RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 011046
(495 letters)
>gnl|CDD|238520 cd01087, Prolidase, Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro
dipeptidase, X-Pro dipeptidase, proline dipeptidase.,
imidodipeptidase, peptidase D, gamma-peptidase.
Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on
aminoacyl-hydroxyproline analogs. No action on Pro-Pro.
Length = 243
Score = 349 bits (897), Expect = e-119
Identities = 123/276 (44%), Positives = 164/276 (59%), Gaps = 33/276 (11%)
Query: 193 LALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCSYTCICATGENS 252
+ L++ A DIS+EAH MK +R GM EY++E+ F + G Y+ I A G N+
Sbjct: 1 IELMRKACDISAEAHRAAMKASRPGMSEYELEAEFEYEFRSRGARLA--YSYIVAAGSNA 58
Query: 253 AVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYNAVLK 312
A+LHY H ND+ +DGD+ L+D GAEY Y SDIT +FPVNGKFT +Q +Y AVL
Sbjct: 59 AILHYVH----NDQPLKDGDLVLIDAGAEYGGYASDITRTFPVNGKFTDEQRELYEAVLA 114
Query: 313 AHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGLGHF 372
A A I A KPGV + D+H LA +++ E LK+ G++ G+VDE++ + A F PHGLGH+
Sbjct: 115 AQKAAIAACKPGVSYEDIHLLAHRVLAEGLKELGILKGDVDEIVESGAYAKFFPHGLGHY 174
Query: 373 LGIDTHDPGGYPKGTERSKEPGLKSLRTVRELQERMVITVEPGCYFIDALLVPAMENEST 432
LG+D HD GGY L+ LR R L+ MVIT+EPG YFI LL
Sbjct: 175 LGLDVHDVGGY-----------LRYLRRARPLEPGMVITIEPGIYFIPDLLDVP------ 217
Query: 433 SKFFNHEVIGRFKDFGGVRIESDVLVTANGSKNMTS 468
+ GG+RIE DVLVT +G +N+T
Sbjct: 218 ----------EYFRGGGIRIEDDVLVTEDGPENLTR 243
>gnl|CDD|182804 PRK10879, PRK10879, proline aminopeptidase P II; Provisional.
Length = 438
Score = 231 bits (591), Expect = 9e-71
Identities = 127/354 (35%), Positives = 183/354 (51%), Gaps = 51/354 (14%)
Query: 134 QGHYKEPGKPLLFLLHGLNTDS-NNFSKPAQFEGMEKFETELNTLHPILSECRVFKSDHE 192
QG Y + + L L S N + PA L P + E R+FKS E
Sbjct: 129 QGEYAYADEIVFSALEKLRKGSRQNLTAPAT----------LTDWRPWVHEMRLFKSPEE 178
Query: 193 LALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCSYTCICATGENS 252
+A+++ A +IS+ AH M+K R GM EYQ+E +HH + G R+ SY I +GEN
Sbjct: 179 IAVLRRAGEISALAHTRAMEKCRPGMFEYQLEGE-IHHEFNRHGARYPSYNTIVGSGENG 237
Query: 253 AVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYNAVLK 312
+LHY N+ DGD+ L+D G EY+ Y DIT +FPVNGKFT Q IY+ VL+
Sbjct: 238 CILHY----TENESEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTPAQREIYDIVLE 293
Query: 313 AHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGLGHF 372
+ + +PG ++ +I++ L K G++ G+VD+++A F HGL H+
Sbjct: 294 SLETSLRLYRPGTSIREVTGEVVRIMVSGLVKLGILKGDVDQLIAENAHRPFFMHGLSHW 353
Query: 373 LGIDTHDPGGYPKGTERSK--EPGLKSLRTVRELQERMVITVEPGCYFIDALLVPAMENE 430
LG+D HD G Y G +RS+ EPG MV+TVEPG Y VP
Sbjct: 354 LGLDVHDVGVY--GQDRSRILEPG-------------MVLTVEPGLYIAPDADVPE---- 394
Query: 431 STSKFFNHEVIGRFKDFGGVRIESDVLVTANGSKNMT-SVPREISDIEAIMAGA 483
+ G G+RIE D+++T G++N+T SV ++ +IEA+MA A
Sbjct: 395 --------QYRGI-----GIRIEDDIVITETGNENLTASVVKKPDEIEALMAAA 435
>gnl|CDD|223085 COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and
metabolism].
