BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011044
(495 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 155 bits (392), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 124/346 (35%), Positives = 171/346 (49%), Gaps = 50/346 (14%)
Query: 66 NLTGTIPSE-LANLSSLQALDLSFNWFYGSIPSSIFNMS-SLLSIYFNNNTLFGELPPNF 123
N +G +P + L + L+ LDLSFN F G +P S+ N+S SLL++ ++N G + PN
Sbjct: 326 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 385
Query: 124 C-NQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLN 182
C N + L+ L+L+ N F GKIP TLS+C +L L LS NY SGTIP +G+L+KL L
Sbjct: 386 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 445
Query: 183 LRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPXXXXXXXXXXXXXXXXXXFTGIIPS 242
L N L+GEIP+EL + LE L L N LTG IP TG IP
Sbjct: 446 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 505
Query: 243 SIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEI--------- 293
IG L +L L LS+N SG +PA +G + SL L L N F+G IP +
Sbjct: 506 WIGRLENLAILKLSNNSFSGNIPAELG-DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAA 564
Query: 294 -----------------------GNLTKLTDLYLDQ-NKLQGKIPHEI------------ 317
GNL + + +Q N+L + P I
Sbjct: 565 NFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT 624
Query: 318 -GNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLP 362
N + +L +S+N L G +P I ++ L L L +N +SGS+P
Sbjct: 625 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 670
Score = 155 bits (392), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 120/317 (37%), Positives = 155/317 (48%), Gaps = 22/317 (6%)
Query: 67 LTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQ 126
TG IP L+N S L +L LSFN+ G+IPSS+ ++S L + N L GE+P
Sbjct: 403 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM-Y 461
Query: 127 MSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQN 186
+ LE+L L +N G+IPS LS+C L +SLS+N +G IPK IG L L L L N
Sbjct: 462 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 521
Query: 187 KLQGEIPEELGNLAELEMLWLQNNSLTGTIPXXXXXXXXXXXXXXXXXXFTGIIPS---- 242
G IP ELG+ L L L N GTIP I +
Sbjct: 522 SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMK 581
Query: 243 ----SIGNLSSLQKLYLSD-NQLSGELPANI------GNNLP------SLQTLSLYVNDF 285
GNL Q + N+LS P NI G+ P S+ L + N
Sbjct: 582 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML 641
Query: 286 SGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLS 345
SG IPKEIG++ L L L N + G IP E+G+LR L L LS NKL G +P + L+
Sbjct: 642 SGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT 701
Query: 346 TLISLQLHNNSLSGSLP 362
L + L NN+LSG +P
Sbjct: 702 MLTEIDLSNNNLSGPIP 718
Score = 136 bits (342), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 116/348 (33%), Positives = 168/348 (48%), Gaps = 37/348 (10%)
Query: 48 VTCDVRSHRVAAL---NISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSS 104
++ DV R L ++S N + IP L + S+LQ LD+S N G +I +
Sbjct: 187 ISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTE 245
Query: 105 LLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLS-SCKQLRELSLSSNY 163
L + ++N G +PP + +L+ L L N F G+IP LS +C L L LS N+
Sbjct: 246 LKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH 302
Query: 164 FSGTIPKEIG-------------------------NLTKLTRLNLRQNKLQGEIPEELGN 198
F G +P G + L L+L N+ GE+PE L N
Sbjct: 303 FYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTN 362
Query: 199 L-AELEMLWLQNNSLTGTI--PXXXXXXXXXXXXXXXXXXFTGIIPSSIGNLSSLQKLYL 255
L A L L L +N+ +G I FTG IP ++ N S L L+L
Sbjct: 363 LSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHL 422
Query: 256 SDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPH 315
S N LSG +P+++G+ L L+ L L++N G IP+E+ + L L LD N L G+IP
Sbjct: 423 SFNYLSGTIPSSLGS-LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 481
Query: 316 EIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPS 363
+ N L W+ LS+N+L G +P I L L L+L NNS SG++P+
Sbjct: 482 GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 529
Score = 135 bits (341), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 118/313 (37%), Positives = 162/313 (51%), Gaps = 15/313 (4%)
Query: 60 LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNM-SSLLSIYFNNNTLFGE 118
LNIS G IP L SLQ L L+ N F G IP + +L + + N +G
Sbjct: 249 LNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA 306
Query: 119 LPPNFCNQMSNLESLFLKYNMFHGKIP-STLSSCKQLRELSLSSNYFSGTIPKEIGNLTK 177
+PP F S LESL L N F G++P TL + L+ L LS N FSG +P+ + NL+
Sbjct: 307 VPP-FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA 365
Query: 178 -LTRLNLRQNKLQGEIPEELGNLAE-----LEMLWLQNNSLTGTIPXXXXXXXXXXXXXX 231
L L+L N G I L NL + L+ L+LQNN TG IP
Sbjct: 366 SLLTLDLSSNNFSGPI---LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHL 422
Query: 232 XXXXFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPK 291
+G IPSS+G+LS L+ L L N L GE+P + + +L+TL L ND +G IP
Sbjct: 423 SFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL-MYVKTLETLILDFNDLTGEIPS 481
Query: 292 EIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQ 351
+ N T L + L N+L G+IP IG L L L LS+N G +PA + + +LI L
Sbjct: 482 GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD 541
Query: 352 LHNNSLSGSLPSS 364
L+ N +G++P++
Sbjct: 542 LNTNLFNGTIPAA 554
Score = 109 bits (272), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 105/310 (33%), Positives = 147/310 (47%), Gaps = 12/310 (3%)
Query: 57 VAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLF 116
++A +ISG N+ G + S+ L+ L +S N G + S L + NN F
Sbjct: 155 LSANSISGANVVGWVLSD--GCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNN---F 209
Query: 117 GELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLT 176
P F S L+ L + N G +S+C +L+ L++SSN F G IP L
Sbjct: 210 STGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LK 266
Query: 177 KLTRLNLRQNKLQGEIPEEL-GNLAELEMLWLQNNSLTGTIPXXXXXXXXXXXXXXXXXX 235
L L+L +NK GEIP+ L G L L L N G +P
Sbjct: 267 SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN 326
Query: 236 FTGIIP-SSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIG 294
F+G +P ++ + L+ L LS N+ SGELP ++ N SL TL L N+FSG I +
Sbjct: 327 FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLC 386
Query: 295 NLTK--LTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQL 352
K L +LYL N GKIP + N +L L LS N L G +P+ + +LS L L+L
Sbjct: 387 QNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL 446
Query: 353 HNNSLSGSLP 362
N L G +P
Sbjct: 447 WLNMLEGEIP 456
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 110/396 (27%), Positives = 183/396 (46%), Gaps = 47/396 (11%)
Query: 28 PTNFLAKNWNTSSSFCYWTGVTCDVRSHRVAALNISGL---------------------- 65
P L +W+++ + C + GVTC R +V ++++S
Sbjct: 22 PDKNLLPDWSSNKNPCTFDGVTC--RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESL 79
Query: 66 -----NLTGTIPSELANLSSLQALDLSFNWFYGSIP--SSIFNMSSLLSIYFNNNTLFGE 118
++ G++ S +SL +LDLS N G + +S+ + S L + ++NTL +
Sbjct: 80 FLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--D 136
Query: 119 LPPNFCN--QMSNLESLFLKYNMFHGK--IPSTLS-SCKQLRELSLSSNYFSGTIPKEIG 173
P ++++LE L L N G + LS C +L+ L++S N SG + ++
Sbjct: 137 FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVS 194
Query: 174 NLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPXXXXXXXXXXXXXXXX 233
L L++ N IP LG+ + L+ L + N L+G
Sbjct: 195 RCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 253
Query: 234 XXFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEI 293
F G IP L SLQ L L++N+ +GE+P + +L L L N F GA+P
Sbjct: 254 NQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 311
Query: 294 GNLTKLTDLYLDQNKLQGKIPHE-IGNLRKLEWLMLSHNKLVGVVPAPIFNLS-TLISLQ 351
G+ + L L L N G++P + + +R L+ L LS N+ G +P + NLS +L++L
Sbjct: 312 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 371
Query: 352 LHNNSLSGS-LPSSADVPLPNLEELFLWEYGREGRV 386
L +N+ SG LP+ P L+EL+L G G++
Sbjct: 372 LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI 407
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 109/242 (45%), Gaps = 50/242 (20%)
Query: 45 WTGVTCDVRSHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSS 104
W G R +A L +S + +G IP+EL + SL LDL+ N F G+IP+++F S
Sbjct: 506 WIG-----RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG 560
Query: 105 LLS---------IYFNNNTL------------FGELPPNFCNQMSNLESLFLKYNMFHGK 143
++ +Y N+ + F + N++S + ++ G
Sbjct: 561 KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGH 620
Query: 144 IPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELE 203
T + + L +S N SG IPKEIG++ L LNL N + G IP+E+G+L L
Sbjct: 621 TSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLN 680
Query: 204 MLWLQNNSLTGTIPXXXXXXXXXXXXXXXXXXFTGIIPSSIGNLSSLQKLYLSDNQLSGE 263
+L L +N L G IP ++ L+ L ++ LS+N LSG
Sbjct: 681 ILDLSSNKLDGR------------------------IPQAMSALTMLTEIDLSNNNLSGP 716
Query: 264 LP 265
+P
Sbjct: 717 IP 718
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 67/163 (41%), Gaps = 5/163 (3%)
Query: 32 LAKNWNTSSSFCYWTGVTCDVRSHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWF 91
+A N+ + Y H L L G +L LS+ +++ +
Sbjct: 562 IAANFIAGKRYVYIKNDGMKKECHGAGNL----LEFQGIRSEQLNRLSTRNPCNITSRVY 617
Query: 92 YGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSC 151
G + N S++ + + N L G +P M L L L +N G IP +
Sbjct: 618 GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI-GSMPYLFILNLGHNDISGSIPDEVGDL 676
Query: 152 KQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPE 194
+ L L LSSN G IP+ + LT LT ++L N L G IPE
Sbjct: 677 RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 719
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 155 bits (391), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 124/346 (35%), Positives = 171/346 (49%), Gaps = 50/346 (14%)
Query: 66 NLTGTIPSE-LANLSSLQALDLSFNWFYGSIPSSIFNMS-SLLSIYFNNNTLFGELPPNF 123
N +G +P + L + L+ LDLSFN F G +P S+ N+S SLL++ ++N G + PN
Sbjct: 329 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 388
Query: 124 C-NQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLN 182
C N + L+ L+L+ N F GKIP TLS+C +L L LS NY SGTIP +G+L+KL L
Sbjct: 389 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448
Query: 183 LRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPXXXXXXXXXXXXXXXXXXFTGIIPS 242
L N L+GEIP+EL + LE L L N LTG IP TG IP
Sbjct: 449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 508
Query: 243 SIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEI--------- 293
IG L +L L LS+N SG +PA +G + SL L L N F+G IP +
Sbjct: 509 WIGRLENLAILKLSNNSFSGNIPAELG-DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAA 567
Query: 294 -----------------------GNLTKLTDLYLDQ-NKLQGKIPHEI------------ 317
GNL + + +Q N+L + P I
Sbjct: 568 NFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT 627
Query: 318 -GNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLP 362
N + +L +S+N L G +P I ++ L L L +N +SGS+P
Sbjct: 628 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 673
Score = 155 bits (391), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 120/317 (37%), Positives = 155/317 (48%), Gaps = 22/317 (6%)
Query: 67 LTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQ 126
TG IP L+N S L +L LSFN+ G+IPSS+ ++S L + N L GE+P
Sbjct: 406 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM-Y 464
Query: 127 MSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQN 186
+ LE+L L +N G+IPS LS+C L +SLS+N +G IPK IG L L L L N
Sbjct: 465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 524
Query: 187 KLQGEIPEELGNLAELEMLWLQNNSLTGTIPXXXXXXXXXXXXXXXXXXFTGIIPS---- 242
G IP ELG+ L L L N GTIP I +
Sbjct: 525 SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMK 584
Query: 243 ----SIGNLSSLQKLYLSD-NQLSGELPANI------GNNLP------SLQTLSLYVNDF 285
GNL Q + N+LS P NI G+ P S+ L + N
Sbjct: 585 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML 644
Query: 286 SGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLS 345
SG IPKEIG++ L L L N + G IP E+G+LR L L LS NKL G +P + L+
Sbjct: 645 SGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT 704
Query: 346 TLISLQLHNNSLSGSLP 362
L + L NN+LSG +P
Sbjct: 705 MLTEIDLSNNNLSGPIP 721
Score = 136 bits (342), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 116/348 (33%), Positives = 168/348 (48%), Gaps = 37/348 (10%)
Query: 48 VTCDVRSHRVAAL---NISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSS 104
++ DV R L ++S N + IP L + S+LQ LD+S N G +I +
Sbjct: 190 ISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTE 248
Query: 105 LLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLS-SCKQLRELSLSSNY 163
L + ++N G +PP + +L+ L L N F G+IP LS +C L L LS N+
Sbjct: 249 LKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH 305
Query: 164 FSGTIPKEIG-------------------------NLTKLTRLNLRQNKLQGEIPEELGN 198
F G +P G + L L+L N+ GE+PE L N
Sbjct: 306 FYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTN 365
Query: 199 L-AELEMLWLQNNSLTGTI--PXXXXXXXXXXXXXXXXXXFTGIIPSSIGNLSSLQKLYL 255
L A L L L +N+ +G I FTG IP ++ N S L L+L
Sbjct: 366 LSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHL 425
Query: 256 SDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPH 315
S N LSG +P+++G+ L L+ L L++N G IP+E+ + L L LD N L G+IP
Sbjct: 426 SFNYLSGTIPSSLGS-LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 484
Query: 316 EIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPS 363
+ N L W+ LS+N+L G +P I L L L+L NNS SG++P+
Sbjct: 485 GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 532
Score = 135 bits (341), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 118/313 (37%), Positives = 162/313 (51%), Gaps = 15/313 (4%)
Query: 60 LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNM-SSLLSIYFNNNTLFGE 118
LNIS G IP L SLQ L L+ N F G IP + +L + + N +G
Sbjct: 252 LNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA 309
Query: 119 LPPNFCNQMSNLESLFLKYNMFHGKIP-STLSSCKQLRELSLSSNYFSGTIPKEIGNLTK 177
+PP F S LESL L N F G++P TL + L+ L LS N FSG +P+ + NL+
Sbjct: 310 VPP-FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA 368
Query: 178 -LTRLNLRQNKLQGEIPEELGNLAE-----LEMLWLQNNSLTGTIPXXXXXXXXXXXXXX 231
L L+L N G I L NL + L+ L+LQNN TG IP
Sbjct: 369 SLLTLDLSSNNFSGPI---LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHL 425
Query: 232 XXXXFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPK 291
+G IPSS+G+LS L+ L L N L GE+P + + +L+TL L ND +G IP
Sbjct: 426 SFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL-MYVKTLETLILDFNDLTGEIPS 484
Query: 292 EIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQ 351
+ N T L + L N+L G+IP IG L L L LS+N G +PA + + +LI L
Sbjct: 485 GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD 544
Query: 352 LHNNSLSGSLPSS 364
L+ N +G++P++
Sbjct: 545 LNTNLFNGTIPAA 557
Score = 109 bits (272), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 105/310 (33%), Positives = 147/310 (47%), Gaps = 12/310 (3%)
Query: 57 VAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLF 116
++A +ISG N+ G + S+ L+ L +S N G + S L + NN F
Sbjct: 158 LSANSISGANVVGWVLSD--GCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNN---F 212
Query: 117 GELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLT 176
P F S L+ L + N G +S+C +L+ L++SSN F G IP L
Sbjct: 213 STGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LK 269
Query: 177 KLTRLNLRQNKLQGEIPEEL-GNLAELEMLWLQNNSLTGTIPXXXXXXXXXXXXXXXXXX 235
L L+L +NK GEIP+ L G L L L N G +P
Sbjct: 270 SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN 329
Query: 236 FTGIIP-SSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIG 294
F+G +P ++ + L+ L LS N+ SGELP ++ N SL TL L N+FSG I +
Sbjct: 330 FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLC 389
Query: 295 NLTK--LTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQL 352
K L +LYL N GKIP + N +L L LS N L G +P+ + +LS L L+L
Sbjct: 390 QNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL 449
Query: 353 HNNSLSGSLP 362
N L G +P
Sbjct: 450 WLNMLEGEIP 459
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 110/396 (27%), Positives = 183/396 (46%), Gaps = 47/396 (11%)
Query: 28 PTNFLAKNWNTSSSFCYWTGVTCDVRSHRVAALNISGL---------------------- 65
P L +W+++ + C + GVTC R +V ++++S
Sbjct: 25 PDKNLLPDWSSNKNPCTFDGVTC--RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESL 82
Query: 66 -----NLTGTIPSELANLSSLQALDLSFNWFYGSIP--SSIFNMSSLLSIYFNNNTLFGE 118
++ G++ S +SL +LDLS N G + +S+ + S L + ++NTL +
Sbjct: 83 FLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--D 139
Query: 119 LPPNFCN--QMSNLESLFLKYNMFHGK--IPSTLS-SCKQLRELSLSSNYFSGTIPKEIG 173
P ++++LE L L N G + LS C +L+ L++S N SG + ++
Sbjct: 140 FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVS 197
Query: 174 NLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPXXXXXXXXXXXXXXXX 233
L L++ N IP LG+ + L+ L + N L+G
Sbjct: 198 RCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 256
