Query 011045
Match_columns 495
No_of_seqs 301 out of 1690
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 07:29:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011045.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011045hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 5.2E-74 1.1E-78 603.3 41.2 392 74-495 19-428 (431)
2 KOG1339 Aspartyl protease [Pos 100.0 1.1E-58 2.4E-63 483.9 38.6 333 154-495 42-396 (398)
3 cd05472 cnd41_like Chloroplast 100.0 6.7E-57 1.5E-61 453.4 33.1 291 158-495 1-299 (299)
4 cd05489 xylanase_inhibitor_I_l 100.0 4.5E-56 9.8E-61 457.7 31.2 313 165-493 2-361 (362)
5 cd06096 Plasmepsin_5 Plasmepsi 100.0 1.2E-53 2.5E-58 435.1 31.5 289 157-495 2-325 (326)
6 cd05478 pepsin_A Pepsin A, asp 100.0 1.6E-53 3.5E-58 432.4 30.4 289 156-492 8-317 (317)
7 cd05490 Cathepsin_D2 Cathepsin 100.0 5.3E-53 1.1E-57 430.1 31.9 294 155-492 3-325 (325)
8 cd05477 gastricsin Gastricsins 100.0 6.1E-53 1.3E-57 428.3 31.8 292 156-493 1-318 (318)
9 PTZ00165 aspartyl protease; Pr 100.0 1.5E-52 3.3E-57 443.5 35.6 302 144-495 109-448 (482)
10 cd05486 Cathespin_E Cathepsin 100.0 7.5E-53 1.6E-57 427.4 29.8 289 159-492 1-316 (316)
11 cd05488 Proteinase_A_fungi Fun 100.0 1.1E-51 2.4E-56 419.5 31.1 288 156-492 8-320 (320)
12 cd05487 renin_like Renin stimu 100.0 2.5E-51 5.4E-56 418.0 31.3 293 155-493 5-326 (326)
13 cd05485 Cathepsin_D_like Cathe 100.0 2.7E-51 5.8E-56 418.2 31.2 294 154-492 7-329 (329)
14 cd06098 phytepsin Phytepsin, a 100.0 4.9E-51 1.1E-55 414.3 32.0 281 155-492 7-317 (317)
15 cd05473 beta_secretase_like Be 100.0 3.3E-50 7.1E-55 415.7 30.2 306 157-495 2-347 (364)
16 PTZ00147 plasmepsin-1; Provisi 100.0 7.2E-50 1.6E-54 420.1 32.8 299 143-494 127-450 (453)
17 cd05476 pepsin_A_like_plant Ch 100.0 8E-50 1.7E-54 395.3 28.6 255 158-495 1-265 (265)
18 cd05475 nucellin_like Nucellin 100.0 6.9E-50 1.5E-54 397.5 27.8 251 157-495 1-273 (273)
19 PTZ00013 plasmepsin 4 (PM4); P 100.0 1.3E-48 2.7E-53 410.0 32.5 298 144-494 127-449 (450)
20 cd06097 Aspergillopepsin_like 100.0 2.6E-47 5.5E-52 380.0 26.4 258 159-492 1-278 (278)
21 cd05474 SAP_like SAPs, pepsin- 100.0 1.3E-45 2.8E-50 370.2 28.1 267 158-493 2-295 (295)
22 PF00026 Asp: Eukaryotic aspar 100.0 7.6E-46 1.7E-50 374.7 22.1 290 158-493 1-317 (317)
23 cd05471 pepsin_like Pepsin-lik 100.0 3.6E-44 7.8E-49 356.3 28.2 262 159-492 1-283 (283)
24 PF14543 TAXi_N: Xylanase inhi 100.0 5.6E-32 1.2E-36 248.6 14.3 153 159-320 1-164 (164)
25 PF14541 TAXi_C: Xylanase inhi 100.0 7.6E-29 1.7E-33 227.2 15.3 151 340-492 1-161 (161)
26 cd05470 pepsin_retropepsin_lik 99.9 1.7E-23 3.8E-28 178.7 12.5 105 161-285 1-109 (109)
27 cd05483 retropepsin_like_bacte 98.0 2.6E-05 5.7E-10 64.1 7.3 94 157-287 1-94 (96)
28 TIGR02281 clan_AA_DTGA clan AA 96.5 0.018 3.8E-07 50.1 9.0 95 156-287 9-103 (121)
29 PF13650 Asp_protease_2: Aspar 96.1 0.049 1.1E-06 43.8 8.9 89 161-286 1-89 (90)
30 cd05479 RP_DDI RP_DDI; retrope 94.8 0.1 2.2E-06 45.4 7.0 27 464-490 98-124 (124)
31 cd05479 RP_DDI RP_DDI; retrope 94.1 0.38 8.3E-06 41.8 9.1 92 156-287 14-107 (124)
32 PF11925 DUF3443: Protein of u 92.7 1.5 3.2E-05 45.0 11.7 51 236-288 82-149 (370)
33 cd05484 retropepsin_like_LTR_2 90.1 0.33 7.1E-06 39.6 3.4 28 159-188 1-28 (91)
34 TIGR03698 clan_AA_DTGF clan AA 88.8 2 4.3E-05 36.4 7.3 24 465-488 84-107 (107)
35 PF08284 RVP_2: Retroviral asp 87.4 1.7 3.7E-05 38.5 6.3 30 464-493 103-132 (135)
36 PF13975 gag-asp_proteas: gag- 86.2 1.2 2.6E-05 34.7 4.2 35 156-192 6-40 (72)
37 TIGR02281 clan_AA_DTGA clan AA 86.1 1.8 4E-05 37.4 5.7 36 338-391 9-44 (121)
38 COG3577 Predicted aspartyl pro 81.8 5.7 0.00012 37.5 7.3 82 155-269 102-183 (215)
39 PF00077 RVP: Retroviral aspar 81.8 2 4.4E-05 35.3 4.1 28 160-189 7-34 (100)
40 PF12384 Peptidase_A2B: Ty3 tr 80.3 21 0.00045 32.6 10.0 20 372-391 48-67 (177)
41 PF13650 Asp_protease_2: Aspar 80.0 2.4 5.3E-05 33.6 3.8 29 348-391 3-31 (90)
42 cd05484 retropepsin_like_LTR_2 79.9 3 6.6E-05 33.8 4.4 29 348-391 5-33 (91)
43 cd05483 retropepsin_like_bacte 77.8 4.3 9.2E-05 32.6 4.7 29 348-391 7-35 (96)
44 PF13975 gag-asp_proteas: gag- 74.2 8.2 0.00018 29.9 5.2 29 348-391 13-41 (72)
45 cd05482 HIV_retropepsin_like R 67.7 6.2 0.00013 32.1 3.2 25 162-188 2-26 (87)
46 cd06095 RP_RTVL_H_like Retrope 62.7 10 0.00022 30.4 3.6 29 348-391 3-31 (86)
47 cd06095 RP_RTVL_H_like Retrope 62.1 9.1 0.0002 30.7 3.3 26 162-189 2-27 (86)
48 COG3577 Predicted aspartyl pro 53.2 30 0.00066 32.7 5.5 44 328-391 95-138 (215)
49 PF00077 RVP: Retroviral aspar 52.0 12 0.00025 30.7 2.4 26 347-387 9-34 (100)
50 PF07172 GRP: Glycine rich pro 51.3 6.2 0.00013 32.7 0.6 28 1-30 1-28 (95)
51 cd05481 retropepsin_like_LTR_1 45.2 25 0.00054 28.8 3.3 21 372-392 13-33 (93)
52 PF09668 Asp_protease: Asparty 40.7 35 0.00077 29.7 3.7 29 348-391 29-57 (124)
53 cd06094 RP_Saci_like RP_Saci_l 37.0 1.8E+02 0.004 23.8 7.0 22 368-389 8-29 (89)
54 PF12384 Peptidase_A2B: Ty3 tr 32.0 66 0.0014 29.5 4.0 44 145-188 19-62 (177)
55 PF09668 Asp_protease: Asparty 30.1 84 0.0018 27.4 4.3 36 156-193 22-57 (124)
56 cd05470 pepsin_retropepsin_lik 29.4 51 0.0011 27.0 2.8 18 371-388 13-30 (109)
57 COG5550 Predicted aspartyl pro 25.6 48 0.0011 28.8 1.9 20 372-391 29-49 (125)
58 cd05481 retropepsin_like_LTR_1 24.5 52 0.0011 26.9 1.9 22 163-186 3-25 (93)
59 KOG0012 DNA damage inducible p 21.6 6.1E+02 0.013 26.3 9.1 38 455-492 307-345 (380)
60 TIGR03698 clan_AA_DTGF clan AA 20.3 1.2E+02 0.0025 25.5 3.3 24 161-184 2-29 (107)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=5.2e-74 Score=603.30 Aligned_cols=392 Identities=34% Similarity=0.669 Sum_probs=328.9
Q ss_pred cCCCCeeEEEEEcccCCCCC---CCCChhHHHHHHHHHhHHHHHHHHHHhhhhhcccccccCcccccccCCCceeecccc
Q 011045 74 LNSSSSFSLPLHSREILHKT---RHNDYRSLVLSRLERDSARVNTLITKLQLAIYNVDRHELKPAEAQILPEDFSTPVVS 150 (495)
Q Consensus 74 ~~~~~~~~l~l~hr~~~~~~---~~~~~~~~~~~~~~~d~~R~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 150 (495)
++...+++++|+||++++++ .+.+..++++++++||.+|++++.++.. . ..|+.+
T Consensus 19 ~~~~~~~~~~l~h~~~~~sp~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~------------------~----~~~~~~ 76 (431)
T PLN03146 19 EAPKGGFTVDLIHRDSPKSPFYNPSETPSQRLRNAFRRSISRVNHFRPTDA------------------S----PNDPQS 76 (431)
T ss_pred cccCCceEEEEEeCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHhhccc------------------c----CCcccc
Confidence 34556799999999998764 3456778999999999999999865421 0 124444
Q ss_pred CCCCCceeEEEEEEeCCCCcEEEEEEecCCCCeeEeCCCCCCccCCCCCccCCCCCCcccCCCCCCccccCCCCC-CcCC
Q 011045 151 GASQGSGEYFSRIGVGTPPRQFSMVLDTGSDINWLQCRPCTECYQQSDPIFDPKTSSSYSPLPCAAPQCKSLDVS-ACRA 229 (495)
Q Consensus 151 ~~~~~~g~Y~~~i~IGTP~q~~~livDTGS~~~WV~c~~C~~C~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~~-~C~~ 229 (495)
+...++++|+++|.||||||++.|++||||+++||+|.+|..|+.|.++.|||++|+||+.++|+++.|..+... .|..
T Consensus 77 ~~~~~~~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~~~c~~ 156 (431)
T PLN03146 77 DLISNGGEYLMNISIGTPPVPILAIADTGSDLIWTQCKPCDDCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQASCSD 156 (431)
T ss_pred CcccCCccEEEEEEcCCCCceEEEEECCCCCcceEcCCCCcccccCCCCcccCCCCCCCcccCCCCcccccCCCCCCCCC
Confidence 444567899999999999999999999999999999999999999999999999999999999999999887654 3765
Q ss_pred CC-cceeeecCCCceEEEEEEEEEEEECCC----ccccceEEeEEecCCCCcc-CcceeEeccCCCCCcccccC---CCe
Q 011045 230 NR-CLYQVAYGDGSFTVGDLVTETVSFGNS----GSVKGIALGCGHDNEGLFV-GSAGLLGLGGGMLSLTKQIK---ATS 300 (495)
Q Consensus 230 ~~-c~y~~~Ygdgs~~~G~~~~Dtlt~g~~----~~v~~~~fG~~~~~~g~~~-~~~GIlGLg~~~~S~~sQl~---~~~ 300 (495)
++ |.|.+.|+||+.+.|.+++|+|+|++. ..++++.|||++++.+.|. ..+||||||++++|+++|+. .++
T Consensus 157 ~~~c~y~i~Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~f~~~~~GilGLG~~~~Sl~sql~~~~~~~ 236 (431)
T PLN03146 157 ENTCTYSYSYGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGTFDEKGSGIVGLGGGPLSLISQLGSSIGGK 236 (431)
T ss_pred CCCCeeEEEeCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCCccCCCceeEecCCCCccHHHHhhHhhCCc
Confidence 44 999999999998889999999999832 3689999999999888773 58999999999999999986 368
Q ss_pred EEEEecCCCC--CCcceEEeccCCCC---CceeeeeecCCCCCeeEEEEeeeeEecCeeeecCCCccccccCCCCcEEEc
Q 011045 301 LAYCLVDRDS--PASGVLEFNSARGG---DAVTAPLIRNKKVDTFYYVGLTGFSVGGQAVQIPPSLFEMDEAGDGGIIVD 375 (495)
Q Consensus 301 FS~~L~~~~~--~~~g~L~fGg~d~~---~~~~tpl~~~~~~~~~y~V~l~gIsVgg~~~~i~~~~~~~~~~~~~~~iiD 375 (495)
|||||.+..+ ...|.|+||+...- .+.|+||+.+. .+.+|+|+|++|+||++++.++...|. ..+.+++|||
T Consensus 237 FSycL~~~~~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~-~~~~y~V~L~gIsVgg~~l~~~~~~~~--~~~~g~~iiD 313 (431)
T PLN03146 237 FSYCLVPLSSDSNGTSKINFGTNAIVSGSGVVSTPLVSKD-PDTFYYLTLEAISVGSKKLPYTGSSKN--GVEEGNIIID 313 (431)
T ss_pred EEEECCCCCCCCCCcceEEeCCccccCCCCceEcccccCC-CCCeEEEeEEEEEECCEECcCCccccc--cCCCCcEEEe
Confidence 9999976432 23799999996432 58999998642 257999999999999999998887765 3456789999
Q ss_pred cCccceeecHHHHHHHHHHHHHhhcCCCCCCCCcccccccccCCCcccccceEEEEEcCCcEEEeCCCCceEEecCCCcE
Q 011045 376 CGTAITRLQTQAYNSLRDSFVRLAGNLKPTSGVALFDTCYDFSGLRSVRVPTVSLHFGAGKALDLPAKNYLIPVDSAGTF 455 (495)
Q Consensus 376 SGTt~t~Lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~ltf~f~gg~~~~lp~~~y~~~~~~~g~~ 455 (495)
|||++|+||+++|++|+++|.+.+...+.......++.||+... ...+|+|+||| +|+++.|++++|+++.. .+..
T Consensus 314 SGTt~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~--~~~~P~i~~~F-~Ga~~~l~~~~~~~~~~-~~~~ 389 (431)
T PLN03146 314 SGTTLTLLPSDFYSELESAVEEAIGGERVSDPQGLLSLCYSSTS--DIKLPIITAHF-TGADVKLQPLNTFVKVS-EDLV 389 (431)
T ss_pred CCccceecCHHHHHHHHHHHHHHhccccCCCCCCCCCccccCCC--CCCCCeEEEEE-CCCeeecCcceeEEEcC-CCcE
Confidence 99999999999999999999988764333333345778998432 25799999999 69999999999999876 4678
Q ss_pred EEEEEecCCCceeecHHhhcceEEEEeCCCCEEEEeeCCC
Q 011045 456 CFAFAPTSSALSIIGNVQQQGTRVSFDLANNRVGFTPNKC 495 (495)
Q Consensus 456 Cl~~~~~~~~~~IlG~~fl~~~yvvfD~~~~rIGFa~~~C 495 (495)
|+++.+. .+.||||+.|||++||+||++++|||||+.+|
T Consensus 390 Cl~~~~~-~~~~IlG~~~q~~~~vvyDl~~~~igFa~~~C 428 (431)
T PLN03146 390 CFAMIPT-SSIAIFGNLAQMNFLVGYDLESKTVSFKPTDC 428 (431)
T ss_pred EEEEecC-CCceEECeeeEeeEEEEEECCCCEEeeecCCc
Confidence 9998876 34699999999999999999999999999999
No 2
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-58 Score=483.87 Aligned_cols=333 Identities=44% Similarity=0.832 Sum_probs=281.3
Q ss_pred CCceeEEEEEEeCCCCcEEEEEEecCCCCeeEeCCCCC-CccCCCCCccCCCCCCcccCCCCCCccccCCCCCCcCCCCc
Q 011045 154 QGSGEYFSRIGVGTPPRQFSMVLDTGSDINWLQCRPCT-ECYQQSDPIFDPKTSSSYSPLPCAAPQCKSLDVSACRANRC 232 (495)
Q Consensus 154 ~~~g~Y~~~i~IGTP~q~~~livDTGS~~~WV~c~~C~-~C~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~~~C~~~~c 232 (495)
..+++|+++|.||||||+|.|++||||+++||+|.+|. .|+.+.++.|||++|+||+.++|.+..|.......|.++.|
T Consensus 42 ~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~~~~~~~~~C 121 (398)
T KOG1339|consen 42 YSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSSACYSQHNPIFDPSASSTYKSVGCSSPRCKSLPQSCSPNSSC 121 (398)
T ss_pred ccccccEEEEecCCCCeeeEEEEeCCCCceeeccccccccccccCCCccCccccccccccCCCCccccccccCcccCCcC
Confidence 45689999999999999999999999999999999999 89977777799999999999999999999988774555569
Q ss_pred ceeeecCCCceEEEEEEEEEEEECCC--ccccceEEeEEecCCCC-c--cCcceeEeccCCCCCcccccC-----CCeEE
Q 011045 233 LYQVAYGDGSFTVGDLVTETVSFGNS--GSVKGIALGCGHDNEGL-F--VGSAGLLGLGGGMLSLTKQIK-----ATSLA 302 (495)
Q Consensus 233 ~y~~~Ygdgs~~~G~~~~Dtlt~g~~--~~v~~~~fG~~~~~~g~-~--~~~~GIlGLg~~~~S~~sQl~-----~~~FS 302 (495)
.|.+.||||+.+.|++++|+|+|+.. ..++++.|||+..+.+. . ...+||||||++++|+++|+. .++||
T Consensus 122 ~y~i~Ygd~~~~~G~l~~Dtv~~~~~~~~~~~~~~FGc~~~~~g~~~~~~~~dGIlGLg~~~~S~~~q~~~~~~~~~~FS 201 (398)
T KOG1339|consen 122 PYSIQYGDGSSTSGYLATDTVTFGGTTSLPVPNQTFGCGTNNPGSFGLFAAFDGILGLGRGSLSVPSQLPSFYNAINVFS 201 (398)
T ss_pred ceEEEeCCCCceeEEEEEEEEEEccccccccccEEEEeeecCccccccccccceEeecCCCCccceeecccccCCceeEE
Confidence 99999999888889999999999931 78888999999999763 2 358999999999999999987 33599
Q ss_pred EEecCCCCC--CcceEEeccCCCC----CceeeeeecCCCCCeeEEEEeeeeEecCeeeecCCCccccccCCCCcEEEcc
Q 011045 303 YCLVDRDSP--ASGVLEFNSARGG----DAVTAPLIRNKKVDTFYYVGLTGFSVGGQAVQIPPSLFEMDEAGDGGIIVDC 376 (495)
Q Consensus 303 ~~L~~~~~~--~~g~L~fGg~d~~----~~~~tpl~~~~~~~~~y~V~l~gIsVgg~~~~i~~~~~~~~~~~~~~~iiDS 376 (495)
|||.+.... ..|.|+||+.|.. .+.|+||+.++. .+|+|.|++|+||++. .++...+..+ .+++|+||
T Consensus 202 ~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~--~~y~v~l~~I~vgg~~-~~~~~~~~~~---~~~~iiDS 275 (398)
T KOG1339|consen 202 YCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPS--TYYQVNLDGISVGGKR-PIGSSLFCTD---GGGAIIDS 275 (398)
T ss_pred EEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCC--ccEEEEEeEEEECCcc-CCCcceEecC---CCCEEEEC
Confidence 999877544 3899999999976 689999999743 5999999999999988 6666666432 58899999
Q ss_pred CccceeecHHHHHHHHHHHHHhhcCCCCCCCCcccccccccCCCcccccceEEEEEcCCcEEEeCCCCceEEecCCCcEE
Q 011045 377 GTAITRLQTQAYNSLRDSFVRLAGNLKPTSGVALFDTCYDFSGLRSVRVPTVSLHFGAGKALDLPAKNYLIPVDSAGTFC 456 (495)
Q Consensus 377 GTt~t~Lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~ltf~f~gg~~~~lp~~~y~~~~~~~g~~C 456 (495)
||++++||+++|++|.++|++.+. . ......++..||...... ..+|.|+|+|.+|+.|.|++++|+++.......|
T Consensus 276 GTs~t~lp~~~y~~i~~~~~~~~~-~-~~~~~~~~~~C~~~~~~~-~~~P~i~~~f~~g~~~~l~~~~y~~~~~~~~~~C 352 (398)
T KOG1339|consen 276 GTSLTYLPTSAYNALREAIGAEVS-V-VGTDGEYFVPCFSISTSG-VKLPDITFHFGGGAVFSLPPKNYLVEVSDGGGVC 352 (398)
T ss_pred CcceeeccHHHHHHHHHHHHhhee-c-cccCCceeeecccCCCCc-ccCCcEEEEECCCcEEEeCccceEEEECCCCCce
Confidence 999999999999999999998641 0 011122456799865443 5699999999659999999999999877422239
Q ss_pred EEEEec-CC-CceeecHHhhcceEEEEeCC-CCEEEEee--CCC
Q 011045 457 FAFAPT-SS-ALSIIGNVQQQGTRVSFDLA-NNRVGFTP--NKC 495 (495)
Q Consensus 457 l~~~~~-~~-~~~IlG~~fl~~~yvvfD~~-~~rIGFa~--~~C 495 (495)
+++... +. ..||||+.|||+++++||+. ++|||||+ ..|
T Consensus 353 l~~~~~~~~~~~~ilG~~~~~~~~~~~D~~~~~riGfa~~~~~c 396 (398)
T KOG1339|consen 353 LAFFNGMDSGPLWILGDVFQQNYLVVFDLGENSRVGFAPALTNC 396 (398)
T ss_pred eeEEecCCCCceEEEchHHhCCEEEEEeCCCCCEEEeccccccC
Confidence 976654 33 48999999999999999999 99999999 776
No 3
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=6.7e-57 Score=453.45 Aligned_cols=291 Identities=55% Similarity=0.995 Sum_probs=250.7
Q ss_pred eEEEEEEeCCCCcEEEEEEecCCCCeeEeCCCCCCccCCCCCccCCCCCCcccCCCCCCccccCCCCCCcCCCCcceeee
Q 011045 158 EYFSRIGVGTPPRQFSMVLDTGSDINWLQCRPCTECYQQSDPIFDPKTSSSYSPLPCAAPQCKSLDVSACRANRCLYQVA 237 (495)
Q Consensus 158 ~Y~~~i~IGTP~q~~~livDTGS~~~WV~c~~C~~C~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~~~C~~~~c~y~~~ 237 (495)
+|+++|.||||||++.|++||||+++||+|.+| |.|.+.
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c-----------------------------------------~~~~i~ 39 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC-----------------------------------------CLYQVS 39 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCCCC-----------------------------------------CeeeeE
Confidence 599999999999999999999999999988765 368999
Q ss_pred cCCCceEEEEEEEEEEEECCCc-cccceEEeEEecCCCCccCcceeEeccCCCCCcccccC---CCeEEEEecCCCCCCc
Q 011045 238 YGDGSFTVGDLVTETVSFGNSG-SVKGIALGCGHDNEGLFVGSAGLLGLGGGMLSLTKQIK---ATSLAYCLVDRDSPAS 313 (495)
Q Consensus 238 Ygdgs~~~G~~~~Dtlt~g~~~-~v~~~~fG~~~~~~g~~~~~~GIlGLg~~~~S~~sQl~---~~~FS~~L~~~~~~~~ 313 (495)
|++|+...|.+++|+|+|+ +. .++++.|||+....+.+...+||||||+..++++.|+. .++||+||.+......