Length = 384
Score = 220 bits (563), Expect = 3e-67
Identities = 112/424 (26%), Positives = 171/424 (40%), Gaps = 68/424 (16%)
Query: 57 DHLELFRQESYFAYLFGVREPGF---YGAIDIATGKSILFAPRLPPDYAVWLGKIKPLSY 113
L S F YL G GF + A G+ +LF + A IK +
Sbjct: 26 LDALLLTSPSNFYYLTGFDAFGFERLQALLVPAEGEPVLFVRGRDEEAAKETSWIKLENV 85
Query: 114 FQEKYMVNMVYYTDEIVGVLQGHYKEPGKPLLFLLHGLNTDSNNFSKPAQFEGMEKFETE 173
+ + D + +L+ GK + + F + E
Sbjct: 86 EVYEDDEDPAAPLDLLGALLEE-LGLAGKRIGIESASIFLTLAAFERLQAALP----RAE 140
Query: 174 LNTLHPILSECRVFKSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYM 233
L ++ R+ KS E+A I+ A +I+ A ++ R GM E ++ + +
Sbjct: 141 LVDASDLVDRLRLIKSPAEIAKIRKAAEIADAALEAALEAIRPGMTEAEIAAELEYALRK 200
Query: 234 YGGCRHCSYTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSF 293
GG S+ I A+GEN+A+ HY P+DR DGD+ L+D+G Y Y SDIT +F
Sbjct: 201 -GGAEGPSFDTIVASGENAALPHY----TPSDRKLRDGDLVLIDLGGVYNGYCSDITRTF 255
Query: 294 PVNGKFTSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVD 353
P+ GK + +Q IY AVL+A A I A++PGV ++ A +++ ++
Sbjct: 256 PI-GKPSDEQREIYEAVLEAQEAAIAAIRPGVTGGEVDAAARQVLEKAGYGLY------- 307
Query: 354 EMMAARLGAVFMPHGLGHFLGIDTHDPGGYPKGTERSKEPGLKSLRTVRELQERMVITVE 413
HG GH +G D +P + PG L+ MV ++E
Sbjct: 308 -----------FLHGTGHGVG-FVLDVHEHP----QYLSPGS-----DTTLEPGMVFSIE 346
Query: 414 PGCYFIDALLVPAMENESTSKFFNHEVIGRFKDFGGVRIESDVLVTANGSKNMTSVPREI 473
PG Y GGVRIE VLVT +G + +T VP+E+
Sbjct: 347 PGIYIPGG--------------------------GGVRIEDTVLVTEDGFEVLTRVPKEL 380
Query: 474 SDIE 477
IE
Sbjct: 381 LVIE 384
>gnl|CDD|215993 pfam00557, Peptidase_M24, Metallopeptidase family M24. This family
contains metallopeptidases. It also contains
non-peptidase homologues such as the N terminal domain
of Spt16 which is a histone H3-H4 binding module.
Length = 208
Score = 193 bits (492), Expect = 4e-59
Identities = 90/267 (33%), Positives = 126/267 (47%), Gaps = 59/267 (22%)
Query: 194 ALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCSYTCICATGENSA 253
L++ A I++ A + R G+ E ++ + GG R ++ I A+G N+A
Sbjct: 1 ELMRKAARIAAAALEAALAAIRPGVTERELAAELEAAFLARGGARGPAFPPIVASGPNAA 60
Query: 254 VLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYNAVLKA 313
V HY P+DR +DGD+ L+D+GAEY Y SDIT +F V GK T +Q +Y AVL+A
Sbjct: 61 VPHY----IPSDRVLKDGDLVLIDVGAEYDGYHSDITRTF-VVGKPTPEQRELYEAVLEA 115
Query: 314 HNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGLGHFL 373
A I A+KPGV D+ A +++ ++GG + PHGLGH +
Sbjct: 116 QEAAIAAVKPGVTGGDVDAAAREVL----EEGGY--------------GEYFPHGLGHGI 157
Query: 374 GIDTHDPGGYPKGTERSKEPGLKSLRTVRELQERMVITVEPGCYFIDALLVPAMENESTS 433
G+D HD G P + R L+ MV T+EPG YFI
Sbjct: 158 GLDVHDEG-----------PYISRGGNDRVLEPGMVFTIEPGIYFIP------------- 193
Query: 434 KFFNHEVIGRFKDFGGVRIESDVLVTA 460
+GGVRIE VLVT
Sbjct: 194 ------------GWGGVRIEDTVLVTE 208
>gnl|CDD|237444 PRK13607, PRK13607, proline dipeptidase; Provisional.