Query: 234 XXFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEI 293
F G IP L SLQ L L++N+ +GE+P + +L L L N F GA+P
Sbjct: 257 NQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 314
Query: 294 GNLTKLTDLYLDQNKLQGKIPHE-IGNLRKLEWLMLSHNKLVGVVPAPIFNLS-TLISLQ 351
G+ + L L L N G++P + + +R L+ L LS N+ G +P + NLS +L++L
Sbjct: 315 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 374
Query: 352 LHNNSLSGS-LPSSADVPLPNLEELFLWEYGREGRV 386
L +N+ SG LP+ P L+EL+L G G++
Sbjct: 375 LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI 410
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 109/242 (45%), Gaps = 50/242 (20%)
Query: 45 WTGVTCDVRSHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSS 104
W G R +A L +S + +G IP+EL + SL LDL+ N F G+IP+++F S
Sbjct: 509 WIG-----RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG 563
Query: 105 LLS---------IYFNNNTL------------FGELPPNFCNQMSNLESLFLKYNMFHGK 143
++ +Y N+ + F + N++S + ++ G
Sbjct: 564 KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGH 623
Query: 144 IPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELE 203
T + + L +S N SG IPKEIG++ L LNL N + G IP+E+G+L L
Sbjct: 624 TSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLN 683
Query: 204 MLWLQNNSLTGTIPXXXXXXXXXXXXXXXXXXFTGIIPSSIGNLSSLQKLYLSDNQLSGE 263
+L L +N L G IP ++ L+ L ++ LS+N LSG
Sbjct: 684 ILDLSSNKLDGR------------------------IPQAMSALTMLTEIDLSNNNLSGP 719
Query: 264 LP 265
+P
Sbjct: 720 IP 721
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 67/163 (41%), Gaps = 5/163 (3%)
Query: 32 LAKNWNTSSSFCYWTGVTCDVRSHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWF 91
+A N+ + Y H L L G +L LS+ +++ +
Sbjct: 565 IAANFIAGKRYVYIKNDGMKKECHGAGNL----LEFQGIRSEQLNRLSTRNPCNITSRVY 620
Query: 92 YGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSC 151
G + N S++ + + N L G +P M L L L +N G IP +
Sbjct: 621 GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI-GSMPYLFILNLGHNDISGSIPDEVGDL 679
Query: 152 KQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPE 194
+ L L LSSN G IP+ + LT LT ++L N L G IPE
Sbjct: 680 RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 101 bits (252), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 100/335 (29%), Positives = 152/335 (45%), Gaps = 38/335 (11%)
Query: 13 DQQALLVLKAHVTDDPTNFLAKNWNTSSSFC--YWTGVTCDV--RSHRVAALNISGLNLT 68
D+QALL +K + +PT +W ++ C W GV CD +++RV L++SGLNL
Sbjct: 7 DKQALLQIKKDL-GNPTTL--SSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLP 63
Query: 69 GT--IPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQ 126
IPS LANL L L + G I N L G +PP +
Sbjct: 64 KPYPIPSSLANLPYLNFL------YIGGI-----------------NNLVGPIPPAIA-K 99
Query: 127 MSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQN 186
++ L L++ + G IP LS K L L S N SGT+P I +L L + N
Sbjct: 100 LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159
Query: 187 KLQGEIPEELGNLAEL-EMLWLQNNSLTGTIPXXXXXXXXXXXXXXXXXXFTGIIPSSIG 245
++ G IP+ G+ ++L + + N LTG IP G G
Sbjct: 160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIP-PTFANLNLAFVDLSRNMLEGDASVLFG 218
Query: 246 NLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLD 305
+ + QK++L+ N L+ +L +G + +L L L N G +P+ + L L L +
Sbjct: 219 SDKNTQKIHLAKNSLAFDL-GKVGLS-KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276
Query: 306 QNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAP 340
N L G+IP GNL++ + ++NK + P P
Sbjct: 277 FNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPLP 310
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 55/125 (44%), Gaps = 24/125 (19%)
Query: 240 IPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKL 299
IPSS+ NL L LY+ +N+ G IP I LT+L
Sbjct: 68 IPSSLANLPYLNFLYIGG------------------------INNLVGPIPPAIAKLTQL 103
Query: 300 TDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSG 359
LY+ + G IP + ++ L L S+N L G +P I +L L+ + N +SG
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163
Query: 360 SLPSS 364
++P S
Sbjct: 164 AIPDS 168
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 84/303 (27%), Positives = 136/303 (44%), Gaps = 53/303 (17%)
Query: 73 SELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLES 132
S L+ L+SLQ L S N P + N+++L + ++N + + +++NLES
Sbjct: 145 SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSD---ISVLAKLTNLES 199
Query: 133 LFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIG---NLTKLTRLNLRQNKLQ 189
L N P L L ELSL+ N K+IG +LT LT L+L N++
Sbjct: 200 LIATNNQISDITP--LGILTNLDELSLNGNQL-----KDIGTLASLTNLTDLDLANNQIS 252
Query: 190 GEIPEELGNLAELEMLWLQNNSLTGTIPXXXXXXXXXXXXXXXXXXFTGIIPSSIGNLSS 249
P L L +L L L N ++ P + L++
Sbjct: 253 NLAP--LSGLTKLTELKLGANQISNISP--------------------------LAGLTA 284
Query: 250 LQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKL 309
L L L++NQL P + NL +L L+LY N+ S P + +LTKL L+ NK+
Sbjct: 285 LTNLELNENQLEDISPIS---NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKV 339
Query: 310 QGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGS-LPSSADVP 368
+ NL + WL HN++ + P+ NL+ + L L++ + + + + A+V
Sbjct: 340 SDV--SSLANLTNINWLSAGHNQISDL--TPLANLTRITQLGLNDQAWTNAPVNYKANVS 395
Query: 369 LPN 371
+PN
Sbjct: 396 IPN 398
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 81/312 (25%), Positives = 136/312 (43%), Gaps = 56/312 (17%)
Query: 66 NLTGTIP-SELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFC 124
N+T T+ ++L +++LQA L G + +++L I F+NN L P
Sbjct: 30 NVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDITP---L 81
Query: 125 NQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLR 184
++ L + + N P L++ L L+L +N + P + NLT L RL L
Sbjct: 82 KNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELS 137
Query: 185 QNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPXXXXXXXXXXXXXXXXXXFTGIIPSSI 244
N + L L L+ L +N +T P +
Sbjct: 138 SNTISD--ISALSGLTSLQQLSFSSNQVTDLKP--------------------------L 169
Query: 245 GNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYL 304
NL++L++L +S N++S ++ L +L++L N S P +G LT L +L L
Sbjct: 170 ANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSL 224
Query: 305 DQNKLQGKIPHEIGNLRKLEWLM---LSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSL 361
+ N+L+ +IG L L L L++N++ + AP+ L+ L L+L N +S
Sbjct: 225 NGNQLK-----DIGTLASLTNLTDLDLANNQISNL--APLSGLTKLTELKLGANQISNIS 277
Query: 362 PSSADVPLPNLE 373
P + L NLE
Sbjct: 278 PLAGLTALTNLE 289
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 98/224 (43%), Gaps = 20/224 (8%)
Query: 154 LRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLT 213
L +++ S+N + P + NLTKL + + N++ P L NL L L L NN +T
Sbjct: 65 LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT 120
Query: 214 GTIPXXXXXXXXXXXXXXXXXXFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLP 273
P + I S++ L+SLQ+L S NQ++ P NL
Sbjct: 121 DIDPLKNLTNLNRLELSSNT--ISDI--SALSGLTSLQQLSFSSNQVTDLKPL---ANLT 173
Query: 274 SLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKL 333
+L+ L + N S + LT L L N++ P +G L L+ L L+ N+L
Sbjct: 174 TLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL 229
Query: 334 VGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFL 377
+ + +L+ L L L NN +S P S L L EL L
Sbjct: 230 KDI--GTLASLTNLTDLDLANNQISNLAPLSG---LTKLTELKL 268
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 84/303 (27%), Positives = 137/303 (45%), Gaps = 53/303 (17%)
Query: 73 SELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLES 132
S L+ L+SLQ L+ S N P + N+++L + ++N + + +++NLES
Sbjct: 145 SALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSD---ISVLAKLTNLES 199
Query: 133 LFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIG---NLTKLTRLNLRQNKLQ 189
L N P L L ELSL+ N K+IG +LT LT L+L N++
Sbjct: 200 LIATNNQISDITP--LGILTNLDELSLNGNQL-----KDIGTLASLTNLTDLDLANNQIS 252
Query: 190 GEIPEELGNLAELEMLWLQNNSLTGTIPXXXXXXXXXXXXXXXXXXFTGIIPSSIGNLSS 249
P L L +L L L N ++ P + L++
Sbjct: 253 NLAP--LSGLTKLTELKLGANQISNISP--------------------------LAGLTA 284
Query: 250 LQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKL 309
L L L++NQL P + NL +L L+LY N+ S P + +LTKL L+ NK+
Sbjct: 285 LTNLELNENQLEDISPIS---NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV 339
Query: 310 QGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGS-LPSSADVP 368
+ NL + WL HN++ + P+ NL+ + L L++ + + + + A+V
Sbjct: 340 SDV--SSLANLTNINWLSAGHNQISDL--TPLANLTRITQLGLNDQAWTNAPVNYKANVS 395
Query: 369 LPN 371
+PN
Sbjct: 396 IPN 398
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 81/312 (25%), Positives = 136/312 (43%), Gaps = 56/312 (17%)
Query: 66 NLTGTIP-SELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFC 124
N+T T+ ++L +++LQA L G + +++L I F+NN L P
Sbjct: 30 NVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDITP---L 81
Query: 125 NQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLR 184
++ L + + N P L++ L L+L +N + P + NLT L RL L
Sbjct: 82 KNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELS 137
Query: 185 QNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPXXXXXXXXXXXXXXXXXXFTGIIPSSI 244
N + L L L+ L +N +T P +
Sbjct: 138 SNTISD--ISALSGLTSLQQLNFSSNQVTDLKP--------------------------L 169
Query: 245 GNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYL 304
NL++L++L +S N++S ++ L +L++L N S P +G LT L +L L
Sbjct: 170 ANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSL 224
Query: 305 DQNKLQGKIPHEIGNLRKLEWLM---LSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSL 361
+ N+L+ +IG L L L L++N++ + AP+ L+ L L+L N +S
Sbjct: 225 NGNQLK-----DIGTLASLTNLTDLDLANNQISNL--APLSGLTKLTELKLGANQISNIS 277
Query: 362 PSSADVPLPNLE 373
P + L NLE
Sbjct: 278 PLAGLTALTNLE 289
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 98/224 (43%), Gaps = 20/224 (8%)
Query: 154 LRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLT 213
L +++ S+N + P + NLTKL + + N++ P L NL L L L NN +T
Sbjct: 65 LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT 120
Query: 214 GTIPXXXXXXXXXXXXXXXXXXFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLP 273
P + I S++ L+SLQ+L S NQ++ P NL
Sbjct: 121 DIDPLKNLTNLNRLELSSNT--ISDI--SALSGLTSLQQLNFSSNQVTDLKPL---ANLT 173
Query: 274 SLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKL 333
+L+ L + N S + LT L L N++ P +G L L+ L L+ N+L
Sbjct: 174 TLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL 229
Query: 334 VGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFL 377
+ + +L+ L L L NN +S P S L L EL L
Sbjct: 230 KDI--GTLASLTNLTDLDLANNQISNLAPLSG---LTKLTELKL 268
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 84/303 (27%), Positives = 136/303 (44%), Gaps = 53/303 (17%)
Query: 73 SELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLES 132
S L+ L+SLQ L S N P + N+++L + ++N + + +++NLES
Sbjct: 145 SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSD---ISVLAKLTNLES 199
Query: 133 LFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIG---NLTKLTRLNLRQNKLQ 189
L N P L L ELSL+ N K+IG +LT LT L+L N++
Sbjct: 200 LIATNNQISDITP--LGILTNLDELSLNGNQL-----KDIGTLASLTNLTDLDLANNQIS 252
Query: 190 GEIPEELGNLAELEMLWLQNNSLTGTIPXXXXXXXXXXXXXXXXXXFTGIIPSSIGNLSS 249
P L L +L L L N ++ P + L++
Sbjct: 253 NLAP--LSGLTKLTELKLGANQISNISP--------------------------LAGLTA 284
Query: 250 LQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKL 309
L L L++NQL P + NL +L L+LY N+ S P + +LTKL L+ NK+
Sbjct: 285 LTNLELNENQLEDISPIS---NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV 339
Query: 310 QGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGS-LPSSADVP 368
+ NL + WL HN++ + P+ NL+ + L L++ + + + + A+V
Sbjct: 340 SDV--SSLANLTNINWLSAGHNQISDL--TPLANLTRITQLGLNDQAWTNAPVNYKANVS 395
Query: 369 LPN 371
+PN
Sbjct: 396 IPN 398
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 81/312 (25%), Positives = 136/312 (43%), Gaps = 56/312 (17%)
Query: 66 NLTGTIP-SELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFC 124
N+T T+ ++L +++LQA L G + +++L I F+NN L P
Sbjct: 30 NVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDITP---L 81
Query: 125 NQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLR 184
++ L + + N P L++ L L+L +N + P + NLT L RL L
Sbjct: 82 KNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELS 137
Query: 185 QNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPXXXXXXXXXXXXXXXXXXFTGIIPSSI 244
N + L L L+ L +N +T P +
Sbjct: 138 SNTISD--ISALSGLTSLQQLSFSSNQVTDLKP--------------------------L 169
Query: 245 GNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYL 304
NL++L++L +S N++S ++ L +L++L N S P +G LT L +L L
Sbjct: 170 ANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSL 224
Query: 305 DQNKLQGKIPHEIGNLRKLEWLM---LSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSL 361
+ N+L+ +IG L L L L++N++ + AP+ L+ L L+L N +S
Sbjct: 225 NGNQLK-----DIGTLASLTNLTDLDLANNQISNL--APLSGLTKLTELKLGANQISNIS 277
Query: 362 PSSADVPLPNLE 373
P + L NLE
Sbjct: 278 PLAGLTALTNLE 289
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 98/224 (43%), Gaps = 20/224 (8%)
Query: 154 LRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLT 213
L +++ S+N + P + NLTKL + + N++ P L NL L L L NN +T
Sbjct: 65 LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT 120
Query: 214 GTIPXXXXXXXXXXXXXXXXXXFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLP 273
P + I S++ L+SLQ+L S NQ++ P NL
Sbjct: 121 DIDPLKNLTNLNRLELSSNT--ISDI--SALSGLTSLQQLSFSSNQVTDLKPL---ANLT 173
Query: 274 SLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKL 333
+L+ L + N S + LT L L N++ P +G L L+ L L+ N+L
Sbjct: 174 TLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL 229
Query: 334 VGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFL 377
+ + +L+ L L L NN +S P S L L EL L
Sbjct: 230 KDI--GTLASLTNLTDLDLANNQISNLAPLSG---LTKLTELKL 268
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 112/250 (44%), Gaps = 48/250 (19%)
Query: 126 QMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIG---NLTKLTRLN 182
+++NLESL N P L L ELSL+ N K+IG +LT LT L+
Sbjct: 192 KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL-----KDIGTLASLTNLTDLD 244
Query: 183 LRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPXXXXXXXXXXXXXXXXXXFTGIIPS 242
L N++ P L L +L L L N ++ P
Sbjct: 245 LANNQISNLAP--LSGLTKLTELKLGANQISNISP------------------------- 277
Query: 243 SIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDL 302
+ L++L L L++NQL P + NL +L L+LY N+ S P + +LTKL L
Sbjct: 278 -LAGLTALTNLELNENQLEDISPIS---NLKNLTYLTLYFNNISDISP--VSSLTKLQRL 331
Query: 303 YLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGS-L 361
+ NK+ + NL + WL HN++ + P+ NL+ + L L++ + + + +
Sbjct: 332 FFSNNKVSDV--SSLANLTNINWLSAGHNQISDL--TPLANLTRITQLGLNDQAWTNAPV 387
Query: 362 PSSADVPLPN 371
A+V +PN
Sbjct: 388 NYKANVSIPN 397
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 115/250 (46%), Gaps = 26/250 (10%)
Query: 127 MSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQN 186
++NL + N P L + +L ++ +++N + P + NLT LT L L N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 187 KLQGEIPEELGNLAELEMLWLQNNSLTGTIPXXXXXXXXXXXXXXXXXXFTGIIPSSIGN 246
++ P L NL L L L +N+++ T + P + N
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTISD---ISALSGLTSLQQLNFGNQVTDLKP--LAN 170
Query: 247 LSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQ 306
L++L++L +S N++S ++ L +L++L N S P +G LT L +L L+
Sbjct: 171 LTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNG 225
Query: 307 NKLQGKIPHEIGNLRKLEWLM---LSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPS 363
N+L+ +IG L L L L++N++ + AP+ L+ L L+L N +S P
Sbjct: 226 NQLK-----DIGTLASLTNLTDLDLANNQISNL--APLSGLTKLTELKLGANQISNISPL 278
Query: 364 SADVPLPNLE 373
+ L NLE
Sbjct: 279 AGLTALTNLE 288
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 112/250 (44%), Gaps = 48/250 (19%)
Query: 126 QMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIG---NLTKLTRLN 182
+++NLESL N P L L ELSL+ N K+IG +LT LT L+
Sbjct: 196 KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL-----KDIGTLASLTNLTDLD 248
Query: 183 LRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPXXXXXXXXXXXXXXXXXXFTGIIPS 242
L N++ P L L +L L L N ++ P
Sbjct: 249 LANNQISNLAP--LSGLTKLTELKLGANQISNISP------------------------- 281
Query: 243 SIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDL 302
+ L++L L L++NQL P + NL +L L+LY N+ S P + +LTKL L
Sbjct: 282 -LAGLTALTNLELNENQLEDISPIS---NLKNLTYLTLYFNNISDISP--VSSLTKLQRL 335
Query: 303 YLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGS-L 361
+ NK+ + NL + WL HN++ + P+ NL+ + L L++ + + + +
Sbjct: 336 FFANNKVSDV--SSLANLTNINWLSAGHNQISDL--TPLANLTRITQLGLNDQAWTNAPV 391
Query: 362 PSSADVPLPN 371
A+V +PN
Sbjct: 392 NYKANVSIPN 401
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 81/312 (25%), Positives = 135/312 (43%), Gaps = 57/312 (18%)
