~~~~~~~~~~~~~-~~~~-~ 95 (334)
T 2qrd_G 23 TSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWD--SEAN---KFAGLLTMADFVNVIKYYYQSSSF-PEAI-A 95 (334)
T ss_dssp BGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEE--TTTT---EEEEEECHHHHHHHHHHHHHHCSC-GGGG-G
T ss_pred chhhhCCCCCCEEEEcCCCCHHHHHHHHHHcCCeEEEEEe--CCCC---eEEEEEEHHHHHHHHHHHhhccCC-ccHH-H
Confidence 34567854 488999999999999999999999999994 3346 899999999999877543221000 0000 0
Q ss_pred ccccccCcccccccCCCCCCCc--eeecCCCCHHHHHHHHHHCCCCEEEEEcCCC-c----EEEEEeHHHHHHHHhhccc
Q 011043 343 PICAIPVGTWVPKIGEPNRRPL--AMLRPSASLSAALNLLVQAQVSSIPIVDDND-S----LLDIYCRSDITALAKDKAY 415 (495)
Q Consensus 343 ~v~~l~i~~~~~~v~~~m~~~~--~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g-~----lvGivs~~Dl~~~~~~~~~ 415 (495)
.+....+..+....+++|.+++ +++.+++++.++++.|.+++++++||+|+++ + ++|++|.+|+++.......
T Consensus 96 ~~~~~~~~~i~~~l~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~~~~Givt~~dl~~~~~~~~~ 175 (334)
T 2qrd_G 96 EIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCK 175 (334)
T ss_dssp GGGSCBHHHHHHHHHHHTCSCSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEEETTTTEEEEEEEEEHHHHHHHHHHHCG
T ss_pred HHhhhchhhHHHHHHhhccCCCceeeeCCCCcHHHHHHHHHHCCceEEEEEeCCCCcCccceEEEeeHHHHHHHHHhhcc
Confidence 0111111111111122355556 8999999999999999999999999998765 4 9999999999986643211
Q ss_pred ccCcccccCHHHHHHcCCCCCCCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHhh
Q 011043 416 AHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 494 (495)
Q Consensus 416 ~~l~~~~~~v~~~l~~~~~~~~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l~ 494 (495)
...+...++.++. .+|.+++.++.+++++.+|++.|.+++++++||+|+ +|+++|+||..||++++.
T Consensus 176 -~~~~~~~~v~~l~----------~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd~-~~~~~Giit~~dl~~~~~ 242 (334)
T 2qrd_G 176 -ETAMLRVPLNQMT----------IGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNS-EGTLLNVYESVDVMHLIQ 242 (334)
T ss_dssp -GGGGCCCBGGGSS----------CSBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEETHHHHHHHT
T ss_pred -chhhhhCcHHHhC----------CcccCCceEECCCCcHHHHHHHHHHcCCcEEEEEcC-CCcEEEEEEHHHHHHHhh
Confidence 1111234444421 035778999999999999999999999999999994 689999999999998764
No 16
>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}
Probab=99.78 E-value=1.9e-19 Score=162.33 Aligned_cols=136 Identities=20% Similarity=0.331 Sum_probs=102.5
Q ss_pred CCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccC-c--ccccCH---HHHHH
Q 011043 357 GEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHI-N--LSEMTI---HQALQ 430 (495)
Q Consensus 357 ~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l-~--~~~~~v---~~~l~ 430 (495)
+++|.++++++.+++++.+|++.|.+++++++||+|++|+++|+||.+|+++.......... . ...... .....
T Consensus 21 ~diM~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (170)
T 4esy_A 21 RDILTSPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQNGHLVGIITESDFLRGSIPFWIYEASEILSRAIPAPEVEHLFE 100 (170)
T ss_dssp GGGCCSCCCCEETTSBHHHHHHHHHHTTCSEEEEECTTSCEEEEEEGGGGGGGTCCTTHHHHHHHHTTTSCHHHHHHHHH
T ss_pred HHhcCCCCcEECCcCcHHHHHHHHHHcCCeEEEEEcCCccEEEEEEHHHHHHHHhhccccchhhhhhhccchhhHHhhhc
Confidence 34499999999999999999999999999999999999999999999999764321110000 0 000000 00000
Q ss_pred cCCCCCCCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 011043 431 LGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 495 (495)
Q Consensus 431 ~~~~~~~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l~~ 495 (495)
... .....++|++++++|++++++.+|+++|.+++++++||+| +|+++|+||++||+++|+.
T Consensus 101 ~~~-~~~v~~im~~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd--~g~lvGivt~~Dil~~l~~ 162 (170)
T 4esy_A 101 TGR-KLTASAVMTQPVVTAAPEDSVGSIADQMRRHGIHRIPVVQ--DGVPVGIVTRRDLLKLLLL 162 (170)
T ss_dssp HHT-TCBHHHHCBCCSCCBCTTSBHHHHHHHHHHTTCSEEEEEE--TTEEEEEEEHHHHTTTSCC
T ss_pred ccc-ccchhhhcccCcccCCcchhHHHHHHHHHHcCCcEEEEEE--CCEEEEEEEHHHHHHHHHh
Confidence 000 0011236789999999999999999999999999999999 4999999999999998863
No 17
>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}
Probab=99.74 E-value=1.8e-17 Score=145.55 Aligned_cols=118 Identities=19% Similarity=0.308 Sum_probs=103.5
Q ss_pred cCCCCCC--CceeecCCCCHHHHHHHHHHCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcC
Q 011043 356 IGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLG 432 (495)
Q Consensus 356 v~~~m~~--~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~-g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~ 432 (495)
++++|.+ +++++.+++++.+|++.|.+++++++||+|++ |+++|+||.+|+++...... ..++.+
T Consensus 25 v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~~-------~~~v~~----- 92 (148)
T 3lv9_A 25 IREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYNQKINEN-------KIELEE----- 92 (148)
T ss_dssp GGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHHHHHHHS-------CCCGGG-----
T ss_pred HHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhcCC-------CccHHH-----
Confidence 4444887 89999999999999999999999999999987 89999999999998764431 245555
Q ss_pred CCCCCCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 011043 433 QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 495 (495)
Q Consensus 433 ~~~~~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l~~ 495 (495)
+| +++.++++++++.+|++.|.+++++++||+|+ +|+++|+||+.||+++++|
T Consensus 93 --------~m-~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-~g~~~Giit~~dil~~l~~ 145 (148)
T 3lv9_A 93 --------IL-RDIIYISENLTIDKALERIRKEKLQLAIVVDE-YGGTSGVVTIEDILEEIVG 145 (148)
T ss_dssp --------TC-BCCEEEETTSBHHHHHHHHHHHTCSEEEEECT-TSSEEEEEEHHHHHHHHHH
T ss_pred --------hc-CCCeEECCCCCHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEEHHHHHHHHhC
Confidence 45 67899999999999999999999999999994 7999999999999999875
No 18
>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}
Probab=99.74 E-value=1.3e-17 Score=143.09 Aligned_cols=120 Identities=16% Similarity=0.305 Sum_probs=103.9
Q ss_pred ccCCCCC--CCceeecCCCCHHHHHHHHHHCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHc
Q 011043 355 KIGEPNR--RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQL 431 (495)
Q Consensus 355 ~v~~~m~--~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~-g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~ 431 (495)
+++++|. .+++++.+++++.+|++.|.+++++++||+|++ |+++|++|.+|+++....+. ...++.+++
T Consensus 7 ~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~~------~~~~v~~~m-- 78 (130)
T 3i8n_A 7 PVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQSGS------GQKQLGAVM-- 78 (130)
T ss_dssp CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHHTTT------TTSBHHHHS--
T ss_pred CHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHhcCC------CcCCHHHHh--
Confidence 3455687 456789999999999999999999999999987 89999999999998765431 245677754
Q ss_pred CCCCCCCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 011043 432 GQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 495 (495)
Q Consensus 432 ~~~~~~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l~~ 495 (495)
+++.++.+++++.+|++.|.+++++++||+|+ +|+++|+||+.||+++++|
T Consensus 79 ------------~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~-~g~~vGivt~~dil~~l~g 129 (130)
T 3i8n_A 79 ------------RPIQVVLNNTALPKVFDQMMTHRLQLALVVDE-YGTVLGLVTLEDIFEHLVG 129 (130)
T ss_dssp ------------EECCEEETTSCHHHHHHHHHHHTCCEEEEECT-TSCEEEEEEHHHHHHHHHT
T ss_pred ------------cCCcCcCCCCcHHHHHHHHHHcCCeEEEEEcC-CCCEEEEEEHHHHHHHHcC
Confidence 35789999999999999999999999999994 7999999999999999986
No 19
>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}
Probab=99.73 E-value=9e-18 Score=149.13 Aligned_cols=117 Identities=21% Similarity=0.333 Sum_probs=97.5
Q ss_pred CCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCCCCccc
Q 011043 362 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL 441 (495)
Q Consensus 362 ~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~ 441 (495)
.+++++.+++++.+|+++|.+++++++||+|++|+++|++|.+|+++...........+...++.+ +
T Consensus 25 ~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~~~lvGiit~~Di~~~~~~~~~~~~~~~~~~v~~-------------i 91 (156)
T 3k6e_A 25 KNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQMEHDLSQEIMADTDIVH-------------M 91 (156)
T ss_dssp TSSCCEETTSBHHHHHHHHTTSSSSEEEEECC-CBEEEEEEHHHHHHHHHHHTCCHHHHTTSBGGG-------------T
T ss_pred hHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEecchhhhhhhcccccccccccCHHH-------------h
Confidence 468999999999999999999999999999999999999999999986654322211122344444 5
Q ss_pred cCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHhh
Q 011043 442 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 494 (495)
Q Consensus 442 m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l~ 494 (495)
|.+++.++++++++.+|++.|.++++ +||||+ +|+++|+||++||++++.
T Consensus 92 m~~~~~~v~~~~~l~~~~~~m~~~~~--lpVVd~-~g~l~GiiT~~Dil~~~~ 141 (156)
T 3k6e_A 92 TKTDVAVVSPDFTITEVLHKLVDESF--LPVVDA-EGIFQGIITRKSILKAVN 141 (156)
T ss_dssp CBCSCCCBCTTCCHHHHHHHTTTSSE--EEEECT-TSBEEEEEEHHHHHHHHH
T ss_pred hcCCceecccccHHHHHHHHHHHcCC--eEEEec-CCEEEEEEEHHHHHHHHH
Confidence 68899999999999999999998764 999994 799999999999999873
No 20
>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}
Probab=99.73 E-value=7.1e-18 Score=144.16 Aligned_cols=118 Identities=14% Similarity=0.392 Sum_probs=100.3
Q ss_pred CCCCCCC--ceeecCCCCHHHHHHHHHHCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCC
Q 011043 357 GEPNRRP--LAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQ 433 (495)
Q Consensus 357 ~~~m~~~--~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~-g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~ 433 (495)
+++|.+. ++++.+++++.+|++.|.+++++++||+|++ |+++|++|.+|+++...... ...++.++|
T Consensus 6 ~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~------~~~~v~~~m---- 75 (127)
T 3nqr_A 6 RDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDA------EAFSMDKVL---- 75 (127)
T ss_dssp HHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGSTTC------CCCCHHHHC----
T ss_pred HHhcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhccC------CCCCHHHHc----
Confidence 3447744 8899999999999999999999999999987 89999999999987653321 246777754
Q ss_pred CCCCCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 011043 434 DSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 495 (495)
Q Consensus 434 ~~~~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l~~ 495 (495)
. ++.++.+++++.+|++.|.+++++++||+|+ +|+++|+||+.||+++++|
T Consensus 76 ---------~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~~~Giit~~dll~~l~g 126 (127)
T 3nqr_A 76 ---------R-TAVVVPESKRVDRMLKEFRSQRYHMAIVIDE-FGGVSGLVTIEDILELIVG 126 (127)
T ss_dssp ---------B-CCCEEETTCBHHHHHHHHHHTTCCEEEEECT-TSCEEEEEEHHHHHHHC--
T ss_pred ---------C-CCeEECCCCcHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEEHHHHHHHHhC
Confidence 3 3678999999999999999999999999994 7999999999999999875
No 21
>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}
Probab=99.72 E-value=5.9e-17 Score=146.20 Aligned_cols=119 Identities=19% Similarity=0.350 Sum_probs=104.5
Q ss_pred ccCCCCC--CCceeecCCCCHHHHHHHHHHCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHc
Q 011043 355 KIGEPNR--RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQL 431 (495)
Q Consensus 355 ~v~~~m~--~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~-g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~ 431 (495)
+++++|. .+++++.+++++.+|++.|.+++++++||+|++ ++++|+||.+|+++....+. ..++.+
T Consensus 43 ~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~~-------~~~v~~---- 111 (172)
T 3lhh_A 43 TISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSESIAGE-------RLELVD---- 111 (172)
T ss_dssp CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSSTTSEEEEEEHHHHHHHHHTTC-------CCCGGG----
T ss_pred CHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEEHHHHHHHHhhcC-------cccHHH----
Confidence 4556688 678999999999999999999999999999987 99999999999998765431 245555
Q ss_pred CCCCCCCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 011043 432 GQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 495 (495)
Q Consensus 432 ~~~~~~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l~~ 495 (495)
+| ++++++.+++++.+|++.|.+++++++||+|+ +|+++|+||+.||+++++|
T Consensus 112 ---------im-~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~-~g~lvGiit~~Dil~~l~~ 164 (172)
T 3lhh_A 112 ---------LV-KNCNFVPNSLSGMELLEHFRTTGSQMVFVVDE-YGDLKGLVTLQDMMDALTG 164 (172)
T ss_dssp ---------GC-BCCEEEETTCCHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHHT
T ss_pred ---------Hh-cCCeEeCCCCCHHHHHHHHHHcCCeEEEEEeC-CCCEEEEeeHHHHHHHHhC
Confidence 55 68899999999999999999999999999994 7999999999999999875
No 22
>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}
Probab=99.72 E-value=2.1e-17 Score=141.91 Aligned_cols=120 Identities=12% Similarity=0.196 Sum_probs=101.3
Q ss_pred CCCCC--CCceeecCCCCHHHHHHHHHHCCCCEEEEEcC-CCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCC
Q 011043 357 GEPNR--RPLAMLRPSASLSAALNLLVQAQVSSIPIVDD-NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQ 433 (495)
Q Consensus 357 ~~~m~--~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~-~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~ 433 (495)
+++|. ++++++.+++++.+|+++|.+++++++||+++ +|+++|++|.+|+++....+.. +...++.++
T Consensus 5 ~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~~~~~----~~~~~v~~~----- 75 (130)
T 3hf7_A 5 NDIMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKE----FTKEIMLRA----- 75 (130)
T ss_dssp HHHSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHTSSSC----CCHHHHHHH-----
T ss_pred HHhCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHhccCc----cchhhHHHh-----
Confidence 34474 46889999999999999999999999999975 5899999999999987654321 112345554
Q ss_pred CCCCCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 011043 434 DSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 495 (495)
Q Consensus 434 ~~~~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l~~ 495 (495)
| +++.++.+++++.+|++.|.+++++++||+|+ +|+++|+||+.||+++++|
T Consensus 76 --------m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~-~g~lvGiit~~Dil~~l~g 127 (130)
T 3hf7_A 76 --------A-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDE-YGDIQGLVTVEDILEEIVG 127 (130)
T ss_dssp --------S-BCCCEEETTCBHHHHHHHHHHHCCCEEEEECT-TSCEEEEEEHHHHHHHHHC
T ss_pred --------c-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEcC-CCCEEEEeeHHHHHHHHhC
Confidence 3 46889999999999999999999999999994 7999999999999999976
No 23
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*
Probab=99.72 E-value=2e-17 Score=140.01 Aligned_cols=116 Identities=20% Similarity=0.350 Sum_probs=103.0
Q ss_pred CCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCC
Q 011043 357 GEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSY 436 (495)
Q Consensus 357 ~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~ 436 (495)
+++|.+++.++.+++++.+|++.|.+++.+++||+|++|+++|+++.+|+++....+ ..++.+
T Consensus 4 ~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~~--------~~~v~~--------- 66 (122)
T 3kpb_A 4 KDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQN--------KKTIEE--------- 66 (122)
T ss_dssp HHHCCSCCCCEETTSBHHHHHHHHHHHTCSCEEEECTTSBEEEEECHHHHHHHHHTT--------CCBGGG---------
T ss_pred HHhhCCCCEEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHHHHHHhc--------ccCHHH---------
Confidence 445888999999999999999999999999999999999999999999999876543 135555
Q ss_pred CCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHhh
Q 011043 437 SPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 494 (495)
Q Consensus 437 ~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l~ 494 (495)
+|.+++.++.+++++.+|++.|.+++.+++||+|+ +|+++|+||..||++++.
T Consensus 67 ----~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~g~~~Givt~~dl~~~l~ 119 (122)
T 3kpb_A 67 ----IMTRNVITAHEDEPVDHVAIKMSKYNISGVPVVDD-YRRVVGIVTSEDISRLFG 119 (122)
T ss_dssp ----TSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHHHHHC
T ss_pred ----HhcCCCeEECCCCCHHHHHHHHHHhCCCeEEEECC-CCCEEEEEeHHHHHHHhh
Confidence 44678899999999999999999999999999994 699999999999999885
No 24
>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}
Probab=99.71 E-value=1.2e-17 Score=143.26 Aligned_cols=116 Identities=14% Similarity=0.316 Sum_probs=99.0
Q ss_pred CCCCC--CCceeecCCCCHHHHHHHHHHCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCC
Q 011043 357 GEPNR--RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQ 433 (495)
Q Consensus 357 ~~~m~--~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~-g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~ 433 (495)
+++|. .+++++.+++++.+|++.|.+++++++||+|++ |+++|+||.+|+++..... ..++.++
T Consensus 8 ~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~--------~~~v~~~----- 74 (129)
T 3jtf_A 8 ADIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYMLEP--------ALDIRSL----- 74 (129)
T ss_dssp HHHCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGGTCT--------TSCGGGG-----
T ss_pred HHhCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHhccC--------CcCHHHH-----
Confidence 34477 568899999999999999999999999999985 8999999999998754321 2455553
Q ss_pred CCCCCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 011043 434 DSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 495 (495)
Q Consensus 434 ~~~~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l~~ 495 (495)
|. ++.++.+++++.+|++.|.+++.+++||+|+ +|+++|+||+.||+++++|
T Consensus 75 --------m~-~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~-~g~~~Giit~~Dil~~l~g 126 (129)
T 3jtf_A 75 --------VR-PAVFIPEVKRLNVLLREFRASRNHLAIVIDE-HGGISGLVTMEDVLEQIVG 126 (129)
T ss_dssp --------CB-CCCEEETTCBHHHHHHHHHTSSCCEEEEECC--CCEEEEEEHHHHHHHHHH
T ss_pred --------hC-CCeEeCCCCcHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEEHHHHHHHHhC
Confidence 33 4789999999999999999999999999994 6999999999999999875
No 25
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1
Probab=99.70 E-value=1e-16 Score=136.05 Aligned_cols=118 Identities=19% Similarity=0.282 Sum_probs=103.3
Q ss_pred CCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCC
Q 011043 357 GEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSY 436 (495)
Q Consensus 357 ~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~ 436 (495)
+++|.+++.++.+++++.+|++.|.+++.+++||+| +|+++|++|.+|+++....+. .....++.+++
T Consensus 4 ~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~G~it~~dl~~~~~~~~----~~~~~~v~~~m------- 71 (125)
T 1pbj_A 4 EDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVK-EGVRVGIVTTWDVLEAIAEGD----DLAEVKVWEVM------- 71 (125)
T ss_dssp HHHCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEE-TTEEEEEEEHHHHHHHHHHTC----CTTTSBHHHHC-------
T ss_pred HHhcCCCceEECCCCcHHHHHHHHHHcCCCEEEEEe-CCeeEEEEeHHHHHHHHhcCC----cccccCHHHHc-------
Confidence 344888899999999999999999999999999999 899999999999998665432 12346777754
Q ss_pred CCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHhh
Q 011043 437 SPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 494 (495)
Q Consensus 437 ~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l~ 494 (495)
.+++.++.+++++.++++.|.+++++++||+| + |+++|+||..||++++.
T Consensus 72 ------~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd-~-~~~~Gvit~~dl~~~l~ 121 (125)
T 1pbj_A 72 ------ERDLVTISPRATIKEAAEKMVKNVVWRLLVEE-D-DEIIGVISATDILRAKM 121 (125)
T ss_dssp ------BCGGGEECTTSCHHHHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHHC
T ss_pred ------CCCCeEECCCCCHHHHHHHHHhcCCcEEEEEE-C-CEEEEEEEHHHHHHHHH
Confidence 67899999999999999999999999999999 4 99999999999999885
No 26
>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}
Probab=99.69 E-value=3.3e-17 Score=141.84 Aligned_cols=119 Identities=13% Similarity=0.277 Sum_probs=99.5
Q ss_pred CCCCC--CCceeecCCCCHHHHHHHHHHCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCC
Q 011043 357 GEPNR--RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQ 433 (495)
Q Consensus 357 ~~~m~--~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~-g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~ 433 (495)
+++|. ++++++.+++++.+|++.|.+++++++||+|++ |+++|+||.+|+++...... ....++.+
T Consensus 6 ~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~-----~~~~~v~~------ 74 (136)
T 3lfr_A 6 RDIMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLILKAD-----GDSDDVKK------ 74 (136)
T ss_dssp HHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGGSSS-----GGGCCGGG------
T ss_pred HhccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHhcc-----CCCcCHHH------
Confidence 34476 568999999999999999999999999999987 89999999999997654211 11345555
Q ss_pred CCCCCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 011043 434 DSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 495 (495)
Q Consensus 434 ~~~~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l~~ 495 (495)
+|.+ +.++.+++++.+|++.|.+++++++||+|+ +|+++|+||+.||+++++|
T Consensus 75 -------~m~~-~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~-~g~lvGiit~~Dil~~l~~ 127 (136)
T 3lfr_A 75 -------LLRP-ATFVPESKRLNVLLREFRANHNHMAIVIDE-YGGVAGLVTIEDVLEQIVG 127 (136)
T ss_dssp -------TCBC-CCEEETTCBHHHHHHHHHHHTCCEEEEECT-TSCEEEEEEHHHHHTTC--
T ss_pred -------HcCC-CeEECCCCcHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEEHHHHHHHHhC
Confidence 4444 889999999999999999999999999994 7999999999999998865
No 27
>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A
Probab=99.69 E-value=3.3e-16 Score=136.24 Aligned_cols=124 Identities=27% Similarity=0.512 Sum_probs=101.2
Q ss_pred CCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCCCCc
Q 011043 360 NRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPY 439 (495)
Q Consensus 360 m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~ 439 (495)
|.++++++.+++++.+|++.|.+++++++||+|++|+++|++|.+|+++....+.+ .....++.++|..... .
T Consensus 17 ~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~---~~~~~~v~~~m~~~~~----~ 89 (144)
T 2nyc_A 17 TQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIY---NDLSLSVGEALMRRSD----D 89 (144)
T ss_dssp BCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC-------CCSBHHHHHHHCC------
T ss_pred CCCCceEECCCCcHHHHHHHHHHcCcceeeEEcCCCcEEEEEcHHHHHHHhccccc---ccCCccHHHHHhcCcc----c
Confidence 66789999999999999999999999999999988999999999999987654321 1224678887732100 0
Q ss_pred cccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHhh
Q 011043 440 ELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 494 (495)
Q Consensus 440 ~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l~ 494 (495)
..++.++.+++++.+|++.|.+++.+++||+|+ +|+++|+||..||++++.
T Consensus 90 ---~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-~g~~~Giit~~dil~~l~ 140 (144)
T 2nyc_A 90 ---FEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDD-VGRLVGVLTLSDILKYIL 140 (144)
T ss_dssp -------CEECTTSBHHHHHHHHHHHTCSEEEEECT-TSBEEEEEEHHHHHHHHH
T ss_pred ---cCCCeEECCCCcHHHHHHHHHHCCCCEEEEECC-CCCEEEEEEHHHHHHHHH
Confidence 025889999999999999999999999999994 699999999999999875
No 28
>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A
Probab=99.69 E-value=1.2e-16 Score=138.97 Aligned_cols=119 Identities=14% Similarity=0.223 Sum_probs=102.5
Q ss_pred ccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCC--cEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcC
Q 011043 355 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDND--SLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLG 432 (495)
Q Consensus 355 ~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g--~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~ 432 (495)
+++++|.+++.++.+++++.+|++.|.+++++++||+|+++ +++|+||.+|+++....+.. .+.++.+
T Consensus 6 ~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~Givt~~dl~~~~~~~~~-----~~~~v~~----- 75 (141)
T 2rih_A 6 RTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLD-----LDGPAMP----- 75 (141)
T ss_dssp BGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTCC-----TTSBSGG-----
T ss_pred EHHHHhcCCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCcceeEEEEEHHHHHHHHhcCCC-----CCCCHHH-----
Confidence 45556988999999999999999999999999999999888 99999999999986644311 1244555
Q ss_pred CCCCCCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHh
Q 011043 433 QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 493 (495)
Q Consensus 433 ~~~~~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l 493 (495)
+|.+++.++.++ ++.+|++.|.+++++++||+|+ +|+++|+||..||++++
T Consensus 76 --------~m~~~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~-~g~~~Giit~~dll~~~ 126 (141)
T 2rih_A 76 --------IANSPITVLDTD-PVHVAAEKMRRHNIRHVVVVNK-NGELVGVLSIRDLCFER 126 (141)
T ss_dssp --------GCBCCCEEETTS-BHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHSCH
T ss_pred --------HcCCCCeEEcCC-CHHHHHHHHHHcCCeEEEEEcC-CCcEEEEEEHHHHHHHH
Confidence 457789999999 9999999999999999999994 79999999999998765
No 29
>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}
Probab=99.69 E-value=6.6e-17 Score=142.84 Aligned_cols=114 Identities=18% Similarity=0.318 Sum_probs=100.4
Q ss_pred CCC--CceeecCCCCHHHHHHHHHHCCCCEEEEE-cC-CCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCC
Q 011043 360 NRR--PLAMLRPSASLSAALNLLVQAQVSSIPIV-DD-NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDS 435 (495)
Q Consensus 360 m~~--~~~~v~~~~sl~~a~~~m~~~~~~~lpVv-d~-~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~ 435 (495)
|.+ +++++.+++++.+|++.|.+++++++||+ |+ +|+++|+||.+|+++...... ..++.+
T Consensus 26 M~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~~~~-------~~~v~~-------- 90 (153)
T 3oco_A 26 MVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQARIDD-------KAKIST-------- 90 (153)
T ss_dssp SEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHHHHT-------TSBGGG--------
T ss_pred ecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHhcCC-------CCcHHH--------
Confidence 775 78999999999999999999999999999 65 489999999999998665431 245555
Q ss_pred CCCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 011043 436 YSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 495 (495)
Q Consensus 436 ~~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l~~ 495 (495)
+| +++.++.+++++.+|++.|.+++++++||+|+ +|+++|+||+.||+++++|
T Consensus 91 -----~m-~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~-~g~~vGivt~~dil~~l~~ 143 (153)
T 3oco_A 91 -----IM-RDIVSVPENMKVPDVMEEMSAHRVPMAIVIDE-YGGTSGIITDKDVYEELFG 143 (153)
T ss_dssp -----TC-BCCEEEETTSBHHHHHHHHHHTTCSCEEEECT-TSCEEEEECHHHHHHHHHC
T ss_pred -----Hh-CCCeEECCCCCHHHHHHHHHHcCCcEEEEEeC-CCCEEEEeeHHHHHHHHhc
Confidence 55 68999999999999999999999999999994 7999999999999999875
No 30
>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*
Probab=99.69 E-value=1.3e-16 Score=140.25 Aligned_cols=118 Identities=12% Similarity=0.298 Sum_probs=102.9
Q ss_pred ccCCCCCC--CceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcC
Q 011043 355 KIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLG 432 (495)
Q Consensus 355 ~v~~~m~~--~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~ 432 (495)
+++++|.+ +++++.+++++.+|++.|.+++++++||+|++|+++|+||.+|+++....+. .+...++.+++
T Consensus 29 ~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~----~~~~~~v~~~m--- 101 (149)
T 3k2v_A 29 RVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDDMNIIGIFTDGDLRRVFDTGV----DMRDASIADVM--- 101 (149)
T ss_dssp BGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTTCBEEEEEEHHHHHHHHCSSS----CCTTCBHHHHS---
T ss_pred CHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCCCcEEEEecHHHHHHHHhcCC----CcccCcHHHHc---
Confidence 34555888 8999999999999999999999999999998999999999999998765432 12356788755
Q ss_pred CCCCCCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHH
Q 011043 433 QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 491 (495)
Q Consensus 433 ~~~~~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~ 491 (495)
.+++.+|.+++++.+|++.|.+++++++||+|+ ++++|+||..||++
T Consensus 102 ----------~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~~~~Giit~~dil~ 148 (149)
T 3k2v_A 102 ----------TRGGIRIRPGTLAVDALNLMQSRHITCVLVADG--DHLLGVVHMHDLLR 148 (149)
T ss_dssp ----------EESCCEECTTCBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHTC
T ss_pred ----------CCCCeEECCCCCHHHHHHHHHHcCCCEEEEecC--CEEEEEEEHHHhhc
Confidence 667899999999999999999999999999994 49999999999985
No 31
>2uv4_A 5'-AMP-activated protein kinase subunit gamma-1; transferase, CBS domain, lipid synthesis, fatty acid biosynthesis; HET: AMP; 1.33A {Homo sapiens} PDB: 2uv5_A* 2uv6_A* 2uv7_A*
Probab=99.69 E-value=1.4e-16 Score=140.59 Aligned_cols=135 Identities=33% Similarity=0.589 Sum_probs=108.4
Q ss_pred cccccccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCc
Q 011043 340 LKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHIN 419 (495)
Q Consensus 340 l~~~v~~l~i~~~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~ 419 (495)
....++.+.++.+ +++.++.+++++.+|++.|.+++++++||+|++|+++|+||.+|+++......+.
T Consensus 16 ~~~~l~~~~v~~~---------~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~vGivt~~dl~~~~~~~~~~--- 83 (152)
T 2uv4_A 16 MSKSLEELQIGTY---------ANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYN--- 83 (152)
T ss_dssp HTSBHHHHTCSBC---------SSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEHHHHHHHHHCSSCC---
T ss_pred HHhhHHHccCCcc---------CCceEeCCCCcHHHHHHHHHHcCCceEeEECCCCcEEEEEeHHHHHHHhcchhhh---
Confidence 3455666655443 4688899999999999999999999999999889999999999999876543221
Q ss_pred ccccCHHHHHHcCCCCCCCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHhh
Q 011043 420 LSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 494 (495)
Q Consensus 420 ~~~~~v~~~l~~~~~~~~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l~ 494 (495)
..+.++.+++..+ ++|.+++.++.+++++.+|++.|.+.+++++||+|+ +|+++|+||..||++++.
T Consensus 84 ~~~~~v~~~m~~~-------~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~~vGiit~~dil~~l~ 150 (152)
T 2uv4_A 84 NLDVSVTKALQHR-------SHYFEGVLKCYLHETLETIINRLVEAEVHRLVVVDE-NDVVKGIVSLSDILQALV 150 (152)
T ss_dssp CTTSBGGGGGGTC-------CHHHHTCSEECTTSBHHHHHHHHHHHTCSEEEEECT-TSBEEEEEEHHHHHHHHC
T ss_pred hhcchHHHHHhhh-------hcccCCCeEECCCCcHHHHHHHHHHcCCeEEEEECC-CCeEEEEEEHHHHHHHHH
Confidence 1235666655211 122367899999999999999999999999999994 699999999999999885
No 32
>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}
Probab=99.68 E-value=6.4e-17 Score=145.61 Aligned_cols=155 Identities=19% Similarity=0.269 Sum_probs=113.7
Q ss_pred HHHHHHHHhhhccccccCCCCcceEEecCCCCHHHHHHHHHHcCCcEeeeeeCCCCeEEEEeehHHHHHHHHHHhcCCCC
Q 011043 159 SRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSN 238 (495)
Q Consensus 159 ~~~~i~~~l~~~~~~d~~p~s~~vi~l~~~~~v~~A~~~l~e~~i~~~Pv~d~~~~~~vGilt~~Dii~~l~~~~~~~~~ 238 (495)
.++.+...|++..+.|+| +.++++++++.|+.+|++.|.+++++++||+|. .++++|++|..|+++.+......
T Consensus 7 ~~~~~~~~l~~~~V~diM--~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~-~g~lvGiit~~Dll~~~~~~~~~--- 80 (170)
T 4esy_A 7 RRRAIARAIRQVPIRDIL--TSPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQ-NGHLVGIITESDFLRGSIPFWIY--- 80 (170)
T ss_dssp HHHHHHHHHHTSBGGGGC--CSCCCCEETTSBHHHHHHHHHHTTCSEEEEECT-TSCEEEEEEGGGGGGGTCCTTHH---
T ss_pred HHHHHHHHHcCCCHHHhc--CCCCcEECCcCcHHHHHHHHHHcCCeEEEEEcC-CccEEEEEEHHHHHHHHhhcccc---
Confidence 456778889999999999 458999999999999999999999999999996 47999999999997644111000
Q ss_pred CChhhHhh-hhHHHHHHHHhhhccccCCCCcccCCCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEE
Q 011043 239 LTEEELET-HTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIA 317 (495)
Q Consensus 239 l~~~~l~~-~~i~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGil 317 (495)
...+.+.. ............ .....++.+|.++++++.+++++.+|+++|.+++++++||++ +| +++|++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~im~~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd----~g---~lvGiv 151 (170)
T 4esy_A 81 EASEILSRAIPAPEVEHLFET--GRKLTASAVMTQPVVTAAPEDSVGSIADQMRRHGIHRIPVVQ----DG---VPVGIV 151 (170)
T ss_dssp HHHHHHTTTSCHHHHHHHHHH--HTTCBHHHHCBCCSCCBCTTSBHHHHHHHHHHTTCSEEEEEE----TT---EEEEEE
T ss_pred chhhhhhhccchhhHHhhhcc--ccccchhhhcccCcccCCcchhHHHHHHHHHHcCCcEEEEEE----CC---EEEEEE
Confidence 00000000 000011100000 011233557999999999999999999999999999999993 46 899999
Q ss_pred ehhhHHHHHHh
Q 011043 318 SLSGILKCVCR 328 (495)
Q Consensus 318 s~~dIl~~l~~ 328 (495)
|..||++++..
T Consensus 152 t~~Dil~~l~~ 162 (170)
T 4esy_A 152 TRRDLLKLLLL 162 (170)
T ss_dssp EHHHHTTTSCC
T ss_pred EHHHHHHHHHh
Confidence 99999987643
No 33
>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A
Probab=99.68 E-value=7.7e-17 Score=138.58 Aligned_cols=119 Identities=18% Similarity=0.276 Sum_probs=102.4
Q ss_pred CCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH-HHhhcccccCcccccCHHHHHHcCCCCC
Q 011043 358 EPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA-LAKDKAYAHINLSEMTIHQALQLGQDSY 436 (495)
Q Consensus 358 ~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~-~~~~~~~~~l~~~~~~v~~~l~~~~~~~ 436 (495)
++|.+++.++.+++++.+|++.|.+++.+++||+|++|+++|++|.+|++. +...+. .....++.+++
T Consensus 12 ~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~----~~~~~~v~~~m------- 80 (133)
T 1y5h_A 12 DIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGL----DPNTATAGELA------- 80 (133)
T ss_dssp HHSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGGTC----CTTTSBHHHHH-------
T ss_pred HHhcCCceEeCCCCCHHHHHHHHHHhCCCeEEEECCCCeEEEEEeHHHHHHHHHhcCC----CccccCHHHHh-------
Confidence 348788999999999999999999999999999988899999999999984 443321 12346788866
Q ss_pred CCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 011043 437 SPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 495 (495)
Q Consensus 437 ~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l~~ 495 (495)
.+++.++.+++++.+|++.|.+++.+++||+| + |+++|+||..||++++.+
T Consensus 81 ------~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd-~-g~~~Giit~~dil~~l~~ 131 (133)
T 1y5h_A 81 ------RDSIYYVDANASIQEMLNVMEEHQVRRVPVIS-E-HRLVGIVTEADIARHLPE 131 (133)
T ss_dssp ------TTCCCCEETTCCHHHHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHTCC-
T ss_pred ------cCCCEEECCCCCHHHHHHHHHHcCCCEEEEEE-C-CEEEEEEEHHHHHHHHHh
Confidence 56789999999999999999999999999999 3 899999999999998753
No 34
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1
Probab=99.68 E-value=3e-16 Score=139.74 Aligned_cols=124 Identities=19% Similarity=0.245 Sum_probs=103.3
Q ss_pred cCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccc----cCcccccCHHHHHHc
Q 011043 356 IGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYA----HINLSEMTIHQALQL 431 (495)
Q Consensus 356 v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~----~l~~~~~~v~~~l~~ 431 (495)
++++|.++++++.+++++.+|+++|.+++++++||+|++|+++|+||.+|+++........ .......++.++
T Consensus 7 v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~~~~v~~i--- 83 (160)
T 2o16_A 7 VEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPLFEV--- 83 (160)
T ss_dssp GGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHCC---------CCCBHHHH---
T ss_pred HHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHHhhcccccccchhcccCHHHH---
Confidence 4555888899999999999999999999999999999889999999999999865432110 001123556664
Q ss_pred CCCCCCCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHhh
Q 011043 432 GQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 494 (495)
Q Consensus 432 ~~~~~~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l~ 494 (495)
|.+++.+|.+++++.+|++.|.+.+++++||+| + |+++|+||..||++++.
T Consensus 84 ----------m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~-g~lvGiit~~dil~~~~ 134 (160)
T 2o16_A 84 ----------MHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVA-K-DVLVGIITDSDFVTIAI 134 (160)
T ss_dssp ----------SCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEE-T-TEEEEEECHHHHHHHHH
T ss_pred ----------hcCCCeEECCCCCHHHHHHHHHHhCCCEEEEEE-C-CEEEEEEEHHHHHHHHH
Confidence 477899999999999999999999999999999 3 99999999999999864
No 35
>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}
Probab=99.68 E-value=1.3e-16 Score=140.12 Aligned_cols=126 Identities=19% Similarity=0.346 Sum_probs=101.6
Q ss_pred ccCCCCCC--CceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccc---------cCccccc
Q 011043 355 KIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYA---------HINLSEM 423 (495)
Q Consensus 355 ~v~~~m~~--~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~---------~l~~~~~ 423 (495)
+++++|.+ +++++.+++++.+|++.|.+++++++||+|++|+++|++|.+|++.+....... .......
T Consensus 6 ~v~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (152)
T 4gqw_A 6 TVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLALDSGDSTWKTFNAVQKLLSKTNGK 85 (152)
T ss_dssp BGGGTSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHTTCC----CCHHHHHHHTC-----CC
T ss_pred EhhhccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeCCCeEEEEEEHHHHHHhhcccCcccchHHHHHHHHHhccc
Confidence 34555877 799999999999999999999999999999889999999999998642211000 0001124
Q ss_pred CHHHHHHcCCCCCCCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHhh
Q 011043 424 TIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 494 (495)
Q Consensus 424 ~v~~~l~~~~~~~~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l~ 494 (495)
++.++ |.++++++.+++++.+|++.|.+++++++||+|+ +|+++|+||..||++++.
T Consensus 86 ~v~~~-------------m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~-~g~~~Giit~~dil~~~~ 142 (152)
T 4gqw_A 86 LVGDL-------------MTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDS-DGKLVGIITRGNVVRAAL 142 (152)
T ss_dssp BHHHH-------------SEESCCCEESSSBHHHHHHHHHHSSCCEEEEECT-TSBEEEEEEHHHHHHHHH
T ss_pred cHHHh-------------cCCCceEECCCCcHHHHHHHHHHCCCCEEEEECC-CCcEEEEEEHHHHHHHHH
Confidence 55554 4667889999999999999999999999999994 799999999999999885
No 36
>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}
Probab=99.68 E-value=3.7e-16 Score=135.06 Aligned_cols=120 Identities=19% Similarity=0.395 Sum_probs=103.2
Q ss_pred cCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHH-HHHHhhcccccCcccccCHHHHHHcCCC
Q 011043 356 IGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDI-TALAKDKAYAHINLSEMTIHQALQLGQD 434 (495)
Q Consensus 356 v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl-~~~~~~~~~~~l~~~~~~v~~~l~~~~~ 434 (495)
++++|.+++.++.+++++.+|++.|.+++.+++||+|++|+++|+++.+|+ ++....+. ..+.++.+++
T Consensus 10 v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~-----~~~~~v~~~m----- 79 (138)
T 2p9m_A 10 VKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIRDKY-----TLETTIGDVM----- 79 (138)
T ss_dssp GGGTSBCSCCCEETTSBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHHHHHTTTCC-----CSSCBHHHHS-----
T ss_pred HHHhhcCCceEECCCCcHHHHHHHHHHCCCcEEEEECCCCeEEEEEEHHHHHHHHHhhcc-----cCCcCHHHHh-----
Confidence 344588889999999999999999999999999999988999999999999 77654321 1245677754
Q ss_pred CCCCccccCCcceEecCCCCHHHHHHHHHcCC-----CcEEEEEeCCCCeEEEEEehHHHHHHhh
Q 011043 435 SYSPYELRSQRCQMCLPSDTLHKVMERLANPG-----VRRLVIVEAGSKRVEGIVSLSDIFKFLL 494 (495)
Q Consensus 435 ~~~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~-----~~~l~VVd~~~~~lvGiIs~~DIl~~l~ 494 (495)
.+++.++.+++++.+|++.|.+++ ++++||+|+ +|+++|+||..||++++.
