Query 011044
Match_columns 495
No_of_seqs 515 out of 5024
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 19:38:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011044.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011044hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 2.5E-47 8.6E-52 411.1 22.1 349 5-363 5-386 (768)
2 4eco_A Uncharacterized protein 100.0 9.5E-45 3.2E-49 382.5 20.4 365 10-384 28-527 (636)
3 4ecn_A Leucine-rich repeat pro 100.0 5.3E-43 1.8E-47 375.8 24.7 355 7-379 264-785 (876)
4 1ogq_A PGIP-2, polygalacturona 100.0 7.9E-43 2.7E-47 336.0 22.5 294 7-308 1-302 (313)
5 3rgz_A Protein brassinosteroid 100.0 1.6E-41 5.4E-46 365.9 25.1 336 55-392 294-726 (768)
6 3v47_A TOLL-like receptor 5B a 100.0 5.5E-39 1.9E-43 326.1 23.2 328 54-384 29-409 (455)
7 3t6q_A CD180 antigen; protein- 100.0 1.6E-36 5.6E-41 319.1 28.7 302 54-358 32-413 (606)
8 4eco_A Uncharacterized protein 100.0 2E-37 6.9E-42 326.6 20.2 323 54-387 205-582 (636)
9 2id5_A Lingo-1, leucine rich r 100.0 2.1E-36 7.1E-41 309.0 26.3 313 45-359 13-334 (477)
10 3vq2_A TLR4, TOLL-like recepto 100.0 5.5E-36 1.9E-40 315.1 25.6 327 54-383 31-534 (606)
11 2id5_A Lingo-1, leucine rich r 100.0 7.5E-36 2.6E-40 304.9 23.4 323 57-385 13-335 (477)
12 2z7x_B TOLL-like receptor 1, v 100.0 1.1E-35 3.8E-40 306.9 23.8 315 55-383 21-457 (520)
13 3t6q_A CD180 antigen; protein- 100.0 2.7E-35 9.1E-40 309.9 26.9 327 54-383 56-462 (606)
14 2z63_A TOLL-like receptor 4, v 100.0 2.4E-35 8.3E-40 307.9 26.1 326 55-385 28-509 (570)
15 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.4E-35 1.2E-39 306.0 25.6 318 54-383 51-510 (562)
16 3vq2_A TLR4, TOLL-like recepto 100.0 1.9E-35 6.6E-40 311.0 23.7 207 175-385 349-560 (606)
17 3v47_A TOLL-like receptor 5B a 100.0 1.3E-35 4.4E-40 301.4 21.6 308 54-362 53-412 (455)
18 4ecn_A Leucine-rich repeat pro 100.0 9.6E-36 3.3E-40 319.6 21.6 323 54-387 447-822 (876)
19 3j0a_A TOLL-like receptor 5; m 100.0 6E-35 2.1E-39 317.8 26.0 314 41-358 12-375 (844)
20 1ziw_A TOLL-like receptor 3; i 100.0 1.8E-34 6E-39 307.8 28.2 325 54-380 24-440 (680)
21 2z81_A CD282 antigen, TOLL-lik 100.0 5.7E-35 1.9E-39 303.8 19.9 336 42-383 3-464 (549)
22 4fcg_A Uncharacterized protein 100.0 6.3E-35 2.1E-39 282.5 17.8 266 8-281 23-309 (328)
23 3oja_B Anopheles plasmodium-re 100.0 5E-34 1.7E-38 299.0 22.6 309 55-384 51-359 (597)
24 3j0a_A TOLL-like receptor 5; m 100.0 2.9E-33 1E-37 304.5 28.1 321 58-383 7-375 (844)
25 3o6n_A APL1; leucine-rich repe 100.0 9.2E-34 3.1E-38 281.7 22.0 309 55-384 45-353 (390)
26 2z7x_B TOLL-like receptor 1, v 100.0 7.6E-34 2.6E-38 293.2 21.0 311 58-383 3-434 (520)
27 1ziw_A TOLL-like receptor 3; i 100.0 6.9E-33 2.4E-37 295.4 27.9 327 56-384 249-598 (680)
28 4g8a_A TOLL-like receptor 4; l 100.0 2.1E-32 7.2E-37 289.2 29.1 142 54-196 51-193 (635)
29 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 6.5E-33 2.2E-37 288.8 24.5 313 57-384 33-487 (562)
30 2z63_A TOLL-like receptor 4, v 100.0 1.2E-32 4E-37 287.7 24.5 189 197-387 344-535 (570)
31 4fmz_A Internalin; leucine ric 100.0 3.5E-32 1.2E-36 265.9 25.3 304 54-383 43-346 (347)
32 2z81_A CD282 antigen, TOLL-lik 100.0 3.7E-33 1.3E-37 290.1 19.0 318 54-385 49-488 (549)
33 1ogq_A PGIP-2, polygalacturona 100.0 2.5E-33 8.6E-38 269.7 16.0 249 79-332 50-302 (313)
34 1o6v_A Internalin A; bacterial 100.0 9.7E-32 3.3E-36 273.4 25.5 303 54-384 67-389 (466)
35 1xku_A Decorin; proteoglycan, 100.0 2E-31 6.9E-36 258.7 23.9 288 57-356 33-330 (330)
36 2ft3_A Biglycan; proteoglycan, 100.0 2.1E-31 7.2E-36 258.7 23.4 288 56-356 34-331 (332)
37 1xku_A Decorin; proteoglycan, 100.0 4.3E-31 1.5E-35 256.3 25.1 283 41-332 29-330 (330)
38 2ft3_A Biglycan; proteoglycan, 100.0 3.4E-31 1.1E-35 257.3 24.2 267 55-331 54-330 (332)
39 3o6n_A APL1; leucine-rich repe 100.0 4E-31 1.4E-35 262.7 24.8 286 55-360 69-354 (390)
40 4fmz_A Internalin; leucine ric 100.0 6.3E-31 2.1E-35 257.1 25.6 282 54-358 65-346 (347)
41 3oja_B Anopheles plasmodium-re 100.0 7.2E-31 2.5E-35 275.0 24.5 286 55-360 75-360 (597)
42 1o6v_A Internalin A; bacterial 100.0 1.8E-30 6.2E-35 264.0 26.4 304 55-386 46-369 (466)
43 3bz5_A Internalin-J, INLJ; leu 100.0 2.3E-30 7.9E-35 261.5 25.8 206 55-287 42-247 (457)
44 3bz5_A Internalin-J, INLJ; leu 100.0 3.4E-29 1.1E-33 253.0 26.7 276 54-359 63-353 (457)
45 4g8a_A TOLL-like receptor 4; l 100.0 7.2E-29 2.5E-33 262.1 26.2 157 60-220 36-193 (635)
46 2z66_A Variable lymphocyte rec 100.0 1.1E-29 3.7E-34 243.8 16.3 253 41-311 5-262 (306)
47 2z80_A TOLL-like receptor 2, v 100.0 1.5E-29 5.1E-34 247.9 17.4 277 35-336 22-316 (353)
48 2z80_A TOLL-like receptor 2, v 100.0 3.9E-29 1.3E-33 244.9 16.4 289 60-385 36-333 (353)
49 1z7x_W Ribonuclease inhibitor; 100.0 1.1E-31 3.9E-36 272.7 -4.3 330 54-383 2-383 (461)
50 1ozn_A Reticulon 4 receptor; N 100.0 4E-28 1.4E-32 230.4 19.9 225 58-287 14-239 (285)
51 4fcg_A Uncharacterized protein 100.0 4.2E-28 1.4E-32 234.6 19.7 269 26-307 26-311 (328)
52 1ozn_A Reticulon 4 receptor; N 100.0 7.5E-28 2.6E-32 228.5 19.1 239 54-294 31-269 (285)
53 2z66_A Variable lymphocyte rec 100.0 1E-27 3.5E-32 230.0 18.5 229 129-359 29-262 (306)
54 1jl5_A Outer protein YOPM; leu 100.0 1.3E-26 4.4E-31 233.9 26.4 280 55-384 91-371 (454)
55 1jl5_A Outer protein YOPM; leu 100.0 7.4E-28 2.5E-32 243.0 16.6 251 55-335 11-291 (454)
56 3zyi_A Leucine-rich repeat-con 100.0 7.4E-27 2.5E-31 236.4 23.9 247 57-310 56-303 (452)
57 3zyj_A Leucine-rich repeat-con 100.0 6.4E-27 2.2E-31 236.0 22.3 247 81-334 45-292 (440)
58 3zyi_A Leucine-rich repeat-con 99.9 6.3E-27 2.1E-31 236.9 21.9 247 81-334 56-303 (452)
59 1wwl_A Monocyte differentiatio 99.9 1.1E-29 3.9E-34 244.2 1.2 203 127-335 94-310 (312)
60 3g06_A SSPH2 (leucine-rich rep 99.9 4.5E-27 1.5E-31 244.5 20.6 284 31-363 11-302 (622)
61 3zyj_A Leucine-rich repeat-con 99.9 1.1E-26 3.8E-31 234.3 22.7 248 57-311 45-293 (440)
62 1z7x_W Ribonuclease inhibitor; 99.9 6.9E-30 2.4E-34 259.6 -0.9 326 55-383 28-411 (461)
63 1wwl_A Monocyte differentiatio 99.9 1.4E-28 4.7E-33 236.6 6.8 250 99-359 39-310 (312)
64 3o53_A Protein LRIM1, AGAP0063 99.9 4.4E-28 1.5E-32 233.6 6.4 261 55-331 10-272 (317)
65 2o6q_A Variable lymphocyte rec 99.9 6.6E-26 2.3E-30 213.2 21.1 217 41-262 3-219 (270)
66 3o53_A Protein LRIM1, AGAP0063 99.9 2.3E-27 7.9E-32 228.6 8.0 244 122-380 28-272 (317)
67 3oja_A Leucine-rich immune mol 99.9 1.7E-26 5.6E-31 235.4 9.4 235 79-329 34-270 (487)
68 3oja_A Leucine-rich immune mol 99.9 5.6E-26 1.9E-30 231.5 13.0 236 128-378 34-270 (487)
69 2z62_A TOLL-like receptor 4, v 99.9 3.8E-24 1.3E-28 201.9 18.8 205 55-261 28-237 (276)
70 2z62_A TOLL-like receptor 4, v 99.9 4.8E-24 1.7E-28 201.2 19.2 162 61-226 13-175 (276)
71 3g06_A SSPH2 (leucine-rich rep 99.9 3.1E-23 1.1E-27 215.7 25.0 261 79-386 40-300 (622)
72 3rfs_A Internalin B, repeat mo 99.9 4.8E-24 1.7E-28 200.6 17.0 224 59-297 23-246 (272)
73 2ast_B S-phase kinase-associat 99.9 1.1E-25 3.6E-30 218.9 5.0 234 42-283 36-282 (336)
74 3rfs_A Internalin B, repeat mo 99.9 3.2E-23 1.1E-27 195.0 18.2 203 55-269 41-243 (272)
75 3ogk_B Coronatine-insensitive 99.9 2.8E-26 9.7E-31 240.4 -3.1 326 56-384 139-527 (592)
76 2o6q_A Variable lymphocyte rec 99.9 7.1E-23 2.4E-27 192.5 20.4 204 35-239 6-220 (270)
77 3m19_A Variable lymphocyte rec 99.9 6.5E-23 2.2E-27 190.5 18.2 191 41-238 3-193 (251)
78 1p9a_G Platelet glycoprotein I 99.9 1.3E-22 4.5E-27 192.4 19.7 175 56-237 11-185 (290)
79 2ca6_A RAN GTPase-activating p 99.9 1.1E-24 3.8E-29 215.9 3.5 245 70-337 23-319 (386)
80 1p9a_G Platelet glycoprotein I 99.9 1.9E-22 6.5E-27 191.3 18.4 179 75-260 6-184 (290)
81 3goz_A Leucine-rich repeat-con 99.9 2.8E-24 9.6E-29 210.9 5.9 258 59-336 2-299 (362)
82 3goz_A Leucine-rich repeat-con 99.9 3.4E-24 1.1E-28 210.4 6.3 257 84-360 3-299 (362)
83 2ca6_A RAN GTPase-activating p 99.9 1.2E-24 4.2E-29 215.5 2.0 234 127-361 31-319 (386)
84 2ast_B S-phase kinase-associat 99.9 9E-24 3.1E-28 205.2 7.1 251 105-365 49-313 (336)
85 3ogk_B Coronatine-insensitive 99.9 2.6E-25 9E-30 233.0 -4.3 328 55-383 112-501 (592)
86 2xwt_C Thyrotropin receptor; s 99.9 2.5E-22 8.4E-27 185.2 16.0 196 80-283 32-236 (239)
87 4glp_A Monocyte differentiatio 99.9 7.7E-23 2.6E-27 196.3 11.9 226 79-311 64-308 (310)
88 4glp_A Monocyte differentiatio 99.9 1.1E-22 3.9E-27 195.1 12.6 229 102-358 63-307 (310)
89 2p1m_B Transport inhibitor res 99.9 6.7E-25 2.3E-29 230.0 -6.7 326 55-382 105-518 (594)
90 2xwt_C Thyrotropin receptor; s 99.9 8.9E-22 3.1E-26 181.4 14.4 196 129-331 32-236 (239)
91 3m19_A Variable lymphocyte rec 99.9 8E-21 2.7E-25 176.4 19.1 181 79-263 14-194 (251)
92 1h6u_A Internalin H; cell adhe 99.9 8.8E-21 3E-25 181.5 18.8 188 56-260 42-229 (308)
93 2o6s_A Variable lymphocyte rec 99.9 3.3E-21 1.1E-25 173.6 14.9 187 40-249 4-190 (208)
94 4ay9_X Follicle-stimulating ho 99.9 3.3E-21 1.1E-25 188.0 16.0 246 41-307 7-256 (350)
95 1h6u_A Internalin H; cell adhe 99.9 7.2E-21 2.5E-25 182.1 17.6 205 62-286 26-230 (308)
96 3cvr_A Invasion plasmid antige 99.9 3.2E-21 1.1E-25 198.2 14.3 204 35-269 35-251 (571)
97 2p1m_B Transport inhibitor res 99.8 4.6E-24 1.6E-28 223.7 -8.0 328 54-383 65-494 (594)
98 2o6s_A Variable lymphocyte rec 99.8 8.3E-20 2.8E-24 164.4 16.8 162 128-297 28-189 (208)
99 4ay9_X Follicle-stimulating ho 99.8 7.7E-20 2.6E-24 178.4 16.9 200 82-286 12-215 (350)
100 3cvr_A Invasion plasmid antige 99.8 3E-19 1E-23 183.5 16.7 186 80-295 60-252 (571)
101 3e6j_A Variable lymphocyte rec 99.8 6E-19 2.1E-23 161.2 16.6 162 35-213 11-172 (229)
102 1h6t_A Internalin B; cell adhe 99.8 1.2E-18 4.1E-23 165.2 15.2 171 76-261 43-213 (291)
103 1h6t_A Internalin B; cell adhe 99.8 1.5E-18 5.3E-23 164.5 15.6 171 55-240 46-216 (291)
104 1m9s_A Internalin B; cell inva 99.8 2.8E-18 9.4E-23 178.2 18.2 172 75-261 39-210 (605)
105 4b8c_D Glucose-repressible alc 99.8 3.1E-20 1.1E-24 197.6 3.6 234 9-258 129-369 (727)
106 2v70_A SLIT-2, SLIT homolog 2 99.8 3.1E-18 1E-22 155.4 15.5 150 59-212 15-165 (220)
107 2v70_A SLIT-2, SLIT homolog 2 99.8 7E-18 2.4E-22 153.0 15.6 133 130-262 34-167 (220)
108 1m9s_A Internalin B; cell inva 99.8 6E-18 2.1E-22 175.7 17.1 177 55-246 43-219 (605)
109 2v9t_B SLIT homolog 2 protein 99.8 7.1E-18 2.4E-22 153.0 15.4 150 60-213 16-165 (220)
110 2v9t_B SLIT homolog 2 protein 99.8 7.9E-18 2.7E-22 152.7 15.4 134 128-261 32-165 (220)
111 2xot_A Amphoterin-induced prot 99.8 7.1E-18 2.4E-22 165.1 15.0 177 82-261 21-202 (361)
112 2xot_A Amphoterin-induced prot 99.8 8.6E-18 3E-22 164.5 15.4 175 59-237 22-202 (361)
113 4ezg_A Putative uncharacterize 99.8 7.3E-18 2.5E-22 150.2 13.5 152 76-236 41-193 (197)
114 3e6j_A Variable lymphocyte rec 99.7 3.2E-17 1.1E-21 149.7 16.3 133 128-261 40-172 (229)
115 4ezg_A Putative uncharacterize 99.7 1.8E-17 6.1E-22 147.7 13.9 153 100-261 41-194 (197)
116 1xeu_A Internalin C; cellular 99.7 1.6E-17 5.4E-22 155.0 9.5 166 56-237 20-185 (263)
117 1dce_A Protein (RAB geranylger 99.7 2.8E-19 9.6E-24 184.6 -3.0 178 76-261 346-546 (567)
118 1xeu_A Internalin C; cellular 99.7 1.3E-17 4.5E-22 155.5 7.7 169 77-261 17-185 (263)
119 4b8c_D Glucose-repressible alc 99.7 2.2E-17 7.4E-22 175.8 9.0 187 79-291 173-359 (727)
120 3sb4_A Hypothetical leucine ri 99.7 1.4E-17 4.7E-22 161.0 6.5 218 151-376 100-327 (329)
121 1dce_A Protein (RAB geranylger 99.7 8.1E-19 2.8E-23 181.1 -4.9 187 149-359 346-547 (567)
122 2ell_A Acidic leucine-rich nuc 99.7 3E-16 1E-20 135.9 11.2 133 54-189 23-160 (168)
123 1w8a_A SLIT protein; signaling 99.7 6.9E-16 2.4E-20 136.7 13.1 131 131-264 11-142 (192)
124 3sb4_A Hypothetical leucine ri 99.6 4.6E-16 1.6E-20 150.2 11.3 243 127-382 48-309 (329)
125 1w8a_A SLIT protein; signaling 99.6 1.1E-15 3.8E-20 135.3 12.9 129 59-191 12-141 (192)
126 2ell_A Acidic leucine-rich nuc 99.6 7.1E-16 2.4E-20 133.5 11.1 107 129-237 25-133 (168)
127 2je0_A Acidic leucine-rich nuc 99.6 3.9E-16 1.3E-20 132.3 9.2 127 55-184 17-148 (149)
128 2je0_A Acidic leucine-rich nuc 99.6 1.1E-15 3.6E-20 129.6 9.2 109 128-238 17-127 (149)
129 4fdw_A Leucine rich hypothetic 99.6 1E-13 3.4E-18 136.9 20.6 247 78-358 112-358 (401)
130 4fdw_A Leucine rich hypothetic 99.6 1.1E-13 3.8E-18 136.6 20.1 262 56-356 114-381 (401)
131 2wfh_A SLIT homolog 2 protein 99.6 2.8E-14 9.7E-19 126.3 14.0 108 153-261 32-139 (193)
132 2wfh_A SLIT homolog 2 protein 99.6 3.3E-14 1.1E-18 125.9 14.3 125 59-188 14-138 (193)
133 2o6r_A Variable lymphocyte rec 99.6 4E-14 1.4E-18 123.5 13.7 85 129-213 29-113 (177)
134 2o6r_A Variable lymphocyte rec 99.5 5.5E-14 1.9E-18 122.7 13.9 133 130-265 9-141 (177)
135 1a9n_A U2A', U2A'; complex (nu 99.5 4.3E-14 1.5E-18 123.2 10.3 132 99-236 15-152 (176)
136 1ds9_A Outer arm dynein; leuci 99.5 1.4E-16 4.7E-21 142.1 -6.8 128 56-189 19-153 (198)
137 1ds9_A Outer arm dynein; leuci 99.5 2.4E-16 8.1E-21 140.5 -5.4 133 75-213 14-153 (198)
138 1a9n_A U2A', U2A'; complex (nu 99.5 8.3E-14 2.8E-18 121.4 10.3 127 55-188 19-152 (176)
139 4fs7_A Uncharacterized protein 99.4 1.7E-11 5.7E-16 121.3 19.4 291 73-380 65-376 (394)
140 3un9_A NLR family member X1; l 99.4 1.4E-14 4.8E-19 141.6 -2.8 160 79-238 72-253 (372)
141 3g39_A Variable lymphocyte rec 99.3 6E-12 2.1E-16 108.8 12.1 36 154-189 32-67 (170)
142 3g39_A Variable lymphocyte rec 99.3 5.9E-12 2E-16 108.8 11.4 108 153-263 10-117 (170)
143 2r9u_A Variable lymphocyte rec 99.3 8.9E-12 3E-16 108.1 11.9 83 153-235 34-116 (174)
144 3un9_A NLR family member X1; l 99.3 5.3E-14 1.8E-18 137.5 -3.2 168 55-222 72-261 (372)
145 2r9u_A Variable lymphocyte rec 99.3 1E-11 3.5E-16 107.7 11.5 105 154-261 14-118 (174)
146 4fs7_A Uncharacterized protein 99.2 2.5E-10 8.5E-15 112.8 18.0 286 55-355 71-376 (394)
147 4gt6_A Cell surface protein; l 99.2 3.7E-10 1.3E-14 111.6 19.2 306 57-380 66-388 (394)
148 2ifg_A High affinity nerve gro 99.1 1.8E-10 6.3E-15 111.7 12.0 108 42-165 7-116 (347)
149 2ifg_A High affinity nerve gro 99.1 2.3E-10 7.8E-15 111.0 11.4 104 132-238 12-117 (347)
150 4gt6_A Cell surface protein; l 99.1 6.1E-09 2.1E-13 102.8 19.9 296 71-379 55-366 (394)
151 2ra8_A Uncharacterized protein 99.0 8.4E-11 2.9E-15 113.9 3.6 210 54-284 106-341 (362)
152 4h09_A Hypothetical leucine ri 99.0 5.5E-08 1.9E-12 95.4 22.4 283 56-353 47-341 (379)
153 2ra8_A Uncharacterized protein 98.9 1.1E-09 3.7E-14 106.1 7.5 133 54-189 138-292 (362)
154 4h09_A Hypothetical leucine ri 98.8 5.8E-07 2E-11 88.0 21.5 276 55-345 69-356 (379)
155 3omv_A RAF proto-oncogene seri 98.8 1.3E-09 4.3E-14 103.0 1.3 93 384-491 212-304 (307)
156 3hmm_A TGF-beta receptor type- 98.8 5E-09 1.7E-13 99.2 5.2 95 384-487 193-297 (303)
157 4gt4_A Tyrosine-protein kinase 98.7 2.6E-09 8.8E-14 101.2 0.9 87 379-485 217-304 (308)
158 3rw6_A Nuclear RNA export fact 98.7 2.5E-10 8.7E-15 104.9 -6.6 63 126-190 168-234 (267)
159 4aoj_A High affinity nerve gro 98.6 9.2E-09 3.2E-13 98.3 3.3 90 378-487 229-319 (329)
160 4asz_A BDNF/NT-3 growth factor 98.6 8E-09 2.7E-13 97.3 2.0 87 382-488 203-290 (299)
161 1io0_A Tropomodulin; LRR prote 98.6 6.8E-09 2.3E-13 90.7 1.4 95 70-165 27-136 (185)
162 2qkw_B Protein kinase; three-h 98.5 8.6E-08 3E-12 91.6 5.7 98 384-487 216-315 (321)
163 1io0_A Tropomodulin; LRR prote 98.5 5.8E-08 2E-12 84.7 3.4 14 247-260 150-163 (185)
164 4ase_A Vascular endothelial gr 98.4 4E-08 1.4E-12 94.7 1.4 86 382-487 260-347 (353)
165 3uim_A Brassinosteroid insensi 98.4 8.1E-08 2.8E-12 92.0 3.5 95 384-484 210-308 (326)
166 3soc_A Activin receptor type-2 98.3 6.1E-07 2.1E-11 85.7 5.3 96 384-488 213-319 (322)
167 3q4u_A Activin receptor type-1 98.3 6.5E-07 2.2E-11 84.5 5.2 92 385-485 199-300 (301)
168 1b6c_B TGF-B superfamily recep 98.2 8.6E-07 2.9E-11 85.3 5.1 94 386-488 234-337 (342)
169 3gxj_A TGF-beta receptor type- 98.2 4.1E-07 1.4E-11 85.9 2.0 94 385-487 194-297 (303)
170 2nru_A Interleukin-1 receptor- 98.2 6.2E-07 2.1E-11 84.9 3.2 95 385-487 210-306 (307)
171 3mdy_A Bone morphogenetic prot 98.2 2.3E-06 7.8E-11 82.1 6.8 90 389-487 232-331 (337)
172 3rw6_A Nuclear RNA export fact 98.2 2.7E-06 9.2E-11 78.1 6.7 80 149-230 167-257 (267)
173 3e4g_A ATP synthase subunit S, 98.1 1E-06 3.4E-11 75.1 3.5 83 55-138 61-149 (176)
174 3op5_A Serine/threonine-protei 98.1 2.7E-07 9.1E-12 89.9 -0.6 96 383-488 235-330 (364)
175 3e4g_A ATP synthase subunit S, 98.1 2E-06 6.8E-11 73.2 4.2 14 173-186 82-95 (176)
176 3fpq_A Serine/threonine-protei 98.0 1.5E-06 5.3E-11 81.1 2.5 78 385-480 205-282 (290)
177 2eva_A TAK1 kinase - TAB1 chim 98.0 1.4E-06 4.7E-11 82.6 1.8 87 383-487 177-263 (307)
178 3lb7_A RAF proto-oncogene seri 98.0 6.7E-07 2.3E-11 84.8 -0.6 92 384-490 212-303 (307)
179 3cbl_A C-FES, proto-oncogene t 98.0 1.7E-06 6E-11 84.5 1.6 86 383-488 289-375 (377)
180 2jii_A Serine/threonine-protei 98.0 1.7E-06 5.8E-11 83.7 1.3 96 383-488 242-337 (352)
181 3poz_A Epidermal growth factor 97.9 1.8E-06 6.1E-11 82.7 1.4 85 383-487 193-278 (327)
182 3s95_A LIMK-1, LIM domain kina 97.9 1.5E-06 5.1E-11 82.4 0.7 86 382-489 195-284 (310)
183 3uzp_A CKI-delta, CKID, casein 97.9 1.9E-06 6.5E-11 81.0 1.2 91 383-488 189-281 (296)
184 3kmu_A ILK, integrin-linked ki 97.9 2.5E-06 8.6E-11 78.9 2.0 81 388-487 190-270 (271)
185 3ugc_A Tyrosine-protein kinase 97.9 1.4E-06 4.8E-11 81.9 0.2 99 384-488 192-292 (295)
186 2wqm_A Serine/threonine-protei 97.9 5.6E-06 1.9E-10 78.4 3.7 89 383-488 210-298 (310)
187 3og7_A AKAP9-BRAF fusion prote 97.9 1.8E-06 6.2E-11 81.0 0.2 88 384-486 200-287 (289)
188 3p86_A Serine/threonine-protei 97.9 6.4E-06 2.2E-10 78.1 3.9 88 383-490 213-301 (309)
189 4hgt_A Casein kinase I isoform 97.9 3.3E-06 1.1E-10 79.2 1.8 92 383-489 189-282 (296)
190 4g3f_A NF-kappa-beta-inducing 97.9 3.6E-06 1.2E-10 80.2 1.7 87 383-487 230-316 (336)
191 2y4i_B KSR2, HKSR2, kinase sup 97.8 4.9E-06 1.7E-10 79.1 2.3 86 385-489 219-304 (319)
192 2qol_A Ephrin receptor; recept 97.8 2.3E-06 7.7E-11 83.5 -0.3 85 384-488 225-310 (373)
193 2buj_A Serine/threonine-protei 97.8 3.1E-06 1.1E-10 80.4 0.6 84 386-487 223-306 (317)
194 1k9a_A Carboxyl-terminal SRC k 97.8 5.7E-06 1.9E-10 82.9 2.5 86 383-488 360-446 (450)
195 4f0f_A Serine/threonine-protei 97.8 3.5E-06 1.2E-10 78.8 0.9 85 384-485 203-287 (287)
196 1csn_A Casein kinase-1; phosph 97.8 2.9E-06 9.9E-11 79.8 0.2 93 383-488 192-284 (298)
197 3lxp_A Non-receptor tyrosine-p 97.8 5.6E-07 1.9E-11 85.8 -5.3 95 384-490 212-313 (318)
198 2w1i_A JAK2; chromosomal rearr 97.8 3.6E-06 1.2E-10 80.4 0.1 94 384-489 223-324 (326)
199 3dtc_A Mitogen-activated prote 97.8 9.3E-06 3.2E-10 75.1 2.9 83 384-485 189-271 (271)
200 3pls_A Macrophage-stimulating 97.7 9.7E-06 3.3E-10 76.1 2.7 88 383-489 202-289 (298)
201 2v62_A Serine/threonine-protei 97.7 1.6E-06 5.3E-11 83.7 -3.0 93 384-486 235-327 (345)
202 3vhe_A Vascular endothelial gr 97.7 8.8E-06 3E-10 78.8 2.3 86 384-488 270-356 (359)
203 3sv0_A Casein kinase I-like; t 97.7 5.2E-06 1.8E-10 83.7 0.5 93 383-488 187-279 (483)
204 3g2f_A Bone morphogenetic prot 97.7 1.1E-05 3.8E-10 77.3 2.7 97 385-489 211-320 (336)
205 2i1m_A Macrophage colony-stimu 97.7 1.4E-05 4.9E-10 76.4 3.5 87 384-489 241-328 (333)
206 3kul_A Ephrin type-A receptor 97.7 1.4E-05 4.9E-10 76.2 3.5 84 384-487 229-313 (325)
207 3sxs_A Cytoplasmic tyrosine-pr 97.7 1.3E-05 4.3E-10 74.1 2.9 85 384-488 180-265 (268)
208 3tt0_A Basic fibroblast growth 97.7 1.2E-05 4.1E-10 78.7 2.9 85 383-487 267-352 (382)
209 4hcu_A Tyrosine-protein kinase 97.7 1.8E-05 6.1E-10 73.2 3.7 85 384-488 182-267 (269)
210 2psq_A Fibroblast growth facto 97.7 1.1E-05 3.8E-10 78.5 2.3 85 383-487 279-364 (370)
211 1luf_A Muscle-specific tyrosin 97.7 1.2E-05 4.1E-10 77.2 2.5 86 384-489 251-337 (343)
212 1byg_A CSK, protein (C-termina 97.7 1E-05 3.6E-10 75.2 2.0 86 384-489 189-275 (278)
213 1qcf_A Haematopoetic cell kina 97.7 1.1E-05 3.8E-10 80.9 2.3 83 384-486 360-443 (454)
214 3brb_A Proto-oncogene tyrosine 97.7 2E-05 7E-10 74.6 3.9 85 384-488 224-309 (313)
215 3kex_A Receptor tyrosine-prote 97.7 1.7E-05 5.8E-10 75.7 3.1 83 384-486 192-275 (325)
216 3cc6_A Protein tyrosine kinase 97.7 2.3E-05 7.9E-10 72.9 4.0 85 384-488 189-274 (281)
217 3lzb_A Epidermal growth factor 97.7 1.7E-05 5.7E-10 75.8 3.0 84 384-487 194-278 (327)
218 2ozo_A Tyrosine-protein kinase 97.7 1.2E-05 4E-10 83.8 2.0 86 383-488 513-599 (613)
219 1mp8_A Focal adhesion kinase 1 97.7 1.9E-05 6.4E-10 73.6 3.2 84 385-488 193-277 (281)
220 1t46_A HOMO sapiens V-KIT hard 97.7 1.8E-05 6.2E-10 74.8 3.1 86 384-488 222-308 (313)
221 1u46_A ACK-1, activated CDC42 97.7 1.9E-05 6.5E-10 73.8 3.2 86 384-488 199-285 (291)
222 3f66_A Hepatocyte growth facto 97.7 1.3E-05 4.4E-10 75.4 2.0 87 384-489 207-293 (298)
223 1opk_A P150, C-ABL, proto-onco 97.6 1.1E-05 3.9E-10 81.7 1.5 83 383-485 393-476 (495)
224 3c1x_A Hepatocyte growth facto 97.6 1.9E-05 6.6E-10 76.9 3.0 86 383-488 270-356 (373)
225 3l9p_A Anaplastic lymphoma kin 97.6 2.6E-05 8.8E-10 75.8 3.7 84 384-487 261-345 (367)
226 3t9t_A Tyrosine-protein kinase 97.6 3E-05 1E-09 71.4 4.0 85 384-488 180-265 (267)
227 2ivs_A Proto-oncogene tyrosine 97.6 1.9E-05 6.3E-10 74.8 2.4 84 384-487 227-311 (314)
228 3qup_A Tyrosine-protein kinase 97.6 2.5E-05 8.5E-10 74.3 3.2 83 385-487 215-298 (323)
229 2pvf_A Fibroblast growth facto 97.6 2.5E-05 8.5E-10 74.8 3.2 84 384-487 234-318 (334)
230 1qpc_A LCK kinase; alpha beta 97.6 3E-05 1E-09 72.0 3.6 85 384-488 185-270 (279)
231 3ll6_A Cyclin G-associated kin 97.6 1.9E-05 6.7E-10 75.4 2.3 82 384-488 228-309 (337)
232 1u59_A Tyrosine-protein kinase 97.6 2.5E-05 8.6E-10 72.9 2.9 85 384-488 188-273 (287)
233 1xbb_A Tyrosine-protein kinase 97.6 2.7E-05 9.2E-10 72.9 3.1 84 384-487 195-279 (291)
234 1mqb_A Ephrin type-A receptor 97.6 3.8E-05 1.3E-09 73.5 4.0 85 383-487 224-309 (333)
235 2a19_B Interferon-induced, dou 97.6 1.2E-05 4.1E-10 74.9 0.4 83 384-491 196-278 (284)
236 2izr_A Casein kinase I isoform 97.6 1.4E-05 4.7E-10 76.4 0.8 92 383-488 191-282 (330)
237 1fmk_A C-SRC, P60-SRC, tyrosin 97.6 2.5E-05 8.4E-10 78.3 2.6 84 383-486 355-439 (452)
238 1t4h_A Serine/threonine-protei 97.6 2.6E-05 8.8E-10 73.0 2.5 78 385-480 205-282 (290)
239 3lxl_A Tyrosine-protein kinase 97.5 1.7E-05 5.8E-10 75.7 1.2 89 384-486 205-302 (327)
240 2xir_A Vascular endothelial gr 97.5 2.3E-05 7.9E-10 74.2 2.2 86 384-488 225-311 (316)
241 3gen_A Tyrosine-protein kinase 97.5 3.7E-05 1.3E-09 71.6 3.5 84 384-487 196-280 (283)
242 3dbq_A Dual specificity protei 97.5 2.8E-05 9.6E-10 74.8 2.5 79 384-480 195-273 (343)
243 4fvq_A Tyrosine-protein kinase 97.5 3.2E-05 1.1E-09 72.2 2.7 83 384-487 193-275 (289)
244 3kfa_A Tyrosine-protein kinase 97.5 4E-05 1.4E-09 71.5 3.3 84 384-487 187-271 (288)
245 4e5w_A Tyrosine-protein kinase 97.5 2.2E-05 7.6E-10 73.8 1.5 88 384-486 204-301 (302)
246 1rjb_A FL cytokine receptor; k 97.5 4.2E-05 1.4E-09 73.5 3.4 86 384-488 249-335 (344)
247 2zmd_A Dual specificity protei 97.5 3.1E-05 1.1E-09 75.9 2.5 78 385-480 243-320 (390)
248 4fl3_A Tyrosine-protein kinase 97.5 4.3E-05 1.5E-09 79.8 3.5 85 383-487 546-631 (635)
249 2yfx_A Tyrosine-protein kinase 97.5 5.6E-05 1.9E-09 72.1 3.7 84 384-487 220-304 (327)
250 2h8h_A Proto-oncogene tyrosine 97.5 3.8E-05 1.3E-09 78.6 2.5 83 383-485 438-521 (535)
251 1fvr_A Tyrosine-protein kinase 97.4 7.2E-05 2.5E-09 71.3 3.7 83 385-487 217-300 (327)
252 2c30_A Serine/threonine-protei 97.4 4.5E-05 1.5E-09 72.6 2.2 81 382-480 214-294 (321)
253 3cek_A Dual specificity protei 97.4 5.1E-05 1.7E-09 71.8 2.6 79 384-480 214-292 (313)
254 3an0_A Dual specificity mitoge 97.4 3.9E-05 1.3E-09 73.6 1.7 78 385-480 233-310 (340)
255 3fme_A Dual specificity mitoge 97.4 3.5E-05 1.2E-09 71.9 1.3 79 384-480 188-266 (290)
256 2h34_A Serine/threonine-protei 97.4 9.9E-05 3.4E-09 69.7 4.3 89 379-485 205-294 (309)
257 1p4o_A Insulin-like growth fac 97.4 3.8E-05 1.3E-09 73.0 1.3 84 384-487 215-299 (322)
258 1u5q_A Serine/threonine protei 97.4 5.4E-05 1.8E-09 72.9 2.1 79 383-480 227-305 (348)
259 4eut_A Serine/threonine-protei 97.3 0.00013 4.3E-09 71.7 4.7 102 385-487 199-309 (396)
260 2yex_A Serine/threonine-protei 97.3 3.5E-05 1.2E-09 71.4 0.5 76 387-480 186-261 (276)
261 4b9d_A Serine/threonine-protei 97.3 4.5E-05 1.5E-09 73.0 1.1 76 385-480 201-276 (350)
262 1pgv_A TMD-1, tropomodulin TMD 97.3 0.00011 3.9E-09 63.6 3.4 90 71-161 33-135 (197)
263 3fxz_A Serine/threonine-protei 97.3 4.2E-05 1.4E-09 71.9 0.7 79 384-480 191-269 (297)
264 2dyl_A Dual specificity mitoge 97.3 7.5E-05 2.6E-09 70.7 2.2 80 384-480 204-283 (318)
265 3aln_A Dual specificity mitoge 97.3 3.8E-05 1.3E-09 73.2 -0.0 82 384-480 204-285 (327)
266 3is5_A Calcium-dependent prote 97.3 8.4E-05 2.9E-09 69.3 2.3 77 385-480 201-278 (285)
267 4euu_A Serine/threonine-protei 97.2 0.00022 7.6E-09 67.5 5.0 102 383-485 197-307 (319)
268 1pgv_A TMD-1, tropomodulin TMD 97.2 0.00017 5.8E-09 62.5 3.7 42 148-189 66-111 (197)
269 3uqc_A Probable conserved tran 97.2 6.9E-05 2.3E-09 70.0 1.2 88 385-487 178-265 (286)
270 2w4o_A Calcium/calmodulin-depe 97.2 0.00012 4E-09 70.6 2.9 83 382-480 223-305 (349)
271 4fih_A Serine/threonine-protei 97.2 9E-05 3.1E-09 70.7 2.0 79 384-480 245-323 (346)
272 3hyh_A Carbon catabolite-derep 97.2 0.00013 4.4E-09 67.5 2.7 73 387-480 190-262 (275)
273 2vwi_A Serine/threonine-protei 97.2 7.2E-05 2.5E-09 70.2 1.0 80 386-480 204-287 (303)
274 2j0j_A Focal adhesion kinase 1 97.2 0.00015 5.2E-09 76.0 3.4 84 384-487 567-651 (656)
275 3tki_A Serine/threonine-protei 97.2 4.9E-05 1.7E-09 72.4 -0.3 76 387-480 186-261 (323)
276 3byv_A Rhoptry kinase; malaria 97.2 0.00011 3.7E-09 71.6 2.1 78 385-487 289-368 (377)
277 4eqm_A Protein kinase; transfe 97.2 8.1E-05 2.8E-09 69.8 1.0 86 384-485 187-273 (294)
278 2j7t_A Serine/threonine-protei 97.2 0.00014 4.7E-09 68.3 2.4 80 383-480 196-275 (302)
279 3m2w_A MAP kinase-activated pr 97.1 7E-05 2.4E-09 70.4 0.2 84 384-480 173-256 (299)
280 3p1a_A MYT1 kinase, membrane-a 97.1 3.8E-05 1.3E-09 72.7 -1.8 74 385-480 231-304 (311)
281 2w5a_A Serine/threonine-protei 97.1 0.00012 4E-09 67.9 1.5 78 385-482 192-269 (279)
282 3com_A Serine/threonine-protei 97.1 0.00018 6.3E-09 67.9 2.6 80 383-480 199-278 (314)
283 3hko_A Calcium/calmodulin-depe 97.1 0.00022 7.6E-09 68.3 3.2 80 384-480 251-330 (345)
284 1wak_A Serine/threonine-protei 97.1 0.00014 4.9E-09 71.1 1.8 29 452-480 363-391 (397)
285 3llt_A Serine/threonine kinase 97.1 0.00031 1.1E-08 67.8 4.2 32 379-410 229-260 (360)
286 2rio_A Serine/threonine-protei 97.1 0.00017 5.7E-09 71.8 2.2 81 384-480 214-295 (434)
287 3fhr_A MAP kinase-activated pr 97.1 7.7E-05 2.6E-09 71.4 -0.2 85 383-480 203-287 (336)
288 2zv2_A Calcium/calmodulin-depe 97.1 0.00013 4.5E-09 68.4 1.3 75 387-480 218-292 (298)
289 2clq_A Mitogen-activated prote 97.1 7.8E-05 2.7E-09 69.7 -0.2 77 386-480 202-278 (295)
290 3cok_A Serine/threonine-protei 97.1 0.00014 4.7E-09 67.4 1.3 76 384-480 187-262 (278)
291 1nxk_A MAP kinase-activated pr 97.1 0.00017 5.7E-09 70.9 2.0 84 382-480 236-321 (400)
292 3bhy_A Death-associated protei 97.1 0.00018 6.1E-09 66.8 2.1 87 383-486 185-273 (283)
293 3a7i_A MST3 kinase, serine/thr 97.0 0.00013 4.3E-09 68.7 1.0 78 383-480 193-270 (303)
294 3fdn_A Serine/threonine-protei 97.0 0.00024 8.2E-09 65.8 2.9 77 383-480 181-257 (279)
295 2ycf_A Serine/threonine-protei 97.0 0.00016 5.3E-09 68.7 1.4 81 384-480 194-274 (322)
296 2x7f_A TRAF2 and NCK-interacti 97.0 0.00027 9.2E-09 67.1 2.8 79 383-480 208-286 (326)
297 1z57_A Dual specificity protei 97.0 0.00027 9.1E-09 67.4 2.7 96 383-480 208-328 (339)
298 4fie_A Serine/threonine-protei 97.0 0.00021 7.1E-09 70.1 1.9 79 384-480 322-400 (423)
299 2eue_A Carbon catabolite derep 97.0 0.00017 6E-09 66.6 1.2 73 387-480 190-262 (275)
300 2pml_X PFPK7, Ser/Thr protein 97.0 0.00051 1.8E-08 65.8 4.5 88 389-480 232-322 (348)
301 3kk8_A Calcium/calmodulin depe 97.0 0.0002 6.7E-09 66.6 1.5 81 383-480 181-261 (284)
302 1tki_A Titin; serine kinase, m 97.0 0.00018 6.2E-09 68.4 1.2 81 383-480 177-257 (321)
303 2eu9_A Dual specificity protei 97.0 0.00029 9.9E-09 67.7 2.6 29 382-410 212-240 (355)
304 3q60_A ROP5B; pseudokinase, tr 97.0 0.00013 4.6E-09 70.8 0.3 85 384-480 268-352 (371)
305 2wei_A Calmodulin-domain prote 96.9 0.0003 1E-08 65.5 2.6 79 385-480 198-276 (287)
306 1q8y_A SR protein kinase; tran 96.9 0.00028 9.4E-09 68.4 2.4 29 452-480 305-333 (373)
307 2vgo_A Serine/threonine-protei 96.9 0.00082 2.8E-08 62.3 5.6 78 382-480 185-262 (284)
308 3dzo_A Rhoptry kinase domain; 96.9 0.00032 1.1E-08 69.2 2.7 73 382-479 290-362 (413)
309 2y0a_A Death-associated protei 96.9 0.00026 8.9E-09 67.4 1.8 81 383-480 191-271 (326)
310 3lm5_A Serine/threonine-protei 96.9 0.00022 7.4E-09 68.0 1.2 81 383-480 207-287 (327)
311 3e3p_A Protein kinase, putativ 96.9 0.00029 9.8E-09 68.0 2.1 94 386-480 209-314 (360)
312 3nsz_A CK II alpha, casein kin 96.9 0.0001 3.5E-09 70.3 -1.2 97 384-480 206-319 (330)
313 3eqc_A Dual specificity mitoge 96.9 0.00021 7.2E-09 69.0 1.0 29 383-411 204-232 (360)
314 2x4f_A Myosin light chain kina 96.9 0.00036 1.2E-08 67.8 2.6 81 383-480 262-342 (373)
315 3f3z_A Calcium/calmodulin-depe 96.9 0.00025 8.7E-09 65.6 1.4 79 385-480 183-261 (277)
316 2wtk_C Serine/threonine-protei 96.9 0.00029 1E-08 66.1 1.9 74 386-480 190-263 (305)
317 3i6u_A CDS1, serine/threonine- 96.9 0.00022 7.5E-09 70.5 0.8 80 385-480 320-399 (419)
318 2a2a_A Death-associated protei 96.8 0.00041 1.4E-08 65.8 2.7 81 383-480 192-272 (321)
319 3g33_A Cell division protein k 96.8 0.00025 8.6E-09 66.8 1.1 95 384-480 194-296 (308)
320 3zgw_A Maternal embryonic leuc 96.8 0.0003 1E-08 67.6 1.7 74 386-480 187-260 (347)
321 2vx3_A Dual specificity tyrosi 96.8 0.00028 9.7E-09 68.8 1.5 32 379-410 228-259 (382)
322 1x8b_A WEE1HU, WEE1-like prote 96.8 0.00016 5.5E-09 67.1 -0.2 72 386-480 208-279 (289)
323 3o0g_A Cell division protein k 96.8 0.00042 1.4E-08 64.7 2.5 91 386-480 179-282 (292)
324 2ac3_A MAP kinase-interacting 96.8 0.00037 1.3E-08 65.8 1.9 84 385-480 202-295 (316)
325 2h6d_A 5'-AMP-activated protei 96.8 0.00034 1.2E-08 64.6 1.5 73 387-480 189-261 (276)
326 4agu_A Cyclin-dependent kinase 96.8 0.00023 7.9E-09 67.1 0.2 91 385-480 179-284 (311)
327 1kob_A Twitchin; kinase, intra 96.8 0.00042 1.4E-08 67.6 2.1 81 383-480 224-304 (387)
328 3niz_A Rhodanese family protei 96.8 0.00026 8.9E-09 66.9 0.6 94 385-480 196-300 (311)
329 3p23_A Serine/threonine-protei 96.7 0.00059 2E-08 67.7 3.0 78 384-479 204-282 (432)
330 2y7j_A Phosphorylase B kinase 96.7 0.00061 2.1E-08 65.9 3.0 79 385-480 281-359 (365)
331 2rku_A Serine/threonine-protei 96.7 0.00029 9.8E-09 65.9 0.6 77 383-480 189-265 (294)
332 1blx_A Cyclin-dependent kinase 96.7 0.00046 1.6E-08 65.5 2.0 96 383-480 193-296 (326)
333 3a99_A Proto-oncogene serine/t 96.7 0.00043 1.5E-08 65.6 1.5 67 387-480 227-293 (320)
334 3dls_A PAS domain-containing s 96.7 0.00032 1.1E-08 67.0 0.6 67 387-480 208-274 (335)
335 3c0i_A Peripheral plasma membr 96.7 0.00013 4.6E-09 70.2 -2.1 80 383-480 207-286 (351)
336 3fe3_A MAP/microtubule affinit 96.7 0.00038 1.3E-08 66.3 1.1 73 387-480 192-264 (328)
337 3ork_A Serine/threonine protei 96.7 0.00032 1.1E-08 66.2 0.5 79 384-479 194-272 (311)
338 1phk_A Phosphorylase kinase; g 96.7 0.00051 1.7E-08 64.2 1.8 81 383-480 203-283 (298)
339 3kn6_A Ribosomal protein S6 ki 96.7 0.00018 6.2E-09 68.5 -1.4 84 384-479 184-269 (325)
340 3h4j_B AMPK kdaid, SNF1-like p 96.7 0.00047 1.6E-08 65.9 1.5 73 387-480 186-258 (336)
341 3gni_B Strad alpha; kinase fol 96.7 0.00025 8.7E-09 69.3 -0.4 28 384-411 212-239 (389)
342 2i6l_A Mitogen-activated prote 96.6 0.00026 8.9E-09 66.9 -0.4 94 385-480 201-305 (320)
343 2bdw_A Hypothetical protein K1 96.6 0.00061 2.1E-08 65.8 2.0 80 384-480 205-284 (362)
344 3uc3_A Serine/threonine-protei 96.6 0.00076 2.6E-08 65.2 2.7 77 389-480 198-274 (361)
345 4aaa_A Cyclin-dependent kinase 96.6 0.0003 1E-08 67.1 -0.2 91 385-480 201-306 (331)
346 3ubd_A Ribosomal protein S6 ki 96.6 0.00074 2.5E-08 63.3 2.4 70 385-475 202-271 (304)
347 2xrw_A Mitogen-activated prote 96.6 0.001 3.5E-08 64.5 3.4 27 454-480 292-318 (371)
348 3mtl_A Cell division protein k 96.6 0.00035 1.2E-08 66.4 0.1 94 385-480 177-281 (324)
349 4g31_A Eukaryotic translation 96.6 0.00035 1.2E-08 65.5 -0.1 75 384-480 205-279 (299)
350 3kvw_A DYRK2, dual specificity 96.6 0.00025 8.7E-09 70.3 -1.1 28 383-410 273-300 (429)
351 3qa8_A MGC80376 protein; kinas 96.6 0.00061 2.1E-08 70.8 1.7 99 383-485 197-307 (676)
352 2jam_A Calcium/calmodulin-depe 96.6 0.00065 2.2E-08 63.8 1.7 80 384-480 182-261 (304)
353 3gbz_A Kinase, CMGC CDK; ssgci 96.6 0.00055 1.9E-08 65.2 1.2 94 386-480 215-318 (329)
354 3soa_A Calcium/calmodulin-depe 96.5 0.00096 3.3E-08 66.4 2.9 81 383-480 187-267 (444)
355 1ob3_A PFPK5, cell division co 96.5 0.00051 1.7E-08 64.0 0.7 95 385-480 177-280 (288)
356 2pmi_A Negative RE, cyclin-dep 96.5 0.00051 1.7E-08 65.0 0.4 94 385-480 185-293 (317)
357 3qd2_B Eukaryotic translation 96.4 0.00037 1.3E-08 66.2 -0.9 75 384-480 251-325 (332)
358 3eb0_A Putative uncharacterize 96.4 0.00076 2.6E-08 65.7 1.4 90 386-479 219-320 (383)
359 1vzo_A Ribosomal protein S6 ki 96.4 0.0011 3.7E-08 63.9 2.3 78 386-480 239-321 (355)
360 4exu_A Mitogen-activated prote 96.4 0.00021 7.4E-09 69.3 -2.7 92 384-480 217-323 (371)
361 1j1b_A Glycogen synthase kinas 96.4 0.00083 2.8E-08 66.4 1.4 93 385-480 233-336 (420)
362 2iwi_A Serine/threonine-protei 96.4 0.00086 2.9E-08 63.2 1.5 66 388-480 218-283 (312)
363 4e7w_A Glycogen synthase kinas 96.4 0.00087 3E-08 65.6 1.5 95 385-480 218-321 (394)
364 2r3i_A Cell division protein k 96.4 0.00078 2.7E-08 62.9 1.1 91 386-480 181-283 (299)
365 3coi_A Mitogen-activated prote 96.4 0.00038 1.3E-08 67.0 -1.1 92 384-480 199-305 (353)
366 3ttj_A Mitogen-activated prote 96.4 0.0015 5.1E-08 65.4 3.1 27 384-410 238-264 (464)
367 2owb_A Serine/threonine-protei 96.3 0.00074 2.5E-08 64.5 0.7 75 385-480 217-291 (335)
368 3pg1_A Mitogen-activated prote 96.3 0.0004 1.4E-08 67.1 -1.3 92 384-480 209-316 (362)
369 3nyv_A Calmodulin-domain prote 96.3 0.0013 4.5E-08 66.2 2.4 79 385-480 203-281 (484)
370 2yab_A Death-associated protei 96.3 0.0011 3.9E-08 63.9 1.9 80 384-480 193-272 (361)
371 2qr7_A Ribosomal protein S6 ki 96.3 0.001 3.5E-08 63.7 1.4 81 386-480 197-277 (342)
372 3qyz_A Mitogen-activated prote 96.3 0.0011 3.7E-08 64.1 1.6 93 386-480 209-313 (364)
373 3mi9_A Cell division protein k 96.3 0.00065 2.2E-08 65.3 -0.2 93 386-480 206-311 (351)
374 2b9h_A MAP kinase FUS3, mitoge 96.2 0.0009 3.1E-08 64.2 0.6 95 384-480 198-305 (353)
375 3mwu_A Calmodulin-domain prote 96.2 0.0018 6.1E-08 65.3 2.8 79 385-480 198-276 (486)
376 3lij_A Calcium/calmodulin depe 96.2 0.0019 6.4E-08 65.3 2.8 79 385-480 213-291 (494)
377 3rgf_A Cyclin-dependent kinase 96.2 0.0017 5.8E-08 63.8 2.4 25 386-410 213-237 (405)
378 3q5i_A Protein kinase; CDPK, m 96.2 0.0013 4.6E-08 66.5 1.5 79 385-480 223-301 (504)
379 1cm8_A Phosphorylated MAP kina 96.1 0.00077 2.6E-08 65.3 -0.5 91 385-480 202-307 (367)
380 2y94_A 5'-AMP-activated protei 96.1 0.0013 4.5E-08 65.9 1.2 73 387-480 194-266 (476)
381 4aw0_A HPDK1, 3-phosphoinositi 96.1 0.0012 4E-08 62.0 0.5 73 386-479 211-283 (311)
382 4f9c_A Cell division cycle 7-r 96.0 0.0021 7.3E-08 61.9 2.1 24 386-409 224-247 (361)
383 1zy4_A Serine/threonine-protei 96.0 0.0017 5.7E-08 60.6 1.2 77 385-480 207-283 (303)
384 1o6l_A RAC-beta serine/threoni 96.0 0.0038 1.3E-07 59.5 3.5 76 383-479 179-259 (337)
385 3oz6_A Mitogen-activated prote 95.9 0.0017 5.8E-08 63.3 1.0 27 384-410 206-232 (388)
386 1ua2_A CAK, cell division prot 95.9 0.0014 4.8E-08 62.8 0.1 91 386-480 190-291 (346)
387 3n9x_A Phosphotransferase; mal 95.9 0.00089 3E-08 66.4 -1.4 25 456-480 337-361 (432)
388 3rfe_A Platelet glycoprotein I 95.9 0.012 4E-07 47.4 5.5 35 154-188 33-67 (130)
389 4ejn_A RAC-alpha serine/threon 95.8 0.0024 8.1E-08 63.6 1.4 77 383-480 323-404 (446)
390 2fst_X Mitogen-activated prote 95.8 0.0015 5.2E-08 63.2 -0.1 94 385-480 206-311 (367)
391 4fr4_A YANK1, serine/threonine 95.7 0.0045 1.6E-07 60.2 3.1 76 385-478 193-269 (384)
392 3a62_A Ribosomal protein S6 ki 95.7 0.0039 1.3E-07 59.2 2.5 75 384-479 196-275 (327)
393 3uto_A Twitchin; kinase, muscl 95.6 0.0044 1.5E-07 63.7 2.7 80 384-480 331-410 (573)
394 4b99_A Mitogen-activated prote 95.6 0.0022 7.6E-08 62.6 0.4 25 386-410 240-264 (398)
395 3e7e_A HBUB1, BUB1A, mitotic c 95.6 0.0049 1.7E-07 59.4 2.7 80 382-486 258-338 (365)
396 3rfe_A Platelet glycoprotein I 95.6 0.027 9.1E-07 45.3 6.6 56 156-213 12-68 (130)
397 1rdq_E PKA C-alpha, CAMP-depen 95.5 0.0042 1.4E-07 59.6 1.9 75 384-479 213-292 (350)
398 3rp9_A Mitogen-activated prote 95.5 0.0025 8.6E-08 63.6 0.4 26 455-480 371-396 (458)
399 2r5t_A Serine/threonine-protei 95.5 0.0038 1.3E-07 60.4 1.6 77 385-482 215-291 (373)
400 1fot_A TPK1 delta, CAMP-depend 95.2 0.0076 2.6E-07 56.9 2.6 75 384-479 178-257 (318)
401 2i0e_A Protein kinase C-beta I 95.1 0.0084 2.9E-07 57.5 2.6 72 383-475 195-266 (353)
402 3txo_A PKC-L, NPKC-ETA, protei 95.0 0.0071 2.4E-07 58.0 1.7 69 386-475 201-269 (353)
403 1xjd_A Protein kinase C, theta 94.9 0.0036 1.2E-07 59.9 -0.6 75 383-478 192-267 (345)
404 4dc2_A Protein kinase C IOTA t 94.9 0.0068 2.3E-07 59.1 1.3 78 383-475 227-307 (396)
405 3c4z_A Rhodopsin kinase; Ser/T 94.8 0.0084 2.9E-07 61.0 1.7 77 383-476 363-439 (543)
406 3v8s_A RHO-associated protein 94.7 0.0061 2.1E-07 59.8 0.4 77 386-480 250-329 (410)
407 2pzi_A Probable serine/threoni 94.7 0.012 4.2E-07 61.8 2.7 73 387-486 254-327 (681)
408 3pfq_A PKC-B, PKC-beta, protei 94.6 0.011 3.7E-07 62.1 2.1 76 379-475 512-587 (674)
409 2acx_A G protein-coupled recep 94.6 0.012 4E-07 60.3 2.0 80 383-479 359-443 (576)
410 3a8x_A Protein kinase C IOTA t 94.6 0.011 3.8E-07 56.5 1.8 77 384-475 185-264 (345)
411 4aw2_A Serine/threonine-protei 94.2 0.014 4.9E-07 57.6 1.8 27 384-410 256-282 (437)
412 2vd5_A DMPK protein; serine/th 93.5 0.022 7.5E-07 55.9 1.6 27 384-410 245-271 (412)
413 3v5w_A G-protein coupled recep 92.6 0.039 1.3E-06 57.1 1.8 72 386-475 368-439 (689)
414 2lz0_A Uncharacterized protein 52.8 18 0.00062 26.9 4.5 46 66-112 7-52 (100)
415 2lz0_A Uncharacterized protein 45.3 47 0.0016 24.5 5.7 38 146-184 14-51 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.5e-47 Score=411.11 Aligned_cols=349 Identities=30% Similarity=0.464 Sum_probs=238.9
Q ss_pred cCCCCChHHHHHHHHHHhhCCCCCCccccCCCCCCCCCCccceeeeCCCCCCeEEEEcCCCCCccc---Cch--------
Q 011044 5 ANTTSITTDQQALLVLKAHVTDDPTNFLAKNWNTSSSFCYWTGVTCDVRSHRVAALNISGLNLTGT---IPS-------- 73 (495)
Q Consensus 5 ~~~~~~~~~~~~ll~~~~~~~~~~~~~l~~~w~~~~~~c~w~gv~c~~~~~~l~~L~L~~~~l~~~---~~~-------- 73 (495)
+++.+.++|++||++||+++. ||. .++ +|+.+.++|.|.||+|+ .++|+.|+|+++.+.|. +++
T Consensus 5 ~~~~~~~~~~~all~~k~~~~-~~~-~l~-~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L 79 (768)
T 3rgz_A 5 SPSQSLYREIHQLISFKDVLP-DKN-LLP-DWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGL 79 (768)
T ss_dssp ---CCHHHHHHHHHHHHTTCS-CTT-SST-TCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTC
T ss_pred ccccCCHHHHHHHHHHHhhCC-Ccc-ccc-CCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcc
Confidence 334447789999999999994 887 777 99988899999999998 37999999999999887 554
Q ss_pred ---------------hccCCCCCCEEeCcCCcCCccCCc--cccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcc
Q 011044 74 ---------------ELANLSSLQALDLSFNWFYGSIPS--SIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLK 136 (495)
Q Consensus 74 ---------------~l~~l~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~ 136 (495)
.++++++|++|+|++|.+.+.+|. .+.++++|++|++++|.+.+.+|..+...+++|++|+++
T Consensus 80 ~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls 159 (768)
T 3rgz_A 80 ESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS 159 (768)
T ss_dssp CEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECC
T ss_pred cccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECC
Confidence 455566666666666666666665 666666666666666666666665553446666666666
Q ss_pred cccCCccCCcc---cCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCC
Q 011044 137 YNMFHGKIPST---LSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLT 213 (495)
Q Consensus 137 ~n~l~~~~~~~---l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 213 (495)
+|.+++..+.. +.++++|++|++++|.+.+..+ +..+++|++|++++|.+.+.+|. ++++++|++|++++|.++
T Consensus 160 ~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~ 236 (768)
T 3rgz_A 160 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLS 236 (768)
T ss_dssp SSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCC
T ss_pred CCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCC
Confidence 66666555544 5556666666666665554433 25667777777777777766665 777777777777777777
Q ss_pred CcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeecccccc
Q 011044 214 GTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEI 293 (495)
Q Consensus 214 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 293 (495)
+.+|..+..+++|++|++++|.+.+.+|.. .+++|++|++++|.+++.+|..++..+++|++|++++|.+++.+|..+
T Consensus 237 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~ 314 (768)
T 3rgz_A 237 GDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 314 (768)
T ss_dssp SCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGG
T ss_pred CcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHH
Confidence 777777777777777777777776655543 566677777777766666666655334677777777777766666667
Q ss_pred cCCCCCCeeecccccccccCCcc-ccCCCcCCEEeCcCCcccccCCcCccCCC-CCcEEEccCCcCceecCC
Q 011044 294 GNLTKLTDLYLDQNKLQGKIPHE-IGNLRKLEWLMLSHNKLVGVVPAPIFNLS-TLISLQLHNNSLSGSLPS 363 (495)
Q Consensus 294 ~~l~~L~~L~L~~n~i~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~ 363 (495)
..+++|++|++++|.+.+.+|.. +..+++|++|++++|++.+.+|..+..++ +|+.|++++|.+.+.+|.
T Consensus 315 ~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~ 386 (768)
T 3rgz_A 315 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP 386 (768)
T ss_dssp GGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCT
T ss_pred hcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcCh
Confidence 77777777777777766655544 66666677777776666666666655554 555555555555554444
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=9.5e-45 Score=382.51 Aligned_cols=365 Identities=21% Similarity=0.311 Sum_probs=296.5
Q ss_pred ChHHHHHHHHHHhhCCCCCCccccC-------CCCCCCCCCcc---ceeeeCCCCCCeEEEEcCCCCCcccCchhccCCC
Q 011044 10 ITTDQQALLVLKAHVTDDPTNFLAK-------NWNTSSSFCYW---TGVTCDVRSHRVAALNISGLNLTGTIPSELANLS 79 (495)
Q Consensus 10 ~~~~~~~ll~~~~~~~~~~~~~l~~-------~w~~~~~~c~w---~gv~c~~~~~~l~~L~L~~~~l~~~~~~~l~~l~ 79 (495)
...|+.||.+++.++. .+.+.... +|+.+.++|.| .||+|+.. ++|+.|+|++++++|.+|+.+++++
T Consensus 28 ~~~d~~aL~~~~~~~~-~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L~ 105 (636)
T 4eco_A 28 YIKDYLALKEIWDALN-GKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQLT 105 (636)
T ss_dssp HHHHHHHHHHHHHHTT-GGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGGCT
T ss_pred HHHHHHHHHHHHHHcC-CCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhcCc
Confidence 4469999999999984 44333222 79988899999 99999864 7999999999999999999999999
Q ss_pred CCCEEeCcCCc---------------------------------------------------------------------
Q 011044 80 SLQALDLSFNW--------------------------------------------------------------------- 90 (495)
Q Consensus 80 ~L~~L~L~~n~--------------------------------------------------------------------- 90 (495)
+|++|+|++|.
T Consensus 106 ~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~ 185 (636)
T 4eco_A 106 ELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKD 185 (636)
T ss_dssp TCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCT
T ss_pred cceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhh
Confidence 99999999884
Q ss_pred ---------CCccCCccccCCCCCcEEEccCCccccc-----------------CChhHh--hcCCCCCEEEcccccCCc
Q 011044 91 ---------FYGSIPSSIFNMSSLLSIYFNNNTLFGE-----------------LPPNFC--NQMSNLESLFLKYNMFHG 142 (495)
Q Consensus 91 ---------l~~~~~~~l~~l~~L~~L~l~~n~~~~~-----------------~p~~~~--~~l~~L~~L~l~~n~l~~ 142 (495)
+++ +|..++++++|++|++++|.+.+. +|..+. . +++|++|++++|.+.+
T Consensus 186 l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~-l~~L~~L~L~~n~l~~ 263 (636)
T 4eco_A 186 TQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDN-LKDLTDVEVYNCPNLT 263 (636)
T ss_dssp TTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGG-CTTCCEEEEECCTTCS
T ss_pred hhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcc-cCCCCEEEecCCcCCc
Confidence 334 788899999999999999999885 888877 6 9999999999999999
Q ss_pred cCCcccCCCCCCCEEEcccCc-Ccc-ccCccccCC------CCCCEEEccCCCCCCCCCh--hhhCcccccEEEecCCcC
Q 011044 143 KIPSTLSSCKQLRELSLSSNY-FSG-TIPKEIGNL------TKLTRLNLRQNKLQGEIPE--ELGNLAELEMLWLQNNSL 212 (495)
Q Consensus 143 ~~~~~l~~l~~L~~L~l~~n~-l~~-~~~~~l~~l------~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~l~~n~l 212 (495)
.+|..++++++|++|++++|. +++ .+|..++.+ ++|++|++++|.++ .+|. .++++++|++|++++|.+
T Consensus 264 ~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l 342 (636)
T 4eco_A 264 KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQL 342 (636)
T ss_dssp SCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCC
T ss_pred cChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcC
Confidence 999999999999999999998 998 889888876 89999999999999 8888 899999999999999999
Q ss_pred CCcCchhhhcCCCCceeeCCCCcCCCCCCcccccccc-cceeeccCcccccccchhhhh-CCccccccccccceeeeccc
Q 011044 213 TGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSS-LQKLYLSDNQLSGELPANIGN-NLPSLQTLSLYVNDFSGAIP 290 (495)
Q Consensus 213 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~-L~~L~l~~n~l~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~ 290 (495)
+|.+| .+..+++|++|++++|.++ .+|..+..+++ |+.|++++|.++ .+|..+.. .+++|+.|++++|.+.+..|
T Consensus 343 ~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p 419 (636)
T 4eco_A 343 EGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDG 419 (636)
T ss_dssp EEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTT
T ss_pred ccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcch
Confidence 98888 8888899999999999888 66777888888 999999999888 67765431 13478888888888877777
Q ss_pred cccc-------CCCCCCeeecccccccccCCccccCCCcCCEEeCcCCcccccCCcCc-cCC-------CCCcEEEccCC
Q 011044 291 KEIG-------NLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPI-FNL-------STLISLQLHNN 355 (495)
Q Consensus 291 ~~l~-------~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~-~~l-------~~L~~L~l~~n 355 (495)
..+. .+++|+.|++++|.+++..+..+..+++|++|++++|++. .+|..+ ... ++|+.|++++|
T Consensus 420 ~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N 498 (636)
T 4eco_A 420 KNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFN 498 (636)
T ss_dssp CSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSS
T ss_pred hhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCC
Confidence 7666 6677888888888777433333455777777777777777 344332 222 27777777777
Q ss_pred cCceecCCCCC-CCCCChhhhhhhhcCCCc
Q 011044 356 SLSGSLPSSAD-VPLPNLEELFLWEYGREG 384 (495)
Q Consensus 356 ~l~~~~~~~~~-~~l~~L~~L~l~~~~~~~ 384 (495)
++. .+|.... ..+++|+.|++.+|...+
T Consensus 499 ~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~ 527 (636)
T 4eco_A 499 KLT-KLSDDFRATTLPYLVGIDLSYNSFSK 527 (636)
T ss_dssp CCC-BCCGGGSTTTCTTCCEEECCSSCCSS
T ss_pred cCC-ccChhhhhccCCCcCEEECCCCCCCC
Confidence 776 5665543 356777777777776654
No 3
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=5.3e-43 Score=375.76 Aligned_cols=355 Identities=22% Similarity=0.335 Sum_probs=256.3
Q ss_pred CCCChHHHHHHHHHHhhCCCCCCccccCCCCCCC-----CC--Ccc------------ceeeeCCCCCCeEEEEcCCCCC
Q 011044 7 TTSITTDQQALLVLKAHVTDDPTNFLAKNWNTSS-----SF--CYW------------TGVTCDVRSHRVAALNISGLNL 67 (495)
Q Consensus 7 ~~~~~~~~~~ll~~~~~~~~~~~~~l~~~w~~~~-----~~--c~w------------~gv~c~~~~~~l~~L~L~~~~l 67 (495)
++...+|+.||++||+++ ++| +|+.+. ++ |.| .||+|+. ..+|+.|+|+++++
T Consensus 264 ~~~~~~d~~ALl~~k~~l-~~~------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L 335 (876)
T 4ecn_A 264 TAEYIKDYKALKAIWEAL-DGK------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGA 335 (876)
T ss_dssp CCHHHHHHHHHHHHHHHT-TGG------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCC
T ss_pred cccchHHHHHHHHHHHHc-CCC------CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCC
Confidence 344567999999999999 566 565443 44 999 9999986 47999999999999
Q ss_pred cccCchhccCCCCCCEEeC-cCCcCCcc----------------------------------------------------
Q 011044 68 TGTIPSELANLSSLQALDL-SFNWFYGS---------------------------------------------------- 94 (495)
Q Consensus 68 ~~~~~~~l~~l~~L~~L~L-~~n~l~~~---------------------------------------------------- 94 (495)
.|.+|+.|++|++|++|+| ++|.+.|.
T Consensus 336 ~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~ 415 (876)
T 4ecn_A 336 KGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMK 415 (876)
T ss_dssp EEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSC
T ss_pred CCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccc
Confidence 9999999999999999999 77754433
Q ss_pred ------------------------CCccccCCCCCcEEEccCCcccc-----------------cCChhHh-hcCCCCCE
Q 011044 95 ------------------------IPSSIFNMSSLLSIYFNNNTLFG-----------------ELPPNFC-NQMSNLES 132 (495)
Q Consensus 95 ------------------------~~~~l~~l~~L~~L~l~~n~~~~-----------------~~p~~~~-~~l~~L~~ 132 (495)
+|..+.++++|++|++++|.+++ .+|..+. ..+++|++
T Consensus 416 ~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~ 495 (876)
T 4ecn_A 416 PIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTD 495 (876)
T ss_dssp CCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCE
T ss_pred ccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCE
Confidence 78889999999999999999988 3888874 34999999
Q ss_pred EEcccccCCccCCcccCCCCCCCEEEcccCc-Ccc-ccCccccCCC-------CCCEEEccCCCCCCCCCh--hhhCccc
Q 011044 133 LFLKYNMFHGKIPSTLSSCKQLRELSLSSNY-FSG-TIPKEIGNLT-------KLTRLNLRQNKLQGEIPE--ELGNLAE 201 (495)
Q Consensus 133 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~-~~~~~l~~l~-------~L~~L~L~~n~l~~~~~~--~l~~l~~ 201 (495)
|++++|.+.+.+|..++++++|++|++++|. +++ .+|..++.++ +|++|++++|.++ .+|. .++++++
T Consensus 496 L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~ 574 (876)
T 4ecn_A 496 VELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVK 574 (876)
T ss_dssp EEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTT
T ss_pred EECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCC
Confidence 9999999999999999999999999999998 887 7777665554 8888888888887 7777 7888888
Q ss_pred ccEEEecCCcCCCcCchhhhcCCCCceeeCCCCcCCCCCCcccccccc-cceeeccCcccccccchhhhh----------
Q 011044 202 LEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSS-LQKLYLSDNQLSGELPANIGN---------- 270 (495)
Q Consensus 202 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~-L~~L~l~~n~l~~~~~~~~~~---------- 270 (495)
|+.|++++|.++ .+| .+..+++|+.|++++|.+. .+|..+..+++ |+.|++++|.++ .+|..+..
T Consensus 575 L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~ 650 (876)
T 4ecn_A 575 LGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVD 650 (876)
T ss_dssp CCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEE
T ss_pred CCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEE
Confidence 888888888777 666 6677777777777777766 55555666666 666666666554 33322110
Q ss_pred --------------------CCccccccccccceeeeccccc-ccCCCCCCeeecccccccccCCccccC--------CC
Q 011044 271 --------------------NLPSLQTLSLYVNDFSGAIPKE-IGNLTKLTDLYLDQNKLQGKIPHEIGN--------LR 321 (495)
Q Consensus 271 --------------------~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~i~~~~~~~l~~--------l~ 321 (495)
..++|+.|++++|.++ .+|.. +..+++|+.|+|++|++. .+|..+.. ++
T Consensus 651 Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~ 728 (876)
T 4ecn_A 651 FSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTY 728 (876)
T ss_dssp CCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGG
T ss_pred CcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccC
Confidence 1124556666666555 33333 335666677777766666 34433221 22
Q ss_pred cCCEEeCcCCcccccCCcCcc--CCCCCcEEEccCCcCceecCCCCCCCCCChhhhhhhh
Q 011044 322 KLEWLMLSHNKLVGVVPAPIF--NLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFLWE 379 (495)
Q Consensus 322 ~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 379 (495)
+|+.|+|++|++. .+|..+. .+++|+.|++++|++.+ +|.... .+++|+.|++..
T Consensus 729 ~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~-~L~~L~~L~Ls~ 785 (876)
T 4ecn_A 729 LLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPL-NSSQLKAFGIRH 785 (876)
T ss_dssp GCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGG-GCTTCCEEECCC
T ss_pred CccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhh-cCCCCCEEECCC
Confidence 6666666666666 4555554 66666666666666664 454433 456666666644
No 4
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=7.9e-43 Score=336.04 Aligned_cols=294 Identities=32% Similarity=0.540 Sum_probs=217.7
Q ss_pred CCCChHHHHHHHHHHhhCCCCCCccccCCCCCCCCCCc--cceeeeCCCC--CCeEEEEcCCCCCcc--cCchhccCCCC
Q 011044 7 TTSITTDQQALLVLKAHVTDDPTNFLAKNWNTSSSFCY--WTGVTCDVRS--HRVAALNISGLNLTG--TIPSELANLSS 80 (495)
Q Consensus 7 ~~~~~~~~~~ll~~~~~~~~~~~~~l~~~w~~~~~~c~--w~gv~c~~~~--~~l~~L~L~~~~l~~--~~~~~l~~l~~ 80 (495)
+.|.++|++||++||+++ .+|. .+. +|..+.++|. |.||+|+... .+|++|+|+++.+++ .+|..++++++
T Consensus 1 ~~c~~~~~~aL~~~k~~~-~~~~-~l~-~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~ 77 (313)
T 1ogq_A 1 ELCNPQDKQALLQIKKDL-GNPT-TLS-SWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPY 77 (313)
T ss_dssp CCSCHHHHHHHHHHHHHT-TCCG-GGT-TCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTT
T ss_pred CCCCHHHHHHHHHHHHhc-CCcc-ccc-CCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCC
Confidence 358899999999999999 5776 666 9988888998 9999998643 689999999999999 89999999999
Q ss_pred CCEEeCcC-CcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCCEEEc
Q 011044 81 LQALDLSF-NWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSL 159 (495)
Q Consensus 81 L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 159 (495)
|++|++++ |.+.+.+|..+.++++|++|++++|.+.+.+|..+.. +++|++|++++|.+++.+|..+..+++|++|++
T Consensus 78 L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 156 (313)
T 1ogq_A 78 LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ-IKTLVTLDFSYNALSGTLPPSISSLPNLVGITF 156 (313)
T ss_dssp CSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGG-CTTCCEEECCSSEEESCCCGGGGGCTTCCEEEC
T ss_pred CCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhC-CCCCCEEeCCCCccCCcCChHHhcCCCCCeEEC
Confidence 99999995 8898889988999999999999999888788877766 888888888888888777888888888888888
Q ss_pred ccCcCccccCccccCCC-CCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCcCchhhhcCCCCceeeCCCCcCCC
Q 011044 160 SSNYFSGTIPKEIGNLT-KLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTG 238 (495)
Q Consensus 160 ~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 238 (495)
++|.+++.+|..+..++ +|++|++++|.+++.+|..+..++ |++|++++|.+++..+..+..+++|+.|++++|.+++
T Consensus 157 ~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 235 (313)
T 1ogq_A 157 DGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF 235 (313)
T ss_dssp CSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC
T ss_pred cCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceee
Confidence 88888777777777776 778888877777777777777665 7777777777766666666666666666666666655
Q ss_pred CCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeecccccccCCCCCCeeeccccc
Q 011044 239 IIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNK 308 (495)
Q Consensus 239 ~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 308 (495)
..+. +..+++|++|++++|.+++.+|..+. .+++|++|++++|.+++.+|.. ..+++|+.+++++|+
T Consensus 236 ~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 236 DLGK-VGLSKNLNGLDLRNNRIYGTLPQGLT-QLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp BGGG-CCCCTTCCEEECCSSCCEECCCGGGG-GCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred ecCc-ccccCCCCEEECcCCcccCcCChHHh-cCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 4443 44455555555555555544444433 3444444444444444444433 344444444444443
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.6e-41 Score=365.90 Aligned_cols=336 Identities=39% Similarity=0.589 Sum_probs=242.2
Q ss_pred CCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCcc-ccCCCCCcEEEccCCcccccCChhHhhc-------
Q 011044 55 HRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSS-IFNMSSLLSIYFNNNTLFGELPPNFCNQ------- 126 (495)
Q Consensus 55 ~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~n~~~~~~p~~~~~~------- 126 (495)
+++++|+|++|.+++.+|..++++++|++|++++|.+.+.+|.. +.++++|++|++++|.+.+.+|..+...
T Consensus 294 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L 373 (768)
T 3rgz_A 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTL 373 (768)
T ss_dssp TTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEE
T ss_pred CcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEE
Confidence 46677777777776666666777777777777777776666654 6666777777777776666666555441
Q ss_pred -------------------CCCCCEEEcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCC
Q 011044 127 -------------------MSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNK 187 (495)
Q Consensus 127 -------------------l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 187 (495)
+++|++|++++|.+++.+|..+.++++|++|++++|.+++.+|..++.+++|++|++++|.
T Consensus 374 ~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~ 453 (768)
T 3rgz_A 374 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 453 (768)
T ss_dssp ECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC
T ss_pred EccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCc
Confidence 2344444455555555556666666777777777777776677777777777777777777
Q ss_pred CCCCCChhhhCcccccEEEecCCcCCCcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchh
Q 011044 188 LQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPAN 267 (495)
Q Consensus 188 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~ 267 (495)
+.+.+|..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|..++.+++|+.|++++|.+++.+|..
T Consensus 454 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 533 (768)
T 3rgz_A 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE 533 (768)
T ss_dssp CCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGG
T ss_pred ccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777766
Q ss_pred hhhCCccccccccccceeeeccccc-------------------------------------------------------
Q 011044 268 IGNNLPSLQTLSLYVNDFSGAIPKE------------------------------------------------------- 292 (495)
Q Consensus 268 ~~~~l~~L~~L~L~~n~l~~~~~~~------------------------------------------------------- 292 (495)
+. .+++|+.|++++|.+++.+|..
T Consensus 534 l~-~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 612 (768)
T 3rgz_A 534 LG-DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNP 612 (768)
T ss_dssp GG-GCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCC
T ss_pred Hc-CCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccc
Confidence 65 6777777777777776555533
Q ss_pred ---------------ccCCCCCCeeecccccccccCCccccCCCcCCEEeCcCCcccccCCcCccCCCCCcEEEccCCcC
Q 011044 293 ---------------IGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSL 357 (495)
Q Consensus 293 ---------------l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 357 (495)
+..+++|+.|++++|++++.+|..++.++.|+.|++++|++++.+|..++.+++|+.|++++|++
T Consensus 613 ~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l 692 (768)
T 3rgz_A 613 CNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 692 (768)
T ss_dssp SCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred cccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcc
Confidence 23346677888888888888888888888888888888888888888888888888888888888
Q ss_pred ceecCCCCCCCCCChhhhhhhhcCCCccccCCCcc
Q 011044 358 SGSLPSSADVPLPNLEELFLWEYGREGRVSTNGDI 392 (495)
Q Consensus 358 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~dv 392 (495)
+|.+|.... .++.|++|+++.|...|.++..+..
T Consensus 693 ~g~ip~~l~-~l~~L~~L~ls~N~l~g~iP~~~~~ 726 (768)
T 3rgz_A 693 DGRIPQAMS-ALTMLTEIDLSNNNLSGPIPEMGQF 726 (768)
T ss_dssp EECCCGGGG-GCCCCSEEECCSSEEEEECCSSSSG
T ss_pred cCcCChHHh-CCCCCCEEECcCCcccccCCCchhh
Confidence 888877654 5778888888888877777765433
No 6
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=5.5e-39 Score=326.13 Aligned_cols=328 Identities=24% Similarity=0.257 Sum_probs=248.9
Q ss_pred CCCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccC-CccccCCCCCcEEEccCCcccccCChhHhhcCCCCCE
Q 011044 54 SHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSI-PSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLES 132 (495)
Q Consensus 54 ~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~ 132 (495)
++++++|+|++|.+++..|..|+++++|++|++++|.+.+.+ +..|.++++|++|++++|.+.+..|..+.. +++|++
T Consensus 29 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~ 107 (455)
T 3v47_A 29 PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNG-LANLEV 107 (455)
T ss_dssp CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTT-CTTCCE
T ss_pred CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccC-cccCCE
Confidence 368999999999999988999999999999999999997665 567999999999999999998777777766 999999
Q ss_pred EEcccccCCccCCcc--cCCCCCCCEEEcccCcCccccCcc-ccCCCCCCEEEccCCCCCCCCChhhhCc--ccccEEEe
Q 011044 133 LFLKYNMFHGKIPST--LSSCKQLRELSLSSNYFSGTIPKE-IGNLTKLTRLNLRQNKLQGEIPEELGNL--AELEMLWL 207 (495)
Q Consensus 133 L~l~~n~l~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l--~~L~~L~l 207 (495)
|++++|.+++..+.. +.++++|++|++++|.+++..|.. +..+++|++|++++|.+.+..+..+..+ .+|+.|++
T Consensus 108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l 187 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187 (455)
T ss_dssp EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEEC
T ss_pred EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccc
Confidence 999999998755554 899999999999999999887776 8899999999999999998888777766 56677777
Q ss_pred cCCcCCCcCchh--------hhcCCCCceeeCCCCcCCCCCCccccc---------------------------------
Q 011044 208 QNNSLTGTIPSS--------IFSLSSLLNLDLSLNNFTGIIPSSIGN--------------------------------- 246 (495)
Q Consensus 208 ~~n~l~~~~~~~--------l~~l~~L~~L~Ls~n~l~~~~~~~l~~--------------------------------- 246 (495)
++|.+.+..+.. +..+++|++|++++|.+.+..+..+..
T Consensus 188 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 267 (455)
T 3v47_A 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267 (455)
T ss_dssp TTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTT
T ss_pred ccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccc
Confidence 777666433322 224566777777777665433332221
Q ss_pred ------ccccceeeccCcccccccchhhhhCCccccccccccceeeecccccccCCCCCCeeecccccccccCCccccCC
Q 011044 247 ------LSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNL 320 (495)
Q Consensus 247 ------~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l 320 (495)
.++|+.|++++|.+.+..+..+. .+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..|..+
T Consensus 268 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 346 (455)
T 3v47_A 268 TFKGLEASGVKTCDLSKSKIFALLKSVFS-HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENL 346 (455)
T ss_dssp TTGGGTTSCCCEEECCSSCCCEECTTTTT-TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTC
T ss_pred ccccccccCceEEEecCccccccchhhcc-cCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCc
Confidence 24677777777777655555444 66777777777777776666677777777777777777766666667777
Q ss_pred CcCCEEeCcCCcccccCCcCccCCCCCcEEEccCCcCceecCCCCCCCCCChhhhhhhhcCCCc
Q 011044 321 RKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFLWEYGREG 384 (495)
Q Consensus 321 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~ 384 (495)
++|++|++++|++.+..|..+..+++|++|++++|++. .+|...+..+++|+.|++.+|...+
T Consensus 347 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 347 DKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccCCEEECCCCcccccChhhccccccccEEECCCCccc-cCCHhHhccCCcccEEEccCCCccc
Confidence 77777777777777766777777777777777777776 3455444566777777777666543
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.6e-36 Score=319.14 Aligned_cols=302 Identities=24% Similarity=0.237 Sum_probs=188.2
Q ss_pred CCCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEE
Q 011044 54 SHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESL 133 (495)
Q Consensus 54 ~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L 133 (495)
++.+++|+|++|.+++..|..|+++++|++|++++|.+.+..|..|.++++|++|++++|.+.+..|..+.. +++|++|
T Consensus 32 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L 110 (606)
T 3t6q_A 32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSG-PKALKHL 110 (606)
T ss_dssp CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSS-CTTCCEE
T ss_pred CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcc-cccccEe
Confidence 467899999999999888888999999999999999988888888999999999999999887666666655 8888888
Q ss_pred EcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCccccc--EEEecCCc
Q 011044 134 FLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELE--MLWLQNNS 211 (495)
Q Consensus 134 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~--~L~l~~n~ 211 (495)
++++|.+++..+..++++++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..++.+++|+ .|++++|.
T Consensus 111 ~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~ 190 (606)
T 3t6q_A 111 FFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND 190 (606)
T ss_dssp ECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCC
T ss_pred eccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCc
Confidence 8888888866567788888888888888888764333444577777777777777655555566666555 55555554
Q ss_pred CCCcC---------------------------------------------------------------------------
Q 011044 212 LTGTI--------------------------------------------------------------------------- 216 (495)
Q Consensus 212 l~~~~--------------------------------------------------------------------------- 216 (495)
+++..
T Consensus 191 l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~ 270 (606)
T 3t6q_A 191 IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNIS 270 (606)
T ss_dssp CCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCC
T ss_pred cCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccC
Confidence 43222
Q ss_pred chhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeecccc-cccC
Q 011044 217 PSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPK-EIGN 295 (495)
Q Consensus 217 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~ 295 (495)
+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..+..+. .+++|++|++++|.+.+.++. .+..
T Consensus 271 ~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~ 348 (606)
T 3t6q_A 271 SNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISAS-NFPSLTHLSIKGNTKRLELGTGCLEN 348 (606)
T ss_dssp TTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGG-GCTTCSEEECCSCSSCCBCCSSTTTT
T ss_pred HHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhh-ccCcCCEEECCCCCcccccchhhhhc
Confidence 222444555666666666555 3444455555566666665555533333332 444455555544444332222 2444
Q ss_pred CCCCCeeecccccccccC--CccccCCCcCCEEeCcCCcccccCCcCccCCCCCcEEEccCCcCc
Q 011044 296 LTKLTDLYLDQNKLQGKI--PHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLS 358 (495)
Q Consensus 296 l~~L~~L~L~~n~i~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 358 (495)
+++|++|++++|.+.+.. +..+..+++|++|++++|++.+..+..+..+++|+.|++++|.+.
T Consensus 349 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 413 (606)
T 3t6q_A 349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413 (606)
T ss_dssp CTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred cCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC
Confidence 444444444444444322 333444444444444444444444444444444444444444444
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2e-37 Score=326.62 Aligned_cols=323 Identities=23% Similarity=0.338 Sum_probs=283.8
Q ss_pred CCCeEEEEcCCCCCccc-----------------Cchhcc--CCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCc
Q 011044 54 SHRVAALNISGLNLTGT-----------------IPSELA--NLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNT 114 (495)
Q Consensus 54 ~~~l~~L~L~~~~l~~~-----------------~~~~l~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 114 (495)
.+++++|+|++|.+++. +|..++ ++++|++|++++|.+.+.+|..+.++++|++|++++|.
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 284 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR 284 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCT
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCC
Confidence 46899999999999996 899999 99999999999999999999999999999999999998
Q ss_pred -ccc-cCChhHhhcC------CCCCEEEcccccCCccCCc--ccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEcc
Q 011044 115 -LFG-ELPPNFCNQM------SNLESLFLKYNMFHGKIPS--TLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLR 184 (495)
Q Consensus 115 -~~~-~~p~~~~~~l------~~L~~L~l~~n~l~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 184 (495)
+++ .+|..+.. + ++|++|++++|.++ .+|. .++++++|++|++++|.++|.+| .++.+++|++|+++
T Consensus 285 ~l~~~~lp~~~~~-L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~ 361 (636)
T 4eco_A 285 GISGEQLKDDWQA-LADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLA 361 (636)
T ss_dssp TSCHHHHHHHHHH-HHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECC
T ss_pred CCccccchHHHHh-hhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECC
Confidence 888 89988876 5 99999999999999 8888 89999999999999999998999 89999999999999
Q ss_pred CCCCCCCCChhhhCccc-ccEEEecCCcCCCcCchhhhcCC--CCceeeCCCCcCCCCCCcccc-------cccccceee
Q 011044 185 QNKLQGEIPEELGNLAE-LEMLWLQNNSLTGTIPSSIFSLS--SLLNLDLSLNNFTGIIPSSIG-------NLSSLQKLY 254 (495)
Q Consensus 185 ~n~l~~~~~~~l~~l~~-L~~L~l~~n~l~~~~~~~l~~l~--~L~~L~Ls~n~l~~~~~~~l~-------~~~~L~~L~ 254 (495)
+|.++ .+|..+.++++ |++|++++|.++ .+|..+..++ +|++|++++|.+.+..|..+. .+++|+.|+
T Consensus 362 ~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~ 439 (636)
T 4eco_A 362 YNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSIN 439 (636)
T ss_dssp SSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEE
T ss_pred CCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEE
Confidence 99998 88888999999 999999999998 7788777655 899999999999998888887 778999999
Q ss_pred ccCcccccccchhhhhCCccccccccccceeeeccccc-ccCC-------CCCCeeecccccccccCCcccc--CCCcCC
Q 011044 255 LSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKE-IGNL-------TKLTDLYLDQNKLQGKIPHEIG--NLRKLE 324 (495)
Q Consensus 255 l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l-------~~L~~L~L~~n~i~~~~~~~l~--~l~~L~ 324 (495)
+++|.++ .+|..++..+++|++|++++|.++ .+|.. +... ++|+.|++++|+++ .+|..+. .+++|+
T Consensus 440 Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~ 516 (636)
T 4eco_A 440 LSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLV 516 (636)
T ss_dssp CCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCC
T ss_pred CcCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcC
Confidence 9999998 788777767899999999999988 44443 3322 28999999999998 6777776 899999
Q ss_pred EEeCcCCcccccCCcCccCCCCCcEEEc------cCCcCceecCCCCCCCCCChhhhhhhhcCCCcccc
Q 011044 325 WLMLSHNKLVGVVPAPIFNLSTLISLQL------HNNSLSGSLPSSADVPLPNLEELFLWEYGREGRVS 387 (495)
Q Consensus 325 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l------~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 387 (495)
+|++++|++.+ +|..+..+++|+.|++ ++|++.+.+|.... .+++|+.|++.+|.. +.++
T Consensus 517 ~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l-~~ip 582 (636)
T 4eco_A 517 GIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGIT-LCPSLTQLQIGSNDI-RKVN 582 (636)
T ss_dssp EEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGG-GCSSCCEEECCSSCC-CBCC
T ss_pred EEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHh-cCCCCCEEECCCCcC-CccC
Confidence 99999999987 7888889999999999 45777778877655 588999999988887 4443
No 9
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.1e-36 Score=309.02 Aligned_cols=313 Identities=21% Similarity=0.215 Sum_probs=281.2
Q ss_pred cceeeeCCC---------CCCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcc
Q 011044 45 WTGVTCDVR---------SHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTL 115 (495)
Q Consensus 45 w~gv~c~~~---------~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 115 (495)
|..+.|... +.+++.|+|++|.+++..+..|.++++|++|+|++|.+++..|..|.++++|++|++++|.+
T Consensus 13 ~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l 92 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92 (477)
T ss_dssp TTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC
Confidence 456666531 46899999999999998888999999999999999999988899999999999999999998
Q ss_pred cccCChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChh
Q 011044 116 FGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEE 195 (495)
Q Consensus 116 ~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 195 (495)
. .+|...+..+++|++|++++|.+.+..+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..
T Consensus 93 ~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 171 (477)
T 2id5_A 93 K-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEA 171 (477)
T ss_dssp C-SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHH
T ss_pred C-ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhH
Confidence 5 566665555999999999999999888889999999999999999999888889999999999999999999777778
Q ss_pred hhCcccccEEEecCCcCCCcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccc
Q 011044 196 LGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSL 275 (495)
Q Consensus 196 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L 275 (495)
+.++++|+.|++++|.+.+..+..+..+++|+.|++++|...+.++.......+|+.|++++|.++ .++...+..+++|
T Consensus 172 l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L 250 (477)
T 2id5_A 172 LSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYL 250 (477)
T ss_dssp HTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-SCCHHHHTTCTTC
T ss_pred hcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc-ccCHHHhcCcccc
Confidence 999999999999999999877788999999999999999887777766666679999999999998 6675555589999
Q ss_pred cccccccceeeecccccccCCCCCCeeecccccccccCCccccCCCcCCEEeCcCCcccccCCcCccCCCCCcEEEccCC
Q 011044 276 QTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNN 355 (495)
Q Consensus 276 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 355 (495)
+.|++++|.+++..+..+..+++|+.|++++|++.+..+..|..+++|++|++++|++++..+..|..+++|+.|++++|
T Consensus 251 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 251 RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN 330 (477)
T ss_dssp CEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSS
T ss_pred CeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCC
Confidence 99999999999888888999999999999999999888899999999999999999999877778889999999999999
Q ss_pred cCce
Q 011044 356 SLSG 359 (495)
Q Consensus 356 ~l~~ 359 (495)
++..
T Consensus 331 ~l~c 334 (477)
T 2id5_A 331 PLAC 334 (477)
T ss_dssp CEEC
T ss_pred CccC
Confidence 9863
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=5.5e-36 Score=315.15 Aligned_cols=327 Identities=21% Similarity=0.174 Sum_probs=212.4
Q ss_pred CCCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEE
Q 011044 54 SHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESL 133 (495)
Q Consensus 54 ~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L 133 (495)
++++++|+|++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++++|.+.+..|..+.. +++|++|
T Consensus 31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L 109 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSG-LTSLENL 109 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTT-CTTCCEE
T ss_pred CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCC-cccCCEE
Confidence 467888888888888777777888888888888888888777777888888888888888876665666655 8888888
Q ss_pred EcccccCCccCCcccCCCCCCCEEEcccCcCcc-ccCccccCCCCCCEEEccCCCCCCCCChhhhCcc------------
Q 011044 134 FLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSG-TIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLA------------ 200 (495)
Q Consensus 134 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~------------ 200 (495)
++++|.+++..+..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+++..+..++.++
T Consensus 110 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~ 189 (606)
T 3vq2_A 110 VAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMS 189 (606)
T ss_dssp ECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECT
T ss_pred EccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeecc
Confidence 888888776665677788888888888887765 4577777788888887777776644333222111
Q ss_pred --------------------------------------------------------------------------------
Q 011044 201 -------------------------------------------------------------------------------- 200 (495)
Q Consensus 201 -------------------------------------------------------------------------------- 200 (495)
T Consensus 190 ~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~ 269 (606)
T 3vq2_A 190 LNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT 269 (606)
T ss_dssp TCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEEC
T ss_pred CCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecc
Confidence
Q ss_pred --------------------------------------cccEEEecCCcC------------------------------
Q 011044 201 --------------------------------------ELEMLWLQNNSL------------------------------ 212 (495)
Q Consensus 201 --------------------------------------~L~~L~l~~n~l------------------------------ 212 (495)
+|++|++++|.+
T Consensus 270 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l 349 (606)
T 3vq2_A 270 YTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVAL 349 (606)
T ss_dssp CCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECCCCCC
T ss_pred ccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCcccccCCCCccceeeccCCcCccchhhccC
Confidence 122222222221
Q ss_pred -------------CCc--CchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccc
Q 011044 213 -------------TGT--IPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQT 277 (495)
Q Consensus 213 -------------~~~--~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 277 (495)
++. .+..+..+++|++|++++|.+.+ +|..+..+++|+.|++++|.+.+..+...+..+++|++
T Consensus 350 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 428 (606)
T 3vq2_A 350 PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLY 428 (606)
T ss_dssp TTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCE
T ss_pred CCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCE
Confidence 111 12233333334444444443332 22345555566666666666554444222335666777
Q ss_pred cccccceeeecccccccCCCCCCeeecccccccc-cCCccccCCCcCCEEeCcCCcccccCCcCccCCCCCcEEEccCCc
Q 011044 278 LSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQG-KIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNS 356 (495)
Q Consensus 278 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 356 (495)
|++++|.+.+..+..+..+++|+.|++++|.+.+ .+|..++.+++|++|++++|++.+..|..+..+++|+.|++++|+
T Consensus 429 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 508 (606)
T 3vq2_A 429 LDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN 508 (606)
T ss_dssp EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCc
Confidence 7777777666666667777777777777777765 356667777777777777777777667677777777777777777
Q ss_pred CceecCCCCCCCCCChhhhhhhhcCCC
Q 011044 357 LSGSLPSSADVPLPNLEELFLWEYGRE 383 (495)
Q Consensus 357 l~~~~~~~~~~~l~~L~~L~l~~~~~~ 383 (495)
+.+..|.... .+++|+.|++.+|...
T Consensus 509 l~~~~~~~~~-~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 509 LLFLDSSHYN-QLYSLSTLDCSFNRIE 534 (606)
T ss_dssp CSCEEGGGTT-TCTTCCEEECTTSCCC
T ss_pred CCCcCHHHcc-CCCcCCEEECCCCcCc
Confidence 7755554433 4677777777777655
No 11
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=7.5e-36 Score=304.87 Aligned_cols=323 Identities=22% Similarity=0.181 Sum_probs=288.6
Q ss_pred eEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcc
Q 011044 57 VAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLK 136 (495)
Q Consensus 57 l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~ 136 (495)
-+.++.++++++ .+|..+ .+++++|+|++|.+++..+..|.++++|++|++++|.+.+..|..+.. +++|++|+++
T Consensus 13 ~~~v~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~-l~~L~~L~L~ 88 (477)
T 2id5_A 13 DRAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNN-LFNLRTLGLR 88 (477)
T ss_dssp TTEEECCSCCCS-SCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT-CTTCCEEECC
T ss_pred CCEEEeCCCCcC-cCCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhC-CccCCEEECC
Confidence 357888898887 455544 368999999999999888899999999999999999997776777665 9999999999
Q ss_pred cccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCcC
Q 011044 137 YNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTI 216 (495)
Q Consensus 137 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 216 (495)
+|.++...+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..|.++++|+.|++++|.+++..
T Consensus 89 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 168 (477)
T 2id5_A 89 SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP 168 (477)
T ss_dssp SSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred CCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC
Confidence 99999666667899999999999999999888889999999999999999999888889999999999999999999777
Q ss_pred chhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeecccccccCC
Q 011044 217 PSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNL 296 (495)
Q Consensus 217 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 296 (495)
+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|...+.++...+ ...+|++|++++|.+++..+..+..+
T Consensus 169 ~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l 247 (477)
T 2id5_A 169 TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL-YGLNLTSLSITHCNLTAVPYLAVRHL 247 (477)
T ss_dssp HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTT-TTCCCSEEEEESSCCCSCCHHHHTTC
T ss_pred hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccc-cCccccEEECcCCcccccCHHHhcCc
Confidence 77899999999999999999988888899999999999999988778877766 45699999999999986555678999
Q ss_pred CCCCeeecccccccccCCccccCCCcCCEEeCcCCcccccCCcCccCCCCCcEEEccCCcCceecCCCCCCCCCChhhhh
Q 011044 297 TKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELF 376 (495)
Q Consensus 297 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 376 (495)
++|+.|++++|.+++..+..|..+++|++|++++|++.+..+..+..+++|+.|++++|.+. .++...+..+++|+.|+
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~ 326 (477)
T 2id5_A 248 VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLI 326 (477)
T ss_dssp TTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCS-CCCGGGBSCGGGCCEEE
T ss_pred cccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCc-eeCHhHcCCCcccCEEE
Confidence 99999999999999888888999999999999999999999999999999999999999998 56666666789999999
Q ss_pred hhhcCCCcc
Q 011044 377 LWEYGREGR 385 (495)
Q Consensus 377 l~~~~~~~~ 385 (495)
+.+|...+.
T Consensus 327 l~~N~l~c~ 335 (477)
T 2id5_A 327 LDSNPLACD 335 (477)
T ss_dssp CCSSCEECS
T ss_pred ccCCCccCc
Confidence 988876543
No 12
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.1e-35 Score=306.95 Aligned_cols=315 Identities=23% Similarity=0.258 Sum_probs=214.5
Q ss_pred CCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEE
Q 011044 55 HRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLF 134 (495)
Q Consensus 55 ~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~ 134 (495)
+++++|+|++|.+++..|..|.++++|++|++++|.+++..|..|.++++|++|++++|.+. .+|.. .+++|++|+
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L~ 96 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH---PTVNLKHLD 96 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC---CCCCCSEEE
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc---ccCCccEEe
Confidence 68999999999999888888999999999999999999888888999999999999999986 67666 489999999
Q ss_pred cccccCCc-cCCcccCCCCCCCEEEcccCcCccccCccccCCCCC--CEEEccCCCC--CCCCChhhhCcc---------
Q 011044 135 LKYNMFHG-KIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKL--TRLNLRQNKL--QGEIPEELGNLA--------- 200 (495)
Q Consensus 135 l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L--~~L~L~~n~l--~~~~~~~l~~l~--------- 200 (495)
+++|.+++ .+|..++++++|++|++++|.+++ ..+..+++| ++|++++|.+ .+..|..+..+.
T Consensus 97 L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~ 173 (520)
T 2z7x_B 97 LSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFP 173 (520)
T ss_dssp CCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECC
T ss_pred ccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEec
Confidence 99999886 467889999999999999998875 345666666 8888888777 445554444322
Q ss_pred --------------------------------------------------------------------------cccEEE
Q 011044 201 --------------------------------------------------------------------------ELEMLW 206 (495)
Q Consensus 201 --------------------------------------------------------------------------~L~~L~ 206 (495)
+|++|+
T Consensus 174 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~ 253 (520)
T 2z7x_B 174 TNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFS 253 (520)
T ss_dssp SSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEE
T ss_pred cCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEE
Confidence 456666
Q ss_pred ecCCcCCCcCchhh-----hcCCCCceeeCCCCcC--------------------------CCCCCcccccccccceeec
Q 011044 207 LQNNSLTGTIPSSI-----FSLSSLLNLDLSLNNF--------------------------TGIIPSSIGNLSSLQKLYL 255 (495)
Q Consensus 207 l~~n~l~~~~~~~l-----~~l~~L~~L~Ls~n~l--------------------------~~~~~~~l~~~~~L~~L~l 255 (495)
+++|.+++.+|..+ ..+++|+.+++++|.+ .... ....+++|++|++
T Consensus 254 l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~L 331 (520)
T 2z7x_B 254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDF 331 (520)
T ss_dssp EEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEEC
T ss_pred eecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEe
Confidence 66666665555554 3333333333333332 1110 0145566666677
Q ss_pred cCcccccccchhhhhCCccccccccccceeee--cccccccCCCCCCeeecccccccccCCc-cccCCCcCCEEeCcCCc
Q 011044 256 SDNQLSGELPANIGNNLPSLQTLSLYVNDFSG--AIPKEIGNLTKLTDLYLDQNKLQGKIPH-EIGNLRKLEWLMLSHNK 332 (495)
Q Consensus 256 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~i~~~~~~-~l~~l~~L~~L~l~~n~ 332 (495)
++|.+++..|..+. .+++|++|++++|.+++ .+|..+..+++|+.|++++|.+.+.+|. .+..+++|++|++++|+
T Consensus 332 s~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~ 410 (520)
T 2z7x_B 332 SNNLLTDTVFENCG-HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI 410 (520)
T ss_dssp CSSCCCTTTTTTCC-CCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSC
T ss_pred ECCccChhhhhhhc-cCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCC
Confidence 66666655555544 56666677776666664 3445566666677777776666653443 35566666666666666
Q ss_pred ccccCCcCccCCCCCcEEEccCCcCceecCCCCCCCCCChhhhhhhhcCCC
Q 011044 333 LVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFLWEYGRE 383 (495)
Q Consensus 333 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~ 383 (495)
+.+..|..+. ++|+.|++++|++. .+|.... .+++|+.|++.+|...
T Consensus 411 l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~-~l~~L~~L~L~~N~l~ 457 (520)
T 2z7x_B 411 LTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVV-KLEALQELNVASNQLK 457 (520)
T ss_dssp CCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGG-GCTTCCEEECCSSCCC
T ss_pred CCcchhhhhc--ccCCEEECCCCccc-ccchhhh-cCCCCCEEECCCCcCC
Confidence 6655554433 56666666666666 5555444 5666666666666554
No 13
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.7e-35 Score=309.92 Aligned_cols=327 Identities=23% Similarity=0.214 Sum_probs=220.9
Q ss_pred CCCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEE
Q 011044 54 SHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESL 133 (495)
Q Consensus 54 ~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L 133 (495)
.+++++|+|++|.+++..|..|+++++|++|++++|.+++..|..+.++++|++|++++|.+.+..+..+.. +++|++|
T Consensus 56 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~-l~~L~~L 134 (606)
T 3t6q_A 56 LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHN-QKTLESL 134 (606)
T ss_dssp CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTT-CTTCCEE
T ss_pred CccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhcc-CCcccEE
Confidence 367888888888888888888888888888888888888777888888888888888888886543444433 7888888
Q ss_pred EcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCC--EEEccCCCCC----------------------
Q 011044 134 FLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLT--RLNLRQNKLQ---------------------- 189 (495)
Q Consensus 134 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~--~L~L~~n~l~---------------------- 189 (495)
++++|.+.+.....+..+++|++|++++|.+++..+..++.+++|+ +|++++|.+.