Query: 66 NLTGTIP-SELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFC 124
N+T T+ ++L +++LQA L G + +++L I F+NN L P
Sbjct: 34 NVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDITP---L 85
Query: 125 NQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLR 184
++ L + + N P L++ L L+L +N + P + NLT L RL L
Sbjct: 86 KNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELS 141
Query: 185 QNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPXXXXXXXXXXXXXXXXXXFTGIIPSSI 244
N + L L L+ L N T + P +
Sbjct: 142 SNTISD--ISALSGLTSLQQLSFGN-------------------------QVTDLKP--L 172
Query: 245 GNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYL 304
NL++L++L +S N++S ++ L +L++L N S P +G LT L +L L
Sbjct: 173 ANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSL 227
Query: 305 DQNKLQGKIPHEIGNLRKLEWLM---LSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSL 361
+ N+L+ +IG L L L L++N++ + AP+ L+ L L+L N +S
Sbjct: 228 NGNQLK-----DIGTLASLTNLTDLDLANNQISNL--APLSGLTKLTELKLGANQISNIS 280
Query: 362 PSSADVPLPNLE 373
P + L NLE
Sbjct: 281 PLAGLTALTNLE 292
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 112/250 (44%), Gaps = 48/250 (19%)
Query: 126 QMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIG---NLTKLTRLN 182
+++NLESL N P L L ELSL+ N K+IG +LT LT L+
Sbjct: 192 KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL-----KDIGTLASLTNLTDLD 244
Query: 183 LRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPXXXXXXXXXXXXXXXXXXFTGIIPS 242
L N++ P L L +L L L N ++ P
Sbjct: 245 LANNQISNLAP--LSGLTKLTELKLGANQISNISP------------------------- 277
Query: 243 SIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDL 302
+ L++L L L++NQL P + NL +L L+LY N+ S P + +LTKL L
Sbjct: 278 -LAGLTALTNLELNENQLEDISPIS---NLKNLTYLTLYFNNISDISP--VSSLTKLQRL 331
Query: 303 YLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGS-L 361
+ NK+ + NL + WL HN++ + P+ NL+ + L L++ + + + +
Sbjct: 332 FFYNNKVSDV--SSLANLTNINWLSAGHNQISDL--TPLANLTRITQLGLNDQAWTNAPV 387
Query: 362 PSSADVPLPN 371
A+V +PN
Sbjct: 388 NYKANVSIPN 397
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 115/250 (46%), Gaps = 26/250 (10%)
Query: 127 MSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQN 186
++NL + N P L + +L ++ +++N + P + NLT LT L L N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 187 KLQGEIPEELGNLAELEMLWLQNNSLTGTIPXXXXXXXXXXXXXXXXXXFTGIIPSSIGN 246
++ P L NL L L L +N+++ T + P + N
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTISD---ISALSGLTSLQQLNFGNQVTDLKP--LAN 170
Query: 247 LSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQ 306
L++L++L +S N++S ++ L +L++L N S P +G LT L +L L+
Sbjct: 171 LTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNG 225
Query: 307 NKLQGKIPHEIGNLRKLEWLM---LSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPS 363
N+L+ +IG L L L L++N++ + AP+ L+ L L+L N +S P
Sbjct: 226 NQLK-----DIGTLASLTNLTDLDLANNQISNL--APLSGLTKLTELKLGANQISNISPL 278
Query: 364 SADVPLPNLE 373
+ L NLE
Sbjct: 279 AGLTALTNLE 288
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 112/250 (44%), Gaps = 48/250 (19%)
Query: 126 QMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIG---NLTKLTRLN 182
+++NLESL N P L L ELSL+ N K+IG +LT LT L+
Sbjct: 197 KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL-----KDIGTLASLTNLTDLD 249
Query: 183 LRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPXXXXXXXXXXXXXXXXXXFTGIIPS 242
L N++ P L L +L L L N ++ P
Sbjct: 250 LANNQISNLAP--LSGLTKLTELKLGANQISNISP------------------------- 282
Query: 243 SIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDL 302
+ L++L L L++NQL P + NL +L L+LY N+ S P + +LTKL L
Sbjct: 283 -LAGLTALTNLELNENQLEDISPIS---NLKNLTYLTLYFNNISDISP--VSSLTKLQRL 336
Query: 303 YLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGS-L 361
+ NK+ + NL + WL HN++ + P+ NL+ + L L++ + + + +
Sbjct: 337 FFYNNKVSDV--SSLANLTNINWLSAGHNQISDL--TPLANLTRITQLGLNDQAWTNAPV 392
Query: 362 PSSADVPLPN 371
A+V +PN
Sbjct: 393 NYKANVSIPN 402
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 81/312 (25%), Positives = 135/312 (43%), Gaps = 57/312 (18%)
Query: 66 NLTGTIP-SELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFC 124
N+T T+ ++L +++LQA L G + +++L I F+NN L P
Sbjct: 35 NVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDITP---L 86
Query: 125 NQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLR 184
++ L + + N P L++ L L+L +N + P + NLT L RL L
Sbjct: 87 KNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELS 142
Query: 185 QNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPXXXXXXXXXXXXXXXXXXFTGIIPSSI 244
N + L L L+ L N T + P +
Sbjct: 143 SNTISD--ISALSGLTSLQQLSFGN-------------------------QVTDLKP--L 173
Query: 245 GNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYL 304
NL++L++L +S N++S ++ L +L++L N S P +G LT L +L L
Sbjct: 174 ANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSL 228
Query: 305 DQNKLQGKIPHEIGNLRKLEWLM---LSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSL 361
+ N+L+ +IG L L L L++N++ + AP+ L+ L L+L N +S
Sbjct: 229 NGNQLK-----DIGTLASLTNLTDLDLANNQISNL--APLSGLTKLTELKLGANQISNIS 281
Query: 362 PSSADVPLPNLE 373
P + L NLE
Sbjct: 282 PLAGLTALTNLE 293
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 70/248 (28%), Positives = 98/248 (39%), Gaps = 51/248 (20%)
Query: 131 ESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQN-KLQ 189
+ +FL N ++ SC+ L L L SN +G LT L +L+L N +L+
Sbjct: 34 QRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLR 93
Query: 190 GEIPEELGNLAELEMLWLQNNSLTGTIPXXXXXXXXXXXXXXXXXXFTGIIPSSIGNLSS 249
P L L L L L P F G L++
Sbjct: 94 VVDPTTFRGLGHLHTLHLDRCGLQELGP----------------GLFRG--------LAA 129
Query: 250 LQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKL 309
LQ LYL DN L LP N F +++GNLT L+L N++
Sbjct: 130 LQYLYLQDNNLQA---------LPD--------NTF-----RDLGNLTH---LFLHGNRI 164
Query: 310 QGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPL 369
H L L+ L+L N + V P +L L++L L N+LS LP+ VPL
Sbjct: 165 PSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLS-MLPAEVLVPL 223
Query: 370 PNLEELFL 377
+L+ L L
Sbjct: 224 RSLQYLRL 231
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 60/148 (40%), Gaps = 2/148 (1%)
Query: 67 LTGTIPSELANLSSLQALDLSFNWFYGSI-PSSIFNMSSLLSIYFNNNTLFGELPPNFCN 125
L G + L+ L+ LDLS N + P++ + L +++ + L EL P
Sbjct: 67 LAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGL-QELGPGLFR 125
Query: 126 QMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQ 185
++ L+ L+L+ N +T L L L N L L RL L Q
Sbjct: 126 GLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQ 185
Query: 186 NKLQGEIPEELGNLAELEMLWLQNNSLT 213
N + P +L L L+L N+L+
Sbjct: 186 NHVARVHPHAFRDLGRLMTLYLFANNLS 213
Score = 35.0 bits (79), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 50/139 (35%), Gaps = 1/139 (0%)
Query: 72 PSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLE 131
P+ L L L L P +++L +Y +N L LP N + NL
Sbjct: 97 PTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNL-QALPDNTFRDLGNLT 155
Query: 132 SLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGE 191
LFL N L L L N+ + P +L +L L L N L
Sbjct: 156 HLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSML 215
Query: 192 IPEELGNLAELEMLWLQNN 210
E L L L+ L L +N
Sbjct: 216 PAEVLVPLRSLQYLRLNDN 234
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 100/227 (44%), Gaps = 30/227 (13%)
Query: 167 TIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPXXXXXXXXX 226
IP I TK +L+L+ NKL + L +L +L+L +N L T+P
Sbjct: 30 AIPSNIPADTK--KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLP--------- 77
Query: 227 XXXXXXXXXFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFS 286
GI L +L+ L+++DN+L LP + + L +L L L N
Sbjct: 78 ----------AGIFKE----LKNLETLWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLK 122
Query: 287 GAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLST 346
P+ +LTKLT L L N+LQ L L+ L L +N+L V L+
Sbjct: 123 SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTE 182
Query: 347 LISLQLHNNSLSGSLPSSADVPLPNLEELFLWEYGREGRVSTNGDIY 393
L +L+L NN L +P A L L+ L L E + + NG IY
Sbjct: 183 LKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQENPWD--CTCNGIIY 226
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 101/244 (41%), Gaps = 32/244 (13%)
Query: 41 SFCYWTGVTCDVRSHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIF 100
+ C G C +++ +++ S LT IPS + + + LDL N S+PS F
Sbjct: 3 ALCKKDGGVCSCNNNK-NSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKL-SSLPSKAF 57
Query: 101 N-MSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSL 159
+ ++ L +Y N+N L LP ++ NLE+L++ N L EL L
Sbjct: 58 HRLTKLRLLYLNDNKL-QTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL 116
Query: 160 SSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPXX 219
N P+ +LTKLT L+L N+LQ L L+ L L NN L +P
Sbjct: 117 DRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK-RVPE- 174
Query: 220 XXXXXXXXXXXXXXXXFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLS 279
+ L+ L+ L L +NQL +P ++L L+ L
Sbjct: 175 ----------------------GAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQ 211
Query: 280 LYVN 283
L N
Sbjct: 212 LQEN 215
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 87/226 (38%), Gaps = 26/226 (11%)
Query: 131 ESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQN-KLQ 189
+ +FL N ++ +C+ L L L SN + L L +L+L N +L+
Sbjct: 34 QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 93
Query: 190 GEIPEELGNLAELEMLWLQNNSLTGTIPXXXXXXXXXXXXXXXXXXFTGIIPSSIGNLSS 249
P L L L L L P F G L++
Sbjct: 94 SVDPATFHGLGRLHTLHLDRCGLQELGP----------------GLFRG--------LAA 129
Query: 250 LQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKL 309
LQ LYL DN L LP + +L +L L L+ N S + L L L L QN++
Sbjct: 130 LQYLYLQDNALQA-LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 188
Query: 310 QGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNN 355
PH +L +L L L N L + + L L L+L++N
Sbjct: 189 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 2/143 (1%)
Query: 73 SELANLSSLQALDLSFNWFYGSI-PSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLE 131
+ L+ L+ LDLS N S+ P++ + L +++ + L EL P ++ L+
Sbjct: 73 AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL-QELGPGLFRGLAALQ 131
Query: 132 SLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGE 191
L+L+ N T L L L N S + L L RL L QN++
Sbjct: 132 YLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 191
Query: 192 IPEELGNLAELEMLWLQNNSLTG 214
P +L L L+L N+L+
Sbjct: 192 HPHAFRDLGRLMTLYLFANNLSA 214
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 87/226 (38%), Gaps = 26/226 (11%)
Query: 131 ESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQN-KLQ 189
+ +FL N ++ +C+ L L L SN + L L +L+L N +L+
Sbjct: 35 QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 94
Query: 190 GEIPEELGNLAELEMLWLQNNSLTGTIPXXXXXXXXXXXXXXXXXXFTGIIPSSIGNLSS 249
P L L L L L P F G L++
Sbjct: 95 SVDPATFHGLGRLHTLHLDRCGLQELGP----------------GLFRG--------LAA 130
Query: 250 LQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKL 309
LQ LYL DN L LP + +L +L L L+ N S + L L L L QN++
Sbjct: 131 LQYLYLQDNALQA-LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189
Query: 310 QGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNN 355
PH +L +L L L N L + + L L L+L++N
Sbjct: 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 2/143 (1%)
Query: 73 SELANLSSLQALDLSFNWFYGSI-PSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLE 131
+ L+ L+ LDLS N S+ P++ + L +++ + L EL P ++ L+
Sbjct: 74 AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL-QELGPGLFRGLAALQ 132
Query: 132 SLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGE 191
L+L+ N T L L L N S + L L RL L QN++
Sbjct: 133 YLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192
Query: 192 IPEELGNLAELEMLWLQNNSLTG 214
P +L L L+L N+L+
Sbjct: 193 HPHAFRDLGRLMTLYLFANNLSA 215
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 61/135 (45%), Gaps = 3/135 (2%)
Query: 84 LDLSFNWFYGSIPSSIFN-MSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHG 142
LDL N S+P+ +F+ ++SL +Y N L LP N++++L L L N
Sbjct: 33 LDLETNSLK-SLPNGVFDELTSLTQLYLGGNKL-QSLPNGVFNKLTSLTYLNLSTNQLQS 90
Query: 143 KIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAEL 202
QL+EL+L++N LT+L L L QN+L+ L L
Sbjct: 91 LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 150
Query: 203 EMLWLQNNSLTGTIP 217
+ +WL +N T P
Sbjct: 151 QYIWLHDNPWDCTCP 165
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Query: 247 LSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQ 306
L+SL +LYL N+L LP + N L SL L+L N LT+L +L L+
Sbjct: 51 LTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNT 109
Query: 307 NKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFN-LSTLISLQLHNNSLSGSLP 362
N+LQ L +L+ L L N+L VP +F+ L++L + LH+N + P
Sbjct: 110 NQLQSLPDGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCP 165
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 63/131 (48%), Gaps = 8/131 (6%)
Query: 296 LTKLTDLYLDQNKLQGKIPHEIGN-LRKLEWLMLSHNKLVGVVPAPIFN-LSTLISLQLH 353
LT LT LYL NKLQ +P+ + N L L +L LS N+L +P +F+ L+ L L L+
Sbjct: 51 LTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQS-LPNGVFDKLTQLKELALN 108
Query: 354 NNSLSGSLPSSADVPLPNLEELFLWEYGREGRVSTNGDIYNFGIMIMETFTAKKPTDEIF 413
N L SLP L L++L L++ + S +++ + + P D
Sbjct: 109 TNQLQ-SLPDGVFDKLTQLKDLRLYQNQLK---SVPDGVFDRLTSLQYIWLHDNPWDCTC 164
Query: 414 NGEMTLRRWVN 424
G L W+N
Sbjct: 165 PGIRYLSEWIN 175
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 60/118 (50%), Gaps = 5/118 (4%)
Query: 264 LPANIGNNLPSLQTLSLYVNDFSGAIPKEIGN-LTKLTDLYLDQNKLQGKIPHEIGNLRK 322
LP + + L SL L L N ++P + N LT LT L L N+LQ L +
Sbjct: 43 LPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQ 101
Query: 323 LEWLMLSHNKLVGVVPAPIFN-LSTLISLQLHNNSLSGSLPSSADVPLPNLEELFLWE 379
L+ L L+ N+L +P +F+ L+ L L+L+ N L S+P L +L+ ++L +
Sbjct: 102 LKELALNTNQLQS-LPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHD 157
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 56/111 (50%), Gaps = 5/111 (4%)
Query: 82 QALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFH 141
ALDLS N +I ++IF L +Y N N+L ELP N +SNL L L +N
Sbjct: 227 HALDLS-NLQIFNISANIFKYDFLTRLYLNGNSL-TELPAEIKN-LSNLRVLDLSHNRL- 282
Query: 142 GKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEI 192
+P+ L SC QL+ N + T+P E GNL L L + N L+ +
Sbjct: 283 TSLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQF 332
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 62/146 (42%), Gaps = 41/146 (28%)
Query: 178 LTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPXXXXXXXXXXXXXXXXXXFT 237
LTRL L N L E+P E+ NL+ L +L L +N LT
Sbjct: 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS----------------------- 284
Query: 238 GIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLT 297
+P+ +G+ L+ Y DN ++ LP G NL +LQ L + N P E L
Sbjct: 285 --LPAELGSCFQLKYFYFFDNMVT-TLPWEFG-NLCNLQFLGVEGN------PLEKQFLK 334
Query: 298 KLTD-------LYLDQNKLQGKIPHE 316
LT+ YL N+ + +PHE
Sbjct: 335 ILTEKSVTGLIFYLRDNRPEIPLPHE 360
Score = 35.0 bits (79), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 69/177 (38%), Gaps = 32/177 (18%)
Query: 168 IPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPXXXXXXXXXX 227
+P EI NL+ L L+L N+L +P ELG+ +L+ + +N +T
Sbjct: 262 LPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMVT-------------- 306
Query: 228 XXXXXXXXFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSG 287
+P GNL +LQ L + N L + + S+ L Y+ D
Sbjct: 307 -----------TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEK--SVTGLIFYLRDNRP 353
Query: 288 AIP----KEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAP 340
IP + + + + + LQ H +L K + +LS+N L P
Sbjct: 354 EIPLPHERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQHYATP 410
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
Query: 60 LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGEL 119
L ++G +LT +P+E+ NLS+L+ LDLS N S+P+ + + L YF +N + L
Sbjct: 252 LYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRL-TSLPAELGSCFQLKYFYFFDN-MVTTL 308
Query: 120 PPNFCNQMSNLESLFLKYN 138
P F N + NL+ L ++ N
Sbjct: 309 PWEFGN-LCNLQFLGVEGN 326
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 299 LTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPA 339
LT LYL+ N L ++P EI NL L L LSHN+L +PA
Sbjct: 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPA 287
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 62/127 (48%), Gaps = 5/127 (3%)
Query: 238 GIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLT 297
G+ G SS +L L N+L LP + + L L LSL N LT
Sbjct: 18 GLTSVPTGIPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLT 76
Query: 298 KLTDLYLDQNKLQGKIPHEI-GNLRKLEWLMLSHNKLVGVVPAPIFN-LSTLISLQLHNN 355
KLT LYL +NKLQ +P+ + L +L+ L L N+L VP IF+ L++L + LH N
