BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011045
(495 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp
pdb|3VLB|C Chain C, Crystal Structure Of Xeg-Edgp
Length = 413
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 73/161 (45%), Gaps = 11/161 (6%)
Query: 341 YYVGLTGFSVGGQAVQIPPSLFEMDEAGDGGIIVDCGTAITRLQTQAYNSLRDSFVR--L 398
Y++G+ + + V + SL + AG GG + T L+T Y ++ ++F++
Sbjct: 237 YFIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESA 296
Query: 399 AGNLKPTSGVALFDTCYDFSGLRSVR----VPTVSLHFGAGKAL-DLPAKNYLIPVDSAG 453
A N+ + VA F C+ + S R VP++ L + + + N ++ ++
Sbjct: 297 ARNITRVASVAPFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYIND-N 355
Query: 454 TFCFAFAPTSSALS---IIGNVQQQGTRVSFDLANNRVGFT 491
C S L +IG Q + V FDLA +RVGF+
Sbjct: 356 VVCLGVVDGGSNLRTSIVIGGHQLEDNLVQFDLATSRVGFS 396
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp
Length = 413
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 73/161 (45%), Gaps = 11/161 (6%)
Query: 341 YYVGLTGFSVGGQAVQIPPSLFEMDEAGDGGIIVDCGTAITRLQTQAYNSLRDSFVR--L 398
Y++G+ + + V + SL + AG GG + T L+T Y ++ ++F++
Sbjct: 237 YFIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESA 296
Query: 399 AGNLKPTSGVALFDTCYDFSGLRSVR----VPTVSLHFGAGKAL-DLPAKNYLIPVDSAG 453
A N+ + VA F C+ + S R VP++ L + + + N ++ ++
Sbjct: 297 ARNITRVASVAPFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYIND-N 355
Query: 454 TFCFAFAPTSSALS---IIGNVQQQGTRVSFDLANNRVGFT 491
C S L +IG Q + V FDLA +RVGF+
Sbjct: 356 VVCLGVVDGGSNLRTSIVIGGHQLEDNLVQFDLATSRVGFS 396
>pdb|1UH7|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 4.6
pdb|1UH8|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 8.0
pdb|1UH9|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 7.0
Length = 325
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 19/99 (19%)
Query: 158 EYFSRIGVGTPPRQFSMVLDTGSDINWLQCRPCTECYQQSDPIFDPKTSSSYSPLPCAAP 217
EY+ ++ +GTP ++F++ DTGS W+ CT C + +DP SS+Y
Sbjct: 16 EYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNCGSRQTK-YDPNQSSTY-------- 66
Query: 218 QCKSLDVSACRANRCLYQVAYGDGSFTVGDLVTETVSFG 256
+A+ + ++YGDGS G L + V+ G
Sbjct: 67 ----------QADGRTWSISYGDGSSASGILAKDNVNLG 95
>pdb|3APR|E Chain E, Binding Of A Reduced Peptide Inhibitor To The Aspartic
Proteinase From Rhizopus Chinensis. Implications For A
Mechanism Of Action
pdb|4APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|5APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|6APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|2APR|A Chain A, Structure And Refinement At 1.8 Angstroms Resolution Of
The Aspartic Proteinase From Rhizopus Chinensis
Length = 325
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 19/99 (19%)
Query: 158 EYFSRIGVGTPPRQFSMVLDTGSDINWLQCRPCTECYQQSDPIFDPKTSSSYSPLPCAAP 217
EY+ ++ +GTP ++F++ DTGS W+ CT C +DP SS+Y
Sbjct: 16 EYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNC-GSGQTKYDPNQSSTY-------- 66
Query: 218 QCKSLDVSACRANRCLYQVAYGDGSFTVGDLVTETVSFG 256
+A+ + ++YGDGS G L + V+ G
Sbjct: 67 ----------QADGRTWSISYGDGSSASGILAKDNVNLG 95
>pdb|2EWY|A Chain A, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|B Chain B, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|C Chain C, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|D Chain D, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
Length = 383
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 83/185 (44%), Gaps = 25/185 (13%)
Query: 324 GDAVTAPLIRNKKVDTFYYVGLTGFSVGGQAVQIPPSLFEMDEAGDGGIIVDCGTAITRL 383
GD P+ K + +Y + + +GGQ++ + + D+A IVD GT + RL
Sbjct: 184 GDIWYTPI----KEEWYYQIEILKLEIGGQSLNLDCREYNADKA-----IVDSGTTLLRL 234
Query: 384 QTQAYNSLRDSFVRLAGNLKPTSGVALFD----TCYDFSGLRSVRVPTVSLHFGAGKA-- 437
+ ++++ ++ R +L P + C+ S P +S++ +
Sbjct: 235 PQKVFDAVVEAVAR--ASLIPEFSDGFWTGSQLACWTNSETPWSYFPKISIYLRDENSSR 292
Query: 438 ---LDLPAKNYLIPVDSAGT----FCFAFAPTSSALSIIGNVQQQGTRVSFDLANNRVGF 490
+ + + Y+ P+ AG + F +P+++AL +IG +G V FD A RVGF
Sbjct: 293 SFRITILPQLYIQPMMGAGLNYECYRFGISPSTNAL-VIGATVMEGFYVIFDRAQKRVGF 351
Query: 491 TPNKC 495
+ C
Sbjct: 352 AASPC 356
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 47/103 (45%), Gaps = 25/103 (24%)
Query: 159 YFSRIGVGTPPRQFSMVLDTGSDINWLQCRPCTECYQQSDPIFDPKTSSSYSPLPCAAPQ 218
Y+ + +GTPP++ +++DTGS + P + D FD + SS+Y +
Sbjct: 15 YYLEMLIGTPPQKLQILVDTGSSNFAVAGTP----HSYIDTYFDTERSSTY--------R 62
Query: 219 CKSLDVSACRANRCLYQVAYGDGSFT--VG-DLVTETVSFGNS 258
K DV+ V Y GS+T VG DLVT F S
Sbjct: 63 SKGFDVT----------VKYTQGSWTGFVGEDLVTIPKGFNTS 95
>pdb|1B5F|A Chain A, Native Cardosin A From Cynara Cardunculus L.