T Consensus 135 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~ 214 (606)
T 3t6q_A 135 YLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQN 214 (606)
T ss_dssp ECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSC
T ss_pred ECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchh
Confidence 8888887764334444577788888877777766565566666655 5555555443
Q ss_pred -----------------------------------------------------CCCChhhhCcccccEEEecCCcCCCcC
Q 011044 190 -----------------------------------------------------GEIPEELGNLAELEMLWLQNNSLTGTI 216 (495)
Q Consensus 190 -----------------------------------------------------~~~~~~l~~l~~L~~L~l~~n~l~~~~ 216 (495)
+..+..|..+++|++|++++|.++ .+
T Consensus 215 ~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~l 293 (606)
T 3t6q_A 215 LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-EL 293 (606)
T ss_dssp HHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CC
T ss_pred HHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CC
Confidence 222333666777888888888777 66
Q ss_pred chhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeecc--ccccc
Q 011044 217 PSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAI--PKEIG 294 (495)
Q Consensus 217 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~l~ 294 (495)
|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.++......+++|++|++++|.+.+.. +..+.
T Consensus 294 p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 373 (606)
T 3t6q_A 294 PSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLR 373 (606)
T ss_dssp CSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTT
T ss_pred ChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcc
Confidence 7777778888888888888777666667777777777777777665555543336667777777776665443 45566
Q ss_pred CCCCCCeeecccccccccCCccccCCCcCCEEeCcCCcccccCCc-CccCCCCCcEEEccCCcCceecCCCCCCCCCChh
Q 011044 295 NLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPA-PIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLE 373 (495)
Q Consensus 295 ~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 373 (495)
.+++|+.|++++|.+.+..+..|..+++|++|++++|++.+..+. .+..+++|+.|++++|.+.+..|.. ...+++|+
T Consensus 374 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~ 452 (606)
T 3t6q_A 374 NLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQL-FDGLPALQ 452 (606)
T ss_dssp TCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTT-TTTCTTCC
T ss_pred cCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHH-HhCCCCCC
Confidence 666666666666666655555666666666666666666554433 2555666666666666665433332 22455555
Q ss_pred hhhhhhcCCC
Q 011044 374 ELFLWEYGRE 383 (495)
Q Consensus 374 ~L~l~~~~~~ 383 (495)
+|++.+|...
T Consensus 453 ~L~L~~n~l~ 462 (606)
T 3t6q_A 453 HLNLQGNHFP 462 (606)
T ss_dssp EEECTTCBCG
T ss_pred EEECCCCCCC
Confidence 5555555443
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.4e-35 Score=307.94 Aligned_cols=326 Identities=22% Similarity=0.199 Sum_probs=215.2
Q ss_pred CCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEE
Q 011044 55 HRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLF 134 (495)
Q Consensus 55 ~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~ 134 (495)
++++.|++++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|++++|.+.+..|..+.. +++|++|+
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~ 106 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG-LSSLQKLV 106 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT-CTTCCEEE
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcC-cccccccc
Confidence 45666666666666655556666666666666666666555556666666666666666654433333333 66666666
Q ss_pred cccccCCccCCcccCCCCCCCEEEcccCcCcc-ccCccccCCCCCCEEEccCCCCCCCCChhh-----------------
Q 011044 135 LKYNMFHGKIPSTLSSCKQLRELSLSSNYFSG-TIPKEIGNLTKLTRLNLRQNKLQGEIPEEL----------------- 196 (495)
Q Consensus 135 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l----------------- 196 (495)
+++|.++...+..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+++..+..+
T Consensus 107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~ 186 (570)
T 2z63_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (570)
T ss_dssp CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred ccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCC
Confidence 66666554333345566666666666665554 245556666666666665555443222222
Q ss_pred --------------------------------------------------------------------------------
Q 011044 197 -------------------------------------------------------------------------------- 196 (495)
Q Consensus 197 -------------------------------------------------------------------------------- 196 (495)
T Consensus 187 n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~ 266 (570)
T 2z63_A 187 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266 (570)
T ss_dssp CCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEE
T ss_pred CCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhc
Confidence
Q ss_pred ------------hCcccccEEEecCCcCCCcCchhh------------------------------------------hc
Q 011044 197 ------------GNLAELEMLWLQNNSLTGTIPSSI------------------------------------------FS 222 (495)
Q Consensus 197 ------------~~l~~L~~L~l~~n~l~~~~~~~l------------------------------------------~~ 222 (495)
..+++|+.|++++|.++ .+|..+ ..
T Consensus 267 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~ 345 (570)
T 2z63_A 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVD 345 (570)
T ss_dssp TTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCB
T ss_pred chhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCcccccccccc
Confidence 22333444444444333 122111 35
Q ss_pred CCCCceeeCCCCcCCCCC--CcccccccccceeeccCcccccccchhhhhCCccccccccccceeeeccc-ccccCCCCC
Q 011044 223 LSSLLNLDLSLNNFTGII--PSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIP-KEIGNLTKL 299 (495)
Q Consensus 223 l~~L~~L~Ls~n~l~~~~--~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L 299 (495)
+++|++|++++|.+++.. +..+..+++|+.|++++|.+.+ ++..+. .+++|+.|++++|.+.+..+ ..+..+++|
T Consensus 346 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 423 (570)
T 2z63_A 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423 (570)
T ss_dssp CTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE-EEEEEE-TCTTCCEEECTTSEEESCTTSCTTTTCTTC
T ss_pred CCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc-cccccc-ccCCCCEEEccCCccccccchhhhhcCCCC
Confidence 677888888888877553 5667788899999999998874 443343 78888999999888876655 467888888
Q ss_pred CeeecccccccccCCccccCCCcCCEEeCcCCccc-ccCCcCccCCCCCcEEEccCCcCceecCCCCCCCCCChhhhhhh
Q 011044 300 TDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLV-GVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFLW 378 (495)
Q Consensus 300 ~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 378 (495)
+.|++++|.+.+..+..+..+++|++|++++|.+. +.+|..+..+++|+.|++++|++.+..|... ..+++|+.|++.
T Consensus 424 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~ 502 (570)
T 2z63_A 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF-NSLSSLQVLNMA 502 (570)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEECC
T ss_pred CEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhh-hcccCCCEEeCC
Confidence 99999988888878888888888999999888887 5677888888888999999888886656544 357888888888
Q ss_pred hcCCCcc
Q 011044 379 EYGREGR 385 (495)
Q Consensus 379 ~~~~~~~ 385 (495)
+|...+.
T Consensus 503 ~n~l~~~ 509 (570)
T 2z63_A 503 SNQLKSV 509 (570)
T ss_dssp SSCCSCC
T ss_pred CCcCCCC
Confidence 8876653
No 15
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3.4e-35 Score=306.04 Aligned_cols=318 Identities=24% Similarity=0.258 Sum_probs=205.0
Q ss_pred CCCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEE
Q 011044 54 SHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESL 133 (495)
Q Consensus 54 ~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L 133 (495)
++++++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++++|.+. .+|.. .+++|++|
T Consensus 51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L 126 (562)
T 3a79_B 51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC---PMASLRHL 126 (562)
T ss_dssp CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC---CCTTCSEE
T ss_pred CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc---ccccCCEE
Confidence 468999999999999888889999999999999999999888999999999999999999986 67766 49999999
Q ss_pred EcccccCCc-cCCcccCCCCCCCEEEcccCcCccccCccccCCCCC--CEEEccCCCC--CCCCChhhhCcc--------
Q 011044 134 FLKYNMFHG-KIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKL--TRLNLRQNKL--QGEIPEELGNLA-------- 200 (495)
Q Consensus 134 ~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L--~~L~L~~n~l--~~~~~~~l~~l~-------- 200 (495)
++++|.+++ ..|..++++++|++|++++|.+++. .+..+++| ++|++++|.+ ++..|..+..+.
T Consensus 127 ~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l 203 (562)
T 3a79_B 127 DLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVF 203 (562)
T ss_dssp ECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEE
T ss_pred ECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEe
Confidence 999999986 3468899999999999999998753 34455555 9999998888 555555444322
Q ss_pred -------------------------------------------------------------------------cccEEEe
Q 011044 201 -------------------------------------------------------------------------ELEMLWL 207 (495)
Q Consensus 201 -------------------------------------------------------------------------~L~~L~l 207 (495)
+|++|++
T Consensus 204 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l 283 (562)
T 3a79_B 204 HPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNI 283 (562)
T ss_dssp CSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEE
T ss_pred cCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEE
Confidence 5666666
Q ss_pred cCCcCCCcCchhh-----------------------------------------------------hcCCCCceeeCCCC
Q 011044 208 QNNSLTGTIPSSI-----------------------------------------------------FSLSSLLNLDLSLN 234 (495)
Q Consensus 208 ~~n~l~~~~~~~l-----------------------------------------------------~~l~~L~~L~Ls~n 234 (495)
++|.+++.+|..+ ..+++|++|++++|
T Consensus 284 ~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n 363 (562)
T 3a79_B 284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQN 363 (562)
T ss_dssp EEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSS
T ss_pred eccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCC
Confidence 6666665555543 33445555555555
Q ss_pred cCCCCCCcccccccccceeeccCcccccc--cchhhhhCCccccccccccceeeecccc-cccCCCCCCeeecccccccc
Q 011044 235 NFTGIIPSSIGNLSSLQKLYLSDNQLSGE--LPANIGNNLPSLQTLSLYVNDFSGAIPK-EIGNLTKLTDLYLDQNKLQG 311 (495)
Q Consensus 235 ~l~~~~~~~l~~~~~L~~L~l~~n~l~~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~i~~ 311 (495)
.+++..|..++.+++|+.|++++|.+++. +|..+. .+++|+.|++++|.+++.+|. .+..+++|+.|++++|++++
T Consensus 364 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 442 (562)
T 3a79_B 364 VFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTK-NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTG 442 (562)
T ss_dssp CCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTT-TCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCG
T ss_pred ccccchhhhhcccCCCCEEECCCCCcCCcccchhhhc-CCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCc
Confidence 55554455555555555555555555421 111222 445555555555555442322 24445555555555555544
Q ss_pred cCCccccCCCcCCEEeCcCCcccccCCcCccCCCCCcEEEccCCcCceecCCCCCCCCCChhhhhhhhcCCC
Q 011044 312 KIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFLWEYGRE 383 (495)
Q Consensus 312 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~ 383 (495)
.++..+. ++|++|++++|++. .+|..+..+++|+.|++++|+++ .+|...+..+++|+.+++.+|...
T Consensus 443 ~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 443 SVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp GGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBC
T ss_pred chhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcC
Confidence 3333222 45555555555554 34444445555555555555555 344433334555555555555433
No 16
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.9e-35 Score=310.99 Aligned_cols=207 Identities=23% Similarity=0.190 Sum_probs=179.0
Q ss_pred CCCCCEEEccCCCCCCC--CChhhhCcccccEEEecCCcCCCcCchhhhcCCCCceeeCCCCcCCCCCC-cccccccccc
Q 011044 175 LTKLTRLNLRQNKLQGE--IPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIP-SSIGNLSSLQ 251 (495)
Q Consensus 175 l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~~~~L~ 251 (495)
+++|++|++++|.+++. ++..+..+++|++|++++|.+++ +|..+..+++|++|++++|.+.+..+ ..+..+++|+
T Consensus 349 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 427 (606)
T 3vq2_A 349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLL 427 (606)
T ss_dssp CTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCC
T ss_pred CCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCC
Confidence 34555555666655543 36778889999999999999884 66889999999999999999998877 6789999999
Q ss_pred eeeccCcccccccchhhhhCCccccccccccceeee-cccccccCCCCCCeeecccccccccCCccccCCCcCCEEeCcC
Q 011044 252 KLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSG-AIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSH 330 (495)
Q Consensus 252 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~ 330 (495)
.|++++|.+.+..|..+. .+++|++|++++|.+.+ .+|..+..+++|+.|++++|++++..|..+..+++|++|++++
T Consensus 428 ~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 506 (606)
T 3vq2_A 428 YLDISYTNTKIDFDGIFL-GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 506 (606)
T ss_dssp EEECTTSCCEECCTTTTT-TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EEECcCCCCCccchhhhc-CCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCC
Confidence 999999999977777665 89999999999999987 4788899999999999999999988888999999999999999
Q ss_pred CcccccCCcCccCCCCCcEEEccCCcCceecCCCCCCCCC-ChhhhhhhhcCCCcc
Q 011044 331 NKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLP-NLEELFLWEYGREGR 385 (495)
Q Consensus 331 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~l~~~~~~~~ 385 (495)
|++.+..|..+..+++|+.|++++|++. .+|.. ...++ +|+.+++.+|+..+.
T Consensus 507 N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~-~~~l~~~L~~l~l~~N~~~c~ 560 (606)
T 3vq2_A 507 NNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGI-LQHFPKSLAFFNLTNNSVACI 560 (606)
T ss_dssp SCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESC-GGGSCTTCCEEECCSCCCCCS
T ss_pred CcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHh-HhhhcccCcEEEccCCCcccC
Confidence 9999988999999999999999999998 67766 44566 599999999887653
No 17
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.3e-35 Score=301.36 Aligned_cols=308 Identities=22% Similarity=0.243 Sum_probs=259.8
Q ss_pred CCCeEEEEcCCCCCcccC-chhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChh-HhhcCCCCC
Q 011044 54 SHRVAALNISGLNLTGTI-PSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPN-FCNQMSNLE 131 (495)
Q Consensus 54 ~~~l~~L~L~~~~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~-~~~~l~~L~ 131 (495)
.+++++|++++|.+.+.+ +..|.++++|++|+|++|.+++..|..+.++++|++|++++|.+.+.+|.. .+..+++|+
T Consensus 53 l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~ 132 (455)
T 3v47_A 53 LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLE 132 (455)
T ss_dssp CTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCC
T ss_pred CccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCC
Confidence 468999999999998665 467999999999999999999888999999999999999999997755543 234499999
Q ss_pred EEEcccccCCccCCcc-cCCCCCCCEEEcccCcCccccCccccCC--CCCCEEEccCCCCCCCCChh--------hhCcc
Q 011044 132 SLFLKYNMFHGKIPST-LSSCKQLRELSLSSNYFSGTIPKEIGNL--TKLTRLNLRQNKLQGEIPEE--------LGNLA 200 (495)
Q Consensus 132 ~L~l~~n~l~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~--------l~~l~ 200 (495)
+|++++|.+++..|.. +.++++|++|++++|.+.+..+..+..+ .+|+.|++++|.+.+..+.. +..++
T Consensus 133 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~ 212 (455)
T 3v47_A 133 MLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNT 212 (455)
T ss_dssp EEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTC
T ss_pred EEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccc
Confidence 9999999999877766 8899999999999999998888777665 56777777777766443322 22456
Q ss_pred cccEEEecCCcCCCcCchhhhc---------------------------------------CCCCceeeCCCCcCCCCCC
Q 011044 201 ELEMLWLQNNSLTGTIPSSIFS---------------------------------------LSSLLNLDLSLNNFTGIIP 241 (495)
Q Consensus 201 ~L~~L~l~~n~l~~~~~~~l~~---------------------------------------l~~L~~L~Ls~n~l~~~~~ 241 (495)
+|++|++++|.+++..+..+.. .++|++|++++|.+.+..+
T Consensus 213 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 292 (455)
T 3v47_A 213 SITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLK 292 (455)
T ss_dssp EEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECT
T ss_pred eeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccch
Confidence 6777777777666544433321 2689999999999999889
Q ss_pred cccccccccceeeccCcccccccchhhhhCCccccccccccceeeecccccccCCCCCCeeecccccccccCCccccCCC
Q 011044 242 SSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLR 321 (495)
Q Consensus 242 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~ 321 (495)
..++.+++|++|++++|.+++..+..+. .+++|++|++++|.+++..+..+..+++|++|++++|++++..|..|..++
T Consensus 293 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 371 (455)
T 3v47_A 293 SVFSHFTDLEQLTLAQNEINKIDDNAFW-GLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP 371 (455)
T ss_dssp TTTTTCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred hhcccCCCCCEEECCCCcccccChhHhc-CcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccc
Confidence 9999999999999999999966666665 799999999999999988888999999999999999999988889999999
Q ss_pred cCCEEeCcCCcccccCCcCccCCCCCcEEEccCCcCceecC
Q 011044 322 KLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLP 362 (495)
Q Consensus 322 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 362 (495)
+|++|++++|++++..+..+..+++|+.|++++|++.+..|
T Consensus 372 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 372 NLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 99999999999998777778999999999999999986543
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=9.6e-36 Score=319.58 Aligned_cols=323 Identities=21% Similarity=0.292 Sum_probs=270.4
Q ss_pred CCCeEEEEcCCCCCcc-----------------cCchhcc--CCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCc
Q 011044 54 SHRVAALNISGLNLTG-----------------TIPSELA--NLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNT 114 (495)
Q Consensus 54 ~~~l~~L~L~~~~l~~-----------------~~~~~l~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 114 (495)
.++++.|+|++|.+++ .+|..++ ++++|++|+|++|.+.+.+|..+.++++|++|++++|.
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~ 526 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR 526 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence 4689999999999998 4888888 99999999999999999999999999999999999998
Q ss_pred -ccc-cCChhHhh------cCCCCCEEEcccccCCccCCc--ccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEcc
Q 011044 115 -LFG-ELPPNFCN------QMSNLESLFLKYNMFHGKIPS--TLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLR 184 (495)
Q Consensus 115 -~~~-~~p~~~~~------~l~~L~~L~l~~n~l~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 184 (495)
+.+ .+|..+.. .+++|++|++++|.++ .+|. .++++++|++|++++|.++ .+| .++.+++|++|+++
T Consensus 527 ~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls 603 (876)
T 4ecn_A 527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLD 603 (876)
T ss_dssp TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECC
T ss_pred CcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECc
Confidence 887 88887765 2349999999999999 8888 8999999999999999999 788 89999999999999
Q ss_pred CCCCCCCCChhhhCccc-ccEEEecCCcCCCcCchhhhcCCC--CceeeCCCCcCCCCCCcc---cc--cccccceeecc
Q 011044 185 QNKLQGEIPEELGNLAE-LEMLWLQNNSLTGTIPSSIFSLSS--LLNLDLSLNNFTGIIPSS---IG--NLSSLQKLYLS 256 (495)
Q Consensus 185 ~n~l~~~~~~~l~~l~~-L~~L~l~~n~l~~~~~~~l~~l~~--L~~L~Ls~n~l~~~~~~~---l~--~~~~L~~L~l~ 256 (495)
+|.+. .+|..+.++++ |+.|++++|.++ .+|..+..++. |+.|++++|.+.+.+|.. +. .+++|+.|+++
T Consensus 604 ~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls 681 (876)
T 4ecn_A 604 YNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLS 681 (876)
T ss_dssp SSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECC
T ss_pred CCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEcc
Confidence 99999 88888999999 999999999998 77877776654 999999999998766532 22 33478899999
Q ss_pred CcccccccchhhhhCCccccccccccceeeecccccccC--------CCCCCeeecccccccccCCcccc--CCCcCCEE
Q 011044 257 DNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGN--------LTKLTDLYLDQNKLQGKIPHEIG--NLRKLEWL 326 (495)
Q Consensus 257 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~--------l~~L~~L~L~~n~i~~~~~~~l~--~l~~L~~L 326 (495)
+|.++ .+|..++..+++|+.|++++|.++ .+|..+.. +++|+.|+|++|+++ .+|..+. .+++|+.|
T Consensus 682 ~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L 758 (876)
T 4ecn_A 682 YNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNM 758 (876)
T ss_dssp SSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEE
T ss_pred CCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEE
Confidence 99888 778777767888888888888887 45544332 237888888888888 6777776 88888888
Q ss_pred eCcCCcccccCCcCccCCCCCcEEEccC------CcCceecCCCCCCCCCChhhhhhhhcCCCcccc
Q 011044 327 MLSHNKLVGVVPAPIFNLSTLISLQLHN------NSLSGSLPSSADVPLPNLEELFLWEYGREGRVS 387 (495)
Q Consensus 327 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~------n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 387 (495)
+|++|++.+ +|..+..+++|+.|++++ |.+.+.+|.... .+++|+.|++.+|.. +.++
T Consensus 759 ~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~-~L~~L~~L~Ls~N~L-~~Ip 822 (876)
T 4ecn_A 759 DVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGIT-TCPSLIQLQIGSNDI-RKVD 822 (876)
T ss_dssp ECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGG-GCSSCCEEECCSSCC-CBCC
T ss_pred EeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHh-cCCCCCEEECCCCCC-CccC
Confidence 888888886 677788888888888866 667777776554 478888888888877 4444
No 19
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=6e-35 Score=317.78 Aligned_cols=314 Identities=23% Similarity=0.231 Sum_probs=266.8
Q ss_pred CCCccceeeeCCCCCCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccC-CccccCCCCCcEEEccCCcccccC
Q 011044 41 SFCYWTGVTCDVRSHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSI-PSSIFNMSSLLSIYFNNNTLFGEL 119 (495)
Q Consensus 41 ~~c~w~gv~c~~~~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~l~~n~~~~~~ 119 (495)
..|.|+.|.+ .++++++|+|++|.+++..+..|.++++|++|+|++|...+.+ |..|.++++|++|++++|.+.+..
T Consensus 12 s~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~ 89 (844)
T 3j0a_A 12 RFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLH 89 (844)
T ss_dssp SCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEEC
T ss_pred cCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccC
Confidence 3466777776 3689999999999999999999999999999999999666666 788999999999999999998777
Q ss_pred ChhHhhcCCCCCEEEcccccCCccCCcc--cCCCCCCCEEEcccCcCccccC-ccccCCCCCCEEEccCCCCCCCCChhh
Q 011044 120 PPNFCNQMSNLESLFLKYNMFHGKIPST--LSSCKQLRELSLSSNYFSGTIP-KEIGNLTKLTRLNLRQNKLQGEIPEEL 196 (495)
Q Consensus 120 p~~~~~~l~~L~~L~l~~n~l~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l 196 (495)
|..+.. +++|++|++++|.+++.++.. ++++++|++|++++|.+++..+ ..|+++++|++|++++|.+.+..+..+
T Consensus 90 p~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l 168 (844)
T 3j0a_A 90 PDAFQG-LFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHEL 168 (844)
T ss_dssp TTSSCS-CSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGG
T ss_pred HhHccC-CcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHc
Confidence 777766 999999999999999866665 8999999999999999987655 579999999999999999998888888
Q ss_pred hCc--ccccEEEecCCcCCCcCchhhhcCCC------CceeeCCCCcCCCCCCccccc----------------------
Q 011044 197 GNL--AELEMLWLQNNSLTGTIPSSIFSLSS------LLNLDLSLNNFTGIIPSSIGN---------------------- 246 (495)
Q Consensus 197 ~~l--~~L~~L~l~~n~l~~~~~~~l~~l~~------L~~L~Ls~n~l~~~~~~~l~~---------------------- 246 (495)
..+ ++|+.|++++|.+.+..+..+..+++ |+.|++++|.+.+..+..+..
T Consensus 169 ~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~ 248 (844)
T 3j0a_A 169 EPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFG 248 (844)
T ss_dssp HHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSS
T ss_pred ccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccc
Confidence 887 89999999999999887777766665 999999999776654433321
Q ss_pred ----------------ccccceeeccCcccccccchhhhhCCccccccccccceeeecccccccCCCCCCeeeccccccc
Q 011044 247 ----------------LSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQ 310 (495)
Q Consensus 247 ----------------~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~ 310 (495)
.++|+.|++++|.+.+..+..+. .+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 249 ~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 327 (844)
T 3j0a_A 249 FHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFE-TLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG 327 (844)
T ss_dssp CSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSS-SCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCS
T ss_pred ccccCCCChhhhhccccCCccEEECCCCcccccChhhhh-cCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCC
Confidence 25788888888888755554444 7888999999999888887888888899999999999888
Q ss_pred ccCCccccCCCcCCEEeCcCCcccccCCcCccCCCCCcEEEccCCcCc
Q 011044 311 GKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLS 358 (495)
Q Consensus 311 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 358 (495)
+..+..|..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 328 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 375 (844)
T 3j0a_A 328 ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375 (844)
T ss_dssp CCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSC
T ss_pred ccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCC
Confidence 777888888999999999999888777777888889999999988886
No 20
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.8e-34 Score=307.76 Aligned_cols=325 Identities=25% Similarity=0.274 Sum_probs=205.2
Q ss_pred CCCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEE
Q 011044 54 SHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESL 133 (495)
Q Consensus 54 ~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L 133 (495)
++++++|+|++|.+++..+..|+++++|++|++++|.+++..|..+.++++|++|++++|.+. .+|...+..+++|++|
T Consensus 24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L 102 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTEL 102 (680)
T ss_dssp CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEE
T ss_pred CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCCCEE
Confidence 467899999999998877778888999999999999888888888888899999999988885 5555434448889999
Q ss_pred EcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhh--CcccccEEEecCCc
Q 011044 134 FLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELG--NLAELEMLWLQNNS 211 (495)
Q Consensus 134 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~l~~n~ 211 (495)
++++|.+++..+..|+++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+. .+++|++|++++|.
T Consensus 103 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182 (680)
T ss_dssp ECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred ECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc
Confidence 9999888876667888888999999998888877777788888888888888888766665554 44677788877777
Q ss_pred CCCcCchhhhcC---------------------------CC--------------------------CceeeCCCCcCCC
Q 011044 212 LTGTIPSSIFSL---------------------------SS--------------------------LLNLDLSLNNFTG 238 (495)
Q Consensus 212 l~~~~~~~l~~l---------------------------~~--------------------------L~~L~Ls~n~l~~ 238 (495)
+++..+..+..+ ++ |++|++++|.+++
T Consensus 183 l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~ 262 (680)
T 1ziw_A 183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV 262 (680)
T ss_dssp CCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCE
T ss_pred ccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCc
Confidence 765554433322 22 5555555555554
Q ss_pred CCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeee-----cccc----cccCCCCCCeeecccccc
Q 011044 239 IIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSG-----AIPK----EIGNLTKLTDLYLDQNKL 309 (495)
Q Consensus 239 ~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~-----~~~~----~l~~l~~L~~L~L~~n~i 309 (495)
..+..++.+++|++|++++|.+.+..+..+. .+++|+.|++++|...+ .+|. .+..+++|+.|++++|.+
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l 341 (680)
T 1ziw_A 263 VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLH-GLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDI 341 (680)
T ss_dssp ECTTTTTTCTTCCEEECCSCCBSEECTTTTT-TCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCB
T ss_pred cCcccccCcccccEeeCCCCccCccChhhhc-CCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCcc
Confidence 4444555555555555555555433332222 22233333222221110 0010 233344444555555555
Q ss_pred cccCCccccCCCcCCEEeC----------------------------cCCcccccCCcCccCCCCCcEEEccCCcCceec
Q 011044 310 QGKIPHEIGNLRKLEWLML----------------------------SHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSL 361 (495)
Q Consensus 310 ~~~~~~~l~~l~~L~~L~l----------------------------~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 361 (495)
.+..+..|..+++|++|++ ++|++.+..+..+..+++|+.|++++|.+.+.+
T Consensus 342 ~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 421 (680)
T 1ziw_A 342 PGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQEL 421 (680)
T ss_dssp CCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEEC
T ss_pred CCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCcccc
Confidence 4444444444444444333 344444455556666666777777777666655
Q ss_pred CCCCCCCCCChhhhhhhhc
Q 011044 362 PSSADVPLPNLEELFLWEY 380 (495)
Q Consensus 362 ~~~~~~~l~~L~~L~l~~~ 380 (495)
|...+..+++|+++++..|
T Consensus 422 ~~~~~~~l~~L~~L~Ls~n 440 (680)
T 1ziw_A 422 TGQEWRGLENIFEIYLSYN 440 (680)
T ss_dssp CSGGGTTCTTCCEEECCSC
T ss_pred CcccccCcccccEEecCCC
Confidence 5444444455555544443
No 21
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=5.7e-35 Score=303.76 Aligned_cols=336 Identities=21% Similarity=0.242 Sum_probs=241.1
Q ss_pred CCccceeeeCCC-----------CCCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEc
Q 011044 42 FCYWTGVTCDVR-----------SHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYF 110 (495)
Q Consensus 42 ~c~w~gv~c~~~-----------~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 110 (495)
.|.|.|+ |+.+ ++++++|+|++|.+++..|..|+++++|++|++++|.+++..|..|.++++|++|++
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 81 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEEC
Confidence 4777776 6431 358999999999999998899999999999999999999888899999999999999
Q ss_pred cCCcccccCChhHhhcCCCCCEEEcccccCCc-cCCcccCCCCCCCEEEcccCcCccccC-ccccCCCCCCEEEccCCCC
Q 011044 111 NNNTLFGELPPNFCNQMSNLESLFLKYNMFHG-KIPSTLSSCKQLRELSLSSNYFSGTIP-KEIGNLTKLTRLNLRQNKL 188 (495)
Q Consensus 111 ~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l 188 (495)
++|.+.+..|..+. .+++|++|++++|.+++ ..|..++++++|++|++++|.+.+.+| ..+..+++|++|++++|.+
T Consensus 82 s~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l 160 (549)
T 2z81_A 82 SDNHLSSLSSSWFG-PLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL 160 (549)
T ss_dssp TTSCCCSCCHHHHT-TCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCccCccCHHHhc-cCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc
Confidence 99999755544454 49999999999999986 457789999999999999998544554 6789999999999999999
Q ss_pred CCCCChhhhCcccccEEEecCCcCCCcCchh-hhcCCCCceeeCCCCcCCCCC--Ccc-c--------------------
Q 011044 189 QGEIPEELGNLAELEMLWLQNNSLTGTIPSS-IFSLSSLLNLDLSLNNFTGII--PSS-I-------------------- 244 (495)
Q Consensus 189 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~Ls~n~l~~~~--~~~-l-------------------- 244 (495)
.+..|..++.+++|+.|++++|.+. .++.. +..+++|++|++++|.+++.. +.. .
T Consensus 161 ~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 239 (549)
T 2z81_A 161 RNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDES 239 (549)
T ss_dssp CEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHH
T ss_pred cccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhH
Confidence 9888888888877777777777665 23333 244666777777666665421 000 0
Q ss_pred -------------------------------------------------------------------ccccccceeeccC
Q 011044 245 -------------------------------------------------------------------GNLSSLQKLYLSD 257 (495)
Q Consensus 245 -------------------------------------------------------------------~~~~~L~~L~l~~ 257 (495)
....+|+.|++++
T Consensus 240 ~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~ 319 (549)
T 2z81_A 240 FNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVEN 319 (549)
T ss_dssp HHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEES
T ss_pred HHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEecc
Confidence 0012344555555
Q ss_pred cccccccchhhhhCCccccccccccceeeeccc---ccccCCCCCCeeecccccccccCC--ccccCCCcCCEEeCcCCc
Q 011044 258 NQLSGELPANIGNNLPSLQTLSLYVNDFSGAIP---KEIGNLTKLTDLYLDQNKLQGKIP--HEIGNLRKLEWLMLSHNK 332 (495)
Q Consensus 258 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~L~~n~i~~~~~--~~l~~l~~L~~L~l~~n~ 332 (495)
|.+. .+|..++..+++|++|++++|.+.+.++ ..+..+++|+.|++++|++++..+ ..+..+++|++|++++|+
T Consensus 320 n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~ 398 (549)
T 2z81_A 320 SKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT 398 (549)
T ss_dssp SCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCC
T ss_pred Cccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCC
Confidence 5544 4555554457777777777777766543 235667777777777777764321 346677777777777777
Q ss_pred ccccCCcCccCCCCCcEEEccCCcCceecCCCCC-----------------CCCCChhhhhhhhcCCC
Q 011044 333 LVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSAD-----------------VPLPNLEELFLWEYGRE 383 (495)
Q Consensus 333 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----------------~~l~~L~~L~l~~~~~~ 383 (495)
+. .+|..+..+++|++|++++|.+. .+|.... ..+++|++|++.+|...
T Consensus 399 l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~ 464 (549)
T 2z81_A 399 FH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK 464 (549)
T ss_dssp CC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS
T ss_pred Cc-cCChhhcccccccEEECCCCCcc-cccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccC
Confidence 76 45666666777777777777665 3332211 13556666666666554
No 22
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=6.3e-35 Score=282.54 Aligned_cols=266 Identities=22% Similarity=0.299 Sum_probs=178.2
Q ss_pred CCChHHHHHHHHHHhhCCCCCCccccCCC----CCCCCCCccceeeeCC--------CCCCeEEEEcCCCCCcccCchhc
Q 011044 8 TSITTDQQALLVLKAHVTDDPTNFLAKNW----NTSSSFCYWTGVTCDV--------RSHRVAALNISGLNLTGTIPSEL 75 (495)
Q Consensus 8 ~~~~~~~~~ll~~~~~~~~~~~~~l~~~w----~~~~~~c~w~gv~c~~--------~~~~l~~L~L~~~~l~~~~~~~l 75 (495)
....+|+.||++||+.+..|+.+.+. +| ....++|.|.|+.|.. ..++|+.|+|+++.++ .+|..+
T Consensus 23 ~~~~~~~~aLl~~k~~~~~~~~~~~~-~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l 100 (328)
T 4fcg_A 23 TALRPYHDVLSQWQRHYNADRNRWHS-AWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQA 100 (328)
T ss_dssp CCCCCHHHHHHHHHHHHHHCCTTHHH-HHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCG
T ss_pred ccCchHHHHHHHHHHhccCCchhhhh-hhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhh
Confidence 34556889999999998667877776 99 4567899999999842 2478999999999998 778888
Q ss_pred cCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcccccCCccCCcccCC-----
Q 011044 76 ANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSS----- 150 (495)
Q Consensus 76 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~----- 150 (495)
.++++|++|+|++|.++ .+|..+.++++|++|++++|.+. .+|..+.. +++|++|++++|.+.+.+|..+..
T Consensus 101 ~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~-l~~L~~L~L~~n~~~~~~p~~~~~~~~~~ 177 (328)
T 4fcg_A 101 FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIAS-LNRLRELSIRACPELTELPEPLASTDASG 177 (328)
T ss_dssp GGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGG-CTTCCEEEEEEETTCCCCCSCSEEEC-CC
T ss_pred hhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhc-CcCCCEEECCCCCCccccChhHhhccchh
Confidence 88999999999999998 88888999999999999999886 77877766 889999999988887777776543
Q ss_pred ----CCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCcCchhhhcCCCC
Q 011044 151 ----CKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSL 226 (495)
Q Consensus 151 ----l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 226 (495)
+++|++|++++|.++ .+|..++.+++|++|++++|.+++ +|..+..+++|++|++++|.+.+.+|..+..+++|
T Consensus 178 ~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L 255 (328)
T 4fcg_A 178 EHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL 255 (328)
T ss_dssp CEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCC
T ss_pred hhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCC
Confidence 555555555555555 445555555555555555555542 33345555555555555555554455445555555
Q ss_pred ceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccc
Q 011044 227 LNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLY 281 (495)
Q Consensus 227 ~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~ 281 (495)
++|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+. .+++|+.+++.
T Consensus 256 ~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~-~L~~L~~l~l~ 309 (328)
T 4fcg_A 256 KRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA-QLPANCIILVP 309 (328)
T ss_dssp CEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGG-GSCTTCEEECC
T ss_pred CEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHh-hccCceEEeCC
Confidence 5555555544444444444444444444444444444444433 34444444433
No 23
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=5e-34 Score=298.99 Aligned_cols=309 Identities=20% Similarity=0.185 Sum_probs=259.5
Q ss_pred CCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEE
Q 011044 55 HRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLF 134 (495)
Q Consensus 55 ~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~ 134 (495)
.+++.|+++++.++...+..+.++++|++|+|++|.+++..|..|..+++|++|++++|.+.+..|..+. .+++|++|+
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~ 129 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ-NVPLLTVLV 129 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEE
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHc-CCCCCCEEE
Confidence 5679999999999877777789999999999999999988888999999999999999999765554444 499999999
Q ss_pred cccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCC
Q 011044 135 LKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTG 214 (495)
Q Consensus 135 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 214 (495)
+++|.+++..+..|+++++|++|++++|.+++..|..|+.+++|++|++++|.+++. + ++.+++|+.|++++|.+++
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~--~~~l~~L~~L~l~~n~l~~ 206 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--LSLIPSLFHANVSYNLLST 206 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-C--GGGCTTCSEEECCSSCCSE
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-C--hhhhhhhhhhhcccCcccc
Confidence 999999965556679999999999999999988888899999999999999999854 2 6678899999999998864
Q ss_pred cCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeeccccccc
Q 011044 215 TIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIG 294 (495)
Q Consensus 215 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 294 (495)
+...++|+.|++++|.+....+. ..++|+.|++++|.+++. ..+. .+++|+.|++++|.+.+..|..+.
T Consensus 207 -----l~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~L~~n~l~~~--~~l~-~l~~L~~L~Ls~N~l~~~~~~~~~ 275 (597)
T 3oja_B 207 -----LAIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDT--AWLL-NYPGLVEVDLSYNELEKIMYHPFV 275 (597)
T ss_dssp -----EECCTTCSEEECCSSCCCEEECS---CCSCCCEEECCSSCCCCC--GGGG-GCTTCSEEECCSSCCCEEESGGGT
T ss_pred -----ccCCchhheeeccCCcccccccc---cCCCCCEEECCCCCCCCC--hhhc-cCCCCCEEECCCCccCCCCHHHhc
Confidence 34456899999999988754332 236899999999998752 3444 788999999999999888888899
Q ss_pred CCCCCCeeecccccccccCCccccCCCcCCEEeCcCCcccccCCcCccCCCCCcEEEccCCcCceecCCCCCCCCCChhh
Q 011044 295 NLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEE 374 (495)
Q Consensus 295 ~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 374 (495)
.+++|+.|+|++|.+++ +|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+.+ ++ ...+++|+.
T Consensus 276 ~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~-~~---~~~~~~L~~ 349 (597)
T 3oja_B 276 KMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK---LSTHHTLKN 349 (597)
T ss_dssp TCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC---CCTTCCCSE
T ss_pred CccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCC-cC---hhhcCCCCE
Confidence 99999999999999885 5666777899999999999988 466677888999999999999874 33 335788888
Q ss_pred hhhhhcCCCc
Q 011044 375 LFLWEYGREG 384 (495)
Q Consensus 375 L~l~~~~~~~ 384 (495)
|++.+|...+
T Consensus 350 L~l~~N~~~~ 359 (597)
T 3oja_B 350 LTLSHNDWDC 359 (597)
T ss_dssp EECCSSCEEH
T ss_pred EEeeCCCCCC
Confidence 8888877653
No 24
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.9e-33 Score=304.53 Aligned_cols=321 Identities=22% Similarity=0.208 Sum_probs=279.5
Q ss_pred EEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEccc
Q 011044 58 AALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKY 137 (495)
Q Consensus 58 ~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~ 137 (495)
+..+.++++++. +|. -.++|++|+|++|.+++..+..|.++++|++|++++|...+.+++..+..+++|++|++++
T Consensus 7 ~~~dcs~~~L~~-vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 7 RIAFYRFCNLTQ-VPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEEESCCCSSC-CCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred eEEEccCCCCCC-CCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence 456777888884 444 4689999999999999888999999999999999999877888655556699999999999
Q ss_pred ccCCccCCcccCCCCCCCEEEcccCcCccccCcc--ccCCCCCCEEEccCCCCCCCCC-hhhhCcccccEEEecCCcCCC
Q 011044 138 NMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKE--IGNLTKLTRLNLRQNKLQGEIP-EELGNLAELEMLWLQNNSLTG 214 (495)
Q Consensus 138 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~--l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~ 214 (495)
|.+.+..|..|+++++|++|++++|.+++.+|.. +..+++|++|++++|.+.+..+ ..|+++++|++|++++|.+++
T Consensus 83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 9999888999999999999999999999866665 8999999999999999987654 579999999999999999998
Q ss_pred cCchhhhcC--CCCceeeCCCCcCCCCCCcccccccc------cceeeccCcccccccchhhhhC---------------
Q 011044 215 TIPSSIFSL--SSLLNLDLSLNNFTGIIPSSIGNLSS------LQKLYLSDNQLSGELPANIGNN--------------- 271 (495)
Q Consensus 215 ~~~~~l~~l--~~L~~L~Ls~n~l~~~~~~~l~~~~~------L~~L~l~~n~l~~~~~~~~~~~--------------- 271 (495)
..+..+..+ ++|+.|++++|.+.+..+..++.+.+ |+.|++++|.+++..+..+...
T Consensus 163 ~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~ 242 (844)
T 3j0a_A 163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI 242 (844)
T ss_dssp CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSC
T ss_pred eCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccc
Confidence 888888887 89999999999999888877777665 9999999998775554433211
Q ss_pred ----------------------CccccccccccceeeecccccccCCCCCCeeecccccccccCCccccCCCcCCEEeCc
Q 011044 272 ----------------------LPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLS 329 (495)
Q Consensus 272 ----------------------l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~ 329 (495)
.++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..|..+++|++|+++
T Consensus 243 ~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls 322 (844)
T 3j0a_A 243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLS 322 (844)
T ss_dssp CBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEE
T ss_pred ccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECC
Confidence 2579999999999998888899999999999999999998888899999999999999
Q ss_pred CCcccccCCcCccCCCCCcEEEccCCcCceecCCCCCCCCCChhhhhhhhcCCC
Q 011044 330 HNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFLWEYGRE 383 (495)
Q Consensus 330 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~ 383 (495)
+|.+.+..+..+..+++|+.|++++|.+. .++...+..+++|+.|++.+|...
T Consensus 323 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~ 375 (844)
T 3j0a_A 323 YNLLGELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNALT 375 (844)
T ss_dssp SCCCSCCCSCSCSSCTTCCEEECCSCCCC-CCCSSCSCSCCCCCEEEEETCCSC
T ss_pred CCCCCccCHHHhcCCCCCCEEECCCCCCC-ccChhhhcCCCCCCEEECCCCCCC
Confidence 99999888999999999999999999997 455555567888888888877654
No 25
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=9.2e-34 Score=281.73 Aligned_cols=309 Identities=21% Similarity=0.190 Sum_probs=261.6
Q ss_pred CCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEE
Q 011044 55 HRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLF 134 (495)
Q Consensus 55 ~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~ 134 (495)
.+++.|+++++.++...+..+..+++|++|++++|.+++..+..+.++++|++|++++|.+.+..|..+.. +++|++|+
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~ 123 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN-VPLLTVLV 123 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-CTTCCEEE
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcC-CCCCCEEE
Confidence 67899999999998766666899999999999999999888889999999999999999997655554544 99999999
Q ss_pred cccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCC
Q 011044 135 LKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTG 214 (495)
Q Consensus 135 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 214 (495)
+++|.++...+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+++. .+..+++|+.|++++|.+++
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~ 200 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST 200 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc
Confidence 999999954445578999999999999999988788899999999999999998854 36778999999999998863
Q ss_pred cCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeeccccccc
Q 011044 215 TIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIG 294 (495)
Q Consensus 215 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 294 (495)
+...++|++|++++|.+..... ...++|+.|++++|.+++. ..+. .+++|++|++++|.+.+..+..+.
T Consensus 201 -----~~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~ 269 (390)
T 3o6n_A 201 -----LAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLL-NYPGLVEVDLSYNELEKIMYHPFV 269 (390)
T ss_dssp -----EECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--GGGG-GCTTCSEEECCSSCCCEEESGGGT
T ss_pred -----cCCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc--HHHc-CCCCccEEECCCCcCCCcChhHcc
Confidence 2345689999999999886532 2357899999999999843 3344 789999999999999988889999
Q ss_pred CCCCCCeeecccccccccCCccccCCCcCCEEeCcCCcccccCCcCccCCCCCcEEEccCCcCceecCCCCCCCCCChhh
Q 011044 295 NLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEE 374 (495)
Q Consensus 295 ~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 374 (495)
.+++|+.|++++|++++ ++..+..+++|++|++++|++. .+|..+..+++|+.|++++|++.+ ++ ...+++|+.
T Consensus 270 ~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~-~~---~~~~~~L~~ 343 (390)
T 3o6n_A 270 KMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK---LSTHHTLKN 343 (390)
T ss_dssp TCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC---CCTTCCCSE
T ss_pred ccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccce-eC---chhhccCCE
Confidence 99999999999999985 5666778999999999999988 456677889999999999999973 44 335789999
Q ss_pred hhhhhcCCCc
Q 011044 375 LFLWEYGREG 384 (495)
Q Consensus 375 L~l~~~~~~~ 384 (495)
|++.+|...+
T Consensus 344 L~l~~N~~~~ 353 (390)
T 3o6n_A 344 LTLSHNDWDC 353 (390)
T ss_dssp EECCSSCEEH
T ss_pred EEcCCCCccc
Confidence 9998887553
No 26
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=7.6e-34 Score=293.24 Aligned_cols=311 Identities=22% Similarity=0.261 Sum_probs=257.2
Q ss_pred EEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEccc
Q 011044 58 AALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKY 137 (495)
Q Consensus 58 ~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~ 137 (495)
++|++++++++ .+|..+. ++|++|++++|.+++..|..+.++++|++|++++|.+.+..|..+.. +++|++|++++
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKF-NQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTT-CTTCCEEECCS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhc-ccCCCEEecCC
Confidence 57999999999 5676665 89999999999999877789999999999999999998766777765 99999999999
Q ss_pred ccCCccCCcccCCCCCCCEEEcccCcCcc-ccCccccCCCCCCEEEccCCCCCCCCChhhhCcccc--cEEEecCCcC--
Q 011044 138 NMFHGKIPSTLSSCKQLRELSLSSNYFSG-TIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAEL--EMLWLQNNSL-- 212 (495)
Q Consensus 138 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L--~~L~l~~n~l-- 212 (495)
|.++ .+|.. .+++|++|++++|.+++ .+|..++.+++|++|++++|.+.+ ..+..+++| +.|++++|.+
T Consensus 79 N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~ 152 (520)
T 2z7x_B 79 NKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYG 152 (520)
T ss_dssp SCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTT
T ss_pred Ccee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccc
Confidence 9998 56665 89999999999999987 478899999999999999999875 457778888 9999999998
Q ss_pred CCcCchhhhcCC--------------------------------------------------------------------
Q 011044 213 TGTIPSSIFSLS-------------------------------------------------------------------- 224 (495)
Q Consensus 213 ~~~~~~~l~~l~-------------------------------------------------------------------- 224 (495)
.+..|..+..+.
T Consensus 153 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l 232 (520)
T 2z7x_B 153 EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIET 232 (520)
T ss_dssp SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEE
T ss_pred cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhcccccccc
Confidence 555555554422
Q ss_pred ---------------CCceeeCCCCcCCCCCCccc-----ccccccceeeccCcccccccc-hhh---------------
Q 011044 225 ---------------SLLNLDLSLNNFTGIIPSSI-----GNLSSLQKLYLSDNQLSGELP-ANI--------------- 268 (495)
Q Consensus 225 ---------------~L~~L~Ls~n~l~~~~~~~l-----~~~~~L~~L~l~~n~l~~~~~-~~~--------------- 268 (495)
+|++|++++|.+++.+|..+ +.+++|+.+++++|.+ .+| ..+
T Consensus 233 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~ 310 (520)
T 2z7x_B 233 TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVS 310 (520)
T ss_dssp EHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEE
T ss_pred CHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcC
Confidence 56777777777776777666 6666666666666655 233 111
Q ss_pred ---------hhCCccccccccccceeeecccccccCCCCCCeeecccccccc--cCCccccCCCcCCEEeCcCCcccccC
Q 011044 269 ---------GNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQG--KIPHEIGNLRKLEWLMLSHNKLVGVV 337 (495)
Q Consensus 269 ---------~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~--~~~~~l~~l~~L~~L~l~~n~l~~~~ 337 (495)
...+++|++|++++|.+++..|..+..+++|+.|++++|++++ .+|..+..+++|++|++++|.+.+.+
T Consensus 311 ~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l 390 (520)
T 2z7x_B 311 GTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDE 390 (520)
T ss_dssp SSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCG
T ss_pred CCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCccc
Confidence 1367899999999999998889999999999999999999986 55677899999999999999999855
Q ss_pred Cc-CccCCCCCcEEEccCCcCceecCCCCCCCCCChhhhhhhhcCCC
Q 011044 338 PA-PIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFLWEYGRE 383 (495)
Q Consensus 338 ~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~ 383 (495)
|. .+..+++|+.|++++|++++.+|.... ++|+.|++..|...
T Consensus 391 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~---~~L~~L~Ls~N~l~ 434 (520)
T 2z7x_B 391 KKGDCSWTKSLLSLNMSSNILTDTIFRCLP---PRIKVLDLHSNKIK 434 (520)
T ss_dssp GGCSCCCCTTCCEEECCSSCCCGGGGGSCC---TTCCEEECCSSCCC
T ss_pred ccchhccCccCCEEECcCCCCCcchhhhhc---ccCCEEECCCCccc
Confidence 54 478899999999999999877765432 68999999998776
No 27
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=6.9e-33 Score=295.43 Aligned_cols=327 Identities=23% Similarity=0.215 Sum_probs=213.2
Q ss_pred CeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccc-----cCCh---hHhhcC
Q 011044 56 RVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFG-----ELPP---NFCNQM 127 (495)
Q Consensus 56 ~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~-----~~p~---~~~~~l 127 (495)
+++.|++++|.+++..+..|+.+++|++|++++|.+.+..|..+.++++|++|++++|...+ .+|. ..+..+
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l 328 (680)
T 1ziw_A 249 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL 328 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTC
T ss_pred CCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccC
Confidence 36666666666666666666666666666666666666666666666666666666554322 1221 122336
Q ss_pred CCCCEEEcccccCCccCCcccCCCCCCCEEEcccCcCcccc--CccccC--CCCCCEEEccCCCCCCCCChhhhCccccc
Q 011044 128 SNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTI--PKEIGN--LTKLTRLNLRQNKLQGEIPEELGNLAELE 203 (495)
Q Consensus 128 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~--~~~l~~--l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 203 (495)
++|++|++++|.+.+..+..|.++++|++|++++|.+.... ...+.. .++|++|++++|.+++..|..+..+++|+
T Consensus 329 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 408 (680)
T 1ziw_A 329 KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLE 408 (680)
T ss_dssp TTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCC
Confidence 67777777777776666666677777777777666543211 111222 24666777777777666666777777777
Q ss_pred EEEecCCcCCCcCc-hhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccc--cccchhhhhCCcccccccc
Q 011044 204 MLWLQNNSLTGTIP-SSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLS--GELPANIGNNLPSLQTLSL 280 (495)
Q Consensus 204 ~L~l~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~--~~~~~~~~~~l~~L~~L~L 280 (495)
.|++++|.+++.++ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+. +..|..+. .+++|+.|++
T Consensus 409 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~-~l~~L~~L~L 487 (680)
T 1ziw_A 409 VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ-PLRNLTILDL 487 (680)
T ss_dssp EEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTT-TCTTCCEEEC
T ss_pred EEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccc-cCCCCCEEEC
Confidence 77777777765554 56677777777777777777666666777777777777777664 34455444 6777777777
Q ss_pred ccceeeecccccccCCCCCCeeecccccccccCC--------ccccCCCcCCEEeCcCCcccccCCcCccCCCCCcEEEc
Q 011044 281 YVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIP--------HEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQL 352 (495)
Q Consensus 281 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~--------~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 352 (495)
++|.+++..+..+..+++|+.|++++|++++..+ ..|..+++|++|++++|++....+..|..+++|+.|++
T Consensus 488 s~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 567 (680)
T 1ziw_A 488 SNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDL 567 (680)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeEC
Confidence 7777776666667777777777777777764311 23667777777777777777544455777777788888
Q ss_pred cCCcCceecCCCCCCCCCChhhhhhhhcCCCc
Q 011044 353 HNNSLSGSLPSSADVPLPNLEELFLWEYGREG 384 (495)
Q Consensus 353 ~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~ 384 (495)
++|+++ .+|...+..+++|+.|++.+|...+
T Consensus 568 s~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~ 598 (680)
T 1ziw_A 568 GLNNLN-TLPASVFNNQVSLKSLNLQKNLITS 598 (680)
T ss_dssp CSSCCC-CCCTTTTTTCTTCCEEECTTSCCCB
T ss_pred CCCCCC-cCCHhHhCCCCCCCEEECCCCcCCc
Confidence 777777 5566555567777777777776554
No 28
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.1e-32 Score=289.22 Aligned_cols=142 Identities=23% Similarity=0.237 Sum_probs=125.2
Q ss_pred CCCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEE
Q 011044 54 SHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESL 133 (495)
Q Consensus 54 ~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L 133 (495)
+..+++|+|++|.|++..+..|.++++|++|+|++|.+++..+.+|.++++|++|+|++|.+. .+|...+..+++|++|
T Consensus 51 p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L~~L 129 (635)
T 4g8a_A 51 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKL 129 (635)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTCCEE
T ss_pred CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCCCEE
Confidence 468999999999999888889999999999999999999888888999999999999999985 5666655669999999
Q ss_pred EcccccCCccCCcccCCCCCCCEEEcccCcCcc-ccCccccCCCCCCEEEccCCCCCCCCChhh
Q 011044 134 FLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSG-TIPKEIGNLTKLTRLNLRQNKLQGEIPEEL 196 (495)
Q Consensus 134 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l 196 (495)
++++|.+++..+..|+++++|++|++++|.+++ ..|..++.+++|++|++++|.+++..+..+
T Consensus 130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l 193 (635)
T 4g8a_A 130 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 193 (635)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGG
T ss_pred ECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccc
Confidence 999999997767789999999999999999975 467888999999999999998876544443
No 29
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=6.5e-33 Score=288.84 Aligned_cols=313 Identities=27% Similarity=0.246 Sum_probs=245.3
Q ss_pred eEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcc
Q 011044 57 VAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLK 136 (495)
Q Consensus 57 l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~ 136 (495)
.++++++++++++ +|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+.+..|..+.. +++|++|+++
T Consensus 33 ~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~Ls 108 (562)
T 3a79_B 33 ESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLF-NQDLEYLDVS 108 (562)
T ss_dssp CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTT-CTTCCEEECT
T ss_pred CcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCC-CCCCCEEECC
Confidence 4899999999995 666554 89999999999999888889999999999999999997766666655 9999999999
Q ss_pred cccCCccCCcccCCCCCCCEEEcccCcCcc-ccCccccCCCCCCEEEccCCCCCCCCChhhhCcccc--cEEEecCCcC-
Q 011044 137 YNMFHGKIPSTLSSCKQLRELSLSSNYFSG-TIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAEL--EMLWLQNNSL- 212 (495)
Q Consensus 137 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L--~~L~l~~n~l- 212 (495)
+|.++ .+|.. .+++|++|++++|.+++ .+|..|+++++|++|++++|.+.+. .+..+++| +.|++++|.+
T Consensus 109 ~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~ 182 (562)
T 3a79_B 109 HNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYH 182 (562)
T ss_dssp TSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCC
T ss_pred CCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccccc
Confidence 99998 56665 89999999999999986 3468899999999999999999863 35555555 9999999988
Q ss_pred -CCcCchhhhcCC-------------------------------------------------------------------
Q 011044 213 -TGTIPSSIFSLS------------------------------------------------------------------- 224 (495)
Q Consensus 213 -~~~~~~~l~~l~------------------------------------------------------------------- 224 (495)
++..|..+..+.
T Consensus 183 ~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~ 262 (562)
T 3a79_B 183 IKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETT 262 (562)
T ss_dssp CCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEEC
T ss_pred ccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCc
Confidence 655555554432
Q ss_pred --------------CCceeeCCCCcCCCCCCccc----------------------------------------------
Q 011044 225 --------------SLLNLDLSLNNFTGIIPSSI---------------------------------------------- 244 (495)
Q Consensus 225 --------------~L~~L~Ls~n~l~~~~~~~l---------------------------------------------- 244 (495)
+|++|++++|.+.+.+|..+
T Consensus 263 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~ 342 (562)
T 3a79_B 263 WKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTP 342 (562)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSC
T ss_pred HHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCC
Confidence 67777777777776666544
Q ss_pred -------ccccccceeeccCcccccccchhhhhCCccccccccccceeee--cccccccCCCCCCeeecccccccccCCc
Q 011044 245 -------GNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSG--AIPKEIGNLTKLTDLYLDQNKLQGKIPH 315 (495)
Q Consensus 245 -------~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~i~~~~~~ 315 (495)
..+++|++|++++|.+++..|..+. .+++|+.|++++|.+++ .+|..+..+++|+.|++++|++++.+|.
T Consensus 343 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 421 (562)
T 3a79_B 343 FIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCS-TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYD 421 (562)
T ss_dssp CCCCCCCSSCCCCCEEECCSSCCCTTTTTTCC-SCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSS
T ss_pred cccccCccCCCCceEEECCCCccccchhhhhc-ccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccCh
Confidence 4566777788888877765665554 67788888888887775 3345677778888888888887763443
Q ss_pred -cccCCCcCCEEeCcCCcccccCCcCccCCCCCcEEEccCCcCceecCCCCCCCCCChhhhhhhhcCCCc
Q 011044 316 -EIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFLWEYGREG 384 (495)
Q Consensus 316 -~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~ 384 (495)
.+..+++|++|++++|++.+..+..+. ++|+.|++++|++. .+|...+ .+++|+.|++.+|....
T Consensus 422 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~-~l~~L~~L~L~~N~l~~ 487 (562)
T 3a79_B 422 RTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVT-HLQALQELNVASNQLKS 487 (562)
T ss_dssp CCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTT-SSCCCSEEECCSSCCCC
T ss_pred hhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhc-CCCCCCEEECCCCCCCC
Confidence 467778888888888887766655443 67888888888887 6777666 68889999888887763
No 30
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-32 Score=287.66 Aligned_cols=189 Identities=25% Similarity=0.277 Sum_probs=165.1
Q ss_pred hCcccccEEEecCCcCCCcC--chhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCcc
Q 011044 197 GNLAELEMLWLQNNSLTGTI--PSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPS 274 (495)
Q Consensus 197 ~~l~~L~~L~l~~n~l~~~~--~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~ 274 (495)
..+++|++|++++|.+++.. +..+..+++|++|++++|.+.+..+. +..+++|+.|++++|.+.+..+...+..+++
T Consensus 344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 422 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422 (570)
T ss_dssp CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTT
T ss_pred ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCC
Confidence 45678899999999887543 67889999999999999999876555 8899999999999999986666444458999
Q ss_pred ccccccccceeeecccccccCCCCCCeeeccccccc-ccCCccccCCCcCCEEeCcCCcccccCCcCccCCCCCcEEEcc
Q 011044 275 LQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQ-GKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLH 353 (495)
Q Consensus 275 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 353 (495)
|++|++++|.+.+..+..+..+++|+.|++++|.+. +.+|..+..+++|++|++++|++.+..|..+..+++|+.|+++
T Consensus 423 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 502 (570)
T 2z63_A 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMA 502 (570)
T ss_dssp CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCC
Confidence 999999999999889999999999999999999998 4688899999999999999999999989999999999999999
Q ss_pred CCcCceecCCCCCCCCCChhhhhhhhcCCCcccc
Q 011044 354 NNSLSGSLPSSADVPLPNLEELFLWEYGREGRVS 387 (495)
Q Consensus 354 ~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 387 (495)
+|++.+. +...+..+++|+.+++.+|...+..+
T Consensus 503 ~n~l~~~-~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 503 SNQLKSV-PDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp SSCCSCC-CTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCcCCCC-CHHHhhcccCCcEEEecCCcccCCCc
Confidence 9999855 44445578999999999998876544
No 31
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=3.5e-32 Score=265.94 Aligned_cols=304 Identities=23% Similarity=0.353 Sum_probs=254.3
Q ss_pred CCCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEE
Q 011044 54 SHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESL 133 (495)
Q Consensus 54 ~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L 133 (495)
.+++++|+++++.++.. +.+..+++|++|++++|.+++. +. +.++++|++|++++|.+.+ ++ .+. .+++|++|
T Consensus 43 l~~L~~L~l~~~~i~~~--~~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~-~~-~~~-~l~~L~~L 115 (347)
T 4fmz_A 43 LESITKLVVAGEKVASI--QGIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITD-IS-ALQ-NLTNLREL 115 (347)
T ss_dssp HTTCSEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-CG-GGT-TCTTCSEE
T ss_pred cccccEEEEeCCccccc--hhhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccC-ch-HHc-CCCcCCEE
Confidence 36899999999999754 3488999999999999999854 33 8999999999999999864 43 444 49999999
Q ss_pred EcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCC
Q 011044 134 FLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLT 213 (495)
Q Consensus 134 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 213 (495)
++++|.+.+. +. +..+++|++|++++|.....++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.
T Consensus 116 ~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~ 190 (347)
T 4fmz_A 116 YLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE 190 (347)
T ss_dssp ECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC
T ss_pred ECcCCcccCc-hh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc
Confidence 9999999853 33 8899999999999996664444 48899999999999999875433 889999999999999998
Q ss_pred CcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeecccccc
Q 011044 214 GTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEI 293 (495)
Q Consensus 214 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 293 (495)
+. +. +..+++|+.+++++|.+.+..+ +..+++|++|++++|.+++ ++. + ..+++|++|++++|.+++. ..+
T Consensus 191 ~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~-~~~-~-~~l~~L~~L~l~~n~l~~~--~~~ 261 (347)
T 4fmz_A 191 DI-SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD-LSP-L-ANLSQLTWLEIGTNQISDI--NAV 261 (347)
T ss_dssp CC-GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-G-TTCTTCCEEECCSSCCCCC--GGG
T ss_pred cc-cc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCC-Ccc-h-hcCCCCCEEECCCCccCCC--hhH
Confidence 54 33 8889999999999999987654 7889999999999999984 443 3 3789999999999998753 468
Q ss_pred cCCCCCCeeecccccccccCCccccCCCcCCEEeCcCCcccccCCcCccCCCCCcEEEccCCcCceecCCCCCCCCCChh
Q 011044 294 GNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLE 373 (495)
Q Consensus 294 ~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 373 (495)
..+++|+.|++++|.+++. ..+..+++|++|++++|++.+..+..+..+++|+.|++++|++.+..| ...+++|+
T Consensus 262 ~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~ 336 (347)
T 4fmz_A 262 KDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP---LASLSKMD 336 (347)
T ss_dssp TTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG---GGGCTTCS
T ss_pred hcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC---hhhhhccc
Confidence 8999999999999999854 458899999999999999998888889999999999999999986655 34688999
Q ss_pred hhhhhhcCCC
Q 011044 374 ELFLWEYGRE 383 (495)
Q Consensus 374 ~L~l~~~~~~ 383 (495)
++++.+|..+
T Consensus 337 ~L~l~~N~i~ 346 (347)
T 4fmz_A 337 SADFANQVIK 346 (347)
T ss_dssp EESSSCC---
T ss_pred eeehhhhccc
Confidence 9999887643
No 32
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3.7e-33 Score=290.09 Aligned_cols=318 Identities=24% Similarity=0.255 Sum_probs=204.4
Q ss_pred CCCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccc-cCChhHhhcCCCCCE
Q 011044 54 SHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFG-ELPPNFCNQMSNLES 132 (495)
Q Consensus 54 ~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~p~~~~~~l~~L~~ 132 (495)
.+++++|++++|.+++..|..|+++++|++|++++|.+++..+..+.++++|++|++++|.+.+ ..|..+.. +++|++
T Consensus 49 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~-l~~L~~ 127 (549)
T 2z81_A 49 CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN-LTNLQT 127 (549)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTT-CTTCCE
T ss_pred CCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhc-cCCccE
Confidence 4678888888888888877888888888888888888887766678888888888888888865 34444444 888888
Q ss_pred EEcccccCCccCC-cccCCCCCCCEEEcccCcCccccCccccCC------------------------CCCCEEEccCCC
Q 011044 133 LFLKYNMFHGKIP-STLSSCKQLRELSLSSNYFSGTIPKEIGNL------------------------TKLTRLNLRQNK 187 (495)
Q Consensus 133 L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l------------------------~~L~~L~L~~n~ 187 (495)
|++++|.+.+.++ ..+.++++|++|++++|.+++..|..++.+ ++|++|++++|.
T Consensus 128 L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 207 (549)
T 2z81_A 128 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTN 207 (549)
T ss_dssp EEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCB
T ss_pred EECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCc
Confidence 8888887444444 578888888888888888887777666554 455555555555
Q ss_pred CCCCC--Chh-----------------------------hhCc-------------------------------------
Q 011044 188 LQGEI--PEE-----------------------------LGNL------------------------------------- 199 (495)
Q Consensus 188 l~~~~--~~~-----------------------------l~~l------------------------------------- 199 (495)
+++.. +.. +..+
T Consensus 208 l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 287 (549)
T 2z81_A 208 LARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVT 287 (549)
T ss_dssp CTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEE
T ss_pred cccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccccccc
Confidence 54321 000 0001
Q ss_pred ----------------------ccccEEEecCCcCCCcCchhh-hcCCCCceeeCCCCcCCCCCC---ccccccccccee
Q 011044 200 ----------------------AELEMLWLQNNSLTGTIPSSI-FSLSSLLNLDLSLNNFTGIIP---SSIGNLSSLQKL 253 (495)
Q Consensus 200 ----------------------~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~---~~l~~~~~L~~L 253 (495)
++|+.|++++|.+. .+|..+ ..+++|++|++++|.+.+..| ..++.+++|+.|
T Consensus 288 l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L 366 (549)
T 2z81_A 288 IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTL 366 (549)
T ss_dssp EESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEE
T ss_pred ccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEE
Confidence 12333333333332 233333 346666666666666655432 224555666666
Q ss_pred eccCcccccccch--hhhhCCccccccccccceeeecccccccCCCCCCeeecccccccccCCccccCCCcCCEEeCcCC
Q 011044 254 YLSDNQLSGELPA--NIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHN 331 (495)
Q Consensus 254 ~l~~n~l~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n 331 (495)
++++|.+++ ++. .....+++|++|++++|.++ .+|..+..+++|++|++++|++++ ++..+ .++|++|++++|
T Consensus 367 ~Ls~N~l~~-~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N 441 (549)
T 2z81_A 367 VLSQNHLRS-MQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNN 441 (549)
T ss_dssp ECTTSCCCC-HHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS--CTTCSEEECCSS
T ss_pred EccCCcccc-cccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchh--cCCceEEECCCC
Confidence 666666652 221 12225666666666666665 455556666666666666666652 23221 246666666666
Q ss_pred cccccCCcCccCCCCCcEEEccCCcCceecCCCCCCCCCChhhhhhhhcCCCcc
Q 011044 332 KLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFLWEYGREGR 385 (495)
Q Consensus 332 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 385 (495)
++++.. ..+++|+.|++++|++. .+|... .+++|+.|++.+|...+.
T Consensus 442 ~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~~~--~l~~L~~L~Ls~N~l~~~ 488 (549)
T 2z81_A 442 NLDSFS----LFLPRLQELYISRNKLK-TLPDAS--LFPVLLVMKISRNQLKSV 488 (549)
T ss_dssp CCSCCC----CCCTTCCEEECCSSCCS-SCCCGG--GCTTCCEEECCSSCCCCC
T ss_pred Chhhhc----ccCChhcEEECCCCccC-cCCCcc--cCccCCEEecCCCccCCc
Confidence 665432 46889999999999997 777643 588999999998877653
No 33
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.5e-33 Score=269.65 Aligned_cols=249 Identities=32% Similarity=0.496 Sum_probs=188.7
Q ss_pred CCCCEEeCcCCcCCc--cCCccccCCCCCcEEEccC-CcccccCChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCC
Q 011044 79 SSLQALDLSFNWFYG--SIPSSIFNMSSLLSIYFNN-NTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLR 155 (495)
Q Consensus 79 ~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~l~~-n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 155 (495)
.++++|++++|.+.+ .+|..+.++++|++|++++ |.+.+.+|..+.. +++|++|++++|.+++.+|..+.++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~-l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK-LTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGG-CTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhc-CCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 578889999999888 7888888888899999885 8888888887766 88888888888888877888888888888
Q ss_pred EEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcc-cccEEEecCCcCCCcCchhhhcCCCCceeeCCCC
Q 011044 156 ELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLA-ELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLN 234 (495)
Q Consensus 156 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n 234 (495)
+|++++|.+++.+|..+..+++|++|++++|.+++.+|..+..++ +|++|++++|.+++.+|..+..++ |++|++++|
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN 207 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence 888888888878888888888888888888888877888888877 788888888888777777777776 888888888
Q ss_pred cCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeecccccccCCCCCCeeecccccccccCC
Q 011044 235 NFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIP 314 (495)
Q Consensus 235 ~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~ 314 (495)
.+++..|..+..+++|+.|++++|.+++..+. +. .+++|++|++++|.+++.+|..+..+++|+.|++++|++++.+|
T Consensus 208 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip 285 (313)
T 1ogq_A 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VG-LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285 (313)
T ss_dssp EEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CC-CCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred cccCcCCHHHhcCCCCCEEECCCCceeeecCc-cc-ccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCC
Confidence 77777777777777777777777777644443 22 45666666666666666666666666666666666666665555
Q ss_pred ccccCCCcCCEEeCcCCc
Q 011044 315 HEIGNLRKLEWLMLSHNK 332 (495)
Q Consensus 315 ~~l~~l~~L~~L~l~~n~ 332 (495)
.. ..+++|+.+++++|+
T Consensus 286 ~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 286 QG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp CS-TTGGGSCGGGTCSSS
T ss_pred CC-ccccccChHHhcCCC
Confidence 43 555666666666664
No 34
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=9.7e-32 Score=273.39 Aligned_cols=303 Identities=29% Similarity=0.411 Sum_probs=220.5
Q ss_pred CCCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEE
Q 011044 54 SHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESL 133 (495)
Q Consensus 54 ~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L 133 (495)
.+++++|++++|.+++..+ +.++++|++|++++|.+.+..+ +.++++|++|++++|.+.+. +. + ..+++|++|
T Consensus 67 l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~-~~-~-~~l~~L~~L 139 (466)
T 1o6v_A 67 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI-DP-L-KNLTNLNRL 139 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GG-G-TTCTTCSEE
T ss_pred hcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCC-hH-H-cCCCCCCEE
Confidence 4689999999999986643 8899999999999999886544 88999999999999988654 33 3 448999999
Q ss_pred EcccccCCccCCc--------------------ccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCC
Q 011044 134 FLKYNMFHGKIPS--------------------TLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIP 193 (495)
Q Consensus 134 ~l~~n~l~~~~~~--------------------~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 193 (495)
++++|.+.+ ++. .+.++++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+
T Consensus 140 ~l~~n~l~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~ 216 (466)
T 1o6v_A 140 ELSSNTISD-ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP 216 (466)
T ss_dssp EEEEEEECC-CGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG
T ss_pred ECCCCccCC-ChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc
Confidence 999988764 221 244556666666666666532 236666777777777776665433
Q ss_pred hhhhCcccccEEEecCCcCCCcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCc
Q 011044 194 EELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLP 273 (495)
Q Consensus 194 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~ 273 (495)
++.+++|+.|++++|.+++. ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++. +. +. .++
T Consensus 217 --~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~-~l~ 287 (466)
T 1o6v_A 217 --LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI-SP-LA-GLT 287 (466)
T ss_dssp --GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCC-GG-GT-TCT
T ss_pred --ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcc-cc-cc-CCC
Confidence 56677777777777776642 356677777777777777776544 67777788888888877643 32 33 677
Q ss_pred cccccccccceeeecccccccCCCCCCeeecccccccccCCccccCCCcCCEEeCcCCcccccCCcCccCCCCCcEEEcc
Q 011044 274 SLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLH 353 (495)
Q Consensus 274 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 353 (495)
+|+.|++++|.+.+..+ +..+++|+.|++++|++++..+ +..+++|++|++++|++.+. ..+..+++|+.|+++
T Consensus 288 ~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~ 361 (466)
T 1o6v_A 288 ALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAG 361 (466)
T ss_dssp TCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECC
T ss_pred ccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCC
Confidence 88888888887775433 6777888888888888876544 66788888888888887754 467788888888888
Q ss_pred CCcCceecCCCCCCCCCChhhhhhhhcCCCc
Q 011044 354 NNSLSGSLPSSADVPLPNLEELFLWEYGREG 384 (495)
Q Consensus 354 ~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~ 384 (495)
+|++.+..| ...+++|+.|++.+|...+
T Consensus 362 ~n~l~~~~~---~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 362 HNQISDLTP---LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp SSCCCBCGG---GTTCTTCCEEECCCEEEEC
T ss_pred CCccCccch---hhcCCCCCEEeccCCcccC
Confidence 888887666 3467888888888777655
No 35
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=2e-31 Score=258.67 Aligned_cols=288 Identities=23% Similarity=0.315 Sum_probs=202.6
Q ss_pred eEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcc
Q 011044 57 VAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLK 136 (495)
Q Consensus 57 l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~ 136 (495)
++.++++++.++ .+|..+ .++|++|++++|.+++..+..+.++++|++|++++|.+.+..|..+.. +++|++|+++
T Consensus 33 l~~l~~~~~~l~-~lp~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~Ls 108 (330)
T 1xku_A 33 LRVVQCSDLGLE-KVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAP-LVKLERLYLS 108 (330)
T ss_dssp TTEEECTTSCCC-SCCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTT-CTTCCEEECC
T ss_pred CeEEEecCCCcc-ccCccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcC-CCCCCEEECC
Confidence 445555666665 344333 257777777777777666667777777777777777776555655554 7778888887
Q ss_pred cccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCC--CCChhhhCcccccEEEecCCcCCC
Q 011044 137 YNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQG--EIPEELGNLAELEMLWLQNNSLTG 214 (495)
Q Consensus 137 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~~ 214 (495)
+|.++ .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+.. ..+..+.++++|++|++++|.++
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~- 184 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT- 184 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-
T ss_pred CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-
Confidence 77776 4454443 677888888887776666667777888888888777753 45666777788888888888776
Q ss_pred cCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeeccccccc
Q 011044 215 TIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIG 294 (495)
Q Consensus 215 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 294 (495)
.+|..+. ++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+. .+++|++|++++|.++ .+|..+.
T Consensus 185 ~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~-~lp~~l~ 260 (330)
T 1xku_A 185 TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA-NTPHLRELHLNNNKLV-KVPGGLA 260 (330)
T ss_dssp SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG-GSTTCCEEECCSSCCS-SCCTTTT
T ss_pred cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhcc-CCCCCCEEECCCCcCc-cCChhhc
Confidence 3444433 6788888888888777777777888888888888887754444444 6778888888888877 6677778
Q ss_pred CCCCCCeeecccccccccCCccccC------CCcCCEEeCcCCcccc--cCCcCccCCCCCcEEEccCCc
Q 011044 295 NLTKLTDLYLDQNKLQGKIPHEIGN------LRKLEWLMLSHNKLVG--VVPAPIFNLSTLISLQLHNNS 356 (495)
Q Consensus 295 ~l~~L~~L~L~~n~i~~~~~~~l~~------l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~ 356 (495)
.+++|++|++++|++++..+..|.. .+.|+.|++++|++.. ..|..+..+.+++.+++++|+
T Consensus 261 ~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 261 DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp TCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 8888888888888887655555533 3678888888888753 455677788888888888874
No 36
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.98 E-value=2.1e-31 Score=258.72 Aligned_cols=288 Identities=23% Similarity=0.315 Sum_probs=227.1
Q ss_pred CeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEc
Q 011044 56 RVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFL 135 (495)
Q Consensus 56 ~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l 135 (495)
+++.+++++++++ .+|..+ .++|++|++++|.+++..+..+.++++|++|++++|.+.+..|..+.. +++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSP-LRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTT-CTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhC-cCCCCEEEC
Confidence 3556777777776 455544 368899999999888777778888999999999999887665666655 889999999
Q ss_pred ccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCC--CCCChhhhCcccccEEEecCCcCC
Q 011044 136 KYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQ--GEIPEELGNLAELEMLWLQNNSLT 213 (495)
Q Consensus 136 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~l~~n~l~ 213 (495)
++|.++ .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.++ +..+..+..+ +|++|++++|.++
T Consensus 110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 999887 5565554 78999999999888666667888899999999999885 3566667777 8999999999887
Q ss_pred CcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeecccccc
Q 011044 214 GTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEI 293 (495)
Q Consensus 214 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 293 (495)
+ +|..+. ++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+. .+++|+.|++++|.++ .+|..+
T Consensus 186 ~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~-~lp~~l 260 (332)
T 2ft3_A 186 G-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS-FLPTLRELHLDNNKLS-RVPAGL 260 (332)
T ss_dssp S-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG-GCTTCCEEECCSSCCC-BCCTTG
T ss_pred c-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhh-CCCCCCEEECCCCcCe-ecChhh
Confidence 4 555443 7899999999999888878888899999999999998855444554 7889999999999888 677778
Q ss_pred cCCCCCCeeecccccccccCCccccC------CCcCCEEeCcCCccc--ccCCcCccCCCCCcEEEccCCc
Q 011044 294 GNLTKLTDLYLDQNKLQGKIPHEIGN------LRKLEWLMLSHNKLV--GVVPAPIFNLSTLISLQLHNNS 356 (495)
Q Consensus 294 ~~l~~L~~L~L~~n~i~~~~~~~l~~------l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~ 356 (495)
..+++|+.|++++|++++..+..|.. ...|+.|++++|++. +..+..+..+++|+.+++++|+
T Consensus 261 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 261 PDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred hcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 88999999999999998765555554 367899999999877 5667778889999999998874
No 37
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.98 E-value=4.3e-31 Score=256.32 Aligned_cols=283 Identities=22% Similarity=0.282 Sum_probs=197.4
Q ss_pred CCCccceeeeCCC---------CCCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEcc
Q 011044 41 SFCYWTGVTCDVR---------SHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFN 111 (495)
Q Consensus 41 ~~c~w~gv~c~~~---------~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 111 (495)
+.|.|+.+.|... ++.++.|++++|.+++..+..|+++++|++|++++|.+++..|..+.++++|++|+++
T Consensus 29 c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 29 CQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp CEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 3466777766431 3567777888777777666677777788888888777776667777777788888887
Q ss_pred CCcccccCChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCCEEEcccCcCcc--ccCccccCCCCCCEEEccCCCCC
Q 011044 112 NNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSG--TIPKEIGNLTKLTRLNLRQNKLQ 189 (495)
Q Consensus 112 ~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~ 189 (495)
+|.+. .+|..+ .++|++|++++|.+++..+..+.++++|++|++++|.+.. ..+..+..+++|++|++++|.++
T Consensus 109 ~n~l~-~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 109 KNQLK-ELPEKM---PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp SSCCS-BCCSSC---CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCcCC-ccChhh---cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 77774 555544 3677778888777776666667777778888887777753 55666777777888888777776
Q ss_pred CCCChhhhCcccccEEEecCCcCCCcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhh
Q 011044 190 GEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIG 269 (495)
Q Consensus 190 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~ 269 (495)
.+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|..+.
T Consensus 185 -~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~ 260 (330)
T 1xku_A 185 -TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA 260 (330)
T ss_dssp -SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTT
T ss_pred -cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhc
Confidence 3444332 67777888877777666777777777888888877777766666777777888888877776 6666554
Q ss_pred hCCccccccccccceeeecccccccC------CCCCCeeecccccccc--cCCccccCCCcCCEEeCcCCc
Q 011044 270 NNLPSLQTLSLYVNDFSGAIPKEIGN------LTKLTDLYLDQNKLQG--KIPHEIGNLRKLEWLMLSHNK 332 (495)
Q Consensus 270 ~~l~~L~~L~L~~n~l~~~~~~~l~~------l~~L~~L~L~~n~i~~--~~~~~l~~l~~L~~L~l~~n~ 332 (495)
.+++|++|++++|.+++..+..+.. .+.++.|++++|++.. ..|..|..+++++.+++++|+
T Consensus 261 -~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 261 -DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp -TCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred -cCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 6777777888777777554444432 3567777777777653 345567777777777777764
No 38
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.98 E-value=3.4e-31 Score=257.30 Aligned_cols=267 Identities=23% Similarity=0.305 Sum_probs=140.2
Q ss_pred CCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEE
Q 011044 55 HRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLF 134 (495)
Q Consensus 55 ~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~ 134 (495)
++++.|++++|.+++..+..|.++++|++|++++|.+++..|..+.++++|++|++++|.+. .+|..+. ++|++|+
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~---~~L~~L~ 129 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP---SSLVELR 129 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC---TTCCEEE
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc---ccCCEEE
Confidence 34555555555555554555555555555555555555555555555555555555555553 4444332 4555555
Q ss_pred cccccCCccCCcccCCCCCCCEEEcccCcCc--cccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcC
Q 011044 135 LKYNMFHGKIPSTLSSCKQLRELSLSSNYFS--GTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSL 212 (495)
Q Consensus 135 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 212 (495)
+++|.+....+..+.++++|++|++++|.++ +..+..+..+ +|++|++++|.+++ +|..+. ++|++|++++|.+
T Consensus 130 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i 205 (332)
T 2ft3_A 130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKI 205 (332)
T ss_dssp CCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCC
T ss_pred CCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcC
Confidence 5555555444444555555555555555553 2334444444 55555555555553 333222 4555555555555
Q ss_pred CCcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeeccccc
Q 011044 213 TGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKE 292 (495)
Q Consensus 213 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 292 (495)
++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.++ .+|..+. .+++|+.|++++|.+++..+..
T Consensus 206 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~-~l~~L~~L~l~~N~l~~~~~~~ 283 (332)
T 2ft3_A 206 QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLP-DLKLLQVVYLHTNNITKVGVND 283 (332)
T ss_dssp CCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGG-GCTTCCEEECCSSCCCBCCTTS
T ss_pred CccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhh-cCccCCEEECCCCCCCccChhH
Confidence 5444455555555555555555555555545555555555555555555 4554443 4555555555555555433333
Q ss_pred ccC------CCCCCeeeccccccc--ccCCccccCCCcCCEEeCcCC
Q 011044 293 IGN------LTKLTDLYLDQNKLQ--GKIPHEIGNLRKLEWLMLSHN 331 (495)
Q Consensus 293 l~~------l~~L~~L~L~~n~i~--~~~~~~l~~l~~L~~L~l~~n 331 (495)
+.. .+.|+.|++++|++. +..+..|..+++|+.+++++|
T Consensus 284 ~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 284 FCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp SSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred ccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 322 244555555555554 334445555555555555554
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.98 E-value=4e-31 Score=262.70 Aligned_cols=286 Identities=23% Similarity=0.246 Sum_probs=250.5
Q ss_pred CCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEE
Q 011044 55 HRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLF 134 (495)
Q Consensus 55 ~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~ 134 (495)
+++++|++++|.+++..+..|..+++|++|++++|.+++..|..+.++++|++|++++|.+. .+|..++..+++|++|+
T Consensus 69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~ 147 (390)
T 3o6n_A 69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLS 147 (390)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEE
Confidence 68999999999999888889999999999999999999888888999999999999999995 77777666699999999
Q ss_pred cccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCC
Q 011044 135 LKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTG 214 (495)
Q Consensus 135 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 214 (495)
+++|.+.+..+..+..+++|++|++++|.+++. .+..+++|++|++++|.+.+ +...++|++|++++|.+..
T Consensus 148 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~ 219 (390)
T 3o6n_A 148 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINV 219 (390)
T ss_dssp CCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCCE
T ss_pred CCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc-----cCCCCcceEEECCCCeeee
Confidence 999999987788899999999999999999864 36678999999999998763 3455789999999999984
Q ss_pred cCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeeccccccc
Q 011044 215 TIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIG 294 (495)
Q Consensus 215 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 294 (495)
. +. ...++|+.|++++|.+++. ..+..+++|++|++++|.+.+..+..+. .+++|++|++++|.+++ ++..+.
T Consensus 220 ~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~-~~~~~~ 292 (390)
T 3o6n_A 220 V-RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFV-KMQRLERLYISNNRLVA-LNLYGQ 292 (390)
T ss_dssp E-EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGT-TCSSCCEEECCSSCCCE-EECSSS
T ss_pred c-cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcc-ccccCCEEECCCCcCcc-cCcccC
Confidence 4 33 2357999999999999865 4688999999999999999976676665 79999999999999985 456677
Q ss_pred CCCCCCeeecccccccccCCccccCCCcCCEEeCcCCcccccCCcCccCCCCCcEEEccCCcCcee
Q 011044 295 NLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGS 360 (495)
Q Consensus 295 ~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 360 (495)
.+++|+.|++++|++. .+|..+..+++|++|++++|++... .+..+++|+.|++++|++.+.
T Consensus 293 ~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~---~~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 293 PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL---KLSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp CCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC---CCCTTCCCSEEECCSSCEEHH
T ss_pred CCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee---CchhhccCCEEEcCCCCccch
Confidence 8999999999999998 5677788999999999999999854 367889999999999998743
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.98 E-value=6.3e-31 Score=257.07 Aligned_cols=282 Identities=28% Similarity=0.421 Sum_probs=241.3
Q ss_pred CCCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEE
Q 011044 54 SHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESL 133 (495)
Q Consensus 54 ~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L 133 (495)
.+++++|++++|.+++.. . +..+++|++|++++|.+++ + ..+.++++|++|++++|.+.+ ++. + ..+++|++|
T Consensus 65 ~~~L~~L~l~~n~i~~~~-~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~l~~n~i~~-~~~-~-~~l~~L~~L 137 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITDIS-P-LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRELYLNEDNISD-ISP-L-ANLTKMYSL 137 (347)
T ss_dssp CTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEEECTTSCCCC-CGG-G-TTCTTCCEE
T ss_pred cCCccEEEccCCccccch-h-hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEEECcCCcccC-chh-h-ccCCceeEE
Confidence 478999999999998653 3 9999999999999999985 3 368999999999999999864 444 4 449999999
Q ss_pred EcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCC
Q 011044 134 FLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLT 213 (495)
Q Consensus 134 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 213 (495)
++++|.....+ ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+. +. +..+++|+.|++++|.++
T Consensus 138 ~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~ 212 (347)
T 4fmz_A 138 NLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI-SP-LASLTSLHYFTAYVNQIT 212 (347)
T ss_dssp ECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCC
T ss_pred ECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccc-cc-ccCCCccceeecccCCCC
Confidence 99999766444 448999999999999999885433 88999999999999999854 33 889999999999999998
Q ss_pred CcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeecccccc
Q 011044 214 GTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEI 293 (495)
Q Consensus 214 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 293 (495)
+..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.+++ ++ .+. .+++|++|++++|.+++. ..+
T Consensus 213 ~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~-~l~~L~~L~l~~n~l~~~--~~~ 283 (347)
T 4fmz_A 213 DITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-IN-AVK-DLTKLKMLNVGSNQISDI--SVL 283 (347)
T ss_dssp CCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GGT-TCTTCCEEECCSSCCCCC--GGG
T ss_pred CCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-Ch-hHh-cCCCcCEEEccCCccCCC--hhh
Confidence 5543 8899999999999999987654 8899999999999999984 43 333 789999999999999854 468
Q ss_pred cCCCCCCeeecccccccccCCccccCCCcCCEEeCcCCcccccCCcCccCCCCCcEEEccCCcCc
Q 011044 294 GNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLS 358 (495)
Q Consensus 294 ~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 358 (495)
..+++|+.|++++|++.+..+..++.+++|++|++++|++.+..| +..+++|+.|++++|+++
T Consensus 284 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 284 NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp GGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred cCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 899999999999999998888889999999999999999987665 889999999999999875
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=7.2e-31 Score=275.02 Aligned_cols=286 Identities=23% Similarity=0.255 Sum_probs=251.7
Q ss_pred CCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEE
Q 011044 55 HRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLF 134 (495)
Q Consensus 55 ~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~ 134 (495)
++|+.|+|++|.+++..+..|+.+++|++|+|++|.+++..|..|.++++|++|++++|.+. .+|..++..+++|++|+
T Consensus 75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~ 153 (597)
T 3oja_B 75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLS 153 (597)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCEEE
Confidence 68999999999999988889999999999999999999888888999999999999999996 67777656699999999
Q ss_pred cccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCC
Q 011044 135 LKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTG 214 (495)
Q Consensus 135 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 214 (495)
+++|.+++..|..|..+++|++|++++|.+++. .++.+++|++|++++|.+.+ +...++|+.|++++|.++.
T Consensus 154 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~ 225 (597)
T 3oja_B 154 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINV 225 (597)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCE
T ss_pred eeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCcccc
Confidence 999999988888999999999999999999864 35678999999999998863 3456789999999999874
Q ss_pred cCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeeccccccc
Q 011044 215 TIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIG 294 (495)
Q Consensus 215 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 294 (495)
. +..+ .++|+.|++++|.+++. ..+..+++|+.|++++|.+.+..|..+. .+++|+.|++++|.+++ ++..+.
T Consensus 226 ~-~~~~--~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~-l~~~~~ 298 (597)
T 3oja_B 226 V-RGPV--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFV-KMQRLERLYISNNRLVA-LNLYGQ 298 (597)
T ss_dssp E-ECSC--CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGT-TCSSCCEEECTTSCCCE-EECSSS
T ss_pred c-cccc--CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhc-CccCCCEEECCCCCCCC-CCcccc
Confidence 3 3222 36899999999999874 5688999999999999999977777776 89999999999999985 566678
Q ss_pred CCCCCCeeecccccccccCCccccCCCcCCEEeCcCCcccccCCcCccCCCCCcEEEccCCcCcee
Q 011044 295 NLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGS 360 (495)
Q Consensus 295 ~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 360 (495)
.+++|+.|+|++|.+. .+|..+..+++|+.|++++|.+.+. .+..+++|+.|++++|++.+.
T Consensus 299 ~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~---~~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 299 PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL---KLSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp CCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC---CCCTTCCCSEEECCSSCEEHH
T ss_pred cCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc---ChhhcCCCCEEEeeCCCCCCh
Confidence 8999999999999998 6778888999999999999999864 367889999999999998743
No 42
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=1.8e-30 Score=264.00 Aligned_cols=304 Identities=30% Similarity=0.423 Sum_probs=213.4
Q ss_pred CCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEE
Q 011044 55 HRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLF 134 (495)
Q Consensus 55 ~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~ 134 (495)
++++.|++.++.++. ++ .+..+++|++|++++|.+++..+ +.++++|++|++++|.+.+..+ + ..+++|++|+
T Consensus 46 ~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~-~~l~~L~~L~ 118 (466)
T 1o6v_A 46 DQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--L-ANLTNLTGLT 118 (466)
T ss_dssp HTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--G-TTCTTCCEEE
T ss_pred ccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--h-cCCCCCCEEE
Confidence 579999999999875 44 48899999999999999986544 8999999999999999965544 4 4499999999
Q ss_pred cccccCCccCCcccCCCCCCCEEEcccCcCccccCc--------------------cccCCCCCCEEEccCCCCCCCCCh
Q 011044 135 LKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPK--------------------EIGNLTKLTRLNLRQNKLQGEIPE 194 (495)
Q Consensus 135 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~--------------------~l~~l~~L~~L~L~~n~l~~~~~~ 194 (495)
+++|.+++. +. +.++++|++|++++|.+.+. +. .+..+++|++|++++|.+.+. .
T Consensus 119 L~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~ 193 (466)
T 1o6v_A 119 LFNNQITDI-DP-LKNLTNLNRLELSSNTISDI-SALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--S 193 (466)
T ss_dssp CCSSCCCCC-GG-GTTCTTCSEEEEEEEEECCC-GGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--G
T ss_pred CCCCCCCCC-hH-HcCCCCCCEEECCCCccCCC-hhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--h
Confidence 999999854 33 89999999999999988743 21 134455566666666665532 2
Q ss_pred hhhCcccccEEEecCCcCCCcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCcc
Q 011044 195 ELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPS 274 (495)
Q Consensus 195 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~ 274 (495)
.+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+. ..+..+++|+.|++++|.+.+..+ +. .+++
T Consensus 194 ~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~-~l~~ 266 (466)
T 1o6v_A 194 VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LS-GLTK 266 (466)
T ss_dssp GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GT-TCTT
T ss_pred hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hh-cCCC
Confidence 35566666666666666654333 55566666666666666543 245666677777777776664333 22 5677
Q ss_pred ccccccccceeeecccccccCCCCCCeeecccccccccCCccccCCCcCCEEeCcCCcccccCCcCccCCCCCcEEEccC
Q 011044 275 LQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHN 354 (495)
Q Consensus 275 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 354 (495)
|+.|++++|.+++..+ +..+++|+.|++++|++.+..+ ++.+++|+.|++++|++.+..+ +..+++|+.|++++
T Consensus 267 L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~ 340 (466)
T 1o6v_A 267 LTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYN 340 (466)
T ss_dssp CSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCS
T ss_pred CCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCC
Confidence 7777777777764333 6667777777777777765332 6677777777777777776544 56777777777777
Q ss_pred CcCceecCCCCCCCCCChhhhhhhhcCCCccc
Q 011044 355 NSLSGSLPSSADVPLPNLEELFLWEYGREGRV 386 (495)
Q Consensus 355 n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 386 (495)
|++.+. + ....+++|+.|++.+|...+..
T Consensus 341 n~l~~~-~--~l~~l~~L~~L~l~~n~l~~~~ 369 (466)
T 1o6v_A 341 NKVSDV-S--SLANLTNINWLSAGHNQISDLT 369 (466)
T ss_dssp SCCCCC-G--GGTTCTTCCEEECCSSCCCBCG
T ss_pred CccCCc-h--hhccCCCCCEEeCCCCccCccc
Confidence 777643 2 2335777888888777765443
No 43
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=2.3e-30 Score=261.52 Aligned_cols=206 Identities=20% Similarity=0.214 Sum_probs=111.2
Q ss_pred CCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEE
Q 011044 55 HRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLF 134 (495)
Q Consensus 55 ~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~ 134 (495)
+++++|++++|.+++. | .++.+++|++|++++|.+++. | +..+++|++|++++|.+.+ ++ + ..+++|++|+
T Consensus 42 ~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~--~-~~l~~L~~L~ 112 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD--V-TPLTKLTYLN 112 (457)
T ss_dssp TTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC--C-TTCTTCCEEE
T ss_pred CCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee--c-CCCCcCCEEE
Confidence 4566666666666543 2 456666666666666666542 2 5566666666666666543 22 2 2366666666
Q ss_pred cccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCC
Q 011044 135 LKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTG 214 (495)
Q Consensus 135 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 214 (495)
+++|.+++ ++ ++.+++|++|++++|.+++. .++.+++|++|++++|...+.+ .+..+++|+.|++++|.+++
T Consensus 113 L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~ 184 (457)
T 3bz5_A 113 CDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE 184 (457)
T ss_dssp CCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC
T ss_pred CCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce
Confidence 66666654 22 55666666666666666542 2455555566666555433333 24555555555555555553
Q ss_pred cCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeee
Q 011044 215 TIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSG 287 (495)
Q Consensus 215 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 287 (495)
+| +..+++|+.|++++|.+++. .++.+++|+.|++++|++++ +| +. .+++|+.|++++|.+++
T Consensus 185 -l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~-~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 185 -LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VT-PLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp -CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CT-TCTTCSEEECCSSCCSC
T ss_pred -ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--cc-ccCCCCEEEeeCCcCCC
Confidence 22 44555555555555555543 24455555555555555553 33 22 44555555555555544
No 44
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=3.4e-29 Score=253.03 Aligned_cols=276 Identities=21% Similarity=0.175 Sum_probs=230.4
Q ss_pred CCCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEE
Q 011044 54 SHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESL 133 (495)
Q Consensus 54 ~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L 133 (495)
.+++++|++++|.+++. + ++.+++|++|++++|.+++. + +.++++|++|++++|.+.+ +| + ..+++|++|
T Consensus 63 l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~-~~l~~L~~L 132 (457)
T 3bz5_A 63 LTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--V-SQNPLLTYL 132 (457)
T ss_dssp CTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--C-TTCTTCCEE
T ss_pred cCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--C-CCCCcCCEE
Confidence 47899999999999975 3 89999999999999999864 3 8899999999999999975 55 3 449999999
Q ss_pred EcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCC
Q 011044 134 FLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLT 213 (495)
Q Consensus 134 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 213 (495)
++++|.+++. .++.+++|++|++++|...+.+ .+..+++|++|++++|.+++ +| +..+++|+.|++++|.++
T Consensus 133 ~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~ 204 (457)
T 3bz5_A 133 NCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNIT 204 (457)
T ss_dssp ECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCS
T ss_pred ECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCC
Confidence 9999999963 3889999999999999665555 47889999999999999986 45 889999999999999998
Q ss_pred CcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCc-------cccccccccceee
Q 011044 214 GTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLP-------SLQTLSLYVNDFS 286 (495)
Q Consensus 214 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~-------~L~~L~L~~n~l~ 286 (495)
+. .+..+++|++|++++|.+++ +| ++.+++|+.|++++|.+++..+..+. .+. +|+.|++++|.+.
T Consensus 205 ~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~-~L~~L~l~~n~L~~L~l~~n~~~ 277 (457)
T 3bz5_A 205 KL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLS-KLTTLHCIQTDLLEIDLTHNTQL 277 (457)
T ss_dssp CC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCT-TCCEEECTTCCCSCCCCTTCTTC
T ss_pred ee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCC-CCCEEeccCCCCCEEECCCCccC
Confidence 64 38889999999999999998 44 78999999999999999854332221 232 4566777777666
Q ss_pred ecccccccCCCCCCeeecccccccccCCc--------cccCCCcCCEEeCcCCcccccCCcCccCCCCCcEEEccCCcCc
Q 011044 287 GAIPKEIGNLTKLTDLYLDQNKLQGKIPH--------EIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLS 358 (495)
Q Consensus 287 ~~~~~~l~~l~~L~~L~L~~n~i~~~~~~--------~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 358 (495)
+.+| +..+++|+.|++++|...+.+|. .+..+++|++|++++|++++. .+..+++|+.|++++|++.
T Consensus 278 ~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~ 352 (457)
T 3bz5_A 278 IYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQ 352 (457)
T ss_dssp CEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCC
T ss_pred Cccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCC
Confidence 5555 46789999999999986654443 356778999999999999974 3889999999999999998
Q ss_pred e
Q 011044 359 G 359 (495)
Q Consensus 359 ~ 359 (495)
+
T Consensus 353 ~ 353 (457)
T 3bz5_A 353 D 353 (457)
T ss_dssp B
T ss_pred C
Confidence 5
No 45
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=7.2e-29 Score=262.12 Aligned_cols=157 Identities=25% Similarity=0.323 Sum_probs=131.6
Q ss_pred EEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEccccc
Q 011044 60 LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNM 139 (495)
Q Consensus 60 L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~ 139 (495)
.+-++.+++ .+|..+. +++++|+|++|.|++..+.+|.++++|++|+|++|.+. .+|+..+..+++|++|+|++|+
T Consensus 36 ~~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~ 111 (635)
T 4g8a_A 36 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNP 111 (635)
T ss_dssp EECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCC
T ss_pred EECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCc
Confidence 455556676 5565442 47999999999999877889999999999999999996 4555544559999999999999
Q ss_pred CCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCC-CCChhhhCcccccEEEecCCcCCCcCch
Q 011044 140 FHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQG-EIPEELGNLAELEMLWLQNNSLTGTIPS 218 (495)
Q Consensus 140 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 218 (495)
+++..+..|.++++|++|++++|.+++..+..|+++++|++|++++|.+.+ ..|..++.+++|++|++++|.+++..+.
T Consensus 112 l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 191 (635)
T 4g8a_A 112 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 191 (635)
T ss_dssp CCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred CCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccc
Confidence 997777789999999999999999997777789999999999999999875 4678889999999999999988754444
Q ss_pred hh
Q 011044 219 SI 220 (495)
Q Consensus 219 ~l 220 (495)
.+
T Consensus 192 ~l 193 (635)
T 4g8a_A 192 DL 193 (635)
T ss_dssp GG
T ss_pred cc
Confidence 33
No 46
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=1.1e-29 Score=243.79 Aligned_cols=253 Identities=24% Similarity=0.277 Sum_probs=182.7
Q ss_pred CCCccceeeeCCCCCCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCccc--cc
Q 011044 41 SFCYWTGVTCDVRSHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLF--GE 118 (495)
Q Consensus 41 ~~c~w~gv~c~~~~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~--~~ 118 (495)
+.|.|+++.|.. ++++ .+|..+ .++|++|++++|.++...+..+.++++|++|++++|.+. +.
T Consensus 5 C~C~~~~l~c~~------------~~l~-~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~ 69 (306)
T 2z66_A 5 CSCSGTEIRCNS------------KGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGC 69 (306)
T ss_dssp CEEETTEEECCS------------SCCS-SCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEE
T ss_pred CeeCCCEEEcCC------------CCcc-cCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccC
Confidence 457888887754 3343 333322 367888888888887444455788888888888888875 23
Q ss_pred CChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCCEEEcccCcCccccC-ccccCCCCCCEEEccCCCCCCCCChhhh
Q 011044 119 LPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIP-KEIGNLTKLTRLNLRQNKLQGEIPEELG 197 (495)
Q Consensus 119 ~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~ 197 (495)
.+..+.. +++|++|++++|.+. .++..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+.
T Consensus 70 ~~~~~~~-~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 147 (306)
T 2z66_A 70 CSQSDFG-TTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 147 (306)
T ss_dssp EEHHHHS-CSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTT
T ss_pred ccccccc-ccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcc
Confidence 3555555 888888888888877 466667888888888888888875544 4677888888888888888777777778
Q ss_pred CcccccEEEecCCcCCC-cCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCcccc
Q 011044 198 NLAELEMLWLQNNSLTG-TIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQ 276 (495)
Q Consensus 198 ~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 276 (495)
.+++|++|++++|.+++ ..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+. .+++|+
T Consensus 148 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~ 226 (306)
T 2z66_A 148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK-CLNSLQ 226 (306)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGT-TCTTCC
T ss_pred cCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhcc-CcccCC
Confidence 88888888888888775 4667777788888888888888777677777777788888887777643333333 566777
Q ss_pred ccccccceeeecccccccCCC-CCCeeecccccccc
Q 011044 277 TLSLYVNDFSGAIPKEIGNLT-KLTDLYLDQNKLQG 311 (495)
Q Consensus 277 ~L~L~~n~l~~~~~~~l~~l~-~L~~L~L~~n~i~~ 311 (495)
.|++++|.+.+..+..+..++ +|+.|++++|++++
T Consensus 227 ~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 227 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp EEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred EeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 777777777666666666663 67777777776664
No 47
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.5e-29 Score=247.86 Aligned_cols=277 Identities=22% Similarity=0.243 Sum_probs=138.5
Q ss_pred CCCCCCCCCccceeeeCCC-----------CCCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCC
Q 011044 35 NWNTSSSFCYWTGVTCDVR-----------SHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMS 103 (495)
Q Consensus 35 ~w~~~~~~c~w~gv~c~~~-----------~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 103 (495)
.|......|.|.++ |+.. ++++++|++++|.+++..+..+.++++|++|++++|.+++..+..+.+++
T Consensus 22 ~~~~~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (353)
T 2z80_A 22 SSNQASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG 100 (353)
T ss_dssp -----CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred CCCccCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCC
Confidence 55556677888776 5321 22455555555555544443455555555555555555544444455555
Q ss_pred CCcEEEccCCcccccCChhHhhcCCCCCEEEcccccCCccCC-cccCCCCCCCEEEcccC-cCccccCccccCCCCCCEE
Q 011044 104 SLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIP-STLSSCKQLRELSLSSN-YFSGTIPKEIGNLTKLTRL 181 (495)
Q Consensus 104 ~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L 181 (495)
+|++|++++|.+. .+|...+..+++|++|++++|.++...+ ..+.++++|++|++++| .+....+..+..+++|++|
T Consensus 101 ~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 179 (353)
T 2z80_A 101 SLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL 179 (353)
T ss_dssp TCCEEECCSSCCS-SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE
T ss_pred CCCEEECCCCcCC-cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEE
Confidence 5555555555543 3333323335555555555555442211 24445555555555554 2333333444445555555
Q ss_pred EccCCCCCCCCChhhhCcccccEEEecCCcCCCcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccc
Q 011044 182 NLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLS 261 (495)
Q Consensus 182 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~ 261 (495)
++++|.+.+..|..+..+++|++|++++|.++......+..+++|+.|++++|.+++..+..+..
T Consensus 180 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~--------------- 244 (353)
T 2z80_A 180 EIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST--------------- 244 (353)
T ss_dssp EEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-------------------
T ss_pred ECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccccc---------------
Confidence 55555544444444455555555555555443221122223444555555544444332221110
Q ss_pred cccchhhhhCCccccccccccceeee----cccccccCCCCCCeeecccccccccCCcc-ccCCCcCCEEeCcCCccccc
Q 011044 262 GELPANIGNNLPSLQTLSLYVNDFSG----AIPKEIGNLTKLTDLYLDQNKLQGKIPHE-IGNLRKLEWLMLSHNKLVGV 336 (495)
Q Consensus 262 ~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~i~~~~~~~-l~~l~~L~~L~l~~n~l~~~ 336 (495)
......++.+++.++.+++ .+|..+..+++|+.|++++|+++ .+|.. |..+++|++|++++|++.+.
T Consensus 245 -------~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 245 -------GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp ---------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred -------ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 0122334444444444433 35666778888888888888888 44444 57888888888888887653
No 48
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=3.9e-29 Score=244.87 Aligned_cols=289 Identities=22% Similarity=0.215 Sum_probs=179.7
Q ss_pred EEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEccccc
Q 011044 60 LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNM 139 (495)
Q Consensus 60 L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~ 139 (495)
.++++++++ .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+.+..|..+.. +++|++|++++|.
T Consensus 36 c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 36 CKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSS-LGSLEHLDLSYNY 111 (353)
T ss_dssp EECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT-CTTCCEEECCSSC
T ss_pred eeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCC-CCCCCEEECCCCc
Confidence 788888887 4555443 57888888888887666667777777777777777775444444433 6666666666666
Q ss_pred CCccCCcccCCCCCCCEEEcccCcCccccC-ccccCCCCCCEEEccCCC-CCCCCChhhhCcccccEEEecCCcCCCcCc
Q 011044 140 FHGKIPSTLSSCKQLRELSLSSNYFSGTIP-KEIGNLTKLTRLNLRQNK-LQGEIPEELGNLAELEMLWLQNNSLTGTIP 217 (495)
Q Consensus 140 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 217 (495)
+++..+..++++++|++|++++|.+++..+ ..+..+++|++|++++|. +....+..+.++++|++|++++|.+++..|
T Consensus 112 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 191 (353)
T 2z80_A 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP 191 (353)
T ss_dssp CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCH
Confidence 664333345666666666666666653222 245555666666666552 333334445555555555555555554444
Q ss_pred hhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeeccccc---cc
Q 011044 218 SSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKE---IG 294 (495)
Q Consensus 218 ~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---l~ 294 (495)
.. +..+++|++|++++|.+. .++..+...+++|+.|++++|.+++..+.. ..