Length = 443
Score = 200 bits (511), Expect = 5e-59
Identities = 107/296 (36%), Positives = 154/296 (52%), Gaps = 30/296 (10%)
Query: 185 RVFKSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCS--- 241
R +K+D+ELA ++ A I+ H + R GM E+ ++ Y+
Sbjct: 159 RAYKTDYELACMREAQKIAVAGHRAAKEAFRAGMSEFD-----INLAYL-TATGQRDNDV 212
Query: 242 -YTCICATGENSAVLHY---GHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSF--PV 295
Y I A E++AVLHY H A R+F L+D GAEY Y +DIT ++
Sbjct: 213 PYGNIVALNEHAAVLHYTKLDHQAPAEMRSF------LIDAGAEYNGYAADITRTYAAKE 266
Query: 296 NGKFTSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVG-NVDE 354
+ F +LI V K A+I MKPGV +VD+H + I + L+K ++ G + +
Sbjct: 267 DNDF---AALI-KDVNKEQLALIATMKPGVSYVDLHIQMHQRIAKLLRKFQIVTGLSEEA 322
Query: 355 MMAARLGAVFMPHGLGHFLGIDTHDPGGY---PKGTERSKEPGLKSLRTVRELQERMVIT 411
M+ + + F PHGLGH LG+ HD G+ +GT + LR R L+ MV+T
Sbjct: 323 MVEQGITSPFFPHGLGHPLGLQVHDVAGFMQDDRGTHLAAPEKHPYLRCTRVLEPGMVLT 382
Query: 412 VEPGCYFIDALLVPAMENESTSKFFNHEVIGRFKDFGGVRIESDVLVTANGSKNMT 467
+EPG YFID+LL P + SK FN + I K FGG+RIE +V+V NG +NMT
Sbjct: 383 IEPGLYFIDSLLAP-LREGPFSKHFNWQKIDALKPFGGIRIEDNVVVHENGVENMT 437
>gnl|CDD|238525 cd01092, APP-like, Similar to Prolidase and Aminopeptidase P. The
members of this subfamily presumably catalyse hydrolysis
of Xaa-Pro dipeptides and/or release of any N-terminal
amino acid, including proline, that is linked with
proline.
Length = 208
Score = 140 bits (355), Expect = 5e-39
Identities = 82/271 (30%), Positives = 120/271 (44%), Gaps = 63/271 (23%)
Query: 193 LALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCSYTCICATGENS 252
+ L++ A I+ +A E+++ + GM E ++ + + G S+ I A+G NS
Sbjct: 1 IELLRKAARIADKAFEELLEFIKPGMTEREVAAELEYFMRKLGA-EGPSFDTIVASGPNS 59
Query: 253 AVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYNAVLK 312
A+ H P+DR E+GD+ L+D GA Y Y SDIT + V G+ + + IY VL+
Sbjct: 60 ALPHGV----PSDRKIEEGDLVLIDFGAIYDGYCSDITRTVAV-GEPSDELKEIYEIVLE 114
Query: 313 AHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGLGHF 372
A A I A+KPGV ++ K A +I E A G F H GH
Sbjct: 115 AQQAAIKAVKPGVTAKEVDKAARDVIEE-----------------AGYGEYF-IHRTGHG 156
Query: 373 LGIDTHDPGGYPKGTERSKEPGLKSLRTVRELQERMVITVEPGCYFIDALLVPAMENEST 432
+G++ H+ P + S + L+E MV T+EPG Y
Sbjct: 157 VGLEVHE---APYISPGSDDV----------LEEGMVFTIEPGIY--------------- 188
Query: 433 SKFFNHEVIGRFKDFGGVRIESDVLVTANGS 463
GGVRIE DVLVT +G
Sbjct: 189 -----------IPGKGGVRIEDDVLVTEDGC 208
>gnl|CDD|218491 pfam05195, AMP_N, Aminopeptidase P, N-terminal domain. This domain
is structurally very similar to the creatinase
N-terminal domain (pfam01321). However, little or no
sequence similarity exists between the two families.