T Consensus 40 Yg~Gs~~~G~~~~D~v~ig-~~~~~~~~~Fg~~~~~~~~~~~~~GilGLg~~~~s~~~ql~~~~~~~FS~~L~~~~~~~~ 118 (299)
T cd05472 40 YGDGSYTTGDLATDTLTLG-SSDVVPGFAFGCGHDNEGLFGGAAGLLGLGRGKLSLPSQTASSYGGVFSYCLPDRSSSSS 118 (299)
T ss_pred eCCCceEEEEEEEEEEEeC-CCCccCCEEEECCccCCCccCCCCEEEECCCCcchHHHHhhHhhcCceEEEccCCCCCCC
Confidence 9999987899999999999 66 89999999999888777778999999999999999986 5799999976432447
Q ss_pred ceEEeccCCCC--CceeeeeecCCCCCeeEEEEeeeeEecCeeeecCCCccccccCCCCcEEEccCccceeecHHHHHHH
Q 011045 314 GVLEFNSARGG--DAVTAPLIRNKKVDTFYYVGLTGFSVGGQAVQIPPSLFEMDEAGDGGIIVDCGTAITRLQTQAYNSL 391 (495)
Q Consensus 314 g~L~fGg~d~~--~~~~tpl~~~~~~~~~y~V~l~gIsVgg~~~~i~~~~~~~~~~~~~~~iiDSGTt~t~Lp~~~~~~l 391 (495)
|+|+||++|+. ++.|+|++.++..+.+|.|+|++|+||++.+.+++.. ...+++||||||++++||+++|++|
T Consensus 119 G~l~fGg~d~~~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~-----~~~~~~ivDSGTt~~~lp~~~~~~l 193 (299)
T cd05472 119 GYLSFGAAASVPAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPAS-----FGAGGVIIDSGTVITRLPPSAYAAL 193 (299)
T ss_pred ceEEeCCccccCCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccc-----cCCCCeEEeCCCcceecCHHHHHHH
Confidence 99999999984 8999999987655679999999999999988764322 2356799999999999999999999
Q ss_pred HHHHHHhhcCCCCCCCCcccccccccCCCcccccceEEEEEcCCcEEEeCCCCceEEecCCCcEEEEEEec--CCCceee
Q 011045 392 RDSFVRLAGNLKPTSGVALFDTCYDFSGLRSVRVPTVSLHFGAGKALDLPAKNYLIPVDSAGTFCFAFAPT--SSALSII 469 (495)
Q Consensus 392 ~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~ltf~f~gg~~~~lp~~~y~~~~~~~g~~Cl~~~~~--~~~~~Il 469 (495)
.+++.+.+...+...+...++.||+.++.....+|+|+|+|.+|+.+.|++++|+++....+..|++|... ..+.+||
T Consensus 194 ~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~~g~~~~l~~~~y~~~~~~~~~~C~~~~~~~~~~~~~il 273 (299)
T cd05472 194 RDAFRAAMAAYPRAPGFSILDTCYDLSGFRSVSVPTVSLHFQGGADVELDASGVLYPVDDSSQVCLAFAGTSDDGGLSII 273 (299)
T ss_pred HHHHHHHhccCCCCCCCCCCCccCcCCCCcCCccCCEEEEECCCCEEEeCcccEEEEecCCCCEEEEEeCCCCCCCCEEE
Confidence 99999876544333444456679988776667899999999658999999999999544356789988765 3457999
Q ss_pred cHHhhcceEEEEeCCCCEEEEeeCCC
Q 011045 470 GNVQQQGTRVSFDLANNRVGFTPNKC 495 (495)
Q Consensus 470 G~~fl~~~yvvfD~~~~rIGFa~~~C 495 (495)
|+.|||++|+|||++++|||||+.+|
T Consensus 274 G~~fl~~~~vvfD~~~~~igfa~~~C 299 (299)
T cd05472 274 GNVQQQTFRVVYDVAGGRIGFAPGGC 299 (299)
T ss_pred chHHccceEEEEECCCCEEeEecCCC
Confidence 99999999999999999999999999
No 4
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=4.5e-56 Score=457.68 Aligned_cols=313 Identities=27% Similarity=0.499 Sum_probs=260.7
Q ss_pred eCCCCcE-EEEEEecCCCCeeEeCCCCCCccCCCCCccCCCCCCcccCCCCCCccccCCCC------------CCcCCCC
Q 011045 165 VGTPPRQ-FSMVLDTGSDINWLQCRPCTECYQQSDPIFDPKTSSSYSPLPCAAPQCKSLDV------------SACRANR 231 (495)
Q Consensus 165 IGTP~q~-~~livDTGS~~~WV~c~~C~~C~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~------------~~C~~~~ 231 (495)
+|||-.+ +.|++||||+++||||.+ .+|+||..++|+++.|..... ..|.++.
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~--------------~~sst~~~~~C~s~~C~~~~~~~~~~~~~~~~~~~c~~~~ 67 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDA--------------GHSSTYQTVPCSSSVCSLANRYHCPGTCGGAPGPGCGNNT 67 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCC--------------CCcCCCCccCcCChhhccccccCCCccccCCCCCCCCCCc
Confidence 5788777 999999999999999975 358899999999999986542 2576666
Q ss_pred cceeee-cCCCceEEEEEEEEEEEECCC-------ccccceEEeEEecCC--CCccCcceeEeccCCCCCcccccC----
Q 011045 232 CLYQVA-YGDGSFTVGDLVTETVSFGNS-------GSVKGIALGCGHDNE--GLFVGSAGLLGLGGGMLSLTKQIK---- 297 (495)
Q Consensus 232 c~y~~~-Ygdgs~~~G~~~~Dtlt~g~~-------~~v~~~~fG~~~~~~--g~~~~~~GIlGLg~~~~S~~sQl~---- 297 (495)
|.|... |++|+.+.|++++|+|+|+.. ..++++.|||++++. +.+..++||||||++++|+++|+.
T Consensus 68 C~y~~~~y~~gs~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~~~~~dGIlGLg~~~lSl~sql~~~~~ 147 (362)
T cd05489 68 CTAHPYNPVTGECATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGLPPGAQGVAGLGRSPLSLPAQLASAFG 147 (362)
T ss_pred CeeEccccccCcEeeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCCccccccccccCCCccchHHHhhhhcC
Confidence 989765 789988889999999999731 268899999998864 344568999999999999999986
Q ss_pred -CCeEEEEecCCCCCCcceEEeccCCC----------CCceeeeeecCCCCCeeEEEEeeeeEecCeeeecCCCcccccc
Q 011045 298 -ATSLAYCLVDRDSPASGVLEFNSARG----------GDAVTAPLIRNKKVDTFYYVGLTGFSVGGQAVQIPPSLFEMDE 366 (495)
Q Consensus 298 -~~~FS~~L~~~~~~~~g~L~fGg~d~----------~~~~~tpl~~~~~~~~~y~V~l~gIsVgg~~~~i~~~~~~~~~ 366 (495)
.++|||||++.. ...|.|+||+.+. ..++||||+.++..+.+|+|+|++|+||++++.+++..+..+.
T Consensus 148 ~~~~FS~CL~~~~-~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~~~~~ 226 (362)
T cd05489 148 VARKFALCLPSSP-GGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLSANDR 226 (362)
T ss_pred CCcceEEEeCCCC-CCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCCchhccccc
Confidence 378999998643 3479999999874 3789999998765568999999999999999998877776665
Q ss_pred CCCCcEEEccCccceeecHHHHHHHHHHHHHhhcCCCCCCC-CcccccccccCCC----cccccceEEEEEcC-CcEEEe
Q 011045 367 AGDGGIIVDCGTAITRLQTQAYNSLRDSFVRLAGNLKPTSG-VALFDTCYDFSGL----RSVRVPTVSLHFGA-GKALDL 440 (495)
Q Consensus 367 ~~~~~~iiDSGTt~t~Lp~~~~~~l~~~l~~~~~~~~~~~~-~~~~~~C~~~~~~----~~~~~P~ltf~f~g-g~~~~l 440 (495)
.+.+++||||||++|+||+++|++|.++|.+.+...+.... ...++.||+.... ....+|+|+|||.| |++|+|
T Consensus 227 ~~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~it~~f~g~g~~~~l 306 (362)
T cd05489 227 LGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATARIPRVPAAAVFPELCYPASALGNTRLGYAVPAIDLVLDGGGVNWTI 306 (362)
T ss_pred cCCCcEEEecCCceEEECHHHHHHHHHHHHHHhcccCcCCCCCCCcCccccCCCcCCcccccccceEEEEEeCCCeEEEE
Confidence 67789999999999999999999999999988764433322 1224789985432 24679999999976 799999
Q ss_pred CCCCceEEecCCCcEEEEEEecC---CCceeecHHhhcceEEEEeCCCCEEEEeeC
Q 011045 441 PAKNYLIPVDSAGTFCFAFAPTS---SALSIIGNVQQQGTRVSFDLANNRVGFTPN 493 (495)
Q Consensus 441 p~~~y~~~~~~~g~~Cl~~~~~~---~~~~IlG~~fl~~~yvvfD~~~~rIGFa~~ 493 (495)
++++|+++.. ++.+|++|...+ ...||||+.|||++|++||++++|||||+.
T Consensus 307 ~~~ny~~~~~-~~~~Cl~f~~~~~~~~~~~IlG~~~~~~~~vvyD~~~~riGfa~~ 361 (362)
T cd05489 307 FGANSMVQVK-GGVACLAFVDGGSEPRPAVVIGGHQMEDNLLVFDLEKSRLGFSSS 361 (362)
T ss_pred cCCceEEEcC-CCcEEEEEeeCCCCCCceEEEeeheecceEEEEECCCCEeecccC
Confidence 9999999876 467899998763 357999999999999999999999999974
No 5
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=1.2e-53 Score=435.07 Aligned_cols=289 Identities=28% Similarity=0.500 Sum_probs=244.1
Q ss_pred eeEEEEEEeCCCCcEEEEEEecCCCCeeEeCCCCCCccCCCCCccCCCCCCcccCCCCCCccccCCCCCCcCCCCcceee
Q 011045 157 GEYFSRIGVGTPPRQFSMVLDTGSDINWLQCRPCTECYQQSDPIFDPKTSSSYSPLPCAAPQCKSLDVSACRANRCLYQV 236 (495)
Q Consensus 157 g~Y~~~i~IGTP~q~~~livDTGS~~~WV~c~~C~~C~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~~~C~~~~c~y~~ 236 (495)
++|+++|.||||+|++.|+|||||+++||+|..|..|..+.++.|||++|+|++.+.|++..|.. ...|.++.|.|.+
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~--~~~~~~~~~~~~i 79 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCKNCGIHMEPPYNLNNSITSSILYCDCNKCCY--CLSCLNNKCEYSI 79 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCCCcCCCCCCCcCcccccccccccCCCccccc--cCcCCCCcCcEEE
Confidence 68999999999999999999999999999999999999888899999999999999999999953 3457777799999
Q ss_pred ecCCCceEEEEEEEEEEEECCCcccc-------ceEEeEEecCCCCc--cCcceeEeccCCCCCcc--------cc--cC
Q 011045 237 AYGDGSFTVGDLVTETVSFGNSGSVK-------GIALGCGHDNEGLF--VGSAGLLGLGGGMLSLT--------KQ--IK 297 (495)
Q Consensus 237 ~Ygdgs~~~G~~~~Dtlt~g~~~~v~-------~~~fG~~~~~~g~~--~~~~GIlGLg~~~~S~~--------sQ--l~ 297 (495)
.|++|+...|.+++|+|+|+ +..++ ++.|||+....+.| ...+||||||+...+.. .| +.
T Consensus 80 ~Y~~gs~~~G~~~~D~v~lg-~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~l~~~~~~~ 158 (326)
T cd06096 80 SYSEGSSISGFYFSDFVSFE-SYLNSNSEKESFKKIFGCHTHETNLFLTQQATGILGLSLTKNNGLPTPIILLFTKRPKL 158 (326)
T ss_pred EECCCCceeeEEEEEEEEec-cCCCCccccccccEEeccCccccCcccccccceEEEccCCcccccCchhHHHHHhcccc
Confidence 99999877899999999999 55442 57899999887765 46899999999875321 12 11
Q ss_pred --CCeEEEEecCCCCCCcceEEeccCCCC--------------CceeeeeecCCCCCeeEEEEeeeeEecCeeeecCCCc
Q 011045 298 --ATSLAYCLVDRDSPASGVLEFNSARGG--------------DAVTAPLIRNKKVDTFYYVGLTGFSVGGQAVQIPPSL 361 (495)
Q Consensus 298 --~~~FS~~L~~~~~~~~g~L~fGg~d~~--------------~~~~tpl~~~~~~~~~y~V~l~gIsVgg~~~~i~~~~ 361 (495)
.++||+||.+. .|.|+||++|+. ++.|+|+... .+|.|.+++|+|+++.....
T Consensus 159 ~~~~~FS~~l~~~----~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~~----~~y~v~l~~i~vg~~~~~~~--- 227 (326)
T cd06096 159 KKDKIFSICLSED----GGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITRK----YYYYVKLEGLSVYGTTSNSG--- 227 (326)
T ss_pred cCCceEEEEEcCC----CeEEEECccChhhhcccccccccccCCceEEeccCC----ceEEEEEEEEEEccccccee---
Confidence 38999999753 699999999852 5799999763 79999999999998861110
Q ss_pred cccccCCCCcEEEccCccceeecHHHHHHHHHHHHHhhcCCCCCCCCcccccccccCCCcccccceEEEEEcCCcEEEeC
Q 011045 362 FEMDEAGDGGIIVDCGTAITRLQTQAYNSLRDSFVRLAGNLKPTSGVALFDTCYDFSGLRSVRVPTVSLHFGAGKALDLP 441 (495)
Q Consensus 362 ~~~~~~~~~~~iiDSGTt~t~Lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~ltf~f~gg~~~~lp 441 (495)
......+||||||++++||+++|++|.+++ |+|+|+|.+|++++|+
T Consensus 228 ----~~~~~~aivDSGTs~~~lp~~~~~~l~~~~------------------------------P~i~~~f~~g~~~~i~ 273 (326)
T cd06096 228 ----NTKGLGMLVDSGSTLSHFPEDLYNKINNFF------------------------------PTITIIFENNLKIDWK 273 (326)
T ss_pred ----cccCCCEEEeCCCCcccCCHHHHHHHHhhc------------------------------CcEEEEEcCCcEEEEC
Confidence 123567999999999999999999998775 7899999558999999
Q ss_pred CCCceEEecCCCcEEEEEEecCCCceeecHHhhcceEEEEeCCCCEEEEeeCCC
Q 011045 442 AKNYLIPVDSAGTFCFAFAPTSSALSIIGNVQQQGTRVSFDLANNRVGFTPNKC 495 (495)
Q Consensus 442 ~~~y~~~~~~~g~~Cl~~~~~~~~~~IlG~~fl~~~yvvfD~~~~rIGFa~~~C 495 (495)
|++|+++.+ +..+|+++... .+.+|||++|||++|+|||++++|||||+++|
T Consensus 274 p~~y~~~~~-~~~c~~~~~~~-~~~~ILG~~flr~~y~vFD~~~~riGfa~~~C 325 (326)
T cd06096 274 PSSYLYKKE-SFWCKGGEKSV-SNKPILGASFFKNKQIIFDLDNNRIGFVESNC 325 (326)
T ss_pred HHHhccccC-CceEEEEEecC-CCceEEChHHhcCcEEEEECcCCEEeeEcCCC
Confidence 999999765 23455566554 46799999999999999999999999999999
No 6
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=1.6e-53 Score=432.39 Aligned_cols=289 Identities=24% Similarity=0.413 Sum_probs=245.5
Q ss_pred ceeEEEEEEeCCCCcEEEEEEecCCCCeeEeCCCCCCccCCCCCccCCCCCCcccCCCCCCccccCCCCCCcCCCCccee
Q 011045 156 SGEYFSRIGVGTPPRQFSMVLDTGSDINWLQCRPCTECYQQSDPIFDPKTSSSYSPLPCAAPQCKSLDVSACRANRCLYQ 235 (495)
Q Consensus 156 ~g~Y~~~i~IGTP~q~~~livDTGS~~~WV~c~~C~~C~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~~~C~~~~c~y~ 235 (495)
+.+|+++|.||||+|++.|+|||||+++||+|..|..|.|+.++.|||++|+||+... +.|.
T Consensus 8 ~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~~~~c~~~~~f~~~~Sst~~~~~------------------~~~~ 69 (317)
T cd05478 8 DMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCSSQACSNHNRFNPRQSSTYQSTG------------------QPLS 69 (317)
T ss_pred CCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCCcccccccCcCCCCCCcceeeCC------------------cEEE
Confidence 6899999999999999999999999999999999998777788999999999999877 7899
Q ss_pred eecCCCceEEEEEEEEEEEECCCccccceEEeEEecCCCCc---cCcceeEeccCCCCC------cccc------cCCCe
Q 011045 236 VAYGDGSFTVGDLVTETVSFGNSGSVKGIALGCGHDNEGLF---VGSAGLLGLGGGMLS------LTKQ------IKATS 300 (495)
Q Consensus 236 ~~Ygdgs~~~G~~~~Dtlt~g~~~~v~~~~fG~~~~~~g~~---~~~~GIlGLg~~~~S------~~sQ------l~~~~ 300 (495)
+.|++|+. .|.+++|+|+|+ +..++++.|||++...+.+ ...+||||||+..++ +..| +..++
T Consensus 70 ~~yg~gs~-~G~~~~D~v~ig-~~~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~~g~i~~~~ 147 (317)
T cd05478 70 IQYGTGSM-TGILGYDTVQVG-GISDTNQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGATPVFDNMMSQGLVSQDL 147 (317)
T ss_pred EEECCceE-EEEEeeeEEEEC-CEEECCEEEEEEEecCccccccccccceeeeccchhcccCCCCHHHHHHhCCCCCCCE
Confidence 99999995 599999999999 8999999999999877654 357999999987654 3333 33689
Q ss_pred EEEEecCCCCCCcceEEeccCCCC----CceeeeeecCCCCCeeEEEEeeeeEecCeeeecCCCccccccCCCCcEEEcc
Q 011045 301 LAYCLVDRDSPASGVLEFNSARGG----DAVTAPLIRNKKVDTFYYVGLTGFSVGGQAVQIPPSLFEMDEAGDGGIIVDC 376 (495)
Q Consensus 301 FS~~L~~~~~~~~g~L~fGg~d~~----~~~~tpl~~~~~~~~~y~V~l~gIsVgg~~~~i~~~~~~~~~~~~~~~iiDS 376 (495)
||+||.+.. ...|.|+||++|+. ++.|+|+.. +.+|.|.+++|+||++.+... .+..+||||
T Consensus 148 FS~~L~~~~-~~~g~l~~Gg~d~~~~~g~l~~~p~~~----~~~w~v~l~~v~v~g~~~~~~---------~~~~~iiDT 213 (317)
T cd05478 148 FSVYLSSNG-QQGSVVTFGGIDPSYYTGSLNWVPVTA----ETYWQITVDSVTINGQVVACS---------GGCQAIVDT 213 (317)
T ss_pred EEEEeCCCC-CCCeEEEEcccCHHHccCceEEEECCC----CcEEEEEeeEEEECCEEEccC---------CCCEEEECC
Confidence 999997643 34799999999864 899999965 489999999999999987532 235799999
Q ss_pred CccceeecHHHHHHHHHHHHHhhcCCCCCCCCcccccccccCCCcccccceEEEEEcCCcEEEeCCCCceEEecCCCcEE
Q 011045 377 GTAITRLQTQAYNSLRDSFVRLAGNLKPTSGVALFDTCYDFSGLRSVRVPTVSLHFGAGKALDLPAKNYLIPVDSAGTFC 456 (495)
Q Consensus 377 GTt~t~Lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~ltf~f~gg~~~~lp~~~y~~~~~~~g~~C 456 (495)
||++++||+++|++|.+++++... .. .+|.++|.....+|.|+|+| +|+.++||+++|+++. +..|
T Consensus 214 Gts~~~lp~~~~~~l~~~~~~~~~----~~------~~~~~~C~~~~~~P~~~f~f-~g~~~~i~~~~y~~~~---~~~C 279 (317)
T cd05478 214 GTSLLVGPSSDIANIQSDIGASQN----QN------GEMVVNCSSISSMPDVVFTI-NGVQYPLPPSAYILQD---QGSC 279 (317)
T ss_pred CchhhhCCHHHHHHHHHHhCCccc----cC------CcEEeCCcCcccCCcEEEEE-CCEEEEECHHHheecC---CCEE
Confidence 999999999999999999865321 11 13555666556799999999 8999999999999864 4679
Q ss_pred E-EEEecC-CCceeecHHhhcceEEEEeCCCCEEEEee
Q 011045 457 F-AFAPTS-SALSIIGNVQQQGTRVSFDLANNRVGFTP 492 (495)
Q Consensus 457 l-~~~~~~-~~~~IlG~~fl~~~yvvfD~~~~rIGFa~ 492 (495)
+ +|...+ .+.||||+.|||++|+|||++++|||||+
T Consensus 280 ~~~~~~~~~~~~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 280 TSGFQSMGLGELWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred eEEEEeCCCCCeEEechHHhcceEEEEeCCCCEEeecC
Confidence 8 677653 36799999999999999999999999996
No 7
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=5.3e-53 Score=430.09 Aligned_cols=294 Identities=25% Similarity=0.449 Sum_probs=241.1
Q ss_pred CceeEEEEEEeCCCCcEEEEEEecCCCCeeEeCCCCCCc--cCCCCCccCCCCCCcccCCCCCCccccCCCCCCcCCCCc
Q 011045 155 GSGEYFSRIGVGTPPRQFSMVLDTGSDINWLQCRPCTEC--YQQSDPIFDPKTSSSYSPLPCAAPQCKSLDVSACRANRC 232 (495)
Q Consensus 155 ~~g~Y~~~i~IGTP~q~~~livDTGS~~~WV~c~~C~~C--~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~~~C~~~~c 232 (495)
.+.+|+++|.||||+|++.|++||||+++||+|..|..| .|..++.|||++|+||+... |
T Consensus 3 ~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~~~~y~~~~SsT~~~~~------------------~ 64 (325)
T cd05490 3 MDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLDIACWLHHKYNSSKSSTYVKNG------------------T 64 (325)
T ss_pred cCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCCccccCcCcCCcccCcceeeCC------------------c
Confidence 368999999999999999999999999999999999732 23367899999999998755 8
Q ss_pred ceeeecCCCceEEEEEEEEEEEECCCccccceEEeEEecCCCC-c--cCcceeEeccCCCCCccc------c------cC
Q 011045 233 LYQVAYGDGSFTVGDLVTETVSFGNSGSVKGIALGCGHDNEGL-F--VGSAGLLGLGGGMLSLTK------Q------IK 297 (495)
Q Consensus 233 ~y~~~Ygdgs~~~G~~~~Dtlt~g~~~~v~~~~fG~~~~~~g~-~--~~~~GIlGLg~~~~S~~s------Q------l~ 297 (495)
.|.+.|++|+. .|.+++|+|+|+ +..++++.|||+++..+. | ...+||||||++.++... + +.