T Consensus 192 ~~------------------------l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~ 246 (353)
T 2z80_A 192 KS------------------------LKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGE 246 (353)
T ss_dssp TT------------------------TTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------
T ss_pred HH------------------------HhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCcccccccccccccc
Confidence 44 444455555555555443 333333334555555555555554332222 22
Q ss_pred CCCCCCeeecccccccc----cCCccccCCCcCCEEeCcCCcccccCCcCccCCCCCcEEEccCCcCceecCCCCCCCCC
Q 011044 295 NLTKLTDLYLDQNKLQG----KIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLP 370 (495)
Q Consensus 295 ~l~~L~~L~L~~n~i~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 370 (495)
....++.++++++.+.+ .+|..+..+++|++|++++|++....+..+..+++|++|++++|++.+. +|
T Consensus 247 ~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~--------~~ 318 (353)
T 2z80_A 247 TNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS--------CP 318 (353)
T ss_dssp CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC--------HH
T ss_pred ccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCc--------CC
Confidence 34667888888887765 4667788999999999999999954443468999999999999998753 45
Q ss_pred ChhhhhhhhcCCCcc
Q 011044 371 NLEELFLWEYGREGR 385 (495)
Q Consensus 371 ~L~~L~l~~~~~~~~ 385 (495)
.++.+..|-....++
T Consensus 319 ~l~~l~~~~~~~~~~ 333 (353)
T 2z80_A 319 RIDYLSRWLNKNSQK 333 (353)
T ss_dssp HHHHHHHHHHHTTTT
T ss_pred CcHHHHHHHHhcccc
Confidence 566666665544443
No 49
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=1.1e-31 Score=272.70 Aligned_cols=330 Identities=20% Similarity=0.180 Sum_probs=242.2
Q ss_pred CCCeEEEEcCCCCCcccCchh-ccCCCCCCEEeCcCCcCCc----cCCccccCCCCCcEEEccCCcccccCChhHhhcCC
Q 011044 54 SHRVAALNISGLNLTGTIPSE-LANLSSLQALDLSFNWFYG----SIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMS 128 (495)
Q Consensus 54 ~~~l~~L~L~~~~l~~~~~~~-l~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~ 128 (495)
++++++|+|+++.+++..... +..+++|++|++++|.+++ .++..+..+++|++|++++|.+.+..+..+...++
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 357899999999887654443 7788999999999998874 34666788899999999999887666666666566
Q ss_pred ----CCCEEEcccccCCc----cCCcccCCCCCCCEEEcccCcCccccCcccc-----CCCCCCEEEccCCCCCCCC---
Q 011044 129 ----NLESLFLKYNMFHG----KIPSTLSSCKQLRELSLSSNYFSGTIPKEIG-----NLTKLTRLNLRQNKLQGEI--- 192 (495)
Q Consensus 129 ----~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-----~l~~L~~L~L~~n~l~~~~--- 192 (495)
+|++|++++|.++. .++..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++..
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 69999999998884 4577888899999999999988754444332 2567999999999887643
Q ss_pred -ChhhhCcccccEEEecCCcCCCcCchhhh-----cCCCCceeeCCCCcCCCC----CCcccccccccceeeccCccccc
Q 011044 193 -PEELGNLAELEMLWLQNNSLTGTIPSSIF-----SLSSLLNLDLSLNNFTGI----IPSSIGNLSSLQKLYLSDNQLSG 262 (495)
Q Consensus 193 -~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-----~l~~L~~L~Ls~n~l~~~----~~~~l~~~~~L~~L~l~~n~l~~ 262 (495)
+..+..+++|++|++++|.++...+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+.+
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence 45566778999999999888754444443 366899999999988764 35566778889999999988764
Q ss_pred ccc----hhhhhCCccccccccccceeeec----ccccccCCCCCCeeecccccccccCCcccc-----CCCcCCEEeCc
Q 011044 263 ELP----ANIGNNLPSLQTLSLYVNDFSGA----IPKEIGNLTKLTDLYLDQNKLQGKIPHEIG-----NLRKLEWLMLS 329 (495)
Q Consensus 263 ~~~----~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~-----~l~~L~~L~l~ 329 (495)
... ..+...+++|++|++++|.+++. ++..+..+++|++|++++|.+.+..+..+. ..++|++|+++
T Consensus 242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 321 (461)
T 1z7x_W 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK 321 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcC
Confidence 432 22222478899999999988753 566677788899999999888754333332 23688999999
Q ss_pred CCccccc----CCcCccCCCCCcEEEccCCcCceecCCCC----CCCCCChhhhhhhhcCCC
Q 011044 330 HNKLVGV----VPAPIFNLSTLISLQLHNNSLSGSLPSSA----DVPLPNLEELFLWEYGRE 383 (495)
Q Consensus 330 ~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----~~~l~~L~~L~l~~~~~~ 383 (495)
+|.+.+. ++..+..+++|+.|++++|.+.+..+... ....++|+.|++.+|..+
T Consensus 322 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~ 383 (461)
T 1z7x_W 322 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383 (461)
T ss_dssp TSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred CCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence 9888764 34455677889999999988875432211 122567888888877654
No 50
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=4e-28 Score=230.35 Aligned_cols=225 Identities=25% Similarity=0.272 Sum_probs=132.9
Q ss_pred EEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEccc
Q 011044 58 AALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKY 137 (495)
Q Consensus 58 ~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~ 137 (495)
+.++.++++++. +|..+ .++|++|++++|.+++..+..+.++++|++|++++|.+.+..|..+.. +++|++|++++
T Consensus 14 ~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTG-LALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT-CTTCCEEECCS
T ss_pred eEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCC-ccCCCEEeCCC
Confidence 455555555552 23222 356666666666666555555666666666666666665444444433 66666666666
Q ss_pred cc-CCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCcC
Q 011044 138 NM-FHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTI 216 (495)
Q Consensus 138 n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 216 (495)
|. +....+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence 65 55444555666666666666666666555555666666666666666666544445666666666666666666444
Q ss_pred chhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeee
Q 011044 217 PSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSG 287 (495)
Q Consensus 217 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 287 (495)
+..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++ ++...+..+++|+.|++++|.+..
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC-CCHHHHTTCTTCCEEECCSSCEEC
T ss_pred HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCc-CCHHHcccCcccCEEeccCCCccC
Confidence 4456666666666666666666656666666666666666666663 333322356666666666666653
No 51
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=4.2e-28 Score=234.62 Aligned_cols=269 Identities=25% Similarity=0.333 Sum_probs=181.6
Q ss_pred CCCCccccCCCCCC--CCCCccceeeeCCCCCCeEEEEcCCCCCccc----Cchhc--cCCCCCCEEeCcCCcCCccCCc
Q 011044 26 DDPTNFLAKNWNTS--SSFCYWTGVTCDVRSHRVAALNISGLNLTGT----IPSEL--ANLSSLQALDLSFNWFYGSIPS 97 (495)
Q Consensus 26 ~~~~~~l~~~w~~~--~~~c~w~gv~c~~~~~~l~~L~L~~~~l~~~----~~~~l--~~l~~L~~L~L~~n~l~~~~~~ 97 (495)
.++...+. .|... .++|.|.+..|..... .-.-+...|. .+..+ ...+++++|+|++|.++ .+|.
T Consensus 26 ~~~~~aLl-~~k~~~~~~~~~~~~~w~~~~~~-----~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~ 98 (328)
T 4fcg_A 26 RPYHDVLS-QWQRHYNADRNRWHSAWRQANSN-----NPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPD 98 (328)
T ss_dssp CCHHHHHH-HHHHHHHHCCTTHHHHHHHHTTT-----CTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCS
T ss_pred chHHHHHH-HHHHhccCCchhhhhhhcccccc-----cccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcCh
Confidence 34444565 77653 4688888776622100 0011222222 11112 24588999999999998 7888
Q ss_pred cccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccC---
Q 011044 98 SIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGN--- 174 (495)
Q Consensus 98 ~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~--- 174 (495)
.+.++++|++|++++|.+. .+|..+.. +++|++|++++|.++ .+|..+.++++|++|++++|.+.+.+|..+..
T Consensus 99 ~l~~l~~L~~L~L~~n~l~-~lp~~~~~-l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~ 175 (328)
T 4fcg_A 99 QAFRLSHLQHMTIDAAGLM-ELPDTMQQ-FAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDA 175 (328)
T ss_dssp CGGGGTTCSEEEEESSCCC-CCCSCGGG-GTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-
T ss_pred hhhhCCCCCEEECCCCCcc-chhHHHhc-cCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccc
Confidence 8888999999999999986 88877766 899999999999988 77888999999999999998888788876654
Q ss_pred ------CCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCcCchhhhcCCCCceeeCCCCcCCCCCCccccccc
Q 011044 175 ------LTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLS 248 (495)
Q Consensus 175 ------l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~ 248 (495)
+++|++|++++|.++ .+|..++++++|++|++++|.+++ +|..+..+++|++|++++|.+.+.+|..++.++
T Consensus 176 ~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~ 253 (328)
T 4fcg_A 176 SGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRA 253 (328)
T ss_dssp CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCC
T ss_pred hhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCC
Confidence 677777777777776 666667777777777777777763 455566677777777777666666666666666
Q ss_pred ccceeeccCcccccccchhhhhCCccccccccccceeeecccccccCCCCCCeeecccc
Q 011044 249 SLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQN 307 (495)
Q Consensus 249 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 307 (495)
+|+.|++++|.+.+.+|..+. .+++|++|++++|++.+.+|..+..+++|+.+++..+
T Consensus 254 ~L~~L~L~~n~~~~~~p~~~~-~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 254 PLKRLILKDCSNLLTLPLDIH-RLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CCCEEECTTCTTCCBCCTTGG-GCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred CCCEEECCCCCchhhcchhhh-cCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 666666666655555555443 4555555555555555555555555555555555443
No 52
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=7.5e-28 Score=228.47 Aligned_cols=239 Identities=19% Similarity=0.225 Sum_probs=202.2
Q ss_pred CCCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEE
Q 011044 54 SHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESL 133 (495)
Q Consensus 54 ~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L 133 (495)
++++++|++++|.+++..+..|..+++|++|++++|.+++..+..+.++++|++|++++|...+.++...+..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 56899999999999988878899999999999999999988889999999999999999983345544434449999999
Q ss_pred EcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCC
Q 011044 134 FLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLT 213 (495)
Q Consensus 134 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 213 (495)
++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.++
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 190 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence 99999999877888999999999999999999776777899999999999999998666667999999999999999999
Q ss_pred CcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeecccccc
Q 011044 214 GTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEI 293 (495)
Q Consensus 214 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 293 (495)
+..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+....+... -...++.+....+.+....|..+
T Consensus 191 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~--~~~~l~~~~~~~~~~~c~~p~~l 268 (285)
T 1ozn_A 191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARP--LWAWLQKFRGSSSEVPCSLPQRL 268 (285)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHH--HHHHHHHCCSEECCCBEEESGGG
T ss_pred ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHH--HHHHHHhcccccCccccCCchHh
Confidence 8889999999999999999999998877778999999999999999875443221 12345666666666666666554
Q ss_pred c
Q 011044 294 G 294 (495)
Q Consensus 294 ~ 294 (495)
.
T Consensus 269 ~ 269 (285)
T 1ozn_A 269 A 269 (285)
T ss_dssp T
T ss_pred C
Confidence 3
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=1e-27 Score=229.99 Aligned_cols=229 Identities=24% Similarity=0.241 Sum_probs=130.6
Q ss_pred CCCEEEcccccCCccCCcccCCCCCCCEEEcccCcCccc--cCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEE
Q 011044 129 NLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGT--IPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLW 206 (495)
Q Consensus 129 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 206 (495)
+|++|++++|.++...+..|.++++|++|++++|.++.. .+..+..+++|++|++++|.+. .+|..+..+++|++|+
T Consensus 29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLD 107 (306)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEE
T ss_pred CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEE
Confidence 344444444444322222234444444444444444311 1333334444555555554444 2333344455555555
Q ss_pred ecCCcCCCcCc-hhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCccccc-ccchhhhhCCccccccccccce
Q 011044 207 LQNNSLTGTIP-SSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSG-ELPANIGNNLPSLQTLSLYVND 284 (495)
Q Consensus 207 l~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~-~~~~~~~~~l~~L~~L~L~~n~ 284 (495)
+++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..|..+. .+++|++|++++|.
T Consensus 108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT-ELRNLTFLDLSQCQ 186 (306)
T ss_dssp CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCT-TCTTCCEEECTTSC
T ss_pred CCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHh-hCcCCCEEECCCCC
Confidence 55555443322 344555555555555555555555555556666666666666553 2333333 56667777777776
Q ss_pred eeecccccccCCCCCCeeecccccccccCCccccCCCcCCEEeCcCCcccccCCcCccCCC-CCcEEEccCCcCce
Q 011044 285 FSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLS-TLISLQLHNNSLSG 359 (495)
Q Consensus 285 l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~ 359 (495)
+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|++.+..+..+..++ +|+.|++++|++.+
T Consensus 187 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 6666666677777777777777777766555677777888888888887777777777774 78888888887763
No 54
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=1.3e-26 Score=233.89 Aligned_cols=280 Identities=27% Similarity=0.294 Sum_probs=138.7
Q ss_pred CCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEE
Q 011044 55 HRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLF 134 (495)
Q Consensus 55 ~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~ 134 (495)
+++++|++++|.+++ +|.. +++|++|++++|.+++ ++.. .++|++|++++|.+.+ +| .+. .+++|++|+
T Consensus 91 ~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~-~l~~L~~L~ 159 (454)
T 1jl5_A 91 PHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQ-NSSFLKIID 159 (454)
T ss_dssp TTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCT-TCTTCCEEE
T ss_pred CCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccC-CCCCCCEEE
Confidence 566677777666665 3432 3556666666665553 2211 1456666666666543 55 232 266666666
Q ss_pred cccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCC
Q 011044 135 LKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTG 214 (495)
Q Consensus 135 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 214 (495)
+++|.+++ +|..+ ++|++|++++|.+++ +| .++.+++|++|++++|.+++ +|.. .++|++|++++|.++
T Consensus 160 l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~- 228 (454)
T 1jl5_A 160 VDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE- 228 (454)
T ss_dssp CCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-
T ss_pred CCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-
Confidence 66666553 33322 356666666666654 34 35566666666666666553 2321 135666666666555
Q ss_pred cCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeeccccccc
Q 011044 215 TIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIG 294 (495)
Q Consensus 215 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 294 (495)
.+| .+..+++|++|++++|.+++. |. .+++|+.|++++|.+++ +|. ..++|+.|++++|.+++. +..
T Consensus 229 ~lp-~~~~l~~L~~L~l~~N~l~~l-~~---~~~~L~~L~l~~N~l~~-l~~----~~~~L~~L~ls~N~l~~l-~~~-- 295 (454)
T 1jl5_A 229 ELP-ELQNLPFLTTIYADNNLLKTL-PD---LPPSLEALNVRDNYLTD-LPE----LPQSLTFLDVSENIFSGL-SEL-- 295 (454)
T ss_dssp SCC-CCTTCTTCCEEECCSSCCSSC-CS---CCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSEE-SCC--
T ss_pred ccc-ccCCCCCCCEEECCCCcCCcc-cc---cccccCEEECCCCcccc-cCc----ccCcCCEEECcCCccCcc-cCc--
Confidence 344 255566666666666665542 22 12455666666665552 332 124555555555555431 100
Q ss_pred CCCCCCeeecccccccccCCccccCC-CcCCEEeCcCCcccccCCcCccCCCCCcEEEccCCcCceecCCCCCCCCCChh
Q 011044 295 NLTKLTDLYLDQNKLQGKIPHEIGNL-RKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLE 373 (495)
Q Consensus 295 ~l~~L~~L~L~~n~i~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 373 (495)
.++|+.|++++|++++ ++ .+ ++|++|++++|++.+ +|.. +++|+.|++++|.+. .+|. .+++|+
T Consensus 296 -~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~----~l~~L~ 360 (454)
T 1jl5_A 296 -PPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE----LPQNLK 360 (454)
T ss_dssp -CTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC----CCTTCC
T ss_pred -CCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc----hhhhcc
Confidence 1344444444444432 11 11 245555555555443 2221 344555555555544 3333 134445
Q ss_pred hhhhhhcCCCc
Q 011044 374 ELFLWEYGREG 384 (495)
Q Consensus 374 ~L~l~~~~~~~ 384 (495)
.|++.+|...+
T Consensus 361 ~L~L~~N~l~~ 371 (454)
T 1jl5_A 361 QLHVEYNPLRE 371 (454)
T ss_dssp EEECCSSCCSS
T ss_pred EEECCCCCCCc
Confidence 55554444443
No 55
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=7.4e-28 Score=243.00 Aligned_cols=251 Identities=25% Similarity=0.318 Sum_probs=112.9
Q ss_pred CCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCC-------------cEEEccCCcccccCCh
Q 011044 55 HRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSL-------------LSIYFNNNTLFGELPP 121 (495)
Q Consensus 55 ~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L-------------~~L~l~~n~~~~~~p~ 121 (495)
.++++|++++|.+ +.+|..++++++|++|++++|.+.+.+|..++++++| ++|++++|.+.+ +|.
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~ 88 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPE 88 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCS
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCC
Confidence 4566677777776 5666667777777777777776666666666665543 666666665532 332
Q ss_pred hHhhcCCCCCEEEcccccCCccCCccc----------------CCC-CCCCEEEcccCcCccccCccccCCCCCCEEEcc
Q 011044 122 NFCNQMSNLESLFLKYNMFHGKIPSTL----------------SSC-KQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLR 184 (495)
Q Consensus 122 ~~~~~l~~L~~L~l~~n~l~~~~~~~l----------------~~l-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 184 (495)
. .++|++|++++|.+++ +|..+ ..+ ++|++|++++|.+++ +| .++.+++|++|+++
T Consensus 89 ~----~~~L~~L~l~~n~l~~-lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~ 161 (454)
T 1jl5_A 89 L----PPHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVD 161 (454)
T ss_dssp C----CTTCSEEECCSSCCSS-CCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECC
T ss_pred C----cCCCCEEEccCCcCCc-cccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECC
Confidence 1 3455555555555553 33221 001 345555555555443 33 34555555555555
Q ss_pred CCCCCCCCChhhhCcccccEEEecCCcCCCcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCccccccc
Q 011044 185 QNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGEL 264 (495)
Q Consensus 185 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~ 264 (495)
+|.+++ +|.. ..+|++|++++|.+++ +| .+..+++|++|++++|.+++ +|.. .++|++|++++|.++ .+
T Consensus 162 ~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~l 230 (454)
T 1jl5_A 162 NNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-EL 230 (454)
T ss_dssp SSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SC
T ss_pred CCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-cc
Confidence 555442 2321 1345555555555543 23 34555555555555555543 2211 134555555555554 44
Q ss_pred chhhhhCCccccccccccceeeecccccccCCCCCCeeecccccccccCCccccCCCcCCEEeCcCCcccc
Q 011044 265 PANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVG 335 (495)
Q Consensus 265 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~ 335 (495)
|. +. .+++|++|++++|.+++ +|. .+++|+.|++++|++.+ +|.. +++|++|++++|++.+
T Consensus 231 p~-~~-~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~ 291 (454)
T 1jl5_A 231 PE-LQ-NLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSG 291 (454)
T ss_dssp CC-CT-TCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSE
T ss_pred cc-cC-CCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCc
Confidence 42 22 45555555555555543 222 12455555555555553 3321 2556666666666554
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=7.4e-27 Score=236.41 Aligned_cols=247 Identities=24% Similarity=0.248 Sum_probs=151.9
Q ss_pred eEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcc
Q 011044 57 VAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLK 136 (495)
Q Consensus 57 l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~ 136 (495)
.+.++.++.+++ .+|..+. ++|++|+|++|.+++..+..|.++++|++|++++|.+.+..+..+.. +++|++|+++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~L~ 131 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNG-LASLNTLELF 131 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT-CTTCCEEECC
T ss_pred CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccC-cccCCEEECC
Confidence 345666666665 3444332 57778888888777777777777777777777777775544444443 7777777777
Q ss_pred cccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCC-hhhhCcccccEEEecCCcCCCc
Q 011044 137 YNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIP-EELGNLAELEMLWLQNNSLTGT 215 (495)
Q Consensus 137 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~ 215 (495)
+|.++...+..|..+++|++|++++|.++...+..|..+++|++|++++|...+.++ ..|.++++|++|++++|.+++.
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence 777775555567777777777777777775555566677777777777644333333 3466666666666666666532
Q ss_pred CchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeecccccccC
Q 011044 216 IPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGN 295 (495)
Q Consensus 216 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 295 (495)
| .+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+. .+++|+.|++++|.+++..+..+..
T Consensus 212 -~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~ 288 (452)
T 3zyi_A 212 -P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFD-GLASLVELNLAHNNLSSLPHDLFTP 288 (452)
T ss_dssp -C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCSCCCTTSSTT
T ss_pred -c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhc-CCCCCCEEECCCCcCCccChHHhcc
Confidence 2 355566666666666666655555566666666666666655533333332 4555555555555555444444555
Q ss_pred CCCCCeeeccccccc
Q 011044 296 LTKLTDLYLDQNKLQ 310 (495)
Q Consensus 296 l~~L~~L~L~~n~i~ 310 (495)
+++|+.|++++|++.
T Consensus 289 l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 289 LRYLVELHLHHNPWN 303 (452)
T ss_dssp CTTCCEEECCSSCEE
T ss_pred ccCCCEEEccCCCcC
Confidence 555555555555544
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=6.4e-27 Score=236.03 Aligned_cols=247 Identities=23% Similarity=0.228 Sum_probs=143.7
Q ss_pred CCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCCEEEcc
Q 011044 81 LQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLS 160 (495)
Q Consensus 81 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 160 (495)
.+.++.++..++ .+|..+. +++++|++++|.+.+..+..+. .+++|++|++++|.++...+..|.++++|++|+++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFK-HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTS-SCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhh-CCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 456666666665 5555443 5667777777776544434443 36667777777776665555666666667777776
Q ss_pred cCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCc-CCCcCchhhhcCCCCceeeCCCCcCCCC
Q 011044 161 SNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNS-LTGTIPSSIFSLSSLLNLDLSLNNFTGI 239 (495)
Q Consensus 161 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 239 (495)
+|.++...+..|..+++|++|++++|.+....+..|.++++|++|++++|. +....+..+.++++|++|++++|.++..
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 200 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI 200 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc
Confidence 666665444556666666666666666665445556666666666666633 3322233455666666666666666532
Q ss_pred CCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeecccccccCCCCCCeeecccccccccCCccccC
Q 011044 240 IPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGN 319 (495)
Q Consensus 240 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~ 319 (495)
| .+..+++|+.|++++|.+++..+..+. .+++|+.|++++|.+++..+..+..+++|+.|+|++|++++..+..|..
T Consensus 201 -~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 277 (440)
T 3zyj_A 201 -P-NLTPLIKLDELDLSGNHLSAIRPGSFQ-GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTP 277 (440)
T ss_dssp -C-CCTTCSSCCEEECTTSCCCEECTTTTT-TCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSS
T ss_pred -c-ccCCCcccCEEECCCCccCccChhhhc-cCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcc
Confidence 2 245555666666666655533333333 5555555555555555555555555555555555555555444444555
Q ss_pred CCcCCEEeCcCCccc
Q 011044 320 LRKLEWLMLSHNKLV 334 (495)
Q Consensus 320 l~~L~~L~l~~n~l~ 334 (495)
+++|+.|++++|++.
T Consensus 278 l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 278 LHHLERIHLHHNPWN 292 (440)
T ss_dssp CTTCCEEECCSSCEE
T ss_pred ccCCCEEEcCCCCcc
Confidence 555555555555543
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=6.3e-27 Score=236.95 Aligned_cols=247 Identities=22% Similarity=0.220 Sum_probs=138.0
Q ss_pred CCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCCEEEcc
Q 011044 81 LQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLS 160 (495)
Q Consensus 81 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 160 (495)
.+.++.++..++ .+|..+. +++++|++++|.+.+..|..+.. +++|++|++++|.+++..+..|.++++|++|+++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~-l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRH-LHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTT-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCC-CCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 456666666665 4554433 46666666666665444444433 6666666666666665555666666666666666
Q ss_pred cCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCC-cCCCcCchhhhcCCCCceeeCCCCcCCCC
Q 011044 161 SNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNN-SLTGTIPSSIFSLSSLLNLDLSLNNFTGI 239 (495)
Q Consensus 161 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 239 (495)
+|.+++..+..|..+++|++|++++|.+....+..|.++++|++|++++| .+....+..+..+++|++|++++|.+++.
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence 66666544455666666666666666666444445666666666666653 33222223455566666666666665543
Q ss_pred CCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeecccccccCCCCCCeeecccccccccCCccccC
Q 011044 240 IPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGN 319 (495)
Q Consensus 240 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~ 319 (495)
| .+..+++|+.|++++|.+++..+..+. .+++|+.|++++|.+++..+..+..+++|+.|+|++|++++..+..|..
T Consensus 212 -~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 288 (452)
T 3zyi_A 212 -P-NLTPLVGLEELEMSGNHFPEIRPGSFH-GLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTP 288 (452)
T ss_dssp -C-CCTTCTTCCEEECTTSCCSEECGGGGT-TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTT
T ss_pred -c-cccccccccEEECcCCcCcccCccccc-CccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcc
Confidence 2 245555555555555555533333333 4555555555555555554555555555555555555555444444455
Q ss_pred CCcCCEEeCcCCccc
Q 011044 320 LRKLEWLMLSHNKLV 334 (495)
Q Consensus 320 l~~L~~L~l~~n~l~ 334 (495)
+++|+.|++++|++.
T Consensus 289 l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 289 LRYLVELHLHHNPWN 303 (452)
T ss_dssp CTTCCEEECCSSCEE
T ss_pred ccCCCEEEccCCCcC
Confidence 555555555555443
No 59
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=1.1e-29 Score=244.17 Aligned_cols=203 Identities=24% Similarity=0.263 Sum_probs=101.7
Q ss_pred CCCCCEEEcccccCCccCCccc--CCCCCCCEEEcccCcCccccCccccCC-----CCCCEEEccCCCCCCCCChhhhCc
Q 011044 127 MSNLESLFLKYNMFHGKIPSTL--SSCKQLRELSLSSNYFSGTIPKEIGNL-----TKLTRLNLRQNKLQGEIPEELGNL 199 (495)
Q Consensus 127 l~~L~~L~l~~n~l~~~~~~~l--~~l~~L~~L~l~~n~l~~~~~~~l~~l-----~~L~~L~L~~n~l~~~~~~~l~~l 199 (495)
+++|++|++++|.+++.+|..+ ..+++|++|++++|.+++. |..++.+ ++|++|++++|.+.+..+..++++
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 4444455555444444444433 4445555555555554433 4444333 455555555555544444445555
Q ss_pred ccccEEEecCCcCCCc--Cchhh--hcCCCCceeeCCCCcCCCC---CCcccccccccceeeccCcccccccchhhhhCC
Q 011044 200 AELEMLWLQNNSLTGT--IPSSI--FSLSSLLNLDLSLNNFTGI---IPSSIGNLSSLQKLYLSDNQLSGELPANIGNNL 272 (495)
Q Consensus 200 ~~L~~L~l~~n~l~~~--~~~~l--~~l~~L~~L~Ls~n~l~~~---~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l 272 (495)
++|++|++++|.+.+. .+..+ ..+++|++|++++|.+++. ....+..+++|+.|++++|.+++..|...+..+
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence 5555555555544332 12222 4455555555555555421 111223445555555555555543332222234
Q ss_pred ccccccccccceeeecccccccCCCCCCeeecccccccccCCccccCCCcCCEEeCcCCcccc
Q 011044 273 PSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVG 335 (495)
Q Consensus 273 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~ 335 (495)
++|++|++++|.++ .+|..+. ++|+.|++++|++++. |. +..+++|++|++++|++++
T Consensus 253 ~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 253 SQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp TTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 55666666666655 4444443 5666667776666643 44 6666777777777776653
No 60
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=4.5e-27 Score=244.51 Aligned_cols=284 Identities=27% Similarity=0.367 Sum_probs=233.2
Q ss_pred cccCCCCCCCCCCcccee--------eeCCCCCCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCC
Q 011044 31 FLAKNWNTSSSFCYWTGV--------TCDVRSHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNM 102 (495)
Q Consensus 31 ~l~~~w~~~~~~c~w~gv--------~c~~~~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l 102 (495)
... .|....++|.|.+. .|. ...++.|++++++++ .+|..+. ++|++|++++|.++ .+|. .+
T Consensus 11 ~w~-~W~~~~~~~~~~~r~~~~~~~~~c~--~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l 80 (622)
T 3g06_A 11 VWS-AWRRAAPAEESRGRAAVVQKMRACL--NNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LP 80 (622)
T ss_dssp HHH-HHHHTCCGGGHHHHHHHHHHHHHHH--HHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CC
T ss_pred HHH-HHHhcCCcchhccccccCccccccc--CCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cC
Confidence 344 78777788998653 233 246999999999998 6676665 89999999999998 5665 57
Q ss_pred CCCcEEEccCCcccccCChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEE
Q 011044 103 SSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLN 182 (495)
Q Consensus 103 ~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 182 (495)
++|++|++++|.+. .+|. .+++|++|++++|.+++ +|. .+++|++|++++|.+++ +|.. +++|++|+
T Consensus 81 ~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~ 147 (622)
T 3g06_A 81 PELRTLEVSGNQLT-SLPV----LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELS 147 (622)
T ss_dssp TTCCEEEECSCCCS-CCCC----CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEE
T ss_pred CCCCEEEcCCCcCC-cCCC----CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEE
Confidence 89999999999985 5666 48999999999999985 454 56899999999999985 5553 48999999
Q ss_pred ccCCCCCCCCChhhhCcccccEEEecCCcCCCcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCccccc
Q 011044 183 LRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSG 262 (495)
Q Consensus 183 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~ 262 (495)
+++|.+++ +|. .+++|+.|++++|.+++ +| ..+++|+.|++++|.+++. |. .+++|+.|++++|.++
T Consensus 148 Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~- 214 (622)
T 3g06_A 148 VSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLASL-PT---LPSELYKLWAYNNRLT- 214 (622)
T ss_dssp CCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS-
T ss_pred CcCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCCC-CC---ccchhhEEECcCCccc-
Confidence 99999985 443 45789999999999985 55 4578999999999999864 33 2478999999999998
Q ss_pred ccchhhhhCCccccccccccceeeecccccccCCCCCCeeecccccccccCCccccCCCcCCEEeCcCCcccccCCcCcc
Q 011044 263 ELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIF 342 (495)
Q Consensus 263 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 342 (495)
.+|. .+++|+.|++++|.+++ +| ..+++|+.|++++|.++ .+|. .+++|+.|++++|+++ .+|..+.
T Consensus 215 ~l~~----~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~ 281 (622)
T 3g06_A 215 SLPA----LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLI 281 (622)
T ss_dssp SCCC----CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGG
T ss_pred ccCC----CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHh
Confidence 5553 35789999999999985 44 45689999999999998 4555 6789999999999999 6788899
Q ss_pred CCCCCcEEEccCCcCceecCC
Q 011044 343 NLSTLISLQLHNNSLSGSLPS 363 (495)
Q Consensus 343 ~l~~L~~L~l~~n~l~~~~~~ 363 (495)
.+++|+.|++++|++.+..|.
T Consensus 282 ~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 282 HLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp GSCTTCEEECCSCCCCHHHHH
T ss_pred hccccCEEEecCCCCCCcCHH
Confidence 999999999999999865543
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=1.1e-26 Score=234.32 Aligned_cols=248 Identities=24% Similarity=0.245 Sum_probs=180.3
Q ss_pred eEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcc
Q 011044 57 VAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLK 136 (495)
Q Consensus 57 l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~ 136 (495)
.+.++..+.+++ .+|..+. +++++|+|++|.+++..+..|.++++|++|++++|.+.+..+..+ ..+++|++|+++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~-~~l~~L~~L~L~ 120 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAF-NGLANLNTLELF 120 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGG-TTCSSCCEEECC
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhc-cCCccCCEEECC
Confidence 345566666665 4454443 677888888888877777778888888888888887754433444 347888888888
Q ss_pred cccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCC-hhhhCcccccEEEecCCcCCCc
Q 011044 137 YNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIP-EELGNLAELEMLWLQNNSLTGT 215 (495)
Q Consensus 137 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~ 215 (495)
+|.++...+..|..+++|++|++++|.+....+..|..+++|++|++++|...+.++ ..|.++++|++|++++|.++ .
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~ 199 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-E 199 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-S
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-c
Confidence 888876555567788888888888888876666677788888888888754333433 45777888888888888877 3
Q ss_pred CchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeecccccccC
Q 011044 216 IPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGN 295 (495)
Q Consensus 216 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 295 (495)
+| .+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+. .+++|+.|+|++|.+++..+..+..
T Consensus 200 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~ 277 (440)
T 3zyj_A 200 IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFD-NLQSLVEINLAHNNLTLLPHDLFTP 277 (440)
T ss_dssp CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSST-TCTTCCEEECTTSCCCCCCTTTTSS
T ss_pred cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhc-CCCCCCEEECCCCCCCccChhHhcc
Confidence 44 467778888888888888877777788888888888888888754444443 6788888888888887666667777
Q ss_pred CCCCCeeecccccccc
Q 011044 296 LTKLTDLYLDQNKLQG 311 (495)
Q Consensus 296 l~~L~~L~L~~n~i~~ 311 (495)
+++|+.|+|++|++..
T Consensus 278 l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 278 LHHLERIHLHHNPWNC 293 (440)
T ss_dssp CTTCCEEECCSSCEEC
T ss_pred ccCCCEEEcCCCCccC
Confidence 8888888888887654
No 62
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.95 E-value=6.9e-30 Score=259.55 Aligned_cols=326 Identities=20% Similarity=0.205 Sum_probs=186.9
Q ss_pred CCeEEEEcCCCCCcc----cCchhccCCCCCCEEeCcCCcCCccCCcccc-CCC----CCcEEEccCCcccc----cCCh
Q 011044 55 HRVAALNISGLNLTG----TIPSELANLSSLQALDLSFNWFYGSIPSSIF-NMS----SLLSIYFNNNTLFG----ELPP 121 (495)
Q Consensus 55 ~~l~~L~L~~~~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~-~l~----~L~~L~l~~n~~~~----~~p~ 121 (495)
+++++|+|++|.+++ .++..+..+++|++|++++|.+.+..+..+. .++ +|++|++++|.+.+ .++.
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~ 107 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS 107 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHH
Confidence 467777777777664 2345566667777777777766543332222 233 57777777776653 2344
Q ss_pred hHhhcCCCCCEEEcccccCCccCCccc-----CCCCCCCEEEcccCcCccc----cCccccCCCCCCEEEccCCCCCCCC
Q 011044 122 NFCNQMSNLESLFLKYNMFHGKIPSTL-----SSCKQLRELSLSSNYFSGT----IPKEIGNLTKLTRLNLRQNKLQGEI 192 (495)
Q Consensus 122 ~~~~~l~~L~~L~l~~n~l~~~~~~~l-----~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~ 192 (495)
.+.. +++|++|++++|.+++..+..+ ...++|++|++++|.+++. ++..+..+++|++|++++|.+.+..
T Consensus 108 ~l~~-~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 186 (461)
T 1z7x_W 108 TLRT-LPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAG 186 (461)
T ss_dssp HTTS-CTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred HHcc-CCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHH
Confidence 4333 6677777777776654322222 2245677777777766643 2444555677777777777665433
Q ss_pred Chhhh-----CcccccEEEecCCcCCCc----CchhhhcCCCCceeeCCCCcCCCCC-----CcccccccccceeeccCc
Q 011044 193 PEELG-----NLAELEMLWLQNNSLTGT----IPSSIFSLSSLLNLDLSLNNFTGII-----PSSIGNLSSLQKLYLSDN 258 (495)
Q Consensus 193 ~~~l~-----~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~-----~~~l~~~~~L~~L~l~~n 258 (495)
+..+. ..++|++|++++|.++.. ++..+..+++|++|++++|.+++.. +..+..+++|++|++++|
T Consensus 187 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n 266 (461)
T 1z7x_W 187 VRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC 266 (461)
T ss_dssp HHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC
Confidence 33332 244677777777766642 3555666677777777777665432 111224566777777777
Q ss_pred ccccc----cchhhhhCCccccccccccceeeecccccccC-----CCCCCeeeccccccccc----CCccccCCCcCCE
Q 011044 259 QLSGE----LPANIGNNLPSLQTLSLYVNDFSGAIPKEIGN-----LTKLTDLYLDQNKLQGK----IPHEIGNLRKLEW 325 (495)
Q Consensus 259 ~l~~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-----l~~L~~L~L~~n~i~~~----~~~~l~~l~~L~~ 325 (495)
.+++. ++..+. .+++|++|++++|.+.+..+..+.. .++|+.|++++|.+++. ++..+..+++|++
T Consensus 267 ~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 345 (461)
T 1z7x_W 267 GITAKGCGDLCRVLR-AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLE 345 (461)
T ss_dssp CCCHHHHHHHHHHHH-HCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCE
T ss_pred CCCHHHHHHHHHHHh-hCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccE
Confidence 66633 333333 4667777777777665433322221 25677777777766643 3444556677777
Q ss_pred EeCcCCcccccCCcCccC-----CCCCcEEEccCCcCce----ecCCCCCCCCCChhhhhhhhcCCC
Q 011044 326 LMLSHNKLVGVVPAPIFN-----LSTLISLQLHNNSLSG----SLPSSADVPLPNLEELFLWEYGRE 383 (495)
Q Consensus 326 L~l~~n~l~~~~~~~~~~-----l~~L~~L~l~~n~l~~----~~~~~~~~~l~~L~~L~l~~~~~~ 383 (495)
|++++|.+.+..+..+.. .++|+.|++++|.+++ .+|.... .+++|++|++.+|..+
T Consensus 346 L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~-~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 346 LQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLL-ANHSLRELDLSNNCLG 411 (461)
T ss_dssp EECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH-HCCCCCEEECCSSSCC
T ss_pred EEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHH-hCCCccEEECCCCCCC
Confidence 777777666543333321 4567777777776664 3333222 3566777776666544
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=1.4e-28 Score=236.58 Aligned_cols=250 Identities=25% Similarity=0.234 Sum_probs=207.5
Q ss_pred ccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcccccCC-ccCCcccC-------CCCCCCEEEcccCcCccccCc
Q 011044 99 IFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFH-GKIPSTLS-------SCKQLRELSLSSNYFSGTIPK 170 (495)
Q Consensus 99 l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~-------~l~~L~~L~l~~n~l~~~~~~ 170 (495)
+...++|++|++++|.+ .+|..+... |+.|++++|.+. ..++..+. ++++|++|++++|.+++.+|.
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 34556777888888887 777777653 888888888874 34565554 789999999999999988888
Q ss_pred cc--cCCCCCCEEEccCCCCCCCCChhhhCc-----ccccEEEecCCcCCCcCchhhhcCCCCceeeCCCCcCCCC--CC
Q 011044 171 EI--GNLTKLTRLNLRQNKLQGEIPEELGNL-----AELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGI--IP 241 (495)
Q Consensus 171 ~l--~~l~~L~~L~L~~n~l~~~~~~~l~~l-----~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~--~~ 241 (495)
.+ ..+++|++|++++|.+++. |..++.+ ++|++|++++|.+++..+..+..+++|++|++++|.+.+. .+
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 192 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHH
T ss_pred HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHH
Confidence 76 8999999999999999977 8888877 8999999999999988888999999999999999998764 23
Q ss_pred ccc--ccccccceeeccCccccc--ccchhhhhCCccccccccccceeeeccc-ccccCCCCCCeeecccccccccCCcc
Q 011044 242 SSI--GNLSSLQKLYLSDNQLSG--ELPANIGNNLPSLQTLSLYVNDFSGAIP-KEIGNLTKLTDLYLDQNKLQGKIPHE 316 (495)
Q Consensus 242 ~~l--~~~~~L~~L~l~~n~l~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~i~~~~~~~ 316 (495)
..+ +.+++|++|++++|.+++ .++..++..+++|++|++++|.+++..+ ..+..+++|+.|++++|.++ .+|..
T Consensus 193 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~ 271 (312)
T 1wwl_A 193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKG 271 (312)
T ss_dssp HHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSS
T ss_pred HHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhh
Confidence 333 788999999999999873 3344555578999999999999987664 45667899999999999998 67776
Q ss_pred ccCCCcCCEEeCcCCcccccCCcCccCCCCCcEEEccCCcCce
Q 011044 317 IGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSG 359 (495)
Q Consensus 317 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 359 (495)
+. ++|++|++++|++++. |. +..+++|+.|++++|++++
T Consensus 272 ~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 272 LP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred cc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 65 8999999999999876 55 8899999999999999874
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=4.4e-28 Score=233.60 Aligned_cols=261 Identities=18% Similarity=0.166 Sum_probs=173.7
Q ss_pred CCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEE
Q 011044 55 HRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLF 134 (495)
Q Consensus 55 ~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~ 134 (495)
.+++.++++++.+.......+..+++|++|++++|.+++..|..+.++++|++|++++|.+.+..+ + ..+++|++|+
T Consensus 10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~-~~l~~L~~L~ 86 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--L-ESLSTLRTLD 86 (317)
T ss_dssp TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--E-TTCTTCCEEE
T ss_pred CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--h-hhcCCCCEEE
Confidence 456666777777766665666777888888888888887766778888888888888888865544 3 3478888888
Q ss_pred cccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCC
Q 011044 135 LKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTG 214 (495)
Q Consensus 135 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 214 (495)
+++|.+++. + ..++|++|++++|.+++..+. .+++|++|++++|.+++..+..+..+++|++|++++|.+++
T Consensus 87 Ls~n~l~~l-~----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 158 (317)
T 3o53_A 87 LNNNYVQEL-L----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158 (317)
T ss_dssp CCSSEEEEE-E----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCE
T ss_pred CcCCccccc-c----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCc
Confidence 888877632 2 337788888888887755433 35677888888887776666667777778888888777776
Q ss_pred cCchhhh-cCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeecccccc
Q 011044 215 TIPSSIF-SLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEI 293 (495)
Q Consensus 215 ~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 293 (495)
..+..+. .+++|++|++++|.+++.. ....+++|++|++++|.++ .++..+. .+++|+.|++++|.++ .+|..+
T Consensus 159 ~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~N~l~-~l~~~~~-~l~~L~~L~L~~N~l~-~l~~~~ 233 (317)
T 3o53_A 159 VNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLA-FMGPEFQ-SAAGVTWISLRNNKLV-LIEKAL 233 (317)
T ss_dssp EEGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCC-EECGGGG-GGTTCSEEECTTSCCC-EECTTC
T ss_pred ccHHHHhhccCcCCEEECCCCcCcccc--cccccccCCEEECCCCcCC-cchhhhc-ccCcccEEECcCCccc-chhhHh
Confidence 5555553 5677777777777776542 1234566677777766666 3333333 5566666666666665 344455
Q ss_pred cCCCCCCeeeccccccc-ccCCccccCCCcCCEEeCcCC
Q 011044 294 GNLTKLTDLYLDQNKLQ-GKIPHEIGNLRKLEWLMLSHN 331 (495)
Q Consensus 294 ~~l~~L~~L~L~~n~i~-~~~~~~l~~l~~L~~L~l~~n 331 (495)
..+++|+.|++++|++. +..+..+..+++|+.++++++
T Consensus 234 ~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp CCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 55566666666666655 344455555555555555533
No 65
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=6.6e-26 Score=213.19 Aligned_cols=217 Identities=27% Similarity=0.376 Sum_probs=187.5
Q ss_pred CCCccceeeeCCCCCCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCC
Q 011044 41 SFCYWTGVTCDVRSHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELP 120 (495)
Q Consensus 41 ~~c~w~gv~c~~~~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p 120 (495)
+.|.|.|+.|.- ...++.+++++++++. +|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+. .+|
T Consensus 3 ~~C~~~~~~C~c-~~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~ 77 (270)
T 2o6q_A 3 ALCKKDGGVCSC-NNNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLP 77 (270)
T ss_dssp CCBGGGTCSBEE-ETTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCC
T ss_pred ccCCCCCCCCEe-CCCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeC
Confidence 679999988854 3467899999999984 565443 68999999999999777778999999999999999985 677
Q ss_pred hhHhhcCCCCCEEEcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcc
Q 011044 121 PNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLA 200 (495)
Q Consensus 121 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 200 (495)
..++..+++|++|++++|.++...+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..+..++
T Consensus 78 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 157 (270)
T 2o6q_A 78 AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT 157 (270)
T ss_dssp TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCc
Confidence 77666699999999999999976677789999999999999999987777889999999999999999876666788999
Q ss_pred cccEEEecCCcCCCcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCccccc
Q 011044 201 ELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSG 262 (495)
Q Consensus 201 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~ 262 (495)
+|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+..
T Consensus 158 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 99999999999987766778889999999999999988777778888999999999998753
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=2.3e-27 Score=228.55 Aligned_cols=244 Identities=23% Similarity=0.197 Sum_probs=164.5
Q ss_pred hHhhcCCCCCEEEcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCccc
Q 011044 122 NFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAE 201 (495)
Q Consensus 122 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 201 (495)
.+...+++|++|++++|.+++..|..+.++++|++|++++|.+++..+ +..+++|++|++++|.+++. ...++
T Consensus 28 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l-----~~~~~ 100 (317)
T 3o53_A 28 SLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-----LVGPS 100 (317)
T ss_dssp HHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEE-----EECTT
T ss_pred HHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccc-----cCCCC
Confidence 333335566666666666665555566666666666666666654333 56666666666666665521 12366
Q ss_pred ccEEEecCCcCCCcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccc
Q 011044 202 LEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLY 281 (495)
Q Consensus 202 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~ 281 (495)
|++|++++|.+++..+. .+++|++|++++|.+++..+..++.+++|+.|++++|.+++..+..+...+++|++|+++
T Consensus 101 L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~ 177 (317)
T 3o53_A 101 IETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177 (317)
T ss_dssp CCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECT
T ss_pred cCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECC
Confidence 67777777766644332 256677777777777776666677777788888888877755555554467788888888
Q ss_pred cceeeecccccccCCCCCCeeecccccccccCCccccCCCcCCEEeCcCCcccccCCcCccCCCCCcEEEccCCcCc-ee
Q 011044 282 VNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLS-GS 360 (495)
Q Consensus 282 ~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~ 360 (495)
+|.+++. + ....+++|+.|++++|++++ ++..+..+++|++|++++|++.. +|..+..+++|+.|++++|++. +.
T Consensus 178 ~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~ 253 (317)
T 3o53_A 178 YNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGT 253 (317)
T ss_dssp TSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHH
T ss_pred CCcCccc-c-cccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcC
Confidence 8887654 2 23347888888888888884 44558888888888888888884 5667888888999999998887 44
Q ss_pred cCCCCCCCCCChhhhhhhhc
Q 011044 361 LPSSADVPLPNLEELFLWEY 380 (495)
Q Consensus 361 ~~~~~~~~l~~L~~L~l~~~ 380 (495)
+|... ..+++|+.+++..+
T Consensus 254 ~~~~~-~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 254 LRDFF-SKNQRVQTVAKQTV 272 (317)
T ss_dssp HHHHH-HTCHHHHHHHHHHH
T ss_pred HHHHH-hccccceEEECCCc
Confidence 44332 35777888877643
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=1.7e-26 Score=235.36 Aligned_cols=235 Identities=19% Similarity=0.166 Sum_probs=144.7
Q ss_pred CCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCCEEE
Q 011044 79 SSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELS 158 (495)
Q Consensus 79 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 158 (495)
++|++|+|++|.+++..|..|.++++|++|++++|.+.+..| + ..+++|++|++++|.+++. + ..++|++|+
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l-~~l~~L~~L~Ls~N~l~~l-~----~~~~L~~L~ 105 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--L-ESLSTLRTLDLNNNYVQEL-L----VGPSIETLH 105 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--C-TTCTTCCEEECCSSEEEEE-E----ECTTCCEEE
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--c-ccCCCCCEEEecCCcCCCC-C----CCCCcCEEE
Confidence 366666666666665555566666666666666666654443 2 2366666666666666532 1 125666777
Q ss_pred cccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCcCchhhh-cCCCCceeeCCCCcCC
Q 011044 159 LSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIF-SLSSLLNLDLSLNNFT 237 (495)
Q Consensus 159 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~Ls~n~l~ 237 (495)
+++|.+++..+. .+++|++|++++|.+++..|..++.+++|+.|++++|.+++..|..+. .+++|+.|++++|.++
T Consensus 106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 777666654333 345667777777777666666666677777777777777665565554 5677777777777766
Q ss_pred CCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeecccccccCCCCCCeeeccccccc-ccCCcc
Q 011044 238 GIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQ-GKIPHE 316 (495)
Q Consensus 238 ~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~-~~~~~~ 316 (495)
+..+ ...+++|+.|++++|.+++ +|..+. .+++|+.|++++|.+++ +|..+..+++|+.|++++|.+. +.+|..
T Consensus 183 ~~~~--~~~l~~L~~L~Ls~N~l~~-~~~~~~-~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~ 257 (487)
T 3oja_A 183 DVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQ-SAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDF 257 (487)
T ss_dssp EEEC--CCCCTTCCEEECCSSCCCE-ECGGGG-GGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHH
T ss_pred cccc--cccCCCCCEEECCCCCCCC-CCHhHc-CCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHH
Confidence 5422 2346667777777777663 333333 56667777777766663 4555666667777777777666 344555
Q ss_pred ccCCCcCCEEeCc
Q 011044 317 IGNLRKLEWLMLS 329 (495)
Q Consensus 317 l~~l~~L~~L~l~ 329 (495)
+..++.|+.++++
T Consensus 258 ~~~l~~L~~l~~~ 270 (487)
T 3oja_A 258 FSKNQRVQTVAKQ 270 (487)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HHhCCCCcEEecc
Confidence 6666666666554
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=5.6e-26 Score=231.48 Aligned_cols=236 Identities=24% Similarity=0.212 Sum_probs=175.2
Q ss_pred CCCCEEEcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEe
Q 011044 128 SNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWL 207 (495)
Q Consensus 128 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 207 (495)
++|++|++++|.+++..|..|..+++|++|++++|.+++..| +..+++|++|++++|.+++.. ..++|+.|++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L 106 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHA 106 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEEC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEEC
Confidence 367777777777776666677777777777777777775544 777777888888777766322 2367888888
Q ss_pred cCCcCCCcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeee
Q 011044 208 QNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSG 287 (495)
Q Consensus 208 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 287 (495)
++|.+++..+. .+++|+.|++++|.+++..|..++.+++|+.|++++|.+++..|..+...+++|+.|++++|.+++
T Consensus 107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 88877755443 357788888888888877777778888888888888888876676665567888888888888875
Q ss_pred cccccccCCCCCCeeecccccccccCCccccCCCcCCEEeCcCCcccccCCcCccCCCCCcEEEccCCcCc-eecCCCCC
Q 011044 288 AIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLS-GSLPSSAD 366 (495)
Q Consensus 288 ~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~ 366 (495)
.. ....+++|+.|++++|.+++ +|..+..+++|+.|++++|.+.+ +|..+..+++|+.|++++|++. +.+|...
T Consensus 184 ~~--~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~- 258 (487)
T 3oja_A 184 VK--GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFF- 258 (487)
T ss_dssp EE--CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHH-
T ss_pred cc--ccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHH-
Confidence 52 23457888999999998885 44458888899999999998885 5667888889999999999887 4443332
Q ss_pred CCCCChhhhhhh
Q 011044 367 VPLPNLEELFLW 378 (495)
Q Consensus 367 ~~l~~L~~L~l~ 378 (495)
..++.|+.+.+.
T Consensus 259 ~~l~~L~~l~~~ 270 (487)
T 3oja_A 259 SKNQRVQTVAKQ 270 (487)
T ss_dssp TTCHHHHHHHHH
T ss_pred HhCCCCcEEecc
Confidence 346777777765
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=3.8e-24 Score=201.86 Aligned_cols=205 Identities=24% Similarity=0.258 Sum_probs=115.4
Q ss_pred CCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEE
Q 011044 55 HRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLF 134 (495)
Q Consensus 55 ~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~ 134 (495)
+.+++|++++|.+++..+..|.++++|++|++++|.+++..+..+.++++|++|++++|.+.+..+..+.. +++|++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG-LSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT-CTTCCEEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcC-CccccEEE
Confidence 34666666666666555555666666666666666666555555666666666666666664433333333 66666666
Q ss_pred cccccCCccCCcccCCCCCCCEEEcccCcCccc-cCccccCCCCCCEEEccCCCCCCCCChhhhCccccc----EEEecC
Q 011044 135 LKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGT-IPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELE----MLWLQN 209 (495)
Q Consensus 135 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~----~L~l~~ 209 (495)
+++|.+.+..+..+.++++|++|++++|.+++. +|..+..+++|++|++++|.+++..+..+..+++|+ .|++++
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~ 186 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCC
Confidence 666666544444556666666666666665542 355566666666666666666544444454444444 555666
Q ss_pred CcCCCcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccc
Q 011044 210 NSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLS 261 (495)
Q Consensus 210 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~ 261 (495)
|.+++..+ ......+|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 187 n~l~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 187 NPMNFIQP-GAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp SCCCEECT-TSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred CcccccCc-cccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 65553322 2223335556666666555544444555555555555555554
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=4.8e-24 Score=201.17 Aligned_cols=162 Identities=25% Similarity=0.302 Sum_probs=95.4
Q ss_pred EcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcccccC
Q 011044 61 NISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMF 140 (495)
Q Consensus 61 ~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l 140 (495)
+..+.+++ .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+.+..+..+ ..+++|++|++++|.+
T Consensus 13 ~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 13 QCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY-QSLSHLSTLILTGNPI 88 (276)
T ss_dssp ECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTT-TTCTTCCEEECTTCCC
T ss_pred EecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHc-cCCcCCCEEECCCCcc
Confidence 33444444 3444332 568888888888876666677777777777777777753333333 3366666666666666
Q ss_pred CccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCC-CChhhhCcccccEEEecCCcCCCcCchh
Q 011044 141 HGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGE-IPEELGNLAELEMLWLQNNSLTGTIPSS 219 (495)
Q Consensus 141 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 219 (495)
++..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+. +|..+.++++|++|++++|.+++..+..
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 168 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHH
Confidence 655555666666666666666666654444555666666666666655542 3555555555555555555555443334
Q ss_pred hhcCCCC
Q 011044 220 IFSLSSL 226 (495)
Q Consensus 220 l~~l~~L 226 (495)
+..+++|
T Consensus 169 ~~~l~~L 175 (276)
T 2z62_A 169 LRVLHQM 175 (276)
T ss_dssp GHHHHTC
T ss_pred hhhhhhc
Confidence 4333333
No 71
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.91 E-value=3.1e-23 Score=215.68 Aligned_cols=261 Identities=28% Similarity=0.345 Sum_probs=216.0
Q ss_pred CCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCCEEE
Q 011044 79 SSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELS 158 (495)
Q Consensus 79 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 158 (495)
.++++|++++|.++ .+|..+. ++|++|++++|.+. .+|. .+++|++|++++|.++ .+|. .+++|++|+
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLT-SLPV---LPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCS-CCCC---CCTTCCEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEE
Confidence 46999999999998 7787665 89999999999985 6666 3899999999999998 4665 679999999
Q ss_pred cccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCcCchhhhcCCCCceeeCCCCcCCC
Q 011044 159 LSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTG 238 (495)
Q Consensus 159 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 238 (495)
+++|.+++ +|. .+++|++|++++|.+++ +|.. +++|++|++++|.+++ +|. .+++|+.|++++|.+++
T Consensus 108 Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~ 175 (622)
T 3g06_A 108 IFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS 175 (622)
T ss_dssp ECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC
T ss_pred CcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC
Confidence 99999985 444 56899999999999985 5543 5899999999999984 443 35789999999999986
Q ss_pred CCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeecccccccCCCCCCeeecccccccccCCcccc
Q 011044 239 IIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIG 318 (495)
Q Consensus 239 ~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~ 318 (495)
. | ..+++|+.|++++|.++ .+|. ..++|+.|++++|.++ .++. .+++|+.|++++|.+++ +| .
T Consensus 176 l-~---~~~~~L~~L~Ls~N~l~-~l~~----~~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~-lp---~ 238 (622)
T 3g06_A 176 L-P---MLPSGLQELSVSDNQLA-SLPT----LPSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTS-LP---V 238 (622)
T ss_dssp C-C---CCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSC-CC---C
T ss_pred C-c---ccCCCCcEEECCCCCCC-CCCC----ccchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCc-CC---C
Confidence 4 4 45689999999999998 4554 3578999999999997 4443 34889999999999985 55 4
Q ss_pred CCCcCCEEeCcCCcccccCCcCccCCCCCcEEEccCCcCceecCCCCCCCCCChhhhhhhhcCCCccc
Q 011044 319 NLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFLWEYGREGRV 386 (495)
Q Consensus 319 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 386 (495)
.+++|+.|++++|.++. +|. .+++|+.|++++|++. .+|... ..+++|+.|++.+|...+..
T Consensus 239 ~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l-~~l~~L~~L~L~~N~l~~~~ 300 (622)
T 3g06_A 239 LPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESL-IHLSSETTVNLEGNPLSERT 300 (622)
T ss_dssp CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGG-GGSCTTCEEECCSCCCCHHH
T ss_pred CCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHH-hhccccCEEEecCCCCCCcC
Confidence 67899999999999984 554 6789999999999998 777654 46899999999998876543
No 72
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=4.8e-24 Score=200.63 Aligned_cols=224 Identities=23% Similarity=0.295 Sum_probs=141.9
Q ss_pred EEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcccc
Q 011044 59 ALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYN 138 (495)
Q Consensus 59 ~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n 138 (495)
.+++.++.+.+. ..+..+++|++|++++|.++. + ..+..+++|++|++++|.+.+ + ..+. .+++|++|++++|
T Consensus 23 ~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~-~l~~L~~L~L~~n 95 (272)
T 3rfs_A 23 KANLKKKSVTDA--VTQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-I-SALK-ELTNLTYLILTGN 95 (272)
T ss_dssp HHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-C-GGGT-TCTTCCEEECTTS
T ss_pred HHHhcCcccccc--cccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-c-hhhc-CCCCCCEEECCCC
Confidence 334444444433 224456666677776666652 2 235666666666666666643 2 2333 3667777777777
Q ss_pred cCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCcCch
Q 011044 139 MFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPS 218 (495)
Q Consensus 139 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 218 (495)
.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+.
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 175 (272)
T 3rfs_A 96 QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG 175 (272)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred ccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHH
Confidence 76655555566777777777777777655555566777777777777777655555566777777777777777655555
Q ss_pred hhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeecccccccCCC
Q 011044 219 SIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLT 297 (495)
Q Consensus 219 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 297 (495)
.+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+ .+++|+.|++..|.++|.+|..++.+.
T Consensus 176 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~--------~~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 176 VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC--------TCPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC--------CTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred HhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc--------cCcHHHHHHHHHHhCCCcccCcccccC
Confidence 56667777777777777776666666677777777777776652 345566666666766666666555443
No 73
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.91 E-value=1.1e-25 Score=218.91 Aligned_cols=234 Identities=21% Similarity=0.261 Sum_probs=174.7
Q ss_pred CCccceeeeCCCCCCeEEEEcCCCCCcccCchhccCC--CCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCccccc-
Q 011044 42 FCYWTGVTCDVRSHRVAALNISGLNLTGTIPSELANL--SSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGE- 118 (495)
Q Consensus 42 ~c~w~gv~c~~~~~~l~~L~L~~~~l~~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~- 118 (495)
+..|.++.|+. ..++.++++++.+. +..+..+ +++++|++++|.+.+..+. +..+++|++|++++|.+.+.
T Consensus 36 c~~W~~~~~~~--~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~ 109 (336)
T 2ast_B 36 CKRWYRLASDE--SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVST 109 (336)
T ss_dssp CHHHHHHHTCS--TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHH
T ss_pred HHHHHHHhcCc--hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHH
Confidence 34699988753 56899999999887 4556777 8999999999999877665 66799999999999998655
Q ss_pred CChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCCEEEcccC-cCccc-cCccccCCCCCCEEEccCC-CCCCC-CCh
Q 011044 119 LPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSN-YFSGT-IPKEIGNLTKLTRLNLRQN-KLQGE-IPE 194 (495)
Q Consensus 119 ~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n-~l~~~-~~~~l~~l~~L~~L~L~~n-~l~~~-~~~ 194 (495)
++..+ ..+++|++|++++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++.
T Consensus 110 ~~~~~-~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 188 (336)
T 2ast_B 110 LHGIL-SQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV 188 (336)
T ss_dssp HHHHH-TTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH
T ss_pred HHHHH-hhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH
Confidence 55444 44899999999999988777888888999999999998 67653 5666778889999999998 77653 466
Q ss_pred hhhCcc-cccEEEecCC--cCC-CcCchhhhcCCCCceeeCCCCc-CCCCCCcccccccccceeeccCcc-cccccchhh
Q 011044 195 ELGNLA-ELEMLWLQNN--SLT-GTIPSSIFSLSSLLNLDLSLNN-FTGIIPSSIGNLSSLQKLYLSDNQ-LSGELPANI 268 (495)
Q Consensus 195 ~l~~l~-~L~~L~l~~n--~l~-~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~l~~~~~L~~L~l~~n~-l~~~~~~~~ 268 (495)
.+..++ +|++|++++| .++ +.++..+..+++|++|++++|. +++..+..+..+++|+.|++++|. +.......+
T Consensus 189 ~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l 268 (336)
T 2ast_B 189 AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLEL 268 (336)
T ss_dssp HHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGG
T ss_pred HHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHH
Confidence 677888 8888888888 444 3456667778888888888887 665566667777777777777774 221111122
Q ss_pred hhCCccccccccccc
Q 011044 269 GNNLPSLQTLSLYVN 283 (495)
Q Consensus 269 ~~~l~~L~~L~L~~n 283 (495)
. .+++|+.|++++|
T Consensus 269 ~-~~~~L~~L~l~~~ 282 (336)
T 2ast_B 269 G-EIPTLKTLQVFGI 282 (336)
T ss_dssp G-GCTTCCEEECTTS
T ss_pred h-cCCCCCEEeccCc
Confidence 2 3555555555555
No 74
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=3.2e-23 Score=194.98 Aligned_cols=203 Identities=22% Similarity=0.243 Sum_probs=179.0
Q ss_pred CCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEE
Q 011044 55 HRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLF 134 (495)
Q Consensus 55 ~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~ 134 (495)
++++.|+++++.++.. +.+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+ ++...+..+++|++|+
T Consensus 41 ~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELV 115 (272)
T ss_dssp TTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEE
T ss_pred cceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCc-cChhHhcCCcCCCEEE
Confidence 6899999999998743 4588999999999999999863 478999999999999999965 4444444599999999
Q ss_pred cccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCC
Q 011044 135 LKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTG 214 (495)
Q Consensus 135 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 214 (495)
+++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS 195 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCc
Confidence 99999997777778999999999999999997777778999999999999999998777778999999999999999998
Q ss_pred cCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhh
Q 011044 215 TIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIG 269 (495)
Q Consensus 215 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~ 269 (495)
..+..+..+++|+.|++++|.+.+ .+++|+.+++..|.++|.+|..++
T Consensus 196 ~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~ 243 (272)
T 3rfs_A 196 VPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAG 243 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTS
T ss_pred cCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCccc
Confidence 878888999999999999998764 356789999999999999998765
No 75
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.90 E-value=2.8e-26 Score=240.41 Aligned_cols=326 Identities=14% Similarity=0.105 Sum_probs=182.2
Q ss_pred CeEEEEcCCCC-Ccc-cCchhccCCCCCCEEeCcCCcCCcc----CCccccCCCCCcEEEccCCcccc----cCChhHhh
Q 011044 56 RVAALNISGLN-LTG-TIPSELANLSSLQALDLSFNWFYGS----IPSSIFNMSSLLSIYFNNNTLFG----ELPPNFCN 125 (495)
Q Consensus 56 ~l~~L~L~~~~-l~~-~~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~----~~p~~~~~ 125 (495)
++++|+|++|. ++. .++....++++|++|+|++|.+++. ++..+.++++|++|++++|.+.+ .++.. ..
T Consensus 139 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~-~~ 217 (592)
T 3ogk_B 139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETI-AR 217 (592)
T ss_dssp GCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHH-HH
T ss_pred cCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHH-Hh
Confidence 37777777665 221 1222234667777777777766544 22334556777777777776641 22222 23
Q ss_pred cCCCCCEEEcccccCCccCCcccCCCCCCCEEEcc---------------------------cCcCccccCccccCCCCC
Q 011044 126 QMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLS---------------------------SNYFSGTIPKEIGNLTKL 178 (495)
Q Consensus 126 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~---------------------------~n~l~~~~~~~l~~l~~L 178 (495)
.+++|++|++++|.+.+ ++..+.++++|++|+++ ++. ...+|..+..+++|
T Consensus 218 ~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L 295 (592)
T 3ogk_B 218 NCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQI 295 (592)
T ss_dssp HCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGC
T ss_pred hCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCC
Confidence 36777777777766553 44445555555555554 321 12344445555666
Q ss_pred CEEEccCCCCCCCCC-hhhhCcccccEEEecCCcCCCcCchhhhcCCCCceeeCCC-----------CcCCCC-CCcccc
Q 011044 179 TRLNLRQNKLQGEIP-EELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSL-----------NNFTGI-IPSSIG 245 (495)
Q Consensus 179 ~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~-----------n~l~~~-~~~~l~ 245 (495)
++|++++|.+++... ..+..+++|+.|+++++...+.++..+..+++|++|++++ +.+++. ++....
T Consensus 296 ~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~ 375 (592)
T 3ogk_B 296 RKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQ 375 (592)
T ss_dssp CEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHH
T ss_pred cEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHh
Confidence 666666665443222 2245566666666662221122233334566677777762 333322 111123
Q ss_pred cccccceeeccCcccccccchhhhhCCccccccccc----cceeeec-----ccccccCCCCCCeeeccccc--ccccCC
Q 011044 246 NLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLY----VNDFSGA-----IPKEIGNLTKLTDLYLDQNK--LQGKIP 314 (495)
Q Consensus 246 ~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~----~n~l~~~-----~~~~l~~l~~L~~L~L~~n~--i~~~~~ 314 (495)
.+++|++|+++.+.+++..+..+...+++|+.|+++ .|.+++. ++..+..+++|+.|++++|. +++...
T Consensus 376 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~ 455 (592)
T 3ogk_B 376 GCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL 455 (592)
T ss_dssp HCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHH
T ss_pred hCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHH
Confidence 466777777766666665555555456777777775 3445432 23335567777777776433 444333
Q ss_pred cccc-CCCcCCEEeCcCCccccc-CCcCccCCCCCcEEEccCCcCceecCCCCCCCCCChhhhhhhhcCCCc
Q 011044 315 HEIG-NLRKLEWLMLSHNKLVGV-VPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFLWEYGREG 384 (495)
Q Consensus 315 ~~l~-~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~ 384 (495)
..+. .+++|++|++++|++++. .+..+..+++|++|++++|++++.........+++|++|++++|..+.
T Consensus 456 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 456 SYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp HHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred HHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence 3333 477788888888877652 233345678888888888887543222222346788888887776443
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=7.1e-23 Score=192.46 Aligned_cols=204 Identities=24% Similarity=0.277 Sum_probs=176.3
Q ss_pred CCCCCCCCC--ccceeeeCCC---------CCCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCC
Q 011044 35 NWNTSSSFC--YWTGVTCDVR---------SHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMS 103 (495)
Q Consensus 35 ~w~~~~~~c--~w~gv~c~~~---------~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 103 (495)
.|....+.| .|..+.|... ++.+++|+|++|.+++..+..|.++++|++|++++|.++...+..|.+++
T Consensus 6 ~~~~~~C~c~~~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~ 85 (270)
T 2o6q_A 6 KKDGGVCSCNNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELK 85 (270)
T ss_dssp GGGTCSBEEETTTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCT
T ss_pred CCCCCCCEeCCCCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCC
Confidence 676655555 4677888542 45799999999999988777899999999999999999866666678999
Q ss_pred CCcEEEccCCcccccCChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEc
Q 011044 104 SLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNL 183 (495)
Q Consensus 104 ~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 183 (495)
+|++|++++|.+. .+|...+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++
T Consensus 86 ~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 164 (270)
T 2o6q_A 86 NLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRL 164 (270)
T ss_dssp TCCEEECCSSCCC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCC-cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEe
Confidence 9999999999996 555555555999999999999999877888999999999999999999766667899999999999
Q ss_pred cCCCCCCCCChhhhCcccccEEEecCCcCCCcCchhhhcCCCCceeeCCCCcCCCC
Q 011044 184 RQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGI 239 (495)
Q Consensus 184 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 239 (495)
++|.+++..+..|.++++|++|++++|.+++..+..+..+++|+.|++++|.+...
T Consensus 165 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 165 YNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred cCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 99999977777799999999999999999976666788999999999999987643
No 77
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=6.5e-23 Score=190.52 Aligned_cols=191 Identities=23% Similarity=0.255 Sum_probs=134.2
Q ss_pred CCCccceeeeCCCCCCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCC
Q 011044 41 SFCYWTGVTCDVRSHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELP 120 (495)
Q Consensus 41 ~~c~w~gv~c~~~~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p 120 (495)
.+|.|.|.+|.. ..++++++++.++ .+|..+. ++|++|+|++|.+.+..+..+.++++|++|++++|.+.+..+
T Consensus 3 ~Cp~~~gC~C~~---~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 76 (251)
T 3m19_A 3 TCETVTGCTCNE---GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA 76 (251)
T ss_dssp -CHHHHSSEEEG---GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred cCCCCCceEcCC---CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence 467899999953 5678999999998 5555554 689999999999988877788888888888888888865444
Q ss_pred hhHhhcCCCCCEEEcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcc
Q 011044 121 PNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLA 200 (495)
Q Consensus 121 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 200 (495)
..+. .+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..++
T Consensus 77 ~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 155 (251)
T 3m19_A 77 GVFD-DLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLT 155 (251)
T ss_dssp TTTT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred hHhc-cCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCc
Confidence 4343 377777777777777765556667777777777777777755555566667777777777766655554566666
Q ss_pred cccEEEecCCcCCCcCchhhhcCCCCceeeCCCCcCCC
Q 011044 201 ELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTG 238 (495)
Q Consensus 201 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 238 (495)
+|++|++++|.+++..+..+..+++|+.|++++|.+..
T Consensus 156 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 156 NLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred CCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 66666666666665544455556666666666665543
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=1.3e-22 Score=192.41 Aligned_cols=175 Identities=25% Similarity=0.256 Sum_probs=78.3
Q ss_pred CeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEc
Q 011044 56 RVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFL 135 (495)
Q Consensus 56 ~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l 135 (495)
+++.+++++++++ .+|..+. +++++|++++|.+++..+..+.++++|++|++++|.+.+. +.. ..+++|++|++
T Consensus 11 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~--~~l~~L~~L~L 84 (290)
T 1p9a_G 11 SHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVD--GTLPVLGTLDL 84 (290)
T ss_dssp TCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-ECC--SCCTTCCEEEC
T ss_pred CccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cCC--CCCCcCCEEEC
Confidence 4555555555554 2333222 4555555555555544444555555555555555554322 111 22444455555
Q ss_pred ccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCc
Q 011044 136 KYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGT 215 (495)
Q Consensus 136 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 215 (495)
++|.++ .+|..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|.++..
T Consensus 85 s~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 163 (290)
T 1p9a_G 85 SHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163 (290)
T ss_dssp CSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred CCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCcc
Confidence 444444 3344444444444444444444433333444444444444444444433333334444444444444444432
Q ss_pred CchhhhcCCCCceeeCCCCcCC
Q 011044 216 IPSSIFSLSSLLNLDLSLNNFT 237 (495)
Q Consensus 216 ~~~~l~~l~~L~~L~Ls~n~l~ 237 (495)
.+..+..+++|++|++++|.++
T Consensus 164 ~~~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 164 PAGLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp CTTTTTTCTTCCEEECCSSCCC
T ss_pred CHHHhcCcCCCCEEECCCCcCC
Confidence 2223333444444444444443
No 79
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=1.1e-24 Score=215.89 Aligned_cols=245 Identities=20% Similarity=0.228 Sum_probs=135.3
Q ss_pred cCchhccCCCCCCEEeCcCCcCCccCC----ccccCCCCCcEEEccCC---cccccCChhHh------hcCCCCCEEEcc
Q 011044 70 TIPSELANLSSLQALDLSFNWFYGSIP----SSIFNMSSLLSIYFNNN---TLFGELPPNFC------NQMSNLESLFLK 136 (495)
Q Consensus 70 ~~~~~l~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~l~~n---~~~~~~p~~~~------~~l~~L~~L~l~ 136 (495)
.++..+..+++|++|+|++|.+++..+ ..+..+++|++|++++| .+.+.+|..+. ..+++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 355667778888888888888876533 34667888888888875 33445555542 235666666666
Q ss_pred cccCCc----cCCcccCCCCCCCEEEcccCcCccccCcccc----CC---------CCCCEEEccCCCCC-CCCC---hh
Q 011044 137 YNMFHG----KIPSTLSSCKQLRELSLSSNYFSGTIPKEIG----NL---------TKLTRLNLRQNKLQ-GEIP---EE 195 (495)
Q Consensus 137 ~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~----~l---------~~L~~L~L~~n~l~-~~~~---~~ 195 (495)
+|.+++ .++..+..+++|++|++++|.++...+..+. .+ ++|++|++++|.++ +.++ ..
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 666554 2444555555666666666655432222222 22 45555555555544 1222 23
Q ss_pred hhCcccccEEEecCCcCCCcCchhhhcCCCCceeeCCCCcCCC---CCCcccccccccceeeccCcccc----cccchhh
Q 011044 196 LGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTG---IIPSSIGNLSSLQKLYLSDNQLS----GELPANI 268 (495)
Q Consensus 196 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~---~~~~~l~~~~~L~~L~l~~n~l~----~~~~~~~ 268 (495)
+..+++|++|++++|.++.. + ..+..+..+++|+.|++++|.++ ..++..+
T Consensus 183 l~~~~~L~~L~L~~n~l~~~----------------------g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l 240 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPE----------------------GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL 240 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHH----------------------HHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHG
T ss_pred HHhCCCcCEEECcCCCCCHh----------------------HHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHH
Confidence 33444444444444444310 1 12223444555555555555543 2333333
Q ss_pred hhCCccccccccccceeeec----ccccc--cCCCCCCeeecccccccc----cCCccc-cCCCcCCEEeCcCCcccccC
Q 011044 269 GNNLPSLQTLSLYVNDFSGA----IPKEI--GNLTKLTDLYLDQNKLQG----KIPHEI-GNLRKLEWLMLSHNKLVGVV 337 (495)
Q Consensus 269 ~~~l~~L~~L~L~~n~l~~~----~~~~l--~~l~~L~~L~L~~n~i~~----~~~~~l-~~l~~L~~L~l~~n~l~~~~ 337 (495)
. .+++|++|++++|.+++. ++..+ ..+++|+.|+|++|.+++ .++..+ .++++|++|++++|++.+..
T Consensus 241 ~-~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 241 K-SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp G-GCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred c-cCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 3 455566666666655443 33444 236777777777777775 355555 45777888888888777544
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=1.9e-22 Score=191.29 Aligned_cols=179 Identities=22% Similarity=0.264 Sum_probs=85.7
Q ss_pred ccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcccccCCccCCcccCCCCCC
Q 011044 75 LANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQL 154 (495)
Q Consensus 75 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 154 (495)
+++++++++++++++.++ .+|..+. +++++|++++|.+.+..+..+.. +++|++|++++|.+++. +. ...+++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~-~~-~~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMP-YTRLTQLNLDRAELTKL-QV-DGTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTT-CTTCCEEECTTSCCCEE-EC-CSCCTTC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhc-CCCCCEEECCCCccCcc-cC-CCCCCcC
Confidence 556666777777766665 4444332 45566666666654333333333 55555555555555432 11 1444555
Q ss_pred CEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCcCchhhhcCCCCceeeCCCC
Q 011044 155 RELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLN 234 (495)
Q Consensus 155 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n 234 (495)
++|++++|.++ .+|..+..+++|++|++++|.+++..+..|.++++|++|++++|.+++..+..+..+++|+.|++++|
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 55555555554 34444444455555555555544433344444444444444444444333333344444444444444
Q ss_pred cCCCCCCcccccccccceeeccCccc
Q 011044 235 NFTGIIPSSIGNLSSLQKLYLSDNQL 260 (495)
Q Consensus 235 ~l~~~~~~~l~~~~~L~~L~l~~n~l 260 (495)
++++..+..+..+++|+.|++++|.+
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l 184 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSL 184 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcC
Confidence 44433333333344444444444433
No 81
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=2.8e-24 Score=210.94 Aligned_cols=258 Identities=22% Similarity=0.215 Sum_probs=146.7
Q ss_pred EEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCC----ccccCCC-CCcEEEccCCcccccCChhHhhc----CCC
Q 011044 59 ALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIP----SSIFNMS-SLLSIYFNNNTLFGELPPNFCNQ----MSN 129 (495)
Q Consensus 59 ~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~----~~l~~l~-~L~~L~l~~n~~~~~~p~~~~~~----l~~ 129 (495)
.++++++.+++.+|..+...++|++|+|++|.+++..+ ..+.+++ +|++|++++|.+.+..+..+... .++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 35678888888887777777778888888888876655 5677777 78888888888866655555441 277
Q ss_pred CCEEEcccccCCccCCcc----cCCC-CCCCEEEcccCcCccccCcccc----C-CCCCCEEEccCCCCCCCCCh----h
Q 011044 130 LESLFLKYNMFHGKIPST----LSSC-KQLRELSLSSNYFSGTIPKEIG----N-LTKLTRLNLRQNKLQGEIPE----E 195 (495)
Q Consensus 130 L~~L~l~~n~l~~~~~~~----l~~l-~~L~~L~l~~n~l~~~~~~~l~----~-l~~L~~L~L~~n~l~~~~~~----~ 195 (495)
|++|++++|.+++..+.. +..+ ++|++|++++|.+++..+..+. . .++|++|++++|.+++..+. .
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 777777777776554443 3333 6777777777776654443332 2 24667777776666543322 2
Q ss_pred hhCcc-cccEEEecCCcCCCcCchhhh----cC-CCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhh
Q 011044 196 LGNLA-ELEMLWLQNNSLTGTIPSSIF----SL-SSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIG 269 (495)
Q Consensus 196 l~~l~-~L~~L~l~~n~l~~~~~~~l~----~l-~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~ 269 (495)
+..++ +|++|++++|.+++..+..+. .+ ++|++|++++|.+++..... ++..+.
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~--------------------l~~~l~ 221 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAE--------------------LAYIFS 221 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHH--------------------HHHHHH
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHH--------------------HHHHHh
Confidence 23333 566666666666544433222 23 35555555555554321111 122222
Q ss_pred hCCccccccccccceeeeccc----ccccCCCCCCeeecccccccc-------cCCccccCCCcCCEEeCcCCccccc
Q 011044 270 NNLPSLQTLSLYVNDFSGAIP----KEIGNLTKLTDLYLDQNKLQG-------KIPHEIGNLRKLEWLMLSHNKLVGV 336 (495)
Q Consensus 270 ~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~L~~n~i~~-------~~~~~l~~l~~L~~L~l~~n~l~~~ 336 (495)
...++|++|++++|.+++..+ ..+..+++|+.|++++|.+.+ .++..+..+++|+.|++++|++.+.
T Consensus 222 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 222 SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred cCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 112344455555544443222 223444556666666665332 1223455666677777777766554
No 82
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=3.4e-24 Score=210.39 Aligned_cols=257 Identities=18% Similarity=0.172 Sum_probs=142.0
Q ss_pred EeCcCCcCCccCCccccCCCCCcEEEccCCcccccCCh---hHhhcCC-CCCEEEcccccCCccCCcccCCC-----CCC
Q 011044 84 LDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPP---NFCNQMS-NLESLFLKYNMFHGKIPSTLSSC-----KQL 154 (495)
Q Consensus 84 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~---~~~~~l~-~L~~L~l~~n~l~~~~~~~l~~l-----~~L 154 (495)
+.++.|.+++.+|..+...++|++|++++|.+.+..+. ..+..++ +|++|++++|.+++..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 45566666655555544455566666666665433321 1112244 55555555555554433333332 445
Q ss_pred CEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCc-ccccEEEecCCcCCCcCchhhh----c-CCCCce
Q 011044 155 RELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNL-AELEMLWLQNNSLTGTIPSSIF----S-LSSLLN 228 (495)
Q Consensus 155 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~l~----~-l~~L~~ 228 (495)
++|++++|.+++..+..+... +..+ ++|++|++++|.+++..+..+. . .++|++
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~--------------------l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~ 142 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKT--------------------LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITS 142 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHH--------------------HHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCE
T ss_pred cEEECcCCcCChHHHHHHHHH--------------------HHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeE
Confidence 555555544443333222111 1222 4455555555554433332222 2 235555
Q ss_pred eeCCCCcCCCCCCc----cccccc-ccceeeccCcccccccchhhh---hCC-ccccccccccceeeec----ccccccC
Q 011044 229 LDLSLNNFTGIIPS----SIGNLS-SLQKLYLSDNQLSGELPANIG---NNL-PSLQTLSLYVNDFSGA----IPKEIGN 295 (495)
Q Consensus 229 L~Ls~n~l~~~~~~----~l~~~~-~L~~L~l~~n~l~~~~~~~~~---~~l-~~L~~L~L~~n~l~~~----~~~~l~~ 295 (495)
|++++|.+++..+. .+..++ +|++|++++|.+++..+..+. ..+ ++|++|++++|.+++. ++..+..
T Consensus 143 L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~ 222 (362)
T 3goz_A 143 LNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS 222 (362)
T ss_dssp EECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH
T ss_pred EEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhc
Confidence 55555555533222 222333 666666666666544433222 133 4777777777777642 3444544
Q ss_pred -CCCCCeeecccccccccCC----ccccCCCcCCEEeCcCCccccc-------CCcCccCCCCCcEEEccCCcCcee
Q 011044 296 -LTKLTDLYLDQNKLQGKIP----HEIGNLRKLEWLMLSHNKLVGV-------VPAPIFNLSTLISLQLHNNSLSGS 360 (495)
Q Consensus 296 -l~~L~~L~L~~n~i~~~~~----~~l~~l~~L~~L~l~~n~l~~~-------~~~~~~~l~~L~~L~l~~n~l~~~ 360 (495)
.++|+.|++++|.+++..+ ..+..+++|++|++++|.+.+. ++..+..+++|+.|++++|++.+.
T Consensus 223 ~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 223 IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp SCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred CCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 4599999999999986443 3457789999999999984432 334667889999999999998754
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=1.2e-24 Score=215.53 Aligned_cols=234 Identities=20% Similarity=0.245 Sum_probs=167.0
Q ss_pred CCCCCEEEcccccCCcc----CCcccCCCCCCCEEEcccC---cCccccCccc-------cCCCCCCEEEccCCCCCC--
Q 011044 127 MSNLESLFLKYNMFHGK----IPSTLSSCKQLRELSLSSN---YFSGTIPKEI-------GNLTKLTRLNLRQNKLQG-- 190 (495)
Q Consensus 127 l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n---~l~~~~~~~l-------~~l~~L~~L~L~~n~l~~-- 190 (495)
+++|++|++++|.++.. ++..+..+++|++|++++| .+++.+|..+ ..+++|++|++++|.+.+
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 55555555555555443 2223555666666666664 3333444433 567777888888777775
Q ss_pred --CCChhhhCcccccEEEecCCcCCCcCchh----hhcC---------CCCceeeCCCCcCCC-CCC---cccccccccc
Q 011044 191 --EIPEELGNLAELEMLWLQNNSLTGTIPSS----IFSL---------SSLLNLDLSLNNFTG-IIP---SSIGNLSSLQ 251 (495)
Q Consensus 191 --~~~~~l~~l~~L~~L~l~~n~l~~~~~~~----l~~l---------~~L~~L~Ls~n~l~~-~~~---~~l~~~~~L~ 251 (495)
.++..+..+++|++|++++|.++...+.. +..+ ++|++|++++|.++. .++ ..+..+++|+
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 190 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence 35566777788888888888776433333 3333 889999999998873 333 3566788999
Q ss_pred eeeccCcccccc-----cchhhhhCCccccccccccceee----ecccccccCCCCCCeeeccccccccc----CCccc-
Q 011044 252 KLYLSDNQLSGE-----LPANIGNNLPSLQTLSLYVNDFS----GAIPKEIGNLTKLTDLYLDQNKLQGK----IPHEI- 317 (495)
Q Consensus 252 ~L~l~~n~l~~~-----~~~~~~~~l~~L~~L~L~~n~l~----~~~~~~l~~l~~L~~L~L~~n~i~~~----~~~~l- 317 (495)
+|++++|.++.. .+..+. .+++|+.|+|++|.++ ..++..+..+++|+.|+|++|.+++. ++..+
T Consensus 191 ~L~L~~n~l~~~g~~~l~~~~l~-~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~ 269 (386)
T 2ca6_A 191 TVKMVQNGIRPEGIEHLLLEGLA-YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFS 269 (386)
T ss_dssp EEECCSSCCCHHHHHHHHHTTGG-GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHH
T ss_pred EEECcCCCCCHhHHHHHHHHHhh-cCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHh
Confidence 999999988732 221333 7899999999999996 56778889999999999999999864 45556
Q ss_pred -cCCCcCCEEeCcCCcccc----cCCcCc-cCCCCCcEEEccCCcCceec
Q 011044 318 -GNLRKLEWLMLSHNKLVG----VVPAPI-FNLSTLISLQLHNNSLSGSL 361 (495)
Q Consensus 318 -~~l~~L~~L~l~~n~l~~----~~~~~~-~~l~~L~~L~l~~n~l~~~~ 361 (495)
+.+++|++|++++|.+.+ .+|..+ .++++|++|++++|++++..
T Consensus 270 ~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 270 KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp TCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred hccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 348999999999999997 466666 56899999999999998543
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=9e-24 Score=205.23 Aligned_cols=251 Identities=18% Similarity=0.207 Sum_probs=162.4
Q ss_pred CcEEEccCCcccccCChhHhhcC--CCCCEEEcccccCCccCCcccCCCCCCCEEEcccCcCccc-cCccccCCCCCCEE
Q 011044 105 LLSIYFNNNTLFGELPPNFCNQM--SNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGT-IPKEIGNLTKLTRL 181 (495)
Q Consensus 105 L~~L~l~~n~~~~~~p~~~~~~l--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L 181 (495)
++.++++++.+. +..+.. + ++++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|
T Consensus 49 ~~~l~l~~~~~~---~~~~~~-~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGR-LLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp SSEEECTTCBCC---HHHHHH-HHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred heeeccccccCC---HHHHHh-hhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 556666665553 222222 4 6677777777776654443 44667777777777776644 56666677777777
Q ss_pred EccCCCCCCCCChhhhCcccccEEEecCC-cCCCc-CchhhhcCCCCceeeCCCC-cCCCC-CCccccccc-ccceeecc
Q 011044 182 NLRQNKLQGEIPEELGNLAELEMLWLQNN-SLTGT-IPSSIFSLSSLLNLDLSLN-NFTGI-IPSSIGNLS-SLQKLYLS 256 (495)
Q Consensus 182 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n-~l~~~-~~~~l~~l~~L~~L~Ls~n-~l~~~-~~~~l~~~~-~L~~L~l~ 256 (495)
++++|.+++..+..++.+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|++|+++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 77777776666666777777777777777 45542 4555667777777777777 66643 345566677 77788887
Q ss_pred Cc--ccc-cccchhhhhCCccccccccccce-eeecccccccCCCCCCeeeccccc-ccccCCccccCCCcCCEEeCcCC
Q 011044 257 DN--QLS-GELPANIGNNLPSLQTLSLYVND-FSGAIPKEIGNLTKLTDLYLDQNK-LQGKIPHEIGNLRKLEWLMLSHN 331 (495)
Q Consensus 257 ~n--~l~-~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~-i~~~~~~~l~~l~~L~~L~l~~n 331 (495)
+| .++ +.++..+. .+++|++|++++|. +++..+..+..+++|+.|++++|. +.......+..+++|++|++++|
T Consensus 204 ~~~~~~~~~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVR-RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp SCGGGSCHHHHHHHHH-HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCcccCCHHHHHHHHh-hCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 77 344 23344333 67788888888887 666666677778888888888884 33322235677888888888888
Q ss_pred cccccCCcCccCC-CCCcEEEccCCcCceecCCCC
Q 011044 332 KLVGVVPAPIFNL-STLISLQLHNNSLSGSLPSSA 365 (495)
Q Consensus 332 ~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~ 365 (495)
+... .+..+ ..+..|++++|++++..|...
T Consensus 283 -i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~~~ 313 (336)
T 2ast_B 283 -VPDG---TLQLLKEALPHLQINCSHFTTIARPTI 313 (336)
T ss_dssp -SCTT---CHHHHHHHSTTSEESCCCSCCTTCSSC
T ss_pred -cCHH---HHHHHHhhCcceEEecccCccccCCcc
Confidence 3321 23333 236666678888887666544
No 85
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.88 E-value=2.6e-25 Score=233.02 Aligned_cols=328 Identities=14% Similarity=0.107 Sum_probs=203.9
Q ss_pred CCeEEEEcCCCCCcccCchhccC-CCC-CCEEeCcCCc-CCc-cCCccccCCCCCcEEEccCCcccccCC---hhHhhcC
Q 011044 55 HRVAALNISGLNLTGTIPSELAN-LSS-LQALDLSFNW-FYG-SIPSSIFNMSSLLSIYFNNNTLFGELP---PNFCNQM 127 (495)
Q Consensus 55 ~~l~~L~L~~~~l~~~~~~~l~~-l~~-L~~L~L~~n~-l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~p---~~~~~~l 127 (495)
+++++|+|+++.+++..+..+.. ++. |++|+|++|. ++. .++....++++|++|++++|.+.+.-. ..+...+
T Consensus 112 ~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~ 191 (592)
T 3ogk_B 112 RQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHN 191 (592)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHC
T ss_pred CCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcC
Confidence 68999999999998877777766 445 9999999986 221 122334578999999999999865532 2244459
Q ss_pred CCCCEEEcccccCCc----cCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCC--------------
Q 011044 128 SNLESLFLKYNMFHG----KIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQ-------------- 189 (495)
Q Consensus 128 ~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-------------- 189 (495)
++|++|++++|.+++ .++..+.++++|++|++++|.+.+ ++..+..+++|++|+++.....
T Consensus 192 ~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~ 270 (592)
T 3ogk_B 192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPR 270 (592)
T ss_dssp CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCT
T ss_pred CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccc
Confidence 999999999999872 345556788999999999998875 5667777788888887643211
Q ss_pred ------------CCCChhhhCcccccEEEecCCcCCCcCc-hhhhcCCCCceeeCCCCcCCCCCCcccccccccceeecc
Q 011044 190 ------------GEIPEELGNLAELEMLWLQNNSLTGTIP-SSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLS 256 (495)
Q Consensus 190 ------------~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~ 256 (495)
..+|..+..+++|++|++++|.+++... ..+..+++|++|+++++...+.++.....+++|++|+++
T Consensus 271 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~ 350 (592)
T 3ogk_B 271 KLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIE 350 (592)
T ss_dssp TCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred cccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEee
Confidence 1233334445555555555555442222 223455555555555221111122222445666666666
Q ss_pred C-----------cccccccchhhhhCCccccccccccceeeecccccccC-CCCCCeeecc----ccccccc-----CCc
Q 011044 257 D-----------NQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGN-LTKLTDLYLD----QNKLQGK-----IPH 315 (495)
Q Consensus 257 ~-----------n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L~L~----~n~i~~~-----~~~ 315 (495)
+ +.+++.....+...+++|++|+++.+.+++..+..+.. +++|+.|+++ .|.+++. ++.
T Consensus 351 ~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~ 430 (592)
T 3ogk_B 351 RGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRS 430 (592)
T ss_dssp CCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHH
T ss_pred cCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHH
Confidence 2 34443323333335667777777666666554444444 6677777775 4455532 222
Q ss_pred cccCCCcCCEEeCcCCc--ccccCCcCcc-CCCCCcEEEccCCcCceecCCCCCCCCCChhhhhhhhcCCC
Q 011044 316 EIGNLRKLEWLMLSHNK--LVGVVPAPIF-NLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFLWEYGRE 383 (495)
Q Consensus 316 ~l~~l~~L~~L~l~~n~--l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~ 383 (495)
.+..+++|++|++++|. +.+..+..+. .+++|+.|++++|++++.........+++|+.|++.+|..+
T Consensus 431 ~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~ 501 (592)
T 3ogk_B 431 LLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFS 501 (592)
T ss_dssp HHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCB
T ss_pred HHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCc
Confidence 35567777777776543 4443333333 36778888888888764322222235678888888877743
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=2.5e-22 Score=185.21 Aligned_cols=196 Identities=19% Similarity=0.218 Sum_probs=122.3
Q ss_pred CCCEEeCcCCcCCccCCccccCCCCCcEEEccCCc-ccccCChhHhhcCCCCCEEEccc-ccCCccCCcccCCCCCCCEE
Q 011044 80 SLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNT-LFGELPPNFCNQMSNLESLFLKY-NMFHGKIPSTLSSCKQLREL 157 (495)
Q Consensus 80 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-~~~~~p~~~~~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L 157 (495)
+|++|++++|.+++..+..+.++++|++|++++|. + +.++...+..+++|++|++++ |.++...+..|.++++|++|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l-~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTL-QQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSC-CEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCc-ceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 56666666666665555566666666666666665 4 344443333466677777766 66665445566666777777
Q ss_pred EcccCcCccccCccccCCCCCC---EEEccCC-CCCCCCChhhhCccccc-EEEecCCcCCCcCchhhhcCCCCceeeCC
Q 011044 158 SLSSNYFSGTIPKEIGNLTKLT---RLNLRQN-KLQGEIPEELGNLAELE-MLWLQNNSLTGTIPSSIFSLSSLLNLDLS 232 (495)
Q Consensus 158 ~l~~n~l~~~~~~~l~~l~~L~---~L~L~~n-~l~~~~~~~l~~l~~L~-~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 232 (495)
++++|.+++ +|. +..+++|+ +|++++| .+.+..+..|.++++|+ +|++++|.++ .+|......++|++|+++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLN 187 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECT
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcC
Confidence 777776664 444 66666666 7777777 66644445566677777 7777777766 444433333667777777
Q ss_pred CCc-CCCCCCcccccc-cccceeeccCcccccccchhhhhCCccccccccccc
Q 011044 233 LNN-FTGIIPSSIGNL-SSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVN 283 (495)
Q Consensus 233 ~n~-l~~~~~~~l~~~-~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n 283 (495)
+|. +++..+..+..+ ++|+.|++++|.++ .+|.. .+++|+.|++.++
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT---TCTTCSEEECTTC
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh---HhccCceeeccCc
Confidence 774 665555666666 77777777777776 44443 3566666666554
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=7.7e-23 Score=196.27 Aligned_cols=226 Identities=21% Similarity=0.209 Sum_probs=160.9
Q ss_pred CCCCEEeCcCCcCCccCCc---cccCCCCCcEEEccCCcccccCChhHh-hcCCCCCEEEcccccCCccCC----cccCC
Q 011044 79 SSLQALDLSFNWFYGSIPS---SIFNMSSLLSIYFNNNTLFGELPPNFC-NQMSNLESLFLKYNMFHGKIP----STLSS 150 (495)
Q Consensus 79 ~~L~~L~L~~n~l~~~~~~---~l~~l~~L~~L~l~~n~~~~~~p~~~~-~~l~~L~~L~l~~n~l~~~~~----~~l~~ 150 (495)
..++.|.+.++.+...... .+..+++|++|++++|.+.+..|..+. ..+++|++|++++|.+++..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 3467777777666432111 122345688888888887777776663 447788888888888776444 33456
Q ss_pred CCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCC--C--ChhhhCcccccEEEecCCcCCCcCch----hhhc
Q 011044 151 CKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGE--I--PEELGNLAELEMLWLQNNSLTGTIPS----SIFS 222 (495)
Q Consensus 151 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--~--~~~l~~l~~L~~L~l~~n~l~~~~~~----~l~~ 222 (495)
+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. + +..+..+++|++|++++|.++. ++. .+..
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhc
Confidence 77888888888888777777778888888888888876532 1 1223577888888888888862 222 2467
Q ss_pred CCCCceeeCCCCcCCCCCCcccccc---cccceeeccCcccccccchhhhhCCccccccccccceeeecccccccCCCCC
Q 011044 223 LSSLLNLDLSLNNFTGIIPSSIGNL---SSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKL 299 (495)
Q Consensus 223 l~~L~~L~Ls~n~l~~~~~~~l~~~---~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 299 (495)
+++|++|++++|.+++..|..+..+ ++|++|++++|.++ .+|..+. ++|+.|++++|.+++. |. +..+++|
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~---~~L~~L~Ls~N~l~~~-~~-~~~l~~L 296 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP---AKLRVLDLSSNRLNRA-PQ-PDELPEV 296 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC---SCCSCEECCSCCCCSC-CC-TTSCCCC
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc---CCCCEEECCCCcCCCC-ch-hhhCCCc
Confidence 7888888888888887767666665 58888888888888 6776543 6888999999988753 32 5778899
Q ss_pred Ceeecccccccc
Q 011044 300 TDLYLDQNKLQG 311 (495)
Q Consensus 300 ~~L~L~~n~i~~ 311 (495)
+.|++++|++++
T Consensus 297 ~~L~L~~N~l~~ 308 (310)
T 4glp_A 297 DNLTLDGNPFLV 308 (310)
T ss_dssp SCEECSSTTTSC
T ss_pred cEEECcCCCCCC
Confidence 999999998874
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=1.1e-22 Score=195.07 Aligned_cols=229 Identities=18% Similarity=0.170 Sum_probs=134.5
Q ss_pred CCCCcEEEccCCcccccCChhHh--hcCCCCCEEEcccccCCccCCccc--CCCCCCCEEEcccCcCccccC----cccc
Q 011044 102 MSSLLSIYFNNNTLFGELPPNFC--NQMSNLESLFLKYNMFHGKIPSTL--SSCKQLRELSLSSNYFSGTIP----KEIG 173 (495)
Q Consensus 102 l~~L~~L~l~~n~~~~~~p~~~~--~~l~~L~~L~l~~n~l~~~~~~~l--~~l~~L~~L~l~~n~l~~~~~----~~l~ 173 (495)
...++.+.+.++.+....-..+. ..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+.
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 34577788877766432111111 114567777777777776666666 667777777777777665433 2233
Q ss_pred CCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCc--CchhhhcCCCCceeeCCCCcCCCCCCcccccccccc
Q 011044 174 NLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGT--IPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQ 251 (495)
Q Consensus 174 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~ 251 (495)
.+++|++|++++|.+.+..+..++.+++|++|++++|.+.+. ++. +..++.+++|+
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~----------------------~~~~~~l~~L~ 200 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMA----------------------ALCPHKFPAIQ 200 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHT----------------------TSCTTSSCCCC
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhH----------------------HHhhhcCCCCC
Confidence 456666666666666555555555566666666666554321 100 11123445555
Q ss_pred eeeccCcccccccch---hhhhCCccccccccccceeeecccccccCC---CCCCeeecccccccccCCccccCCCcCCE
Q 011044 252 KLYLSDNQLSGELPA---NIGNNLPSLQTLSLYVNDFSGAIPKEIGNL---TKLTDLYLDQNKLQGKIPHEIGNLRKLEW 325 (495)
Q Consensus 252 ~L~l~~n~l~~~~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l---~~L~~L~L~~n~i~~~~~~~l~~l~~L~~ 325 (495)
+|++++|.++ .++. .+...+++|++|++++|.+.+..|..+..+ ++|++|++++|+++ .+|..+. ++|++
T Consensus 201 ~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~ 276 (310)
T 4glp_A 201 NLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRV 276 (310)
T ss_dssp SCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSC
T ss_pred EEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCE
Confidence 5555555554 2221 122355667777777777666555555554 57777777777777 5555543 67777
Q ss_pred EeCcCCcccccCCcCccCCCCCcEEEccCCcCc
Q 011044 326 LMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLS 358 (495)
Q Consensus 326 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 358 (495)
|++++|++.+. |. +..+++|+.|++++|+++
T Consensus 277 L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 277 LDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp EECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred EECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence 77777777753 32 566777778888877775
No 89
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.87 E-value=6.7e-25 Score=230.03 Aligned_cols=326 Identities=15% Similarity=0.152 Sum_probs=167.6
Q ss_pred CCeEEEEcCCCCCcccCchhcc-CCCCCCEEeCcCC-cCCcc-CCccccCCCCCcEEEccCCcccccCChhH---hhcCC
Q 011044 55 HRVAALNISGLNLTGTIPSELA-NLSSLQALDLSFN-WFYGS-IPSSIFNMSSLLSIYFNNNTLFGELPPNF---CNQMS 128 (495)
Q Consensus 55 ~~l~~L~L~~~~l~~~~~~~l~-~l~~L~~L~L~~n-~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~p~~~---~~~l~ 128 (495)
+++++|+|+++.+++..+..+. .+++|++|++++| .+++. ++..+.++++|++|++++|.+.+..+..+ ...++
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 5788888888888776666665 5778888888877 44432 33334467778888888777654433322 22356
Q ss_pred CCCEEEccccc--CCcc-CCcccCCCCCCCEEEcccCcCccccCccccCC------------------------------
Q 011044 129 NLESLFLKYNM--FHGK-IPSTLSSCKQLRELSLSSNYFSGTIPKEIGNL------------------------------ 175 (495)
Q Consensus 129 ~L~~L~l~~n~--l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l------------------------------ 175 (495)
+|++|++++|. +... +...+.++++|++|++++|...+.++..+..+
T Consensus 185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~ 264 (594)
T 2p1m_B 185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGC 264 (594)
T ss_dssp CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTC
T ss_pred cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcC
Confidence 77777777765 2211 11122345667777776652111133333333
Q ss_pred ------------------------CCCCEEEccCCCCCCCCC-hhhhCcccccEEEecCCcCCCc-CchhhhcCCCCcee
Q 011044 176 ------------------------TKLTRLNLRQNKLQGEIP-EELGNLAELEMLWLQNNSLTGT-IPSSIFSLSSLLNL 229 (495)
Q Consensus 176 ------------------------~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L 229 (495)
++|++|++++|.+++... ..+..+++|++|++++| ++.. ++.....+++|++|
T Consensus 265 ~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L 343 (594)
T 2p1m_B 265 KELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLREL 343 (594)
T ss_dssp TTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEE
T ss_pred CCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEE
Confidence 444444444444332111 11234444444444444 2211 11111234555555
Q ss_pred eCCC---------CcCCCCCCccc-ccccccceeeccCcccccccchhhhhCCccccccccc--c----ceeee-----c
Q 011044 230 DLSL---------NNFTGIIPSSI-GNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLY--V----NDFSG-----A 288 (495)
Q Consensus 230 ~Ls~---------n~l~~~~~~~l-~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~--~----n~l~~-----~ 288 (495)
++.+ +.+++.....+ ..+++|+.|.+..+.+++.....+...+++|+.|+++ + +.+++ .
T Consensus 344 ~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~ 423 (594)
T 2p1m_B 344 RVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIG 423 (594)
T ss_dssp EEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHH
T ss_pred EEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhH
Confidence 5422 12221111111 1245556665555555544444444345666666666 2 22321 1
Q ss_pred ccccccCCCCCCeeecccccccccCCccccC-CCcCCEEeCcCCcccccCCcCc-cCCCCCcEEEccCCcCceecCCCCC
Q 011044 289 IPKEIGNLTKLTDLYLDQNKLQGKIPHEIGN-LRKLEWLMLSHNKLVGVVPAPI-FNLSTLISLQLHNNSLSGSLPSSAD 366 (495)
Q Consensus 289 ~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~-l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~ 366 (495)
++..+..+++|+.|++++ .+++..+..+.. +++|++|++++|.+++..+..+ ..+++|+.|++++|++++.......
T Consensus 424 ~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~ 502 (594)
T 2p1m_B 424 FGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANA 502 (594)
T ss_dssp HHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTG
T ss_pred HHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHH
Confidence 112244556666666655 444433333333 6677777777777655443333 4567777777777777543332233
Q ss_pred CCCCChhhhhhhhcCC
Q 011044 367 VPLPNLEELFLWEYGR 382 (495)
Q Consensus 367 ~~l~~L~~L~l~~~~~ 382 (495)
..+++|+.|++++|..
T Consensus 503 ~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 503 SKLETMRSLWMSSCSV 518 (594)
T ss_dssp GGGGGSSEEEEESSCC
T ss_pred HhCCCCCEEeeeCCCC
Confidence 3467777777777755
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=8.9e-22 Score=181.44 Aligned_cols=196 Identities=19% Similarity=0.234 Sum_probs=93.5
Q ss_pred CCCEEEcccccCCccCCcccCCCCCCCEEEcccCc-CccccCccccCCCCCCEEEccC-CCCCCCCChhhhCcccccEEE
Q 011044 129 NLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNY-FSGTIPKEIGNLTKLTRLNLRQ-NKLQGEIPEELGNLAELEMLW 206 (495)
Q Consensus 129 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~ 206 (495)
+|++|++++|.+++..+..|.++++|++|++++|. ++...+..|..+++|++|++++ |.+++..+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 34444444444443333344444444455544443 4433333444445555555544 444433333444455555555
Q ss_pred ecCCcCCCcCchhhhcCCCCc---eeeCCCC-cCCCCCCcccccccccc-eeeccCcccccccchhhhhCCccccccccc
Q 011044 207 LQNNSLTGTIPSSIFSLSSLL---NLDLSLN-NFTGIIPSSIGNLSSLQ-KLYLSDNQLSGELPANIGNNLPSLQTLSLY 281 (495)
Q Consensus 207 l~~n~l~~~~~~~l~~l~~L~---~L~Ls~n-~l~~~~~~~l~~~~~L~-~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~ 281 (495)
+++|.+++ +|. +..+++|+ +|++++| .+++..+..+..+++|+ .|++++|.++ .+|...+.. ++|+.|+++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-CEEEEEECT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-CCCCEEEcC
Confidence 55554443 332 44444444 5555555 45444444455555555 5555555555 444433322 455555555
Q ss_pred cce-eeecccccccCC-CCCCeeecccccccccCCccccCCCcCCEEeCcCC
Q 011044 282 VND-FSGAIPKEIGNL-TKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHN 331 (495)
Q Consensus 282 ~n~-l~~~~~~~l~~l-~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n 331 (495)
+|. +++..+..+..+ ++|+.|++++|++++ +|.. .+++|+.|+++++
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence 553 544444445555 555555555555552 2222 3445555555443
No 91
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=8e-21 Score=176.37 Aligned_cols=181 Identities=23% Similarity=0.267 Sum_probs=148.3
Q ss_pred CCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCCEEE
Q 011044 79 SSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELS 158 (495)
Q Consensus 79 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 158 (495)
...++++++++.++ .+|..+. +++++|++++|.+.+..+..+.. +++|++|++++|.+++..+..+..+++|++|+
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRG-LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG 89 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTT-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcC-cccCCEEECCCCcCCccCHhHhccCCcCCEEE
Confidence 35678899988887 6666554 58899999999987655555544 88999999999998877777788889999999
Q ss_pred cccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCcCchhhhcCCCCceeeCCCCcCCC
Q 011044 159 LSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTG 238 (495)
Q Consensus 159 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 238 (495)
+++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++
T Consensus 90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence 99998887767778888899999999998886666667888899999999998886666678888899999999998888
Q ss_pred CCCcccccccccceeeccCcccccc
Q 011044 239 IIPSSIGNLSSLQKLYLSDNQLSGE 263 (495)
Q Consensus 239 ~~~~~l~~~~~L~~L~l~~n~l~~~ 263 (495)
..+..+..+++|+.|++++|.+...