Sbjct: 77 KLTILYLHENKLQS-LPNGVFDKLTQLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTN 134
Query: 356 SLSGSLP 362
S P
Sbjct: 135 PWDCSCP 141
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 28/60 (46%)
Query: 153 QLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSL 212
QL +LSLS N LTKLT L L +NKLQ L +L+ L L N L
Sbjct: 53 QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQL 112
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 68/160 (42%), Gaps = 27/160 (16%)
Query: 175 LTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPXXXXXXXXXXXXXXXXX 234
LTKLT LNL N+LQ +L EL L L NN L ++P
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLPL---------------- 100
Query: 235 XFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIG 294
G+ +L+ L KLYL NQL LP+ + + L L+ L L N
Sbjct: 101 ---GVFD----HLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFD 152
Query: 295 NLTKLTDLYLDQNKLQGKIPH-EIGNLRKLEWLMLSHNKL 333
LT L L L N+LQ +PH L KL+ + L N+
Sbjct: 153 KLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQF 191
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 65/133 (48%), Gaps = 4/133 (3%)
Query: 247 LSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQ 306
L+ L L L NQL L A + ++L L TL L N + +LT+L LYL
Sbjct: 58 LTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGG 116
Query: 307 NKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFN-LSTLISLQLHNNSLSGSLPSSA 365
N+L+ L KL+ L L+ N+L +PA F+ L+ L +L L N L S+P A
Sbjct: 117 NQLKSLPSGVFDRLTKLKELRLNTNQLQS-IPAGAFDKLTNLQTLSLSTNQLQ-SVPHGA 174
Query: 366 DVPLPNLEELFLW 378
L L+ + L+
Sbjct: 175 FDRLGKLQTITLF 187
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 59/134 (44%), Gaps = 3/134 (2%)
Query: 78 LSSLQALDLSFNWFYGSIPSSIFN-MSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLK 136
L+ L L+L +N ++ + +F+ ++ L ++ NN L LP + ++ L+ L+L
Sbjct: 58 LTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLG 115
Query: 137 YNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEEL 196
N +L+EL L++N LT L L+L N+LQ
Sbjct: 116 GNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAF 175
Query: 197 GNLAELEMLWLQNN 210
L +L+ + L N
Sbjct: 176 DRLGKLQTITLFGN 189
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 3/113 (2%)
Query: 77 NLSSLQALDLSFNWFYGSIPSSIFN-MSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFL 135
+L+ L L L+ N S+P +F+ ++ L +Y N L LP ++++ L+ L L
Sbjct: 81 DLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQL-KSLPSGVFDRLTKLKELRL 138
Query: 136 KYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKL 188
N L+ LSLS+N L KL + L N+
Sbjct: 139 NTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 68/160 (42%), Gaps = 27/160 (16%)
Query: 175 LTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPXXXXXXXXXXXXXXXXX 234
LTKLT LNL N+LQ +L EL L L NN L ++P
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLPL---------------- 100
Query: 235 XFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIG 294
G+ +L+ L KLYL NQL LP+ + + L L+ L L N
Sbjct: 101 ---GVFD----HLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFD 152
Query: 295 NLTKLTDLYLDQNKLQGKIPH-EIGNLRKLEWLMLSHNKL 333
LT L L L N+LQ +PH L KL+ + L N+
Sbjct: 153 KLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQF 191
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 65/133 (48%), Gaps = 4/133 (3%)
Query: 247 LSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQ 306
L+ L L L NQL L A + ++L L TL L N + +LT+L LYL
Sbjct: 58 LTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGG 116
Query: 307 NKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFN-LSTLISLQLHNNSLSGSLPSSA 365
N+L+ L KL+ L L+ N+L +PA F+ L+ L +L L N L S+P A
Sbjct: 117 NQLKSLPSGVFDRLTKLKELRLNTNQLQS-IPAGAFDKLTNLQTLSLSTNQLQ-SVPHGA 174
Query: 366 DVPLPNLEELFLW 378
L L+ + L+
Sbjct: 175 FDRLGKLQTITLF 187
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 59/134 (44%), Gaps = 3/134 (2%)
Query: 78 LSSLQALDLSFNWFYGSIPSSIFN-MSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLK 136
L+ L L+L +N ++ + +F+ ++ L ++ NN L LP + ++ L+ L+L
Sbjct: 58 LTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLG 115
Query: 137 YNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEEL 196
N +L+EL L++N LT L L+L N+LQ
Sbjct: 116 GNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAF 175
Query: 197 GNLAELEMLWLQNN 210
L +L+ + L N
Sbjct: 176 DRLGKLQTITLFGN 189
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 49/121 (40%), Gaps = 3/121 (2%)
Query: 77 NLSSLQALDLSFNWFYGSIPSSIFN-MSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFL 135
+L+ L L L+ N S+P +F+ ++ L +Y N L LP ++++ L+ L L
Sbjct: 81 DLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQL-KSLPSGVFDRLTKLKELRL 138
Query: 136 KYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEE 195
N L+ LSLS+N L KL + L N+ E
Sbjct: 139 NTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCET 198
Query: 196 L 196
L
Sbjct: 199 L 199
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 63/146 (43%), Gaps = 3/146 (2%)
Query: 73 SELANLSSLQALDLSFNWFYGSIPSSIFN-MSSLLSIYFNNNTLFGELPPNFCNQMSNLE 131
S L L++L L L+ N S+P+ +F+ +++L + N L LP ++++NL
Sbjct: 79 SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQL-QSLPDGVFDKLTNLT 136
Query: 132 SLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGE 191
L L +N L EL LS N LT+L L L QN+L+
Sbjct: 137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV 196
Query: 192 IPEELGNLAELEMLWLQNNSLTGTIP 217
L L+ +WL +N T P
Sbjct: 197 PDGVFDRLTSLQYIWLHDNPWDCTCP 222
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 64/118 (54%), Gaps = 5/118 (4%)
Query: 247 LSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEI-GNLTKLTDLYLD 305
L++L++L L +NQL LP + + L +L L+L N ++PK + LT LT+L L
Sbjct: 108 LTNLKELVLVENQLQS-LPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLS 165
Query: 306 QNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFN-LSTLISLQLHNNSLSGSLP 362
N+LQ L +L+ L L N+L VP +F+ L++L + LH+N + P
Sbjct: 166 YNQLQSLPEGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCP 222
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 68/139 (48%), Gaps = 4/139 (2%)
Query: 242 SSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTD 301
S++ L++L L L+ NQL LP + + L +L+ L L N LT LT
Sbjct: 79 SALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY 137
Query: 302 LYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFN-LSTLISLQLHNNSLSGS 360
L L N+LQ L L L LS+N+L +P +F+ L+ L L+L+ N L S
Sbjct: 138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLTQLKDLRLYQNQLK-S 195
Query: 361 LPSSADVPLPNLEELFLWE 379
+P L +L+ ++L +
Sbjct: 196 VPDGVFDRLTSLQYIWLHD 214
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 62/111 (55%), Gaps = 5/111 (4%)
Query: 247 LSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEI-GNLTKLTDLYLD 305
L++L++L L +NQL LP + + L +L L LY N ++PK + LT LT L LD
Sbjct: 108 LTNLKELVLVENQLQS-LPDGVFDKLTNLTYLYLYHNQLQ-SLPKGVFDKLTNLTRLDLD 165
Query: 306 QNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFN-LSTLISLQLHNN 355
N+LQ L +L+ L L+ N+L VP +F+ L++L + L NN
Sbjct: 166 NNQLQSLPEGVFDKLTQLKQLSLNDNQLKS-VPDGVFDRLTSLTHIWLLNN 215
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 3/139 (2%)
Query: 73 SELANLSSLQALDLSFNWFYGSIPSSIFN-MSSLLSIYFNNNTLFGELPPNFCNQMSNLE 131
S L L++L L L+ N S+P+ +F+ +++L + N L LP ++++NL
Sbjct: 79 SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQL-QSLPDGVFDKLTNLT 136
Query: 132 SLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGE 191
L+L +N L L L +N LT+L +L+L N+L+
Sbjct: 137 YLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSV 196
Query: 192 IPEELGNLAELEMLWLQNN 210
L L +WL NN
Sbjct: 197 PDGVFDRLTSLTHIWLLNN 215
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 66/137 (48%), Gaps = 4/137 (2%)
Query: 242 SSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTD 301
S++ L++L L L+ NQL LP + + L +L+ L L N LT LT
Sbjct: 79 SALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY 137
Query: 302 LYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFN-LSTLISLQLHNNSLSGS 360
LYL N+LQ L L L L +N+L +P +F+ L+ L L L++N L S
Sbjct: 138 LYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQS-LPEGVFDKLTQLKQLSLNDNQLK-S 195
Query: 361 LPSSADVPLPNLEELFL 377
+P L +L ++L
Sbjct: 196 VPDGVFDRLTSLTHIWL 212
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 119 LPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEI-GNLTK 177
LP ++++NL+ L L N L L L N ++PK + LT
Sbjct: 100 LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQ-SLPKGVFDKLTN 158
Query: 178 LTRLNLRQNKLQGEIPEEL-GNLAELEMLWLQNNSL 212
LTRL+L N+LQ +PE + L +L+ L L +N L
Sbjct: 159 LTRLDLDNNQLQS-LPEGVFDKLTQLKQLSLNDNQL 193
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 54/123 (43%), Gaps = 29/123 (23%)
Query: 236 FTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFS--------- 286
T + P +L +L++LYL NQL G LP + ++L L L L N +
Sbjct: 52 ITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDR 110
Query: 287 --------------GAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNK 332
+P+ I LT LT L LDQN+L+ IPH G +L L+H
Sbjct: 111 LVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLK-SIPH--GAFDRLS--SLTHAY 165
Query: 333 LVG 335
L G
Sbjct: 166 LFG 168
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 85/193 (44%), Gaps = 34/193 (17%)
Query: 240 IPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEI-GNLTK 298
+P+ I ++ Q LYL DNQ++ +L + ++L +L+ L L N GA+P + +LT+
Sbjct: 34 VPAGIP--TNAQILYLHDNQIT-KLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQ 89
Query: 299 LTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLS 358
LT L L N+L L L+ L + NKL +P I L+ L L L N L
Sbjct: 90 LTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLK 148
Query: 359 GSLPSSADVPLPNLEELFLWEYGREGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMT 418
S+P +G R+S+ Y FG P D M
Sbjct: 149 -SIP-----------------HGAFDRLSSLTHAYLFG----------NPWDCECRDIMY 180
Query: 419 LRRWVNDLLSISV 431
LR WV D SI++
Sbjct: 181 LRNWVADHTSIAM 193
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 7/127 (5%)
Query: 92 YGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIP-STLSS 150
+ S+P+ I + +L ++ N T +L P + + NL+ L+L N G +P S
Sbjct: 31 HASVPAGIPTNAQILYLHDNQIT---KLEPGVFDSLINLKELYLGSNQL-GALPVGVFDS 86
Query: 151 CKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNN 210
QL L L +N + L L L + NKL E+P + L L L L N
Sbjct: 87 LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQN 145
Query: 211 SLTGTIP 217
L +IP
Sbjct: 146 QLK-SIP 151
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 61/157 (38%), Gaps = 28/157 (17%)
Query: 128 SNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEI-GNLTKLTRLNLRQN 186
+N + L+L N P S L+EL L SN G +P + +LT+LT L+L N
Sbjct: 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTN 98
Query: 187 KLQGEIPEELGNLAELEMLWLQNNSLTGTIPXXXXXXXXXXXXXXXXXXFTGIIPSSIGN 246
+L L L+ L++ N LT +P I
Sbjct: 99 QLTVLPSAVFDRLVHLKELFMCCNKLTE-------------------------LPRGIER 133
Query: 247 LSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVN 283
L+ L L L NQL +P + L SL L+ N
Sbjct: 134 LTHLTHLALDQNQLK-SIPHGAFDRLSSLTHAYLFGN 169
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 78/298 (26%), Positives = 130/298 (43%), Gaps = 31/298 (10%)
Query: 52 VRSHRVAAL-------NISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIP----SSIF 100
V +VA++ N+ LNL G ++++ LS+L L N + G+ S++
Sbjct: 51 VAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKL---TNLYIGTNKITDISALQ 107
Query: 101 NMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLS 160
N+++L +Y N + + ++ P ++ SL L N + S LS+ L L+++
Sbjct: 108 NLTNLRELYLNEDNI-SDISP--LANLTKXYSLNLGANHNLSDL-SPLSNXTGLNYLTVT 163
Query: 161 SNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPXXX 220
+ P I NLT L L+L N+++ P L +L L N +T P
Sbjct: 164 ESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITPVAN 219
Query: 221 XXXXXXXXXXXXXXXFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSL 280
T + P + NLS L L + NQ+S N +L L+ L++
Sbjct: 220 XTRLNSLKIGNNK--ITDLSP--LANLSQLTWLEIGTNQISD---INAVKDLTKLKXLNV 272
Query: 281 YVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVP 338
N S + NL++L L+L+ N+L + IG L L L LS N + + P
Sbjct: 273 GSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRP 328
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 18/126 (14%)
Query: 242 SSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLS----LYVNDFSGAIPKEIGNLT 297
S + NL L LY+ N+++ ++ +LQ L+ LY+N+ + + + NLT
Sbjct: 82 SPLSNLVKLTNLYIGTNKIT---------DISALQNLTNLRELYLNEDNISDISPLANLT 132
Query: 298 KLTDLYLDQNK-LQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNS 356
K L L N L P + N L +L ++ +K+ V PI NL+ L SL L+ N
Sbjct: 133 KXYSLNLGANHNLSDLSP--LSNXTGLNYLTVTESKVKDV--TPIANLTDLYSLSLNYNQ 188
Query: 357 LSGSLP 362
+ P
Sbjct: 189 IEDISP 194
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 58/114 (50%), Gaps = 4/114 (3%)
Query: 245 GNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYL 304
G L L L LS NQL LP +G LP+L L + N + + L +L +LYL
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 305 DQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFN-LSTLISLQLHNNSL 357
N+L+ P + KLE L L++N+L +PA + N L L +L L NSL
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQLTE-LPAGLLNGLENLDTLLLQENSL 184
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 60/138 (43%), Gaps = 27/138 (19%)
Query: 154 LRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLT 213
L L LS N ++P L LT L++ N+L L L EL+ L+L+ N L
Sbjct: 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 214 GTIPXXXXXXXXXXXXXXXXXXFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLP 273
T+P P + L+KL L++NQL+ ELPA + N L
Sbjct: 138 -TLP-----------------------PGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLE 172
Query: 274 SLQTLSLYVNDFSGAIPK 291
+L TL L N IPK
Sbjct: 173 NLDTLLLQENSLY-TIPK 189
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 76/191 (39%), Gaps = 23/191 (12%)
Query: 5 ANTTSITTDQQALLVLKAHVTDDPTNFLAKNWNTSSSFCYWTGVTCDVRSHRVAALNISG 64
A+ + D++ L L + D T + S + Y + + R+ LN+
Sbjct: 10 ASHLEVNCDKRQLTALPPDLPKDTTIL-----HLSENLLYTFSLATLMPYTRLTQLNLDR 64
Query: 65 LNLT-----GTIPSELANLSSLQALDLSFNWFYGSIP--SSIFNMSSLLSIYFNNNTLFG 117
LT GT+P L LDLS N S+P ++L + FN T
Sbjct: 65 CELTKLQVDGTLPV-------LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT--- 113
Query: 118 ELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTK 177
LP + L+ L+LK N P L+ +L +LSL++N + + L
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLEN 173
Query: 178 LTRLNLRQNKL 188
L L L++N L
Sbjct: 174 LDTLLLQENSL 184
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 58/114 (50%), Gaps = 4/114 (3%)
Query: 245 GNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYL 304
G L L L LS NQL LP +G LP+L L + N + + L +L +LYL
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 305 DQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFN-LSTLISLQLHNNSL 357
N+L+ P + KLE L L++N+L +PA + N L L +L L NSL
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQLTE-LPAGLLNGLENLDTLLLQENSL 184
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 60/138 (43%), Gaps = 27/138 (19%)
Query: 154 LRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLT 213
L L LS N ++P L LT L++ N+L L L EL+ L+L+ N L
Sbjct: 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 214 GTIPXXXXXXXXXXXXXXXXXXFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLP 273
T+P P + L+KL L++NQL+ ELPA + N L
Sbjct: 138 -TLP-----------------------PGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLE 172
Query: 274 SLQTLSLYVNDFSGAIPK 291
+L TL L N IPK
Sbjct: 173 NLDTLLLQENSLY-TIPK 189
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 76/191 (39%), Gaps = 23/191 (12%)
Query: 5 ANTTSITTDQQALLVLKAHVTDDPTNFLAKNWNTSSSFCYWTGVTCDVRSHRVAALNISG 64
A+ + D++ L L + D T + S + Y + + R+ LN+
Sbjct: 10 ASHLEVNCDKRQLTALPPDLPKDTTIL-----HLSENLLYTFSLATLMPYTRLTQLNLDR 64
Query: 65 LNLT-----GTIPSELANLSSLQALDLSFNWFYGSIP--SSIFNMSSLLSIYFNNNTLFG 117
LT GT+P L LDLS N S+P ++L + FN T
Sbjct: 65 CELTKLQVDGTLPV-------LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT--- 113
Query: 118 ELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTK 177
LP + L+ L+LK N P L+ +L +LSL++N + + L
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLEN 173
Query: 178 LTRLNLRQNKL 188
L L L++N L
Sbjct: 174 LDTLLLQENSL 184
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 58/114 (50%), Gaps = 4/114 (3%)
Query: 245 GNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYL 304
G L L L LS NQL LP +G LP+L L + N + + L +L +LYL
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 305 DQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFN-LSTLISLQLHNNSL 357
N+L+ P + KLE L L++N+L +PA + N L L +L L NSL