T Consensus 65 ~~~i~Yg~G~~-~G~~~~D~v~~g-~~~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~~g~i~ 142 (325)
T cd05490 65 EFAIQYGSGSL-SGYLSQDTVSIG-GLQVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVTPVFDNIMAQKLVE 142 (325)
T ss_pred EEEEEECCcEE-EEEEeeeEEEEC-CEEEcCEEEEEEeeccCCcccceeeeEEEecCCccccccCCCCHHHHHHhcCCCC
Confidence 89999999986 599999999999 899999999999887653 3 457999999998776533 2 33
Q ss_pred CCeEEEEecCCCC-CCcceEEeccCCCC----CceeeeeecCCCCCeeEEEEeeeeEecCeeeecCCCccccccCCCCcE
Q 011045 298 ATSLAYCLVDRDS-PASGVLEFNSARGG----DAVTAPLIRNKKVDTFYYVGLTGFSVGGQAVQIPPSLFEMDEAGDGGI 372 (495)
Q Consensus 298 ~~~FS~~L~~~~~-~~~g~L~fGg~d~~----~~~~tpl~~~~~~~~~y~V~l~gIsVgg~~~~i~~~~~~~~~~~~~~~ 372 (495)
.+.||+||.+... ...|.|+||++|+. ++.|+|+.. ..+|.|++++|+||++.... .....+
T Consensus 143 ~~~FS~~L~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~~~~~----~~~w~v~l~~i~vg~~~~~~---------~~~~~a 209 (325)
T cd05490 143 QNVFSFYLNRDPDAQPGGELMLGGTDPKYYTGDLHYVNVTR----KAYWQIHMDQVDVGSGLTLC---------KGGCEA 209 (325)
T ss_pred CCEEEEEEeCCCCCCCCCEEEECccCHHHcCCceEEEEcCc----ceEEEEEeeEEEECCeeeec---------CCCCEE
Confidence 7899999975422 23799999999975 799999865 37999999999999874321 123579
Q ss_pred EEccCccceeecHHHHHHHHHHHHHhhcCCCCCCCCcccccccccCCCcccccceEEEEEcCCcEEEeCCCCceEEecC-
Q 011045 373 IVDCGTAITRLQTQAYNSLRDSFVRLAGNLKPTSGVALFDTCYDFSGLRSVRVPTVSLHFGAGKALDLPAKNYLIPVDS- 451 (495)
Q Consensus 373 iiDSGTt~t~Lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~ltf~f~gg~~~~lp~~~y~~~~~~- 451 (495)
||||||+++++|.+++++|.+++++. +...+ +|.++|.....+|+|+|+| ||+.++|++++|+++...
T Consensus 210 iiDSGTt~~~~p~~~~~~l~~~~~~~----~~~~~------~~~~~C~~~~~~P~i~f~f-gg~~~~l~~~~y~~~~~~~ 278 (325)
T cd05490 210 IVDTGTSLITGPVEEVRALQKAIGAV----PLIQG------EYMIDCEKIPTLPVISFSL-GGKVYPLTGEDYILKVSQR 278 (325)
T ss_pred EECCCCccccCCHHHHHHHHHHhCCc----cccCC------CEEecccccccCCCEEEEE-CCEEEEEChHHeEEeccCC
Confidence 99999999999999999999988642 12222 2444555556799999999 899999999999997653
Q ss_pred CCcEEE-EEEec-----CCCceeecHHhhcceEEEEeCCCCEEEEee
Q 011045 452 AGTFCF-AFAPT-----SSALSIIGNVQQQGTRVSFDLANNRVGFTP 492 (495)
Q Consensus 452 ~g~~Cl-~~~~~-----~~~~~IlG~~fl~~~yvvfD~~~~rIGFa~ 492 (495)
+...|+ +|+.. ....||||+.|||++|+|||++++|||||+
T Consensus 279 ~~~~C~~~~~~~~~~~~~~~~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 279 GTTICLSGFMGLDIPPPAGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred CCCEEeeEEEECCCCCCCCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence 235898 67653 235799999999999999999999999996
No 8
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=6.1e-53 Score=428.33 Aligned_cols=292 Identities=26% Similarity=0.470 Sum_probs=244.9
Q ss_pred ceeEEEEEEeCCCCcEEEEEEecCCCCeeEeCCCCCCccCCCCCccCCCCCCcccCCCCCCccccCCCCCCcCCCCccee
Q 011045 156 SGEYFSRIGVGTPPRQFSMVLDTGSDINWLQCRPCTECYQQSDPIFDPKTSSSYSPLPCAAPQCKSLDVSACRANRCLYQ 235 (495)
Q Consensus 156 ~g~Y~~~i~IGTP~q~~~livDTGS~~~WV~c~~C~~C~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~~~C~~~~c~y~ 235 (495)
+..|+++|.||||||++.|++||||+++||+|..|..|.|..++.|||++|+||+... |.|+
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~C~~~~~f~~~~SsT~~~~~------------------~~~~ 62 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLCQSQACTNHTKFNPSQSSTYSTNG------------------ETFS 62 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccCCCCCccccccCCCCcccCCCceECC------------------cEEE
Confidence 3689999999999999999999999999999999996555678899999999999876 8899
Q ss_pred eecCCCceEEEEEEEEEEEECCCccccceEEeEEecCCCC-c--cCcceeEeccCCCC------Ccccc------cCCCe
Q 011045 236 VAYGDGSFTVGDLVTETVSFGNSGSVKGIALGCGHDNEGL-F--VGSAGLLGLGGGML------SLTKQ------IKATS 300 (495)
Q Consensus 236 ~~Ygdgs~~~G~~~~Dtlt~g~~~~v~~~~fG~~~~~~g~-~--~~~~GIlGLg~~~~------S~~sQ------l~~~~ 300 (495)
+.|++|+. .|.+++|+++|+ +..++++.|||++...+. + ...+||||||++.. +++.| +..++
T Consensus 63 ~~Yg~Gs~-~G~~~~D~i~~g-~~~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~~g~i~~~~ 140 (318)
T cd05477 63 LQYGSGSL-TGIFGYDTVTVQ-GIIITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVMQGMMQQNLLQAPI 140 (318)
T ss_pred EEECCcEE-EEEEEeeEEEEC-CEEEcCEEEEEEEecccccccccceeeEeecCcccccccCCCCHHHHHHhcCCcCCCE
Confidence 99999986 599999999999 899999999999987653 2 45799999998654 34444 34789
Q ss_pred EEEEecCCCCCCcceEEeccCCCC----CceeeeeecCCCCCeeEEEEeeeeEecCeeeecCCCccccccCCCCcEEEcc
Q 011045 301 LAYCLVDRDSPASGVLEFNSARGG----DAVTAPLIRNKKVDTFYYVGLTGFSVGGQAVQIPPSLFEMDEAGDGGIIVDC 376 (495)
Q Consensus 301 FS~~L~~~~~~~~g~L~fGg~d~~----~~~~tpl~~~~~~~~~y~V~l~gIsVgg~~~~i~~~~~~~~~~~~~~~iiDS 376 (495)
||+||.+......|.|+||++|+. ++.|+|+.. ..+|.|++++|+||++++.+. .....+||||
T Consensus 141 FS~~L~~~~~~~~g~l~fGg~d~~~~~g~l~~~pv~~----~~~w~v~l~~i~v~g~~~~~~--------~~~~~~iiDS 208 (318)
T cd05477 141 FSFYLSGQQGQQGGELVFGGVDNNLYTGQIYWTPVTS----ETYWQIGIQGFQINGQATGWC--------SQGCQAIVDT 208 (318)
T ss_pred EEEEEcCCCCCCCCEEEEcccCHHHcCCceEEEecCC----ceEEEEEeeEEEECCEEeccc--------CCCceeeECC
Confidence 999998654344799999999965 799999965 379999999999999887532 1235689999
Q ss_pred CccceeecHHHHHHHHHHHHHhhcCCCCCCCCcccccccccCCCcccccceEEEEEcCCcEEEeCCCCceEEecCCCcEE
Q 011045 377 GTAITRLQTQAYNSLRDSFVRLAGNLKPTSGVALFDTCYDFSGLRSVRVPTVSLHFGAGKALDLPAKNYLIPVDSAGTFC 456 (495)
Q Consensus 377 GTt~t~Lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~ltf~f~gg~~~~lp~~~y~~~~~~~g~~C 456 (495)
||++++||+++|++|++++++... .. .+|.++|.....+|+|+|+| +|+++.||+++|+++. ...|
T Consensus 209 Gtt~~~lP~~~~~~l~~~~~~~~~----~~------~~~~~~C~~~~~~p~l~~~f-~g~~~~v~~~~y~~~~---~~~C 274 (318)
T cd05477 209 GTSLLTAPQQVMSTLMQSIGAQQD----QY------GQYVVNCNNIQNLPTLTFTI-NGVSFPLPPSAYILQN---NGYC 274 (318)
T ss_pred CCccEECCHHHHHHHHHHhCCccc----cC------CCEEEeCCccccCCcEEEEE-CCEEEEECHHHeEecC---CCeE
Confidence 999999999999999999875422 11 24556666667799999999 7999999999999864 3579
Q ss_pred E-EEEec------CCCceeecHHhhcceEEEEeCCCCEEEEeeC
Q 011045 457 F-AFAPT------SSALSIIGNVQQQGTRVSFDLANNRVGFTPN 493 (495)
Q Consensus 457 l-~~~~~------~~~~~IlG~~fl~~~yvvfD~~~~rIGFa~~ 493 (495)
+ +|.+. ....||||+.|||++|++||++++|||||++
T Consensus 275 ~~~i~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~ig~a~~ 318 (318)
T cd05477 275 TVGIEPTYLPSQNGQPLWILGDVFLRQYYSVYDLGNNQVGFATA 318 (318)
T ss_pred EEEEEecccCCCCCCceEEEcHHHhhheEEEEeCCCCEEeeeeC
Confidence 6 88653 1246999999999999999999999999985
No 9
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=1.5e-52 Score=443.55 Aligned_cols=302 Identities=23% Similarity=0.403 Sum_probs=247.7
Q ss_pred eeeccccCCCCCceeEEEEEEeCCCCcEEEEEEecCCCCeeEeCCCCCCccCCCCCccCCCCCCcccCCCCCCccccCCC
Q 011045 144 FSTPVVSGASQGSGEYFSRIGVGTPPRQFSMVLDTGSDINWLQCRPCTECYQQSDPIFDPKTSSSYSPLPCAAPQCKSLD 223 (495)
Q Consensus 144 ~~~p~~~~~~~~~g~Y~~~i~IGTP~q~~~livDTGS~~~WV~c~~C~~C~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~ 223 (495)
...|+.+ +.+.+|+++|.||||||+|.|++||||+++||+|..|..|.|+.++.|||++|+||+...+...
T Consensus 109 ~~~~l~n---~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~~C~~~~C~~~~~yd~s~SSTy~~~~~~~~------ 179 (482)
T PTZ00165 109 LQQDLLN---FHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSKECKSGGCAPHRKFDPKKSSTYTKLKLGDE------ 179 (482)
T ss_pred cceeccc---ccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEchhcCcccccccCCCCccccCCcEecCCCCc------
Confidence 5566665 3579999999999999999999999999999999999976667889999999999998432110
Q ss_pred CCCcCCCCcceeeecCCCceEEEEEEEEEEEECCCccccceEEeEEecCCC-Cc--cCcceeEeccCCCCCcc-------
Q 011045 224 VSACRANRCLYQVAYGDGSFTVGDLVTETVSFGNSGSVKGIALGCGHDNEG-LF--VGSAGLLGLGGGMLSLT------- 293 (495)
Q Consensus 224 ~~~C~~~~c~y~~~Ygdgs~~~G~~~~Dtlt~g~~~~v~~~~fG~~~~~~g-~~--~~~~GIlGLg~~~~S~~------- 293 (495)
...+.+.||+|+.. |.+++|+|+|+ +..++++.|||++...+ .| ..+|||||||++.++..
T Consensus 180 -------~~~~~i~YGsGs~~-G~l~~DtV~ig-~l~i~~q~FG~a~~~s~~~f~~~~~DGILGLg~~~~s~~s~~~~~p 250 (482)
T PTZ00165 180 -------SAETYIQYGTGECV-LALGKDTVKIG-GLKVKHQSIGLAIEESLHPFADLPFDGLVGLGFPDKDFKESKKALP 250 (482)
T ss_pred -------cceEEEEeCCCcEE-EEEEEEEEEEC-CEEEccEEEEEEEeccccccccccccceeecCCCcccccccCCCCC
Confidence 02567999999887 99999999999 89999999999998765 34 46899999999876322
Q ss_pred --cc------cCCCeEEEEecCCCCCCcceEEeccCCCC------CceeeeeecCCCCCeeEEEEeeeeEecCeeeecCC
Q 011045 294 --KQ------IKATSLAYCLVDRDSPASGVLEFNSARGG------DAVTAPLIRNKKVDTFYYVGLTGFSVGGQAVQIPP 359 (495)
Q Consensus 294 --sQ------l~~~~FS~~L~~~~~~~~g~L~fGg~d~~------~~~~tpl~~~~~~~~~y~V~l~gIsVgg~~~~i~~ 359 (495)
.+ +..+.||+||.+. ....|.|+|||+|+. ++.|+|++.. .+|.|.+++|+||++.+....
T Consensus 251 ~~~~l~~qgli~~~~FS~yL~~~-~~~~G~l~fGGiD~~~~~~~g~i~~~Pv~~~----~yW~i~l~~i~vgg~~~~~~~ 325 (482)
T PTZ00165 251 IVDNIKKQNLLKRNIFSFYMSKD-LNQPGSISFGSADPKYTLEGHKIWWFPVIST----DYWEIEVVDILIDGKSLGFCD 325 (482)
T ss_pred HHHHHHHcCCcccceEEEEeccC-CCCCCEEEeCCcCHHHcCCCCceEEEEcccc----ceEEEEeCeEEECCEEeeecC
Confidence 12 3478999999653 334799999999853 6899999763 799999999999998776431
Q ss_pred CccccccCCCCcEEEccCccceeecHHHHHHHHHHHHHhhcCCCCCCCCcccccccccCCCcccccceEEEEEcCCc---
Q 011045 360 SLFEMDEAGDGGIIVDCGTAITRLQTQAYNSLRDSFVRLAGNLKPTSGVALFDTCYDFSGLRSVRVPTVSLHFGAGK--- 436 (495)
Q Consensus 360 ~~~~~~~~~~~~~iiDSGTt~t~Lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~ltf~f~gg~--- 436 (495)
+...+|+||||+++++|.+++++|.+++++. ..|.. ...+|+|+|+| +|.
T Consensus 326 --------~~~~aIiDTGTSli~lP~~~~~~i~~~i~~~-------------~~C~~-----~~~lP~itf~f-~g~~g~ 378 (482)
T PTZ00165 326 --------RKCKAAIDTGSSLITGPSSVINPLLEKIPLE-------------EDCSN-----KDSLPRISFVL-EDVNGR 378 (482)
T ss_pred --------CceEEEEcCCCccEeCCHHHHHHHHHHcCCc-------------ccccc-----cccCCceEEEE-CCCCCc
Confidence 2357999999999999999999999987532 14754 35789999999 553
Q ss_pred --EEEeCCCCceEEe---cCCCcEEE-EEEecC-----CCceeecHHhhcceEEEEeCCCCEEEEeeCCC
Q 011045 437 --ALDLPAKNYLIPV---DSAGTFCF-AFAPTS-----SALSIIGNVQQQGTRVSFDLANNRVGFTPNKC 495 (495)
Q Consensus 437 --~~~lp~~~y~~~~---~~~g~~Cl-~~~~~~-----~~~~IlG~~fl~~~yvvfD~~~~rIGFa~~~C 495 (495)
++.|++++|+++. ..++..|+ +|.+.+ ++.||||++|||+||+|||.+|+|||||+++|
T Consensus 379 ~v~~~l~p~dYi~~~~~~~~~~~~C~~g~~~~d~~~~~g~~~ILGd~Flr~yy~VFD~~n~rIGfA~a~~ 448 (482)
T PTZ00165 379 KIKFDMDPEDYVIEEGDSEEQEHQCVIGIIPMDVPAPRGPLFVLGNNFIRKYYSIFDRDHMMVGLVPAKH 448 (482)
T ss_pred eEEEEEchHHeeeecccCCCCCCeEEEEEEECCCCCCCCceEEEchhhheeEEEEEeCCCCEEEEEeecc
Confidence 8999999999974 22456897 887642 35799999999999999999999999999987
No 10
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=7.5e-53 Score=427.35 Aligned_cols=289 Identities=26% Similarity=0.439 Sum_probs=239.9
Q ss_pred EEEEEEeCCCCcEEEEEEecCCCCeeEeCCCCCCccCCCCCccCCCCCCcccCCCCCCccccCCCCCCcCCCCcceeeec
Q 011045 159 YFSRIGVGTPPRQFSMVLDTGSDINWLQCRPCTECYQQSDPIFDPKTSSSYSPLPCAAPQCKSLDVSACRANRCLYQVAY 238 (495)
Q Consensus 159 Y~~~i~IGTP~q~~~livDTGS~~~WV~c~~C~~C~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~~~C~~~~c~y~~~Y 238 (495)
|+++|.||||+|++.|+|||||+++||+|..|..+.|+.++.|||++|+||+..+ |.|.+.|
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~~~~C~~~~~y~~~~SsT~~~~~------------------~~~~i~Y 62 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYCTSQACTKHNRFQPSESSTYVSNG------------------EAFSIQY 62 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCCCCcccCccceECCCCCcccccCC------------------cEEEEEe
Confidence 8999999999999999999999999999999985444567899999999999877 8999999
Q ss_pred CCCceEEEEEEEEEEEECCCccccceEEeEEecCCCC-c--cCcceeEeccCCCCCc----------ccc--cCCCeEEE
Q 011045 239 GDGSFTVGDLVTETVSFGNSGSVKGIALGCGHDNEGL-F--VGSAGLLGLGGGMLSL----------TKQ--IKATSLAY 303 (495)
Q Consensus 239 gdgs~~~G~~~~Dtlt~g~~~~v~~~~fG~~~~~~g~-~--~~~~GIlGLg~~~~S~----------~sQ--l~~~~FS~ 303 (495)
++|+. .|.+++|+|+|+ +..++++.|||+....+. | ...+||||||++.++. .+| +..++||+
T Consensus 63 g~g~~-~G~~~~D~v~ig-~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~ 140 (316)
T cd05486 63 GTGSL-TGIIGIDQVTVE-GITVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQNLVELPMFSV 140 (316)
T ss_pred CCcEE-EEEeeecEEEEC-CEEEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHHHHhcCCCCCCEEEE
Confidence 99986 599999999999 899999999999876653 3 4689999999987663 122 44789999
Q ss_pred EecCCCC-CCcceEEeccCCCC----CceeeeeecCCCCCeeEEEEeeeeEecCeeeecCCCccccccCCCCcEEEccCc
Q 011045 304 CLVDRDS-PASGVLEFNSARGG----DAVTAPLIRNKKVDTFYYVGLTGFSVGGQAVQIPPSLFEMDEAGDGGIIVDCGT 378 (495)
Q Consensus 304 ~L~~~~~-~~~g~L~fGg~d~~----~~~~tpl~~~~~~~~~y~V~l~gIsVgg~~~~i~~~~~~~~~~~~~~~iiDSGT 378 (495)
||.+... ...|.|+||++|++ ++.|+|+.. ..+|.|.+++|+||++.+..+ ....+||||||
T Consensus 141 ~L~~~~~~~~~g~l~fGg~d~~~~~g~l~~~pi~~----~~~w~v~l~~i~v~g~~~~~~---------~~~~aiiDTGT 207 (316)
T cd05486 141 YMSRNPNSADGGELVFGGFDTSRFSGQLNWVPVTV----QGYWQIQLDNIQVGGTVIFCS---------DGCQAIVDTGT 207 (316)
T ss_pred EEccCCCCCCCcEEEEcccCHHHcccceEEEECCC----ceEEEEEeeEEEEecceEecC---------CCCEEEECCCc
Confidence 9975422 24799999999975 799999975 479999999999999876532 23579999999
Q ss_pred cceeecHHHHHHHHHHHHHhhcCCCCCCCCcccccccccCCCcccccceEEEEEcCCcEEEeCCCCceEEecC-CCcEEE
Q 011045 379 AITRLQTQAYNSLRDSFVRLAGNLKPTSGVALFDTCYDFSGLRSVRVPTVSLHFGAGKALDLPAKNYLIPVDS-AGTFCF 457 (495)
Q Consensus 379 t~t~Lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~ltf~f~gg~~~~lp~~~y~~~~~~-~g~~Cl 457 (495)
++++||++++++|.+++++. ...+ +|.++|.....+|+|+|+| +|+.++|++++|++.... ++..|+
T Consensus 208 s~~~lP~~~~~~l~~~~~~~-----~~~~------~~~~~C~~~~~~p~i~f~f-~g~~~~l~~~~y~~~~~~~~~~~C~ 275 (316)
T cd05486 208 SLITGPSGDIKQLQNYIGAT-----ATDG------EYGVDCSTLSLMPSVTFTI-NGIPYSLSPQAYTLEDQSDGGGYCS 275 (316)
T ss_pred chhhcCHHHHHHHHHHhCCc-----ccCC------cEEEeccccccCCCEEEEE-CCEEEEeCHHHeEEecccCCCCEEe
Confidence 99999999999998887542 1112 3445555556799999999 899999999999987532 346897
Q ss_pred -EEEec-----CCCceeecHHhhcceEEEEeCCCCEEEEee
Q 011045 458 -AFAPT-----SSALSIIGNVQQQGTRVSFDLANNRVGFTP 492 (495)
Q Consensus 458 -~~~~~-----~~~~~IlG~~fl~~~yvvfD~~~~rIGFa~ 492 (495)
+|+.. .++.||||+.|||++|+|||.+++|||||+
T Consensus 276 ~~~~~~~~~~~~~~~~ILGd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 276 SGFQGLDIPPPAGPLWILGDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred eEEEECCCCCCCCCeEEEchHHhcceEEEEeCCCCEeeccC
Confidence 67653 235799999999999999999999999996
No 11
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=1.1e-51 Score=419.47 Aligned_cols=288 Identities=24% Similarity=0.440 Sum_probs=241.6
Q ss_pred ceeEEEEEEeCCCCcEEEEEEecCCCCeeEeCCCCCCccCCCCCccCCCCCCcccCCCCCCccccCCCCCCcCCCCccee
Q 011045 156 SGEYFSRIGVGTPPRQFSMVLDTGSDINWLQCRPCTECYQQSDPIFDPKTSSSYSPLPCAAPQCKSLDVSACRANRCLYQ 235 (495)
Q Consensus 156 ~g~Y~~~i~IGTP~q~~~livDTGS~~~WV~c~~C~~C~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~~~C~~~~c~y~ 235 (495)
+.+|+++|.||||+|++.|++||||+++||+|..|..+.|..++.|+|++|+||+... |.|.
T Consensus 8 ~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C~~~~C~~~~~y~~~~Sst~~~~~------------------~~~~ 69 (320)
T cd05488 8 NAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKCGSIACFLHSKYDSSASSTYKANG------------------TEFK 69 (320)
T ss_pred CCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCCCCcccCCcceECCCCCcceeeCC------------------CEEE
Confidence 6889999999999999999999999999999999985444466899999999999766 7899
Q ss_pred eecCCCceEEEEEEEEEEEECCCccccceEEeEEecCCCCc---cCcceeEeccCCCCCcccc------------cCCCe
Q 011045 236 VAYGDGSFTVGDLVTETVSFGNSGSVKGIALGCGHDNEGLF---VGSAGLLGLGGGMLSLTKQ------------IKATS 300 (495)
Q Consensus 236 ~~Ygdgs~~~G~~~~Dtlt~g~~~~v~~~~fG~~~~~~g~~---~~~~GIlGLg~~~~S~~sQ------------l~~~~ 300 (495)
+.|++|+. .|.+++|+++|+ +..++++.|||++...+.. ...+||||||++..+...+ +..+.