T Consensus 170 ~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 170 VPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCHHHHhCCCCCCEEEeeCCceeCC
Confidence 7777788888888889888888644
No 92
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=8.8e-21 Score=181.55 Aligned_cols=188 Identities=22% Similarity=0.364 Sum_probs=84.3
Q ss_pred CeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEc
Q 011044 56 RVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFL 135 (495)
Q Consensus 56 ~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l 135 (495)
++++|+++++.++. ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.+.+ ++ .+.. +++|++|++
T Consensus 42 ~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~-~~~~-l~~L~~L~l 114 (308)
T 1h6u_A 42 GITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS-AIAG-LQSIKTLDL 114 (308)
T ss_dssp TCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GGTT-CTTCCEEEC
T ss_pred CcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-ch-hhcC-CCCCCEEEC
Confidence 45555555555543 22 35555555555555555543222 5555555555555555432 22 2222 455555555
Q ss_pred ccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCc
Q 011044 136 KYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGT 215 (495)
Q Consensus 136 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 215 (495)
++|.+++ ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++. +. +..+++|+.|++++|.+++.
T Consensus 115 ~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~ 188 (308)
T 1h6u_A 115 TSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISDI 188 (308)
T ss_dssp TTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC
T ss_pred CCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCcC
Confidence 5555443 22 14444555555555554443211 44444444444444444422 11 44444444444444444422
Q ss_pred CchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCccc
Q 011044 216 IPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQL 260 (495)
Q Consensus 216 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l 260 (495)
.+ +..+++|++|++++|.+++..+ +..+++|+.|++++|.+
T Consensus 189 ~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 189 SP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTI 229 (308)
T ss_dssp GG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEE
T ss_pred hh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCee
Confidence 11 3444444444444444443321 33344444444444443
No 93
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.86 E-value=3.3e-21 Score=173.60 Aligned_cols=187 Identities=25% Similarity=0.364 Sum_probs=134.2
Q ss_pred CCCCccceeeeCCCCCCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccC
Q 011044 40 SSFCYWTGVTCDVRSHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGEL 119 (495)
Q Consensus 40 ~~~c~w~gv~c~~~~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 119 (495)
.+.|.|.++.|.. ++++ .+|..+ .++|++|++++|.+++..+..+.++++|++|++++|.+. .+
T Consensus 4 ~C~C~~~~v~c~~------------~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~ 67 (208)
T 2o6s_A 4 RCSCSGTTVECYS------------QGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SL 67 (208)
T ss_dssp TCEEETTEEECCS------------SCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CC
T ss_pred CCEECCCEEEecC------------CCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-cc
Confidence 3568899998864 2232 222222 457788888888777655566777788888888888775 44
Q ss_pred ChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCc
Q 011044 120 PPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNL 199 (495)
Q Consensus 120 p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l 199 (495)
|...+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+
T Consensus 68 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l 147 (208)
T 2o6s_A 68 PNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL 147 (208)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred ChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccC
Confidence 55444447888888888888876555567788888888888888876666667778888888888888876656567788
Q ss_pred ccccEEEecCCcCCCcCchhhhcCCCCceeeCCCCcCCCCCCcccccccc
Q 011044 200 AELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSS 249 (495)
Q Consensus 200 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~ 249 (495)
++|+.|++++|.+.+ .+++|+.|+++.|.++|.+|..++.++.
T Consensus 148 ~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 148 TSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp TTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred CCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 888888888886653 3567888888888888888877766544
No 94
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.86 E-value=3.3e-21 Score=188.05 Aligned_cols=246 Identities=20% Similarity=0.241 Sum_probs=171.5
Q ss_pred CCCccceeeeCCCCCCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCC
Q 011044 41 SFCYWTGVTCDVRSHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELP 120 (495)
Q Consensus 41 ~~c~w~gv~c~~~~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p 120 (495)
+.|.|+.|.|. +++++ .+|..+ .+++++|+|++|+|+...+.+|.++++|++|+|++|.+.+.+|
T Consensus 7 C~C~~~~v~C~------------~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~ 71 (350)
T 4ay9_X 7 CHCSNRVFLCQ------------ESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIE 71 (350)
T ss_dssp SEEETTEEEEE------------STTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEEC
T ss_pred cEeeCCEEEec------------CCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccC
Confidence 34666666664 45555 455545 3689999999999986555678999999999999999888888
Q ss_pred hhHhhcCCCCCE-EEcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCC-CCCCCCChhhhC
Q 011044 121 PNFCNQMSNLES-LFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQN-KLQGEIPEELGN 198 (495)
Q Consensus 121 ~~~~~~l~~L~~-L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~l~~ 198 (495)
...+..++++++ +.+..|+++...|..|..+++|++|++++|.+....+..+....++..|++.++ .+....+..|..
T Consensus 72 ~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~ 151 (350)
T 4ay9_X 72 ADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG 151 (350)
T ss_dssp TTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTT
T ss_pred hhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhh
Confidence 877766888775 556678888777888899999999999999888665555666677788888654 455333445555
Q ss_pred cc-cccEEEecCCcCCCcCchhhhcCCCCceeeCCC-CcCCCCCCcccccccccceeeccCcccccccchhhhhCCcccc
Q 011044 199 LA-ELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSL-NNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQ 276 (495)
Q Consensus 199 l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 276 (495)
+. .++.|++++|.++ .++.......+|+++++++ |.++...+..|+.+++|+.|++++|+++ .+|...+..+++|+
T Consensus 152 ~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~~~~~L~~L~ 229 (350)
T 4ay9_X 152 LSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLR 229 (350)
T ss_dssp SBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSSSCTTCCEEE
T ss_pred cchhhhhhcccccccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChhhhccchHhh
Confidence 54 5788888888887 4555555667788888875 5555555556778888888888888887 56654333344444
Q ss_pred ccccccceeeecccccccCCCCCCeeecccc
Q 011044 277 TLSLYVNDFSGAIPKEIGNLTKLTDLYLDQN 307 (495)
Q Consensus 277 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 307 (495)
.+++. .+. .+| .+..+++|+.+++.++
T Consensus 230 ~l~~~--~l~-~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 230 ARSTY--NLK-KLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp CTTCT--TCC-CCC-CTTTCCSCCEEECSCH
T ss_pred hccCC--CcC-cCC-CchhCcChhhCcCCCC
Confidence 33332 222 344 3566777777777654
No 95
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=7.2e-21 Score=182.15 Aligned_cols=205 Identities=22% Similarity=0.360 Sum_probs=124.4
Q ss_pred cCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcccccCC
Q 011044 62 ISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFH 141 (495)
Q Consensus 62 L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~ 141 (495)
+..+.+++.+ .+..+++|++|++++|.+.. ++ .+..+++|++|++++|.+.+ ++. + ..+++|++|++++|.++
T Consensus 26 l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~-~~~-~-~~l~~L~~L~L~~n~l~ 98 (308)
T 1h6u_A 26 AGKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITD-LAP-L-KNLTKITELELSGNPLK 98 (308)
T ss_dssp TTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-G-TTCCSCCEEECCSCCCS
T ss_pred hCCCCcCcee--cHHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCC-Chh-H-ccCCCCCEEEccCCcCC
Confidence 3444444432 24467788888888887763 44 57777788888888777753 333 3 33777777777777776
Q ss_pred ccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCcCchhhh
Q 011044 142 GKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIF 221 (495)
Q Consensus 142 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~ 221 (495)
+ + ..+..+++|++|++++|.+++. + .+..+++|++|++++|.+++..+ +..+++|+.|++++|.+++. +. +.
T Consensus 99 ~-~-~~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~ 170 (308)
T 1h6u_A 99 N-V-SAIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-TP-LA 170 (308)
T ss_dssp C-C-GGGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GT
T ss_pred C-c-hhhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC-hh-hc
Confidence 4 2 3566777777777777777642 2 26667777777777777664322 66666677777766666632 22 56
Q ss_pred cCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceee
Q 011044 222 SLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFS 286 (495)
Q Consensus 222 ~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 286 (495)
.+++|+.|++++|.+++..+ +..+++|+.|++++|.+++..+ +. .+++|+.|++++|.++
T Consensus 171 ~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~-~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 171 NLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LA-NTSNLFIVTLTNQTIT 230 (308)
T ss_dssp TCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GT-TCTTCCEEEEEEEEEE
T ss_pred CCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--cc-CCCCCCEEEccCCeee
Confidence 66666666666666654432 4555566666666665552221 22 4455555555555554
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.85 E-value=3.2e-21 Score=198.16 Aligned_cols=204 Identities=25% Similarity=0.351 Sum_probs=157.2
Q ss_pred CCCCCCCCC-----cccee-eeCCCCCCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEE
Q 011044 35 NWNTSSSFC-----YWTGV-TCDVRSHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSI 108 (495)
Q Consensus 35 ~w~~~~~~c-----~w~gv-~c~~~~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 108 (495)
+|.....+| .|.++ .|.. .+++.|+|++|++++ +|..+ +++|++|+|++|.++ .+| ..+++|++|
T Consensus 35 ~W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L 105 (571)
T 3cvr_A 35 KWEKQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYL 105 (571)
T ss_dssp HHHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEE
T ss_pred HHhccCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEE
Confidence 676666777 68888 6764 589999999999987 66655 488999999999998 667 457899999
Q ss_pred EccCCcccccCChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCC
Q 011044 109 YFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKL 188 (495)
Q Consensus 109 ~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 188 (495)
++++|.+++ +|. +. .+|++|++++|.+++ +|. .+++|++|++++|.+++ +|. .+++|++|++++|.+
T Consensus 106 ~Ls~N~l~~-ip~-l~---~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L 172 (571)
T 3cvr_A 106 DACDNRLST-LPE-LP---ASLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQL 172 (571)
T ss_dssp ECCSSCCSC-CCC-CC---TTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCC
T ss_pred EccCCCCCC-cch-hh---cCCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCC
Confidence 999999876 776 43 389999999999886 565 67889999999998885 555 567899999999988
Q ss_pred CCCCChhhhCcccccEEEecCCcCCCcCchhhhcCCCC-------ceeeCCCCcCCCCCCcccccccccceeeccCcccc
Q 011044 189 QGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSL-------LNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLS 261 (495)
Q Consensus 189 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L-------~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~ 261 (495)
++ +|. +. ++|+.|++++|.++ .+|. +.. +| +.|++++|.++. +|..+..+++|+.|++++|.++
T Consensus 173 ~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 173 TF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp SC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCC
T ss_pred CC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCC
Confidence 86 665 55 78888999888887 5555 443 56 788888887774 5555666778888888888777
Q ss_pred cccchhhh
Q 011044 262 GELPANIG 269 (495)
Q Consensus 262 ~~~~~~~~ 269 (495)
+.+|..+.
T Consensus 244 ~~~p~~l~ 251 (571)
T 3cvr_A 244 SRIRESLS 251 (571)
T ss_dssp HHHHHHHH
T ss_pred CcCHHHHH
Confidence 66665544
No 97
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.85 E-value=4.6e-24 Score=223.65 Aligned_cols=328 Identities=15% Similarity=0.104 Sum_probs=198.1
Q ss_pred CCCeEEEEcCCCCCccc---C------------chhccCCCCCCEEeCcCCcCCccCCcccc-CCCCCcEEEccCC-ccc
Q 011044 54 SHRVAALNISGLNLTGT---I------------PSELANLSSLQALDLSFNWFYGSIPSSIF-NMSSLLSIYFNNN-TLF 116 (495)
Q Consensus 54 ~~~l~~L~L~~~~l~~~---~------------~~~l~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~l~~n-~~~ 116 (495)
.+++++|+++++..... . +.....+++|++|+|++|.+++..+..+. .+++|++|++++| .+.
T Consensus 65 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~ 144 (594)
T 2p1m_B 65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFS 144 (594)
T ss_dssp CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEE
T ss_pred CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCC
Confidence 47899999998763221 1 12235689999999999999887776665 6899999999999 454
Q ss_pred ccCChhHhhcCCCCCEEEcccccCCccCCccc----CCCCCCCEEEcccCc--Cccc-cCccccCCCCCCEEEccCCCCC
Q 011044 117 GELPPNFCNQMSNLESLFLKYNMFHGKIPSTL----SSCKQLRELSLSSNY--FSGT-IPKEIGNLTKLTRLNLRQNKLQ 189 (495)
Q Consensus 117 ~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l----~~l~~L~~L~l~~n~--l~~~-~~~~l~~l~~L~~L~L~~n~l~ 189 (495)
+.....+...+++|++|++++|.+++..+..+ ..+++|++|++++|. +... ++..+..+++|++|++++|...
T Consensus 145 ~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~ 224 (594)
T 2p1m_B 145 TDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPL 224 (594)
T ss_dssp HHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCH
T ss_pred HHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcH
Confidence 33334555459999999999999776544333 477899999999986 3211 2222355799999999998322
Q ss_pred CCCChhhhCcccccEEEecCCc--------------------------CC----CcCchhhhcCCCCceeeCCCCcCCCC
Q 011044 190 GEIPEELGNLAELEMLWLQNNS--------------------------LT----GTIPSSIFSLSSLLNLDLSLNNFTGI 239 (495)
Q Consensus 190 ~~~~~~l~~l~~L~~L~l~~n~--------------------------l~----~~~~~~l~~l~~L~~L~Ls~n~l~~~ 239 (495)
+.++..+..+++|+.|++..+. +. ..++..+..+++|++|++++|.+++.
T Consensus 225 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~ 304 (594)
T 2p1m_B 225 EKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSY 304 (594)
T ss_dssp HHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHH
T ss_pred HHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHH
Confidence 2244455555566666543321 00 11222333456677777766664432
Q ss_pred CC-cccccccccceeeccCcccccccchhhhhC----------------------------------Cccccccccccce
Q 011044 240 IP-SSIGNLSSLQKLYLSDNQLSGELPANIGNN----------------------------------LPSLQTLSLYVND 284 (495)
Q Consensus 240 ~~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~----------------------------------l~~L~~L~L~~n~ 284 (495)
.. ..+..+++|+.|++++| +.+.....+... +++|+.|.+..+.
T Consensus 305 ~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~ 383 (594)
T 2p1m_B 305 DLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQ 383 (594)
T ss_dssp HHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESC
T ss_pred HHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCC
Confidence 11 12335555666655555 221222222223 4444444444444
Q ss_pred eeeccccccc-CCCCCCeeecc--c----cccccc-----CCccccCCCcCCEEeCcCCcccccCCcCccC-CCCCcEEE
Q 011044 285 FSGAIPKEIG-NLTKLTDLYLD--Q----NKLQGK-----IPHEIGNLRKLEWLMLSHNKLVGVVPAPIFN-LSTLISLQ 351 (495)
Q Consensus 285 l~~~~~~~l~-~l~~L~~L~L~--~----n~i~~~-----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~ 351 (495)
+++.....+. .+++|+.|+++ + +.+++. ++..+..+++|+.|++++ .+.+..+..+.. +++|+.|+
T Consensus 384 l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~ 462 (594)
T 2p1m_B 384 MTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLS 462 (594)
T ss_dssp CCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEE
T ss_pred cCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEee
Confidence 4433333332 35677777776 2 334311 111245667777777766 555444334443 77888999
Q ss_pred ccCCcCceecCCCCCCCCCChhhhhhhhcCCC
Q 011044 352 LHNNSLSGSLPSSADVPLPNLEELFLWEYGRE 383 (495)
Q Consensus 352 l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~ 383 (495)
+++|.+++..+......+++|+.|++.+|..+
T Consensus 463 L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~ 494 (594)
T 2p1m_B 463 VAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFG 494 (594)
T ss_dssp EESCCSSHHHHHHHHHHCTTCCEEEEESCSCC
T ss_pred ccCCCCcHHHHHHHHhcCCCcCEEECcCCCCc
Confidence 98888765433332234788999999888764
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=8.3e-20 Score=164.44 Aligned_cols=162 Identities=26% Similarity=0.319 Sum_probs=88.8
Q ss_pred CCCCEEEcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEe
Q 011044 128 SNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWL 207 (495)
Q Consensus 128 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 207 (495)
++|++|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+.++++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 34555555555554333334455555555555555555433334455555555555555555444444555556666666
Q ss_pred cCCcCCCcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeee
Q 011044 208 QNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSG 287 (495)
Q Consensus 208 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 287 (495)
++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+ .+++|+.|+++.|.+++
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~--------~~~~l~~L~~~~n~~~g 179 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC--------TCPGIRYLSEWINKHSG 179 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC--------CTTTTHHHHHHHHHCTT
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec--------CCCCHHHHHHHHHhCCc
Confidence 6665554444445556666666666666655555445566666666666665542 34456666666666666
Q ss_pred cccccccCCC
Q 011044 288 AIPKEIGNLT 297 (495)
Q Consensus 288 ~~~~~l~~l~ 297 (495)
.+|..++.++
T Consensus 180 ~ip~~~~~l~ 189 (208)
T 2o6s_A 180 VVRNSAGSVA 189 (208)
T ss_dssp TBBCTTSSBC
T ss_pred eeeccCcccc
Confidence 6665555443
No 99
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.83 E-value=7.7e-20 Score=178.36 Aligned_cols=200 Identities=20% Similarity=0.152 Sum_probs=92.8
Q ss_pred CEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcccccCCccCC-cccCCCCCCCE-EEc
Q 011044 82 QALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIP-STLSSCKQLRE-LSL 159 (495)
Q Consensus 82 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~-L~l 159 (495)
++++.+++.++ .+|..+ .+++++|+|++|.+. .+|...+.++++|++|+|++|.+.+.++ ..|.+++++++ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 45556666665 455444 245666666666653 4444433346666666666665543333 34555555543 334
Q ss_pred ccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecC-CcCCCcCchhhhcCC-CCceeeCCCCcCC
Q 011044 160 SSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQN-NSLTGTIPSSIFSLS-SLLNLDLSLNNFT 237 (495)
Q Consensus 160 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~l~~l~-~L~~L~Ls~n~l~ 237 (495)
.+|+++...|..|..+++|++|++++|.+....+..+....++..|++.+ +.+....+..+..+. .++.|++++|.++
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 44555544455555566666666666655544333344444455555543 233322222333332 3444455554444
Q ss_pred CCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceee
Q 011044 238 GIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFS 286 (495)
Q Consensus 238 ~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 286 (495)
.+.+..+ ...+|+++++.+++..+.+|...+..+++|+.|++++|.++
T Consensus 168 ~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 168 EIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp EECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred CCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC
Confidence 3222222 22344444443321112333333333444444444444443
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=3e-19 Score=183.49 Aligned_cols=186 Identities=26% Similarity=0.347 Sum_probs=127.1
Q ss_pred CCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCCEEEc
Q 011044 80 SLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSL 159 (495)
Q Consensus 80 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 159 (495)
+|++|++++|.+++ +|..+. ++|++|++++|.+. .+| ..+++|++|++++|.+++ +|. +.+ +|++|++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP----ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 88899999988875 666553 77888888888885 676 237888888888888885 666 554 7888888
Q ss_pred ccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCcCchhhhcCCCCceeeCCCCcCCCC
Q 011044 160 SSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGI 239 (495)
Q Consensus 160 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 239 (495)
++|.+++ +|. .+++|++|++++|.+++ +|. .+++|+.|++++|.+++ +|. +. ++|+.|++++|.++ .
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~ 194 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-S 194 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-S
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-c
Confidence 8888875 555 56788888888888775 554 56778888888887775 555 44 77777777777777 3
Q ss_pred CCccccccccc-------ceeeccCcccccccchhhhhCCccccccccccceeeecccccccC
Q 011044 240 IPSSIGNLSSL-------QKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGN 295 (495)
Q Consensus 240 ~~~~l~~~~~L-------~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 295 (495)
+|. +.. +| +.|++++|.++ .+|..++ .+++|+.|++++|.+++..|..+..
T Consensus 195 lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~-~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 195 LPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENIL-SLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp CCC-CC----------CCEEEECCSSCCC-CCCGGGG-GSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred hhh-HHH--hhhcccccceEEecCCCcce-ecCHHHh-cCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 333 433 45 66666666665 4555555 3556666666666655555544433
No 101
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.81 E-value=6e-19 Score=161.17 Aligned_cols=162 Identities=25% Similarity=0.331 Sum_probs=113.4
Q ss_pred CCCCCCCCCccceeeeCCCCCCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCc
Q 011044 35 NWNTSSSFCYWTGVTCDVRSHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNT 114 (495)
Q Consensus 35 ~w~~~~~~c~w~gv~c~~~~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 114 (495)
-|....+.|.|+++.|.. +.++ .+|..+ .++|++|+|++|.+++..|..|.++++|++|++++|.
T Consensus 11 ~~~~~~~~Cs~~~v~c~~------------~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~ 75 (229)
T 3e6j_A 11 AACPSQCSCSGTTVDCRS------------KRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ 75 (229)
T ss_dssp CCCCTTCEEETTEEECTT------------SCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCCCCCEEeCCEeEccC------------CCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC
Confidence 566678899999999864 2333 344433 3788899999988887778888888888888888888
Q ss_pred ccccCChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCCh
Q 011044 115 LFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPE 194 (495)
Q Consensus 115 ~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 194 (495)
+ +.+|...+..+++|++|++++|.+++..+..|..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..+.
T Consensus 76 l-~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~ 153 (229)
T 3e6j_A 76 L-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHG 153 (229)
T ss_dssp C-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTT
T ss_pred C-CCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHH
Confidence 7 4555555445777777777777777555555667777777777777776 5566666677777777777766655445
Q ss_pred hhhCcccccEEEecCCcCC
Q 011044 195 ELGNLAELEMLWLQNNSLT 213 (495)
Q Consensus 195 ~l~~l~~L~~L~l~~n~l~ 213 (495)
.+..+++|+.|++++|.+.
T Consensus 154 ~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 154 AFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp TTTTCTTCCEEECTTSCBC
T ss_pred HHhCCCCCCEEEeeCCCcc
Confidence 5666666666666666655
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=1.2e-18 Score=165.24 Aligned_cols=171 Identities=27% Similarity=0.381 Sum_probs=91.7
Q ss_pred cCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCC
Q 011044 76 ANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLR 155 (495)
Q Consensus 76 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 155 (495)
..+++|++|++++|.+... + .+..+++|++|++++|.+.+.. . + ..+++|++|++++|.+++ + ..+..+++|+
T Consensus 43 ~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~-~-l-~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~ 115 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIK-P-L-ANLKNLGWLFLDENKVKD-L-SSLKDLKKLK 115 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCG-G-G-TTCTTCCEEECCSSCCCC-G-GGGTTCTTCC
T ss_pred hhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCc-c-c-ccCCCCCEEECCCCcCCC-C-hhhccCCCCC
Confidence 3455566666666655422 2 2555555555555555554322 2 2 225556666666655553 2 2355566666
Q ss_pred EEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCcCchhhhcCCCCceeeCCCCc
Q 011044 156 ELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNN 235 (495)
Q Consensus 156 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 235 (495)
+|++++|.+++. ..+..+++|++|++++|.+++. ..+..+++|+.|++++|.+++..+ +..+++|+.|++++|.
T Consensus 116 ~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 116 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 189 (291)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCc
Confidence 666666655532 3455566666666666665533 345556666666666665553322 5555566666666665
Q ss_pred CCCCCCcccccccccceeeccCcccc
Q 011044 236 FTGIIPSSIGNLSSLQKLYLSDNQLS 261 (495)
Q Consensus 236 l~~~~~~~l~~~~~L~~L~l~~n~l~ 261 (495)
+++. + .+..+++|+.|++++|.++
T Consensus 190 i~~l-~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 190 ISDL-R-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp CCBC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred CCCC-h-hhccCCCCCEEECcCCccc
Confidence 5543 2 2455555555555555554
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=1.5e-18 Score=164.47 Aligned_cols=171 Identities=22% Similarity=0.315 Sum_probs=148.3
Q ss_pred CCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEE
Q 011044 55 HRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLF 134 (495)
Q Consensus 55 ~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~ 134 (495)
++++.|++++|.++.. +.+..+++|++|++++|.+++..+ +.++++|++|++++|.+.+ ++. +. .+++|++|+
T Consensus 46 ~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~-~l~~L~~L~ 118 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LSS-LK-DLKKLKSLS 118 (291)
T ss_dssp HTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GGG-GT-TCTTCCEEE
T ss_pred CcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Chh-hc-cCCCCCEEE
Confidence 5799999999999865 358999999999999999986544 8999999999999999864 433 44 499999999
Q ss_pred cccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCC
Q 011044 135 LKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTG 214 (495)
Q Consensus 135 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 214 (495)
+++|.+++. ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++
T Consensus 119 L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 119 LEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 192 (291)
T ss_dssp CTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred CCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC
Confidence 999999853 5688999999999999999865 678999999999999999986544 8999999999999999985
Q ss_pred cCchhhhcCCCCceeeCCCCcCCCCC
Q 011044 215 TIPSSIFSLSSLLNLDLSLNNFTGII 240 (495)
Q Consensus 215 ~~~~~l~~l~~L~~L~Ls~n~l~~~~ 240 (495)
++ .+..+++|+.|++++|.+....
T Consensus 193 -l~-~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 193 -LR-ALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp -CG-GGTTCTTCSEEEEEEEEEECCC
T ss_pred -Ch-hhccCCCCCEEECcCCcccCCc
Confidence 44 4899999999999999987643
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.78 E-value=2.8e-18 Score=178.25 Aligned_cols=172 Identities=26% Similarity=0.383 Sum_probs=97.0
Q ss_pred ccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcccccCCccCCcccCCCCCC
Q 011044 75 LANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQL 154 (495)
Q Consensus 75 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 154 (495)
+..+++|+.|++++|.+.. ++ .+..+++|++|+|++|.+.+..| +. .+++|+.|+|++|.+.+ ++ .+..+++|
T Consensus 39 ~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~-~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L 111 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LT-NLKNLGWLFLDENKIKD-LS-SLKDLKKL 111 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GG-GCTTCCEEECCSSCCCC-CT-TSTTCTTC
T ss_pred hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hc-cCCCCCEEECcCCCCCC-Ch-hhccCCCC
Confidence 3445555555665555542 22 35555566666666665543322 22 26666666666666553 22 45566666
Q ss_pred CEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCcCchhhhcCCCCceeeCCCC
Q 011044 155 RELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLN 234 (495)
Q Consensus 155 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n 234 (495)
++|+|++|.+.+. ..+..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|
T Consensus 112 ~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 112 KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 185 (605)
T ss_dssp CEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred CEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCC
Confidence 6666666666532 3355666666666666666543 445666666666666666654433 556666666666666
Q ss_pred cCCCCCCcccccccccceeeccCcccc
Q 011044 235 NFTGIIPSSIGNLSSLQKLYLSDNQLS 261 (495)
Q Consensus 235 ~l~~~~~~~l~~~~~L~~L~l~~n~l~ 261 (495)
.+++. ..+..+++|+.|++++|.+.
T Consensus 186 ~i~~l--~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 186 HISDL--RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp CCCBC--GGGTTCTTCSEEECCSEEEE
T ss_pred CCCCC--hHHccCCCCCEEEccCCcCc
Confidence 66543 23556666666666666655
No 105
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.78 E-value=3.1e-20 Score=197.64 Aligned_cols=234 Identities=19% Similarity=0.226 Sum_probs=130.9
Q ss_pred CChHHHHHHHHHHhhCCCCCCccccCCCCCC-CCCCccceeeeCCCCCCeEEEEcCCCCCcccCchhccCCCCCCEE---
Q 011044 9 SITTDQQALLVLKAHVTDDPTNFLAKNWNTS-SSFCYWTGVTCDVRSHRVAALNISGLNLTGTIPSELANLSSLQAL--- 84 (495)
Q Consensus 9 ~~~~~~~~ll~~~~~~~~~~~~~l~~~w~~~-~~~c~w~gv~c~~~~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L--- 84 (495)
..+.++++|+++...+.+.....-. .|... ...+.|.+..+.. ++++.|+|.++.+... +..+.....|+.+
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~ 204 (727)
T 4b8c_D 129 LVDCTKQALMEMADTLTDSKTAKKQ-QPTGDSTPSGTATNSAVST--PLTPKIELFANGKDEA-NQALLQHKKLSQYSID 204 (727)
T ss_dssp ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred ccccchhhhhhhhhhcccccCcccC-CCcCCCCccccCCCceecC--CccceEEeeCCCCCcc-hhhHhhcCccCccccc
Confidence 3455779999998777332222222 56433 3567788887764 7899999999988763 3333333333332
Q ss_pred --eCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCCEEEcccC
Q 011044 85 --DLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSN 162 (495)
Q Consensus 85 --~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 162 (495)
++..|.+. ..+..+..+++|++|+|++|.+. .+|..++. +++|++|+|++|.++ .+|..|+++++|++|+|++|
T Consensus 205 ~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~-l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N 280 (727)
T 4b8c_D 205 EDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFK-YDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHN 280 (727)
T ss_dssp ------------------CCCCCCEEECTTSCCS-CCCGGGGG-CCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTS
T ss_pred Ccccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcC-CCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCC
Confidence 23334333 45677888999999999999985 78888875 999999999999998 78888999999999999999
Q ss_pred cCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCcCchhhhcCC-CCceeeCCCCcCCCCCC
Q 011044 163 YFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLS-SLLNLDLSLNNFTGIIP 241 (495)
Q Consensus 163 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~~ 241 (495)
.++ .+|..|+.+++|++|+|++|.++ .+|..|+++++|+.|+|++|.+++.+|..+..+. .+..+++++|.+++.+|
T Consensus 281 ~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 281 RLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp CCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred cCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence 998 77888999999999999999887 7788899999999999999999988887776543 22347788888887776
Q ss_pred cccccccccceeeccCc
Q 011044 242 SSIGNLSSLQKLYLSDN 258 (495)
Q Consensus 242 ~~l~~~~~L~~L~l~~n 258 (495)
.. |+.|+++.|
T Consensus 359 ~~------l~~l~l~~n 369 (727)
T 4b8c_D 359 HE------RRFIEINTD 369 (727)
T ss_dssp CC---------------
T ss_pred cc------cceeEeecc
Confidence 53 445555555
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=3.1e-18 Score=155.41 Aligned_cols=150 Identities=21% Similarity=0.234 Sum_probs=75.5
Q ss_pred EEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCC-ccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEccc
Q 011044 59 ALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIP-SSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKY 137 (495)
Q Consensus 59 ~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~ 137 (495)
.++++++.++. +|..+ .+.+++|+|++|.+++..+ ..|.++++|++|++++|.+.+..+..+.. +++|++|++++
T Consensus 15 ~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~-l~~L~~L~Ls~ 90 (220)
T 2v70_A 15 TVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG-ASGVNEILLTS 90 (220)
T ss_dssp EEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTT-CTTCCEEECCS
T ss_pred EeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCC-CCCCCEEECCC
Confidence 56666677663 44433 2345777777777765543 33555666666666665554332222222 55555555555
Q ss_pred ccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcC
Q 011044 138 NMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSL 212 (495)
Q Consensus 138 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 212 (495)
|.+++..+..|..+++|++|++++|.+++..|..|..+++|++|++++|.+++..|..|..+++|+.|++++|.+
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 555444444444445555555555544444444444444444444444444444444444444444444444443
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.76 E-value=7e-18 Score=153.02 Aligned_cols=133 Identities=25% Similarity=0.278 Sum_probs=70.9
Q ss_pred CCEEEcccccCCccCC-cccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEec
Q 011044 130 LESLFLKYNMFHGKIP-STLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQ 208 (495)
Q Consensus 130 L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 208 (495)
+++|++++|.+++..+ ..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|.++++|++|+++
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 113 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR 113 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECC
Confidence 3444444444443322 234445555555555555554444445555555555555555554444445555555555555
Q ss_pred CCcCCCcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCccccc
Q 011044 209 NNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSG 262 (495)
Q Consensus 209 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~ 262 (495)
+|.+++..|..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+..
T Consensus 114 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 114 SNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp TSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 555555445555555556666666665555555555556666666666665553
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.76 E-value=6e-18 Score=175.69 Aligned_cols=177 Identities=23% Similarity=0.316 Sum_probs=151.2
Q ss_pred CCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEE
Q 011044 55 HRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLF 134 (495)
Q Consensus 55 ~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~ 134 (495)
++|+.|++++|.+... +.+..+++|++|+|++|.+.+..+ +..+++|++|+|++|.+.+ +| .+.. +++|+.|+
T Consensus 43 ~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~-l~~L~~L~ 115 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKD-LKKLKSLS 115 (605)
T ss_dssp TTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTT-CTTCCEEE
T ss_pred CCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhcc-CCCCCEEE
Confidence 6799999999999754 368999999999999999986554 8999999999999999864 44 4444 99999999
Q ss_pred cccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCC
Q 011044 135 LKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTG 214 (495)
Q Consensus 135 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 214 (495)
|++|.+.+ + ..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|.+++
T Consensus 116 Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 116 LEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 189 (605)
T ss_dssp CTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred ecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC
Confidence 99999985 3 4688999999999999999865 678999999999999999997655 8999999999999999985
Q ss_pred cCchhhhcCCCCceeeCCCCcCCCCCCccccc
Q 011044 215 TIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGN 246 (495)
Q Consensus 215 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~ 246 (495)
. ..+..+++|+.|+|++|.+.+.....+..
T Consensus 190 l--~~l~~l~~L~~L~L~~N~l~~~p~~~~~~ 219 (605)
T 1m9s_A 190 L--RALAGLKNLDVLELFSQECLNKPINHQSN 219 (605)
T ss_dssp C--GGGTTCTTCSEEECCSEEEECCCCCCCSS
T ss_pred C--hHHccCCCCCEEEccCCcCcCCccccccc
Confidence 4 46899999999999999988654433333
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.76 E-value=7.1e-18 Score=153.00 Aligned_cols=150 Identities=24% Similarity=0.269 Sum_probs=91.6
Q ss_pred EEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEccccc
Q 011044 60 LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNM 139 (495)
Q Consensus 60 L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~ 139 (495)
+++++++++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+.+..|..+.. +++|++|++++|.
T Consensus 16 v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~-l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 16 VDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG-LRSLNSLVLYGNK 91 (220)
T ss_dssp EECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTT-CSSCCEEECCSSC
T ss_pred EEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhC-CcCCCEEECCCCc
Confidence 344455555 3444333 67888888888887666667777777777777777775544544444 6666666666666
Q ss_pred CCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCC
Q 011044 140 FHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLT 213 (495)
Q Consensus 140 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 213 (495)
++...+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|.+.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 66444444556666666666666666555555666666666666666665544445555555555555555543
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.76 E-value=7.9e-18 Score=152.66 Aligned_cols=134 Identities=25% Similarity=0.299 Sum_probs=84.4
Q ss_pred CCCCEEEcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEe
Q 011044 128 SNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWL 207 (495)
Q Consensus 128 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 207 (495)
++|+.|++++|.+++..+..|..+++|++|++++|.+++..|..|.++++|++|+|++|.++...+..|.++++|++|++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 34555666666555444445666666666666666666555666666666666666666666444444566666666666
Q ss_pred cCCcCCCcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccc
Q 011044 208 QNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLS 261 (495)
Q Consensus 208 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~ 261 (495)
++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 666666555666666666666666666666666555666666777777766654
No 111
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.75 E-value=7.1e-18 Score=165.11 Aligned_cols=177 Identities=25% Similarity=0.247 Sum_probs=129.1
Q ss_pred CEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCCEEEccc
Q 011044 82 QALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSS 161 (495)
Q Consensus 82 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 161 (495)
++++++++.++ .+|..+. +.+++|++++|.+.+..+..+...+++|++|++++|.+++..+..|.++++|++|++++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 57888888887 5665543 45788888888885444333332488888888888888876667788888888888888
Q ss_pred CcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCcCchhh---hcCCCCceeeCCCCcCCC
Q 011044 162 NYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSI---FSLSSLLNLDLSLNNFTG 238 (495)
Q Consensus 162 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l---~~l~~L~~L~Ls~n~l~~ 238 (495)
|.+++..+..|..+++|++|+|++|.+.+..+..|.++++|+.|+|++|.++...+..+ ..+++|+.|+|++|.+++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 88886666677888888888888888887667778888888888888888875433333 457788888888888776
Q ss_pred CCCcccccccc--cceeeccCcccc
Q 011044 239 IIPSSIGNLSS--LQKLYLSDNQLS 261 (495)
Q Consensus 239 ~~~~~l~~~~~--L~~L~l~~n~l~ 261 (495)
..+..+..++. ++.|++++|.+.
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCHHHhhhccHhhcceEEecCCCcc
Confidence 65555666655 367777777665
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.75 E-value=8.6e-18 Score=164.52 Aligned_cols=175 Identities=25% Similarity=0.207 Sum_probs=143.1
Q ss_pred EEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCcccc-CCCCCcEEEccCCcccccCChhHhhcCCCCCEEEccc
Q 011044 59 ALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIF-NMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKY 137 (495)
Q Consensus 59 ~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~ 137 (495)
.+++++++++. +|..+. +.+++|+|++|.+++..+..+. ++++|++|++++|.+.+..+..+. .+++|++|+|++
T Consensus 22 ~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~-~l~~L~~L~Ls~ 97 (361)
T 2xot_A 22 ILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFV-PVPNLRYLDLSS 97 (361)
T ss_dssp EEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCS
T ss_pred EEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhcc-CCCCCCEEECCC
Confidence 56777777774 555443 4689999999999977777777 899999999999999654444454 499999999999
Q ss_pred ccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhh---hCcccccEEEecCCcCCC
Q 011044 138 NMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEEL---GNLAELEMLWLQNNSLTG 214 (495)
Q Consensus 138 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~l~~n~l~~ 214 (495)
|.++...+..|..+++|++|++++|.+.+..+..|..+++|++|+|++|.++...+..+ ..+++|+.|+|++|.++.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 99987777788999999999999999998888889999999999999999985444444 578999999999999996
Q ss_pred cCchhhhcCCC--CceeeCCCCcCC
Q 011044 215 TIPSSIFSLSS--LLNLDLSLNNFT 237 (495)
Q Consensus 215 ~~~~~l~~l~~--L~~L~Ls~n~l~ 237 (495)
..+..+..++. ++.|++++|.+.
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCHHHhhhccHhhcceEEecCCCcc
Confidence 66677888886 488999999876
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=7.3e-18 Score=150.25 Aligned_cols=152 Identities=22% Similarity=0.207 Sum_probs=70.2
Q ss_pred cCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCC
Q 011044 76 ANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLR 155 (495)
Q Consensus 76 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 155 (495)
..+++|++|++++|.++ .+| .+..+++|++|++++|.+. . +..+.. +++|++|++++|.+++..+..++.+++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~-~~~l~~-l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-N-YNPISG-LSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-C-CGGGTT-CTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-c-chhhhc-CCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 34455555555555554 333 3444555555555555331 1 122222 45555555555555444444455555555
Q ss_pred EEEcccCcCccccCccccCCCCCCEEEccCCC-CCCCCChhhhCcccccEEEecCCcCCCcCchhhhcCCCCceeeCCCC
Q 011044 156 ELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNK-LQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLN 234 (495)
Q Consensus 156 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n 234 (495)
+|++++|.+++..+..+..+++|++|++++|. +. .++ .+..+++|+.|++++|.+++ ++ .+..+++|++|++++|
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCc
Confidence 55555555554444445555555555555554 32 222 34444445555555444442 11 3444444444444444
Q ss_pred cC
Q 011044 235 NF 236 (495)
Q Consensus 235 ~l 236 (495)
.+
T Consensus 192 ~i 193 (197)
T 4ezg_A 192 TI 193 (197)
T ss_dssp --
T ss_pred cc
Confidence 43
No 114
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.74 E-value=3.2e-17 Score=149.67 Aligned_cols=133 Identities=31% Similarity=0.372 Sum_probs=79.4
Q ss_pred CCCCEEEcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEe
Q 011044 128 SNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWL 207 (495)
Q Consensus 128 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 207 (495)
++|++|++++|.+++..+..|..+++|++|++++|.+....+..|..+++|++|++++|.+++..+..|..+++|++|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 45555555555555544555555666666666666655433344555666666666666665444444556666666666
Q ss_pred cCCcCCCcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccc
Q 011044 208 QNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLS 261 (495)
Q Consensus 208 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~ 261 (495)
++|.++ .+|..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 120 s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 120 CCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred cCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 666665 45555666666666666666666555555666666666666666655
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=1.8e-17 Score=147.71 Aligned_cols=153 Identities=19% Similarity=0.265 Sum_probs=104.9
Q ss_pred cCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCC
Q 011044 100 FNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLT 179 (495)
Q Consensus 100 ~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 179 (495)
..+++|++|++++|.+. .+| .+.. +++|++|++++|.++ .+..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~-l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEY-AHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGG-CTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhc-CCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 55677778888887774 555 3433 777888888777554 234677777777777777777766667777777777
Q ss_pred EEEccCCCCCCCCChhhhCcccccEEEecCCc-CCCcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCc
Q 011044 180 RLNLRQNKLQGEIPEELGNLAELEMLWLQNNS-LTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDN 258 (495)
Q Consensus 180 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n 258 (495)
+|++++|.+++..+..++.+++|++|++++|. ++ .++ .+..+++|++|++++|.+++.. .+..+++|+.|++++|
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCc
Confidence 77777777776666777777777777777776 44 344 5677777777777777776532 4666677777777777
Q ss_pred ccc
Q 011044 259 QLS 261 (495)
Q Consensus 259 ~l~ 261 (495)
++.
T Consensus 192 ~i~ 194 (197)
T 4ezg_A 192 TIG 194 (197)
T ss_dssp ---
T ss_pred ccC
Confidence 654
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.71 E-value=1.6e-17 Score=155.01 Aligned_cols=166 Identities=23% Similarity=0.316 Sum_probs=85.7
Q ss_pred CeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEc
Q 011044 56 RVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFL 135 (495)
Q Consensus 56 ~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l 135 (495)
+++.++++++.+++.. .+..+++|++|++++|.++ .++ .+..+++|++|++++|.+.+. +. + ..+++|++|++
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~-~~-l-~~l~~L~~L~L 92 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDL-SP-L-KDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-G-TTCSSCCEEEC
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCC-hh-h-ccCCCCCEEEC
Confidence 3445556666665432 4556666777777766665 333 455666666666666665432 22 2 23566666666
Q ss_pred ccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCc
Q 011044 136 KYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGT 215 (495)
Q Consensus 136 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 215 (495)
++|.+++ ++. +.. ++|++|++++|.+++. ..+..+++|++|++++|.+++. + .+..+++|+.|++++|.+++.
T Consensus 93 ~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 93 NRNRLKN-LNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp CSSCCSC-CTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC
T ss_pred CCCccCC-cCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch
Confidence 6665553 222 112 5555555555555532 2355555555555555555432 2 344555555555555555433
Q ss_pred CchhhhcCCCCceeeCCCCcCC
Q 011044 216 IPSSIFSLSSLLNLDLSLNNFT 237 (495)
Q Consensus 216 ~~~~l~~l~~L~~L~Ls~n~l~ 237 (495)
..+..+++|+.|++++|.+.
T Consensus 166 --~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 166 --GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp --TTSTTCCCCCEEEEEEEEEE
T ss_pred --HHhccCCCCCEEeCCCCccc
Confidence 33444444444444444443
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.71 E-value=2.8e-19 Score=184.58 Aligned_cols=178 Identities=21% Similarity=0.221 Sum_probs=84.6
Q ss_pred cCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCc-------------ccccCChhHhhcCCCCCEEE-cccccCC
Q 011044 76 ANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNT-------------LFGELPPNFCNQMSNLESLF-LKYNMFH 141 (495)
Q Consensus 76 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-------------~~~~~p~~~~~~l~~L~~L~-l~~n~l~ 141 (495)
..+++|+.|+|++|.+. .+|..++++++|+.|++++|. ..+..|..+.. +++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~-l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQY-FSTLKAVDPMRAAYLD 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHH-HHHHHHHCGGGHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHH-HHhcccCcchhhcccc
Confidence 45677777777777775 667777777777777775553 23333333333 55555555 3333221
Q ss_pred ccCCc------ccCC--CCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCC
Q 011044 142 GKIPS------TLSS--CKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLT 213 (495)
Q Consensus 142 ~~~~~------~l~~--l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 213 (495)
. ++. .+.. ...|++|++++|.+++ +|. ++.+++|++|++++|.++ .+|..++++++|+.|++++|.++
T Consensus 424 ~-L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~ 499 (567)
T 1dce_A 424 D-LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE 499 (567)
T ss_dssp H-HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred h-hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC
Confidence 0 000 0000 0124444444444442 333 444444444444444444 34444444444444444444444
Q ss_pred CcCchhhhcCCCCceeeCCCCcCCCCC-CcccccccccceeeccCcccc
Q 011044 214 GTIPSSIFSLSSLLNLDLSLNNFTGII-PSSIGNLSSLQKLYLSDNQLS 261 (495)
Q Consensus 214 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~~~~L~~L~l~~n~l~ 261 (495)
+ +| .+..+++|+.|+|++|.+++.. |..++.+++|+.|++++|.++
T Consensus 500 ~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 500 N-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546 (567)
T ss_dssp C-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred C-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCC
Confidence 3 23 4444444444444444444443 444444444444444444444
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=1.3e-17 Score=155.54 Aligned_cols=169 Identities=25% Similarity=0.292 Sum_probs=120.0
Q ss_pred CCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCCE
Q 011044 77 NLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRE 156 (495)
Q Consensus 77 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 156 (495)
++.++..++++.+.+++.. .+..+++|++|++++|.+. .++ .+.. +++|++|++++|.+++..+ +..+++|++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~-l~~L~~L~L~~N~i~~~~~--l~~l~~L~~ 89 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQF-FTNLKELHLSHNQISDLSP--LKDLTKLEE 89 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGG-CTTCCEEECCSSCCCCCGG--GTTCSSCCE
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhh-CCCCCEEECCCCccCCChh--hccCCCCCE
Confidence 3455666777778776443 4677888888888888774 455 4444 7888888888888875433 778888888
Q ss_pred EEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCcCchhhhcCCCCceeeCCCCcC
Q 011044 157 LSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNF 236 (495)
Q Consensus 157 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 236 (495)
|++++|.+++ ++. +.. ++|++|++++|.+++. ..+..+++|+.|++++|.+++. + .+..+++|++|++++|.+
T Consensus 90 L~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i 162 (263)
T 1xeu_A 90 LSVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEI 162 (263)
T ss_dssp EECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCC
T ss_pred EECCCCccCC-cCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcC
Confidence 8888888774 333 223 7788888888877743 3477778888888888877743 3 577777888888888877
Q ss_pred CCCCCcccccccccceeeccCcccc
Q 011044 237 TGIIPSSIGNLSSLQKLYLSDNQLS 261 (495)
Q Consensus 237 ~~~~~~~l~~~~~L~~L~l~~n~l~ 261 (495)
++. ..+..+++|+.|++++|.++
T Consensus 163 ~~~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 163 TNT--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp CBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred cch--HHhccCCCCCEEeCCCCccc
Confidence 765 45667777777777777766
No 119
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.69 E-value=2.2e-17 Score=175.76 Aligned_cols=187 Identities=24% Similarity=0.170 Sum_probs=76.4
Q ss_pred CCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCCEEE
Q 011044 79 SSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELS 158 (495)
Q Consensus 79 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 158 (495)
+.++.|+|.+|.+.. .+..+ |+.++|+.+.+. .+++..|.+. ..+..+..+++|+.|+
T Consensus 173 ~~~~~l~L~~n~~~~-~~~~~-----l~~l~Ls~~~i~---------------~~~~~~n~~~-~~~~~~~~l~~L~~L~ 230 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQAL-----LQHKKLSQYSID---------------EDDDIENRMV-MPKDSKYDDQLWHALD 230 (727)
T ss_dssp -----------------------------------------------------------------------CCCCCCEEE
T ss_pred CccceEEeeCCCCCc-chhhH-----hhcCccCccccc---------------Ccccccccee-cChhhhccCCCCcEEE
Confidence 557777777777653 23322 333333333321 1122223332 3344455555566666
Q ss_pred cccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCcCchhhhcCCCCceeeCCCCcCCC
Q 011044 159 LSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTG 238 (495)
Q Consensus 159 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 238 (495)
|++|.+. .+|..+..+++|++|+|++|.++ .+|..|+++++|++|+|++|.++ .+|..+..+++|++|+|++|.++
T Consensus 231 Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~- 306 (727)
T 4b8c_D 231 LSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT- 306 (727)
T ss_dssp CTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-
T ss_pred CCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-
Confidence 6665555 44544555566666666666555 55555566666666666666655 45555566666666666666554
Q ss_pred CCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeecccc
Q 011044 239 IIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPK 291 (495)
Q Consensus 239 ~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 291 (495)
.+|..|+.+++|+.|+|++|.+++.+|..+......+..+++.+|.+++.+|.
T Consensus 307 ~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 307 TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 34444566666666666666665555544431111222355566665555443
No 120
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.69 E-value=1.4e-17 Score=160.98 Aligned_cols=218 Identities=12% Similarity=0.074 Sum_probs=117.2
Q ss_pred CCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCc----CCCcCchhhhcCCCC
Q 011044 151 CKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNS----LTGTIPSSIFSLSSL 226 (495)
Q Consensus 151 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~----l~~~~~~~l~~l~~L 226 (495)
+++|+.|++.+ .++..-+..|.++++|+++++.+|.+....+..|.++.++..+....+. ........+.++..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 55555555555 4444444445555555555555555543444445554444444433311 111122234444444
Q ss_pred c-eeeCCCCcCCCCCCccc----ccccccceeeccCcccccccchhhhhCCccccccccccceeeecccccccCCCCCCe
Q 011044 227 L-NLDLSLNNFTGIIPSSI----GNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTD 301 (495)
Q Consensus 227 ~-~L~Ls~n~l~~~~~~~l----~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 301 (495)
+ .+.+.... .++..+ -...++..+.+.++-.. .....+...+++|+.+++++|.++......|.++.+|+.
T Consensus 179 ~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~ 254 (329)
T 3sb4_A 179 ETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLK 254 (329)
T ss_dssp EEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCE
T ss_pred ceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCE
Confidence 4 33332211 111100 12334455555443211 111222223667777777777776666666777777777
Q ss_pred eecccccccccCCccccCCCcCC-EEeCcCCcccccCCcCccCCCCCcEEEccCCcCceecCCCCCCCCCChhhhh
Q 011044 302 LYLDQNKLQGKIPHEIGNLRKLE-WLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELF 376 (495)
Q Consensus 302 L~L~~n~i~~~~~~~l~~l~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 376 (495)
+++.+| +......+|.+|++|+ .+++.+ .+....+..|.++++|+.+++++|.+. .++...+..+++|+.++
T Consensus 255 l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~-~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 255 IKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT-TLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC-EECTTTTCTTCCCCEEE
T ss_pred EECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC-ccchhhhcCCcchhhhc
Confidence 777776 5555556677777777 777776 566566667777777777777777776 56666666677766553
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.67 E-value=8.1e-19 Score=181.13 Aligned_cols=187 Identities=23% Similarity=0.254 Sum_probs=87.2
Q ss_pred CCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCC-------------CCCCCChhhhCcccccEEE-ecCCcCCC
Q 011044 149 SSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNK-------------LQGEIPEELGNLAELEMLW-LQNNSLTG 214 (495)
Q Consensus 149 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~-------------l~~~~~~~l~~l~~L~~L~-l~~n~l~~ 214 (495)
..+++|+.|++++|.++ .+|..++.+++|+.|++++|. ..+..|..++.+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 34455555555555554 455555555555555554432 3344555566666666665 4433221
Q ss_pred cCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeeccccccc
Q 011044 215 TIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIG 294 (495)
Q Consensus 215 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 294 (495)
.|..+.+++|.++...+ ..|+.|++++|.++ .+|. +. .+++|+.|++++|.++ .+|..++
T Consensus 424 ----------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~-~lp~-~~-~l~~L~~L~Ls~N~l~-~lp~~~~ 483 (567)
T 1dce_A 424 ----------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLT-VLCH-LE-QLLLVTHLDLSHNRLR-ALPPALA 483 (567)
T ss_dssp ----------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCS-SCCC-GG-GGTTCCEEECCSSCCC-CCCGGGG
T ss_pred ----------hhhhhhhhcccccccCc------cCceEEEecCCCCC-CCcC-cc-ccccCcEeecCccccc-ccchhhh
Confidence 11111122222211100 12444444444444 2333 22 4444555555555444 3444455
Q ss_pred CCCCCCeeecccccccccCCccccCCCcCCEEeCcCCcccccC-CcCccCCCCCcEEEccCCcCce
Q 011044 295 NLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVV-PAPIFNLSTLISLQLHNNSLSG 359 (495)
Q Consensus 295 ~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~ 359 (495)
.+++|+.|+|++|.+++ +| .++.+++|+.|++++|++++.. |..+..+++|+.|++++|++.+
T Consensus 484 ~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 484 ALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp GCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred cCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence 55555555555555543 33 4455555555555555555443 4455555555555555555543
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.66 E-value=3e-16 Score=135.93 Aligned_cols=133 Identities=21% Similarity=0.172 Sum_probs=95.6
Q ss_pred CCCeEEEEcCCCCCc-ccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCE
Q 011044 54 SHRVAALNISGLNLT-GTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLES 132 (495)
Q Consensus 54 ~~~l~~L~L~~~~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~ 132 (495)
++++++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+.+|..+.. +++|++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~ 99 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEK-LPNLTH 99 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHH-CTTCCE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhh-CCCCCE
Confidence 467888888888887 67777778888888888888888755 66777888888888888886656555544 778888
Q ss_pred EEcccccCCccC-CcccCCCCCCCEEEcccCcCccccC---ccccCCCCCCEEEccCCCCC
Q 011044 133 LFLKYNMFHGKI-PSTLSSCKQLRELSLSSNYFSGTIP---KEIGNLTKLTRLNLRQNKLQ 189 (495)
Q Consensus 133 L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~L~~n~l~ 189 (495)
|++++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 888888777432 2566777777777777777764433 35666667777777666654
No 123
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.66 E-value=6.9e-16 Score=136.68 Aligned_cols=131 Identities=24% Similarity=0.350 Sum_probs=69.0
Q ss_pred CEEEcccccCCccCCcccCCCCCCCEEEcccCcCccccCc-cccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecC
Q 011044 131 ESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPK-EIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQN 209 (495)
Q Consensus 131 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 209 (495)
++++++++.++ .+|..+. .+|++|++++|.+++..+. .+..+++|++|++++|.+++..|..|.++++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 34444444443 3333332 1455555555555433332 245555555555555555555455555555555555555
Q ss_pred CcCCCcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCccccccc
Q 011044 210 NSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGEL 264 (495)
Q Consensus 210 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~ 264 (495)
|.+++..+..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+.+..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 5555544455555566666666666665555555566666666666666655433
No 124
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.65 E-value=4.6e-16 Score=150.24 Aligned_cols=243 Identities=12% Similarity=0.100 Sum_probs=163.1
Q ss_pred CCCCCEEEcccccCC--ccCCcccCCCCCCCEEEcccCcCccccCccccC--------CCCCCEEEccCCCCCCCCChhh
Q 011044 127 MSNLESLFLKYNMFH--GKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGN--------LTKLTRLNLRQNKLQGEIPEEL 196 (495)
Q Consensus 127 l~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~--------l~~L~~L~L~~n~l~~~~~~~l 196 (495)
+++|+.|+|++|.+. ..... .++.++.+.+..|.+. ...|.+ +++|+++++.+ .++...+.+|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~I~---~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF 120 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANFVP---AYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAF 120 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTEEC---TTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTT
T ss_pred hccCeEEecCcceeEEecCccc---cccccccccccccccC---HHHhcccccccccccCCCcEEECCc-cccchhHHHh
Confidence 566777777776665 11111 2222344444444322 234555 99999999998 7776666789
Q ss_pred hCcccccEEEecCCcCCCcCchhhhcCCCCceeeCCCCc----CCCCCCcccccccccc-eeeccCcccccccchhhhh-
Q 011044 197 GNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNN----FTGIIPSSIGNLSSLQ-KLYLSDNQLSGELPANIGN- 270 (495)
Q Consensus 197 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~----l~~~~~~~l~~~~~L~-~L~l~~n~l~~~~~~~~~~- 270 (495)
.++++|+.+++.+|.+....+..|..+.++..+....+. ........+..+..|+ .+.+... +.++..++.
T Consensus 121 ~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~---~~l~~~~~~~ 197 (329)
T 3sb4_A 121 KGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAM---GKLEDEIMKA 197 (329)
T ss_dssp TTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTT---CCHHHHHHHT
T ss_pred hcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCC---CcHHHHHhhc
Confidence 999999999999998876667778887777777766532 2223334455666666 4444332 123333222
Q ss_pred --CCccccccccccceeeecccccccCCCCCCeeecccccccccCCccccCCCcCCEEeCcCCcccccCCcCccCCCCCc
Q 011044 271 --NLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLI 348 (495)
Q Consensus 271 --~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 348 (495)
...++..+.+.++-...........+++|+.+++++|.++.....+|.+|++|+.+++.+| +.......|.++++|+
T Consensus 198 ~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~ 276 (329)
T 3sb4_A 198 GLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLA 276 (329)
T ss_dssp TCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred ccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhcc
Confidence 2345555555544222111111224789999999999999777778999999999999998 7777888999999999
Q ss_pred -EEEccCCcCceecCCCCCCCCCChhhhhhhhcCC
Q 011044 349 -SLQLHNNSLSGSLPSSADVPLPNLEELFLWEYGR 382 (495)
Q Consensus 349 -~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~ 382 (495)
.+++.+ .+. .++...+..+++|+.+++..+..
T Consensus 277 ~~l~l~~-~l~-~I~~~aF~~c~~L~~l~l~~n~i 309 (329)
T 3sb4_A 277 GTLELPA-SVT-AIEFGAFMGCDNLRYVLATGDKI 309 (329)
T ss_dssp EEEEECT-TCC-EECTTTTTTCTTEEEEEECSSCC
T ss_pred EEEEEcc-cce-EEchhhhhCCccCCEEEeCCCcc
Confidence 999998 665 77888888999999998865543
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.65 E-value=1.1e-15 Score=135.32 Aligned_cols=129 Identities=24% Similarity=0.284 Sum_probs=80.0
Q ss_pred EEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCc-cccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEccc
Q 011044 59 ALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPS-SIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKY 137 (495)
Q Consensus 59 ~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~ 137 (495)
.+++++++++ .+|..+. ++|++|++++|.+++..+. .+.++++|++|++++|.+.+..|..+.. +++|++|++++
T Consensus 12 ~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~Ls~ 87 (192)
T 1w8a_A 12 TVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG-ASHIQELQLGE 87 (192)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT-CTTCCEEECCS
T ss_pred EEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCC-cccCCEEECCC
Confidence 4556666664 4554443 3777888888777755543 3666677777777777665554554444 66666666666
Q ss_pred ccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCC
Q 011044 138 NMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGE 191 (495)
Q Consensus 138 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 191 (495)
|.+++..+..|.++++|++|++++|.+++..|..+..+++|++|++++|.+.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 666655555566666666666666666665566666666666666666665543
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.64 E-value=7.1e-16 Score=133.53 Aligned_cols=107 Identities=26% Similarity=0.274 Sum_probs=43.0
Q ss_pred CCCEEEcccccCC-ccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEe
Q 011044 129 NLESLFLKYNMFH-GKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWL 207 (495)
Q Consensus 129 ~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 207 (495)
+|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+.+|..+..+++|++|++
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 3444444444433 23333334444444444444444322 33344444444444444444333333333444444444
Q ss_pred cCCcCCCcC-chhhhcCCCCceeeCCCCcCC
Q 011044 208 QNNSLTGTI-PSSIFSLSSLLNLDLSLNNFT 237 (495)
Q Consensus 208 ~~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~ 237 (495)
++|.+++.. +..+..+++|+.|++++|.++
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~ 133 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSSGGG
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCCcCc
Confidence 444443211 133333444444444444443
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.64 E-value=3.9e-16 Score=132.26 Aligned_cols=127 Identities=17% Similarity=0.124 Sum_probs=89.7
Q ss_pred CCeEEEEcCCCCCc-ccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEE
Q 011044 55 HRVAALNISGLNLT-GTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESL 133 (495)
Q Consensus 55 ~~l~~L~L~~~~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L 133 (495)
++++.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+.++++|++|++++|.+.+.+|..+.. +++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEK-CPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHH-CTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhh-CCCCCEE
Confidence 57888888888887 67777778888888888888888755 56777888888888888876655554444 7777777
Q ss_pred EcccccCCcc-CCcccCCCCCCCEEEcccCcCccccC---ccccCCCCCCEEEcc
Q 011044 134 FLKYNMFHGK-IPSTLSSCKQLRELSLSSNYFSGTIP---KEIGNLTKLTRLNLR 184 (495)
Q Consensus 134 ~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~L~ 184 (495)
++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|++|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 7777777642 23566667777777777776664433 345666666666654
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.62 E-value=1.1e-15 Score=129.62 Aligned_cols=109 Identities=23% Similarity=0.279 Sum_probs=49.6
Q ss_pred CCCCEEEcccccCC-ccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEE
Q 011044 128 SNLESLFLKYNMFH-GKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLW 206 (495)
Q Consensus 128 ~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 206 (495)
++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 33444444444444 33444444445555555555544433 3344444555555555544443444444444444444
Q ss_pred ecCCcCCCc-CchhhhcCCCCceeeCCCCcCCC
Q 011044 207 LQNNSLTGT-IPSSIFSLSSLLNLDLSLNNFTG 238 (495)
Q Consensus 207 l~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~ 238 (495)
+++|.+++. .+..+..+++|++|++++|.+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~ 127 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN 127 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGG
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccc
Confidence 444444431 12334444444444444444443
No 129
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.58 E-value=1e-13 Score=136.90 Aligned_cols=247 Identities=11% Similarity=0.108 Sum_probs=122.5
Q ss_pred CCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCCEE
Q 011044 78 LSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLREL 157 (495)
Q Consensus 78 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 157 (495)
+..++.+.+.. .++..-..+|.++ +|+.+.+..+ + ..++...+..+ +|+.+.+.. .+......+|.+|++|+.+
T Consensus 112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i-~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-L-KSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-C-CEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-c-cEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence 45566666643 3443444555554 5777776655 2 34444444433 566666654 3443444566666666666
Q ss_pred EcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCcCchhhhcCCCCceeeCCCCcCC
Q 011044 158 SLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFT 237 (495)
Q Consensus 158 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 237 (495)
++.+|.++......|. +.+|+.+.+..+ +......+|.++++|+.+.+..+ ++.....+|.+ .+|+.+.+. +.+.
T Consensus 186 ~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~ 260 (401)
T 4fdw_A 186 DLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVT 260 (401)
T ss_dssp ECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCC
T ss_pred ecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCcc
Confidence 6666666543333343 456666666533 44334445666666666666543 33222233333 455555553 2334
Q ss_pred CCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeecccccccCCCCCCeeecccccccccCCccc
Q 011044 238 GIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEI 317 (495)
Q Consensus 238 ~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l 317 (495)
.+....|..|++|+.+.+.++.+... .........|.++++|+.+++.+ .+......+|
T Consensus 261 ~I~~~aF~~c~~L~~l~l~~~~~~~~--------------------~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF 319 (401)
T 4fdw_A 261 NIASRAFYYCPELAEVTTYGSTFNDD--------------------PEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLL 319 (401)
T ss_dssp EECTTTTTTCTTCCEEEEESSCCCCC--------------------TTCEECTTTTTTCTTCCEECCCT-TCCEECTTTT
T ss_pred EEChhHhhCCCCCCEEEeCCccccCC--------------------cccEECHHHhhCCccCCeEEeCC-ceEEEhhhhh
Confidence 34444555555555555554433200 00012233444555555555552 2333334445
Q ss_pred cCCCcCCEEeCcCCcccccCCcCccCCCCCcEEEccCCcCc
Q 011044 318 GNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLS 358 (495)
Q Consensus 318 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 358 (495)
.+|++|+.+.+..+ +.......|.++ +|+.+++.+|.+.
T Consensus 320 ~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 320 GGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp TTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred cCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence 55555555555332 333444455555 5555555555443
No 130
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.57 E-value=1.1e-13 Score=136.56 Aligned_cols=262 Identities=13% Similarity=0.144 Sum_probs=175.0
Q ss_pred CeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEc
Q 011044 56 RVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFL 135 (495)
Q Consensus 56 ~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l 135 (495)
.++.+.+.+ .++.....+|.++ +|+.+.+..+ ++..-..+|.++ +|+.+.+.. .+ ..++...+..|++|+.+++
T Consensus 114 ~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l-~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 114 GYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TL-EQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TC-CEECSSTTTTCTTCCEEEC
T ss_pred CccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-Cc-cEehHHHhhCcccCCeeec
Confidence 344455544 3444445677775 7999999776 665666778775 799999986 44 4566666666999999999
Q ss_pred ccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCc
Q 011044 136 KYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGT 215 (495)
Q Consensus 136 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 215 (495)
.+|.++......|. +.+|+.+.+..+ +...-...|.++++|+.+.+..+ ++.....+|.+ .+|+.+.+. +.++..
T Consensus 188 ~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I 262 (401)
T 4fdw_A 188 SKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNI 262 (401)
T ss_dssp TTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEE
T ss_pred CCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEE
Confidence 99998865555665 689999999855 66566778999999999999875 44444566777 789999995 556655
Q ss_pred CchhhhcCCCCceeeCCCCcCC-----CCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeeccc
Q 011044 216 IPSSIFSLSSLLNLDLSLNNFT-----GIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIP 290 (495)
Q Consensus 216 ~~~~l~~l~~L~~L~Ls~n~l~-----~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 290 (495)
...+|.++++|+.+.+.++.+. .+....|..|++|+.+.+.+ .+.....
T Consensus 263 ~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--------------------------~i~~I~~ 316 (401)
T 4fdw_A 263 ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--------------------------SIRILGQ 316 (401)
T ss_dssp CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--------------------------TCCEECT
T ss_pred ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--------------------------ceEEEhh
Confidence 5778999999999999887654 23334455555555555542 2332333
Q ss_pred ccccCCCCCCeeecccccccccCCccccCCCcCCEEeCcCCcccccCCcCccCCC-CCcEEEccCCc
Q 011044 291 KEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLS-TLISLQLHNNS 356 (495)
Q Consensus 291 ~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~ 356 (495)
..|.++.+|+.+.+..+ ++.....+|.++ +|+.+++.+|.+.......|.+++ .+..|++..+.
T Consensus 317 ~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 317 GLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp TTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred hhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 44555555555555433 333344556666 666666666655544455555553 55666665544
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.57 E-value=2.8e-14 Score=126.27 Aligned_cols=108 Identities=30% Similarity=0.411 Sum_probs=57.8
Q ss_pred CCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCcCchhhhcCCCCceeeCC
Q 011044 153 QLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLS 232 (495)
Q Consensus 153 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 232 (495)
+|++|++++|.++ .+|..|..+++|++|++++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|+|+
T Consensus 32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 4555555555554 344445555555555555555554444445555555555555555554444455555555555555
Q ss_pred CCcCCCCCCcccccccccceeeccCcccc
Q 011044 233 LNNFTGIIPSSIGNLSSLQKLYLSDNQLS 261 (495)
Q Consensus 233 ~n~l~~~~~~~l~~~~~L~~L~l~~n~l~ 261 (495)
+|.++...+..+..+++|+.|++++|.+.
T Consensus 111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 111 GNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 55555444444555556666666666554
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.57 E-value=3.3e-14 Score=125.87 Aligned_cols=125 Identities=28% Similarity=0.349 Sum_probs=64.6
Q ss_pred EEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcccc
Q 011044 59 ALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYN 138 (495)
Q Consensus 59 ~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n 138 (495)
.+++++++++ .+|..+ .++|++|++++|.++ .+|..+.++++|++|++++|.+.+..+..+. .+++|++|++++|
T Consensus 14 ~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~-~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFS-NMTQLLTLILSYN 88 (193)
T ss_dssp EEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSS
T ss_pred EEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHcc-CCCCCCEEECCCC
Confidence 4555566665 344333 246677777777665 4555566666666666666655433222222 2555555555555
Q ss_pred cCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCC
Q 011044 139 MFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKL 188 (495)
Q Consensus 139 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 188 (495)
.+++..+..|..+++|++|++++|.++...+..|..+++|++|++++|.+
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 55544444455555555555555555433333344444455555544444
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.56 E-value=4e-14 Score=123.54 Aligned_cols=85 Identities=32% Similarity=0.303 Sum_probs=33.8
Q ss_pred CCCEEEcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEec
Q 011044 129 NLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQ 208 (495)
Q Consensus 129 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 208 (495)
+|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 108 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD 108 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence 34444444444433223333444444444444444443323333344444444444444443333333334444444444
Q ss_pred CCcCC
Q 011044 209 NNSLT 213 (495)
Q Consensus 209 ~n~l~ 213 (495)
+|.++
T Consensus 109 ~N~l~ 113 (177)
T 2o6r_A 109 TNQLK 113 (177)
T ss_dssp SSCCS
T ss_pred CCcce
Confidence 44433
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.55 E-value=5.5e-14 Score=122.67 Aligned_cols=133 Identities=25% Similarity=0.324 Sum_probs=107.5
Q ss_pred CCEEEcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecC
Q 011044 130 LESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQN 209 (495)
Q Consensus 130 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 209 (495)
.+.++++++.++ .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 466777777776 445433 36899999999999876666778899999999999999876666678899999999999
Q ss_pred CcCCCcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccc
Q 011044 210 NSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELP 265 (495)
Q Consensus 210 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~ 265 (495)
|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 99987666677889999999999999987776667888899999999998875443
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.51 E-value=4.3e-14 Score=123.21 Aligned_cols=132 Identities=17% Similarity=0.186 Sum_probs=78.6
Q ss_pred ccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCC
Q 011044 99 IFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKL 178 (495)
Q Consensus 99 l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 178 (495)
+.++.+|++|++++|.+. .+|. +....++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 444555666666666554 2332 333234677777777766643 456677777777777777765433444667777
Q ss_pred CEEEccCCCCCCCCCh--hhhCcccccEEEecCCcCCCcCchh----hhcCCCCceeeCCCCcC
Q 011044 179 TRLNLRQNKLQGEIPE--ELGNLAELEMLWLQNNSLTGTIPSS----IFSLSSLLNLDLSLNNF 236 (495)
Q Consensus 179 ~~L~L~~n~l~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~----l~~l~~L~~L~Ls~n~l 236 (495)
++|++++|.+. .+|. .+..+++|+.|++++|.++ .+|.. +..+++|+.|+++.|..
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 77777777764 3443 5666666666766666665 33432 55566666666655543
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.50 E-value=1.4e-16 Score=142.07 Aligned_cols=128 Identities=27% Similarity=0.320 Sum_probs=67.0
Q ss_pred CeEEEEcCCCCCcccCch------hccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCC
Q 011044 56 RVAALNISGLNLTGTIPS------ELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSN 129 (495)
Q Consensus 56 ~l~~L~L~~~~l~~~~~~------~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~ 129 (495)
+++.++++++.+++..|. .+..+++|++|++++|.+++ +| .+.++++|++|++++|.+. .+|..+.. +++
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~-~~~ 94 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV-ADT 94 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH-HHH
T ss_pred cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc-CCc
Confidence 344444444444444443 56666666666666666654 44 5556666666666666653 44443333 455
Q ss_pred CCEEEcccccCCccCCcccCCCCCCCEEEcccCcCccccC-ccccCCCCCCEEEccCCCCC
Q 011044 130 LESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIP-KEIGNLTKLTRLNLRQNKLQ 189 (495)
Q Consensus 130 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~ 189 (495)
|++|++++|.+++ +| .+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 95 L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 95 LEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp CSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred CCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 6666666555553 22 34455555555555555543211 23444555555555555443
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.50 E-value=2.4e-16 Score=140.50 Aligned_cols=133 Identities=25% Similarity=0.304 Sum_probs=70.7
Q ss_pred ccCCCCCCEEeCcCCcCCccCCc------cccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcccccCCccCCccc
Q 011044 75 LANLSSLQALDLSFNWFYGSIPS------SIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTL 148 (495)
Q Consensus 75 l~~l~~L~~L~L~~n~l~~~~~~------~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l 148 (495)
+...+.++.++++.+.+.+.+|. .+..+++|++|++++|.+.+ +| .+.. +++|++|++++|.++ .+|..+
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~-l~~L~~L~l~~n~l~-~l~~~~ 89 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSG-MENLRILSLGRNLIK-KIENLD 89 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHH-HTTCCEEEEEEEEEC-SCSSHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-cccc-CCCCCEEECCCCCcc-cccchh
Confidence 44556777777777777766664 55555666666666665543 44 3333 555555555555555 344444
Q ss_pred CCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCC-hhhhCcccccEEEecCCcCC
Q 011044 149 SSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIP-EELGNLAELEMLWLQNNSLT 213 (495)
Q Consensus 149 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~ 213 (495)
..+++|++|++++|.+++ +| .+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 90 ~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 90 AVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp HHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred hcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 444555555555555553 22 34445555555555555442111 23444555555555555444
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.49 E-value=8.3e-14 Score=121.40 Aligned_cols=127 Identities=20% Similarity=0.263 Sum_probs=80.9
Q ss_pred CCeEEEEcCCCCCcccCchhccCC-CCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEE
Q 011044 55 HRVAALNISGLNLTGTIPSELANL-SSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESL 133 (495)
Q Consensus 55 ~~l~~L~L~~~~l~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L 133 (495)
.+++.|++++|.++.. +. +..+ ++|++|++++|.+++. ..+..+++|++|++++|.+. .+|..++..+++|++|
T Consensus 19 ~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 19 VRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTEL 93 (176)
T ss_dssp TSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCEE
T ss_pred CCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcCCCCCEE
Confidence 5678888888887743 43 4444 4788888888887754 46777777777777777775 3454443347777777
Q ss_pred EcccccCCccCCc--ccCCCCCCCEEEcccCcCccccCcc----ccCCCCCCEEEccCCCC
Q 011044 134 FLKYNMFHGKIPS--TLSSCKQLRELSLSSNYFSGTIPKE----IGNLTKLTRLNLRQNKL 188 (495)
Q Consensus 134 ~l~~n~l~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~----l~~l~~L~~L~L~~n~l 188 (495)
++++|.++ .+|. .+..+++|++|++++|.+. .+|.. +..+++|++|++++|..
T Consensus 94 ~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 94 ILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp ECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred ECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 77777765 3443 5566666666666666665 33432 55555666666555543
No 139
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.38 E-value=1.7e-11 Score=121.25 Aligned_cols=291 Identities=14% Similarity=0.078 Sum_probs=155.5
Q ss_pred hhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEccccc-------------
Q 011044 73 SELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNM------------- 139 (495)
Q Consensus 73 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~------------- 139 (495)
.+|.++.+|+.+.|..+ ++..-..+|.+|.+|+.+++..+ + ..++...+..+.+|+.+.+..+-
T Consensus 65 ~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l-~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~ 141 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-V-KMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDF 141 (394)
T ss_dssp TTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-C-CEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCC
T ss_pred HHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-c-eEccchhhcccccchhhcccCceeeecceeeecccc
Confidence 34555555555555422 33333344555555555555433 1 23333333334555444433221
Q ss_pred --------CCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCc
Q 011044 140 --------FHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNS 211 (495)
Q Consensus 140 --------l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 211 (495)
.......+|.++++|+.+.+.++. .......|.++.+|+.+.+..+ +.......|.++..|+.+.+..+.
T Consensus 142 ~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~ 219 (394)
T 4fs7_A 142 KEITIPEGVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSL 219 (394)
T ss_dssp SEEECCTTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTC
T ss_pred cccccCccccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCc
Confidence 111122345556666666665432 2233344555666666666544 222233445555556655554432
Q ss_pred CCCcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeecccc
Q 011044 212 LTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPK 291 (495)
Q Consensus 212 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 291 (495)
.. +........+|+.+.+... +.......+..+..++.+.+..+.. .+....+..+..++.+......+ ...
T Consensus 220 ~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~--~i~~~~F~~~~~l~~~~~~~~~i---~~~ 291 (394)
T 4fs7_A 220 YY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKL--RIGGSLFYNCSGLKKVIYGSVIV---PEK 291 (394)
T ss_dssp CE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTC--EECSCTTTTCTTCCEEEECSSEE---CTT
T ss_pred eE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcc--eeeccccccccccceeccCceee---ccc
Confidence 21 2223333455666555432 2223334456666777777665533 22323333555666555544332 223
Q ss_pred cccCCCCCCeeecccccccccCCccccCCCcCCEEeCcCCcccccCCcCccCCCCCcEEEccCCcCceecCCCCCCCCCC
Q 011044 292 EIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPN 371 (495)
Q Consensus 292 ~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 371 (495)
.+..+.+|+.+.+..+ +......+|.+|.+|+.+++..+ +......+|.++.+|+.+.+..+ +. .+....+..+++
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~ 367 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCIN 367 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCTT
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCCC
Confidence 5667778888887654 44445567888888888888644 55556677888888888888766 54 667777777888
Q ss_pred hhhhhhhhc
Q 011044 372 LEELFLWEY 380 (495)
Q Consensus 372 L~~L~l~~~ 380 (495)
|+.+.++.+
T Consensus 368 L~~i~lp~~ 376 (394)
T 4fs7_A 368 LKKVELPKR 376 (394)
T ss_dssp CCEEEEEGG
T ss_pred CCEEEECCC
Confidence 887776543
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.38 E-value=1.4e-14 Score=141.65 Aligned_cols=160 Identities=20% Similarity=0.157 Sum_probs=86.2
Q ss_pred CCCCEEeCcCCcCCccCCcccc-----CCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcccccCCccCCccc-----
Q 011044 79 SSLQALDLSFNWFYGSIPSSIF-----NMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTL----- 148 (495)
Q Consensus 79 ~~L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l----- 148 (495)
+.|++|+|++|.++......+. ..++|++|++++|.+.+.....+...+++|++|+|++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 5566777777666543222222 125666777777666544334444445566777777766654322222
Q ss_pred CCCCCCCEEEcccCcCccc----cCccccCCCCCCEEEccCCCCCCC----CChhhhCcccccEEEecCCcCCCc----C
Q 011044 149 SSCKQLRELSLSSNYFSGT----IPKEIGNLTKLTRLNLRQNKLQGE----IPEELGNLAELEMLWLQNNSLTGT----I 216 (495)
Q Consensus 149 ~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~ 216 (495)
...++|++|++++|.++.. ++..+..+++|++|+|++|.+.+. ++..+...++|+.|++++|.++.. +
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 2345666666666666532 233345556666666666665532 133344555666666666666532 2
Q ss_pred chhhhcCCCCceeeCCCCcCCC
Q 011044 217 PSSIFSLSSLLNLDLSLNNFTG 238 (495)
Q Consensus 217 ~~~l~~l~~L~~L~Ls~n~l~~ 238 (495)
+..+...++|++|+|++|.+++
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHhCCCCCEEeccCCCCCH
Confidence 2333445566666666665553
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.35 E-value=6e-12 Score=108.79 Aligned_cols=36 Identities=36% Similarity=0.442 Sum_probs=13.2
Q ss_pred CCEEEcccCcCccccCccccCCCCCCEEEccCCCCC
Q 011044 154 LRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQ 189 (495)
Q Consensus 154 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 189 (495)
|++|++++|.+++..|..|..+++|++|++++|.++
T Consensus 32 l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 67 (170)
T 3g39_A 32 TQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT 67 (170)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC
T ss_pred CcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC
Confidence 333333333333333333333333333333333333
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.34 E-value=5.9e-12 Score=108.82 Aligned_cols=108 Identities=26% Similarity=0.298 Sum_probs=93.2
Q ss_pred CCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCcCchhhhcCCCCceeeCC
Q 011044 153 QLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLS 232 (495)
Q Consensus 153 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 232 (495)
..+++++++|.++ .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|.+++..+..|..+++|++|+|+
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 3578888888887 4666553 789999999999998888889999999999999999997767778899999999999
Q ss_pred CCcCCCCCCcccccccccceeeccCcccccc
Q 011044 233 LNNFTGIIPSSIGNLSSLQKLYLSDNQLSGE 263 (495)
Q Consensus 233 ~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ 263 (495)
+|.+++..+..+..+++|+.|++++|.+...
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 9999988777789999999999999988743
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.33 E-value=8.9e-12 Score=108.10 Aligned_cols=83 Identities=25% Similarity=0.265 Sum_probs=31.4
Q ss_pred CCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCcCchhhhcCCCCceeeCC
Q 011044 153 QLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLS 232 (495)
Q Consensus 153 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 232 (495)
+|++|++++|.+++..|..|..+++|++|+|++|.+++..+..|.++++|++|++++|.+++..+..+..+++|++|+++
T Consensus 34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~ 113 (174)
T 2r9u_A 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLY 113 (174)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeC
Confidence 33444444444433333333344444444444444433222223333444444444443332222223333334444443
Q ss_pred CCc
Q 011044 233 LNN 235 (495)
Q Consensus 233 ~n~ 235 (495)
+|.
T Consensus 114 ~N~ 116 (174)
T 2r9u_A 114 NNP 116 (174)
T ss_dssp SSC
T ss_pred CCC
Confidence 333
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.32 E-value=5.3e-14 Score=137.54 Aligned_cols=168 Identities=15% Similarity=0.163 Sum_probs=127.4
Q ss_pred CCeEEEEcCCCCCcccCchhc----c-CCCCCCEEeCcCCcCCccCCcccc-CCCCCcEEEccCCcccccCChhHh----
Q 011044 55 HRVAALNISGLNLTGTIPSEL----A-NLSSLQALDLSFNWFYGSIPSSIF-NMSSLLSIYFNNNTLFGELPPNFC---- 124 (495)
Q Consensus 55 ~~l~~L~L~~~~l~~~~~~~l----~-~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~l~~n~~~~~~p~~~~---- 124 (495)
+.++.|+|++|.++......+ . ..++|++|+|++|.+++.....+. .+++|++|++++|.+.+.....+.
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 579999999999986544333 3 237999999999999765443333 467899999999999655444443
Q ss_pred hcCCCCCEEEcccccCCcc----CCcccCCCCCCCEEEcccCcCccc----cCccccCCCCCCEEEccCCCCCCC----C
Q 011044 125 NQMSNLESLFLKYNMFHGK----IPSTLSSCKQLRELSLSSNYFSGT----IPKEIGNLTKLTRLNLRQNKLQGE----I 192 (495)
Q Consensus 125 ~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~ 192 (495)
...++|++|++++|.++.. ++..+..+++|++|+|++|.++.. ++..+...++|++|+|++|.++.. +
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 2368899999999998752 445557889999999999998753 355667788999999999998753 3
Q ss_pred ChhhhCcccccEEEecCCcCCCcCchhhhc
Q 011044 193 PEELGNLAELEMLWLQNNSLTGTIPSSIFS 222 (495)
Q Consensus 193 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~ 222 (495)
+..+...++|++|++++|.++......+..
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~ 261 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSSEGRQVLRD 261 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCHHHHHHHHH
T ss_pred HHHHHhCCCCCEEeccCCCCCHHHHHHHHH
Confidence 344556789999999999998654445544
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.31 E-value=1e-11 Score=107.67 Aligned_cols=105 Identities=27% Similarity=0.375 Sum_probs=90.8
Q ss_pred CCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCcCchhhhcCCCCceeeCCC
Q 011044 154 LRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSL 233 (495)
Q Consensus 154 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~ 233 (495)
-+.+++++|.++ .+|..+. ++|++|++++|.+.+..|..|.++++|++|++++|.+++..+..+..+++|++|+|++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 367888888886 5676654 7899999999999988888899999999999999999976566678899999999999
Q ss_pred CcCCCCCCcccccccccceeeccCcccc
Q 011044 234 NNFTGIIPSSIGNLSSLQKLYLSDNQLS 261 (495)
Q Consensus 234 n~l~~~~~~~l~~~~~L~~L~l~~n~l~ 261 (495)
|.+++..+..+..+++|+.|++++|.+.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcc
Confidence 9999877777889999999999999887
No 146
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.23 E-value=2.5e-10 Score=112.80 Aligned_cols=286 Identities=14% Similarity=0.088 Sum_probs=205.8
Q ss_pred CCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcc-------------------
Q 011044 55 HRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTL------------------- 115 (495)
Q Consensus 55 ~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~------------------- 115 (495)
.+|+.+.|+. .++.....+|.++++|+.+++..+ ++..-..+|.++.+|+.+.+..+-.
T Consensus 71 ~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~~~ 148 (394)
T 4fs7_A 71 RKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEITIPE 148 (394)
T ss_dssp TTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEECCT
T ss_pred CCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccccccccCc
Confidence 5799999975 476666678999999999999755 5544456777787777766543210
Q ss_pred -cccCChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCCh
Q 011044 116 -FGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPE 194 (495)
Q Consensus 116 -~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 194 (495)
...+....+..+.+|+.+.+..+. .......|.++.+|+.+.+..+ ++......|.++..|+.+.+..+... +..
T Consensus 149 ~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~ 224 (394)
T 4fs7_A 149 GVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGD 224 (394)
T ss_dssp TCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECT
T ss_pred cccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eeh
Confidence 012334445568999999997654 3245567889999999999876 55455567888999999888766432 223
Q ss_pred hhhCcccccEEEecCCcCCCcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCcc
Q 011044 195 ELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPS 274 (495)
Q Consensus 195 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~ 274 (495)
.......|+.+.+... ++......+..+..|+.+.+..+.. ......+..+..++.+...... ++...+..+.+
T Consensus 225 ~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~----i~~~~F~~~~~ 298 (394)
T 4fs7_A 225 FALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVI----VPEKTFYGCSS 298 (394)
T ss_dssp TTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSE----ECTTTTTTCTT
T ss_pred hhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcc-eeeccccccccccceeccCcee----ecccccccccc
Confidence 3445578888888643 3323445678889999999987643 3455667788888888776653 33344447888
Q ss_pred ccccccccceeeecccccccCCCCCCeeecccccccccCCccccCCCcCCEEeCcCCcccccCCcCccCCCCCcEEEccC
Q 011044 275 LQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHN 354 (495)
Q Consensus 275 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 354 (495)
|+.+.+..+ +.......|.++.+|+.+++..+ ++.....+|.+|.+|+.+.+..+ +......+|.++.+|+.+++..
T Consensus 299 L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 299 LTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred ccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence 999888755 44455667889999999999754 65555678999999999999776 6666777899999999999876
Q ss_pred C
Q 011044 355 N 355 (495)
Q Consensus 355 n 355 (495)
+
T Consensus 376 ~ 376 (394)
T 4fs7_A 376 R 376 (394)
T ss_dssp G
T ss_pred C
Confidence 4
No 147
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.23 E-value=3.7e-10 Score=111.58 Aligned_cols=306 Identities=12% Similarity=0.124 Sum_probs=168.0
Q ss_pred eEEEEcCCCCCcccCchhccCCCCCCEEeCcCCc---CCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEE
Q 011044 57 VAALNISGLNLTGTIPSELANLSSLQALDLSFNW---FYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESL 133 (495)
Q Consensus 57 l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~---l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L 133 (495)
|+.+.+... ++.....+|.++++|+.+.+..|. ++..-..+|.+|.+|+.+.+..+- ..++...+..+.+|+.+
T Consensus 66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~~--~~I~~~aF~~c~~L~~i 142 (394)
T 4gt6_A 66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDSV--TEIDSEAFHHCEELDTV 142 (394)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTTC--SEECTTTTTTCTTCCEE
T ss_pred CEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCcc--ceehhhhhhhhcccccc
Confidence 556666542 444444566666777777665542 333334556666666666555442 24444444446667777
Q ss_pred EcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCC
Q 011044 134 FLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLT 213 (495)
Q Consensus 134 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 213 (495)
.+..+ +.......|..+..|+.+.+..+ ++..-...|. ..+|+.+.+..+... .....+.++.++...........
T Consensus 143 ~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~~~~~~~~ 218 (394)
T 4gt6_A 143 TIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTR-IGTNAFSECFALSTITSDSESYP 218 (394)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCE-ECTTTTTTCTTCCEEEECCSSSC
T ss_pred cccce-eeeecccceecccccccccccce-eeEecccccc-ccceeEEEECCcccc-cccchhhhccccceecccccccc
Confidence 66543 22233445666666776666543 3322223333 345666666544222 33344556666666555433222
Q ss_pred CcCchh--------------hhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccc
Q 011044 214 GTIPSS--------------IFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLS 279 (495)
Q Consensus 214 ~~~~~~--------------l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 279 (495)
. .... +.....+..+.+.. .+.......|..+..|+.+.+..+.. .+....+..++.|+.+.
T Consensus 219 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~--~I~~~aF~~c~~L~~i~ 294 (394)
T 4gt6_A 219 A-IDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVV--SIGTGAFMNCPALQDIE 294 (394)
T ss_dssp B-SSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCC--EECTTTTTTCTTCCEEE
T ss_pred c-ccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccccc--eecCccccccccccccc
Confidence 0 0000 01112233333322 12223345677788888888866533 34444444778888888
Q ss_pred cccceeeecccccccCCCCCCeeecccccccccCCccccCCCcCCEEeCcCCcccccCCcCccCCCCCcEEEccCCcCce
Q 011044 280 LYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSG 359 (495)
Q Consensus 280 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 359 (495)
+.. .+.......|.++.+|+.+++..+ ++.....+|.+|.+|+.+.+..+ ++.....+|.+|.+|+.+++.++....
T Consensus 295 l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~ 371 (394)
T 4gt6_A 295 FSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW 371 (394)
T ss_dssp CCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH
T ss_pred CCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh
Confidence 863 344455567888889999988764 55455677888999999988654 555556678889999999988875431
Q ss_pred ecCCCCCCCCCChhhhhhhhc
Q 011044 360 SLPSSADVPLPNLEELFLWEY 380 (495)
Q Consensus 360 ~~~~~~~~~l~~L~~L~l~~~ 380 (495)
..+..+..|+.+.+..+
T Consensus 372 ----~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 372 ----NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp ----HTCBCCCCC--------
T ss_pred ----hhhhccCCCCEEEeCCC
Confidence 12224566776665443
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.15 E-value=1.8e-10 Score=111.67 Aligned_cols=108 Identities=19% Similarity=0.176 Sum_probs=77.3
Q ss_pred CCccceeeeCCCCCCeEEEEcCCC-CCcccCchhccCCCCCCEEeCcC-CcCCccCCccccCCCCCcEEEccCCcccccC
Q 011044 42 FCYWTGVTCDVRSHRVAALNISGL-NLTGTIPSELANLSSLQALDLSF-NWFYGSIPSSIFNMSSLLSIYFNNNTLFGEL 119 (495)
Q Consensus 42 ~c~w~gv~c~~~~~~l~~L~L~~~-~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 119 (495)
.|.|..+.|. ++ +++ .+|. |..+++|++|+|++ |.+++..+..|.++++|++|+|++|.+.+..
T Consensus 7 ~C~~~~v~~~------------~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 72 (347)
T 2ifg_A 7 PHGSSGLRCT------------RDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA 72 (347)
T ss_dssp CSSSSCEECC------------SSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC
T ss_pred cccCCEEEcC------------CCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeC
Confidence 4766666553 44 666 3677 89999999999996 9998777778888888888888888886655
Q ss_pred ChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCCEEEcccCcCc
Q 011044 120 PPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFS 165 (495)
Q Consensus 120 p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 165 (495)
|..|.. +++|+.|+|++|.+++..+..+..++ |+.|++.+|.+.
T Consensus 73 ~~~~~~-l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 73 PDAFHF-TPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp TTGGGS-CSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred HHHhcC-CcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 444443 77788888877777754444454444 777777776665
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.12 E-value=2.3e-10 Score=111.02 Aligned_cols=104 Identities=21% Similarity=0.216 Sum_probs=72.9
Q ss_pred EEEcccc-cCCccCCcccCCCCCCCEEEccc-CcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecC
Q 011044 132 SLFLKYN-MFHGKIPSTLSSCKQLRELSLSS-NYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQN 209 (495)
Q Consensus 132 ~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 209 (495)
.++.+++ .++ .+|. +..+++|++|+|++ |.+++..+..|..+++|++|+|++|.+++..|..|.++++|+.|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4566666 666 4666 77777788888875 777766666777777788888877777776677777777777777777
Q ss_pred CcCCCcCchhhhcCCCCceeeCCCCcCCC
Q 011044 210 NSLTGTIPSSIFSLSSLLNLDLSLNNFTG 238 (495)
Q Consensus 210 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 238 (495)
|.+++..+..+..++ |+.|+|.+|.+..
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 777754444444444 7777777776653
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.08 E-value=6.1e-09 Score=102.77 Aligned_cols=296 Identities=9% Similarity=0.083 Sum_probs=200.0
Q ss_pred CchhccCCC-CCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcc--cccCChhHhhcCCCCCEEEcccccCCccCCcc
Q 011044 71 IPSELANLS-SLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTL--FGELPPNFCNQMSNLESLFLKYNMFHGKIPST 147 (495)
Q Consensus 71 ~~~~l~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~--~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~ 147 (495)
...+|.++. .|+.+.+-.+ ++..-..+|.+|.+|+.+.+..|.- ...+....+..+.+|+.+.+..+ ++......
T Consensus 55 g~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~a 132 (394)
T 4gt6_A 55 GDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEA 132 (394)
T ss_dssp CTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTT
T ss_pred CHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhh
Confidence 345677774 5999999654 6656677899999999999987631 24566666666888988887655 44344567
Q ss_pred cCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCcCchhhhcCCCCc
Q 011044 148 LSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLL 227 (495)
Q Consensus 148 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 227 (495)
|..+.+|+.+.+..+ +.......|..+..|+.+.+..+ +...-..+|. ...|+.+.+..+-.. .....+..+.++.
T Consensus 133 F~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~-i~~~af~~c~~l~ 208 (394)
T 4gt6_A 133 FHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTR-IGTNAFSECFALS 208 (394)
T ss_dssp TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCE-ECTTTTTTCTTCC
T ss_pred hhhhcccccccccce-eeeecccceecccccccccccce-eeEecccccc-ccceeEEEECCcccc-cccchhhhccccc
Confidence 888999999999754 44345567888899999998765 3323334454 356888888654332 4445677788888
Q ss_pred eeeCCCCcCCCCCCccc-------------ccccccceeeccCcccccccchhhhhCCccccccccccceeeeccccccc
Q 011044 228 NLDLSLNNFTGIIPSSI-------------GNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIG 294 (495)
Q Consensus 228 ~L~Ls~n~l~~~~~~~l-------------~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 294 (495)
................+ .....+..+.+... +. .+....+..+..|+.+.+..+... .....+.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~-~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~ 285 (394)
T 4gt6_A 209 TITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG-VA-RIETHAFDSCAYLASVKMPDSVVS-IGTGAFM 285 (394)
T ss_dssp EEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT-EE-EECTTTTTTCSSCCEEECCTTCCE-ECTTTTT
T ss_pred eecccccccccccceeecccccccccccccccccccceEEcCCc-ce-EcccceeeecccccEEecccccce-ecCcccc
Confidence 77765544321111001 11122333333221 22 233334447888999988765443 5556788
Q ss_pred CCCCCCeeecccccccccCCccccCCCcCCEEeCcCCcccccCCcCccCCCCCcEEEccCCcCceecCCCCCCCCCChhh
Q 011044 295 NLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEE 374 (495)
Q Consensus 295 ~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 374 (495)
+++.|+.+.+.. .++.....+|.+|.+|+.+.+..+ ++.....+|.+|.+|+.+.+..+ +. .+....+..+++|+.
T Consensus 286 ~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~~L~~ 361 (394)
T 4gt6_A 286 NCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNCTALNN 361 (394)
T ss_dssp TCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTCTTCCE
T ss_pred cccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCCCCCCE
Confidence 899999999974 455455678999999999999764 66566778999999999999755 54 677778888999998
Q ss_pred hhhhh
Q 011044 375 LFLWE 379 (495)
Q Consensus 375 L~l~~ 379 (495)
+.+.+
T Consensus 362 i~~~~ 366 (394)
T 4gt6_A 362 IEYSG 366 (394)
T ss_dssp EEESS
T ss_pred EEECC
Confidence 87754
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.03 E-value=8.4e-11 Score=113.90 Aligned_cols=210 Identities=15% Similarity=0.160 Sum_probs=99.3
Q ss_pred CCCeEEEEcCCCCCcc-cC-------chhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhh
Q 011044 54 SHRVAALNISGLNLTG-TI-------PSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCN 125 (495)
Q Consensus 54 ~~~l~~L~L~~~~l~~-~~-------~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~ 125 (495)
+.+|+.|.+......+ .. ..++..+++|+.|.+........ .+ +... .+.+. .+..
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~---~i-----------s~~~-~~~L~-~ll~ 169 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQ---EI-----------SWIE-QVDLS-PVLD 169 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTC---CG-----------GGCB-CCBCH-HHHH
T ss_pred chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhc---cc-----------cccc-ccCHH-HHHh
Confidence 3568888887655542 21 23345677888887755422100 00 0000 01111 2222
Q ss_pred cCCCCCEEEcccccCCccCCcccCCCCCCCEEEcccCcCccccCcccc--CCCCCCEEEccC--CCCCCC-----CChhh
Q 011044 126 QMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIG--NLTKLTRLNLRQ--NKLQGE-----IPEEL 196 (495)
Q Consensus 126 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~--~l~~L~~L~L~~--n~l~~~-----~~~~l 196 (495)
.+|+|+.|.+++|.-. .++. +. +++|+.|++..|.+.......+. .+++|++|+|+. +...+. +...+
T Consensus 170 ~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l 246 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF 246 (362)
T ss_dssp TCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGS
T ss_pred cCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHH
Confidence 3555555555554211 1122 22 45566666655554433222232 456666665532 111111 01111
Q ss_pred --hCcccccEEEecCCcCCCcCchhhh---cCCCCceeeCCCCcCCCC----CCcccccccccceeeccCcccccccchh
Q 011044 197 --GNLAELEMLWLQNNSLTGTIPSSIF---SLSSLLNLDLSLNNFTGI----IPSSIGNLSSLQKLYLSDNQLSGELPAN 267 (495)
Q Consensus 197 --~~l~~L~~L~l~~n~l~~~~~~~l~---~l~~L~~L~Ls~n~l~~~----~~~~l~~~~~L~~L~l~~n~l~~~~~~~ 267 (495)
..+++|+.|++.+|.+....+..+. .+++|++|+|+.|.+++. ++..+..+++|+.|++++|.+++.....
T Consensus 247 ~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~ 326 (362)
T 2ra8_A 247 SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKE 326 (362)
T ss_dssp CTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHH
T ss_pred hcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHH
Confidence 2456777777776666533333333 356777777777766643 2233345677777777777766443333
Q ss_pred hhhCCccccccccccce
Q 011044 268 IGNNLPSLQTLSLYVND 284 (495)
Q Consensus 268 ~~~~l~~L~~L~L~~n~ 284 (495)
+...+ ...++++.+.
T Consensus 327 l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 327 LQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHC--CSEEECCSBC
T ss_pred HHHHc--CCEEEecCCc
Confidence 33111 2335555544
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.99 E-value=5.5e-08 Score=95.35 Aligned_cols=283 Identities=10% Similarity=0.086 Sum_probs=123.8
Q ss_pred CeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEc
Q 011044 56 RVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFL 135 (495)
Q Consensus 56 ~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l 135 (495)
+|+.+.+.. +++.....+|.++.+|+.+.|..+ ++..-..+|.++ +|+.+.+..+ + ..++...+. ..+|+.+.+
T Consensus 47 ~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l-~~I~~~aF~-~~~L~~i~l 120 (379)
T 4h09_A 47 RISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-V-KKFGDYVFQ-GTDLDDFEF 120 (379)
T ss_dssp GCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-C-CEECTTTTT-TCCCSEEEC
T ss_pred CCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-e-eEeccceec-cCCcccccC
Confidence 566666653 355444556777777777777543 443444556666 5666665543 2 244444444 236777776
Q ss_pred ccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCC------------CChhhhCccccc
Q 011044 136 KYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGE------------IPEELGNLAELE 203 (495)
Q Consensus 136 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~------------~~~~l~~l~~L~ 203 (495)
..+- .......|.++ +|+.+.+..+ ++......+..+..++.+.+..+..... ....+.....+.
T Consensus 121 p~~~-~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (379)
T 4h09_A 121 PGAT-TEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGT 197 (379)
T ss_dssp CTTC-CEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCS
T ss_pred CCcc-ccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecccccccccc
Confidence 5542 21222334333 4555444432 3323334455566666665554332100 001111222222
Q ss_pred EEEecCCcCCCcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccccc
Q 011044 204 MLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVN 283 (495)
Q Consensus 204 ~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n 283 (495)
.+.+.... .......+..+.+|+.+.+..+ +..+....+..+..|+.+.+..+ ++ .+....+..+.+|+.+.+..+
T Consensus 198 ~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~-~I~~~aF~~~~~l~~i~l~~~ 273 (379)
T 4h09_A 198 EFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VT-SIGSFLLQNCTALKTLNFYAK 273 (379)
T ss_dssp EEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CC-EECTTTTTTCTTCCEEEECCC
T ss_pred ccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-cc-EeCccccceeehhcccccccc
Confidence 22222111 1112223334444555444332 22222333444455555554433 22 222222324444444444322
Q ss_pred eeeecccccccCCCCCCeeecccccccccCCccccCCCcCCEEeCcCCcccccCCcCccCCCCCcEEEcc
Q 011044 284 DFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLH 353 (495)
Q Consensus 284 ~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 353 (495)
+.......+.++.+|+.+.+.++.++.....+|.+|.+|+.+.+..+ ++.....+|.++.+|+.+.+.
T Consensus 274 -i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 274 -VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp -CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred -ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 22222233444555555555444444333344555555555555332 333333444455555544443
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.94 E-value=1.1e-09 Score=106.11 Aligned_cols=133 Identities=14% Similarity=0.114 Sum_probs=73.7
Q ss_pred CCCeEEEEcCCCCCc---------ccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHh
Q 011044 54 SHRVAALNISGLNLT---------GTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFC 124 (495)
Q Consensus 54 ~~~l~~L~L~~~~l~---------~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~ 124 (495)
.++|+.|.+.+.... +.+...+..+|+|+.|+|++|.-. .++. +. +++|++|++..|.+.......+.
T Consensus 138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~ 214 (362)
T 2ra8_A 138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDIL 214 (362)
T ss_dssp HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHH
T ss_pred cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHH
Confidence 368999998765331 234456678899999999887311 2333 33 78888888888776544434444
Q ss_pred h-cCCCCCEEEcccc--cCCcc-----CCccc--CCCCCCCEEEcccCcCccccCcccc---CCCCCCEEEccCCCCC
Q 011044 125 N-QMSNLESLFLKYN--MFHGK-----IPSTL--SSCKQLRELSLSSNYFSGTIPKEIG---NLTKLTRLNLRQNKLQ 189 (495)
Q Consensus 125 ~-~l~~L~~L~l~~n--~l~~~-----~~~~l--~~l~~L~~L~l~~n~l~~~~~~~l~---~l~~L~~L~L~~n~l~ 189 (495)
. .+++|++|+|+.+ ...+. +...+ ..+++|++|++.+|.+....+..+. .+++|++|+|+.|.+.
T Consensus 215 ~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~ 292 (362)
T 2ra8_A 215 GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLT 292 (362)
T ss_dssp HSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCB
T ss_pred HccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCC
Confidence 2 4788888887532 11111 11112 2355566666655555432222221 2344555555555444
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.79 E-value=5.8e-07 Score=87.96 Aligned_cols=276 Identities=13% Similarity=0.086 Sum_probs=185.2
Q ss_pred CCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEE
Q 011044 55 HRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLF 134 (495)
Q Consensus 55 ~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~ 134 (495)
.+|+.++|..+ ++.....+|.++ .|+.+.+..+ ++.....+|..+ +|+.+.+..+. ..+....+. ..+|+.+.
T Consensus 69 ~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~~i~lp~~~--~~i~~~~F~-~~~l~~~~ 141 (379)
T 4h09_A 69 YNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLDDFEFPGAT--TEIGNYIFY-NSSVKRIV 141 (379)
T ss_dssp TTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCSEEECCTTC--CEECTTTTT-TCCCCEEE
T ss_pred CCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-CcccccCCCcc--ccccccccc-cceeeeee
Confidence 57889999754 665556678877 6888877544 443334455554 89999997753 244444444 33677776
Q ss_pred cccccCCccCCcccCCCCCCCEEEcccCcCcc------------ccCccccCCCCCCEEEccCCCCCCCCChhhhCcccc
Q 011044 135 LKYNMFHGKIPSTLSSCKQLRELSLSSNYFSG------------TIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAEL 202 (495)
Q Consensus 135 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~------------~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 202 (495)
+..+ ++......+..+.+++.+.+..+.... .....+.....+..+.+...... .....+....+|
T Consensus 142 ~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~f~~~~~l 219 (379)
T 4h09_A 142 IPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVKT-VTAYGFSYGKNL 219 (379)
T ss_dssp ECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCCE-ECTTTTTTCSSC
T ss_pred ccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccccccccccccceeE-Eeeccccccccc
Confidence 6544 333445567788888888776543221 11223344556666666544322 334556777888
Q ss_pred cEEEecCCcCCCcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCcccccccccc
Q 011044 203 EMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYV 282 (495)
Q Consensus 203 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~ 282 (495)
+.+.+..+ +.......+.++..|+.+.+..+ ++.+....+..+.+|+.+.+..+ +. .++...+..+.+|+.+.+.+
T Consensus 220 ~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l~~ 295 (379)
T 4h09_A 220 KKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSNLTKVVMDN 295 (379)
T ss_dssp SEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTTTTTCTTCCEEEECC
T ss_pred ceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-eccccccccccccccccccc
Confidence 88888654 33344567788899999999765 55555667888899999998654 43 45555566889999999988
Q ss_pred ceeeecccccccCCCCCCeeecccccccccCCccccCCCcCCEEeCcCCcccccCCcCccCCC
Q 011044 283 NDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLS 345 (495)
Q Consensus 283 n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 345 (495)
+.+.......|.++.+|+.+.|..+ ++.....+|.+|.+|+.+.+..+ ++.....+|.++.