T Consensus 80 --------~~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~-~g~~~Giit~~dll~~~~ 135 (138)
T 2p9m_A 80 --------TKDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDK-NNKLVGIISDGDIIRTIS 135 (138)
T ss_dssp --------CSSCCCEETTSBHHHHHHHHTCC-----CCCEEEEECT-TSBEEEEEEHHHHHHHHH
T ss_pred --------CCCcEEECCCCCHHHHHHHHHhcCCccccccEEEEECC-CCeEEEEEEHHHHHHHHH
Confidence 668899999999999999999999 999999994 799999999999999874
No 37
>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}
Probab=99.68 E-value=3e-16 Score=141.78 Aligned_cols=117 Identities=15% Similarity=0.193 Sum_probs=100.5
Q ss_pred cCCCCC--CCceeecCCCCHHHHHHHHHHCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcC
Q 011043 356 IGEPNR--RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLG 432 (495)
Q Consensus 356 v~~~m~--~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~-g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~ 432 (495)
++++|. ++++++.+++++.+|++.|.+++++++||+|++ |+++|+||.+||+....... ..++. +
T Consensus 38 v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl~~~~~~~~-------~~~v~--~--- 105 (173)
T 3ocm_A 38 IRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLVADLITEG-------RVRRN--R--- 105 (173)
T ss_dssp STTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHHHHHHHHHS-------SCCGG--G---
T ss_pred HHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHHHHHHhcCC-------cchhH--h---
Confidence 344585 468899999999999999999999999999876 89999999999998664331 23444 2
Q ss_pred CCCCCCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 011043 433 QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 495 (495)
Q Consensus 433 ~~~~~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l~~ 495 (495)
.++++++.+++++.+|+++|.+++++.+||+|+ +|+++||||+.||+++++|
T Consensus 106 ----------~~~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde-~g~lvGiIT~~Dil~~l~~ 157 (173)
T 3ocm_A 106 ----------LRDPIIVHESIGILRLMDTLKRSRGQLVLVADE-FGAIEGLVTPIDVFEAIAG 157 (173)
T ss_dssp ----------SBCCCEECGGGCHHHHHHHHHHSTTCCEEEECT-TCCEEEEECHHHHHHHHHC
T ss_pred ----------cCCCeEECCCCcHHHHHHHHHHcCCeEEEEEeC-CCCEEEEEeHHHHHHHHhC
Confidence 357889999999999999999999999999994 7999999999999999875
No 38
>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}
Probab=99.68 E-value=6.4e-17 Score=138.32 Aligned_cols=119 Identities=16% Similarity=0.194 Sum_probs=102.1
Q ss_pred cCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCC
Q 011043 356 IGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDS 435 (495)
Q Consensus 356 v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~ 435 (495)
++++|.+++.++.+++++.+|++.|.+++.+++||+|+ |+++|++|.+|+++....+.. ...++.+
T Consensus 7 v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~Givt~~dl~~~~~~~~~-----~~~~v~~-------- 72 (128)
T 3gby_A 7 FSYLAETDYPVFTLGGSTADAARRLAASGCACAPVLDG-ERYLGMVHLSRLLEGRKGWPT-----VKEKLGE-------- 72 (128)
T ss_dssp GGGGCBCCSCCEETTSBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHTTCSSSCC-----TTCBCCG--------
T ss_pred HHHhhcCCcceECCCCCHHHHHHHHHHCCCcEEEEEEC-CEEEEEEEHHHHHHHHhhCCc-----ccCcHHH--------
Confidence 44559999999999999999999999999999999998 999999999999975443211 1133444
Q ss_pred CCCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHhh
Q 011043 436 YSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 494 (495)
Q Consensus 436 ~~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l~ 494 (495)
+|.+++.++.+++++.+|++.|.+++.+++||+|+ +|+++|+||..||++++.
T Consensus 73 -----~m~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~-~g~~~Giit~~dll~~l~ 125 (128)
T 3gby_A 73 -----ELLETVRSYRPGEQLFDNLISVAAAKCSVVPLADE-DGRYEGVVSRKRILGFLA 125 (128)
T ss_dssp -----GGCBCCCCBCTTSBGGGSHHHHHHCSSSEEEEECT-TCBEEEEEEHHHHHHHHH
T ss_pred -----HccCCCcEECCCCCHHHHHHHHHhCCCcEEEEECC-CCCEEEEEEHHHHHHHHH
Confidence 45778899999999999999999999999999994 799999999999999874
No 39
>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*
Probab=99.67 E-value=2e-16 Score=140.63 Aligned_cols=120 Identities=17% Similarity=0.347 Sum_probs=101.5
Q ss_pred cCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCC
Q 011043 356 IGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDS 435 (495)
Q Consensus 356 v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~ 435 (495)
++++|.++ +++.+++++.+|++.|.+++++++||+|++|+++|+||.+|+++....+. .....++.++
T Consensus 19 v~~im~~~-~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~----~~~~~~v~~~------- 86 (159)
T 3fv6_A 19 VKDFQSIP-VVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRASIGQQ----ELTSVPVHII------- 86 (159)
T ss_dssp GGGSCBCC-CEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHTSCS----CTTTCBGGGT-------
T ss_pred HHHHcCCC-EEECCCCcHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHhhccC----cccCcCHHHH-------
Confidence 34448764 59999999999999999999999999998999999999999998653321 1224566664
Q ss_pred CCCccccCC--cceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCC---eEEEEEehHHHHHHhh
Q 011043 436 YSPYELRSQ--RCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSK---RVEGIVSLSDIFKFLL 494 (495)
Q Consensus 436 ~~~~~~m~~--~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~---~lvGiIs~~DIl~~l~ 494 (495)
|.+ ++.++.+++++.+|++.|.+++++++||+|+ +| +++|+||..||++++.
T Consensus 87 ------m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~~~~~vGiit~~dil~~l~ 143 (159)
T 3fv6_A 87 ------MTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKD-TDKGFEVIGRVTKTNMTKILV 143 (159)
T ss_dssp ------SEETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEE-CSSSEEEEEEEEHHHHHHHHH
T ss_pred ------HcCCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEeC-CCcceeEEEEEEHHHHHHHHH
Confidence 455 7889999999999999999999999999995 57 9999999999999875
No 40
>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1
Probab=99.67 E-value=5.2e-16 Score=134.21 Aligned_cols=119 Identities=18% Similarity=0.368 Sum_probs=102.0
Q ss_pred cCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH-HHhhcccccCcccccCHHHHHHcCCC
Q 011043 356 IGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA-LAKDKAYAHINLSEMTIHQALQLGQD 434 (495)
Q Consensus 356 v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~-~~~~~~~~~l~~~~~~v~~~l~~~~~ 434 (495)
++++|.++++++.+++++.+|++.|.+++++++||+|++|+++|+||.+|+++ +...+. ....++.+
T Consensus 9 v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~-----~~~~~v~~------- 76 (138)
T 2yzi_A 9 IKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGL-----PYDIPVER------- 76 (138)
T ss_dssp GGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCC-----CTTSBGGG-------
T ss_pred HHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhcCC-----cccCCHHH-------
Confidence 44558889999999999999999999999999999998899999999999974 433221 12345555
Q ss_pred CCCCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHhh
Q 011043 435 SYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 494 (495)
Q Consensus 435 ~~~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l~ 494 (495)
+|.+++.++.+++++.+|++.|.+++++++ |+|+ +|+++|+||..||++++.
T Consensus 77 ------~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~-~g~~~Giit~~dil~~~~ 128 (138)
T 2yzi_A 77 ------IMTRNLITANVNTPLGEVLRKMAEHRIKHI-LIEE-EGKIVGIFTLSDLLEASR 128 (138)
T ss_dssp ------TCBCSCCEEETTSBHHHHHHHHHHHTCSEE-EEEE-TTEEEEEEEHHHHHHHHH
T ss_pred ------HhhCCCeEECCCCcHHHHHHHHHhcCCCEE-EECC-CCCEEEEEEHHHHHHHHH
Confidence 457789999999999999999999999999 9994 799999999999999875
No 41
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Probab=99.67 E-value=3e-16 Score=134.82 Aligned_cols=119 Identities=15% Similarity=0.242 Sum_probs=102.8
Q ss_pred cCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCC
Q 011043 356 IGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDS 435 (495)
Q Consensus 356 v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~ 435 (495)
++++|.+++.++.+++++.+|++.|.+++.+++||+| +|+++|++|.+|+++....+.. .+.++.+
T Consensus 6 v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~Givt~~dl~~~~~~~~~-----~~~~v~~-------- 71 (133)
T 2ef7_A 6 VKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD-GNKPVGIITERDIVKAIGKGKS-----LETKAEE-------- 71 (133)
T ss_dssp GGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTTCC-----TTCBGGG--------
T ss_pred HHHhccCCCEEECCCCcHHHHHHHHHhcCCCEEEEEE-CCEEEEEEcHHHHHHHHhcCCC-----cccCHHH--------
Confidence 4555888899999999999999999999999999999 8999999999999886654311 1245555
Q ss_pred CCCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHhh
Q 011043 436 YSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 494 (495)
Q Consensus 436 ~~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l~ 494 (495)
+|.+++.++.+++++.+|++.|.+++.+++||+|+ +|+++|+||..||++++.
T Consensus 72 -----~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~g~~~Giit~~dll~~~~ 124 (133)
T 2ef7_A 72 -----FMTASLITIREDSPITGALALMRQFNIRHLPVVDD-KGNLKGIISIRDITRAID 124 (133)
T ss_dssp -----TSEECCCCEETTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHH
T ss_pred -----HcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEECC-CCeEEEEEEHHHHHHHHH
Confidence 44668899999999999999999999999999994 799999999999998874
No 42
>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}
Probab=99.66 E-value=4.8e-16 Score=138.45 Aligned_cols=129 Identities=15% Similarity=0.216 Sum_probs=102.6
Q ss_pred CCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcC--CCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCC
Q 011043 357 GEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDD--NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQD 434 (495)
Q Consensus 357 ~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~--~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~ 434 (495)
+++|.++++++.+++++.+|++.|.+++++++||+|+ +|+++|+||.+|++................++.+++.....
T Consensus 16 ~dim~~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~v~~~m~~~~~ 95 (164)
T 2pfi_A 16 EHFMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPSRAPGHQQCLQDILARGCP 95 (164)
T ss_dssp HHHCBCCCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHC-------CCCCBHHHHHHTTCC
T ss_pred HHHcCCCCeEECCCCcHHHHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHHhhccccCCcccchhhhhhccccc
Confidence 3448888999999999999999999999999999996 79999999999999866443211111224578887743210
Q ss_pred CCCCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHhh
Q 011043 435 SYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 494 (495)
Q Consensus 435 ~~~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l~ 494 (495)
....+.+|.+++++.+|++.|.+++++++||+| +|+++|+||..||++++.
T Consensus 96 -------~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd--~g~l~Giit~~dil~~~~ 146 (164)
T 2pfi_A 96 -------TEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTS--RGRAVGCVSWVEMKKAIS 146 (164)
T ss_dssp -------CBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEE--TTEEEEEEEHHHHHHHHH
T ss_pred -------ccCCceEECCCCcHHHHHHHHHHhCCCEEEEEE--CCEEEEEEEHHHHHHHHH
Confidence 011278899999999999999999999999999 499999999999999874
No 43
>3ctu_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.81A {Streptococcus pneumoniae TIGR4} PDB: 3k6e_A
Probab=99.66 E-value=1.5e-16 Score=140.77 Aligned_cols=119 Identities=21% Similarity=0.309 Sum_probs=98.8
Q ss_pred CC--CCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCCC
Q 011043 360 NR--RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYS 437 (495)
Q Consensus 360 m~--~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~ 437 (495)
|. ++++++.+++++.+|++.|.+++++++||+|++|+++|+||.+|+++......+....+...++.+
T Consensus 21 m~p~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~v~~---------- 90 (156)
T 3ctu_A 21 LTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQMEHDLSQEIMADTDIVH---------- 90 (156)
T ss_dssp EEEGGGCCCEETTSBHHHHHHHHTTCSSSEEEEECC-CBEEEEEEHHHHHHHHHHHTCCHHHHTTSBGGG----------
T ss_pred cCcccCceEECCCCCHHHHHHHHHHCCCceEeEECCCCEEEEEEcHHHHHHHHHhccccccccccCcHHH----------
Confidence 76 678999999999999999999999999999999999999999999987654322111111345555
Q ss_pred CccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHhh
Q 011043 438 PYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 494 (495)
Q Consensus 438 ~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l~ 494 (495)
+|.+++.++.+++++.+|++.|.+++ ++||||+ +|+++|+||..||++++.
T Consensus 91 ---~m~~~~~~v~~~~~l~~a~~~~~~~~--~lpVvd~-~g~~~Giit~~dil~~l~ 141 (156)
T 3ctu_A 91 ---MTKTDVAVVSPDFTITEVLHKLVDES--FLPVVDA-EGIFQGIITRKSILKAVN 141 (156)
T ss_dssp ---GCBCSCCCBCSSCCHHHHHHHTTTSS--EEEEECT-TSBEEEEEETTHHHHHHH
T ss_pred ---hccCCceeeCCCCcHHHHHHHHHHcC--eEEEEcC-CCeEEEEEEHHHHHHHHH
Confidence 45778999999999999999999987 6999994 799999999999999874
No 44
>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}
Probab=99.66 E-value=1.9e-16 Score=141.65 Aligned_cols=119 Identities=18% Similarity=0.329 Sum_probs=102.2
Q ss_pred CCCCC---CceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCC
Q 011043 358 EPNRR---PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQD 434 (495)
Q Consensus 358 ~~m~~---~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~ 434 (495)
++|.+ +++++.+++++.+|++.|.+++++++||+|++|+++|+||.+|+++.+..... .....++.+
T Consensus 28 dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~---~~~~~~v~~------- 97 (165)
T 3fhm_A 28 DLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVKAVAGQGA---ASLQQSVSV------- 97 (165)
T ss_dssp HHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHGG---GGGTSBGGG-------
T ss_pred HHhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHHhcCC---ccccCCHHH-------
Confidence 33764 68999999999999999999999999999999999999999999986654321 012355665
Q ss_pred CCCCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHhh
Q 011043 435 SYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 494 (495)
Q Consensus 435 ~~~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l~ 494 (495)
+|.+++++|.+++++.+|++.|.+++++++||+| + |+++|+||..||++++.
T Consensus 98 ------~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~-g~~~Giit~~dil~~~~ 149 (165)
T 3fhm_A 98 ------AMTKNVVRCQHNSTTDQLMEIMTGGRFRHVPVEE-N-GRLAGIISIGDVVKARI 149 (165)
T ss_dssp ------TSBSSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHTT
T ss_pred ------HhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEE-C-CEEEEEEEHHHHHHHHH
Confidence 4577899999999999999999999999999999 4 99999999999999875
No 45
>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*
Probab=99.66 E-value=1.3e-15 Score=145.31 Aligned_cols=200 Identities=12% Similarity=0.104 Sum_probs=131.5
Q ss_pred CCcccCCCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCC-----CCCc--
Q 011043 266 HGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCS-----SSLP-- 338 (495)
Q Consensus 266 ~g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~-----~~~~-- 338 (495)
++++|.++++++.+++++.+|+++|.+++++++||+ +++| +++|++|..|+++++........ ....
T Consensus 9 v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVv---d~~~---~l~Giit~~di~~~~~~~~~~~~~~~~~~~~~~v 82 (245)
T 3l2b_A 9 VEDLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVA---DGNN---HLLGMLSTSNITATYMDIWDSNILAKSATSLDNI 82 (245)
T ss_dssp GGGSCCBCCCCBCTTCBHHHHHHHHHHTTCSEEEEE---CTTC---BEEEEEEHHHHHHHHHCCCCTTHHHHTTCCHHHH
T ss_pred HHHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEE---cCCC---EEEEEEEHHHHHHHHHHhhhhhhhhhccCCHHHH
Confidence 456899999999999999999999999999999999 3557 89999999999998754321100 0000
Q ss_pred -------cc------ccccccccCccc-ccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCC----------
Q 011043 339 -------IL------KLPICAIPVGTW-VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN---------- 394 (495)
Q Consensus 339 -------~l------~~~v~~l~i~~~-~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~---------- 394 (495)
.+ ....+.+.++.. ...+.+.+....+.+-.+ -.++...+.+.+++++++++..
T Consensus 83 ~~~l~~~~l~~~~~~~~~~g~~~i~a~~~~~~~~~~~~~~ivIvgd--r~~~~~~~i~~~~~~liit~~~~~~~~v~~~a 160 (245)
T 3l2b_A 83 LDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAIAGD--RAEIQAELIELKVSLLIVTGGHTPSKEIIELA 160 (245)
T ss_dssp HHHTTCEEEECCTTCCCCCSCEEECCSCGGGGGGTCCTTCEEEECS--CHHHHHHHHHTTCSEEEECTTCCCCHHHHHHH
T ss_pred HHHhCCEEEeccCCcceeeeeEEEEeCChHHHHhcCCCCCEEEECC--CHHHHHHHHHcCCCEEEECCCCCCCHHHHHHH
Confidence 00 000000101110 011122233333333333 4788888899999999888531
Q ss_pred --CcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCCCCccccC-CcceEecCCCCHHHHHHHHHcCCCcEEE
Q 011043 395 --DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRS-QRCQMCLPSDTLHKVMERLANPGVRRLV 471 (495)
Q Consensus 395 --g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~m~-~~~~~v~~~~tL~~a~~~m~~~~~~~l~ 471 (495)
+.+..+.+..|......... ...++.++ |+ +++.++++++++.+|+++|.+++++++|
T Consensus 161 ~~~~~~~i~t~~d~~~~~~~~~------~~~~v~~i-------------m~~~~~~~~~~~~~~~~~~~~m~~~~~~~~p 221 (245)
T 3l2b_A 161 KKNNITVITTPHDSFTASRLIV------QSLPVDYV-------------MTKDNLVAVSTDDLVEDVKVTMSETRYSNYP 221 (245)
T ss_dssp HHHTCEEEECSSCHHHHHHHGG------GGSBHHHH-------------SBCTTCCCEETTSBHHHHHHHHHHHCCSEEE
T ss_pred HHcCCeEEEeCCChHHHHHHHh------cCCceeeE-------------ecCCccEEECCCCcHHHHHHHHHhcCCceEE
Confidence 23445566666554332211 13556664 46 7899999999999999999999999999
Q ss_pred EEeCCCCeEEEEEehHHHHHHh
Q 011043 472 IVEAGSKRVEGIVSLSDIFKFL 493 (495)
Q Consensus 472 VVd~~~~~lvGiIs~~DIl~~l 493 (495)
|||+ +|+++|+||+.||+++.
T Consensus 222 Vvd~-~~~~~Giit~~dll~~~ 242 (245)
T 3l2b_A 222 VIDE-NNKVVGSIARFHLISTH 242 (245)
T ss_dssp EECT-TCBEEEEEECC------
T ss_pred EEcC-CCeEEEEEEHHHhhchh
Confidence 9994 79999999999999864
No 46
>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1
Probab=99.65 E-value=1e-15 Score=135.69 Aligned_cols=124 Identities=8% Similarity=0.131 Sum_probs=102.7
Q ss_pred ccCCCCCCCceeecCCCCHHHHHHHHHHCCCCE-EEEEcCCCcEEEEEeHHHHHHHHhhc---ccc--------cCcccc
Q 011043 355 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSS-IPIVDDNDSLLDIYCRSDITALAKDK---AYA--------HINLSE 422 (495)
Q Consensus 355 ~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~-lpVvd~~g~lvGivs~~Dl~~~~~~~---~~~--------~l~~~~ 422 (495)
.++++|.++++++.+++++.+|++.|.++++++ +||+|++ +++|+||..|+++..... ... ......
T Consensus 17 ~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~~-~~vGivt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (157)
T 1o50_A 17 DVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDN-KLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSMKRLIA 95 (157)
T ss_dssp HHTTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETT-EEEEEEEHHHHHHHHHHHHHCCCC-------CCCCCSS
T ss_pred cHhhcccCCCceECCCCCHHHHHHHHHhCCCCccEEEEECC-EEEEEEEHHHHHHHHhhhHHhhhccHHHHHHHHHHHcC
Confidence 345669999999999999999999999999999 9999977 999999999999764311 000 001123
Q ss_pred cCHHHHHHcCCCCCCCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHhh
Q 011043 423 MTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 494 (495)
Q Consensus 423 ~~v~~~l~~~~~~~~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l~ 494 (495)
.++.+ +|.+ ++++.+++++.+|++.|.+++++++||+|+ +|+++|+||..||++++.
T Consensus 96 ~~v~~-------------im~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~~vGiit~~dll~~l~ 152 (157)
T 1o50_A 96 KNASE-------------IMLD-PVYVHMDTPLEEALKLMIDNNIQEMPVVDE-KGEIVGDLNSLEILLALW 152 (157)
T ss_dssp CBHHH-------------HCBC-CCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHH
T ss_pred CcHHH-------------HcCC-CeEECCCCCHHHHHHHHHHCCCcEEEEEcC-CCEEEEEEEHHHHHHHHH
Confidence 45555 4577 899999999999999999999999999994 699999999999999874
No 47
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}
Probab=99.65 E-value=1.7e-15 Score=140.56 Aligned_cols=160 Identities=16% Similarity=0.169 Sum_probs=125.8
Q ss_pred eehHHHHHHHHHHhcCCCCCChhhHhhhhHHHHHHHHhhhccccCCCCcccCCCceeeCCCCcHHHHHHHHHhC---CCc
Q 011043 220 LSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHN---EVA 296 (495)
Q Consensus 220 lt~~Dii~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~~a~~~m~~~---~i~ 296 (495)
++..|.++++..+. ......-+..+.-.........+.++...+|++|.++++++.+++|+.+|++.|.++ +++
T Consensus 13 m~~dd~~dll~~l~---~~~~~~~l~~l~~~e~~~i~~~l~~~~~~v~~iM~~~~~~v~~~~tv~eal~~~~~~~~~~~~ 89 (205)
T 3kxr_A 13 LSPEDLIEWSDYLP---ESFTDRALAQMGERQRQRFELYDQYSENEIGRYTDHQMLVLSDKATVAQAQRFFRRIELDCND 89 (205)
T ss_dssp SCHHHHHHTTTTSC---HHHHHHHHHHSCHHHHHHHHHHHHSCTTCGGGGCBCCCCEEETTCBHHHHHHHHHHCCCTTCC
T ss_pred CCHHHHHHHHHhCC---HHHHHHHHHcCCHHHHHHHHHHhCCCcchHHhhccCceEEECCCCcHHHHHHHHHhhCccCee
Confidence 45667776663321 111122333334455555666677889999999999999999999999999999987 899
Q ss_pred eeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccccCcccccccCCCCCCCceeecCCCCHHHH
Q 011043 297 TVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAA 376 (495)
Q Consensus 297 ~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~~~m~~~~~~v~~~~sl~~a 376 (495)
.+||+ ++++ +++|++|.+|++.. ....+++++ |.++++++.+++++.+|
T Consensus 90 ~~~Vv---d~~~---~lvGivt~~dll~~-------------~~~~~v~~i------------m~~~~~~v~~~~~l~~a 138 (205)
T 3kxr_A 90 NLFIV---DEAD---KYLGTVRRYDIFKH-------------EPHEPLISL------------LSEDSRALTANTTLLDA 138 (205)
T ss_dssp EEEEE---CTTC---BEEEEEEHHHHTTS-------------CTTSBGGGG------------CCSSCCCEETTSCHHHH
T ss_pred EEEEE---cCCC---eEEEEEEHHHHHhC-------------CCcchHHHH------------hcCCCeEECCCCCHHHH
Confidence 99999 3567 89999999998631 012344444 88889999999999999
Q ss_pred HHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhc
Q 011043 377 LNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK 413 (495)
Q Consensus 377 ~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~ 413 (495)
++.|.+++++.+||||++|+++|+||..|++..+...
T Consensus 139 ~~~m~~~~~~~lpVVD~~g~lvGiIT~~Dil~~i~~e 175 (205)
T 3kxr_A 139 AEAIEHSREIELPVIDDAGELIGRVTLRAATALVREH 175 (205)
T ss_dssp HHHHHTSSCSEEEEECTTSBEEEEEEHHHHHHHHHHH
T ss_pred HHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHHHHH
Confidence 9999999999999999999999999999999877654
No 48
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0
Probab=99.65 E-value=5.5e-16 Score=136.18 Aligned_cols=119 Identities=23% Similarity=0.240 Sum_probs=99.1
Q ss_pred CC--CCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhccccc-CcccccCHHHHHHcCCCCC
Q 011043 360 NR--RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAH-INLSEMTIHQALQLGQDSY 436 (495)
Q Consensus 360 m~--~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~-l~~~~~~v~~~l~~~~~~~ 436 (495)
|. .+++++.+++++.+|++.|.+++++++||+|++|+++|+||.+|+++......... ......++.+
T Consensus 21 m~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~v~~--------- 91 (150)
T 3lqn_A 21 MISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILDGILGLERIEFERLEEMKVEQ--------- 91 (150)
T ss_dssp SEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHTBCSSSBCGGGGGGCBGGG---------
T ss_pred ccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECCCCCEEEEEEHHHHHHHHHhhcccchhHHhcCCHHH---------
Confidence 77 45899999999999999999999999999999999999999999998764321100 0112344554
Q ss_pred CCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHhh
Q 011043 437 SPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 494 (495)
Q Consensus 437 ~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l~ 494 (495)
+|.+++.++.+++++.+|++.|.++++ +||||+ +|+++|+||..||++++.
T Consensus 92 ----~m~~~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~-~g~~~Giit~~dil~~l~ 142 (150)
T 3lqn_A 92 ----VMKQDIPVLKLEDSFAKALEMTIDHPF--ICAVNE-DGYFEGILTRRAILKLLN 142 (150)
T ss_dssp ----TCBSSCCEEETTCBHHHHHHHHHHCSE--EEEECT-TCBEEEEEEHHHHHHHHH
T ss_pred ----HhcCCCceeCCCCCHHHHHHHHHhCCE--EEEECC-CCcEEEEEEHHHHHHHHH
Confidence 557789999999999999999999987 999994 799999999999999874
No 49
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}
Probab=99.64 E-value=4.4e-16 Score=140.91 Aligned_cols=124 Identities=25% Similarity=0.406 Sum_probs=99.6
Q ss_pred CCCCCC--CceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcc--------cccC--------
Q 011043 357 GEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKA--------YAHI-------- 418 (495)
Q Consensus 357 ~~~m~~--~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~--------~~~l-------- 418 (495)
+++|.+ +++++.+++++.+|+++|.+++++++||+|++|+++|+||.+||+++..... +...
T Consensus 7 ~dim~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (180)
T 3sl7_A 7 GDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDSTWKTFN 86 (180)
T ss_dssp HHHSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHTCC-------------------CCCSHH
T ss_pred HHhcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECCCCeEEEEEEHHHHHhhhhhccccCCcccccccccchhhhhH
Confidence 344777 7899999999999999999999999999999999999999999985321000 0000
Q ss_pred -------cccccCHHHHHHcCCCCCCCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHH
Q 011043 419 -------NLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 491 (495)
Q Consensus 419 -------~~~~~~v~~~l~~~~~~~~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~ 491 (495)
.....++.+ +|.+++++|.+++++.+|+++|.+++++++||+|+ +|+++|+||..||++
T Consensus 87 ~~~~~~~~~~~~~v~~-------------~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~~vGiit~~dil~ 152 (180)
T 3sl7_A 87 ELQKLISKTYGKVVGD-------------LMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDA-DGKLIGILTRGNVVR 152 (180)
T ss_dssp HHHHHHHTTTTCBHHH-------------HSEESCCCEETTSBHHHHHHHHTTSTTCEEEEECT-TCBEEEEEEHHHHHH
T ss_pred HHHHHHhccccccHHH-------------HhCCCceEeCCCCcHHHHHHHHHHcCCCEEEEECC-CCeEEEEEEHHHHHH
Confidence 011233444 55778899999999999999999999999999994 799999999999999
Q ss_pred Hhh
Q 011043 492 FLL 494 (495)
Q Consensus 492 ~l~ 494 (495)
++.
T Consensus 153 ~~~ 155 (180)
T 3sl7_A 153 AAL 155 (180)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 50
>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1
Probab=99.64 E-value=1.1e-15 Score=142.92 Aligned_cols=158 Identities=12% Similarity=0.161 Sum_probs=101.7
Q ss_pred CCCcccCCCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCccccccc
Q 011043 265 SHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPI 344 (495)
Q Consensus 265 ~~g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v 344 (495)
.++.+|.++++++.+++++.+|+++|.+++++.+||+ ++++ +++|++|..|+++.+. ..++
T Consensus 14 ~~~~~~~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVv---d~~~---~l~Givt~~dl~~~~~-------------~~~v 74 (213)
T 1vr9_A 14 KVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVK---DREG---HFRGVVNKEDLLDLDL-------------DSSV 74 (213)
T ss_dssp BGGGGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEE---CTTS---BEEEEEEGGGGTTSCT-------------TSBS
T ss_pred CHHHhhcCCCeEECCCCcHHHHHHHHHHCCCCEEEEE---cCCC---EEEEEEEHHHHHhhcC-------------CCcH
Confidence 3466899999999999999999999999999999999 3456 8999999999864221 2334
Q ss_pred ccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccC
Q 011043 345 CAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMT 424 (495)
Q Consensus 345 ~~l~i~~~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~ 424 (495)
+++ |.++++++.+++++.+|+++|.+++++++||+|++|+++|+||.+|+++...... .
T Consensus 75 ~~i------------m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~Dil~~~~~~~---------~ 133 (213)
T 1vr9_A 75 FNK------------VSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEAL---------A 133 (213)
T ss_dssp GGG------------CBCTTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHHSC---------C
T ss_pred HHH------------ccCCCEEECCCCcHHHHHHHHHHhCCCEEEEEcCCCEEEEEEEHHHHHHHHHHHh---------c
Confidence 444 8888999999999999999999999999999998899999999999998654321 1
Q ss_pred HHHHHHcCCCCCCCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEe
Q 011043 425 IHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVE 474 (495)
Q Consensus 425 v~~~l~~~~~~~~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd 474 (495)
..+.... + .+.+.....++.+|.+.|.+++++.++|++
T Consensus 134 ~~~~~~~---------l---~~~~~~~~~~l~~~~~~l~~~~~~~l~V~~ 171 (213)
T 1vr9_A 134 MDVPGIR---------F---SVLLEDKPGELRKVVDALALSNINILSVIT 171 (213)
T ss_dssp --------------------------------------------------
T ss_pred CCCCcEE---------E---EEEeCCCCccHHHHHHHHHHCCCcEEEEEE
Confidence 1111100 0 111123334599999999999999999885
No 51
>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}
Probab=99.64 E-value=1.6e-15 Score=134.18 Aligned_cols=123 Identities=17% Similarity=0.206 Sum_probs=101.1
Q ss_pred cCCCCCC--CceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcc-cccCcccccCHHHHHHcC
Q 011043 356 IGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKA-YAHINLSEMTIHQALQLG 432 (495)
Q Consensus 356 v~~~m~~--~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~-~~~l~~~~~~v~~~l~~~ 432 (495)
++++|.+ +++++.+++++.+|++.|.+++++++||+|++|+++|+||.+|+++...... +....+...++.+
T Consensus 13 v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~v~~----- 87 (157)
T 2emq_A 13 VKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMMMDAILGLERIEFERLETMKVEE----- 87 (157)
T ss_dssp STTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTTCCEEEEEEHHHHHHHSBCSSSBCGGGGGTCBGGG-----
T ss_pred HHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcCCCCEEEEeeHHHHHHHHhcccccchHHhcCCcHHH-----
Confidence 4455876 7899999999999999999999999999998899999999999998654321 1000112344444
Q ss_pred CCCCCCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHhh
Q 011043 433 QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 494 (495)
Q Consensus 433 ~~~~~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l~ 494 (495)
+|.+++.++.+++++.+|++.|.++++ +||||+ +|+++|+||..||++++.
T Consensus 88 --------~m~~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~-~g~~~Giit~~dil~~~~ 138 (157)
T 2emq_A 88 --------VMNRNIPRLRLDDSLMKAVGLIVNHPF--VCVEND-DGYFAGIFTRREVLKQLN 138 (157)
T ss_dssp --------TCBCCCCEEETTSBHHHHHHHHHHSSE--EEEECS-SSSEEEEEEHHHHHHHHH
T ss_pred --------HhCCCCceecCCCcHHHHHHHHhhCCE--EEEEcC-CCeEEEEEEHHHHHHHHH
Confidence 557789999999999999999999987 999994 699999999999999874
No 52
>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1
Probab=99.64 E-value=5.7e-16 Score=133.53 Aligned_cols=119 Identities=13% Similarity=0.270 Sum_probs=100.2
Q ss_pred CCCC---CCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCC
Q 011043 358 EPNR---RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQD 434 (495)
Q Consensus 358 ~~m~---~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~ 434 (495)
++|. +++.++.+++++.+|++.|.+++++++||+| +|+++|++|.+|+++.+..... .....++.+
T Consensus 10 ~im~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~Givt~~dl~~~~~~~~~---~~~~~~v~~------- 78 (135)
T 2rc3_A 10 HLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMK-DEKLVGILTERDFSRKSYLLDK---PVKDTQVKE------- 78 (135)
T ss_dssp HHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHGGGSSS---CGGGSBGGG-------
T ss_pred HHHhcCCCCcEEECCCCcHHHHHHHHHhcCCCEEEEEE-CCEEEEEEehHHHHHHHHHcCC---CcccCCHHH-------
Confidence 3477 7889999999999999999999999999998 8999999999999863322111 112345555
Q ss_pred CCCCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 011043 435 SYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 495 (495)
Q Consensus 435 ~~~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l~~ 495 (495)
+|.+++.++.+++++.+|++.|.+++++++||+| +|+++|+||..||++++.+
T Consensus 79 ------~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd--~g~~~Giit~~dll~~~~~ 131 (135)
T 2rc3_A 79 ------IMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD--DGKVIGLLSIGDLVKDAIS 131 (135)
T ss_dssp ------TSBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHHC
T ss_pred ------hccCCCeEECCCCcHHHHHHHHHHhCCCEEEEEe--CCEEEEEEEHHHHHHHHHh
Confidence 4577899999999999999999999999999999 4899999999999998753
No 53
>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A
Probab=99.64 E-value=1.1e-15 Score=139.38 Aligned_cols=123 Identities=16% Similarity=0.266 Sum_probs=103.8
Q ss_pred ccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCC
Q 011043 355 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQD 434 (495)
Q Consensus 355 ~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~ 434 (495)
.++++|.++++++.+++++.+|+++|.+++++++||+|++|+++|++|.+||+........ .....++.+
T Consensus 10 ~v~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~g~~vGivt~~dl~~~~~~~~~---~~~~~~v~~------- 79 (184)
T 1pvm_A 10 RVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNK---KPDEVPIRL------- 79 (184)
T ss_dssp BGGGTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGGCC---CGGGSBGGG-------
T ss_pred CHHHhcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhccc---CcccCCHHH-------
Confidence 3455588899999999999999999999999999999988999999999999986543110 012345555
Q ss_pred CCCCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHhh
Q 011043 435 SYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 494 (495)
Q Consensus 435 ~~~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l~ 494 (495)
+|.+++.++.+++++.+|+++|.+++.+++||+|+ +|+++|+||..||++++.
T Consensus 80 ------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~~~Givt~~dll~~~~ 132 (184)
T 1pvm_A 80 ------VMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDD-PGRVVGIVTLTDLSRYLS 132 (184)
T ss_dssp ------TSBSSCCEEETTCBHHHHHHHHHHHTCSEEEEECT-TCCEEEEEEHHHHTTTSC
T ss_pred ------HhCCCCcEECCCCCHHHHHHHHHHcCCcEEEEEcC-CCeEEEEEEHHHHHHHHH
Confidence 45778999999999999999999999999999994 699999999999998763
No 54
>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}
Probab=99.63 E-value=2.7e-15 Score=135.24 Aligned_cols=122 Identities=13% Similarity=0.134 Sum_probs=103.4
Q ss_pred cCCCCcccC--CCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCccc
Q 011043 263 IDSHGKAFP--RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPIL 340 (495)
Q Consensus 263 ~~~~g~~~~--~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l 340 (495)
...++++|. .+++++.+++++.+|+++|.+++++++||++ ++.+ +++|++|..|+++.+....
T Consensus 41 ~~~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd--~~~~---~lvGivt~~dl~~~~~~~~---------- 105 (172)
T 3lhh_A 41 ERTISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCR--NNVD---DMVGIISAKQLLSESIAGE---------- 105 (172)
T ss_dssp --CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEES--SSTT---SEEEEEEHHHHHHHHHTTC----------
T ss_pred CCCHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEe--CCCC---eEEEEEEHHHHHHHHhhcC----------
Confidence 345678898 7889999999999999999999999999993 2226 8999999999998765320
Q ss_pred ccccccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 011043 341 KLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 412 (495)
Q Consensus 341 ~~~v~~l~i~~~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~ 412 (495)
..+++++ | ++++++.+++++.+|+++|.+++++.+||+|++|+++|+||+.|+++.+..
T Consensus 106 ~~~v~~i------------m-~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dil~~l~~ 164 (172)
T 3lhh_A 106 RLELVDL------------V-KNCNFVPNSLSGMELLEHFRTTGSQMVFVVDEYGDLKGLVTLQDMMDALTG 164 (172)
T ss_dssp CCCGGGG------------C-BCCEEEETTCCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHT
T ss_pred cccHHHH------------h-cCCeEeCCCCCHHHHHHHHHHcCCeEEEEEeCCCCEEEEeeHHHHHHHHhC
Confidence 2344444 8 789999999999999999999999999999988999999999999987654
No 55
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*
Probab=99.63 E-value=2e-15 Score=127.50 Aligned_cols=116 Identities=21% Similarity=0.356 Sum_probs=101.1
Q ss_pred cccCCCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccc
Q 011043 268 KAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAI 347 (495)
Q Consensus 268 ~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l 347 (495)
++|.++++++.+++++.+|++.|.+++.+.+||+ ++++ +++|+++..|+++++... ..++.++
T Consensus 5 ~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vv---d~~~---~~~G~vt~~dl~~~~~~~-----------~~~v~~~ 67 (122)
T 3kpb_A 5 DILSKPPITAHSNISIMEAAKILIKHNINHLPIV---DEHG---KLVGIITSWDIAKALAQN-----------KKTIEEI 67 (122)
T ss_dssp HHCCSCCCCEETTSBHHHHHHHHHHHTCSCEEEE---CTTS---BEEEEECHHHHHHHHHTT-----------CCBGGGT
T ss_pred HhhCCCCEEeCCCCcHHHHHHHHHHcCCCeEEEE---CCCC---CEEEEEEHHHHHHHHHhc-----------ccCHHHH
Confidence 4688899999999999999999999999999999 4567 899999999999876542 1134444
Q ss_pred cCcccccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 011043 348 PVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 412 (495)
Q Consensus 348 ~i~~~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~ 412 (495)
|.+++.++.+++++.+|++.|.+++.+++||+|++|+++|++|.+|+++.+..
T Consensus 68 ------------~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Givt~~dl~~~l~~ 120 (122)
T 3kpb_A 68 ------------MTRNVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISRLFGG 120 (122)
T ss_dssp ------------SBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHC-
T ss_pred ------------hcCCCeEECCCCCHHHHHHHHHHhCCCeEEEECCCCCEEEEEeHHHHHHHhhc
Confidence 77889999999999999999999999999999988999999999999987543
No 56
>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1
Probab=99.63 E-value=9.9e-16 Score=136.04 Aligned_cols=119 Identities=18% Similarity=0.199 Sum_probs=100.3
Q ss_pred CCC--CceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcc-cccCcccccCHHHHHHcCCCCC
Q 011043 360 NRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKA-YAHINLSEMTIHQALQLGQDSY 436 (495)
Q Consensus 360 m~~--~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~-~~~l~~~~~~v~~~l~~~~~~~ 436 (495)
|.+ +++++.+++++.+|++.|.+++++++||+|++|+++|+||.+|++....... +........++.+++
T Consensus 20 m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~v~~~m------- 92 (159)
T 1yav_A 20 MIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLERIEFEKLDQITVEEVM------- 92 (159)
T ss_dssp SEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCSSSBCGGGTTTSBHHHHS-------
T ss_pred hCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECCCCCEEEEeEHHHHHHHhhhhcccchhhhccCCHHHhc-------
Confidence 776 7899999999999999999999999999998899999999999998764321 100112345677654
Q ss_pred CCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHhh
Q 011043 437 SPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 494 (495)
Q Consensus 437 ~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l~ 494 (495)
.+++.++.+++++.+|++.|.+.++ +||+|+ +|+++|+||..||++++.