pdb|1B5F|C Chain C, Native Cardosin A From Cynara Cardunculus L
Length = 239
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 26/106 (24%)
Query: 159 YFSRIGVGTPPRQFSMVLDTGSDINWLQCRPCTECYQQSDPIFDPKTSSSYSPLPCAAPQ 218
YF IG+GTPP++F+++ DTGS + W+ P ++C + K ++S
Sbjct: 15 YFGEIGIGTPPQKFTVIFDTGSSVLWV---PSSKC-------INSKACRAHS-------M 57
Query: 219 CKSLDVSACRANRCLYQVAYGDGSF---------TVGDLVTETVSF 255
+S D S + N + YG GS T+GDLV + F
Sbjct: 58 YESSDSSTYKENGTFGAIIYGTGSITGFFSQDSVTIGDLVVKEQDF 103
>pdb|3OAD|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAD|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3O9L|A Chain A, Design And Optimisation Of New Piperidines As Renin
Inhibitors
pdb|3O9L|C Chain C, Design And Optimisation Of New Piperidines As Renin
Inhibitors
Length = 166
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 158 EYFSRIGVGTPPRQFSMVLDTGSDINWLQCRPCTECYQQ--SDPIFDPKTSSSY 209
+Y+ IG+GTPP+ F +V DTGS W+ C+ Y +FD SSSY
Sbjct: 19 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSY 72
>pdb|3D91|A Chain A, Human Renin In Complex With Remikiren
pdb|3D91|B Chain B, Human Renin In Complex With Remikiren
pdb|3G6Z|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G6Z|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3K1W|A Chain A, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3K1W|B Chain B, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3OWN|A Chain A, Potent Macrocyclic Renin Inhibitors
pdb|3OWN|B Chain B, Potent Macrocyclic Renin Inhibitors
Length = 341
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 158 EYFSRIGVGTPPRQFSMVLDTGSDINWLQCRPCTECYQQ--SDPIFDPKTSSSY 209
+Y+ IG+GTPP+ F +V DTGS W+ C+ Y +FD SSSY
Sbjct: 19 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSY 72
>pdb|2BKS|A Chain A, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKS|B Chain B, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKT|A Chain A, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2BKT|B Chain B, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2IKO|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKO|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKU|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IKU|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IL2|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IL2|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2V0Z|C Chain C, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V0Z|O Chain O, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V10|C Chain C, Crystal Structure Of Renin With Inhibitor 9
pdb|2V10|O Chain O, Crystal Structure Of Renin With Inhibitor 9
pdb|2V11|C Chain C, Crystal Structure Of Renin With Inhibitor 6
pdb|2V11|O Chain O, Crystal Structure Of Renin With Inhibitor 6
pdb|2V12|C Chain C, Crystal Structure Of Renin With Inhibitor 8
pdb|2V12|O Chain O, Crystal Structure Of Renin With Inhibitor 8
pdb|1BBS|A Chain A, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1BBS|B Chain B, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1RNE|A Chain A, The Crystal Structure Of Recombinant Glycosylated Human
Renin Alone And In Complex With A Transition State
Analog Inhibitor
pdb|2REN|A Chain A, Structure Of Recombinant Human Renin, A Target For
Cardiovascular- Active Drugs, At 2.5 Angstroms
Resolution
pdb|2V13|A Chain A, Crystal Structure Of Renin With Inhibitor 7
pdb|2V16|C Chain C, Crystal Structure Of Renin With Inhibitor 3
pdb|2V16|O Chain O, Crystal Structure Of Renin With Inhibitor 3
pdb|3G72|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G72|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3OQF|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OQF|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OOT|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OOT|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3Q3T|A Chain A, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3Q3T|B Chain B, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3SFC|A Chain A, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3SFC|B Chain B, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3Q4B|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q4B|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3VSW|A Chain A, Human Renin In Complex With Compound 8
pdb|3VSW|B Chain B, Human Renin In Complex With Compound 8
pdb|3VSX|A Chain A, Human Renin In Complex With Compound 18
pdb|3VSX|B Chain B, Human Renin In Complex With Compound 18
pdb|3VYD|A Chain A, Human Renin In Complex With Inhibitor 6
pdb|3VYD|B Chain B, Human Renin In Complex With Inhibitor 6
pdb|3VYE|A Chain A, Human Renin In Complex With Inhibitor 7
pdb|3VYE|B Chain B, Human Renin In Complex With Inhibitor 7
pdb|3VYF|A Chain A, Human Renin In Complex With Inhibitor 9
pdb|3VYF|B Chain B, Human Renin In Complex With Inhibitor 9
pdb|4GJ8|A Chain A, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ8|B Chain B, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ9|A Chain A, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJ9|B Chain B, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJA|A Chain A, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJA|B Chain B, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJB|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJB|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJC|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJC|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJD|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