T Consensus 70 ~~y~~g~~-~G~~~~D~v~ig-~~~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~ 147 (320)
T cd05488 70 IQYGSGSL-EGFVSQDTLSIG-DLTIKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKIVPPFYNMINQGLLDEPV 147 (320)
T ss_pred EEECCceE-EEEEEEeEEEEC-CEEECCEEEEEEecCCCcceeeeeeceEEecCCccccccCCCCHHHHHHhcCCCCCCE
Confidence 99999986 599999999999 8999999999998876642 4679999999988765432 34789
Q ss_pred EEEEecCCCCCCcceEEeccCCCC----CceeeeeecCCCCCeeEEEEeeeeEecCeeeecCCCccccccCCCCcEEEcc
Q 011045 301 LAYCLVDRDSPASGVLEFNSARGG----DAVTAPLIRNKKVDTFYYVGLTGFSVGGQAVQIPPSLFEMDEAGDGGIIVDC 376 (495)
Q Consensus 301 FS~~L~~~~~~~~g~L~fGg~d~~----~~~~tpl~~~~~~~~~y~V~l~gIsVgg~~~~i~~~~~~~~~~~~~~~iiDS 376 (495)
||+||.+.. ...|.|+||++|+. ++.|+|+.. ..+|.|++++|+||++.+... +..+||||
T Consensus 148 FS~~L~~~~-~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~w~v~l~~i~vg~~~~~~~----------~~~~ivDS 212 (320)
T cd05488 148 FSFYLGSSE-EDGGEATFGGIDESRFTGKITWLPVRR----KAYWEVELEKIGLGDEELELE----------NTGAAIDT 212 (320)
T ss_pred EEEEecCCC-CCCcEEEECCcCHHHcCCceEEEeCCc----CcEEEEEeCeEEECCEEeccC----------CCeEEEcC
Confidence 999997643 34799999999864 799999975 379999999999999877532 34689999
Q ss_pred CccceeecHHHHHHHHHHHHHhhcCCCCCCCCcccccccccCCCcccccceEEEEEcCCcEEEeCCCCceEEecCCCcEE
Q 011045 377 GTAITRLQTQAYNSLRDSFVRLAGNLKPTSGVALFDTCYDFSGLRSVRVPTVSLHFGAGKALDLPAKNYLIPVDSAGTFC 456 (495)
Q Consensus 377 GTt~t~Lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~ltf~f~gg~~~~lp~~~y~~~~~~~g~~C 456 (495)
||++++||++++++|.+++++... . ..+|.++|.....+|.|+|+| +|+++.||+++|+++. +..|
T Consensus 213 Gtt~~~lp~~~~~~l~~~~~~~~~----~------~~~~~~~C~~~~~~P~i~f~f-~g~~~~i~~~~y~~~~---~g~C 278 (320)
T cd05488 213 GTSLIALPSDLAEMLNAEIGAKKS----W------NGQYTVDCSKVDSLPDLTFNF-DGYNFTLGPFDYTLEV---SGSC 278 (320)
T ss_pred CcccccCCHHHHHHHHHHhCCccc----c------CCcEEeeccccccCCCEEEEE-CCEEEEECHHHheecC---CCeE
Confidence 999999999999999998854311 1 124556666666799999999 7999999999999853 3469
Q ss_pred E-EEEec-----CCCceeecHHhhcceEEEEeCCCCEEEEee
Q 011045 457 F-AFAPT-----SSALSIIGNVQQQGTRVSFDLANNRVGFTP 492 (495)
Q Consensus 457 l-~~~~~-----~~~~~IlG~~fl~~~yvvfD~~~~rIGFa~ 492 (495)
+ .|... .++.||||+.|||++|++||++++|||||+
T Consensus 279 ~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 279 ISAFTGMDFPEPVGPLAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred EEEEEECcCCCCCCCeEEEchHHhhheEEEEeCCCCEEeecC
Confidence 8 56543 134699999999999999999999999995
No 12
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=2.5e-51 Score=417.99 Aligned_cols=293 Identities=23% Similarity=0.402 Sum_probs=241.8
Q ss_pred CceeEEEEEEeCCCCcEEEEEEecCCCCeeEeCCCCCCc--cCCCCCccCCCCCCcccCCCCCCccccCCCCCCcCCCCc
Q 011045 155 GSGEYFSRIGVGTPPRQFSMVLDTGSDINWLQCRPCTEC--YQQSDPIFDPKTSSSYSPLPCAAPQCKSLDVSACRANRC 232 (495)
Q Consensus 155 ~~g~Y~~~i~IGTP~q~~~livDTGS~~~WV~c~~C~~C--~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~~~C~~~~c 232 (495)
.+..|+++|.||||+|++.|+|||||+++||+|..|..| .|..++.|||++|+||+... |
T Consensus 5 ~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~SsT~~~~~------------------~ 66 (326)
T cd05487 5 LDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYTACVTHNLYDASDSSTYKENG------------------T 66 (326)
T ss_pred CCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcchhhcccCcCCCCCCeeeeECC------------------E
Confidence 368999999999999999999999999999999989753 34467899999999999876 8
Q ss_pred ceeeecCCCceEEEEEEEEEEEECCCccccceEEeEEecCCC-Cc--cCcceeEeccCCCCC----------cccc--cC
Q 011045 233 LYQVAYGDGSFTVGDLVTETVSFGNSGSVKGIALGCGHDNEG-LF--VGSAGLLGLGGGMLS----------LTKQ--IK 297 (495)
Q Consensus 233 ~y~~~Ygdgs~~~G~~~~Dtlt~g~~~~v~~~~fG~~~~~~g-~~--~~~~GIlGLg~~~~S----------~~sQ--l~ 297 (495)
.|++.|++|++ .|.+++|+|+|+ +..+. +.|||+.+..+ .+ ...+||||||++..+ +.+| +.
T Consensus 67 ~~~~~Yg~g~~-~G~~~~D~v~~g-~~~~~-~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~ 143 (326)
T cd05487 67 EFTIHYASGTV-KGFLSQDIVTVG-GIPVT-QMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVTPVFDNIMSQGVLK 143 (326)
T ss_pred EEEEEeCCceE-EEEEeeeEEEEC-CEEee-EEEEEEEeccCCccceeecceEEecCChhhcccCCCCHHHHHHhcCCCC
Confidence 99999999985 599999999999 77774 78999987643 22 468999999998765 3444 55
Q ss_pred CCeEEEEecCCCC-CCcceEEeccCCCC----CceeeeeecCCCCCeeEEEEeeeeEecCeeeecCCCccccccCCCCcE
Q 011045 298 ATSLAYCLVDRDS-PASGVLEFNSARGG----DAVTAPLIRNKKVDTFYYVGLTGFSVGGQAVQIPPSLFEMDEAGDGGI 372 (495)
Q Consensus 298 ~~~FS~~L~~~~~-~~~g~L~fGg~d~~----~~~~tpl~~~~~~~~~y~V~l~gIsVgg~~~~i~~~~~~~~~~~~~~~ 372 (495)
.++||+||.+... ...|.|+||++|+. ++.|+|+.. ..+|.|.|++|+||++.+.+. .+..+
T Consensus 144 ~~~FS~~L~~~~~~~~~G~l~fGg~d~~~y~g~l~~~~~~~----~~~w~v~l~~i~vg~~~~~~~---------~~~~a 210 (326)
T cd05487 144 EDVFSVYYSRDSSHSLGGEIVLGGSDPQHYQGDFHYINTSK----TGFWQIQMKGVSVGSSTLLCE---------DGCTA 210 (326)
T ss_pred CCEEEEEEeCCCCCCCCcEEEECCcChhhccCceEEEECCc----CceEEEEecEEEECCEEEecC---------CCCEE
Confidence 8899999976432 23799999999975 789999865 479999999999999876532 13468
Q ss_pred EEccCccceeecHHHHHHHHHHHHHhhcCCCCCCCCcccccccccCCCcccccceEEEEEcCCcEEEeCCCCceEEecC-
Q 011045 373 IVDCGTAITRLQTQAYNSLRDSFVRLAGNLKPTSGVALFDTCYDFSGLRSVRVPTVSLHFGAGKALDLPAKNYLIPVDS- 451 (495)
Q Consensus 373 iiDSGTt~t~Lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~ltf~f~gg~~~~lp~~~y~~~~~~- 451 (495)
||||||++++||.+++++|++++++... .+ +|.++|.....+|+|+|+| ||+.++|++++|+++...
T Consensus 211 iiDSGts~~~lP~~~~~~l~~~~~~~~~-----~~------~y~~~C~~~~~~P~i~f~f-gg~~~~v~~~~yi~~~~~~ 278 (326)
T cd05487 211 VVDTGASFISGPTSSISKLMEALGAKER-----LG------DYVVKCNEVPTLPDISFHL-GGKEYTLSSSDYVLQDSDF 278 (326)
T ss_pred EECCCccchhCcHHHHHHHHHHhCCccc-----CC------CEEEeccccCCCCCEEEEE-CCEEEEeCHHHhEEeccCC
Confidence 9999999999999999999999864311 11 3445566566799999999 899999999999997643
Q ss_pred CCcEEE-EEEec-----CCCceeecHHhhcceEEEEeCCCCEEEEeeC
Q 011045 452 AGTFCF-AFAPT-----SSALSIIGNVQQQGTRVSFDLANNRVGFTPN 493 (495)
Q Consensus 452 ~g~~Cl-~~~~~-----~~~~~IlG~~fl~~~yvvfD~~~~rIGFa~~ 493 (495)
.+..|+ +|... .++.||||+.|||++|+|||++++|||||++
T Consensus 279 ~~~~C~~~~~~~~~~~~~~~~~ilG~~flr~~y~vfD~~~~~IGfA~a 326 (326)
T cd05487 279 SDKLCTVAFHAMDIPPPTGPLWVLGATFIRKFYTEFDRQNNRIGFALA 326 (326)
T ss_pred CCCEEEEEEEeCCCCCCCCCeEEEehHHhhccEEEEeCCCCEEeeeeC
Confidence 246897 78753 2347999999999999999999999999985
No 13
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=2.7e-51 Score=418.23 Aligned_cols=294 Identities=28% Similarity=0.474 Sum_probs=243.2
Q ss_pred CCceeEEEEEEeCCCCcEEEEEEecCCCCeeEeCCCCCCc--cCCCCCccCCCCCCcccCCCCCCccccCCCCCCcCCCC
Q 011045 154 QGSGEYFSRIGVGTPPRQFSMVLDTGSDINWLQCRPCTEC--YQQSDPIFDPKTSSSYSPLPCAAPQCKSLDVSACRANR 231 (495)
Q Consensus 154 ~~~g~Y~~~i~IGTP~q~~~livDTGS~~~WV~c~~C~~C--~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~~~C~~~~ 231 (495)
+.+.+|+++|.||||+|++.|++||||+++||+|..|..| .|..++.|||++|+||+...
T Consensus 7 ~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~Sst~~~~~------------------ 68 (329)
T cd05485 7 YMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTNIACLLHNKYDSTKSSTYKKNG------------------ 68 (329)
T ss_pred ccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCCccccCCCeECCcCCCCeEECC------------------
Confidence 3478999999999999999999999999999999999732 22356789999999999876
Q ss_pred cceeeecCCCceEEEEEEEEEEEECCCccccceEEeEEecCCCC-c--cCcceeEeccCCCCCcc----------cc--c
Q 011045 232 CLYQVAYGDGSFTVGDLVTETVSFGNSGSVKGIALGCGHDNEGL-F--VGSAGLLGLGGGMLSLT----------KQ--I 296 (495)
Q Consensus 232 c~y~~~Ygdgs~~~G~~~~Dtlt~g~~~~v~~~~fG~~~~~~g~-~--~~~~GIlGLg~~~~S~~----------sQ--l 296 (495)
|.|.+.|++|+. .|.+++|+++|+ +..++++.|||+....+. | ...+||||||++.++.. +| +
T Consensus 69 ~~~~i~Y~~g~~-~G~~~~D~v~ig-~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~~~~l~~qg~i 146 (329)
T cd05485 69 TEFAIQYGSGSL-SGFLSTDTVSVG-GVSVKGQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDGVVPVFYNMVNQKLV 146 (329)
T ss_pred eEEEEEECCceE-EEEEecCcEEEC-CEEECCEEEEEEEecCCccccccccceEEEcCCccccccCCCCHHHHHHhCCCC
Confidence 899999999985 599999999999 889999999999877653 3 45799999999887642 22 3
Q ss_pred CCCeEEEEecCCCCC-CcceEEeccCCCC----CceeeeeecCCCCCeeEEEEeeeeEecCeeeecCCCccccccCCCCc
Q 011045 297 KATSLAYCLVDRDSP-ASGVLEFNSARGG----DAVTAPLIRNKKVDTFYYVGLTGFSVGGQAVQIPPSLFEMDEAGDGG 371 (495)
Q Consensus 297 ~~~~FS~~L~~~~~~-~~g~L~fGg~d~~----~~~~tpl~~~~~~~~~y~V~l~gIsVgg~~~~i~~~~~~~~~~~~~~ 371 (495)
..+.||+||.+..+. ..|.|+||++|+. ++.|+|+.. ..+|.|.+++|+|+++.+. ..+..
T Consensus 147 ~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~~~~i~v~~~~~~----------~~~~~ 212 (329)
T cd05485 147 DAPVFSFYLNRDPSAKEGGELILGGSDPKHYTGNFTYLPVTR----KGYWQFKMDSVSVGEGEFC----------SGGCQ 212 (329)
T ss_pred CCCEEEEEecCCCCCCCCcEEEEcccCHHHcccceEEEEcCC----ceEEEEEeeEEEECCeeec----------CCCcE
Confidence 378999999754322 3799999999864 799999965 4899999999999998653 12356
Q ss_pred EEEccCccceeecHHHHHHHHHHHHHhhcCCCCCCCCcccccccccCCCcccccceEEEEEcCCcEEEeCCCCceEEecC
Q 011045 372 IIVDCGTAITRLQTQAYNSLRDSFVRLAGNLKPTSGVALFDTCYDFSGLRSVRVPTVSLHFGAGKALDLPAKNYLIPVDS 451 (495)
Q Consensus 372 ~iiDSGTt~t~Lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~ltf~f~gg~~~~lp~~~y~~~~~~ 451 (495)
+||||||++++||++++++|.+++++.. . .. .||.++|....++|+|+|+| ||+.+.|++++|+++...
T Consensus 213 ~iiDSGtt~~~lP~~~~~~l~~~~~~~~--~--~~------~~~~~~C~~~~~~p~i~f~f-gg~~~~i~~~~yi~~~~~ 281 (329)
T cd05485 213 AIADTGTSLIAGPVDEIEKLNNAIGAKP--I--IG------GEYMVNCSAIPSLPDITFVL-GGKSFSLTGKDYVLKVTQ 281 (329)
T ss_pred EEEccCCcceeCCHHHHHHHHHHhCCcc--c--cC------CcEEEeccccccCCcEEEEE-CCEEeEEChHHeEEEecC
Confidence 9999999999999999999999886431 1 11 24556666667789999999 899999999999998764
Q ss_pred C-CcEEE-EEEec-----CCCceeecHHhhcceEEEEeCCCCEEEEee
Q 011045 452 A-GTFCF-AFAPT-----SSALSIIGNVQQQGTRVSFDLANNRVGFTP 492 (495)
Q Consensus 452 ~-g~~Cl-~~~~~-----~~~~~IlG~~fl~~~yvvfD~~~~rIGFa~ 492 (495)
. ...|+ +|+.. .++.||||+.|||++|+|||++++|||||.
T Consensus 282 ~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 282 MGQTICLSGFMGIDIPPPAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred CCCCEEeeeEEECcCCCCCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 2 46898 67753 234799999999999999999999999984
No 14
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=4.9e-51 Score=414.26 Aligned_cols=281 Identities=27% Similarity=0.512 Sum_probs=233.7
Q ss_pred CceeEEEEEEeCCCCcEEEEEEecCCCCeeEeCCCCC---CccCCCCCccCCCCCCcccCCCCCCccccCCCCCCcCCCC
Q 011045 155 GSGEYFSRIGVGTPPRQFSMVLDTGSDINWLQCRPCT---ECYQQSDPIFDPKTSSSYSPLPCAAPQCKSLDVSACRANR 231 (495)
Q Consensus 155 ~~g~Y~~~i~IGTP~q~~~livDTGS~~~WV~c~~C~---~C~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~~~C~~~~ 231 (495)
.+.+|+++|.||||+|++.|++||||+++||+|..|. .|. .++.|||++|+||+..+
T Consensus 7 ~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C~--~~~~y~~~~SsT~~~~~------------------ 66 (317)
T cd06098 7 LDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIACY--FHSKYKSSKSSTYKKNG------------------ 66 (317)
T ss_pred CCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCCCcccc--ccCcCCcccCCCcccCC------------------
Confidence 4789999999999999999999999999999999996 575 56899999999999876
Q ss_pred cceeeecCCCceEEEEEEEEEEEECCCccccceEEeEEecCCCC-c--cCcceeEeccCCCCCcc----------cc--c
Q 011045 232 CLYQVAYGDGSFTVGDLVTETVSFGNSGSVKGIALGCGHDNEGL-F--VGSAGLLGLGGGMLSLT----------KQ--I 296 (495)
Q Consensus 232 c~y~~~Ygdgs~~~G~~~~Dtlt~g~~~~v~~~~fG~~~~~~g~-~--~~~~GIlGLg~~~~S~~----------sQ--l 296 (495)
+.+.+.|++|+.. |.+++|+|+|+ +..++++.|||++...+. | ...+||||||++.++.. .| +
T Consensus 67 ~~~~i~Yg~G~~~-G~~~~D~v~ig-~~~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i 144 (317)
T cd06098 67 TSASIQYGTGSIS-GFFSQDSVTVG-DLVVKNQVFIEATKEPGLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVEQGLV 144 (317)
T ss_pred CEEEEEcCCceEE-EEEEeeEEEEC-CEEECCEEEEEEEecCCccccccccceeccccccchhhcCCCCHHHHHHhcCCC
Confidence 7889999999865 99999999999 899999999999876542 2 46899999999876542 22 4
Q ss_pred CCCeEEEEecCCCC-CCcceEEeccCCCC----CceeeeeecCCCCCeeEEEEeeeeEecCeeeecCCCccccccCCCCc
Q 011045 297 KATSLAYCLVDRDS-PASGVLEFNSARGG----DAVTAPLIRNKKVDTFYYVGLTGFSVGGQAVQIPPSLFEMDEAGDGG 371 (495)
Q Consensus 297 ~~~~FS~~L~~~~~-~~~g~L~fGg~d~~----~~~~tpl~~~~~~~~~y~V~l~gIsVgg~~~~i~~~~~~~~~~~~~~ 371 (495)
..++||+||.+... ...|.|+||++|+. ++.|+|+.. ..+|.|.+++|+||++.+.+.. ....
T Consensus 145 ~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~l~~~pv~~----~~~w~v~l~~i~v~g~~~~~~~--------~~~~ 212 (317)
T cd06098 145 KEPVFSFWLNRNPDEEEGGELVFGGVDPKHFKGEHTYVPVTR----KGYWQFEMGDVLIGGKSTGFCA--------GGCA 212 (317)
T ss_pred CCCEEEEEEecCCCCCCCcEEEECccChhhcccceEEEecCc----CcEEEEEeCeEEECCEEeeecC--------CCcE
Confidence 47899999975422 24799999999975 799999975 3799999999999998875432 2356
Q ss_pred EEEccCccceeecHHHHHHHHHHHHHhhcCCCCCCCCcccccccccCCCcccccceEEEEEcCCcEEEeCCCCceEEecC
Q 011045 372 IIVDCGTAITRLQTQAYNSLRDSFVRLAGNLKPTSGVALFDTCYDFSGLRSVRVPTVSLHFGAGKALDLPAKNYLIPVDS 451 (495)
Q Consensus 372 ~iiDSGTt~t~Lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~ltf~f~gg~~~~lp~~~y~~~~~~ 451 (495)
+||||||++++||++++++|. ....|+. ...+|+|+|+| +|+.++|++++|+++...
T Consensus 213 aivDTGTs~~~lP~~~~~~i~-----------------~~~~C~~-----~~~~P~i~f~f-~g~~~~l~~~~yi~~~~~ 269 (317)
T cd06098 213 AIADSGTSLLAGPTTIVTQIN-----------------SAVDCNS-----LSSMPNVSFTI-GGKTFELTPEQYILKVGE 269 (317)
T ss_pred EEEecCCcceeCCHHHHHhhh-----------------ccCCccc-----cccCCcEEEEE-CCEEEEEChHHeEEeecC
Confidence 899999999999998876653 1123654 35689999999 899999999999987653
Q ss_pred -CCcEEE-EEEec-----CCCceeecHHhhcceEEEEeCCCCEEEEee
Q 011045 452 -AGTFCF-AFAPT-----SSALSIIGNVQQQGTRVSFDLANNRVGFTP 492 (495)
Q Consensus 452 -~g~~Cl-~~~~~-----~~~~~IlG~~fl~~~yvvfD~~~~rIGFa~ 492 (495)
....|+ +|... .+..||||+.|||++|+|||++++|||||+
T Consensus 270 ~~~~~C~~~~~~~~~~~~~~~~~IlGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 270 GAAAQCISGFTALDVPPPRGPLWILGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred CCCCEEeceEEECCCCCCCCCeEEechHHhcccEEEEeCCCCEEeecC
Confidence 235897 67643 234799999999999999999999999995
No 15
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=3.3e-50 Score=415.74 Aligned_cols=306 Identities=26% Similarity=0.392 Sum_probs=235.5
Q ss_pred eeEEEEEEeCCCCcEEEEEEecCCCCeeEeCCCCCCccCCCCCccCCCCCCcccCCCCCCccccCCCCCCcCCCCcceee
Q 011045 157 GEYFSRIGVGTPPRQFSMVLDTGSDINWLQCRPCTECYQQSDPIFDPKTSSSYSPLPCAAPQCKSLDVSACRANRCLYQV 236 (495)
Q Consensus 157 g~Y~~~i~IGTP~q~~~livDTGS~~~WV~c~~C~~C~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~~~C~~~~c~y~~ 236 (495)
.+|+++|.||||+|++.|+|||||+++||+|.+|.. .++.|||++|+||+..+ |.|++
T Consensus 2 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~~~----~~~~f~~~~SsT~~~~~------------------~~~~i 59 (364)
T cd05473 2 QGYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPHPF----IHTYFHRELSSTYRDLG------------------KGVTV 59 (364)
T ss_pred CceEEEEEecCCCceEEEEEecCCcceEEEcCCCcc----ccccCCchhCcCcccCC------------------ceEEE
Confidence 369999999999999999999999999999988743 46789999999999987 78999
Q ss_pred ecCCCceEEEEEEEEEEEECCCcccc--ceEEeEEecCCCCc---cCcceeEeccCCCCC------------cccccC-C
Q 011045 237 AYGDGSFTVGDLVTETVSFGNSGSVK--GIALGCGHDNEGLF---VGSAGLLGLGGGMLS------------LTKQIK-A 298 (495)
Q Consensus 237 ~Ygdgs~~~G~~~~Dtlt~g~~~~v~--~~~fG~~~~~~g~~---~~~~GIlGLg~~~~S------------~~sQl~-~ 298 (495)
.|++|+.. |.+++|+|+|+ +.... .+.|++..+..+.+ ...+||||||++.++ +.+|.. .