T Consensus 93 ------~~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~-~g~~vGiit~~dil~~~~ 141 (159)
T 1yav_A 93 ------LTDIPRLHINDPIMKGFGMVINNGF--VCVEND-EQVFEGIFTRRVVLKELN 141 (159)
T ss_dssp ------BCSCCEEETTSBHHHHHHHTTTCSE--EEEECT-TCBEEEEEEHHHHHHHHH
T ss_pred ------CCCCceEcCCCCHHHHHHHHHhCCE--EEEEeC-CCeEEEEEEHHHHHHHHH
Confidence 6789999999999999999999987 999994 799999999999999874
No 57
>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1
Probab=99.63 E-value=5.2e-15 Score=141.09 Aligned_cols=139 Identities=17% Similarity=0.237 Sum_probs=104.2
Q ss_pred ccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCC--CcEEEEEeHHHHHHHHhhccc--ccC------------
Q 011043 355 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN--DSLLDIYCRSDITALAKDKAY--AHI------------ 418 (495)
Q Consensus 355 ~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~--g~lvGivs~~Dl~~~~~~~~~--~~l------------ 418 (495)
.++++|.++++++.+++++.+|.++|.+++++++||||++ ++++|+||++||++++..... ...
T Consensus 14 ~v~diMt~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~ 93 (250)
T 2d4z_A 14 QVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPAAAAEADEEGR 93 (250)
T ss_dssp BTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCCCCBCCC--
T ss_pred ChHHhcCCCCeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHHHhhhhhhhhhhhhhccccccc
Confidence 4667799999999999999999999999999999999863 689999999999976543210 000
Q ss_pred ----------------cccc---------------------------------------------------------cCH
Q 011043 419 ----------------NLSE---------------------------------------------------------MTI 425 (495)
Q Consensus 419 ----------------~~~~---------------------------------------------------------~~v 425 (495)
.+.+ ++.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 173 (250)
T 2d4z_A 94 NGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQVASRFEEMLTL 173 (250)
T ss_dssp -------------------------------------------------------------------------CCSCCBH
T ss_pred ccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccccccccccccccccccccCcccccccCh
Confidence 0000 000
Q ss_pred HHH-----HHcCCCCCCCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 011043 426 HQA-----LQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 495 (495)
Q Consensus 426 ~~~-----l~~~~~~~~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l~~ 495 (495)
.+. .......+....+|.+.++++.++++|.+|..+|...|++++||++ .|+|+||||+.||++++.+
T Consensus 174 ~~~~~~~~~~l~~~Vdl~~~~md~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~--~GrLVGIVTrkDl~kai~~ 246 (250)
T 2d4z_A 174 EEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS--MGKLVGVVALAEIQAAIEG 246 (250)
T ss_dssp HHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHHC
T ss_pred hhhhhHHHHhcCceeccccccccCCCeEECCCCcHHHHHHHHHHhCCeEEEEEE--CCEEEEEEEHHHHHHHHHH
Confidence 000 0000000001125888999999999999999999999999999999 5999999999999999864
No 58
>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}
Probab=99.63 E-value=3.7e-15 Score=130.63 Aligned_cols=121 Identities=12% Similarity=0.151 Sum_probs=103.2
Q ss_pred CCCCcccCC--CceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccc
Q 011043 264 DSHGKAFPR--PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILK 341 (495)
Q Consensus 264 ~~~g~~~~~--~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~ 341 (495)
..++++|.+ +++++.+++++.+|+++|.+++++++||++ ++.+ +++|++|..|+++.+.... .
T Consensus 23 ~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd--~~~~---~lvGivt~~dl~~~~~~~~----------~ 87 (148)
T 3lv9_A 23 KKIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCR--KNKD---DILGFVHIRDLYNQKINEN----------K 87 (148)
T ss_dssp CBGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEES--SSTT---SEEEEEEHHHHHHHHHHHS----------C
T ss_pred CCHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEc--CCCC---cEEEEEEHHHHHHHHhcCC----------C
Confidence 345678887 899999999999999999999999999993 2226 8999999999998775431 2
Q ss_pred cccccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 011043 342 LPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 412 (495)
Q Consensus 342 ~~v~~l~i~~~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~ 412 (495)
.+++++ | +++.++.+++++.+|+++|.+++.+.+||+|++|+++|+||..|+++.+..
T Consensus 88 ~~v~~~------------m-~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~~ 145 (148)
T 3lv9_A 88 IELEEI------------L-RDIIYISENLTIDKALERIRKEKLQLAIVVDEYGGTSGVVTIEDILEEIVG 145 (148)
T ss_dssp CCGGGT------------C-BCCEEEETTSBHHHHHHHHHHHTCSEEEEECTTSSEEEEEEHHHHHHHHHH
T ss_pred ccHHHh------------c-CCCeEECCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhC
Confidence 334444 8 788999999999999999999999999999999999999999999986543
No 59
>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}
Probab=99.63 E-value=1.2e-15 Score=135.15 Aligned_cols=114 Identities=15% Similarity=0.327 Sum_probs=99.0
Q ss_pred CCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCCCCccc
Q 011043 362 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL 441 (495)
Q Consensus 362 ~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~ 441 (495)
++++++.+++++.+|++.|.+++++++||++ +|+++|++|.+|+++.+..... .....++.+++
T Consensus 21 ~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~---~~~~~~v~~~m------------ 84 (157)
T 4fry_A 21 RTIYTVTKNDFVYDAIKLMAEKGIGALLVVD-GDDIAGIVTERDYARKVVLQER---SSKATRVEEIM------------ 84 (157)
T ss_dssp CCCCEEETTSBHHHHHHHHHHHTCSEEEEES-SSSEEEEEEHHHHHHHSGGGTC---CSSSCBHHHHS------------
T ss_pred CCCeEECCCCcHHHHHHHHHHcCCCEEEEee-CCEEEEEEEHHHHHHHHHhccC---CccccCHHHHc------------
Confidence 5578999999999999999999999999965 8999999999999986544321 12346778754
Q ss_pred cCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHhh
Q 011043 442 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 494 (495)
Q Consensus 442 m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l~ 494 (495)
.+++.++.+++++.+|+++|.+++++++||+| +|+++|+||..||++++.
T Consensus 85 -~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd--~g~~~Giit~~dil~~l~ 134 (157)
T 4fry_A 85 -TAKVRYVEPSQSTDECMALMTEHRMRHLPVLD--GGKLIGLISIGDLVKSVI 134 (157)
T ss_dssp -BSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHH
T ss_pred -CCCCcEECCCCcHHHHHHHHHHcCCCEEEEEE--CCEEEEEEEHHHHHHHHH
Confidence 66889999999999999999999999999999 499999999999999885
No 60
>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}
Probab=99.62 E-value=1.7e-15 Score=134.35 Aligned_cols=121 Identities=16% Similarity=0.224 Sum_probs=98.6
Q ss_pred ccC--CCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCccccccccc
Q 011043 269 AFP--RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICA 346 (495)
Q Consensus 269 ~~~--~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~ 346 (495)
+|. .+++++.+++|+.+|+++|.+++++++||+ ++++ +++|++|.+|+++++....... ......++++
T Consensus 20 iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVv---d~~~---~lvGiit~~Di~~~~~~~~~~~---~~~~~~~v~~ 90 (156)
T 3k6e_A 20 FLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVV---TDEK---QFVGTIGLRDIMAYQMEHDLSQ---EIMADTDIVH 90 (156)
T ss_dssp GEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEE---CC-C---BEEEEEEHHHHHHHHHHHTCCH---HHHTTSBGGG
T ss_pred hCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEE---cCCC---cEEEEEEecchhhhhhhccccc---ccccccCHHH
Confidence 454 579999999999999999999999999999 3557 8999999999998876542110 1112334444
Q ss_pred ccCcccccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 011043 347 IPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 412 (495)
Q Consensus 347 l~i~~~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~ 412 (495)
+ |.+++.++.+++++.+|+++|.+++ .+||||++|+++|+||++||++.+..
T Consensus 91 i------------m~~~~~~v~~~~~l~~~~~~m~~~~--~lpVVd~~g~l~GiiT~~Dil~~~~~ 142 (156)
T 3k6e_A 91 M------------TKTDVAVVSPDFTITEVLHKLVDES--FLPVVDAEGIFQGIITRKSILKAVNA 142 (156)
T ss_dssp T------------CBCSCCCBCTTCCHHHHHHHTTTSS--EEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred h------------hcCCceecccccHHHHHHHHHHHcC--CeEEEecCCEEEEEEEHHHHHHHHHH
Confidence 4 8999999999999999999998766 49999999999999999999987644
No 61
>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}
Probab=99.62 E-value=9.9e-16 Score=135.77 Aligned_cols=114 Identities=11% Similarity=0.298 Sum_probs=98.2
Q ss_pred ccCCCCCC--CceeecCCCCHHHHHHHHHHCCCCEEEEEcCCC-cEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHc
Q 011043 355 KIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDND-SLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQL 431 (495)
Q Consensus 355 ~v~~~m~~--~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g-~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~ 431 (495)
+++++|.+ +++++.+++++.+|++.|.+++++++||+|+++ +++|+||.+|+++....+ ...++.++|
T Consensus 39 ~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~-------~~~~v~~im-- 109 (156)
T 3oi8_A 39 EVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYMFNP-------EQFHLKSIL-- 109 (156)
T ss_dssp BGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGSSCG-------GGCCHHHHC--
T ss_pred CHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHcC-------CcccHHHHc--
Confidence 34555875 789999999999999999999999999999874 999999999998764332 135777754
Q ss_pred CCCCCCCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHH
Q 011043 432 GQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIF 490 (495)
Q Consensus 432 ~~~~~~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl 490 (495)
. ++.++++++++.+|++.|.+++++++||+|+ +|+++|+||+.||+
T Consensus 110 -----------~-~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~-~g~~~Givt~~Dil 155 (156)
T 3oi8_A 110 -----------R-PAVFVPEGKSLTALLKEFREQRNHMAIVIDE-YGGTSGLVTFEDII 155 (156)
T ss_dssp -----------B-CCCEEETTSBHHHHHHHHHHTTCCEEEEECT-TSSEEEEEEHHHHC
T ss_pred -----------C-CCEEECCCCCHHHHHHHHHhcCCeEEEEECC-CCCEEEEEEHHHhc
Confidence 3 4889999999999999999999999999994 79999999999986
No 62
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}
Probab=99.62 E-value=2.4e-15 Score=139.57 Aligned_cols=115 Identities=19% Similarity=0.234 Sum_probs=100.8
Q ss_pred cCCCCCCCceeecCCCCHHHHHHHHHHC---CCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcC
Q 011043 356 IGEPNRRPLAMLRPSASLSAALNLLVQA---QVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLG 432 (495)
Q Consensus 356 v~~~m~~~~~~v~~~~sl~~a~~~m~~~---~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~ 432 (495)
++++|.++++++.+++++.+|++.|.+. +++.+||+|++|+++|+||.+|++... .+.++.+
T Consensus 56 v~~iM~~~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~~----------~~~~v~~----- 120 (205)
T 3kxr_A 56 IGRYTDHQMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEADKYLGTVRRYDIFKHE----------PHEPLIS----- 120 (205)
T ss_dssp GGGGCBCCCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTTCBEEEEEEHHHHTTSC----------TTSBGGG-----
T ss_pred HHhhccCceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCCCeEEEEEEHHHHHhCC----------CcchHHH-----
Confidence 4455999999999999999999999987 889999999999999999999987421 1345665
Q ss_pred CCCCCCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHhh
Q 011043 433 QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 494 (495)
Q Consensus 433 ~~~~~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l~ 494 (495)
+|.++++++++++++.+|++.|.+++++.+||||+ +|+++|+||..||++.+.
T Consensus 121 --------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~-~g~lvGiIT~~Dil~~i~ 173 (205)
T 3kxr_A 121 --------LLSEDSRALTANTTLLDAAEAIEHSREIELPVIDD-AGELIGRVTLRAATALVR 173 (205)
T ss_dssp --------GCCSSCCCEETTSCHHHHHHHHHTSSCSEEEEECT-TSBEEEEEEHHHHHHHHH
T ss_pred --------HhcCCCeEECCCCCHHHHHHHHHhcCCCEEEEEcC-CCeEEEEEEHHHHHHHHH
Confidence 45778999999999999999999999999999994 799999999999998864
No 63
>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}
Probab=99.61 E-value=2e-15 Score=128.95 Aligned_cols=120 Identities=17% Similarity=0.211 Sum_probs=101.3
Q ss_pred CCcccCCCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccc
Q 011043 266 HGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPIC 345 (495)
Q Consensus 266 ~g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~ 345 (495)
++++|.++++++.+++++.+|++.|.+++++.+||++ + + +++|++|..|+++.+.... ....+++
T Consensus 7 v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd---~-~---~~~Givt~~dl~~~~~~~~--------~~~~~v~ 71 (128)
T 3gby_A 7 FSYLAETDYPVFTLGGSTADAARRLAASGCACAPVLD---G-E---RYLGMVHLSRLLEGRKGWP--------TVKEKLG 71 (128)
T ss_dssp GGGGCBCCSCCEETTSBHHHHHHHHHHHTCSEEEEEE---T-T---EEEEEEEHHHHHTTCSSSC--------CTTCBCC
T ss_pred HHHhhcCCcceECCCCCHHHHHHHHHHCCCcEEEEEE---C-C---EEEEEEEHHHHHHHHhhCC--------cccCcHH
Confidence 4568999999999999999999999999999999993 4 7 8999999999986443210 0012333
Q ss_pred cccCcccccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 011043 346 AIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 412 (495)
Q Consensus 346 ~l~i~~~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~ 412 (495)
+ +|.+++.++.+++++.+|++.|.+++.+++||+|++|+++|+||.+|+++.+.+
T Consensus 72 ~------------~m~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~g~~~Giit~~dll~~l~~ 126 (128)
T 3gby_A 72 E------------ELLETVRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRILGFLAE 126 (128)
T ss_dssp G------------GGCBCCCCBCTTSBGGGSHHHHHHCSSSEEEEECTTCBEEEEEEHHHHHHHHHT
T ss_pred H------------HccCCCcEECCCCCHHHHHHHHHhCCCcEEEEECCCCCEEEEEEHHHHHHHHHh
Confidence 3 388889999999999999999999999999999999999999999999987643
No 64
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Probab=99.60 E-value=6.9e-15 Score=126.24 Aligned_cols=121 Identities=20% Similarity=0.311 Sum_probs=103.3
Q ss_pred CCcccCCCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccc
Q 011043 266 HGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPIC 345 (495)
Q Consensus 266 ~g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~ 345 (495)
++++|.++++++.+++++.+|++.|.+++.+.+||++ ++ +++|++|..|+++++..... ...++.
T Consensus 6 v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd----~~---~~~Givt~~dl~~~~~~~~~--------~~~~v~ 70 (133)
T 2ef7_A 6 VKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD----GN---KPVGIITERDIVKAIGKGKS--------LETKAE 70 (133)
T ss_dssp GGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEE----TT---EEEEEEEHHHHHHHHHTTCC--------TTCBGG
T ss_pred HHHhccCCCEEECCCCcHHHHHHHHHhcCCCEEEEEE----CC---EEEEEEcHHHHHHHHhcCCC--------cccCHH
Confidence 4568888999999999999999999999999999993 56 89999999999887654311 123444
Q ss_pred cccCcccccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhc
Q 011043 346 AIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK 413 (495)
Q Consensus 346 ~l~i~~~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~ 413 (495)
++ |.+++.++.+++++.+|++.|.+++.+.+||+|++|+++|+||..|+++.....
T Consensus 71 ~~------------~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~~ 126 (133)
T 2ef7_A 71 EF------------MTASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDDM 126 (133)
T ss_dssp GT------------SEECCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHH
T ss_pred HH------------cCCCCEEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHHHH
Confidence 44 777899999999999999999999999999999899999999999999876543
No 65
>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}
Probab=99.60 E-value=4.8e-15 Score=126.97 Aligned_cols=119 Identities=10% Similarity=0.137 Sum_probs=100.0
Q ss_pred CCCcccC--CCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCccccc
Q 011043 265 SHGKAFP--RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKL 342 (495)
Q Consensus 265 ~~g~~~~--~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~ 342 (495)
.++++|. .+++++.+++++.+|+++|.+++++++||++ ++.+ +++|++|..|+++.+.... ...
T Consensus 7 ~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd--~~~~---~~~Givt~~dl~~~~~~~~---------~~~ 72 (130)
T 3i8n_A 7 PVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYS--EQKD---NIIGFVHRLELFKMQQSGS---------GQK 72 (130)
T ss_dssp CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEES--SSTT---CEEEECCHHHHHHHHHTTT---------TTS
T ss_pred CHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEe--CCCC---cEEEEEEHHHHHHHHhcCC---------CcC
Confidence 4567887 4577999999999999999999999999993 3336 8999999999998765431 123
Q ss_pred ccccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 011043 343 PICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA 410 (495)
Q Consensus 343 ~v~~l~i~~~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~ 410 (495)
+++++ | +++.++.+++++.+|++.|.+++.+.+||+|++|+++|+||..|+++.+
T Consensus 73 ~v~~~------------m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~vGivt~~dil~~l 127 (130)
T 3i8n_A 73 QLGAV------------M-RPIQVVLNNTALPKVFDQMMTHRLQLALVVDEYGTVLGLVTLEDIFEHL 127 (130)
T ss_dssp BHHHH------------S-EECCEEETTSCHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHH
T ss_pred CHHHH------------h-cCCcCcCCCCcHHHHHHHHHHcCCeEEEEEcCCCCEEEEEEHHHHHHHH
Confidence 45554 6 3578999999999999999999999999999999999999999999865
No 66
>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1
Probab=99.60 E-value=2.3e-15 Score=140.65 Aligned_cols=120 Identities=18% Similarity=0.212 Sum_probs=103.1
Q ss_pred ccccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHH
Q 011043 351 TWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQ 430 (495)
Q Consensus 351 ~~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~ 430 (495)
+|..+++++|.++++++.+++++.+|+++|.+++++++||+|++++++|++|.+|+..... +.++.+
T Consensus 10 ~~~~~~~~~~~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~l~Givt~~dl~~~~~----------~~~v~~--- 76 (213)
T 1vr9_A 10 HHHMKVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLDL----------DSSVFN--- 76 (213)
T ss_dssp ---CBGGGGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTSCT----------TSBSGG---
T ss_pred ccccCHHHhhcCCCeEECCCCcHHHHHHHHHHCCCCEEEEEcCCCEEEEEEEHHHHHhhcC----------CCcHHH---
Confidence 3445666779999999999999999999999999999999998899999999999876421 234554
Q ss_pred cCCCCCCCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHhh
Q 011043 431 LGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 494 (495)
Q Consensus 431 ~~~~~~~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l~ 494 (495)
+|.++++++.+++++.+|++.|.+++++++||+|+ +|+++|+||..||++++.
T Consensus 77 ----------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~lvGiit~~Dil~~~~ 129 (213)
T 1vr9_A 77 ----------KVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDE-EMRLKGAVSLHDFLEALI 129 (213)
T ss_dssp ----------GCBCTTCCEETTSBHHHHHHHHHHCCCSEEEEECT-TCBEEEEEEHHHHHHHHH
T ss_pred ----------HccCCCEEECCCCcHHHHHHHHHHhCCCEEEEEcC-CCEEEEEEEHHHHHHHHH
Confidence 55778999999999999999999999999999994 699999999999998763
No 67
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1
Probab=99.59 E-value=6.6e-15 Score=124.78 Aligned_cols=118 Identities=16% Similarity=0.275 Sum_probs=100.8
Q ss_pred cccCCCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccc
Q 011043 268 KAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAI 347 (495)
Q Consensus 268 ~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l 347 (495)
++|.++++++.+++++.+|++.|.+++.+.+||++ ++ +++|++|..|+++++..... ....+++++
T Consensus 5 ~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd----~~---~~~G~it~~dl~~~~~~~~~-------~~~~~v~~~ 70 (125)
T 1pbj_A 5 DVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVK----EG---VRVGIVTTWDVLEAIAEGDD-------LAEVKVWEV 70 (125)
T ss_dssp HHCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEE----TT---EEEEEEEHHHHHHHHHHTCC-------TTTSBHHHH
T ss_pred HhcCCCceEECCCCcHHHHHHHHHHcCCCEEEEEe----CC---eeEEEEeHHHHHHHHhcCCc-------ccccCHHHH
Confidence 46888999999999999999999999999999993 56 89999999999987654311 123445555
Q ss_pred cCcccccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 011043 348 PVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 412 (495)
Q Consensus 348 ~i~~~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~ 412 (495)
|.+++.++.+++++.++++.|.+++.+++||+|+ |+++|++|.+|+++.+..
T Consensus 71 ------------m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~~~~Gvit~~dl~~~l~~ 122 (125)
T 1pbj_A 71 ------------MERDLVTISPRATIKEAAEKMVKNVVWRLLVEED-DEIIGVISATDILRAKMA 122 (125)
T ss_dssp ------------CBCGGGEECTTSCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHHC-
T ss_pred ------------cCCCCeEECCCCCHHHHHHHHHhcCCcEEEEEEC-CEEEEEEEHHHHHHHHHh
Confidence 7788999999999999999999999999999997 999999999999987644
No 68
>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}
Probab=99.59 E-value=4.6e-15 Score=126.96 Aligned_cols=117 Identities=11% Similarity=0.189 Sum_probs=96.4
Q ss_pred CCcccC--CCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccc
Q 011043 266 HGKAFP--RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLP 343 (495)
Q Consensus 266 ~g~~~~--~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~ 343 (495)
++++|. .+++++.+++++.+|+++|.+++++++||++ ++.+ +++|++|..|+++.+.. ...+
T Consensus 7 v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd--~~~~---~~~Givt~~dl~~~~~~-----------~~~~ 70 (129)
T 3jtf_A 7 VADIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYE--DDRD---NIIGILLAKDLLRYMLE-----------PALD 70 (129)
T ss_dssp HHHHCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEES--SSTT---CEEEEEEGGGGGGGGTC-----------TTSC
T ss_pred HHHhCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEc--CCCC---cEEEEEEHHHHHhHhcc-----------CCcC
Confidence 345677 6789999999999999999999999999993 2236 89999999999865431 0223
Q ss_pred cccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 011043 344 ICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK 411 (495)
Q Consensus 344 v~~l~i~~~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~ 411 (495)
++++ |. ++.++.+++++.+|+++|.+++.+.+||+|++|+++|+||.+|+++.+.
T Consensus 71 v~~~------------m~-~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~g~~~Giit~~Dil~~l~ 125 (129)
T 3jtf_A 71 IRSL------------VR-PAVFIPEVKRLNVLLREFRASRNHLAIVIDEHGGISGLVTMEDVLEQIV 125 (129)
T ss_dssp GGGG------------CB-CCCEEETTCBHHHHHHHHHTSSCCEEEEECC-CCEEEEEEHHHHHHHHH
T ss_pred HHHH------------hC-CCeEeCCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHh
Confidence 4443 64 4789999999999999999999999999998899999999999998654
No 69
>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*
Probab=99.59 E-value=3.5e-15 Score=135.62 Aligned_cols=122 Identities=13% Similarity=0.259 Sum_probs=99.5
Q ss_pred CCCCCC----ceee--cCCCCHHHHHHHHHHCCCCEEEEE--cCCCcEEEEEeHHHHHHHHhhcccccCc----------
Q 011043 358 EPNRRP----LAML--RPSASLSAALNLLVQAQVSSIPIV--DDNDSLLDIYCRSDITALAKDKAYAHIN---------- 419 (495)
Q Consensus 358 ~~m~~~----~~~v--~~~~sl~~a~~~m~~~~~~~lpVv--d~~g~lvGivs~~Dl~~~~~~~~~~~l~---------- 419 (495)
++|.+. ++++ .+++++.+|++.|.+++++++||+ |++|+++|+||..|+++...........
T Consensus 15 dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~~~~~~~~~~~~~~~~~~~~~~~ 94 (185)
T 2j9l_A 15 DVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVSTSIIYFT 94 (185)
T ss_dssp HHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCTTCEEECS
T ss_pred HHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCCCeEEEEEEHHHHHHHHHhhcccCCCccccceeecc
Confidence 337665 7788 999999999999999999999999 7889999999999999865432100000
Q ss_pred ----------ccccCHHHHHHcCCCCCCCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHH
Q 011043 420 ----------LSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDI 489 (495)
Q Consensus 420 ----------~~~~~v~~~l~~~~~~~~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DI 489 (495)
....++. ++|.+++.+|.+++++.+|++.|.+++++++||+| +|+++|+||+.||
T Consensus 95 ~~~~~~~~~~~~~~~v~-------------~im~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd--~g~~vGiit~~dl 159 (185)
T 2j9l_A 95 EHSPPLPPYTPPTLKLR-------------NILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH--NGRLLGIITKKDV 159 (185)
T ss_dssp SSCCCCCTTCCCCEECG-------------GGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHH
T ss_pred cCCcccccccccCccHH-------------HhhCcCCeEeCCCCCHHHHHHHHHhCCCcEEEEEE--CCEEEEEEEHHHH
Confidence 0112223 35678899999999999999999999999999999 5999999999999
Q ss_pred HHHhh
Q 011043 490 FKFLL 494 (495)
Q Consensus 490 l~~l~ 494 (495)
++++.
T Consensus 160 l~~l~ 164 (185)
T 2j9l_A 160 LKHIA 164 (185)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99874
No 70
>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}
Probab=99.58 E-value=3.3e-15 Score=129.12 Aligned_cols=119 Identities=8% Similarity=0.099 Sum_probs=97.4
Q ss_pred CcccC--CCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCccccccc
Q 011043 267 GKAFP--RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPI 344 (495)
Q Consensus 267 g~~~~--~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v 344 (495)
+++|. .+++++.+++++.+|+++|.+++++++||++ ++.+ +++|++|..|+++++.... ....++
T Consensus 6 ~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd--~~~~---~~vGivt~~dl~~~~~~~~--------~~~~~v 72 (136)
T 3lfr_A 6 RDIMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIG--ESHD---DVLGVLLAKDLLPLILKAD--------GDSDDV 72 (136)
T ss_dssp HHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEES--SSTT---CEEEEEEGGGGGGGGGSSS--------GGGCCG
T ss_pred HhccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEc--CCCC---cEEEEEEHHHHHHHHHhcc--------CCCcCH
Confidence 34676 5789999999999999999999999999993 2326 8999999999987654210 112334
Q ss_pred ccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 011043 345 CAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK 411 (495)
Q Consensus 345 ~~l~i~~~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~ 411 (495)
+++ |.+ ++++.+++++.+|+++|.+++++.+||+|++|+++|+||.+|+++.+.
T Consensus 73 ~~~------------m~~-~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~ 126 (136)
T 3lfr_A 73 KKL------------LRP-ATFVPESKRLNVLLREFRANHNHMAIVIDEYGGVAGLVTIEDVLEQIV 126 (136)
T ss_dssp GGT------------CBC-CCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHTTC-
T ss_pred HHH------------cCC-CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHh
Confidence 444 755 889999999999999999999999999999999999999999997543
No 71
>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}
Probab=99.57 E-value=1.4e-14 Score=125.08 Aligned_cols=121 Identities=17% Similarity=0.361 Sum_probs=101.7
Q ss_pred CCcccCCCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhH-HHHHHhhhccCCCCCccccccc
Q 011043 266 HGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGI-LKCVCRYFRHCSSSLPILKLPI 344 (495)
Q Consensus 266 ~g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dI-l~~l~~~~~~~~~~~~~l~~~v 344 (495)
++++|.++++++.+++++.+|+++|.+++.+.+||+ ++++ +++|+++..|+ ++++.... ....++
T Consensus 10 v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vv---d~~~---~~~Givt~~dl~~~~~~~~~--------~~~~~v 75 (138)
T 2p9m_A 10 VKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVI---DDEN---KVIGIVTTTDIGYNLIRDKY--------TLETTI 75 (138)
T ss_dssp GGGTSBCSCCCEETTSBHHHHHHHHHHHTCCEEEEE---CTTC---BEEEEEEHHHHHHHHTTTCC--------CSSCBH
T ss_pred HHHhhcCCceEECCCCcHHHHHHHHHHCCCcEEEEE---CCCC---eEEEEEEHHHHHHHHHhhcc--------cCCcCH
Confidence 456788899999999999999999999999999999 3457 89999999999 87654211 123445
Q ss_pred ccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHHCC-----CCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 011043 345 CAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQ-----VSSIPIVDDNDSLLDIYCRSDITALAKD 412 (495)
Q Consensus 345 ~~l~i~~~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~-----~~~lpVvd~~g~lvGivs~~Dl~~~~~~ 412 (495)
+++ |.+++.++.+++++.+|++.|.+++ .+.+||+|++|+++|++|.+|+++...+
T Consensus 76 ~~~------------m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~ 136 (138)
T 2p9m_A 76 GDV------------MTKDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDIIRTISK 136 (138)
T ss_dssp HHH------------SCSSCCCEETTSBHHHHHHHHTCC-----CCCEEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred HHH------------hCCCcEEECCCCCHHHHHHHHHhcCCccccccEEEEECCCCeEEEEEEHHHHHHHHHh
Confidence 554 8888999999999999999999999 9999999989999999999999986543
No 72
>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}
Probab=99.57 E-value=3.5e-15 Score=127.32 Aligned_cols=117 Identities=12% Similarity=0.153 Sum_probs=96.7
Q ss_pred CcccCCC--ceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCccccccc
Q 011043 267 GKAFPRP--LVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPI 344 (495)
Q Consensus 267 g~~~~~~--~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v 344 (495)
+++|.++ ++++.+++++.+|++.|.+++++++||++ ++.+ +++|++|..|+++.+.... ...++
T Consensus 6 ~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd--~~~~---~~vGivt~~dl~~~~~~~~---------~~~~v 71 (127)
T 3nqr_A 6 RDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVIS--EDKD---HIEGILMAKDLLPFMRSDA---------EAFSM 71 (127)
T ss_dssp HHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEES--SSTT---CEEEEEEGGGGGGGGSTTC---------CCCCH
T ss_pred HHhcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEc--CCCC---cEEEEEEHHHHHHHHhccC---------CCCCH
Confidence 3467744 89999999999999999999999999993 2326 8999999999987553211 12344
Q ss_pred ccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 011043 345 CAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA 410 (495)
Q Consensus 345 ~~l~i~~~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~ 410 (495)
+++ |.+ +.++.+++++.+|+++|.+++.+.+||+|++|+++|+||.+|+++.+
T Consensus 72 ~~~------------m~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Giit~~dll~~l 124 (127)
T 3nqr_A 72 DKV------------LRT-AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELI 124 (127)
T ss_dssp HHH------------CBC-CCEEETTCBHHHHHHHHHHTTCCEEEEECTTSCEEEEEEHHHHHHHC
T ss_pred HHH------------cCC-CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHH
Confidence 444 744 67899999999999999999999999999999999999999999854
No 73
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1
Probab=99.57 E-value=1.7e-14 Score=128.29 Aligned_cols=128 Identities=18% Similarity=0.285 Sum_probs=103.4
Q ss_pred CCcccCCCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCC-CCccccccc
Q 011043 266 HGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSS-SLPILKLPI 344 (495)
Q Consensus 266 ~g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~-~~~~l~~~v 344 (495)
++++|.++++++.+++++.+|+++|.+++++.+||+ ++++ +++|++|..|+++++...+..... .......++
T Consensus 7 v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv---d~~~---~lvGivt~~dl~~~~~~~~~~~~~~~~~~~~~~v 80 (160)
T 2o16_A 7 VEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIV---DANK---KLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPL 80 (160)
T ss_dssp GGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEE---CTTC---BEEEEEEHHHHHHHHHHHCC---------CCCBH
T ss_pred HHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEE---cCCC---cEEEEEeHHHHHHHHHHhhcccccccchhcccCH
Confidence 456888899999999999999999999999999999 3557 899999999999887653221000 000112344
Q ss_pred ccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 011043 345 CAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 412 (495)
Q Consensus 345 ~~l~i~~~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~ 412 (495)
.++ |.++++++.+++++.+|++.|.+++.+++||+|+ |+++|+||..||++.+..
T Consensus 81 ~~i------------m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~lvGiit~~dil~~~~~ 135 (160)
T 2o16_A 81 FEV------------MHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAK-DVLVGIITDSDFVTIAIN 135 (160)
T ss_dssp HHH------------SCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEET-TEEEEEECHHHHHHHHHH
T ss_pred HHH------------hcCCCeEECCCCCHHHHHHHHHHhCCCEEEEEEC-CEEEEEEEHHHHHHHHHH
Confidence 444 8889999999999999999999999999999997 999999999999986543
No 74
>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*
Probab=99.57 E-value=5.3e-14 Score=134.17 Aligned_cols=210 Identities=12% Similarity=0.184 Sum_probs=129.3
Q ss_pred ccccccCCCCcceEEecCCCCHHHHHHHHHHcCCcEeeeeeCCCCeEEEEeehHHHHHHHHHHhcCCCCCChhhHhhhhH
Q 011043 170 HTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTI 249 (495)
Q Consensus 170 ~~~~d~~p~s~~vi~l~~~~~v~~A~~~l~e~~i~~~Pv~d~~~~~~vGilt~~Dii~~l~~~~~~~~~l~~~~l~~~~i 249 (495)
.++.|++- .++++++++.++.+|++.|.+++++++||+|.+ ++++|++|..|+++.+..... .........++
T Consensus 7 ~~v~~im~--~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~-~~l~Giit~~di~~~~~~~~~----~~~~~~~~~~~ 79 (245)
T 3l2b_A 7 LKVEDLEM--DKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGN-NHLLGMLSTSNITATYMDIWD----SNILAKSATSL 79 (245)
T ss_dssp CBGGGSCC--BCCCCBCTTCBHHHHHHHHHHTTCSEEEEECTT-CBEEEEEEHHHHHHHHHCCCC----TTHHHHTTCCH
T ss_pred CcHHHhcC--CCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHHhhh----hhhhhhccCCH
Confidence 45777773 478999999999999999999999999999964 799999999999987742110 00011111222
Q ss_pred HHHHHHHhhh-cccc-----------------CCCCccc-CCCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCC-
Q 011043 250 SAWKEGKAYL-NRQI-----------------DSHGKAF-PRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGS- 309 (495)
Q Consensus 250 ~~~~~~~~~~-~~~~-----------------~~~g~~~-~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~- 309 (495)
..+.+..... -... ....+.+ ...++.+. .-.++...+++++++.+++.........
T Consensus 80 ~~v~~~l~~~~l~~~~~~~~~~g~~~i~a~~~~~~~~~~~~~~ivIvg---dr~~~~~~~i~~~~~~liit~~~~~~~~v 156 (245)
T 3l2b_A 80 DNILDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAIAG---DRAEIQAELIELKVSLLIVTGGHTPSKEI 156 (245)
T ss_dssp HHHHHHTTCEEEECCTTCCCCCSCEEECCSCGGGGGGTCCTTCEEEEC---SCHHHHHHHHHTTCSEEEECTTCCCCHHH
T ss_pred HHHHHHhCCEEEeccCCcceeeeeEEEEeCChHHHHhcCCCCCEEEEC---CCHHHHHHHHHcCCCEEEECCCCCCCHHH
Confidence 2222111100 0000 0000111 12233331 2378888999999999988732111000
Q ss_pred -----CCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccccCcccccccCCCCC-CCceeecCCCCHHHHHHHHHHC
Q 011043 310 -----FPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNR-RPLAMLRPSASLSAALNLLVQA 383 (495)
Q Consensus 310 -----~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~~~m~-~~~~~v~~~~sl~~a~~~m~~~ 383 (495)
...+-.+.+..|........ ....+++++ |. +++.++.+++++.+|+++|.++
T Consensus 157 ~~~a~~~~~~~i~t~~d~~~~~~~~---------~~~~~v~~i------------m~~~~~~~~~~~~~~~~~~~~m~~~ 215 (245)
T 3l2b_A 157 IELAKKNNITVITTPHDSFTASRLI---------VQSLPVDYV------------MTKDNLVAVSTDDLVEDVKVTMSET 215 (245)
T ss_dssp HHHHHHHTCEEEECSSCHHHHHHHG---------GGGSBHHHH------------SBCTTCCCEETTSBHHHHHHHHHHH
T ss_pred HHHHHHcCCeEEEeCCChHHHHHHH---------hcCCceeeE------------ecCCccEEECCCCcHHHHHHHHHhc
Confidence 00133444555543322111 112334444 88 8899999999999999999999
Q ss_pred CCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 011043 384 QVSSIPIVDDNDSLLDIYCRSDITALA 410 (495)
Q Consensus 384 ~~~~lpVvd~~g~lvGivs~~Dl~~~~ 410 (495)
+++++||+|++|+++|+||.+|+++..
T Consensus 216 ~~~~~pVvd~~~~~~Giit~~dll~~~ 242 (245)
T 3l2b_A 216 RYSNYPVIDENNKVVGSIARFHLISTH 242 (245)
T ss_dssp CCSEEEEECTTCBEEEEEECC------
T ss_pred CCceEEEEcCCCeEEEEEEHHHhhchh
Confidence 999999999999999999999998754
No 75
>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}
Probab=99.57 E-value=8e-15 Score=129.36 Aligned_cols=118 Identities=11% Similarity=0.144 Sum_probs=101.1
Q ss_pred CcccCC--CceeeCCCCcHHHHHHHHHhCCCceeeEE-ecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccc
Q 011043 267 GKAFPR--PLVYAGPNDNLKDVARKILHNEVATVPII-HSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLP 343 (495)
Q Consensus 267 g~~~~~--~~i~v~~~~sl~~a~~~m~~~~i~~lpVv-~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~ 343 (495)
+++|.+ +++++.+++++.+|+++|.+++++++||+ + ++.+ +++|++|..|+++.+.... ..+
T Consensus 23 ~~iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d--~~~~---~lvGivt~~dl~~~~~~~~----------~~~ 87 (153)
T 3oco_A 23 SDVMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTAD--NDKD---KIIGYAYNYDIVRQARIDD----------KAK 87 (153)
T ss_dssp HHHSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEET--TEEE---EEEEEEEHHHHHHHHHHHT----------TSB
T ss_pred eeEecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEEC--CCCC---cEEEEEEHHHHHhHHhcCC----------CCc
Confidence 446775 78999999999999999999999999999 3 2336 8999999999998776431 234
Q ss_pred cccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 011043 344 ICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 412 (495)
Q Consensus 344 v~~l~i~~~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~ 412 (495)
++++ | +++.++.+++++.+|++.|.+++++.+||+|++|+++|+||..|+++.+..
T Consensus 88 v~~~------------m-~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~~vGivt~~dil~~l~~ 143 (153)
T 3oco_A 88 ISTI------------M-RDIVSVPENMKVPDVMEEMSAHRVPMAIVIDEYGGTSGIITDKDVYEELFG 143 (153)
T ss_dssp GGGT------------C-BCCEEEETTSBHHHHHHHHHHTTCSCEEEECTTSCEEEEECHHHHHHHHHC
T ss_pred HHHH------------h-CCCeEECCCCCHHHHHHHHHHcCCcEEEEEeCCCCEEEEeeHHHHHHHHhc
Confidence 4444 8 789999999999999999999999999999999999999999999987654
No 76
>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1
Probab=99.57 E-value=2.5e-14 Score=123.48 Aligned_cols=123 Identities=16% Similarity=0.324 Sum_probs=102.0
Q ss_pred CCCcccCCCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCccccccc
Q 011043 265 SHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPI 344 (495)
Q Consensus 265 ~~g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v 344 (495)
.++++|.++++++.+++++.+|++.|.+++++.+||+ ++++ +++|++|..|+++.+..... ....++
T Consensus 8 ~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vv---d~~~---~~~Givt~~dl~~~~~~~~~-------~~~~~v 74 (138)
T 2yzi_A 8 PIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVI---NDDG---NVVGFFTKSDIIRRVIVPGL-------PYDIPV 74 (138)
T ss_dssp BGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEE---CTTS---CEEEEEEHHHHHHHTTTTCC-------CTTSBG
T ss_pred hHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEE---cCCC---cEEEEEeHHHHHHHHHhcCC-------cccCCH
Confidence 3566888999999999999999999999999999999 3457 89999999999843322100 112334
Q ss_pred ccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhc
Q 011043 345 CAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK 413 (495)
Q Consensus 345 ~~l~i~~~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~ 413 (495)
.++ |.+++.++.+++++.+|++.|.+++.+++ |+|++|+++|++|..|+++.....