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQLTE-LPAGLLNGLENLDTLLLQENSL 184
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 60/138 (43%), Gaps = 27/138 (19%)
Query: 154 LRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLT 213
L L LS N ++P L LT L++ N+L L L EL+ L+L+ N L
Sbjct: 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 214 GTIPXXXXXXXXXXXXXXXXXXFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLP 273
T+P P + L+KL L++NQL+ ELPA + N L
Sbjct: 138 -TLP-----------------------PGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLE 172
Query: 274 SLQTLSLYVNDFSGAIPK 291
+L TL L N IPK
Sbjct: 173 NLDTLLLQENSLY-TIPK 189
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 59/140 (42%), Gaps = 18/140 (12%)
Query: 56 RVAALNISGLNLT-----GTIPSELANLSSLQALDLSFNWFYGSIP--SSIFNMSSLLSI 108
R+ LN+ LT GT+P L LDLS N S+P ++L +
Sbjct: 56 RLTQLNLDRCELTKLQVDGTLPV-------LGTLDLSHNQLQ-SLPLLGQTLPALTVLDV 107
Query: 109 YFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTI 168
FN T LP + L+ L+LK N P L+ +L +LSL++N +
Sbjct: 108 SFNRLT---SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELP 164
Query: 169 PKEIGNLTKLTRLNLRQNKL 188
+ L L L L++N L
Sbjct: 165 AGLLNGLENLDTLLLQENSL 184
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 58/114 (50%), Gaps = 4/114 (3%)
Query: 245 GNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYL 304
G L L L LS NQL LP +G LP+L L + N + + L +L +LYL
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 305 DQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFN-LSTLISLQLHNNSL 357
N+L+ P + KLE L L++N+L +PA + N L L +L L NSL
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQLTE-LPAGLLNGLENLDTLLLQENSL 184
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 60/138 (43%), Gaps = 27/138 (19%)
Query: 154 LRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLT 213
L L LS N ++P L LT L++ N+L L L EL+ L+L+ N L
Sbjct: 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 214 GTIPXXXXXXXXXXXXXXXXXXFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLP 273
T+P P + L+KL L++NQL+ ELPA + N L
Sbjct: 138 -TLP-----------------------PGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLE 172
Query: 274 SLQTLSLYVNDFSGAIPK 291
+L TL L N IPK
Sbjct: 173 NLDTLLLQENSLY-TIPK 189
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 59/140 (42%), Gaps = 18/140 (12%)
Query: 56 RVAALNISGLNLT-----GTIPSELANLSSLQALDLSFNWFYGSIP--SSIFNMSSLLSI 108
R+ LN+ LT GT+P L LDLS N S+P ++L +
Sbjct: 56 RLTQLNLDRCELTKLQVDGTLPV-------LGTLDLSHNQLQ-SLPLLGQTLPALTVLDV 107
Query: 109 YFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTI 168
FN T LP + L+ L+LK N P L+ +L +LSL++N +
Sbjct: 108 SFNRLT---SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELP 164
Query: 169 PKEIGNLTKLTRLNLRQNKL 188
+ L L L L++N L
Sbjct: 165 AGLLNGLENLDTLLLQENSL 184
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 57/114 (50%), Gaps = 4/114 (3%)
Query: 245 GNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYL 304
G L L L LS NQL LP +G LP+L L + N + + L +L +LYL
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 305 DQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFN-LSTLISLQLHNNSL 357
N+L+ P + KLE L L++N L +PA + N L L +L L NSL
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNDLTE-LPAGLLNGLENLDTLLLQENSL 184
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 59/140 (42%), Gaps = 18/140 (12%)
Query: 56 RVAALNISGLNLT-----GTIPSELANLSSLQALDLSFNWFYGSIP--SSIFNMSSLLSI 108
R+ LN+ LT GT+P L LDLS N S+P ++L +
Sbjct: 56 RLTQLNLDRCELTKLQVDGTLPV-------LGTLDLSHNQLQ-SLPLLGQTLPALTVLDV 107
Query: 109 YFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTI 168
FN T LP + L+ L+LK N P L+ +L +LSL++N +
Sbjct: 108 SFNRLT---SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELP 164
Query: 169 PKEIGNLTKLTRLNLRQNKL 188
+ L L L L++N L
Sbjct: 165 AGLLNGLENLDTLLLQENSL 184
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 59/138 (42%), Gaps = 27/138 (19%)
Query: 154 LRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLT 213
L L LS N ++P L LT L++ N+L L L EL+ L+L+ N L
Sbjct: 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 214 GTIPXXXXXXXXXXXXXXXXXXFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLP 273
T+P P + L+KL L++N L+ ELPA + N L
Sbjct: 138 -TLP-----------------------PGLLTPTPKLEKLSLANNDLT-ELPAGLLNGLE 172
Query: 274 SLQTLSLYVNDFSGAIPK 291
+L TL L N IPK
Sbjct: 173 NLDTLLLQENSLY-TIPK 189
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 57/114 (50%), Gaps = 4/114 (3%)
Query: 245 GNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYL 304
G L L L LS NQL LP +G LP+L L + N + + L +L +LYL
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 305 DQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFN-LSTLISLQLHNNSL 357
N+L+ P + KLE L L++N L +PA + N L L +L L NSL
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSL 184
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 59/140 (42%), Gaps = 18/140 (12%)
Query: 56 RVAALNISGLNLT-----GTIPSELANLSSLQALDLSFNWFYGSIP--SSIFNMSSLLSI 108
R+ LN+ LT GT+P L LDLS N S+P ++L +
Sbjct: 56 RLTQLNLDRCELTKLQVDGTLPV-------LGTLDLSHNQLQ-SLPLLGQTLPALTVLDV 107
Query: 109 YFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTI 168
FN T LP + L+ L+LK N P L+ +L +LSL++N +
Sbjct: 108 SFNRLT---SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP 164
Query: 169 PKEIGNLTKLTRLNLRQNKL 188
+ L L L L++N L
Sbjct: 165 AGLLNGLENLDTLLLQENSL 184
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 59/138 (42%), Gaps = 27/138 (19%)
Query: 154 LRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLT 213
L L LS N ++P L LT L++ N+L L L EL+ L+L+ N L
Sbjct: 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 214 GTIPXXXXXXXXXXXXXXXXXXFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLP 273
T+P P + L+KL L++N L+ ELPA + N L
Sbjct: 138 -TLP-----------------------PGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLE 172
Query: 274 SLQTLSLYVNDFSGAIPK 291
+L TL L N IPK
Sbjct: 173 NLDTLLLQENSLY-TIPK 189
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 57/114 (50%), Gaps = 4/114 (3%)
Query: 245 GNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYL 304
G L L L LS NQL LP +G LP+L L + N + + L +L +LYL
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 305 DQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFN-LSTLISLQLHNNSL 357
N+L+ P + KLE L L++N L +PA + N L L +L L NSL
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSL 184
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 59/140 (42%), Gaps = 18/140 (12%)
Query: 56 RVAALNISGLNLT-----GTIPSELANLSSLQALDLSFNWFYGSIP--SSIFNMSSLLSI 108
R+ LN+ LT GT+P L LDLS N S+P ++L +
Sbjct: 56 RLTQLNLDRAELTKLQVDGTLPV-------LGTLDLSHNQLQ-SLPLLGQTLPALTVLDV 107
Query: 109 YFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTI 168
FN T LP + L+ L+LK N P L+ +L +LSL++N +
Sbjct: 108 SFNRLT---SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP 164
Query: 169 PKEIGNLTKLTRLNLRQNKL 188
+ L L L L++N L
Sbjct: 165 AGLLNGLENLDTLLLQENSL 184
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 59/138 (42%), Gaps = 27/138 (19%)
Query: 154 LRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLT 213
L L LS N ++P L LT L++ N+L L L EL+ L+L+ N L
Sbjct: 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 214 GTIPXXXXXXXXXXXXXXXXXXFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLP 273
T+P P + L+KL L++N L+ ELPA + N L
Sbjct: 138 -TLP-----------------------PGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLE 172
Query: 274 SLQTLSLYVNDFSGAIPK 291
+L TL L N IPK
Sbjct: 173 NLDTLLLQENSLY-TIPK 189
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 57/114 (50%), Gaps = 4/114 (3%)
Query: 245 GNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYL 304
G L L L LS NQL LP +G LP+L L + N + + L +L +LYL
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 305 DQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFN-LSTLISLQLHNNSL 357
N+L+ P + KLE L L++N L +PA + N L L +L L NSL
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSL 184
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 59/140 (42%), Gaps = 18/140 (12%)
Query: 56 RVAALNISGLNLT-----GTIPSELANLSSLQALDLSFNWFYGSIP--SSIFNMSSLLSI 108
R+ LN+ LT GT+P L LDLS N S+P ++L +
Sbjct: 56 RLTQLNLDRAELTKLQVDGTLPV-------LGTLDLSHNQLQ-SLPLLGQTLPALTVLDV 107
Query: 109 YFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTI 168
FN T LP + L+ L+LK N P L+ +L +LSL++N +
Sbjct: 108 SFNRLT---SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP 164
Query: 169 PKEIGNLTKLTRLNLRQNKL 188
+ L L L L++N L
Sbjct: 165 AGLLNGLENLDTLLLQENSL 184
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 59/138 (42%), Gaps = 27/138 (19%)
Query: 154 LRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLT 213
L L LS N ++P L LT L++ N+L L L EL+ L+L+ N L
Sbjct: 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 214 GTIPXXXXXXXXXXXXXXXXXXFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLP 273
T+P P + L+KL L++N L+ ELPA + N L
Sbjct: 138 -TLP-----------------------PGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLE 172
Query: 274 SLQTLSLYVNDFSGAIPK 291
+L TL L N IPK
Sbjct: 173 NLDTLLLQENSLY-TIPK 189
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 57/114 (50%), Gaps = 4/114 (3%)
Query: 245 GNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYL 304
G L L L LS NQL LP +G LP+L L + N + + L +L +LYL
Sbjct: 75 GTLPVLGTLDLSHNQLQ-SLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 132
Query: 305 DQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFN-LSTLISLQLHNNSL 357
N+L+ P + KLE L L++N L +PA + N L L +L L NSL
Sbjct: 133 KGNELKTLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSL 185
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 59/140 (42%), Gaps = 18/140 (12%)
Query: 56 RVAALNISGLNLT-----GTIPSELANLSSLQALDLSFNWFYGSIP--SSIFNMSSLLSI 108
R+ LN+ LT GT+P L LDLS N S+P ++L +
Sbjct: 57 RLTQLNLDRCELTKLQVDGTLPV-------LGTLDLSHNQLQ-SLPLLGQTLPALTVLDV 108
Query: 109 YFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTI 168
FN T LP + L+ L+LK N P L+ +L +LSL++N +
Sbjct: 109 SFNRLT---SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP 165
Query: 169 PKEIGNLTKLTRLNLRQNKL 188
+ L L L L++N L
Sbjct: 166 AGLLNGLENLDTLLLQENSL 185
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 59/138 (42%), Gaps = 27/138 (19%)
Query: 154 LRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLT 213
L L LS N ++P L LT L++ N+L L L EL+ L+L+ N L
Sbjct: 80 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 138
Query: 214 GTIPXXXXXXXXXXXXXXXXXXFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLP 273
T+P P + L+KL L++N L+ ELPA + N L
Sbjct: 139 -TLP-----------------------PGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLE 173
Query: 274 SLQTLSLYVNDFSGAIPK 291
+L TL L N IPK
Sbjct: 174 NLDTLLLQENSLY-TIPK 190
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 57/114 (50%), Gaps = 4/114 (3%)
Query: 245 GNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYL 304
G L L L LS NQL LP +G LP+L L + N + + L +L +LYL
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 305 DQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFN-LSTLISLQLHNNSL 357
N+L+ P + KLE L L++N L +PA + N L L +L L NSL
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSL 184
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 59/140 (42%), Gaps = 18/140 (12%)
Query: 56 RVAALNISGLNLT-----GTIPSELANLSSLQALDLSFNWFYGSIP--SSIFNMSSLLSI 108
R+ LN+ LT GT+P L LDLS N S+P ++L +
Sbjct: 56 RLTQLNLDRAELTKLQVDGTLPV-------LGTLDLSHNQLQ-SLPLLGQTLPALTVLDV 107
Query: 109 YFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTI 168
FN T LP + L+ L+LK N P L+ +L +LSL++N +
Sbjct: 108 SFNRLT---SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP 164
Query: 169 PKEIGNLTKLTRLNLRQNKL 188
+ L L L L++N L
Sbjct: 165 AGLLNGLENLDTLLLQENSL 184
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 59/138 (42%), Gaps = 27/138 (19%)
Query: 154 LRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLT 213
L L LS N ++P L LT L++ N+L L L EL+ L+L+ N L
Sbjct: 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 214 GTIPXXXXXXXXXXXXXXXXXXFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLP 273
T+P P + L+KL L++N L+ ELPA + N L
Sbjct: 138 -TLP-----------------------PGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLE 172
Query: 274 SLQTLSLYVNDFSGAIPK 291
+L TL L N IPK
Sbjct: 173 NLDTLLLQENSLY-TIPK 189
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 69/160 (43%), Gaps = 5/160 (3%)
Query: 60 LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIF--NMSSLLSIYFNNNTLFG 117
LN + T ++ + L LQ L L N ++ NMSSL ++ + N+L
Sbjct: 358 LNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNS 417
Query: 118 ELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTK 177
C ++ L L NM G + L +++ L L +N +IPK++ +L
Sbjct: 418 HAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQA 474
Query: 178 LTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIP 217
L LN+ N+L+ L L+ +WL +N T P
Sbjct: 475 LQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 79/188 (42%), Gaps = 27/188 (14%)
Query: 176 TKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPXXXXXXXXXXXXXXXXXX 235
+ T LN QN + + L L+ L LQ N L
Sbjct: 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMT------------- 399
Query: 236 FTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGN 295
N+SSL+ L +S N L+ S+ L+L N +G++ + +
Sbjct: 400 ---------KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP 450
Query: 296 LTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFN-LSTLISLQLHN 354
K+ DL+ N++ IP ++ +L+ L+ L ++ N+L VP +F+ L++L + LH+
Sbjct: 451 KVKVLDLH--NNRIMS-IPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHD 506
Query: 355 NSLSGSLP 362
N + P
Sbjct: 507 NPWDCTCP 514
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%)
Query: 273 PSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNK 332
P + LSL N S +I L++L L L N+++ H + LE+L +SHN+
Sbjct: 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111
Query: 333 LVGVVPAPIFNLSTL 347
L + P+ +L L
Sbjct: 112 LQNISCCPMASLRHL 126
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 272 LPSLQTLSLYVNDFSG-AIPKEIGNLTKLTDLYLDQNKLQ 310
+ SL+ L L NDF + KE GNLTKLT L L K +
Sbjct: 120 MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR 159
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 148 LSSC--KQLRELSLSSNYFSG-TIPKEIGNLTKLTRLNLRQNKLQ 189
+S C LR L LS N F + KE GNLTKLT L L K +
Sbjct: 115 ISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR 159
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 10/109 (9%)
Query: 252 KLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQG 311
+L L+DN+L + LP L L L N +G P + + +L L +NK++
Sbjct: 33 ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK- 91
Query: 312 KIPHEIGN-----LRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNN 355
EI N L +L+ L L N++ V+P +L++L SL L +N
Sbjct: 92 ----EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 35.4 bits (80), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 8/105 (7%)
Query: 263 ELPANIGNNLPSLQTLSLYVNDFS-GAIPKE--IGNLTKLTDLYLDQNKLQGKIPHEIGN 319
E+P +I L T L +ND G I + G L L L L +N+L G P+
Sbjct: 22 EIPRDI-----PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG 76
Query: 320 LRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSS 364
++ L L NK+ + L L +L L++N +S +P S
Sbjct: 77 ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGS 121
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 50/129 (38%), Gaps = 14/129 (10%)
Query: 86 LSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIP 145
+S + +G +P L+ + N L G + PN S+++ L L N
Sbjct: 44 ISSDGLFGRLPH-------LVKLELKRNQLTG-IEPNAFEGASHIQELQLGENKIKEISN 95
Query: 146 STLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEML 205
QL+ L+L N S +P +L LT LNL N L AE
Sbjct: 96 KMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC--HLAWFAE---- 149
Query: 206 WLQNNSLTG 214
WL+ SL G
Sbjct: 150 WLRKKSLNG 158
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 79/184 (42%), Gaps = 27/184 (14%)
Query: 180 RLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPXXXXXXXXXXXXXXXXXXFTGI 239
L+ N L + E G+L ELE L LQ N L
Sbjct: 328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKEL----------------------SK 365
Query: 240 IPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKL 299
I + SLQ+L +S N +S + + SL +L++ N + I + + K+
Sbjct: 366 IAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKV 425
Query: 300 TDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFN-LSTLISLQLHNNSLS 358
DL+ NK++ IP ++ L L+ L ++ N+L V P IF+ L++L + LH N
Sbjct: 426 LDLH--SNKIKS-IPKQVVKLEALQELNVASNQLKSV-PDGIFDRLTSLQKIWLHTNPWD 481
Query: 359 GSLP 362
S P
Sbjct: 482 CSCP 485