T Consensus 296 ~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 296 SAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred cccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 8777666778999999999999764 55455678999999999988654 5544555666553
No 155
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=98.76 E-value=1.3e-09 Score=102.97 Aligned_cols=93 Identities=18% Similarity=0.292 Sum_probs=62.1
Q ss_pred ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044 384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME 463 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~ 463 (495)
+..+.++|||||||++.||+||+.|.... .+ ...+....... ...+.+.. ....|...+.++...
T Consensus 212 ~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~----~~-~~~~~~~~~~~---~~~p~~~~-------~~~~~~~~l~~li~~ 276 (307)
T 3omv_A 212 NPFSFQSDVYSYGIVLYELMTGELPYSHI----NN-RDQIIFMVGRG---YASPDLSK-------LYKNCPKAMKRLVAD 276 (307)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHSSCTTTTC----CC-HHHHHHHHHTT---CCCCCSTT-------SCTTSCHHHHHHHHH
T ss_pred CCCCcHHHhHhHHHHHHHHHHCCCCCCCC----Ch-HHHHHHHHhcC---CCCCCccc-------ccccchHHHHHHHHH
Confidence 45678899999999999999999996431 12 12222222111 11111110 112344557889999
Q ss_pred cCCCCccCchhHHHHHHHHHHHHHHHHh
Q 011044 464 CTVESPIRESTQRKLLQDSQKLETRCLK 491 (495)
Q Consensus 464 C~~~~p~~Rp~m~~v~~~l~~i~~~~~~ 491 (495)
|.+.+|.+||+|.||++.|+.++...-+
T Consensus 277 cl~~dP~~RPs~~ei~~~Le~l~~~lpk 304 (307)
T 3omv_A 277 CVKKVKEERPLFPQILSSIELLQHSLPK 304 (307)
T ss_dssp HTCSSSTTSCCHHHHHHHHHHHHTTCCC
T ss_pred HcCCCHhHCcCHHHHHHHHHHHhccCCC
Confidence 9999999999999999999988765433
No 156
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=98.76 E-value=5e-09 Score=99.23 Aligned_cols=95 Identities=11% Similarity=0.080 Sum_probs=62.1
Q ss_pred ccccCCCcceeehhhhhhcccCCCCCccccCC----------CCCHHHHHHHHhCCCcceeeeccccccccccccchhhH
Q 011044 384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNG----------EMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQC 453 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~----------~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~ 453 (495)
++.+.++|||||||++.||+||+.|....... ......+.+...... .++.+-... ...++
T Consensus 193 ~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~----~rp~~p~~~-----~~~~~ 263 (303)
T 3hmm_A 193 FESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQK----LRPNIPNRW-----QSCEA 263 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSC----CCCCCCGGG-----GSSHH
T ss_pred CccChhHhhhhHHHHHHHHHHCCCCCCccccccccchhcccccchHHHHHHHHhccc----CCCCCCccc-----cchHH
Confidence 35677899999999999999998765322111 122222222222211 122221110 12245
Q ss_pred HHHHHHHHhhcCCCCccCchhHHHHHHHHHHHHH
Q 011044 454 MSFVFNLAMECTVESPIRESTQRKLLQDSQKLET 487 (495)
Q Consensus 454 ~~~~~~~~~~C~~~~p~~Rp~m~~v~~~l~~i~~ 487 (495)
...+.+++..|.+.+|.+||||.||++.|+.++.
T Consensus 264 ~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l~~ 297 (303)
T 3hmm_A 264 LRVMAKIMRECWYANGAARLTALRIKKTLSQLSQ 297 (303)
T ss_dssp HHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHH
Confidence 6678899999999999999999999999998864
No 157
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=98.69 E-value=2.6e-09 Score=101.18 Aligned_cols=87 Identities=22% Similarity=0.408 Sum_probs=60.3
Q ss_pred hcCCCccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHH
Q 011044 379 EYGREGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFV 457 (495)
Q Consensus 379 ~~~~~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~ 457 (495)
|.-..+..+.++|||||||++.|++| |+.|... .+-.+.++......... ..+.|...+
T Consensus 217 E~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~-----~~~~~~~~~i~~~~~~~---------------~p~~~~~~~ 276 (308)
T 4gt4_A 217 EAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCG-----YSNQDVVEMIRNRQVLP---------------CPDDCPAWV 276 (308)
T ss_dssp HHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTT-----CCHHHHHHHHHTTCCCC---------------CCTTCCHHH
T ss_pred HHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCC-----CCHHHHHHHHHcCCCCC---------------CcccchHHH
Confidence 43345567889999999999999999 8888643 22223332222221111 012345568
Q ss_pred HHHHhhcCCCCccCchhHHHHHHHHHHH
Q 011044 458 FNLAMECTVESPIRESTQRKLLQDSQKL 485 (495)
Q Consensus 458 ~~~~~~C~~~~p~~Rp~m~~v~~~l~~i 485 (495)
.++...|.+.+|.+||+|.||++.|+.+
T Consensus 277 ~~li~~C~~~dP~~RPs~~ei~~~L~a~ 304 (308)
T 4gt4_A 277 YALMIECWNEFPSRRPRFKDIHSRLRAW 304 (308)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred HHHHHHHcCCChhHCcCHHHHHHHHHhc
Confidence 8899999999999999999999999753
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.67 E-value=2.5e-10 Score=104.92 Aligned_cols=63 Identities=29% Similarity=0.362 Sum_probs=32.0
Q ss_pred cCCCCCEEEcccccCCc--cCCcccCCCCCCCEEEcccCcCccccCccccCCC--CCCEEEccCCCCCC
Q 011044 126 QMSNLESLFLKYNMFHG--KIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLT--KLTRLNLRQNKLQG 190 (495)
Q Consensus 126 ~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~--~L~~L~L~~n~l~~ 190 (495)
.+++|++|+|++|.+++ .++..+..+++|+.|+|++|.+++. ..+..+. +|++|+|++|.+.+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGG
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcc
Confidence 35666666666666654 2334444555556666655555532 1222222 45555555555443
No 159
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=98.64 E-value=9.2e-09 Score=98.31 Aligned_cols=90 Identities=19% Similarity=0.302 Sum_probs=62.3
Q ss_pred hhcCCCccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHH
Q 011044 378 WEYGREGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSF 456 (495)
Q Consensus 378 ~~~~~~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~ 456 (495)
+|.......+.++|||||||++.||+| |+.|... .+-.+.+.......... . ...|...
T Consensus 229 PE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~-----~~~~~~~~~i~~g~~~~-----~----------p~~~~~~ 288 (329)
T 4aoj_A 229 PESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQ-----LSNTEAIDCITQGRELE-----R----------PRACPPE 288 (329)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCS-----SCHHHHHHHHHHTCCCC-----C----------CTTCCHH
T ss_pred hhhhcCCCCCccccccchHHHHHHHHcCCCCCCCC-----CCHHHHHHHHHcCCCCC-----C----------cccccHH
Confidence 344455667889999999999999999 8999643 22222222222111100 0 1123445
Q ss_pred HHHHHhhcCCCCccCchhHHHHHHHHHHHHH
Q 011044 457 VFNLAMECTVESPIRESTQRKLLQDSQKLET 487 (495)
Q Consensus 457 ~~~~~~~C~~~~p~~Rp~m~~v~~~l~~i~~ 487 (495)
+.++...|.+.+|.+||+|.||++.|+.+..
T Consensus 289 ~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~ 319 (329)
T 4aoj_A 289 VYAIMRGCWQREPQQRHSIKDVHARLQALAQ 319 (329)
T ss_dssp HHHHHHHHCCSSTTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcChhHCcCHHHHHHHHHHHhh
Confidence 7889999999999999999999999998864
No 160
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=98.62 E-value=8e-09 Score=97.34 Aligned_cols=87 Identities=18% Similarity=0.344 Sum_probs=60.6
Q ss_pred CCccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHH
Q 011044 382 REGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNL 460 (495)
Q Consensus 382 ~~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~ 460 (495)
..+..+.++|||||||++.||+| |+.|... .+-.+.+.......... ....|...+.++
T Consensus 203 ~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~-----~~~~~~~~~i~~~~~~~---------------~p~~~~~~~~~l 262 (299)
T 4asz_A 203 MYRKFTTESDVWSLGVVLWEIFTYGKQPWYQ-----LSNNEVIECITQGRVLQ---------------RPRTCPQEVYEL 262 (299)
T ss_dssp HHCCCCHHHHHHHHHHHHHHHHTTTCCTTTT-----SCHHHHHHHHHHTCCCC---------------CCTTCCHHHHHH
T ss_pred cCCCCCchhhHHHHHHHHHHHHcCCCCCCCC-----CCHHHHHHHHHcCCCCC---------------CCccchHHHHHH
Confidence 34567789999999999999999 8999643 22223332222221110 011234457889
Q ss_pred HhhcCCCCccCchhHHHHHHHHHHHHHH
Q 011044 461 AMECTVESPIRESTQRKLLQDSQKLETR 488 (495)
Q Consensus 461 ~~~C~~~~p~~Rp~m~~v~~~l~~i~~~ 488 (495)
...|.+.+|.+||+|.||++.|+.+.+.
T Consensus 263 i~~cl~~dP~~RPs~~~i~~~L~~~~~~ 290 (299)
T 4asz_A 263 MLGCWQREPHMRKNIKGIHTLLQNLAKA 290 (299)
T ss_dssp HHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHHHcCCChhHCcCHHHHHHHHHHHHhc
Confidence 9999999999999999999999988653
No 161
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.62 E-value=6.8e-09 Score=90.73 Aligned_cols=95 Identities=16% Similarity=0.111 Sum_probs=52.5
Q ss_pred cCchhccCCCCCCEEeCcCC-cCCcc----CCccccCCCCCcEEEccCCcccccCC----hhHhhcCCCCCEEEcccccC
Q 011044 70 TIPSELANLSSLQALDLSFN-WFYGS----IPSSIFNMSSLLSIYFNNNTLFGELP----PNFCNQMSNLESLFLKYNMF 140 (495)
Q Consensus 70 ~~~~~l~~l~~L~~L~L~~n-~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~~p----~~~~~~l~~L~~L~l~~n~l 140 (495)
.+...+...+.|++|+|++| .+... +...+...++|++|+|++|.+...-. ..+. ..++|++|+|++|.+
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~-~n~~L~~L~L~~N~i 105 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLK-VNNTLKSLNVESNFI 105 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHH-HCSSCCEEECCSSCC
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHH-hCCCcCEEECcCCcC
Confidence 34455667777888888877 76542 33445556677777777776643221 2222 245566666666655
Q ss_pred Ccc----CCcccCCCCCCCEEEc--ccCcCc
Q 011044 141 HGK----IPSTLSSCKQLRELSL--SSNYFS 165 (495)
Q Consensus 141 ~~~----~~~~l~~l~~L~~L~l--~~n~l~ 165 (495)
... +...+...+.|++|++ ++|.+.
T Consensus 106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 106 SGSGILALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp CHHHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred CHHHHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence 532 2333444455555555 445544
No 162
>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*
Probab=98.50 E-value=8.6e-08 Score=91.59 Aligned_cols=98 Identities=18% Similarity=0.343 Sum_probs=74.3
Q ss_pred ccccCCCcceeehhhhhhcccCCCCCccccC-CCCCHHHHHHHHhCCC-cceeeeccccccccccccchhhHHHHHHHHH
Q 011044 384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFN-GEMTLRRWVNDLLSIS-VMEVVDANLLSWKDKHFMTKEQCMSFVFNLA 461 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~-~~~~l~~wv~~~~~~~-~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~ 461 (495)
+..+.++||||||+++.|++||+.|...... +...+..|........ ...++++.+... ...++...+.++.
T Consensus 216 ~~~~~~~Di~slG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~li 289 (321)
T 2qkw_B 216 GRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNLADK------IRPESLRKFGDTA 289 (321)
T ss_dssp CBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSSSCCCHHHHTHHHHTTTCCCSSSSSSCTTC------SCHHHHHHHHHHH
T ss_pred CCCCcccchHhHHHHHHHHHhCCCcccccCcHHHHHHHHHhhhccccccHHHhcChhhccc------cCHHHHHHHHHHH
Confidence 4567789999999999999999999765433 2467778876655433 455666655322 1235677788999
Q ss_pred hhcCCCCccCchhHHHHHHHHHHHHH
Q 011044 462 MECTVESPIRESTQRKLLQDSQKLET 487 (495)
Q Consensus 462 ~~C~~~~p~~Rp~m~~v~~~l~~i~~ 487 (495)
..|.+.+|.+||++.||++.|+.+..
T Consensus 290 ~~~l~~dP~~Rps~~ell~~L~~~l~ 315 (321)
T 2qkw_B 290 VKCLALSSEDRPSMGDVLWKLEYALR 315 (321)
T ss_dssp HHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHHcCCCcccCcCHHHHHHHHHHHhh
Confidence 99999999999999999999987753
No 163
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.48 E-value=5.8e-08 Score=84.73 Aligned_cols=14 Identities=21% Similarity=0.014 Sum_probs=7.0
Q ss_pred ccccceeeccCccc
Q 011044 247 LSSLQKLYLSDNQL 260 (495)
Q Consensus 247 ~~~L~~L~l~~n~l 260 (495)
.++|++|++++|.+
T Consensus 150 n~~L~~L~L~~n~i 163 (185)
T 1io0_A 150 NTTLLKFGYHFTQQ 163 (185)
T ss_dssp CSSCCEEECCCSSH
T ss_pred CCCcCEEeccCCCC
Confidence 34455555555544
No 164
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=98.43 E-value=4e-08 Score=94.75 Aligned_cols=86 Identities=15% Similarity=0.284 Sum_probs=57.8
Q ss_pred CCccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCC-cceeeeccccccccccccchhhHHHHHHH
Q 011044 382 REGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSIS-VMEVVDANLLSWKDKHFMTKEQCMSFVFN 459 (495)
Q Consensus 382 ~~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~-~~~v~d~~l~~~~~~~~~~~~~~~~~~~~ 459 (495)
..+..+.++|||||||++.||+| |+.|....- ....+...+..+ ... . .+.+...+.+
T Consensus 260 ~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~-----~~~~~~~~i~~g~~~~-----~----------p~~~~~~~~~ 319 (353)
T 4ase_A 260 FDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVK-----IDEEFCRRLKEGTRMR-----A----------PDYTTPEMYQ 319 (353)
T ss_dssp HHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCC-----CSHHHHHHHHHTCCCC-----C----------CTTCCHHHHH
T ss_pred hcCCCCCcccEeehHHHHHHHHhCCCCCCCCCC-----HHHHHHHHHHcCCCCC-----C----------CccCCHHHHH
Confidence 34556788999999999999998 899964321 112222222111 000 0 0122334778
Q ss_pred HHhhcCCCCccCchhHHHHHHHHHHHHH
Q 011044 460 LAMECTVESPIRESTQRKLLQDSQKLET 487 (495)
Q Consensus 460 ~~~~C~~~~p~~Rp~m~~v~~~l~~i~~ 487 (495)
+...|.+.+|.+||+|.|+++.|+.+-.
T Consensus 320 li~~c~~~dP~~RPt~~eil~~L~~llq 347 (353)
T 4ase_A 320 TMLDCWHGEPSQRPTFSELVEHLGNLLQ 347 (353)
T ss_dssp HHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHHHHcCcChhHCcCHHHHHHHHHHHHH
Confidence 8899999999999999999999987643
No 165
>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*
Probab=98.43 E-value=8.1e-08 Score=91.96 Aligned_cols=95 Identities=23% Similarity=0.471 Sum_probs=74.0
Q ss_pred ccccCCCcceeehhhhhhcccCCCCCccc---cCCCCCHHHHHHHHhCCC-cceeeeccccccccccccchhhHHHHHHH
Q 011044 384 GRVSTNGDIYNFGIMIMETFTAKKPTDEI---FNGEMTLRRWVNDLLSIS-VMEVVDANLLSWKDKHFMTKEQCMSFVFN 459 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~tgk~p~~~~---~~~~~~l~~wv~~~~~~~-~~~v~d~~l~~~~~~~~~~~~~~~~~~~~ 459 (495)
+..+.++||||+|+++.|++||+.|.+.. ......+.+|++...... ...+.+..+... ....+...+.+
T Consensus 210 ~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~ 283 (326)
T 3uim_A 210 GKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEALVDVDLQGN------YKDEEVEQLIQ 283 (326)
T ss_dssp SEECHHHHHHHHHHHHHHHHHCCCSBCHHHHTTTSCSBHHHHHTTTTSSCCSTTSSCTTCTTS------CCHHHHHHHHH
T ss_pred CCCCccccchhHHHHHHHHHhCCCcccccccccccchhHHHHHHHHhhchhhhhhcChhhccc------cCHHHHHHHHH
Confidence 44677899999999999999999998632 234577889998877654 455556554322 23356777999
Q ss_pred HHhhcCCCCccCchhHHHHHHHHHH
Q 011044 460 LAMECTVESPIRESTQRKLLQDSQK 484 (495)
Q Consensus 460 ~~~~C~~~~p~~Rp~m~~v~~~l~~ 484 (495)
++..|.+.+|.+||++.||++.|+.
T Consensus 284 li~~cl~~dP~~Rps~~ell~~L~~ 308 (326)
T 3uim_A 284 VALLCTQSSPMERPKMSEVVRMLEG 308 (326)
T ss_dssp HHHHHTCSCGGGSCCHHHHHHHHHT
T ss_pred HHHHHhCcCCccCCCHHHHHHHhcC
Confidence 9999999999999999999999974
No 166
>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*
Probab=98.27 E-value=6.1e-07 Score=85.73 Aligned_cols=96 Identities=11% Similarity=0.092 Sum_probs=62.5
Q ss_pred ccccCCCcceeehhhhhhcccCCCCCccccCCC-----------CCHHHHHHHHhCCCcceeeeccccccccccccchhh
Q 011044 384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGE-----------MTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQ 452 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~-----------~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~ 452 (495)
...+.++||||||+++.|++||+.|.+...... .....+.......... +.+.... ....
T Consensus 213 ~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-----~~~~ 283 (322)
T 3soc_A 213 RDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEEEIGQHPSLEDMQEVVVHKKKR----PVLRDYW-----QKHA 283 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTBTTSSSCCCCCCCTTHHHHCSSCCHHHHHHHHTTSCCC----CCCCGGG-----GSSH
T ss_pred cCCCccchhHHHHHHHHHHHhCCCCCCCCcchhccchhhhhccCCchhhhhhhhhcccCC----CCccccc-----cccc
Confidence 345667899999999999999999865432211 1222222222221111 1110000 1124
Q ss_pred HHHHHHHHHhhcCCCCccCchhHHHHHHHHHHHHHH
Q 011044 453 CMSFVFNLAMECTVESPIRESTQRKLLQDSQKLETR 488 (495)
Q Consensus 453 ~~~~~~~~~~~C~~~~p~~Rp~m~~v~~~l~~i~~~ 488 (495)
+...+.++...|.+.+|.+||++.||++.|+.+++.
T Consensus 284 ~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~l~~~ 319 (322)
T 3soc_A 284 GMAMLCETIEECWDHDAEARLSAGCVGERITQMQRL 319 (322)
T ss_dssp HHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHH
Confidence 566688999999999999999999999999998753
No 167
>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*
Probab=98.26 E-value=6.5e-07 Score=84.45 Aligned_cols=92 Identities=15% Similarity=0.221 Sum_probs=61.1
Q ss_pred cccCCCcceeehhhhhhcccC----------CCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHH
Q 011044 385 RVSTNGDIYNFGIMIMETFTA----------KKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCM 454 (495)
Q Consensus 385 ~~~~~~dvysfgilllE~~tg----------k~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~ 454 (495)
..+.++||||||+++.|++|| +.|.............+.+........ +.+... .....+.
T Consensus 199 ~~~~~~DvwslG~il~el~tg~~~~~~~~~~~~pf~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-----~~~~~~~ 269 (301)
T 3q4u_A 199 DSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVPNDPSFEDMRKVVCVDQQR----PNIPNR-----WFSDPTL 269 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCC----CCCCGG-----GGGSHHH
T ss_pred cCCchhhHHHHHHHHHHHHhhhcCccccccccccccccCCCCcchhhhhHHHhccCCC----CCCChh-----hccCccH
Confidence 345689999999999999999 666544443344444433332222111 111000 0122456
Q ss_pred HHHHHHHhhcCCCCccCchhHHHHHHHHHHH
Q 011044 455 SFVFNLAMECTVESPIRESTQRKLLQDSQKL 485 (495)
Q Consensus 455 ~~~~~~~~~C~~~~p~~Rp~m~~v~~~l~~i 485 (495)
..+.++...|.+.+|.+||++.||++.|+.|
T Consensus 270 ~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i 300 (301)
T 3q4u_A 270 TSLAKLMKECWYQNPSARLTALRIKKTLTKI 300 (301)
T ss_dssp HHHHHHHHHHCCSSGGGSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcChhhCCCHHHHHHHHhcc
Confidence 6788999999999999999999999999876
No 168
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*
Probab=98.21 E-value=8.6e-07 Score=85.30 Aligned_cols=94 Identities=12% Similarity=0.188 Sum_probs=63.8
Q ss_pred ccCCCcceeehhhhhhcccC----------CCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHH
Q 011044 386 VSTNGDIYNFGIMIMETFTA----------KKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMS 455 (495)
Q Consensus 386 ~~~~~dvysfgilllE~~tg----------k~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~ 455 (495)
.+.++||||||+++.|++|| +.|.............+.+....... .+.+.... ...++..
T Consensus 234 ~~~~~Di~slG~il~el~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-----~~~~~~~ 304 (342)
T 1b6c_B 234 SFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKL----RPNIPNRW-----QSCEALR 304 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCC----CCCCCGGG-----GTSHHHH
T ss_pred cCCcccHHHHHHHHHHHHhccCcCCcccccccCccccCcCcccHHHHHHHHHHHHh----CCCCcccc-----cchhHHH
Confidence 34679999999999999999 55654433333455555544332221 11111000 1224566
Q ss_pred HHHHHHhhcCCCCccCchhHHHHHHHHHHHHHH
Q 011044 456 FVFNLAMECTVESPIRESTQRKLLQDSQKLETR 488 (495)
Q Consensus 456 ~~~~~~~~C~~~~p~~Rp~m~~v~~~l~~i~~~ 488 (495)
.+.++...|...+|.+||++.+|++.|+.+...
T Consensus 305 ~l~~li~~cl~~dp~~Rps~~~i~~~L~~i~~~ 337 (342)
T 1b6c_B 305 VMAKIMRECWYANGAARLTALRIKKTLSQLSQQ 337 (342)
T ss_dssp HHHHHHHHHCCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccChhhCCCHHHHHHHHHHHHHH
Confidence 788999999999999999999999999988754
No 169
>3gxj_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3hmm_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=98.18 E-value=4.1e-07 Score=85.87 Aligned_cols=94 Identities=11% Similarity=0.150 Sum_probs=53.9
Q ss_pred cccCCCcceeehhhhhhcccCCCC----------CccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHH
Q 011044 385 RVSTNGDIYNFGIMIMETFTAKKP----------TDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCM 454 (495)
Q Consensus 385 ~~~~~~dvysfgilllE~~tgk~p----------~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~ 454 (495)
..+.++||||||+++.|++||+.| .............+.+...... ..+.+... ....++.
T Consensus 194 ~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-----~~~~~~~ 264 (303)
T 3gxj_A 194 ESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQK----LRPNIPNR-----WQSCEAL 264 (303)
T ss_dssp HHHHHHHHHC-CCCC-CTGGGBCBTTBC-CCCCTTTTTCC-CCCCC-CHHHHTTSC----CCCCCCGG-----GGSSHHH
T ss_pred ccCcchhHHHHHHHHHHHHhcCCCccccceeeccccccCCCCccHHHHHHHHHHhh----cCCCcccc-----ccchhhH
Confidence 344679999999999999999444 3222111111111111111111 01111000 0112456
Q ss_pred HHHHHHHhhcCCCCccCchhHHHHHHHHHHHHH
Q 011044 455 SFVFNLAMECTVESPIRESTQRKLLQDSQKLET 487 (495)
Q Consensus 455 ~~~~~~~~~C~~~~p~~Rp~m~~v~~~l~~i~~ 487 (495)
..+.++...|.+.+|.+||++.+|+++|+.+..
T Consensus 265 ~~l~~li~~cl~~dP~~Rps~~~i~~~L~~l~~ 297 (303)
T 3gxj_A 265 RVMAKIMRECWYANGAARLTALRIKKTLSQLSQ 297 (303)
T ss_dssp HHHHHHHHTTCCSSGGGSCCHHHHHHHHHC-CC
T ss_pred HHHHHHHHHHhccCcccCCCHHHHHHHHHHhhh
Confidence 678999999999999999999999999987754
No 170
>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*
Probab=98.18 E-value=6.2e-07 Score=84.93 Aligned_cols=95 Identities=18% Similarity=0.338 Sum_probs=65.5
Q ss_pred cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCC--cceeeeccccccccccccchhhHHHHHHHHHh
Q 011044 385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSIS--VMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM 462 (495)
Q Consensus 385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~--~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~ 462 (495)
..+.++||||+|+++.|++||+.|.+..... ..+..|.+...... +.+.++..+.. ....+...+.++..
T Consensus 210 ~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~li~ 281 (307)
T 2nru_A 210 EITPKSDIYSFGVVLLEIITGLPAVDEHREP-QLLLDIKEEIEDEEKTIEDYIDKKMND-------ADSTSVEAMYSVAS 281 (307)
T ss_dssp EECTHHHHHHHHHHHHHHHHCCCSBCTTBSS-SBTTHHHHHHHTTSCCHHHHSCSSCSC-------CCHHHHHHHHHHHH
T ss_pred CCCccchhHHHHHHHHHHHHCCCCcccCcch-HHHHHHHHHhhhhhhhhhhhccccccc-------cchHHHHHHHHHHH
Confidence 4677899999999999999999997653322 22334444332221 23333433311 12245667889999
Q ss_pred hcCCCCccCchhHHHHHHHHHHHHH
Q 011044 463 ECTVESPIRESTQRKLLQDSQKLET 487 (495)
Q Consensus 463 ~C~~~~p~~Rp~m~~v~~~l~~i~~ 487 (495)
.|...+|.+||++.+|++.|++++.
T Consensus 282 ~cl~~~p~~Rps~~~l~~~L~~l~~ 306 (307)
T 2nru_A 282 QCLHEKKNKRPDIKKVQQLLQEMTA 306 (307)
T ss_dssp HHTCSSTTTSCCHHHHHHHHHHHC-
T ss_pred HHcCCCcccCcCHHHHHHHHHHHhc
Confidence 9999999999999999999998763
No 171
>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7
Probab=98.16 E-value=2.3e-06 Score=82.07 Aligned_cols=90 Identities=14% Similarity=0.294 Sum_probs=58.6
Q ss_pred CCcceeehhhhhhcccC----------CCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHH
Q 011044 389 NGDIYNFGIMIMETFTA----------KKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVF 458 (495)
Q Consensus 389 ~~dvysfgilllE~~tg----------k~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~ 458 (495)
++||||||+++.||+|| +.|.............+...........-..... ...++...+.
T Consensus 232 ~~DiwslG~il~el~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~ 302 (337)
T 3mdy_A 232 MADMYSFGLILWEVARRCVSGGIVEEYQLPYHDLVPSDPSYEDMREIVCIKKLRPSFPNRW---------SSDECLRQMG 302 (337)
T ss_dssp HHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCCGGG---------GGSHHHHHHH
T ss_pred ccchHHHHHHHHHHHhccCcccccccccccHhhhcCCCCchhhhHHHHhhhccCccccccc---------hhhHHHHHHH
Confidence 48999999999999999 4454433333333333322221111111011100 1235677789
Q ss_pred HHHhhcCCCCccCchhHHHHHHHHHHHHH
Q 011044 459 NLAMECTVESPIRESTQRKLLQDSQKLET 487 (495)
Q Consensus 459 ~~~~~C~~~~p~~Rp~m~~v~~~l~~i~~ 487 (495)
++...|.+.+|.+||++.||++.|+.+..
T Consensus 303 ~li~~~l~~dP~~Rps~~ell~~L~~l~~ 331 (337)
T 3mdy_A 303 KLMTECWAHNPASRLTALRVKKTLAKMSE 331 (337)
T ss_dssp HHHHHHSCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHHHHhhhhChhhCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999998865
No 172
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.15 E-value=2.7e-06 Score=78.06 Aligned_cols=80 Identities=34% Similarity=0.468 Sum_probs=50.1
Q ss_pred CCCCCCCEEEcccCcCcc--ccCccccCCCCCCEEEccCCCCCCCCChhhhCcc--cccEEEecCCcCCCcCc-------
Q 011044 149 SSCKQLRELSLSSNYFSG--TIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLA--ELEMLWLQNNSLTGTIP------- 217 (495)
Q Consensus 149 ~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~--~L~~L~l~~n~l~~~~~------- 217 (495)
.++++|+.|+|++|.+++ .++..+..+++|+.|+|++|.+.+. ..+..+. +|++|++++|.+.+.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 356777777887777775 3445556777777777777777643 2233333 67777777777665443
Q ss_pred hhhhcCCCCceee
Q 011044 218 SSIFSLSSLLNLD 230 (495)
Q Consensus 218 ~~l~~l~~L~~L~ 230 (495)
..+..+|+|+.|+
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 1244566666554
No 173
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.15 E-value=1e-06 Score=75.10 Aligned_cols=83 Identities=12% Similarity=0.109 Sum_probs=44.8
Q ss_pred CCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCc-CCccCCccccCC----CCCcEEEccCCc-ccccCChhHhhcCC
Q 011044 55 HRVAALNISGLNLTGTIPSELANLSSLQALDLSFNW-FYGSIPSSIFNM----SSLLSIYFNNNT-LFGELPPNFCNQMS 128 (495)
Q Consensus 55 ~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l----~~L~~L~l~~n~-~~~~~p~~~~~~l~ 128 (495)
.+|++||++++.+++.....+.++++|++|+|++|. +++.--..+..+ ++|++|++++|. +++.--..+. .++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-HFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-GCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-cCC
Confidence 357777777777766655666677777777777763 554433334432 245555555553 3322222222 245
Q ss_pred CCCEEEcccc
Q 011044 129 NLESLFLKYN 138 (495)
Q Consensus 129 ~L~~L~l~~n 138 (495)
+|++|++++|
T Consensus 140 ~L~~L~L~~c 149 (176)
T 3e4g_A 140 NLKYLFLSDL 149 (176)
T ss_dssp TCCEEEEESC
T ss_pred CCCEEECCCC
Confidence 5555555544
No 174
>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A
Probab=98.13 E-value=2.7e-07 Score=89.88 Aligned_cols=96 Identities=9% Similarity=0.023 Sum_probs=65.7
Q ss_pred CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044 383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM 462 (495)
Q Consensus 383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~ 462 (495)
....+.++|||||||++.|++||+.|...... ......+.+......+.++.++.+.. ..+...+.++..
T Consensus 235 ~~~~~~~~Di~slG~~l~el~~g~~Pf~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~li~ 304 (364)
T 3op5_A 235 GVAPSRRGDLEILGYCMIQWLTGHLPWEDNLK-DPKYVRDSKIRYRENIASLMDKCFPA---------ANAPGEIAKYME 304 (364)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTT-CHHHHHHHHHHHHHCHHHHHHHHSCT---------TCCCHHHHHHHH
T ss_pred CCCCCchhhHHHHHHHHHHHHhCCCCcccccc-CHHHHHHHHHHhhhhHHHHHHHhccc---------ccCHHHHHHHHH
Confidence 44467789999999999999999999764332 22333444444443433333333211 112344778889
Q ss_pred hcCCCCccCchhHHHHHHHHHHHHHH
Q 011044 463 ECTVESPIRESTQRKLLQDSQKLETR 488 (495)
Q Consensus 463 ~C~~~~p~~Rp~m~~v~~~l~~i~~~ 488 (495)
.|...+|.+||++.++++.|+.+..+
T Consensus 305 ~cl~~~p~~RP~~~~l~~~l~~~~~~ 330 (364)
T 3op5_A 305 TVKLLDYTEKPLYENLRDILLQGLKA 330 (364)
T ss_dssp HHHTCCTTCCCCHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999887653
No 175
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.09 E-value=2e-06 Score=73.24 Aligned_cols=14 Identities=14% Similarity=0.252 Sum_probs=5.6
Q ss_pred cCCCCCCEEEccCC
Q 011044 173 GNLTKLTRLNLRQN 186 (495)
Q Consensus 173 ~~l~~L~~L~L~~n 186 (495)
..+++|++|+|++|
T Consensus 82 ~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 82 EGLQYVEKIRLCKC 95 (176)
T ss_dssp TTCSCCCEEEEESC
T ss_pred cCCCCCCEEEeCCC
Confidence 33334444444443
No 176
>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}
Probab=98.03 E-value=1.5e-06 Score=81.13 Aligned_cols=78 Identities=17% Similarity=0.237 Sum_probs=50.9
Q ss_pred cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhc
Q 011044 385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMEC 464 (495)
Q Consensus 385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C 464 (495)
+.+.++|||||||++.||+||+.|.. +..+.....+....... .+.+ ...+...+.++...|
T Consensus 205 ~y~~~~DiwSlGvilyelltg~~Pf~----~~~~~~~~~~~i~~~~~----~~~~----------~~~~~~~~~~li~~~ 266 (290)
T 3fpq_A 205 KYDESVDVYAFGMCMLEMATSEYPYS----ECQNAAQIYRRVTSGVK----PASF----------DKVAIPEVKEIIEGC 266 (290)
T ss_dssp CCCTHHHHHHHHHHHHHHHHSSCTTT----TCSSHHHHHHHHTTTCC----CGGG----------GGCCCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHCCCCCC----CCCcHHHHHHHHHcCCC----CCCC----------CccCCHHHHHHHHHH
Confidence 46778999999999999999999953 33333333333222110 0001 001112366788899
Q ss_pred CCCCccCchhHHHHHH
Q 011044 465 TVESPIRESTQRKLLQ 480 (495)
Q Consensus 465 ~~~~p~~Rp~m~~v~~ 480 (495)
.+.+|.+||++.|+++
T Consensus 267 L~~dP~~R~s~~e~l~ 282 (290)
T 3fpq_A 267 IRQNKDERYSIKDLLN 282 (290)
T ss_dssp SCSSGGGSCCHHHHHT
T ss_pred ccCChhHCcCHHHHhc
Confidence 9999999999999863
No 177
>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}
Probab=98.00 E-value=1.4e-06 Score=82.60 Aligned_cols=87 Identities=20% Similarity=0.290 Sum_probs=58.1
Q ss_pred CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044 383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM 462 (495)
Q Consensus 383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~ 462 (495)
....+.++||||||+++.|++||+.|.+.... .............. +... ..+...+.++..
T Consensus 177 ~~~~~~~~Di~slG~il~el~~g~~p~~~~~~---~~~~~~~~~~~~~~-----~~~~----------~~~~~~l~~li~ 238 (307)
T 2eva_A 177 GSNYSEKCDVFSWGIILWEVITRRKPFDEIGG---PAFRIMWAVHNGTR-----PPLI----------KNLPKPIESLMT 238 (307)
T ss_dssp CCCCCTHHHHHHHHHHHHHHHHTCCTTTTTCS---SHHHHHHHHHTTCC-----CCCB----------TTCCHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHCCCCchhhCc---cHHHHHHHHhcCCC-----CCcc----------cccCHHHHHHHH
Confidence 44567789999999999999999999754221 11111111111110 0010 011234678899
Q ss_pred hcCCCCccCchhHHHHHHHHHHHHH
Q 011044 463 ECTVESPIRESTQRKLLQDSQKLET 487 (495)
Q Consensus 463 ~C~~~~p~~Rp~m~~v~~~l~~i~~ 487 (495)
.|...+|.+||++.++++.|+.+..
T Consensus 239 ~~l~~dp~~Rps~~ell~~L~~~~~ 263 (307)
T 2eva_A 239 RCWSKDPSQRPSMEEIVKIMTHLMR 263 (307)
T ss_dssp HHTCSSGGGSCCHHHHHHHHHHHGG
T ss_pred HHhcCChhhCcCHHHHHHHHHHHHH
Confidence 9999999999999999999998864
No 178
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain, alternative splicing, ATP-binding, disease MU kinase, metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Probab=98.00 E-value=6.7e-07 Score=84.82 Aligned_cols=92 Identities=16% Similarity=0.229 Sum_probs=59.5
Q ss_pred ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044 384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME 463 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~ 463 (495)
...+.++||||||+++.|++||+.|..... ............. ..+.+.. ....+...+.++...
T Consensus 212 ~~~~~~~Di~slG~il~elltg~~Pf~~~~----~~~~~~~~~~~~~----~~~~~~~-------~~~~~~~~l~~li~~ 276 (307)
T 3lb7_A 212 NPFSFQSDVYSYGIVLYELMTGELPYSHIN----NRDQIIFMVGRGY----ASPDLSK-------LYKNCPKAMKRLVAD 276 (307)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHSSCTTTTCC----CHHHHHHHHHHTC----CCCCSTT-------SCSSSCHHHHHHHHH
T ss_pred CCCCchhhHHHHHHHHHHHHhCCCCCccCC----cHHHHHHHHhcCC----CCcchhh-------hhcCCcHHHHHHHHH
Confidence 345678999999999999999999965321 1111111111110 0111100 011233457788999
Q ss_pred cCCCCccCchhHHHHHHHHHHHHHHHH
Q 011044 464 CTVESPIRESTQRKLLQDSQKLETRCL 490 (495)
Q Consensus 464 C~~~~p~~Rp~m~~v~~~l~~i~~~~~ 490 (495)
|.+.+|.+||++.|+++.++.++...-
T Consensus 277 ~l~~~p~~RPs~~~il~~l~~l~~~~p 303 (307)
T 3lb7_A 277 CVKKVKEERPLFPQILSSIELLQHSLP 303 (307)
T ss_dssp HSCSSSTTSCCHHHHHHHHHHHHTTCC
T ss_pred HhhCChhhCcCHHHHHHHHHHHHhhcc
Confidence 999999999999999999998876543
No 179
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Probab=97.96 E-value=1.7e-06 Score=84.50 Aligned_cols=86 Identities=28% Similarity=0.497 Sum_probs=58.8
Q ss_pred CccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044 383 EGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA 461 (495)
Q Consensus 383 ~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~ 461 (495)
.+..+.++||||||+++.|++| |+.|....-. ..+..++.. ..... ....+...+.++.
T Consensus 289 ~~~~~~~~DvwslG~il~el~t~g~~p~~~~~~--~~~~~~~~~---~~~~~---------------~~~~~~~~l~~li 348 (377)
T 3cbl_A 289 YGRYSSESDVWSFGILLWETFSLGASPYPNLSN--QQTREFVEK---GGRLP---------------CPELCPDAVFRLM 348 (377)
T ss_dssp HCEEEHHHHHHHHHHHHHHHHTTSCCSSTTSCH--HHHHHHHHT---TCCCC---------------CCTTCCHHHHHHH
T ss_pred cCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCH--HHHHHHHHc---CCCCC---------------CCCCCCHHHHHHH
Confidence 3456778999999999999999 8888643211 111122211 11000 0112334477889
Q ss_pred hhcCCCCccCchhHHHHHHHHHHHHHH
Q 011044 462 MECTVESPIRESTQRKLLQDSQKLETR 488 (495)
Q Consensus 462 ~~C~~~~p~~Rp~m~~v~~~l~~i~~~ 488 (495)
..|.+.+|.+||++.++++.|+.++++
T Consensus 349 ~~cl~~dP~~Rps~~~i~~~L~~i~~~ 375 (377)
T 3cbl_A 349 EQCWAYEPGQRPSFSTIYQELQSIRKR 375 (377)
T ss_dssp HHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHHcCCCchhCcCHHHHHHHHHHHHhh
Confidence 999999999999999999999999865
No 180
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}
Probab=97.95 E-value=1.7e-06 Score=83.72 Aligned_cols=96 Identities=7% Similarity=-0.066 Sum_probs=62.0
Q ss_pred CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044 383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM 462 (495)
Q Consensus 383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~ 462 (495)
....+.++||||||+++.|++||+.|..........+..+... +......+.+.... .......+.++..
T Consensus 242 ~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---------~~~~~~~l~~li~ 311 (352)
T 2jii_A 242 GCGPSRRSDLQSLGYCMLKWLYGFLPWTNCLPNTEDIMKQKQK-FVDKPGPFVGPCGH---------WIRPSETLQKYLK 311 (352)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTCHHHHHHHHHH-HHHSCCCEECTTSC---------EECCCHHHHHHHH
T ss_pred cCCCCchhhHHHHHHHHHHHHhCCCCcccCCcCHHHHHHHHHh-ccCChhhhhhhccc---------cCCCcHHHHHHHH
Confidence 3456778999999999999999999976543222222222222 22222222221110 0011234778889
Q ss_pred hcCCCCccCchhHHHHHHHHHHHHHH
Q 011044 463 ECTVESPIRESTQRKLLQDSQKLETR 488 (495)
Q Consensus 463 ~C~~~~p~~Rp~m~~v~~~l~~i~~~ 488 (495)
.|...+|.+||++.++++.|+.+..+
T Consensus 312 ~~l~~dp~~Rps~~~l~~~L~~~~~~ 337 (352)
T 2jii_A 312 VVMALTYEEKPPYAMLRNNLEALLQD 337 (352)
T ss_dssp HHHTCCTTCCCCHHHHHHHHHHHHHH
T ss_pred HHHhCChhhCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999988654
No 181
>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...
Probab=97.95 E-value=1.8e-06 Score=82.66 Aligned_cols=85 Identities=16% Similarity=0.302 Sum_probs=58.6
Q ss_pred CccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044 383 EGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA 461 (495)
Q Consensus 383 ~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~ 461 (495)
....+.++||||||+++.|++| |+.|.+..-. ..+...+....... ....+...+.++.
T Consensus 193 ~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~--~~~~~~~~~~~~~~------------------~~~~~~~~~~~li 252 (327)
T 3poz_A 193 HRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPA--SEISSILEKGERLP------------------QPPICTIDVYMIM 252 (327)
T ss_dssp HCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCG--GGHHHHHHTTCCCC------------------CCTTBCHHHHHHH
T ss_pred cCCCCchhhhhhhHHHHHHHHhcCCCCccCCCH--HHHHHHHHcCCCCC------------------CCccCCHHHHHHH
Confidence 3456778999999999999999 9999754221 22333332211100 0112234477899
Q ss_pred hhcCCCCccCchhHHHHHHHHHHHHH
Q 011044 462 MECTVESPIRESTQRKLLQDSQKLET 487 (495)
Q Consensus 462 ~~C~~~~p~~Rp~m~~v~~~l~~i~~ 487 (495)
..|.+.+|.+||+|.++++.|+.+..
T Consensus 253 ~~~l~~~p~~Rps~~ell~~l~~~~~ 278 (327)
T 3poz_A 253 VKCWMIDADSRPKFRELIIEFSKMAR 278 (327)
T ss_dssp HHHTCSCGGGSCCHHHHHHHHHHHHT
T ss_pred HHHcCCChhhCCCHHHHHHHHHHHHh
Confidence 99999999999999999999988753
No 182
>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}
Probab=97.94 E-value=1.5e-06 Score=82.43 Aligned_cols=86 Identities=15% Similarity=0.306 Sum_probs=59.6
Q ss_pred CCccccCCCcceeehhhhhhcccCCCCCccccCCC----CCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHH
Q 011044 382 REGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGE----MTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFV 457 (495)
Q Consensus 382 ~~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~----~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~ 457 (495)
.....+.++||||||+++.|+++|+.|........ .....+.....+. .+...+
T Consensus 195 ~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~l 252 (310)
T 3s95_A 195 NGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFGLNVRGFLDRYCPP----------------------NCPPSF 252 (310)
T ss_dssp TTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCTTSSBCHHHHHHHTCCT----------------------TCCTTH
T ss_pred cCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHHHHhhhhhccccccCCC----------------------CCCHHH
Confidence 34456778999999999999999998865432211 2222222211110 112236
Q ss_pred HHHHhhcCCCCccCchhHHHHHHHHHHHHHHH
Q 011044 458 FNLAMECTVESPIRESTQRKLLQDSQKLETRC 489 (495)
Q Consensus 458 ~~~~~~C~~~~p~~Rp~m~~v~~~l~~i~~~~ 489 (495)
.++...|.+.+|.+||++.++++.|+.++...
T Consensus 253 ~~li~~~l~~dP~~Rps~~~l~~~L~~l~~~~ 284 (310)
T 3s95_A 253 FPITVRCCDLDPEKRPSFVKLEHWLETLRMHL 284 (310)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCChhhCcCHHHHHHHHHHHHHhc
Confidence 78899999999999999999999999987653
No 183
>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A
Probab=97.93 E-value=1.9e-06 Score=80.97 Aligned_cols=91 Identities=15% Similarity=0.027 Sum_probs=60.1
Q ss_pred CccccCCCcceeehhhhhhcccCCCCCccccCC-C-CCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHH
Q 011044 383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNG-E-MTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNL 460 (495)
Q Consensus 383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~-~-~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~ 460 (495)
....+.++||||||+++.|++||+.|....-.. . ..+....+......... + ...+...+.++
T Consensus 189 ~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~-----~----------~~~~~~~l~~l 253 (296)
T 3uzp_A 189 GIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEV-----L----------CKGYPSEFATY 253 (296)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHSCHHH-----H----------TTTSCHHHHHH
T ss_pred CCCCCcchhhHHHHHHHHHHHhCCCCCCCcCchhhhhhhhhhcccccCCchHH-----H----------HhhCCHHHHHH
Confidence 445677899999999999999999997643211 1 12222222222111000 0 00122347788
Q ss_pred HhhcCCCCccCchhHHHHHHHHHHHHHH
Q 011044 461 AMECTVESPIRESTQRKLLQDSQKLETR 488 (495)
Q Consensus 461 ~~~C~~~~p~~Rp~m~~v~~~l~~i~~~ 488 (495)
...|.+.+|.+||++.++++.|+.+..+
T Consensus 254 i~~~l~~dp~~Rps~~~l~~~l~~~~~~ 281 (296)
T 3uzp_A 254 LNFCRSLRFDDKPDYSYLRQLFRNLFHR 281 (296)
T ss_dssp HHHHHTSCTTCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcCcCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999988654
No 184
>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*
Probab=97.92 E-value=2.5e-06 Score=78.91 Aligned_cols=81 Identities=14% Similarity=0.227 Sum_probs=54.8
Q ss_pred CCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhcCCC
Q 011044 388 TNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECTVE 467 (495)
Q Consensus 388 ~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~~ 467 (495)
.++||||||+++.|++||+.|... .+.............. +.+. ..+...+.++...|...
T Consensus 190 ~~~Di~slG~il~el~~g~~p~~~-----~~~~~~~~~~~~~~~~----~~~~----------~~~~~~~~~li~~~l~~ 250 (271)
T 3kmu_A 190 RSADMWSFAVLLWELVTREVPFAD-----LSNMEIGMKVALEGLR----PTIP----------PGISPHVSKLMKICMNE 250 (271)
T ss_dssp HHHHHHHHHHHHHHHHHCSCTTTT-----SCHHHHHHHHHHSCCC----CCCC----------TTCCHHHHHHHHHHTCS
T ss_pred chhhHHHHHHHHHHHHhCCCCccc-----cChHHHHHHHHhcCCC----CCCC----------CCCCHHHHHHHHHHcCC
Confidence 369999999999999999999643 2222222222211110 0010 01123377888899999
Q ss_pred CccCchhHHHHHHHHHHHHH
Q 011044 468 SPIRESTQRKLLQDSQKLET 487 (495)
Q Consensus 468 ~p~~Rp~m~~v~~~l~~i~~ 487 (495)
+|.+||++.++++.|+.+++
T Consensus 251 ~p~~Rps~~~il~~L~~l~~ 270 (271)
T 3kmu_A 251 DPAKRPKFDMIVPILEKMQD 270 (271)
T ss_dssp SGGGSCCHHHHHHHHHHHCC
T ss_pred ChhhCcCHHHHHHHHHHhhc
Confidence 99999999999999998764
No 185
>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...
Probab=97.92 E-value=1.4e-06 Score=81.93 Aligned_cols=99 Identities=13% Similarity=0.270 Sum_probs=58.7
Q ss_pred ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeecccccc--ccccccchhhHHHHHHHHH
Q 011044 384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSW--KDKHFMTKEQCMSFVFNLA 461 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~--~~~~~~~~~~~~~~~~~~~ 461 (495)
...+.++||||||+++.|++||+.|..... ..+.+..............+... ..........+...+.++.
T Consensus 192 ~~~~~~~Di~slG~~l~~l~~g~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li 265 (295)
T 3ugc_A 192 SKFSVASDVWSFGVVLYELFTYIEKSKSPP------AEFMRMIGNDKQGQMIVFHLIELLKNNGRLPRPDGCPDEIYMIM 265 (295)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTCTTCSHH------HHHHHHHCTTCCTHHHHHHHHHHHHTTCCCCCCTTCCHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHhcccccCCCh------HHHHhhhcCccccchhHHHHHHHHhccCcCCCCcCcCHHHHHHH
Confidence 345678999999999999999998864321 11111111110000000000000 0000001113345588899
Q ss_pred hhcCCCCccCchhHHHHHHHHHHHHHH
Q 011044 462 MECTVESPIRESTQRKLLQDSQKLETR 488 (495)
Q Consensus 462 ~~C~~~~p~~Rp~m~~v~~~l~~i~~~ 488 (495)
..|...+|.+||++.|++++|+.++.+
T Consensus 266 ~~~l~~dp~~Rps~~el~~~L~~l~~~ 292 (295)
T 3ugc_A 266 TECWNNNVNQRPSFRDLALRVDQIRDN 292 (295)
T ss_dssp HHHSCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred HHHcCCChhhCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999998764
No 186
>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*
Probab=97.89 E-value=5.6e-06 Score=78.40 Aligned_cols=89 Identities=12% Similarity=0.205 Sum_probs=59.3
Q ss_pred CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044 383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM 462 (495)
Q Consensus 383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~ 462 (495)
....+.++||||||+++.|++||+.|... .......+.+............ ......+.++..
T Consensus 210 ~~~~~~~~Dv~slG~il~~l~~g~~p~~~---~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~l~~li~ 272 (310)
T 2wqm_A 210 ENGYNFKSDIWSLGCLLYEMAALQSPFYG---DKMNLYSLCKKIEQCDYPPLPS--------------DHYSEELRQLVN 272 (310)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHSSCTTC------CCHHHHHHHHHTTCSCCCCT--------------TTSCHHHHHHHH
T ss_pred CCCCCchhhHHHHHHHHHHHHhCCCCCcc---cchhHHHHHHHhhcccCCCCcc--------------cccCHHHHHHHH
Confidence 34466789999999999999999999642 2233334433322221110000 011234778899
Q ss_pred hcCCCCccCchhHHHHHHHHHHHHHH
Q 011044 463 ECTVESPIRESTQRKLLQDSQKLETR 488 (495)
Q Consensus 463 ~C~~~~p~~Rp~m~~v~~~l~~i~~~ 488 (495)
.|...+|.+||++.+|++.++.++..
T Consensus 273 ~~l~~dp~~Rps~~~il~~l~~l~~~ 298 (310)
T 2wqm_A 273 MCINPDPEKRPDVTYVYDVAKRMHAC 298 (310)
T ss_dssp HHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHcCCChhhCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999988743
No 187
>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...
Probab=97.88 E-value=1.8e-06 Score=80.96 Aligned_cols=88 Identities=20% Similarity=0.335 Sum_probs=57.6
Q ss_pred ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044 384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME 463 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~ 463 (495)
...+.++||||+|+++.|++||+.|.... .+.....+....... .+.+.. ....+...+.++...
T Consensus 200 ~~~~~~~Di~slG~il~el~~g~~p~~~~----~~~~~~~~~~~~~~~----~~~~~~-------~~~~~~~~l~~li~~ 264 (289)
T 3og7_A 200 NPYSFQSDVYAFGIVLYELMTGQLPYSNI----NNRDQIIEMVGRGSL----SPDLSK-------VRSNCPKRMKRLMAE 264 (289)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHSSCTTSSC----CCHHHHHHHHHHTSC----CCCTTS-------SCTTSCHHHHHHHHH
T ss_pred CCCCcccchHHHHHHHHHHHHCCCCcccc----chHHHHHHHhccccc----Ccchhh-------ccccCCHHHHHHHHH
Confidence 34566899999999999999999996532 122222222111111 000000 011233457889999
Q ss_pred cCCCCccCchhHHHHHHHHHHHH
Q 011044 464 CTVESPIRESTQRKLLQDSQKLE 486 (495)
Q Consensus 464 C~~~~p~~Rp~m~~v~~~l~~i~ 486 (495)
|...+|.+||++.+++++|+++.
T Consensus 265 ~l~~~p~~Rps~~ell~~L~~l~ 287 (289)
T 3og7_A 265 CLKKKRDERPSFPRILAEIEELA 287 (289)
T ss_dssp HTCSSGGGSCCHHHHHHHHHHTT
T ss_pred HccCChhhCCCHHHHHHHHHHHh
Confidence 99999999999999999999875
No 188
>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*
Probab=97.88 E-value=6.4e-06 Score=78.08 Aligned_cols=88 Identities=15% Similarity=0.270 Sum_probs=57.6
Q ss_pred CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHh-CCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044 383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLL-SISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA 461 (495)
Q Consensus 383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~-~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~ 461 (495)
....+.++||||||+++.|++||+.|... .+-.+.+.... ...... + ...+...+.++.
T Consensus 213 ~~~~~~~~DiwslG~il~elltg~~Pf~~-----~~~~~~~~~~~~~~~~~~-----~----------~~~~~~~l~~li 272 (309)
T 3p86_A 213 DEPSNEKSDVYSFGVILWELATLQQPWGN-----LNPAQVVAAVGFKCKRLE-----I----------PRNLNPQVAAII 272 (309)
T ss_dssp TCCCCTTHHHHHHHHHHHHHHHCCCTTTT-----SCHHHHHHHHHHSCCCCC-----C----------CTTSCHHHHHHH
T ss_pred CCCCCchhhHHHHHHHHHHHHhCCCCCCC-----CCHHHHHHHHHhcCCCCC-----C----------CccCCHHHHHHH
Confidence 34457789999999999999999999643 22222222211 111110 0 001123367889
Q ss_pred hhcCCCCccCchhHHHHHHHHHHHHHHHH
Q 011044 462 MECTVESPIRESTQRKLLQDSQKLETRCL 490 (495)
Q Consensus 462 ~~C~~~~p~~Rp~m~~v~~~l~~i~~~~~ 490 (495)
..|...+|.+||++.++++.|+.+.+...
T Consensus 273 ~~~l~~dP~~Rps~~~ll~~L~~~~~~~~ 301 (309)
T 3p86_A 273 EGCWTNEPWKRPSFATIMDLLRPLIKSAV 301 (309)
T ss_dssp HHHTCSSGGGSCCHHHHHHHHHHHHC---
T ss_pred HHHccCChhhCcCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999998765443
No 189
>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A
Probab=97.87 E-value=3.3e-06 Score=79.23 Aligned_cols=92 Identities=15% Similarity=0.013 Sum_probs=60.1
Q ss_pred CccccCCCcceeehhhhhhcccCCCCCccccCCC--CCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHH
Q 011044 383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGE--MTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNL 460 (495)
Q Consensus 383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~--~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~ 460 (495)
....+.++||||||+++.|++||+.|........ ..+........+..... + .......+.++
T Consensus 189 ~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~-----~----------~~~~~~~l~~l 253 (296)
T 4hgt_A 189 GIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEV-----L----------CKGYPSEFATY 253 (296)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHSCHHH-----H----------TTTSCHHHHHH
T ss_pred CCCCCchhHHHHHHHHHHHHhcCCCCCcccchhhhhhhhhhhhcccccchhhh-----h----------hccCCHHHHHH
Confidence 3446678999999999999999999976432211 11122222111111000 0 00112347788
Q ss_pred HhhcCCCCccCchhHHHHHHHHHHHHHHH
Q 011044 461 AMECTVESPIRESTQRKLLQDSQKLETRC 489 (495)
Q Consensus 461 ~~~C~~~~p~~Rp~m~~v~~~l~~i~~~~ 489 (495)
...|.+.+|.+||++.++++.|+.+..+.
T Consensus 254 i~~~l~~~p~~Rpt~~~l~~~l~~~~~~~ 282 (296)
T 4hgt_A 254 LNFCRSLRFDDKPDYSYLRQLFRNLFHRQ 282 (296)
T ss_dssp HHHHHTSCTTCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999887653
No 190
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=97.86 E-value=3.6e-06 Score=80.16 Aligned_cols=87 Identities=14% Similarity=0.238 Sum_probs=56.2
Q ss_pred CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044 383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM 462 (495)
Q Consensus 383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~ 462 (495)
....+.++||||+||++.||+||+.|........+ +.+.+....+ ..+ + ...+...+.++..
T Consensus 230 ~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~-~~~i~~~~~~--~~~-----~----------~~~~s~~~~~li~ 291 (336)
T 4g3f_A 230 GKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPL-CLKIASEPPP--IRE-----I----------PPSCAPLTAQAIQ 291 (336)
T ss_dssp TCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCC-HHHHHHSCCG--GGG-----S----------CTTSCHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHH-HHHHHcCCCC--chh-----c----------CccCCHHHHHHHH
Confidence 34456789999999999999999999754332221 1111111000 000 0 0112233667788
Q ss_pred hcCCCCccCchhHHHHHHHHHHHHH
Q 011044 463 ECTVESPIRESTQRKLLQDSQKLET 487 (495)
Q Consensus 463 ~C~~~~p~~Rp~m~~v~~~l~~i~~ 487 (495)
.|.+.+|.+||++.|+++.+..+..
T Consensus 292 ~~L~~dP~~R~sa~el~~~l~~~l~ 316 (336)
T 4g3f_A 292 EGLRKEPVHRASAMELRRKVGKALQ 316 (336)
T ss_dssp HHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHccCCHhHCcCHHHHHHHHHHHHh
Confidence 9999999999999999988876543
No 191
>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}
Probab=97.83 E-value=4.9e-06 Score=79.06 Aligned_cols=86 Identities=14% Similarity=0.129 Sum_probs=55.5
Q ss_pred cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhc
Q 011044 385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMEC 464 (495)
Q Consensus 385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C 464 (495)
..+.++||||||+++.|++||+.|... .+....+............... +...+.++...|
T Consensus 219 ~~~~~~Di~slG~il~el~~g~~p~~~-----~~~~~~~~~~~~~~~~~~~~~~--------------~~~~l~~li~~~ 279 (319)
T 2y4i_B 219 PFSKHSDVFALGTIWYELHAREWPFKT-----QPAEAIIWQMGTGMKPNLSQIG--------------MGKEISDILLFC 279 (319)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSSCSSSS-----CCHHHHHHHHHTTCCCCCCCSS--------------CCTTHHHHHHHH
T ss_pred CCCchhhHHHHHHHHHHHHhCCCCCCC-----CCHHHHHHHhccCCCCCCCcCC--------------CCHHHHHHHHHH
Confidence 456789999999999999999999643 2222222222221111110000 111267889999
Q ss_pred CCCCccCchhHHHHHHHHHHHHHHH
Q 011044 465 TVESPIRESTQRKLLQDSQKLETRC 489 (495)
Q Consensus 465 ~~~~p~~Rp~m~~v~~~l~~i~~~~ 489 (495)
...+|.+||++.+++++|+.++.+.
T Consensus 280 l~~~p~~Rpt~~~l~~~l~~l~~~~ 304 (319)
T 2y4i_B 280 WAFEQEERPTFTKLMDMLEKLPKRN 304 (319)
T ss_dssp HCSSTTTSCCHHHHHHHHTTC----
T ss_pred hcCChhhCcCHHHHHHHHHHHHHhh
Confidence 9999999999999999999887653
No 192
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Probab=97.82 E-value=2.3e-06 Score=83.54 Aligned_cols=85 Identities=13% Similarity=0.315 Sum_probs=57.3
Q ss_pred ccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044 384 GRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM 462 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~ 462 (495)
...+.++||||||+++.|+++ |+.|.... +-....+........ + ....+...+.++..
T Consensus 225 ~~~~~~~Dv~SlG~il~ellt~g~~P~~~~-----~~~~~~~~i~~~~~~----~-----------~~~~~~~~l~~li~ 284 (373)
T 2qol_A 225 RKFTSASDVWSYGIVLWEVMSYGERPYWEM-----SNQDVIKAVDEGYRL----P-----------PPMDCPAALYQLML 284 (373)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTC-CTTTTC-----CHHHHHHHHHTTEEC----C-----------CCTTCBHHHHHHHH
T ss_pred CCcCchhcHHHHHHHHHHHHhCCCCCCCCC-----CHHHHHHHHHcCCCC----C-----------CCccccHHHHHHHH
Confidence 456778999999999999998 99986432 222222222111000 0 01123345788999
Q ss_pred hcCCCCccCchhHHHHHHHHHHHHHH
Q 011044 463 ECTVESPIRESTQRKLLQDSQKLETR 488 (495)
Q Consensus 463 ~C~~~~p~~Rp~m~~v~~~l~~i~~~ 488 (495)
.|.+.+|.+||+|.+|+++|+.+...
T Consensus 285 ~cl~~dp~~RPs~~~i~~~L~~~~~~ 310 (373)
T 2qol_A 285 DCWQKDRNNRPKFEQIVSILDKLIRN 310 (373)
T ss_dssp HHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred HHhCcChhhCcCHHHHHHHHHHHHhC
Confidence 99999999999999999999988643
No 193
>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}
Probab=97.82 E-value=3.1e-06 Score=80.42 Aligned_cols=84 Identities=18% Similarity=0.290 Sum_probs=58.2
Q ss_pred ccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhcC
Q 011044 386 VSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECT 465 (495)
Q Consensus 386 ~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C~ 465 (495)
.+.++||||||+++.|+++|+.|.+.....+..+...+....... . .......+.++...|.
T Consensus 223 ~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~-------~-----------~~~~~~~l~~li~~~l 284 (317)
T 2buj_A 223 IDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDSVALAVQNQLSIP-------Q-----------SPRHSSALWQLLNSMM 284 (317)
T ss_dssp ECTHHHHHHHHHHHHHHHHSSCTTHHHHHTTSCHHHHHHCC--CC-------C-----------CTTSCHHHHHHHHHHT
T ss_pred CCchhhHHHHHHHHHHHHhCCCChhhhhcccchhhHHhhccCCCC-------c-----------cccCCHHHHHHHHHHh
Confidence 567899999999999999999997654433333333222211000 0 0011234778899999
Q ss_pred CCCccCchhHHHHHHHHHHHHH
Q 011044 466 VESPIRESTQRKLLQDSQKLET 487 (495)
Q Consensus 466 ~~~p~~Rp~m~~v~~~l~~i~~ 487 (495)
..+|.+||++.++++.|+.++.
T Consensus 285 ~~dp~~Rps~~~ll~~L~~~~~ 306 (317)
T 2buj_A 285 TVDPHQRPHIPLLLSQLEALQP 306 (317)
T ss_dssp CSSGGGSCCHHHHHHHHHHTCC
T ss_pred hcChhhCCCHHHHHHHhhhcCC
Confidence 9999999999999999988753
No 194
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A
Probab=97.82 E-value=5.7e-06 Score=82.89 Aligned_cols=86 Identities=21% Similarity=0.379 Sum_probs=60.1
Q ss_pred CccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044 383 EGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA 461 (495)
Q Consensus 383 ~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~ 461 (495)
....+.++||||||+++.|++| |+.|....-. ..+...+..... .. ....+...+.++.
T Consensus 360 ~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~--~~~~~~i~~~~~---~~---------------~p~~~~~~l~~li 419 (450)
T 1k9a_A 360 EKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPL--KDVVPRVEKGYK---MD---------------APDGCPPAVYDVM 419 (450)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSCT--TTHHHHHHTTCC---CC---------------CCTTCCHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCH--HHHHHHHHcCCC---CC---------------CCCcCCHHHHHHH
Confidence 4556788999999999999999 9988653221 222232222111 00 0112334577888
Q ss_pred hhcCCCCccCchhHHHHHHHHHHHHHH
Q 011044 462 MECTVESPIRESTQRKLLQDSQKLETR 488 (495)
Q Consensus 462 ~~C~~~~p~~Rp~m~~v~~~l~~i~~~ 488 (495)
..|...+|.+||++.++++.|+.++..
T Consensus 420 ~~cl~~dp~~Rpt~~~l~~~L~~i~~~ 446 (450)
T 1k9a_A 420 KNCWHLDAATRPTFLQLREQLEHIRTH 446 (450)
T ss_dssp HHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred HHHcCCChhHCcCHHHHHHHHHHHHHh
Confidence 999999999999999999999998764
No 195
>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*
Probab=97.81 E-value=3.5e-06 Score=78.84 Aligned_cols=85 Identities=18% Similarity=0.358 Sum_probs=56.1
Q ss_pred ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044 384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME 463 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~ 463 (495)
...+.++||||+|+++.|+++|+.|.+..-.+. ..+.......... +.+ ...+...+.++...
T Consensus 203 ~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~---~~~~~~~~~~~~~----~~~----------~~~~~~~l~~li~~ 265 (287)
T 4f0f_A 203 ESYTEKADTYSFAMILYTILTGEGPFDEYSYGK---IKFINMIREEGLR----PTI----------PEDCPPRLRNVIEL 265 (287)
T ss_dssp CEECHHHHHHHHHHHHHHHHHSSCTTTTCCCCH---HHHHHHHHHSCCC----CCC----------CTTSCHHHHHHHHH
T ss_pred CCcCchhhHHHHHHHHHHHHcCCCCCccccccH---HHHHHHHhccCCC----CCC----------CcccCHHHHHHHHH
Confidence 345678999999999999999999975432221 1222221111110 001 01123347788999
Q ss_pred cCCCCccCchhHHHHHHHHHHH
Q 011044 464 CTVESPIRESTQRKLLQDSQKL 485 (495)
Q Consensus 464 C~~~~p~~Rp~m~~v~~~l~~i 485 (495)
|.+.+|.+||++.|+++.|+++
T Consensus 266 ~l~~dp~~Rps~~~ll~~L~~l 287 (287)
T 4f0f_A 266 CWSGDPKKRPHFSYIVKELSEL 287 (287)
T ss_dssp HTCSSGGGSCCHHHHHHHHHTC
T ss_pred HhcCChhhCcCHHHHHHHHHhC
Confidence 9999999999999999998753
No 196
>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*
Probab=97.81 E-value=2.9e-06 Score=79.81 Aligned_cols=93 Identities=11% Similarity=-0.055 Sum_probs=59.2
Q ss_pred CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044 383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM 462 (495)
Q Consensus 383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~ 462 (495)
....+.++||||||+++.|++||+.|...... ................ ...+.+ ...+...+.++..
T Consensus 192 ~~~~~~~~Di~slG~il~el~~g~~pf~~~~~--~~~~~~~~~~~~~~~~-~~~~~~----------~~~~~~~l~~li~ 258 (298)
T 1csn_A 192 GREQSRRDDLEALGHVFMYFLRGSLPWQGLKA--ATNKQKYERIGEKKQS-TPLREL----------CAGFPEEFYKYMH 258 (298)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCS--CCHHHHHHHHHHHHHH-SCHHHH----------TTTSCHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCcchhhc--cccHHHHHHHHhhccC-ccHHHH----------HhhCcHHHHHHHH
Confidence 34467789999999999999999999754221 1111111111100000 000000 0012334778899
Q ss_pred hcCCCCccCchhHHHHHHHHHHHHHH
Q 011044 463 ECTVESPIRESTQRKLLQDSQKLETR 488 (495)
Q Consensus 463 ~C~~~~p~~Rp~m~~v~~~l~~i~~~ 488 (495)
.|.+.+|.+||++.++++.|+.+..+
T Consensus 259 ~~l~~dp~~RP~~~~l~~~l~~~~~~ 284 (298)
T 1csn_A 259 YARNLAFDATPDYDYLQGLFSKVLER 284 (298)
T ss_dssp HHHHCCTTCCCCHHHHHHHHHHHHHH
T ss_pred HHhcCCcccCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999988765
No 197
>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*
Probab=97.78 E-value=5.6e-07 Score=85.81 Aligned_cols=95 Identities=13% Similarity=0.246 Sum_probs=59.3
Q ss_pred ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHH-hCCC------cceeeeccccccccccccchhhHHHH
Q 011044 384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDL-LSIS------VMEVVDANLLSWKDKHFMTKEQCMSF 456 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~-~~~~------~~~v~d~~l~~~~~~~~~~~~~~~~~ 456 (495)
...+.++||||+|+++.|++||+.|...... .+.... .... ..+.++..... .....+...
T Consensus 212 ~~~~~~~Di~slG~il~~ll~g~~p~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 279 (318)
T 3lxp_A 212 YKFYYASDVWSFGVTLYELLTHCDSSQSPPT------KFLELIGIAQGQMTVLRLTELLERGERL------PRPDKCPAE 279 (318)
T ss_dssp CEEEHHHHHHHHHHHHHHHHTTTCGGGSHHH------HHHHHHCSCCHHHHHHHHHHHHHTTCCC------CCCTTCCHH
T ss_pred CCCCcHHHHHHHHHHHHHHHhCCCcccccch------hhhhhhcccccchhHHHHHHHHhcccCC------CCCccccHH
Confidence 3456789999999999999999998653211 110000 0000 00000000000 001123345
Q ss_pred HHHHHhhcCCCCccCchhHHHHHHHHHHHHHHHH
Q 011044 457 VFNLAMECTVESPIRESTQRKLLQDSQKLETRCL 490 (495)
Q Consensus 457 ~~~~~~~C~~~~p~~Rp~m~~v~~~l~~i~~~~~ 490 (495)
+.++...|.+.+|.+||++.|+++.|+.+.+++-
T Consensus 280 l~~li~~~l~~dP~~Rps~~ell~~L~~l~~~~~ 313 (318)
T 3lxp_A 280 VYHLMKNCWETEASFRPTFENLIPILKTVHEKYQ 313 (318)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcccCcCHHHHHHHHHHHHHhhc
Confidence 7888999999999999999999999999987764
No 198
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}
Probab=97.77 E-value=3.6e-06 Score=80.43 Aligned_cols=94 Identities=15% Similarity=0.269 Sum_probs=58.8
Q ss_pred ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCc--------ceeeeccccccccccccchhhHHH
Q 011044 384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISV--------MEVVDANLLSWKDKHFMTKEQCMS 455 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~--------~~v~d~~l~~~~~~~~~~~~~~~~ 455 (495)
...+.++||||+|+++.|++||+.|..... ..+.+..-.... .+.+...... .....+..
T Consensus 223 ~~~~~~~Di~slG~il~el~tg~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 290 (326)
T 2w1i_A 223 SKFSVASDVWSFGVVLYELFTYIEKSKSPP------AEFMRMIGNDKQGQMIVFHLIELLKNNGRL------PRPDGCPD 290 (326)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHTTCGGGSHH------HHHHHHHCTTCCTHHHHHHHHHHHHTTCCC------CCCTTCCH
T ss_pred CCCCchhhHHHHHHHHHHHHhcCCCCCCCH------HHHHHhhccccchhhhHHHHHHHhhcCCCC------CCCCcccH
Confidence 345678999999999999999988854211 111111100000 0000000000 00112334
Q ss_pred HHHHHHhhcCCCCccCchhHHHHHHHHHHHHHHH
Q 011044 456 FVFNLAMECTVESPIRESTQRKLLQDSQKLETRC 489 (495)
Q Consensus 456 ~~~~~~~~C~~~~p~~Rp~m~~v~~~l~~i~~~~ 489 (495)
.+.++...|.+.+|.+||++.|+++.|+.++.+.
T Consensus 291 ~l~~li~~cl~~dP~~Rps~~el~~~L~~l~~~l 324 (326)
T 2w1i_A 291 EIYMIMTECWNNNVNQRPSFRDLALRVDQIRDQM 324 (326)
T ss_dssp HHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHh
Confidence 5788999999999999999999999999998764
No 199
>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0
Probab=97.77 E-value=9.3e-06 Score=75.14 Aligned_cols=83 Identities=14% Similarity=0.262 Sum_probs=54.2
Q ss_pred ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044 384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME 463 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~ 463 (495)
...+.++||||+|+++.|++||+.|.... +-............. ... ...+...+.++...
T Consensus 189 ~~~~~~~Di~slG~~l~~l~~g~~p~~~~-----~~~~~~~~~~~~~~~----~~~----------~~~~~~~~~~li~~ 249 (271)
T 3dtc_A 189 SMFSKGSDVWSYGVLLWELLTGEVPFRGI-----DGLAVAYGVAMNKLA----LPI----------PSTCPEPFAKLMED 249 (271)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHCCCTTTTS-----CHHHHHHHHHTSCCC----CCC----------CTTCCHHHHHHHHH
T ss_pred CCCCchhhHHHHHHHHHHHHhCCCCCCCC-----CHHHHHHhhhcCCCC----CCC----------CcccCHHHHHHHHH
Confidence 34567899999999999999999996431 111111111111100 000 01122347788999
Q ss_pred cCCCCccCchhHHHHHHHHHHH
Q 011044 464 CTVESPIRESTQRKLLQDSQKL 485 (495)
Q Consensus 464 C~~~~p~~Rp~m~~v~~~l~~i 485 (495)
|...+|.+||++.|+++.|+.|
T Consensus 250 ~l~~~p~~Rps~~e~l~~L~~l 271 (271)
T 3dtc_A 250 CWNPDPHSRPSFTNILDQLTTI 271 (271)
T ss_dssp HTCSSGGGSCCHHHHHHHHHC-
T ss_pred HhcCCcccCcCHHHHHHHHhcC
Confidence 9999999999999999998754
No 200
>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7
Probab=97.74 E-value=9.7e-06 Score=76.15 Aligned_cols=88 Identities=18% Similarity=0.372 Sum_probs=59.1
Q ss_pred CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044 383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM 462 (495)
Q Consensus 383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~ 462 (495)
....+.++||||+|+++.|++||..|..... ....+..++........ ...+...+.++..
T Consensus 202 ~~~~~~~~Di~slG~il~~l~~g~~~~~~~~-~~~~~~~~~~~~~~~~~------------------~~~~~~~l~~li~ 262 (298)
T 3pls_A 202 TYRFTTKSDVWSFGVLLWELLTRGAPPYRHI-DPFDLTHFLAQGRRLPQ------------------PEYCPDSLYQVMQ 262 (298)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHTSCCTTTTS-CGGGHHHHHHTTCCCCC------------------CTTCCHHHHHHHH
T ss_pred cCCCChhhchhhHHHHHHHHhhCCCCCCccC-CHHHHHHHhhcCCCCCC------------------CccchHHHHHHHH
Confidence 4456678999999999999999777743211 12233333322211100 0011234778899
Q ss_pred hcCCCCccCchhHHHHHHHHHHHHHHH
Q 011044 463 ECTVESPIRESTQRKLLQDSQKLETRC 489 (495)
Q Consensus 463 ~C~~~~p~~Rp~m~~v~~~l~~i~~~~ 489 (495)
.|...+|.+||++.+++++|+++..+.
T Consensus 263 ~~l~~~p~~Rps~~~ll~~l~~~~~~l 289 (298)
T 3pls_A 263 QCWEADPAVRPTFRVLVGEVEQIVSAL 289 (298)
T ss_dssp HHTCSSGGGSCCHHHHHHHHHHHHHHC
T ss_pred HHccCChhhCcCHHHHHHHHHHHHHHH
Confidence 999999999999999999999987664
No 201
>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
Probab=97.74 E-value=1.6e-06 Score=83.74 Aligned_cols=93 Identities=9% Similarity=-0.001 Sum_probs=57.7
Q ss_pred ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044 384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME 463 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~ 463 (495)
...+.++||||||+++.|++||+.|.+........+ ...+............... ....+...+.++...
T Consensus 235 ~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~~li~~ 304 (345)
T 2v62_A 235 VALSRRSDVEILGYCMLRWLCGKLPWEQNLKDPVAV-QTAKTNLLDELPQSVLKWA---------PSGSSCCEIAQFLVC 304 (345)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHSSCTTGGGTTCHHHH-HHHHHHHHHTTTHHHHHHS---------CTTSCCHHHHHHHHH
T ss_pred CCCCchhhHHHHHHHHHHHHhCCCCccccccccHHH-HHHHHhhcccccHHHHhhc---------cccccHHHHHHHHHH
Confidence 346778999999999999999999975432221111 2222221111110000000 000122347788899
Q ss_pred cCCCCccCchhHHHHHHHHHHHH
Q 011044 464 CTVESPIRESTQRKLLQDSQKLE 486 (495)
Q Consensus 464 C~~~~p~~Rp~m~~v~~~l~~i~ 486 (495)
|...+|.+||++.++++.|+.+.
T Consensus 305 ~l~~dp~~Rps~~~l~~~L~~~~ 327 (345)
T 2v62_A 305 AHSLAYDEKPNYQALKKILNPHG 327 (345)
T ss_dssp HHTCCTTCCCCHHHHHHHHCTTC
T ss_pred HhhcCcccCCCHHHHHHHHhccC
Confidence 99999999999999999997653
No 202
>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*
Probab=97.73 E-value=8.8e-06 Score=78.75 Aligned_cols=86 Identities=14% Similarity=0.295 Sum_probs=56.3
Q ss_pred ccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044 384 GRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM 462 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~ 462 (495)
...+.++||||||+++.|++| |+.|....... ..+...++....... + ..+...+.++..
T Consensus 270 ~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~-~~~~~~~~~~~~~~~-----~-------------~~~~~~l~~li~ 330 (359)
T 3vhe_A 270 RVYTIQSDVWSFGVLLWEIFSLGASPYPGVKID-EEFCRRLKEGTRMRA-----P-------------DYTTPEMYQTML 330 (359)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCS-HHHHHHHHHTCCCCC-----C-------------TTCCHHHHHHHH
T ss_pred CCCCchhhhhhHHHHHHHHHhcCCCCCCccchh-HHHHHHHHcCCCCCC-----C-------------CCCCHHHHHHHH
Confidence 445678999999999999999 99986432111 111111111110000 0 011223677889
Q ss_pred hcCCCCccCchhHHHHHHHHHHHHHH
Q 011044 463 ECTVESPIRESTQRKLLQDSQKLETR 488 (495)
Q Consensus 463 ~C~~~~p~~Rp~m~~v~~~l~~i~~~ 488 (495)
.|.+.+|.+||++.|+++.|+.+...
T Consensus 331 ~~l~~dP~~Rps~~ell~~L~~~~~~ 356 (359)
T 3vhe_A 331 DCWHGEPSQRPTFSELVEHLGNLLQA 356 (359)
T ss_dssp HHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHccCChhhCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999987653
No 203
>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}
Probab=97.72 E-value=5.2e-06 Score=83.69 Aligned_cols=93 Identities=14% Similarity=0.069 Sum_probs=59.5
Q ss_pred CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044 383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM 462 (495)
Q Consensus 383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~ 462 (495)
....+.++|||||||++.|+++|+.|....... .....+............+ .+ ...+...+.++..
T Consensus 187 ~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~~--~~~~~~~~i~~~~~~~~~~-~l----------~~~~p~~l~~li~ 253 (483)
T 3sv0_A 187 GIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAG--TKKQKYEKISEKKVATSIE-AL----------CRGYPTEFASYFH 253 (483)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCS--SHHHHHHHHHHHHHHSCHH-HH----------HTTSCHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHhCCCCCccccch--hHHHHHHHHhhccccccHH-HH----------hcCCcHHHHHHHH
Confidence 345677899999999999999999997643221 2222221111111000000 00 0112345788999
Q ss_pred hcCCCCccCchhHHHHHHHHHHHHHH
Q 011044 463 ECTVESPIRESTQRKLLQDSQKLETR 488 (495)
Q Consensus 463 ~C~~~~p~~Rp~m~~v~~~l~~i~~~ 488 (495)
.|...+|.+||++.++++.|+.+..+
T Consensus 254 ~cl~~dP~~RPs~~el~~~L~~l~~~ 279 (483)
T 3sv0_A 254 YCRSLRFDDKPDYSYLKRLFRDLFIR 279 (483)
T ss_dssp HHHTCCTTCCCCHHHHHHHHHHHHHH
T ss_pred HHhcCChhhCcCHHHHHHHHHHHHHH
Confidence 99999999999999999999887543
No 204
>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}
Probab=97.72 E-value=1.1e-05 Score=77.28 Aligned_cols=97 Identities=11% Similarity=0.030 Sum_probs=58.4
Q ss_pred cccCCCcceeehhhhhhcccCCCCCccccCCC-------------CCHHHHHHHHhCCCcceeeeccccccccccccchh
Q 011044 385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGE-------------MTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKE 451 (495)
Q Consensus 385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~-------------~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~ 451 (495)
..+.++||||||+++.|++||+.|........ .....+ ........ ..+.+-.. .....
T Consensus 211 ~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~----~~~~~ 282 (336)
T 3g2f_A 211 SALKQVDMYALGLIYWEIFMRCTDLFPGESVPEYQMAFQTEVGNHPTFEDM-QVLVSREK---QRPKFPEA----WKENS 282 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTBGGGSTTSCCCCCCCTTHHHHCSSCCHHHH-HHHHTTSC---CCCCCCTT----CCCCS
T ss_pred ccccccchHHHHHHHHHHHhcCCcCCCccchhHHHHhhhcccCCCchHHHH-Hhhhcccc---cCCCCCcc----ccccc
Confidence 45568999999999999999987743211100 011111 11111000 00111000 00112
Q ss_pred hHHHHHHHHHhhcCCCCccCchhHHHHHHHHHHHHHHH
Q 011044 452 QCMSFVFNLAMECTVESPIRESTQRKLLQDSQKLETRC 489 (495)
Q Consensus 452 ~~~~~~~~~~~~C~~~~p~~Rp~m~~v~~~l~~i~~~~ 489 (495)
.+...+.++...|...+|.+||++.||++.|+.+...+
T Consensus 283 ~~~~~l~~li~~cl~~dP~~Rps~~e~l~~L~~ll~~~ 320 (336)
T 3g2f_A 283 LAVRSLKETIEDCWDQDAEARLTAQXAEERMAELMMIW 320 (336)
T ss_dssp HHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHCC
T ss_pred chHHHHHHHHHHHhcCChhhCcchHHHHHHHHHHHHHH
Confidence 34556889999999999999999999999999887544
No 205
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*
Probab=97.72 E-value=1.4e-05 Score=76.37 Aligned_cols=87 Identities=15% Similarity=0.286 Sum_probs=57.8
Q ss_pred ccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044 384 GRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM 462 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~ 462 (495)
...+.++||||||+++.|++| |+.|...... ...+...++...... .+. .+...+.++..
T Consensus 241 ~~~~~~~Di~slG~il~el~t~g~~p~~~~~~-~~~~~~~~~~~~~~~-----~~~-------------~~~~~l~~li~ 301 (333)
T 2i1m_A 241 CVYTVQSDVWSYGILLWEIFSLGLNPYPGILV-NSKFYKLVKDGYQMA-----QPA-------------FAPKNIYSIMQ 301 (333)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCS-SHHHHHHHHHTCCCC-----CCT-------------TCCHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCCCCCCcccch-hHHHHHHHhcCCCCC-----CCC-------------CCCHHHHHHHH
Confidence 345678999999999999999 8888643221 111222222211110 000 11234778899
Q ss_pred hcCCCCccCchhHHHHHHHHHHHHHHH
Q 011044 463 ECTVESPIRESTQRKLLQDSQKLETRC 489 (495)
Q Consensus 463 ~C~~~~p~~Rp~m~~v~~~l~~i~~~~ 489 (495)
.|.+.+|.+||++.|+++.|+.+....
T Consensus 302 ~~l~~~p~~Rps~~~l~~~L~~~~~~~ 328 (333)
T 2i1m_A 302 ACWALEPTHRPTFQQICSFLQEQAQED 328 (333)
T ss_dssp HHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred HHhccChhhCcCHHHHHHHHHHHHHhh
Confidence 999999999999999999999876543
No 206
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Probab=97.72 E-value=1.4e-05 Score=76.20 Aligned_cols=84 Identities=14% Similarity=0.279 Sum_probs=57.7
Q ss_pred ccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044 384 GRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM 462 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~ 462 (495)
...+.++||||||+++.|+++ |+.|.... .-...+.......... . ...+...+.++..
T Consensus 229 ~~~~~~~Di~slG~il~ell~~g~~p~~~~-----~~~~~~~~~~~~~~~~-----~----------~~~~~~~l~~li~ 288 (325)
T 3kul_A 229 RTFSSASDVWSFGVVMWEVLAYGERPYWNM-----TNRDVISSVEEGYRLP-----A----------PMGCPHALHQLML 288 (325)
T ss_dssp CEECHHHHHHHHHHHHHHHHTTSCCTTTTS-----CHHHHHHHHHTTCCCC-----C----------CTTCCHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHcCCCCCcccC-----CHHHHHHHHHcCCCCC-----C----------CCCcCHHHHHHHH
Confidence 446678999999999999999 99986432 2222222222211000 0 0122334778999
Q ss_pred hcCCCCccCchhHHHHHHHHHHHHH
Q 011044 463 ECTVESPIRESTQRKLLQDSQKLET 487 (495)
Q Consensus 463 ~C~~~~p~~Rp~m~~v~~~l~~i~~ 487 (495)
.|...+|.+||++.++++.|+.+..
T Consensus 289 ~~l~~dp~~Rps~~eil~~L~~l~~ 313 (325)
T 3kul_A 289 DCWHKDRAQRPRFSQIVSVLDALIR 313 (325)
T ss_dssp HHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHccCChhhCcCHHHHHHHHHHHHh
Confidence 9999999999999999999998764
No 207
>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*
Probab=97.71 E-value=1.3e-05 Score=74.15 Aligned_cols=85 Identities=24% Similarity=0.377 Sum_probs=57.0
Q ss_pred ccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044 384 GRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM 462 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~ 462 (495)
...+.++||||+|+++.|++| |+.|.+. .+-............ ...+.. ....+.++..
T Consensus 180 ~~~~~~~Di~slG~il~~l~~~g~~p~~~-----~~~~~~~~~~~~~~~--~~~~~~-------------~~~~l~~li~ 239 (268)
T 3sxs_A 180 FKYSSKSDVWAFGILMWEVFSLGKMPYDL-----YTNSEVVLKVSQGHR--LYRPHL-------------ASDTIYQIMY 239 (268)
T ss_dssp SEEETTHHHHHHHHHHHHHHTTTCCTTTT-----SCHHHHHHHHHTTCC--CCCCTT-------------SCHHHHHHHH
T ss_pred cCCchhhhhHHHHHHHHHHHcCCCCCccc-----cChHHHHHHHHcCCC--CCCCCc-------------ChHHHHHHHH
Confidence 346778999999999999999 8888643 122222222222110 001111 1123778899
Q ss_pred hcCCCCccCchhHHHHHHHHHHHHHH
Q 011044 463 ECTVESPIRESTQRKLLQDSQKLETR 488 (495)
Q Consensus 463 ~C~~~~p~~Rp~m~~v~~~l~~i~~~ 488 (495)
.|.+.+|.+||++.|+++.|+.++++
T Consensus 240 ~~l~~~p~~Rps~~~ll~~L~~l~~~ 265 (268)
T 3sxs_A 240 SCWHELPEKRPTFQQLLSSIEPLREK 265 (268)
T ss_dssp HTTCSSGGGSCCHHHHHHHHGGGCC-
T ss_pred HHcCCChhhCcCHHHHHHHHHHhhhc
Confidence 99999999999999999999887643
No 208
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}
Probab=97.71 E-value=1.2e-05 Score=78.66 Aligned_cols=85 Identities=18% Similarity=0.395 Sum_probs=58.8
Q ss_pred CccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044 383 EGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA 461 (495)
Q Consensus 383 ~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~ 461 (495)
....+.++||||||+++.|++| |+.|... .+...+++.......... ...+...+.++.
T Consensus 267 ~~~~~~~~DiwslG~il~ellt~g~~p~~~-----~~~~~~~~~~~~~~~~~~---------------~~~~~~~l~~li 326 (382)
T 3tt0_A 267 DRIYTHQSDVWSFGVLLWEIFTLGGSPYPG-----VPVEELFKLLKEGHRMDK---------------PSNCTNELYMMM 326 (382)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHTTSCCSSTT-----CCHHHHHHHHHTTCCCCC---------------CSSCCHHHHHHH
T ss_pred CCCCCchhHHHHHHHHHHHHHhCCCCCCCC-----CCHHHHHHHHHcCCCCCC---------------CccCCHHHHHHH
Confidence 3456778999999999999999 8888542 233333333322211110 001223477889
Q ss_pred hhcCCCCccCchhHHHHHHHHHHHHH
Q 011044 462 MECTVESPIRESTQRKLLQDSQKLET 487 (495)
Q Consensus 462 ~~C~~~~p~~Rp~m~~v~~~l~~i~~ 487 (495)
..|.+.+|.+||++.||++.|+.+..
T Consensus 327 ~~~l~~dP~~Rps~~ell~~L~~~~~ 352 (382)
T 3tt0_A 327 RDCWHAVPSQRPTFKQLVEDLDRIVA 352 (382)
T ss_dssp HHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHHcCCChhhCcCHHHHHHHHHHHHH
Confidence 99999999999999999999998764
No 209
>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=97.70 E-value=1.8e-05 Score=73.18 Aligned_cols=85 Identities=20% Similarity=0.391 Sum_probs=57.9
Q ss_pred ccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044 384 GRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM 462 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~ 462 (495)
...+.++||||+|+++.|++| |+.|.+. .+....+........ ...+. .....+.++..
T Consensus 182 ~~~~~~~Di~slG~~l~~ll~~g~~p~~~-----~~~~~~~~~~~~~~~--~~~~~-------------~~~~~~~~li~ 241 (269)
T 4hcu_A 182 SRYSSKSDVWSFGVLMWEVFSEGKIPYEN-----RSNSEVVEDISTGFR--LYKPR-------------LASTHVYQIMN 241 (269)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTSCCTTTT-----CCHHHHHHHHHTTCC--CCCCT-------------TSCHHHHHHHH
T ss_pred CCCCchhhhHHHHHHHHHHhcCCCCCCCC-----CCHHHHHHHHhcCcc--CCCCC-------------cCCHHHHHHHH
Confidence 345678999999999999999 8888543 222233332222110 00111 11223678889
Q ss_pred hcCCCCccCchhHHHHHHHHHHHHHH
Q 011044 463 ECTVESPIRESTQRKLLQDSQKLETR 488 (495)
Q Consensus 463 ~C~~~~p~~Rp~m~~v~~~l~~i~~~ 488 (495)
.|...+|.+||++.++++.|++++++
T Consensus 242 ~~l~~~p~~Rps~~~ll~~l~~l~~~ 267 (269)
T 4hcu_A 242 HCWRERPEDRPAFSRLLRQLAEIAES 267 (269)
T ss_dssp HHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred HHccCCcccCcCHHHHHHHHHHHHHc
Confidence 99999999999999999999998764
No 210
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A
Probab=97.69 E-value=1.1e-05 Score=78.50 Aligned_cols=85 Identities=20% Similarity=0.404 Sum_probs=57.2
Q ss_pred CccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044 383 EGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA 461 (495)
Q Consensus 383 ~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~ 461 (495)
....+.++|||||||++.||+| |+.|....- ...+...+.. ..... . ...+...+.++.
T Consensus 279 ~~~~~~~~DvwslG~il~ellt~g~~p~~~~~--~~~~~~~~~~---~~~~~-----~----------~~~~~~~l~~li 338 (370)
T 2psq_A 279 DRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIP--VEELFKLLKE---GHRMD-----K----------PANCTNELYMMM 338 (370)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC--GGGHHHHHHT---TCCCC-----C----------CTTSCHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCCCCCC--HHHHHHHHhc---CCCCC-----C----------CCCCCHHHHHHH
Confidence 3446678999999999999999 888864321 1122222211 11000 0 012233477889
Q ss_pred hhcCCCCccCchhHHHHHHHHHHHHH
Q 011044 462 MECTVESPIRESTQRKLLQDSQKLET 487 (495)
Q Consensus 462 ~~C~~~~p~~Rp~m~~v~~~l~~i~~ 487 (495)
..|...+|.+||++.|+++.|+.+..
T Consensus 339 ~~~l~~dP~~Rpt~~ell~~L~~il~ 364 (370)
T 2psq_A 339 RDCWHAVPSQRPTFKQLVEDLDRILT 364 (370)
T ss_dssp HHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHHcCCChhhCcCHHHHHHHHHHHHH
Confidence 99999999999999999999998764
No 211
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7
Probab=97.69 E-value=1.2e-05 Score=77.22 Aligned_cols=86 Identities=19% Similarity=0.344 Sum_probs=58.3
Q ss_pred ccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044 384 GRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM 462 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~ 462 (495)
...+.++||||||+++.|++| |+.|... .+................ ...+...+.++..
T Consensus 251 ~~~~~~~Di~slG~il~el~t~g~~p~~~-----~~~~~~~~~~~~~~~~~~---------------~~~~~~~l~~li~ 310 (343)
T 1luf_A 251 NRYTTESDVWAYGVVLWEIFSYGLQPYYG-----MAHEEVIYYVRDGNILAC---------------PENCPLELYNLMR 310 (343)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTTCCTTTT-----SCHHHHHHHHHTTCCCCC---------------CTTCCHHHHHHHH
T ss_pred CCcCcccccHHHHHHHHHHHhcCCCcCCC-----CChHHHHHHHhCCCcCCC---------------CCCCCHHHHHHHH
Confidence 346678999999999999999 8888642 222233332222211100 0112334778899
Q ss_pred hcCCCCccCchhHHHHHHHHHHHHHHH
Q 011044 463 ECTVESPIRESTQRKLLQDSQKLETRC 489 (495)
Q Consensus 463 ~C~~~~p~~Rp~m~~v~~~l~~i~~~~ 489 (495)
.|...+|.+||++.++++.|+.+..++
T Consensus 311 ~~l~~~p~~Rps~~~~~~~L~~~~~~~ 337 (343)
T 1luf_A 311 LCWSKLPADRPSFCSIHRILQRMCERA 337 (343)
T ss_dssp HHTCSSGGGSCCHHHHHHHHHHTTC--
T ss_pred HHcccCcccCCCHHHHHHHHHHHHhhh
Confidence 999999999999999999999887654
No 212
>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*
Probab=97.69 E-value=1e-05 Score=75.16 Aligned_cols=86 Identities=19% Similarity=0.342 Sum_probs=58.0
Q ss_pred ccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044 384 GRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM 462 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~ 462 (495)
...+.++||||+|+++.|++| |+.|.... +....+........ ... ...+...+.++..
T Consensus 189 ~~~~~~~Di~slG~il~~l~t~g~~p~~~~-----~~~~~~~~~~~~~~-----~~~----------~~~~~~~l~~li~ 248 (278)
T 1byg_A 189 KKFSTKSDVWSFGILLWEIYSFGRVPYPRI-----PLKDVVPRVEKGYK-----MDA----------PDGCPPAVYEVMK 248 (278)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTSCCSCTTS-----CGGGHHHHHTTTCC-----CCC----------CTTCCHHHHHHHH
T ss_pred CCCCchhcHHHHHHHHHHHHhCCCCCCCCC-----CHHHHHHHHhcCCC-----CCC----------cccCCHHHHHHHH
Confidence 345678999999999999998 88886432 11122221111110 000 0112334778889
Q ss_pred hcCCCCccCchhHHHHHHHHHHHHHHH
Q 011044 463 ECTVESPIRESTQRKLLQDSQKLETRC 489 (495)
Q Consensus 463 ~C~~~~p~~Rp~m~~v~~~l~~i~~~~ 489 (495)
.|...+|.+||++.|+++.|+.++..-
T Consensus 249 ~~l~~~p~~Rps~~~l~~~L~~i~~~~ 275 (278)
T 1byg_A 249 NCWHLDAAMRPSFLQLREQLEHIKTHE 275 (278)
T ss_dssp HHTCSSGGGSCCHHHHHHHHHHHHHHC
T ss_pred HHhcCChhhCCCHHHHHHHHHHHHhhh
Confidence 999999999999999999999998653
No 213
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Probab=97.69 E-value=1.1e-05 Score=80.86 Aligned_cols=83 Identities=23% Similarity=0.378 Sum_probs=57.1
Q ss_pred ccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044 384 GRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM 462 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~ 462 (495)
+..+.++|||||||++.|++| |+.|... .+....++......... ....+...+.++..
T Consensus 360 ~~~~~~~DvwslG~~l~el~t~g~~P~~~-----~~~~~~~~~i~~~~~~~---------------~~~~~~~~l~~li~ 419 (454)
T 1qcf_A 360 GSFTIKSDVWSFGILLMEIVTYGRIPYPG-----MSNPEVIRALERGYRMP---------------RPENCPEELYNIMM 419 (454)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTSCCSSTT-----CCHHHHHHHHHHTCCCC---------------CCTTSCHHHHHHHH
T ss_pred CCCCcHHHHHhHHHHHHHHHhCCCCCCCC-----CCHHHHHHHHHcCCCCC---------------CCCCCCHHHHHHHH
Confidence 456778999999999999999 9888643 22222222211111000 01123345778999
Q ss_pred hcCCCCccCchhHHHHHHHHHHHH
Q 011044 463 ECTVESPIRESTQRKLLQDSQKLE 486 (495)
Q Consensus 463 ~C~~~~p~~Rp~m~~v~~~l~~i~ 486 (495)
.|...+|.+||+|.++++.|+.+.
T Consensus 420 ~cl~~dp~~RPt~~~i~~~L~~~~ 443 (454)
T 1qcf_A 420 RCWKNRPEERPTFEYIQSVLDDFY 443 (454)
T ss_dssp HHTCSSGGGSCCHHHHHHHHHTSS
T ss_pred HHccCChhHCcCHHHHHHHHHHHH
Confidence 999999999999999999998764
No 214
>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*
Probab=97.68 E-value=2e-05 Score=74.56 Aligned_cols=85 Identities=16% Similarity=0.314 Sum_probs=57.2
Q ss_pred ccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044 384 GRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM 462 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~ 462 (495)
...+.++||||||+++.|++| |+.|..... ...+...+. ...... . ...+...+.++..
T Consensus 224 ~~~~~~~Di~slG~il~el~~~g~~p~~~~~--~~~~~~~~~---~~~~~~-----~----------~~~~~~~l~~li~ 283 (313)
T 3brb_A 224 RVYTSKSDVWAFGVTMWEIATRGMTPYPGVQ--NHEMYDYLL---HGHRLK-----Q----------PEDCLDELYEIMY 283 (313)
T ss_dssp SCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC--GGGHHHHHH---TTCCCC-----C----------BTTCCHHHHHHHH
T ss_pred CCccchhhhHHHHHHHHHHHhcCCCCCccCC--HHHHHHHHH---cCCCCC-----C----------CccccHHHHHHHH
Confidence 445678999999999999999 777754321 112222221 111000 0 0112334778899
Q ss_pred hcCCCCccCchhHHHHHHHHHHHHHH
Q 011044 463 ECTVESPIRESTQRKLLQDSQKLETR 488 (495)
Q Consensus 463 ~C~~~~p~~Rp~m~~v~~~l~~i~~~ 488 (495)
.|...+|.+||++.++++.|+.+..+
T Consensus 284 ~~l~~dp~~Rps~~~l~~~L~~l~~~ 309 (313)
T 3brb_A 284 SCWRTDPLDRPTFSVLRLQLEKLLES 309 (313)
T ss_dssp HTTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHcCCChhhCcCHHHHHHHHHHHHHh
Confidence 99999999999999999999988754
No 215
>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*
Probab=97.67 E-value=1.7e-05 Score=75.67 Aligned_cols=83 Identities=13% Similarity=0.312 Sum_probs=55.7
Q ss_pred ccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044 384 GRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM 462 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~ 462 (495)
+..+.++||||||+++.|++| |+.|...... ..+...+....... .+. .+...+.++..
T Consensus 192 ~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~--~~~~~~~~~~~~~~-----~~~-------------~~~~~~~~li~ 251 (325)
T 3kex_A 192 GKYTHQSDVWSYGVTVWELMTFGAEPYAGLRL--AEVPDLLEKGERLA-----QPQ-------------ICTIDVYMVMV 251 (325)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCT--THHHHHHHTTCBCC-----CCT-------------TBCTTTTHHHH
T ss_pred CCCChhhHhHHhHHHHHHHHhCCCCCccccCH--HHHHHHHHcCCCCC-----CCC-------------cCcHHHHHHHH
Confidence 345678999999999999999 9999654221 22223322211100 000 01112567888
Q ss_pred hcCCCCccCchhHHHHHHHHHHHH
Q 011044 463 ECTVESPIRESTQRKLLQDSQKLE 486 (495)
Q Consensus 463 ~C~~~~p~~Rp~m~~v~~~l~~i~ 486 (495)
.|...+|.+||++.++++.|+.+.
T Consensus 252 ~~l~~dp~~Rps~~el~~~l~~~~ 275 (325)
T 3kex_A 252 KCWMIDENIRPTFKELANEFTRMA 275 (325)
T ss_dssp HHTCSCTTTSCCHHHHHHHHHHHT
T ss_pred HHcCCChhhCcCHHHHHHHHHHHH
Confidence 999999999999999999998875
No 216
>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*
Probab=97.67 E-value=2.3e-05 Score=72.93 Aligned_cols=85 Identities=14% Similarity=0.222 Sum_probs=57.4
Q ss_pred ccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044 384 GRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM 462 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~ 462 (495)
...+.++||||||+++.|++| |+.|..... ...+...+........ + ..+...+.++..
T Consensus 189 ~~~~~~~Di~slG~il~~llt~g~~p~~~~~--~~~~~~~~~~~~~~~~-----~-------------~~~~~~l~~li~ 248 (281)
T 3cc6_A 189 RRFTTASDVWMFAVCMWEILSFGKQPFFWLE--NKDVIGVLEKGDRLPK-----P-------------DLCPPVLYTLMT 248 (281)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTTCCTTTTSC--GGGHHHHHHHTCCCCC-----C-------------TTCCHHHHHHHH
T ss_pred CCCCchhccHHHHHHHHHHHhCCCCCcccCC--hHHHHHHHhcCCCCCC-----C-------------CCCCHHHHHHHH
Confidence 345678999999999999999 999964321 1222222222111000 0 011233778899
Q ss_pred hcCCCCccCchhHHHHHHHHHHHHHH
Q 011044 463 ECTVESPIRESTQRKLLQDSQKLETR 488 (495)
Q Consensus 463 ~C~~~~p~~Rp~m~~v~~~l~~i~~~ 488 (495)
.|...+|.+||++.|+++.|+.+...
T Consensus 249 ~~l~~~p~~Rps~~ell~~L~~~~~~ 274 (281)
T 3cc6_A 249 RCWDYDPSDRPRFTELVCSLSDVYQM 274 (281)
T ss_dssp HHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHccCCchhCcCHHHHHHHHHHHHHh
Confidence 99999999999999999999987654
No 217
>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}
Probab=97.66 E-value=1.7e-05 Score=75.82 Aligned_cols=84 Identities=17% Similarity=0.285 Sum_probs=57.6
Q ss_pred ccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044 384 GRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM 462 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~ 462 (495)
...+.++||||+|+++.|++| |+.|.+..-. ..+...+........ ...+...+.++..
T Consensus 194 ~~~~~~~Di~slG~il~ell~~g~~p~~~~~~--~~~~~~~~~~~~~~~------------------~~~~~~~l~~li~ 253 (327)
T 3lzb_A 194 RIYTHQSDVWSYGVTVWELMTFGSKPYDGIPA--SEISSILEKGERLPQ------------------PPICTIDVYMIMR 253 (327)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCG--GGHHHHHHTTCCCCC------------------CTTBCHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHCCCCCCCCCCH--HHHHHHHHcCCCCCC------------------CccCCHHHHHHHH
Confidence 345678999999999999999 9999654221 223333322111000 0112234778899
Q ss_pred hcCCCCccCchhHHHHHHHHHHHHH
Q 011044 463 ECTVESPIRESTQRKLLQDSQKLET 487 (495)
Q Consensus 463 ~C~~~~p~~Rp~m~~v~~~l~~i~~ 487 (495)
.|...+|.+||++.|+++.|+.+..
T Consensus 254 ~~l~~dp~~Rps~~ell~~L~~~~~ 278 (327)
T 3lzb_A 254 KCWMIDADSRPKFRELIIEFSKMAR 278 (327)
T ss_dssp HHTCSSGGGSCCHHHHHHHHHHHHT
T ss_pred HHcCCChhHCcCHHHHHHHHHHHHh
Confidence 9999999999999999999998763
No 218
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=97.66 E-value=1.2e-05 Score=83.79 Aligned_cols=86 Identities=14% Similarity=0.253 Sum_probs=59.2
Q ss_pred CccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044 383 EGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA 461 (495)
Q Consensus 383 ~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~ 461 (495)
.+..+.++|||||||++.|++| |+.|....- ...+...+.. ..... ....+...+.++.
T Consensus 513 ~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~--~~~~~~~i~~---~~~~~---------------~p~~~~~~l~~li 572 (613)
T 2ozo_A 513 FRKFSSRSDVWSYGVTMWEALSYGQKPYKKMK--GPEVMAFIEQ---GKRME---------------CPPECPPELYALM 572 (613)
T ss_dssp HCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC--SHHHHHHHHT---TCCCC---------------CCTTCCHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCC--HHHHHHHHHc---CCCCC---------------CCCcCCHHHHHHH
Confidence 3556778999999999999998 999965321 1122222221 11000 0112344578899
Q ss_pred hhcCCCCccCchhHHHHHHHHHHHHHH
Q 011044 462 MECTVESPIRESTQRKLLQDSQKLETR 488 (495)
Q Consensus 462 ~~C~~~~p~~Rp~m~~v~~~l~~i~~~ 488 (495)
..|...+|.+||+|.++++.|+.+-..