T Consensus 75 ~~~------------m~~~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~~g~~~Giit~~dil~~~~~~ 130 (138)
T 2yzi_A 75 ERI------------MTRNLITANVNTPLGEVLRKMAEHRIKHI-LIEEEGKIVGIFTLSDLLEASRRR 130 (138)
T ss_dssp GGT------------CBCSCCEEETTSBHHHHHHHHHHHTCSEE-EEEETTEEEEEEEHHHHHHHHHCC
T ss_pred HHH------------hhCCCeEECCCCcHHHHHHHHHhcCCCEE-EECCCCCEEEEEEHHHHHHHHHHH
Confidence 443 88889999999999999999999999999 999889999999999999876553
No 77
>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}
Probab=99.56 E-value=1.6e-14 Score=127.96 Aligned_cols=118 Identities=15% Similarity=0.188 Sum_probs=98.6
Q ss_pred ccCCCCcccCC--CceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcc
Q 011043 262 QIDSHGKAFPR--PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPI 339 (495)
Q Consensus 262 ~~~~~g~~~~~--~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~ 339 (495)
....++++|.+ +++++.+++++.+|+++|.+++++++||++ ++.+ +++|++|..|+++++...
T Consensus 36 ~~~~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd--~~~~---~lvGivt~~dl~~~~~~~---------- 100 (156)
T 3oi8_A 36 SDLEVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIG--EDKD---EVLGILHAKDLLKYMFNP---------- 100 (156)
T ss_dssp TTCBGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEES--SSTT---CEEEEEEGGGGGGGSSCG----------
T ss_pred CCCCHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEc--CCCC---cEEEEEEHHHHHHHHHcC----------
Confidence 34456788986 789999999999999999999999999993 3335 799999999998654321
Q ss_pred cccccccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHH
Q 011043 340 LKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT 407 (495)
Q Consensus 340 l~~~v~~l~i~~~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~ 407 (495)
...+++++ |.+ +.++.+++++.+|++.|.+++.+.+||+|++|+++|+||..|++
T Consensus 101 ~~~~v~~i------------m~~-~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~g~~~Givt~~Dil 155 (156)
T 3oi8_A 101 EQFHLKSI------------LRP-AVFVPEGKSLTALLKEFREQRNHMAIVIDEYGGTSGLVTFEDII 155 (156)
T ss_dssp GGCCHHHH------------CBC-CCEEETTSBHHHHHHHHHHTTCCEEEEECTTSSEEEEEEHHHHC
T ss_pred CcccHHHH------------cCC-CEEECCCCCHHHHHHHHHhcCCeEEEEECCCCCEEEEEEHHHhc
Confidence 12344444 754 78999999999999999999999999999999999999999985
No 78
>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}
Probab=99.56 E-value=1.4e-14 Score=129.51 Aligned_cols=117 Identities=15% Similarity=0.278 Sum_probs=99.9
Q ss_pred CCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccccCcc
Q 011043 272 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 351 (495)
Q Consensus 272 ~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~ 351 (495)
.+++++.+++++.+|+++|.+++++.+||+ ++++ +++|++|..||++++...... ....++.++
T Consensus 35 ~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv---d~~~---~~~Givt~~dl~~~~~~~~~~------~~~~~v~~~---- 98 (165)
T 3fhm_A 35 RDVVTVGPDVSIGEAAGTLHAHKIGAVVVT---DADG---VVLGIFTERDLVKAVAGQGAA------SLQQSVSVA---- 98 (165)
T ss_dssp SCCCEECTTSBHHHHHHHHHHHTCSEEEEE---CTTS---CEEEEEEHHHHHHHHHHHGGG------GGTSBGGGT----
T ss_pred CCCeEECCCCCHHHHHHHHHHcCCCEEEEE---cCCC---eEEEEEEHHHHHHHHHhcCCc------cccCCHHHH----
Confidence 368899999999999999999999999999 4567 899999999999888754211 123344444
Q ss_pred cccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhc
Q 011043 352 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK 413 (495)
Q Consensus 352 ~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~ 413 (495)
|.++++++.+++++.+|++.|.+++++++||+|+ |+++|+||..||++.+...
T Consensus 99 --------m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~~~Giit~~dil~~~~~~ 151 (165)
T 3fhm_A 99 --------MTKNVVRCQHNSTTDQLMEIMTGGRFRHVPVEEN-GRLAGIISIGDVVKARIGE 151 (165)
T ss_dssp --------SBSSCCCBCTTCBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHTTCC
T ss_pred --------hcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHHHH
Confidence 8888999999999999999999999999999998 9999999999999876543
No 79
>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*
Probab=99.56 E-value=2.3e-14 Score=127.30 Aligned_cols=121 Identities=17% Similarity=0.296 Sum_probs=101.0
Q ss_pred CCcccCCCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccc
Q 011043 266 HGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPIC 345 (495)
Q Consensus 266 ~g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~ 345 (495)
++++|.++ +++.+++++.+|+++|.+++++.+||+ ++++ +++|++|..||++.+.... .....++.
T Consensus 19 v~~im~~~-~~v~~~~~~~~a~~~m~~~~~~~~~Vv---d~~~---~~~Givt~~dl~~~~~~~~-------~~~~~~v~ 84 (159)
T 3fv6_A 19 VKDFQSIP-VVIHENVSVYDAICTMFLEDVGTLFVV---DRDA---VLVGVLSRKDLLRASIGQQ-------ELTSVPVH 84 (159)
T ss_dssp GGGSCBCC-CEEETTSBHHHHHHHHHHHTCSEEEEE---CTTS---CEEEEEEHHHHHHHHTSCS-------CTTTCBGG
T ss_pred HHHHcCCC-EEECCCCcHHHHHHHHHHCCCCEEEEE---cCCC---cEEEEEeHHHHHHHhhccC-------cccCcCHH
Confidence 45678875 599999999999999999999999999 3557 8999999999998764321 11233444
Q ss_pred cccCcccccccCCCCCC--CceeecCCCCHHHHHHHHHHCCCCEEEEEcCCC---cEEEEEeHHHHHHHHhh
Q 011043 346 AIPVGTWVPKIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDND---SLLDIYCRSDITALAKD 412 (495)
Q Consensus 346 ~l~i~~~~~~v~~~m~~--~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g---~lvGivs~~Dl~~~~~~ 412 (495)
++ |.+ +++++.+++++.+|+++|.+++++++||+|++| +++|+||..||++++.+
T Consensus 85 ~~------------m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~~~vGiit~~dil~~l~~ 144 (159)
T 3fv6_A 85 II------------MTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTKILVS 144 (159)
T ss_dssp GT------------SEETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEECSSSEEEEEEEEHHHHHHHHHH
T ss_pred HH------------HcCCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEeCCCcceeEEEEEEHHHHHHHHHH
Confidence 44 777 889999999999999999999999999999888 99999999999986643
No 80
>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}
Probab=99.56 E-value=2.6e-14 Score=122.51 Aligned_cols=125 Identities=13% Similarity=0.186 Sum_probs=100.8
Q ss_pred cccccCCCCcceEEecCCCCHHHHHHHHHHcCCcEeeeeeCCCCeEEEEeehHHHHHHHHHHhcCCCCCChhhHhhhhHH
Q 011043 171 TAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTIS 250 (495)
Q Consensus 171 ~~~d~~p~s~~vi~l~~~~~v~~A~~~l~e~~i~~~Pv~d~~~~~~vGilt~~Dii~~l~~~~~~~~~l~~~~l~~~~i~ 250 (495)
++.|+|-...++++++++.|+.+|++.|.++++.++||++.+.++++|++|..|+++.+.. +... ...++.
T Consensus 3 ~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~~----~~~~-----~~~~v~ 73 (130)
T 3hf7_A 3 SVNDIMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTE----KKEF-----TKEIML 73 (130)
T ss_dssp BHHHHSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHTS----SSCC-----CHHHHH
T ss_pred CHHHhCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHhc----cCcc-----chhhHH
Confidence 4556665556799999999999999999999999999998656899999999999887621 1111 111111
Q ss_pred HHHHHHhhhccccCCCCcccCCCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHh
Q 011043 251 AWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCR 328 (495)
Q Consensus 251 ~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~ 328 (495)
++| ++++++.+++++.+|+++|.+++++.+||+ +++| +++|++|..||++.+..
T Consensus 74 -----------------~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vv---d~~g---~lvGiit~~Dil~~l~g 127 (130)
T 3hf7_A 74 -----------------RAA-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVV---DEYG---DIQGLVTVEDILEEIVG 127 (130)
T ss_dssp -----------------HHS-BCCCEEETTCBHHHHHHHHHHHCCCEEEEE---CTTS---CEEEEEEHHHHHHHHHC
T ss_pred -----------------Hhc-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEE---cCCC---CEEEEeeHHHHHHHHhC
Confidence 135 567899999999999999999999999999 4567 89999999999988764
No 81
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0
Probab=99.56 E-value=1.7e-14 Score=126.54 Aligned_cols=123 Identities=15% Similarity=0.192 Sum_probs=99.2
Q ss_pred ccC--CCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCccccccccc
Q 011043 269 AFP--RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICA 346 (495)
Q Consensus 269 ~~~--~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~ 346 (495)
+|. .+++++.+++++.+|++.|.+++++.+||+ ++++ +++|++|..||++++....... .......+
T Consensus 20 im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv---d~~~---~~~Givt~~dl~~~~~~~~~~~--~~~~~~~~--- 88 (150)
T 3lqn_A 20 LMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVL---DPMY---KLHGLISTAMILDGILGLERIE--FERLEEMK--- 88 (150)
T ss_dssp HSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEE---CTTC---BEEEEEEHHHHHHHTBCSSSBC--GGGGGGCB---
T ss_pred cccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEE---CCCC---CEEEEEEHHHHHHHHHhhcccc--hhHHhcCC---
Confidence 566 468999999999999999999999999999 3567 8999999999998765321100 00111233
Q ss_pred ccCcccccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhc
Q 011043 347 IPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK 413 (495)
Q Consensus 347 l~i~~~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~ 413 (495)
++++|.+++.++.+++++.+|++.|.++++ +||+|++|+++|+||..||++.+...
T Consensus 89 ---------v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~~g~~~Giit~~dil~~l~~~ 144 (150)
T 3lqn_A 89 ---------VEQVMKQDIPVLKLEDSFAKALEMTIDHPF--ICAVNEDGYFEGILTRRAILKLLNKK 144 (150)
T ss_dssp ---------GGGTCBSSCCEEETTCBHHHHHHHHHHCSE--EEEECTTCBEEEEEEHHHHHHHHHHH
T ss_pred ---------HHHHhcCCCceeCCCCCHHHHHHHHHhCCE--EEEECCCCcEEEEEEHHHHHHHHHHH
Confidence 344488899999999999999999999886 99999999999999999999876553
No 82
>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A
Probab=99.56 E-value=2.5e-14 Score=124.17 Aligned_cols=119 Identities=18% Similarity=0.306 Sum_probs=100.2
Q ss_pred CCcccCCCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCC-CCCCCeEEEEEehhhHHHHHHhhhccCCCCCccccccc
Q 011043 266 HGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQ-DGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPI 344 (495)
Q Consensus 266 ~g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~-~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v 344 (495)
++++|.++++++.+++++.+|+++|.+++++.+||++ ++ .. +++|++|..|+++++..... ...++
T Consensus 7 v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd--~~~~~---~~~Givt~~dl~~~~~~~~~--------~~~~v 73 (141)
T 2rih_A 7 TSELLKRPPVSLPETATIREVATELAKNRVGLAVLTA--RDNPK---RPVAVVSERDILRAVAQRLD--------LDGPA 73 (141)
T ss_dssp GGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEE--TTEEE---EEEEEEEHHHHHHHHHTTCC--------TTSBS
T ss_pred HHHHhcCCCeEeCCCCcHHHHHHHHHHcCCCEEEEEc--CCCcc---eeEEEEEHHHHHHHHhcCCC--------CCCCH
Confidence 4568889999999999999999999999999999995 22 12 59999999999987654211 12344
Q ss_pred ccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 011043 345 CAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA 410 (495)
Q Consensus 345 ~~l~i~~~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~ 410 (495)
.++ |.+++.++.++ ++.+|++.|.+++.+.+||+|++|+++|+||.+|+++..
T Consensus 74 ~~~------------m~~~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~dll~~~ 126 (141)
T 2rih_A 74 MPI------------ANSPITVLDTD-PVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFER 126 (141)
T ss_dssp GGG------------CBCCCEEETTS-BHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSCH
T ss_pred HHH------------cCCCCeEEcCC-CHHHHHHHHHHcCCeEEEEEcCCCcEEEEEEHHHHHHHH
Confidence 444 88899999999 999999999999999999999899999999999998643
No 83
>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1
Probab=99.55 E-value=2.4e-14 Score=123.26 Aligned_cols=119 Identities=14% Similarity=0.298 Sum_probs=99.0
Q ss_pred cccC---CCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCccccccc
Q 011043 268 KAFP---RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPI 344 (495)
Q Consensus 268 ~~~~---~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v 344 (495)
++|. ++++++.+++++.+|++.|.+++++.+||++ ++ +++|++|..|+++.+..... .....++
T Consensus 10 ~im~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd----~~---~~~Givt~~dl~~~~~~~~~------~~~~~~v 76 (135)
T 2rc3_A 10 HLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMK----DE---KLVGILTERDFSRKSYLLDK------PVKDTQV 76 (135)
T ss_dssp HHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEE----TT---EEEEEEEHHHHHHHGGGSSS------CGGGSBG
T ss_pred HHHhcCCCCcEEECCCCcHHHHHHHHHhcCCCEEEEEE----CC---EEEEEEehHHHHHHHHHcCC------CcccCCH
Confidence 3566 7899999999999999999999999999993 56 89999999999865432210 0122334
Q ss_pred ccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 011043 345 CAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 412 (495)
Q Consensus 345 ~~l~i~~~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~ 412 (495)
.+ +|.+++.++.+++++.+|++.|.+++.+++||+| +|+++|+||.+|+++.+..
T Consensus 77 ~~------------~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dll~~~~~ 131 (135)
T 2rc3_A 77 KE------------IMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDAIS 131 (135)
T ss_dssp GG------------TSBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHC
T ss_pred HH------------hccCCCeEECCCCcHHHHHHHHHHhCCCEEEEEe-CCEEEEEEEHHHHHHHHHh
Confidence 44 4888899999999999999999999999999999 7999999999999986643
No 84
>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*
Probab=99.55 E-value=2.8e-14 Score=125.17 Aligned_cols=117 Identities=16% Similarity=0.232 Sum_probs=100.3
Q ss_pred CCcccCC--CceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccc
Q 011043 266 HGKAFPR--PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLP 343 (495)
Q Consensus 266 ~g~~~~~--~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~ 343 (495)
++++|.+ +++++.+++++.+|+++|.+++++.+||+ ++++ +++|++|..|+++++.... .....+
T Consensus 30 v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vv---d~~~---~~~Givt~~dl~~~~~~~~-------~~~~~~ 96 (149)
T 3k2v_A 30 VNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAIC---DDDM---NIIGIFTDGDLRRVFDTGV-------DMRDAS 96 (149)
T ss_dssp GGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEE---CTTC---BEEEEEEHHHHHHHHCSSS-------CCTTCB
T ss_pred HHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEE---CCCC---cEEEEecHHHHHHHHhcCC-------CcccCc
Confidence 4568888 89999999999999999999999999999 4567 8999999999998775421 112345
Q ss_pred cccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011043 344 ICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (495)
Q Consensus 344 v~~l~i~~~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~ 408 (495)
+.++ |.+++.++.+++++.+|++.|.+++++.+||+|++ +++|+||.+||++
T Consensus 97 v~~~------------m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~~Giit~~dil~ 148 (149)
T 3k2v_A 97 IADV------------MTRGGIRIRPGTLAVDALNLMQSRHITCVLVADGD-HLLGVVHMHDLLR 148 (149)
T ss_dssp HHHH------------SEESCCEECTTCBHHHHHHHHHHHTCSEEEEEETT-EEEEEEEHHHHTC
T ss_pred HHHH------------cCCCCeEECCCCCHHHHHHHHHHcCCCEEEEecCC-EEEEEEEHHHhhc
Confidence 5555 87888999999999999999999999999999965 9999999999864
No 85
>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}
Probab=99.54 E-value=2.2e-14 Score=125.68 Aligned_cols=129 Identities=16% Similarity=0.222 Sum_probs=100.6
Q ss_pred CCcccCC--CceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccC------CCCC
Q 011043 266 HGKAFPR--PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHC------SSSL 337 (495)
Q Consensus 266 ~g~~~~~--~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~------~~~~ 337 (495)
++++|.+ +++++.+++++.+|+++|.+++++.+||+ ++++ +++|++|..|+++++....... ....
T Consensus 7 v~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vv---d~~~---~~~G~vt~~dl~~~~~~~~~~~~~~~~~~~~~ 80 (152)
T 4gqw_A 7 VGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVI---DEDW---KLVGLVSDYDLLALDSGDSTWKTFNAVQKLLS 80 (152)
T ss_dssp GGGTSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEE---CTTC---BEEEEEEHHHHTTCC----CCHHHHHHHTC--
T ss_pred hhhccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEE---eCCC---eEEEEEEHHHHHHhhcccCcccchHHHHHHHH
Confidence 4567877 89999999999999999999999999999 3557 8999999999986432110000 0000
Q ss_pred cccccccccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 011043 338 PILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 412 (495)
Q Consensus 338 ~~l~~~v~~l~i~~~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~ 412 (495)
.....++.+ +|.++++++.+++++.+|+++|.+++++++||+|++|+++|+||.+||++.+..
T Consensus 81 ~~~~~~v~~------------~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Giit~~dil~~~~~ 143 (152)
T 4gqw_A 81 KTNGKLVGD------------LMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAALQ 143 (152)
T ss_dssp ---CCBHHH------------HSEESCCCEESSSBHHHHHHHHHHSSCCEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred HhccccHHH------------hcCCCceEECCCCcHHHHHHHHHHCCCCEEEEECCCCcEEEEEEHHHHHHHHHh
Confidence 011233333 388888999999999999999999999999999989999999999999987654
No 86
>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A
Probab=99.54 E-value=4.3e-14 Score=122.74 Aligned_cols=120 Identities=20% Similarity=0.218 Sum_probs=98.0
Q ss_pred ccCCCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCccccccccccc
Q 011043 269 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIP 348 (495)
Q Consensus 269 ~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ 348 (495)
+|.++++++.+++++.+|+++|.+++++.+||+ ++++ +++|++|..|+++++..... .....++.++
T Consensus 16 ~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vv---d~~~---~~~Givt~~dl~~~~~~~~~------~~~~~~v~~~- 82 (144)
T 2nyc_A 16 ITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPII---DENG---YLINVYEAYDVLGLIKGGIY------NDLSLSVGEA- 82 (144)
T ss_dssp CBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEE---CTTC---BEEEEEEHHHHHHHHHTC----------CCSBHHHH-
T ss_pred CCCCCceEECCCCcHHHHHHHHHHcCcceeeEE---cCCC---cEEEEEcHHHHHHHhccccc------ccCCccHHHH-
Confidence 677889999999999999999999999999999 3457 89999999999987653210 1123344443
Q ss_pred CcccccccCCCCCC------CceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 011043 349 VGTWVPKIGEPNRR------PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 412 (495)
Q Consensus 349 i~~~~~~v~~~m~~------~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~ 412 (495)
|.+ ++.++.+++++.+|++.|.+++.+++||+|++|+++|+||.+|+++.+..
T Consensus 83 -----------m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~~ 141 (144)
T 2nyc_A 83 -----------LMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYILL 141 (144)
T ss_dssp -----------HHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred -----------HhcCccccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHHh
Confidence 443 67899999999999999999999999999988999999999999986543
No 87
>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1
Probab=99.54 E-value=8.2e-14 Score=123.30 Aligned_cols=127 Identities=15% Similarity=0.206 Sum_probs=101.4
Q ss_pred CCcccCCCceeeCCCCcHHHHHHHHHhCCCce-eeEEecCCCCCCCCeEEEEEehhhHHHHHHhhh----ccCCC----C
Q 011043 266 HGKAFPRPLVYAGPNDNLKDVARKILHNEVAT-VPIIHSSSQDGSFPQLLHIASLSGILKCVCRYF----RHCSS----S 336 (495)
Q Consensus 266 ~g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~-lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~----~~~~~----~ 336 (495)
++++|.++++++.+++++.+|+++|.+++++. +||++ ++ +++|++|..|+++++...+ ..... .
T Consensus 18 v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd----~~---~~vGivt~~dl~~~~~~~~~~~~~~~~~~~~~~ 90 (157)
T 1o50_A 18 VCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVAR----DN---KLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSM 90 (157)
T ss_dssp HTTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEE----TT---EEEEEEEHHHHHHHHHHHHHCCCC-------CC
T ss_pred HhhcccCCCceECCCCCHHHHHHHHHhCCCCccEEEEE----CC---EEEEEEEHHHHHHHHhhhHHhhhccHHHHHHHH
Confidence 35689999999999999999999999999999 99994 23 6999999999998765321 00000 0
Q ss_pred CcccccccccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 011043 337 LPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 412 (495)
Q Consensus 337 ~~~l~~~v~~l~i~~~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~ 412 (495)
......++ +++|.+ ++++.+++++.+|+++|.+++++++||+|++|+++|+||.+||++.+.+
T Consensus 91 ~~~~~~~v------------~~im~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dll~~l~~ 153 (157)
T 1o50_A 91 KRLIAKNA------------SEIMLD-PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALWK 153 (157)
T ss_dssp CCCSSCBH------------HHHCBC-CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH
T ss_pred HHHcCCcH------------HHHcCC-CeEECCCCCHHHHHHHHHHCCCcEEEEEcCCCEEEEEEEHHHHHHHHHH
Confidence 00112233 344888 9999999999999999999999999999988999999999999987654
No 88
>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A
Probab=99.54 E-value=3.9e-14 Score=128.96 Aligned_cols=123 Identities=15% Similarity=0.190 Sum_probs=102.8
Q ss_pred CCcccCCCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccc
Q 011043 266 HGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPIC 345 (495)
Q Consensus 266 ~g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~ 345 (495)
++++|.++++++.+++++.+|+++|.+++++.+||+ ++++ +++|++|..||++++..... .....+++
T Consensus 11 v~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~~pVv---d~~g---~~vGivt~~dl~~~~~~~~~------~~~~~~v~ 78 (184)
T 1pvm_A 11 VEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVK---DDNG---NDVGLLSERSIIKRFIPRNK------KPDEVPIR 78 (184)
T ss_dssp GGGTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEE---CTTS---CEEEEEEHHHHHHHTGGGCC------CGGGSBGG
T ss_pred HHHhcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEE---cCCC---cEEEEEeHHHHHHHHhhccc------CcccCCHH
Confidence 456888999999999999999999999999999999 3457 89999999999987653210 01123344
Q ss_pred cccCcccccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 011043 346 AIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 412 (495)
Q Consensus 346 ~l~i~~~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~ 412 (495)
+ +|.+++.++.+++++.+|+++|.+++.+.+||+|++|+++|+||..||++.+..
T Consensus 79 ~------------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~ 133 (184)
T 1pvm_A 79 L------------VMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLSR 133 (184)
T ss_dssp G------------TSBSSCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTSCH
T ss_pred H------------HhCCCCcEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHHh
Confidence 3 488889999999999999999999999999999988999999999999875543
No 89
>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}
Probab=99.54 E-value=9.2e-14 Score=125.35 Aligned_cols=123 Identities=7% Similarity=0.094 Sum_probs=102.3
Q ss_pred ccCCCCcccC--CCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcc
Q 011043 262 QIDSHGKAFP--RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPI 339 (495)
Q Consensus 262 ~~~~~g~~~~--~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~ 339 (495)
....++++|. ++++++.+++++.+|+++|.+++++++||++ ++.+ +++|+++.+||++++....
T Consensus 34 ~~~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd--~~~~---~lvGivt~~Dl~~~~~~~~--------- 99 (173)
T 3ocm_A 34 AERSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCR--GSLD---EVVGIGRAKDLVADLITEG--------- 99 (173)
T ss_dssp TTSCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEES--SSTT---SEEEEEEHHHHHHHHHHHS---------
T ss_pred CCCCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEe--CCCC---CEEEEEEHHHHHHHHhcCC---------
Confidence 3456778896 4689999999999999999999999999993 3336 8999999999998765421
Q ss_pred cccccccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhc
Q 011043 340 LKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK 413 (495)
Q Consensus 340 l~~~v~~l~i~~~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~ 413 (495)
..++. + + ++++++.+++++.+|+++|.+++++.+||+|++|+++|+||..||+..+...
T Consensus 100 -~~~v~-~------------~-~~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde~g~lvGiIT~~Dil~~l~~~ 158 (173)
T 3ocm_A 100 -RVRRN-R------------L-RDPIIVHESIGILRLMDTLKRSRGQLVLVADEFGAIEGLVTPIDVFEAIAGE 158 (173)
T ss_dssp -SCCGG-G------------S-BCCCEECGGGCHHHHHHHHHHSTTCCEEEECTTCCEEEEECHHHHHHHHHCC
T ss_pred -cchhH-h------------c-CCCeEECCCCcHHHHHHHHHHcCCeEEEEEeCCCCEEEEEeHHHHHHHHhCc
Confidence 12222 2 3 5678999999999999999999999999999999999999999999876543
No 90
>2uv4_A 5'-AMP-activated protein kinase subunit gamma-1; transferase, CBS domain, lipid synthesis, fatty acid biosynthesis; HET: AMP; 1.33A {Homo sapiens} PDB: 2uv5_A* 2uv6_A* 2uv7_A*
Probab=99.54 E-value=7.8e-14 Score=122.74 Aligned_cols=115 Identities=17% Similarity=0.246 Sum_probs=96.8
Q ss_pred CCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccccCcc
Q 011043 272 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 351 (495)
Q Consensus 272 ~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~ 351 (495)
++++++.+++++.+|+++|.+++++.+||+ +++| +++|++|..|+++++..... .....++.++
T Consensus 29 ~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv---d~~~---~~vGivt~~dl~~~~~~~~~------~~~~~~v~~~---- 92 (152)
T 2uv4_A 29 ANIAMVRTTTPVYVALGIFVQHRVSALPVV---DEKG---RVVDIYSKFDVINLAAEKTY------NNLDVSVTKA---- 92 (152)
T ss_dssp SSCCCEETTCBHHHHHHHHHHHCCSEEEEE---CTTS---BEEEEEEHHHHHHHHHCSSC------CCTTSBGGGG----
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCceEeEE---CCCC---cEEEEEeHHHHHHHhcchhh------hhhcchHHHH----
Confidence 678899999999999999999999999999 3457 89999999999987653210 0112334443
Q ss_pred cccccCCCCC------CCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 011043 352 WVPKIGEPNR------RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA 410 (495)
Q Consensus 352 ~~~~v~~~m~------~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~ 410 (495)
|. +++.++.+++++.+|++.|.+++.+++||+|++|+++|+||..||++.+
T Consensus 93 --------m~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dil~~l 149 (152)
T 2uv4_A 93 --------LQHRSHYFEGVLKCYLHETLETIINRLVEAEVHRLVVVDENDVVKGIVSLSDILQAL 149 (152)
T ss_dssp --------GGTCCHHHHTCSEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred --------HhhhhcccCCCeEECCCCcHHHHHHHHHHcCCeEEEEECCCCeEEEEEEHHHHHHHH
Confidence 54 6789999999999999999999999999999889999999999999865
No 91
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A
Probab=99.53 E-value=7.5e-14 Score=135.81 Aligned_cols=131 Identities=15% Similarity=0.245 Sum_probs=108.8
Q ss_pred HHHHHhhhccccCCCCcccCCCceeeCCCCcHHHHHHHHHhC-----CCceeeEEecCCCCCCCCeEEEEEehhhHHHHH
Q 011043 252 WKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHN-----EVATVPIIHSSSQDGSFPQLLHIASLSGILKCV 326 (495)
Q Consensus 252 ~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~~a~~~m~~~-----~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l 326 (495)
.......+.+....+|++|.++++++.+++++.+|++.|.++ +++++||+ ++++ +++|++|.+|++...
T Consensus 123 ~~~i~~~l~~~~~~v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vv---d~~~---~lvGivt~~dll~~~ 196 (278)
T 2yvy_A 123 RAEVEALARYEEDEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVV---DEKG---RLKGVLSLRDLIVAD 196 (278)
T ss_dssp HHHHHHHHHSCTTBGGGTCBSCCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEE---CTTC---BEEEEEEHHHHHHSC
T ss_pred HHHHHHHHCCCcchHHhhcCCCceEECCCCcHHHHHHHHHHccCCccceeEEEEE---CCCC---CEEEEEEHHHHhcCC
Confidence 334445566777889999999999999999999999999987 78999999 3456 899999999997520
Q ss_pred HhhhccCCCCCcccccccccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHH
Q 011043 327 CRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDI 406 (495)
Q Consensus 327 ~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl 406 (495)
...++ +++|.++++++.+++++.+|++.|.+++.+.+||||++|+++|+||..|+
T Consensus 197 -------------~~~~v------------~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivT~~Di 251 (278)
T 2yvy_A 197 -------------PRTRV------------AEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDV 251 (278)
T ss_dssp -------------TTCBS------------TTTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHH
T ss_pred -------------CCCcH------------HHHhCCCCeEEeCCCCHHHHHHHHHhcCCCEEEEEeCCCeEEEEEEHHHH
Confidence 12233 34488889999999999999999999999999999999999999999999
Q ss_pred HHHHhhc
Q 011043 407 TALAKDK 413 (495)
Q Consensus 407 ~~~~~~~ 413 (495)
+..+...
T Consensus 252 l~~i~~e 258 (278)
T 2yvy_A 252 LDVLEAE 258 (278)
T ss_dssp HHHC---
T ss_pred HHHHHHH
Confidence 9876543
No 92
>3ctu_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.81A {Streptococcus pneumoniae TIGR4} PDB: 3k6e_A
Probab=99.53 E-value=3.1e-14 Score=125.76 Aligned_cols=124 Identities=15% Similarity=0.211 Sum_probs=100.9
Q ss_pred CcccC--CCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCccccccc
Q 011043 267 GKAFP--RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPI 344 (495)
Q Consensus 267 g~~~~--~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v 344 (495)
+++|. ++++++.+++++.+|+++|.+++++.+||+ +++| +++|++|..||++++....... ......++
T Consensus 18 ~dim~p~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vv---d~~~---~~~Giit~~dl~~~~~~~~~~~---~~~~~~~v 88 (156)
T 3ctu_A 18 ETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVV---TDEK---QFVGTIGLRDIMAYQMEHDLSQ---EIMADTDI 88 (156)
T ss_dssp GGGEEEGGGCCCEETTSBHHHHHHHHTTCSSSEEEEE---CC-C---BEEEEEEHHHHHHHHHHHTCCH---HHHTTSBG
T ss_pred HHHcCcccCceEECCCCCHHHHHHHHHHCCCceEeEE---CCCC---EEEEEEcHHHHHHHHHhccccc---cccccCcH
Confidence 45777 689999999999999999999999999999 3567 8999999999998876531110 00113344
Q ss_pred ccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhc
Q 011043 345 CAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK 413 (495)
Q Consensus 345 ~~l~i~~~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~ 413 (495)
.++ |.++++++.+++++.+|++.|.+++ ++||+|++|+++|+||.+|+++.+...
T Consensus 89 ~~~------------m~~~~~~v~~~~~l~~a~~~~~~~~--~lpVvd~~g~~~Giit~~dil~~l~~~ 143 (156)
T 3ctu_A 89 VHM------------TKTDVAVVSPDFTITEVLHKLVDES--FLPVVDAEGIFQGIITRKSILKAVNAL 143 (156)
T ss_dssp GGG------------CBCSCCCBCSSCCHHHHHHHTTTSS--EEEEECTTSBEEEEEETTHHHHHHHHH
T ss_pred HHh------------ccCCceeeCCCCcHHHHHHHHHHcC--eEEEEcCCCeEEEEEEHHHHHHHHHHH
Confidence 444 8888999999999999999998876 799999899999999999999877554
No 93
>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}
Probab=99.52 E-value=9.3e-14 Score=122.69 Aligned_cols=127 Identities=14% Similarity=0.225 Sum_probs=101.5
Q ss_pred CCCcccCC--CceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCccccc
Q 011043 265 SHGKAFPR--PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKL 342 (495)
Q Consensus 265 ~~g~~~~~--~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~ 342 (495)
.++++|.+ +++++.+++++.+|++.|.+++++.+||+ ++++ +++|++|..|+++++...... ........
T Consensus 12 ~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv---d~~~---~~~Givt~~dl~~~~~~~~~~--~~~~~~~~ 83 (157)
T 2emq_A 12 TVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVL---DTSY---KLHGLISMTMMMDAILGLERI--EFERLETM 83 (157)
T ss_dssp BSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEE---CTTC---CEEEEEEHHHHHHHSBCSSSB--CGGGGGTC
T ss_pred cHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEE---cCCC---CEEEEeeHHHHHHHHhccccc--chHHhcCC
Confidence 45667876 88999999999999999999999999999 3457 899999999999765431100 00001122
Q ss_pred ccccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhc
Q 011043 343 PICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK 413 (495)
Q Consensus 343 ~v~~l~i~~~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~ 413 (495)
+ +.++|.+++.++.+++++.+|++.|.++++ +||+|++|+++|+||.+|+++.+...
T Consensus 84 ~------------v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~~g~~~Giit~~dil~~~~~~ 140 (157)
T 2emq_A 84 K------------VEEVMNRNIPRLRLDDSLMKAVGLIVNHPF--VCVENDDGYFAGIFTRREVLKQLNKQ 140 (157)
T ss_dssp B------------GGGTCBCCCCEEETTSBHHHHHHHHHHSSE--EEEECSSSSEEEEEEHHHHHHHHHHT
T ss_pred c------------HHHHhCCCCceecCCCcHHHHHHHHhhCCE--EEEEcCCCeEEEEEEHHHHHHHHHHH
Confidence 3 344488899999999999999999999987 99999889999999999999876543
No 94
>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1
Probab=99.52 E-value=2.2e-14 Score=140.16 Aligned_cols=115 Identities=15% Similarity=0.252 Sum_probs=101.3
Q ss_pred cCCCCCCCceeecCCCCHHHHHHHHHHC-----CCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHH
Q 011043 356 IGEPNRRPLAMLRPSASLSAALNLLVQA-----QVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQ 430 (495)
Q Consensus 356 v~~~m~~~~~~v~~~~sl~~a~~~m~~~-----~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~ 430 (495)
++++|.++++++.+++++.+|++.|.++ +++++||+|++|+++|+||.+|++... .+.++.++|
T Consensus 139 v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~~~lvGivt~~dll~~~----------~~~~v~~im- 207 (286)
T 2oux_A 139 AGAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVND----------DDTLIADIL- 207 (286)
T ss_dssp HHHHCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTTSC----------TTSBHHHHS-
T ss_pred HHHhCCCCceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCCCeEEEEEEHHHHHcCC----------CCCcHHHHc-
Confidence 3444988999999999999999999987 888999999899999999999997631 235777754
Q ss_pred cCCCCCCCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHhh
Q 011043 431 LGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 494 (495)
Q Consensus 431 ~~~~~~~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l~ 494 (495)
.+++++|++++++.+|++.|.+++++++||||+ +|+++|+||..||++.+.
T Consensus 208 ------------~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~-~g~lvGiIT~~Dil~~i~ 258 (286)
T 2oux_A 208 ------------NERVISVHVGDDQEDVAQTIRDYDFLAVPVTDY-DDHLLGIVTVDDIIDVID 258 (286)
T ss_dssp ------------BSCCCCEETTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHHHHHH
T ss_pred ------------CCCCeeecCCCCHHHHHHHHHHcCCcEEEEEcC-CCeEEEEEEHHHHHHHHH
Confidence 678999999999999999999999999999994 799999999999998864
No 95
>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A
Probab=99.52 E-value=1.4e-14 Score=124.22 Aligned_cols=117 Identities=17% Similarity=0.303 Sum_probs=98.0
Q ss_pred cccCCCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHH-HHHhhhccCCCCCccccccccc
Q 011043 268 KAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK-CVCRYFRHCSSSLPILKLPICA 346 (495)
Q Consensus 268 ~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~-~l~~~~~~~~~~~~~l~~~v~~ 346 (495)
++|.++++++.+++++.+|+++|.+++++.+||+ ++++ +++|++|..|+++ ++..... ....++++
T Consensus 12 ~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vv---d~~~---~~~Givt~~dl~~~~~~~~~~-------~~~~~v~~ 78 (133)
T 1y5h_A 12 DIMNAGVTCVGEHETLTAAAQYMREHDIGALPIC---GDDD---RLHGMLTDRDIVIKGLAAGLD-------PNTATAGE 78 (133)
T ss_dssp HHSEETCCCEETTSBHHHHHHHHHHHTCSEEEEE---CGGG---BEEEEEEHHHHHHTTGGGTCC-------TTTSBHHH
T ss_pred HHhcCCceEeCCCCCHHHHHHHHHHhCCCeEEEE---CCCC---eEEEEEeHHHHHHHHHhcCCC-------ccccCHHH
Confidence 4677889999999999999999999999999999 3456 8999999999984 4432210 11234444
Q ss_pred ccCcccccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 011043 347 IPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA 410 (495)
Q Consensus 347 l~i~~~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~ 410 (495)
+ |.+++.++.+++++.+|++.|.+++.+++||+|+ |+++|++|.+|+++.+
T Consensus 79 ~------------m~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-g~~~Giit~~dil~~l 129 (133)
T 1y5h_A 79 L------------ARDSIYYVDANASIQEMLNVMEEHQVRRVPVISE-HRLVGIVTEADIARHL 129 (133)
T ss_dssp H------------HTTCCCCEETTCCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHTC
T ss_pred H------------hcCCCEEECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHH
Confidence 4 7788999999999999999999999999999997 9999999999999754
No 96
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A
Probab=99.52 E-value=4.6e-14 Score=137.32 Aligned_cols=115 Identities=17% Similarity=0.279 Sum_probs=99.8
Q ss_pred cCCCCCCCceeecCCCCHHHHHHHHHHC-----CCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHH
Q 011043 356 IGEPNRRPLAMLRPSASLSAALNLLVQA-----QVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQ 430 (495)
Q Consensus 356 v~~~m~~~~~~v~~~~sl~~a~~~m~~~-----~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~ 430 (495)
++++|.++++++.+++++.+|++.|.++ +++++||+|++|+++|+||.+|++... .+.++.+
T Consensus 137 v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~~----------~~~~v~~--- 203 (278)
T 2yvy_A 137 AGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVAD----------PRTRVAE--- 203 (278)
T ss_dssp GGGTCBSCCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTTCBEEEEEEHHHHHHSC----------TTCBSTT---
T ss_pred HHhhcCCCceEECCCCcHHHHHHHHHHccCCccceeEEEEECCCCCEEEEEEHHHHhcCC----------CCCcHHH---
Confidence 3445988999999999999999999986 789999999899999999999998631 1234554
Q ss_pred cCCCCCCCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHhh
Q 011043 431 LGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 494 (495)
Q Consensus 431 ~~~~~~~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l~ 494 (495)
+|.+++++|++++++.+|++.|.+++.+.+||||+ +|+++|+||..||++.+.
T Consensus 204 ----------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~lvGivT~~Dil~~i~ 256 (278)
T 2yvy_A 204 ----------IMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDE-EGRLVGIVTVDDVLDVLE 256 (278)
T ss_dssp ----------TSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECT-TSBEEEEEEHHHHHHHC-
T ss_pred ----------HhCCCCeEEeCCCCHHHHHHHHHhcCCCEEEEEeC-CCeEEEEEEHHHHHHHHH
Confidence 55778999999999999999999999999999994 799999999999998874
No 97
>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}
Probab=99.52 E-value=4.6e-14 Score=124.81 Aligned_cols=116 Identities=14% Similarity=0.230 Sum_probs=99.4
Q ss_pred CCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccccCcc
Q 011043 272 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 351 (495)
Q Consensus 272 ~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~ 351 (495)
++++++.+++++.+|+++|.+++++.+||. + ++ +++|++|..|+++++...... ....+++++
T Consensus 21 ~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~---~-~~---~~~Givt~~dl~~~~~~~~~~------~~~~~v~~~---- 83 (157)
T 4fry_A 21 RTIYTVTKNDFVYDAIKLMAEKGIGALLVV---D-GD---DIAGIVTERDYARKVVLQERS------SKATRVEEI---- 83 (157)
T ss_dssp CCCCEEETTSBHHHHHHHHHHHTCSEEEEE---S-SS---SEEEEEEHHHHHHHSGGGTCC------SSSCBHHHH----
T ss_pred CCCeEECCCCcHHHHHHHHHHcCCCEEEEe---e-CC---EEEEEEEHHHHHHHHHhccCC------ccccCHHHH----
Confidence 567999999999999999999999999997 2 56 899999999999887653211 123455555
Q ss_pred cccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhc
Q 011043 352 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK 413 (495)
Q Consensus 352 ~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~ 413 (495)
|.+++.++.+++++.+|+++|.+++++++||+| +|+++|+||.+||++.+...