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 65/155 (41%), Gaps = 9/155 (5%)
Query: 67 LTGTIPSELANLSSLQALDLSFNWF--YGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFC 124
LT T+ +L+ L+ L L N I M SL + + N++ + C
Sbjct: 336 LTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC 395
Query: 125 NQMSNLESLFLKYNMFHGKIPSTLSSC--KQLRELSLSSNYFSGTIPKEIGNLTKLTRLN 182
+ +L SL NM + T+ C +++ L L SN +IPK++ L L LN
Sbjct: 396 SWTKSLLSL----NMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELN 450
Query: 183 LRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIP 217
+ N+L+ L L+ +WL N + P
Sbjct: 451 VASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%)
Query: 292 EIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTL 347
+I +L+KL L + N++Q ++LE+L LSHNKLV + P NL L
Sbjct: 40 DILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHL 95
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 81/191 (42%), Gaps = 39/191 (20%)
Query: 157 LSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTI 216
L L N + P + NLTK+T L L N L+ + L ++ L L + +T
Sbjct: 74 LELKDNQITDLTP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVT 129
Query: 217 PXXXXXXXXXXXXXXXXXXFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQ 276
P + LS+LQ LYL NQ++ P L +LQ
Sbjct: 130 P--------------------------LAGLSNLQVLYLDLNQITNISPL---AGLTNLQ 160
Query: 277 TLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGV 336
LS+ N + P + NL+KLT L D NK+ P + +L L + L N++ V
Sbjct: 161 YLSIGNNQVNDLTP--LANLSKLTTLRADDNKISDISP--LASLPNLIEVHLKDNQISDV 216
Query: 337 VPAPIFNLSTL 347
+P+ NLS L
Sbjct: 217 --SPLANLSNL 225
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 87/205 (42%), Gaps = 39/205 (19%)
Query: 154 LRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLT 213
L L L N + P + NLTK+T L L N L+ + L ++ L L + +T
Sbjct: 65 LIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQIT 120
Query: 214 GTIPXXXXXXXXXXXXXXXXXXFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLP 273
P + LS+LQ LYL NQ++ P L
Sbjct: 121 DVTP--------------------------LAGLSNLQVLYLDLNQITNISPL---AGLT 151
Query: 274 SLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKL 333
+LQ LS+ S P + NL+KLT L D NK+ P + +L L + L +N++
Sbjct: 152 NLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQI 207
Query: 334 VGVVPAPIFNLSTLISLQLHNNSLS 358
V +P+ N S L + L N +++
Sbjct: 208 SDV--SPLANTSNLFIVTLTNQTIT 230
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%)
Query: 289 IPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLI 348
+PKE+ N LT + L N++ N+ +L L+LS+N+L + P L +L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 349 SLQLHNNSLS 358
L LH N +S
Sbjct: 106 LLSLHGNDIS 115
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 54/120 (45%), Gaps = 6/120 (5%)
Query: 239 IIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTK 298
++P I + +LYL NQ + +P + +N L + L N S + N+T+
Sbjct: 24 VLPKGIPR--DVTELYLDGNQFT-LVPKEL-SNYKHLTLIDLSNNRISTLSNQSFSNMTQ 79
Query: 299 LTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFN-LSTLISLQLHNNSL 357
L L L N+L+ P L+ L L L H + VVP FN LS L L + N L
Sbjct: 80 LLTLILSYNRLRCIPPRTFDGLKSLRLLSL-HGNDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 129 NLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKL 188
++ L+L N F +P LS+ K L + LS+N S + N+T+L L L N+L
Sbjct: 32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90
Query: 189 QGEIPEELGNLAELEMLWLQNNSLT 213
+ P L L +L L N ++
Sbjct: 91 RCIPPRTFDGLKSLRLLSLHGNDIS 115
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 47/118 (39%), Gaps = 25/118 (21%)
Query: 71 IPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNL 130
+P EL+N L +DLS N +S+L + F+N M+ L
Sbjct: 46 VPKELSNYKHLTLIDLSNN-----------RISTLSNQSFSN--------------MTQL 80
Query: 131 ESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKL 188
+L L YN P T K LR LSL N S +L+ L+ L + N L
Sbjct: 81 LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Query: 288 AIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTL 347
IP+++ T+LYLD N+ +P E+ N + L + LS+N++ + N++ L
Sbjct: 28 GIPRDV------TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL 80
Query: 348 ISLQLHNNSLSGSLPSSAD 366
++L L N L P + D
Sbjct: 81 LTLILSYNRLRCIPPRTFD 99
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 93/235 (39%), Gaps = 35/235 (14%)
Query: 147 TLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLW 206
T + L L LS N L L L L N+L + L++L LW
Sbjct: 54 TFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELW 113
Query: 207 LQNNSLTGTIPXXXXXXXXXXXXXXXXXXFTGIIPSSIGNLSSLQKL-YLSDNQLSGELP 265
L+NN + +IP F + +L L++L Y+S+ G
Sbjct: 114 LRNNPIE-SIP---------------SYAFNRVPSLRRLDLGELKRLEYISEAAFEG--- 154
Query: 266 ANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLT---KLTDLYLDQNKLQGKIPHEIGNLRK 322
L +L+ L+L + + K+I NLT +L +L L N+L P L
Sbjct: 155 ------LVNLRYLNLGMCNL-----KDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTS 203
Query: 323 LEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFL 377
L L L H ++ + +L +L L L +N+L SLP PL LE + L
Sbjct: 204 LRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLM-SLPHDLFTPLHRLERVHL 257
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 67/256 (26%), Positives = 98/256 (38%), Gaps = 41/256 (16%)
Query: 129 NLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKL 188
N L L+ N T + L L LS N L L L L N+L
Sbjct: 36 NTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRL 95
Query: 189 QGEIPEELGNLAELEMLWLQNNSLTGTIPXXXXXXXXXXXXXXXXXXFTGIIPS----SI 244
+ L++L LWL+NN + +IP +PS +
Sbjct: 96 TTVPTQAFEYLSKLRELWLRNNPIE-SIPSYAFNR----------------VPSLRRLDL 138
Query: 245 GNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLT---KLTD 301
G L L+ Y+S+ G L +L+ L+L + + K+I NLT +L +
Sbjct: 139 GELKRLE--YISEAAFEG---------LVNLRYLNLGMCNL-----KDIPNLTALVRLEE 182
Query: 302 LYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSL 361
L L N+L P L L L L H ++ + +L +L L L +N+L SL
Sbjct: 183 LELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLM-SL 241
Query: 362 PSSADVPLPNLEELFL 377
P PL LE + L
Sbjct: 242 PHDLFTPLHRLERVHL 257
>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On
Plant Receptor- Like Kinase Bak1 Activation
pdb|3ULZ|A Chain A, Crystal Structure Of Apo Bak1
Length = 326
Score = 35.4 bits (80), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 12/97 (12%)
Query: 379 EYGREGRVSTNGDIYNFGIMIMETFTAKKPTDEIF---NGEMTLRRWVNDLLSISVME-V 434
EY G+ S D++ +G+M++E T ++ D + ++ L WV LL +E +
Sbjct: 205 EYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEAL 264
Query: 435 VDANLLS-WKDKHFMTKEQCMSFVFNLAMECTVESPI 470
VD +L +KD+ EQ + +A+ CT SP+
Sbjct: 265 VDVDLQGNYKDEEV---EQ----LIQVALLCTQSSPM 294
>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|D Chain D, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|G Chain G, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|H Chain H, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
Length = 349
Score = 35.4 bits (80), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 12/97 (12%)
Query: 379 EYGREGRVSTNGDIYNFGIMIMETFTAKKPTDEIF---NGEMTLRRWVNDLLSISVME-V 434
EY G+ S D++ +G+M++E T ++ D + ++ L WV LL +E +
Sbjct: 213 EYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEAL 272
Query: 435 VDANLLS-WKDKHFMTKEQCMSFVFNLAMECTVESPI 470
VD +L +KD+ EQ + +A+ CT SP+
Sbjct: 273 VDVDLQGNYKDEEV---EQ----LIQVALLCTQSSPM 302
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 35.4 bits (80), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Query: 261 SGELPANIGNNLPSL-QTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGN 319
SG+ A++ +P+ Q L LY N + P LT+LT L LD N+L
Sbjct: 25 SGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDK 84
Query: 320 LRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNN 355
L +L L L+ N+L + NL +L + L NN
Sbjct: 85 LTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 120
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 9/114 (7%)
Query: 269 GNNLPSLQTLSLYVNDFSG----AIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLE 324
G+ PS + S D SG ++P I T++ LYL N++ P L +L
Sbjct: 8 GSACPSQCSCSGTTVDCSGKSLASVPTGIPTTTQV--LYLYDNQITKLEPGVFDRLTQLT 65
Query: 325 WLMLSHNKLVGVVPAPIFN-LSTLISLQLHNNSLSGSLPSSADVPLPNLEELFL 377
L L +N+L V+PA +F+ L+ L L L++N L S+P A L +L ++L
Sbjct: 66 RLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQLK-SIPRGAFDNLKSLTHIWL 117
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 34/80 (42%)
Query: 131 ESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQG 190
+ L+L N P QL L L +N + LT+LT+L+L N+L+
Sbjct: 41 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 100
Query: 191 EIPEELGNLAELEMLWLQNN 210
NL L +WL NN
Sbjct: 101 IPRGAFDNLKSLTHIWLLNN 120
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 236 FTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGN 295
T + P L+ L +L L +NQL+ LPA + + L L LSL N N
Sbjct: 50 ITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDN 108
Query: 296 LTKLTDLYL 304
L LT ++L
Sbjct: 109 LKSLTHIWL 117
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 35.0 bits (79), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Query: 261 SGELPANIGNNLPSL-QTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGN 319
SG+ A++ +P+ Q L LY N + P LT+LT L LD N+L
Sbjct: 17 SGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDK 76
Query: 320 LRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNN 355
L +L L L+ N+L + NL +L + L NN
Sbjct: 77 LTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 34/80 (42%)
Query: 131 ESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQG 190
+ L+L N P QL L L +N + LT+LT+L+L N+L+
Sbjct: 33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 92
Query: 191 EIPEELGNLAELEMLWLQNN 210
NL L +WL NN
Sbjct: 93 IPRGAFDNLKSLTHIWLLNN 112
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 56/110 (50%), Gaps = 9/110 (8%)
Query: 273 PSLQTLSLYVNDFSG----AIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLML 328
PS + S D SG ++P I T++ LYL N++ P L +L L L
Sbjct: 4 PSQCSCSGTTVDCSGKSLASVPTGIPTTTQV--LYLYDNQITKLEPGVFDRLTQLTRLDL 61
Query: 329 SHNKLVGVVPAPIFN-LSTLISLQLHNNSLSGSLPSSADVPLPNLEELFL 377
+N+L V+PA +F+ L+ L L L++N L S+P A L +L ++L
Sbjct: 62 DNNQLT-VLPAGVFDKLTQLTQLSLNDNQLK-SIPRGAFDNLKSLTHIWL 109
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 236 FTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGN 295
T + P L+ L +L L +NQL+ LPA + + L L LSL N N
Sbjct: 42 ITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDN 100
Query: 296 LTKLTDLYL 304
L LT ++L
Sbjct: 101 LKSLTHIWL 109
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 35.0 bits (79), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Query: 261 SGELPANIGNNLPSL-QTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGN 319
SG+ A++ +P+ Q L LY N + P LT+LT L LD N+L
Sbjct: 17 SGKSLASVPTGIPTTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDK 76
Query: 320 LRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNN 355
L +L L L+ N+L + NL +L + L NN
Sbjct: 77 LTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNN 112
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 34/80 (42%)
Query: 131 ESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQG 190
+ L+L N P QL L L +N + LT+LT+L+L N+L+
Sbjct: 33 QVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 92
Query: 191 EIPEELGNLAELEMLWLQNN 210
NL L +WL NN
Sbjct: 93 IPRGAFDNLRSLTHIWLLNN 112
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 56/110 (50%), Gaps = 9/110 (8%)
Query: 273 PSLQTLSLYVNDFSG----AIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLML 328
PS + S D SG ++P I T++ LYL N++ P L +L L L
Sbjct: 4 PSQCSCSGTTVDCSGKSLASVPTGIPTTTQV--LYLYDNRITKLEPGVFDRLTQLTRLDL 61
Query: 329 SHNKLVGVVPAPIFN-LSTLISLQLHNNSLSGSLPSSADVPLPNLEELFL 377
+N+L V+PA +F+ L+ L L L++N L S+P A L +L ++L
Sbjct: 62 DNNQLT-VLPAGVFDKLTQLTQLSLNDNQLK-SIPRGAFDNLRSLTHIWL 109
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 236 FTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGN 295
T + P L+ L +L L +NQL+ LPA + + L L LSL N N
Sbjct: 42 ITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDN 100
Query: 296 LTKLTDLYL 304
L LT ++L
Sbjct: 101 LRSLTHIWL 109
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 35.0 bits (79), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 66/128 (51%), Gaps = 12/128 (9%)
Query: 249 SLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEI-GNLTKLTDLYLDQN 307
++QKLY+ N + LP ++ N+P L L L ND S ++P+ I N KLT L + N
Sbjct: 94 TIQKLYMGFNAIRY-LPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNN 151
Query: 308 KLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADV 367
L+ L+ L LS N+L V +LS + SL H N +S +L S+ +
Sbjct: 152 NLERIEDDTFQATTSLQNLQLSSNRLTHV------DLSLIPSL-FHAN-VSYNLLSTLAI 203
Query: 368 PLPNLEEL 375
P+ +EEL
Sbjct: 204 PIA-VEEL 210
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 61/153 (39%), Gaps = 14/153 (9%)
Query: 79 SSLQALDLSFNWFYGSIPSSIFN-------MSSLLSIYFNNNTLFGEL----PPNFCN-- 125
+S+ LDLS N F S+ F+ S +LS +N + FG P NF
Sbjct: 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKG 271
Query: 126 -QMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLR 184
+ S +++ L + + S S L +L+L+ N + LT L L L
Sbjct: 272 LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALD 331
Query: 185 QNKLQGEIPEELGNLAELEMLWLQNNSLTGTIP 217
N+L+ L L+ +WL N + P
Sbjct: 332 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 364
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 66/128 (51%), Gaps = 12/128 (9%)
Query: 249 SLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEI-GNLTKLTDLYLDQN 307
++QKLY+ N + LP ++ N+P L L L ND S ++P+ I N KLT L + N
Sbjct: 100 TIQKLYMGFNAIRY-LPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNN 157
Query: 308 KLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADV 367
L+ L+ L LS N+L V +LS + SL H N +S +L S+ +
Sbjct: 158 NLERIEDDTFQATTSLQNLQLSSNRLTHV------DLSLIPSL-FHAN-VSYNLLSTLAI 209
Query: 368 PLPNLEEL 375
P+ +EEL
Sbjct: 210 PIA-VEEL 216
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Query: 268 IGNNLPSLQTLSLYVNDFS-GAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWL 326
I N L SL+ L + N F +P L LT L L Q +L+ P +L L+ L
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499
Query: 327 MLSHNKLVGVVPAPIFN-LSTLISLQLHNNSLSGSLP 362
++ N+L V P IF+ L++L + LH N S P
Sbjct: 500 NMASNQLKSV-PDGIFDRLTSLQKIWLHTNPWDCSCP 535
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 241 PSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPK 291
P++ +LSSLQ L ++ NQL +P I + L SLQ + L+ N + + P+
Sbjct: 487 PTAFNSLSSLQVLNMASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR 536
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 1/94 (1%)
Query: 125 NQMSNLESLFLKYNMFHGK-IPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNL 183
N +S+LE L + N F +P + + L L LS P +L+ L LN+
Sbjct: 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501
Query: 184 RQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIP 217
N+L+ L L+ +WL N + P
Sbjct: 502 ASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 70/172 (40%), Gaps = 20/172 (11%)
Query: 51 DVRSHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYF 110
D+ S L+ +GL+ G +SL+ LDLSFN ++ S+ + L + F
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDF 403
Query: 111 NNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPST---------LSSCKQLRELSLSS 161
++ L QMS N+ + I T + L L ++
Sbjct: 404 QHSNL---------KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 454
Query: 162 NYFSGT-IPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSL 212
N F +P L LT L+L Q +L+ P +L+ L++L + +N L
Sbjct: 455 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 73/174 (41%), Gaps = 23/174 (13%)
Query: 154 LRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLT 213
L L+LS+N + P I L +T+L L NKL P L NL L L+L N +
Sbjct: 68 LTSLNLSNNQITDISP--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK 123
Query: 214 GTIPXXXXXXXXXXXXXXX-XXXFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNL 272
G++ +L L+ LYL +N+++ + + L
Sbjct: 124 DLSSLKDLKKLKSLSLEHNGISDINGLV-----HLPQLESLYLGNNKITD---ITVLSRL 175
Query: 273 PSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWL 326
L TLSL N S +P + LTKL +LYL +N I +LR L L
Sbjct: 176 TKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN--------HISDLRALAGL 219
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 272 LPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHN 331
LP+L +L+L N + P I L +T L+L+ NKL P + NL+ L WL L N
Sbjct: 65 LPNLTSLNLSNNQITDISP--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN 120
Query: 332 KL 333
K+
Sbjct: 121 KV 122
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 86/207 (41%), Gaps = 8/207 (3%)