T Consensus 573 ~~cl~~dP~~RPs~~~l~~~L~~~~~~ 599 (613)
T 2ozo_A 573 SDCWIYKWEDRPDFLTVEQRMRACYYS 599 (613)
T ss_dssp HHTTCSSTTTSCCHHHHHHHHHHHHHH
T ss_pred HHHcCCChhHCcCHHHHHHHHHHHHHH
Confidence 999999999999999999999876543
No 219
>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*
Probab=97.66 E-value=1.9e-05 Score=73.60 Aligned_cols=84 Identities=17% Similarity=0.335 Sum_probs=56.5
Q ss_pred cccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044 385 RVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME 463 (495)
Q Consensus 385 ~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~ 463 (495)
..+.++||||+|+++.|+++ |+.|...... ..+...+..... .. + ...+...+.++...
T Consensus 193 ~~~~~~Di~slG~~l~ell~~g~~pf~~~~~--~~~~~~i~~~~~---~~-----~----------~~~~~~~l~~li~~ 252 (281)
T 1mp8_A 193 RFTSASDVWMFGVCMWEILMHGVKPFQGVKN--NDVIGRIENGER---LP-----M----------PPNCPPTLYSLMTK 252 (281)
T ss_dssp CCSHHHHHHHHHHHHHHHHTTSCCTTTTCCG--GGHHHHHHTTCC---CC-----C----------CTTCCHHHHHHHHH
T ss_pred CCCCccCchHHHHHHHHHHhcCCCCCCcCCH--HHHHHHHHcCCC---CC-----C----------CCCCCHHHHHHHHH
Confidence 45668999999999999997 8888653221 122222221110 00 0 01122347788999
Q ss_pred cCCCCccCchhHHHHHHHHHHHHHH
Q 011044 464 CTVESPIRESTQRKLLQDSQKLETR 488 (495)
Q Consensus 464 C~~~~p~~Rp~m~~v~~~l~~i~~~ 488 (495)
|...+|.+||++.|+++.|+.+...
T Consensus 253 ~l~~~p~~Rps~~~l~~~l~~~~~~ 277 (281)
T 1mp8_A 253 CWAYDPSRRPRFTELKAQLSTILEE 277 (281)
T ss_dssp HTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HccCChhhCcCHHHHHHHHHHHHHH
Confidence 9999999999999999999987643
No 220
>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*
Probab=97.66 E-value=1.8e-05 Score=74.84 Aligned_cols=86 Identities=14% Similarity=0.337 Sum_probs=56.9
Q ss_pred ccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044 384 GRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM 462 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~ 462 (495)
...+.++||||||+++.|++| |+.|...... ...+...++..... ... ......+.++..
T Consensus 222 ~~~~~~~Di~slG~il~ellt~g~~p~~~~~~-~~~~~~~~~~~~~~----~~~--------------~~~~~~l~~li~ 282 (313)
T 1t46_A 222 CVYTFESDVWSYGIFLWELFSLGSSPYPGMPV-DSKFYKMIKEGFRM----LSP--------------EHAPAEMYDIMK 282 (313)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCS-SHHHHHHHHHTCCC----CCC--------------TTSCHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHhCCCCCCCcccc-hhHHHHHhccCCCC----CCc--------------ccCCHHHHHHHH
Confidence 346678999999999999999 8888643221 11111222211110 000 012234778899
Q ss_pred hcCCCCccCchhHHHHHHHHHHHHHH
Q 011044 463 ECTVESPIRESTQRKLLQDSQKLETR 488 (495)
Q Consensus 463 ~C~~~~p~~Rp~m~~v~~~l~~i~~~ 488 (495)
.|...+|.+||++.|+++.|+.+-..
T Consensus 283 ~~l~~dp~~Rps~~ell~~L~~~~~~ 308 (313)
T 1t46_A 283 TCWDADPLKRPTFKQIVQLIEKQISE 308 (313)
T ss_dssp HHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHcCCCchhCcCHHHHHHHHHHHHHH
Confidence 99999999999999999999987654
No 221
>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*
Probab=97.65 E-value=1.9e-05 Score=73.83 Aligned_cols=86 Identities=17% Similarity=0.241 Sum_probs=57.7
Q ss_pred ccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044 384 GRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM 462 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~ 462 (495)
...+.++||||+|+++.|++| |+.|... .+-...+.......... .. ...+...+.++..
T Consensus 199 ~~~~~~~Di~slG~il~~l~~~g~~p~~~-----~~~~~~~~~~~~~~~~~----~~----------~~~~~~~l~~li~ 259 (291)
T 1u46_A 199 RTFSHASDTWMFGVTLWEMFTYGQEPWIG-----LNGSQILHKIDKEGERL----PR----------PEDCPQDIYNVMV 259 (291)
T ss_dssp CEEEHHHHHHHHHHHHHHHHTTSCCTTTT-----CCHHHHHHHHHTSCCCC----CC----------CTTCCHHHHHHHH
T ss_pred CCCCchhhHHHHHHHHHHHHhCCCCCccc-----CCHHHHHHHHHccCCCC----CC----------CcCcCHHHHHHHH
Confidence 345678999999999999999 8888643 22333333332221100 00 0112334778899
Q ss_pred hcCCCCccCchhHHHHHHHHHHHHHH
Q 011044 463 ECTVESPIRESTQRKLLQDSQKLETR 488 (495)
Q Consensus 463 ~C~~~~p~~Rp~m~~v~~~l~~i~~~ 488 (495)
.|...+|.+||++.++++.|+++...
T Consensus 260 ~~l~~~p~~Rps~~~l~~~l~~~~~~ 285 (291)
T 1u46_A 260 QCWAHKPEDRPTFVALRDFLLEAQPT 285 (291)
T ss_dssp HHTCSSGGGSCCHHHHHHHHHHHC--
T ss_pred HHccCCcccCcCHHHHHHHHHHhCcc
Confidence 99999999999999999999887643
No 222
>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...
Probab=97.65 E-value=1.3e-05 Score=75.38 Aligned_cols=87 Identities=14% Similarity=0.296 Sum_probs=56.3
Q ss_pred ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044 384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME 463 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~ 463 (495)
...+.++||||+|+++.|++||..|...... ...+...+....... .+ ..+...+.++...
T Consensus 207 ~~~~~~~Di~slG~il~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~-------------~~~~~~l~~li~~ 267 (298)
T 3f66_A 207 QKFTTKSDVWSFGVLLWELMTRGAPPYPDVN-TFDITVYLLQGRRLL-----QP-------------EYCPDPLYEVMLK 267 (298)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTSCCSSTTSC-TTTHHHHHHTTCCCC-----CC-------------TTCCHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHhCCCCCCccCC-HHHHHHHHhcCCCCC-----CC-------------ccCCHHHHHHHHH
Confidence 3456789999999999999996665322111 122222222111100 00 0112347788999
Q ss_pred cCCCCccCchhHHHHHHHHHHHHHHH
Q 011044 464 CTVESPIRESTQRKLLQDSQKLETRC 489 (495)
Q Consensus 464 C~~~~p~~Rp~m~~v~~~l~~i~~~~ 489 (495)
|.+.+|.+||++.|++++|+++...+
T Consensus 268 ~l~~~p~~Rps~~ell~~L~~~~~~~ 293 (298)
T 3f66_A 268 CWHPKAEMRPSFSELVSRISAIFSTF 293 (298)
T ss_dssp HTCSSGGGSCCHHHHHHHHHHHHHTS
T ss_pred HcCCChhhCcCHHHHHHHHHHHHHhh
Confidence 99999999999999999999887543
No 223
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Probab=97.64 E-value=1.1e-05 Score=81.73 Aligned_cols=83 Identities=18% Similarity=0.292 Sum_probs=56.6
Q ss_pred CccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044 383 EGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA 461 (495)
Q Consensus 383 ~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~ 461 (495)
.+..+.++|||||||++.|++| |+.|....- ...+.+.+....... ....+...+.++.
T Consensus 393 ~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~--~~~~~~~~~~~~~~~------------------~~~~~~~~l~~li 452 (495)
T 1opk_A 393 YNKFSIKSDVWAFGVLLWEIATYGMSPYPGID--LSQVYELLEKDYRME------------------RPEGCPEKVYELM 452 (495)
T ss_dssp HCEECHHHHHHHHHHHHHHHHTTSCCSSTTCC--GGGHHHHHHTTCCCC------------------CCTTCCHHHHHHH
T ss_pred cCCCCcHHhHHhHHHHHHHHHhCCCCCCCCCC--HHHHHHHHHcCCCCC------------------CCCCCCHHHHHHH
Confidence 3456778999999999999999 888864321 112223222211100 0112334577889
Q ss_pred hhcCCCCccCchhHHHHHHHHHHH
Q 011044 462 MECTVESPIRESTQRKLLQDSQKL 485 (495)
Q Consensus 462 ~~C~~~~p~~Rp~m~~v~~~l~~i 485 (495)
..|...+|.+||+|.++++.|+.+
T Consensus 453 ~~cl~~dP~~RPs~~el~~~L~~~ 476 (495)
T 1opk_A 453 RACWQWNPSDRPSFAEIHQAFETM 476 (495)
T ss_dssp HHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred HHHcCcChhHCcCHHHHHHHHHHH
Confidence 999999999999999999999865
No 224
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Probab=97.63 E-value=1.9e-05 Score=76.89 Aligned_cols=86 Identities=13% Similarity=0.342 Sum_probs=57.1
Q ss_pred CccccCCCcceeehhhhhhcccCC-CCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044 383 EGRVSTNGDIYNFGIMIMETFTAK-KPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA 461 (495)
Q Consensus 383 ~~~~~~~~dvysfgilllE~~tgk-~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~ 461 (495)
....+.++||||||+++.|++||. .|.... ....+...+...... ..+ ..+...+.++.
T Consensus 270 ~~~~~~~~DvwSlG~il~ellt~~~~p~~~~--~~~~~~~~~~~~~~~-----~~p-------------~~~~~~l~~li 329 (373)
T 3c1x_A 270 TQKFTTKSDVWSFGVLLWELMTRGAPPYPDV--NTFDITVYLLQGRRL-----LQP-------------EYCPDPLYEVM 329 (373)
T ss_dssp HCCCCHHHHHHHHHHHHHHHHTTSCCSCTTS--CSSCHHHHHHTTCCC-----CCC-------------TTCCHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHhCcCCCCCCC--CHHHHHHHHHcCCCC-----CCC-------------CCCCHHHHHHH
Confidence 345667899999999999999954 454321 122333333221100 001 11233477889
Q ss_pred hhcCCCCccCchhHHHHHHHHHHHHHH
Q 011044 462 MECTVESPIRESTQRKLLQDSQKLETR 488 (495)
Q Consensus 462 ~~C~~~~p~~Rp~m~~v~~~l~~i~~~ 488 (495)
..|...+|.+||++.|+++.|+.+...
T Consensus 330 ~~cl~~dp~~RPs~~ell~~L~~i~~~ 356 (373)
T 3c1x_A 330 LKCWHPKAEMRPSFSELVSRISAIFST 356 (373)
T ss_dssp HHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred HHHcCCChhhCcCHHHHHHHHHHHHHh
Confidence 999999999999999999999988654
No 225
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Probab=97.62 E-value=2.6e-05 Score=75.82 Aligned_cols=84 Identities=17% Similarity=0.313 Sum_probs=57.5
Q ss_pred ccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044 384 GRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM 462 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~ 462 (495)
+..+.++|||||||++.|++| |+.|... .+....++.......... ...+...+.++..
T Consensus 261 ~~~~~~~DvwslG~il~ellt~g~~pf~~-----~~~~~~~~~i~~~~~~~~---------------~~~~~~~l~~li~ 320 (367)
T 3l9p_A 261 GIFTSKTDTWSFGVLLWEIFSLGYMPYPS-----KSNQEVLEFVTSGGRMDP---------------PKNCPGPVYRIMT 320 (367)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTSCCSSTT-----CCHHHHHHHHHTTCCCCC---------------CTTCCHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHhCCCCCCCC-----CCHHHHHHHHHcCCCCCC---------------CccCCHHHHHHHH
Confidence 345678999999999999998 8888542 222233332222211100 0122334778899
Q ss_pred hcCCCCccCchhHHHHHHHHHHHHH
Q 011044 463 ECTVESPIRESTQRKLLQDSQKLET 487 (495)
Q Consensus 463 ~C~~~~p~~Rp~m~~v~~~l~~i~~ 487 (495)
.|.+.+|.+||++.++++.|+.+..
T Consensus 321 ~~l~~dP~~Rps~~eil~~l~~~~~ 345 (367)
T 3l9p_A 321 QCWQHQPEDRPNFAIILERIEYCTQ 345 (367)
T ss_dssp HHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHcCCCHhHCcCHHHHHHHHHHHhh
Confidence 9999999999999999999988764
No 226
>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=97.62 E-value=3e-05 Score=71.41 Aligned_cols=85 Identities=20% Similarity=0.395 Sum_probs=57.5
Q ss_pred ccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044 384 GRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM 462 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~ 462 (495)
...+.++||||+|+++.|++| |+.|... .+....+......... ..+. .....+.++..
T Consensus 180 ~~~~~~~Di~slG~il~~l~~~g~~p~~~-----~~~~~~~~~i~~~~~~--~~~~-------------~~~~~l~~li~ 239 (267)
T 3t9t_A 180 SRYSSKSDVWSFGVLMWEVFSEGKIPYEN-----RSNSEVVEDISTGFRL--YKPR-------------LASTHVYQIMN 239 (267)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTSCCTTTT-----CCHHHHHHHHHTTCCC--CCCT-------------TSCHHHHHHHH
T ss_pred CCccchhchhhhHHHHHHHhccCCCCCCC-----CCHHHHHHHHhcCCcC--CCCc-------------cCcHHHHHHHH
Confidence 345678999999999999999 7888542 2222333322221100 0011 11233678899
Q ss_pred hcCCCCccCchhHHHHHHHHHHHHHH
Q 011044 463 ECTVESPIRESTQRKLLQDSQKLETR 488 (495)
Q Consensus 463 ~C~~~~p~~Rp~m~~v~~~l~~i~~~ 488 (495)
.|...+|.+||++.++++.|+.+.++
T Consensus 240 ~~l~~~p~~Rps~~~ll~~L~~l~~~ 265 (267)
T 3t9t_A 240 HCWRERPEDRPAFSRLLRQLAEIAES 265 (267)
T ss_dssp HHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred HHccCChhhCcCHHHHHHHHHHHHhc
Confidence 99999999999999999999998753
No 227
>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*
Probab=97.61 E-value=1.9e-05 Score=74.81 Aligned_cols=84 Identities=18% Similarity=0.342 Sum_probs=57.0
Q ss_pred ccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044 384 GRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM 462 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~ 462 (495)
...+.++||||+|+++.|++| |+.|...... ..+...++...... . ...+...+.++..
T Consensus 227 ~~~~~~~Di~slG~il~el~t~g~~p~~~~~~--~~~~~~~~~~~~~~--------~----------~~~~~~~~~~li~ 286 (314)
T 2ivs_A 227 HIYTTQSDVWSFGVLLWEIVTLGGNPYPGIPP--ERLFNLLKTGHRME--------R----------PDNCSEEMYRLML 286 (314)
T ss_dssp CEECHHHHHHHHHHHHHHHHTTSCCSSTTCCG--GGHHHHHHTTCCCC--------C----------CTTCCHHHHHHHH
T ss_pred CCcCchhhHHHHHHHHHHHHhCCCCCCCCCCH--HHHHHHhhcCCcCC--------C----------CccCCHHHHHHHH
Confidence 446778999999999999999 8888643211 12222222111100 0 0112234778899
Q ss_pred hcCCCCccCchhHHHHHHHHHHHHH
Q 011044 463 ECTVESPIRESTQRKLLQDSQKLET 487 (495)
Q Consensus 463 ~C~~~~p~~Rp~m~~v~~~l~~i~~ 487 (495)
.|.+.+|.+||++.|+++.|+.+..
T Consensus 287 ~~l~~dp~~Rps~~~l~~~l~~~~~ 311 (314)
T 2ivs_A 287 QCWKQEPDKRPVFADISKDLEKMMV 311 (314)
T ss_dssp HHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHccCChhhCcCHHHHHHHHHHHHh
Confidence 9999999999999999999998754
No 228
>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}
Probab=97.60 E-value=2.5e-05 Score=74.34 Aligned_cols=83 Identities=17% Similarity=0.379 Sum_probs=56.0
Q ss_pred cccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044 385 RVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME 463 (495)
Q Consensus 385 ~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~ 463 (495)
..+.++||||||+++.|++| |+.|....- ...+...+ ....... ....+...+.++...
T Consensus 215 ~~~~~~Di~slG~il~ell~~g~~p~~~~~--~~~~~~~~---~~~~~~~---------------~~~~~~~~l~~li~~ 274 (323)
T 3qup_A 215 LYTVHSDVWAFGVTMWEIMTRGQTPYAGIE--NAEIYNYL---IGGNRLK---------------QPPECMEEVYDLMYQ 274 (323)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTSCCTTTTCC--GGGHHHHH---HTTCCCC---------------CCTTCCHHHHHHHHH
T ss_pred CCCCccchhhHHHHHHHHHhCCCCCccccC--hHHHHHHH---hcCCCCC---------------CCCccCHHHHHHHHH
Confidence 45678999999999999999 888864321 11222221 1111000 001122347789999
Q ss_pred cCCCCccCchhHHHHHHHHHHHHH
Q 011044 464 CTVESPIRESTQRKLLQDSQKLET 487 (495)
Q Consensus 464 C~~~~p~~Rp~m~~v~~~l~~i~~ 487 (495)
|...+|.+||++.++++.|+++..
T Consensus 275 ~l~~dp~~Rps~~~l~~~l~~~l~ 298 (323)
T 3qup_A 275 CWSADPKQRPSFTCLRMELENILG 298 (323)
T ss_dssp TTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HccCChhhCcCHHHHHHHHHHHHH
Confidence 999999999999999999998753
No 229
>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...
Probab=97.60 E-value=2.5e-05 Score=74.79 Aligned_cols=84 Identities=19% Similarity=0.394 Sum_probs=57.6
Q ss_pred ccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044 384 GRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM 462 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~ 462 (495)
...+.++||||||+++.|++| |+.|... .+.....+......... . ...+...+.++..
T Consensus 234 ~~~~~~~Di~slG~il~ellt~g~~p~~~-----~~~~~~~~~~~~~~~~~-----~----------~~~~~~~l~~li~ 293 (334)
T 2pvf_A 234 RVYTHQSDVWSFGVLMWEIFTLGGSPYPG-----IPVEELFKLLKEGHRMD-----K----------PANCTNELYMMMR 293 (334)
T ss_dssp CEECHHHHHHHHHHHHHHHHTTSCCSSTT-----CCHHHHHHHHHHTCCCC-----C----------CTTCCHHHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHHHhCCCCCcCc-----CCHHHHHHHHhcCCCCC-----C----------CccCCHHHHHHHH
Confidence 446778999999999999999 8888542 23333332222111000 0 0012234778899
Q ss_pred hcCCCCccCchhHHHHHHHHHHHHH
Q 011044 463 ECTVESPIRESTQRKLLQDSQKLET 487 (495)
Q Consensus 463 ~C~~~~p~~Rp~m~~v~~~l~~i~~ 487 (495)
.|...+|.+||++.|+++.|+.+..
T Consensus 294 ~~l~~dp~~Rps~~ell~~L~~l~~ 318 (334)
T 2pvf_A 294 DCWHAVPSQRPTFKQLVEDLDRILT 318 (334)
T ss_dssp HHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHccCChhhCcCHHHHHHHHHHHHh
Confidence 9999999999999999999998764
No 230
>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...
Probab=97.59 E-value=3e-05 Score=71.99 Aligned_cols=85 Identities=25% Similarity=0.350 Sum_probs=57.4
Q ss_pred ccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044 384 GRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM 462 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~ 462 (495)
+..+.++||||+|+++.|++| |+.|... .+-....+........ . .+ ..+...+.++..
T Consensus 185 ~~~~~~~Di~slG~il~el~~~g~~p~~~-----~~~~~~~~~~~~~~~~-~-~~-------------~~~~~~l~~li~ 244 (279)
T 1qpc_A 185 GTFTIKSDVWSFGILLTEIVTHGRIPYPG-----MTNPEVIQNLERGYRM-V-RP-------------DNCPEELYQLMR 244 (279)
T ss_dssp CEECHHHHHHHHHHHHHHHHTTTCCSSTT-----CCHHHHHHHHHTTCCC-C-CC-------------TTCCHHHHHHHH
T ss_pred CCCCchhhhHHHHHHHHHHHhCCCCCCcc-----cCHHHHHHHHhcccCC-C-Cc-------------ccccHHHHHHHH
Confidence 445678999999999999999 8888542 2222332222211100 0 00 012234778899
Q ss_pred hcCCCCccCchhHHHHHHHHHHHHHH
Q 011044 463 ECTVESPIRESTQRKLLQDSQKLETR 488 (495)
Q Consensus 463 ~C~~~~p~~Rp~m~~v~~~l~~i~~~ 488 (495)
.|...+|.+||++.++++.|+.+...
T Consensus 245 ~~l~~~p~~Rps~~~l~~~l~~~~~~ 270 (279)
T 1qpc_A 245 LCWKERPEDRPTFDYLRSVLEDFFTA 270 (279)
T ss_dssp HHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHhccChhhCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999987654
No 231
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}
Probab=97.59 E-value=1.9e-05 Score=75.41 Aligned_cols=82 Identities=15% Similarity=0.178 Sum_probs=52.9
Q ss_pred ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044 384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME 463 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~ 463 (495)
...+.++||||||+++.|++||+.|.+... ....+........ ...+...+.++...
T Consensus 228 ~~~~~~~Dv~slG~il~el~~g~~p~~~~~-----~~~~~~~~~~~~~------------------~~~~~~~~~~li~~ 284 (337)
T 3ll6_A 228 FPIGEKQDIWALGCILYLLCFRQHPFEDGA-----KLRIVNGKYSIPP------------------HDTQYTVFHSLIRA 284 (337)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHSSCCC-----------------CCCCT------------------TCCSSGGGHHHHHH
T ss_pred CCCChHHhHHHHHHHHHHHHhCCCCCcchh-----HHHhhcCcccCCc------------------ccccchHHHHHHHH
Confidence 345678999999999999999999964311 1111111111000 00011125678899
Q ss_pred cCCCCccCchhHHHHHHHHHHHHHH
Q 011044 464 CTVESPIRESTQRKLLQDSQKLETR 488 (495)
Q Consensus 464 C~~~~p~~Rp~m~~v~~~l~~i~~~ 488 (495)
|.+.+|.+||++.|+++.|+.+...
T Consensus 285 ~l~~~p~~Rps~~e~l~~l~~~~~~ 309 (337)
T 3ll6_A 285 MLQVNPEERLSIAEVVHQLQEIAAA 309 (337)
T ss_dssp HSCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HccCChhhCcCHHHHHHHHHHHHhc
Confidence 9999999999999999999988653
No 232
>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=97.58 E-value=2.5e-05 Score=72.95 Aligned_cols=85 Identities=14% Similarity=0.264 Sum_probs=57.6
Q ss_pred ccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044 384 GRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM 462 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~ 462 (495)
...+.++||||+|+++.|++| |+.|..... ...+...+. ...... . ...+...+.++..
T Consensus 188 ~~~~~~~Di~slG~il~ellt~g~~p~~~~~--~~~~~~~i~---~~~~~~-----~----------~~~~~~~l~~li~ 247 (287)
T 1u59_A 188 RKFSSRSDVWSYGVTMWEALSYGQKPYKKMK--GPEVMAFIE---QGKRME-----C----------PPECPPELYALMS 247 (287)
T ss_dssp CEECHHHHHHHHHHHHHHHHTTSCCTTTTCC--THHHHHHHH---TTCCCC-----C----------CTTCCHHHHHHHH
T ss_pred CCCCchhhHHHHHHHHHHHHcCCCCCcccCC--HHHHHHHHh---cCCcCC-----C----------CCCcCHHHHHHHH
Confidence 446678999999999999999 999964321 112222222 111000 0 0112334778899
Q ss_pred hcCCCCccCchhHHHHHHHHHHHHHH
Q 011044 463 ECTVESPIRESTQRKLLQDSQKLETR 488 (495)
Q Consensus 463 ~C~~~~p~~Rp~m~~v~~~l~~i~~~ 488 (495)
.|...+|.+||++.++++.|+.+...
T Consensus 248 ~~l~~~p~~Rps~~~l~~~l~~~~~~ 273 (287)
T 1u59_A 248 DCWIYKWEDRPDFLTVEQRMRACYYS 273 (287)
T ss_dssp HTTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHcCCChhhCcCHHHHHHHHHHHHHh
Confidence 99999999999999999999887644
No 233
>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*
Probab=97.58 E-value=2.7e-05 Score=72.89 Aligned_cols=84 Identities=15% Similarity=0.202 Sum_probs=56.3
Q ss_pred ccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044 384 GRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM 462 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~ 462 (495)
...+.++||||||+++.|++| |+.|.... +-....+......... . ...+...+.++..
T Consensus 195 ~~~~~~~Di~slG~il~~l~~~g~~p~~~~-----~~~~~~~~~~~~~~~~-----~----------~~~~~~~l~~li~ 254 (291)
T 1xbb_A 195 YKFSSKSDVWSFGVLMWEAFSYGQKPYRGM-----KGSEVTAMLEKGERMG-----C----------PAGCPREMYDLMN 254 (291)
T ss_dssp CEEEHHHHHHHHHHHHHHHHTTTCCSSTTC-----CHHHHHHHHHTTCCCC-----C----------CTTCCHHHHHHHH
T ss_pred CCCChhhhHHHHHHHHHHHHhcCCCCCCCC-----CHHHHHHHHHcCCCCC-----C----------CCCCCHHHHHHHH
Confidence 345678999999999999999 99986432 2122222111111000 0 0112234778899
Q ss_pred hcCCCCccCchhHHHHHHHHHHHHH
Q 011044 463 ECTVESPIRESTQRKLLQDSQKLET 487 (495)
Q Consensus 463 ~C~~~~p~~Rp~m~~v~~~l~~i~~ 487 (495)
.|...+|.+||++.++++.|+.+-.
T Consensus 255 ~~l~~dp~~Rps~~~l~~~L~~~~~ 279 (291)
T 1xbb_A 255 LCWTYDVENRPGFAAVELRLRNYYY 279 (291)
T ss_dssp HHTCSSTTTSCCHHHHHHHHHHHHH
T ss_pred HHcCCChhhCcCHHHHHHHHHHHHH
Confidence 9999999999999999999987643
No 234
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=97.57 E-value=3.8e-05 Score=73.51 Aligned_cols=85 Identities=19% Similarity=0.334 Sum_probs=57.4
Q ss_pred CccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044 383 EGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA 461 (495)
Q Consensus 383 ~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~ 461 (495)
....+.++||||||+++.|++| |+.|... .+-...++......... . ...+...+.++.
T Consensus 224 ~~~~~~~~Di~slG~il~ellt~g~~pf~~-----~~~~~~~~~~~~~~~~~-----~----------~~~~~~~l~~li 283 (333)
T 1mqb_A 224 YRKFTSASDVWSFGIVMWEVMTYGERPYWE-----LSNHEVMKAINDGFRLP-----T----------PMDCPSAIYQLM 283 (333)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHTTSCCTTTT-----CCHHHHHHHHHTTCCCC-----C----------CTTCBHHHHHHH
T ss_pred cCCCCchhhhHHHHHHHHHHHcCCCCCccc-----CCHHHHHHHHHCCCcCC-----C----------cccCCHHHHHHH
Confidence 3446678999999999999999 9988642 12222222222111000 0 011233477889
Q ss_pred hhcCCCCccCchhHHHHHHHHHHHHH
Q 011044 462 MECTVESPIRESTQRKLLQDSQKLET 487 (495)
Q Consensus 462 ~~C~~~~p~~Rp~m~~v~~~l~~i~~ 487 (495)
..|.+.+|.+||++.++++.|+.+..
T Consensus 284 ~~~l~~~p~~Rps~~~l~~~L~~~~~ 309 (333)
T 1mqb_A 284 MQCWQQERARRPKFADIVSILDKLIR 309 (333)
T ss_dssp HHHTCSSTTTSCCHHHHHHHHHHHHH
T ss_pred HHHcCCChhhCcCHHHHHHHHHHHHh
Confidence 99999999999999999999988754
No 235
>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*
Probab=97.56 E-value=1.2e-05 Score=74.89 Aligned_cols=83 Identities=13% Similarity=0.145 Sum_probs=54.9
Q ss_pred ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044 384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME 463 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~ 463 (495)
...+.++||||||+++.|++||+.|.... ..+........... .....+.++...
T Consensus 196 ~~~~~~~Di~slG~il~~l~~~~~~~~~~-------~~~~~~~~~~~~~~------------------~~~~~~~~li~~ 250 (284)
T 2a19_B 196 QDYGKEVDLYALGLILAELLHVCDTAFET-------SKFFTDLRDGIISD------------------IFDKKEKTLLQK 250 (284)
T ss_dssp SCCCTHHHHHHHHHHHHHHHSCCSSHHHH-------HHHHHHHHTTCCCT------------------TSCHHHHHHHHH
T ss_pred CCCcchhhhHHHHHHHHHHHhcCCcchhH-------HHHHHHhhcccccc------------------cCCHHHHHHHHH
Confidence 34577899999999999999998874321 12222211111100 011225678889
Q ss_pred cCCCCccCchhHHHHHHHHHHHHHHHHh
Q 011044 464 CTVESPIRESTQRKLLQDSQKLETRCLK 491 (495)
Q Consensus 464 C~~~~p~~Rp~m~~v~~~l~~i~~~~~~ 491 (495)
|...+|.+||++.|+++.++.++...-+
T Consensus 251 ~l~~dp~~Rps~~e~l~~l~~~~~~~~~ 278 (284)
T 2a19_B 251 LLSKKPEDRPNTSEILRTLTVWKKSPEK 278 (284)
T ss_dssp HTCSSGGGSCCHHHHHHHHHHHTC----
T ss_pred HccCChhhCcCHHHHHHHHHHHhhCCCc
Confidence 9999999999999999999988765443
No 236
>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*
Probab=97.56 E-value=1.4e-05 Score=76.44 Aligned_cols=92 Identities=14% Similarity=-0.009 Sum_probs=59.5
Q ss_pred CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044 383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM 462 (495)
Q Consensus 383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~ 462 (495)
....+.++||||||+++.|++||+.|....- ...+...++......... ....+ ...+. .+.++..
T Consensus 191 ~~~~~~~~Di~slG~il~ell~g~~Pf~~~~--~~~~~~~~~~i~~~~~~~-~~~~~----------~~~~p-~~~~li~ 256 (330)
T 2izr_A 191 GKEQSRRDDLEALGHMFMYFLRGSLPWQGLK--ADTLKERYQKIGDTKRAT-PIEVL----------CENFP-EMATYLR 256 (330)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHSSCTTTTCC--CSSHHHHHHHHHHHHHHS-CHHHH----------TTTCH-HHHHHHH
T ss_pred CCCCCchhHHHHHHHHHHHHhcCCCCccccc--cccHHHHHHHHHhhhccC-CHHHH----------hccCh-HHHHHHH
Confidence 3445678999999999999999999975432 122322222211100000 00000 01122 6888999
Q ss_pred hcCCCCccCchhHHHHHHHHHHHHHH
Q 011044 463 ECTVESPIRESTQRKLLQDSQKLETR 488 (495)
Q Consensus 463 ~C~~~~p~~Rp~m~~v~~~l~~i~~~ 488 (495)
.|...+|.+||++.++++.++.+..+
T Consensus 257 ~~l~~~p~~RP~~~~l~~~l~~~~~~ 282 (330)
T 2izr_A 257 YVRRLDFFEKPDYDYLRKLFTDLFDR 282 (330)
T ss_dssp HHHHCCTTCCCCHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999887654
No 237
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Probab=97.55 E-value=2.5e-05 Score=78.26 Aligned_cols=84 Identities=21% Similarity=0.309 Sum_probs=57.1
Q ss_pred CccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044 383 EGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA 461 (495)
Q Consensus 383 ~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~ 461 (495)
.+..+.++||||||+++.|++| |+.|... ......+.......... ....+...+.++.
T Consensus 355 ~~~~~~~sDvwslG~~l~el~t~g~~P~~~-----~~~~~~~~~i~~~~~~~---------------~~~~~~~~l~~li 414 (452)
T 1fmk_A 355 YGRFTIKSDVWSFGILLTELTTKGRVPYPG-----MVNREVLDQVERGYRMP---------------CPPECPESLHDLM 414 (452)
T ss_dssp HCCCCHHHHHHHHHHHHHHHHTTTCCSSTT-----CCHHHHHHHHHTTCCCC---------------CCTTSCHHHHHHH
T ss_pred cCCCCccccHHhHHHHHHHHHhCCCCCCCC-----CCHHHHHHHHHcCCCCC---------------CCCCCCHHHHHHH
Confidence 3456778999999999999999 8888542 22222222221111000 0112334577889
Q ss_pred hhcCCCCccCchhHHHHHHHHHHHH
Q 011044 462 MECTVESPIRESTQRKLLQDSQKLE 486 (495)
Q Consensus 462 ~~C~~~~p~~Rp~m~~v~~~l~~i~ 486 (495)
..|...+|.+||++.++++.|+.+.
T Consensus 415 ~~cl~~dP~~Rpt~~~l~~~L~~~~ 439 (452)
T 1fmk_A 415 CQCWRKEPEERPTFEYLQAFLEDYF 439 (452)
T ss_dssp HHHTCSSGGGSCCHHHHHHHHHTTT
T ss_pred HHHccCChhhCcCHHHHHHHHHHHh
Confidence 9999999999999999999998764
No 238
>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A
Probab=97.55 E-value=2.6e-05 Score=72.98 Aligned_cols=78 Identities=18% Similarity=0.240 Sum_probs=52.1
Q ss_pred cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhc
Q 011044 385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMEC 464 (495)
Q Consensus 385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C 464 (495)
..+.++||||+|+++.|++||+.|... ..+...+.+...........+ ......+.++...|
T Consensus 205 ~~~~~~Di~slG~~l~~l~~g~~pf~~----~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~l~~li~~~ 266 (290)
T 1t4h_A 205 KYDESVDVYAFGMCMLEMATSEYPYSE----CQNAAQIYRRVTSGVKPASFD--------------KVAIPEVKEIIEGC 266 (290)
T ss_dssp CCCTHHHHHHHHHHHHHHHHSSCTTTT----CSSHHHHHHHHTTTCCCGGGG--------------GCCCHHHHHHHHHH
T ss_pred cCCCcchHHHHHHHHHHHHhCCCCCCC----cCcHHHHHHHHhccCCccccC--------------CCCCHHHHHHHHHH
Confidence 466789999999999999999999643 233334443332221100000 01123377889999
Q ss_pred CCCCccCchhHHHHHH
Q 011044 465 TVESPIRESTQRKLLQ 480 (495)
Q Consensus 465 ~~~~p~~Rp~m~~v~~ 480 (495)
...+|.+||++.|+++
T Consensus 267 l~~dp~~Rps~~ell~ 282 (290)
T 1t4h_A 267 IRQNKDERYSIKDLLN 282 (290)
T ss_dssp SCSSGGGSCCHHHHHT
T ss_pred ccCChhhCCCHHHHhh
Confidence 9999999999999864
No 239
>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*
Probab=97.55 E-value=1.7e-05 Score=75.72 Aligned_cols=89 Identities=19% Similarity=0.199 Sum_probs=55.2
Q ss_pred ccccCCCcceeehhhhhhcccCCCCCccccCC---------CCCHHHHHHHHhCCCcceeeeccccccccccccchhhHH
Q 011044 384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNG---------EMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCM 454 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~---------~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~ 454 (495)
...+.++||||+|+++.|++||+.|......+ .......+....... ... .....+.
T Consensus 205 ~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~------~~~~~~~ 270 (327)
T 3lxl_A 205 NIFSRQSDVWSFGVVLYELFTYCDKSCSPSAEFLRMMGCERDVPALSRLLELLEEG--------QRL------PAPPACP 270 (327)
T ss_dssp CEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHCC----CCHHHHHHHHHHTT--------CCC------CCCTTCC
T ss_pred CCCChHHhHHHHHHHHHHHHhCCCCCccccchhhhhcccccccccHHHHHHHhhcc--------cCC------CCCCccc
Confidence 34567899999999999999999985432110 000001111111000 000 0011233
Q ss_pred HHHHHHHhhcCCCCccCchhHHHHHHHHHHHH
Q 011044 455 SFVFNLAMECTVESPIRESTQRKLLQDSQKLE 486 (495)
Q Consensus 455 ~~~~~~~~~C~~~~p~~Rp~m~~v~~~l~~i~ 486 (495)
..+.++...|.+.+|.+||++.|+++.|+.+.
T Consensus 271 ~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~ 302 (327)
T 3lxl_A 271 AEVHELMKLCWAPSPQDRPSFSALGPQLDMLW 302 (327)
T ss_dssp HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHC-
T ss_pred HHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence 45788999999999999999999999998764
No 240
>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...
Probab=97.55 E-value=2.3e-05 Score=74.22 Aligned_cols=86 Identities=15% Similarity=0.293 Sum_probs=56.0
Q ss_pred ccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044 384 GRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM 462 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~ 462 (495)
...+.++||||+|+++.|++| |+.|....... ..+...+.. ..... .. ......+.++..
T Consensus 225 ~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~-~~~~~~~~~---~~~~~-----~~----------~~~~~~l~~li~ 285 (316)
T 2xir_A 225 RVYTIQSDVWSFGVLLWEIFSLGASPYPGVKID-EEFCRRLKE---GTRMR-----AP----------DYTTPEMYQTML 285 (316)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCCS-HHHHHHHHH---TCCCC-----CC----------TTCCHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHhCCCCCCcccchh-HHHHHHhcc---CccCC-----CC----------CCCCHHHHHHHH
Confidence 345678999999999999998 88886432111 111111111 11000 00 011223677889
Q ss_pred hcCCCCccCchhHHHHHHHHHHHHHH
Q 011044 463 ECTVESPIRESTQRKLLQDSQKLETR 488 (495)
Q Consensus 463 ~C~~~~p~~Rp~m~~v~~~l~~i~~~ 488 (495)
.|.+.+|.+||++.|+++.|+.+...
T Consensus 286 ~~l~~dp~~Rps~~ell~~L~~~~~~ 311 (316)
T 2xir_A 286 DCWHGEPSQRPTFSELVEHLGNLLQA 311 (316)
T ss_dssp HHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHcCCChhhCcCHHHHHHHHHHHHhh
Confidence 99999999999999999999987654
No 241
>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A
Probab=97.55 E-value=3.7e-05 Score=71.55 Aligned_cols=84 Identities=18% Similarity=0.306 Sum_probs=56.2
Q ss_pred ccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044 384 GRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM 462 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~ 462 (495)
...+.++||||+|+++.|++| |+.|.... +-............ ...+. .....+.++..
T Consensus 196 ~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~-----~~~~~~~~~~~~~~--~~~~~-------------~~~~~l~~li~ 255 (283)
T 3gen_A 196 SKFSSKSDIWAFGVLMWEIYSLGKMPYERF-----TNSETAEHIAQGLR--LYRPH-------------LASEKVYTIMY 255 (283)
T ss_dssp CCCSHHHHHHHHHHHHHHHHTTTCCTTTTS-----CHHHHHHHHHTTCC--CCCCT-------------TCCHHHHHHHH
T ss_pred CCCCchhhHHHHHHHHHHHHhCCCCCcccc-----ChhHHHHHHhcccC--CCCCC-------------cCCHHHHHHHH
Confidence 345678999999999999999 88886431 22222222211110 00010 11233778899
Q ss_pred hcCCCCccCchhHHHHHHHHHHHHH
Q 011044 463 ECTVESPIRESTQRKLLQDSQKLET 487 (495)
Q Consensus 463 ~C~~~~p~~Rp~m~~v~~~l~~i~~ 487 (495)
.|.+.+|.+||++.++++.|+.+..
T Consensus 256 ~~l~~~p~~Rps~~~ll~~L~~~~~ 280 (283)
T 3gen_A 256 SCWHEKADERPTFKILLSNILDVMD 280 (283)
T ss_dssp HTTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHccCChhHCcCHHHHHHHHHHHhh
Confidence 9999999999999999999988764
No 242
>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}
Probab=97.53 E-value=2.8e-05 Score=74.77 Aligned_cols=79 Identities=13% Similarity=0.208 Sum_probs=49.8
Q ss_pred ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044 384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME 463 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~ 463 (495)
+..+.++|||||||++.|++||+.|.... ..-...+............ +. .....+.++...
T Consensus 195 ~~~~~~~DiwslG~il~ell~g~~pf~~~----~~~~~~~~~~~~~~~~~~~-~~-------------~~~~~l~~li~~ 256 (343)
T 3dbq_A 195 SKISPKSDVWSLGCILYYMTYGKTPFQQI----INQISKLHAIIDPNHEIEF-PD-------------IPEKDLQDVLKC 256 (343)
T ss_dssp --CCHHHHHHHHHHHHHHHHHSSCTTTTC----CSHHHHHHHHHCTTSCCCC-CC-------------CSCHHHHHHHHH
T ss_pred cCCCchhhHHHHHHHHHHHHhCCCcchhh----hhHHHHHHHHhcCCcccCC-cc-------------cCCHHHHHHHHH
Confidence 45677899999999999999999996532 2222222222211100000 00 111236688899
Q ss_pred cCCCCccCchhHHHHHH
Q 011044 464 CTVESPIRESTQRKLLQ 480 (495)
Q Consensus 464 C~~~~p~~Rp~m~~v~~ 480 (495)
|...+|.+||++.|+++
T Consensus 257 ~L~~dp~~Rpt~~e~l~ 273 (343)
T 3dbq_A 257 CLKRDPKQRISIPELLA 273 (343)
T ss_dssp HTCSSTTTSCCHHHHHT
T ss_pred HcCCChhHCCCHHHHHh
Confidence 99999999999999964
No 243
>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*
Probab=97.52 E-value=3.2e-05 Score=72.17 Aligned_cols=83 Identities=17% Similarity=0.185 Sum_probs=52.5
Q ss_pred ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044 384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME 463 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~ 463 (495)
...+.++||||||+++.|++||..|... ..+.............. .... ...+.++...
T Consensus 193 ~~~~~~~DiwslG~il~el~~g~~~~~~----~~~~~~~~~~~~~~~~~---~~~~--------------~~~l~~li~~ 251 (289)
T 4fvq_A 193 KNLNLATDKWSFGTTLWEICSGGDKPLS----ALDSQRKLQFYEDRHQL---PAPK--------------AAELANLINN 251 (289)
T ss_dssp GGCCHHHHHHHHHHHHHHHHTTTCCTTT----TSCHHHHHHHHHTTCCC---CCCS--------------SCTTHHHHHH
T ss_pred CCCCchhHHHHHHHHHHHHHcCCCCCcc----ccchHHHHHHhhccCCC---CCCC--------------CHHHHHHHHH
Confidence 3456789999999999999997665322 22222211111111000 0000 1125678889
Q ss_pred cCCCCccCchhHHHHHHHHHHHHH
Q 011044 464 CTVESPIRESTQRKLLQDSQKLET 487 (495)
Q Consensus 464 C~~~~p~~Rp~m~~v~~~l~~i~~ 487 (495)
|.+.+|.+||++.|+++.|+.+-.
T Consensus 252 ~l~~dp~~Rps~~~ll~~l~~l~~ 275 (289)
T 4fvq_A 252 CMDYEPDHRPSFRAIIRDLNSLFT 275 (289)
T ss_dssp HSCSSGGGSCCHHHHHHHHHTCC-
T ss_pred HcCCChhHCcCHHHHHHHHHHhcC
Confidence 999999999999999999987643
No 244
>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...
Probab=97.52 E-value=4e-05 Score=71.50 Aligned_cols=84 Identities=18% Similarity=0.276 Sum_probs=56.2
Q ss_pred ccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044 384 GRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM 462 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~ 462 (495)
...+.++||||+|+++.|+++ |+.|..... ...+...+....... . ...+...+.++..
T Consensus 187 ~~~~~~~Di~slG~il~~ll~~g~~p~~~~~--~~~~~~~~~~~~~~~--------~----------~~~~~~~l~~li~ 246 (288)
T 3kfa_A 187 NKFSIKSDVWAFGVLLWEIATYGMSPYPGID--LSQVYELLEKDYRME--------R----------PEGCPEKVYELMR 246 (288)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC--GGGHHHHHHTTCCCC--------C----------CTTCCHHHHHHHH
T ss_pred CCCCchhhHHHHHHHHHHHHhCCCCCCCCCC--HHHHHHHHhccCCCC--------C----------CCCCCHHHHHHHH
Confidence 345678999999999999999 888864321 112222222211100 0 0112234778899
Q ss_pred hcCCCCccCchhHHHHHHHHHHHHH
Q 011044 463 ECTVESPIRESTQRKLLQDSQKLET 487 (495)
Q Consensus 463 ~C~~~~p~~Rp~m~~v~~~l~~i~~ 487 (495)
.|...+|.+||++.++++.|+.+..
T Consensus 247 ~~l~~dp~~Rps~~~~~~~l~~~~~ 271 (288)
T 3kfa_A 247 ACWQWNPSDRPSFAEIHQAFETMFQ 271 (288)
T ss_dssp HHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHhCCChhhCcCHHHHHHHHHHHHH
Confidence 9999999999999999999987654
No 245
>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*
Probab=97.51 E-value=2.2e-05 Score=73.81 Aligned_cols=88 Identities=22% Similarity=0.370 Sum_probs=55.7
Q ss_pred ccccCCCcceeehhhhhhcccCCCCCcccc----------CCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhH
Q 011044 384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIF----------NGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQC 453 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~----------~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~ 453 (495)
...+.++||||+|+++.|++||+.|....+ .+......+........... ....+
T Consensus 204 ~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~ 268 (302)
T 4e5w_A 204 SKFYIASDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVTRLVNTLKEGKRLP---------------CPPNC 268 (302)
T ss_dssp CEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCGGGHHHHHHHHHHTTCCCC---------------CCTTC
T ss_pred CCCCcchhHHHHHHHHHHHHHccCCCcchhhHHhhccCCcccccCHHHHHHHHhccCCCC---------------CCCCC
Confidence 345678999999999999999998843211 01111111111111110000 01122
Q ss_pred HHHHHHHHhhcCCCCccCchhHHHHHHHHHHHH
Q 011044 454 MSFVFNLAMECTVESPIRESTQRKLLQDSQKLE 486 (495)
Q Consensus 454 ~~~~~~~~~~C~~~~p~~Rp~m~~v~~~l~~i~ 486 (495)
...+.++...|.+.+|.+||++.+++++|+.+.
T Consensus 269 ~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~ll 301 (302)
T 4e5w_A 269 PDEVYQLMRKCWEFQPSNRTSFQNLIEGFEALL 301 (302)
T ss_dssp CHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHh
Confidence 344778999999999999999999999998763
No 246
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7
Probab=97.51 E-value=4.2e-05 Score=73.48 Aligned_cols=86 Identities=12% Similarity=0.201 Sum_probs=56.3
Q ss_pred ccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044 384 GRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM 462 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~ 462 (495)
+..+.++||||||+++.|++| |+.|....-. ...+...++...... . ...+...+..+..
T Consensus 249 ~~~~~~~Di~slG~il~el~t~g~~p~~~~~~-~~~~~~~~~~~~~~~--------~----------~~~~~~~l~~li~ 309 (344)
T 1rjb_A 249 GIYTIKSDVWSYGILLWEIFSLGVNPYPGIPV-DANFYKLIQNGFKMD--------Q----------PFYATEEIYIIMQ 309 (344)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCC-SHHHHHHHHTTCCCC--------C----------CTTCCHHHHHHHH
T ss_pred CCCChhHhHHHHHHHHHHHHcCCCCCcccCCc-HHHHHHHHhcCCCCC--------C----------CCCCCHHHHHHHH
Confidence 345678999999999999998 9888643211 112222222111100 0 0011234778899
Q ss_pred hcCCCCccCchhHHHHHHHHHHHHHH
Q 011044 463 ECTVESPIRESTQRKLLQDSQKLETR 488 (495)
Q Consensus 463 ~C~~~~p~~Rp~m~~v~~~l~~i~~~ 488 (495)
.|...+|.+||++.++++.|+.+...
T Consensus 310 ~~l~~dp~~Rps~~~l~~~l~~~~~~ 335 (344)
T 1rjb_A 310 SCWAFDSRKRPSFPNLTSFLGCQLAD 335 (344)
T ss_dssp HHTCSSGGGSCCHHHHHHHHHHHC--
T ss_pred HHcCCCchhCcCHHHHHHHHHHHHHH
Confidence 99999999999999999999887544
No 247
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*
Probab=97.50 E-value=3.1e-05 Score=75.91 Aligned_cols=78 Identities=13% Similarity=0.209 Sum_probs=50.1
Q ss_pred cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhc
Q 011044 385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMEC 464 (495)
Q Consensus 385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C 464 (495)
..+.++|||||||++.|+++|+.|.... ..-...+..........-. +. .....+.++...|
T Consensus 243 ~~~~~~DiwSlGvil~ell~G~~Pf~~~----~~~~~~~~~~~~~~~~~~~-~~-------------~~~~~~~~li~~~ 304 (390)
T 2zmd_A 243 KISPKSDVWSLGCILYYMTYGKTPFQQI----INQISKLHAIIDPNHEIEF-PD-------------IPEKDLQDVLKCC 304 (390)
T ss_dssp -CCHHHHHHHHHHHHHHHHHSSCTTTTC----CCHHHHHHHHHCTTSCCCC-CC-------------CSCHHHHHHHHHH
T ss_pred CCCChhhHHHHHHHHHHHHHCCCcchhh----hHHHHHHHHHhCccccCCC-Cc-------------cchHHHHHHHHHH
Confidence 4677899999999999999999996432 2222223222221110000 00 0112366788999
Q ss_pred CCCCccCchhHHHHHH
Q 011044 465 TVESPIRESTQRKLLQ 480 (495)
Q Consensus 465 ~~~~p~~Rp~m~~v~~ 480 (495)
...+|.+||++.|+++
T Consensus 305 L~~dP~~Rps~~ell~ 320 (390)
T 2zmd_A 305 LKRDPKQRISIPELLA 320 (390)
T ss_dssp TCSSTTTSCCHHHHHT
T ss_pred cccChhhCCCHHHHhh
Confidence 9999999999999964
No 248
>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*
Probab=97.49 E-value=4.3e-05 Score=79.82 Aligned_cols=85 Identities=15% Similarity=0.195 Sum_probs=57.7
Q ss_pred CccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044 383 EGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA 461 (495)
Q Consensus 383 ~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~ 461 (495)
....+.++|||||||++.|++| |+.|.... +-............... ...+...+.++.
T Consensus 546 ~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~-----~~~~~~~~i~~~~~~~~---------------p~~~~~~l~~li 605 (635)
T 4fl3_A 546 YYKFSSKSDVWSFGVLMWEAFSYGQKPYRGM-----KGSEVTAMLEKGERMGC---------------PAGCPREMYDLM 605 (635)
T ss_dssp HCCCCHHHHHHHHHHHHHHHHTTTCCSSTTC-----CHHHHHHHHHTTCCCCC---------------CTTCCHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC-----CHHHHHHHHHcCCCCCC---------------CCCCCHHHHHHH
Confidence 3456778999999999999999 99996432 22222222222111100 112234477889
Q ss_pred hhcCCCCccCchhHHHHHHHHHHHHH
Q 011044 462 MECTVESPIRESTQRKLLQDSQKLET 487 (495)
Q Consensus 462 ~~C~~~~p~~Rp~m~~v~~~l~~i~~ 487 (495)
..|...+|.+||++.+|++.|+.+-.
T Consensus 606 ~~cl~~dP~~RPs~~~l~~~L~~~~~ 631 (635)
T 4fl3_A 606 NLCWTYDVENRPGFAAVELRLRNYYY 631 (635)
T ss_dssp HHHTCSSTTTSCCHHHHHHHHHHHHH
T ss_pred HHHcCCCHhHCcCHHHHHHHHHHHHH
Confidence 99999999999999999999987643
No 249
>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*
Probab=97.47 E-value=5.6e-05 Score=72.07 Aligned_cols=84 Identities=17% Similarity=0.311 Sum_probs=56.7
Q ss_pred ccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044 384 GRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM 462 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~ 462 (495)
+..+.++||||||+++.|++| |+.|... .+.....+......... . ...+...+.++..
T Consensus 220 ~~~~~~~Di~slG~il~ellt~g~~p~~~-----~~~~~~~~~~~~~~~~~-----~----------~~~~~~~l~~li~ 279 (327)
T 2yfx_A 220 GIFTSKTDTWSFGVLLWEIFSLGYMPYPS-----KSNQEVLEFVTSGGRMD-----P----------PKNCPGPVYRIMT 279 (327)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTSCCSSTT-----CCHHHHHHHHHTTCCCC-----C----------CTTCCHHHHHHHH
T ss_pred CCCCchhhHHHHHHHHHHHHcCCCCCCCC-----cCHHHHHHHHhcCCCCC-----C----------CCCCCHHHHHHHH
Confidence 345678999999999999998 8888542 12222222222211100 0 0012234778899
Q ss_pred hcCCCCccCchhHHHHHHHHHHHHH
Q 011044 463 ECTVESPIRESTQRKLLQDSQKLET 487 (495)
Q Consensus 463 ~C~~~~p~~Rp~m~~v~~~l~~i~~ 487 (495)
.|...+|.+||++.++++.++.+..
T Consensus 280 ~~l~~dp~~Rps~~~ll~~l~~~~~ 304 (327)
T 2yfx_A 280 QCWQHQPEDRPNFAIILERIEYCTQ 304 (327)
T ss_dssp HHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHhcCChhhCcCHHHHHHHHHHHhc
Confidence 9999999999999999999988764
No 250
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=97.45 E-value=3.8e-05 Score=78.61 Aligned_cols=83 Identities=22% Similarity=0.329 Sum_probs=56.5
Q ss_pred CccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044 383 EGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA 461 (495)
Q Consensus 383 ~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~ 461 (495)
.+..+.++|||||||++.|++| |+.|... ......+.......... ....+...+.++.
T Consensus 438 ~~~~~~~sDvwSlGv~l~el~t~g~~P~~~-----~~~~~~~~~i~~~~~~~---------------~~~~~~~~l~~li 497 (535)
T 2h8h_A 438 YGRFTIKSDVWSFGILLTELTTKGRVPYPG-----MVNREVLDQVERGYRMP---------------CPPECPESLHDLM 497 (535)
T ss_dssp HCCCCHHHHHHHHHHHHHHHTTTTCCSSTT-----CCHHHHHHHHHTTCCCC---------------CCTTCCHHHHHHH
T ss_pred cCCCCchhhHHHHHHHHHHHHhCCCCCCCC-----CCHHHHHHHHHcCCCCC---------------CCCCCCHHHHHHH
Confidence 3456778999999999999999 8888543 22222222221111000 0112334477889
Q ss_pred hhcCCCCccCchhHHHHHHHHHHH
Q 011044 462 MECTVESPIRESTQRKLLQDSQKL 485 (495)
Q Consensus 462 ~~C~~~~p~~Rp~m~~v~~~l~~i 485 (495)
..|...+|.+||++.++++.|+.+
T Consensus 498 ~~cl~~dP~~RPt~~~l~~~L~~~ 521 (535)
T 2h8h_A 498 CQCWRKEPEERPTFEYLQAFLEDY 521 (535)
T ss_dssp HHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred HHHcCCChhHCcCHHHHHHHHHHH
Confidence 999999999999999999999865
No 251
>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*
Probab=97.41 E-value=7.2e-05 Score=71.28 Aligned_cols=83 Identities=20% Similarity=0.349 Sum_probs=56.6
Q ss_pred cccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044 385 RVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME 463 (495)
Q Consensus 385 ~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~ 463 (495)
..+.++||||+|+++.|++| |+.|... .+.....+......... . ...+...+.++...
T Consensus 217 ~~~~~~Di~slG~il~ellt~g~~pf~~-----~~~~~~~~~~~~~~~~~-----~----------~~~~~~~l~~li~~ 276 (327)
T 1fvr_A 217 VYTTNSDVWSYGVLLWEIVSLGGTPYCG-----MTCAELYEKLPQGYRLE-----K----------PLNCDDEVYDLMRQ 276 (327)
T ss_dssp EECHHHHHHHHHHHHHHHHTTSCCTTTT-----CCHHHHHHHGGGTCCCC-----C----------CTTBCHHHHHHHHH
T ss_pred cCCchhcchHHHHHHHHHHcCCCCCCCC-----CcHHHHHHHhhcCCCCC-----C----------CCCCCHHHHHHHHH
Confidence 45678999999999999998 9998642 23333333222211000 0 00112347788999
Q ss_pred cCCCCccCchhHHHHHHHHHHHHH
Q 011044 464 CTVESPIRESTQRKLLQDSQKLET 487 (495)
Q Consensus 464 C~~~~p~~Rp~m~~v~~~l~~i~~ 487 (495)
|...+|.+||++.++++.|+.+..
T Consensus 277 ~l~~dp~~Rps~~ell~~L~~~~~ 300 (327)
T 1fvr_A 277 CWREKPYERPSFAQILVSLNRMLE 300 (327)
T ss_dssp HTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HccCChhhCcCHHHHHHHHHHHHH
Confidence 999999999999999999988754
No 252
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*
Probab=97.41 E-value=4.5e-05 Score=72.56 Aligned_cols=81 Identities=19% Similarity=0.259 Sum_probs=51.2
Q ss_pred CCccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044 382 REGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA 461 (495)
Q Consensus 382 ~~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~ 461 (495)
..+..+.++||||||+++.|++||+.|.... +-...++...... .+.+.. .......+.++.
T Consensus 214 ~~~~~~~~~Dv~slG~il~el~~g~~pf~~~-----~~~~~~~~~~~~~-----~~~~~~--------~~~~~~~l~~li 275 (321)
T 2c30_A 214 SRSLYATEVDIWSLGIMVIEMVDGEPPYFSD-----SPVQAMKRLRDSP-----PPKLKN--------SHKVSPVLRDFL 275 (321)
T ss_dssp TTCCBCTHHHHHHHHHHHHHHHHSSCTTTTS-----CHHHHHHHHHHSS-----CCCCTT--------GGGSCHHHHHHH
T ss_pred cCCCCCchhhHHHHHHHHHHHHhCCCCCCCC-----CHHHHHHHHhcCC-----CCCcCc--------cccCCHHHHHHH
Confidence 3455677899999999999999999996421 2222222211111 011100 001122366778
Q ss_pred hhcCCCCccCchhHHHHHH
Q 011044 462 MECTVESPIRESTQRKLLQ 480 (495)
Q Consensus 462 ~~C~~~~p~~Rp~m~~v~~ 480 (495)
..|...+|.+||++.|+++
T Consensus 276 ~~~l~~dp~~Rps~~ell~ 294 (321)
T 2c30_A 276 ERMLVRDPQERATAQELLD 294 (321)
T ss_dssp HHHSCSSTTTSCCHHHHHT
T ss_pred HHHccCChhhCcCHHHHhc
Confidence 8999999999999999975
No 253
>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*
Probab=97.41 E-value=5.1e-05 Score=71.83 Aligned_cols=79 Identities=13% Similarity=0.220 Sum_probs=50.4
Q ss_pred ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044 384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME 463 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~ 463 (495)
...+.++||||||+++.|++||+.|..... .-...+.......... .+ ...+...+.++...
T Consensus 214 ~~~~~~~Di~slG~il~el~~g~~pf~~~~----~~~~~~~~~~~~~~~~----~~----------~~~~~~~l~~li~~ 275 (313)
T 3cek_A 214 SKISPKSDVWSLGCILYYMTYGKTPFQQII----NQISKLHAIIDPNHEI----EF----------PDIPEKDLQDVLKC 275 (313)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHSSCTTTTCC----SHHHHHHHHHCTTSCC----CC----------CCCSCHHHHHHHHH
T ss_pred ccCCchHHHHHHHHHHHHHHhCCCchhhHH----HHHHHHHHHHhccccc----CC----------cccchHHHHHHHHH
Confidence 346678999999999999999999965322 2222222222211100 00 00112236678889
Q ss_pred cCCCCccCchhHHHHHH
Q 011044 464 CTVESPIRESTQRKLLQ 480 (495)
Q Consensus 464 C~~~~p~~Rp~m~~v~~ 480 (495)
|...+|.+||++.|+++
T Consensus 276 ~l~~dp~~Rps~~ell~ 292 (313)
T 3cek_A 276 CLKRDPKQRISIPELLA 292 (313)
T ss_dssp HTCSSTTTSCCHHHHHT
T ss_pred HccCCcccCcCHHHHhc
Confidence 99999999999999964
No 254
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition state, activation helix, serine/threonine-PR kinase; HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Probab=97.40 E-value=3.9e-05 Score=73.59 Aligned_cols=78 Identities=17% Similarity=0.298 Sum_probs=50.5
Q ss_pred cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhc
Q 011044 385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMEC 464 (495)
Q Consensus 385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C 464 (495)
..+.++||||||+++.|++||+.|.+.. +... ..+........ +.+. ...+...+.++...|
T Consensus 233 ~~~~~~Di~slG~il~el~tg~~p~~~~---~~~~-~~~~~~~~~~~-----~~~~---------~~~~~~~~~~li~~~ 294 (340)
T 3an0_A 233 GYSVKSDIWSLGITMIELAILRFPYDSW---GTPF-QQLKQVVEEPS-----PQLP---------ADKFSAEFVDFTSQC 294 (340)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTSCSSCCC---SCHH-HHHHHHHHSCC-----CCCC---------GGGSCHHHHHHHHHH
T ss_pred CCCchhhHHHHHHHHHHHHHCCCCCccc---cchH-HHHHHHhcCCC-----CCCC---------cccCCHHHHHHHHHH
Confidence 4567899999999999999999996532 1111 22222221110 0000 001223477888999
Q ss_pred CCCCccCchhHHHHHH
Q 011044 465 TVESPIRESTQRKLLQ 480 (495)
Q Consensus 465 ~~~~p~~Rp~m~~v~~ 480 (495)
...+|.+||++.|+++
T Consensus 295 l~~dp~~Rps~~ell~ 310 (340)
T 3an0_A 295 LKKNSKERPTYPELMQ 310 (340)
T ss_dssp TCSSGGGSCCHHHHTT
T ss_pred ccCCcccCcCHHHHhc
Confidence 9999999999999964
No 255
>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A
Probab=97.40 E-value=3.5e-05 Score=71.91 Aligned_cols=79 Identities=15% Similarity=0.294 Sum_probs=49.6
Q ss_pred ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044 384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME 463 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~ 463 (495)
...+.++||||+|+++.|++||+.|.+.. +..... +............. ......+.++...
T Consensus 188 ~~~~~~~Di~slG~il~~l~~g~~p~~~~---~~~~~~-~~~~~~~~~~~~~~--------------~~~~~~~~~li~~ 249 (290)
T 3fme_A 188 KGYSVKSDIWSLGITMIELAILRFPYDSW---GTPFQQ-LKQVVEEPSPQLPA--------------DKFSAEFVDFTSQ 249 (290)
T ss_dssp --CCHHHHHHHHHHHHHHHHHTSCSSCCC---SCHHHH-HHHHHHSCCCCCCT--------------TTSCHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHHHCCCCcccc---CchHHH-HHHHhccCCCCccc--------------ccCCHHHHHHHHH
Confidence 34567899999999999999999996531 112111 22221111100000 0112336788899
Q ss_pred cCCCCccCchhHHHHHH
Q 011044 464 CTVESPIRESTQRKLLQ 480 (495)
Q Consensus 464 C~~~~p~~Rp~m~~v~~ 480 (495)
|.+.+|.+||++.|+++
T Consensus 250 ~l~~~p~~Rpt~~e~l~ 266 (290)
T 3fme_A 250 CLKKNSKERPTYPELMQ 266 (290)
T ss_dssp HTCSSGGGSCCHHHHTT
T ss_pred HhhcChhhCcCHHHHHh
Confidence 99999999999999965
No 256
>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}
Probab=97.39 E-value=9.9e-05 Score=69.71 Aligned_cols=89 Identities=13% Similarity=0.122 Sum_probs=54.6
Q ss_pred hcCCCccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHH
Q 011044 379 EYGREGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVF 458 (495)
Q Consensus 379 ~~~~~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~ 458 (495)
|.......+.++||||||+++.|++||+.|.... +. ..+......... .+... .......+.
T Consensus 205 E~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~-----~~-~~~~~~~~~~~~---~~~~~---------~~~~~~~l~ 266 (309)
T 2h34_A 205 ERFSESHATYRADIYALTCVLYECLTGSPPYQGD-----QL-SVMGAHINQAIP---RPSTV---------RPGIPVAFD 266 (309)
T ss_dssp GGTCC----CCCHHHHHHHHHHHHHHSSCSSCSC-----HH-HHHHHHHHSCCC---CGGGT---------STTCCTHHH
T ss_pred HHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCc-----hH-HHHHHHhccCCC---Ccccc---------CCCCCHHHH
Confidence 3333455677899999999999999999996431 11 122222211110 00000 001122367
Q ss_pred HHHhhcCCCCccCch-hHHHHHHHHHHH
Q 011044 459 NLAMECTVESPIRES-TQRKLLQDSQKL 485 (495)
Q Consensus 459 ~~~~~C~~~~p~~Rp-~m~~v~~~l~~i 485 (495)
++...|...+|.+|| ++.++++.|+.+
T Consensus 267 ~li~~~l~~dP~~Rp~s~~~l~~~l~~~ 294 (309)
T 2h34_A 267 AVIARGMAKNPEDRYVTCGDLSAAAHAA 294 (309)
T ss_dssp HHHHHHTCSSGGGSCSSHHHHHHHHHHT
T ss_pred HHHHHhccCCHHHHHHhHHHHHHHHHHH
Confidence 789999999999999 999999999865
No 257
>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...
Probab=97.38 E-value=3.8e-05 Score=73.01 Aligned_cols=84 Identities=17% Similarity=0.366 Sum_probs=56.6
Q ss_pred ccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044 384 GRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM 462 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~ 462 (495)
+..+.++||||+|+++.|++| |+.|... .+.....+.......... ...+...+.++..
T Consensus 215 ~~~~~~~Di~slG~il~el~~~g~~p~~~-----~~~~~~~~~~~~~~~~~~---------------~~~~~~~l~~li~ 274 (322)
T 1p4o_A 215 GVFTTYSDVWSFGVVLWEIATLAEQPYQG-----LSNEQVLRFVMEGGLLDK---------------PDNCPDMLFELMR 274 (322)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTSCCTTTT-----SCHHHHHHHHHTTCCCCC---------------CTTCCHHHHHHHH
T ss_pred CCCCchhhHHHHHHHHHHHHhcCCCcccc-----CCHHHHHHHHHcCCcCCC---------------CCCCCHHHHHHHH
Confidence 345678999999999999999 7777542 233333333222221100 0112234778899
Q ss_pred hcCCCCccCchhHHHHHHHHHHHHH
Q 011044 463 ECTVESPIRESTQRKLLQDSQKLET 487 (495)
Q Consensus 463 ~C~~~~p~~Rp~m~~v~~~l~~i~~ 487 (495)
.|...+|.+||++.|+++.|+.+..
T Consensus 275 ~~l~~dp~~Rps~~e~l~~L~~~~~ 299 (322)
T 1p4o_A 275 MCWQYNPKMRPSFLEIISSIKEEME 299 (322)
T ss_dssp HHTCSSGGGSCCHHHHHHHHGGGSC
T ss_pred HHcCCCcccCcCHHHHHHHHHHhhc
Confidence 9999999999999999999987643
No 258
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Probab=97.36 E-value=5.4e-05 Score=72.93 Aligned_cols=79 Identities=22% Similarity=0.291 Sum_probs=50.6
Q ss_pred CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044 383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM 462 (495)
Q Consensus 383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~ 462 (495)
.+..+.++||||||+++.|++||+.|... .+....+........ +.... ......+.++..
T Consensus 227 ~~~~~~~~DiwslG~il~ell~g~~p~~~-----~~~~~~~~~~~~~~~-----~~~~~---------~~~~~~l~~li~ 287 (348)
T 1u5q_A 227 EGQYDGKVDVWSLGITCIELAERKPPLFN-----MNAMSALYHIAQNES-----PALQS---------GHWSEYFRNFVD 287 (348)
T ss_dssp SCCBCTHHHHHHHHHHHHHHHHSSCTTTT-----SCHHHHHHHHHHSCC-----CCCCC---------TTSCHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHhCCCCCCC-----CChHHHHHHHHhcCC-----CCCCC---------CCCCHHHHHHHH
Confidence 34567789999999999999999999532 122223322222111 11100 011123567888
Q ss_pred hcCCCCccCchhHHHHHH
Q 011044 463 ECTVESPIRESTQRKLLQ 480 (495)
Q Consensus 463 ~C~~~~p~~Rp~m~~v~~ 480 (495)
.|...+|.+||++.++++
T Consensus 288 ~~l~~dP~~Rps~~~ll~ 305 (348)
T 1u5q_A 288 SCLQKIPQDRPTSEVLLK 305 (348)
T ss_dssp HHTCSSGGGSCCHHHHTT
T ss_pred HHcccChhhCcCHHHHhh
Confidence 999999999999999964
No 259
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=97.35 E-value=0.00013 Score=71.68 Aligned_cols=102 Identities=7% Similarity=0.119 Sum_probs=61.6
Q ss_pred cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCC---C-cceeeeccc--ccccc---ccccchhhHHH
Q 011044 385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSI---S-VMEVVDANL--LSWKD---KHFMTKEQCMS 455 (495)
Q Consensus 385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~---~-~~~v~d~~l--~~~~~---~~~~~~~~~~~ 455 (495)
..+.++||||||+++.|++||+.|.......... ...+...... . ...+....- ..+.. ...........
T Consensus 199 ~~~~~~DiwSlG~il~el~tg~~Pf~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 277 (396)
T 4eut_A 199 KYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRN-KEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQV 277 (396)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCSEECTTCTTTC-HHHHHHHHHSCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHCCCCCCCCCcccch-HHHHHHHhcCCCcccchhheeccCCCcccCccCCcccccchHHHh
Confidence 4567899999999999999999997643322222 2333332211 1 111111100 00000 00011123445
Q ss_pred HHHHHHhhcCCCCccCchhHHHHHHHHHHHHH
Q 011044 456 FVFNLAMECTVESPIRESTQRKLLQDSQKLET 487 (495)
Q Consensus 456 ~~~~~~~~C~~~~p~~Rp~m~~v~~~l~~i~~ 487 (495)
.+..+...|.+.+|.+||++.|+++.++.+-.
T Consensus 278 ~l~~ll~~~L~~dP~~R~s~~e~l~~l~~il~ 309 (396)
T 4eut_A 278 LLTPVLANILEADQEKCWGFDQFFAETSDILH 309 (396)
T ss_dssp HHHHHHHHHSCCCTTTSCCHHHHHHHHHHHHT
T ss_pred hchHHHHHhhccChhhhccHHHHHHHHHHHhh
Confidence 57789999999999999999999999987753
No 260
>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...
Probab=97.34 E-value=3.5e-05 Score=71.37 Aligned_cols=76 Identities=16% Similarity=0.221 Sum_probs=50.0
Q ss_pred cCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhcCC
Q 011044 387 STNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECTV 466 (495)
Q Consensus 387 ~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~ 466 (495)
+.++||||+|+++.|++||+.|.+...........|........ . .......+.++...|..
T Consensus 186 ~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~----------~--------~~~~~~~~~~li~~~l~ 247 (276)
T 2yex_A 186 AEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLN----------P--------WKKIDSAPLALLHKILV 247 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCSCTTSHHHHHHHTTCTTST----------T--------GGGSCHHHHHHHHHHSC
T ss_pred CCcchHHHHHHHHHHHHhCCCCCCCCchHHHHHHHhhhcccccC----------c--------hhhcCHHHHHHHHHHCC
Confidence 55799999999999999999997643322222333332111000 0 00112236688999999
Q ss_pred CCccCchhHHHHHH
Q 011044 467 ESPIRESTQRKLLQ 480 (495)
Q Consensus 467 ~~p~~Rp~m~~v~~ 480 (495)
.+|.+||++.|+++
T Consensus 248 ~~p~~Rps~~~il~ 261 (276)
T 2yex_A 248 ENPSARITIPDIKK 261 (276)
T ss_dssp SSTTTSCCHHHHTT
T ss_pred CCchhCCCHHHHhc
Confidence 99999999999864
No 261
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=97.32 E-value=4.5e-05 Score=72.97 Aligned_cols=76 Identities=16% Similarity=0.196 Sum_probs=50.6
Q ss_pred cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhc
Q 011044 385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMEC 464 (495)
Q Consensus 385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C 464 (495)
..+.++||||+||++.||+||+.|.. + .+....+.......... +.. ..-..+.++...|
T Consensus 201 ~y~~~~DiwSlGvilyemltG~~PF~----~-~~~~~~~~~i~~~~~~~-----~~~----------~~s~~~~~li~~~ 260 (350)
T 4b9d_A 201 PYNNKSDIWALGCVLYELCTLKHAFE----A-GSMKNLVLKIISGSFPP-----VSL----------HYSYDLRSLVSQL 260 (350)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSSCSCC----C-SSHHHHHHHHHHTCCCC-----CCT----------TSCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHCCCCCC----C-cCHHHHHHHHHcCCCCC-----CCc----------cCCHHHHHHHHHH
Confidence 45668999999999999999999953 2 23334443333222110 100 1112356778899
Q ss_pred CCCCccCchhHHHHHH
Q 011044 465 TVESPIRESTQRKLLQ 480 (495)
Q Consensus 465 ~~~~p~~Rp~m~~v~~ 480 (495)
.+.+|.+||++.|+++
T Consensus 261 L~~dP~~R~s~~e~l~ 276 (350)
T 4b9d_A 261 FKRNPRDRPSVNSILE 276 (350)
T ss_dssp TCSSGGGSCCHHHHHT
T ss_pred ccCChhHCcCHHHHhc
Confidence 9999999999999864
No 262
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.32 E-value=0.00011 Score=63.60 Aligned_cols=90 Identities=9% Similarity=0.076 Sum_probs=43.6
Q ss_pred CchhccCCCCCCEEeCcCC-cCCcc----CCccccCCCCCcEEEccCCcccccCC----hhHhhcCCCCCEEEcccccCC
Q 011044 71 IPSELANLSSLQALDLSFN-WFYGS----IPSSIFNMSSLLSIYFNNNTLFGELP----PNFCNQMSNLESLFLKYNMFH 141 (495)
Q Consensus 71 ~~~~l~~l~~L~~L~L~~n-~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~~p----~~~~~~l~~L~~L~l~~n~l~ 141 (495)
+...+.+-+.|++|+|++| .|.+. +...+..-+.|+.|+|++|.+.+.-- ..+.. -+.|++|+|++|.|.
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~-N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIET-SPSLRVLNVESNFLT 111 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHH-CSSCCEEECCSSBCC
T ss_pred HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhc-CCccCeEecCCCcCC
Confidence 3344455667777777764 55432 33344555566666666666642211 11111 344555555555554
Q ss_pred cc----CCcccCCCCCCCEEEccc
Q 011044 142 GK----IPSTLSSCKQLRELSLSS 161 (495)
Q Consensus 142 ~~----~~~~l~~l~~L~~L~l~~ 161 (495)
.. +...+..-+.|++|+|++
T Consensus 112 ~~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 112 PELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHHHHHHHHTTTTCCCSEEECCC
T ss_pred HHHHHHHHHHHhhCCceeEEECCC
Confidence 32 222333334455555543
No 263
>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*
Probab=97.31 E-value=4.2e-05 Score=71.93 Aligned_cols=79 Identities=20% Similarity=0.280 Sum_probs=49.8
Q ss_pred ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044 384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME 463 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~ 463 (495)
...+.++||||+|+++.|++||+.|... .... ..+............. .+.....+.++...
T Consensus 191 ~~~~~~~DiwslG~il~ell~g~~pf~~----~~~~-~~~~~~~~~~~~~~~~-------------~~~~~~~~~~li~~ 252 (297)
T 3fxz_A 191 KAYGPKVDIWSLGIMAIEMIEGEPPYLN----ENPL-RALYLIATNGTPELQN-------------PEKLSAIFRDFLNR 252 (297)
T ss_dssp SCBCTHHHHHHHHHHHHHHHHSSCTTTT----SCHH-HHHHHHHHHCSCCCSC-------------GGGSCHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHhCCCCCCC----CCHH-HHHHHHHhCCCCCCCC-------------ccccCHHHHHHHHH
Confidence 4457789999999999999999999542 2221 1111111111000000 11112336678899
Q ss_pred cCCCCccCchhHHHHHH
Q 011044 464 CTVESPIRESTQRKLLQ 480 (495)
Q Consensus 464 C~~~~p~~Rp~m~~v~~ 480 (495)
|.+.+|.+||++.|+++
T Consensus 253 ~l~~dp~~Rps~~ell~ 269 (297)
T 3fxz_A 253 CLEMDVEKRGSAKELLQ 269 (297)
T ss_dssp HSCSSTTTSCCHHHHTT
T ss_pred HccCChhHCcCHHHHhh
Confidence 99999999999999964
No 264
>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}
Probab=97.29 E-value=7.5e-05 Score=70.69 Aligned_cols=80 Identities=16% Similarity=0.175 Sum_probs=50.1
Q ss_pred ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044 384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME 463 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~ 463 (495)
...+.++||||||+++.|++||+.|.+.. ..-...+.......... +... ......+.++...
T Consensus 204 ~~~~~~~Di~slG~il~~l~~g~~pf~~~----~~~~~~~~~~~~~~~~~-----~~~~--------~~~~~~l~~li~~ 266 (318)
T 2dyl_A 204 PDYDIRADVWSLGISLVELATGQFPYKNC----KTDFEVLTKVLQEEPPL-----LPGH--------MGFSGDFQSFVKD 266 (318)
T ss_dssp --CCTHHHHHHHHHHHHHHHHSSCTTTTC----CSHHHHHHHHHHSCCCC-----CCSS--------SCCCHHHHHHHHH
T ss_pred cCCccccchhhHHHHHHHHHhCCCCCCCC----CccHHHHHHHhccCCCC-----CCcc--------CCCCHHHHHHHHH
Confidence 44567899999999999999999996431 12222222222221100 0000 0112336778899
Q ss_pred cCCCCccCchhHHHHHH
Q 011044 464 CTVESPIRESTQRKLLQ 480 (495)
Q Consensus 464 C~~~~p~~Rp~m~~v~~ 480 (495)
|...+|.+||++.++++
T Consensus 267 ~l~~dp~~Rps~~~ll~ 283 (318)
T 2dyl_A 267 CLTKDHRKRPKYNKLLE 283 (318)
T ss_dssp HTCSCTTTSCCHHHHTT
T ss_pred HccCChhHCcCHHHHhh
Confidence 99999999999999964
No 265
>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*
Probab=97.28 E-value=3.8e-05 Score=73.23 Aligned_cols=82 Identities=13% Similarity=0.223 Sum_probs=48.5
Q ss_pred ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044 384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME 463 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~ 463 (495)
...+.++||||||+++.|++||+.|.+... .....+....... .+.+... ....+...+.++...
T Consensus 204 ~~~~~~~Di~slG~il~~l~~g~~pf~~~~----~~~~~~~~~~~~~-----~~~~~~~------~~~~~~~~l~~li~~ 268 (327)
T 3aln_A 204 QGYDVRSDVWSLGITLYELATGRFPYPKWN----SVFDQLTQVVKGD-----PPQLSNS------EEREFSPSFINFVNL 268 (327)
T ss_dssp --CCSHHHHHHHHHHHHHHHHSCCCSSCC-----------CCCCCSC-----CCCCCCC------SSCCCCHHHHHHHHH
T ss_pred CCCCchhhHHHHHHHHHHHHHCCCCCCCcc----hHHHHHHHHhcCC-----CCCCCCc------ccccCCHHHHHHHHH
Confidence 345678999999999999999999964311 1111111111110 0111000 001123347788999
Q ss_pred cCCCCccCchhHHHHHH
Q 011044 464 CTVESPIRESTQRKLLQ 480 (495)
Q Consensus 464 C~~~~p~~Rp~m~~v~~ 480 (495)
|...+|.+||++.++++
T Consensus 269 ~l~~dp~~Rps~~ell~ 285 (327)
T 3aln_A 269 CLTKDESKRPKYKELLK 285 (327)
T ss_dssp HTCSSGGGSCCHHHHTT
T ss_pred HhhCChhhCcCHHHHHh
Confidence 99999999999999954
No 266
>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}
Probab=97.27 E-value=8.4e-05 Score=69.27 Aligned_cols=77 Identities=16% Similarity=0.165 Sum_probs=49.6
Q ss_pred cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCC-cceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044 385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSIS-VMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME 463 (495)
Q Consensus 385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~-~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~ 463 (495)
..+.++||||+|+++.|+++|+.|... .+............ ....... .....+.++...
T Consensus 201 ~~~~~~Di~slG~il~~ll~g~~pf~~-----~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~li~~ 261 (285)
T 3is5_A 201 DVTFKCDIWSAGVVMYFLLTGCLPFTG-----TSLEEVQQKATYKEPNYAVECR--------------PLTPQAVDLLKQ 261 (285)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSSCSSCC-----SSHHHHHHHHHHCCCCCCC--C--------------CCCHHHHHHHHH
T ss_pred CCCcccCeehHHHHHHHHHhCCCCCCC-----CCHHHHHhhhccCCcccccccC--------------cCCHHHHHHHHH
Confidence 456789999999999999999999642 23323322221111 0000000 011236678899
Q ss_pred cCCCCccCchhHHHHHH
Q 011044 464 CTVESPIRESTQRKLLQ 480 (495)
Q Consensus 464 C~~~~p~~Rp~m~~v~~ 480 (495)
|...+|.+||++.|+++
T Consensus 262 ~L~~dP~~Rps~~e~l~ 278 (285)
T 3is5_A 262 MLTKDPERRPSAAQVLH 278 (285)
T ss_dssp HTCSCTTTSCCHHHHHT
T ss_pred HccCChhhCcCHHHHhc
Confidence 99999999999999864
No 267
>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}
Probab=97.25 E-value=0.00022 Score=67.55 Aligned_cols=102 Identities=7% Similarity=0.137 Sum_probs=60.3
Q ss_pred CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHh---CCC-cceeeeccc--cccccc---cccchhhH
Q 011044 383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLL---SIS-VMEVVDANL--LSWKDK---HFMTKEQC 453 (495)
Q Consensus 383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~---~~~-~~~v~d~~l--~~~~~~---~~~~~~~~ 453 (495)
....+.++||||||+++.|++||+.|........ .....+.... +.. ...+.+..- ..+... ........
T Consensus 197 ~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (319)
T 4euu_A 197 QKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPR-RNKEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGL 275 (319)
T ss_dssp CCCBCTTHHHHHHHHHHHHHHHSSCSEECTTCGG-GCHHHHHHHHHHCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHH
T ss_pred cCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCccc-hhHHHHHHHhcCCCcccchhhhcccCCccccCccCCcccccchhH
Confidence 3456789999999999999999999975432211 2222222222 211 222211110 000000 00111234
Q ss_pred HHHHHHHHhhcCCCCccCchhHHHHHHHHHHH
Q 011044 454 MSFVFNLAMECTVESPIRESTQRKLLQDSQKL 485 (495)
Q Consensus 454 ~~~~~~~~~~C~~~~p~~Rp~m~~v~~~l~~i 485 (495)
...+..+...|.+.+|.+||++.|+++...+.
T Consensus 276 ~~~l~~ll~~~L~~dP~~R~s~~ell~h~~d~ 307 (319)
T 4euu_A 276 QVLLTPVLANILEADQEKCWGFDQFFAETSDI 307 (319)
T ss_dssp HHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHH
T ss_pred HHHhHHHHHHhccCChhhhccHHHhhhccHHH
Confidence 44577889999999999999999998877654
No 268
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.24 E-value=0.00017 Score=62.50 Aligned_cols=42 Identities=24% Similarity=0.290 Sum_probs=17.9
Q ss_pred cCCCCCCCEEEcccCcCccccC----ccccCCCCCCEEEccCCCCC
Q 011044 148 LSSCKQLRELSLSSNYFSGTIP----KEIGNLTKLTRLNLRQNKLQ 189 (495)
Q Consensus 148 l~~l~~L~~L~l~~n~l~~~~~----~~l~~l~~L~~L~L~~n~l~ 189 (495)
+..-+.|+.|+|++|.+..... ..+..-+.|++|+|++|.+.
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 3344455555555555442211 12222344555555555444
No 269
>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A
Probab=97.23 E-value=6.9e-05 Score=70.01 Aligned_cols=88 Identities=10% Similarity=-0.002 Sum_probs=54.2
Q ss_pred cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhc
Q 011044 385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMEC 464 (495)
Q Consensus 385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C 464 (495)
..+.++||||||+++.|++||+.|....-... ........+.................+.++...|
T Consensus 178 ~~~~~~Di~slG~il~elltg~~Pf~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~ 243 (286)
T 3uqc_A 178 DANPQDDIRGIGASLYALLVNRWPLPEAGVRS--------------GLAPAERDTAGQPIEPADIDRDIPFQISAVAARS 243 (286)
T ss_dssp TCCHHHHHHHHHHHHHHHHHSEECSCCCSBCC--------------CSEECCBCTTSCBCCHHHHCTTSCHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHHHCCCCCCcCCcch--------------hhHHHHHHhccCCCChhhcccCCCHHHHHHHHHH
Confidence 45778999999999999999999965321100 0000000000000000000011233477889999
Q ss_pred CCCCccCchhHHHHHHHHHHHHH
Q 011044 465 TVESPIRESTQRKLLQDSQKLET 487 (495)
Q Consensus 465 ~~~~p~~Rp~m~~v~~~l~~i~~ 487 (495)
.+.+|.+| ++.|+++.|+.+..
T Consensus 244 l~~dP~~R-s~~el~~~L~~~~~ 265 (286)
T 3uqc_A 244 VQGDGGIR-SASTLLNLMQQATA 265 (286)
T ss_dssp HCTTSSCC-CHHHHHHHHHHHHC
T ss_pred cccCCccC-CHHHHHHHHHHHhc
Confidence 99999999 99999999988753
No 270
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}
Probab=97.23 E-value=0.00012 Score=70.58 Aligned_cols=83 Identities=14% Similarity=0.111 Sum_probs=51.8
Q ss_pred CCccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044 382 REGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA 461 (495)
Q Consensus 382 ~~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~ 461 (495)
.....+.++||||||+++.|++||+.|.... ..-....+....... ....+ . .......+.++.
T Consensus 223 ~~~~~~~~~DiwslG~il~ell~g~~pf~~~----~~~~~~~~~i~~~~~-~~~~~-~----------~~~~~~~~~~li 286 (349)
T 2w4o_A 223 RGCAYGPEVDMWSVGIITYILLCGFEPFYDE----RGDQFMFRRILNCEY-YFISP-W----------WDEVSLNAKDLV 286 (349)
T ss_dssp TTCCCCTHHHHHHHHHHHHHHHHSSCTTCCT----TCHHHHHHHHHTTCC-CCCTT-T----------TTTSCHHHHHHH
T ss_pred cCCCCCcccchHHHHHHHHHHHhCCCCCCCC----cccHHHHHHHHhCCC-ccCCc-h----------hhhCCHHHHHHH
Confidence 3445677899999999999999999996431 111112222222111 00000 0 011223467889
Q ss_pred hhcCCCCccCchhHHHHHH
Q 011044 462 MECTVESPIRESTQRKLLQ 480 (495)
Q Consensus 462 ~~C~~~~p~~Rp~m~~v~~ 480 (495)
..|...+|.+||++.|+++
T Consensus 287 ~~~L~~dP~~Rpt~~e~l~ 305 (349)
T 2w4o_A 287 RKLIVLDPKKRLTTFQALQ 305 (349)
T ss_dssp HTTSCSSGGGSCCHHHHHH
T ss_pred HHHccCChhhCcCHHHHhc
Confidence 9999999999999999864
No 271
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=97.23 E-value=9e-05 Score=70.74 Aligned_cols=79 Identities=18% Similarity=0.201 Sum_probs=48.7
Q ss_pred ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044 384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME 463 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~ 463 (495)
...+.++||||+||++.||+||+.|.. +. +-.+.++...... .+.+.. ....-..+.++...
T Consensus 245 ~~y~~~~DiWSlGvilyeml~G~~PF~----~~-~~~~~~~~i~~~~-----~~~~~~--------~~~~s~~~~dli~~ 306 (346)
T 4fih_A 245 LPYGPEVDIWSLGIMVIEMVDGEPPYF----NE-PPLKAMKMIRDNL-----PPRLKN--------LHKVSPSLKGFLDR 306 (346)
T ss_dssp CCBCTHHHHHHHHHHHHHHHHSSCTTT----TS-CHHHHHHHHHHSS-----CCCCSC--------GGGSCHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHCCCCCC----Cc-CHHHHHHHHHcCC-----CCCCCc--------cccCCHHHHHHHHH
Confidence 345678999999999999999999953 22 2122222111110 011100 00111235677889
Q ss_pred cCCCCccCchhHHHHHH
Q 011044 464 CTVESPIRESTQRKLLQ 480 (495)
Q Consensus 464 C~~~~p~~Rp~m~~v~~ 480 (495)
|...+|.+||++.|+++
T Consensus 307 ~L~~dP~~R~ta~e~l~ 323 (346)
T 4fih_A 307 LLVRDPAQRATAAELLK 323 (346)
T ss_dssp HSCSSTTTSCCHHHHTT
T ss_pred HcCCChhHCcCHHHHhc
Confidence 99999999999999854
No 272
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=97.21 E-value=0.00013 Score=67.46 Aligned_cols=73 Identities=11% Similarity=0.221 Sum_probs=48.6
Q ss_pred cCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhcCC
Q 011044 387 STNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECTV 466 (495)
Q Consensus 387 ~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~ 466 (495)
+.++||||+||++.||+||+.|.+. .+.....+....... . ....+ -..+.++...|.+
T Consensus 190 ~~~~DiwSlGvily~lltg~~PF~~-----~~~~~~~~~i~~~~~-~-~p~~~--------------s~~~~~li~~~L~ 248 (275)
T 3hyh_A 190 GPEVDVWSCGVILYVMLCRRLPFDD-----ESIPVLFKNISNGVY-T-LPKFL--------------SPGAAGLIKRMLI 248 (275)
T ss_dssp CTHHHHHHHHHHHHHHHHSSCSSCC-----SSHHHHHHHHHHTCC-C-CCTTS--------------CHHHHHHHHHHSC
T ss_pred CChhhhHHHHHHHHHHHHCCCCCCC-----CCHHHHHHHHHcCCC-C-CCCCC--------------CHHHHHHHHHHcc
Confidence 4578999999999999999999542 233444433222111 0 00000 1125567889999
Q ss_pred CCccCchhHHHHHH
Q 011044 467 ESPIRESTQRKLLQ 480 (495)
Q Consensus 467 ~~p~~Rp~m~~v~~ 480 (495)
.+|.+||++.|+++
T Consensus 249 ~dP~~R~s~~eil~ 262 (275)
T 3hyh_A 249 VNPLNRISIHEIMQ 262 (275)
T ss_dssp SSGGGSCCHHHHHH
T ss_pred CChhHCcCHHHHHc
Confidence 99999999999864
No 273
>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*
Probab=97.20 E-value=7.2e-05 Score=70.24 Aligned_cols=80 Identities=23% Similarity=0.289 Sum_probs=49.4
Q ss_pred ccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCC---c-ceeeeccccccccccccchhhHHHHHHHHH
Q 011044 386 VSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSIS---V-MEVVDANLLSWKDKHFMTKEQCMSFVFNLA 461 (495)
Q Consensus 386 ~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~---~-~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~ 461 (495)
.+.++||||+|+++.|++||+.|...... .. ......... . ....++.+.. .....+.++.
T Consensus 204 ~~~~~Di~slG~il~~l~~g~~pf~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~li 268 (303)
T 2vwi_A 204 YDFKADIWSFGITAIELATGAAPYHKYPP--MK---VLMLTLQNDPPSLETGVQDKEMLK----------KYGKSFRKMI 268 (303)
T ss_dssp CCTHHHHHHHHHHHHHHHHSSCTTTTSCG--GG---HHHHHHTSSCCCTTC-----CCCC----------CCCHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHhCCCCCccCch--hh---HHHHHhccCCCccccccccchhhh----------hhhHHHHHHH
Confidence 46689999999999999999999653211 11 111111111 1 1111221111 1123467888
Q ss_pred hhcCCCCccCchhHHHHHH
Q 011044 462 MECTVESPIRESTQRKLLQ 480 (495)
Q Consensus 462 ~~C~~~~p~~Rp~m~~v~~ 480 (495)
..|...+|.+||++.++++
T Consensus 269 ~~~l~~dp~~Rps~~~ll~ 287 (303)
T 2vwi_A 269 SLCLQKDPEKRPTAAELLR 287 (303)
T ss_dssp HHHCCSSGGGSCCHHHHHT
T ss_pred HHHccCChhhCcCHHHHhh
Confidence 9999999999999999975
No 274
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=97.19 E-value=0.00015 Score=76.01 Aligned_cols=84 Identities=15% Similarity=0.323 Sum_probs=56.4
Q ss_pred ccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044 384 GRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM 462 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~ 462 (495)
...+.++||||||+++.|+++ |+.|.... +..+.+.......... + ...+...+.++..
T Consensus 567 ~~~~~~~DiwSlG~il~ellt~g~~Pf~~~-----~~~~~~~~i~~~~~~~-----~----------~~~~~~~l~~li~ 626 (656)
T 2j0j_A 567 RRFTSASDVWMFGVCMWEILMHGVKPFQGV-----KNNDVIGRIENGERLP-----M----------PPNCPPTLYSLMT 626 (656)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTSCCTTTTC-----CHHHHHHHHHHTCCCC-----C----------CTTCCHHHHHHHH
T ss_pred CCCCchhhHHHHHHHHHHHHHcCCCCCCCC-----CHHHHHHHHHcCCCCC-----C----------CccccHHHHHHHH
Confidence 345678999999999999997 88885421 2222222211111000 0 0122334778899
Q ss_pred hcCCCCccCchhHHHHHHHHHHHHH
Q 011044 463 ECTVESPIRESTQRKLLQDSQKLET 487 (495)
Q Consensus 463 ~C~~~~p~~Rp~m~~v~~~l~~i~~ 487 (495)
.|...+|.+||++.++++.|+.+..
T Consensus 627 ~~l~~dP~~RPs~~el~~~L~~il~ 651 (656)
T 2j0j_A 627 KCWAYDPSRRPRFTELKAQLSTILE 651 (656)
T ss_dssp HHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHcCCChhHCcCHHHHHHHHHHHHH
Confidence 9999999999999999999998754
No 275
>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*
Probab=97.19 E-value=4.9e-05 Score=72.42 Aligned_cols=76 Identities=16% Similarity=0.211 Sum_probs=49.4
Q ss_pred cCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhcCC
Q 011044 387 STNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECTV 466 (495)
Q Consensus 387 ~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~ 466 (495)
+.++||||+|+++.|++||+.|.+...........|......... .......+.++...|..
T Consensus 186 ~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~li~~~L~ 247 (323)
T 3tki_A 186 AEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNP------------------WKKIDSAPLALLHKILV 247 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCSCSSSCTTSHHHHHHHTTCTTSTT------------------GGGSCHHHHHHHHHHSC
T ss_pred CCcccHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHhcccccCCc------------------cccCCHHHHHHHHHHcc
Confidence 557999999999999999999975432222222233221111000 01112335678999999
Q ss_pred CCccCchhHHHHHH
Q 011044 467 ESPIRESTQRKLLQ 480 (495)
Q Consensus 467 ~~p~~Rp~m~~v~~ 480 (495)
.+|.+||++.|+++
T Consensus 248 ~dP~~R~t~~eil~ 261 (323)
T 3tki_A 248 ENPSARITIPDIKK 261 (323)
T ss_dssp SSTTTSCCHHHHTT
T ss_pred CChhhCcCHHHHhh
Confidence 99999999999854
No 276
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A
Probab=97.18 E-value=0.00011 Score=71.60 Aligned_cols=78 Identities=12% Similarity=0.000 Sum_probs=49.7
Q ss_pred cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhc
Q 011044 385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMEC 464 (495)
Q Consensus 385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C 464 (495)
..+.++|||||||++.|++||+.|....-... ....+.. . .......+.++...|
T Consensus 289 ~~~~~~DvwSlG~il~elltg~~Pf~~~~~~~-------------~~~~~~~-----~-------~~~~~~~~~~li~~~ 343 (377)
T 3byv_A 289 LMTFSFDAWALGLVIYWIWCADLPITKDAALG-------------GSEWIFR-----S-------CKNIPQPVRALLEGF 343 (377)
T ss_dssp ECCHHHHHHHHHHHHHHHHHSSCCC------C-------------CSGGGGS-----S-------CCCCCHHHHHHHHHH
T ss_pred cCChhhhHHHHHHHHHHHHHCCCCCccccccc-------------chhhhhh-----h-------ccCCCHHHHHHHHHH
Confidence 45678999999999999999999954211100 0000000 0 001123367788999
Q ss_pred CCCCccCchhHHHHHH--HHHHHHH
Q 011044 465 TVESPIRESTQRKLLQ--DSQKLET 487 (495)
Q Consensus 465 ~~~~p~~Rp~m~~v~~--~l~~i~~ 487 (495)
...+|.+||++.|+++ .++.++.
T Consensus 344 L~~dp~~Rpt~~e~l~hp~f~~~~~ 368 (377)
T 3byv_A 344 LRYPKEDRLLPLQAMETPEYEQLRT 368 (377)
T ss_dssp TCSSGGGCCCHHHHHTSHHHHHHHH
T ss_pred cCCCchhCCCHHHHhhChHHHHHHH
Confidence 9999999999999974 4444443
No 277
>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}
Probab=97.17 E-value=8.1e-05 Score=69.78 Aligned_cols=86 Identities=19% Similarity=0.257 Sum_probs=55.3
Q ss_pred ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044 384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME 463 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~ 463 (495)
...+.++||||+|+++.|++||+.|.+. . +-............... .... .......+.++...
T Consensus 187 ~~~~~~~Di~slG~~l~~ll~g~~pf~~----~-~~~~~~~~~~~~~~~~~-~~~~----------~~~~~~~l~~li~~ 250 (294)
T 4eqm_A 187 EATDECTDIYSIGIVLYEMLVGEPPFNG----E-TAVSIAIKHIQDSVPNV-TTDV----------RKDIPQSLSNVILR 250 (294)
T ss_dssp CCCCTTHHHHHHHHHHHHHHHSSCSSCS----S-CHHHHHHHHHSSCCCCH-HHHS----------CTTSCHHHHHHHHH
T ss_pred CCCCchHhHHHHHHHHHHHHhCCCCCCC----C-ChHHHHHHHhhccCCCc-chhc----------ccCCCHHHHHHHHH
Confidence 3456789999999999999999999643 2 22222222222221110 0000 01122347788999
Q ss_pred cCCCCccCch-hHHHHHHHHHHH
Q 011044 464 CTVESPIRES-TQRKLLQDSQKL 485 (495)
Q Consensus 464 C~~~~p~~Rp-~m~~v~~~l~~i 485 (495)
|.+.+|.+|| ++.++.+.|+.+
T Consensus 251 ~l~~dp~~R~~~~~~l~~~l~~~ 273 (294)
T 4eqm_A 251 ATEKDKANRYKTIQEMKDDLSSV 273 (294)
T ss_dssp HSCSSGGGSCSSHHHHHHHHHTS
T ss_pred HhcCCHhHccccHHHHHHHHHHH
Confidence 9999999998 899988888764
No 278
>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*
Probab=97.15 E-value=0.00014 Score=68.34 Aligned_cols=80 Identities=14% Similarity=0.202 Sum_probs=51.0
Q ss_pred CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044 383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM 462 (495)
Q Consensus 383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~ 462 (495)
....+.++||||||+++.|++||+.|.... +-................. .......+.++..
T Consensus 196 ~~~~~~~~Di~slG~il~~l~~g~~p~~~~-----~~~~~~~~~~~~~~~~~~~-------------~~~~~~~l~~li~ 257 (302)
T 2j7t_A 196 DTPYDYKADIWSLGITLIEMAQIEPPHHEL-----NPMRVLLKIAKSDPPTLLT-------------PSKWSVEFRDFLK 257 (302)
T ss_dssp STTTTTHHHHHHHHHHHHHHHHSSCTTTTS-----CHHHHHHHHHHSCCCCCSS-------------GGGSCHHHHHHHH
T ss_pred CCCCchhhhHHHHHHHHHHHhcCCCCCccC-----CHHHHHHHHhccCCcccCC-------------ccccCHHHHHHHH
Confidence 344567899999999999999999996432 2222222222111100000 0111234678889
Q ss_pred hcCCCCccCchhHHHHHH
Q 011044 463 ECTVESPIRESTQRKLLQ 480 (495)
Q Consensus 463 ~C~~~~p~~Rp~m~~v~~ 480 (495)
.|...+|.+||++.++++
T Consensus 258 ~~l~~dp~~Rps~~~ll~ 275 (302)
T 2j7t_A 258 IALDKNPETRPSAAQLLE 275 (302)
T ss_dssp HHSCSCTTTSCCHHHHTT
T ss_pred HHcccChhhCCCHHHHhc
Confidence 999999999999999954
No 279
>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*
Probab=97.14 E-value=7e-05 Score=70.36 Aligned_cols=84 Identities=8% Similarity=0.081 Sum_probs=48.7
Q ss_pred ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044 384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME 463 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~ 463 (495)
...+.++||||+|+++.|++||+.|........ + ...-...+..... .... .........+.++...
T Consensus 173 ~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~------~---~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~li~~ 239 (299)
T 3m2w_A 173 EKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLA------I---SPGMKTRIRMGQY-EFPN---PEWSEVSEEVKMLIRN 239 (299)
T ss_dssp CGGGGHHHHHHHHHHHHHHHHSSCSCCC----------------CCSCCSSCTTCC-SSCH---HHHTTSCHHHHHHHHH
T ss_pred ccCCchhhHHHHHHHHHHHHHCCCCCCCCcchh------h---hHHHHHHHhhccc-cCCc---hhcccCCHHHHHHHHH
Confidence 345678999999999999999999964321100 0 0000000000000 0000 0001223347788999
Q ss_pred cCCCCccCchhHHHHHH
Q 011044 464 CTVESPIRESTQRKLLQ 480 (495)
Q Consensus 464 C~~~~p~~Rp~m~~v~~ 480 (495)
|...+|.+||++.|+++
T Consensus 240 ~l~~dP~~Rps~~e~l~ 256 (299)
T 3m2w_A 240 LLKTEPTQRMTITEFMN 256 (299)
T ss_dssp HTCSSTTTSCCHHHHHT
T ss_pred HcccChhhCCCHHHHhc
Confidence 99999999999999965
No 280
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}
Probab=97.13 E-value=3.8e-05 Score=72.69 Aligned_cols=74 Identities=16% Similarity=0.200 Sum_probs=47.7
Q ss_pred cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhc
Q 011044 385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMEC 464 (495)
Q Consensus 385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C 464 (495)
..+.++||||||++++|+++|+.|... +. .|-. ..... ..+.+. ......+.++...|
T Consensus 231 ~~~~~~DiwslG~il~el~~g~~~~~~----~~---~~~~-~~~~~----~~~~~~----------~~~~~~l~~li~~~ 288 (311)
T 3p1a_A 231 SYGTAADVFSLGLTILEVACNMELPHG----GE---GWQQ-LRQGY----LPPEFT----------AGLSSELRSVLVMM 288 (311)
T ss_dssp CCSTHHHHHHHHHHHHHHHHTCCCCSS----HH---HHHH-HTTTC----CCHHHH----------TTSCHHHHHHHHHH
T ss_pred CCCchhhHHHHHHHHHHHHhCCCCCCC----cc---HHHH-HhccC----CCcccc----------cCCCHHHHHHHHHH
Confidence 467789999999999999999776321 11 1211 11110 011110 01223477889999
Q ss_pred CCCCccCchhHHHHHH
Q 011044 465 TVESPIRESTQRKLLQ 480 (495)
Q Consensus 465 ~~~~p~~Rp~m~~v~~ 480 (495)
.+.+|.+||++.|+++
T Consensus 289 L~~dP~~Rpt~~ell~ 304 (311)
T 3p1a_A 289 LEPDPKLRATAEALLA 304 (311)
T ss_dssp SCSSTTTSCCHHHHHT
T ss_pred cCCChhhCcCHHHHHh
Confidence 9999999999999874
No 281
>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*
Probab=97.12 E-value=0.00012 Score=67.92 Aligned_cols=78 Identities=8% Similarity=0.139 Sum_probs=50.8
Q ss_pred cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhc
Q 011044 385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMEC 464 (495)
Q Consensus 385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C 464 (495)
..+.++||||||+++.|++||+.|.... +-....+......... +. ..+...+.++...|
T Consensus 192 ~~~~~~Di~slG~il~~l~~g~~p~~~~-----~~~~~~~~i~~~~~~~-----~~----------~~~~~~l~~li~~~ 251 (279)
T 2w5a_A 192 SYNEKSDIWSLGCLLYELCALMPPFTAF-----SQKELAGKIREGKFRR-----IP----------YRYSDELNEIITRM 251 (279)
T ss_dssp -CCHHHHHHHHHHHHHHHHHSSCSSCCS-----SHHHHHHHHHHTCCCC-----CC----------TTSCHHHHHHHHHH
T ss_pred CCCchhhHHHHHHHHHHHHHCCCCCccc-----CHHHHHHHHhhccccc-----CC----------cccCHHHHHHHHHH
Confidence 4567899999999999999999986432 2222222211111100 00 01123477889999
Q ss_pred CCCCccCchhHHHHHHHH
Q 011044 465 TVESPIRESTQRKLLQDS 482 (495)
Q Consensus 465 ~~~~p~~Rp~m~~v~~~l 482 (495)
...+|.+||++.|+++.+
T Consensus 252 l~~~p~~Rps~~~ll~~~ 269 (279)
T 2w5a_A 252 LNLKDYHRPSVEEILENP 269 (279)
T ss_dssp TCSSGGGSCCHHHHHTST
T ss_pred cCCCcccCCCHHHHHhCh
Confidence 999999999999998654
No 282
>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}
Probab=97.09 E-value=0.00018 Score=67.90 Aligned_cols=80 Identities=24% Similarity=0.275 Sum_probs=50.3
Q ss_pred CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044 383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM 462 (495)
Q Consensus 383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~ 462 (495)
....+.++||||+|+++.|+++|+.|.... +-...+.............+ ......+.++..