T Consensus 84 --------m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dil~~l~~~ 136 (157)
T 4fry_A 84 --------MTAKVRYVEPSQSTDECMALMTEHRMRHLPVLD-GGKLIGLISIGDLVKSVIAD 136 (157)
T ss_dssp --------SBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTT
T ss_pred --------cCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHHH
Confidence 888899999999999999999999999999999 79999999999999977654
No 98
>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1
Probab=99.51 E-value=1.7e-13 Score=130.61 Aligned_cols=143 Identities=11% Similarity=0.141 Sum_probs=104.2
Q ss_pred CCCcccCCCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCC---------
Q 011043 265 SHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSS--------- 335 (495)
Q Consensus 265 ~~g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~--------- 335 (495)
.++++|.++++++.+++++.+|+++|.+++++.+||++. .+++ +++|+||..||++++.........
T Consensus 14 ~v~diMt~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~-~~~~---~LvGiIt~~dl~~~l~~~~~~~~~~~~~~~~~~ 89 (250)
T 2d4z_A 14 QVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDT-PDTN---TLLGSIDRTEVEGLLQRRISAYRRQPAAAAEAD 89 (250)
T ss_dssp BTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESC-TTTC---BEEEEEEHHHHHHHHHHHHHTTSSSCCCCCCBC
T ss_pred ChHHhcCCCCeEECCCCCHHHHHHHHHhcCCCEEEEEec-CCCC---eEEEEEEHHHHHHHHHHhhhhhhhhhhhhhccc
Confidence 457799999999999999999999999999999999942 1246 799999999999887644211000
Q ss_pred ------------------CCccccccc--------------------------------------------------cc-
Q 011043 336 ------------------SLPILKLPI--------------------------------------------------CA- 346 (495)
Q Consensus 336 ------------------~~~~l~~~v--------------------------------------------------~~- 346 (495)
...++.... ..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (250)
T 2d4z_A 90 EEGRNGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQVASRFEE 169 (250)
T ss_dssp CC---------------------------------------------------------------------------CCS
T ss_pred ccccccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccccccccccccccccccccCccccc
Confidence 000000000 00
Q ss_pred -cc---Cccc-----cccc--C-CCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 011043 347 -IP---VGTW-----VPKI--G-EPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 412 (495)
Q Consensus 347 -l~---i~~~-----~~~v--~-~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~ 412 (495)
+. +..| ...+ . .+|.+.++++.+++++.+|..+|...|++++||++ .|+++||||++||++++..
T Consensus 170 ~i~~~~~~~~~~~~l~~~Vdl~~~~md~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~-~GrLVGIVTrkDl~kai~~ 246 (250)
T 2d4z_A 170 MLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALAEIQAAIEG 246 (250)
T ss_dssp CCBHHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHC
T ss_pred ccChhhhhhHHHHhcCceeccccccccCCCeEECCCCcHHHHHHHHHHhCCeEEEEEE-CCEEEEEEEHHHHHHHHHH
Confidence 00 0000 0112 2 25788899999999999999999999999999997 7999999999999997653
No 99
>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus}
Probab=99.50 E-value=1.9e-14 Score=157.47 Aligned_cols=80 Identities=15% Similarity=0.287 Sum_probs=67.5
Q ss_pred CceeeEEEE--ecCCCceEEEEEccCCCCCC-CCCCcccCCCCeEEEEEEeCCceEEEEEEECCEEe--eCCCCC---ee
Q 011043 23 TVLIPMRFV--WPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWR--HDEHQP---FI 94 (495)
Q Consensus 23 ~~~~~~~f~--~~~~~~~V~v~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~l~~g~~~ykf~vdg~w~--~d~~~~---~~ 94 (495)
...++|+|+ |+.+|++|+|+||||+|++. .+|.+. +|.|++++.||||.|||||+|||+|+ +||++| ++
T Consensus 15 ~~~~~v~f~~~~~~~~~~v~~~G~Fn~w~~~~~~~~~~---~~~~~~~~~L~~g~~~y~f~vdg~~~~~~d~~~~~~~y~ 91 (696)
T 4aee_A 15 KGRYIVKFTRHWPQYAKNIYLIGEFTSLYPGFVKLRKI---EEQGIVYLKLWPGEYGYGFQIDNDFENVLDPDNEEKKCV 91 (696)
T ss_dssp EEEEEEEEEEECCTTCSCEEEEETTSCSSTTSCBCEEE---TTEEEEEEEECSEEEEEEEEETTCCSCCCCTTCCCEEEE
T ss_pred CCcEEEEEEEECCCCCcEEEEEEecCCCCCCCcceEec---CCeEEEEEEcCCceEEEEEEECCEEeecCCCCCCccccc
Confidence 345666666 55589999999999999874 577663 79999999999999999999999999 778777 47
Q ss_pred eCCCCCeeeEE
Q 011043 95 SSEYGIVNTVL 105 (495)
Q Consensus 95 ~~~~g~~nn~~ 105 (495)
.|++|..|++.
T Consensus 92 ~~~~g~~n~~~ 102 (696)
T 4aee_A 92 HTSFFPEYKKC 102 (696)
T ss_dssp ECSSCTTSEEE
T ss_pred ccCCcccccee
Confidence 89999999985
No 100
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}
Probab=99.50 E-value=5.5e-14 Score=127.00 Aligned_cols=140 Identities=19% Similarity=0.288 Sum_probs=99.4
Q ss_pred CcccCC--CceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhcc--CCCCCccccc
Q 011043 267 GKAFPR--PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRH--CSSSLPILKL 342 (495)
Q Consensus 267 g~~~~~--~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~--~~~~~~~l~~ 342 (495)
+++|.+ +++++.+++++.+|+++|.+++++.+||+ ++++ +++|++|..||+++....... .....+....
T Consensus 7 ~dim~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVv---d~~~---~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~ 80 (180)
T 3sl7_A 7 GDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVI---DDNW---TLVGVVSDYDLLALDSISGRSQNDTNLFPDVDS 80 (180)
T ss_dssp HHHSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEE---CTTC---BEEEEEEHHHHTCC-------------------
T ss_pred HHhcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEE---CCCC---eEEEEEEHHHHHhhhhhccccCCcccccccccc
Confidence 346776 79999999999999999999999999999 4567 899999999998532211000 0000000000
Q ss_pred cc------ccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 011043 343 PI------CAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 412 (495)
Q Consensus 343 ~v------~~l~i~~~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~ 412 (495)
.. ..+........++++|.++++++.+++++.+|+++|.+++++++||+|++|+++|+||.+||++.+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dil~~~~~ 156 (180)
T 3sl7_A 81 TWKTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAALQ 156 (180)
T ss_dssp CCCSHHHHHHHHHTTTTCBHHHHSEESCCCEETTSBHHHHHHHHTTSTTCEEEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred hhhhhHHHHHHHhccccccHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHHH
Confidence 00 00000001113444588889999999999999999999999999999999999999999999986643
No 101
>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}
Probab=99.50 E-value=8.4e-14 Score=123.77 Aligned_cols=125 Identities=13% Similarity=0.154 Sum_probs=98.6
Q ss_pred CcccCCCceeeCCCCcHHHHHHHHHhCCCceeeEEecCC-CCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccc
Q 011043 267 GKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSS-QDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPIC 345 (495)
Q Consensus 267 g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~-~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~ 345 (495)
+++|.++++++.+++++.+|+++|.+++++.+||++ + +++ +++|++|..|+++++....... ......++.
T Consensus 16 ~dim~~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd--~~~~~---~~~Givt~~dl~~~~~~~~~~~---~~~~~~~v~ 87 (164)
T 2pfi_A 16 EHFMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVE--STESQ---ILVGIVQRAQLVQALQAEPPSR---APGHQQCLQ 87 (164)
T ss_dssp HHHCBCCCCCEETTCBHHHHHHHHHTCCCSEEEEES--CTTTC---BEEEEEEHHHHHHHHHC----------CCCCBHH
T ss_pred HHHcCCCCeEECCCCcHHHHHHHHHhCCCCceeEEe--cCCCC---EEEEEEEHHHHHHHHHhhcccc---CCcccchhh
Confidence 346888999999999999999999999999999993 2 357 8999999999998775321110 011123333
Q ss_pred cccCcccccccCCCCCCC------ceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 011043 346 AIPVGTWVPKIGEPNRRP------LAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 412 (495)
Q Consensus 346 ~l~i~~~~~~v~~~m~~~------~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~ 412 (495)
++ |..+ +.++.+++++.+|++.|.+++.+++||+| +|+++|+||.+||++.+..
T Consensus 88 ~~------------m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~l~Giit~~dil~~~~~ 147 (164)
T 2pfi_A 88 DI------------LARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTS-RGRAVGCVSWVEMKKAISN 147 (164)
T ss_dssp HH------------HHTTCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHHHHHH
T ss_pred hh------------hcccccccCCceEECCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEHHHHHHHHHh
Confidence 33 3333 78899999999999999999999999999 7999999999999987654
No 102
>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1
Probab=99.49 E-value=1.6e-13 Score=134.02 Aligned_cols=127 Identities=17% Similarity=0.233 Sum_probs=108.6
Q ss_pred HhhhccccCCCCcccCCCceeeCCCCcHHHHHHHHHhC-----CCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhh
Q 011043 256 KAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHN-----EVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYF 330 (495)
Q Consensus 256 ~~~~~~~~~~~g~~~~~~~i~v~~~~sl~~a~~~m~~~-----~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~ 330 (495)
...+.++...+|++|.++++++.+++++.+|++.|.++ +++.+||+ ++++ +++|++|..|+++.
T Consensus 129 ~~ll~~~~~~v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVv---d~~~---~lvGivt~~dll~~----- 197 (286)
T 2oux_A 129 KELLHYEDETAGAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVV---DQEN---HLVGVISLRDLIVN----- 197 (286)
T ss_dssp HHHTTSCTTBHHHHCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEE---CTTC---BEEEEEEHHHHTTS-----
T ss_pred HHHhcCChHHHHHhCCCCceEECCCCcHHHHHHHHHHcccCccceeEEEEE---cCCC---eEEEEEEHHHHHcC-----
Confidence 33445677788999999999999999999999999987 88999999 3457 89999999998742
Q ss_pred ccCCCCCcccccccccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 011043 331 RHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA 410 (495)
Q Consensus 331 ~~~~~~~~~l~~~v~~l~i~~~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~ 410 (495)
....+++++ |.++++++.+++++.+|++.|.+++.+++||+|++|+++|+||..|++..+
T Consensus 198 --------~~~~~v~~i------------m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIT~~Dil~~i 257 (286)
T 2oux_A 198 --------DDDTLIADI------------LNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVI 257 (286)
T ss_dssp --------CTTSBHHHH------------SBSCCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHH
T ss_pred --------CCCCcHHHH------------cCCCCeeecCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHH
Confidence 013345555 888899999999999999999999999999999999999999999999876
Q ss_pred hhc
Q 011043 411 KDK 413 (495)
Q Consensus 411 ~~~ 413 (495)
...
T Consensus 258 ~~e 260 (286)
T 2oux_A 258 DDE 260 (286)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 103
>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1
Probab=99.49 E-value=5.8e-14 Score=124.50 Aligned_cols=124 Identities=8% Similarity=0.147 Sum_probs=99.4
Q ss_pred cccCC--CceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccc
Q 011043 268 KAFPR--PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPIC 345 (495)
Q Consensus 268 ~~~~~--~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~ 345 (495)
++|.+ +++++.+++++.+|+++|.+++++.+||+ ++++ +++|++|..||++++...... ........++.
T Consensus 18 ~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVv---d~~~---~lvGivt~~dl~~~~~~~~~~--~~~~~~~~~v~ 89 (159)
T 1yav_A 18 QFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVL---DPSY---RLHGLIGTNMIMNSIFGLERI--EFEKLDQITVE 89 (159)
T ss_dssp HHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEE---CTTC---BEEEEEEHHHHHHHHBCSSSB--CGGGTTTSBHH
T ss_pred HHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEE---CCCC---CEEEEeEHHHHHHHhhhhccc--chhhhccCCHH
Confidence 35666 78999999999999999999999999999 4567 899999999999876532100 00001233444
Q ss_pred cccCcccccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhc
Q 011043 346 AIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK 413 (495)
Q Consensus 346 ~l~i~~~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~ 413 (495)
++ |.+++.++.+++++.+|++.|.++++ +||+|++|+++|+||++|+++.+...
T Consensus 90 ~~------------m~~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~~g~~vGiit~~dil~~~~~~ 143 (159)
T 1yav_A 90 EV------------MLTDIPRLHINDPIMKGFGMVINNGF--VCVENDEQVFEGIFTRRVVLKELNKH 143 (159)
T ss_dssp HH------------SBCSCCEEETTSBHHHHHHHTTTCSE--EEEECTTCBEEEEEEHHHHHHHHHHH
T ss_pred Hh------------cCCCCceEcCCCCHHHHHHHHHhCCE--EEEEeCCCeEEEEEEHHHHHHHHHHH
Confidence 44 88889999999999999999998876 99999899999999999999876543
No 104
>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*
Probab=99.48 E-value=2.9e-13 Score=122.84 Aligned_cols=141 Identities=10% Similarity=0.106 Sum_probs=102.7
Q ss_pred cccCCC----ceee--CCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCC----
Q 011043 268 KAFPRP----LVYA--GPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSL---- 337 (495)
Q Consensus 268 ~~~~~~----~i~v--~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~---- 337 (495)
++|.+. ++++ .+++++.+|+++|.+++++.+||++. ++++ +++|++|..|+++.+...........
T Consensus 15 dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~-d~~~---~lvGiit~~dl~~~~~~~~~~~~~~~~~~~ 90 (185)
T 2j9l_A 15 DVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVS-RESQ---RLVGFVLRRDLIISIENARKKQDGVVSTSI 90 (185)
T ss_dssp HHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESC-TTTC---BEEEEEEHHHHHHHHHHHHTSCSCCCTTCE
T ss_pred HHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEE-CCCC---eEEEEEEHHHHHHHHHhhcccCCCccccce
Confidence 456665 7888 99999999999999999999999931 2456 89999999999988765321100000
Q ss_pred ccccccccccc-CcccccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhc
Q 011043 338 PILKLPICAIP-VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK 413 (495)
Q Consensus 338 ~~l~~~v~~l~-i~~~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~ 413 (495)
..+.....+.. .......++++|.++++++.+++++.+|++.|.+++.+++||+| +|+++|+||++||++.+...
T Consensus 91 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd-~g~~vGiit~~dll~~l~~~ 166 (185)
T 2j9l_A 91 IYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHIAQM 166 (185)
T ss_dssp EECSSSCCCCCTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHHH
T ss_pred eecccCCcccccccccCccHHHhhCcCCeEeCCCCCHHHHHHHHHhCCCcEEEEEE-CCEEEEEEEHHHHHHHHHHh
Confidence 00000000000 00011234556888899999999999999999999999999999 89999999999999876543
No 105
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=99.48 E-value=3.9e-13 Score=140.22 Aligned_cols=164 Identities=15% Similarity=0.214 Sum_probs=125.7
Q ss_pred EEeehHHHHHHHHHHhcCCCCCChhhHhhhhHHHHHHHHhhhccccCCCCcccCCCceeeCCCCcHHHHHHHHHhC----
Q 011043 218 GVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHN---- 293 (495)
Q Consensus 218 Gilt~~Dii~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~~a~~~m~~~---- 293 (495)
.-++..|+.+++..+.........+-+......+.......+.++...+|++|.++++++.+++++.+|++.|.++
T Consensus 109 ~~l~~dd~~~ll~~l~~~~~~~~~~ll~~l~~~~~~~i~~~l~~~~~~v~~iM~~~~v~v~~~~tv~ea~~~~~~~~~~~ 188 (473)
T 2zy9_A 109 EELSLDDLADALQAVRKEDPAYFQRLKDLLDPRTRAEVEALARYEEDEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDA 188 (473)
T ss_dssp HHSCHHHHHHHHHHHHHSCHHHHHHHTTSSCHHHHHHHHHHHTSCTTBSTTTCBSCEEEECTTCBHHHHHHHHHHHGGGC
T ss_pred HhCCHHHHHHHHHhCCHhHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCHHHhCCCCceEeCCCCcHHHHHHHHHhccCCc
Confidence 3356667777776654321001112222333344445556667788899999999999999999999999999986
Q ss_pred -CCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccccCcccccccCCCCCCCceeecCCCC
Q 011043 294 -EVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSAS 372 (495)
Q Consensus 294 -~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~~~m~~~~~~v~~~~s 372 (495)
+++++||++ +++ +++|++|.+|++.. . ...+++++ |.++++++.++++
T Consensus 189 ~~~~~ipVvd---~~~---~lvGiVt~~Dll~~------~-------~~~~v~di------------m~~~~~~v~~~~~ 237 (473)
T 2zy9_A 189 ETIYYIYVVD---EKG---RLKGVLSLRDLIVA------D-------PRTRVAEI------------MNPKVVYVRTDTD 237 (473)
T ss_dssp SEEEEEEEEC---TTS---BEEEEEEHHHHHHS------C-------TTSBGGGT------------SBSSCCCEESSSB
T ss_pred CceeEEEEEC---CCC---cEEEEEEHHHHhcC------C-------CCCcHHHH------------hCCCCeEEeCCCc
Confidence 589999993 456 89999999999752 0 12345544 8889999999999
Q ss_pred HHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 011043 373 LSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 412 (495)
Q Consensus 373 l~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~ 412 (495)
+.++++.|.+++...+||+|++|+++|+||.+|+++....
T Consensus 238 l~ea~~~m~~~~~~~lpVVDe~g~lvGiIT~~Dil~~i~~ 277 (473)
T 2zy9_A 238 QEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEA 277 (473)
T ss_dssp HHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcEEEEEcCCCEEEEEEehHhhHHHHHH
Confidence 9999999999999999999999999999999999986644
No 106
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=99.45 E-value=2e-13 Score=144.59 Aligned_cols=121 Identities=17% Similarity=0.235 Sum_probs=102.9
Q ss_pred ccCCCCCCCceeecCC-CCHHHHHHHHHHCCCCEEEEEc-CCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcC
Q 011043 355 KIGEPNRRPLAMLRPS-ASLSAALNLLVQAQVSSIPIVD-DNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLG 432 (495)
Q Consensus 355 ~v~~~m~~~~~~v~~~-~sl~~a~~~m~~~~~~~lpVvd-~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~ 432 (495)
+++++|.++++++.++ +++.+|+++|.+++++++||+| ++++++|+||.+||++.+..+.. ..+.++.+
T Consensus 385 ~V~diM~~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~~~~~----~~~~~V~~----- 455 (527)
T 3pc3_A 385 AIAELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSMNR----QQSDPAIK----- 455 (527)
T ss_dssp BGGGGCCCCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHHHHCC----CTTSBGGG-----
T ss_pred cHHHhCcCCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHHhccC----cCCCcHHH-----
Confidence 5667799999999999 9999999999999999999999 78999999999999986644311 12356666
Q ss_pred CCCCCCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCC---CCeEEEEEehHHHHHHhh
Q 011043 433 QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAG---SKRVEGIVSLSDIFKFLL 494 (495)
Q Consensus 433 ~~~~~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~---~~~lvGiIs~~DIl~~l~ 494 (495)
+|+++++++.+++++.+++++|.++++ +||||++ .|+++||||+.||++++.
T Consensus 456 --------im~~~~~~v~~~~~l~~a~~~m~~~~~--~pVVd~~~~~~g~lvGIVT~~Dll~~l~ 510 (527)
T 3pc3_A 456 --------ALNKRVIRLNESEILGKLARVLEVDPS--VLILGKNPAGKVELKALATKLDVTTFIA 510 (527)
T ss_dssp --------GEETTCCEEETTSBHHHHHHHHTTCSE--EEEEEECSSSCEEEEEEEEHHHHHHHHH
T ss_pred --------HhcCCCeEECCCCcHHHHHHHHhhCCE--EEEEeCCcccCCeEEEEEEHHHHHHHHH
Confidence 457889999999999999999987775 6999941 389999999999999985
No 107
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=99.39 E-value=8.6e-13 Score=137.58 Aligned_cols=116 Identities=17% Similarity=0.280 Sum_probs=101.3
Q ss_pred ccCCCCCCCceeecCCCCHHHHHHHHHHC-----CCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHH
Q 011043 355 KIGEPNRRPLAMLRPSASLSAALNLLVQA-----QVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQAL 429 (495)
Q Consensus 355 ~v~~~m~~~~~~v~~~~sl~~a~~~m~~~-----~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l 429 (495)
+++++|.++++++.+++++.+|++.|.++ +++++||+|++++++|++|.+|++... .+.++.+
T Consensus 156 ~v~~iM~~~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~~~lvGiVt~~Dll~~~----------~~~~v~d-- 223 (473)
T 2zy9_A 156 EAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVAD----------PRTRVAE-- 223 (473)
T ss_dssp BSTTTCBSCEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTTSBEEEEEEHHHHHHSC----------TTSBGGG--
T ss_pred CHHHhCCCCceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCCCcEEEEEEHHHHhcCC----------CCCcHHH--
Confidence 34566999999999999999999999986 578999999889999999999998621 1356666
Q ss_pred HcCCCCCCCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHhh
Q 011043 430 QLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 494 (495)
Q Consensus 430 ~~~~~~~~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l~ 494 (495)
+|.++++++++++++.+|++.|.+++.+.+||||+ +|+++|+||..||++.+.
T Consensus 224 -----------im~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe-~g~lvGiIT~~Dil~~i~ 276 (473)
T 2zy9_A 224 -----------IMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDE-EGRLVGIVTVDDVLDVLE 276 (473)
T ss_dssp -----------TSBSSCCCEESSSBHHHHHHHHHHHTCSEEEEECT-TSBEEEEEEHHHHHHHHH
T ss_pred -----------HhCCCCeEEeCCCcHHHHHHHHHhcCCcEEEEEcC-CCEEEEEEehHhhHHHHH
Confidence 45778999999999999999999999999999994 799999999999998763
No 108
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}
Probab=99.37 E-value=2.1e-13 Score=147.32 Aligned_cols=137 Identities=14% Similarity=0.054 Sum_probs=101.4
Q ss_pred ccCCCCC--CCceeecCCCCHHHHHHHHH-HCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccc-cCc---------cc
Q 011043 355 KIGEPNR--RPLAMLRPSASLSAALNLLV-QAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYA-HIN---------LS 421 (495)
Q Consensus 355 ~v~~~m~--~~~~~v~~~~sl~~a~~~m~-~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~-~l~---------~~ 421 (495)
+++++|. +++.++.+++++.++.+.|. +++++++||+|++++++|+||++|+++........ ... ..
T Consensus 454 ~V~diM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~~~~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~ 533 (632)
T 3org_A 454 TAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDANGYLLGAISRKEIVDRLQHVLEDVPEPIAGHRTLVLLD 533 (632)
T ss_dssp BHHHHCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCTTCBBCCEESHHHHTTTTTTC------------------
T ss_pred cHHHHhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEecCCeEEEEEEHHHHHHHHHHHhhhcccccccccceeccC
Confidence 4567798 88999999999999999999 79999999999999999999999999765432100 000 00
Q ss_pred ccC----HHHHHHcC----------------CCCCCCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEE
Q 011043 422 EMT----IHQALQLG----------------QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVE 481 (495)
Q Consensus 422 ~~~----v~~~l~~~----------------~~~~~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lv 481 (495)
... +....... ...+.-.++|+++++++++++++.+|++.|.+++++++||+| +|+++
T Consensus 534 ~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~~pitV~~~~~l~ea~~~M~~~~i~~lpVve--~G~lv 611 (632)
T 3org_A 534 AADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVTE--RGKLV 611 (632)
T ss_dssp -------------------------------------CCSCCCCCCEEETTCBHHHHHHHHHHTCCSEEEEEE--TTEEE
T ss_pred HHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcCCCceecCCCcHHHHHHHHHhcCCCEEEEEE--CCEEE
Confidence 000 01110000 000012348999999999999999999999999999999996 59999
Q ss_pred EEEehHHHHHHh
Q 011043 482 GIVSLSDIFKFL 493 (495)
Q Consensus 482 GiIs~~DIl~~l 493 (495)
||||++||++++
T Consensus 612 GIVT~~Dll~~~ 623 (632)
T 3org_A 612 GIVEREDVAYGY 623 (632)
T ss_dssp EEEEGGGTEECC
T ss_pred EEEehhhHHHHH
Confidence 999999998764
No 109
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=99.36 E-value=3.3e-12 Score=134.05 Aligned_cols=113 Identities=18% Similarity=0.309 Sum_probs=100.0
Q ss_pred CCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcC--CCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCC
Q 011043 358 EPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDD--NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDS 435 (495)
Q Consensus 358 ~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~--~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~ 435 (495)
+.|..+++++.+++++.+++++|.+++++++||+|+ +++++|+||.+|+... . ..+.++.++|
T Consensus 117 ~~m~~d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~~~lvGiVt~rDl~~~---~------~~~~~V~~vM------ 181 (511)
T 3usb_A 117 SGVISDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDMRFI---Q------DYSIKISDVM------ 181 (511)
T ss_dssp SCSSSSCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTTCBEEEEEEHHHHTTC---C------CSSSBHHHHC------
T ss_pred cccccCCEEECCCCCHHHHHHHHHHcCCcEEEEEecCCCCEEEEEEEehHhhhh---c------cCCCcHHHhc------
Confidence 337778899999999999999999999999999998 8999999999999641 1 1246788755
Q ss_pred CCCccccCC-cceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHh
Q 011043 436 YSPYELRSQ-RCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 493 (495)
Q Consensus 436 ~~~~~~m~~-~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l 493 (495)
++ +++++++++++.++++.|.+++++.+||||+ +|+++|+||+.||++.+
T Consensus 182 -------~~~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe-~g~l~GiIT~~Dil~~~ 232 (511)
T 3usb_A 182 -------TKEQLITAPVGTTLSEAEKILQKYKIEKLPLVDN-NGVLQGLITIKDIEKVI 232 (511)
T ss_dssp -------CCCCCCCEETTCCHHHHHHHHHHHTCSEEEEECT-TSBEEEEEEHHHHHHHH
T ss_pred -------ccCCCEEECCCCCHHHHHHHHHHcCCCEEEEEeC-CCCEeeeccHHHHHHhh
Confidence 55 8899999999999999999999999999995 79999999999999876
No 110
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=99.31 E-value=4.9e-12 Score=133.97 Aligned_cols=124 Identities=14% Similarity=0.144 Sum_probs=103.7
Q ss_pred CCCCcccCCCceeeCCC-CcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCccccc
Q 011043 264 DSHGKAFPRPLVYAGPN-DNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKL 342 (495)
Q Consensus 264 ~~~g~~~~~~~i~v~~~-~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~ 342 (495)
..++++|.++++++.++ +++.+|+++|.+++++++||++ .+++ +++|+||.+||++.+..... ....
T Consensus 384 ~~V~diM~~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd--~~~g---~lvGiVt~~Dll~~l~~~~~-------~~~~ 451 (527)
T 3pc3_A 384 LAIAELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVD--QDDG---SVLGVVGQETLITQIVSMNR-------QQSD 451 (527)
T ss_dssp SBGGGGCCCCCSCCEETTCBHHHHHHHHHHHTCSEEEEEC--TTTC---CEEEEEEHHHHHHHHHHHCC-------CTTS
T ss_pred CcHHHhCcCCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEE--CCCC---EEEEEEEHHHHHHHHHhccC-------cCCC
Confidence 34678999999999999 9999999999999999999992 2466 89999999999988765311 1234
Q ss_pred ccccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCC----CcEEEEEeHHHHHHHHhhc
Q 011043 343 PICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN----DSLLDIYCRSDITALAKDK 413 (495)
Q Consensus 343 ~v~~l~i~~~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~----g~lvGivs~~Dl~~~~~~~ 413 (495)
++.++ |.++++++.+++++.+++++|.+++ .+||||++ |+++|+||+.||++.+...
T Consensus 452 ~V~~i------------m~~~~~~v~~~~~l~~a~~~m~~~~--~~pVVd~~~~~~g~lvGIVT~~Dll~~l~~~ 512 (527)
T 3pc3_A 452 PAIKA------------LNKRVIRLNESEILGKLARVLEVDP--SVLILGKNPAGKVELKALATKLDVTTFIAAG 512 (527)
T ss_dssp BGGGG------------EETTCCEEETTSBHHHHHHHHTTCS--EEEEEEECSSSCEEEEEEEEHHHHHHHHHTC
T ss_pred cHHHH------------hcCCCeEECCCCcHHHHHHHHhhCC--EEEEEeCCcccCCeEEEEEEHHHHHHHHHhc
Confidence 55555 8889999999999999999997665 47999974 8999999999999977654
No 111
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=99.29 E-value=3.5e-11 Score=126.22 Aligned_cols=117 Identities=16% Similarity=0.258 Sum_probs=99.5
Q ss_pred cccCCCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccc
Q 011043 268 KAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAI 347 (495)
Q Consensus 268 ~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l 347 (495)
..|..+++++.+++|+.+|+++|.+++++++||++.. .++ +++|++|.+|++. . .....++.++
T Consensus 117 ~~m~~d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g-~~~---~lvGiVt~rDl~~------~------~~~~~~V~~v 180 (511)
T 3usb_A 117 SGVISDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNL-DER---KLVGIITNRDMRF------I------QDYSIKISDV 180 (511)
T ss_dssp SCSSSSCCCBCTTSBHHHHHHHHHHHCCSEEEEESCT-TTC---BEEEEEEHHHHTT------C------CCSSSBHHHH
T ss_pred cccccCCEEECCCCCHHHHHHHHHHcCCcEEEEEecC-CCC---EEEEEEEehHhhh------h------ccCCCcHHHh
Confidence 4578889999999999999999999999999999310 156 8999999999853 0 1123455555
Q ss_pred cCcccccccCCCCCC-CceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 011043 348 PVGTWVPKIGEPNRR-PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 412 (495)
Q Consensus 348 ~i~~~~~~v~~~m~~-~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~ 412 (495)
|.+ +++++.+++++.+++++|.+++++.+||||++|+++|+||.+|+++....
T Consensus 181 ------------M~~~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~g~l~GiIT~~Dil~~~~~ 234 (511)
T 3usb_A 181 ------------MTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVIEF 234 (511)
T ss_dssp ------------CCCCCCCCEETTCCHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred ------------cccCCCEEECCCCCHHHHHHHHHHcCCCEEEEEeCCCCEeeeccHHHHHHhhhc
Confidence 887 89999999999999999999999999999999999999999999987643
No 112
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1
Probab=99.28 E-value=1.6e-11 Score=129.03 Aligned_cols=114 Identities=21% Similarity=0.315 Sum_probs=99.7
Q ss_pred CCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEc--CCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCC
Q 011043 358 EPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVD--DNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDS 435 (495)
Q Consensus 358 ~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd--~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~ 435 (495)
++|.++++++.+++++.++++.|.+++++++||+| ++++++|+||.+|++... . .+.++.+
T Consensus 94 ~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~lvGivt~~Dl~~~~--~-------~~~~v~~-------- 156 (491)
T 1zfj_A 94 NGVIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFIS--D-------YNAPISE-------- 156 (491)
T ss_dssp TTTSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCS--C-------SSSBTTT--------
T ss_pred hcCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCCCEEEEEEEHHHHhhhc--c-------CCCcHHH--------
Confidence 34888899999999999999999999999999999 789999999999998531 0 1344554
Q ss_pred CCCccccCC-cceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHhh
Q 011043 436 YSPYELRSQ-RCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 494 (495)
Q Consensus 436 ~~~~~~m~~-~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l~ 494 (495)
+|.+ +++++++++++.++++.|.+++++++||||+ +|+++|+||..||++.+.
T Consensus 157 -----im~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~-~g~lvGivt~~Dil~~~~ 210 (491)
T 1zfj_A 157 -----HMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDN-SGRLSGLITIKDIEKVIE 210 (491)
T ss_dssp -----SCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECT-TSBEEEEEEHHHHHHHHH
T ss_pred -----HcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEEHHHHHHHHh
Confidence 5566 7899999999999999999999999999994 799999999999998764
No 113
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=99.25 E-value=1.5e-12 Score=136.18 Aligned_cols=113 Identities=16% Similarity=0.276 Sum_probs=85.4
Q ss_pred CCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCCC
Q 011043 358 EPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYS 437 (495)
Q Consensus 358 ~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~ 437 (495)
++|..+++++.+++++.+++++|.+++++++||+|++++++|+||.+|++.. . ..+.++.++
T Consensus 93 ~~m~~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~~~lvGiVt~rDL~~~---~------~~~~~v~di--------- 154 (496)
T 4fxs_A 93 AGVVTHPVTVRPEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRDVRFV---T------DLTKSVAAV--------- 154 (496)
T ss_dssp C--CBCCCCBCSSSBHHHHHHHHTSSCCCEEEEECSSSBEEEEEEHHHHTTC---C------CTTSBGGGT---------
T ss_pred cccccCceEECCCCCHHHHHHHHHHcCCcEEEEEccCCEEEEEEEHHHHhhc---c------cCCCcHHHH---------
Confidence 3477889999999999999999999999999999989999999999998621 0 123566664
Q ss_pred CccccC-C-cceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHh
Q 011043 438 PYELRS-Q-RCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 493 (495)
Q Consensus 438 ~~~~m~-~-~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l 493 (495)
|+ + +++++++++++.+++++|.+++++.+||||+ +|+++|+||+.||++..
T Consensus 155 ----M~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe-~G~l~GiIT~~DIl~~~ 207 (496)
T 4fxs_A 155 ----MTPKERLATVKEGATGAEVQEKMHKARVEKILVVND-EFQLKGMITAKDFHKAE 207 (496)
T ss_dssp ----SEEGGGCCEEECC----CGGGTCC---CCCEEEECT-TSBCCEEECCC-----C
T ss_pred ----hcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCCEEEeehHhHHHHhh
Confidence 45 3 5899999999999999999999999999995 79999999999999863
No 114
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=99.23 E-value=9.5e-13 Score=138.38 Aligned_cols=115 Identities=17% Similarity=0.354 Sum_probs=4.7
Q ss_pred CCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCC
Q 011043 357 GEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSY 436 (495)
Q Consensus 357 ~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~ 436 (495)
+++|.++++++.+++++.+|+++|.+++++.+||+|++++++|+||.+|++... . .+.++.++|
T Consensus 98 ~~iM~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~lvGivt~~Dl~~~~-~--------~~~~v~~im------- 161 (494)
T 1vrd_A 98 ENGIIYDPITVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDVRFEK-N--------LSKKIKDLM------- 161 (494)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhcCccCCeEECCCCCHHHHHHHHHHcCceEEEEEcCCCEEEEEEEHHHHHhhc-C--------CCCcHHHHh-------
Confidence 344888899999999999999999999999999999889999999999998631 1 135666654
Q ss_pred CCccccCC--cceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHhh
Q 011043 437 SPYELRSQ--RCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 494 (495)
Q Consensus 437 ~~~~~m~~--~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l~ 494 (495)
++ +++++.+++++.+++++|.+++++++||||+ +|+++|+||..||++.+.
T Consensus 162 ------~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~-~g~lvGiIt~~Dll~~~~ 214 (494)
T 1vrd_A 162 ------TPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSK-DNKLVGLITIKDIMSVIE 214 (494)
T ss_dssp ------------------------------------------------------CHHHHT
T ss_pred ------CCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcC-CCeEEEEEEHHHHHhhhc
Confidence 55 7899999999999999999999999999995 799999999999999864
No 115
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=99.23 E-value=9.2e-13 Score=138.35 Aligned_cols=113 Identities=12% Similarity=0.156 Sum_probs=0.0
Q ss_pred CCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCC---CcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCC
Q 011043 360 NRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN---DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSY 436 (495)
Q Consensus 360 m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~---g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~ 436 (495)
|.++++++.+++++.+++++|.+++++++||+|++ ++++|+||.+|++.. .. ..+.++.++|
T Consensus 103 M~~~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~~g~lvGiVt~~Dl~~~-~~-------~~~~~V~diM------- 167 (503)
T 1me8_A 103 FVVSDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRDYPID-LT-------QTETKVSDMM------- 167 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccCCeEECCCCcHHHHHHHHHHcCceEEEEEECCCcCCeEEEEEEHHHHHhh-hc-------cccCcHHHHh-------
Confidence 66788999999999999999999999999999987 899999999999864 11 1235666655
Q ss_pred CCccccCCc--ceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHhh
Q 011043 437 SPYELRSQR--CQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 494 (495)
Q Consensus 437 ~~~~~m~~~--~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l~ 494 (495)
.++ ++++++++++.+|+++|.+++++.+||||+ +|+++|+||..||++.+.
T Consensus 168 ------~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe-~g~lvGiIT~~Dil~~~~ 220 (503)
T 1me8_A 168 ------TPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDD-DQHLRYIVFRKDYDRSQV 220 (503)
T ss_dssp ------------------------------------------------------------
T ss_pred ------CCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEecHHHHhhh
Confidence 555 999999999999999999999999999995 799999999999998764
No 116
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=99.21 E-value=1.3e-12 Score=136.39 Aligned_cols=112 Identities=17% Similarity=0.292 Sum_probs=0.4
Q ss_pred CCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCCC
Q 011043 358 EPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYS 437 (495)
Q Consensus 358 ~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~ 437 (495)
++|..+++++.+++++.+++++|.+++++++||+| +++++|+||.+|+..... .+.++.++|
T Consensus 92 ~~m~~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd-~g~lvGIVt~rDl~~~~~---------~~~~V~~vM-------- 153 (490)
T 4avf_A 92 TAIVRDPVTVTPSTKIIELLQMAREYGFSGFPVVE-QGELVGIVTGRDLRVKPN---------AGDTVAAIM-------- 153 (490)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred cCcccCceEeCCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEhHHhhhccc---------cCCcHHHHh--------
Confidence 34777889999999999999999999999999999 899999999999964211 135667655
Q ss_pred CccccC-C-cceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHh
Q 011043 438 PYELRS-Q-RCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 493 (495)
Q Consensus 438 ~~~~m~-~-~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l 493 (495)
+ + +++++++++++.+|+++|.+++++.+||||+ +|+++|+||+.||++.+
T Consensus 154 -----tp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe-~g~lvGiIT~~Dil~~~ 205 (490)
T 4avf_A 154 -----TPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDE-NFYLRGLVTFRDIEKAK 205 (490)
T ss_dssp ----------------------------------------------------------
T ss_pred -----ccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEehHHhhhhc
Confidence 5 3 6899999999999999999999999999994 79999999999999864
No 117
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}
Probab=99.17 E-value=1.9e-11 Score=132.09 Aligned_cols=137 Identities=15% Similarity=0.101 Sum_probs=99.7
Q ss_pred CCcccC--CCceeeCCCCcHHHHHHHHH-hCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCC-----
Q 011043 266 HGKAFP--RPLVYAGPNDNLKDVARKIL-HNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSL----- 337 (495)
Q Consensus 266 ~g~~~~--~~~i~v~~~~sl~~a~~~m~-~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~----- 337 (495)
++++|. ++++++++++++.++++.|. +++.+++||+| +++ +++|++|.+|+++.+...........
T Consensus 455 V~diM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd---~~~---~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~ 528 (632)
T 3org_A 455 AREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVID---ANG---YLLGAISRKEIVDRLQHVLEDVPEPIAGHRT 528 (632)
T ss_dssp HHHHCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBC---TTC---BBCCEESHHHHTTTTTTC-------------
T ss_pred HHHHhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEe---cCC---eEEEEEEHHHHHHHHHHHhhhcccccccccc
Confidence 456888 89999999999999999999 79999999993 466 89999999999977654321100000
Q ss_pred ------ccccccccccc-----------------CcccccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCC
Q 011043 338 ------PILKLPICAIP-----------------VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN 394 (495)
Q Consensus 338 ------~~l~~~v~~l~-----------------i~~~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~ 394 (495)
..+.+.+..+. +-...+.+.++|+++++++++++++.+++++|.+++++++||+ ++
T Consensus 529 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~~pitV~~~~~l~ea~~~M~~~~i~~lpVv-e~ 607 (632)
T 3org_A 529 LVLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVT-ER 607 (632)
T ss_dssp ------------------------------------------CCSCCCCCCEEETTCBHHHHHHHHHHTCCSEEEEE-ET
T ss_pred eeccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcCCCceecCCCcHHHHHHHHHhcCCCEEEEE-EC
Confidence 00000011100 0011123678899999999999999999999999999999999 68
Q ss_pred CcEEEEEeHHHHHHH
Q 011043 395 DSLLDIYCRSDITAL 409 (495)
Q Consensus 395 g~lvGivs~~Dl~~~ 409 (495)
|+++|+||++|+++.