pdb|4GJD|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
Length = 340
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 158 EYFSRIGVGTPPRQFSMVLDTGSDINWLQCRPCTECYQQ--SDPIFDPKTSSSY 209
+Y+ IG+GTPP+ F +V DTGS W+ C+ Y +FD SSSY
Sbjct: 19 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSY 72
>pdb|3VCM|A Chain A, Crystal Structure Of Human Prorenin
pdb|3VCM|B Chain B, Crystal Structure Of Human Prorenin
Length = 335
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 158 EYFSRIGVGTPPRQFSMVLDTGSDINWLQCRPCTECYQQ--SDPIFDPKTSSSY 209
+Y+ IG+GTPP+ F +V DTGS W+ C+ Y +FD SSSY
Sbjct: 19 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSY 72
>pdb|1HRN|A Chain A, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1HRN|B Chain B, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1BIM|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIM|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|3GW5|A Chain A, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3GW5|B Chain B, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3KM4|A Chain A, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
pdb|3KM4|B Chain B, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
Length = 337
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 158 EYFSRIGVGTPPRQFSMVLDTGSDINWLQCRPCTECYQQ--SDPIFDPKTSSSY 209
+Y+ IG+GTPP+ F +V DTGS W+ C+ Y +FD SSSY
Sbjct: 16 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSY 69
>pdb|2G24|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G24|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2FS4|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2FS4|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1N|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1N|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1R|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1R|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1Y|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1Y|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G20|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G20|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G21|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G21|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|A Chain A, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|B Chain B, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
Length = 333
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 158 EYFSRIGVGTPPRQFSMVLDTGSDINWLQCRPCTECYQQ--SDPIFDPKTSSSY 209
+Y+ IG+GTPP+ F +V DTGS W+ C+ Y +FD SSSY
Sbjct: 12 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSY 65
>pdb|2I4Q|A Chain A, Human ReninPF02342674 COMPLEX
pdb|2I4Q|B Chain B, Human ReninPF02342674 COMPLEX
Length = 336
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 158 EYFSRIGVGTPPRQFSMVLDTGSDINWLQCRPCTECYQQ--SDPIFDPKTSSSY 209
+Y+ IG+GTPP+ F +V DTGS W+ C+ Y +FD SSSY
Sbjct: 15 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSY 68
>pdb|2X0B|A Chain A, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|C Chain C, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|E Chain E, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|G Chain G, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
Length = 383
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 158 EYFSRIGVGTPPRQFSMVLDTGSDINWLQCRPCTECYQQ--SDPIFDPKTSSSY 209
+Y+ IG+GTPP+ F +V DTGS W+ C+ Y +FD SSSY
Sbjct: 62 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSY 115
>pdb|1G0V|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant,
Mvv
Length = 329
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 52/123 (42%), Gaps = 31/123 (25%)
Query: 158 EYFSRIGVGTPPRQFSMVLDTGSDINWLQCRPCTE--CYQQSDPIFDPKTSSSYSPLPCA 215
+Y++ I +GTPP+ F ++LDTGS W+ C C+ S +D + SSSY
Sbjct: 14 QYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHSK--YDHEASSSY------ 65
Query: 216 APQCKSLDVSACRANRCLYQVAYGDGS---------FTVGDLVTETVSFGNSGSVKGIAL 266
+AN + + YG GS ++GDL F + S G+
Sbjct: 66 ------------KANGTEFAIQYGTGSLEGYISQDTLSIGDLTIPKQDFAEATSEPGLTF 113
Query: 267 GCG 269
G
Sbjct: 114 AFG 116
>pdb|1DP5|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant
Inhibitor
pdb|1DPJ|A Chain A, The Structure Of Proteinase A Complexed With Ia3 Peptide
Inhibitor
pdb|1FMU|A Chain A, Structure Of Native Proteinase A In P3221 Space Group.
pdb|1FMX|A Chain A, Structure Of Native Proteinase A In The Space Group P21
pdb|1FMX|B Chain B, Structure Of Native Proteinase A In The Space Group P21
Length = 329
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 52/123 (42%), Gaps = 31/123 (25%)
Query: 158 EYFSRIGVGTPPRQFSMVLDTGSDINWLQCRPCTE--CYQQSDPIFDPKTSSSYSPLPCA 215
+Y++ I +GTPP+ F ++LDTGS W+ C C+ S +D + SSSY
Sbjct: 14 QYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHSK--YDHEASSSY------ 65
Query: 216 APQCKSLDVSACRANRCLYQVAYGDGS---------FTVGDLVTETVSFGNSGSVKGIAL 266
+AN + + YG GS ++GDL F + S G+
Sbjct: 66 ------------KANGTEFAIQYGTGSLEGYISQDTLSIGDLTIPKQDFAEATSEPGLTF 113
Query: 267 GCG 269
G
Sbjct: 114 AFG 116
>pdb|2JXR|A Chain A, Structure Of Yeast Proteinase A
pdb|1FQ4|A Chain A, Crystal Structure Of A Complex Between Hydroxyethylene
Inhibitor Cp- 108,420 And Yeast Aspartic Proteinase A