Length = 134
Score = 111 bits (281), Expect = 2e-29
Identities = 42/145 (28%), Positives = 63/145 (43%), Gaps = 15/145 (10%)
Query: 12 VPKELYFINREKVLNSLRQHLTETSRPLHGFVLLQGGEEQTRYCTDHLELFRQESYFAYL 71
+P + + R ++L L + +L G E+ R D FRQ+S F YL
Sbjct: 1 IPAKEFAERRARLLALLPPN---------SAAILPGAPEKYRNR-DTEYPFRQDSDFYYL 50
Query: 72 FGVREPGFYGAI-DIATGKSILFAPRLPPDYAVWLGKIKPLSYFQEKYMVNMVYYTDEIV 130
G EP + D TGKS LF P P+Y +W G+ +EK+ V+ Y DE+
Sbjct: 51 TGFNEPDAVLVLKDGDTGKSTLFVPPKDPEYEIWDGRRPGPEEAKEKFGVDEAYPIDELD 110
Query: 131 GVLQGHYKEPGKPLLFLLHGLNTDS 155
+L + + + L TDS
Sbjct: 111 EILPELLEGAET----VYYALGTDS 131
>gnl|CDD|198079 smart01011, AMP_N, Aminopeptidase P, N-terminal domain. This
domain is structurally very similar to the creatinase
N-terminal domain. However, little or no sequence
similarity exists between the two families.
Length = 135
Score = 110 bits (276), Expect = 9e-29
Identities = 44/147 (29%), Positives = 62/147 (42%), Gaps = 14/147 (9%)
Query: 12 VPKELYFINREKVLNSLRQHLTETSRPLHGFVLLQGGEEQTRYCTDHLELFRQESYFAYL 71
+P Y R ++ L +L G E+ R D FRQ+S F YL
Sbjct: 1 IPAAEYAARRRRLAAKLFPG---------SVAVLPAGPEKVRSN-DTDYPFRQDSDFYYL 50
Query: 72 FGVREPGFYGAIDIA--TGKSILFAPRLPPDYAVWLGKIKPLSYFQEKYMVNMVYYTDEI 129
G EP +D + GKS LF P P+ +W G L +EK+ V+ VY DE+
Sbjct: 51 TGFDEPDAVLVLDPSGGGGKSTLFVPPRDPEDELWDGPRLGLEEAKEKFGVDEVYPIDEL 110
Query: 130 VGVLQGHYKEPGKPLLFLLHGLNTDSN 156
VL G G ++ L G + D +
Sbjct: 111 DAVLPG--LLAGAGTVYYLLGRDPDLD 135
>gnl|CDD|238514 cd01066, APP_MetAP, A family including aminopeptidase P,
aminopeptidase M, and prolidase. Also known as
metallopeptidase family M24. This family of enzymes is
able to cleave amido-, imido- and amidino-containing
bonds. Members exibit relatively narrow substrate
specificity compared to other metallo-aminopeptidases,
suggesting they play roles in regulation of biological
processes rather than general protein degradation.