Query: 152 KQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNS 211
+ L L LS N+ L L L L N+L L++L+ LWL+NN
Sbjct: 88 RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNP 147
Query: 212 LTGTIPXXX--XXXXXXXXXXXXXXXFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIG 269
+ +IP + I + LS+L+ L L+ L E+P N+
Sbjct: 148 IE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NL- 203
Query: 270 NNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLS 329
L L L L N S P L L L++ Q+++Q + NL+ L + L+
Sbjct: 204 TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLA 263
Query: 330 HNKLVGVVPAPIFN-LSTLISLQLHNN 355
HN L ++P +F L L + LH+N
Sbjct: 264 HNNLT-LLPHDLFTPLHHLERIHLHHN 289
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 51/125 (40%), Gaps = 4/125 (3%)
Query: 263 ELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRK 322
E+P I N + L+L+ N +L L L L +N ++ L
Sbjct: 57 EVPDGISTNT---RLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLAN 113
Query: 323 LEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFLWEYGR 382
L L L N+L + LS L L L NN + S+PS A +P+L L L E R
Sbjct: 114 LNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKR 172
Query: 383 EGRVS 387
+S
Sbjct: 173 LSYIS 177
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 271 NLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSH 330
NL +L TL L N S P L KL LYL +N+L+ ++P ++ + L+ L +
Sbjct: 74 NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHE 130
Query: 331 NKLVGVVPAPIFNLSTLISLQLHNNSLSGS 360
N++ V + L+ +I ++L N L S
Sbjct: 131 NEITKVRKSVFNGLNQMIVVELGTNPLKSS 160
Score = 31.6 bits (70), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 93/237 (39%), Gaps = 62/237 (26%)
Query: 168 IPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPXXXXXXXXXX 227
+PK++ T L L+L+ NK+ + NL L L L NN ++
Sbjct: 46 VPKDLPPDTAL--LDLQNNKITEIKDGDFKNLKNLHTLILINNKISK------------- 90
Query: 228 XXXXXXXXFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSG 287
I P + L L++LYLS NQL ELP + +LQ L ++ N+ +
Sbjct: 91 -----------ISPGAFAPLVKLERLYLSKNQLK-ELPEKMPK---TLQELRVHENEITK 135
Query: 288 AIPKEIGNLTKLTDLYLDQNKLQ--GKIPHEIGNLRKLEW-------------------- 325
L ++ + L N L+ G ++KL +
Sbjct: 136 VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLT 195
Query: 326 -LMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLS----GSLPSSADVPLPNLEELFL 377
L L NK+ V A + L+ L L L NS+S GSL ++ P+L EL L
Sbjct: 196 ELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT-----PHLRELHL 247
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 271 NLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSH 330
NL +L TL L N S P L KL LYL +N+L+ ++P ++ + L+ L +
Sbjct: 74 NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHE 130
Query: 331 NKLVGVVPAPIFNLSTLISLQLHNNSLSGS 360
N++ V + L+ +I ++L N L S
Sbjct: 131 NEITKVRKSVFNGLNQMIVVELGTNPLKSS 160
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 93/237 (39%), Gaps = 62/237 (26%)
Query: 168 IPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPXXXXXXXXXX 227
+PK++ T L L+L+ NK+ + NL L L L NN ++
Sbjct: 46 VPKDLPPDTAL--LDLQNNKITEIKDGDFKNLKNLHTLILINNKISK------------- 90
Query: 228 XXXXXXXXFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSG 287
I P + L L++LYLS NQL ELP + +LQ L ++ N+ +
Sbjct: 91 -----------ISPGAFAPLVKLERLYLSKNQLK-ELPEKMPK---TLQELRVHENEITK 135
Query: 288 AIPKEIGNLTKLTDLYLDQNKLQ--GKIPHEIGNLRKLEW-------------------- 325
L ++ + L N L+ G ++KL +
Sbjct: 136 VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLT 195
Query: 326 -LMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLS----GSLPSSADVPLPNLEELFL 377
L L NK+ V A + L+ L L L NS+S GSL ++ P+L EL L
Sbjct: 196 ELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT-----PHLRELHL 247
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 262 GELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLR 321
+PA I + Q L LY+N + P +LT+LT L L N+L L
Sbjct: 32 ASVPAGIPT---TTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLT 88
Query: 322 KLEWLMLSHNKLVGVVPAPIF-NLSTLISLQLHNN 355
KL L L N+L +P +F NL +L + L NN
Sbjct: 89 KLTHLALHINQLKS-IPMGVFDNLKSLTHIYLFNN 122
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 7/94 (7%)
Query: 287 GAIPKEIGNLTKLTDLYLDQ-NKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFN-L 344
++P I T++ LY++Q KL+ P +L +L +L L+ N+L + P +F+ L
Sbjct: 32 ASVPAGIPTTTQVLHLYINQITKLE---PGVFDSLTQLTYLNLAVNQLTAL-PVGVFDKL 87
Query: 345 STLISLQLHNNSLSGSLPSSADVPLPNLEELFLW 378
+ L L LH N L S+P L +L ++L+
Sbjct: 88 TKLTHLALHINQLK-SIPMGVFDNLKSLTHIYLF 120
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 45/118 (38%), Gaps = 27/118 (22%)
Query: 93 GSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCK 152
S+P+ I + +L +Y N Q++ LE P S
Sbjct: 32 ASVPAGIPTTTQVLHLYIN--------------QITKLE-------------PGVFDSLT 64
Query: 153 QLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNN 210
QL L+L+ N + LTKLT L L N+L+ NL L ++L NN
Sbjct: 65 QLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKSIPMGVFDNLKSLTHIYLFNN 122
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 240 IPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKL 299
+P+ I + + LY+ NQ++ +L + ++L L L+L VN + LTKL
Sbjct: 34 VPAGIPTTTQVLHLYI--NQIT-KLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKL 90
Query: 300 TDLYLDQNKLQGKIPHEI-GNLRKLEWLMLSHN 331
T L L N+L+ IP + NL+ L + L +N
Sbjct: 91 THLALHINQLK-SIPMGVFDNLKSLTHIYLFNN 122
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 86/217 (39%), Gaps = 34/217 (15%)
Query: 167 TIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPXXXXXXXXX 226
+PKEI T L L+L+ N + ++ L L L L NN ++
Sbjct: 47 AVPKEISPDTTL--LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKL 104
Query: 227 XXXXXXXXXFTGIIPSSIGNL-SSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVND- 284
I P NL SSL +L + DN++ ++P + + L ++ + + N
Sbjct: 105 QKLYISKNHLVEIPP----NLPSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPL 159
Query: 285 ---------FSG--------------AIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLR 321
F G IPK++ L +L+LD NK+Q ++
Sbjct: 160 ENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPE--TLNELHLDHNKIQAIELEDLLRYS 217
Query: 322 KLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLS 358
KL L L HN++ + + L TL L L NN LS
Sbjct: 218 KLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS 254
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 83/353 (23%), Positives = 140/353 (39%), Gaps = 54/353 (15%)
Query: 52 VRSHRVAALNISGLNLTGTIPSELANL--SSLQALDLSFNWFYGSIPSSIFNMSSLLSIY 109
+ +H + N+ + A L SS++ LDLS + + S+ S +F L +
Sbjct: 237 ILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF-SLNSRVFETLKDLKVL 295
Query: 110 FNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIP 169
++ + NL+ L L YN+ S ++ + L N+ +
Sbjct: 296 NLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQD 355
Query: 170 KEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPXXXXXXXXXXXX 229
+ L KL L+LR N L + + + ++L N L T+P
Sbjct: 356 QTFKFLEKLQTLDLRDNAL-----TTIHFIPSIPDIFLSGNKLV-TLPKI---------- 399
Query: 230 XXXXXXFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGA- 288
NL++ ++LS+N+L +P LQ L L N FS
Sbjct: 400 ----------------NLTA-NLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCS 442
Query: 289 ---IPKEIGNLTKLTDLYLDQNKLQGKIPHEIG-----NLRKLEWLMLSHNKLVGVVPAP 340
P E +L + L+L +N LQ E+ L L+ L L+HN L + P
Sbjct: 443 GDQTPSENPSLEQ---LFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGV 499
Query: 341 IFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFLWEYGREGRVSTNGDIY 393
+L+ L L L++N L ++ S D+P NLE L + R ++ N D++
Sbjct: 500 FSHLTALRGLSLNSNRL--TVLSHNDLP-ANLEIL---DISRNQLLAPNPDVF 546
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 89/225 (39%), Gaps = 64/225 (28%)
Query: 95 IPSSIFNMSSLLSIYFNN-NTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQ 153
+P S+ + ++LL + NN + L E P +++NL SL L +N +
Sbjct: 33 VPQSLPSYTALLDLSHNNLSRLRAEWTPT---RLTNLHSLLLSHNHLNFISSEAFVPVPN 89
Query: 154 LRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLT 213
LR L LSSN+ T+ + + +L LE+L L NN +
Sbjct: 90 LRYLDLSSNHLH-TLDEFL-----------------------FSDLQALEVLLLYNNHIV 125
Query: 214 GTIPXXXXXXXXXXXXXXXXXXFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANI---GN 270
+ ++ +++ LQKLYLS NQ+S P + GN
Sbjct: 126 V------------------------VDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGN 160
Query: 271 NLPSLQTLSLYVNDFSGAIPKEIGNLTKL-----TDLYLDQNKLQ 310
LP L L L N +P + +L KL LYL N L+
Sbjct: 161 KLPKLMLLDLSSNKLK-KLP--LTDLQKLPAWVKNGLYLHNNPLE 202
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 58/117 (49%), Gaps = 14/117 (11%)
Query: 250 LQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKL 309
L+ L LS N L L + ++L +L+ L LY N ++ +L LYL QN++
Sbjct: 90 LRYLDLSSNHLHT-LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI 148
Query: 310 QGKIPHEI---GN-LRKLEWLMLSHNKLVGVVPAPIFNLSTLIS-----LQLHNNSL 357
+ P E+ GN L KL L LS NKL + P+ +L L + L LHNN L
Sbjct: 149 -SRFPVELIKDGNKLPKLMLLDLSSNKLKKL---PLTDLQKLPAWVKNGLYLHNNPL 201
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 246 NLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLD 305
+L L+ LYL +N+++ + + L L TLSL N S +P + LTKL +LYL
Sbjct: 129 HLPQLESLYLGNNKITD---ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLS 183
Query: 306 QNKL 309
+N +
Sbjct: 184 KNHI 187
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 64/169 (37%), Gaps = 19/169 (11%)
Query: 27 DPTNFLAKNWNTSSSFCYWTGV-TCDVRSHRVAALNISGLNLTGTIPSELANLSSLQALD 85
DP NF K S GV TCD+ ++ AL + S ++ + L+ L
Sbjct: 263 DPDNFTFKGLEAS-------GVKTCDLSKSKIFAL----------LKSVFSHFTDLEQLT 305
Query: 86 LSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIP 145
L+ N ++ + ++ LL + + N L G + + LE L L YN
Sbjct: 306 LAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRALGD 364
Query: 146 STLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPE 194
+ L+EL+L +N LT L ++ L N P
Sbjct: 365 QSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 1/114 (0%)
Query: 264 LPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKL 323
L ++ ++ L+ L+L N+ + LT L L L QN L NL KL
Sbjct: 290 LLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKL 349
Query: 324 EWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFL 377
E L LS+N + + L L L L N L S+P L +L++++L
Sbjct: 350 EVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWL 402
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 5/127 (3%)
Query: 238 GIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEI-GNL 296
++ S + + L++L L+ N+++ ++ N L L L+L N F G+I + NL
Sbjct: 289 ALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQN-FLGSIDSRMFENL 346
Query: 297 TKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFN-LSTLISLQLHNN 355
KL L L N ++ L L+ L L N+L V P IF+ L++L + LH N
Sbjct: 347 DKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSV-PDGIFDRLTSLQKIWLHTN 405
Query: 356 SLSGSLP 362
S P
Sbjct: 406 PWDCSCP 412
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 63/127 (49%), Gaps = 8/127 (6%)
Query: 239 IIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEI-GNLT 297
I + L L++ + +L+ +PAN+ ++ +L L L N +P + +L
Sbjct: 114 ITRQHLDRLHGLKRFRFTTRRLT-HIPANLLTDMRNLSHLELRAN--IEEMPSHLFDDLE 170
Query: 298 KLTDLYLDQNKLQGKIPHEI-GNLRKLEWLMLSHNKLVGVVPAPIFN-LSTLISLQLHNN 355
L + NKL+ ++P I G + KL+ L L+ N+L V P IF+ L++L + LH N
Sbjct: 171 NLESIEFGSNKLR-QMPRGIFGKMPKLKQLNLASNQLKSV-PDGIFDRLTSLQKIWLHTN 228
Query: 356 SLSGSLP 362
S P
Sbjct: 229 PWDCSCP 235
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 13/81 (16%)
Query: 246 NLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLD 305
+L L+ LYL +N+++ + + L L TLSL N S +P + LTKL +LYL
Sbjct: 130 HLPQLESLYLGNNKITD---ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLS 184
Query: 306 QNKLQGKIPHEIGNLRKLEWL 326
+N I +LR L L
Sbjct: 185 KN--------HISDLRALAGL 197
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 13/81 (16%)
Query: 246 NLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLD 305
+L L+ LYL +N+++ + + L L TLSL N S +P + LTKL +LYL
Sbjct: 132 HLPQLESLYLGNNKITD---ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLS 186
Query: 306 QNKLQGKIPHEIGNLRKLEWL 326
+N I +LR L L
Sbjct: 187 KN--------HISDLRALAGL 199
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 13/81 (16%)
Query: 246 NLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLD 305
+L L+ LYL +N+++ + + L L TLSL N S +P + LTKL +LYL
Sbjct: 150 HLPQLESLYLGNNKITD---ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLS 204
Query: 306 QNKLQGKIPHEIGNLRKLEWL 326
+N I +LR L L
Sbjct: 205 KN--------HISDLRALAGL 217
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 246 NLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLD 305
+L L+ LYL +N+++ + + L L TLSL N S +P + LTKL +LYL
Sbjct: 132 HLPQLESLYLGNNKITD---ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLS 186
Query: 306 QNKL 309
+N +
Sbjct: 187 KNHI 190
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 13/81 (16%)
Query: 246 NLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLD 305
+L L+ LYL +N+++ + + L L TLSL N S +P + LTKL +LYL
Sbjct: 150 HLPQLESLYLGNNKITD---ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLS 204
Query: 306 QNKLQGKIPHEIGNLRKLEWL 326
+N I +LR L L
Sbjct: 205 KN--------HISDLRALAGL 217
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 13/81 (16%)
Query: 246 NLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLD 305
+L L+ LYL +N+++ + + L L TLSL N S +P + LTKL +LYL
Sbjct: 150 HLPQLESLYLGNNKITD---ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLS 204
Query: 306 QNKLQGKIPHEIGNLRKLEWL 326
+N I +LR L L
Sbjct: 205 KN--------HISDLRALAGL 217
>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|B Chain B, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|C Chain C, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|D Chain D, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
Length = 327
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 379 EYGREGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMT-LRRWVNDLLSISVME-VVD 436
EY +GR++ D+Y+FG+++ E A+ + EM L W + + +E +VD
Sbjct: 211 EYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVD 270
Query: 437 ANL 439
NL
Sbjct: 271 PNL 273
>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By
Bacterial Effector Protein Avrpto
Length = 321
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 379 EYGREGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMT-LRRWVNDLLSISVME-VVD 436
EY +GR++ D+Y+FG+++ E A+ + EM L W + + +E +VD
Sbjct: 211 EYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVD 270
Query: 437 ANL 439
NL
Sbjct: 271 PNL 273
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 55/127 (43%), Gaps = 2/127 (1%)
Query: 240 IPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKL 299
IP I ++ +L L++N+ + I LP L+ ++ N + + +
Sbjct: 26 IPEHIPQYTA--ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV 83
Query: 300 TDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSG 359
++ L N+L+ L L+ LML N++ V LS++ L L++N ++
Sbjct: 84 NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITT 143
Query: 360 SLPSSAD 366
P + D
Sbjct: 144 VAPGAFD 150
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 13/81 (16%)
Query: 246 NLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLD 305
+L L+ LYL +N+++ + + L L TLSL N S +P + LTKL +LYL
Sbjct: 127 HLPQLESLYLGNNKITD---ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLS 181
Query: 306 QNKLQGKIPHEIGNLRKLEWL 326
+N I +LR L L
Sbjct: 182 KN--------HISDLRALAGL 194
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 6/101 (5%)
Query: 240 IPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVN----DFSGAIPKEIGN 295
+PS I ++SL+KL L+ N N + PSL+ L + N D +++ N
Sbjct: 292 LPSGIEGMNSLKKLVLNANSFDQLCQINAAS-FPSLRDLYIKGNMRKLDLGTRCLEKLEN 350
Query: 296 LTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGV 336
L KL DL + ++ NLR L++L LS+N+ +G+
Sbjct: 351 LQKL-DLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGL 390
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 246 NLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLD 305
+L L+ LYL +N+++ + + L L TLSL N S +P + LTKL +LYL
Sbjct: 127 HLPQLESLYLGNNKITD---ITVLSRLTKLDTLSLEDNQISDIVP--LACLTKLQNLYLS 181
Query: 306 QNKL 309
+N +
Sbjct: 182 KNHI 185
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 236 FTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGN 295
T + P +L +LQ+LY + N+L+ +P + + L L L L N N
Sbjct: 45 ITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDN 103
Query: 296 LTKLTDLYLDQN 307
L LT +YL N
Sbjct: 104 LKSLTHIYLYNN 115
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 39/100 (39%), Gaps = 3/100 (3%)
Query: 93 GSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCK 152
S+P+ I + ++ NNN + +L P + + NL+ L+ N