T Consensus 608 G~lvGIVT~~Dll~~ 622 (632)
T 3org_A 608 GKLVGIVEREDVAYG 622 (632)
T ss_dssp TEEEEEEEGGGTEEC
T ss_pred CEEEEEEehhhHHHH
Confidence 999999999999764
No 118
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=99.15 E-value=3.1e-12 Score=134.37 Aligned_cols=153 Identities=16% Similarity=0.158 Sum_probs=18.4
Q ss_pred cCCCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCC---CCCCeEEEEEehhhHHHHHHhhhccCCCCCccccccccc
Q 011043 270 FPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQD---GSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICA 346 (495)
Q Consensus 270 ~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~---g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~ 346 (495)
|.++++++.+++|+.+|+++|.+++++++||++ ++ + +++|++|.+|++.. . .....++++
T Consensus 103 M~~~~~~v~~~~tv~eal~~m~~~~~s~~pVvd---~~~~~g---~lvGiVt~~Dl~~~--~---------~~~~~~V~d 165 (503)
T 1me8_A 103 FVVSDSNVKPDQTFADVLAISQRTTHNTVAVTD---DGTPHG---VLLGLVTQRDYPID--L---------TQTETKVSD 165 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccCCeEECCCCcHHHHHHHHHHcCceEEEEEE---CCCcCC---eEEEEEEHHHHHhh--h---------ccccCcHHH
Confidence 778899999999999999999999999999994 33 6 89999999999753 0 011234444
Q ss_pred ccCcccccccCCCCCCC--ceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccC
Q 011043 347 IPVGTWVPKIGEPNRRP--LAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMT 424 (495)
Q Consensus 347 l~i~~~~~~v~~~m~~~--~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~ 424 (495)
+ |.++ ++++.+++++.+|+++|.+++++.+||+|++|+++|+||.+||++.......
T Consensus 166 i------------M~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~~~~~--------- 224 (503)
T 1me8_A 166 M------------MTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKDYDRSQVCHNE--------- 224 (503)
T ss_dssp --------------------------------------------------------------------CCC---------
T ss_pred H------------hCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEecHHHHhhhcccc---------
Confidence 4 8877 9999999999999999999999999999999999999999999986543211
Q ss_pred HHHHHHcCCCCCCCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEE
Q 011043 425 IHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVI 472 (495)
Q Consensus 425 v~~~l~~~~~~~~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~V 472 (495)
..+.. ..++ ....+.. ....+.++.|.+.+++.+.|
T Consensus 225 ~~d~~---------~~l~--v~a~v~~-~~~~e~~~~l~e~gv~~l~V 260 (503)
T 1me8_A 225 LVDSQ---------KRYL--VGAGINT-RDFRERVPALVEAGADVLCI 260 (503)
T ss_dssp CBCTT---------SCBC--CEEEECS-SSHHHHHHHHHHHTCSEEEE
T ss_pred hhccc---------cccc--cccccCc-hhHHHHHHHHHhhhccceEE
Confidence 01100 0011 1123444 66667788888888886544
No 119
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1
Probab=99.14 E-value=4.9e-10 Score=117.63 Aligned_cols=117 Identities=16% Similarity=0.254 Sum_probs=99.2
Q ss_pred cccCCCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccc
Q 011043 268 KAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAI 347 (495)
Q Consensus 268 ~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l 347 (495)
++|..+++++.+++++.+|+++|.+++++++||++. .+++ +++|++|.+|++... ....++
T Consensus 94 ~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~-~~~~---~lvGivt~~Dl~~~~------------~~~~~v--- 154 (491)
T 1zfj_A 94 NGVIIDPFFLTPEHKVSEAEELMQRYRISGVPIVET-LANR---KLVGIITNRDMRFIS------------DYNAPI--- 154 (491)
T ss_dssp TTTSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESC-TTTC---BEEEEEEHHHHHHCS------------CSSSBT---
T ss_pred hcCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEe-CCCC---EEEEEEEHHHHhhhc------------cCCCcH---
Confidence 368889999999999999999999999999999931 0456 899999999997420 012333
Q ss_pred cCcccccccCCCCCC-CceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 011043 348 PVGTWVPKIGEPNRR-PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 412 (495)
Q Consensus 348 ~i~~~~~~v~~~m~~-~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~ 412 (495)
.++|.+ +++++.+++++.++++.|.+++++.+||+|++|+++|++|..|+++....
T Consensus 155 ---------~~im~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGivt~~Dil~~~~~ 211 (491)
T 1zfj_A 155 ---------SEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEF 211 (491)
T ss_dssp ---------TTSCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred ---------HHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHHHHHHhc
Confidence 344887 88999999999999999999999999999999999999999999987653
No 120
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=99.10 E-value=9.2e-12 Score=127.39 Aligned_cols=109 Identities=22% Similarity=0.288 Sum_probs=0.0
Q ss_pred CCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcC---CCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCC
Q 011043 360 NRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDD---NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSY 436 (495)
Q Consensus 360 m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~---~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~ 436 (495)
|..+++++.++.++.+|+++|.+++++.+||+|+ +++|+||||.+|+... + .+.++.++|
T Consensus 144 ~i~dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~rf~--d--------~~~~V~evM------- 206 (556)
T 4af0_A 144 FITDPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQFQ--D--------AETPIKSVM------- 206 (556)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCCCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCCEEEEEEeccccccc--c--------cceEhhhhc-------
Confidence 4457889999999999999999999999999986 6799999999998642 1 125667654
Q ss_pred CCccccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHH
Q 011043 437 SPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 492 (495)
Q Consensus 437 ~~~~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~ 492 (495)
++++++++...++.+|.++|.++++..|||||+ +++|+|+||+.|+++.
T Consensus 207 ------T~~lvt~~~~~~leeA~~iL~~~kieklpVVd~-~g~LvGlIT~kDi~k~ 255 (556)
T 4af0_A 207 ------TTEVVTGSSPITLEKANSLLRETKKGKLPIVDS-NGHLVSLVARSDLLKN 255 (556)
T ss_dssp --------------------------------------------------------
T ss_pred ------ccceEEecCCCCHHHHHHHHHHccccceeEEcc-CCcEEEEEEechhhhh
Confidence 778999999999999999999999999999995 7999999999999875
No 121
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=99.06 E-value=6.3e-11 Score=123.85 Aligned_cols=114 Identities=18% Similarity=0.214 Sum_probs=84.4
Q ss_pred CcccCCCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCccccccccc
Q 011043 267 GKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICA 346 (495)
Q Consensus 267 g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~ 346 (495)
+.+|..+++++.+++++.+|+++|.+++++++||++ +++ +++|++|.+|++. .. ....++.+
T Consensus 92 ~~~m~~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd---~~~---~lvGiVt~rDL~~------~~------~~~~~v~d 153 (496)
T 4fxs_A 92 EAGVVTHPVTVRPEQTIADVMELTHYHGFAGFPVVT---ENN---ELVGIITGRDVRF------VT------DLTKSVAA 153 (496)
T ss_dssp CC--CBCCCCBCSSSBHHHHHHHHTSSCCCEEEEEC---SSS---BEEEEEEHHHHTT------CC------CTTSBGGG
T ss_pred ccccccCceEECCCCCHHHHHHHHHHcCCcEEEEEc---cCC---EEEEEEEHHHHhh------cc------cCCCcHHH
Confidence 346888999999999999999999999999999993 456 8999999999851 11 12334444
Q ss_pred ccCcccccccCCCCC-C-CceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 011043 347 IPVGTWVPKIGEPNR-R-PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA 410 (495)
Q Consensus 347 l~i~~~~~~v~~~m~-~-~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~ 410 (495)
+ |. + +++++.+++++.+++++|.++++..+||||++|+++|+||.+|+++..
T Consensus 154 i------------M~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~G~l~GiIT~~DIl~~~ 207 (496)
T 4fxs_A 154 V------------MTPKERLATVKEGATGAEVQEKMHKARVEKILVVNDEFQLKGMITAKDFHKAE 207 (496)
T ss_dssp T------------SEEGGGCCEEECC----CGGGTCC---CCCEEEECTTSBCCEEECCC-----C
T ss_pred H------------hcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEeehHhHHHHhh
Confidence 4 77 3 589999999999999999999999999999999999999999999854
No 122
>4aef_A Neopullulanase (alpha-amylase II); hydrolase, thermostability, high temperature; 2.34A {Pyrococcus furiosus}
Probab=99.06 E-value=2.5e-10 Score=123.88 Aligned_cols=78 Identities=24% Similarity=0.427 Sum_probs=63.8
Q ss_pred eeeEEEEecCCCceEEEEEccCCCCCC-CCCCcccCCCCeEEEEEEeCCceEEEEEEECCEEeeCCCCCe----eeCCCC
Q 011043 25 LIPMRFVWPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWRHDEHQPF----ISSEYG 99 (495)
Q Consensus 25 ~~~~~f~~~~~~~~V~v~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~l~~g~~~ykf~vdg~w~~d~~~~~----~~~~~g 99 (495)
..-|.|.||.+|+.|+|.|+||+|.+. .+|++ .++.|.+++.||||.|+|||+|||+|..||.+|. ..++.+
T Consensus 16 ~~~~~~~~~~~~~~~yl~G~Fn~w~~~~~~m~~---~g~~~~~~v~L~~G~y~Y~f~vdg~~~~dp~n~~~~~~~~~~~~ 92 (645)
T 4aef_A 16 VAEVEFSLIREGSYAYLLGDFNAFNEGSFRMEQ---EGKNWKIKIALPEGVWHYAFSIDGKFVLDPDNPERRVYTRKGYK 92 (645)
T ss_dssp EEEEEEEEECCSSCEEEEETTTTTCTTSSEEEE---CSSEEEEEEEECSEEEEEEEEETTEEECCTTCCCEEEEEEGGGT
T ss_pred EEEEEEecCCCCeEEEEEEcCCCCCCCcccceE---cCCEEEEEEEeCCceEEEEEEECCeEecCCCCCCcccccccCcC
Confidence 457889999999999999999999984 45654 4689999999999999999999999999999984 344444
Q ss_pred CeeeEE
Q 011043 100 IVNTVL 105 (495)
Q Consensus 100 ~~nn~~ 105 (495)
..+.+.
T Consensus 93 ~~~~~~ 98 (645)
T 4aef_A 93 FHREVN 98 (645)
T ss_dssp EEEEEE
T ss_pred ccccee
Confidence 444443
No 123
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=99.06 E-value=2.5e-11 Score=124.26 Aligned_cols=113 Identities=24% Similarity=0.328 Sum_probs=0.0
Q ss_pred cCCCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccccC
Q 011043 270 FPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPV 349 (495)
Q Consensus 270 ~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i 349 (495)
|..+++++.|+.|+.+|+++|.+++++.+||++....++ +++||+|.+|+. +. + ...+|+++
T Consensus 144 ~i~dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~---kLvGIvT~RD~r-f~-d-----------~~~~V~ev-- 205 (556)
T 4af0_A 144 FITDPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDS---KLLGIVTGRDVQ-FQ-D-----------AETPIKSV-- 205 (556)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCCCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCC---EEEEEEeccccc-cc-c-----------cceEhhhh--
Confidence 567789999999999999999999999999995323356 899999999973 21 1 12445544
Q ss_pred cccccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 011043 350 GTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA 410 (495)
Q Consensus 350 ~~~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~ 410 (495)
|.++++++..+.++.+|.++|.++++..+||||++++|+|+||++|+.+..
T Consensus 206 ----------MT~~lvt~~~~~~leeA~~iL~~~kieklpVVd~~g~LvGlIT~kDi~k~~ 256 (556)
T 4af0_A 206 ----------MTTEVVTGSSPITLEKANSLLRETKKGKLPIVDSNGHLVSLVARSDLLKNQ 256 (556)
T ss_dssp -------------------------------------------------------------
T ss_pred ----------cccceEEecCCCCHHHHHHHHHHccccceeEEccCCcEEEEEEechhhhhh
Confidence 999999999999999999999999999999999999999999999998754
No 124
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=99.04 E-value=3.3e-12 Score=134.83 Aligned_cols=116 Identities=21% Similarity=0.247 Sum_probs=67.0
Q ss_pred CCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcC---CCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCC
Q 011043 357 GEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDD---NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQ 433 (495)
Q Consensus 357 ~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~---~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~ 433 (495)
+++|.++++++.+++++.+|+++|.+++++.+||+|+ +++++|+||.+|+...... ....++.++|
T Consensus 111 ~~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~~~~~-------~~~~~v~~vm---- 179 (514)
T 1jcn_A 111 EQGFITDPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFLAEK-------DHTTLLSEVM---- 179 (514)
T ss_dssp CTTSCSSCCCCCC-----------------CEESCC--------CCEECTTTTC--------------------------
T ss_pred hhccccCCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHhhhhc-------cCCCCHHHHh----
Confidence 3447778899999999999999999999999999997 5899999999998763210 1134566644
Q ss_pred CCCCCccccCC--cceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHh
Q 011043 434 DSYSPYELRSQ--RCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 493 (495)
Q Consensus 434 ~~~~~~~~m~~--~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l 493 (495)
.+ +++++.+++++.+++++|.+++++.+||||+ +|+++|+||++||++.+
T Consensus 180 ---------~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~-~g~lvGiIt~~Dll~~~ 231 (514)
T 1jcn_A 180 ---------TPRIELVVAPAGVTLKEANEILQRSKKGKLPIVND-CDELVAIIARTDLKKNR 231 (514)
T ss_dssp ----------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEESS-SSCCC----CCCCSSCC
T ss_pred ---------CCCCCCeEECCCCCHHHHHHHHHHcCCCcccEECC-CCeEEEEEEHHHHHHHh
Confidence 55 7899999999999999999999999999995 79999999999998754
No 125
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=99.01 E-value=1.2e-10 Score=121.54 Aligned_cols=114 Identities=18% Similarity=0.202 Sum_probs=0.9
Q ss_pred CcccCCCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCccccccccc
Q 011043 267 GKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICA 346 (495)
Q Consensus 267 g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~ 346 (495)
+.+|..+++++.+++++.+|+++|.+++++++||++ ++ +++|++|.+|+... . ....++.+
T Consensus 91 ~~~m~~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd----~g---~lvGIVt~rDl~~~-~-----------~~~~~V~~ 151 (490)
T 4avf_A 91 ETAIVRDPVTVTPSTKIIELLQMAREYGFSGFPVVE----QG---ELVGIVTGRDLRVK-P-----------NAGDTVAA 151 (490)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred ccCcccCceEeCCCCcHHHHHHHHHHhCCCEEEEEE----CC---EEEEEEEhHHhhhc-c-----------ccCCcHHH
Confidence 346888899999999999999999999999999993 56 89999999998521 1 11234444
Q ss_pred ccCcccccccCCCCC-C-CceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 011043 347 IPVGTWVPKIGEPNR-R-PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK 411 (495)
Q Consensus 347 l~i~~~~~~v~~~m~-~-~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~ 411 (495)
+ |. + +++++.+++++.+|+++|.++++..+||+|++|+++|+||++|+++...
T Consensus 152 v------------Mtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~ 206 (490)
T 4avf_A 152 I------------MTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDENFYLRGLVTFRDIEKAKT 206 (490)
T ss_dssp -------------------------------------------------------------------
T ss_pred H------------hccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHhhhhcc
Confidence 4 87 4 6899999999999999999999999999999999999999999998653
No 126
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1
Probab=98.99 E-value=4.9e-11 Score=124.87 Aligned_cols=108 Identities=17% Similarity=0.353 Sum_probs=0.0
Q ss_pred CCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHHHcCCCCCCCc
Q 011043 360 NRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPY 439 (495)
Q Consensus 360 m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~ 439 (495)
|..+++++.+++++.++++.|.+++++++||+|+ ++++|+|+.+|++. . .+.++.++|
T Consensus 99 m~~~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~-~~lvGivt~~Dl~~---~--------~~~~v~~im---------- 156 (486)
T 2cu0_A 99 IVEDVITIAPDETVDFALFLMEKHGIDGLPVVED-EKVVGIITKKDIAA---R--------EGKLVKELM---------- 156 (486)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccCceEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHhcc---C--------CCCCHHHHc----------
Confidence 6678899999999999999999999999999987 99999999999875 1 124566654
Q ss_pred cccCCcceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHh
Q 011043 440 ELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 493 (495)
Q Consensus 440 ~~m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l 493 (495)
.++++++++++++.++++.|.+++++.+||||+ +|+++|+||..||++.+
T Consensus 157 ---~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVde-~g~lvGiiT~~Dil~~~ 206 (486)
T 2cu0_A 157 ---TKEVITVPESIEVEEALKIMIENRIDRLPVVDE-RGKLVGLITMSDLVARK 206 (486)
T ss_dssp ------------------------------------------------------
T ss_pred ---cCCCeEECCcCcHHHHHHHHHHcCCCEEEEEec-CCeEEEEEEHHHHHHhh
Confidence 567889999999999999999999999999994 79999999999999865
No 127
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=98.96 E-value=7.3e-11 Score=123.97 Aligned_cols=115 Identities=17% Similarity=0.282 Sum_probs=4.9
Q ss_pred cccCCCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCcccccccccc
Q 011043 268 KAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAI 347 (495)
Q Consensus 268 ~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l 347 (495)
++|.++++++.+++++.+|+++|.+++++.+||++ +++ +++|++|..|+++. . ....++.+
T Consensus 99 ~iM~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd---~~~---~lvGivt~~Dl~~~-~-----------~~~~~v~~- 159 (494)
T 1vrd_A 99 NGIIYDPITVTPDMTVKEAIDLMAEYKIGGLPVVD---EEG---RLVGLLTNRDVRFE-K-----------NLSKKIKD- 159 (494)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hcCccCCeEECCCCCHHHHHHHHHHcCceEEEEEc---CCC---EEEEEEEHHHHHhh-c-----------CCCCcHHH-
Confidence 46888999999999999999999999999999993 456 89999999999742 0 01233444
Q ss_pred cCcccccccCCCCCC--CceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 011043 348 PVGTWVPKIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 412 (495)
Q Consensus 348 ~i~~~~~~v~~~m~~--~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~ 412 (495)
+|.+ +++++.+++++.+++++|.++++..+||||++|+++|+||..|+++....
T Consensus 160 -----------im~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~~ 215 (494)
T 1vrd_A 160 -----------LMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSVIEH 215 (494)
T ss_dssp ------------------------------------------------------------CHHHHTC
T ss_pred -----------HhCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHhhhcc
Confidence 4887 89999999999999999999999999999999999999999999987643
No 128
>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}
Probab=98.78 E-value=1e-08 Score=77.26 Aligned_cols=62 Identities=16% Similarity=0.334 Sum_probs=49.1
Q ss_pred ceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHH
Q 011043 364 LAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQAL 429 (495)
Q Consensus 364 ~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l 429 (495)
++++.+++++.+|+++|.+++++++||+| +|+++|++|.+|+++.+.... .+..+.+++++|
T Consensus 2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d-~~~lvGIvT~~Di~~~~~~~~---~~~~~~~V~~iM 63 (70)
T 3ghd_A 2 AIVVQPKDTVDRVAKILSRNKAGSAVVME-GDEILGVVTERDILDKVVAKG---KNPKEVKVEEIM 63 (70)
T ss_dssp EEEECTTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHHHTTTTT---CCGGGCBGGGTC
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHhcC---CCcccCCHHHhc
Confidence 57899999999999999999999999998 689999999999986443221 123345677643
No 129
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=98.77 E-value=2.6e-10 Score=120.30 Aligned_cols=117 Identities=21% Similarity=0.276 Sum_probs=67.6
Q ss_pred CcccCCCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCC--CCCCCeEEEEEehhhHHHHHHhhhccCCCCCccccccc
Q 011043 267 GKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQ--DGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPI 344 (495)
Q Consensus 267 g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~--~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v 344 (495)
.++|.++++++.+++++.+|+++|.+++++.+||++ +. ++ +++|++|.+|+..... .....++
T Consensus 111 ~~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd--~~~~~~---~lvGiVt~~Dl~~~~~----------~~~~~~v 175 (514)
T 1jcn_A 111 EQGFITDPVVLSPSHTVGDVLEAKMRHGFSGIPITE--TGTMGS---KLVGIVTSRDIDFLAE----------KDHTTLL 175 (514)
T ss_dssp CTTSCSSCCCCCC-----------------CEESCC-------------CCEECTTTTC---------------------
T ss_pred hhccccCCEEECCCCCHHHHHHHHHhcCCCEEEEEe--CCCcCC---EEEEEEEHHHHHhhhh----------ccCCCCH
Confidence 456888899999999999999999999999999994 22 46 8999999999864210 0112334
Q ss_pred ccccCcccccccCCCCCC--CceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 011043 345 CAIPVGTWVPKIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA 410 (495)
Q Consensus 345 ~~l~i~~~~~~v~~~m~~--~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~ 410 (495)
. ++|.+ +++++.+++++.+++++|.++++..+||||++|+++|+||++|+++..
T Consensus 176 ~------------~vm~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~ 231 (514)
T 1jcn_A 176 S------------EVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDLKKNR 231 (514)
T ss_dssp -----------------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEESSSSCCC----CCCCSSCC
T ss_pred H------------HHhCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEECCCCeEEEEEEHHHHHHHh
Confidence 3 34887 899999999999999999999999999999999999999999988643
No 130
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1
Probab=98.76 E-value=9.5e-10 Score=115.05 Aligned_cols=110 Identities=15% Similarity=0.309 Sum_probs=0.4
Q ss_pred ccCCCceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhhccCCCCCccccccccccc
Q 011043 269 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIP 348 (495)
Q Consensus 269 ~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ 348 (495)
.|..+++++.+++++.+++++|.+++++++||++ + + +++|+++.+|++. . ...++.++
T Consensus 98 ~m~~~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd---~-~---~lvGivt~~Dl~~---~-----------~~~~v~~i- 155 (486)
T 2cu0_A 98 LIVEDVITIAPDETVDFALFLMEKHGIDGLPVVE---D-E---KVVGIITKKDIAA---R-----------EGKLVKEL- 155 (486)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccCceEECCCCCHHHHHHHHHHcCCcEEEEEE---C-C---EEEEEEEHHHhcc---C-----------CCCCHHHH-
Confidence 5778899999999999999999999999999993 3 6 8999999999874 1 02234443
Q ss_pred CcccccccCCCCCCCceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 011043 349 VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK 411 (495)
Q Consensus 349 i~~~~~~v~~~m~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~ 411 (495)
|.++++++.+++++.+++++|.+++++.+||+|++|+++|++|.+||++...
T Consensus 156 -----------m~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVde~g~lvGiiT~~Dil~~~~ 207 (486)
T 2cu0_A 156 -----------MTKEVITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLITMSDLVARKK 207 (486)
T ss_dssp --------------------------------------------------------------C
T ss_pred -----------ccCCCeEECCcCcHHHHHHHHHHcCCCEEEEEecCCeEEEEEEHHHHHHhhh
Confidence 8878899999999999999999999999999999999999999999998653
No 131
>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}
Probab=98.74 E-value=2.1e-08 Score=75.55 Aligned_cols=48 Identities=19% Similarity=0.364 Sum_probs=42.9
Q ss_pred ceeeCCCCcHHHHHHHHHhCCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHh
Q 011043 274 LVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCR 328 (495)
Q Consensus 274 ~i~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~g~~~~lvGils~~dIl~~l~~ 328 (495)
++++.|++|+.+|+++|.+++++++||++ ++ +++||+|.+||++.+..
T Consensus 2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d----~~---~lvGIvT~~Di~~~~~~ 49 (70)
T 3ghd_A 2 AIVVQPKDTVDRVAKILSRNKAGSAVVME----GD---EILGVVTERDILDKVVA 49 (70)
T ss_dssp EEEECTTCBHHHHHHHHHHTTCSEEEEEE----TT---EEEEEEEHHHHHHHTTT
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEEE----CC---EEEEEEEHHHHHHHHHh
Confidence 68999999999999999999999999993 46 89999999999876543
No 132
>3fio_A A cystathionine beta-synthase domain protein fused to A Zn-ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} PDB: 3ghd_A
Probab=98.45 E-value=3.2e-07 Score=68.63 Aligned_cols=62 Identities=16% Similarity=0.333 Sum_probs=49.5
Q ss_pred ceeecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCcccccCHHHHH
Q 011043 364 LAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQAL 429 (495)
Q Consensus 364 ~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivs~~Dl~~~~~~~~~~~l~~~~~~v~~~l 429 (495)
++++.+++++.+|++.|.+++++++||+|+ |+++|++|.+|+++.+..... ...+.++.++|
T Consensus 2 ~~~v~~~~~~~~a~~~m~~~~~~~~pV~d~-~~l~Givt~~dl~~~~~~~~~---~~~~~~v~~im 63 (70)
T 3fio_A 2 AIVVQPKDTVDRVAKILSRNKAGSAVVMEG-DEILGVVTERDILDKVVAKGK---NPKEVKVEEIM 63 (70)
T ss_dssp EEEECTTCBHHHHHHHHHHTTCSEEEEEET-TEEEEEEEHHHHHHHTTTTTC---CGGGCBGGGTC
T ss_pred CeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHHHcCC---CcccCCHHHhc
Confidence 568999999999999999999999999997 999999999999987543321 11235566644
No 133
>3fio_A A cystathionine beta-synthase domain protein fused to A Zn-ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} PDB: 3ghd_A
Probab=98.40 E-value=7.2e-07 Score=66.64 Aligned_cols=47 Identities=26% Similarity=0.452 Sum_probs=43.9
Q ss_pred ceEecCCCCHHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHHHhh
Q 011043 446 CQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 494 (495)
Q Consensus 446 ~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~~l~ 494 (495)
+.++.+++++.+|++.|.+++++++||+| + |+++|+||.+||++++.
T Consensus 2 ~~~v~~~~~~~~a~~~m~~~~~~~~pV~d-~-~~l~Givt~~dl~~~~~ 48 (70)
T 3fio_A 2 AIVVQPKDTVDRVAKILSRNKAGSAVVME-G-DEILGVVTERDILDKVV 48 (70)
T ss_dssp EEEECTTCBHHHHHHHHHHTTCSEEEEEE-T-TEEEEEEEHHHHHHHTT
T ss_pred CeEECCCCcHHHHHHHHHHcCCCEEEEEE-C-CEEEEEEEHHHHHHHHH
Confidence 67899999999999999999999999999 4 99999999999999863
No 134
>2z0b_A GDE5, KIAA1434, putative glycerophosphodiester phosphodiesterase; CBM20 domain, starch-binding, hydrolase, STR genomics, NPPSFA; 2.00A {Homo sapiens}
Probab=98.32 E-value=1.1e-06 Score=74.49 Aligned_cols=57 Identities=18% Similarity=0.358 Sum_probs=46.0
Q ss_pred eeeEEEEecC---CCceEEEEEc---cCCCCCC--CCCCccc--CCCCeEEEEEEeCCc-eEEEEEEE
Q 011043 25 LIPMRFVWPY---GGRSVFLSGS---FNRWSEL--LPMSPVE--GCPTVFQIIWSIPPG-YHQYKFCV 81 (495)
Q Consensus 25 ~~~~~f~~~~---~~~~V~v~Gs---f~~W~~~--~~m~~~~--~~~~~~~~~~~l~~g-~~~ykf~v 81 (495)
.+.++|.-.. .++.|+|+|+ +-+|++. ++|.+.+ .....|++++.||+| .++|||++
T Consensus 8 ~v~V~F~v~~~~~~ge~v~vvGs~~~LG~W~p~~av~L~~~~~~~~~~~W~~~v~lp~~~~~eYKyvi 75 (131)
T 2z0b_A 8 PSQVAFEIRGTLLPGEVFAICGSCDALGNWNPQNAVALLPENDTGESMLWKATIVLSRGVSVQYRYFK 75 (131)
T ss_dssp CEEEEEEEECCCCTTCEEEEEESSGGGTTTCGGGCEECEECCTTCCSSEEEEEEEECTTCCEEEEEEE
T ss_pred eEEEEEEEeeecCCCCEEEEEeCCCcCCCCCccccccccccccCCCCCeEEEEEEcCCCCcEEEEEEE
Confidence 4677777544 3789999999 8999973 5887751 147899999999998 69999998
No 135
>1ac0_A Glucoamylase; hydrolase, starch binding domain; HET: GLC BGC GLO; NMR {Aspergillus niger} SCOP: b.3.1.1 PDB: 1acz_A* 1kul_A 1kum_A
Probab=97.81 E-value=1.2e-05 Score=65.87 Aligned_cols=58 Identities=21% Similarity=0.436 Sum_probs=44.8
Q ss_pred eeeEEEEecC---CCceEEEEEccC---CCCC--CCCCCcccC--CCCeEEEEEEeCCc-eEEEEEEEC
Q 011043 25 LIPMRFVWPY---GGRSVFLSGSFN---RWSE--LLPMSPVEG--CPTVFQIIWSIPPG-YHQYKFCVD 82 (495)
Q Consensus 25 ~~~~~f~~~~---~~~~V~v~Gsf~---~W~~--~~~m~~~~~--~~~~~~~~~~l~~g-~~~ykf~vd 82 (495)
.+.++|.-.+ .|++|+|+|+.. +|++ .++|.+... .++.|++++.||+| .++|||++.
T Consensus 6 ~v~V~F~v~~~t~~Ge~v~vvGs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~~~eYKy~v~ 74 (108)
T 1ac0_A 6 AVAVTFDLTATTTYGENIYLVGSISQLGDWETSDGIALSADKYTSSDPLWYVTVTLPAGESFEYKFIRI 74 (108)
T ss_dssp CCCEEEEEECCCCSSCCEECCCSSSTTCSSSGGGSCCBBCSSSSSSCSSCEEEECCCSSSCEECCCEEC
T ss_pred eEEEEEEEeeECCCCCEEEEEeCcHHHCCCCHHHCccccccccCCcCCeEEEEEEeCCCCeEEEEEEEE
Confidence 3677777554 378999999864 8996 368877521 35899999999998 599999993
No 136
>3c8d_A Enterochelin esterase; alpha-beta-alpha sandwich, IROD, iron aquisition, structural genomics, PSI-2, protein structure initiative; HET: CIT; 1.80A {Shigella flexneri 2a str} SCOP: b.1.18.20 c.69.1.2 PDB: 2b20_A 3c87_A* 3c8h_A 3mga_A*
Probab=97.57 E-value=0.00018 Score=73.07 Aligned_cols=86 Identities=16% Similarity=0.248 Sum_probs=64.7
Q ss_pred eeeEEEEecCC-C-------ceEEEE--EccC---CCCCCCCCCcccCCCCeEEEEEEeCCceE-EEEEEEC--------
Q 011043 25 LIPMRFVWPYG-G-------RSVFLS--GSFN---RWSELLPMSPVEGCPTVFQIIWSIPPGYH-QYKFCVD-------- 82 (495)
Q Consensus 25 ~~~~~f~~~~~-~-------~~V~v~--Gsf~---~W~~~~~m~~~~~~~~~~~~~~~l~~g~~-~ykf~vd-------- 82 (495)
...++|.|... | ++|+|. |..+ +|.+ .+|+|.. ..|+|+.++.|+++-| .|.|+||
T Consensus 30 ~~~vtF~~~~p~a~~~~~~~~~V~~~~~~~~d~~~~~~~-~~m~r~~-~~~~W~~t~~l~~~~~~~Y~~~~~~~~~~~~~ 107 (403)
T 3c8d_A 30 MFEVTFWWRDPQGSEEYSTIKRVWVYITGVTDHHQNSQP-QSMQRIA-GTDVWQWTTQLNANWRGSYCFIPTERDDIFSA 107 (403)
T ss_dssp EEEEEEEEECTTCSTTTCCCCEEEEEETTTC-------C-CBCEECT-TSSEEEEEEEEETTCEEEEEEEEESCCSTTCC
T ss_pred cEEEEEEeeCCCcccccCccceEEEECcCCCccccccCc-cccccCC-CCCeEEEEEEECCCcEEEEEEEecCccccccc
Confidence 45799999865 4 689998 3222 1222 4788853 4799999999999999 9999999
Q ss_pred ----------------CEEeeCCCCCeeeCC-CCCeeeEEEecCCCC
Q 011043 83 ----------------GEWRHDEHQPFISSE-YGIVNTVLLATEPNF 112 (495)
Q Consensus 83 ----------------g~w~~d~~~~~~~~~-~g~~nn~~~v~~~~~ 112 (495)
|..+.||.||..... .|...|++.+.+...
T Consensus 108 ~~~~~~~~r~~w~~~~~~~~~DP~n~~~~~~~~~~~~s~~~~p~~~~ 154 (403)
T 3c8d_A 108 PSPDRLELREGWRKLLPQAIADPLNPQSWKGGLGHAVSALEMPQAPL 154 (403)
T ss_dssp C--CHHHHHHHHHHHGGGCBCCTTCSSEECCSSSSCEEEEECTTCCC
T ss_pred ccchHHHHHHHHHHhhcccccCCCCCCCCCCCCCcccccccCCCCCc
Confidence 778899999976543 478889999987533
No 137
>1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta sandwich, transferase; 2.30A {Escherichia coli} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 3o7y_A* 3o7z_A*
Probab=97.57 E-value=0.00018 Score=77.35 Aligned_cols=67 Identities=24% Similarity=0.428 Sum_probs=53.3
Q ss_pred eEEEE-ecCCCceEEEEEccCCCCC-CCCCCcccCCCCeEEEEEE-eCCceEEEEEEE---CCEE--eeCCCCCeee
Q 011043 27 PMRFV-WPYGGRSVFLSGSFNRWSE-LLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCV---DGEW--RHDEHQPFIS 95 (495)
Q Consensus 27 ~~~f~-~~~~~~~V~v~Gsf~~W~~-~~~m~~~~~~~~~~~~~~~-l~~g~~~ykf~v---dg~w--~~d~~~~~~~ 95 (495)
-++|+ |...|++|.|+|+|++|.. .++|.+. +..|.|++.++ +.+|. .|+|.| ||++ +.||.+....
T Consensus 26 gv~F~vwAP~A~~V~L~gdfn~~~~~~~~M~~~-~~~GvW~~~v~~~~~g~-~Y~f~i~~~~g~~~~~~DPya~~~~ 100 (617)
T 1m7x_A 26 GTRFSVWAPNARRVSVVGQFNYWDGRRHPMRLR-KESGIWELFIPGAHNGQ-LYKYEMIDANGNLRLKSDPYAFEAQ 100 (617)
T ss_dssp EEEEEEECSSCSCEEEEEGGGTSCTTTCBCCCC-TTTTEEEEEEETCCTTC-EEEEEEECTTSCEEEECCTTCSSEE
T ss_pred cEEEEEECCCCCEEEEEEEeCCCCCceeEeEEC-CCCCEEEEEEcCCCCCC-EEEEEEEcCCCcEEEecCccceeec
Confidence 57787 9999999999999999975 4689863 24799999997 77787 499999 6764 6777776554
No 138
>3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis H37RV, mesophilic human pathogen, RV1326C gene, glycosyl transferase; 2.33A {Mycobacterium tuberculosis}
Probab=97.54 E-value=0.00014 Score=79.04 Aligned_cols=66 Identities=33% Similarity=0.600 Sum_probs=52.3
Q ss_pred eEEEE-ecCCCceEEEEEccCCCCCC-CCCCcccCCCCeEEEEEE-eCCceEEEEEEE---CCEE--eeCCCCCee
Q 011043 27 PMRFV-WPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWS-IPPGYHQYKFCV---DGEW--RHDEHQPFI 94 (495)
Q Consensus 27 ~~~f~-~~~~~~~V~v~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~-l~~g~~~ykf~v---dg~w--~~d~~~~~~ 94 (495)
-++|+ |...|++|.|+|+||+|+.. .||.+. +..|+|++.++ +.+|. .|||.| ||+| +.||-+...
T Consensus 137 g~~F~vwAP~A~~V~l~gdfn~w~~~~~~m~~~-~~~GvW~~~i~~~~~g~-~Y~y~i~~~~g~~~~~~DPya~~~ 210 (722)
T 3k1d_A 137 GVSFAVWAPNAKGVSLIGEFNGWNGHEAPMRVL-GPSGVWELFWPDFPCDG-LYKFRVHGADGVVTDRADPFAFGT 210 (722)
T ss_dssp EEEEEEECTTCSEEEEEEGGGTTCCCSCBCEEC-GGGCEEEEEEETCCTTC-EEEEEEECTTSCEEEECCTTCSSB
T ss_pred eEEEEEECCCCCEEEEEeecCCCCCCcccCEEc-CCCCEEEEEeCCCCCCC-EEEEEEEcCCCcEEEeecccceee
Confidence 47888 99999999999999999864 689764 23699999987 77884 588888 5654 678777654
No 139
>3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A
Probab=97.54 E-value=0.00014 Score=79.63 Aligned_cols=64 Identities=25% Similarity=0.447 Sum_probs=50.6
Q ss_pred eEEEE-ecCCCceEEEEEccCCCCCC-CCCCcccCCCCeEEEEEE-------eCCceEEEEEEEC---CEE--eeCCCCC
Q 011043 27 PMRFV-WPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWS-------IPPGYHQYKFCVD---GEW--RHDEHQP 92 (495)
Q Consensus 27 ~~~f~-~~~~~~~V~v~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~-------l~~g~~~ykf~vd---g~w--~~d~~~~ 92 (495)
-++|+ |...|++|+|+|+||+|... ++|.+. ..|+|++.++ +++|.+ |||.|+ |+| +.||-+.
T Consensus 66 gv~F~vwAP~A~~V~l~gdfn~w~~~~~~m~~~--~~GvW~~~v~~~~g~~~i~~g~~-Y~y~i~~~~g~~~~~~dpya~ 142 (755)
T 3aml_A 66 ATIYREWAPAAQEAQLIGEFNNWNGAKHKMEKD--KFGIWSIKISHVNGKPAIPHNSK-VKFRFRHGGGAWVDRIPAWIR 142 (755)
T ss_dssp EEEEEEECTTCSEEEEEEGGGTTCCTTCBCEEC--TTSEEEEEEECBTTBCSSCTTEE-EEEEEECTTCCCEEECCTTCS
T ss_pred eEEEEEECCCCCEEEEEEecCCCCCceeeceeC--CCCEEEEEEcccccccCCCCCCE-EEEEEECCCCcEEecCCcchh
Confidence 47787 99999999999999999864 699873 4799999998 677864 888886 455 4577655
Q ss_pred e
Q 011043 93 F 93 (495)
Q Consensus 93 ~ 93 (495)
.
T Consensus 143 ~ 143 (755)
T 3aml_A 143 Y 143 (755)
T ss_dssp C
T ss_pred e
Confidence 3
No 140
>2laa_A Beta/alpha-amylase; SBD, CBM25, hydrolase; NMR {Paenibacillus polymyxa} PDB: 2lab_A
Probab=96.39 E-value=0.0071 Score=48.39 Aligned_cols=63 Identities=17% Similarity=0.310 Sum_probs=47.8
Q ss_pred eEEEEecCCCceEEEEEccC--CCCCC--CCCCcccCCCCeEEEEEEeCCc-eEEEEEEECC--EEeeCCCC
Q 011043 27 PMRFVWPYGGRSVFLSGSFN--RWSEL--LPMSPVEGCPTVFQIIWSIPPG-YHQYKFCVDG--EWRHDEHQ 91 (495)
Q Consensus 27 ~~~f~~~~~~~~V~v~Gsf~--~W~~~--~~m~~~~~~~~~~~~~~~l~~g-~~~ykf~vdg--~w~~d~~~ 91 (495)
.+++.|..++++|+|...+. +|... ++|.+.. +++.+..+++|+.| .++|+|. || .|-.+...
T Consensus 6 ~vtiyY~~g~~~vylHyg~~~g~Wt~~~~v~M~~~~-~~gw~~~TI~l~~g~~~~~~F~-dG~~~WDNn~g~ 75 (104)
T 2laa_A 6 KVTIYYKKGFNSPYIHYRPAGGSWTAAPGVKMQDAE-ISGYAKITVDIGSASQLEAAFN-DGNNNWDSNNTK 75 (104)
T ss_dssp EEEEEEECSSSSCEEEEEETTSCCCSSSCEECEEET-TTTEEEEEEECTTCSCEEEEEE-CSSSCEESTTTS
T ss_pred EEEEEEcCCCCcEEEEEcCCCCCCCcCCcccccccc-CCCeEEEEEECCCCCEEEEEEe-CCCCcCcCCCCc
Confidence 57788888999999999986 89874 4776642 34544699999975 8999995 77 48766544
No 141
>3vgf_A Malto-oligosyltrehalose trehalohydrolase; alpha/beta barrel, alpha-amylas hydrolase; HET: GLC FLC; 2.30A {Sulfolobus solfataricus} PDB: 3vge_A* 3vgd_A* 3vgb_A* 1eh9_A* 3vgh_A* 3vgg_A* 1eha_A
Probab=96.34 E-value=0.0022 Score=67.89 Aligned_cols=62 Identities=21% Similarity=0.217 Sum_probs=51.2
Q ss_pred eEEEE-ecCCCceEEEEEccCCCCCCCCCCcccCCCCeEEEEEE-eCCceEEEEEEECCE-EeeCCCCCee
Q 011043 27 PMRFV-WPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVDGE-WRHDEHQPFI 94 (495)
Q Consensus 27 ~~~f~-~~~~~~~V~v~Gsf~~W~~~~~m~~~~~~~~~~~~~~~-l~~g~~~ykf~vdg~-w~~d~~~~~~ 94 (495)
-++|+ |...|++|.|++.|+ ..++|.+. .+|+|++.++ +.+|. .|+|.|||. .+.||.....