T Consensus 199 ~~~~~~~~Di~slG~il~~l~~g~~p~~~~-----~~~~~~~~~~~~~~~~~~~~-------------~~~~~~l~~li~ 260 (314)
T 3com_A 199 EIGYNCVADIWSLGITAIEMAEGKPPYADI-----HPMRAIFMIPTNPPPTFRKP-------------ELWSDNFTDFVK 260 (314)
T ss_dssp SSCBCTTHHHHHHHHHHHHHHHSSCTTTTS-----CHHHHHHHHHHSCCCCCSSG-------------GGSCHHHHHHHH
T ss_pred CCCCCccccHHHHHHHHHHHHhCCCCCCCC-----ChHHHHHHHhcCCCcccCCc-------------ccCCHHHHHHHH
Confidence 345677899999999999999999996431 11111111111110000000 111234678899
Q ss_pred hcCCCCccCchhHHHHHH
Q 011044 463 ECTVESPIRESTQRKLLQ 480 (495)
Q Consensus 463 ~C~~~~p~~Rp~m~~v~~ 480 (495)
.|...+|.+||++.++++
T Consensus 261 ~~l~~dp~~Rpt~~~ll~ 278 (314)
T 3com_A 261 QCLVKSPEQRATATQLLQ 278 (314)
T ss_dssp HHTCSCTTTSCCHHHHTT
T ss_pred HHccCChhhCcCHHHHHh
Confidence 999999999999999964
No 283
>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}
Probab=97.09 E-value=0.00022 Score=68.32 Aligned_cols=80 Identities=10% Similarity=0.089 Sum_probs=50.9
Q ss_pred ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044 384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME 463 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~ 463 (495)
...+.++||||||+++.|++||+.|.... +-...+......... ...+. .......+.++...
T Consensus 251 ~~~~~~~DiwslG~il~el~~g~~pf~~~-----~~~~~~~~~~~~~~~-~~~~~-----------~~~~~~~~~~li~~ 313 (345)
T 3hko_A 251 ESYGPKCDAWSAGVLLHLLLMGAVPFPGV-----NDADTISQVLNKKLC-FENPN-----------YNVLSPLARDLLSN 313 (345)
T ss_dssp SCCCTHHHHHHHHHHHHHHHHSSCSSCCS-----SHHHHHHHHHHCCCC-TTSGG-----------GGGSCHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHCCCCCCCC-----ChHHHHHHHHhcccc-cCCcc-----------cccCCHHHHHHHHH
Confidence 44667899999999999999999996421 222222222221100 00000 00112336788899
Q ss_pred cCCCCccCchhHHHHHH
Q 011044 464 CTVESPIRESTQRKLLQ 480 (495)
Q Consensus 464 C~~~~p~~Rp~m~~v~~ 480 (495)
|.+.+|.+||++.|+++
T Consensus 314 ~l~~~p~~Rps~~~~l~ 330 (345)
T 3hko_A 314 LLNRNVDERFDAMRALQ 330 (345)
T ss_dssp HSCSCTTTSCCHHHHHH
T ss_pred HcCCChhHCCCHHHHhc
Confidence 99999999999999865
No 284
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*
Probab=97.08 E-value=0.00014 Score=71.12 Aligned_cols=29 Identities=10% Similarity=0.053 Sum_probs=24.9
Q ss_pred hHHHHHHHHHhhcCCCCccCchhHHHHHH
Q 011044 452 QCMSFVFNLAMECTVESPIRESTQRKLLQ 480 (495)
Q Consensus 452 ~~~~~~~~~~~~C~~~~p~~Rp~m~~v~~ 480 (495)
.....+.++...|...+|.+||++.|+++
T Consensus 363 ~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 391 (397)
T 1wak_A 363 EEAAGFTDFLLPMLELIPEKRATAAECLR 391 (397)
T ss_dssp HHHHHHHHHHGGGGCSSGGGSCCHHHHHT
T ss_pred hhHHHHHHHHHHHhccChhhcCCHHHHhh
Confidence 34556889999999999999999999864
No 285
>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}
Probab=97.08 E-value=0.00031 Score=67.79 Aligned_cols=32 Identities=19% Similarity=0.236 Sum_probs=26.1
Q ss_pred hcCCCccccCCCcceeehhhhhhcccCCCCCc
Q 011044 379 EYGREGRVSTNGDIYNFGIMIMETFTAKKPTD 410 (495)
Q Consensus 379 ~~~~~~~~~~~~dvysfgilllE~~tgk~p~~ 410 (495)
|.......+.++||||+|+++.|++||+.|..
T Consensus 229 E~~~~~~~~~~~DiwslG~il~ell~g~~pf~ 260 (360)
T 3llt_A 229 EVILNLGWDVSSDMWSFGCVLAELYTGSLLFR 260 (360)
T ss_dssp HHHTTCCCCTTHHHHHHHHHHHHHHHSSCSCC
T ss_pred HHHcCCCCCCccchHHHHHHHHHHHHCCCCCC
Confidence 33334556789999999999999999999964
No 286
>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*
Probab=97.07 E-value=0.00017 Score=71.79 Aligned_cols=81 Identities=17% Similarity=0.348 Sum_probs=52.0
Q ss_pred ccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044 384 GRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM 462 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~ 462 (495)
...+.++|||||||++.|++| |+.|.+.... .-..+++...... .. +.+ ........+.++..
T Consensus 214 ~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~---~~~~i~~~~~~~~--~~--~~~---------~~~~~~~~~~~li~ 277 (434)
T 2rio_A 214 RRLTRSIDIFSMGCVFYYILSKGKHPFGDKYS---RESNIIRGIFSLD--EM--KCL---------HDRSLIAEATDLIS 277 (434)
T ss_dssp CCCCTHHHHHHHHHHHHHHHTTSCCTTCSTTT---HHHHHHHTCCCCC--CC--TTC---------CCHHHHHHHHHHHH
T ss_pred cCcchhhhhHhHHHHHHHHHhCCCCCCCCchh---hHHHHhcCCCCcc--cc--ccc---------ccccchHHHHHHHH
Confidence 457788999999999999999 8888643221 1112222111110 00 000 11123345778999
Q ss_pred hcCCCCccCchhHHHHHH
Q 011044 463 ECTVESPIRESTQRKLLQ 480 (495)
Q Consensus 463 ~C~~~~p~~Rp~m~~v~~ 480 (495)
.|...+|.+||++.||++
T Consensus 278 ~~L~~dP~~Rps~~eil~ 295 (434)
T 2rio_A 278 QMIDHDPLKRPTAMKVLR 295 (434)
T ss_dssp HHTCSSGGGSCCHHHHHT
T ss_pred HHhhCChhhCCCHHHHHh
Confidence 999999999999999964
No 287
>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*
Probab=97.07 E-value=7.7e-05 Score=71.45 Aligned_cols=85 Identities=7% Similarity=0.077 Sum_probs=47.3
Q ss_pred CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044 383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM 462 (495)
Q Consensus 383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~ 462 (495)
....+.++||||+|+++.|++||+.|......... ..-............-.+ ........+.++..
T Consensus 203 ~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~--~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~li~ 269 (336)
T 3fhr_A 203 PEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAI--SPGMKRRIRLGQYGFPNP-----------EWSEVSEDAKQLIR 269 (336)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHSSCCC-----------------------CCCTT-----------TSTTCCHHHHHHHH
T ss_pred CCCCCchhhHHHHHHHHHHHHHCCCCCCCccchhh--hhhHHHhhhccccccCch-----------hhccCCHHHHHHHH
Confidence 34556789999999999999999999653222111 000010000000000000 00112334678889
Q ss_pred hcCCCCccCchhHHHHHH
Q 011044 463 ECTVESPIRESTQRKLLQ 480 (495)
Q Consensus 463 ~C~~~~p~~Rp~m~~v~~ 480 (495)
.|...+|.+||++.|+++
T Consensus 270 ~~L~~dP~~Rpt~~ell~ 287 (336)
T 3fhr_A 270 LLLKTDPTERLTITQFMN 287 (336)
T ss_dssp HHSCSSGGGSCCHHHHHH
T ss_pred HHCCCChhHCcCHHHHhc
Confidence 999999999999999975
No 288
>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}
Probab=97.07 E-value=0.00013 Score=68.42 Aligned_cols=75 Identities=11% Similarity=0.097 Sum_probs=48.4
Q ss_pred cCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhcCC
Q 011044 387 STNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECTV 466 (495)
Q Consensus 387 ~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~ 466 (495)
+.++||||+|+++.|+++|+.|... .....+......... ..-+ .......+.++...|.+
T Consensus 218 ~~~~Di~slG~~l~~l~~g~~pf~~-----~~~~~~~~~~~~~~~-~~~~-------------~~~~~~~l~~li~~~l~ 278 (298)
T 2zv2_A 218 GKALDVWAMGVTLYCFVFGQCPFMD-----ERIMCLHSKIKSQAL-EFPD-------------QPDIAEDLKDLITRMLD 278 (298)
T ss_dssp SHHHHHHHHHHHHHHHHHSSCSSCC-----SSHHHHHHHHHHCCC-CCCS-------------SSCCCHHHHHHHHHHTC
T ss_pred CchhhhHhHHHHHHHHHHCCCCCCC-----ccHHHHHHHHhcccC-CCCC-------------ccccCHHHHHHHHHHhh
Confidence 5578999999999999999999642 122233322211111 0000 00112336788999999
Q ss_pred CCccCchhHHHHHH
Q 011044 467 ESPIRESTQRKLLQ 480 (495)
Q Consensus 467 ~~p~~Rp~m~~v~~ 480 (495)
.+|.+||++.|+++
T Consensus 279 ~dp~~R~s~~e~l~ 292 (298)
T 2zv2_A 279 KNPESRIVVPEIKL 292 (298)
T ss_dssp SCTTTSCCHHHHTT
T ss_pred cChhhCCCHHHHhc
Confidence 99999999999853
No 289
>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}
Probab=97.07 E-value=7.8e-05 Score=69.71 Aligned_cols=77 Identities=18% Similarity=0.214 Sum_probs=48.5
Q ss_pred ccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhcC
Q 011044 386 VSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECT 465 (495)
Q Consensus 386 ~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C~ 465 (495)
.+.++||||||+++.|++||+.|....-. .-....+...... .+.+. ......+.++...|.
T Consensus 202 ~~~~~Di~slG~il~~l~~g~~pf~~~~~---~~~~~~~~~~~~~-----~~~~~----------~~~~~~~~~li~~~l 263 (295)
T 2clq_A 202 YGKAADIWSLGCTIIEMATGKPPFYELGE---PQAAMFKVGMFKV-----HPEIP----------ESMSAEAKAFILKCF 263 (295)
T ss_dssp CSHHHHHHHHHHHHHHHHHTSCTTGGGSS---HHHHHHHHHHHCC-----CCCCC----------TTSCHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHHHHHHHCCCCccCCCc---hhHHHHhhccccc-----ccccc----------ccCCHHHHHHHHHHc
Confidence 46689999999999999999999653211 1111111111000 01110 011233667889999
Q ss_pred CCCccCchhHHHHHH
Q 011044 466 VESPIRESTQRKLLQ 480 (495)
Q Consensus 466 ~~~p~~Rp~m~~v~~ 480 (495)
..+|.+||++.++++
T Consensus 264 ~~dp~~Rps~~~ll~ 278 (295)
T 2clq_A 264 EPDPDKRACANDLLV 278 (295)
T ss_dssp CSSTTTSCCHHHHHT
T ss_pred cCChhhCCCHHHHhc
Confidence 999999999999864
No 290
>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}
Probab=97.06 E-value=0.00014 Score=67.44 Aligned_cols=76 Identities=13% Similarity=0.158 Sum_probs=45.5
Q ss_pred ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044 384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME 463 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~ 463 (495)
...+.++||||+|+++.|++||+.|.+..-.. ......... +..+ .......+.++...
T Consensus 187 ~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~-----~~~~~~~~~------~~~~----------~~~~~~~~~~li~~ 245 (278)
T 3cok_A 187 SAHGLESDVWSLGCMFYTLLIGRPPFDTDTVK-----NTLNKVVLA------DYEM----------PSFLSIEAKDLIHQ 245 (278)
T ss_dssp -----CTHHHHHHHHHHHHHHSSCSSCCCSCC----------CCSS------CCCC----------CTTSCHHHHHHHHH
T ss_pred CCCCchhhHHHHHHHHHHHHhCCCCCCChhHH-----HHHHHHhhc------ccCC----------ccccCHHHHHHHHH
Confidence 34567899999999999999999996532111 111100000 0000 00112336788999
Q ss_pred cCCCCccCchhHHHHHH
Q 011044 464 CTVESPIRESTQRKLLQ 480 (495)
Q Consensus 464 C~~~~p~~Rp~m~~v~~ 480 (495)
|...+|.+||++.++++
T Consensus 246 ~l~~dp~~Rps~~~~l~ 262 (278)
T 3cok_A 246 LLRRNPADRLSLSSVLD 262 (278)
T ss_dssp HSCSSGGGSCCHHHHTT
T ss_pred HcccCHhhCCCHHHHhc
Confidence 99999999999999864
No 291
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=97.05 E-value=0.00017 Score=70.91 Aligned_cols=84 Identities=10% Similarity=0.113 Sum_probs=52.3
Q ss_pred CCccccCCCcceeehhhhhhcccCCCCCccccCCCC--CHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHH
Q 011044 382 REGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEM--TLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFN 459 (495)
Q Consensus 382 ~~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~--~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~ 459 (495)
.....+.++|||||||++.||+||+.|......... .....+... . ...-.+ ........+.+
T Consensus 236 ~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~i~~~---~-~~~~~~-----------~~~~~s~~~~~ 300 (400)
T 1nxk_A 236 GPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMG---Q-YEFPNP-----------EWSEVSEEVKM 300 (400)
T ss_dssp CCCCSSSHHHHHHHHHHHHHHHHSSCSCCCCTTCSSCCSHHHHHHHT---C-CCCCTT-----------TTTTSCHHHHH
T ss_pred CCCCCCCcccHHHHHHHHHHHHhCCCCCCCCccccccHHHHHHHHcC---c-ccCCCc-----------ccccCCHHHHH
Confidence 345567789999999999999999999754322111 122222110 0 000000 00112233678
Q ss_pred HHhhcCCCCccCchhHHHHHH
Q 011044 460 LAMECTVESPIRESTQRKLLQ 480 (495)
Q Consensus 460 ~~~~C~~~~p~~Rp~m~~v~~ 480 (495)
+...|...+|.+||++.|+++
T Consensus 301 li~~~L~~dP~~Rpt~~eil~ 321 (400)
T 1nxk_A 301 LIRNLLKTEPTQRMTITEFMN 321 (400)
T ss_dssp HHHTTSCSSGGGSCCHHHHHH
T ss_pred HHHHHCCCChhHCcCHHHHhc
Confidence 899999999999999999965
No 292
>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...
Probab=97.05 E-value=0.00018 Score=66.79 Aligned_cols=87 Identities=11% Similarity=0.161 Sum_probs=54.1
Q ss_pred CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044 383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM 462 (495)
Q Consensus 383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~ 462 (495)
....+.++||||||+++.|++||+.|.... +-............. .++.. .......+.++..
T Consensus 185 ~~~~~~~~Di~slG~il~~l~~g~~p~~~~-----~~~~~~~~~~~~~~~--~~~~~----------~~~~~~~~~~li~ 247 (283)
T 3bhy_A 185 YEPLGLEADMWSIGVITYILLSGASPFLGE-----TKQETLTNISAVNYD--FDEEY----------FSNTSELAKDFIR 247 (283)
T ss_dssp TCCCCTHHHHHHHHHHHHHHHHSSCTTCCS-----SHHHHHHHHHTTCCC--CCHHH----------HTTCCHHHHHHHH
T ss_pred CCCCCcchhhhhHHHHHHHHHHCCCCCCCc-----chHHHHHHhHhcccC--Ccchh----------cccCCHHHHHHHH
Confidence 345677899999999999999999996431 222222221111100 00000 0112234778899
Q ss_pred hcCCCCccCchhHHHHHH--HHHHHH
Q 011044 463 ECTVESPIRESTQRKLLQ--DSQKLE 486 (495)
Q Consensus 463 ~C~~~~p~~Rp~m~~v~~--~l~~i~ 486 (495)
.|...+|.+||++.|+++ .++.++
T Consensus 248 ~~l~~dp~~Rps~~~~l~h~~~~~~~ 273 (283)
T 3bhy_A 248 RLLVKDPKRRMTIAQSLEHSWIKAIR 273 (283)
T ss_dssp TTSCSSGGGSCCHHHHHHCHHHHHHH
T ss_pred HHccCCHhHCcCHHHHHhCHHHHHHH
Confidence 999999999999999975 344443
No 293
>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*
Probab=97.05 E-value=0.00013 Score=68.69 Aligned_cols=78 Identities=17% Similarity=0.254 Sum_probs=50.7
Q ss_pred CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044 383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM 462 (495)
Q Consensus 383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~ 462 (495)
....+.++||||||+++.|++||+.|.... .-............ +.+.. .....+.++..
T Consensus 193 ~~~~~~~~Di~slG~il~~l~~g~~p~~~~-----~~~~~~~~~~~~~~-----~~~~~----------~~~~~l~~li~ 252 (303)
T 3a7i_A 193 QSAYDSKADIWSLGITAIELARGEPPHSEL-----HPMKVLFLIPKNNP-----PTLEG----------NYSKPLKEFVE 252 (303)
T ss_dssp TCCBCTHHHHHHHHHHHHHHHHSSCTTTTS-----CHHHHHHHHHHSCC-----CCCCS----------SCCHHHHHHHH
T ss_pred cCCCCchhhhHHHHHHHHHHccCCCCCCCc-----CHHHHHHHhhcCCC-----CCCcc----------ccCHHHHHHHH
Confidence 445667899999999999999999996432 11122211111110 00100 11233778899
Q ss_pred hcCCCCccCchhHHHHHH
Q 011044 463 ECTVESPIRESTQRKLLQ 480 (495)
Q Consensus 463 ~C~~~~p~~Rp~m~~v~~ 480 (495)
.|...+|.+||++.++++
T Consensus 253 ~~l~~dp~~Rps~~~ll~ 270 (303)
T 3a7i_A 253 ACLNKEPSFRPTAKELLK 270 (303)
T ss_dssp HHCCSSGGGSCCHHHHTT
T ss_pred HHcCCChhhCcCHHHHhh
Confidence 999999999999999965
No 294
>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...
Probab=97.05 E-value=0.00024 Score=65.83 Aligned_cols=77 Identities=13% Similarity=0.212 Sum_probs=50.2
Q ss_pred CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044 383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM 462 (495)
Q Consensus 383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~ 462 (495)
....+.++||||+|+++.|+++|+.|... .+.....+....... .+ .......+.++..
T Consensus 181 ~~~~~~~~Di~slG~il~~l~~g~~p~~~-----~~~~~~~~~~~~~~~------~~----------~~~~~~~~~~li~ 239 (279)
T 3fdn_A 181 GRMHDEKVDLWSLGVLCYEFLVGKPPFEA-----NTYQETYKRISRVEF------TF----------PDFVTEGARDLIS 239 (279)
T ss_dssp TCCCCTTHHHHHHHHHHHHHHHSSCTTCC-----SSHHHHHHHHHHTCC------CC----------CTTSCHHHHHHHH
T ss_pred cCCCCccchhHhHHHHHHHHHHCCCCCCC-----CcHHHHHHHHHhCCC------CC----------CCcCCHHHHHHHH
Confidence 34456789999999999999999999642 222222222111110 00 0011123667889
Q ss_pred hcCCCCccCchhHHHHHH
Q 011044 463 ECTVESPIRESTQRKLLQ 480 (495)
Q Consensus 463 ~C~~~~p~~Rp~m~~v~~ 480 (495)
.|...+|.+||++.|+++
T Consensus 240 ~~l~~~p~~Rps~~e~l~ 257 (279)
T 3fdn_A 240 RLLKHNPSQRPMLREVLE 257 (279)
T ss_dssp HHCCSSGGGSCCHHHHHH
T ss_pred HHhccChhhCCCHHHHhh
Confidence 999999999999999975
No 295
>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*
Probab=97.03 E-value=0.00016 Score=68.75 Aligned_cols=81 Identities=12% Similarity=0.147 Sum_probs=52.4
Q ss_pred ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044 384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME 463 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~ 463 (495)
...+.++||||||+++.|++||+.|...... ...+...+....... .+.. .......+.++...
T Consensus 194 ~~~~~~~Di~slG~il~~l~~g~~pf~~~~~-~~~~~~~~~~~~~~~-----~~~~----------~~~~~~~~~~li~~ 257 (322)
T 2ycf_A 194 AGYNRAVDCWSLGVILFICLSGYPPFSEHRT-QVSLKDQITSGKYNF-----IPEV----------WAEVSEKALDLVKK 257 (322)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHSSCSSCSTTC-SSCHHHHHHHTCCCC-----CHHH----------HTTSCHHHHHHHHH
T ss_pred CCCCchhhHHHHHHHHHHHHhCCCCCcccch-HHHHHHHHHhCcccc-----Cchh----------hhhcCHHHHHHHHH
Confidence 3456789999999999999999999754221 223333333211100 0000 01122347788999
Q ss_pred cCCCCccCchhHHHHHH
Q 011044 464 CTVESPIRESTQRKLLQ 480 (495)
Q Consensus 464 C~~~~p~~Rp~m~~v~~ 480 (495)
|...+|.+||++.++++
T Consensus 258 ~l~~dP~~Rps~~~~l~ 274 (322)
T 2ycf_A 258 LLVVDPKARFTTEEALR 274 (322)
T ss_dssp HSCSSTTTSCCHHHHHT
T ss_pred HcccCHhhCCCHHHHhh
Confidence 99999999999999963
No 296
>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}
Probab=97.00 E-value=0.00027 Score=67.14 Aligned_cols=79 Identities=14% Similarity=0.217 Sum_probs=48.3
Q ss_pred CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044 383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM 462 (495)
Q Consensus 383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~ 462 (495)
....+.++||||||+++.|++||+.|.... +-..-+........ +.+.. ......+.++..
T Consensus 208 ~~~~~~~~Di~slG~il~~l~~g~~p~~~~-----~~~~~~~~~~~~~~-----~~~~~---------~~~~~~l~~li~ 268 (326)
T 2x7f_A 208 DATYDFKSDLWSLGITAIEMAEGAPPLCDM-----HPMRALFLIPRNPA-----PRLKS---------KKWSKKFQSFIE 268 (326)
T ss_dssp ---CCTTHHHHHHHHHHHHHHHSSCTTTTS-----CHHHHHHHHHHSCC-----CCCSC---------SCSCHHHHHHHH
T ss_pred CcCCCccchHHHHHHHHHHHHhCCCCCCCC-----cHHHHHHHhhcCcc-----ccCCc---------cccCHHHHHHHH
Confidence 345677899999999999999999996431 11111111111110 01100 011223667888
Q ss_pred hcCCCCccCchhHHHHHH
Q 011044 463 ECTVESPIRESTQRKLLQ 480 (495)
Q Consensus 463 ~C~~~~p~~Rp~m~~v~~ 480 (495)
.|...+|.+||++.++++
T Consensus 269 ~~l~~dp~~Rps~~~ll~ 286 (326)
T 2x7f_A 269 SCLVKNHSQRPATEQLMK 286 (326)
T ss_dssp HHCCSSGGGSCCHHHHHT
T ss_pred HHhccChhhCCCHHHHhh
Confidence 999999999999999964
No 297
>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*
Probab=96.98 E-value=0.00027 Score=67.40 Aligned_cols=96 Identities=14% Similarity=0.195 Sum_probs=53.2
Q ss_pred CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcc---------eeeecccccccc---------
Q 011044 383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVM---------EVVDANLLSWKD--------- 444 (495)
Q Consensus 383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~---------~v~d~~l~~~~~--------- 444 (495)
....+.++||||+|+++.|++||+.|....- .......+......... ...+..-..+..
T Consensus 208 ~~~~~~~~Di~slG~il~el~~g~~pf~~~~--~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (339)
T 1z57_A 208 ALGWSQPCDVWSIGCILIEYYLGFTVFPTHD--SKEHLAMMERILGPLPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVS 285 (339)
T ss_dssp TSCCCTHHHHHHHHHHHHHHHHSSCSCCCSC--HHHHHHHHHHHHCSCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHH
T ss_pred CCCCCcchhhHHHHHHHHHHHhCCCCCCCCC--hHHHHHHHHHHhCCCCHHHHhhccchhHHhhccccccccccccchhh
Confidence 4456778999999999999999999964311 11111111111110000 000000000000
Q ss_pred -------ccccchhhHHHHHHHHHhhcCCCCccCchhHHHHHH
Q 011044 445 -------KHFMTKEQCMSFVFNLAMECTVESPIRESTQRKLLQ 480 (495)
Q Consensus 445 -------~~~~~~~~~~~~~~~~~~~C~~~~p~~Rp~m~~v~~ 480 (495)
........+...+.++...|...+|.+||++.|+++
T Consensus 286 ~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~ 328 (339)
T 1z57_A 286 RACKPLKEFMLSQDVEHERLFDLIQKMLEYDPAKRITLREALK 328 (339)
T ss_dssp HHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred hcCcchhhhcccchhhHHHHHHHHHHHhCcCcccccCHHHHhc
Confidence 000011234556889999999999999999999863
No 298
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=96.98 E-value=0.00021 Score=70.10 Aligned_cols=79 Identities=18% Similarity=0.206 Sum_probs=48.6
Q ss_pred ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044 384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME 463 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~ 463 (495)
...+.++||||+||++.||++|+.|.. +. +-.+.++...... .+.+... ...-..+..+...
T Consensus 322 ~~y~~~~DiWSlGvilyeml~G~~PF~----~~-~~~~~~~~i~~~~-----~~~~~~~--------~~~s~~~~dli~~ 383 (423)
T 4fie_A 322 LPYGPEVDIWSLGIMVIEMVDGEPPYF----NE-PPLKAMKMIRDNL-----PPRLKNL--------HKVSPSLKGFLDR 383 (423)
T ss_dssp CCBCTHHHHHHHHHHHHHHHHSSCTTT----TS-CHHHHHHHHHHSC-----CCCCSCT--------TSSCHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHCCCCCC----Cc-CHHHHHHHHHcCC-----CCCCccc--------ccCCHHHHHHHHH
Confidence 345678999999999999999999953 22 2122222111110 0111000 0011225677889
Q ss_pred cCCCCccCchhHHHHHH
Q 011044 464 CTVESPIRESTQRKLLQ 480 (495)
Q Consensus 464 C~~~~p~~Rp~m~~v~~ 480 (495)
|...+|.+||++.|+++
T Consensus 384 ~L~~dP~~R~ta~ell~ 400 (423)
T 4fie_A 384 LLVRDPAQRATAAELLK 400 (423)
T ss_dssp HSCSSTTTSCCHHHHTT
T ss_pred HcCCChhHCcCHHHHhc
Confidence 99999999999999854
No 299
>2eue_A Carbon catabolite derepressing protein kinase; kinase domain; 2.20A {Saccharomyces cerevisiae} PDB: 3fam_A 3hyh_A 3dae_A 2fh9_A 3mn3_A
Probab=96.97 E-value=0.00017 Score=66.62 Aligned_cols=73 Identities=10% Similarity=0.209 Sum_probs=48.0
Q ss_pred cCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhcCC
Q 011044 387 STNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECTV 466 (495)
Q Consensus 387 ~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~ 466 (495)
+.++||||+|+++.|++||+.|.+. .+.....+....... .+ +. .....+.++...|.+
T Consensus 190 ~~~~Di~slG~il~~l~~g~~pf~~-----~~~~~~~~~~~~~~~-~~--~~-------------~~~~~~~~li~~~l~ 248 (275)
T 2eue_A 190 GPEVDVWSCGVILYVMLCRRLPFDD-----ESIPVLFKNISNGVY-TL--PK-------------FLSPGAAGLIKRMLI 248 (275)
T ss_dssp -THHHHHHHHHHHHHHHHSSCSSCC-----SSHHHHHHHHHHTCC-CC--CT-------------TSCHHHHHHHHHHSC
T ss_pred CcccchHHHHHHHHHHHhCCCCCCC-----CCHHHHHHHHHhCCC-CC--Cc-------------cCCHHHHHHHHHHhh
Confidence 5679999999999999999999643 223333322221110 00 00 111236678999999
Q ss_pred CCccCchhHHHHHH
Q 011044 467 ESPIRESTQRKLLQ 480 (495)
Q Consensus 467 ~~p~~Rp~m~~v~~ 480 (495)
.+|.+||++.|+++
T Consensus 249 ~dP~~Rps~~e~l~ 262 (275)
T 2eue_A 249 VNPLNRISIHEIMQ 262 (275)
T ss_dssp SSGGGSCCHHHHTT
T ss_pred cCHhHCCCHHHHhh
Confidence 99999999999864
No 300
>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*
Probab=96.96 E-value=0.00051 Score=65.83 Aligned_cols=88 Identities=16% Similarity=0.173 Sum_probs=49.2
Q ss_pred CCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeee-cccccc-ccc-cccchhhHHHHHHHHHhhcC
Q 011044 389 NGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVD-ANLLSW-KDK-HFMTKEQCMSFVFNLAMECT 465 (495)
Q Consensus 389 ~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d-~~l~~~-~~~-~~~~~~~~~~~~~~~~~~C~ 465 (495)
++||||+|+++.|++||+.|..... .....++.........-.+ ...... ... ...........+.++...|.
T Consensus 232 ~~Di~slG~il~~l~~g~~pf~~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L 307 (348)
T 2pml_X 232 KVDIWSLGICLYVMFYNVVPFSLKI----SLVELFNNIRTKNIEYPLDRNHFLYPLTNKKSTCSNNFLSNEDIDFLKLFL 307 (348)
T ss_dssp HHHHHHHHHHHHHHHHSSCSSCCSS----CSHHHHHHHTSCCCCCCCSSSSSTTTTCC--------CCCHHHHHHHHHHC
T ss_pred hhhHHHHHHHHHHHHhCCCCCCCCC----cHHHHHHHHhccCcCCccchhhhhccccccccccchhhcCHHHHHHHHHHc
Confidence 8999999999999999999965321 1122333222221100000 000000 000 00000112334778899999
Q ss_pred CCCccCchhHHHHHH
Q 011044 466 VESPIRESTQRKLLQ 480 (495)
Q Consensus 466 ~~~p~~Rp~m~~v~~ 480 (495)
..+|.+||++.|+++
T Consensus 308 ~~dP~~Rps~~e~l~ 322 (348)
T 2pml_X 308 RKNPAERITSEDALK 322 (348)
T ss_dssp CSSGGGSCCHHHHHT
T ss_pred cCChhhCCCHHHHhc
Confidence 999999999999964
No 301
>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*
Probab=96.96 E-value=0.0002 Score=66.57 Aligned_cols=81 Identities=12% Similarity=0.111 Sum_probs=51.0
Q ss_pred CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044 383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM 462 (495)
Q Consensus 383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~ 462 (495)
....+.++||||+|+++.|+++|+.|... .+-............ ....+. .......+.++..
T Consensus 181 ~~~~~~~~Di~slG~~l~~l~~g~~pf~~-----~~~~~~~~~~~~~~~-~~~~~~-----------~~~~~~~~~~li~ 243 (284)
T 3kk8_A 181 KDPYSKPVDIWACGVILYILLVGYPPFWD-----EDQHRLYAQIKAGAY-DYPSPE-----------WDTVTPEAKSLID 243 (284)
T ss_dssp TCCBCTHHHHHHHHHHHHHHHHSSCSSCC-----SSHHHHHHHHHHTCC-CCCTTT-----------TTTSCHHHHHHHH
T ss_pred CCCCCcccchHHHHHHHHHHHHCCCCCCC-----CchhHHHHHHHhccc-cCCchh-----------hcccCHHHHHHHH
Confidence 44567789999999999999999999542 122222222111110 000000 0011233678889
Q ss_pred hcCCCCccCchhHHHHHH
Q 011044 463 ECTVESPIRESTQRKLLQ 480 (495)
Q Consensus 463 ~C~~~~p~~Rp~m~~v~~ 480 (495)
.|...+|.+||++.|+++
T Consensus 244 ~~l~~dp~~Rps~~~~l~ 261 (284)
T 3kk8_A 244 SMLTVNPKKRITADQALK 261 (284)
T ss_dssp HHSCSSTTTSCCHHHHTT
T ss_pred HHcccChhhCCCHHHHhc
Confidence 999999999999999964
No 302
>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7
Probab=96.96 E-value=0.00018 Score=68.37 Aligned_cols=81 Identities=15% Similarity=0.195 Sum_probs=51.9
Q ss_pred CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044 383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM 462 (495)
Q Consensus 383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~ 462 (495)
....+.++||||+|+++.|++||+.|... .+-...++........ .+... .......+.++..
T Consensus 177 ~~~~~~~~DiwslG~il~~ll~g~~pf~~-----~~~~~~~~~i~~~~~~--~~~~~----------~~~~s~~~~~li~ 239 (321)
T 1tki_A 177 HDVVSTATDMWSLGTLVYVLLSGINPFLA-----ETNQQIIENIMNAEYT--FDEEA----------FKEISIEAMDFVD 239 (321)
T ss_dssp TCEECHHHHHHHHHHHHHHHHHSSCTTCC-----SSHHHHHHHHHHTCCC--CCHHH----------HTTSCHHHHHHHH
T ss_pred CCCCCchhhHHHHHHHHHHHHhCCCCCcC-----CCHHHHHHHHHcCCCC--CChhh----------hccCCHHHHHHHH
Confidence 34456789999999999999999999542 1222333322221110 00000 0011233678899
Q ss_pred hcCCCCccCchhHHHHHH
Q 011044 463 ECTVESPIRESTQRKLLQ 480 (495)
Q Consensus 463 ~C~~~~p~~Rp~m~~v~~ 480 (495)
.|...+|.+||++.|+++
T Consensus 240 ~~L~~dp~~Rpt~~e~l~ 257 (321)
T 1tki_A 240 RLLVKERKSRMTASEALQ 257 (321)
T ss_dssp TTSCSSGGGSCCHHHHHH
T ss_pred HHcCCChhHCcCHHHHhc
Confidence 999999999999999975
No 303
>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*
Probab=96.95 E-value=0.00029 Score=67.67 Aligned_cols=29 Identities=14% Similarity=0.210 Sum_probs=24.7
Q ss_pred CCccccCCCcceeehhhhhhcccCCCCCc
Q 011044 382 REGRVSTNGDIYNFGIMIMETFTAKKPTD 410 (495)
Q Consensus 382 ~~~~~~~~~dvysfgilllE~~tgk~p~~ 410 (495)
.....+.++||||+|+++.|++||+.|..
T Consensus 212 ~~~~~~~~~Di~slG~il~el~~g~~pf~ 240 (355)
T 2eu9_A 212 LELGWAQPCDVWSIGCILFEYYRGFTLFQ 240 (355)
T ss_dssp TTCCCCTHHHHHHHHHHHHHHHHSSCSCC
T ss_pred ecCCCCCccchHHHHHHHHHHHhCCCCCC
Confidence 34456778999999999999999999964
No 304
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*
Probab=96.95 E-value=0.00013 Score=70.77 Aligned_cols=85 Identities=13% Similarity=0.064 Sum_probs=50.8
Q ss_pred ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044 384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME 463 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~ 463 (495)
...+.++|||||||++.||+||+.|.......... .|.+ ............. .........+.++...
T Consensus 268 ~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~~~--~~~~----~~~~~~~~~~~~~------~~~~~~~~~~~~li~~ 335 (371)
T 3q60_A 268 ATFTHALNAWQLGLSIYRVWCLFLPFGLVTPGIKG--SWKR----PSLRVPGTDSLAF------GSCTPLPDFVKTLIGR 335 (371)
T ss_dssp EECCHHHHHHHHHHHHHHHHHSSCSTTBCCTTCTT--CCCB----CCTTSCCCCSCCC------TTSSCCCHHHHHHHHH
T ss_pred CCcCccccHHHHHHHHHHHHhCCCCCCCcCccccc--chhh----hhhhhccccccch------hhccCCCHHHHHHHHH
Confidence 45677899999999999999999997643221110 0000 0000000001000 0001223347788899
Q ss_pred cCCCCccCchhHHHHHH
Q 011044 464 CTVESPIRESTQRKLLQ 480 (495)
Q Consensus 464 C~~~~p~~Rp~m~~v~~ 480 (495)
|...+|.+||++.++++
T Consensus 336 ~L~~dP~~Rpt~~e~l~ 352 (371)
T 3q60_A 336 FLNFDRRRRLLPLEAME 352 (371)
T ss_dssp HTCSSTTTCCCHHHHTT
T ss_pred HcCCChhhCCCHHHHhc
Confidence 99999999999999953
No 305
>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*
Probab=96.94 E-value=0.0003 Score=65.48 Aligned_cols=79 Identities=11% Similarity=0.052 Sum_probs=50.8
Q ss_pred cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhc
Q 011044 385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMEC 464 (495)
Q Consensus 385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C 464 (495)
..+.++||||+|+++.|++||+.|... .+-....+......... + .. ........+.++...|
T Consensus 198 ~~~~~~Di~slG~~l~~l~~g~~p~~~-----~~~~~~~~~~~~~~~~~--~--~~--------~~~~~~~~~~~li~~~ 260 (287)
T 2wei_A 198 TYDEKCDVWSAGVILYILLSGTPPFYG-----KNEYDILKRVETGKYAF--D--LP--------QWRTISDDAKDLIRKM 260 (287)
T ss_dssp CCCTHHHHHHHHHHHHHHHHSSCSSCC-----SSHHHHHHHHHHCCCCC--C--SG--------GGTTSCHHHHHHHHHH
T ss_pred CCCCchhhHhHHHHHHHHHhCCCCCCC-----CCHHHHHHHHHcCCCCC--C--ch--------hhhhcCHHHHHHHHHH
Confidence 356789999999999999999999643 12222222222111100 0 00 0011123477889999
Q ss_pred CCCCccCchhHHHHHH
Q 011044 465 TVESPIRESTQRKLLQ 480 (495)
Q Consensus 465 ~~~~p~~Rp~m~~v~~ 480 (495)
...+|.+||++.|+++
T Consensus 261 l~~dp~~Rps~~ell~ 276 (287)
T 2wei_A 261 LTFHPSLRITATQCLE 276 (287)
T ss_dssp TCSSGGGSCCHHHHHH
T ss_pred cccChhhCcCHHHHhc
Confidence 9999999999999975
No 306
>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A
Probab=96.94 E-value=0.00028 Score=68.45 Aligned_cols=29 Identities=7% Similarity=0.030 Sum_probs=24.9
Q ss_pred hHHHHHHHHHhhcCCCCccCchhHHHHHH
Q 011044 452 QCMSFVFNLAMECTVESPIRESTQRKLLQ 480 (495)
Q Consensus 452 ~~~~~~~~~~~~C~~~~p~~Rp~m~~v~~ 480 (495)
.....+.++...|...+|.+||++.|+++
T Consensus 305 ~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 333 (373)
T 1q8y_A 305 DEAKEISDFLSPMLQLDPRKRADAGGLVN 333 (373)
T ss_dssp HHHHHHHHHHGGGGCSSTTTCBCHHHHHT
T ss_pred chHHHHHHHHHHHhccCccccCCHHHHhh
Confidence 34556889999999999999999999964
No 307
>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...
Probab=96.94 E-value=0.00082 Score=62.33 Aligned_cols=78 Identities=9% Similarity=0.100 Sum_probs=51.1
Q ss_pred CCccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044 382 REGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA 461 (495)
Q Consensus 382 ~~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~ 461 (495)
.....+.++|+||+|+++.|+++|+.|.+.. +.....+....... .+-. .....+.++.
T Consensus 185 ~~~~~~~~~Di~slG~il~~l~~g~~pf~~~-----~~~~~~~~~~~~~~------~~~~----------~~~~~~~~li 243 (284)
T 2vgo_A 185 EGKTHDEKVDLWCAGVLCYEFLVGMPPFDSP-----SHTETHRRIVNVDL------KFPP----------FLSDGSKDLI 243 (284)
T ss_dssp TTCCBCTTHHHHHHHHHHHHHHHSSCTTCCS-----SHHHHHHHHHTTCC------CCCT----------TSCHHHHHHH
T ss_pred ccCCCCcccchhhHHHHHHHHHHCCCCCCCC-----CHhHHHHHHhcccc------CCCC----------cCCHHHHHHH
Confidence 3445678899999999999999999996431 22222222222110 0000 0112366789
Q ss_pred hhcCCCCccCchhHHHHHH
Q 011044 462 MECTVESPIRESTQRKLLQ 480 (495)
Q Consensus 462 ~~C~~~~p~~Rp~m~~v~~ 480 (495)
..|...+|.+||++.++++
T Consensus 244 ~~~l~~~p~~Rps~~~ll~ 262 (284)
T 2vgo_A 244 SKLLRYHPPQRLPLKGVME 262 (284)
T ss_dssp HHHSCSSGGGSCCHHHHHT
T ss_pred HHHhhcCHhhCCCHHHHhh
Confidence 9999999999999999964
No 308
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=96.92 E-value=0.00032 Score=69.19 Aligned_cols=73 Identities=11% Similarity=-0.048 Sum_probs=48.8
Q ss_pred CCccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044 382 REGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA 461 (495)
Q Consensus 382 ~~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~ 461 (495)
.....+.++|||||||++.|++||+.|.......+ ..+..+... ......+.++.
T Consensus 290 ~~~~~~~~~DvwSlGvil~elltg~~Pf~~~~~~~-----------------~~~~~~~~~--------~~~~~~~~~li 344 (413)
T 3dzo_A 290 HPTLMTFAFDTWTLGLAIYWIWCADLPNTDDAALG-----------------GSEWIFRSC--------KNIPQPVRALL 344 (413)
T ss_dssp CCEEECHHHHHHHHHHHHHHHHHSSCCCCTTGGGS-----------------CSGGGGSSC--------CCCCHHHHHHH
T ss_pred cCcCCCchhhHHHHHHHHHHHHHCCCCCCCcchhh-----------------hHHHHHhhc--------ccCCHHHHHHH
Confidence 33456779999999999999999999964321100 011111000 01123477788
Q ss_pred hhcCCCCccCchhHHHHH
Q 011044 462 MECTVESPIRESTQRKLL 479 (495)
Q Consensus 462 ~~C~~~~p~~Rp~m~~v~ 479 (495)
..|...+|.+||++.+++
T Consensus 345 ~~~l~~dP~~Rpt~~~~l 362 (413)
T 3dzo_A 345 EGFLRYPKEDRLLPLQAM 362 (413)
T ss_dssp HHHTCSSGGGSCCHHHHT
T ss_pred HHHccCChhhCcCHHHHH
Confidence 899999999999998884
No 309
>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}
Probab=96.91 E-value=0.00026 Score=67.40 Aligned_cols=81 Identities=12% Similarity=0.220 Sum_probs=50.4
Q ss_pred CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044 383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM 462 (495)
Q Consensus 383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~ 462 (495)
....+.++||||+|+++.|++||+.|... . +-...+........ .. .... .......+.++..
T Consensus 191 ~~~~~~~~DiwslG~il~~ll~g~~pf~~----~-~~~~~~~~~~~~~~-~~-~~~~----------~~~~~~~~~~li~ 253 (326)
T 2y0a_A 191 YEPLGLEADMWSIGVITYILLSGASPFLG----D-TKQETLANVSAVNY-EF-EDEY----------FSNTSALAKDFIR 253 (326)
T ss_dssp TCCCCTHHHHHHHHHHHHHHHHSCCSSCC----S-SHHHHHHHHHHTCC-CC-CHHH----------HTTSCHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHCcCCCCC----C-CHHHHHHHHHhcCC-Cc-Cccc----------cccCCHHHHHHHH
Confidence 34466789999999999999999999542 1 22222222111110 00 0000 0011233667888
Q ss_pred hcCCCCccCchhHHHHHH
Q 011044 463 ECTVESPIRESTQRKLLQ 480 (495)
Q Consensus 463 ~C~~~~p~~Rp~m~~v~~ 480 (495)
.|...+|.+||++.|+++
T Consensus 254 ~~L~~dP~~Rpt~~e~l~ 271 (326)
T 2y0a_A 254 RLLVKDPKKRMTIQDSLQ 271 (326)
T ss_dssp HHSCSSGGGSCCHHHHHH
T ss_pred HHccCChhhCCCHHHHhc
Confidence 999999999999999965
No 310
>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*
Probab=96.90 E-value=0.00022 Score=67.95 Aligned_cols=81 Identities=16% Similarity=0.218 Sum_probs=50.2
Q ss_pred CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044 383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM 462 (495)
Q Consensus 383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~ 462 (495)
....+.++||||+|+++.|++||+.|... . +-............ .. .... .......+.++..
T Consensus 207 ~~~~~~~~DiwslG~il~~ll~g~~pf~~----~-~~~~~~~~i~~~~~-~~-~~~~----------~~~~~~~~~~li~ 269 (327)
T 3lm5_A 207 YDPITTATDMWNIGIIAYMLLTHTSPFVG----E-DNQETYLNISQVNV-DY-SEET----------FSSVSQLATDFIQ 269 (327)
T ss_dssp TCCCCTHHHHHHHHHHHHHHHHSSCSSCC----S-SHHHHHHHHHHTCC-CC-CTTT----------TTTSCHHHHHHHH
T ss_pred CCCCCchhhHHHHHHHHHHHHhCCCCCCC----C-CchHHHHHHHhccc-cc-Cchh----------hcccCHHHHHHHH
Confidence 44567789999999999999999999643 1 11111111111000 00 0000 0112233677899
Q ss_pred hcCCCCccCchhHHHHHH
Q 011044 463 ECTVESPIRESTQRKLLQ 480 (495)
Q Consensus 463 ~C~~~~p~~Rp~m~~v~~ 480 (495)
.|...+|.+||++.++++
T Consensus 270 ~~L~~dP~~Rpt~~~ll~ 287 (327)
T 3lm5_A 270 SLLVKNPEKRPTAEICLS 287 (327)
T ss_dssp HHSCSSGGGSCCHHHHTT
T ss_pred HHcCCChhhCcCHHHHhC
Confidence 999999999999999854
No 311
>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}
Probab=96.90 E-value=0.00029 Score=67.98 Aligned_cols=94 Identities=15% Similarity=0.089 Sum_probs=51.7
Q ss_pred ccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCC--cceeeecccc----------ccccccccchhhH
Q 011044 386 VSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSIS--VMEVVDANLL----------SWKDKHFMTKEQC 453 (495)
Q Consensus 386 ~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~--~~~v~d~~l~----------~~~~~~~~~~~~~ 453 (495)
.+.++||||||+++.|++||+.|....-. ...+..+++..-... ...-.++... .+...........
T Consensus 209 ~~~~~Di~slG~il~ell~g~~pf~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (360)
T 3e3p_A 209 YTTAVDIWSVGCIFAEMMLGEPIFRGDNS-AGQLHEIVRVLGCPSREVLRKLNPSHTDVDLYNSKGIPWSNVFSDHSLKD 287 (360)
T ss_dssp CCTHHHHHHHHHHHHHHHHSSCSSCCSSH-HHHHHHHHHHHCCCCHHHHHHHCTTCCCGGGGCCCCCCHHHHTTTCCCTT
T ss_pred CCcHHHHHHHHHHHHHHHhCCCCcCCCCh-HHHHHHHHHHcCCCCHHHHHhcccchhhccccccccCCcccccchhhccc
Confidence 57789999999999999999998643111 111222222111000 0000000000 0000000000113
Q ss_pred HHHHHHHHhhcCCCCccCchhHHHHHH
Q 011044 454 MSFVFNLAMECTVESPIRESTQRKLLQ 480 (495)
Q Consensus 454 ~~~~~~~~~~C~~~~p~~Rp~m~~v~~ 480 (495)
...+.++...|.+.+|.+||++.|+++
T Consensus 288 ~~~~~~li~~~L~~dP~~Rpt~~e~l~ 314 (360)
T 3e3p_A 288 AKEAYDLLSALLQYLPEERMKPYEALC 314 (360)
T ss_dssp HHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred cHHHHHHHHHHhccCccccCCHHHHhc
Confidence 456888999999999999999999964
No 312
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...
Probab=96.89 E-value=0.0001 Score=70.25 Aligned_cols=97 Identities=13% Similarity=0.125 Sum_probs=51.1
Q ss_pred ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcce-------eeeccccc---------cccc-c
Q 011044 384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVME-------VVDANLLS---------WKDK-H 446 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~-------v~d~~l~~---------~~~~-~ 446 (495)
...+.++||||+|+++.|++||+.|..........+....+..-.....+ -.++.+.. +... .
T Consensus 206 ~~~~~~~DiwslG~il~~ll~g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (330)
T 3nsz_A 206 QMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVH 285 (330)
T ss_dssp CCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTCCCCTHHHHHHCCCCCCCGGGGCC
T ss_pred CcCCchhhHHHHHHHHHHHHhCCCCcccCCchHHHHHHHHHhcCCchhhhHHHHhccccccchhhhhhhccccchhhhcc
Confidence 34567899999999999999999996432111011111111000000000 00110000 0000 0
Q ss_pred ccchhhHHHHHHHHHhhcCCCCccCchhHHHHHH
Q 011044 447 FMTKEQCMSFVFNLAMECTVESPIRESTQRKLLQ 480 (495)
Q Consensus 447 ~~~~~~~~~~~~~~~~~C~~~~p~~Rp~m~~v~~ 480 (495)
..........+.++...|...+|.+||++.|+++
T Consensus 286 ~~~~~~~~~~~~~li~~~L~~dP~~Rpta~e~l~ 319 (330)
T 3nsz_A 286 SENQHLVSPEALDFLDKLLRYDHQSRLTAREAME 319 (330)
T ss_dssp TTTGGGCCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred ccccccCCHHHHHHHHHHhcCCcccCCCHHHHhc
Confidence 0001112345778899999999999999999864
No 313
>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...
Probab=96.88 E-value=0.00021 Score=69.01 Aligned_cols=29 Identities=21% Similarity=0.417 Sum_probs=24.5
Q ss_pred CccccCCCcceeehhhhhhcccCCCCCcc
Q 011044 383 EGRVSTNGDIYNFGIMIMETFTAKKPTDE 411 (495)
Q Consensus 383 ~~~~~~~~dvysfgilllE~~tgk~p~~~ 411 (495)
....+.++||||+|+++.|++||+.|...
T Consensus 204 ~~~~~~~~Di~slG~il~~l~~g~~pf~~ 232 (360)
T 3eqc_A 204 GTHYSVQSDIWSMGLSLVEMAVGRYPIPP 232 (360)
T ss_dssp TCCCSHHHHHHHHHHHHHHHHHTSCCSSC
T ss_pred CCCCCchhhHHHHHHHHHHHHhCCCCCCC
Confidence 34566789999999999999999999653
No 314
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Probab=96.88 E-value=0.00036 Score=67.78 Aligned_cols=81 Identities=11% Similarity=0.120 Sum_probs=51.5
Q ss_pred CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044 383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM 462 (495)
Q Consensus 383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~ 462 (495)
....+.++||||||+++.||+||+.|... . +-...+........ ...+.. .......+.++..
T Consensus 262 ~~~~~~~~DiwslG~il~elltg~~pf~~----~-~~~~~~~~i~~~~~-~~~~~~-----------~~~~~~~~~~li~ 324 (373)
T 2x4f_A 262 YDFVSFPTDMWSVGVIAYMLLSGLSPFLG----D-NDAETLNNILACRW-DLEDEE-----------FQDISEEAKEFIS 324 (373)
T ss_dssp TCBCCHHHHHHHHHHHHHHHHHSSCTTCC----S-SHHHHHHHHHHTCC-CSCSGG-----------GTTSCHHHHHHHH
T ss_pred CCCCCcHHhHHHHHHHHHHHHhCCCCCCC----C-CHHHHHHHHHhccC-CCChhh-----------hccCCHHHHHHHH
Confidence 34566789999999999999999999542 1 22222222221110 000000 0011234678899
Q ss_pred hcCCCCccCchhHHHHHH
Q 011044 463 ECTVESPIRESTQRKLLQ 480 (495)
Q Consensus 463 ~C~~~~p~~Rp~m~~v~~ 480 (495)
.|...+|.+||++.|+++
T Consensus 325 ~~L~~dp~~Rps~~e~l~ 342 (373)
T 2x4f_A 325 KLLIKEKSWRISASEALK 342 (373)
T ss_dssp TTSCSSGGGSCCHHHHHH
T ss_pred HHcCCChhhCCCHHHHhc
Confidence 999999999999999975
No 315
>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*
Probab=96.87 E-value=0.00025 Score=65.56 Aligned_cols=79 Identities=13% Similarity=0.056 Sum_probs=49.8
Q ss_pred cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhc
Q 011044 385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMEC 464 (495)
Q Consensus 385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C 464 (495)
..+.++||||+|+++.|++||+.|.... +-............ ..... ........+.++...|
T Consensus 183 ~~~~~~Di~slG~~l~~l~~g~~p~~~~-----~~~~~~~~~~~~~~-~~~~~-----------~~~~~~~~~~~li~~~ 245 (277)
T 3f3z_A 183 LYGPECDEWSAGVMMYVLLCGYPPFSAP-----TDSEVMLKIREGTF-TFPEK-----------DWLNVSPQAESLIRRL 245 (277)
T ss_dssp CBCTTHHHHHHHHHHHHHHHSSCSSCCS-----SHHHHHHHHHHCCC-CCCHH-----------HHTTSCHHHHHHHHHH
T ss_pred cCCchhhehhHHHHHHHHHHCCCCCCCC-----CHHHHHHHHHhCCC-CCCch-----------hhhcCCHHHHHHHHHH
Confidence 3677899999999999999999996431 11122221111110 00000 0001223467888999
Q ss_pred CCCCccCchhHHHHHH
Q 011044 465 TVESPIRESTQRKLLQ 480 (495)
Q Consensus 465 ~~~~p~~Rp~m~~v~~ 480 (495)
.+.+|.+||++.++++
T Consensus 246 l~~dp~~R~s~~~~l~ 261 (277)
T 3f3z_A 246 LTKSPKQRITSLQALE 261 (277)
T ss_dssp TCSSTTTSCCHHHHTT
T ss_pred ccCChhhCcCHHHHhc
Confidence 9999999999999864
No 316
>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}
Probab=96.87 E-value=0.00029 Score=66.11 Aligned_cols=74 Identities=15% Similarity=0.177 Sum_probs=49.8
Q ss_pred ccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhcC
Q 011044 386 VSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECT 465 (495)
Q Consensus 386 ~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C~ 465 (495)
.+.++||||+|+++.|++||+.|.+. .+.....+....... .+ ...+...+.++...|.
T Consensus 190 ~~~~~Di~slG~il~~l~~g~~p~~~-----~~~~~~~~~i~~~~~------~~----------~~~~~~~l~~li~~~l 248 (305)
T 2wtk_C 190 SGFKVDIWSAGVTLYNITTGLYPFEG-----DNIYKLFENIGKGSY------AI----------PGDCGPPLSDLLKGML 248 (305)
T ss_dssp ESHHHHHHHHHHHHHHHHHSSCSCCC-----SSHHHHHHHHHHCCC------CC----------CSSSCHHHHHHHHHHT
T ss_pred CcchhhHHHHHHHHHHHHhCCCCCCC-----chHHHHHHHHhcCCC------CC----------CCccCHHHHHHHHHHc
Confidence 35689999999999999999999642 233333332221110 00 0012234668889999
Q ss_pred CCCccCchhHHHHHH
Q 011044 466 VESPIRESTQRKLLQ 480 (495)
Q Consensus 466 ~~~p~~Rp~m~~v~~ 480 (495)
..+|.+||++.|+++
T Consensus 249 ~~dp~~Rps~~~ll~ 263 (305)
T 2wtk_C 249 EYEPAKRFSIRQIRQ 263 (305)
T ss_dssp CSSTTTSCCHHHHHH
T ss_pred cCChhhCCCHHHHhc
Confidence 999999999999975
No 317
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=96.85 E-value=0.00022 Score=70.53 Aligned_cols=80 Identities=13% Similarity=0.169 Sum_probs=51.6
Q ss_pred cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhc
Q 011044 385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMEC 464 (495)
Q Consensus 385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C 464 (495)
..+.++||||+|+++.|++||+.|..... ....+...+........ +.. .......+.++...|
T Consensus 320 ~~~~~~DiwslG~il~~lltg~~pf~~~~-~~~~~~~~i~~~~~~~~-----~~~----------~~~~~~~~~~li~~~ 383 (419)
T 3i6u_A 320 GYNRAVDCWSLGVILFICLSGYPPFSEHR-TQVSLKDQITSGKYNFI-----PEV----------WAEVSEKALDLVKKL 383 (419)
T ss_dssp TTHHHHHHHHHHHHHHHHHHSSCSSCCCS-SSCCHHHHHHTTCCCCC-----HHH----------HTTSCHHHHHHHHHH
T ss_pred CCCchhhhHhHHHHHHHHHHCCCCCCCCc-chHHHHHHHhcCCCCCC-----chh----------hcccCHHHHHHHHHH
Confidence 45668999999999999999999965422 12333333322111000 000 011223467889999
Q ss_pred CCCCccCchhHHHHHH
Q 011044 465 TVESPIRESTQRKLLQ 480 (495)
Q Consensus 465 ~~~~p~~Rp~m~~v~~ 480 (495)
.+.+|.+||++.|+++
T Consensus 384 L~~dP~~Rps~~e~l~ 399 (419)
T 3i6u_A 384 LVVDPKARFTTEEALR 399 (419)
T ss_dssp SCSSTTTSCCHHHHHH
T ss_pred ccCChhHCcCHHHHhC
Confidence 9999999999999965
No 318
>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A
Probab=96.85 E-value=0.00041 Score=65.75 Aligned_cols=81 Identities=12% Similarity=0.217 Sum_probs=51.6
Q ss_pred CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044 383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM 462 (495)
Q Consensus 383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~ 462 (495)
....+.++||||+|+++.|++||+.|... .+-...+........ . .++... ......+.++..
T Consensus 192 ~~~~~~~~Di~slG~il~~l~~g~~pf~~-----~~~~~~~~~i~~~~~-~-~~~~~~----------~~~~~~~~~li~ 254 (321)
T 2a2a_A 192 YEPLGLEADMWSIGVITYILLSGASPFLG-----DTKQETLANITSVSY-D-FDEEFF----------SHTSELAKDFIR 254 (321)
T ss_dssp TCCCCTHHHHHHHHHHHHHHHHSCCSSCC-----SSHHHHHHHHHTTCC-C-CCHHHH----------TTCCHHHHHHHH
T ss_pred CCCCCCccccHHHHHHHHHHHHCCCCCCC-----CCHHHHHHHHHhccc-c-cChhhh----------cccCHHHHHHHH
Confidence 34567789999999999999999999642 122233322221110 0 011110 011233678899
Q ss_pred hcCCCCccCchhHHHHHH
Q 011044 463 ECTVESPIRESTQRKLLQ 480 (495)
Q Consensus 463 ~C~~~~p~~Rp~m~~v~~ 480 (495)
.|...+|.+||++.|+++
T Consensus 255 ~~l~~dp~~Rps~~e~l~ 272 (321)
T 2a2a_A 255 KLLVKETRKRLTIQEALR 272 (321)
T ss_dssp TTSCSSTTTSCCHHHHHH
T ss_pred HHcCCChhhCcCHHHHhc
Confidence 999999999999999964
No 319
>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=96.84 E-value=0.00025 Score=66.78 Aligned_cols=95 Identities=16% Similarity=0.096 Sum_probs=51.0
Q ss_pred ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCC----c-cee--eecccccccccc-ccchhhHHH
Q 011044 384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSIS----V-MEV--VDANLLSWKDKH-FMTKEQCMS 455 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~----~-~~v--~d~~l~~~~~~~-~~~~~~~~~ 455 (495)
...+.++||||+|+++.|++||+.|....- .......+....... . ... ....+....... .....+...
T Consensus 194 ~~~~~~~DiwslG~il~~l~~g~~pf~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (308)
T 3g33_A 194 STYATPVDMWSVGCIFAEMFRRKPLFCGNS--EADQLGKIFDLIGLPPEDDWPRDVSLPRGAFPPRGPRPVQSVVPEMEE 271 (308)
T ss_dssp SCCCSTHHHHHHHHHHHHTTTSSCSCCCSS--HHHHHHHHHHHHCCCCTTTSCSSCSSCGGGSCCCCCCCHHHHSCSCCH
T ss_pred CCCCchHHHHHHHHHHHHHHhCCCCCCCCC--HHHHHHHHHHHhCCCChhhccchhhccccccCCCCCCcHHHhCccccH
Confidence 446778999999999999999999954211 111111111111110 0 000 000000000000 000011223
Q ss_pred HHHHHHhhcCCCCccCchhHHHHHH
Q 011044 456 FVFNLAMECTVESPIRESTQRKLLQ 480 (495)
Q Consensus 456 ~~~~~~~~C~~~~p~~Rp~m~~v~~ 480 (495)
.+.++...|.+.+|.+||++.|+++
T Consensus 272 ~~~~li~~~L~~dP~~R~t~~e~l~ 296 (308)
T 3g33_A 272 SGAQLLLEMLTFNPHKRISAFRALQ 296 (308)
T ss_dssp HHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred HHHHHHHHHhcCCCccCCCHHHHhc
Confidence 4678899999999999999999864
No 320
>3zgw_A Maternal embryonic leucine zipper kinase; transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=96.84 E-value=0.0003 Score=67.56 Aligned_cols=74 Identities=15% Similarity=0.285 Sum_probs=49.2
Q ss_pred ccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhcC
Q 011044 386 VSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECT 465 (495)
Q Consensus 386 ~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C~ 465 (495)
.+.++||||+||++.|+++|+.|.+. .+.....+........ + +. . ....+..+...|.
T Consensus 187 ~~~~~DiwSlG~il~ell~g~~Pf~~-----~~~~~~~~~i~~~~~~-~--p~---~----------~s~~~~~li~~~L 245 (347)
T 3zgw_A 187 LGSEADVWSMGILLYVLMCGFLPFDD-----DNVMALYKKIMRGKYD-V--PK---W----------LSPSSILLLQQML 245 (347)
T ss_dssp -CCHHHHHHHHHHHHHHHHSSCSSCC-----SSHHHHHHHHHHTCCC-C--CT---T----------CCHHHHHHHHHHT
T ss_pred CCcHhHHHHHHHHHHHHHHCCCCCCC-----CCHHHHHHHHHcCCCC-C--CC---C----------CCHHHHHHHHHHc
Confidence 36679999999999999999999642 2333333333222110 0 00 0 1122567888999
Q ss_pred CCCccCchhHHHHHH
Q 011044 466 VESPIRESTQRKLLQ 480 (495)
Q Consensus 466 ~~~p~~Rp~m~~v~~ 480 (495)
..+|.+||++.|+++
T Consensus 246 ~~dP~~Rps~~eil~ 260 (347)
T 3zgw_A 246 QVDPKKRISMKNLLN 260 (347)
T ss_dssp CSSGGGSCCHHHHHT
T ss_pred ccCHhHCcCHHHHhc
Confidence 999999999999964
No 321
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Probab=96.84 E-value=0.00028 Score=68.77 Aligned_cols=32 Identities=16% Similarity=0.138 Sum_probs=26.0
Q ss_pred hcCCCccccCCCcceeehhhhhhcccCCCCCc
Q 011044 379 EYGREGRVSTNGDIYNFGIMIMETFTAKKPTD 410 (495)
Q Consensus 379 ~~~~~~~~~~~~dvysfgilllE~~tgk~p~~ 410 (495)
|.......+.++|||||||++.|++||+.|..
T Consensus 228 E~~~~~~~~~~~DiwSlG~il~elltg~~pf~ 259 (382)
T 2vx3_A 228 EVLLGMPYDLAIDMWSLGCILVEMHTGEPLFS 259 (382)
T ss_dssp HHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred HHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCC
Confidence 33334456788999999999999999999964
No 322
>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*
Probab=96.84 E-value=0.00016 Score=67.13 Aligned_cols=72 Identities=11% Similarity=0.137 Sum_probs=46.0
Q ss_pred ccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhcC
Q 011044 386 VSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECT 465 (495)
Q Consensus 386 ~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C~ 465 (495)
.+.++||||||+++.|+++|+.+.. .. . .|.. ....... .+.. .....+.++...|.
T Consensus 208 ~~~~~Di~slG~il~~l~~~~~~~~----~~-~--~~~~-~~~~~~~-----~~~~----------~~~~~~~~li~~~l 264 (289)
T 1x8b_A 208 HLPKADIFALALTVVCAAGAEPLPR----NG-D--QWHE-IRQGRLP-----RIPQ----------VLSQEFTELLKVMI 264 (289)
T ss_dssp THHHHHHHHHHHHHHHHTTCCCCCS----SS-H--HHHH-HHTTCCC-----CCSS----------CCCHHHHHHHHHHT
T ss_pred CCchhhHHHHHHHHHHHhcCCCCCc----ch-h--HHHH-HHcCCCC-----CCCc----------ccCHHHHHHHHHHh
Confidence 4468999999999999999987632 11 1 1111 1111110 0100 11233678889999
Q ss_pred CCCccCchhHHHHHH
Q 011044 466 VESPIRESTQRKLLQ 480 (495)
Q Consensus 466 ~~~p~~Rp~m~~v~~ 480 (495)
..+|.+||++.|+++
T Consensus 265 ~~dp~~Rps~~~ll~ 279 (289)
T 1x8b_A 265 HPDPERRPSAMALVK 279 (289)
T ss_dssp CSSGGGSCCHHHHHT
T ss_pred CCCcccCCCHHHHhh
Confidence 999999999999864
No 323
>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A
Probab=96.83 E-value=0.00042 Score=64.67 Aligned_cols=91 Identities=13% Similarity=0.116 Sum_probs=49.9
Q ss_pred ccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHh---CCCcc----eee---ecc---ccccccccccchhh
Q 011044 386 VSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLL---SISVM----EVV---DAN---LLSWKDKHFMTKEQ 452 (495)
Q Consensus 386 ~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~---~~~~~----~v~---d~~---l~~~~~~~~~~~~~ 452 (495)
.+.++||||+|+++.|++||+.|... +.+....++... ..... .+. +.. ..............
T Consensus 179 ~~~~~DiwslG~il~~l~~~~~p~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (292)
T 3o0g_A 179 YSTSIDMWSAGCIFAELANAGRPLFP----GNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYPATTSLVNVVPK 254 (292)
T ss_dssp CCTHHHHHHHHHHHHHHTTTSCCSCC----CSSHHHHHHHHHHHHCCCCTTTCTTGGGSTTCCCCCCCCTTCCCTTTSTT
T ss_pred cCchHHHHHHHHHHHHHHHcCCCCcC----CCCHHHHHHHHHHHhCCCChhhhhhhcccccccccccccCCcchhhcccc
Confidence 57789999999999999999988422 222222222221 11000 000 000 00000000000011
Q ss_pred HHHHHHHHHhhcCCCCccCchhHHHHHH
Q 011044 453 CMSFVFNLAMECTVESPIRESTQRKLLQ 480 (495)
Q Consensus 453 ~~~~~~~~~~~C~~~~p~~Rp~m~~v~~ 480 (495)
.-..+.++...|.+.+|.+||++.|+++
T Consensus 255 ~~~~~~~li~~~L~~dP~~R~t~~e~l~ 282 (292)
T 3o0g_A 255 LNATGRDLLQNLLKCNPVQRISAEEALQ 282 (292)
T ss_dssp CCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred cChHHHHHHHHHhccChhhCCCHHHHhc
Confidence 2234668899999999999999999864
No 324
>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A
Probab=96.80 E-value=0.00037 Score=65.81 Aligned_cols=84 Identities=11% Similarity=0.113 Sum_probs=50.2
Q ss_pred cccCCCcceeehhhhhhcccCCCCCccccCCCCC----------HHHHHHHHhCCCcceeeeccccccccccccchhhHH
Q 011044 385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMT----------LRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCM 454 (495)
Q Consensus 385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~----------l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~ 454 (495)
..+.++||||+|+++.|++||+.|.......+.. .....+...... ...-+. ......
T Consensus 202 ~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~-----------~~~~~~ 269 (316)
T 2ac3_A 202 IYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWDRGEACPACQNMLFESIQEGK-YEFPDK-----------DWAHIS 269 (316)
T ss_dssp HHTTTHHHHHHHHHHHHHHHSSCSCCCCCCSCSCC----CCHHHHHHHHHHHHHCC-CCCCHH-----------HHTTSC
T ss_pred CCCcccccHhHHHHHHHHHHCCCCCcccccccccccccccchhHHHHHHHHHhccC-cccCch-----------hcccCC
Confidence 3567899999999999999999997543221100 000111111100 000000 000112
Q ss_pred HHHHHHHhhcCCCCccCchhHHHHHH
Q 011044 455 SFVFNLAMECTVESPIRESTQRKLLQ 480 (495)
Q Consensus 455 ~~~~~~~~~C~~~~p~~Rp~m~~v~~ 480 (495)
..+.++...|...+|.+||++.|+++
T Consensus 270 ~~~~~li~~~L~~dP~~Rps~~e~l~ 295 (316)
T 2ac3_A 270 CAAKDLISKLLVRDAKQRLSAAQVLQ 295 (316)
T ss_dssp HHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred HHHHHHHHHHhhCChhhCCCHHHHhc
Confidence 34778899999999999999999965
No 325
>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*
Probab=96.77 E-value=0.00034 Score=64.58 Aligned_cols=73 Identities=14% Similarity=0.198 Sum_probs=48.6
Q ss_pred cCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhcCC
Q 011044 387 STNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECTV 466 (495)
Q Consensus 387 ~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~ 466 (495)
+.++||||+|+++.|+++|+.|.+. .+.....+....... . .+. .....+.++...|..
T Consensus 189 ~~~~Di~slG~~l~~l~~g~~p~~~-----~~~~~~~~~~~~~~~-~--~~~-------------~~~~~l~~li~~~l~ 247 (276)
T 2h6d_A 189 GPEVDIWSCGVILYALLCGTLPFDD-----EHVPTLFKKIRGGVF-Y--IPE-------------YLNRSVATLLMHMLQ 247 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCSSCC-----SSHHHHHHHHHHCCC-C--CCT-------------TSCHHHHHHHHHHTC
T ss_pred CccchHHHHHHHHHHHHhCCCCCCC-----CcHHHHHHHhhcCcc-c--Cch-------------hcCHHHHHHHHHHcc
Confidence 4679999999999999999999643 222232222211110 0 000 112236788999999
Q ss_pred CCccCchhHHHHHH
Q 011044 467 ESPIRESTQRKLLQ 480 (495)
Q Consensus 467 ~~p~~Rp~m~~v~~ 480 (495)
.+|.+||++.|+++
T Consensus 248 ~~p~~Rps~~~~l~ 261 (276)
T 2h6d_A 248 VDPLKRATIKDIRE 261 (276)
T ss_dssp SSGGGSCCHHHHHH
T ss_pred CChhhCCCHHHHHh
Confidence 99999999999975
No 326
>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}
Probab=96.77 E-value=0.00023 Score=67.09 Aligned_cols=91 Identities=12% Similarity=0.112 Sum_probs=50.7
Q ss_pred cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCC-------------c--ceeeeccccccccccccc
Q 011044 385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSIS-------------V--MEVVDANLLSWKDKHFMT 449 (495)
Q Consensus 385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~-------------~--~~v~d~~l~~~~~~~~~~ 449 (495)
..+.++||||+|+++.|++||+.|....-. ......+....... . ..+-++.-..... ..
T Consensus 179 ~~~~~~Di~slG~il~~l~~g~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 253 (311)
T 4agu_A 179 QYGPPVDVWAIGCVFAELLSGVPLWPGKSD--VDQLYLIRKTLGDLIPRHQQVFSTNQYFSGVKIPDPEDMEPLE---LK 253 (311)
T ss_dssp CCCTHHHHHHHHHHHHHHHHSSCSCCCSSH--HHHHHHHHHHHCSCCHHHHHHHHTCGGGTTCCCCCCSSCCCHH---HH
T ss_pred CCCcchhhHHHHHHHHHHHhCCCCCCCCCH--HHHHHHHHHHhcccccccccccccccccccCcCCCccccchhh---hh
Confidence 356789999999999999999998643211 11111111111110 0 0010110000000 00
Q ss_pred hhhHHHHHHHHHhhcCCCCccCchhHHHHHH
Q 011044 450 KEQCMSFVFNLAMECTVESPIRESTQRKLLQ 480 (495)
Q Consensus 450 ~~~~~~~~~~~~~~C~~~~p~~Rp~m~~v~~ 480 (495)
.......+.++...|...+|.+||++.|+++
T Consensus 254 ~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 284 (311)
T 4agu_A 254 FPNISYPALGLLKGCLHMDPTERLTCEQLLH 284 (311)
T ss_dssp CTTCCHHHHHHHHHHCCSSTTTSCCHHHHHT
T ss_pred cccccHHHHHHHHHHccCChhhcCCHHHHhc
Confidence 0122334778999999999999999999963
No 327
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7
Probab=96.77 E-value=0.00042 Score=67.64 Aligned_cols=81 Identities=12% Similarity=0.136 Sum_probs=51.0
Q ss_pred CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044 383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM 462 (495)
Q Consensus 383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~ 462 (495)
....+.++||||+||++.||+||+.|... . +-...+........ . .+.... ......+.++..
T Consensus 224 ~~~~~~~~DiwSlG~il~elltg~~Pf~~----~-~~~~~~~~i~~~~~-~-~~~~~~----------~~~s~~~~~li~ 286 (387)
T 1kob_A 224 REPVGFYTDMWAIGVLGYVLLSGLSPFAG----E-DDLETLQNVKRCDW-E-FDEDAF----------SSVSPEAKDFIK 286 (387)
T ss_dssp TCCBCHHHHHHHHHHHHHHHHHSCCSSCC----S-SHHHHHHHHHHCCC-C-CCSSTT----------TTSCHHHHHHHH
T ss_pred CCCCCCcccEeeHhHHHHHHHhCCCCCCC----C-CHHHHHHHHHhCCC-C-CCcccc----------ccCCHHHHHHHH
Confidence 34466789999999999999999999542 1 22222222211110 0 011110 011223678899
Q ss_pred hcCCCCccCchhHHHHHH
Q 011044 463 ECTVESPIRESTQRKLLQ 480 (495)
Q Consensus 463 ~C~~~~p~~Rp~m~~v~~ 480 (495)
.|...+|.+||++.|+++
T Consensus 287 ~~L~~dP~~Rpt~~ell~ 304 (387)
T 1kob_A 287 NLLQKEPRKRLTVHDALE 304 (387)
T ss_dssp TTSCSSGGGSCCHHHHHT
T ss_pred HHcCCChhHCcCHHHHhh
Confidence 999999999999999965
No 328
>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*
Probab=96.76 E-value=0.00026 Score=66.89 Aligned_cols=94 Identities=15% Similarity=0.103 Sum_probs=51.8
Q ss_pred cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCC----cceeeeccc-----ccccc--ccccchhhH
Q 011044 385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSIS----VMEVVDANL-----LSWKD--KHFMTKEQC 453 (495)
Q Consensus 385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~----~~~v~d~~l-----~~~~~--~~~~~~~~~ 453 (495)
..+.++||||+|+++.|++||+.|...... ......+....... ...+.+... ..... .........
T Consensus 196 ~~~~~~DiwslG~il~~ll~g~~pf~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (311)
T 3niz_A 196 KYSTSVDIWSIGCIFAEMITGKPLFPGVTD--DDQLPKIFSILGTPNPREWPQVQELPLWKQRTFQVFEKKPWSSIIPGF 273 (311)
T ss_dssp SCCTHHHHHHHHHHHHHHHHSSCSCCCSST--TTHHHHHHHHHCCCCTTTSGGGTTSHHHHSCCCCCCCCCCHHHHSTTC
T ss_pred CCCchHHhHHHHHHHHHHHhCCCCCCCCCh--HHHHHHHHHHHCCCChHHhhhhhccchhhhcccccccCCcHHHhCccc
Confidence 356789999999999999999999654322 12222222222111 000000000 00000 000000112
Q ss_pred HHHHHHHHhhcCCCCccCchhHHHHHH
Q 011044 454 MSFVFNLAMECTVESPIRESTQRKLLQ 480 (495)
Q Consensus 454 ~~~~~~~~~~C~~~~p~~Rp~m~~v~~ 480 (495)
...+.++...|...+|.+||++.|+++
T Consensus 274 ~~~~~~li~~~L~~dP~~Rpt~~ell~ 300 (311)
T 3niz_A 274 CQEGIDLLSNMLCFDPNKRISARDAMN 300 (311)
T ss_dssp CHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred CHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence 234678899999999999999999864
No 329
>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}
Probab=96.75 E-value=0.00059 Score=67.71 Aligned_cols=78 Identities=14% Similarity=0.233 Sum_probs=47.7
Q ss_pred ccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044 384 GRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM 462 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~ 462 (495)
...+.++||||+||++.|++| |+.|..... . ................+ ....-..+.++..
T Consensus 204 ~~~t~~~DiwSlG~il~ellt~g~~pf~~~~----~--~~~~~~~~~~~~~~~~~------------~~~~~~~~~~li~ 265 (432)
T 3p23_A 204 ENPTYTVDIFSAGCVFYYVISEGSHPFGKSL----Q--RQANILLGACSLDCLHP------------EKHEDVIARELIE 265 (432)
T ss_dssp -CCCTHHHHHHHHHHHHHHHTTSCBTTBSTT----T--HHHHHHTTCCCCTTSCT------------TCHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHHcCCCCCcchhh----H--HHHHHHhccCCccccCc------------cccccHHHHHHHH
Confidence 345568999999999999999 888853211 1 11111111111100000 0112233567899
Q ss_pred hcCCCCccCchhHHHHH
Q 011044 463 ECTVESPIRESTQRKLL 479 (495)
Q Consensus 463 ~C~~~~p~~Rp~m~~v~ 479 (495)
.|.+.+|.+||++.||+
T Consensus 266 ~~L~~dP~~Rps~~evl 282 (432)
T 3p23_A 266 KMIAMDPQKRPSAKHVL 282 (432)
T ss_dssp HHSCSSGGGSCCHHHHH
T ss_pred HHHhCCHhhCCCHHHHH
Confidence 99999999999999996
No 330
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Probab=96.74 E-value=0.00061 Score=65.92 Aligned_cols=79 Identities=13% Similarity=0.118 Sum_probs=49.6
Q ss_pred cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhc
Q 011044 385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMEC 464 (495)
Q Consensus 385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C 464 (495)
..+.++||||||+++.|++||+.|... . +-....+....... ....+. .......+.++...|
T Consensus 281 ~~~~~~Di~slG~il~ell~g~~pf~~----~-~~~~~~~~i~~~~~-~~~~~~-----------~~~~~~~~~~li~~~ 343 (365)
T 2y7j_A 281 GYGKEVDLWACGVILFTLLAGSPPFWH----R-RQILMLRMIMEGQY-QFSSPE-----------WDDRSSTVKDLISRL 343 (365)
T ss_dssp CBCTTHHHHHHHHHHHHHHHSSCSSCC----S-SHHHHHHHHHHTCC-CCCHHH-----------HSSSCHHHHHHHHHH
T ss_pred CCCchhhHHhHHHHHHHHHHCCCCCCC----C-CHHHHHHHHHhCCC-CCCCcc-----------cccCCHHHHHHHHHH
Confidence 467789999999999999999999642 1 11111111111110 000000 001123367889999
Q ss_pred CCCCccCchhHHHHHH
Q 011044 465 TVESPIRESTQRKLLQ 480 (495)
Q Consensus 465 ~~~~p~~Rp~m~~v~~ 480 (495)
...+|.+||++.|+++
T Consensus 344 L~~dP~~Rps~~ell~ 359 (365)
T 2y7j_A 344 LQVDPEARLTAEQALQ 359 (365)
T ss_dssp SCSSTTTSCCHHHHHH
T ss_pred cCCChhHCcCHHHHhc
Confidence 9999999999999864
No 331
>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*
Probab=96.73 E-value=0.00029 Score=65.86 Aligned_cols=77 Identities=14% Similarity=0.179 Sum_probs=50.1
Q ss_pred CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044 383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM 462 (495)
Q Consensus 383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~ 462 (495)
....+.++|+||+|+++.|++||+.|.+. ............... . +-. .....+.++..
T Consensus 189 ~~~~~~~~Di~slG~~l~~l~~g~~p~~~-----~~~~~~~~~~~~~~~-~-----~~~----------~~~~~~~~li~ 247 (294)
T 2rku_A 189 KKGHSFEVDVWSIGCIMYTLLVGKPPFET-----SCLKETYLRIKKNEY-S-----IPK----------HINPVAASLIQ 247 (294)
T ss_dssp TSCBCTHHHHHHHHHHHHHHHHSSCTTCC-----SSHHHHHHHHHTTCC-C-----CCT----------TSCHHHHHHHH
T ss_pred cCCCCchhhHHHHHHHHHHHHhCCCCCCC-----CCHHHHHHHHhhccC-C-----Ccc----------ccCHHHHHHHH
Confidence 34456789999999999999999999643 122222222211110 0 000 11123667888
Q ss_pred hcCCCCccCchhHHHHHH
Q 011044 463 ECTVESPIRESTQRKLLQ 480 (495)
Q Consensus 463 ~C~~~~p~~Rp~m~~v~~ 480 (495)
.|...+|.+||++.|+++
T Consensus 248 ~~l~~~p~~Rps~~~ll~ 265 (294)
T 2rku_A 248 KMLQTDPTARPTINELLN 265 (294)
T ss_dssp HHTCSSGGGSCCGGGGGG
T ss_pred HHcccChhhCcCHHHHhh
Confidence 999999999999999865
No 332
>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B
Probab=96.72 E-value=0.00046 Score=65.46 Aligned_cols=96 Identities=14% Similarity=0.134 Sum_probs=51.5
Q ss_pred CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCC-c----ceeeecc--ccccc-cccccchhhHH
Q 011044 383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSIS-V----MEVVDAN--LLSWK-DKHFMTKEQCM 454 (495)
Q Consensus 383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~-~----~~v~d~~--l~~~~-~~~~~~~~~~~ 454 (495)
....+.++||||||+++.|++||+.|..... .......+....... . .....++ +.... ...........
T Consensus 193 ~~~~~~~~Di~slG~il~~l~~g~~pf~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (326)
T 1blx_A 193 QSSYATPVDLWSVGCIFAEMFRRKPLFRGSS--DVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDID 270 (326)
T ss_dssp TCCCCTHHHHHHHHHHHHHHHHSSCSCCCSS--HHHHHHHHHHHHCCCCGGGSCTTCSSCGGGSCCCCCCCGGGTCCSCC
T ss_pred cCCCCcchhHHHHHHHHHHHHcCCCCCCCCC--HHHHHHHHHHHcCCCCcccCccccccchhhhcccCcchhhhccccCC
Confidence 3456778999999999999999999954311 111111111111100 0 0000000 00000 00000001123
Q ss_pred HHHHHHHhhcCCCCccCchhHHHHHH
Q 011044 455 SFVFNLAMECTVESPIRESTQRKLLQ 480 (495)
Q Consensus 455 ~~~~~~~~~C~~~~p~~Rp~m~~v~~ 480 (495)
..+.++...|...+|.+||++.|+++
T Consensus 271 ~~~~~li~~~L~~dP~~Rpt~~e~l~ 296 (326)
T 1blx_A 271 ELGKDLLLKCLTFNPAKRISAYSALS 296 (326)
T ss_dssp HHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred HHHHHHHHHHcCCCcccCCCHHHHhc
Confidence 34678899999999999999999863
No 333
>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...
Probab=96.69 E-value=0.00043 Score=65.62 Aligned_cols=67 Identities=12% Similarity=0.218 Sum_probs=46.0
Q ss_pred cCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhcCC
Q 011044 387 STNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECTV 466 (495)
Q Consensus 387 ~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~ 466 (495)
+.++||||||+++.|++||+.|.+.. ......... ... .....+.++...|.+
T Consensus 227 ~~~~Di~slG~il~el~~g~~pf~~~-------~~~~~~~~~------~~~--------------~~~~~~~~li~~~l~ 279 (320)
T 3a99_A 227 GRSAAVWSLGILLYDMVCGDIPFEHD-------EEIIRGQVF------FRQ--------------RVSSECQHLIRWCLA 279 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCSCCSH-------HHHHHCCCC------CSS--------------CCCHHHHHHHHHHTC
T ss_pred CccchHHhHHHHHHHHHHCCCCCCCh-------hhhhccccc------ccc--------------cCCHHHHHHHHHHcc
Confidence 45789999999999999999996421 111111000 000 111236788899999
Q ss_pred CCccCchhHHHHHH
Q 011044 467 ESPIRESTQRKLLQ 480 (495)
Q Consensus 467 ~~p~~Rp~m~~v~~ 480 (495)
.+|.+||++.|+++
T Consensus 280 ~dp~~Rps~~~ll~ 293 (320)
T 3a99_A 280 LRPSDRPTFEEIQN 293 (320)
T ss_dssp SSGGGSCCHHHHHT
T ss_pred CChhhCcCHHHHhc
Confidence 99999999999965
No 334
>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}
Probab=96.69 E-value=0.00032 Score=67.04 Aligned_cols=67 Identities=13% Similarity=0.204 Sum_probs=45.9
Q ss_pred cCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhcCC
Q 011044 387 STNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECTV 466 (495)
Q Consensus 387 ~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~ 466 (495)
+.++||||||+++.|+++|+.|...... ..... ...+. .....+.++...|..
T Consensus 208 ~~~~DiwslG~il~el~~g~~pf~~~~~-----------~~~~~---~~~~~-------------~~~~~l~~li~~~L~ 260 (335)
T 3dls_A 208 GPELEMWSLGVTLYTLVFEENPFCELEE-----------TVEAA---IHPPY-------------LVSKELMSLVSGLLQ 260 (335)
T ss_dssp SHHHHHHHHHHHHHHHHHSSCSCSSGGG-----------GTTTC---CCCSS-------------CCCHHHHHHHHHHTC
T ss_pred CCcccchhHHHHHHHHHhCCCchhhHHH-----------HHhhc---cCCCc-------------ccCHHHHHHHHHHcc
Confidence 5678999999999999999999643110 00000 00000 011236778889999
Q ss_pred CCccCchhHHHHHH
Q 011044 467 ESPIRESTQRKLLQ 480 (495)
Q Consensus 467 ~~p~~Rp~m~~v~~ 480 (495)
.+|.+||++.++++
T Consensus 261 ~dP~~Rps~~ell~ 274 (335)
T 3dls_A 261 PVPERRTTLEKLVT 274 (335)
T ss_dssp SSGGGSCCHHHHHH
T ss_pred CChhhCcCHHHHhc
Confidence 99999999999975
No 335
>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A
Probab=96.69 E-value=0.00013 Score=70.20 Aligned_cols=80 Identities=10% Similarity=0.105 Sum_probs=50.2
Q ss_pred CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044 383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM 462 (495)
Q Consensus 383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~ 462 (495)
....+.++||||+||++.|++||+.|.... -....+........ .++.. .......+.++..
T Consensus 207 ~~~~~~~~DiwslG~il~~ll~g~~pf~~~------~~~~~~~i~~~~~~--~~~~~----------~~~~s~~~~~li~ 268 (351)
T 3c0i_A 207 REPYGKPVDVWGCGVILFILLSGCLPFYGT------KERLFEGIIKGKYK--MNPRQ----------WSHISESAKDLVR 268 (351)
T ss_dssp TCCBCTHHHHHHHHHHHHHHHHSSCSSCSS------HHHHHHHHHHTCCC--CCHHH----------HTTSCHHHHHHHH
T ss_pred CCCCCchHhhHHHHHHHHHHHHCCCCCCCc------HHHHHHHHHcCCCC--CCccc----------cccCCHHHHHHHH
Confidence 344577899999999999999999996431 11112211111100 00100 0011233677889
Q ss_pred hcCCCCccCchhHHHHHH
Q 011044 463 ECTVESPIRESTQRKLLQ 480 (495)
Q Consensus 463 ~C~~~~p~~Rp~m~~v~~ 480 (495)
.|...+|.+||++.|+++
T Consensus 269 ~~L~~dP~~R~s~~e~l~ 286 (351)
T 3c0i_A 269 RMLMLDPAERITVYEALN 286 (351)
T ss_dssp HHTCSSTTTSCCHHHHHT
T ss_pred HHCCCChhHCcCHHHHhc
Confidence 999999999999999964
No 336
>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A
Probab=96.69 E-value=0.00038 Score=66.33 Aligned_cols=73 Identities=16% Similarity=0.235 Sum_probs=48.9
Q ss_pred cCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhcCC
Q 011044 387 STNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECTV 466 (495)
Q Consensus 387 ~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~ 466 (495)
+.++||||+||++.|++||+.|.+. .+.....+........ -+. .....+..+...|..
T Consensus 192 ~~~~DiwslG~il~ell~g~~pf~~-----~~~~~~~~~i~~~~~~---~p~-------------~~s~~~~~li~~~L~ 250 (328)
T 3fe3_A 192 GPEVDVWSLGVILYTLVSGSLPFDG-----QNLKELRERVLRGKYR---IPF-------------YMSTDCENLLKRFLV 250 (328)
T ss_dssp SHHHHHHHHHHHHHHHHHSSCSSCC-----SSHHHHHHHHHHCCCC---CCT-------------TSCHHHHHHHHHHCC
T ss_pred CchhhhhhhHHHHHHHHhCCCCCCC-----CCHHHHHHHHHhCCCC---CCC-------------CCCHHHHHHHHHHCC
Confidence 3578999999999999999999542 2344444333322110 000 011225678889999
Q ss_pred CCccCchhHHHHHH
Q 011044 467 ESPIRESTQRKLLQ 480 (495)
Q Consensus 467 ~~p~~Rp~m~~v~~ 480 (495)
.+|.+||++.|+++
T Consensus 251 ~dP~~R~t~~eil~ 264 (328)
T 3fe3_A 251 LNPIKRGTLEQIMK 264 (328)
T ss_dssp SSTTTSCCHHHHTT
T ss_pred CChhHCcCHHHHhc
Confidence 99999999999854
No 337
>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*
Probab=96.67 E-value=0.00032 Score=66.22 Aligned_cols=79 Identities=11% Similarity=0.192 Sum_probs=48.9
Q ss_pred ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044 384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME 463 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~ 463 (495)
...+.++||||+|+++.|++||+.|... . +-............. .+.. ........+.++...
T Consensus 194 ~~~~~~~Di~slG~~l~~ll~g~~pf~~----~-~~~~~~~~~~~~~~~---~~~~---------~~~~~~~~l~~li~~ 256 (311)
T 3ork_A 194 DSVDARSDVYSLGCVLYEVLTGEPPFTG----D-SPVSVAYQHVREDPI---PPSA---------RHEGLSADLDAVVLK 256 (311)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHSSCSCCC----S-SHHHHHHHHHHCCCC---CHHH---------HSTTCCHHHHHHHHH
T ss_pred CCCCchHhHHHHHHHHHHHHhCCCCCCC----C-ChHHHHHHHhcCCCC---Cccc---------ccCCCCHHHHHHHHH
Confidence 3456789999999999999999999542 1 222222222211100 0000 000122346788999
Q ss_pred cCCCCccCchhHHHHH
Q 011044 464 CTVESPIRESTQRKLL 479 (495)
Q Consensus 464 C~~~~p~~Rp~m~~v~ 479 (495)
|.+.+|.+||+..+++
T Consensus 257 ~l~~dP~~R~~~~~~l 272 (311)
T 3ork_A 257 ALAKNPENRYQTAAEM 272 (311)
T ss_dssp HTCSSGGGSCSSHHHH
T ss_pred HHhcCHhhChhhHHHH
Confidence 9999999999877765
No 338
>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*
Probab=96.67 E-value=0.00051 Score=64.22 Aligned_cols=81 Identities=12% Similarity=0.109 Sum_probs=51.4
Q ss_pred CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044 383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM 462 (495)
Q Consensus 383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~ 462 (495)
....+.++||||+|+++.|+++|+.|.... +-....+........ ...+ ........+.++..
T Consensus 203 ~~~~~~~~Di~slG~~l~~l~~g~~p~~~~-----~~~~~~~~~~~~~~~-~~~~-----------~~~~~~~~l~~li~ 265 (298)
T 1phk_A 203 HPGYGKEVDMWSTGVIMYTLLAGSPPFWHR-----KQMLMLRMIMSGNYQ-FGSP-----------EWDDYSDTVKDLVS 265 (298)
T ss_dssp SCCBCTHHHHHHHHHHHHHHHHSSCSSCCS-----SHHHHHHHHHHTCCC-CCTT-----------TGGGSCHHHHHHHH
T ss_pred cccCCcccccHhHHHHHHHHHHCCCCCcCc-----cHHHHHHHHhcCCcc-cCcc-----------cccccCHHHHHHHH
Confidence 345677899999999999999999996421 222222222111100 0000 01122334778899
Q ss_pred hcCCCCccCchhHHHHHH
Q 011044 463 ECTVESPIRESTQRKLLQ 480 (495)
Q Consensus 463 ~C~~~~p~~Rp~m~~v~~ 480 (495)
.|...+|.+||++.|+++
T Consensus 266 ~~l~~dp~~Rps~~~ll~ 283 (298)
T 1phk_A 266 RFLVVQPQKRYTAEEALA 283 (298)
T ss_dssp HHCCSSGGGSCCHHHHTT
T ss_pred HHccCCcccCCCHHHHHh
Confidence 999999999999999864
No 339
>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A
Probab=96.65 E-value=0.00018 Score=68.45 Aligned_cols=84 Identities=7% Similarity=0.095 Sum_probs=49.7
Q ss_pred ccccCCCcceeehhhhhhcccCCCCCccccCC--CCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044 384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNG--EMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA 461 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~--~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~ 461 (495)
...+.++||||+|+++.|++||+.|....... ........+....... .. +.. ........+.++.
T Consensus 184 ~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~i~~~~~-~~-~~~----------~~~~~s~~~~~li 251 (325)
T 3kn6_A 184 NGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTSAVEIMKKIKKGDF-SF-EGE----------AWKNVSQEAKDLI 251 (325)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHSSCTTC-------CCCHHHHHHHHTTTCC-CC-CSH----------HHHTSCHHHHHHH
T ss_pred CCCCCccchHHHHHHHHHHHhCCCCCCCCccccccccHHHHHHHHHcCCC-CC-Ccc----------cccCCCHHHHHHH
Confidence 34566899999999999999999997542211 1222222222222111 00 000 0011223366788
Q ss_pred hhcCCCCccCchhHHHHH
Q 011044 462 MECTVESPIRESTQRKLL 479 (495)
Q Consensus 462 ~~C~~~~p~~Rp~m~~v~ 479 (495)
..|...+|.+||++.|++
T Consensus 252 ~~~L~~dP~~Rpt~~ell 269 (325)
T 3kn6_A 252 QGLLTVDPNKRLKMSGLR 269 (325)
T ss_dssp HHHHCCCTTTCCCTTTST
T ss_pred HHHCCCChhHCCCHHHHh
Confidence 899999999999999875
No 340
>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}
Probab=96.65 E-value=0.00047 Score=65.90 Aligned_cols=73 Identities=15% Similarity=0.231 Sum_probs=46.9
Q ss_pred cCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhcCC
Q 011044 387 STNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECTV 466 (495)
Q Consensus 387 ~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~ 466 (495)
+.++||||+|+++.|+++|+.|.+....... ...+..... . ........+.++...|..
T Consensus 186 ~~~~DiwslG~il~~ll~g~~Pf~~~~~~~~-------------~~~i~~~~~-~-------~p~~~s~~~~~li~~~L~ 244 (336)
T 3h4j_B 186 GPEVDVWSCGIVLYVMLVGRLPFDDEFIPNL-------------FKKVNSCVY-V-------MPDFLSPGAQSLIRRMIV 244 (336)
T ss_dssp CHHHHHHHHHHHHHHHHHSSCSSBCSSSTTC-------------BCCCCSSCC-C-------CCTTSCHHHHHHHHTTSC
T ss_pred CCccchhHHHHHHHHHHhCCCCCCCccHHHH-------------HHHHHcCCC-C-------CcccCCHHHHHHHHHHcC
Confidence 5679999999999999999999754221110 000000000 0 000112236678999999
Q ss_pred CCccCchhHHHHHH
Q 011044 467 ESPIRESTQRKLLQ 480 (495)
Q Consensus 467 ~~p~~Rp~m~~v~~ 480 (495)
.+|.+||++.|+++
T Consensus 245 ~dP~~Rpt~~eil~ 258 (336)
T 3h4j_B 245 ADPMQRITIQEIRR 258 (336)
T ss_dssp SSGGGSCCHHHHTT
T ss_pred CChhHCcCHHHHHh
Confidence 99999999999853
No 341
>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*
Probab=96.65 E-value=0.00025 Score=69.26 Aligned_cols=28 Identities=25% Similarity=0.400 Sum_probs=24.1
Q ss_pred ccccCCCcceeehhhhhhcccCCCCCcc
Q 011044 384 GRVSTNGDIYNFGIMIMETFTAKKPTDE 411 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~tgk~p~~~ 411 (495)
...+.++||||+||++.|++||+.|...
T Consensus 212 ~~~~~~~DiwslG~il~el~~g~~pf~~ 239 (389)
T 3gni_B 212 QGYDAKSDIYSVGITACELANGHVPFKD 239 (389)
T ss_dssp SCBCTHHHHHHHHHHHHHHHHSSCTTTT
T ss_pred CCCCcHhHHHHHHHHHHHHHHCCCCCCC
Confidence 3467789999999999999999999653
No 342
>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}
Probab=96.64 E-value=0.00026 Score=66.90 Aligned_cols=94 Identities=11% Similarity=0.092 Sum_probs=50.2
Q ss_pred cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcc----ee-------eeccccccccccccchhhH
Q 011044 385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVM----EV-------VDANLLSWKDKHFMTKEQC 453 (495)
Q Consensus 385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~----~v-------~d~~l~~~~~~~~~~~~~~ 453 (495)
..+.++||||||+++.|++||+.|...... ......+....+.... ++ ...................
T Consensus 201 ~~~~~~Di~slG~il~el~~g~~pf~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (320)
T 2i6l_A 201 NYTKAIDMWAAGCIFAEMLTGKTLFAGAHE--LEQMQLILESIPVVHEEDRQELLSVIPVYIRNDMTEPHKPLTQLLPGI 278 (320)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHHHSCCCCHHHHHHHHTTSCHHHHHHTTSCCCCHHHHSTTC
T ss_pred cCCchhhhHhHHHHHHHHHhCCCCCCCCCH--HHHHHHHHHhcCCCchhhhhhhhhcCcccccccccCCCCChhHhcchh
Confidence 456789999999999999999999643210 1111111111110000 00 0000000000000000112
Q ss_pred HHHHHHHHhhcCCCCccCchhHHHHHH
Q 011044 454 MSFVFNLAMECTVESPIRESTQRKLLQ 480 (495)
Q Consensus 454 ~~~~~~~~~~C~~~~p~~Rp~m~~v~~ 480 (495)
...+.++...|.+.+|.+||++.|+++
T Consensus 279 ~~~~~~li~~~L~~dP~~Rpt~~ell~ 305 (320)
T 2i6l_A 279 SREAVDFLEQILTFSPMDRLTAEEALS 305 (320)
T ss_dssp CHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred hHHHHHHHHHHcCCCccccCCHHHHhC
Confidence 344778999999999999999999964
No 343
>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B
Probab=96.62 E-value=0.00061 Score=65.85 Aligned_cols=80 Identities=14% Similarity=0.127 Sum_probs=50.0
Q ss_pred ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044 384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME 463 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~ 463 (495)
...+.++||||+||++.|++||+.|... . +-............ ..-.+ ........+.++...
T Consensus 205 ~~~~~~~DiwslG~il~~ll~g~~Pf~~----~-~~~~~~~~i~~~~~-~~~~~-----------~~~~~~~~~~~li~~ 267 (362)
T 2bdw_A 205 DPYSKPVDIWACGVILYILLVGYPPFWD----E-DQHRLYAQIKAGAY-DYPSP-----------EWDTVTPEAKSLIDS 267 (362)
T ss_dssp CCCCTHHHHHHHHHHHHHHHHSSCSSCC----S-SHHHHHHHHHHTCC-CCCTT-----------GGGGSCHHHHHHHHH
T ss_pred CCCCchhhHHHHHHHHHHHHHCCCCCCC----C-CHHHHHHHHHhCCC-CCCcc-----------cccCCCHHHHHHHHH
Confidence 3456789999999999999999999532 1 22222222211110 00000 011112336678889
Q ss_pred cCCCCccCchhHHHHHH
Q 011044 464 CTVESPIRESTQRKLLQ 480 (495)
Q Consensus 464 C~~~~p~~Rp~m~~v~~ 480 (495)
|...+|.+||++.|+++
T Consensus 268 ~L~~dP~~R~t~~e~l~ 284 (362)
T 2bdw_A 268 MLTVNPKKRITADQALK 284 (362)
T ss_dssp HSCSSGGGSCCHHHHTT
T ss_pred HcCCChhhCcCHHHHhc
Confidence 99999999999999853
No 344
>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A
Probab=96.61 E-value=0.00076 Score=65.16 Aligned_cols=77 Identities=12% Similarity=0.173 Sum_probs=48.5
Q ss_pred CCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhcCCCC
Q 011044 389 NGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECTVES 468 (495)
Q Consensus 389 ~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~~~ 468 (495)
++||||+|+++.|+++|+.|...... .......++......... + . .......+.++...|...+
T Consensus 198 ~~DiwslG~il~ell~g~~Pf~~~~~-~~~~~~~~~~~~~~~~~~---~---~--------~~~~s~~~~~li~~~L~~d 262 (361)
T 3uc3_A 198 IADVWSCGVTLYVMLVGAYPFEDPEE-PRDYRKTIQRILSVKYSI---P---D--------DIRISPECCHLISRIFVAD 262 (361)
T ss_dssp HHHHHHHHHHHHHHHHSSCSCC-----CCCHHHHHHHHHTTCCCC---C---T--------TSCCCHHHHHHHHHHSCSC
T ss_pred eeeeehhHHHHHHHHhCCCCCCCCcc-HHHHHHHHHHHhcCCCCC---C---C--------cCCCCHHHHHHHHHHccCC
Confidence 38999999999999999999653221 233444444333222100 0 0 0001123667899999999
Q ss_pred ccCchhHHHHHH
Q 011044 469 PIRESTQRKLLQ 480 (495)
Q Consensus 469 p~~Rp~m~~v~~ 480 (495)
|.+||++.|+++
T Consensus 263 P~~Rps~~ell~ 274 (361)
T 3uc3_A 263 PATRISIPEIKT 274 (361)
T ss_dssp TTTSCCHHHHHT
T ss_pred hhHCcCHHHHHh
Confidence 999999999864
No 345
>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*
Probab=96.61 E-value=0.0003 Score=67.06 Aligned_cols=91 Identities=14% Similarity=0.165 Sum_probs=50.4
Q ss_pred cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHH--HhCC------------C-cceeeeccccccccccccc
Q 011044 385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVND--LLSI------------S-VMEVVDANLLSWKDKHFMT 449 (495)
Q Consensus 385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~--~~~~------------~-~~~v~d~~l~~~~~~~~~~ 449 (495)
..+.++||||+|+++.|++||+.|... ........+. .... . ......+.+...... ...
T Consensus 201 ~~~~~~Di~slG~il~~l~~g~~pf~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 275 (331)
T 4aaa_A 201 KYGKAVDVWAIGCLVTEMFMGEPLFPG----DSDIDQLYHIMMCLGNLIPRHQELFNKNPVFAGVRLPEIKEREPL-ERR 275 (331)
T ss_dssp TCCTHHHHHHHHHHHHHHHHSSCSCCC----SSHHHHHHHHHHHHCSCCHHHHHHHHHCGGGTTCCCCCCSSCCCH-HHH
T ss_pred CcchHHHHHHHHHHHHHHHhCCCCCCC----CCcHHHHHHHHHHhCCCChhhhhHhhhccccccccCccccccchh-hhc
Confidence 456789999999999999999988542 2111111110 0000 0 000111111000000 000
Q ss_pred hhhHHHHHHHHHhhcCCCCccCchhHHHHHH
Q 011044 450 KEQCMSFVFNLAMECTVESPIRESTQRKLLQ 480 (495)
Q Consensus 450 ~~~~~~~~~~~~~~C~~~~p~~Rp~m~~v~~ 480 (495)
.......+.++...|...+|.+||++.|+++
T Consensus 276 ~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~ 306 (331)
T 4aaa_A 276 YPKLSEVVIDLAKKCLHIDPDKRPFCAELLH 306 (331)
T ss_dssp STTSCHHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred ccchhHHHHHHHHHHhccCcccCCCHHHHhc
Confidence 0122345788999999999999999999964
No 346
>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*
Probab=96.60 E-value=0.00074 Score=63.26 Aligned_cols=70 Identities=14% Similarity=0.219 Sum_probs=44.7
Q ss_pred cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhc
Q 011044 385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMEC 464 (495)
Q Consensus 385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C 464 (495)
..+.++|+||+||++.||+||+.|.. + .+..+........... + +.- .-..+..+...|
T Consensus 202 ~y~~~~DiwSlGvilyemltG~~PF~----~-~~~~~~~~~i~~~~~~-~--p~~-------------~s~~~~~li~~~ 260 (304)
T 3ubd_A 202 GHTQSADWWSFGVLMFEMLTGTLPFQ----G-KDRKETMTMILKAKLG-M--PQF-------------LSPEAQSLLRML 260 (304)
T ss_dssp CCCTHHHHHHHHHHHHHHHHSSCSSC----C-SSHHHHHHHHHHCCCC-C--CTT-------------SCHHHHHHHHHH
T ss_pred CCCCCCcccchHHHHHHHHhCCCCCC----C-cCHHHHHHHHHcCCCC-C--CCc-------------CCHHHHHHHHHH
Confidence 34567999999999999999999953 2 2333333332221110 0 100 112256778899
Q ss_pred CCCCccCchhH
Q 011044 465 TVESPIRESTQ 475 (495)
Q Consensus 465 ~~~~p~~Rp~m 475 (495)
.+.+|.+||+.
T Consensus 261 L~~dP~~R~ta 271 (304)
T 3ubd_A 261 FKRNPANRLGA 271 (304)
T ss_dssp TCSSGGGSTTC
T ss_pred cccCHHHCCCC
Confidence 99999999984
No 347
>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...