T Consensus 60 ~Yg~Gs~~-G~~~~D~v~ig-~~~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~~q~~~~ 137 (364)
T cd05473 60 PYTQGSWE-GELGTDLVSIP-KGPNVTFRANIAAITESENFFLNGSNWEGILGLAYAELARPDSSVEPFFDSLVKQTGIP 137 (364)
T ss_pred EECcceEE-EEEEEEEEEEC-CCCccceEEeeEEEeccccceecccccceeeeecccccccCCCCCCCHHHHHHhccCCc
Confidence 99999875 99999999998 42111 12356666655544 257999999998763 344433 5
Q ss_pred CeEEEEecCC--------CCCCcceEEeccCCCC----CceeeeeecCCCCCeeEEEEeeeeEecCeeeecCCCcccccc
Q 011045 299 TSLAYCLVDR--------DSPASGVLEFNSARGG----DAVTAPLIRNKKVDTFYYVGLTGFSVGGQAVQIPPSLFEMDE 366 (495)
Q Consensus 299 ~~FS~~L~~~--------~~~~~g~L~fGg~d~~----~~~~tpl~~~~~~~~~y~V~l~gIsVgg~~~~i~~~~~~~~~ 366 (495)
++||+||... .....|.|+||++|+. ++.|+|++. ..+|.|.+++|+||++.+.++...+
T Consensus 138 ~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~~----~~~~~v~l~~i~vg~~~~~~~~~~~---- 209 (364)
T cd05473 138 DVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKGDIWYTPIRE----EWYYEVIILKLEVGGQSLNLDCKEY---- 209 (364)
T ss_pred cceEEEecccccccccccccCCCcEEEeCCcCHhhcCCCceEEecCc----ceeEEEEEEEEEECCEecccccccc----
Confidence 6899988421 1123799999999865 799999975 3799999999999999887554332
Q ss_pred CCCCcEEEccCccceeecHHHHHHHHHHHHHhhcCCCCCCCC--cccccccccCCCcccccceEEEEEcCC-----cEEE
Q 011045 367 AGDGGIIVDCGTAITRLQTQAYNSLRDSFVRLAGNLKPTSGV--ALFDTCYDFSGLRSVRVPTVSLHFGAG-----KALD 439 (495)
Q Consensus 367 ~~~~~~iiDSGTt~t~Lp~~~~~~l~~~l~~~~~~~~~~~~~--~~~~~C~~~~~~~~~~~P~ltf~f~gg-----~~~~ 439 (495)
....+||||||++++||+++|++|.+++++.........+. .....|+.........+|+|+|+|.|+ ..+.
T Consensus 210 -~~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~g~~~~~~~~l~ 288 (364)
T cd05473 210 -NYDKAIVDSGTTNLRLPVKVFNAAVDAIKAASLIEDFPDGFWLGSQLACWQKGTTPWEIFPKISIYLRDENSSQSFRIT 288 (364)
T ss_pred -cCccEEEeCCCcceeCCHHHHHHHHHHHHhhcccccCCccccCcceeecccccCchHhhCCcEEEEEccCCCCceEEEE
Confidence 12368999999999999999999999998874311111111 123468765433334699999999642 4789
Q ss_pred eCCCCceEEecC--CCcEEEEEEec-CCCceeecHHhhcceEEEEeCCCCEEEEeeCCC
Q 011045 440 LPAKNYLIPVDS--AGTFCFAFAPT-SSALSIIGNVQQQGTRVSFDLANNRVGFTPNKC 495 (495)
Q Consensus 440 lp~~~y~~~~~~--~g~~Cl~~~~~-~~~~~IlG~~fl~~~yvvfD~~~~rIGFa~~~C 495 (495)
|+|++|+.+... .+..|+++... ..+.||||+.|||++|+|||++++|||||+.+|
T Consensus 289 l~p~~Y~~~~~~~~~~~~C~~~~~~~~~~~~ILG~~flr~~yvvfD~~~~rIGfa~~~C 347 (364)
T cd05473 289 ILPQLYLRPVEDHGTQLDCYKFAISQSTNGTVIGAVIMEGFYVVFDRANKRVGFAVSTC 347 (364)
T ss_pred ECHHHhhhhhccCCCcceeeEEeeecCCCceEEeeeeEcceEEEEECCCCEEeeEeccc
Confidence 999999986432 24689854332 235799999999999999999999999999999
No 16
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=7.2e-50 Score=420.14 Aligned_cols=299 Identities=22% Similarity=0.365 Sum_probs=241.8
Q ss_pred ceeeccccCCCCCceeEEEEEEeCCCCcEEEEEEecCCCCeeEeCCCCCCccCCCCCccCCCCCCcccCCCCCCccccCC
Q 011045 143 DFSTPVVSGASQGSGEYFSRIGVGTPPRQFSMVLDTGSDINWLQCRPCTECYQQSDPIFDPKTSSSYSPLPCAAPQCKSL 222 (495)
Q Consensus 143 ~~~~p~~~~~~~~~g~Y~~~i~IGTP~q~~~livDTGS~~~WV~c~~C~~C~~~~~~~f~p~~SsT~~~~~C~~~~C~~~ 222 (495)
...+|+.+- .+.+|+++|.||||+|++.|++||||+++||+|..|..|.|+.++.|||++|+||+..+
T Consensus 127 ~~~v~L~n~---~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~~~~C~~~~~yd~s~SsT~~~~~--------- 194 (453)
T PTZ00147 127 FDNVELKDL---ANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCTTEGCETKNLYDSSKSKTYEKDG--------- 194 (453)
T ss_pred CCeeecccc---CCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCCCcccccCCCccCCccCcceEECC---------
Confidence 345666553 36899999999999999999999999999999999997767788999999999999877
Q ss_pred CCCCcCCCCcceeeecCCCceEEEEEEEEEEEECCCccccceEEeEEecCCCC---c--cCcceeEeccCCCCCccc---
Q 011045 223 DVSACRANRCLYQVAYGDGSFTVGDLVTETVSFGNSGSVKGIALGCGHDNEGL---F--VGSAGLLGLGGGMLSLTK--- 294 (495)
Q Consensus 223 ~~~~C~~~~c~y~~~Ygdgs~~~G~~~~Dtlt~g~~~~v~~~~fG~~~~~~g~---~--~~~~GIlGLg~~~~S~~s--- 294 (495)
+.|++.|++|+. .|.+++|+|+|+ +..++ ..|+|+.+..+. + ...+||||||++.++...
T Consensus 195 ---------~~f~i~Yg~Gsv-sG~~~~DtVtiG-~~~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~~~~p 262 (453)
T PTZ00147 195 ---------TKVEMNYVSGTV-SGFFSKDLVTIG-NLSVP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIGSVDP 262 (453)
T ss_pred ---------CEEEEEeCCCCE-EEEEEEEEEEEC-CEEEE-EEEEEEEeccCcccccccccccceecccCCccccccCCC
Confidence 789999999985 499999999999 88887 579998876542 1 368999999998776432
Q ss_pred -------c--cCCCeEEEEecCCCCCCcceEEeccCCCC----CceeeeeecCCCCCeeEEEEeeeeEecCeeeecCCCc
Q 011045 295 -------Q--IKATSLAYCLVDRDSPASGVLEFNSARGG----DAVTAPLIRNKKVDTFYYVGLTGFSVGGQAVQIPPSL 361 (495)
Q Consensus 295 -------Q--l~~~~FS~~L~~~~~~~~g~L~fGg~d~~----~~~~tpl~~~~~~~~~y~V~l~gIsVgg~~~~i~~~~ 361 (495)
| +..++||+||++.+ ...|.|+|||+|+. ++.|+|+.. ..+|.|.++ +.+|+...
T Consensus 263 ~~~~L~~qg~I~~~vFS~~L~~~~-~~~G~L~fGGiD~~ky~G~l~y~pl~~----~~~W~V~l~-~~vg~~~~------ 330 (453)
T PTZ00147 263 YVVELKNQNKIEQAVFTFYLPPED-KHKGYLTIGGIEERFYEGPLTYEKLNH----DLYWQVDLD-VHFGNVSS------ 330 (453)
T ss_pred HHHHHHHcCCCCccEEEEEecCCC-CCCeEEEECCcChhhcCCceEEEEcCC----CceEEEEEE-EEECCEec------
Confidence 2 44789999997543 34799999999975 899999964 479999998 57776421
Q ss_pred cccccCCCCcEEEccCccceeecHHHHHHHHHHHHHhhcCCCCCCCCcccccccccCCCcccccceEEEEEcCCcEEEeC
Q 011045 362 FEMDEAGDGGIIVDCGTAITRLQTQAYNSLRDSFVRLAGNLKPTSGVALFDTCYDFSGLRSVRVPTVSLHFGAGKALDLP 441 (495)
Q Consensus 362 ~~~~~~~~~~~iiDSGTt~t~Lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~ltf~f~gg~~~~lp 441 (495)
....+||||||+++++|++++++|.+++++.. .+.. + .+...|+. ..+|+|+|+| +|+.++|+
T Consensus 331 ------~~~~aIiDSGTsli~lP~~~~~ai~~~l~~~~--~~~~-~-~y~~~C~~------~~lP~~~f~f-~g~~~~L~ 393 (453)
T PTZ00147 331 ------EKANVIVDSGTSVITVPTEFLNKFVESLDVFK--VPFL-P-LYVTTCNN------TKLPTLEFRS-PNKVYTLE 393 (453)
T ss_pred ------CceeEEECCCCchhcCCHHHHHHHHHHhCCee--cCCC-C-eEEEeCCC------CCCCeEEEEE-CCEEEEEC
Confidence 23569999999999999999999999986431 1111 1 12345653 4689999999 79999999
Q ss_pred CCCceEEecC-CCcEEE-EEEecC--CCceeecHHhhcceEEEEeCCCCEEEEeeCC
Q 011045 442 AKNYLIPVDS-AGTFCF-AFAPTS--SALSIIGNVQQQGTRVSFDLANNRVGFTPNK 494 (495)
Q Consensus 442 ~~~y~~~~~~-~g~~Cl-~~~~~~--~~~~IlG~~fl~~~yvvfD~~~~rIGFa~~~ 494 (495)
|++|+.+... ....|+ +|++.+ .+.||||+.|||++|+|||++++|||||+++
T Consensus 394 p~~yi~~~~~~~~~~C~~~i~~~~~~~~~~ILGd~FLr~~YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 394 PEYYLQPIEDIGSALCMLNIIPIDLEKNTFILGDPFMRKYFTVFDYDNHTVGFALAK 450 (453)
T ss_pred HHHheeccccCCCcEEEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEec
Confidence 9999986443 235797 787752 3579999999999999999999999999875
No 17
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=8e-50 Score=395.31 Aligned_cols=255 Identities=48% Similarity=0.920 Sum_probs=223.8
Q ss_pred eEEEEEEeCCCCcEEEEEEecCCCCeeEeCCCCCCccCCCCCccCCCCCCcccCCCCCCccccCCCCCCcCCCCcceeee
Q 011045 158 EYFSRIGVGTPPRQFSMVLDTGSDINWLQCRPCTECYQQSDPIFDPKTSSSYSPLPCAAPQCKSLDVSACRANRCLYQVA 237 (495)
Q Consensus 158 ~Y~~~i~IGTP~q~~~livDTGS~~~WV~c~~C~~C~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~~~C~~~~c~y~~~ 237 (495)
+|+++|.||||+|++.|+|||||+++||+| |.|.+.
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~--------------------------------------------~~~~~~ 36 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC--------------------------------------------CSYEYS 36 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC--------------------------------------------CceEeE
Confidence 699999999999999999999999999986 257899
Q ss_pred cCCCceEEEEEEEEEEEECCCc--cccceEEeEEecCCCCc-cCcceeEeccCCCCCcccccCCC--eEEEEecCCC-CC
Q 011045 238 YGDGSFTVGDLVTETVSFGNSG--SVKGIALGCGHDNEGLF-VGSAGLLGLGGGMLSLTKQIKAT--SLAYCLVDRD-SP 311 (495)
Q Consensus 238 Ygdgs~~~G~~~~Dtlt~g~~~--~v~~~~fG~~~~~~g~~-~~~~GIlGLg~~~~S~~sQl~~~--~FS~~L~~~~-~~ 311 (495)
|+||+...|.+++|+++|+ +. .++++.|||+.+..+.. ...+||||||+..+|++.|+... +||+||.+.. ..
T Consensus 37 Y~dg~~~~G~~~~D~v~~g-~~~~~~~~~~Fg~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~~~Fs~~l~~~~~~~ 115 (265)
T cd05476 37 YGDGSSTSGVLATETFTFG-DSSVSVPNVAFGCGTDNEGGSFGGADGILGLGRGPLSLVSQLGSTGNKFSYCLVPHDDTG 115 (265)
T ss_pred eCCCceeeeeEEEEEEEec-CCCCccCCEEEEecccccCCccCCCCEEEECCCCcccHHHHhhcccCeeEEEccCCCCCC
Confidence 9999888899999999999 66 89999999999887622 56899999999999999999855 9999997642 23
Q ss_pred CcceEEeccCCC---CCceeeeeecCCCCCeeEEEEeeeeEecCeeeecCCCccccccCCCCcEEEccCccceeecHHHH
Q 011045 312 ASGVLEFNSARG---GDAVTAPLIRNKKVDTFYYVGLTGFSVGGQAVQIPPSLFEMDEAGDGGIIVDCGTAITRLQTQAY 388 (495)
Q Consensus 312 ~~g~L~fGg~d~---~~~~~tpl~~~~~~~~~y~V~l~gIsVgg~~~~i~~~~~~~~~~~~~~~iiDSGTt~t~Lp~~~~ 388 (495)
..|+|+||++|+ +++.|+|++.++....+|.|+|++|+|+++.+.+++..+.........+||||||++++||+++|
T Consensus 116 ~~G~l~fGg~d~~~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGTs~~~lp~~~~ 195 (265)
T cd05476 116 GSSPLILGDAADLGGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTLTYLPDPAY 195 (265)
T ss_pred CCCeEEECCcccccCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCCcceEcCcccc
Confidence 479999999998 48999999987545689999999999999998876655544445567899999999999999887
Q ss_pred HHHHHHHHHhhcCCCCCCCCcccccccccCCCcccccceEEEEEcCCcEEEeCCCCceEEecCCCcEEEEEEec-CCCce
Q 011045 389 NSLRDSFVRLAGNLKPTSGVALFDTCYDFSGLRSVRVPTVSLHFGAGKALDLPAKNYLIPVDSAGTFCFAFAPT-SSALS 467 (495)
Q Consensus 389 ~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~ltf~f~gg~~~~lp~~~y~~~~~~~g~~Cl~~~~~-~~~~~ 467 (495)
|+|+|+|.+|..+.+++++|+++.. .+..|+++... ..+.|
T Consensus 196 -------------------------------------P~i~~~f~~~~~~~i~~~~y~~~~~-~~~~C~~~~~~~~~~~~ 237 (265)
T cd05476 196 -------------------------------------PDLTLHFDGGADLELPPENYFVDVG-EGVVCLAILSSSSGGVS 237 (265)
T ss_pred -------------------------------------CCEEEEECCCCEEEeCcccEEEECC-CCCEEEEEecCCCCCcE
Confidence 7899999558999999999999654 46799988876 56789
Q ss_pred eecHHhhcceEEEEeCCCCEEEEeeCCC
Q 011045 468 IIGNVQQQGTRVSFDLANNRVGFTPNKC 495 (495)
Q Consensus 468 IlG~~fl~~~yvvfD~~~~rIGFa~~~C 495 (495)
|||+.|||++|++||++++|||||+++|
T Consensus 238 ilG~~fl~~~~~vFD~~~~~iGfa~~~C 265 (265)
T cd05476 238 ILGNIQQQNFLVEYDLENSRLGFAPADC 265 (265)
T ss_pred EEChhhcccEEEEEECCCCEEeeecCCC
Confidence 9999999999999999999999999999
No 18
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=6.9e-50 Score=397.50 Aligned_cols=251 Identities=34% Similarity=0.688 Sum_probs=212.5
Q ss_pred eeEEEEEEeCCCCcEEEEEEecCCCCeeEeC-CCCCCccCCCCCccCCCCCCcccCCCCCCccccCCCCCCcCCCCccee
Q 011045 157 GEYFSRIGVGTPPRQFSMVLDTGSDINWLQC-RPCTECYQQSDPIFDPKTSSSYSPLPCAAPQCKSLDVSACRANRCLYQ 235 (495)
Q Consensus 157 g~Y~~~i~IGTP~q~~~livDTGS~~~WV~c-~~C~~C~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~~~C~~~~c~y~ 235 (495)
|+|+++|.||||+|++.|++||||+++||+| .+|..| . |.|+
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~~c-------------------~------------------c~~~ 43 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCTGC-------------------Q------------------CDYE 43 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCCCC-------------------c------------------CccE
Confidence 5799999999999999999999999999999 467666 1 7899
Q ss_pred eecCCCceEEEEEEEEEEEECC---CccccceEEeEEecCCCCc----cCcceeEeccCCCCCcccccC-----CCeEEE
Q 011045 236 VAYGDGSFTVGDLVTETVSFGN---SGSVKGIALGCGHDNEGLF----VGSAGLLGLGGGMLSLTKQIK-----ATSLAY 303 (495)
Q Consensus 236 ~~Ygdgs~~~G~~~~Dtlt~g~---~~~v~~~~fG~~~~~~g~~----~~~~GIlGLg~~~~S~~sQl~-----~~~FS~ 303 (495)
+.|+|++.+.|.+++|+|+|+. +..++++.|||++++.+.+ ...+||||||++++++++|+. +++||+
T Consensus 44 i~Ygd~~~~~G~~~~D~v~~~~~~~~~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ql~~~~~i~~~Fs~ 123 (273)
T cd05475 44 IEYADGGSSMGVLVTDIFSLKLTNGSRAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKISLPSQLASQGIIKNVIGH 123 (273)
T ss_pred eEeCCCCceEEEEEEEEEEEeecCCCcccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCCHHHHHHhcCCcCceEEE
Confidence 9999888888999999999962 3577899999998876543 368999999999999999876 468999
Q ss_pred EecCCCCCCcceEEeccCCCC--CceeeeeecCCCCCeeEEEEeeeeEecCeeeecCCCccccccCCCCcEEEccCccce
Q 011045 304 CLVDRDSPASGVLEFNSARGG--DAVTAPLIRNKKVDTFYYVGLTGFSVGGQAVQIPPSLFEMDEAGDGGIIVDCGTAIT 381 (495)
Q Consensus 304 ~L~~~~~~~~g~L~fGg~d~~--~~~~tpl~~~~~~~~~y~V~l~gIsVgg~~~~i~~~~~~~~~~~~~~~iiDSGTt~t 381 (495)
||++ ...|.|+||+.... ++.|+|+..++ ...+|.|++.+|+||++.+. ....++||||||+++
T Consensus 124 ~l~~---~~~g~l~~G~~~~~~g~i~ytpl~~~~-~~~~y~v~l~~i~vg~~~~~----------~~~~~~ivDTGTt~t 189 (273)
T cd05475 124 CLSS---NGGGFLFFGDDLVPSSGVTWTPMRRES-QKKHYSPGPASLLFNGQPTG----------GKGLEVVFDSGSSYT 189 (273)
T ss_pred EccC---CCCeEEEECCCCCCCCCeeecccccCC-CCCeEEEeEeEEEECCEECc----------CCCceEEEECCCceE
Confidence 9975 23689999965432 79999998764 24799999999999998532 234679999999999
Q ss_pred eecHHHHHHHHHHHHHhhcCCCCCCCCcccccccccCCCcccccceEEEEEcCC---cEEEeCCCCceEEecCCCcEEEE
Q 011045 382 RLQTQAYNSLRDSFVRLAGNLKPTSGVALFDTCYDFSGLRSVRVPTVSLHFGAG---KALDLPAKNYLIPVDSAGTFCFA 458 (495)
Q Consensus 382 ~Lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~ltf~f~gg---~~~~lp~~~y~~~~~~~g~~Cl~ 458 (495)
+||+++| +|+|+|+|.++ ++++||+++|+++.. ++..|++
T Consensus 190 ~lp~~~y------------------------------------~p~i~~~f~~~~~~~~~~l~~~~y~~~~~-~~~~Cl~ 232 (273)
T cd05475 190 YFNAQAY------------------------------------FKPLTLKFGKGWRTRLLEIPPENYLIISE-KGNVCLG 232 (273)
T ss_pred EcCCccc------------------------------------cccEEEEECCCCceeEEEeCCCceEEEcC-CCCEEEE
Confidence 9999876 68899999543 799999999999755 4678998
Q ss_pred EEecC----CCceeecHHhhcceEEEEeCCCCEEEEeeCCC
Q 011045 459 FAPTS----SALSIIGNVQQQGTRVSFDLANNRVGFTPNKC 495 (495)
Q Consensus 459 ~~~~~----~~~~IlG~~fl~~~yvvfD~~~~rIGFa~~~C 495 (495)
+.... .+.||||+.|||++|++||++++|||||+++|
T Consensus 233 ~~~~~~~~~~~~~ilG~~~l~~~~~vfD~~~~riGfa~~~C 273 (273)
T cd05475 233 ILNGSEIGLGNTNIIGDISMQGLMVIYDNEKQQIGWVRSDC 273 (273)
T ss_pred EecCCCcCCCceEEECceEEEeeEEEEECcCCEeCcccCCC
Confidence 76531 34799999999999999999999999999999
No 19
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=1.3e-48 Score=410.01 Aligned_cols=298 Identities=21% Similarity=0.348 Sum_probs=237.5
Q ss_pred eeeccccCCCCCceeEEEEEEeCCCCcEEEEEEecCCCCeeEeCCCCCCccCCCCCccCCCCCCcccCCCCCCccccCCC
Q 011045 144 FSTPVVSGASQGSGEYFSRIGVGTPPRQFSMVLDTGSDINWLQCRPCTECYQQSDPIFDPKTSSSYSPLPCAAPQCKSLD 223 (495)
Q Consensus 144 ~~~p~~~~~~~~~g~Y~~~i~IGTP~q~~~livDTGS~~~WV~c~~C~~C~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~ 223 (495)
-..|+..- .+.+|+++|.||||+|++.|++||||+++||+|..|..+.|+.++.|||++|+||+..+
T Consensus 127 ~~~~l~d~---~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~~~~C~~~~~yd~s~SsT~~~~~---------- 193 (450)
T PTZ00013 127 DVIELDDV---ANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCDSIGCSIKNLYDSSKSKSYEKDG---------- 193 (450)
T ss_pred Cceeeecc---CCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccCCccccccCCCccCccCcccccCC----------
Confidence 34565443 35789999999999999999999999999999999986555577899999999999877
Q ss_pred CCCcCCCCcceeeecCCCceEEEEEEEEEEEECCCccccceEEeEEecCCCC---c--cCcceeEeccCCCCCcc-----
Q 011045 224 VSACRANRCLYQVAYGDGSFTVGDLVTETVSFGNSGSVKGIALGCGHDNEGL---F--VGSAGLLGLGGGMLSLT----- 293 (495)
Q Consensus 224 ~~~C~~~~c~y~~~Ygdgs~~~G~~~~Dtlt~g~~~~v~~~~fG~~~~~~g~---~--~~~~GIlGLg~~~~S~~----- 293 (495)
|.|.+.||+|++ .|.+++|+|+|+ +..++ ..||++.+..+. + ..++||||||++.++..