T Consensus 10 ~~~f~vwap~a~~v~l~~~~~---~~~~m~~~--~~g~w~~~~~~~~~g~-~Y~~~~~~~~~~~DP~~~~~ 74 (558)
T 3vgf_A 10 EVIFTLWAPYQKSVKLKVLEK---GLYEMERD--EKGYFTITLNNVKVRD-RYKYVLDDASEIPDPASRYQ 74 (558)
T ss_dssp EEEEEEECTTCSCCEEEETTT---EEEECEEC--TTCEEEEEESSCCTTC-EEEEECTTSCEECCTTCSCC
T ss_pred cEEEEEECCCCCEEEEEEecC---ceeecccC--CCCEEEEEECCCCCCC-EEEEEEeCCccccCcchhhc
Confidence 46787 999999999999998 45799875 3699999997 78885 699999996 8888877643
No 142
>1bf2_A Isoamylase; hydrolase, glycosidase, debranching enzyme; 2.00A {Pseudomonas amyloderamosa} SCOP: b.1.18.2 b.71.1.1 c.1.8.1
Probab=96.29 E-value=0.0024 Score=70.02 Aligned_cols=55 Identities=15% Similarity=0.189 Sum_probs=45.1
Q ss_pred EEEE-ecCCCceEEEEEccCCCCC-----CCCCCcccCCCCeEEEEEE-eC------CceEEEEEEECCEE
Q 011043 28 MRFV-WPYGGRSVFLSGSFNRWSE-----LLPMSPVEGCPTVFQIIWS-IP------PGYHQYKFCVDGEW 85 (495)
Q Consensus 28 ~~f~-~~~~~~~V~v~Gsf~~W~~-----~~~m~~~~~~~~~~~~~~~-l~------~g~~~ykf~vdg~w 85 (495)
++|+ |...|++|.|++ |++|.. .++|.+. ..|+|++.++ +. +|.|.|+|.|+|.|
T Consensus 18 ~~F~vwap~A~~V~l~l-~~~~~~~~~~~~~~m~~~--~~gvW~~~v~~~~~~~~~~~g~y~Y~y~v~g~~ 85 (750)
T 1bf2_A 18 ITFRVYSSQATRIVLYL-YSAGYGVQESATYTLSPA--GSGVWAVTVPVSSIKAAGITGAVYYGYRAWGPN 85 (750)
T ss_dssp EEEEEECSSCSEEEEEE-ESSSSSCCCSEEEECEEC--STTEEEEEEEHHHHHHTTCCSCCEEEEEEEBTT
T ss_pred EEEEEECCCCCEEEEEE-EccCCCCccceEEecccC--CCCEEEEEECCcccccccCCCCEEEEEEEEeee
Confidence 6787 999999999999 887653 3578764 4699999987 66 89989999999753
No 143
>2wsk_A Glycogen debranching enzyme; carbohydrate metabolism, hydrolase, glycosidase, ISO-amylase glycosyl hydrolase, glycogen metabolism; 2.25A {Escherichia coli k-12}
Probab=96.08 E-value=0.0069 Score=65.35 Aligned_cols=54 Identities=17% Similarity=0.277 Sum_probs=43.9
Q ss_pred eEEEE-ecCCCceEEEEEccCCCC--CCCCCCcccCCCCeEEEEEE-eCCceEEEEEEECCE
Q 011043 27 PMRFV-WPYGGRSVFLSGSFNRWS--ELLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVDGE 84 (495)
Q Consensus 27 ~~~f~-~~~~~~~V~v~Gsf~~W~--~~~~m~~~~~~~~~~~~~~~-l~~g~~~ykf~vdg~ 84 (495)
-++|+ |...|++|.|++ |+++. ..++|.+. .+|+|++.++ +.+|.+ |+|.|+|.
T Consensus 20 g~~F~vwap~A~~V~l~~-f~~~~~~~~~~m~~~--~~g~w~~~v~~~~~g~~-Y~y~v~~~ 77 (657)
T 2wsk_A 20 GVNFTLFSAHAERVELCV-FDANGQEHRYDLPGH--SGDIWHGYLPDARPGLR-YGYRVHGP 77 (657)
T ss_dssp EEEEEEECSSCSEEEEEE-ECTTCCEEEEECCEE--ETTEEEEEEETCCTTCE-EEEEEECC
T ss_pred eEEEEEECCCCCEEEEEE-ECCCCCEEEEeCcCC--CCCEEEEEECCCCCCCE-EEEEEeee
Confidence 47787 999999999999 98765 34789864 4699999986 778876 99999883
No 144
>2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase, protein-carbohydrate complex, desiccation resistance; HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A* 2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A*
Probab=96.06 E-value=0.0054 Score=65.49 Aligned_cols=62 Identities=23% Similarity=0.389 Sum_probs=50.4
Q ss_pred eEEEE-ecCCCceEEEEEccCCCCCCCCCCcccCCCCeEEEEEEeCCceEEEEEEECCEEeeCCCCCeee
Q 011043 27 PMRFV-WPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWRHDEHQPFIS 95 (495)
Q Consensus 27 ~~~f~-~~~~~~~V~v~Gsf~~W~~~~~m~~~~~~~~~~~~~~~l~~g~~~ykf~vdg~w~~d~~~~~~~ 95 (495)
-++|+ |...|++|.|+|+ + ..++|.+.+ .|+|++.+++.+|.+ |+|.|||..+.||.+....
T Consensus 35 ~~~f~vwap~a~~v~l~~~---~-~~~~m~~~~--~g~w~~~~~~~~g~~-Y~~~v~g~~~~DPya~~~~ 97 (602)
T 2bhu_A 35 GTRFRLWTSTARTVAVRVN---G-TEHVMTSLG--GGIYELELPVGPGAR-YLFVLDGVPTPDPYARFLP 97 (602)
T ss_dssp CEEEEEECSSCSSEEEEET---T-EEEECEEEE--TTEEEEEESCCTTCE-EEEEETTEEECCTTCSCCT
T ss_pred eEEEEEECCCCCEEEEEEc---C-CEEeCeeCC--CcEEEEEEECCCCcE-EEEEECCeEecCCCccccC
Confidence 47786 9999999999994 2 357998753 699999999888886 9999999777888776553
No 145
>2vr5_A Glycogen operon protein GLGX; hydrolase, glycosidase, glycosyl hydrolase, glycogen debraching; HET: GLC A16; 2.8A {Sulfolobus solfataricus} PDB: 2vnc_A* 2vuy_A
Probab=95.89 E-value=0.0083 Score=65.40 Aligned_cols=55 Identities=16% Similarity=0.343 Sum_probs=44.0
Q ss_pred eEEEE-ecCCCceEEEEEccCCCC-----CCCCCCcccCCCCeEEEEEE-eCCceEEEEEEECCEE
Q 011043 27 PMRFV-WPYGGRSVFLSGSFNRWS-----ELLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVDGEW 85 (495)
Q Consensus 27 ~~~f~-~~~~~~~V~v~Gsf~~W~-----~~~~m~~~~~~~~~~~~~~~-l~~g~~~ykf~vdg~w 85 (495)
-++|+ |...|++|.|++ |+.+. ..++|.+. ..|+|++.++ +.+|.+ |+|.|+|.|
T Consensus 30 g~~F~vwap~A~~V~l~l-f~~~~~~~~~~~~~m~~~--~~gvw~~~v~~~~~g~~-Y~y~v~g~~ 91 (718)
T 2vr5_A 30 GVNFSLFSENAEKVELLL-YSLTNQKYPKEIIEVKNK--TGDIWHVFVPGLRPGQL-YAYRVYGPY 91 (718)
T ss_dssp EEEEEEECSSCSEEEEEE-CCSSCCSSCSEEEEECEE--SSSEEEEEEETCCTTCE-EEEEEECCE
T ss_pred eEEEEEECCCCCEEEEEE-EcCCCCCCcceEEeCccC--CCCEEEEEeCCCCCCCE-EEEEEeeec
Confidence 47887 999999999999 87543 23688763 4799999986 788987 999999853
No 146
>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A
Probab=95.87 E-value=0.0085 Score=63.80 Aligned_cols=60 Identities=8% Similarity=-0.052 Sum_probs=47.7
Q ss_pred CceeeEEEE-ecCCCceEEE-EEccCCCCC----CCCCCccc--CCCCeEEEEEEeCCceEEEEEEEC
Q 011043 23 TVLIPMRFV-WPYGGRSVFL-SGSFNRWSE----LLPMSPVE--GCPTVFQIIWSIPPGYHQYKFCVD 82 (495)
Q Consensus 23 ~~~~~~~f~-~~~~~~~V~v-~Gsf~~W~~----~~~m~~~~--~~~~~~~~~~~l~~g~~~ykf~vd 82 (495)
...+.++|+ |.+.+++|.| +|+|++|.. .++|.+.. +..++|++.++.....+.|||.|.
T Consensus 20 ~~~~~i~~~~~~~~a~~V~l~~~d~~~~~~~~~~~~~m~~~~~~~~~~~w~~~i~~~~~~~~Y~f~i~ 87 (585)
T 1wzl_A 20 ETQLRVRLRAKKGDVVRCEVLYADRYASPEEELAHALAGKAGSDERFDYFEALLECSTKRVKYVFLLT 87 (585)
T ss_dssp TTEEEEEEEEETTTCSEEEEEEECTTCCTTSCCEEEECEEEEECSSEEEEEEEEECTTSCEEEEEEEE
T ss_pred CCEEEEEEEECCCCccEEEEEECCCcCCCCCceEEEEEEEeecCCCEEEEEEEEECCCCeEEEEEEEE
Confidence 345777886 8889999999 899999975 46898743 224579999998777899999984
No 147
>2e8y_A AMYX protein, pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, HY; 2.11A {Bacillus subtilis} PDB: 2e8z_A* 2e9b_A*
Probab=95.31 E-value=0.019 Score=62.57 Aligned_cols=65 Identities=22% Similarity=0.280 Sum_probs=49.3
Q ss_pred eEEEE-ecCCCceEEEEEccCCCCC-CCCCCcccCCCCeEEEEEE-eCCceEEEEEEEC--CE--EeeCCCCCee
Q 011043 27 PMRFV-WPYGGRSVFLSGSFNRWSE-LLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVD--GE--WRHDEHQPFI 94 (495)
Q Consensus 27 ~~~f~-~~~~~~~V~v~Gsf~~W~~-~~~m~~~~~~~~~~~~~~~-l~~g~~~ykf~vd--g~--w~~d~~~~~~ 94 (495)
-++|+ |...|++|.|++.|++|.. .++|.+.+ .|+|++.++ +.+| ..|+|.|+ |. ++.||.+..+
T Consensus 114 ~~~f~vwap~a~~V~l~~~~~~~~~~~~~m~~~~--~g~w~~~v~~~~~g-~~Y~f~v~~~g~~~~~~DPya~~~ 185 (718)
T 2e8y_A 114 HTVFKVWAPAATSAAVKLSHPNKSGRTFQMTRLE--KGVYAVTVTGDLHG-YEYLFCICNNSEWMETVDQYAKAV 185 (718)
T ss_dssp EEEEEEECTTCSEEEEEEECTTSCCEEEECEECG--GGEEEEEEESCCTT-CEEEEEEEETTEEEEECCTTCSSB
T ss_pred cEEEEEECCCCCEEEEEEEcCCCcceEEeCccCC--CCEEEEEECCCCCC-CeEEEEEEeCCeEEEecCCccccc
Confidence 47787 9999999999999998865 36998753 699999987 4556 35677665 76 4678877654
No 148
>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A*
Probab=95.27 E-value=0.011 Score=62.89 Aligned_cols=60 Identities=17% Similarity=0.174 Sum_probs=47.8
Q ss_pred CceeeEEEE-ecCCCceEEE-EEccCCCCC------CCCCCccc--CCCCeEEEEEEeCCceEEEEEEEC
Q 011043 23 TVLIPMRFV-WPYGGRSVFL-SGSFNRWSE------LLPMSPVE--GCPTVFQIIWSIPPGYHQYKFCVD 82 (495)
Q Consensus 23 ~~~~~~~f~-~~~~~~~V~v-~Gsf~~W~~------~~~m~~~~--~~~~~~~~~~~l~~g~~~ykf~vd 82 (495)
...+.++|+ |...+++|.| .|+|++|+. .++|.+.. +..++|++.++.....+.|+|.|.
T Consensus 20 ~~~~~i~~~~~~~~a~~V~l~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~w~~~v~~~~~~~~Y~f~i~ 89 (588)
T 1j0h_A 20 SETLHLRLRTKKDDIDRVELLHGDPYDWQNGAWQFQMMPMRKTGSDELFDYWFAEVKPPYRRLRYGFVLY 89 (588)
T ss_dssp SSCEEEEEEEETTTCSEEEEEEECTTCEETTEECCEEEECEEEEECSSEEEEEEEECCTTSCEEEEEEEE
T ss_pred CCEEEEEEEECCCCccEEEEEECCCCCccccccceEEEEeEEeecCCCeEEEEEEEECCCcEEEEEEEEE
Confidence 456888887 8889999999 799999965 46998753 224679999998777889999884
No 149
>1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL ABD; 1.70A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A*
Probab=95.23 E-value=0.036 Score=60.13 Aligned_cols=57 Identities=23% Similarity=0.456 Sum_probs=45.6
Q ss_pred CceeeEEEEecC-----CCceEEEEEccC---CCCC--------CC-CCCcccCCCCeEEEEEEeCCc-eEEEEEEE
Q 011043 23 TVLIPMRFVWPY-----GGRSVFLSGSFN---RWSE--------LL-PMSPVEGCPTVFQIIWSIPPG-YHQYKFCV 81 (495)
Q Consensus 23 ~~~~~~~f~~~~-----~~~~V~v~Gsf~---~W~~--------~~-~m~~~~~~~~~~~~~~~l~~g-~~~ykf~v 81 (495)
...++++|.-.+ -|++|+|+|+-. +|++ .+ +|... ....|++++.||+| .++|||++
T Consensus 579 ~~~v~v~F~v~~~~t~~~G~~l~v~G~~~~LG~W~~~~~~~~~~a~~~l~~~--~~~~W~~~v~l~~~~~~eyKy~~ 653 (686)
T 1qho_A 579 GTQTSVVFTVKSAPPTNLGDKIYLTGNIPELGNWSTDTSGAVNNAQGPLLAP--NYPDWFYVFSVPAGKTIQFKFFI 653 (686)
T ss_dssp SSEEEEEEEEESCCCCCTTCEEEEEESSGGGTTTCCCCSSCSSCCBCCCBCT--TTTSEEEEEEEETTCEEEEEEEE
T ss_pred CCeEEEEEEEecccCCCCCCEEEEEeChHHhCCCCCccccchhhhhcccccC--CCCcEEEEEEeCCCCeEEEEEEE
Confidence 356788888443 478999999987 7998 34 77763 46789999999998 69999998
No 150
>2fhf_A Pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, complex with maltotetraose, hydrolase; HET: GLC; 1.65A {Klebsiella aerogenes} SCOP: b.1.18.2 b.1.18.2 b.3.1.3 b.71.1.1 c.1.8.1 PDB: 2fh6_A* 2fh8_A* 2fhb_A* 2fhc_A* 2fgz_A*
Probab=94.92 E-value=0.024 Score=64.12 Aligned_cols=67 Identities=16% Similarity=0.137 Sum_probs=50.7
Q ss_pred eEEEE-ecCCCceEEEEE-ccCCCCC-CCCCCcccCCCCeEEEEEE-eCCceEEEEEEEC------CE----EeeCCCCC
Q 011043 27 PMRFV-WPYGGRSVFLSG-SFNRWSE-LLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVD------GE----WRHDEHQP 92 (495)
Q Consensus 27 ~~~f~-~~~~~~~V~v~G-sf~~W~~-~~~m~~~~~~~~~~~~~~~-l~~g~~~ykf~vd------g~----w~~d~~~~ 92 (495)
-++|+ |...|++|.|++ +|++|.. .++|.+. ...|+|++.++ +.+|.+ |+|.|+ |. .+.||.+.
T Consensus 305 gv~F~vwAP~A~~V~L~l~d~~~~~~~~~~m~~~-~~~GvW~~~v~~~~~G~~-Y~y~v~~~~p~~g~~~~~~~~DPYa~ 382 (1083)
T 2fhf_A 305 GVTFRVWAPTAQQVELVIYSADKKVIASHPMTRD-SASGAWSWQGGSDLKGAF-YRYAMTVYHPQSRKVEQYEVTDPYAH 382 (1083)
T ss_dssp EEEEEEECTTCSEEEEEEECTTCCEEEEEECEEC-TTTCEEEEEECGGGTTCE-EEEEEEEEETTTTEEEEEEECCTTCS
T ss_pred eEEEEEECCCCCEEEEEEEcCCCCccceEECeEC-CCCCEEEEEECCCCCCCE-EEEEEEeecCCCCccccceecCCccc
Confidence 36777 999999999999 9999975 4688753 24699999985 677865 788875 43 47788776
Q ss_pred eee
Q 011043 93 FIS 95 (495)
Q Consensus 93 ~~~ 95 (495)
...
T Consensus 383 ~~~ 385 (1083)
T 2fhf_A 383 SLS 385 (1083)
T ss_dssp CBC
T ss_pred eec
Confidence 544
No 151
>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A*
Probab=94.81 E-value=0.079 Score=56.22 Aligned_cols=58 Identities=17% Similarity=0.273 Sum_probs=45.2
Q ss_pred ceeeEEEEecC---CCceEEEEEccC---CCCCC--CCCCcccC--CCCeEEEEEEeCCc-eEEEEEEE
Q 011043 24 VLIPMRFVWPY---GGRSVFLSGSFN---RWSEL--LPMSPVEG--CPTVFQIIWSIPPG-YHQYKFCV 81 (495)
Q Consensus 24 ~~~~~~f~~~~---~~~~V~v~Gsf~---~W~~~--~~m~~~~~--~~~~~~~~~~l~~g-~~~ykf~v 81 (495)
..++++|.-.+ -|++|+|+|+-. +|++. ++|...+- ++..|++++.||+| .++|||+|
T Consensus 495 ~~v~v~F~v~~~t~~Ge~l~vvGs~~~LG~W~~~~a~~L~~~~~t~~~~~W~~~v~lp~~~~~eYKyvv 563 (599)
T 2vn4_A 495 TSVAVTFHELVSTQFGQTVKVAGNAAALGNWSTSAAVALDAVNYADNHPLWIGTVNLEAGDVVEYKYIN 563 (599)
T ss_dssp SEEEEEEEEECCCCTTCEEEEEESSGGGTTTCTTTSEECBCTTCBTTBCEEEEEEEEETTCEEEEEEEE
T ss_pred CeEEEEEEEeEEcCCCCEEEEEecccCCCCcChhheeecccccCCCCCCcEEEEEEcCCCCcEEEEEEE
Confidence 45778888554 389999999887 89874 57876431 13789999999998 69999998
No 152
>3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable, family 13 glycosyl hydrolas; 1.60A {Thermoanaerobacterium thermosulfurigenorganism_taxid} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A* 1ciu_A 1a47_A 1pj9_A* 1cgt_A
Probab=94.49 E-value=0.064 Score=58.11 Aligned_cols=58 Identities=29% Similarity=0.413 Sum_probs=46.3
Q ss_pred ceeeEEEEecC----CCceEEEEEccC---CCCC--CC-CCCcc-cCCCCeEEEEEEeCCc-eEEEEEEE
Q 011043 24 VLIPMRFVWPY----GGRSVFLSGSFN---RWSE--LL-PMSPV-EGCPTVFQIIWSIPPG-YHQYKFCV 81 (495)
Q Consensus 24 ~~~~~~f~~~~----~~~~V~v~Gsf~---~W~~--~~-~m~~~-~~~~~~~~~~~~l~~g-~~~ykf~v 81 (495)
..++++|.-.. .|+.|+|+||-. +|++ .+ +|... ......|++++.||+| .++|||++
T Consensus 582 ~~v~v~f~v~~~~~~~g~~v~v~G~~~~LG~W~~~~a~~~l~~~~~~~~~~W~~~v~lp~~~~~eyK~~~ 651 (683)
T 3bmv_A 582 NQICVRFVVNNASTVYGENVYLTGNVAELGNWDTSKAIGPMFNQVVYQYPTWYYDVSVPAGTTIQFKFIK 651 (683)
T ss_dssp SEEEEEEEEESCCCCTTCEEEEEESSGGGTTTCGGGCBCSCBCSSSSCTTSEEEEEEEETTCEEEEEEEE
T ss_pred CeEEEEEEEEeccCCCCCEEEEEeCcHHhCCCChhhhhhhhcccCCCCCCcEEEEEEeCCCCcEEEEEEE
Confidence 56889998654 489999999988 9996 35 67651 0236899999999988 79999998
No 153
>4aio_A Limit dextrinase; hydrolase, pullulanase, glycoside hydrolase family 13; 1.90A {Hordeum vulgare} PDB: 2x4c_A* 2y4s_A* 2y5e_A* 2x4b_A
Probab=94.47 E-value=0.024 Score=63.22 Aligned_cols=53 Identities=13% Similarity=0.014 Sum_probs=39.6
Q ss_pred EEEE-ecCCCceEEEEEccCCCCCCC--CCCcccCCCCeEEEEEE-eCCceEEEEEEECC
Q 011043 28 MRFV-WPYGGRSVFLSGSFNRWSELL--PMSPVEGCPTVFQIIWS-IPPGYHQYKFCVDG 83 (495)
Q Consensus 28 ~~f~-~~~~~~~V~v~Gsf~~W~~~~--~m~~~~~~~~~~~~~~~-l~~g~~~ykf~vdg 83 (495)
++|+ |...|++|.|++-+++|.+.. .|.+ +.+|+|++.++ +.+|. .|+|.|++
T Consensus 138 ~~F~vwAp~A~~V~l~l~~~~~~~~~~~~~~~--~~~g~W~~~~~~~~~g~-~Y~y~v~~ 194 (884)
T 4aio_A 138 VSLHLWAPTAQGVSVCFFDGPAGPALETVQLK--ESNGVWSVTGPREWENR-YYLYEVDV 194 (884)
T ss_dssp EEEEEECTTCSEEEEEEESTTTSCEEEEEECE--EETTEEEEEEEGGGTTC-EEEEEEEE
T ss_pred EEEEEECCCCCEEEEEEEeCCCCCeeeeeeec--CCCCEEEEEECCCCCCC-EEEEEEeC
Confidence 7888 999999999999666666532 2333 35799999987 55664 48888875
No 154
>1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1
Probab=94.39 E-value=0.072 Score=57.65 Aligned_cols=59 Identities=24% Similarity=0.420 Sum_probs=46.5
Q ss_pred CceeeEEEEecC----CCceEEEEEccC---CCCCC--C-CCCcc-cCCCCeEEEEEEeCCc-eEEEEEEE
Q 011043 23 TVLIPMRFVWPY----GGRSVFLSGSFN---RWSEL--L-PMSPV-EGCPTVFQIIWSIPPG-YHQYKFCV 81 (495)
Q Consensus 23 ~~~~~~~f~~~~----~~~~V~v~Gsf~---~W~~~--~-~m~~~-~~~~~~~~~~~~l~~g-~~~ykf~v 81 (495)
...++++|.-.. .|+.|+|+||-. +|++. + +|... ......|++++.||+| .++|||++
T Consensus 577 ~~~v~v~f~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~~l~~~~~~~~~~W~~~v~lp~~~~~eyK~v~ 647 (680)
T 1cyg_A 577 NDQVSVRFVVNNATTNLGQNIYIVGNVYELGNWDTSKAIGPMFNQVVYSYPTWYIDVSVPEGKTIEFKFIK 647 (680)
T ss_dssp SCEEEEEEEEESCCCCSSCEEEEEESSGGGBTTCGGGCBCCCBCSSSSCTTCEEEEEEEESSCEEEEEEEE
T ss_pred CCeEEEEEEEeeccCCCCCEEEEEeCcHHhCCCChhhhhhhhccccCCCCCcEEEEEEeCCCCcEEEEEEE
Confidence 356889998654 489999999888 89974 5 67651 0246899999999988 89999998
No 155
>1vem_A Beta-amylase; beta-alpha-barrels, optimum PH, hydrolase; HET: GLC; 1.85A {Bacillus cereus} SCOP: b.3.1.1 c.1.8.1 PDB: 1b90_A* 1j0y_A* 1j0z_A* 1j10_A* 1b9z_A* 1j12_A* 1j18_A* 1j11_A* 5bca_A 1veo_A* 1itc_A* 1ven_A* 1vep_A* 1cqy_A
Probab=94.31 E-value=0.067 Score=55.69 Aligned_cols=57 Identities=12% Similarity=0.178 Sum_probs=44.2
Q ss_pred ceeeEEEEecC----CCceEEEEEccC---CCCCCC---CCCcccCCCCeEEEEEEeCCc-eEEEEEEE
Q 011043 24 VLIPMRFVWPY----GGRSVFLSGSFN---RWSELL---PMSPVEGCPTVFQIIWSIPPG-YHQYKFCV 81 (495)
Q Consensus 24 ~~~~~~f~~~~----~~~~V~v~Gsf~---~W~~~~---~m~~~~~~~~~~~~~~~l~~g-~~~ykf~v 81 (495)
..++++|.-.+ -|++|+|+|+-. +|++.. +|... ..++.|++++.||+| .++|||++
T Consensus 418 ~~v~V~F~v~~~~t~~Ge~v~vvGs~~eLG~W~~~~a~~~l~~~-~~p~~W~~~v~lp~~~~~eYKyv~ 485 (516)
T 1vem_A 418 TPVMQTIVVKNVPTTIGDTVYITGNRAELGSWDTKQYPIQLYYD-SHSNDWRGNVVLPAERNIEFKAFI 485 (516)
T ss_dssp CEEEEEEEEESCCCCTTCEEEEEESSGGGTTTCSSSSCEECEEE-TTTTEEEEEEEEETTCCEEEEEEE
T ss_pred CccceEEEEeeccCCCCCEEEEEeChhhhCCCChhhhceecccC-CCCCEEEEEEEECCCCcEEEEEEE
Confidence 45788888543 489999999987 798752 56542 234599999999998 59999998
No 156
>1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex, oligosaccharide, family 13 glycosyl hydrolase, transglycosylation; HET: GLC; 1.78A {Bacillus circulans} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A* 1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A* 2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A 1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ...
Probab=94.22 E-value=0.083 Score=57.24 Aligned_cols=58 Identities=28% Similarity=0.425 Sum_probs=45.9
Q ss_pred ceeeEEEEecC----CCceEEEEEccC---CCCCC--C-CCCcc-cCCCCeEEEEEEeCCc-eEEEEEEE
Q 011043 24 VLIPMRFVWPY----GGRSVFLSGSFN---RWSEL--L-PMSPV-EGCPTVFQIIWSIPPG-YHQYKFCV 81 (495)
Q Consensus 24 ~~~~~~f~~~~----~~~~V~v~Gsf~---~W~~~--~-~m~~~-~~~~~~~~~~~~l~~g-~~~ykf~v 81 (495)
..++++|.-.. .|+.|+|+||-. +|++. + +|... ......|++++.||+| .++|||++
T Consensus 585 ~~v~v~f~v~~~~~~~g~~~~v~G~~~~LG~W~~~~a~~~l~~~~~~~~~~W~~~v~lp~~~~~eyK~~~ 654 (686)
T 1d3c_A 585 DQVSVRFVVNNATTALGQNVYLTGSVSELGNWDPAKAIGPMYNQVVYQYPNWYYDVSVPAGKTIEFKFLK 654 (686)
T ss_dssp SEEEEEEEEECCCCCTTCEEEEEESSGGGTTTCGGGCBCCCBCSSSSCTTCEEEEEEEETTCEEEEEEEE
T ss_pred CeEEEEEEEeeccCCCCCEEEEEeCcHHhCCCChhhhhhhhccccCCCCCeEEEEEEeCCCCcEEEEEEE
Confidence 56889998644 489999999888 89974 4 66651 1246899999999988 79999997
No 157
>3faw_A Reticulocyte binding protein; TIM barrel, beta barrel, hydrolase, cell WALL, peptidoglycan-anchor, secreted; 2.10A {Streptococcus agalactiae COH1} PDB: 3fax_A*
Probab=94.17 E-value=0.024 Score=62.84 Aligned_cols=65 Identities=15% Similarity=0.143 Sum_probs=50.3
Q ss_pred EEEE-ecCCCceEEEEE-ccCCCCC---CCCCCcccCCCCeEEEEEEeCCce-----EEEEEEECC--E--EeeCCCCCe
Q 011043 28 MRFV-WPYGGRSVFLSG-SFNRWSE---LLPMSPVEGCPTVFQIIWSIPPGY-----HQYKFCVDG--E--WRHDEHQPF 93 (495)
Q Consensus 28 ~~f~-~~~~~~~V~v~G-sf~~W~~---~~~m~~~~~~~~~~~~~~~l~~g~-----~~ykf~vdg--~--w~~d~~~~~ 93 (495)
+.|+ |...|++|.|++ ++++|.. .++|.+. ..|+|++.+.+.||. +.|+|.|++ . ...||.+..
T Consensus 146 v~F~vwAP~A~~V~L~l~d~~~~~~~~~~~~m~~~--~~gvW~~~v~~~~G~~~~~g~~Y~yrv~~~~~~~~~~DPYA~~ 223 (877)
T 3faw_A 146 VEASLWSPSADSVTMIIYDKDNQNRVVATTPLVKN--NKGVWQTILDTKLGIKNYTGYYYLYEIKRGKDKVKILDPYAKS 223 (877)
T ss_dssp EEEEEECTTCSEEEEEEEETTEEEEEEEEEECEEC--TTSEEEEEECGGGTCSCCTTCEEEEEEEETTEEEEECCTTCSC
T ss_pred EEEEEECCCCCEEEEEEEeCCCCccceeeeccccC--CCCEEEEEECCCCCCccCCCeEEEEEEeeCCceeEecCcccee
Confidence 6888 999999999998 7888853 4789873 579999999776662 678888863 3 577887764
Q ss_pred e
Q 011043 94 I 94 (495)
Q Consensus 94 ~ 94 (495)
+
T Consensus 224 ~ 224 (877)
T 3faw_A 224 L 224 (877)
T ss_dssp B
T ss_pred c
Confidence 4
No 158
>2ya0_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; 1.85A {Streptococcus pneumoniae} PDB: 2ya2_A*
Probab=93.67 E-value=0.079 Score=57.65 Aligned_cols=65 Identities=11% Similarity=0.138 Sum_probs=48.8
Q ss_pred EEEE-ecCCCceEEEEE-ccCCCCC---CCCCCcccCCCCeEEEEEEeC--Cc-----eEEEEEEEC--CE--EeeCCCC
Q 011043 28 MRFV-WPYGGRSVFLSG-SFNRWSE---LLPMSPVEGCPTVFQIIWSIP--PG-----YHQYKFCVD--GE--WRHDEHQ 91 (495)
Q Consensus 28 ~~f~-~~~~~~~V~v~G-sf~~W~~---~~~m~~~~~~~~~~~~~~~l~--~g-----~~~ykf~vd--g~--w~~d~~~ 91 (495)
++|+ |...|++|.|++ +|++|.. .++|.+. ..|+|++.++-. +| -+.|+|.|+ |. -..||.+
T Consensus 26 v~F~vwap~A~~V~l~l~~~~~~~~~~~~~~m~~~--~~gvW~~~v~~~~~~g~~~~~g~~Y~y~v~~~~~~~~~~DPya 103 (714)
T 2ya0_A 26 VDLTLWSPSADKVSVVVYDKNDPDKVVGTVALEKG--ERGTWKQTLDSTNKLGITDFTGYYYQYQIERQGKTVLALDPYA 103 (714)
T ss_dssp EEEEEECTTCSEEEEEEECSSCTTSEEEEEECEEC--GGGEEEEEECTTCSSSCSCCTTCEEEEEEEETTEEEEECCTTC
T ss_pred EEEEEECCCCCEEEEEEEeCCCCCccceEEeCccC--CCCEEEEEECCccCCCccccCCcEEEEEEEeCCceEEecCCce
Confidence 6787 999999999999 8988864 4789873 469999988631 33 267888886 54 4678877
Q ss_pred Cee
Q 011043 92 PFI 94 (495)
Q Consensus 92 ~~~ 94 (495)
..+
T Consensus 104 ~~~ 106 (714)
T 2ya0_A 104 KSL 106 (714)
T ss_dssp SEE
T ss_pred eee
Confidence 544
No 159
>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate; 1.65A {Bacillus acidopullulyticus}
Probab=93.61 E-value=0.062 Score=60.12 Aligned_cols=63 Identities=19% Similarity=0.220 Sum_probs=47.1
Q ss_pred eEEEE-ecCCCceEEEEEccCCCC----CCCCCCcccCCCCeEEEEEE-eCCceEEEEEEE--CCE--EeeCCCCCe
Q 011043 27 PMRFV-WPYGGRSVFLSGSFNRWS----ELLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCV--DGE--WRHDEHQPF 93 (495)
Q Consensus 27 ~~~f~-~~~~~~~V~v~Gsf~~W~----~~~~m~~~~~~~~~~~~~~~-l~~g~~~ykf~v--dg~--w~~d~~~~~ 93 (495)
-++|+ |...|++|.|++ |++|. ..++|.+.+ .|+|++.++ +.+|. .|+|.| +|. ++.||.+..
T Consensus 326 gv~F~vwaP~A~~V~l~l-f~~~~~~~~~~~~m~~~~--~gvW~~~v~~~~~g~-~Y~y~v~~~g~~~~~~DPya~~ 398 (921)
T 2wan_A 326 ATSFRVWAPTASNVQLLL-YNSEKGSITKQLEMQKSD--NGTWKLQVSGNLENW-YYLYQVTVNGTTQTAVDPYARA 398 (921)
T ss_dssp EEEEEEECTTCSEEEEEE-ESSSSSCCSEEEECEECG--GGEEEEEEESCCTTC-EEEEEEECSSCEEEECCTTCSS
T ss_pred eEEEEEECCCCCEEEEEE-EeCCCCCcCeEEeCeeCC--CCEEEEEEccCCCCC-EEEEEEEeCCeEEEecCCccee
Confidence 46777 999999999998 99994 246898743 699999987 45664 377776 554 567887654
No 160
>3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics, center for structural genomics of infectious diseases, unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella enterica subsp}
Probab=93.46 E-value=0.083 Score=56.42 Aligned_cols=63 Identities=22% Similarity=0.343 Sum_probs=48.6
Q ss_pred eEEEE-ecCCCceEEEEEccCCCCCCCCCCcccCCCCeEEEEEE-eCCceEEEEEEEC-CEEeeCCCCCeeeC
Q 011043 27 PMRFV-WPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVD-GEWRHDEHQPFISS 96 (495)
Q Consensus 27 ~~~f~-~~~~~~~V~v~Gsf~~W~~~~~m~~~~~~~~~~~~~~~-l~~g~~~ykf~vd-g~w~~d~~~~~~~~ 96 (495)
-++|+ |...|++|.|++ +|.. .||.+. .+|.|.+.++ +.+|. .|||.|+ |..+.||.......
T Consensus 43 ~~~F~vwap~a~~v~l~~---~~~~-~~m~~~--~~g~~~~~~~~~~~g~-~Y~y~v~~~~~~~DP~a~~~~~ 108 (618)
T 3m07_A 43 VVRFRLWATGQQKVMLRL---AGKD-QEMQAN--GDGWFTLDVAGVTPGT-EYNFVLSDGMVVPDPASRAQKT 108 (618)
T ss_dssp EEEEEEECTTCSCEEEEE---TTEE-EECEEC--STTEEEEEEETCCTTC-EEEEEETTSCEECCTTCSCBSS
T ss_pred cEEEEEECCCCCEEEEEE---CCCc-ccCeec--CCEEEEEEeCCCCCCC-EEEEEEeCCeEeccccceeeec
Confidence 36888 999999999998 3544 689875 3689999885 77776 5899995 56888888775543
No 161
>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1
Probab=92.74 E-value=0.024 Score=60.23 Aligned_cols=60 Identities=15% Similarity=0.246 Sum_probs=46.2
Q ss_pred CceeeEEEE-ecCCCceEEE-EEccCCCCC---CCCCCccc--CCCCeEEEEEEeCCceEEEEEEEC
Q 011043 23 TVLIPMRFV-WPYGGRSVFL-SGSFNRWSE---LLPMSPVE--GCPTVFQIIWSIPPGYHQYKFCVD 82 (495)
Q Consensus 23 ~~~~~~~f~-~~~~~~~V~v-~Gsf~~W~~---~~~m~~~~--~~~~~~~~~~~l~~g~~~ykf~vd 82 (495)
...+.++|+ |.+.+++|.| +|+|++|.. .++|.+.. +..|+|++.++.......|||.|.
T Consensus 20 ~~~~~~~~~~~~~~a~~V~l~~~d~~~~~~~~~~~~M~~~~~~~~~~~w~~~i~~~~~~~~Y~f~i~ 86 (583)
T 1ea9_C 20 GTTVHLRIRTKKDDMTAVYALAGDKYMWDHTMEYVPMTKLATDELFDYWECEVTPPYRRVKYGFLLQ 86 (583)
T ss_dssp SSCEECCCEECTTCCSBEEEEEECSSSCTTTCEEEEECEEEECSSCEEECCEECCTTSCEEECBCCE
T ss_pred CCEEEEEEEECCCCccEEEEEECCCcCCCCcEEEEEEEEEeccCCeEEEEEEEECCCceEEEEEEEE
Confidence 345677776 9889999999 799999975 36898743 224679999987777788888873
No 162
>1ji1_A Alpha-amylase I; beta/alpha barrel, hydrolase; 1.60A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1uh3_A* 2d0f_A* 1izj_A 1uh4_A* 1uh2_A* 2d0g_A* 2d0h_A* 1izk_A
Probab=91.53 E-value=0.15 Score=54.69 Aligned_cols=56 Identities=11% Similarity=0.167 Sum_probs=42.1
Q ss_pred eEEEE-e----cCCCceEEEEEccCCCCC-CCCCCc--cc--CCCCeEEEEEEeCCceEEEEEEECC
Q 011043 27 PMRFV-W----PYGGRSVFLSGSFNRWSE-LLPMSP--VE--GCPTVFQIIWSIPPGYHQYKFCVDG 83 (495)
Q Consensus 27 ~~~f~-~----~~~~~~V~v~Gsf~~W~~-~~~m~~--~~--~~~~~~~~~~~l~~g~~~ykf~vdg 83 (495)
.++|+ | ...+++|.|++.|++ .. .++|.+ .. +..|+|++.++.......|+|.|+|
T Consensus 31 ~v~f~v~~~~~ap~a~~V~l~~~~~~-~~~~~~m~~~~~~~~~~~~~w~~~i~~~~~g~~Y~f~i~~ 96 (637)
T 1ji1_A 31 SVTLKLRTFKGDITSANIKYWDTADN-AFHWVPMVWDSNDPTGTFDYWKGTIPASPSIKYYRFQIND 96 (637)
T ss_dssp CEEEEEEEETTCCSEEEEEEEETTTT-EEEEEECEEEEECTTSSEEEEEEEECCCSSCEEEEEEEEE
T ss_pred EEEEEEEEecCcCCeeEEEEEEecCC-CEEEEEeEEeeccccCCeeEEEEEEECCCceEEEEEEEEE
Confidence 46776 8 677999999999874 32 368887 32 2348999999876667789999965
No 163
>2ya1_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; HET: BGC GLC; 2.25A {Streptococcus pneumoniae}
Probab=91.31 E-value=0.18 Score=56.94 Aligned_cols=64 Identities=11% Similarity=0.126 Sum_probs=47.4
Q ss_pred EEEE-ecCCCceEEEEE-ccCCCCC---CCCCCcccCCCCeEEEEEEeC--Cc-----eEEEEEEEC--CE--EeeCCCC
Q 011043 28 MRFV-WPYGGRSVFLSG-SFNRWSE---LLPMSPVEGCPTVFQIIWSIP--PG-----YHQYKFCVD--GE--WRHDEHQ 91 (495)
Q Consensus 28 ~~f~-~~~~~~~V~v~G-sf~~W~~---~~~m~~~~~~~~~~~~~~~l~--~g-----~~~ykf~vd--g~--w~~d~~~ 91 (495)
++|+ |...|++|.|++ +|++|.+ .++|.+. ..|+|++.++-. +| .+.|+|.|+ |. ...||.+
T Consensus 333 v~F~vwAP~A~~V~L~l~d~~~~~~~~~~~~m~~~--~~gvW~~~v~~~~~~g~~~~~G~~Y~y~i~~~~~~~~~~DPYa 410 (1014)
T 2ya1_A 333 VDLTLWSPSADKVSVVVYDKNDPDKVVGTVALEKG--ERGTWKQTLDSTNKLGITDFTGYYYQYQIERQGKTVLALDPYA 410 (1014)
T ss_dssp EEEEEECTTCSEEEEEEECSSCTTSEEEEEECEEC--GGGEEEEEECTTCSSCCSCCTTCEEEEEEEETTEEEEECCTTC
T ss_pred EEEEEECCCCCEEEEEEEECCCCCccceEEecccC--CCCEEEEEEcccccCCccccCCcEEEEEEEeCCeEEEecCccc
Confidence 6787 999999999999 8988864 4789873 469999988631 23 256888885 53 4677765
Q ss_pred Ce
Q 011043 92 PF 93 (495)
Q Consensus 92 ~~ 93 (495)
..