pdb|1FQ5|A Chain A, X-Ray Struture Of A Cyclic Statine Inhibitor Pd-129,541
Bound To Yeast Proteinase A
pdb|1FQ6|A Chain A, X-Ray Structure Of Glycol Inhibitor Pd-133,450 Bound To
Saccharopepsin
pdb|1FQ7|A Chain A, X-Ray Structure Of Inhibitor Cp-72,647 Bound To
Saccharopepsin
pdb|1FQ8|A Chain A, X-Ray Structure Of Difluorostatine Inhibitor Cp81,198
Bound To Saccharopepsin
Length = 329
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 52/123 (42%), Gaps = 31/123 (25%)
Query: 158 EYFSRIGVGTPPRQFSMVLDTGSDINWLQCRPCTE--CYQQSDPIFDPKTSSSYSPLPCA 215
+Y++ I +GTPP+ F ++LDTGS W+ C C+ S +D + SSSY
Sbjct: 14 QYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHSK--YDHEASSSY------ 65
Query: 216 APQCKSLDVSACRANRCLYQVAYGDGS---------FTVGDLVTETVSFGNSGSVKGIAL 266
+AN + + YG GS ++GDL F + S G+
Sbjct: 66 ------------KANGTEFAIQYGTGSLEGYISQDTLSIGDLTIPKQDFAEATSEPGLTF 113
Query: 267 GCG 269
G
Sbjct: 114 AFG 116
>pdb|4AA9|A Chain A, Camel Chymosin At 1.6a Resolution
Length = 320
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 34/55 (61%)
Query: 158 EYFSRIGVGTPPRQFSMVLDTGSDINWLQCRPCTECYQQSDPIFDPKTSSSYSPL 212
+YF +I +GTPP++F++V DTGS W+ C ++ FDP+ SS++ L
Sbjct: 12 QYFGKIYIGTPPQEFTVVFDTGSSDLWVPSIYCKSNVCKNHHRFDPRKSSTFRNL 66
>pdb|1QDM|A Chain A, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|B Chain B, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|C Chain C, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase
Length = 478
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 51/110 (46%), Gaps = 14/110 (12%)
Query: 158 EYFSRIGVGTPPRQFSMVLDTGSDINWL---QCRPCTECYQQSDPIFDPKTSSSYSPLPC 214
+YF IGVGTPP++F+++ DTGS W+ +C CY S + SS+Y
Sbjct: 53 QYFGEIGVGTPPQKFTVIFDTGSSNLWVPSAKCYFSIACYLHSR--YKAGASSTYK---- 106
Query: 215 AAPQCKSLDVSACRANRCLYQVAYGDGSFTVGDLVTETVSFGNSGSVKGI 264
K+ +A + + + S TVGDLV + F + GI
Sbjct: 107 -----KNGKPAAIQYGTGSIAGYFSEDSVTVGDLVVKDQEFIEATKEPGI 151
>pdb|1TZS|A Chain A, Crystal Structure Of An Activation Intermediate Of
Cathepsin E
Length = 351
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%)
Query: 158 EYFSRIGVGTPPRQFSMVLDTGSDINWLQCRPCTECYQQSDPIFDPKTSSSYS 210
EYF I +G+PP+ F+++ DTGS W+ CT ++ F P SS+YS
Sbjct: 24 EYFGTISIGSPPQNFTVIFDTGSSNLWVPSVYCTSPACKTHSRFQPSQSSTYS 76
>pdb|1FLH|A Chain A, Crystal Structure Of Human Uropepsin At 2.45 A Resolution
Length = 326
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 47/99 (47%), Gaps = 19/99 (19%)
Query: 158 EYFSRIGVGTPPRQFSMVLDTGSDINWLQCRPCTECYQQSDPIFDPKTSSSYSPLPCAAP 217
EYF IG+GTP + F++V DTGS W+ C+ + F+P+ SS+Y
Sbjct: 13 EYFGTIGIGTPAQDFTVVFDTGSSNLWVPSVYCSSLACTNHNRFNPEDSSTY-------- 64
Query: 218 QCKSLDVSACRANRCLYQVAYGDGSFTVGDLVTETVSFG 256
Q S VS + YG GS T G L +TV G
Sbjct: 65 QSTSETVS----------ITYGTGSMT-GILGYDTVQVG 92
>pdb|1PSO|E Chain E, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|1QRP|E Chain E, Human Pepsin 3a In Complex With A Phosphonate Inhibitor
Iva-Val-Val- Leu(P)-(O)phe-Ala-Ala-Ome
pdb|1PSN|A Chain A, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|3UTL|A Chain A, Human Pepsin 3b
Length = 326
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 47/99 (47%), Gaps = 19/99 (19%)
Query: 158 EYFSRIGVGTPPRQFSMVLDTGSDINWLQCRPCTECYQQSDPIFDPKTSSSYSPLPCAAP 217
EYF IG+GTP + F++V DTGS W+ C+ + F+P+ SS+Y
Sbjct: 13 EYFGTIGIGTPAQDFTVVFDTGSSNLWVPSVYCSSLACTNHNRFNPEDSSTY-------- 64
Query: 218 QCKSLDVSACRANRCLYQVAYGDGSFTVGDLVTETVSFG 256
Q S VS + YG GS T G L +TV G
Sbjct: 65 QSTSETVS----------ITYGTGSMT-GILGYDTVQVG 92
>pdb|3CMS|A Chain A, Engineering Enzyme Sub-Site Specificity: Preparation,
Kinetic Characterization And X-Ray Analysis At
2.0-Angstroms Resolution Of Val111phe Site-Mutated Calf
Chymosin
Length = 323
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 34/55 (61%)
Query: 158 EYFSRIGVGTPPRQFSMVLDTGSDINWLQCRPCTECYQQSDPIFDPKTSSSYSPL 212
+YF +I +GTPP++F+++ DTGS W+ C ++ FDP+ SS++ L
Sbjct: 15 QYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNACKNHQRFDPRKSSTFQNL 69
>pdb|1CZI|E Chain E, Chymosin Complex With The Inhibitor Cp-113972
pdb|1CMS|A Chain A, The Three-Dimensional Structure Of Recombinant Bovine
Chymosin At 2.3 Angstroms Resolution
pdb|4CMS|A Chain A, X-Ray Analyses Of Aspartic Proteinases Iv. Structure And
Refinement At 2.2 Angstroms Resolution Of Bovine
Chymosin
pdb|4AA8|A Chain A, Bovine Chymosin At 1.8a Resolution
Length = 323
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 34/55 (61%)
Query: 158 EYFSRIGVGTPPRQFSMVLDTGSDINWLQCRPCTECYQQSDPIFDPKTSSSYSPL 212
+YF +I +GTPP++F+++ DTGS W+ C ++ FDP+ SS++ L
Sbjct: 15 QYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNACKNHQRFDPRKSSTFQNL 69
>pdb|1AM5|A Chain A, The Crystal Structure And Proposed Amino Acid Sequence Of
A Pepsin From Atlantic Cod (Gadus Morhua)
Length = 324
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 158 EYFSRIGVGTPPRQFSMVLDTGSDINWLQCRPCTECYQQSDPIFDPKTSSSY 209
EY+ I +GTPP F ++ DTGS W+ C+ + F P+ SS+Y
Sbjct: 13 EYYGVISIGTPPESFKVIFDTGSSNLWVSSSHCSAQACSNHNKFKPRQSSTY 64
>pdb|1T6E|X Chain X, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor I
pdb|1T6G|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
pdb|1T6G|B Chain B, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
Length = 381
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 69/182 (37%), Gaps = 27/182 (14%)
Query: 330 PLIRNKKVDTFYYVGLTGFSVGGQAVQIPPSLFEMDEAGDGGIIVDCGTAITRLQTQAYN 389