T Consensus 194 --------~~~~i~YG~Gsv-~G~~~~Dtv~iG-~~~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~p~ 262 (450)
T PTZ00013 194 --------TKVDITYGSGTV-KGFFSKDLVTLG-HLSMP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIGSIDPI 262 (450)
T ss_pred --------cEEEEEECCceE-EEEEEEEEEEEC-CEEEc-cEEEEEEeccccccceecccccceecccCCccccccCCCH
Confidence 789999999985 599999999999 88877 578888765421 2 36799999999877542
Q ss_pred -cc------cCCCeEEEEecCCCCCCcceEEeccCCCC----CceeeeeecCCCCCeeEEEEeeeeEecCeeeecCCCcc
Q 011045 294 -KQ------IKATSLAYCLVDRDSPASGVLEFNSARGG----DAVTAPLIRNKKVDTFYYVGLTGFSVGGQAVQIPPSLF 362 (495)
Q Consensus 294 -sQ------l~~~~FS~~L~~~~~~~~g~L~fGg~d~~----~~~~tpl~~~~~~~~~y~V~l~gIsVgg~~~~i~~~~~ 362 (495)
.| +..++||+||++.+ ...|.|+|||+|++ ++.|+|+.. ..+|.|.++ +.+|....
T Consensus 263 ~~~L~~qg~I~~~vFS~~L~~~~-~~~G~L~fGGiD~~~y~G~L~y~pv~~----~~yW~I~l~-v~~G~~~~------- 329 (450)
T PTZ00013 263 VVELKNQNKIDNALFTFYLPVHD-VHAGYLTIGGIEEKFYEGNITYEKLNH----DLYWQIDLD-VHFGKQTM------- 329 (450)
T ss_pred HHHHHhccCcCCcEEEEEecCCC-CCCCEEEECCcCccccccceEEEEcCc----CceEEEEEE-EEECceec-------
Confidence 22 44789999997543 34799999999975 899999964 479999998 66664332
Q ss_pred ccccCCCCcEEEccCccceeecHHHHHHHHHHHHHhhcCCCCCCCCcccccccccCCCcccccceEEEEEcCCcEEEeCC
Q 011045 363 EMDEAGDGGIIVDCGTAITRLQTQAYNSLRDSFVRLAGNLKPTSGVALFDTCYDFSGLRSVRVPTVSLHFGAGKALDLPA 442 (495)
Q Consensus 363 ~~~~~~~~~~iiDSGTt~t~Lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~ltf~f~gg~~~~lp~ 442 (495)
....+||||||+++++|+++++++.++++... .+ ..+ .+...|+. ..+|+|+|+| +|..++|+|
T Consensus 330 -----~~~~aIlDSGTSli~lP~~~~~~i~~~l~~~~--~~-~~~-~y~~~C~~------~~lP~i~F~~-~g~~~~L~p 393 (450)
T PTZ00013 330 -----QKANVIVDSGTTTITAPSEFLNKFFANLNVIK--VP-FLP-FYVTTCDN------KEMPTLEFKS-ANNTYTLEP 393 (450)
T ss_pred -----cccceEECCCCccccCCHHHHHHHHHHhCCee--cC-CCC-eEEeecCC------CCCCeEEEEE-CCEEEEECH
Confidence 13568999999999999999999999885431 11 111 12334642 4689999999 789999999
Q ss_pred CCceEEec-CCCcEEE-EEEec--CCCceeecHHhhcceEEEEeCCCCEEEEeeCC
Q 011045 443 KNYLIPVD-SAGTFCF-AFAPT--SSALSIIGNVQQQGTRVSFDLANNRVGFTPNK 494 (495)
Q Consensus 443 ~~y~~~~~-~~g~~Cl-~~~~~--~~~~~IlG~~fl~~~yvvfD~~~~rIGFa~~~ 494 (495)
++|+.+.. .++..|+ +|.+. ..+.||||++|||++|+|||++++|||||+++
T Consensus 394 ~~Yi~~~~~~~~~~C~~~i~~~~~~~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 394 EYYMNPLLDVDDTLCMITMLPVDIDDNTFILGDPFMRKYFTVFDYDKESVGFAIAK 449 (450)
T ss_pred HHheehhccCCCCeeEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEeC
Confidence 99997643 2346897 77765 34579999999999999999999999999975
No 20
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=2.6e-47 Score=379.98 Aligned_cols=258 Identities=26% Similarity=0.421 Sum_probs=216.7
Q ss_pred EEEEEEeCCCCcEEEEEEecCCCCeeEeCCCCCCccCCCCCccCCCCCCcccCCCCCCccccCCCCCCcCCCCcceeeec
Q 011045 159 YFSRIGVGTPPRQFSMVLDTGSDINWLQCRPCTECYQQSDPIFDPKTSSSYSPLPCAAPQCKSLDVSACRANRCLYQVAY 238 (495)
Q Consensus 159 Y~~~i~IGTP~q~~~livDTGS~~~WV~c~~C~~C~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~~~C~~~~c~y~~~Y 238 (495)
|+++|.||||+|++.|++||||+++||+|..|..|.++.++.|||++|+|++.... |.|.+.|
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~~~~~~~~~~y~~~~Sst~~~~~~-----------------~~~~i~Y 63 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETPAAQQGGHKLYDPSKSSTAKLLPG-----------------ATWSISY 63 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCCchhhccCCcCCCccCccceecCC-----------------cEEEEEe
Confidence 89999999999999999999999999999999999888888999999999986531 7899999
Q ss_pred CCCceEEEEEEEEEEEECCCccccceEEeEEecCCCC-c--cCcceeEeccCCCCCccc-------------ccCCCeEE
Q 011045 239 GDGSFTVGDLVTETVSFGNSGSVKGIALGCGHDNEGL-F--VGSAGLLGLGGGMLSLTK-------------QIKATSLA 302 (495)
Q Consensus 239 gdgs~~~G~~~~Dtlt~g~~~~v~~~~fG~~~~~~g~-~--~~~~GIlGLg~~~~S~~s-------------Ql~~~~FS 302 (495)
++|+...|.+++|+|+|+ +..++++.|||++...+. + ...+||||||+..++... |...+.||
T Consensus 64 ~~G~~~~G~~~~D~v~ig-~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~~~~~~Fs 142 (278)
T cd06097 64 GDGSSASGIVYTDTVSIG-GVEVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTFFENALSSLDAPLFT 142 (278)
T ss_pred CCCCeEEEEEEEEEEEEC-CEEECCeEEEEEeecCccccccccccceeeeccccccccccCCCCCHHHHHHHhccCceEE
Confidence 999877799999999999 889999999999987652 2 578999999998765432 22257999
Q ss_pred EEecCCCCCCcceEEeccCCCC----CceeeeeecCCCCCeeEEEEeeeeEecCeeeecCCCccccccCCCCcEEEccCc
Q 011045 303 YCLVDRDSPASGVLEFNSARGG----DAVTAPLIRNKKVDTFYYVGLTGFSVGGQAVQIPPSLFEMDEAGDGGIIVDCGT 378 (495)
Q Consensus 303 ~~L~~~~~~~~g~L~fGg~d~~----~~~~tpl~~~~~~~~~y~V~l~gIsVgg~~~~i~~~~~~~~~~~~~~~iiDSGT 378 (495)
+||.+ ...|.|+|||+|+. ++.|+|+..+ ..+|.|++++|+||++.... ..+..+||||||
T Consensus 143 ~~l~~---~~~G~l~fGg~D~~~~~g~l~~~pi~~~---~~~w~v~l~~i~v~~~~~~~---------~~~~~~iiDSGT 207 (278)
T cd06097 143 ADLRK---AAPGFYTFGYIDESKYKGEISWTPVDNS---SGFWQFTSTSYTVGGDAPWS---------RSGFSAIADTGT 207 (278)
T ss_pred EEecC---CCCcEEEEeccChHHcCCceEEEEccCC---CcEEEEEEeeEEECCcceee---------cCCceEEeecCC
Confidence 99974 23799999999974 8999999864 47999999999999984321 124679999999
Q ss_pred cceeecHHHHHHHHHHHHHhhcCCCCCCCCcccccccccCCCcccccceEEEEEcCCcEEEeCCCCceEEecCCCcEEEE
Q 011045 379 AITRLQTQAYNSLRDSFVRLAGNLKPTSGVALFDTCYDFSGLRSVRVPTVSLHFGAGKALDLPAKNYLIPVDSAGTFCFA 458 (495)
Q Consensus 379 t~t~Lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~ltf~f~gg~~~~lp~~~y~~~~~~~g~~Cl~ 458 (495)
+++++|++++++|.+++.... +.... .+|.++|... +|+|+|+|
T Consensus 208 s~~~lP~~~~~~l~~~l~g~~--~~~~~------~~~~~~C~~~--~P~i~f~~-------------------------- 251 (278)
T cd06097 208 TLILLPDAIVEAYYSQVPGAY--YDSEY------GGWVFPCDTT--LPDLSFAV-------------------------- 251 (278)
T ss_pred chhcCCHHHHHHHHHhCcCCc--ccCCC------CEEEEECCCC--CCCEEEEE--------------------------
Confidence 999999999999999884221 11111 2456667653 89999999
Q ss_pred EEecCCCceeecHHhhcceEEEEeCCCCEEEEee
Q 011045 459 FAPTSSALSIIGNVQQQGTRVSFDLANNRVGFTP 492 (495)
Q Consensus 459 ~~~~~~~~~IlG~~fl~~~yvvfD~~~~rIGFa~ 492 (495)
.||||+.|||++|+|||++|+|||||+
T Consensus 252 -------~~ilGd~fl~~~y~vfD~~~~~ig~A~ 278 (278)
T cd06097 252 -------FSILGDVFLKAQYVVFDVGGPKLGFAP 278 (278)
T ss_pred -------EEEEcchhhCceeEEEcCCCceeeecC
Confidence 699999999999999999999999996
No 21
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=1.3e-45 Score=370.24 Aligned_cols=267 Identities=24% Similarity=0.470 Sum_probs=221.0
Q ss_pred eEEEEEEeCCCCcEEEEEEecCCCCeeEeCCCCCCccCCCCCccCCCCCCcccCCCCCCccccCCCCCCcCCCCcceeee
Q 011045 158 EYFSRIGVGTPPRQFSMVLDTGSDINWLQCRPCTECYQQSDPIFDPKTSSSYSPLPCAAPQCKSLDVSACRANRCLYQVA 237 (495)
Q Consensus 158 ~Y~~~i~IGTP~q~~~livDTGS~~~WV~c~~C~~C~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~~~C~~~~c~y~~~ 237 (495)
.|+++|.||||+|++.|++||||+++||+ .|++.
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~----------------------------------------------~~~~~ 35 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP----------------------------------------------DFSIS 35 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee----------------------------------------------eeEEE
Confidence 59999999999999999999999999997 26789
Q ss_pred cCCCceEEEEEEEEEEEECCCccccceEEeEEecCCCCccCcceeEeccCCCC-----------CcccccC------CCe
Q 011045 238 YGDGSFTVGDLVTETVSFGNSGSVKGIALGCGHDNEGLFVGSAGLLGLGGGML-----------SLTKQIK------ATS 300 (495)
Q Consensus 238 Ygdgs~~~G~~~~Dtlt~g~~~~v~~~~fG~~~~~~g~~~~~~GIlGLg~~~~-----------S~~sQl~------~~~ 300 (495)
|++|+...|.+++|+|+|+ +..++++.|||+++.. ..+||||||+.++ +++.||. .+.
T Consensus 36 Y~~g~~~~G~~~~D~v~~g-~~~~~~~~fg~~~~~~----~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~~~g~i~~~~ 110 (295)
T cd05474 36 YGDGTSASGTWGTDTVSIG-GATVKNLQFAVANSTS----SDVGVLGIGLPGNEATYGTGYTYPNFPIALKKQGLIKKNA 110 (295)
T ss_pred eccCCcEEEEEEEEEEEEC-CeEecceEEEEEecCC----CCcceeeECCCCCcccccCCCcCCCHHHHHHHCCcccceE
Confidence 9998777799999999999 8899999999999853 4799999999886 4555543 688
Q ss_pred EEEEecCCCCCCcceEEeccCCCC----CceeeeeecCCC--CCeeEEEEeeeeEecCeeeecCCCccccccCCCCcEEE
Q 011045 301 LAYCLVDRDSPASGVLEFNSARGG----DAVTAPLIRNKK--VDTFYYVGLTGFSVGGQAVQIPPSLFEMDEAGDGGIIV 374 (495)
Q Consensus 301 FS~~L~~~~~~~~g~L~fGg~d~~----~~~~tpl~~~~~--~~~~y~V~l~gIsVgg~~~~i~~~~~~~~~~~~~~~ii 374 (495)
||+||.+.. ...|.|+||++|+. ++.|+|+..++. ...+|.|.+++|+|+++.+..+. ....+.+||
T Consensus 111 Fsl~l~~~~-~~~g~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~------~~~~~~~ii 183 (295)
T cd05474 111 YSLYLNDLD-ASTGSILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTL------LSKNLPALL 183 (295)
T ss_pred EEEEeCCCC-CCceeEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCcccc------cCCCccEEE
Confidence 999997643 34799999999865 799999987642 23789999999999999875421 134578999
Q ss_pred ccCccceeecHHHHHHHHHHHHHhhcCCCCCCCCcccccccccCCCcccccceEEEEEcCCcEEEeCCCCceEEecC---
Q 011045 375 DCGTAITRLQTQAYNSLRDSFVRLAGNLKPTSGVALFDTCYDFSGLRSVRVPTVSLHFGAGKALDLPAKNYLIPVDS--- 451 (495)
Q Consensus 375 DSGTt~t~Lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~ltf~f~gg~~~~lp~~~y~~~~~~--- 451 (495)
||||++++||.++|++|.+++++.... ..+ .+...|+. ... |+|+|+| +|++++||+++|+++...
T Consensus 184 DSGt~~~~lP~~~~~~l~~~~~~~~~~---~~~-~~~~~C~~-----~~~-p~i~f~f-~g~~~~i~~~~~~~~~~~~~~ 252 (295)
T cd05474 184 DSGTTLTYLPSDIVDAIAKQLGATYDS---DEG-LYVVDCDA-----KDD-GSLTFNF-GGATISVPLSDLVLPASTDDG 252 (295)
T ss_pred CCCCccEeCCHHHHHHHHHHhCCEEcC---CCc-EEEEeCCC-----CCC-CEEEEEE-CCeEEEEEHHHhEeccccCCC
Confidence 999999999999999999999765431 112 12334554 344 9999999 789999999999997642
Q ss_pred CCcEEE-EEEecCCCceeecHHhhcceEEEEeCCCCEEEEeeC
Q 011045 452 AGTFCF-AFAPTSSALSIIGNVQQQGTRVSFDLANNRVGFTPN 493 (495)
Q Consensus 452 ~g~~Cl-~~~~~~~~~~IlG~~fl~~~yvvfD~~~~rIGFa~~ 493 (495)
.+..|+ +|.+.+.+.||||++|||++|++||.+++|||||++
T Consensus 253 ~~~~C~~~i~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 253 GDGACYLGIQPSTSDYNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred CCCCeEEEEEeCCCCcEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 356785 888875578999999999999999999999999986
No 22
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=7.6e-46 Score=374.74 Aligned_cols=290 Identities=28% Similarity=0.552 Sum_probs=244.5
Q ss_pred eEEEEEEeCCCCcEEEEEEecCCCCeeEeCCCCCCc-cCCCCCccCCCCCCcccCCCCCCccccCCCCCCcCCCCcceee
Q 011045 158 EYFSRIGVGTPPRQFSMVLDTGSDINWLQCRPCTEC-YQQSDPIFDPKTSSSYSPLPCAAPQCKSLDVSACRANRCLYQV 236 (495)
Q Consensus 158 ~Y~~~i~IGTP~q~~~livDTGS~~~WV~c~~C~~C-~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~~~C~~~~c~y~~ 236 (495)
+|+++|.||||+|++.|++||||+.+||++..|..| .+.....|++.+|+|++... +.+.+
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~~~~~~~~~y~~~~S~t~~~~~------------------~~~~~ 62 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSCSSCASSGFYNPSKSSTFSNQG------------------KPFSI 62 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSHTHHCTSC-BBGGGSTTEEEEE------------------EEEEE
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceeccccccccccccccccccccccccce------------------eeeee
Confidence 699999999999999999999999999999999987 66678899999999999876 78999
Q ss_pred ecCCCceEEEEEEEEEEEECCCccccceEEeEEecCCCC---ccCcceeEeccCCCC-------Ccccc------cCCCe
Q 011045 237 AYGDGSFTVGDLVTETVSFGNSGSVKGIALGCGHDNEGL---FVGSAGLLGLGGGML-------SLTKQ------IKATS 300 (495)
Q Consensus 237 ~Ygdgs~~~G~~~~Dtlt~g~~~~v~~~~fG~~~~~~g~---~~~~~GIlGLg~~~~-------S~~sQ------l~~~~ 300 (495)
.|++|+ ..|.+++|+++|+ +..+.++.||++....+. ....+||||||+... +++.| +..++
T Consensus 63 ~y~~g~-~~G~~~~D~v~ig-~~~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~g~i~~~~ 140 (317)
T PF00026_consen 63 SYGDGS-VSGNLVSDTVSIG-GLTIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQGLISSNV 140 (317)
T ss_dssp EETTEE-EEEEEEEEEEEET-TEEEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHTTSSSSSE
T ss_pred eccCcc-cccccccceEeee-eccccccceeccccccccccccccccccccccCCcccccccCCcceecchhhccccccc
Confidence 999999 6699999999999 899999999999996553 267899999997543 33333 44889
Q ss_pred EEEEecCCCCCCcceEEeccCCCC----CceeeeeecCCCCCeeEEEEeeeeEecCeeeecCCCccccccCCCCcEEEcc
Q 011045 301 LAYCLVDRDSPASGVLEFNSARGG----DAVTAPLIRNKKVDTFYYVGLTGFSVGGQAVQIPPSLFEMDEAGDGGIIVDC 376 (495)
Q Consensus 301 FS~~L~~~~~~~~g~L~fGg~d~~----~~~~tpl~~~~~~~~~y~V~l~gIsVgg~~~~i~~~~~~~~~~~~~~~iiDS 376 (495)
||++|.+.. ...|.|+||++|++ +++|+|+.. ..+|.|.+++|++++...... ....++|||
T Consensus 141 fsl~l~~~~-~~~g~l~~Gg~d~~~~~g~~~~~~~~~----~~~w~v~~~~i~i~~~~~~~~---------~~~~~~~Dt 206 (317)
T PF00026_consen 141 FSLYLNPSD-SQNGSLTFGGYDPSKYDGDLVWVPLVS----SGYWSVPLDSISIGGESVFSS---------SGQQAILDT 206 (317)
T ss_dssp EEEEEESTT-SSEEEEEESSEEGGGEESEEEEEEBSS----TTTTEEEEEEEEETTEEEEEE---------EEEEEEEET
T ss_pred cceeeeecc-cccchheeeccccccccCceeccCccc----ccccccccccccccccccccc---------cceeeeccc
Confidence 999998765 44799999999976 799999984 479999999999999833211 123489999
Q ss_pred CccceeecHHHHHHHHHHHHHhhcCCCCCCCCcccccccccCCCcccccceEEEEEcCCcEEEeCCCCceEEecCC-CcE
Q 011045 377 GTAITRLQTQAYNSLRDSFVRLAGNLKPTSGVALFDTCYDFSGLRSVRVPTVSLHFGAGKALDLPAKNYLIPVDSA-GTF 455 (495)
Q Consensus 377 GTt~t~Lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~ltf~f~gg~~~~lp~~~y~~~~~~~-g~~ 455 (495)
||++++||.+++++|.+++...... .+|.++|.....+|.|+|+| ++.+++||+++|+.+.... ...