Sbjct: 25 ASVPAGI--PTDKQRLWLNNNQI-TKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLT 81
Query: 153 QLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEI 192
QL +L L+ N+ NL LT + L N E
Sbjct: 82 QLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 42/109 (38%), Gaps = 3/109 (2%)
Query: 247 LSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQ 306
S Q L N +PA I + Q L L N + P +L L LY +
Sbjct: 10 CSCDQTLVNCQNIRLASVPAGIPTDK---QRLWLNNNQITKLEPGVFDHLVNLQQLYFNS 66
Query: 307 NKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNN 355
NKL L +L L L+ N L + NL +L + L+NN
Sbjct: 67 NKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 39/98 (39%), Gaps = 3/98 (3%)
Query: 92 YGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSC 151
+ SIPS + L + FN T G C +NL+ L LK + + S
Sbjct: 43 FTSIPSGLTAAMKSLDLSFNKITYIGHGDLRAC---ANLQVLILKSSRINTIEGDAFYSL 99
Query: 152 KQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQ 189
L L LS N+ S G L+ L LNL N Q
Sbjct: 100 GSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ 137
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 13/81 (16%)
Query: 246 NLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLD 305
+L L+ LYL +N+++ + + L L TLSL N +P + LTKL +LYL
Sbjct: 130 HLPQLESLYLGNNKITD---ITVLSRLTKLDTLSLEDNQIRRIVP--LARLTKLQNLYLS 184
Query: 306 QNKLQGKIPHEIGNLRKLEWL 326
+N I +LR L L
Sbjct: 185 KN--------HISDLRALRGL 197
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 47/119 (39%), Gaps = 4/119 (3%)
Query: 92 YGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSC 151
+ SIPS + L + FN T G C +NL+ L LK + + S
Sbjct: 17 FTSIPSGLTAAMKSLDLSFNKITYIGHGDLRAC---ANLQVLILKSSRINTIEGDAFYSL 73
Query: 152 KQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQG-EIPEELGNLAELEMLWLQN 209
L L LS N+ S G L+ L LNL N Q + NL L+ L + N
Sbjct: 74 GSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGN 132
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 48/120 (40%), Gaps = 3/120 (2%)
Query: 236 FTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDF--SGAIPKEI 293
F + S N SL LY+ N L L +LQTL L ND S ++
Sbjct: 310 FDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQL 369
Query: 294 GNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKL-VGVVPAPIFNLSTLISLQL 352
NL+ L L L N+ G +LE L L+ +L + +P NL L L L
Sbjct: 370 KNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNL 429
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 62/152 (40%), Gaps = 23/152 (15%)
Query: 56 RVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTL 115
++ L+++ +L G +PS + L+ L+ L LS N F S N SL +Y N
Sbjct: 276 QLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVK 334
Query: 116 FGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNL 175
L ++ NL++L L +N S C L ++ NL
Sbjct: 335 KLHLGVGCLEKLGNLQTLDLSHNDIEA------SDCCSL----------------QLKNL 372
Query: 176 TKLTRLNLRQNKLQGEIPEELGNLAELEMLWL 207
+ L LNL N+ G + +LE+L L
Sbjct: 373 SHLQTLNLSHNEPLGLQSQAFKECPQLELLDL 404
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 8/102 (7%)
Query: 240 IPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKL 299
+PS + L+ L+KL LS N +L N PSL LY+ + +G L KL
Sbjct: 290 LPSGMKGLNLLKKLVLSVNHFD-QLCQISAANFPSLT--HLYIRGNVKKLHLGVGCLEKL 346
Query: 300 TDLY---LDQNKLQGK--IPHEIGNLRKLEWLMLSHNKLVGV 336
+L L N ++ ++ NL L+ L LSHN+ +G+
Sbjct: 347 GNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGL 388
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 271 NLPSLQTLSLYVNDFSGAIPKEI-GNLTK-LTDLYLDQNKLQGKIPHEIGNLRKLEWLML 328
+ P+ T S + D G EI NL + +T++ L+QN ++ P +KL + L
Sbjct: 4 HCPAACTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDL 63
Query: 329 SHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSS 364
S+N++ + P L +L SL L+ N ++ LP S
Sbjct: 64 SNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKS 98
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 106/261 (40%), Gaps = 57/261 (21%)
Query: 145 PSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEM 204
PS S Q ++ + S +P+ I + T+ LNL +N +Q + +L LE+
Sbjct: 47 PSVCSCSNQFSKVVCTRRGLS-EVPQGIPSNTRY--LNLMENNIQMIQADTFRHLHHLEV 103
Query: 205 LWLQNNSLTGTIPXXXXXXXXXXXXXXXXXXFTGIIPS-SIGNLSSLQKLYLSDNQLSGE 263
L L NS+ I + +IPS + LS L++L+L +N +
Sbjct: 104 LQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-S 161
Query: 264 LPANIGNNLPSLQTLSL-------YVND--FSGAIP-----------KEIGNLTKLT--- 300
+P+ N +PSL L L Y+++ F G K++ NLT L
Sbjct: 162 IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLE 221
Query: 301 DLYLDQNKLQGKIP---HEIGNLRKLEWLM----------------------LSHNKLVG 335
+L + N P H + +L+KL W+M L+HN L
Sbjct: 222 ELEMSGNHFPEIRPGSFHGLSSLKKL-WVMNSQVSLIERNAFDGLASLVELNLAHNNLSS 280
Query: 336 VVPAPIFN-LSTLISLQLHNN 355
+ P +F L L+ L LH+N
Sbjct: 281 L-PHDLFTPLRYLVELHLHHN 300
>pdb|3BKB|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (V- Fes)
pdb|3CBL|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (v- Fes) In Complex With Staurosporine And A
Consensus Peptide
pdb|4E93|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (V- Fes)in Complex With Tae684
Length = 377
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 41/106 (38%), Gaps = 21/106 (19%)
Query: 384 GRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSW 442
GR S+ D+++FGI++ ETF+ P + N + R +V
Sbjct: 290 GRYSSESDVWSFGILLWETFSLGASPYPNLSNQQT--REFVE------------------ 329
Query: 443 KDKHFMTKEQCMSFVFNLAMECTVESPIRESTQRKLLQDSQKLETR 488
K E C VF L +C P + + + Q+ Q + R
Sbjct: 330 KGGRLPCPELCPDAVFRLMEQCWAYEPGQRPSFSTIYQELQSIRKR 375
>pdb|3CD3|A Chain A, Crystal Structure Of Phosphorylated Human Feline Sarcoma
Viral Oncogene Homologue (V-Fes) In Complex With
Staurosporine And A Consensus Peptide
Length = 377
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 41/106 (38%), Gaps = 21/106 (19%)
Query: 384 GRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSW 442
GR S+ D+++FGI++ ETF+ P + N + R +V
Sbjct: 290 GRYSSESDVWSFGILLWETFSLGASPYPNLSNQQT--REFVE------------------ 329
Query: 443 KDKHFMTKEQCMSFVFNLAMECTVESPIRESTQRKLLQDSQKLETR 488
K E C VF L +C P + + + Q+ Q + R
Sbjct: 330 KGGRLPCPELCPDAVFRLMEQCWAYEPGQRPSFSTIYQELQSIRKR 375
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 271 NLPSLQTLSLYVNDFSGAIPKEI-GNLTK-LTDLYLDQNKLQGKIPHEIGNLRKLEWLML 328
+ P+ T S + D G EI NL + +T++ L+QN ++ P +KL + L
Sbjct: 4 HCPAACTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDL 63
Query: 329 SHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSS 364
S+N++ + P L +L SL L+ N ++ LP S
Sbjct: 64 SNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKS 98
>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With
Its Activating Protein Tab1
pdb|2YIY|A Chain A, Crystal Structure Of Compound 8 Bound To Tak1-Tab
Length = 307
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 387 STNGDIYNFGIMIMETFTAKKPTDEI 412
S D++++GI++ E T +KP DEI
Sbjct: 181 SEKCDVFSWGIILWEVITRRKPFDEI 206
>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol
Length = 315
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 387 STNGDIYNFGIMIMETFTAKKPTDEI 412
S D++++GI++ E T +KP DEI
Sbjct: 182 SEKCDVFSWGIILWEVITRRKPFDEI 207
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 103/254 (40%), Gaps = 37/254 (14%)
Query: 143 KIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIP----EELGN 198
++PS L L++L LS+N F N LT L+++ N + E+ E L N
Sbjct: 292 ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN 351
Query: 199 LAELEM------------LWLQNNS------LTGTIPXXXXXXXXXX--XXXXXXXXFTG 238
L EL++ L L+N S L+ P FT
Sbjct: 352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR 411
Query: 239 I----IPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDF-SGAIPK-- 291
+ S NL L+ L LS + L + + LP+LQ L+L N F G I K
Sbjct: 412 LKVKDAQSPFQNLHLLKVLNLSHSLLDIS-SEQLFDGLPALQHLNLQGNHFPKGNIQKTN 470
Query: 292 EIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTL--IS 349
+ L +L L L L H +L+ + + LSHN+L + I LS L I
Sbjct: 471 SLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS---SSIEALSHLKGIY 527
Query: 350 LQLHNNSLSGSLPS 363
L L +N +S LPS
Sbjct: 528 LNLASNHISIILPS 541
>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
(Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.80 A Resolution
Length = 876
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 293 IGNLTKLTDLYLDQNKLQGKIPHEIGNL-RKLEWLMLSHNKLVGVVPAPIFNLSTL 347
G KLTDL LD N+++ +IP + ++E L SHNKL +P IFN ++
Sbjct: 591 FGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKL-KYIPN-IFNAKSV 643
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 23/141 (16%)
Query: 152 KQLRELSLSSNYF-SGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNN 210
K L+EL+++ N S +P+ NLT L L+L NK+Q +L L ++ +L L +
Sbjct: 126 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 185
Query: 211 SLTGTIPXXXXXXXXXXXXXXXXXXFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGN 270
+ I P + + L++L L NQL +P I +
Sbjct: 186 LSLNPM--------------------NFIQPGAFKEI-RLKELALDTNQLKS-VPDGIFD 223
Query: 271 NLPSLQTLSLYVNDFSGAIPK 291
L SLQ + L+ N + + P+
Sbjct: 224 RLTSLQKIWLHTNPWDCSCPR 244
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 23/141 (16%)
Query: 152 KQLRELSLSSNYF-SGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNN 210
K L+EL+++ N S +P+ NLT L L+L NK+Q +L L ++ +L L +
Sbjct: 125 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 184
Query: 211 SLTGTIPXXXXXXXXXXXXXXXXXXFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGN 270
+ I P + + L++L L NQL +P I +
Sbjct: 185 LSLNPM--------------------NFIQPGAFKEI-RLKELALDTNQLKS-VPDGIFD 222
Query: 271 NLPSLQTLSLYVNDFSGAIPK 291
L SLQ + L+ N + + P+
Sbjct: 223 RLTSLQKIWLHTNPWDCSCPR 243
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 70/172 (40%), Gaps = 20/172 (11%)
Query: 51 DVRSHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYF 110
D+ S L+ +GL+ G +SL+ LDLSFN ++ S+ + L + F
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDF 403
Query: 111 NNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPST---------LSSCKQLRELSLSS 161
++ L QMS N+ + I T + L L ++
Sbjct: 404 QHSNL---------KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 454
Query: 162 NYFSGT-IPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSL 212
N F +P L LT L+L Q +L+ P +L+ L++L + +N+
Sbjct: 455 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 79/325 (24%), Positives = 116/325 (35%), Gaps = 47/325 (14%)
Query: 79 SSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSN--LESLFLK 136
SSL+ LDLS N P + L ++ NN L L C ++SN +++L L
Sbjct: 171 SSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLA 230
Query: 137 YNMFHGKIPSTLSSCK--QLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPE 194
N ST S K L +L LS N L L L+L N +Q P
Sbjct: 231 NNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPR 290
Query: 195 ELGNLAELEMLWLQNNSLTGTI-----PXXXXXXXXXXXXXXXXXXFTGIIPSSIGN--- 246
L+ L L L+ ++ P IPS+ N
Sbjct: 291 SFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFT 350
Query: 247 ------LSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLT 300
SL K + S L+ E ++ ++ L TL+L N S L +L
Sbjct: 351 GLVSLKYLSLSKTFTSLQTLTNETFVSLAHS--PLLTLNLTKNHISKIANGTFSWLGQLR 408
Query: 301 DLYLDQNKLQGKIP-HEIGNLRKLEWLMLSHNKL-------------------------- 333
L L N+++ K+ E LR + + LS+NK
Sbjct: 409 ILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLRRVALKN 468
Query: 334 VGVVPAPIFNLSTLISLQLHNNSLS 358
V + P+P L L L L NN+++
Sbjct: 469 VDISPSPFRPLRNLTILDLSNNNIA 493
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 23/141 (16%)
Query: 152 KQLRELSLSSNYF-SGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNN 210
K L+EL+++ N S +P+ NLT L L+L NK+Q +L L ++ +L L +
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183
Query: 211 SLTGTIPXXXXXXXXXXXXXXXXXXFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGN 270
+ I P + + L++L L NQL +P I +
Sbjct: 184 LSLNPM--------------------NFIQPGAFKEI-RLKELALDTNQLKS-VPDGIFD 221
Query: 271 NLPSLQTLSLYVNDFSGAIPK 291
L SLQ + L+ N + + P+
Sbjct: 222 RLTSLQKIWLHTNPWDCSCPR 242
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 23/141 (16%)
Query: 152 KQLRELSLSSNYF-SGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNN 210
K L+EL+++ N S +P+ NLT L L+L NK+Q +L L ++ +L L +
Sbjct: 125 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 184
Query: 211 SLTGTIPXXXXXXXXXXXXXXXXXXFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGN 270
+ I P + + L++L L NQL +P I +
Sbjct: 185 LSLNPM--------------------NFIQPGAFKEI-RLKELALDTNQLKS-VPDGIFD 222
Query: 271 NLPSLQTLSLYVNDFSGAIPK 291
L SLQ + L+ N + + P+
Sbjct: 223 RLTSLQKIWLHTNPWDCSCPR 243
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 23/141 (16%)
Query: 152 KQLRELSLSSNYF-SGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNN 210
K L+EL+++ N S +P+ NLT L L+L NK+Q +L L ++ +L L +
Sbjct: 126 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 185
Query: 211 SLTGTIPXXXXXXXXXXXXXXXXXXFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGN 270
+ I P + + L++L L NQL +P I +
Sbjct: 186 LSLNPM--------------------NFIQPGAFKEI-RLKELALDTNQLKS-VPDGIFD 223
Query: 271 NLPSLQTLSLYVNDFSGAIPK 291
L SLQ + L+ N + + P+
Sbjct: 224 RLTSLQKIWLHTNPWDCSCPR 244
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 67/162 (41%), Gaps = 20/162 (12%)
Query: 59 ALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGE 118
+L+ +GL+ G +SL+ LDLSFN ++ S+ + L + F ++ L
Sbjct: 58 SLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNL--- 113
Query: 119 LPPNFCNQMSNLESLFLKYNMFHGKIPST---------LSSCKQLRELSLSSNYFSGT-I 168
QMS N+ + I T + L L ++ N F +
Sbjct: 114 ------KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 167
Query: 169 PKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNN 210
P L LT L+L Q +L+ P +L+ L++L + +N
Sbjct: 168 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 209
>pdb|2W48|A Chain A, Crystal Structure Of The Full-Length Sorbitol Operon
Regulator Sorc From Klebsiella Pneumoniae
pdb|2W48|B Chain B, Crystal Structure Of The Full-Length Sorbitol Operon
Regulator Sorc From Klebsiella Pneumoniae
pdb|2W48|C Chain C, Crystal Structure Of The Full-Length Sorbitol Operon
Regulator Sorc From Klebsiella Pneumoniae
pdb|2W48|D Chain D, Crystal Structure Of The Full-Length Sorbitol Operon
Regulator Sorc From Klebsiella Pneumoniae
Length = 315
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 12/109 (11%)
Query: 296 LTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPI---FNLSTLISLQL 352
+ K+ LY +Q+ Q +I E+G R +L + G+V I +N + + QL
Sbjct: 10 IVKIAQLYYEQDMTQAQIARELGIYRTTISRLLKRGREQGIVTIAINYDYNENLWLEQQL 69
Query: 353 HNN-SLSGSLPSSADVPLPNLEELFLWEYGREG-----RVSTNGDIYNF 395
L ++ +S+D LEE L G+ G R+ GDI F
Sbjct: 70 KQKFGLKEAVVASSD---GLLEEEQLSAMGQHGALLVDRLLEPGDIIGF 115
>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|B Chain B, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|C Chain C, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|D Chain D, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIC|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OID|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
Length = 301
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 384 GRVSTNGDIYNFGIMIMETFTAKKPTDE 411
G ++ DIY+FG++++E T DE
Sbjct: 203 GEITPKSDIYSFGVVLLEIITGLPAVDE 230
>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4
pdb|2NRY|B Chain B, Crystal Structure Of Irak-4
pdb|2NRY|C Chain C, Crystal Structure Of Irak-4
pdb|2NRY|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 384 GRVSTNGDIYNFGIMIMETFTAKKPTDE 411
G ++ DIY+FG++++E T DE
Sbjct: 209 GEITPKSDIYSFGVVLLEIITGLPAVDE 236
>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4
pdb|2NRU|B Chain B, Crystal Structure Of Irak-4
pdb|2NRU|C Chain C, Crystal Structure Of Irak-4
pdb|2NRU|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 384 GRVSTNGDIYNFGIMIMETFTAKKPTDE 411
G ++ DIY+FG++++E T DE
Sbjct: 209 GEITPKSDIYSFGVVLLEIITGLPAVDE 236
>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain
pdb|2O8Y|B Chain B, Apo Irak4 Kinase Domain
Length = 298
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 384 GRVSTNGDIYNFGIMIMETFTAKKPTDE 411
G ++ DIY+FG++++E T DE
Sbjct: 200 GEITPKSDIYSFGVVLLEIITGLPAVDE 227
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,334,459
Number of Sequences: 62578
Number of extensions: 522564
Number of successful extensions: 2196
Number of sequences better than 100.0: 123
Number of HSP's better than 100.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 1387
Number of HSP's gapped (non-prelim): 450
length of query: 495
length of database: 14,973,337
effective HSP length: 103
effective length of query: 392
effective length of database: 8,527,803
effective search space: 3342898776
effective search space used: 3342898776
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)