PL+ K +Y+ VG V +P GG+++ L+ Y
Sbjct: 196 PLV-TKGGSPAHYISARSIVVGDTRVPVPEGALAT-----GGVMLSTRLPYVLLRPDVYR 249
Query: 390 SLRDSFVR-LAG---NLKPTS----GVALFDTCYDF----SGLRSVRVPTVSLHFGAGKA 437
L D+F + LA N P + VA F CYD + L VP V L G
Sbjct: 250 PLMDAFTKALAAQHANGAPVARAVEAVAPFGVCYDTKTLGNNLGGYAVPNVQLGLDGGSD 309
Query: 438 LDLPAKNYLIPVDSAGTFCFAFAPTSSALS--------IIGNVQQQGTRVSFDLANNRVG 489
+ KN ++ V GT C AF + I+G Q + + FD+ R+G
Sbjct: 310 WTMTGKNSMVDVKQ-GTACVAFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFDMEKKRLG 368
Query: 490 FT 491
F+
Sbjct: 369 FS 370
>pdb|3HD8|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
pdb|3HD8|C Chain C, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
Length = 389
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 58/142 (40%), Gaps = 23/142 (16%)
Query: 370 GGIIVDCGTAITRLQTQAYNSLRDSFVRLAGNLKPTSG---------VALFDTCYDFSGL 420
GG+++ L+ Y L D+F + A +P +G VA F+ CYD L
Sbjct: 232 GGVMLSTRLPYVLLRRDVYRPLVDAFTK-ALAAQPANGAPVARAVKPVAPFELCYDTKTL 290
Query: 421 RS----VRVPTVSLHFGAGKALDLPAKNYLIPVDSAGTFCFAFAPT--------SSALSI 468
+ VP V L G + KN ++ V GT C AF S+ I
Sbjct: 291 GNNPGGYWVPNVLLELDGGSDWAMTGKNSMVDVKP-GTACVAFVEMKGVDAGDGSAPAVI 349
Query: 469 IGNVQQQGTRVSFDLANNRVGF 490
+G Q + + FD+ R+GF
Sbjct: 350 LGGAQMEDFVLDFDMEKKRLGF 371
>pdb|3FV3|A Chain A, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|B Chain B, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|C Chain C, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|D Chain D, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|E Chain E, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|F Chain F, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|G Chain G, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|H Chain H, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3TNE|A Chain A, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
pdb|3TNE|B Chain B, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
Length = 339
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 26/110 (23%)
Query: 159 YFSRIGVGTPPRQFSMVLDTGSDINWL-----QCRPCTECYQQSDPIFDPKTSSSYSPLP 213
Y S++ VG+ +Q ++++DTGS W+ QC +C +S F P +SSSY L
Sbjct: 14 YASKVSVGSNKQQQTVIIDTGSSDFWVVDSNAQCGKGVDC--KSSGTFTPSSSSSYKNLG 71
Query: 214 CAAPQCKSLDVSACRANRCLYQVAYGDGSFTVGDLVTETVSFGNSGSVKG 263
A + + YGDGS + G +TV+ N S+ G
Sbjct: 72 AA------------------FTIRYGDGSTSQGTWGKDTVTI-NGVSITG 102
>pdb|1SMR|A Chain A, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|C Chain C, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|E Chain E, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|G Chain G, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
Length = 335
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 143 DFSTPVVSGASQGSGEYFSRIGVGTPPRQFSMVLDTGSDINWLQCRPCTECY 194
D +PVV S +Y+ IG+GTPP+ F ++ DTGS W+ C+ Y
Sbjct: 2 DLISPVVLTNYLNS-QYYGEIGIGTPPQTFKVIFDTGSANLWVPSTKCSRLY 52
>pdb|3PSG|A Chain A, The High Resolution Crystal Structure Of Porcine
Pepsinogen
Length = 370
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 158 EYFSRIGVGTPPRQFSMVLDTGSDINWLQCRPCTECYQQSDPIFDPKTSSSY 209
EYF IG+GTP + F+++ DTGS W+ C+ F+P SS++
Sbjct: 57 EYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTF 108
>pdb|2PSG|A Chain A, Refined Structure Of Porcine Pepsinogen At 1.8 Angstroms
Resolution
Length = 370
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 158 EYFSRIGVGTPPRQFSMVLDTGSDINWLQCRPCTECYQQSDPIFDPKTSSSY 209
EYF IG+GTP + F+++ DTGS W+ C+ F+P SS++
Sbjct: 57 EYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTF 108
>pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At
1.62 Angstroms Resolution
pdb|1AVF|A Chain A, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
pdb|1AVF|J Chain J, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
Length = 329
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 159 YFSRIGVGTPPRQFSMVLDTGSDINWLQCRPCTECYQQSDPIFDPKTSSSYS 210
YF I +GTPP+ F ++ DTGS W+ C S F+P SS+YS
Sbjct: 14 YFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQSQACTSHSRFNPSESSTYS 65
>pdb|5PEP|A Chain A, X-Ray Analyses Of Aspartic Proteases. Ii.
Three-Dimensional Structure Of The Hexagonal Crystal
Form Of Porcine Pepsin At 2.3 Angstroms Resolution
Length = 326
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 158 EYFSRIGVGTPPRQFSMVLDTGSDINWLQCRPCTECYQQSDPIFDPKTSSSY 209
EYF IG+GTP + F+++ DTGS W+ C+ F+P SS++
Sbjct: 13 EYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTF 64
>pdb|1F34|A Chain A, Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bound To
Porcine Pepsin
Length = 326
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 158 EYFSRIGVGTPPRQFSMVLDTGSDINWLQCRPCTECYQQSDPIFDPKTSSSY 209
EYF IG+GTP + F+++ DTGS W+ C+ F+P SS++
Sbjct: 13 EYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTF 64
>pdb|1PSA|A Chain A, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1PSA|B Chain B, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1YX9|A Chain A, Effect Of Dimethyl Sulphoxide On The Crystal Structure Of
Porcine Pepsin
Length = 326
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 158 EYFSRIGVGTPPRQFSMVLDTGSDINWLQCRPCTECYQQSDPIFDPKTSSSY 209
EYF IG+GTP + F+++ DTGS W+ C+ F+P SS++
Sbjct: 13 EYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTF 64
>pdb|3PEP|A Chain A, Revised 2.3 Angstroms Structure Of Porcine Pepsin.