T Consensus 207 gt~~i~lp~~~~~~i~~~l~~~~~~-----------~~~~~~c~~~~~~p~l~f~~-~~~~~~i~~~~~~~~~~~~~~~~ 274 (317)
T PF00026_consen 207 GTSYIYLPRSIFDAIIKALGGSYSD-----------GVYSVPCNSTDSLPDLTFTF-GGVTFTIPPSDYIFKIEDGNGGY 274 (317)
T ss_dssp TBSSEEEEHHHHHHHHHHHTTEEEC-----------SEEEEETTGGGGSEEEEEEE-TTEEEEEEHHHHEEEESSTTSSE
T ss_pred ccccccccchhhHHHHhhhcccccc-----------eeEEEecccccccceEEEee-CCEEEEecchHhcccccccccce
Confidence 9999999999999999999766432 24666777777899999999 7999999999999987742 348
Q ss_pred EE-EEEe----cCCCceeecHHhhcceEEEEeCCCCEEEEeeC
Q 011045 456 CF-AFAP----TSSALSIIGNVQQQGTRVSFDLANNRVGFTPN 493 (495)
Q Consensus 456 Cl-~~~~----~~~~~~IlG~~fl~~~yvvfD~~~~rIGFa~~ 493 (495)
|+ +|.. .....+|||.+|||++|++||.+++|||||+|
T Consensus 275 C~~~i~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 275 CYLGIQPMDSSDDSDDWILGSPFLRNYYVVFDYENNRIGFAQA 317 (317)
T ss_dssp EEESEEEESSTTSSSEEEEEHHHHTTEEEEEETTTTEEEEEEE
T ss_pred eEeeeecccccccCCceEecHHHhhceEEEEeCCCCEEEEecC
Confidence 97 7776 24567999999999999999999999999986
No 23
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=3.6e-44 Score=356.28 Aligned_cols=262 Identities=34% Similarity=0.649 Sum_probs=222.9
Q ss_pred EEEEEEeCCCCcEEEEEEecCCCCeeEeCCCCCCccCCCCCc--cCCCCCCcccCCCCCCccccCCCCCCcCCCCcceee
Q 011045 159 YFSRIGVGTPPRQFSMVLDTGSDINWLQCRPCTECYQQSDPI--FDPKTSSSYSPLPCAAPQCKSLDVSACRANRCLYQV 236 (495)
Q Consensus 159 Y~~~i~IGTP~q~~~livDTGS~~~WV~c~~C~~C~~~~~~~--f~p~~SsT~~~~~C~~~~C~~~~~~~C~~~~c~y~~ 236 (495)
|+++|.||||+|++.|++||||+++||+|..|..|.++.... |++..|+++.... |.|.+
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~~~~~~~~~~~~~~~~~s~~~~~~~------------------~~~~~ 62 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCTSCSCQKHPRFKYDSSKSSTYKDTG------------------CTFSI 62 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCCccccccCCCCccCccCCceeecCC------------------CEEEE
Confidence 789999999999999999999999999999999887666655 7888888777655 89999
Q ss_pred ecCCCceEEEEEEEEEEEECCCccccceEEeEEecCCCCc--cCcceeEeccCCC------CCcccccC------CCeEE
Q 011045 237 AYGDGSFTVGDLVTETVSFGNSGSVKGIALGCGHDNEGLF--VGSAGLLGLGGGM------LSLTKQIK------ATSLA 302 (495)
Q Consensus 237 ~Ygdgs~~~G~~~~Dtlt~g~~~~v~~~~fG~~~~~~g~~--~~~~GIlGLg~~~------~S~~sQl~------~~~FS 302 (495)
.|++|+.. |.+++|+++|+ +..++++.|||+++..+.+ ...+||||||+.. .+++.||. .++||
T Consensus 63 ~Y~~g~~~-g~~~~D~v~~~-~~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~i~~~~Fs 140 (283)
T cd05471 63 TYGDGSVT-GGLGTDTVTIG-GLTIPNQTFGCATSESGDFSSSGFDGILGLGFPSLSVDGVPSFFDQLKSQGLISSPVFS 140 (283)
T ss_pred EECCCeEE-EEEEEeEEEEC-CEEEeceEEEEEeccCCcccccccceEeecCCcccccccCCCHHHHHHHCCCCCCCEEE
Confidence 99998766 99999999999 8889999999999987633 5789999999998 67877755 68999
Q ss_pred EEecCCC-CCCcceEEeccCCCC----CceeeeeecCCCCCeeEEEEeeeeEecCeeeecCCCccccccCCCCcEEEccC
Q 011045 303 YCLVDRD-SPASGVLEFNSARGG----DAVTAPLIRNKKVDTFYYVGLTGFSVGGQAVQIPPSLFEMDEAGDGGIIVDCG 377 (495)
Q Consensus 303 ~~L~~~~-~~~~g~L~fGg~d~~----~~~~tpl~~~~~~~~~y~V~l~gIsVgg~~~~i~~~~~~~~~~~~~~~iiDSG 377 (495)
+||.+.. ....|.|+||++|+. ++.|+|++.+ ...+|.|.+++|.|++..... ......+|||||
T Consensus 141 ~~l~~~~~~~~~g~l~~Gg~d~~~~~~~~~~~p~~~~--~~~~~~v~l~~i~v~~~~~~~--------~~~~~~~iiDsG 210 (283)
T cd05471 141 FYLGRDGDGGNGGELTFGGIDPSKYTGDLTYTPVVSN--GPGYWQVPLDGISVGGKSVIS--------SSGGGGAIVDSG 210 (283)
T ss_pred EEEcCCCCCCCCCEEEEcccCccccCCceEEEecCCC--CCCEEEEEeCeEEECCceeee--------cCCCcEEEEecC
Confidence 9998642 234899999999974 8999999875 357999999999999975111 134567999999
Q ss_pred ccceeecHHHHHHHHHHHHHhhcCCCCCCCCcccccccccCCCcccccceEEEEEcCCcEEEeCCCCceEEecCCCcEEE
Q 011045 378 TAITRLQTQAYNSLRDSFVRLAGNLKPTSGVALFDTCYDFSGLRSVRVPTVSLHFGAGKALDLPAKNYLIPVDSAGTFCF 457 (495)
Q Consensus 378 Tt~t~Lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~ltf~f~gg~~~~lp~~~y~~~~~~~g~~Cl 457 (495)
|++++||+++|++|.+++.+.... ...|+...|.....+|+|+|+|
T Consensus 211 t~~~~lp~~~~~~l~~~~~~~~~~---------~~~~~~~~~~~~~~~p~i~f~f------------------------- 256 (283)
T cd05471 211 TSLIYLPSSVYDAILKALGAAVSS---------SDGGYGVDCSPCDTLPDITFTF------------------------- 256 (283)
T ss_pred CCCEeCCHHHHHHHHHHhCCcccc---------cCCcEEEeCcccCcCCCEEEEE-------------------------
Confidence 999999999999999999876432 2335666666678899999999
Q ss_pred EEEecCCCceeecHHhhcceEEEEeCCCCEEEEee
Q 011045 458 AFAPTSSALSIIGNVQQQGTRVSFDLANNRVGFTP 492 (495)
Q Consensus 458 ~~~~~~~~~~IlG~~fl~~~yvvfD~~~~rIGFa~ 492 (495)
.+|||++|||++|++||.++++||||+
T Consensus 257 --------~~ilG~~fl~~~y~vfD~~~~~igfa~ 283 (283)
T cd05471 257 --------LWILGDVFLRNYYTVFDLDNNRIGFAP 283 (283)
T ss_pred --------EEEccHhhhhheEEEEeCCCCEEeecC
Confidence 699999999999999999999999985
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.98 E-value=5.6e-32 Score=248.59 Aligned_cols=153 Identities=47% Similarity=0.983 Sum_probs=126.7
Q ss_pred EEEEEEeCCCCcEEEEEEecCCCCeeEeCCCCCCccCCCCCccCCCCCCcccCCCCCCccccCCCCC--Cc--CCCCcce
Q 011045 159 YFSRIGVGTPPRQFSMVLDTGSDINWLQCRPCTECYQQSDPIFDPKTSSSYSPLPCAAPQCKSLDVS--AC--RANRCLY 234 (495)
Q Consensus 159 Y~~~i~IGTP~q~~~livDTGS~~~WV~c~~C~~C~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~~--~C--~~~~c~y 234 (495)
|+++|.||||+|++.|+|||||+++|++| ..+.|+|.+|+||+.++|.+++|...... .| .++.|.|
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C---------~~~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~~~~~~~C~y 71 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQC---------PDPPFDPSKSSTYRPVPCSSPQCSSAPSFCPCCCCSNNSCPY 71 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET-------------STT-TTSSBEC-BTTSHHHHHCTSSBTCCTCESSEEEE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcC---------CCcccCCccCCcccccCCCCcchhhcccccccCCCCcCcccc
Confidence 89999999999999999999999999999 46899999999999999999999987643 33 3344999
Q ss_pred eeecCCCceEEEEEEEEEEEECCC----ccccceEEeEEecCCCCccCcceeEeccCCCCCccccc---CCCeEEEEecC
Q 011045 235 QVAYGDGSFTVGDLVTETVSFGNS----GSVKGIALGCGHDNEGLFVGSAGLLGLGGGMLSLTKQI---KATSLAYCLVD 307 (495)
Q Consensus 235 ~~~Ygdgs~~~G~~~~Dtlt~g~~----~~v~~~~fG~~~~~~g~~~~~~GIlGLg~~~~S~~sQl---~~~~FS~~L~~ 307 (495)
.+.|++++.+.|.+++|+|+++.. ..+.++.|||++...+.+..++||||||++++||++|| ..++|||||++
T Consensus 72 ~~~y~~~s~~~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~g~~~~~~GilGLg~~~~Sl~sQl~~~~~~~FSyCL~~ 151 (164)
T PF14543_consen 72 SQSYGDGSSSSGFLASDTLTFGSSSGGSNSVPDFIFGCATSNSGLFYGADGILGLGRGPLSLPSQLASSSGNKFSYCLPS 151 (164)
T ss_dssp EEEETTTEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEE-GGGTSSTTEEEEEE-SSSTTSHHHHHHHH--SEEEEEB-S
T ss_pred eeecCCCccccCceEEEEEEecCCCCCCceeeeEEEEeeeccccCCcCCCcccccCCCcccHHHHHHHhcCCeEEEECCC
Confidence 999999999999999999999832 46889999999999998889999999999999999999 79999999988
Q ss_pred CCCCCcceEEecc
Q 011045 308 RDSPASGVLEFNS 320 (495)
Q Consensus 308 ~~~~~~g~L~fGg 320 (495)
......|.|+||+
T Consensus 152 ~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 152 SSPSSSGFLSFGD 164 (164)
T ss_dssp -SSSSEEEEEECS
T ss_pred CCCCCCEEEEeCc
Confidence 4445589999995
No 25
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.96 E-value=7.6e-29 Score=227.23 Aligned_cols=151 Identities=44% Similarity=0.855 Sum_probs=124.9
Q ss_pred eEEEEeeeeEecCeeeecCCCccccccCCCCcEEEccCccceeecHHHHHHHHHHHHHhhcCCC--C-CCCCcccccccc
Q 011045 340 FYYVGLTGFSVGGQAVQIPPSLFEMDEAGDGGIIVDCGTAITRLQTQAYNSLRDSFVRLAGNLK--P-TSGVALFDTCYD 416 (495)
Q Consensus 340 ~y~V~l~gIsVgg~~~~i~~~~~~~~~~~~~~~iiDSGTt~t~Lp~~~~~~l~~~l~~~~~~~~--~-~~~~~~~~~C~~ 416 (495)
+|+|+|++|+||++++.+++..|+. .++.+++||||||++|+||+++|++|+++|.+.+.... + ......++.||+
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~-~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy~ 79 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQL-SDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCYN 79 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCE-TTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EEE
T ss_pred CccEEEEEEEECCEEecCChHHhhc-cCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCceee
Confidence 5999999999999999999999988 78899999999999999999999999999999887542 2 234557889999
Q ss_pred cCC----CcccccceEEEEEcCCcEEEeCCCCceEEecCCCcEEEEEEec---CCCceeecHHhhcceEEEEeCCCCEEE
Q 011045 417 FSG----LRSVRVPTVSLHFGAGKALDLPAKNYLIPVDSAGTFCFAFAPT---SSALSIIGNVQQQGTRVSFDLANNRVG 489 (495)
Q Consensus 417 ~~~----~~~~~~P~ltf~f~gg~~~~lp~~~y~~~~~~~g~~Cl~~~~~---~~~~~IlG~~fl~~~yvvfD~~~~rIG 489 (495)
.+. .....+|+|+|||.||++++|++++|++..+ ++.+|++|.++ ..+.+|||+.+|++++++||++++|||
T Consensus 80 ~~~~~~~~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~~-~~~~Cla~~~~~~~~~~~~viG~~~~~~~~v~fDl~~~~ig 158 (161)
T PF14541_consen 80 LSSFGVNRDWAKFPTITLHFEGGADLTLPPENYFVQVS-PGVFCLAFVPSDADDDGVSVIGNFQQQNYHVVFDLENGRIG 158 (161)
T ss_dssp GGCS-EETTEESS--EEEEETTSEEEEE-HHHHEEEEC-TTEEEESEEEETSTTSSSEEE-HHHCCTEEEEEETTTTEEE
T ss_pred ccccccccccccCCeEEEEEeCCcceeeeccceeeecc-CCCEEEEEEccCCCCCCcEEECHHHhcCcEEEEECCCCEEE
Confidence 887 3557899999999889999999999999887 58999999987 567899999999999999999999999
Q ss_pred Eee
Q 011045 490 FTP 492 (495)
Q Consensus 490 Fa~ 492 (495)
|+|
T Consensus 159 F~~ 161 (161)
T PF14541_consen 159 FAP 161 (161)
T ss_dssp EEE
T ss_pred EeC
Confidence 997
No 26
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.90 E-value=1.7e-23 Score=178.74 Aligned_cols=105 Identities=42% Similarity=0.756 Sum_probs=95.7
Q ss_pred EEEEeCCCCcEEEEEEecCCCCeeEeCCCCCCccCCCCCcc-CCCCCCcccCCCCCCccccCCCCCCcCCCCcceeeecC
Q 011045 161 SRIGVGTPPRQFSMVLDTGSDINWLQCRPCTECYQQSDPIF-DPKTSSSYSPLPCAAPQCKSLDVSACRANRCLYQVAYG 239 (495)
Q Consensus 161 ~~i~IGTP~q~~~livDTGS~~~WV~c~~C~~C~~~~~~~f-~p~~SsT~~~~~C~~~~C~~~~~~~C~~~~c~y~~~Yg 239 (495)
++|.||||+|++.|+|||||+++||+|..|..|.++..+.| +|+.|++++... |.|.+.|+
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~~~~~~~~~~~~~~~~sst~~~~~------------------~~~~~~Y~ 62 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQSLAIYSHSSYDDPSASSTYSDNG------------------CTFSITYG 62 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCCCcccccccccCCcCCCCCCCCCC------------------cEEEEEeC
Confidence 47999999999999999999999999999998887777777 999999999877 89999999
Q ss_pred CCceEEEEEEEEEEEECCCccccceEEeEEecCCCCc---cCcceeEec
Q 011045 240 DGSFTVGDLVTETVSFGNSGSVKGIALGCGHDNEGLF---VGSAGLLGL 285 (495)
Q Consensus 240 dgs~~~G~~~~Dtlt~g~~~~v~~~~fG~~~~~~g~~---~~~~GIlGL 285 (495)
+|+.. |.+++|+|+|+ +..++++.|||++...+.+ ...+|||||
T Consensus 63 ~g~~~-g~~~~D~v~ig-~~~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 63 TGSLS-GGLSTDTVSIG-DIEVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred CCeEE-EEEEEEEEEEC-CEEECCEEEEEEEecCCccccccccccccCC
Confidence 99866 99999999999 8889999999999998754 568999998
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=97.96 E-value=2.6e-05 Score=64.06 Aligned_cols=94 Identities=14% Similarity=0.217 Sum_probs=68.6
Q ss_pred eeEEEEEEeCCCCcEEEEEEecCCCCeeEeCCCCCCccCCCCCccCCCCCCcccCCCCCCccccCCCCCCcCCCCcceee
Q 011045 157 GEYFSRIGVGTPPRQFSMVLDTGSDINWLQCRPCTECYQQSDPIFDPKTSSSYSPLPCAAPQCKSLDVSACRANRCLYQV 236 (495)
Q Consensus 157 g~Y~~~i~IGTP~q~~~livDTGS~~~WV~c~~C~~C~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~~~C~~~~c~y~~ 236 (495)
+.|++++.|| .+++.+++|||++.+|+.-.....+.. .... . ....+
T Consensus 1 ~~~~v~v~i~--~~~~~~llDTGa~~s~i~~~~~~~l~~------------~~~~-~------------------~~~~~ 47 (96)
T cd05483 1 GHFVVPVTIN--GQPVRFLLDTGASTTVISEELAERLGL------------PLTL-G------------------GKVTV 47 (96)
T ss_pred CcEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHHHcCC------------CccC-C------------------CcEEE
Confidence 3589999999 899999999999999996542222210 0000 0 34567
Q ss_pred ecCCCceEEEEEEEEEEEECCCccccceEEeEEecCCCCccCcceeEeccC
Q 011045 237 AYGDGSFTVGDLVTETVSFGNSGSVKGIALGCGHDNEGLFVGSAGLLGLGG 287 (495)
Q Consensus 237 ~Ygdgs~~~G~~~~Dtlt~g~~~~v~~~~fG~~~~~~g~~~~~~GIlGLg~ 287 (495)
.+.+|.........+.++++ +..++++.+........ ..+||||+.+
T Consensus 48 ~~~~G~~~~~~~~~~~i~ig-~~~~~~~~~~v~d~~~~---~~~gIlG~d~ 94 (96)
T cd05483 48 QTANGRVRAARVRLDSLQIG-GITLRNVPAVVLPGDAL---GVDGLLGMDF 94 (96)
T ss_pred EecCCCccceEEEcceEEEC-CcEEeccEEEEeCCccc---CCceEeChHH
Confidence 77788776677779999999 88888888887766543 5799999863
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=96.51 E-value=0.018 Score=50.12 Aligned_cols=95 Identities=19% Similarity=0.256 Sum_probs=63.9
Q ss_pred ceeEEEEEEeCCCCcEEEEEEecCCCCeeEeCCCCCCccCCCCCccCCCCCCcccCCCCCCccccCCCCCCcCCCCccee
Q 011045 156 SGEYFSRIGVGTPPRQFSMVLDTGSDINWLQCRPCTECYQQSDPIFDPKTSSSYSPLPCAAPQCKSLDVSACRANRCLYQ 235 (495)
Q Consensus 156 ~g~Y~~~i~IGTP~q~~~livDTGS~~~WV~c~~C~~C~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~~~C~~~~c~y~ 235 (495)
+|.|++++.|. .+++.+++|||++.+-+...--.... .++.. .. ....
T Consensus 9 ~g~~~v~~~In--G~~~~flVDTGAs~t~is~~~A~~Lg------l~~~~------~~------------------~~~~ 56 (121)
T TIGR02281 9 DGHFYATGRVN--GRNVRFLVDTGATSVALNEEDAQRLG------LDLNR------LG------------------YTVT 56 (121)
T ss_pred CCeEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHHHcC------CCccc------CC------------------ceEE
Confidence 69999999998 78999999999999988543211110 11110 00 1223
Q ss_pred eecCCCceEEEEEEEEEEEECCCccccceEEeEEecCCCCccCcceeEeccC
Q 011045 236 VAYGDGSFTVGDLVTETVSFGNSGSVKGIALGCGHDNEGLFVGSAGLLGLGG 287 (495)
Q Consensus 236 ~~Ygdgs~~~G~~~~Dtlt~g~~~~v~~~~fG~~~~~~g~~~~~~GIlGLg~ 287 (495)
+.=..|......+.-|.+.+| +..+.|+.+.+..... ..+|+||+.+
T Consensus 57 ~~ta~G~~~~~~~~l~~l~iG-~~~~~nv~~~v~~~~~----~~~~LLGm~f 103 (121)
T TIGR02281 57 VSTANGQIKAARVTLDRVAIG-GIVVNDVDAMVAEGGA----LSESLLGMSF 103 (121)
T ss_pred EEeCCCcEEEEEEEeCEEEEC-CEEEeCcEEEEeCCCc----CCceEcCHHH
Confidence 333456555566789999999 8999999987774332 1379999874
No 29
>PF13650 Asp_protease_2: Aspartyl protease
Probab=96.07 E-value=0.049 Score=43.77 Aligned_cols=89 Identities=18% Similarity=0.252 Sum_probs=55.2
Q ss_pred EEEEeCCCCcEEEEEEecCCCCeeEeCCCCCCccCCCCCccCCCCCCcccCCCCCCccccCCCCCCcCCCCcceeeecCC
Q 011045 161 SRIGVGTPPRQFSMVLDTGSDINWLQCRPCTECYQQSDPIFDPKTSSSYSPLPCAAPQCKSLDVSACRANRCLYQVAYGD 240 (495)
Q Consensus 161 ~~i~IGTP~q~~~livDTGS~~~WV~c~~C~~C~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~~~C~~~~c~y~~~Ygd 240 (495)
+++.|+ .+++.+++|||++.+.+.-.-+.... ..+.. .. ....+.-.+
T Consensus 1 V~v~vn--g~~~~~liDTGa~~~~i~~~~~~~l~------~~~~~------~~------------------~~~~~~~~~ 48 (90)
T PF13650_consen 1 VPVKVN--GKPVRFLIDTGASISVISRSLAKKLG------LKPRP------KS------------------VPISVSGAG 48 (90)
T ss_pred CEEEEC--CEEEEEEEcCCCCcEEECHHHHHHcC------CCCcC------Cc------------------eeEEEEeCC
Confidence 356777 78999999999998888543221110 00000 00 123333344
Q ss_pred CceEEEEEEEEEEEECCCccccceEEeEEecCCCCccCcceeEecc
Q 011045 241 GSFTVGDLVTETVSFGNSGSVKGIALGCGHDNEGLFVGSAGLLGLG 286 (495)
Q Consensus 241 gs~~~G~~~~Dtlt~g~~~~v~~~~fG~~~~~~g~~~~~~GIlGLg 286 (495)
|.........+.++++ +..+.++.|-..... ...+||||+-
T Consensus 49 g~~~~~~~~~~~i~ig-~~~~~~~~~~v~~~~----~~~~~iLG~d 89 (90)
T PF13650_consen 49 GSVTVYRGRVDSITIG-GITLKNVPFLVVDLG----DPIDGILGMD 89 (90)
T ss_pred CCEEEEEEEEEEEEEC-CEEEEeEEEEEECCC----CCCEEEeCCc
Confidence 5555466677799999 888888887766622 2578999974
No 30
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=94.76 E-value=0.1 Score=45.43 Aligned_cols=27 Identities=19% Similarity=0.165 Sum_probs=23.8
Q ss_pred CCceeecHHhhcceEEEEeCCCCEEEE
Q 011045 464 SALSIIGNVQQQGTRVSFDLANNRVGF 490 (495)
Q Consensus 464 ~~~~IlG~~fl~~~yvvfD~~~~rIGF 490 (495)
....|||..||+.+-.+.|+.+++|-|
T Consensus 98 ~~d~ILG~d~L~~~~~~ID~~~~~i~~ 124 (124)
T cd05479 98 DVDFLIGLDMLKRHQCVIDLKENVLRI 124 (124)
T ss_pred CcCEEecHHHHHhCCeEEECCCCEEEC
Confidence 446899999999999999999998853
No 31
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=94.14 E-value=0.38 Score=41.81 Aligned_cols=92 Identities=14% Similarity=0.184 Sum_probs=58.4
Q ss_pred ceeEEEEEEeCCCCcEEEEEEecCCCCeeEeCCCCCCccCCCCCccCCCCCCcccCCCCCCccccCCCCCCcCCCCccee
Q 011045 156 SGEYFSRIGVGTPPRQFSMVLDTGSDINWLQCRPCTECYQQSDPIFDPKTSSSYSPLPCAAPQCKSLDVSACRANRCLYQ 235 (495)
Q Consensus 156 ~g~Y~~~i~IGTP~q~~~livDTGS~~~WV~c~~C~~C~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~~~C~~~~c~y~ 235 (495)
...+++++.|+ ++++.+++|||++.+++.-.-+..+.-+.. .. ..+.
T Consensus 14 ~~~~~v~~~In--g~~~~~LvDTGAs~s~Is~~~a~~lgl~~~------~~-------------------------~~~~ 60 (124)
T cd05479 14 VPMLYINVEIN--GVPVKAFVDSGAQMTIMSKACAEKCGLMRL------ID-------------------------KRFQ 60 (124)
T ss_pred eeEEEEEEEEC--CEEEEEEEeCCCceEEeCHHHHHHcCCccc------cC-------------------------cceE
Confidence 35789999999 899999999999999996543333321000 00 1122
Q ss_pred -eecC-CCceEEEEEEEEEEEECCCccccceEEeEEecCCCCccCcceeEeccC
Q 011045 236 -VAYG-DGSFTVGDLVTETVSFGNSGSVKGIALGCGHDNEGLFVGSAGLLGLGG 287 (495)
Q Consensus 236 -~~Yg-dgs~~~G~~~~Dtlt~g~~~~v~~~~fG~~~~~~g~~~~~~GIlGLg~ 287 (495)
...+ ++....|....+.+.++ +...+ +.|.+.... ..++|||+-+
T Consensus 61 ~~~~g~g~~~~~g~~~~~~l~i~-~~~~~-~~~~Vl~~~-----~~d~ILG~d~ 107 (124)
T cd05479 61 GIAKGVGTQKILGRIHLAQVKIG-NLFLP-CSFTVLEDD-----DVDFLIGLDM 107 (124)
T ss_pred EEEecCCCcEEEeEEEEEEEEEC-CEEee-eEEEEECCC-----CcCEEecHHH
Confidence 2233 23344577778889999 66654 666655332 4799999863
No 32
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=92.65 E-value=1.5 Score=44.97 Aligned_cols=51 Identities=25% Similarity=0.441 Sum_probs=33.7
Q ss_pred eecCCCceEEEEEEEEEEEECCCccccceEEeEEecC-----------CCC------ccCcceeEeccCC
Q 011045 236 VAYGDGSFTVGDLVTETVSFGNSGSVKGIALGCGHDN-----------EGL------FVGSAGLLGLGGG 288 (495)
Q Consensus 236 ~~Ygdgs~~~G~~~~Dtlt~g~~~~v~~~~fG~~~~~-----------~g~------~~~~~GIlGLg~~ 288 (495)
..|++|..+ |-+.+-.|+|+ +....++++-+..+. .+. ..++.||||+|.-
T Consensus 82 ~~F~sgytW-GsVr~AdV~ig-ge~A~~iPiQvI~D~~~~~~P~sC~~~g~~~~t~~~lgaNGILGIg~~ 149 (370)
T PF11925_consen 82 AQFASGYTW-GSVRTADVTIG-GETASSIPIQVIGDSAAPSVPSSCSNSGASMNTVADLGANGILGIGPF 149 (370)
T ss_pred hhccCcccc-cceEEEEEEEc-CeeccccCEEEEcCCCCCCCCchhhcCCCCCCCcccccCceEEeecCC
Confidence 456777777 99999999999 554444444444321 111 1578999999854
No 33
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=90.10 E-value=0.33 Score=39.59 Aligned_cols=28 Identities=25% Similarity=0.288 Sum_probs=25.0
Q ss_pred EEEEEEeCCCCcEEEEEEecCCCCeeEeCC
Q 011045 159 YFSRIGVGTPPRQFSMVLDTGSDINWLQCR 188 (495)
Q Consensus 159 Y~~~i~IGTP~q~~~livDTGS~~~WV~c~ 188 (495)
|++++.|+ ++++.+++||||+.+++.-+
T Consensus 1 ~~~~~~In--g~~i~~lvDTGA~~svis~~ 28 (91)
T cd05484 1 KTVTLLVN--GKPLKFQLDTGSAITVISEK 28 (91)
T ss_pred CEEEEEEC--CEEEEEEEcCCcceEEeCHH
Confidence 57889999 89999999999999999654
No 34
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=88.75 E-value=2 Score=36.38 Aligned_cols=24 Identities=17% Similarity=0.327 Sum_probs=21.1
Q ss_pred CceeecHHhhcceEEEEeCCCCEE
Q 011045 465 ALSIIGNVQQQGTRVSFDLANNRV 488 (495)
Q Consensus 465 ~~~IlG~~fl~~~yvvfD~~~~rI 488 (495)
+..+||..||+.+-++.|+.++++
T Consensus 84 ~~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 84 DEPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred CccEecHHHHhhCCEEEehhhCcC
Confidence 468999999999999999988753
No 35
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=87.45 E-value=1.7 Score=38.48 Aligned_cols=30 Identities=20% Similarity=0.142 Sum_probs=26.7
Q ss_pred CCceeecHHhhcceEEEEeCCCCEEEEeeC
Q 011045 464 SALSIIGNVQQQGTRVSFDLANNRVGFTPN 493 (495)
Q Consensus 464 ~~~~IlG~~fl~~~yvvfD~~~~rIGFa~~ 493 (495)
+-..|||..+|+.+...-|+.+++|-|...