Probab=96.59 E-value=0.001 Score=64.49 Aligned_cols=27 Identities=19% Similarity=0.074 Sum_probs=23.6
Q ss_pred HHHHHHHHhhcCCCCccCchhHHHHHH
Q 011044 454 MSFVFNLAMECTVESPIRESTQRKLLQ 480 (495)
Q Consensus 454 ~~~~~~~~~~C~~~~p~~Rp~m~~v~~ 480 (495)
...+.++...|...+|.+||++.|+++
T Consensus 292 ~~~~~~li~~mL~~dP~~R~t~~e~l~ 318 (371)
T 2xrw_A 292 ASQARDLLSKMLVIDASKRISVDEALQ 318 (371)
T ss_dssp HHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred cHHHHHHHHHHCcCChhhCCCHHHHhC
Confidence 445788999999999999999999964
No 348
>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}
Probab=96.59 E-value=0.00035 Score=66.36 Aligned_cols=94 Identities=10% Similarity=0.049 Sum_probs=51.4
Q ss_pred cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcc----eeeecc------cccccccc-ccchhhH
Q 011044 385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVM----EVVDAN------LLSWKDKH-FMTKEQC 453 (495)
Q Consensus 385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~----~v~d~~------l~~~~~~~-~~~~~~~ 453 (495)
..+.++||||+|+++.|++||+.|....- .......+......... .+.+.. ........ .......
T Consensus 177 ~~~~~~DiwslG~il~~l~~g~~pf~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (324)
T 3mtl_A 177 DYSTQIDMWGVGCIFYEMATGRPLFPGST--VEEQLHFIFRILGTPTEETWPGILSNEEFKTYNYPKYRAEALLSHAPRL 254 (324)
T ss_dssp CCCTHHHHHHHHHHHHHHHHSSCSCCCSS--HHHHHHHHHHHHCCCCTTTSTTGGGCHHHHHTCCCCCCCCCHHHHCTTS
T ss_pred CCCcHHHHHHHHHHHHHHHhCCCCCCCCC--HHHHHHHHHHHhCCCChHhchhhhcchhhcccccccccchhhhhhcCCC
Confidence 35678999999999999999999864321 11222222222211111 110000 00000000 0000011
Q ss_pred HHHHHHHHhhcCCCCccCchhHHHHHH
Q 011044 454 MSFVFNLAMECTVESPIRESTQRKLLQ 480 (495)
Q Consensus 454 ~~~~~~~~~~C~~~~p~~Rp~m~~v~~ 480 (495)
-..+.++...|...+|.+||++.|+++
T Consensus 255 ~~~~~~li~~~L~~dP~~R~t~~e~l~ 281 (324)
T 3mtl_A 255 DSDGADLLTKLLQFEGRNRISAEDAMK 281 (324)
T ss_dssp CHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred CHHHHHHHHHHcCcCcccCCCHHHHhc
Confidence 234678899999999999999999964
No 349
>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*
Probab=96.56 E-value=0.00035 Score=65.49 Aligned_cols=75 Identities=17% Similarity=0.324 Sum_probs=44.2
Q ss_pred ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044 384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME 463 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~ 463 (495)
...+.++||||+||++.||++ |. .+..+....+........ +.. ..+.......+...
T Consensus 205 ~~y~~~~DiwSlGvilyell~---Pf----~~~~~~~~~~~~~~~~~~-----p~~----------~~~~~~~~~~li~~ 262 (299)
T 4g31_A 205 NSYSHKVDIFSLGLILFELLY---PF----STQMERVRTLTDVRNLKF-----PPL----------FTQKYPCEYVMVQD 262 (299)
T ss_dssp CCCCTHHHHHHHHHHHHHHHS---CC----SSHHHHHHHHHHHHTTCC-----CHH----------HHHHCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHcc---CC----CCccHHHHHHHHHhcCCC-----CCC----------CcccCHHHHHHHHH
Confidence 345678999999999999996 53 221111111111111110 000 01111224567889
Q ss_pred cCCCCccCchhHHHHHH
Q 011044 464 CTVESPIRESTQRKLLQ 480 (495)
Q Consensus 464 C~~~~p~~Rp~m~~v~~ 480 (495)
|.+.+|.+||++.|+++
T Consensus 263 ~L~~dP~~Rps~~eil~ 279 (299)
T 4g31_A 263 MLSPSPMERPEAINIIE 279 (299)
T ss_dssp HTCSSGGGSCCHHHHHT
T ss_pred HcCCChhHCcCHHHHhc
Confidence 99999999999999865
No 350
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*
Probab=96.56 E-value=0.00025 Score=70.30 Aligned_cols=28 Identities=18% Similarity=0.267 Sum_probs=24.0
Q ss_pred CccccCCCcceeehhhhhhcccCCCCCc
Q 011044 383 EGRVSTNGDIYNFGIMIMETFTAKKPTD 410 (495)
Q Consensus 383 ~~~~~~~~dvysfgilllE~~tgk~p~~ 410 (495)
....+.++|||||||++.|++||+.|..
T Consensus 273 ~~~~~~~~DiwSlG~il~elltG~~pf~ 300 (429)
T 3kvw_A 273 GARYGMPIDMWSLGCILAELLTGYPLLP 300 (429)
T ss_dssp TBCCCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred CCCCCchHHHHhHHHHHHHHHhCCCCCC
Confidence 4456778999999999999999998854
No 351
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=96.56 E-value=0.00061 Score=70.80 Aligned_cols=99 Identities=13% Similarity=0.083 Sum_probs=54.1
Q ss_pred CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcce-eeecccccccc------ccccchhhHHH
Q 011044 383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVME-VVDANLLSWKD------KHFMTKEQCMS 455 (495)
Q Consensus 383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~-v~d~~l~~~~~------~~~~~~~~~~~ 455 (495)
....+.++||||||+++.|++||+.|... +.....|.+......... +.......... ...........
T Consensus 197 ~~~~s~ksDIwSLGviLyeLltG~~Pf~~----~~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~~lp~p~~l~~~ls~ 272 (676)
T 3qa8_A 197 QKKYTVTVDYWSFGTLAFECITGFRPFLP----NWQPVQWHGKVREKSNEHIVVYDDLTGAVKFSSVLPTPNHLSGILAG 272 (676)
T ss_dssp CSCCSTTHHHHHHHHHHHHHHSSCSSCCS----SCHHHHSSTTCC------CCSCCCCSSSCCCCSSSCCSCCCCGGGHH
T ss_pred cCCCCchhHHHHHHHHHHHHHHCCCCCCc----ccchhhhhhhhhcccchhhhhhhhhccccccccccCCchhhchhhhH
Confidence 45567789999999999999999999643 223334433322111111 11111100000 00001122445
Q ss_pred HHHHHHhhcCCCCccCchhHHHH-----HHHHHHH
Q 011044 456 FVFNLAMECTVESPIRESTQRKL-----LQDSQKL 485 (495)
Q Consensus 456 ~~~~~~~~C~~~~p~~Rp~m~~v-----~~~l~~i 485 (495)
.+.++...|...+|.+||++.++ .+.++.+
T Consensus 273 ~L~dLI~~mL~~DP~kRPTa~elL~hp~F~~l~~i 307 (676)
T 3qa8_A 273 KLERWLQCMLMWHQRQRGTDPQNPNVGCFQALDSI 307 (676)
T ss_dssp HHHHHHHHHSCSSCC---CCTTCCCCTTHHHHHHH
T ss_pred HHHHHHHHHccCCHhhCcCHHHHhcCHHHHHHHHH
Confidence 67889999999999999999885 4555554
No 352
>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A
Probab=96.56 E-value=0.00065 Score=63.78 Aligned_cols=80 Identities=14% Similarity=0.096 Sum_probs=50.2
Q ss_pred ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044 384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME 463 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~ 463 (495)
...+.++||||+|+++.|++||+.|.... +-............ .. +... .......+.++...
T Consensus 182 ~~~~~~~Di~slG~il~~l~~g~~pf~~~-----~~~~~~~~i~~~~~-~~-~~~~----------~~~~~~~~~~li~~ 244 (304)
T 2jam_A 182 KPYSKAVDCWSIGVITYILLCGYPPFYEE-----TESKLFEKIKEGYY-EF-ESPF----------WDDISESAKDFICH 244 (304)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHSSCTTTTS-----CHHHHHHHHHHCCC-CC-CTTT----------TTTSCHHHHHHHHH
T ss_pred CCCCchhhHHHHHHHHHHHHHCCCCCCCC-----CHHHHHHHHHcCCC-CC-Cccc----------cccCCHHHHHHHHH
Confidence 34567899999999999999999995421 22222222111110 00 0000 01112346788999
Q ss_pred cCCCCccCchhHHHHHH
Q 011044 464 CTVESPIRESTQRKLLQ 480 (495)
Q Consensus 464 C~~~~p~~Rp~m~~v~~ 480 (495)
|...+|.+||++.|+++
T Consensus 245 ~l~~dp~~Rps~~~~l~ 261 (304)
T 2jam_A 245 LLEKDPNERYTCEKALS 261 (304)
T ss_dssp HHCSSTTTSCCHHHHHT
T ss_pred HcCCChhHCcCHHHHhc
Confidence 99999999999999964
No 353
>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*
Probab=96.56 E-value=0.00055 Score=65.20 Aligned_cols=94 Identities=14% Similarity=-0.016 Sum_probs=49.2
Q ss_pred ccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHh-CCC--cceeee-ccccccccc-cccch-----hhHHH
Q 011044 386 VSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLL-SIS--VMEVVD-ANLLSWKDK-HFMTK-----EQCMS 455 (495)
Q Consensus 386 ~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~-~~~--~~~v~d-~~l~~~~~~-~~~~~-----~~~~~ 455 (495)
.+.++||||+||++.|+++|+.|....-. ...+...++..- +.. ...+.. +........ ..... ...-.
T Consensus 215 ~~~~~DiwslG~il~ell~g~~pf~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (329)
T 3gbz_A 215 YSTSVDIWSIACIWAEMLMKTPLFPGDSE-IDQLFKIFEVLGLPDDTTWPGVTALPDWKQSFPKFRGKTLKRVLGALLDD 293 (329)
T ss_dssp CCTHHHHHHHHHHHHHHHHSSCSSCCSSH-HHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCCCCCHHHHHGGGSCH
T ss_pred CCcHHHHHHHHHHHHHHHHCCCCcCCCCH-HHHHHHHHHHhCCCchhhhhhhhhhhhhhhhhhhhccccHhhhcccccCH
Confidence 57789999999999999999998542110 001111111110 100 000000 000000000 00000 01123
Q ss_pred HHHHHHhhcCCCCccCchhHHHHHH
Q 011044 456 FVFNLAMECTVESPIRESTQRKLLQ 480 (495)
Q Consensus 456 ~~~~~~~~C~~~~p~~Rp~m~~v~~ 480 (495)
.+.++...|...+|.+||++.|+++
T Consensus 294 ~~~~li~~~L~~dP~~R~t~~e~l~ 318 (329)
T 3gbz_A 294 EGLDLLTAMLEMDPVKRISAKNALE 318 (329)
T ss_dssp HHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred HHHHHHHHHccCChhhCCCHHHHhC
Confidence 4678899999999999999999864
No 354
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}
Probab=96.54 E-value=0.00096 Score=66.36 Aligned_cols=81 Identities=11% Similarity=0.139 Sum_probs=50.6
Q ss_pred CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044 383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM 462 (495)
Q Consensus 383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~ 462 (495)
....+.++||||+||++.|+++|+.|... . +-....+....... ..-.+. .......+.++..
T Consensus 187 ~~~~~~~~DIwSlGvilyell~G~~Pf~~----~-~~~~~~~~i~~~~~-~~~~~~-----------~~~~s~~~~~li~ 249 (444)
T 3soa_A 187 KDPYGKPVDLWACGVILYILLVGYPPFWD----E-DQHRLYQQIKAGAY-DFPSPE-----------WDTVTPEAKDLIN 249 (444)
T ss_dssp TCCBCTHHHHHHHHHHHHHHHHSSCSCCC----S-SHHHHHHHHHHTCC-CCCTTT-----------TTTSCHHHHHHHH
T ss_pred CCCCCCccccHHHHHHHHHHHhCCCCCCC----c-cHHHHHHHHHhCCC-CCCccc-----------cccCCHHHHHHHH
Confidence 34466789999999999999999999532 1 22222222211110 000000 0111233667888
Q ss_pred hcCCCCccCchhHHHHHH
Q 011044 463 ECTVESPIRESTQRKLLQ 480 (495)
Q Consensus 463 ~C~~~~p~~Rp~m~~v~~ 480 (495)
.|...+|.+||++.|+++
T Consensus 250 ~~L~~dP~~Rpta~e~L~ 267 (444)
T 3soa_A 250 KMLTINPSKRITAAEALK 267 (444)
T ss_dssp HHSCSSTTTSCCHHHHHH
T ss_pred HHcCCChhHCCCHHHHhc
Confidence 999999999999999964
No 355
>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A
Probab=96.52 E-value=0.00051 Score=63.98 Aligned_cols=95 Identities=16% Similarity=0.079 Sum_probs=50.5
Q ss_pred cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCC---Ccce-----eeecccccccc-ccccchhhHHH
Q 011044 385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSI---SVME-----VVDANLLSWKD-KHFMTKEQCMS 455 (495)
Q Consensus 385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~---~~~~-----v~d~~l~~~~~-~~~~~~~~~~~ 455 (495)
..+.++||||+|+++.|++||+.|....-. ...+...++..-.. .... -.++.+..... .+.........
T Consensus 177 ~~~~~~DiwslG~il~~l~~g~~pf~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (288)
T 1ob3_A 177 KYSTTIDIWSVGCIFAEMVNGTPLFPGVSE-ADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKGLDE 255 (288)
T ss_dssp SCCTHHHHHHHHHHHHHHHHSSCSCCCSSH-HHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCCCCCGGGTCCSCCH
T ss_pred CCCcHHHHHHHHHHHHHHHhCCCCCCCCCH-HHHHHHHHHHHCCCChhhchhhhcccccccccccccCccHHHHhhhcCH
Confidence 356789999999999999999998643110 01111111111000 0000 01111110000 00000011223
Q ss_pred HHHHHHhhcCCCCccCchhHHHHHH
Q 011044 456 FVFNLAMECTVESPIRESTQRKLLQ 480 (495)
Q Consensus 456 ~~~~~~~~C~~~~p~~Rp~m~~v~~ 480 (495)
.+.++...|...+|.+||++.|+++
T Consensus 256 ~~~~li~~~L~~dP~~Rpt~~e~l~ 280 (288)
T 1ob3_A 256 SGIDLLSKMLKLDPNQRITAKQALE 280 (288)
T ss_dssp HHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred HHHHHHHHHcCCCcccCCCHHHHhc
Confidence 4678899999999999999999864
No 356
>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*
Probab=96.47 E-value=0.00051 Score=65.04 Aligned_cols=94 Identities=17% Similarity=0.170 Sum_probs=50.0
Q ss_pred cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCC---c-cee-----eeccccccccc------cccc
Q 011044 385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSIS---V-MEV-----VDANLLSWKDK------HFMT 449 (495)
Q Consensus 385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~---~-~~v-----~d~~l~~~~~~------~~~~ 449 (495)
..+.++||||+|+++.|++||+.|....- .......+....... . ..+ .++.+...... ....
T Consensus 185 ~~~~~~DiwslG~il~el~~g~~pf~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (317)
T 2pmi_A 185 TYSTSIDIWSCGCILAEMITGKPLFPGTN--DEEQLKLIFDIMGTPNESLWPSVTKLPKYNPNIQQRPPRDLRQVLQPHT 262 (317)
T ss_dssp CCCTHHHHHHHHHHHHHHHHSSCSCCCSS--HHHHHHHHHHHHCSCCTTTCGGGGGCTTCCTTCCCCCCCCSHHHHGGGC
T ss_pred CCCcHHHHHHHHHHHHHHHhCCCCCCCCC--hHHHHHHHHHHhCCCChhHhhhhhhhhhcccccccccchhHHHhhcccc
Confidence 35678999999999999999999854211 111111121111110 0 000 00000000000 0000
Q ss_pred hhhHHHHHHHHHhhcCCCCccCchhHHHHHH
Q 011044 450 KEQCMSFVFNLAMECTVESPIRESTQRKLLQ 480 (495)
Q Consensus 450 ~~~~~~~~~~~~~~C~~~~p~~Rp~m~~v~~ 480 (495)
.+.....+.++...|...+|.+||++.|+++
T Consensus 263 ~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~ 293 (317)
T 2pmi_A 263 KEPLDGNLMDFLHGLLQLNPDMRLSAKQALH 293 (317)
T ss_dssp SSCCCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred cccCCHHHHHHHHHHCCCCcccCCCHHHHhC
Confidence 0011234778899999999999999999853
No 357
>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}
Probab=96.44 E-value=0.00037 Score=66.24 Aligned_cols=75 Identities=15% Similarity=0.214 Sum_probs=47.5
Q ss_pred ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044 384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME 463 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~ 463 (495)
...+.++||||+|+++.|+++|..|.... ............ +. ........+.++...
T Consensus 251 ~~~~~~~Di~slG~il~el~~~~~~~~~~-------~~~~~~~~~~~~-----~~----------~~~~~~~~~~~li~~ 308 (332)
T 3qd2_B 251 NNYSHKVDIFSLGLILFELLYSFSTQMER-------VRIITDVRNLKF-----PL----------LFTQKYPQEHMMVQD 308 (332)
T ss_dssp CCCCTHHHHHHHHHHHHHHHSCCCCHHHH-------HHHHHHHHTTCC-----CH----------HHHHHCHHHHHHHHH
T ss_pred CCCcchhhHHHHHHHHHHHHHcCCChhHH-------HHHHHHhhccCC-----Cc----------ccccCChhHHHHHHH
Confidence 34677899999999999999987663211 111111111110 00 011222335678899
Q ss_pred cCCCCccCchhHHHHHH
Q 011044 464 CTVESPIRESTQRKLLQ 480 (495)
Q Consensus 464 C~~~~p~~Rp~m~~v~~ 480 (495)
|.+.+|.+||++.|+++
T Consensus 309 ~l~~~p~~Rps~~~~l~ 325 (332)
T 3qd2_B 309 MLSPSPTERPEATDIIE 325 (332)
T ss_dssp HHCSSGGGSCCHHHHHH
T ss_pred HccCCCCcCCCHHHHhh
Confidence 99999999999999875
No 358
>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}
Probab=96.43 E-value=0.00076 Score=65.70 Aligned_cols=90 Identities=13% Similarity=0.151 Sum_probs=49.6
Q ss_pred ccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHH--HhCCC-ccee--eecccc-----ccccc-cc-cchhhH
Q 011044 386 VSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVND--LLSIS-VMEV--VDANLL-----SWKDK-HF-MTKEQC 453 (495)
Q Consensus 386 ~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~--~~~~~-~~~v--~d~~l~-----~~~~~-~~-~~~~~~ 453 (495)
.+.++||||+|+++.|+++|+.|... ......+.+. ..... ...+ .++... ..... +. ......
T Consensus 219 ~~~~~DiwslG~il~ell~g~~pf~~----~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (383)
T 3eb0_A 219 YTPSIDLWSIGCVFGELILGKPLFSG----ETSIDQLVRIIQIMGTPTKEQMIRMNPHYTEVRFPTLKAKDWRKILPEGT 294 (383)
T ss_dssp CCTHHHHHHHHHHHHHHHHSSCSSCC----SSHHHHHHHHHHHHCCCCHHHHHHHCTTC--CCCCCCCCCCHHHHSCTTC
T ss_pred CCcchhhhhHHHHHHHHHhCCCCCCC----CChHHHHHHHHHHhCCCCHHHHHHhCcccccccCCccCcccHHhhCCCCC
Confidence 56789999999999999999998542 2222121111 11100 0000 000000 00000 00 000112
Q ss_pred HHHHHHHHhhcCCCCccCchhHHHHH
Q 011044 454 MSFVFNLAMECTVESPIRESTQRKLL 479 (495)
Q Consensus 454 ~~~~~~~~~~C~~~~p~~Rp~m~~v~ 479 (495)
...+.++...|...+|.+||++.|++
T Consensus 295 ~~~~~~li~~~L~~dP~~R~t~~e~l 320 (383)
T 3eb0_A 295 PSLAIDLLEQILRYEPDLRINPYEAM 320 (383)
T ss_dssp CHHHHHHHHHHCCSSGGGSCCHHHHH
T ss_pred CHHHHHHHHHHccCChhhCCCHHHHh
Confidence 33477899999999999999999996
No 359
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7
Probab=96.42 E-value=0.0011 Score=63.91 Aligned_cols=78 Identities=10% Similarity=0.164 Sum_probs=49.9
Q ss_pred ccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhcC
Q 011044 386 VSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECT 465 (495)
Q Consensus 386 ~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C~ 465 (495)
.+.++||||||+++.|++||+.|...... ......+.+...... +.+ .......+.++...|.
T Consensus 239 ~~~~~DvwslG~il~ell~g~~pf~~~~~-~~~~~~~~~~~~~~~------~~~----------~~~~~~~~~~li~~~L 301 (355)
T 1vzo_A 239 HDKAVDWWSLGVLMYELLTGASPFTVDGE-KNSQAEISRRILKSE------PPY----------PQEMSALAKDLIQRLL 301 (355)
T ss_dssp -CTHHHHHHHHHHHHHHHHSSCTTSCTTS-CCCHHHHHHHHHHCC------CCC----------CTTSCHHHHHHHHHHT
T ss_pred CCchhhHHHHHHHHHHHHHCCCCCccCCc-cchHHHHHHHHhccC------CCC----------CcccCHHHHHHHHHHh
Confidence 46689999999999999999999653211 223333333322211 000 0011223667899999
Q ss_pred CCCccCch-----hHHHHHH
Q 011044 466 VESPIRES-----TQRKLLQ 480 (495)
Q Consensus 466 ~~~p~~Rp-----~m~~v~~ 480 (495)
..+|.+|| ++.|+++
T Consensus 302 ~~dP~~R~~~~~~s~~ell~ 321 (355)
T 1vzo_A 302 MKDPKKRLGCGPRDADEIKE 321 (355)
T ss_dssp CSSGGGSTTSSTTTHHHHHT
T ss_pred hhCHHHhcCCCCCCHHHHHc
Confidence 99999999 8888854
No 360
>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A
Probab=96.42 E-value=0.00021 Score=69.34 Aligned_cols=92 Identities=14% Similarity=0.071 Sum_probs=50.8
Q ss_pred ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHh---CCCcce----eeecc-------cccccc-cccc
Q 011044 384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLL---SISVME----VVDAN-------LLSWKD-KHFM 448 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~---~~~~~~----v~d~~-------l~~~~~-~~~~ 448 (495)
...+.++||||+|+++.|++||+.|.+.. +....+.... .....+ +-+.. +..... ....
T Consensus 217 ~~~~~~~DiwslG~il~el~~g~~pf~~~-----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (371)
T 4exu_A 217 MHYNQTVDIWSVGCIMAEMLTGKTLFKGK-----DYLDQLTQILKVTGVPGTEFVQKLNDKAAKSYIQSLPQTPRKDFTQ 291 (371)
T ss_dssp SCCCTTHHHHHHHHHHHHHHHSSCSCCCS-----SHHHHHHHHHHHHCCCCHHHHTTCSCHHHHHHHHHSCCCCCCCHHH
T ss_pred CCCCcHHhHHHHHHHHHHHHhCCCCCCCC-----ChHHHHHHHHHHhCCCcHHHHHHhhhhhhhhhhhccCCCcchhHHH
Confidence 34677899999999999999999996431 1112222111 000000 00000 000000 0000
Q ss_pred chhhHHHHHHHHHhhcCCCCccCchhHHHHHH
Q 011044 449 TKEQCMSFVFNLAMECTVESPIRESTQRKLLQ 480 (495)
Q Consensus 449 ~~~~~~~~~~~~~~~C~~~~p~~Rp~m~~v~~ 480 (495)
........+.++...|...+|.+||++.|+++
T Consensus 292 ~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 323 (371)
T 4exu_A 292 LFPRASPQAADLLEKMLELDVDKRLTAAQALT 323 (371)
T ss_dssp HSTTSCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred hccccChHHHHHHHHHCCCChhhcCCHHHHhc
Confidence 00112344778899999999999999999864
No 361
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...
Probab=96.40 E-value=0.00083 Score=66.37 Aligned_cols=93 Identities=10% Similarity=-0.004 Sum_probs=50.7
Q ss_pred cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCC----------Ccceeeeccccccccccc-cchhhH
Q 011044 385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSI----------SVMEVVDANLLSWKDKHF-MTKEQC 453 (495)
Q Consensus 385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~----------~~~~v~d~~l~~~~~~~~-~~~~~~ 453 (495)
..+.++|||||||++.||++|+.|...... ...+.+.++..-.. ...+..-+.+... .+. ......
T Consensus 233 ~~~~~~DiwSlG~il~ell~G~~pf~~~~~-~~~l~~i~~~lg~p~~~~~~~~~~~~~~~~~p~~~~~--~~~~~~~~~~ 309 (420)
T 1j1b_A 233 DYTSSIDVWSAGCVLAELLLGQPIFPGDSG-VDQLVEIIKVLGTPTREQIREMNPNYTEFKFPQIKAH--PWTKVFRPRT 309 (420)
T ss_dssp SCCTHHHHHHHHHHHHHHHHSSCSSCCSSH-HHHHHHHHHHHCSCCHHHHHHHCSCCCCCCCCCCCCC--CHHHHSCTTS
T ss_pred CCCchhhhHHHHHHHHHHHhCCCCCCCCCH-HHHHHHHHHHhCCCCHHHHHhhChhhhhhccCccCCC--CHHHhcCCCC
Confidence 456789999999999999999998542110 01122222211000 0001100111000 000 000011
Q ss_pred HHHHHHHHhhcCCCCccCchhHHHHHH
Q 011044 454 MSFVFNLAMECTVESPIRESTQRKLLQ 480 (495)
Q Consensus 454 ~~~~~~~~~~C~~~~p~~Rp~m~~v~~ 480 (495)
...+.++...|...+|.+||++.|+++
T Consensus 310 ~~~~~~Li~~~L~~dP~~R~t~~e~l~ 336 (420)
T 1j1b_A 310 PPEAIALCSRLLEYTPTARLTPLEACA 336 (420)
T ss_dssp CHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred CHHHHHHHHHhccCChhHCCCHHHHhC
Confidence 234778999999999999999999863
No 362
>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}
Probab=96.39 E-value=0.00086 Score=63.17 Aligned_cols=66 Identities=12% Similarity=0.275 Sum_probs=45.4
Q ss_pred CCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhcCCC
Q 011044 388 TNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECTVE 467 (495)
Q Consensus 388 ~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~~ 467 (495)
.++||||+|+++.|++||+.|.+.. ......... + .......+.++...|.+.
T Consensus 218 ~~~Di~slG~il~~l~~g~~pf~~~-------~~~~~~~~~----------~----------~~~~~~~~~~li~~~l~~ 270 (312)
T 2iwi_A 218 LPATVWSLGILLYDMVCGDIPFERD-------QEILEAELH----------F----------PAHVSPDCCALIRRCLAP 270 (312)
T ss_dssp HHHHHHHHHHHHHHHHHSSCSCCSH-------HHHHHTCCC----------C----------CTTSCHHHHHHHHHHTCS
T ss_pred ccchHHHHHHHHHHHHHCCCCCCCh-------HHHhhhccC----------C----------cccCCHHHHHHHHHHccC
Confidence 4789999999999999999995421 111110000 0 001122366788999999
Q ss_pred CccCchhHHHHHH
Q 011044 468 SPIRESTQRKLLQ 480 (495)
Q Consensus 468 ~p~~Rp~m~~v~~ 480 (495)
+|.+||++.|+++
T Consensus 271 ~p~~Rps~~e~l~ 283 (312)
T 2iwi_A 271 KPSSRPSLEEILL 283 (312)
T ss_dssp STTTSCCHHHHHH
T ss_pred ChhhCcCHHHHhc
Confidence 9999999999975
No 363
>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}
Probab=96.38 E-value=0.00087 Score=65.61 Aligned_cols=95 Identities=17% Similarity=0.096 Sum_probs=50.6
Q ss_pred cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcc--eeeeccccccc----ccc---ccchhhHHH
Q 011044 385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVM--EVVDANLLSWK----DKH---FMTKEQCMS 455 (495)
Q Consensus 385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~--~v~d~~l~~~~----~~~---~~~~~~~~~ 455 (495)
..+.++||||+||++.||++|+.|....-. ...+...++..-..... .-.+++..... ... .........
T Consensus 218 ~~~~~~DiwSlG~il~ell~g~~pf~~~~~-~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (394)
T 4e7w_A 218 NYTTNIDIWSTGCVMAELMQGQPLFPGESG-IDQLVEIIKVLGTPSREQIKTMNPNYMEHKFPQIRPHPFSKVFRPRTPP 296 (394)
T ss_dssp SCCTHHHHHHHHHHHHHHHHSSCSSCCSSH-HHHHHHHHHHHCCCCHHHHHHHCGGGSSSCCCCCCCCCHHHHSCTTCCH
T ss_pred CCCcHHHHHHHHHHHHHHHhCCCCCCCCCH-HHHHHHHHHHhCCCCHHHHHhhChhhhhhccccccCCcHHHhccccCCH
Confidence 356789999999999999999998542110 01111222111000000 00011110000 000 000011223
Q ss_pred HHHHHHhhcCCCCccCchhHHHHHH
Q 011044 456 FVFNLAMECTVESPIRESTQRKLLQ 480 (495)
Q Consensus 456 ~~~~~~~~C~~~~p~~Rp~m~~v~~ 480 (495)
.+.++...|...+|.+||++.|+++
T Consensus 297 ~~~~li~~~L~~dP~~R~t~~e~l~ 321 (394)
T 4e7w_A 297 DAIDLISRLLEYTPSARLTAIEALC 321 (394)
T ss_dssp HHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred HHHHHHHHHhCCChhhCCCHHHHhc
Confidence 5788999999999999999999864
No 364
>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...
Probab=96.38 E-value=0.00078 Score=62.94 Aligned_cols=91 Identities=16% Similarity=0.158 Sum_probs=49.4
Q ss_pred ccCCCcceeehhhhhhcccCCCCCccccCCCCCHHH---HHHHHh-CCC-c-cee-----eeccccccccccc-cchhhH
Q 011044 386 VSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRR---WVNDLL-SIS-V-MEV-----VDANLLSWKDKHF-MTKEQC 453 (495)
Q Consensus 386 ~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~---wv~~~~-~~~-~-~~v-----~d~~l~~~~~~~~-~~~~~~ 453 (495)
.+.++||||+|+++.|++||+.|... ...... .++..- +.. . ..+ ..+.+..+..... ......
T Consensus 181 ~~~~~Di~slG~~l~~l~~g~~pf~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (299)
T 2r3i_A 181 YSTAVDIWSLGCIFAEMVTRRALFPG----DSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPL 256 (299)
T ss_dssp CCTHHHHHHHHHHHHHHHHSSCSCCC----SSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTSCCCCCCCHHHHSTTC
T ss_pred CChHHHHHHHHHHHHHHHhCCCCCCC----ccHHHHHHHHHHHhCCCchhhhhHhhcCcccchhhhcccchhhHhhCCCC
Confidence 56789999999999999999998542 211111 111110 000 0 000 0000000000000 000011
Q ss_pred HHHHHHHHhhcCCCCccCchhHHHHHH
Q 011044 454 MSFVFNLAMECTVESPIRESTQRKLLQ 480 (495)
Q Consensus 454 ~~~~~~~~~~C~~~~p~~Rp~m~~v~~ 480 (495)
...+.++...|...+|.+||++.|+++
T Consensus 257 ~~~~~~li~~~L~~dP~~Rpt~~~~l~ 283 (299)
T 2r3i_A 257 DEDGRSLLSQMLHYDPNKRISAKAALA 283 (299)
T ss_dssp CHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred CHHHHHHHHHhcCcCcccCCCHHHHhc
Confidence 234678899999999999999999864
No 365
>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}
Probab=96.38 E-value=0.00038 Score=66.98 Aligned_cols=92 Identities=13% Similarity=0.076 Sum_probs=50.6
Q ss_pred ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHh---CCCc----ceeeecc-------cccc-cccccc
Q 011044 384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLL---SISV----MEVVDAN-------LLSW-KDKHFM 448 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~---~~~~----~~v~d~~-------l~~~-~~~~~~ 448 (495)
...+.++||||+|+++.|++||+.|.... +....+.... .... ..+.+.. +... ......
T Consensus 199 ~~~~~~~Di~slG~il~el~~g~~pf~~~-----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (353)
T 3coi_A 199 MHYNQTVDIWSVGCIMAEMLTGKTLFKGK-----DYLDQLTQILKVTGVPGTEFVQKLNDKAAKSYIQSLPQTPRKDFTQ 273 (353)
T ss_dssp SCCCTTHHHHHHHHHHHHHHHSSCSSBSS-----CHHHHHHHHHHHHCBCCHHHHTTCSCHHHHHHHHTSCBCSSCCTTT
T ss_pred CCCCchhhHHHHHHHHHHHHhCCCCCCCC-----CHHHHHHHHHHHhCCCCHHHHHHHhhHHHHHHHHhCcCCCCccHHH
Confidence 34567899999999999999999996431 1111111111 0000 0000000 0000 000000
Q ss_pred chhhHHHHHHHHHhhcCCCCccCchhHHHHHH
Q 011044 449 TKEQCMSFVFNLAMECTVESPIRESTQRKLLQ 480 (495)
Q Consensus 449 ~~~~~~~~~~~~~~~C~~~~p~~Rp~m~~v~~ 480 (495)
........+.++...|...+|.+||++.|+++
T Consensus 274 ~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~ 305 (353)
T 3coi_A 274 LFPRASPQAADLLEKMLELDVDKRLTAAQALT 305 (353)
T ss_dssp TCTTSCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred hcCCcCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence 01122344778899999999999999999864
No 366
>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*
Probab=96.36 E-value=0.0015 Score=65.39 Aligned_cols=27 Identities=22% Similarity=0.171 Sum_probs=23.3
Q ss_pred ccccCCCcceeehhhhhhcccCCCCCc
Q 011044 384 GRVSTNGDIYNFGIMIMETFTAKKPTD 410 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~tgk~p~~ 410 (495)
...+.++||||+||++.||++|+.|..
T Consensus 238 ~~~~~~~DiwSlG~il~ell~g~~pF~ 264 (464)
T 3ttj_A 238 MGYKENVDIWSVGCIMGEMVRHKILFP 264 (464)
T ss_dssp CCCCTTHHHHHHHHHHHHHHHSSCSSC
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCCC
Confidence 346678999999999999999999853
No 367
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*
Probab=96.34 E-value=0.00074 Score=64.46 Aligned_cols=75 Identities=15% Similarity=0.186 Sum_probs=48.8
Q ss_pred cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhc
Q 011044 385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMEC 464 (495)
Q Consensus 385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C 464 (495)
..+.++||||||+++.|++||+.|.+. ............... .+-. .....+.++...|
T Consensus 217 ~~~~~~Di~slG~il~~l~~g~~pf~~-----~~~~~~~~~~~~~~~------~~~~----------~~~~~~~~li~~~ 275 (335)
T 2owb_A 217 GHSFEVDVWSIGCIMYTLLVGKPPFET-----SCLKETYLRIKKNEY------SIPK----------HINPVAASLIQKM 275 (335)
T ss_dssp CBCTHHHHHHHHHHHHHHHHSSCTTCC-----SSHHHHHHHHHHTCC------CCCT----------TSCHHHHHHHHHH
T ss_pred CCCchhhHHHHHHHHHHHHHCcCCCCC-----CCHHHHHHHHhcCCC------CCCc----------cCCHHHHHHHHHH
Confidence 356789999999999999999999642 122222222111110 0000 1112366788899
Q ss_pred CCCCccCchhHHHHHH
Q 011044 465 TVESPIRESTQRKLLQ 480 (495)
Q Consensus 465 ~~~~p~~Rp~m~~v~~ 480 (495)
...+|.+||++.|+++
T Consensus 276 l~~dp~~Rps~~ell~ 291 (335)
T 2owb_A 276 LQTDPTARPTINELLN 291 (335)
T ss_dssp TCSSGGGSCCGGGGGG
T ss_pred ccCChhHCcCHHHHhc
Confidence 9999999999999864
No 368
>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*
Probab=96.34 E-value=0.0004 Score=67.07 Aligned_cols=92 Identities=14% Similarity=0.169 Sum_probs=50.4
Q ss_pred ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHh---CC-Cccee-----------eecccccccc-ccc
Q 011044 384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLL---SI-SVMEV-----------VDANLLSWKD-KHF 447 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~---~~-~~~~v-----------~d~~l~~~~~-~~~ 447 (495)
...+.++||||+|+++.|++||+.|.... +....++... .. ...++ ....+..... ...
T Consensus 209 ~~~~~~~DiwslG~il~~l~~g~~pf~~~-----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (362)
T 3pg1_A 209 KGFTKLVDMWSAGCVMAEMFNRKALFRGS-----TFYNQLNKIVEVVGTPKIEDVVMFSSPSARDYLRNSLSNVPARAWT 283 (362)
T ss_dssp TTCCTHHHHHHHHHHHHHHHHSSCSCCCS-----SHHHHHHHHHHHHCCCCHHHHHHTSCHHHHHHTTTCCCCCCCCCHH
T ss_pred CCCCcHhHHHhHHHHHHHHHhCCCCCCCC-----CHHHHHHHHHHHcCCCChHHhhhccchhhhHHHHhhcccCChhhHH
Confidence 34567899999999999999999996431 1111111111 00 00000 0000000000 000
Q ss_pred cchhhHHHHHHHHHhhcCCCCccCchhHHHHHH
Q 011044 448 MTKEQCMSFVFNLAMECTVESPIRESTQRKLLQ 480 (495)
Q Consensus 448 ~~~~~~~~~~~~~~~~C~~~~p~~Rp~m~~v~~ 480 (495)
.........+.++...|.+.+|.+||++.|+++
T Consensus 284 ~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 316 (362)
T 3pg1_A 284 AVVPTADPVALDLIAKMLEFNPQRRISTEQALR 316 (362)
T ss_dssp HHSTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred hhCCCCCHHHHHHHHHHhcCChhhCCCHHHHHc
Confidence 000112234778999999999999999999864
No 369
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*
Probab=96.31 E-value=0.0013 Score=66.24 Aligned_cols=79 Identities=9% Similarity=0.066 Sum_probs=49.5
Q ss_pred cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhc
Q 011044 385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMEC 464 (495)
Q Consensus 385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C 464 (495)
..+.++||||+||++.|+++|+.|... . +-...++........ .-.+ ........+.++...|
T Consensus 203 ~~~~~~DiwslG~il~~ll~g~~pf~~----~-~~~~~~~~i~~~~~~-~~~~-----------~~~~~s~~~~~li~~~ 265 (484)
T 3nyv_A 203 TYDEKCDVWSTGVILYILLSGCPPFNG----A-NEYDILKKVEKGKYT-FELP-----------QWKKVSESAKDLIRKM 265 (484)
T ss_dssp CCCTHHHHHHHHHHHHHHHHSSCSSCC----S-SHHHHHHHHHHCCCC-CCSG-----------GGGGSCHHHHHHHHHH
T ss_pred CCCCcceeHHHHHHHHHHHHCCCCCCC----C-CHHHHHHHHHcCCCC-CCCc-----------ccccCCHHHHHHHHHH
Confidence 356789999999999999999999642 1 222222221111100 0000 0111123366788999
Q ss_pred CCCCccCchhHHHHHH
Q 011044 465 TVESPIRESTQRKLLQ 480 (495)
Q Consensus 465 ~~~~p~~Rp~m~~v~~ 480 (495)
...+|.+||++.|+++
T Consensus 266 L~~dp~~R~s~~e~l~ 281 (484)
T 3nyv_A 266 LTYVPSMRISARDALD 281 (484)
T ss_dssp TCSSGGGSCCHHHHHT
T ss_pred CCCChhHCcCHHHHhh
Confidence 9999999999999863
No 370
>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*
Probab=96.31 E-value=0.0011 Score=63.87 Aligned_cols=80 Identities=13% Similarity=0.256 Sum_probs=50.1
Q ss_pred ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044 384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME 463 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~ 463 (495)
...+.++|+||+||++.|+++|+.|... . +-............ . .++... ......+.++...
T Consensus 193 ~~~~~~~DiwslGvil~~ll~g~~Pf~~----~-~~~~~~~~i~~~~~-~-~~~~~~----------~~~s~~~~~li~~ 255 (361)
T 2yab_A 193 EPLGLEADMWSIGVITYILLSGASPFLG----D-TKQETLANITAVSY-D-FDEEFF----------SQTSELAKDFIRK 255 (361)
T ss_dssp CCCCTHHHHHHHHHHHHHHHHSCCSSCC----S-SHHHHHHHHHTTCC-C-CCHHHH----------TTSCHHHHHHHHH
T ss_pred CCCCccccHHHHHHHHHHHHhCCCCCCC----C-CHHHHHHHHHhcCC-C-CCchhc----------cCCCHHHHHHHHH
Confidence 3456789999999999999999999542 1 22233322222110 0 011110 0111235678889
Q ss_pred cCCCCccCchhHHHHHH
Q 011044 464 CTVESPIRESTQRKLLQ 480 (495)
Q Consensus 464 C~~~~p~~Rp~m~~v~~ 480 (495)
|...+|.+||++.|+++
T Consensus 256 ~L~~dP~~R~t~~e~l~ 272 (361)
T 2yab_A 256 LLVKETRKRLTIQEALR 272 (361)
T ss_dssp HSCSSTTTSCCHHHHHT
T ss_pred HCCCChhHCcCHHHHhc
Confidence 99999999999999863
No 371
>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A
Probab=96.30 E-value=0.001 Score=63.70 Aligned_cols=81 Identities=14% Similarity=0.128 Sum_probs=50.2
Q ss_pred ccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhcC
Q 011044 386 VSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECT 465 (495)
Q Consensus 386 ~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C~ 465 (495)
.+.++||||+||++.||++|+.|..... +......+......... . .... .......+.++...|.
T Consensus 197 ~~~~~DiwslG~il~ell~g~~Pf~~~~--~~~~~~~~~~i~~~~~~-~-~~~~----------~~~~s~~~~~li~~~L 262 (342)
T 2qr7_A 197 YDAACDIWSLGVLLYTMLTGYTPFANGP--DDTPEEILARIGSGKFS-L-SGGY----------WNSVSDTAKDLVSKML 262 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCSSCSST--TSCHHHHHHHHHHCCCC-C-CSTT----------TTTSCHHHHHHHHHHT
T ss_pred CCCccCeeeHhHHHHHHhcCCCCCCCCC--cCCHHHHHHHHccCCcc-c-Cccc----------cccCCHHHHHHHHHHC
Confidence 4567999999999999999999965321 12333333322221110 0 0000 0011223667888999
Q ss_pred CCCccCchhHHHHHH
Q 011044 466 VESPIRESTQRKLLQ 480 (495)
Q Consensus 466 ~~~p~~Rp~m~~v~~ 480 (495)
..+|.+||++.++++
T Consensus 263 ~~dP~~R~t~~~il~ 277 (342)
T 2qr7_A 263 HVDPHQRLTAALVLR 277 (342)
T ss_dssp CSSTTTSCCHHHHTT
T ss_pred CCChhHCcCHHHHhc
Confidence 999999999999853
No 372
>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...
Probab=96.30 E-value=0.0011 Score=64.13 Aligned_cols=93 Identities=15% Similarity=0.153 Sum_probs=50.5
Q ss_pred ccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcce----eeecc---cc-c--cccc--cccchhhH
Q 011044 386 VSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVME----VVDAN---LL-S--WKDK--HFMTKEQC 453 (495)
Q Consensus 386 ~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~----v~d~~---l~-~--~~~~--~~~~~~~~ 453 (495)
.+.++||||+|+++.|++||+.|..... .......+.........+ +.+.. .. . .... ........
T Consensus 209 ~~~~~DiwslG~il~ell~g~~pf~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (364)
T 3qyz_A 209 YTKSIDIWSVGCILAEMLSNRPIFPGKH--YLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNA 286 (364)
T ss_dssp CSTHHHHHHHHHHHHHHHHSSCSSCCSS--GGGHHHHHHHHHCSCCHHHHHTCCCHHHHHHHHTSCCCCCCCHHHHCTTS
T ss_pred CCcchhHHHHHHHHHHHHHCCCCCCCCC--hHHHHHHHHHHhCCCCHHHHHHhhhhhHHHHHHhcCCccCCCHHHhCCCC
Confidence 5678999999999999999999864321 112222222211111000 00000 00 0 0000 00000011
Q ss_pred HHHHHHHHhhcCCCCccCchhHHHHHH
Q 011044 454 MSFVFNLAMECTVESPIRESTQRKLLQ 480 (495)
Q Consensus 454 ~~~~~~~~~~C~~~~p~~Rp~m~~v~~ 480 (495)
...+.++...|...+|.+||++.|+++
T Consensus 287 ~~~~~~li~~~L~~dP~~R~t~~e~l~ 313 (364)
T 3qyz_A 287 DSKALDLLDKMLTFNPHKRIEVEQALA 313 (364)
T ss_dssp CHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred CHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence 234778899999999999999999964
No 373
>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*
Probab=96.26 E-value=0.00065 Score=65.25 Aligned_cols=93 Identities=13% Similarity=0.089 Sum_probs=50.2
Q ss_pred ccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCC----cceeeecccccccc---ccccchhhH-----
Q 011044 386 VSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSIS----VMEVVDANLLSWKD---KHFMTKEQC----- 453 (495)
Q Consensus 386 ~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~----~~~v~d~~l~~~~~---~~~~~~~~~----- 453 (495)
.+.++||||+|+++.|++||+.|....- .......+....... ...+-+........ .......+.
T Consensus 206 ~~~~~DiwslG~il~ell~g~~pf~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (351)
T 3mi9_A 206 YGPPIDLWGAGCIMAEMWTRSPIMQGNT--EQHQLALISQLCGSITPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYV 283 (351)
T ss_dssp CCTHHHHHHHHHHHHHHHHSSCSCCCSS--HHHHHHHHHHHHCCCCTTTSTTGGGCGGGTSSCCCSSCCCCHHHHHHHHH
T ss_pred CCcHhHHHHHHHHHHHHHhCCCCCCCCC--hHHHHHHHHHHhCCCChhhccccccchhhcccccccccccCHHHHhhhcc
Confidence 5678999999999999999999864321 111112222211110 00000000000000 000001111
Q ss_pred -HHHHHHHHhhcCCCCccCchhHHHHHH
Q 011044 454 -MSFVFNLAMECTVESPIRESTQRKLLQ 480 (495)
Q Consensus 454 -~~~~~~~~~~C~~~~p~~Rp~m~~v~~ 480 (495)
-..+.++...|...+|.+||++.|+++
T Consensus 284 ~~~~~~~li~~~L~~dP~~R~t~~e~l~ 311 (351)
T 3mi9_A 284 RDPYALDLIDKLLVLDPAQRIDSDDALN 311 (351)
T ss_dssp CCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred CChHHHHHHHHHhcCChhhCCCHHHHhC
Confidence 123678899999999999999999864
No 374
>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*
Probab=96.22 E-value=0.0009 Score=64.23 Aligned_cols=95 Identities=11% Similarity=0.050 Sum_probs=50.3
Q ss_pred ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCC-----cceeeecccccc------cc--ccccch
Q 011044 384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSIS-----VMEVVDANLLSW------KD--KHFMTK 450 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~-----~~~v~d~~l~~~------~~--~~~~~~ 450 (495)
...+.++||||+|+++.|+++|+.|....- .......+....... ...+.+.+.... .. ......
T Consensus 198 ~~~~~~~Di~slG~il~~l~~g~~pf~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (353)
T 2b9h_A 198 AKYSRAMDVWSCGCILAELFLRRPIFPGRD--YRHQLLLIFGIIGTPHSDNDLRCIESPRAREYIKSLPMYPAAPLEKMF 275 (353)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHSSCSCCCSS--HHHHHHHHHHHHCCCCSTTTTTTCCCHHHHHHHHTSCCCCCCCHHHHS
T ss_pred CCccchhhHHHHHHHHHHHHhCCCCCCCCC--cHHHHHHHHHHhCCCchhccccccccchhhHHhhcccCCCCcchhhhc
Confidence 345678999999999999999999854211 000111111111100 000000000000 00 000000
Q ss_pred hhHHHHHHHHHhhcCCCCccCchhHHHHHH
Q 011044 451 EQCMSFVFNLAMECTVESPIRESTQRKLLQ 480 (495)
Q Consensus 451 ~~~~~~~~~~~~~C~~~~p~~Rp~m~~v~~ 480 (495)
......+.++...|...+|.+||++.|+++
T Consensus 276 ~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 305 (353)
T 2b9h_A 276 PRVNPKGIDLLQRMLVFDPAKRITAKEALE 305 (353)
T ss_dssp TTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred ccCCHHHHHHHHHhcCcCcccCCCHHHHhc
Confidence 112334678899999999999999999964
No 375
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*
Probab=96.22 E-value=0.0018 Score=65.28 Aligned_cols=79 Identities=11% Similarity=0.080 Sum_probs=49.6
Q ss_pred cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhc
Q 011044 385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMEC 464 (495)
Q Consensus 385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C 464 (495)
..+.++||||+||++.|+++|+.|... . +-...++........ . + .. ........+.++...|
T Consensus 198 ~~~~~~DiwslG~il~~ll~g~~pf~~----~-~~~~~~~~i~~~~~~-~-~--~~--------~~~~~s~~~~~li~~~ 260 (486)
T 3mwu_A 198 TYDEKCDVWSAGVILYILLSGTPPFYG----K-NEYDILKRVETGKYA-F-D--LP--------QWRTISDDAKDLIRKM 260 (486)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSSCSSCC----S-SHHHHHHHHHHTCCC-S-C--SG--------GGGGSCHHHHHHHHHH
T ss_pred CCCchhhHHHHHHHHHHHHhCCCCCCC----C-CHHHHHHHHHhCCCC-C-C--Cc--------ccCCCCHHHHHHHHHH
Confidence 356789999999999999999999542 1 222222222111100 0 0 00 0011122366888999
Q ss_pred CCCCccCchhHHHHHH
Q 011044 465 TVESPIRESTQRKLLQ 480 (495)
Q Consensus 465 ~~~~p~~Rp~m~~v~~ 480 (495)
...+|.+||++.|+++
T Consensus 261 L~~dp~~R~t~~~~l~ 276 (486)
T 3mwu_A 261 LTFHPSLRITATQCLE 276 (486)
T ss_dssp TCSSTTTSCCHHHHHH
T ss_pred cCCChhhCcCHHHHhc
Confidence 9999999999999965
No 376
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*
Probab=96.20 E-value=0.0019 Score=65.30 Aligned_cols=79 Identities=9% Similarity=0.099 Sum_probs=50.4
Q ss_pred cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhc
Q 011044 385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMEC 464 (495)
Q Consensus 385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C 464 (495)
..+.++||||+||++.|+++|+.|... .+-...++....... ....+. .......+.++...|
T Consensus 213 ~~~~~~DiwslG~il~~ll~g~~pf~~-----~~~~~~~~~i~~~~~-~~~~~~-----------~~~~s~~~~~li~~~ 275 (494)
T 3lij_A 213 KYDEKCDVWSIGVILFILLAGYPPFGG-----QTDQEILRKVEKGKY-TFDSPE-----------WKNVSEGAKDLIKQM 275 (494)
T ss_dssp CBCTHHHHHHHHHHHHHHHHSSCSSCC-----SSHHHHHHHHHHTCC-CCCSGG-----------GTTSCHHHHHHHHHH
T ss_pred cCCCchhHHHHHHHHHHHHhCCCCCCC-----CCHHHHHHHHHhCCC-CCCchh-----------cccCCHHHHHHHHHH
Confidence 466789999999999999999999542 222233332222111 000000 011122366788999
Q ss_pred CCCCccCchhHHHHHH
Q 011044 465 TVESPIRESTQRKLLQ 480 (495)
Q Consensus 465 ~~~~p~~Rp~m~~v~~ 480 (495)
...+|.+||++.|+++
T Consensus 276 L~~dp~~R~s~~e~l~ 291 (494)
T 3lij_A 276 LQFDSQRRISAQQALE 291 (494)
T ss_dssp TCSSTTTSCCHHHHHT
T ss_pred CCCChhhCccHHHHhc
Confidence 9999999999999963
No 377
>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=96.20 E-value=0.0017 Score=63.76 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=22.6
Q ss_pred ccCCCcceeehhhhhhcccCCCCCc
Q 011044 386 VSTNGDIYNFGIMIMETFTAKKPTD 410 (495)
Q Consensus 386 ~~~~~dvysfgilllE~~tgk~p~~ 410 (495)
.+.++||||+||++.||+||+.|..
T Consensus 213 ~~~~~DiwSlG~il~ell~g~~pf~ 237 (405)
T 3rgf_A 213 YTKAIDIWAIGCIFAELLTSEPIFH 237 (405)
T ss_dssp CCHHHHHHHHHHHHHHHHHSSCTTC
T ss_pred ccchhhhHHHHHHHHHHHhCCCCCC
Confidence 5678999999999999999999864
No 378
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}
Probab=96.16 E-value=0.0013 Score=66.54 Aligned_cols=79 Identities=10% Similarity=0.054 Sum_probs=50.5
Q ss_pred cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhc
Q 011044 385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMEC 464 (495)
Q Consensus 385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C 464 (495)
..+.++||||+||++.|+++|+.|... .+-...++........ .+... .......+.++...|
T Consensus 223 ~~~~~~DiwslG~il~~ll~g~~pf~~-----~~~~~~~~~i~~~~~~--~~~~~----------~~~~s~~~~~li~~~ 285 (504)
T 3q5i_A 223 KYNEKCDVWSCGVIMYILLCGYPPFGG-----QNDQDIIKKVEKGKYY--FDFND----------WKNISDEAKELIKLM 285 (504)
T ss_dssp CBCTHHHHHHHHHHHHHHHHSSCSSCC-----SSHHHHHHHHHHCCCC--CCHHH----------HTTSCHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHhCCCCCCC-----CCHHHHHHHHHcCCCC--CCccc----------cCCCCHHHHHHHHHH
Confidence 466789999999999999999999542 2223333322221110 00000 001122367788999
Q ss_pred CCCCccCchhHHHHHH
Q 011044 465 TVESPIRESTQRKLLQ 480 (495)
Q Consensus 465 ~~~~p~~Rp~m~~v~~ 480 (495)
...+|.+||++.|+++
T Consensus 286 L~~dp~~R~t~~e~l~ 301 (504)
T 3q5i_A 286 LTYDYNKRCTAEEALN 301 (504)
T ss_dssp TCSSTTTSCCHHHHHT
T ss_pred cCCChhHCCCHHHHhc
Confidence 9999999999999963
No 379
>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7
Probab=96.12 E-value=0.00077 Score=65.29 Aligned_cols=91 Identities=20% Similarity=0.201 Sum_probs=49.6
Q ss_pred cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHH---hCCCcceee----ec---c----cccc-ccccccc
Q 011044 385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDL---LSISVMEVV----DA---N----LLSW-KDKHFMT 449 (495)
Q Consensus 385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~---~~~~~~~v~----d~---~----l~~~-~~~~~~~ 449 (495)
..+.++||||+|+++.|+++|+.|... .... ..++.. ......+.. .. . +... .......
T Consensus 202 ~~~~~~DiwslG~il~ell~g~~pf~~----~~~~-~~l~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (367)
T 1cm8_A 202 RYTQTVDIWSVGCIMAEMITGKTLFKG----SDHL-DQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPELEKKDFASI 276 (367)
T ss_dssp CCCTTHHHHHHHHHHHHHHHSSCSSCC----SSHH-HHHHHHHHHHCCCCHHHHHTCSCHHHHHHHHHSCCCCCCCGGGT
T ss_pred CCChhhhHHHHHHHHHHHHhCCCCCCC----CCHH-HHHHHHHHhcCCCCHHHHHHhhhHHHHHHHHhCCCCCCCCHHHH
Confidence 456789999999999999999998542 2111 111111 111000000 00 0 0000 0000000
Q ss_pred hhhHHHHHHHHHhhcCCCCccCchhHHHHHH
Q 011044 450 KEQCMSFVFNLAMECTVESPIRESTQRKLLQ 480 (495)
Q Consensus 450 ~~~~~~~~~~~~~~C~~~~p~~Rp~m~~v~~ 480 (495)
.......+..+...|...+|.+||++.|+++
T Consensus 277 ~~~~~~~~~~ll~~mL~~dP~~R~t~~e~l~ 307 (367)
T 1cm8_A 277 LTNASPLAVNLLEKMLVLDAEQRVTAGEALA 307 (367)
T ss_dssp CTTCCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred CCCCCHHHHHHHHHHccCChhHCCCHHHHhc
Confidence 0112234677889999999999999999864
No 380
>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}
Probab=96.11 E-value=0.0013 Score=65.91 Aligned_cols=73 Identities=12% Similarity=0.201 Sum_probs=48.4
Q ss_pred cCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhcCC
Q 011044 387 STNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECTV 466 (495)
Q Consensus 387 ~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~ 466 (495)
+.++||||+||++.|+++|+.|.+.. +.....+........ .+. .....+.++...|..
T Consensus 194 ~~~~DiwSlGvil~elltG~~Pf~~~-----~~~~~~~~i~~~~~~---~p~-------------~~s~~~~~Li~~~L~ 252 (476)
T 2y94_A 194 GPEVDIWSSGVILYALLCGTLPFDDD-----HVPTLFKKICDGIFY---TPQ-------------YLNPSVISLLKHMLQ 252 (476)
T ss_dssp SHHHHHHHHHHHHHHHHHSSCSSCCS-----SSHHHHHHHHTTCCC---CCT-------------TCCHHHHHHHHHHTC
T ss_pred CCcceehhhHHHHHHHhhCCCCCCCC-----CHHHHHHHHhcCCcC---CCc-------------cCCHHHHHHHHHHcC
Confidence 45799999999999999999996531 222333322221100 010 011236678889999
Q ss_pred CCccCchhHHHHHH
Q 011044 467 ESPIRESTQRKLLQ 480 (495)
Q Consensus 467 ~~p~~Rp~m~~v~~ 480 (495)
.+|.+||++.|+++
T Consensus 253 ~dP~~Rpt~~eil~ 266 (476)
T 2y94_A 253 VDPMKRATIKDIRE 266 (476)
T ss_dssp SSTTTSCCHHHHHT
T ss_pred CCchhCcCHHHHHh
Confidence 99999999999964
No 381
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=96.06 E-value=0.0012 Score=62.00 Aligned_cols=73 Identities=8% Similarity=0.135 Sum_probs=47.2
Q ss_pred ccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhcC
Q 011044 386 VSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECT 465 (495)
Q Consensus 386 ~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C~ 465 (495)
.+.++|+||+||++.||+||+.|.. +. +.....+....... .+ ...+ . ....++...|.
T Consensus 211 y~~~~DiWSlGvilyeml~G~~PF~----~~-~~~~~~~~i~~~~~-~~-p~~~----------s----~~~~dli~~lL 269 (311)
T 4aw0_A 211 ACKSSDLWALGCIIYQLVAGLPPFR----AG-NEGLIFAKIIKLEY-DF-PEKF----------F----PKARDLVEKLL 269 (311)
T ss_dssp BCHHHHHHHHHHHHHHHHHSSCSSC----CS-SHHHHHHHHHHTCC-CC-CTTC----------C----HHHHHHHHHHS
T ss_pred CCcHHHHHHHHHHHHHHHhCCCCCC----CC-CHHHHHHHHHcCCC-CC-Cccc----------C----HHHHHHHHHHc
Confidence 4567999999999999999999953 22 22233332222211 00 1111 1 12556788999
Q ss_pred CCCccCchhHHHHH
Q 011044 466 VESPIRESTQRKLL 479 (495)
Q Consensus 466 ~~~p~~Rp~m~~v~ 479 (495)
..+|.+||+..|+.
T Consensus 270 ~~dp~~R~t~~e~~ 283 (311)
T 4aw0_A 270 VLDATKRLGCEEME 283 (311)
T ss_dssp CSSGGGSTTSGGGT
T ss_pred cCCHhHCcChHHHc
Confidence 99999999999863
No 382
>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*
Probab=96.02 E-value=0.0021 Score=61.87 Aligned_cols=24 Identities=17% Similarity=0.452 Sum_probs=21.7
Q ss_pred ccCCCcceeehhhhhhcccCCCCC
Q 011044 386 VSTNGDIYNFGIMIMETFTAKKPT 409 (495)
Q Consensus 386 ~~~~~dvysfgilllE~~tgk~p~ 409 (495)
.+.++|+||+||++.||+||+.|.
T Consensus 224 y~~~~DiWSlG~il~ell~G~~Pf 247 (361)
T 4f9c_A 224 QTTAIDMWSAGVIFLSLLSGRYPF 247 (361)
T ss_dssp CCTHHHHHHHHHHHHHHHHTCSSS
T ss_pred CCCccchhhhHHHHHHHHHCCCCC
Confidence 456789999999999999999995
No 383
>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A
Probab=96.00 E-value=0.0017 Score=60.63 Aligned_cols=77 Identities=21% Similarity=0.317 Sum_probs=46.6
Q ss_pred cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhc
Q 011044 385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMEC 464 (495)
Q Consensus 385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C 464 (495)
..+.++||||+|+++.|+++ |.. .+.+-....+....... . ..+.+ .......+.++...|
T Consensus 207 ~~~~~~Di~slG~il~~l~~---p~~----~~~~~~~~~~~~~~~~~-~-~~~~~----------~~~~~~~~~~li~~~ 267 (303)
T 1zy4_A 207 HYNEKIDMYSLGIIFFEMIY---PFS----TGMERVNILKKLRSVSI-E-FPPDF----------DDNKMKVEKKIIRLL 267 (303)
T ss_dssp CCCTHHHHHHHHHHHHHHHS---CCS----SHHHHHHHHHHHHSTTC-C-CCTTC----------CTTTSHHHHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHHh---ccC----CchhHHHHHHhcccccc-c-cCccc----------cccchHHHHHHHHHH
Confidence 46778999999999999998 321 11111222222211110 0 00111 112233467889999
Q ss_pred CCCCccCchhHHHHHH
Q 011044 465 TVESPIRESTQRKLLQ 480 (495)
Q Consensus 465 ~~~~p~~Rp~m~~v~~ 480 (495)
...+|.+||++.++++
T Consensus 268 l~~dp~~Rps~~~ll~ 283 (303)
T 1zy4_A 268 IDHDPNKRPGARTLLN 283 (303)
T ss_dssp TCSSGGGSCCHHHHHH
T ss_pred HhcCcccCcCHHHHhC
Confidence 9999999999999975
No 384
>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...
Probab=95.95 E-value=0.0038 Score=59.54 Aligned_cols=76 Identities=11% Similarity=0.167 Sum_probs=48.8
Q ss_pred CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044 383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM 462 (495)
Q Consensus 383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~ 462 (495)
....+.++|+||+|+++.||++|+.|... .+.....+....... .+-. .....+..+..
T Consensus 179 ~~~~~~~~DiwslG~il~ell~g~~Pf~~-----~~~~~~~~~i~~~~~------~~p~----------~~s~~~~~li~ 237 (337)
T 1o6l_A 179 DNDYGRAVDWWGLGVVMYEMMCGRLPFYN-----QDHERLFELILMEEI------RFPR----------TLSPEAKSLLA 237 (337)
T ss_dssp SSCBCTTHHHHHHHHHHHHHHHSSCSSCC-----SSHHHHHHHHHHCCC------CCCT----------TSCHHHHHHHH
T ss_pred CCCCCchhhcccchhHHHHHhcCCCCCCC-----CCHHHHHHHHHcCCC------CCCC----------CCCHHHHHHHH
Confidence 34467789999999999999999999532 222233332222111 0000 01123567788
Q ss_pred hcCCCCccCch-----hHHHHH
Q 011044 463 ECTVESPIRES-----TQRKLL 479 (495)
Q Consensus 463 ~C~~~~p~~Rp-----~m~~v~ 479 (495)
.|...+|.+|| ++.|+.
T Consensus 238 ~lL~~dP~~R~g~~~~~~~ei~ 259 (337)
T 1o6l_A 238 GLLKKDPKQRLGGGPSDAKEVM 259 (337)
T ss_dssp HHTCSSTTTSTTCSTTTHHHHH
T ss_pred HHhhcCHHHhcCCCCCCHHHHH
Confidence 99999999999 788774
No 385
>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}
Probab=95.94 E-value=0.0017 Score=63.32 Aligned_cols=27 Identities=15% Similarity=0.268 Sum_probs=23.1
Q ss_pred ccccCCCcceeehhhhhhcccCCCCCc
Q 011044 384 GRVSTNGDIYNFGIMIMETFTAKKPTD 410 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~tgk~p~~ 410 (495)
...+.++||||+||++.||++|+.|..
T Consensus 206 ~~~~~~~DiwSlG~il~ell~g~~pf~ 232 (388)
T 3oz6_A 206 TKYTKGIDMWSLGCILGEILCGKPIFP 232 (388)
T ss_dssp CCCCTHHHHHHHHHHHHHHHHSSCSCC
T ss_pred CCCCChhhHHHHHHHHHHHHhCCCCCC
Confidence 345678999999999999999998853
No 386
>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7
Probab=95.87 E-value=0.0014 Score=62.81 Aligned_cols=91 Identities=12% Similarity=0.093 Sum_probs=49.1
Q ss_pred ccCCCcceeehhhhhhcccCCCCCccccCCCCCHH---HHHHHHhCC---Ccceee-eccccccccccccc----hhhHH
Q 011044 386 VSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLR---RWVNDLLSI---SVMEVV-DANLLSWKDKHFMT----KEQCM 454 (495)
Q Consensus 386 ~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~---~wv~~~~~~---~~~~v~-d~~l~~~~~~~~~~----~~~~~ 454 (495)
.+.++||||+|+++.|+++|+.|... ..... +.++..... ...++. -+............ .....
T Consensus 190 ~~~~~DiwslG~il~ell~g~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (346)
T 1ua2_A 190 YGVGVDMWAVGCILAELLLRVPFLPG----DSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPLHHIFSAAG 265 (346)
T ss_dssp CCHHHHHHHHHHHHHHHHHSSCSSCC----SSHHHHHHHHHHHHCCCCTTTSSSTTSSTTCCCCCCCCCCCHHHHCTTCC
T ss_pred CCchhhhHhHHHHHHHHHHCCCCCCC----CCHHHHHHHHHHHcCCCChhhhhhhccCcccccccccCCCChHHhhccCC
Confidence 46679999999999999999887432 22211 111111100 000000 00000000000000 01122
Q ss_pred HHHHHHHhhcCCCCccCchhHHHHHH
Q 011044 455 SFVFNLAMECTVESPIRESTQRKLLQ 480 (495)
Q Consensus 455 ~~~~~~~~~C~~~~p~~Rp~m~~v~~ 480 (495)
..+.++...|...+|.+||++.|+++
T Consensus 266 ~~~~~li~~~L~~dP~~Rpt~~ell~ 291 (346)
T 1ua2_A 266 DDLLDLIQGLFLFNPCARITATQALK 291 (346)
T ss_dssp HHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred HHHHHHHHHHhccChhhCCCHHHHhc
Confidence 45778999999999999999999964
No 387
>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*
Probab=95.87 E-value=0.00089 Score=66.41 Aligned_cols=25 Identities=20% Similarity=0.038 Sum_probs=22.0
Q ss_pred HHHHHHhhcCCCCccCchhHHHHHH
Q 011044 456 FVFNLAMECTVESPIRESTQRKLLQ 480 (495)
Q Consensus 456 ~~~~~~~~C~~~~p~~Rp~m~~v~~ 480 (495)
.+.++...|...+|.+||++.|+++
T Consensus 337 ~~~dLl~~mL~~dP~~R~ta~e~L~ 361 (432)
T 3n9x_A 337 DGINLLESMLKFNPNKRITIDQALD 361 (432)
T ss_dssp HHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred HHHHHHHHHhcCCcccCCCHHHHhc
Confidence 3678889999999999999999864
No 388
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.86 E-value=0.012 Score=47.40 Aligned_cols=35 Identities=26% Similarity=0.310 Sum_probs=16.6
Q ss_pred CCEEEcccCcCccccCccccCCCCCCEEEccCCCC
Q 011044 154 LRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKL 188 (495)
Q Consensus 154 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 188 (495)
|++|+|++|.++..-+..|..+++|++|+|++|.+
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 44444444444433333344455555555555544
No 389
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=95.81 E-value=0.0024 Score=63.58 Aligned_cols=77 Identities=10% Similarity=0.152 Sum_probs=50.3
Q ss_pred CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044 383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM 462 (495)
Q Consensus 383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~ 462 (495)
....+.++||||||+++.||+||+.|... .+.............. +-. .....+.++..
T Consensus 323 ~~~~~~~~DiwslG~il~ell~g~~Pf~~-----~~~~~~~~~i~~~~~~------~p~----------~~~~~~~~li~ 381 (446)
T 4ejn_A 323 DNDYGRAVDWWGLGVVMYEMMCGRLPFYN-----QDHEKLFELILMEEIR------FPR----------TLGPEAKSLLS 381 (446)
T ss_dssp TSCCCTHHHHHHHHHHHHHHHHSSCSSCC-----SSHHHHHHHHHHCCCC------CCT----------TSCHHHHHHHH
T ss_pred CCCCCCccchhhhHHHHHHHhhCCCCCCC-----CCHHHHHHHHHhCCCC------CCc----------cCCHHHHHHHH
Confidence 34567789999999999999999999642 2222333322221110 000 01123667889
Q ss_pred hcCCCCccCch-----hHHHHHH
Q 011044 463 ECTVESPIRES-----TQRKLLQ 480 (495)
Q Consensus 463 ~C~~~~p~~Rp-----~m~~v~~ 480 (495)
.|...+|.+|| ++.|+++
T Consensus 382 ~~L~~dP~~R~~~~~~t~~ell~ 404 (446)
T 4ejn_A 382 GLLKKDPKQRLGGGSEDAKEIMQ 404 (446)
T ss_dssp HHTCSSTTTSTTCSTTTHHHHHT
T ss_pred HHcccCHHHhCCCCCCCHHHHHh
Confidence 99999999999 8888853
No 390
>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...
Probab=95.78 E-value=0.0015 Score=63.16 Aligned_cols=94 Identities=12% Similarity=0.085 Sum_probs=49.7
Q ss_pred cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCc----ceeeeccc---cc---cccc--cccchhh
Q 011044 385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISV----MEVVDANL---LS---WKDK--HFMTKEQ 452 (495)
Q Consensus 385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~----~~v~d~~l---~~---~~~~--~~~~~~~ 452 (495)
..+.++||||+|+++.||+||+.|....- .......+.+...... ..+..... .. .... .......
T Consensus 206 ~~~~~~DiwslG~il~ell~g~~pf~~~~--~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (367)
T 2fst_X 206 HYNQTVDIWSVGCIMAELLTGRTLFPGTD--HIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIG 283 (367)
T ss_dssp SCCTTHHHHHHHHHHHHHHHSSCSCCCSS--HHHHHHHHHHHHCSCCHHHHTTCCCHHHHHHHHTSCCCCCCCHHHHTTT
T ss_pred CCCchhhHHHHHHHHHHHHhCCCCCCCCC--HHHHHHHHHHHhCCCCHHHHHHhhhHHHHHHHhccCCCCCCCHHHHCCC
Confidence 45678999999999999999999853210 1111111111111110 00100000 00 0000 0000001
Q ss_pred HHHHHHHHHhhcCCCCccCchhHHHHHH
Q 011044 453 CMSFVFNLAMECTVESPIRESTQRKLLQ 480 (495)
Q Consensus 453 ~~~~~~~~~~~C~~~~p~~Rp~m~~v~~ 480 (495)
.-..+.++...|...+|.+||++.|+++
T Consensus 284 ~~~~~~dLl~~mL~~dP~~R~t~~e~L~ 311 (367)
T 2fst_X 284 ANPLAVDLLEKMLVLDSDKRITAAQALA 311 (367)
T ss_dssp CCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred CCHHHHHHHHHhCCCCcccCcCHHHHhc
Confidence 1233678889999999999999999864
No 391
>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}
Probab=95.75 E-value=0.0045 Score=60.15 Aligned_cols=76 Identities=12% Similarity=0.126 Sum_probs=47.5
Q ss_pred cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhc
Q 011044 385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMEC 464 (495)
Q Consensus 385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C 464 (495)
..+.++|+||+||++.||+||+.|.... ........+........ . -+ ......+..+...|
T Consensus 193 ~~~~~~DiwSlG~il~elltG~~Pf~~~--~~~~~~~~~~~~~~~~~-~--~p-------------~~~s~~~~~li~~l 254 (384)
T 4fr4_A 193 GYSFAVDWWSLGVTAYELLRGRRPYHIR--SSTSSKEIVHTFETTVV-T--YP-------------SAWSQEMVSLLKKL 254 (384)
T ss_dssp CBCTTHHHHHHHHHHHHHHHSSCSSCCC--TTSCHHHHHHHHHHCCC-C--CC-------------TTSCHHHHHHHHHH
T ss_pred CCCccceeechHHHHHHHHhCCCCCCCC--CCccHHHHHHHHhhccc-C--CC-------------CcCCHHHHHHHHHH
Confidence 3567899999999999999999996432 12233333222111110 0 00 01112367788899
Q ss_pred CCCCccCchh-HHHH
Q 011044 465 TVESPIREST-QRKL 478 (495)
Q Consensus 465 ~~~~p~~Rp~-m~~v 478 (495)
...+|.+||+ +.++
T Consensus 255 L~~dP~~R~s~~~~l 269 (384)
T 4fr4_A 255 LEPNPDQRFSQLSDV 269 (384)
T ss_dssp SCSSGGGSCCSHHHH
T ss_pred hcCCHhHhcccHHHH
Confidence 9999999998 5554
No 392
>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*
Probab=95.72 E-value=0.0039 Score=59.17 Aligned_cols=75 Identities=11% Similarity=0.146 Sum_probs=47.5
Q ss_pred ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044 384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME 463 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~ 463 (495)
...+.++||||+|+++.|+++|+.|... .+....++....... .+-. .....+.++...
T Consensus 196 ~~~~~~~DiwslG~il~el~~g~~pf~~-----~~~~~~~~~i~~~~~------~~p~----------~~~~~~~~li~~ 254 (327)
T 3a62_A 196 SGHNRAVDWWSLGALMYDMLTGAPPFTG-----ENRKKTIDKILKCKL------NLPP----------YLTQEARDLLKK 254 (327)
T ss_dssp SCCCTHHHHHHHHHHHHHHHHSSCSCCC-----SSHHHHHHHHHHTCC------CCCT----------TSCHHHHHHHHH
T ss_pred CCCCCcccchhHHHHHHHHHHCCCCCCC-----CCHHHHHHHHHhCCC------CCCC----------CCCHHHHHHHHH
Confidence 3456789999999999999999999542 222233333222111 0000 011236678899
Q ss_pred cCCCCccCch-----hHHHHH
Q 011044 464 CTVESPIRES-----TQRKLL 479 (495)
Q Consensus 464 C~~~~p~~Rp-----~m~~v~ 479 (495)
|...+|.+|| +..|++
T Consensus 255 ~L~~dp~~R~~~~~~~~~e~l 275 (327)
T 3a62_A 255 LLKRNAASRLGAGPGDAGEVQ 275 (327)
T ss_dssp HSCSCGGGSTTSSTTTHHHHH
T ss_pred HHhcCHhhccCCCCCCHHHHH
Confidence 9999999999 555653
No 393
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=95.64 E-value=0.0044 Score=63.68 Aligned_cols=80 Identities=15% Similarity=0.150 Sum_probs=48.5
Q ss_pred ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044 384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME 463 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~ 463 (495)
...+.++|+||+||++.||++|+.|.. +. +-....+....... .. +...... . -.....+...
T Consensus 331 ~~y~~~~DiWSlGvilyeml~G~~Pf~----~~-~~~~~~~~i~~~~~-~~-~~~~~~~-------~---s~~~~dli~~ 393 (573)
T 3uto_A 331 KPVGYYTDMWSVGVLSYILLSGLSPFG----GE-NDDETLRNVKSCDW-NM-DDSAFSG-------I---SEDGKDFIRK 393 (573)
T ss_dssp CCBCHHHHHHHHHHHHHHHHHSCCSSC----CS-SHHHHHHHHHTTCC-CC-CSGGGTT-------S---CHHHHHHHHT
T ss_pred CCCCcHHHHHHHHHHHHHHHHCCCCCC----Cc-CHHHHHHHHHhCCC-CC-CcccccC-------C---CHHHHHHHHH
Confidence 345667899999999999999999953 22 22222222222110 00 0000000 0 1124567789
Q ss_pred cCCCCccCchhHHHHHH
Q 011044 464 CTVESPIRESTQRKLLQ 480 (495)
Q Consensus 464 C~~~~p~~Rp~m~~v~~ 480 (495)
|...+|.+||++.|+++
T Consensus 394 ~L~~dp~~R~t~~e~l~ 410 (573)
T 3uto_A 394 LLLADPNTRMTIHQALE 410 (573)
T ss_dssp TSCSSGGGSCCHHHHHH
T ss_pred HccCChhHCcCHHHHhc
Confidence 99999999999999864
No 394
>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}
Probab=95.63 E-value=0.0022 Score=62.57 Aligned_cols=25 Identities=12% Similarity=0.238 Sum_probs=22.0
Q ss_pred ccCCCcceeehhhhhhcccCCCCCc
Q 011044 386 VSTNGDIYNFGIMIMETFTAKKPTD 410 (495)
Q Consensus 386 ~~~~~dvysfgilllE~~tgk~p~~ 410 (495)
.+.++|+||+||++.||+||+.|..
T Consensus 240 ~~~~~DiWSlG~il~ell~G~~pF~ 264 (398)
T 4b99_A 240 YTQAIDLWSVGCIFGEMLARRQLFP 264 (398)
T ss_dssp CCTHHHHHHHHHHHHHHHHTSCSSC
T ss_pred CCChhheehhHHHHHHHHHCCCCCC
Confidence 4567899999999999999999953
No 395
>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}
Probab=95.60 E-value=0.0049 Score=59.43 Aligned_cols=80 Identities=8% Similarity=-0.081 Sum_probs=47.1
Q ss_pred CCccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044 382 REGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA 461 (495)
Q Consensus 382 ~~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~ 461 (495)
.....+.++|||||||++.||+||+.|......+. ...+..+.. . ...+.+. ++.
T Consensus 258 ~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~----------------~~~~~~~~~-~-----~~~~~~~---~~~ 312 (365)
T 3e7e_A 258 SNKPWNYQIDYFGVAATVYCMLFGTYMKVKNEGGE----------------CKPEGLFRR-L-----PHLDMWN---EFF 312 (365)
T ss_dssp TTCCBSTHHHHHHHHHHHHHHHHSSCCCEEEETTE----------------EEECSCCTT-C-----SSHHHHH---HHH
T ss_pred cCCCCCccccHHHHHHHHHHHHhCCCccccCCCCc----------------eeechhccc-c-----CcHHHHH---HHH
Confidence 34456789999999999999999999964322210 001111100 0 1122333 444
Q ss_pred hhcCCCCccCc-hhHHHHHHHHHHHH
Q 011044 462 MECTVESPIRE-STQRKLLQDSQKLE 486 (495)
Q Consensus 462 ~~C~~~~p~~R-p~m~~v~~~l~~i~ 486 (495)
..|...+|.+| |++.++.+.++.+-
T Consensus 313 ~~~l~~~p~~r~~~~~~l~~~l~~~l 338 (365)
T 3e7e_A 313 HVMLNIPDCHHLPSLDLLRQKLKKVF 338 (365)
T ss_dssp HHHHCCCCTTCCCCHHHHHHHHHHHH
T ss_pred HHHcCCCCCCcchHHHHHHHHHHHHH
Confidence 45556677777 67888777776653
No 396
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.58 E-value=0.027 Score=45.25 Aligned_cols=56 Identities=21% Similarity=0.241 Sum_probs=30.5
Q ss_pred EEEcccCcCc-cccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCC
Q 011044 156 ELSLSSNYFS-GTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLT 213 (495)
Q Consensus 156 ~L~l~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 213 (495)
.++.+++.++ ..+|..+. .+|++|+|++|.++...+..|..+++|+.|+|.+|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4455555443 23443321 34666666666666544455566666666666666543
No 397
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Probab=95.53 E-value=0.0042 Score=59.62 Aligned_cols=75 Identities=13% Similarity=0.045 Sum_probs=48.6
Q ss_pred ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044 384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME 463 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~ 463 (495)
...+.++|+||+|+++.||++|+.|... .+.....+....... .+-. .....+..+...
T Consensus 213 ~~~~~~~DiwslG~il~ell~g~~Pf~~-----~~~~~~~~~i~~~~~------~~p~----------~~~~~~~~li~~ 271 (350)
T 1rdq_E 213 KGYNKAVDWWALGVLIYEMAAGYPPFFA-----DQPIQIYEKIVSGKV------RFPS----------HFSSDLKDLLRN 271 (350)
T ss_dssp CCBCTHHHHHHHHHHHHHHHHSSCSSCC-----SSHHHHHHHHHHCCC------CCCT----------TCCHHHHHHHHH
T ss_pred CCCCCcCCEecccHhHhHHhhCCCCCCC-----CCHHHHHHHHHcCCC------CCCC----------CCCHHHHHHHHH
Confidence 3456789999999999999999999542 122233333222211 0000 111236678899
Q ss_pred cCCCCccCchh-----HHHHH
Q 011044 464 CTVESPIREST-----QRKLL 479 (495)
Q Consensus 464 C~~~~p~~Rp~-----m~~v~ 479 (495)
|...+|.+||+ +.|+.
T Consensus 272 lL~~dp~~R~~~~~~~~~ei~ 292 (350)
T 1rdq_E 272 LLQVDLTKRFGNLKNGVNDIK 292 (350)
T ss_dssp HSCSCTTTCTTSSTTTTHHHH
T ss_pred HhhcCHHhccCCccCCHHHHH
Confidence 99999999998 77764
No 398
>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}
Probab=95.53 E-value=0.0025 Score=63.64 Aligned_cols=26 Identities=19% Similarity=0.122 Sum_probs=22.6
Q ss_pred HHHHHHHhhcCCCCccCchhHHHHHH
Q 011044 455 SFVFNLAMECTVESPIRESTQRKLLQ 480 (495)
Q Consensus 455 ~~~~~~~~~C~~~~p~~Rp~m~~v~~ 480 (495)
..+..+...|...+|.+||++.|+++
T Consensus 371 ~~~~dLl~~mL~~dP~~R~t~~e~L~ 396 (458)
T 3rp9_A 371 ADAIHLLKRMLVFNPNKRITINECLA 396 (458)
T ss_dssp HHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred HHHHHHHHHHhccCccccCCHHHHhc
Confidence 34678899999999999999999864
No 399
>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*
Probab=95.51 E-value=0.0038 Score=60.44 Aligned_cols=77 Identities=9% Similarity=0.091 Sum_probs=48.7
Q ss_pred cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhc
Q 011044 385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMEC 464 (495)
Q Consensus 385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C 464 (495)
..+.++|+||+||++.||++|+.|... .+.....+........ ..+. ....+..+...|
T Consensus 215 ~~~~~~DiwslG~il~ell~G~~Pf~~-----~~~~~~~~~i~~~~~~--~~~~--------------~~~~~~~li~~l 273 (373)
T 2r5t_A 215 PYDRTVDWWCLGAVLYEMLYGLPPFYS-----RNTAEMYDNILNKPLQ--LKPN--------------ITNSARHLLEGL 273 (373)
T ss_dssp CCCTHHHHHHHHHHHHHHHHSSCTTCC-----SBHHHHHHHHHHSCCC--CCSS--------------SCHHHHHHHHHH
T ss_pred CCCchhhhHHHHHHHHHHHcCCCCCCC-----CCHHHHHHHHHhcccC--CCCC--------------CCHHHHHHHHHH
Confidence 456789999999999999999999542 2222333322221110 0011 112356788899
Q ss_pred CCCCccCchhHHHHHHHH
Q 011044 465 TVESPIRESTQRKLLQDS 482 (495)
Q Consensus 465 ~~~~p~~Rp~m~~v~~~l 482 (495)
...+|.+||++.+.+.++
T Consensus 274 L~~dp~~R~~~~~~~~~i 291 (373)
T 2r5t_A 274 LQKDRTKRLGAKDDFMEI 291 (373)
T ss_dssp TCSSGGGSTTTTTTHHHH
T ss_pred cccCHHhCCCCCCCHHHH
Confidence 999999999987544433
No 400
>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7
Probab=95.23 E-value=0.0076 Score=56.91 Aligned_cols=75 Identities=13% Similarity=0.138 Sum_probs=48.1
Q ss_pred ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044 384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME 463 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~ 463 (495)
...+.++|+||+|+++.||++|+.|... . +.....+....... .+-. .....+.++...
T Consensus 178 ~~~~~~~DiwslG~il~ell~g~~pf~~----~-~~~~~~~~i~~~~~------~~p~----------~~~~~~~~li~~ 236 (318)
T 1fot_A 178 KPYNKSIDWWSFGILIYEMLAGYTPFYD----S-NTMKTYEKILNAEL------RFPP----------FFNEDVKDLLSR 236 (318)
T ss_dssp CCBCTTHHHHHHHHHHHHHHHSSCTTCC----S-SHHHHHHHHHHCCC------CCCT----------TSCHHHHHHHHH
T ss_pred CCCCcccchhhhHHHHHHHHhCCCCCCC----C-CHHHHHHHHHhCCC------CCCC----------CCCHHHHHHHHH
Confidence 4456789999999999999999999532 1 22233332222111 0000 001236677889
Q ss_pred cCCCCccCch-----hHHHHH
Q 011044 464 CTVESPIRES-----TQRKLL 479 (495)
Q Consensus 464 C~~~~p~~Rp-----~m~~v~ 479 (495)
|...+|.+|| ++.|+.
T Consensus 237 lL~~dp~~R~~~~~~~~~~i~ 257 (318)
T 1fot_A 237 LITRDLSQRLGNLQNGTEDVK 257 (318)
T ss_dssp HTCSCTTTCTTSSTTTTHHHH
T ss_pred HhccCHHHcCCCcCCCHHHHh
Confidence 9999999999 777774
No 401
>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*
Probab=95.12 E-value=0.0084 Score=57.53 Aligned_cols=72 Identities=10% Similarity=0.146 Sum_probs=46.0
Q ss_pred CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044 383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM 462 (495)
Q Consensus 383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~ 462 (495)
....+.++|+||+||++.||++|+.|... .+.....+........ +-. .....+..+..
T Consensus 195 ~~~~~~~~DiwslG~il~ell~G~~Pf~~-----~~~~~~~~~i~~~~~~------~p~----------~~s~~~~~li~ 253 (353)
T 2i0e_A 195 YQPYGKSVDWWAFGVLLYEMLAGQAPFEG-----EDEDELFQSIMEHNVA------YPK----------SMSKEAVAICK 253 (353)
T ss_dssp TCCBSTHHHHHHHHHHHHHHHHSSCSSCC-----SSHHHHHHHHHHCCCC------CCT----------TSCHHHHHHHH
T ss_pred CCCcCCcccccchHHHHHHHHcCCCCCCC-----CCHHHHHHHHHhCCCC------CCC----------CCCHHHHHHHH
Confidence 34456789999999999999999999542 2223333332221110 000 01123667888
Q ss_pred hcCCCCccCchhH
Q 011044 463 ECTVESPIRESTQ 475 (495)
Q Consensus 463 ~C~~~~p~~Rp~m 475 (495)
.|...+|.+||+.
T Consensus 254 ~lL~~dP~~R~~~ 266 (353)
T 2i0e_A 254 GLMTKHPGKRLGC 266 (353)
T ss_dssp HHTCSCTTSCTTC
T ss_pred HHhhcCHHHcCCC
Confidence 9999999999964
No 402
>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}
Probab=94.99 E-value=0.0071 Score=58.04 Aligned_cols=69 Identities=10% Similarity=0.133 Sum_probs=44.6
Q ss_pred ccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhcC
Q 011044 386 VSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECT 465 (495)
Q Consensus 386 ~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C~ 465 (495)
.+.++|+||+||++.||+||+.|... .+-....+........ -+. .....+..+...|.
T Consensus 201 ~~~~~DiwslG~il~ell~G~~Pf~~-----~~~~~~~~~i~~~~~~---~p~-------------~~~~~~~~li~~lL 259 (353)
T 3txo_A 201 YGPAVDWWAMGVLLYEMLCGHAPFEA-----ENEDDLFEAILNDEVV---YPT-------------WLHEDATGILKSFM 259 (353)
T ss_dssp CTTHHHHHHHHHHHHHHHHSSCSSCC-----SSHHHHHHHHHHCCCC---CCT-------------TSCHHHHHHHHHHT
T ss_pred cCCccCCCcchHHHHHHHhCCCCCCC-----CCHHHHHHHHHcCCCC---CCC-------------CCCHHHHHHHHHHh
Confidence 45689999999999999999999542 2222333332221110 000 01122567788999
Q ss_pred CCCccCchhH
Q 011044 466 VESPIRESTQ 475 (495)
Q Consensus 466 ~~~p~~Rp~m 475 (495)
..+|.+||+.
T Consensus 260 ~~dP~~R~~~ 269 (353)
T 3txo_A 260 TKNPTMRLGS 269 (353)
T ss_dssp CSSGGGSTTS
T ss_pred hhCHHHccCC
Confidence 9999999998
No 403
>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*
Probab=94.92 E-value=0.0036 Score=59.90 Aligned_cols=75 Identities=13% Similarity=0.232 Sum_probs=47.8
Q ss_pred CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044 383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM 462 (495)
Q Consensus 383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~ 462 (495)
....+.++|+||+||++.||++|+.|... .+.....+...... +.+-.. .-..+..+..
T Consensus 192 ~~~~~~~~DiwslG~il~ell~g~~Pf~~-----~~~~~~~~~i~~~~------~~~p~~----------~s~~~~~li~ 250 (345)
T 1xjd_A 192 GQKYNHSVDWWSFGVLLYEMLIGQSPFHG-----QDEEELFHSIRMDN------PFYPRW----------LEKEAKDLLV 250 (345)
T ss_dssp TCCBCTHHHHHHHHHHHHHHHHSSCSSCC-----SSHHHHHHHHHHCC------CCCCTT----------SCHHHHHHHH
T ss_pred CCCCCChhhhHHHHHHHHHHhcCCCCCCC-----CCHHHHHHHHHhCC------CCCCcc----------cCHHHHHHHH
Confidence 34467789999999999999999999542 22223222222111 001000 1123567788
Q ss_pred hcCCCCccCchhHH-HH
Q 011044 463 ECTVESPIRESTQR-KL 478 (495)
Q Consensus 463 ~C~~~~p~~Rp~m~-~v 478 (495)
.|...+|.+||++. ++
T Consensus 251 ~lL~~dp~~R~~~~~~i 267 (345)
T 1xjd_A 251 KLFVREPEKRLGVRGDI 267 (345)
T ss_dssp HHSCSSGGGSBTTBSCG
T ss_pred HHhcCCHhHcCCChHHH
Confidence 99999999999987 55
No 404
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}
Probab=94.91 E-value=0.0068 Score=59.15 Aligned_cols=78 Identities=8% Similarity=0.125 Sum_probs=45.6
Q ss_pred CccccCCCcceeehhhhhhcccCCCCCccccCCC---CCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHH
Q 011044 383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGE---MTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFN 459 (495)
Q Consensus 383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~---~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~ 459 (495)
....+.++|+||+||++.||++|+.|.+..-..+ .....++...+...... +-. ..-..+..
T Consensus 227 ~~~~~~~~DiwslGvllyell~G~~Pf~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~p~----------~~s~~~~~ 291 (396)
T 4dc2_A 227 GEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQIR-----IPR----------SLSVKAAS 291 (396)
T ss_dssp TCCBCTHHHHHHHHHHHHHHHHSSCSSTTTTC------CCHHHHHHHHHHCCCC-----CCT----------TSCHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHhCCCCCcccccccccchhhHHHHHHHHhccccC-----CCC----------cCCHHHHH
Confidence 3445678999999999999999999975321110 11112222221111000 000 01123567
Q ss_pred HHhhcCCCCccCchhH
Q 011044 460 LAMECTVESPIRESTQ 475 (495)
Q Consensus 460 ~~~~C~~~~p~~Rp~m 475 (495)
+...|...+|.+||+.
T Consensus 292 li~~lL~~dP~~R~~~ 307 (396)
T 4dc2_A 292 VLKSFLNKDPKERLGC 307 (396)
T ss_dssp HHHHHTCSCTTTSTTC
T ss_pred HHHHHhcCCHhHcCCC
Confidence 8889999999999985
No 405
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Probab=94.82 E-value=0.0084 Score=61.00 Aligned_cols=77 Identities=12% Similarity=0.124 Sum_probs=48.1
Q ss_pred CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044 383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM 462 (495)
Q Consensus 383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~ 462 (495)
....+.++|+||+||++.||+||+.|....- .......+.+........ . .. .....+..+..
T Consensus 363 ~~~~~~~~DiwSlGvilyelltG~~PF~~~~-~~~~~~~~~~~i~~~~~~-~-p~--------------~~s~~~~~li~ 425 (543)
T 3c4z_A 363 GEEYDFSVDYFALGVTLYEMIAARGPFRARG-EKVENKELKQRVLEQAVT-Y-PD--------------KFSPASKDFCE 425 (543)
T ss_dssp TCCBCTHHHHHHHHHHHHHHHHSSCSSCCTT-CCCCHHHHHHHHHHCCCC-C-CT--------------TSCHHHHHHHH
T ss_pred CCCCChHHhcCcchHHHHHHHhCCCCCCCCc-cchhHHHHHHHHhhcccC-C-Cc--------------ccCHHHHHHHH
Confidence 3456778999999999999999999965321 122333333332221110 0 00 11123567788
Q ss_pred hcCCCCccCchhHH
Q 011044 463 ECTVESPIRESTQR 476 (495)
Q Consensus 463 ~C~~~~p~~Rp~m~ 476 (495)
.|...+|.+||++.
T Consensus 426 ~lL~~dP~~R~~~~ 439 (543)
T 3c4z_A 426 ALLQKDPEKRLGFR 439 (543)
T ss_dssp HHSCSSGGGSCCCB
T ss_pred HhccCCHhHCCCCc
Confidence 99999999999864
No 406
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*
Probab=94.71 E-value=0.0061 Score=59.81 Aligned_cols=77 Identities=10% Similarity=0.148 Sum_probs=45.3
Q ss_pred ccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCc-ceeeeccccccccccccchhhHHHHHHHHHhhc
Q 011044 386 VSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISV-MEVVDANLLSWKDKHFMTKEQCMSFVFNLAMEC 464 (495)
Q Consensus 386 ~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~-~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C 464 (495)
.+.++|+||+||++.||+||+.|... .+.....+....... ... +. .. .. -..+..+...|
T Consensus 250 ~~~~~DiwSlGvilyell~G~~Pf~~-----~~~~~~~~~i~~~~~~~~~--p~---~~-----~~---s~~~~~li~~l 311 (410)
T 3v8s_A 250 YGRECDWWSVGVFLYEMLVGDTPFYA-----DSLVGTYSKIMNHKNSLTF--PD---DN-----DI---SKEAKNLICAF 311 (410)
T ss_dssp EETHHHHHHHHHHHHHHHHSSCTTCC-----SSHHHHHHHHHTHHHHCCC--CT---TC-----CC---CHHHHHHHHHH
T ss_pred CCCcceEecchHHHHHHHhCCCCCCC-----CChhhHHHHHHhccccccC--CC---cc-----cc---cHHHHHHHHHH
Confidence 56789999999999999999999542 122233322222110 000 00 00 00 11244556677
Q ss_pred CCCCccC--chhHHHHHH
Q 011044 465 TVESPIR--ESTQRKLLQ 480 (495)
Q Consensus 465 ~~~~p~~--Rp~m~~v~~ 480 (495)
....|.+ ||++.|+.+
T Consensus 312 L~~~~~rlgR~~~~ei~~ 329 (410)
T 3v8s_A 312 LTDREVRLGRNGVEEIKR 329 (410)
T ss_dssp SSCGGGCTTSSCHHHHHT
T ss_pred ccChhhhCCCCCHHHHhc
Confidence 7778887 999999853
No 407
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=94.69 E-value=0.012 Score=61.84 Aligned_cols=73 Identities=10% Similarity=0.033 Sum_probs=47.7
Q ss_pred cCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhcCC
Q 011044 387 STNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECTV 466 (495)
Q Consensus 387 ~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~ 466 (495)
+.++|||||||++.|+++|..|....+..+.. ... ........+..+...|..
T Consensus 254 ~~~sDi~slG~~l~~l~~g~~~~~~~~~~~~~----------------------~~~-----~~~~~~~~l~~li~~~l~ 306 (681)
T 2pzi_A 254 TVATDIYTVGRTLAALTLDLPTRNGRYVDGLP----------------------EDD-----PVLKTYDSYGRLLRRAID 306 (681)
T ss_dssp CHHHHHHHHHHHHHHHHSCCCEETTEECSSCC----------------------TTC-----HHHHHCHHHHHHHHHHTC
T ss_pred CCceehhhhHHHHHHHHhCCCCCccccccccc----------------------ccc-----cccccCHHHHHHHhhhcc
Confidence 66899999999999999997774432221110 000 000112346778999999
Q ss_pred CCccCchh-HHHHHHHHHHHH
Q 011044 467 ESPIREST-QRKLLQDSQKLE 486 (495)
Q Consensus 467 ~~p~~Rp~-m~~v~~~l~~i~ 486 (495)
.+|.+||+ +.++.+.+..+.
T Consensus 307 ~dP~~R~~~~~~l~~~l~~~~ 327 (681)
T 2pzi_A 307 PDPRQRFTTAEEMSAQLTGVL 327 (681)
T ss_dssp SSGGGSCSSHHHHHHHHHHHH
T ss_pred CChhhCCCHHHHHHHHHHHHH
Confidence 99999995 555666666543
No 408
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=94.64 E-value=0.011 Score=62.06 Aligned_cols=76 Identities=11% Similarity=0.129 Sum_probs=49.0
Q ss_pred hcCCCccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHH
Q 011044 379 EYGREGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVF 458 (495)
Q Consensus 379 ~~~~~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~ 458 (495)
|.......+.++|+|||||++.||+||+.|... .+-....+........ + .. ..-..+.
T Consensus 512 E~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~-----~~~~~~~~~i~~~~~~-~-p~--------------~~s~~~~ 570 (674)
T 3pfq_A 512 EIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEG-----EDEDELFQSIMEHNVA-Y-PK--------------SMSKEAV 570 (674)
T ss_dssp HHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCC-----SSHHHHHHHHHSSCCC-C-CT--------------TSCHHHH
T ss_pred hhhcCCCCCccceEechHHHHHHHHcCCCCCCC-----CCHHHHHHHHHhCCCC-C-Cc--------------cCCHHHH
Confidence 333344567789999999999999999999542 2333333333332210 0 00 0112366
Q ss_pred HHHhhcCCCCccCchhH
Q 011044 459 NLAMECTVESPIRESTQ 475 (495)
Q Consensus 459 ~~~~~C~~~~p~~Rp~m 475 (495)
.+...|...+|.+||++
T Consensus 571 ~li~~lL~~dP~~R~~~ 587 (674)
T 3pfq_A 571 AICKGLMTKHPGKRLGC 587 (674)
T ss_dssp HHHHHHSCSSSTTCTTC
T ss_pred HHHHHHccCCHHHCCCC
Confidence 78889999999999998
No 409
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Probab=94.57 E-value=0.012 Score=60.29 Aligned_cols=80 Identities=11% Similarity=0.174 Sum_probs=48.8
Q ss_pred CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044 383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM 462 (495)
Q Consensus 383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~ 462 (495)
....+.++|+||+||++.||+||+.|....-. ........+....... .+ .. ..-..+..+..
T Consensus 359 ~~~~~~~~DiwSLGvilyeLltG~~PF~~~~~-~~~~~~i~~~i~~~~~-~~-p~--------------~~s~~~~dLI~ 421 (576)
T 2acx_A 359 NERYTFSPDWWALGCLLYEMIAGQSPFQQRKK-KIKREEVERLVKEVPE-EY-SE--------------RFSPQARSLCS 421 (576)
T ss_dssp TCEESSHHHHHHHHHHHHHHHHSSCSSSCSSS-CCCHHHHHHHHHHCCC-CC-CT--------------TSCHHHHHHHH
T ss_pred CCCCCccchHHHHHHHHHHHHhCCCCCccccc-chhHHHHHHHhhcccc-cC-Cc--------------cCCHHHHHHHH
Confidence 44567789999999999999999999654211 1122222221111110 00 00 01123667788
Q ss_pred hcCCCCccCch-----hHHHHH
Q 011044 463 ECTVESPIRES-----TQRKLL 479 (495)
Q Consensus 463 ~C~~~~p~~Rp-----~m~~v~ 479 (495)
.|...+|.+|| ++.||.
T Consensus 422 ~lL~~dP~~R~g~~~~sa~eil 443 (576)
T 2acx_A 422 QLLCKDPAERLGCRGGSAREVK 443 (576)
T ss_dssp HHTCSSGGGSTTCSSSHHHHHH
T ss_pred HhccCCHHHcCCCCCCCHHHHH
Confidence 99999999999 677774
No 410
>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*
Probab=94.56 E-value=0.011 Score=56.46 Aligned_cols=77 Identities=8% Similarity=0.132 Sum_probs=44.9
Q ss_pred ccccCCCcceeehhhhhhcccCCCCCccccCCC---CCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHH
Q 011044 384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGE---MTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNL 460 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~---~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~ 460 (495)
...+.++|+||+||++.||++|+.|.+...... .....++...+..... .+- ......+..+
T Consensus 185 ~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~i~~~~~-----~~p----------~~~s~~~~~l 249 (345)
T 3a8x_A 185 EDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQI-----RIP----------RSLSVKAASV 249 (345)
T ss_dssp CCBCTHHHHHHHHHHHHHHHHSSCTTTTTTC-------CHHHHHHHHHHCCC-----CCC----------TTSCHHHHHH
T ss_pred CCCChHHhHHHHHHHHHHHHhCCCCcCCcccccccccccHHHHHHHHHcCCC-----CCC----------CCCCHHHHHH
Confidence 445678999999999999999999975321110 0111122211111100 000 0111236678
Q ss_pred HhhcCCCCccCchhH
Q 011044 461 AMECTVESPIRESTQ 475 (495)
Q Consensus 461 ~~~C~~~~p~~Rp~m 475 (495)
...|...+|.+||+.
T Consensus 250 i~~lL~~dP~~R~~~ 264 (345)
T 3a8x_A 250 LKSFLNKDPKERLGC 264 (345)
T ss_dssp HHHHTCSSTTTSTTC
T ss_pred HHHHhcCCHhHCCCC
Confidence 889999999999985
No 411
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Probab=94.24 E-value=0.014 Score=57.65 Aligned_cols=27 Identities=22% Similarity=0.471 Sum_probs=23.8
Q ss_pred ccccCCCcceeehhhhhhcccCCCCCc
Q 011044 384 GRVSTNGDIYNFGIMIMETFTAKKPTD 410 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~tgk~p~~ 410 (495)
+..+.++|||||||++.||+||+.|..
T Consensus 256 ~~~~~~~DvwSlGvil~elltG~~Pf~ 282 (437)
T 4aw2_A 256 GRYGPECDWWSLGVCMYEMLYGETPFY 282 (437)
T ss_dssp CEECTHHHHHHHHHHHHHHHHSSCTTC
T ss_pred CCCCCcCeeHHHHHHHHHHHhCCCCCC
Confidence 456778999999999999999999964
No 412
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}
Probab=93.53 E-value=0.022 Score=55.87 Aligned_cols=27 Identities=22% Similarity=0.452 Sum_probs=23.8
Q ss_pred ccccCCCcceeehhhhhhcccCCCCCc
Q 011044 384 GRVSTNGDIYNFGIMIMETFTAKKPTD 410 (495)
Q Consensus 384 ~~~~~~~dvysfgilllE~~tgk~p~~ 410 (495)
+..+.++|+|||||++.||+||+.|..
T Consensus 245 ~~~~~~~DiwSlGvilyelltG~~Pf~ 271 (412)
T 2vd5_A 245 GSYGPECDWWALGVFAYEMFYGQTPFY 271 (412)
T ss_dssp SEECTHHHHHHHHHHHHHHHHSSCTTC
T ss_pred CCCChHHhhhHHhHHHHHHHhCCCCCC
Confidence 456778999999999999999999954
No 413
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=92.55 E-value=0.039 Score=57.15 Aligned_cols=72 Identities=13% Similarity=0.126 Sum_probs=43.8
Q ss_pred ccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhcC
Q 011044 386 VSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECT 465 (495)
Q Consensus 386 ~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C~ 465 (495)
.+.++|+||+||++.||+||+.|....-. .+.....+....... .+ ...+ -.....+...|.
T Consensus 368 y~~~vDiWSLGvilYEmLtG~~PF~~~~~--~~~~~i~~~i~~~~~-~~-p~~~--------------S~~a~dLI~~lL 429 (689)
T 3v5w_A 368 YDSSADWFSLGCMLFKLLRGHSPFRQHKT--KDKHEIDRMTLTMAV-EL-PDSF--------------SPELRSLLEGLL 429 (689)
T ss_dssp CCTHHHHHHHHHHHHHHHHSSCTTCGGGC--CCHHHHHHHHHHCCC-CC-CTTS--------------CHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHHHhCCCCCCCCCh--HHHHHHHHhhcCCCC-CC-CccC--------------CHHHHHHHHHHc
Confidence 45678999999999999999999643211 222222222221111 00 0000 112557788999
Q ss_pred CCCccCchhH
Q 011044 466 VESPIRESTQ 475 (495)
Q Consensus 466 ~~~p~~Rp~m 475 (495)
..+|.+|++.
T Consensus 430 ~~dP~~Rl~~ 439 (689)
T 3v5w_A 430 QRDVNRRLGC 439 (689)
T ss_dssp CSCGGGCTTC
T ss_pred cCCHhHCCCC
Confidence 9999999983
No 414
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=52.84 E-value=18 Score=26.87 Aligned_cols=46 Identities=11% Similarity=0.060 Sum_probs=25.0
Q ss_pred CCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccC
Q 011044 66 NLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNN 112 (495)
Q Consensus 66 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 112 (495)
.++..-...|.++..|+.+.|-.+ ++..-..+|.+|.+|+.+.+.+
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 344444455666666666666443 3333344566666666666554
No 415
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=45.27 E-value=47 Score=24.54 Aligned_cols=38 Identities=21% Similarity=0.247 Sum_probs=15.8
Q ss_pred cccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEcc
Q 011044 146 STLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLR 184 (495)
Q Consensus 146 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 184 (495)
.+|.+|.+|+.+.+..+ ++..-...|.++.+|+.+.+.
T Consensus 14 ~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred HHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 34444444444444432 222223344444444444443
Done!