Evidence For A Flexible Subdomain
Length = 326
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 158 EYFSRIGVGTPPRQFSMVLDTGSDINWLQCRPCTECYQQSDPIFDPKTSSSY 209
EYF IG+GTP + F+++ DTGS W+ C+ F+P SS++
Sbjct: 13 EYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTF 64
>pdb|4PEP|A Chain A, The Molecular And Crystal Structures Of Monoclinic Porcine
Pepsin Refined At 1.8 Angstroms Resolution
Length = 326
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 158 EYFSRIGVGTPPRQFSMVLDTGSDINWLQCRPCTECYQQSDPIFDPKTSSSY 209
EYF IG+GTP + F+++ DTGS W+ C+ F+P SS++
Sbjct: 13 EYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTF 64
>pdb|1LYW|A Chain A, Cathepsin D At Ph 7.5
pdb|1LYW|C Chain C, Cathepsin D At Ph 7.5
pdb|1LYW|E Chain E, Cathepsin D At Ph 7.5
pdb|1LYW|G Chain G, Cathepsin D At Ph 7.5
pdb|1LYA|A Chain A, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYA|C Chain C, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|A Chain A, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|C Chain C, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
Length = 97
Score = 38.5 bits (88), Expect = 0.008, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 157 GEYFSRIGVGTPPRQFSMVLDTGSDINWLQCRPC 190
+Y+ IG+GTPP+ F++V DTGS W+ C
Sbjct: 13 AQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHC 46
>pdb|2B42|A Chain A, Crystal Structure Of The Triticum Xylanse Inhibitor-I In
Complex With Bacillus Subtilis Xylanase
Length = 381
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 67/182 (36%), Gaps = 27/182 (14%)
Query: 330 PLIRNKKVDTFYYVGLTGFSVGGQAVQIPPSLFEMDEAGDGGIIVDCGTAITRLQTQAYN 389
PL+ K +Y+ VG V +P GG+++ L+ Y
Sbjct: 196 PLV-TKGGSPAHYISARSIVVGDTRVPVPEGALAT-----GGVMLSTRLPYVLLRPDVYR 249
Query: 390 SLRDSFVR-LAGN-------LKPTSGVALFDTCYDF----SGLRSVRVPTVSLHFGAGKA 437
L D+F + LA + VA F CYD + L VP V L G
Sbjct: 250 PLMDAFTKALAAQHANGAPVARAVVAVAPFGVCYDTKTLGNNLGGYAVPNVQLGLDGGSD 309
Query: 438 LDLPAKNYLIPVDSAGTFCFAFAPTSSALS--------IIGNVQQQGTRVSFDLANNRVG 489
+ KN ++ V GT C AF + I+G Q + + FD+ R+G
Sbjct: 310 WTMTGKNSMVDVKQ-GTACVAFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFDMEKKRLG 368
Query: 490 FT 491
F+
Sbjct: 369 FS 370
>pdb|1LYA|B Chain B, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYA|D Chain D, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYW|B Chain B, Cathepsin D At Ph 7.5
pdb|1LYW|D Chain D, Cathepsin D At Ph 7.5
pdb|1LYW|F Chain F, Cathepsin D At Ph 7.5
pdb|1LYW|H Chain H, Cathepsin D At Ph 7.5
pdb|1LYB|B Chain B, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|D Chain D, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
Length = 241
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 49/125 (39%), Gaps = 18/125 (14%)
Query: 373 IVDCGTAITRLQTQAYNSLRDSFVRLAGNLKPTSGVALFDTCYDFSGLRSVRVPTVSLHF 432
IVD GT++ L+ K V L Y + +P ++L
Sbjct: 124 IVDTGTSLMVGPVDEVRELQ----------KAIGAVPLIQGEYMIPCEKVSTLPAITLKL 173
Query: 433 GAGKALDLPAKNYLIPVDSAG-TFCFA------FAPTSSALSIIGNVQQQGTRVSFDLAN 485
G GK L ++Y + V AG T C + P S L I+G+V FD N
Sbjct: 174 G-GKGYKLSPEDYTLKVSQAGKTLCLSGFMGMDIPPPSGPLWILGDVFIGRYYTVFDRDN 232
Query: 486 NRVGF 490
NRVGF
Sbjct: 233 NRVGF 237
>pdb|1EAG|A Chain A, Secreted Aspartic Proteinase (Sap2) From Candida Albicans
Complexed With A70450
pdb|3PVK|A Chain A, Secreted Aspartic Protease 2 In Complex With Benzamidine
pdb|3Q70|A Chain A, Secreted Aspartic Protease In Complex With Ritonavir
Length = 342
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 13/100 (13%)
Query: 159 YFSRIGVGTPPRQFSMVLDTGSDINWL--QCRPCTECYQQSDPIFDPKTSSSYSPLPCAA 216
Y + I VG+ ++ ++++DTGS W+ C Y F K +Y P +A
Sbjct: 14 YAADITVGSNNQKLNVIVDTGSSDLWVPDVNVDCQVTYSDQTADF-CKQKGTYDPSGSSA 72
Query: 217 PQCKSLDVSACRANRCLYQVAYGDGSFTVGDLVTETVSFG 256
Q D++ +++ YGDGS + G L +TV FG
Sbjct: 73 SQ----DLNTP------FKIGYGDGSSSQGTLYKDTVGFG 102
>pdb|2QZX|A Chain A, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
pdb|2QZX|B Chain B, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
Length = 342
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 13/100 (13%)
Query: 159 YFSRIGVGTPPRQFSMVLDTGSDINWL--QCRPCTECYQQSDPIFDPKTSSSYSPLPCAA 216
Y + I VG+ ++ ++++DTGS W+ C ++ F K++ SYSP
Sbjct: 14 YTADITVGSDNQKLNVIVDTGSSDLWIPDSNVICIPKWRGDKGDF-CKSAGSYSPASSRT 72