T Consensus 103 ~~DvILGm~WL~~~~~~IDw~~k~v~f~~p 132 (135)
T PF08284_consen 103 GYDVILGMDWLKKHNPVIDWATKTVTFNSP 132 (135)
T ss_pred ceeeEeccchHHhCCCEEEccCCEEEEeCC
Confidence 346999999999999999999999999753
No 36
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=86.18 E-value=1.2 Score=34.67 Aligned_cols=35 Identities=20% Similarity=0.394 Sum_probs=30.4
Q ss_pred ceeEEEEEEeCCCCcEEEEEEecCCCCeeEeCCCCCC
Q 011045 156 SGEYFSRIGVGTPPRQFSMVLDTGSDINWLQCRPCTE 192 (495)
Q Consensus 156 ~g~Y~~~i~IGTP~q~~~livDTGS~~~WV~c~~C~~ 192 (495)
.+.+++.+.|| ++.+.+++|||++...|....+..
T Consensus 6 ~g~~~v~~~I~--g~~~~alvDtGat~~fis~~~a~r 40 (72)
T PF13975_consen 6 PGLMYVPVSIG--GVQVKALVDTGATHNFISESLAKR 40 (72)
T ss_pred CCEEEEEEEEC--CEEEEEEEeCCCcceecCHHHHHH
Confidence 58899999999 799999999999999997665443
No 37
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=86.13 E-value=1.8 Score=37.41 Aligned_cols=36 Identities=28% Similarity=0.479 Sum_probs=29.3
Q ss_pred CeeEEEEeeeeEecCeeeecCCCccccccCCCCcEEEccCccceeecHHHHHHH
Q 011045 338 DTFYYVGLTGFSVGGQAVQIPPSLFEMDEAGDGGIIVDCGTAITRLQTQAYNSL 391 (495)
Q Consensus 338 ~~~y~V~l~gIsVgg~~~~i~~~~~~~~~~~~~~~iiDSGTt~t~Lp~~~~~~l 391 (495)
.++|++. +.|+|+.+. ++||||.+.+.++++..+++
T Consensus 9 ~g~~~v~---~~InG~~~~---------------flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 9 DGHFYAT---GRVNGRNVR---------------FLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CCeEEEE---EEECCEEEE---------------EEEECCCCcEEcCHHHHHHc
Confidence 4778766 678888654 69999999999999988765
No 38
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=81.81 E-value=5.7 Score=37.46 Aligned_cols=82 Identities=16% Similarity=0.176 Sum_probs=57.3
Q ss_pred CceeEEEEEEeCCCCcEEEEEEecCCCCeeEeCCCCCCccCCCCCccCCCCCCcccCCCCCCccccCCCCCCcCCCCcce
Q 011045 155 GSGEYFSRIGVGTPPRQFSMVLDTGSDINWLQCRPCTECYQQSDPIFDPKTSSSYSPLPCAAPQCKSLDVSACRANRCLY 234 (495)
Q Consensus 155 ~~g~Y~~~i~IGTP~q~~~livDTGS~~~WV~c~~C~~C~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~~~C~~~~c~y 234 (495)
.+|.|.++..|- +|++.+++|||-+.+-+.-.... .--||.... . ..+
T Consensus 102 ~~GHF~a~~~VN--Gk~v~fLVDTGATsVal~~~dA~------RlGid~~~l------~------------------y~~ 149 (215)
T COG3577 102 RDGHFEANGRVN--GKKVDFLVDTGATSVALNEEDAR------RLGIDLNSL------D------------------YTI 149 (215)
T ss_pred CCCcEEEEEEEC--CEEEEEEEecCcceeecCHHHHH------HhCCCcccc------C------------------Cce
Confidence 479999999999 99999999999999888654321 112333211 1 344
Q ss_pred eeecCCCceEEEEEEEEEEEECCCccccceEEeEE
Q 011045 235 QVAYGDGSFTVGDLVTETVSFGNSGSVKGIALGCG 269 (495)
Q Consensus 235 ~~~Ygdgs~~~G~~~~Dtlt~g~~~~v~~~~fG~~ 269 (495)
.+.=.+|....-.+-.|.+.|| +..++++.=-.+
T Consensus 150 ~v~TANG~~~AA~V~Ld~v~IG-~I~~~nV~A~V~ 183 (215)
T COG3577 150 TVSTANGRARAAPVTLDRVQIG-GIRVKNVDAMVA 183 (215)
T ss_pred EEEccCCccccceEEeeeEEEc-cEEEcCchhhee
Confidence 5555688877667788999999 777776654333
No 39
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=81.79 E-value=2 Score=35.27 Aligned_cols=28 Identities=18% Similarity=0.491 Sum_probs=23.6
Q ss_pred EEEEEeCCCCcEEEEEEecCCCCeeEeCCC
Q 011045 160 FSRIGVGTPPRQFSMVLDTGSDINWLQCRP 189 (495)
Q Consensus 160 ~~~i~IGTP~q~~~livDTGS~~~WV~c~~ 189 (495)
+.+|.|. .+++.+++||||+.+-|+...
T Consensus 7 ~i~v~i~--g~~i~~LlDTGA~vsiI~~~~ 34 (100)
T PF00077_consen 7 YITVKIN--GKKIKALLDTGADVSIISEKD 34 (100)
T ss_dssp EEEEEET--TEEEEEEEETTBSSEEESSGG
T ss_pred eEEEeEC--CEEEEEEEecCCCcceecccc
Confidence 5677888 789999999999999997653
No 40
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=80.25 E-value=21 Score=32.64 Aligned_cols=20 Identities=15% Similarity=0.446 Sum_probs=17.9
Q ss_pred EEEccCccceeecHHHHHHH
Q 011045 372 IIVDCGTAITRLQTQAYNSL 391 (495)
Q Consensus 372 ~iiDSGTt~t~Lp~~~~~~l 391 (495)
++||||++......+..+.|
T Consensus 48 vLfDSGSPTSfIr~di~~kL 67 (177)
T PF12384_consen 48 VLFDSGSPTSFIRSDIVEKL 67 (177)
T ss_pred EEEeCCCccceeehhhHHhh
Confidence 79999999999998887776
No 41
>PF13650 Asp_protease_2: Aspartyl protease
Probab=80.03 E-value=2.4 Score=33.62 Aligned_cols=29 Identities=24% Similarity=0.515 Sum_probs=24.3
Q ss_pred eEecCeeeecCCCccccccCCCCcEEEccCccceeecHHHHHHH
Q 011045 348 FSVGGQAVQIPPSLFEMDEAGDGGIIVDCGTAITRLQTQAYNSL 391 (495)
Q Consensus 348 IsVgg~~~~i~~~~~~~~~~~~~~~iiDSGTt~t~Lp~~~~~~l 391 (495)
++|+|+.+. ++||||.+.+.+.++.++++
T Consensus 3 v~vng~~~~---------------~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 3 VKVNGKPVR---------------FLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEECCEEEE---------------EEEcCCCCcEEECHHHHHHc
Confidence 567777654 79999999999999988776
No 42
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=79.88 E-value=3 Score=33.79 Aligned_cols=29 Identities=28% Similarity=0.564 Sum_probs=25.6
Q ss_pred eEecCeeeecCCCccccccCCCCcEEEccCccceeecHHHHHHH
Q 011045 348 FSVGGQAVQIPPSLFEMDEAGDGGIIVDCGTAITRLQTQAYNSL 391 (495)
Q Consensus 348 IsVgg~~~~i~~~~~~~~~~~~~~~iiDSGTt~t~Lp~~~~~~l 391 (495)
+.|+|+.+. +.||||++.+.++++.+..+
T Consensus 5 ~~Ing~~i~---------------~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 5 LLVNGKPLK---------------FQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEECCEEEE---------------EEEcCCcceEEeCHHHHHHh
Confidence 778888876 69999999999999998876
No 43
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=77.76 E-value=4.3 Score=32.57 Aligned_cols=29 Identities=24% Similarity=0.501 Sum_probs=24.0
Q ss_pred eEecCeeeecCCCccccccCCCCcEEEccCccceeecHHHHHHH
Q 011045 348 FSVGGQAVQIPPSLFEMDEAGDGGIIVDCGTAITRLQTQAYNSL 391 (495)
Q Consensus 348 IsVgg~~~~i~~~~~~~~~~~~~~~iiDSGTt~t~Lp~~~~~~l 391 (495)
+.||++.+. ++||||++.+.++.+..+.+
T Consensus 7 v~i~~~~~~---------------~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 7 VTINGQPVR---------------FLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEECCEEEE---------------EEEECCCCcEEcCHHHHHHc
Confidence 677777665 79999999999999877665
No 44
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=74.17 E-value=8.2 Score=29.93 Aligned_cols=29 Identities=28% Similarity=0.445 Sum_probs=25.1
Q ss_pred eEecCeeeecCCCccccccCCCCcEEEccCccceeecHHHHHHH
Q 011045 348 FSVGGQAVQIPPSLFEMDEAGDGGIIVDCGTAITRLQTQAYNSL 391 (495)
Q Consensus 348 IsVgg~~~~i~~~~~~~~~~~~~~~iiDSGTt~t~Lp~~~~~~l 391 (495)
+.|+|..+. +++|||.+...++.+..+.|
T Consensus 13 ~~I~g~~~~---------------alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 13 VSIGGVQVK---------------ALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEECCEEEE---------------EEEeCCCcceecCHHHHHHh
Confidence 677887664 79999999999999998887
No 45
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=67.71 E-value=6.2 Score=32.14 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=21.3
Q ss_pred EEEeCCCCcEEEEEEecCCCCeeEeCC
Q 011045 162 RIGVGTPPRQFSMVLDTGSDINWLQCR 188 (495)
Q Consensus 162 ~i~IGTP~q~~~livDTGS~~~WV~c~ 188 (495)
.+.|+ .|.+.+++|||.+++-+.-.
T Consensus 2 ~~~i~--g~~~~~llDTGAd~Tvi~~~ 26 (87)
T cd05482 2 TLYIN--GKLFEGLLDTGADVSIIAEN 26 (87)
T ss_pred EEEEC--CEEEEEEEccCCCCeEEccc
Confidence 46677 89999999999999999643
No 46
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=62.69 E-value=10 Score=30.44 Aligned_cols=29 Identities=21% Similarity=0.334 Sum_probs=24.6
Q ss_pred eEecCeeeecCCCccccccCCCCcEEEccCccceeecHHHHHHH
Q 011045 348 FSVGGQAVQIPPSLFEMDEAGDGGIIVDCGTAITRLQTQAYNSL 391 (495)
Q Consensus 348 IsVgg~~~~i~~~~~~~~~~~~~~~iiDSGTt~t~Lp~~~~~~l 391 (495)
+.|||+.+. .++|||.+.+.++++..+.+
T Consensus 3 v~InG~~~~---------------fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPIV---------------FLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEEE---------------EEEECCCCeEEECHHHhhhc
Confidence 567777765 69999999999999988875
No 47
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=62.05 E-value=9.1 Score=30.72 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=21.3
Q ss_pred EEEeCCCCcEEEEEEecCCCCeeEeCCC
Q 011045 162 RIGVGTPPRQFSMVLDTGSDINWLQCRP 189 (495)
Q Consensus 162 ~i~IGTP~q~~~livDTGS~~~WV~c~~ 189 (495)
.+.|. ++++.+++|||++.+-+.-..
T Consensus 2 ~v~In--G~~~~fLvDTGA~~tii~~~~ 27 (86)
T cd06095 2 TITVE--GVPIVFLVDTGATHSVLKSDL 27 (86)
T ss_pred EEEEC--CEEEEEEEECCCCeEEECHHH
Confidence 45666 789999999999999996543
No 48
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=53.21 E-value=30 Score=32.73 Aligned_cols=44 Identities=23% Similarity=0.355 Sum_probs=33.1
Q ss_pred eeeeecCCCCCeeEEEEeeeeEecCeeeecCCCccccccCCCCcEEEccCccceeecHHHHHHH
Q 011045 328 TAPLIRNKKVDTFYYVGLTGFSVGGQAVQIPPSLFEMDEAGDGGIIVDCGTAITRLQTQAYNSL 391 (495)
Q Consensus 328 ~tpl~~~~~~~~~y~V~l~gIsVgg~~~~i~~~~~~~~~~~~~~~iiDSGTt~t~Lp~~~~~~l 391 (495)
.+.+.+. .+++|.++ ..|||+.+. .++|||.+.+.|+++....+
T Consensus 95 ~v~Lak~--~~GHF~a~---~~VNGk~v~---------------fLVDTGATsVal~~~dA~Rl 138 (215)
T COG3577 95 EVSLAKS--RDGHFEAN---GRVNGKKVD---------------FLVDTGATSVALNEEDARRL 138 (215)
T ss_pred EEEEEec--CCCcEEEE---EEECCEEEE---------------EEEecCcceeecCHHHHHHh
Confidence 4444443 45788766 789999887 69999999999998876554
No 49
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=52.03 E-value=12 Score=30.66 Aligned_cols=26 Identities=12% Similarity=0.464 Sum_probs=20.6
Q ss_pred eeEecCeeeecCCCccccccCCCCcEEEccCccceeecHHH
Q 011045 347 GFSVGGQAVQIPPSLFEMDEAGDGGIIVDCGTAITRLQTQA 387 (495)
Q Consensus 347 gIsVgg~~~~i~~~~~~~~~~~~~~~iiDSGTt~t~Lp~~~ 387 (495)
.|.++|+.+. ++||||...+.++++.
T Consensus 9 ~v~i~g~~i~---------------~LlDTGA~vsiI~~~~ 34 (100)
T PF00077_consen 9 TVKINGKKIK---------------ALLDTGADVSIISEKD 34 (100)
T ss_dssp EEEETTEEEE---------------EEEETTBSSEEESSGG
T ss_pred EEeECCEEEE---------------EEEecCCCcceecccc
Confidence 3667777665 7999999999999653
No 50
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=51.34 E-value=6.2 Score=32.70 Aligned_cols=28 Identities=21% Similarity=0.201 Sum_probs=13.7
Q ss_pred CCCCcchhHHHHHHHHhhhcccccccccCC
Q 011045 1 MAPIKPFVLFTITTILFSFCLFTSASSRGL 30 (495)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 (495)
|+-+++++|.++|.++|++|+ ++..|++
T Consensus 1 MaSK~~llL~l~LA~lLlisS--evaa~~~ 28 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISS--EVAAREL 28 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHh--hhhhHHh
Confidence 776665555443334444443 3344444
No 51
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=45.23 E-value=25 Score=28.83 Aligned_cols=21 Identities=24% Similarity=0.279 Sum_probs=18.9
Q ss_pred EEEccCccceeecHHHHHHHH
Q 011045 372 IIVDCGTAITRLQTQAYNSLR 392 (495)
Q Consensus 372 ~iiDSGTt~t~Lp~~~~~~l~ 392 (495)
+.+|||.+...||...|..+-
T Consensus 13 ~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 13 FQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred EEEecCCEEEeccHHHHhhhc
Confidence 799999999999999888764
No 52
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=40.70 E-value=35 Score=29.70 Aligned_cols=29 Identities=21% Similarity=0.312 Sum_probs=23.6
Q ss_pred eEecCeeeecCCCccccccCCCCcEEEccCccceeecHHHHHHH
Q 011045 348 FSVGGQAVQIPPSLFEMDEAGDGGIIVDCGTAITRLQTQAYNSL 391 (495)
Q Consensus 348 IsVgg~~~~i~~~~~~~~~~~~~~~iiDSGTt~t~Lp~~~~~~l 391 (495)
+++||+.+. +.||||+..+.++...++++
T Consensus 29 ~~ing~~vk---------------A~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 29 CKINGVPVK---------------AFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEETTEEEE---------------EEEETT-SS-EEEHHHHHHT
T ss_pred EEECCEEEE---------------EEEeCCCCccccCHHHHHHc
Confidence 778998876 79999999999999988874
No 53
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=37.05 E-value=1.8e+02 Score=23.77 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=17.1
Q ss_pred CCCcEEEccCccceeecHHHHH
Q 011045 368 GDGGIIVDCGTAITRLQTQAYN 389 (495)
Q Consensus 368 ~~~~~iiDSGTt~t~Lp~~~~~ 389 (495)
.+-..+||||..+..+|....+
T Consensus 8 s~~~fLVDTGA~vSviP~~~~~ 29 (89)
T cd06094 8 SGLRFLVDTGAAVSVLPASSTK 29 (89)
T ss_pred CCcEEEEeCCCceEeecccccc
Confidence 3455799999999999965543
No 54
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=32.04 E-value=66 Score=29.46 Aligned_cols=44 Identities=11% Similarity=0.215 Sum_probs=28.0
Q ss_pred eeccccCCCCCceeEEEEEEeCCCCcEEEEEEecCCCCeeEeCC
Q 011045 145 STPVVSGASQGSGEYFSRIGVGTPPRQFSMVLDTGSDINWLQCR 188 (495)
Q Consensus 145 ~~p~~~~~~~~~g~Y~~~i~IGTP~q~~~livDTGS~~~WV~c~ 188 (495)
..|++.........=...+.++.-..+++++|||||...++...
T Consensus 19 ~~PIV~~~~~Pevg~T~~v~l~~~~t~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 19 TCPIVHYIAIPEVGKTAIVQLNCKGTPIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred eeeeEEEeeccccCcEEEEEEeecCcEEEEEEeCCCccceeehh
Confidence 45555432222223334445555589999999999999988654
No 55
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=30.13 E-value=84 Score=27.37 Aligned_cols=36 Identities=11% Similarity=0.204 Sum_probs=24.7
Q ss_pred ceeEEEEEEeCCCCcEEEEEEecCCCCeeEeCCCCCCc
Q 011045 156 SGEYFSRIGVGTPPRQFSMVLDTGSDINWLQCRPCTEC 193 (495)
Q Consensus 156 ~g~Y~~~i~IGTP~q~~~livDTGS~~~WV~c~~C~~C 193 (495)
...+|+++.|+ ++++++.+|||...+-+.-.-+..|
T Consensus 22 v~mLyI~~~in--g~~vkA~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 22 VSMLYINCKIN--GVPVKAFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp ----EEEEEET--TEEEEEEEETT-SS-EEEHHHHHHT
T ss_pred cceEEEEEEEC--CEEEEEEEeCCCCccccCHHHHHHc
Confidence 35689999999 8999999999999988865433345
No 56
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=29.40 E-value=51 Score=27.05 Aligned_cols=18 Identities=11% Similarity=0.309 Sum_probs=15.1
Q ss_pred cEEEccCccceeecHHHH
Q 011045 371 GIIVDCGTAITRLQTQAY 388 (495)
Q Consensus 371 ~~iiDSGTt~t~Lp~~~~ 388 (495)
.++||||++.++++..-.
T Consensus 13 ~~~~DTGSs~~Wv~~~~c 30 (109)
T cd05470 13 NVLLDTGSSNLWVPSVDC 30 (109)
T ss_pred EEEEeCCCCCEEEeCCCC
Confidence 379999999999997643
No 57
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=25.63 E-value=48 Score=28.77 Aligned_cols=20 Identities=25% Similarity=0.300 Sum_probs=18.2
Q ss_pred EEEccCcc-ceeecHHHHHHH
Q 011045 372 IIVDCGTA-ITRLQTQAYNSL 391 (495)
Q Consensus 372 ~iiDSGTt-~t~Lp~~~~~~l 391 (495)
.+||||-+ ++.+|.++++++
T Consensus 29 ~LiDTGFtg~lvlp~~vaek~ 49 (125)
T COG5550 29 ELIDTGFTGYLVLPPQVAEKL 49 (125)
T ss_pred eEEecCCceeEEeCHHHHHhc
Confidence 48999999 999999999886
No 58
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=24.45 E-value=52 Score=26.88 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=17.7
Q ss_pred EEeCCCC-cEEEEEEecCCCCeeEe
Q 011045 163 IGVGTPP-RQFSMVLDTGSDINWLQ 186 (495)
Q Consensus 163 i~IGTP~-q~~~livDTGS~~~WV~ 186 (495)
+.|. . +++.+.+|||++..-++
T Consensus 3 ~~i~--g~~~v~~~vDtGA~vnllp 25 (93)
T cd05481 3 MKIN--GKQSVKFQLDTGATCNVLP 25 (93)
T ss_pred eEeC--CceeEEEEEecCCEEEecc
Confidence 4444 4 89999999999988775
No 59
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=21.60 E-value=6.1e+02 Score=26.29 Aligned_cols=38 Identities=13% Similarity=0.124 Sum_probs=30.3
Q ss_pred EEE-EEEecCCCceeecHHhhcceEEEEeCCCCEEEEee
Q 011045 455 FCF-AFAPTSSALSIIGNVQQQGTRVSFDLANNRVGFTP 492 (495)
Q Consensus 455 ~Cl-~~~~~~~~~~IlG~~fl~~~yvvfD~~~~rIGFa~ 492 (495)
.|- .+....+-...||.-.||.+--.-|++++++-|+.
T Consensus 307 ~c~ftV~d~~~~d~llGLd~Lrr~~ccIdL~~~~L~ig~ 345 (380)
T KOG0012|consen 307 PCSFTVLDRRDMDLLLGLDMLRRHQCCIDLKTNVLRIGN 345 (380)
T ss_pred ccceEEecCCCcchhhhHHHHHhccceeecccCeEEecC
Confidence 473 66655455688999999999999999999987764
No 60
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=20.30 E-value=1.2e+02 Score=25.51 Aligned_cols=24 Identities=17% Similarity=0.174 Sum_probs=18.4
Q ss_pred EEEEeCCC----CcEEEEEEecCCCCee
Q 011045 161 SRIGVGTP----PRQFSMVLDTGSDINW 184 (495)
Q Consensus 161 ~~i~IGTP----~q~~~livDTGS~~~W 184 (495)
+++.|+.| .-++.+++|||.+..-
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~ 29 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFL 29 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEE
Confidence 57778777 2378999999998653
Done!