T Consensus 411 ~~ 412 (1014)
T 2ya1_A 411 KS 412 (1014)
T ss_dssp SS
T ss_pred ee
Confidence 43
No 164
>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A*
Probab=89.69 E-value=0.063 Score=56.23 Aligned_cols=57 Identities=21% Similarity=0.406 Sum_probs=0.0
Q ss_pred ceeeEEEEe-cC---CCceEEEEEccC---CCCC--CCCCCcccCCCCeEEEEEEeCCc-eEEEEEEE
Q 011043 24 VLIPMRFVW-PY---GGRSVFLSGSFN---RWSE--LLPMSPVEGCPTVFQIIWSIPPG-YHQYKFCV 81 (495)
Q Consensus 24 ~~~~~~f~~-~~---~~~~V~v~Gsf~---~W~~--~~~m~~~~~~~~~~~~~~~l~~g-~~~ykf~v 81 (495)
..++++|.- .+ -|++|+|+||-. +|++ .++|... .....|++++.||+| .++|||+|
T Consensus 429 ~~v~v~F~v~~~~t~~G~~v~v~G~~~~LG~W~~~~a~~l~~~-~~~~~W~~~v~lp~~~~~eyKy~~ 495 (527)
T 1gcy_A 429 ALVSVSFRCDNGATQMGDSVYAVGNVSQLGNWSPAAALRLTDT-SGYPTWKGSIALPAGQNEEWKCLI 495 (527)
T ss_dssp --------------------------------------------------------------------
T ss_pred CEEEEEEEEecccCCCCCeEEEEcChhHhCCCCcccCccCccC-CCCCeEEEEEEeCCCCcEEEEEEE
Confidence 357888884 33 389999999988 7987 3678631 236789999999998 69999997
No 165
>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate; 1.65A {Bacillus acidopullulyticus}
Probab=88.88 E-value=0.55 Score=52.49 Aligned_cols=59 Identities=27% Similarity=0.519 Sum_probs=43.7
Q ss_pred eeeEEEEecCCCceEEEEEcc-------CCCCCCC---CCCcccCCCCeEEEEEEeCCceEEEEEEECCEE
Q 011043 25 LIPMRFVWPYGGRSVFLSGSF-------NRWSELL---PMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEW 85 (495)
Q Consensus 25 ~~~~~f~~~~~~~~V~v~Gsf-------~~W~~~~---~m~~~~~~~~~~~~~~~l~~g~~~ykf~vdg~w 85 (495)
++|+..--...+..+.+.|+| .+|++.- -|.+. .+|.|+.+-.||+|.|+||+.++|.|
T Consensus 152 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~w~p~~~~~~~~~~--~~~~y~~~~~l~~g~y~~kv~~~~~w 220 (921)
T 2wan_A 152 KIPVTSAVSANPVTAVLVGDLQQALGAANNWSPDDDHTLLKKI--NPNLYQLSGTLPAGTYQYKIALDHSW 220 (921)
T ss_dssp EECEEEEEECCCCCEEEEETTSGGGTCSSSSCTTCGGGBCEEE--ETTEEEEEEEECSEEEEEEEEETTSS
T ss_pred cccccccccccccccccccchhhhccccccCCCCCCcceeecc--CCcceeeeeccCCcceeEEEeecCcc
Confidence 455555555566778888876 4788753 23222 37899999999999999999999777
No 166
>4fch_A Outer membrane protein SUSE; starch binding, extracellular, carbohydrate-B protein; HET: GLC; 1.30A {Bacteroides thetaiotaomicron}
Probab=87.86 E-value=0.46 Score=43.51 Aligned_cols=51 Identities=20% Similarity=0.219 Sum_probs=41.0
Q ss_pred CceEEEEEccCCCCC--CCCCCcccCCCCeEEEEEEeCCceEEEEEEECCEEee
Q 011043 36 GRSVFLSGSFNRWSE--LLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWRH 87 (495)
Q Consensus 36 ~~~V~v~Gsf~~W~~--~~~m~~~~~~~~~~~~~~~l~~g~~~ykf~vdg~w~~ 87 (495)
.+++|++|++++|.. ..+|.+....++.|...+.|+.|. +|||.-+..|-.
T Consensus 12 p~~lY~vG~~~gW~~~~~~~m~~~~~~~g~y~~~~yl~ag~-~fKf~~~~~~~~ 64 (221)
T 4fch_A 12 PKTMFIVGSMLDTDWKVWKPMAGVYGMDGQFYSMIYFDANS-EFKFGTKENEYI 64 (221)
T ss_dssp CSCCEEEETTTCTTSCCEEECEECTTCTTEEEEEEEECTTE-EEEEESSTTCCB
T ss_pred cceEEEEecCCCCCCCccceeeeccCCCceEEEEEEEcCCC-eEEEeeccCccc
Confidence 578999999998864 358887766789999999998775 899998765543
No 167
>2c3v_A Alpha-amylase G-6; carbohydrate-binding module, starch binding, carbohydrate binding, glycoside hydrolase, amylose, amylopectin; HET: TYI; 1.39A {Bacillus halodurans} PDB: 2c3v_B* 2c3w_A* 2c3x_A*
Probab=85.54 E-value=1.6 Score=34.49 Aligned_cols=61 Identities=15% Similarity=0.381 Sum_probs=42.8
Q ss_pred eEEEEecCCCceEEEEEccC--CCCCC--CCCCcccCCCCeEEEEEEeCC-ceEEEEEEECC--EEeeCC
Q 011043 27 PMRFVWPYGGRSVFLSGSFN--RWSEL--LPMSPVEGCPTVFQIIWSIPP-GYHQYKFCVDG--EWRHDE 89 (495)
Q Consensus 27 ~~~f~~~~~~~~V~v~Gsf~--~W~~~--~~m~~~~~~~~~~~~~~~l~~-g~~~ykf~vdg--~w~~d~ 89 (495)
.+++.|..++.+|+|-=.+. +|... ++|.+. .+.|.|..+++|+. ..++|+| -|| .|-.+.
T Consensus 11 ~vTvyY~sg~~~~ylHy~~~~g~Wt~vpgv~M~~~-~~~Gw~~~TI~~~~~~~l~~~F-~dG~~~WDNN~ 78 (102)
T 2c3v_A 11 DITIYYKTGWTHPHIHYSLNQGAWTTLPGVPLTKS-EXEGXVKVTIEAEEGSQLRAAF-NNGSGQWDNNQ 78 (102)
T ss_dssp SEEEEEECCCSSCEEEEEETTCCBCCTTCEECEEC-SSTTEEEEEECCCTTCEEEEEE-ECSSSCEECGG
T ss_pred EEEEEEcCCCCcEEEEEeCCCCCcccCCCcCcccc-ccCCceEEEEecCCCceEEEEE-eCCCcccccCC
Confidence 34455557889998876665 38763 577653 26888999999986 4889998 555 586543
No 168
>4fe9_A Outer membrane protein SUSF; starch binding, IG fold, extracellular surface, outermembran carbohydrate-binding protein; HET: GLC BGC MTT; 2.00A {Bacteroides thetaiotaomicron}
Probab=62.01 E-value=8.2 Score=39.29 Aligned_cols=47 Identities=13% Similarity=0.217 Sum_probs=36.3
Q ss_pred CceEEEEEccCCCCCC--CCCCcccCCCCeEEEEEEeCCceEEEEEEECC
Q 011043 36 GRSVFLSGSFNRWSEL--LPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDG 83 (495)
Q Consensus 36 ~~~V~v~Gsf~~W~~~--~~m~~~~~~~~~~~~~~~l~~g~~~ykf~vdg 83 (495)
....||+|++++|... .+|.+....++.|+....|..+. +|||....
T Consensus 150 ~~~~YlvG~~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~fK~~~~~ 198 (470)
T 4fe9_A 150 PDGYYIVGDFTGWDGNSAQQMKKDALDENLYILEAEIESTS-NFKIFPAS 198 (470)
T ss_dssp TTCEEEEETTTCSSGGGCEECEECSSCTTEEEEEEEESSCC-EEEEEEGG
T ss_pred cceeEEEcccCCCCcccCeeeeeecCCCceEEEEEEeccCc-eEEEeecc
Confidence 3568999999999853 36666556788999999987665 79999753
No 169
>4dny_A Metalloprotease STCE; metzincin, bacterial zinc metalloprotease, O-linked glycoPro hydrolase; 1.61A {Escherichia coli}
Probab=55.08 E-value=14 Score=30.12 Aligned_cols=23 Identities=22% Similarity=0.557 Sum_probs=19.2
Q ss_pred EEEeCCc-eEEEEEEECCEEeeCCC
Q 011043 67 IWSIPPG-YHQYKFCVDGEWRHDEH 90 (495)
Q Consensus 67 ~~~l~~g-~~~ykf~vdg~w~~d~~ 90 (495)
.+.|..| .|.|+| ++|+|+.+.+
T Consensus 99 svtl~rG~t~~F~y-~~g~Wv~~gd 122 (126)
T 4dny_A 99 KVTLSVGNTLLFKY-VNGQWFRSGE 122 (126)
T ss_dssp EEEECTTCEEEEEE-ETTEEEETTC
T ss_pred EEEecCCCEEEEEE-cCCEEEEccc
Confidence 3577888 899999 9999998765
No 170
>2jnz_A PHL P 3 allergen; timothy grass pollen; NMR {Phleum pratense}
Probab=51.12 E-value=31 Score=27.36 Aligned_cols=60 Identities=17% Similarity=0.257 Sum_probs=41.5
Q ss_pred CceeeEEEEecCCC---ceEEEEE-ccCCCCCCCCCCcccCCCCeEEEEEE-eCCceEEEEEEE-CCEEeeC
Q 011043 23 TVLIPMRFVWPYGG---RSVFLSG-SFNRWSELLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCV-DGEWRHD 88 (495)
Q Consensus 23 ~~~~~~~f~~~~~~---~~V~v~G-sf~~W~~~~~m~~~~~~~~~~~~~~~-l~~g~~~ykf~v-dg~w~~d 88 (495)
+.-..+.+.+-+|+ ..|.|.| +=++|. ||.+. +..|++.-. -..|-+.||+.. ||+|...
T Consensus 25 p~~l~VlV~nv~G~GdI~~V~Ik~~~~~~W~---~M~rn---Ga~W~~~s~~~L~GplSfRvtts~G~~~va 90 (108)
T 2jnz_A 25 PKKLVLDIKYTRPGDSLAEVELRQHGSEEWE---PLTKK---GNVWEVKSSKPLVGPFNFRFMSKGGMRNVF 90 (108)
T ss_dssp SSEEEEEEEEEBTTBCEEEEEEECTTCCCCE---ECEEE---TTEEEEECSSCCCSSEEEEEEETTTEEEEE
T ss_pred ccEEEEEEEEeCCCCCEEEEEEEeCCCCcEe---Ecccc---CCEeEeCCCCCCCCCEEEEEEEcCCcEEEE
Confidence 34455666666654 5689996 777885 68874 579998751 235788888887 6787765
No 171
>4fe9_A Outer membrane protein SUSF; starch binding, IG fold, extracellular surface, outermembran carbohydrate-binding protein; HET: GLC BGC MTT; 2.00A {Bacteroides thetaiotaomicron}
Probab=47.40 E-value=14 Score=37.56 Aligned_cols=53 Identities=25% Similarity=0.500 Sum_probs=38.1
Q ss_pred CceEEEEEccCCCCCC-------CCCCcccCCCCeEEEEEEeCCceEEEEEEECCEEeeCC
Q 011043 36 GRSVFLSGSFNRWSEL-------LPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWRHDE 89 (495)
Q Consensus 36 ~~~V~v~Gsf~~W~~~-------~~m~~~~~~~~~~~~~~~l~~g~~~ykf~vdg~w~~d~ 89 (495)
...++++|++++|.-. .+|.+..+.++.|...+.+..+ .+|||.-++.|-.+-
T Consensus 260 ~~~lyivG~~~~wg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-gefKF~~~~~W~~~~ 319 (470)
T 4fe9_A 260 PTELYMTGSAYNWGTPAGDPNAWKALVPVNGTKGTFWGIFYFAAN-DQVKFAPQANWGNDF 319 (470)
T ss_dssp CSCCEEEEGGGGGGCSTTCTTTCEECEECTTCTTEEEEEEEECTT-CEEEEESSSSSSSCB
T ss_pred cceEEEEeecccCCCCCCCcccccccccccCcCceEEEEEEECCC-ceEEEEecCCccccc
Confidence 4679999999987421 1344444567899999888654 588999998886554
No 172
>2djm_A Glucoamylase A; beta sandwich, anti-parallel, strach binding, carbohydrate binding, sugar binding protein; NMR {Rhizopus oryzae} PDB: 2v8l_A* 2v8m_A* 2vq4_A
Probab=47.33 E-value=42 Score=26.48 Aligned_cols=49 Identities=14% Similarity=0.087 Sum_probs=33.6
Q ss_pred CceEEEEEc--cCCCCC-CCCC--C--cc--cCCCCeEEEEEEeCCc-eEEEEEEECCE
Q 011043 36 GRSVFLSGS--FNRWSE-LLPM--S--PV--EGCPTVFQIIWSIPPG-YHQYKFCVDGE 84 (495)
Q Consensus 36 ~~~V~v~Gs--f~~W~~-~~~m--~--~~--~~~~~~~~~~~~l~~g-~~~ykf~vdg~ 84 (495)
.|.|.|.=+ |++|+. .... . +. ...-..|...+.||+. .+--+|.|+|+
T Consensus 33 eK~V~VR~T~~~D~W~t~~~dv~a~y~~~~~~~~~D~F~F~i~l~~~~eFcIrY~v~g~ 91 (106)
T 2djm_A 33 SKKVTVVYADGSDNWNNNGNIIAASFSGPISGSNYEYWTFSASVKGIKEFYIKYEVSGK 91 (106)
T ss_dssp CEEEEEEEEETTSSCSSCCCEEECEEEEECTTSSCEEEEEEECCSSEEEEEEEEEESSC
T ss_pred CcEEEEEECCCcCCCccccEEEEEEEecCCCCCCeEEEEEEEECCCCeEEEEEEEECCc
Confidence 477888777 999998 3211 1 11 1234689999999765 56678899996
No 173
>2eef_A Protein phosphatase 1, regulatory (inhibitor) subunit 3B; CBM_21 domain, carbohydrate binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.92 E-value=21 Score=30.38 Aligned_cols=49 Identities=18% Similarity=0.350 Sum_probs=35.2
Q ss_pred CceEEEEEccCCCCCCC--CCCccc-----CCCCeEEEEEEeCC-----c--eEEEEEEECCE
Q 011043 36 GRSVFLSGSFNRWSELL--PMSPVE-----GCPTVFQIIWSIPP-----G--YHQYKFCVDGE 84 (495)
Q Consensus 36 ~~~V~v~Gsf~~W~~~~--~m~~~~-----~~~~~~~~~~~l~~-----g--~~~ykf~vdg~ 84 (495)
.|.|+|.=+|++|+... ++.... .....|...+.||+ + .+-.||.|+|+
T Consensus 60 eK~V~VR~T~D~Wkt~~dv~a~y~~~~~~~~~~D~F~F~I~lp~~~~~~~~leFcIrY~v~g~ 122 (156)
T 2eef_A 60 EKTVKIRMTFDTWKSYTDFPCQYVKDTYAGSDRDTFSFDISLPEKIQSYERMEFAVYYECNGQ 122 (156)
T ss_dssp CCEEEEEEESSTTSSEEEEECEECCCSSSCSSSCEEEECCCCCSCCCTTSCCEEEEEEEETTE
T ss_pred CcEEEEEEeECCCcccEEEEEEEccccCCCCCceEEEEEEECCCccCCCcEEEEEEEEEeCCC
Confidence 68899999999998642 333221 12358999999886 2 56678889996
No 174
>4fem_A Outer membrane protein SUSE; starch binding, extracellular, carbohydrate-B protein; HET: ACX; 2.50A {Bacteroides thetaiotaomicron}
Probab=46.48 E-value=12 Score=36.51 Aligned_cols=51 Identities=20% Similarity=0.230 Sum_probs=38.9
Q ss_pred CceEEEEEccCCCCC--CCCCCcccCCCCeEEEEEEeCCceEEEEEEECCEEee
Q 011043 36 GRSVFLSGSFNRWSE--LLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWRH 87 (495)
Q Consensus 36 ~~~V~v~Gsf~~W~~--~~~m~~~~~~~~~~~~~~~l~~g~~~ykf~vdg~w~~ 87 (495)
....|++|++.+|.- ..+|.+..+.+|.|...+.|+.| ..|||.-+..|-.
T Consensus 149 p~~lYlvG~~~~~~w~~~~~l~~~~~~~g~y~~~~yl~~~-~~fKf~~~~~~~~ 201 (358)
T 4fem_A 149 PKTMFIVGSMLDTDWKVWKPMAGVYGMDGQFYSMIYFDAN-SEFKFGTKENEYI 201 (358)
T ss_dssp CSCCEEEETTTCTTSCCEEECEECTTSTTEEEEEEEECTT-EEEEEESSTTCCB
T ss_pred cceEEEeccccCCCCcccceeeeccCCCceEEEEEEecCC-ceEEeccccCCcc
Confidence 477999999997643 34777766678999999999766 5789987765543
No 175
>1tif_A IF3-N, translation initiation factor 3; IF3 N-terminal domain, ribosome binding factor; 1.80A {Geobacillus stearothermophilus} SCOP: d.15.8.1
Probab=45.54 E-value=35 Score=25.29 Aligned_cols=29 Identities=17% Similarity=0.385 Sum_probs=24.5
Q ss_pred CCEEEEEcCCCcEEEEEeHHHHHHHHhhc
Q 011043 385 VSSIPIVDDNDSLLDIYCRSDITALAKDK 413 (495)
Q Consensus 385 ~~~lpVvd~~g~lvGivs~~Dl~~~~~~~ 413 (495)
...+=++|++|..+|+++.++.++++...
T Consensus 13 ~~eVrli~~~Ge~lGv~~~~eAl~~A~e~ 41 (78)
T 1tif_A 13 AREVRLIDQNGDQLGIKSKQEALEIAARR 41 (78)
T ss_dssp CSEEEEECTTSCEEEEEEHHHHHHHHHHT
T ss_pred CCEEEEECCCCcCCCcccHHHHHHHHHHc
Confidence 35577899999999999999999887654
No 176
>1mhx_A Immunoglobulin-binding protein G; alpha-beta protein, redesigned first beta-hairpin, immune SY; 1.80A {Finegoldia magna} SCOP: d.15.7.1 PDB: 1mi0_A
Probab=37.26 E-value=14 Score=25.21 Aligned_cols=13 Identities=46% Similarity=0.864 Sum_probs=10.9
Q ss_pred ECCEEeeCCCCCe
Q 011043 81 VDGEWRHDEHQPF 93 (495)
Q Consensus 81 vdg~w~~d~~~~~ 93 (495)
|||+|.+|+...+
T Consensus 48 vdgeWsYD~ATkT 60 (65)
T 1mhx_A 48 VDGEWTYDDAAKT 60 (65)
T ss_dssp CCSEEEEETTTTE
T ss_pred CccEEEecCceeE
Confidence 5899999998764
No 177
>4fch_A Outer membrane protein SUSE; starch binding, extracellular, carbohydrate-B protein; HET: GLC; 1.30A {Bacteroides thetaiotaomicron}
Probab=35.36 E-value=14 Score=33.39 Aligned_cols=49 Identities=18% Similarity=0.196 Sum_probs=35.0
Q ss_pred ceEEEEEc--cCCCCCC--CCCCcccCCCCeEEEEEEeCCceEEEEEEECCEE
Q 011043 37 RSVFLSGS--FNRWSEL--LPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEW 85 (495)
Q Consensus 37 ~~V~v~Gs--f~~W~~~--~~m~~~~~~~~~~~~~~~l~~g~~~ykf~vdg~w 85 (495)
.+|+|+|+ -++|... .+|......++.|.....|..|.++++|..+..|
T Consensus 117 ~~v~liG~at~~gW~~~~~~~~t~~~t~~g~~~~~~~l~~Ge~k~~~~~~~DW 169 (221)
T 4fch_A 117 AEVYLFGNTTGGSWAFNDEWKFTVPATKDGNFVSPAMTASGEVRMCFKTDLDW 169 (221)
T ss_dssp CCEEEEBGGGTSBCSCBGGGBCBCCSSTTCCEECCCCCSCEECEEEECCSSCG
T ss_pred ceEEEEEeecCCCCCCCcccceeeccCCCceEEeEEEecCCcEEEEEcCCCCc
Confidence 46999998 4588753 3555433467889988999999877776665444
No 178
>4a02_A EFCBM33A, CBM33, chitin binding protein; chitin degradation, chitin oxidation; 0.95A {Enterococcus faecalis} SCOP: b.1.18.0
Probab=33.56 E-value=1.9e+02 Score=24.63 Aligned_cols=71 Identities=14% Similarity=0.333 Sum_probs=43.5
Q ss_pred eEEEEecCCCce------EEEEEccCCCCCCCCCCccc------------CCCCeEEEEEEeCCceEEEEEEECCEEeeC
Q 011043 27 PMRFVWPYGGRS------VFLSGSFNRWSELLPMSPVE------------GCPTVFQIIWSIPPGYHQYKFCVDGEWRHD 88 (495)
Q Consensus 27 ~~~f~~~~~~~~------V~v~Gsf~~W~~~~~m~~~~------------~~~~~~~~~~~l~~g~~~ykf~vdg~w~~d 88 (495)
+++|+|...|.. +||+ -.+|++..||+..+ ..++.++..+.||.++--| ++|=..|...
T Consensus 75 ~~~f~w~~TA~H~t~~~~~YIT--K~gwdp~~pLtw~dle~~~~~~~~~~~p~~~y~~~v~lP~~rsG~-hVI~~vWq~~ 151 (166)
T 4a02_A 75 PLDITWNLTAQHRTASWDYYIT--KNGWNPNQPLDIKNFDKIASIDGKQEVPNKVVKQTINIPTDRKGY-HVIYAVWGIG 151 (166)
T ss_dssp EEEEEEEESSCCCEEEEEEEEE--CTTCCTTSCCCGGGEEEEEEEEEEEECCCSEEEEEEEECTTCCEE-EEEEEEEEES
T ss_pred ceEEEEeeecccCCCeEEEEEc--CCCCCCCCCccHHHCeeeeeecCCCcCCCCeEEEEEEeCCCCccC-EEEEEEEEec
Confidence 478888887643 5665 45888877887532 1245677778887543222 2555678887
Q ss_pred CCCCeeeCCCCCeeeEEEe
Q 011043 89 EHQPFISSEYGIVNTVLLA 107 (495)
Q Consensus 89 ~~~~~~~~~~g~~nn~~~v 107 (495)
+. ...+.|++.|
T Consensus 152 Dt-------~eaFY~csDV 163 (166)
T 4a02_A 152 DT-------VNAFYQAIDV 163 (166)
T ss_dssp SS-------SEEEEEEEEE
T ss_pred CC-------CCCCEEEEEE
Confidence 54 1235566655
No 179
>1svj_A Potassium-transporting ATPase B chain; alpha-beta sandwich, hydrolase; NMR {Escherichia coli} SCOP: d.220.1.1 PDB: 1u7q_A 2a00_A* 2a29_A*
Probab=31.72 E-value=21 Score=30.30 Aligned_cols=35 Identities=37% Similarity=0.676 Sum_probs=29.4
Q ss_pred HHHHHHHHHcCCCcEEEEEeCCCCeEEEEEehHHHHH
Q 011043 455 LHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 491 (495)
Q Consensus 455 L~~a~~~m~~~~~~~l~VVd~~~~~lvGiIs~~DIl~ 491 (495)
+.+.++.+...+..-++|-. +++++|+|.+.|.+|
T Consensus 121 ~~~~~~~la~~G~T~v~VA~--d~~l~GvIalaD~iK 155 (156)
T 1svj_A 121 VDQKVDQVARQGATPLVVVE--GSRVLGVIALKDIVK 155 (156)
T ss_dssp HHHHHHHHHHTTCEEEEEEE--TTEEEEEEEEEECCC
T ss_pred HHHHHHHHHhCCCCEEEEEE--CCEEEEEEEEecCCC
Confidence 67778889999988888887 489999999998654
No 180
>2fqm_A Phosphoprotein, P protein; negative strand RNA virus, polymerase, replication, cofactor, viral protein; 2.30A {Vesicular stomatitis indiana virus} SCOP: d.378.1.1
Probab=31.24 E-value=24 Score=25.18 Aligned_cols=27 Identities=19% Similarity=0.345 Sum_probs=15.5
Q ss_pred EccCCCCCCCCCCcccCCCCeEEEEEEeCCc
Q 011043 43 GSFNRWSELLPMSPVEGCPTVFQIIWSIPPG 73 (495)
Q Consensus 43 Gsf~~W~~~~~m~~~~~~~~~~~~~~~l~~g 73 (495)
|||.+|... .| +. .++.-+..+.+|.|
T Consensus 1 ~~~s~W~qP-~l-k~--~g~~KsL~Lf~P~g 27 (75)
T 2fqm_A 1 GSHMDWKQP-EL-ES--DEHGKTLRLTLPEG 27 (75)
T ss_dssp ----CCCCC-EE-EE--ETTEEEEEEECCSS
T ss_pred CCcccccCc-ee-ec--CCCCceEEEeCCCC
Confidence 899999773 33 32 35777888888877
No 181
>4aef_A Neopullulanase (alpha-amylase II); hydrolase, thermostability, high temperature; 2.34A {Pyrococcus furiosus}
Probab=31.08 E-value=50 Score=34.90 Aligned_cols=52 Identities=15% Similarity=0.098 Sum_probs=37.4
Q ss_pred ceeeEEEE-ecCCCceEEEEEccCCCCCCCCCCcccCCCC---eEEEEEEeCCceEEEEEEE
Q 011043 24 VLIPMRFV-WPYGGRSVFLSGSFNRWSELLPMSPVEGCPT---VFQIIWSIPPGYHQYKFCV 81 (495)
Q Consensus 24 ~~~~~~f~-~~~~~~~V~v~Gsf~~W~~~~~m~~~~~~~~---~~~~~~~l~~g~~~ykf~v 81 (495)
..+-++|+ +.+..++|.+.|. ..+||.+.. +.+ .|++.++.+.....|+|.|
T Consensus 123 ~~~~~r~~~~~~~~~~~~~~~~-----~~~~m~~~~-~~~~~d~w~~~v~~~~~~~~Y~f~i 178 (645)
T 4aef_A 123 GRVHVLLRTQKGVIKGATFLGE-----KHVPMRKKA-SDELFDYFEVIVEGGDKRLNYSFEV 178 (645)
T ss_dssp TEEEEEEEEETTTEEEEEEESS-----SEEECEEEE-ECSSEEEEEEEEECSCSCEEEEEEE
T ss_pred CeEEEEEEcccCCcceEEEeCC-----CEEEEEEEe-cCCCeEEEEEEEECCCCceEEEEEE
Confidence 34566776 5555678888864 457998753 344 4889998888888999988
No 182
>1igd_A Protein G; immunoglobulin binding protein; 1.10A {Streptococcus SP} SCOP: d.15.7.1 PDB: 1igc_A 2igd_A 2igh_A 1qkz_A 2igg_A 1uwx_A 3mp9_A
Probab=30.26 E-value=21 Score=24.45 Aligned_cols=13 Identities=38% Similarity=0.728 Sum_probs=10.4
Q ss_pred ECCEEeeCCCCCe
Q 011043 81 VDGEWRHDEHQPF 93 (495)
Q Consensus 81 vdg~w~~d~~~~~ 93 (495)
|||+|.+|+.-.+
T Consensus 44 vdgew~yd~atkt 56 (61)
T 1igd_A 44 VDGVWTYDDATKT 56 (61)
T ss_dssp CCCEEEEETTTTE
T ss_pred CCceEeecCceeE
Confidence 5899999987764
No 183
>3fil_A Immunoglobulin G-binding protein G; dimerization, beta sheet, alpha helix, improved hydrophobic packing of core residues, protein binding; HET: FME; 0.88A {Streptococcus SP} SCOP: d.15.7.1 PDB: 2qmt_A 2jsv_X 2ju6_X 2k0p_A 2kq4_X 2kwd_A 2lgi_A 2gi9_A 1gb1_A 1pga_A 1pgb_A 2gb1_A 3gb1_A 2klk_A 2rmm_A 2onq_A 2on8_A 2j52_A 2j53_A 3v3x_A* ...
Probab=29.83 E-value=14 Score=24.65 Aligned_cols=13 Identities=46% Similarity=0.869 Sum_probs=10.1
Q ss_pred ECCEEeeCCCCCe
Q 011043 81 VDGEWRHDEHQPF 93 (495)
Q Consensus 81 vdg~w~~d~~~~~ 93 (495)
|||+|.+|+.-.+
T Consensus 39 vdgeW~YD~ATkT 51 (56)
T 3fil_A 39 VDGEWTYDDATKT 51 (56)
T ss_dssp CCCEEEEEGGGTE
T ss_pred CccEEEecCceeE
Confidence 5889999987653
No 184
>3ft1_A PHL P 3 allergen; beta-barrel; 1.79A {Phleum pratense} SCOP: b.7.3.0 PDB: 3ft9_A
Probab=25.28 E-value=1.6e+02 Score=22.82 Aligned_cols=59 Identities=17% Similarity=0.260 Sum_probs=40.7
Q ss_pred ceeeEEEEecCCC---ceEEEEEccC-CCCCCCCCCcccCCCCeEEEEEE-eCCceEEEEEEE-CCEEeeC
Q 011043 24 VLIPMRFVWPYGG---RSVFLSGSFN-RWSELLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCV-DGEWRHD 88 (495)
Q Consensus 24 ~~~~~~f~~~~~~---~~V~v~Gsf~-~W~~~~~m~~~~~~~~~~~~~~~-l~~g~~~ykf~v-dg~w~~d 88 (495)
.-.-+.+.+-+|+ ..|.|.|+=+ +|. ||.+ - +..|++.-. ...|-+.||+.. ||+|...
T Consensus 15 ~~l~vlv~nv~G~gdI~~V~ik~s~t~~W~---~M~r-w--Ga~W~~~s~~~l~GplSfRvt~~~G~~~v~ 79 (100)
T 3ft1_A 15 KKLVLDIKYTRPGDSLAEVELRQHGSEEWE---PLTK-K--GNVWEVKSSKPLVGPFNFRFMSKGGMRNVF 79 (100)
T ss_dssp TEEEEEEEEECTTCCEEEEEEECTTCCCCE---ECEE-E--TTEEEEECSSCCCSSEEEEEEETTCCEEEE
T ss_pred ceEEEEEEEcCCCccEEEEEEEeCCCCCeE---Eecc-c--CCEeEeCCCCCCCCCEEEEEEEcCCcEEEE
Confidence 3355666666665 4588999987 795 6777 3 578998752 345788888877 7777654
No 185
>2bem_A CBP21; chitin-binding protein, chitin degradation, chitin-binding, FNIII-like fold; 1.55A {Serratia marcescens} SCOP: b.1.18.2 PDB: 2lhs_A 2ben_A
Probab=24.78 E-value=3.3e+02 Score=23.25 Aligned_cols=72 Identities=14% Similarity=0.289 Sum_probs=43.9
Q ss_pred eEEEEecCCCce------EEEEEccCCCCCCCCCCccc--------------CCCCeEEEEEEeCCceEEEEEEECCEEe
Q 011043 27 PMRFVWPYGGRS------VFLSGSFNRWSELLPMSPVE--------------GCPTVFQIIWSIPPGYHQYKFCVDGEWR 86 (495)
Q Consensus 27 ~~~f~~~~~~~~------V~v~Gsf~~W~~~~~m~~~~--------------~~~~~~~~~~~l~~g~~~ykf~vdg~w~ 86 (495)
+++|+|...|.. +||+ -.+|.+..||+..+ .-++.++..+.||.|+--| ++|=..|.
T Consensus 76 ~~~f~w~~TA~H~t~~~~~YIT--K~gwdp~~pLtw~dlel~pf~~~~~~~~~p~~~~~~~~~lP~~rsG~-hVI~~vWq 152 (170)
T 2bem_A 76 PNSFTWKLTARHSTTSWRYFIT--KPNWDASQPLTRASFDLTPFCQFNDGGAIPAAQVTHQCNIPADRSGS-HVILAVWD 152 (170)
T ss_dssp EEEEEEEESSCCCEEEEEEEEE--CTTCCTTSCCCGGGEEEEEEEEEECTTCCCCSEEEEEEEECTTCCEE-EEEEEEEE
T ss_pred cEEEEEEeecccCCceEEEEEC--CCCCCCCCCccHHHccccceeecCCCCcCCCceEEEEEEcCCCCccC-EEEEEEEE
Confidence 688999887633 5554 35787776776431 1134677788888765443 45556788
Q ss_pred eCCCCCeeeCCCCCeeeEEEec
Q 011043 87 HDEHQPFISSEYGIVNTVLLAT 108 (495)
Q Consensus 87 ~d~~~~~~~~~~g~~nn~~~v~ 108 (495)
..+.. ..+.|++.|.
T Consensus 153 ~~Dt~-------eaFY~c~DV~ 167 (170)
T 2bem_A 153 IADTA-------NAFYQAIDVN 167 (170)
T ss_dssp ESSSS-------EEEEEEEEEE
T ss_pred eccCC-------CCCEEEEEEE
Confidence 87511 2356666653
No 186
>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus}
Probab=24.31 E-value=53 Score=35.09 Aligned_cols=57 Identities=18% Similarity=0.142 Sum_probs=37.2
Q ss_pred ceeeEEEEecCCCceEEEEEccCCCCCCCCCCcccCCCCeEEEEEEeCCceEEEEEEECC
Q 011043 24 VLIPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDG 83 (495)
Q Consensus 24 ~~~~~~f~~~~~~~~V~v~Gsf~~W~~~~~m~~~~~~~~~~~~~~~l~~g~~~ykf~vdg 83 (495)
..+.++|+=+.+..+|.+...-..|.. .|....+....|+++++ +.+.+.|+|.+++
T Consensus 132 ~~~~~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~Y~f~~~~ 188 (696)
T 4aee_A 132 GEIIIRLIAPTEINEPLIDLGNEIREP--LTKHVVGDNIVYQYIIP-SRSILRYRFIFNY 188 (696)
T ss_dssp TEEEEEEEEETTSCCCEEECSSCEECC--SEEEEETTEEEEEEEEE-CCSEEEEEEEEEE
T ss_pred CEEEEEEEEcCCCCEEEEEcCCcceee--eeeeecCCceEEEEEEc-CCCeEEEEEEEEE
Confidence 467788874447777777654444442 33333333458999999 7788999999953
No 187
>1xbr_A Protein (T protein); complex (transcription factor/DNA), transcription factor, DNA-binding protein, transcription/DNA complex; HET: DNA; 2.50A {Xenopus laevis} SCOP: b.2.5.4
Probab=24.12 E-value=60 Score=28.33 Aligned_cols=29 Identities=21% Similarity=0.656 Sum_probs=22.6
Q ss_pred CCeEEEEEEeCC-ceEEEEEEECCEEeeCCC
Q 011043 61 PTVFQIIWSIPP-GYHQYKFCVDGEWRHDEH 90 (495)
Q Consensus 61 ~~~~~~~~~l~~-g~~~ykf~vdg~w~~d~~ 90 (495)
...|.+.+++.| ..+.||| ++|+|.....
T Consensus 45 ~~~Y~v~l~~~~~D~~ryk~-~~~~W~~~gk 74 (184)
T 1xbr_A 45 NAMYTVLLDFVAADNHRWKY-VNGEWVPGGK 74 (184)
T ss_dssp TSEEEEEEEEEESSSCEEEE-ETTEEEEESS
T ss_pred ccCeEEEEEEEEccCceEEE-ECCcEEEcCc
Confidence 456888888766 5899998 7999987643
No 188
>4gln_D D-RFX001; heterochiral protein-protein complex, D-protein antagonist, factor-inihibitor complex; HET: DTY DSG DTH DVA DPN DTR DGL DIL DAS; 1.60A {Synthetic} PDB: 4gls_D* 4gls_C*
Probab=23.51 E-value=32 Score=23.07 Aligned_cols=16 Identities=19% Similarity=0.453 Sum_probs=12.3
Q ss_pred EEEEC-CEEeeCCCCCe
Q 011043 78 KFCVD-GEWRHDEHQPF 93 (495)
Q Consensus 78 kf~vd-g~w~~d~~~~~ 93 (495)
..-|| |+|.+|+...+
T Consensus 35 ~n~~d~geWtYddaTKT 51 (56)
T 4gln_D 35 SXFSDFDDWTYDDATKT 51 (56)
T ss_pred hcCCcCCeeEecCccee
Confidence 44577 99999998764
No 189
>2rpv_A Immunoglobulin G-binding protein G; lanthanide binding peptide, LBT, paramagnetic effect, olivia, cell WALL, IGG-binding protein; NMR {Streptococcus SP}
Probab=23.41 E-value=32 Score=24.35 Aligned_cols=13 Identities=46% Similarity=0.869 Sum_probs=10.2
Q ss_pred ECCEEeeCCCCCe
Q 011043 81 VDGEWRHDEHQPF 93 (495)
Q Consensus 81 vdg~w~~d~~~~~ 93 (495)
|||+|.+|+.-.+
T Consensus 58 vdgeWsYD~ATkT 70 (75)
T 2rpv_A 58 VDGEWTYDDATKT 70 (75)
T ss_dssp CCSEEEEETTTTE
T ss_pred CCceEeecCceeE
Confidence 5889999987764
No 190
>1tif_A IF3-N, translation initiation factor 3; IF3 N-terminal domain, ribosome binding factor; 1.80A {Geobacillus stearothermophilus} SCOP: d.15.8.1
Probab=22.27 E-value=1.1e+02 Score=22.51 Aligned_cols=25 Identities=16% Similarity=0.320 Sum_probs=20.5
Q ss_pred CcEEEEEeCCCCeEEEEEehHHHHHH
Q 011043 467 VRRLVIVEAGSKRVEGIVSLSDIFKF 492 (495)
Q Consensus 467 ~~~l~VVd~~~~~lvGiIs~~DIl~~ 492 (495)
.+.+=++++ +|..+|+++..+-++.
T Consensus 13 ~~eVrli~~-~Ge~lGv~~~~eAl~~ 37 (78)
T 1tif_A 13 AREVRLIDQ-NGDQLGIKSKQEALEI 37 (78)
T ss_dssp CSEEEEECT-TSCEEEEEEHHHHHHH
T ss_pred CCEEEEECC-CCcCCCcccHHHHHHH
Confidence 455778984 7999999999998865
No 191
>1ew4_A CYAY protein; friedreich ataxia, frataxin family, iron homeostasis, unknown function; 1.40A {Escherichia coli} SCOP: d.82.2.1 PDB: 2eff_A 2p1x_A 1soy_A
Probab=20.92 E-value=66 Score=25.31 Aligned_cols=18 Identities=22% Similarity=0.457 Sum_probs=13.5
Q ss_pred ceEEEEEEECCEEeeCCCC
Q 011043 73 GYHQYKFCVDGEWRHDEHQ 91 (495)
Q Consensus 73 g~~~ykf~vdg~w~~d~~~ 91 (495)
|-|+|.|. +|+|+++-..
T Consensus 67 sG~hfd~~-~~~Wi~~r~g 84 (106)
T 1ew4_A 67 GGYHFDLK-GDEWICDRSG 84 (106)
T ss_dssp CEEEEEEE-TTEEEETTTC
T ss_pred Cceeeeec-CCEEEECCCC
Confidence 33888885 8999987654
No 192
>2vzp_A Aocbm35, EXO-beta-D-glucosaminidase; family 35, CSXA, glucuronic acid, hydrolase; 1.05A {Amycolatopsis orientalis} PDB: 2vzq_A* 2vzr_A*
Probab=20.62 E-value=56 Score=26.18 Aligned_cols=17 Identities=12% Similarity=0.227 Sum_probs=14.9
Q ss_pred EEEEeCCceEEEEEEEC
Q 011043 66 IIWSIPPGYHQYKFCVD 82 (495)
Q Consensus 66 ~~~~l~~g~~~ykf~vd 82 (495)
+.+.|++|.|..+|..+
T Consensus 98 ~~v~L~aG~ntI~l~~~ 114 (127)
T 2vzp_A 98 VRVTLAAGVNKIKAVAT 114 (127)
T ss_dssp EEEEECSEEEEEEEEEC
T ss_pred EEEEECCCceEEEEEEe
Confidence 46899999999999885
Done!