Query: 217 PQCKSLDVSACRANRCLYQVAYGDGSFTVGDLVTETVSFG 256
Q + + + YGDGS+ G L +TV G
Sbjct: 73 SQNLN----------TRFDIKYGDGSYAKGKLYKDTVGIG 102
>pdb|2RMP|A Chain A, Rmp-Pepstatin A Complex
pdb|2ASI|A Chain A, Aspartic Proteinase
Length = 361
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 158 EYFSRIGVGTPPRQFSMVLDTGSDINWLQCRPCTECYQ-QSDPIFDPKTSSSY 209
EY + +GTP + F ++ DTGS W+ + CT+ FDP SS++
Sbjct: 19 EYAIPVSIGTPGQDFLLLFDTGSSDTWVPHKGCTKSEGCVGSRFFDPSASSTF 71
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 438 LDLPAKNYLIPVDSAGTFC-FAFAPTSSALSIIGNVQQQGTRVSFDLANNRVGFTP 492
+ +P L+PVD + C F P I+GN+ + +D NNR+GF P
Sbjct: 298 ISVPVSKMLLPVDQSNETCMFIILPDGGNQYIVGNLFLRFFVNVYDFGNNRIGFAP 353
>pdb|2QZW|A Chain A, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
pdb|2QZW|B Chain B, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
Length = 341
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 27/115 (23%)
Query: 159 YFSRIGVGTPPRQFSMVLDTGSDINWL--------QCRPCTEC-YQQSDPIFDPKTSSSY 209
Y + I +G+ ++F++++DTGS W+ + RP + + I+ PK+S++
Sbjct: 14 YAADITIGSNKQKFNVIVDTGSSDLWVPDASVTCDKPRPGQSADFCKGKGIYTPKSSTTS 73
Query: 210 SPLPCAAPQCKSLDVSACRANRCLYQVAYGDGSFTVGDLVTETVSFGNSGSVKGI 264
L P + + YGDGS + G L +TV FG + K +
Sbjct: 74 QNL--GTP----------------FYIGYGDGSSSQGTLYKDTVGFGGASITKQV 110
>pdb|1ZAP|A Chain A, Secreted Aspartic Protease From C. Albicans
Length = 342
Score = 35.4 bits (80), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 13/100 (13%)
Query: 159 YFSRIGVGTPPRQFSMVLDTGSDINWLQ--CRPCTECYQQSDPIFDPKTSSSYSPLPCAA 216
Y + I VG+ ++ ++++DTGS W+ C Y F K +Y P +A
Sbjct: 14 YAADITVGSNNQKLNVIVDTGSSDLWVPDVNIDCQVTYSDQTADF-CKQKGTYDPSGSSA 72
Query: 217 PQCKSLDVSACRANRCLYQVAYGDGSFTVGDLVTETVSFG 256
Q D++ + + YGDGS + G L +TV FG
Sbjct: 73 SQ----DLNTP------FSIGYGDGSSSQGTLYKDTVGFG 102
>pdb|1MPP|A Chain A, X-Ray Analyses Of Aspartic Proteinases. V. Structure And
Refinement At 2.0 Angstroms Resolution Of The Aspartic
Proteinase From Mucor Pusillus
Length = 361
Score = 35.4 bits (80), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 158 EYFSRIGVGTPPRQFSMVLDTGSDINWLQCRPCTE---CYQQSDPIFDPKTSSSY 209
EY + +GTP + F ++ DTGS W+ + C C + FDP +SS++
Sbjct: 19 EYAIPVSIGTPGQDFYLLFDTGSSDTWVPHKGCDNSEGCVGKR--FFDPSSSSTF 71
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 440 LPAKNYLIPVDSAGTFC-FAFAPTSSALSIIGNVQQQGTRVSFDLANNRVGFTP 492
+P L+PVD +G C F P I+GN+ + +D NR+GF P
Sbjct: 300 VPISKMLLPVDKSGETCMFIVLPDGGNQFIVGNLFLRFFVNVYDFGKNRIGFAP 353
>pdb|1WKR|A Chain A, Crystal Structure Of Aspartic Proteinase From Irpex
Lacteus
Length = 340
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 158 EYFSRIGVGTPPRQFSMVLDTGSDINWL 185
+Y +GVG+P +S+++DTGS WL
Sbjct: 13 DYVVNVGVGSPATTYSLLVDTGSSNTWL 40
>pdb|2H6S|A Chain A, Secreted Aspartic Proteinase (sap) 3 From Candida Albicans
pdb|2H6T|A Chain A, Secreted Aspartic Proteinase (Sap) 3 From Candida Albicans
Complexed With Pepstatin A
Length = 340
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 12/99 (12%)
Query: 159 YFSRIGVGTPPRQFSMVLDTGSDINWL-QCRPCTECYQQSDPIFDPKTSSSYSPLPCAAP 217
Y S I VG+ ++ ++V+DTGS W+ + + Q DP F K +YSP ++
Sbjct: 14 YASDITVGSNKQKLTVVIDTGSSDLWVPDSQVSCQAGQGQDPNF-CKNEGTYSPSSSSSS 72
Query: 218 QCKSLDVSACRANRCLYQVAYGDGSFTVGDLVTETVSFG 256
Q + + YGDG+ + G +T+ FG
Sbjct: 73 QNL----------NSPFSIEYGDGTTSQGTWYKDTIGFG 101
>pdb|3C9X|A Chain A, Crystal Structure Of Trichoderma Reesei Aspartic
Proteinase
pdb|3EMY|A Chain A, Crystal Structure Of Trichoderma Reesei Aspartic
Proteinase Complexed With Pepstatin A
Length = 329
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 429 SLHFGAGKA-LDLPAKNY-LIPVDSAGTFCFAFAPTSSAL--SIIGNVQQQGTRVSFDLA 484
S FG G + + +P L P++ + CF +SS + +I G+V + V FDL
Sbjct: 261 SFSFGVGSSTITIPGDLLNLTPLEEGSSTCFGGLQSSSGIGINIFGDVALKAALVVFDLG 320
Query: 485 NNRVGF 490
N R+G+
Sbjct: 321 NERLGW 326
>pdb|1J71|A Chain A, Structure Of The Extracellular Aspartic Proteinase From
Candida Tropicalis Yeast
Length = 334
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 27/107 (25%)
Query: 159 YFSRIGVGTPPRQFSMVLDTGSDINWL-----QCRPC----TECYQQSDPIFDPKTSSSY 209
Y + I VG+ ++ ++V+DTGS W+ +C+ T + + + FDP +SSS
Sbjct: 14 YAADIVVGSNQQKQTVVIDTGSSDLWVVDTDAECQVTYSGQTNNFCKQEGTFDPSSSSSA 73
Query: 210 SPLPCAAPQCKSLDVSACRANRCLYQVAYGDGSFTVGDLVTETVSFG 256
L + + YGD + + G +TV FG
Sbjct: 74 QNLNQD------------------FSIEYGDLTSSQGSFYKDTVGFG 102
>pdb|1DGJ|A Chain A, Crystal Structure Of The Aldehyde Oxidoreductase From
Desulfovibrio Desulfuricans Atcc 27774
Length = 907
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 421 RSVRVPTVSLHFGAGKALDLPAKNYLIPVDSAGTFCFAFAPTSSAL 466
+SV + +L G L+ P L+ + GTF + F+PT AL
Sbjct: 389 KSVAIHLHALMIAPGLGLEFPKDLVLVQNTTGGTFGYKFSPTMEAL 434
>pdb|3QRV|A Chain A, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium
Falciparum
pdb|3QRV|B Chain B, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium
Falciparum
pdb|3QS1|A Chain A, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|B Chain B, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|C Chain C, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|D Chain D, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
Length = 336
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 24/52 (46%)
Query: 159 YFSRIGVGTPPRQFSMVLDTGSDINWLQCRPCTECYQQSDPIFDPKTSSSYS 210
Y+ +G ++F+ + DTGS W+ C ++ ++D S +Y
Sbjct: 23 YYGEAQIGDNKQKFAFIFDTGSANLWVPSAQCNTIGCKTKNLYDSNKSKTYE 74
>pdb|2ANL|A Chain A, X-Ray Crystal Structure Of The Aspartic Protease
Plasmepsin 4 From The Malarial Parasite Plasmodium
Malariae Bound To An Allophenylnorstatine Based
Inhibitor
pdb|2ANL|B Chain B, X-Ray Crystal Structure Of The Aspartic Protease
Plasmepsin 4 From The Malarial Parasite Plasmodium
Malariae Bound To An Allophenylnorstatine Based
Inhibitor
Length = 327
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
Query: 155 GSGEYFSRIGVGTPPRQFSMVLDTGSDINWLQCRPCTECYQQSDPIFDPKTSSSYS 210
G GE VG ++F ++ DTGS W+ + C + ++D S SY
Sbjct: 18 GEGE------VGDNHQKFMLIFDTGSANLWVPSKKCNSIGCSTKHLYDSSKSKSYE 67
>pdb|1F8V|A Chain A, The Structure Of Pariacoto Virus Reveals A Dodecahedral
Cage Of Duplex Rna
pdb|1F8V|B Chain B, The Structure Of Pariacoto Virus Reveals A Dodecahedral
Cage Of Duplex Rna
pdb|1F8V|C Chain C, The Structure Of Pariacoto Virus Reveals A Dodecahedral
Cage Of Duplex Rna
Length = 355
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 423 VRVPTVSLHFGAGKALDLPAKNYLIPVDSAGTFCFAFAPTSSALSIIGNVQQQGTRVSFD 482
V PT + +FGAG LPA N A C PTS+ + G+VQ RV +
Sbjct: 127 VPYPTYATNFGAGSQNGLPAVNNYSKFRYASMAC-GLYPTSNMMQFSGSVQVW--RVDLN 183
Query: 483 LA 484
L+
Sbjct: 184 LS 185
>pdb|1IBQ|A Chain A, Aspergillopepsin From Aspergillus Phoenicis
pdb|1IBQ|B Chain B, Aspergillopepsin From Aspergillus Phoenicis
Length = 325
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 21/99 (21%)
Query: 158 EYFSRIGVGTPPRQFSMVLDTGSDINWLQCRPCTECYQQSDPIFDPKTSSSYSPLPCAAP 217
EY + + VG + DTGS W+ Q ++ P +S
Sbjct: 15 EYLTPVTVG--KSTLHLDFDTGSADLWVFSDELPSSEQTGHDLYTPSSS----------- 61
Query: 218 QCKSLDVSACRANRCLYQVAYGDGSFTVGDLVTETVSFG 256
A + + + ++YGDGS GD+ +TV+ G
Sbjct: 62 --------ATKLSGYSWDISYGDGSSASGDVYRDTVTVG 92
>pdb|3AUP|A Chain A, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|B Chain B, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|C Chain C, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|D Chain D, Crystal Structure Of Basic 7s Globulin From Soybean
Length = 403
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 48/127 (37%), Gaps = 8/127 (6%)
Query: 370 GGIIVDCGTAITRLQTQAYNSLRDSFVRLAGNLKPTSGVALFDTCYDFSGLRSVRVPTVS 429
GG ++ T LQ Y + F + VA F C++ + + + P+V
Sbjct: 260 GGTMISTSTPHMVLQQSVYQAFTQVFAQQLPKQAQVKSVAPFGLCFNSNKINAY--PSVD 317
Query: 430 LHFGA--GKALDLPAKNYLIPVDSAGTFCFAF---APTSSALSIIGNVQQQGTRVSFDLA 484
L G + ++ ++ G C A +G Q + V FDLA
Sbjct: 318 LVMDKPNGPVWRISGEDLMVQAQ-PGVTCLGVMNGGMQPRAEITLGARQLEENLVVFDLA 376
Query: 485 NNRVGFT 491
+RVGF+
Sbjct: 377 RSRVGFS 383
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,796,146
Number of Sequences: 62578
Number of extensions: 501813
Number of successful extensions: 1172
Number of sequences better than 100.0: 69
Number of HSP's better than 100.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1061
Number of HSP's gapped (non-prelim): 101
length of query: 495
length of database: 14,973,337
effective HSP length: 103
effective length of query: 392
effective length of database: 8,527,803
effective search space: 3342898776
effective search space used: 3342898776
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)