Length = 207
Score = 112 bits (282), Expect = 9e-29
Identities = 65/270 (24%), Positives = 110/270 (40%), Gaps = 64/270 (23%)
Query: 193 LALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCSYTCICATGENS 252
+A ++ A +I+ A + R G+ E ++ + + G T + +G +
Sbjct: 1 IARLRKAAEIAEAAMAAAAEAIRPGVTEAEVAA-AIEQALRAAGGYPAGPTIV-GSGART 58
Query: 253 AVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYNAVLK 312
A+ HY P+DR ++GD+ L+D+G Y Y +D+T +F + G+ + +Q +Y AV +
Sbjct: 59 ALPHYR----PDDRRLQEGDLVLVDLGGVYDGYHADLTRTFVI-GEPSDEQRELYEAVRE 113
Query: 313 AHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGLGHF 372
A A + A++PGV ++ A +++ E H GH
Sbjct: 114 AQEAALAALRPGVTAEEVDAAAREVLEEHGLGPNF------------------GHRTGHG 155
Query: 373 LGIDTHDPGGYPKGTERSKEPGLKSLRTVRELQERMVITVEPGCYFIDALLVPAMENEST 432
+G++ H+P G + L+ MV VEPG Y
Sbjct: 156 IGLEIHEPPVLKAGDD-------------TVLEPGMVFAVEPGLYLPGG----------- 191
Query: 433 SKFFNHEVIGRFKDFGGVRIESDVLVTANG 462
GGVRIE VLVT +G
Sbjct: 192 ---------------GGVRIEDTVLVTEDG 206
>gnl|CDD|182080 PRK09795, PRK09795, aminopeptidase; Provisional.
Length = 361
Score = 96.9 bits (241), Expect = 6e-22
Identities = 90/327 (27%), Positives = 138/327 (42%), Gaps = 83/327 (25%)
Query: 164 FEGME-------KFETELNT--LHPILSECRVFKSDHELALIQFANDISSEAHVEVMKKT 214
FEG + ++++ELN + R K+ E+ I+ A I+ + +
Sbjct: 95 FEGQQVSWETAHRWQSELNAKLVSATPDVLRQIKTPEEVEKIRLACGIADRGAEHIRRFI 154
Query: 215 RVGMKEYQMES---MFLHHTYMYGGCRHCSYTCICATGENSAVLHYGHAAAPNDRTFEDG 271
+ GM E ++ + F+ G S+ I A+G A+ H G A+ D+ G
Sbjct: 155 QAGMSEREIAAELEWFMRQQ----GAEKASFDTIVASGWRGALPH-GKAS---DKIVAAG 206
Query: 272 DMALLDMGAEYQFYGSDITCSFPVNGKFTSDQS----LIYNAVLKAHNAVINAMKPGVCW 327
+ LD GA YQ Y SD+T + VNG+ S +S +Y VL+A A I+A++PGV
Sbjct: 207 EFVTLDFGALYQGYCSDMTRTLLVNGEGVSAESHPLFNVYQIVLQAQLAAISAIRPGVRC 266
Query: 328 VDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGLGHFLGIDTH-DPGGYPKG 386
+ A ++I E A G F H GH +GI+ H DP P+
Sbjct: 267 QQVDDAARRVITE-----------------AGYGDYF-GHNTGHAIGIEVHEDPRFSPRD 308
Query: 387 TERSKEPGLKSLRTVRELQERMVITVEPGCYFIDALLVPAMENESTSKFFNHEVIGRFKD 446
T LQ M++TVEPG Y +P
Sbjct: 309 TTT--------------LQPGMLLTVEPGIY------LPGQ------------------- 329
Query: 447 FGGVRIESDVLVTANGSKNMTSVPREI 473
GGVRIE VLVT G++ + ++P+ +
Sbjct: 330 -GGVRIEDVVLVTPQGAEVLYAMPKTV 355
>gnl|CDD|238518 cd01085, APP, X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also known
as X-Pro aminopeptidase, proline aminopeptidase,
aminopeptidase P, and aminoacylproline aminopeptidase.
Catalyses release of any N-terminal amino acid,
including proline, that is linked with proline, even
from a dipeptide or tripeptide.
Length = 224
Score = 61.0 bits (149), Expect = 1e-10
Identities = 52/226 (23%), Positives = 82/226 (36%), Gaps = 70/226 (30%)
Query: 241 SYTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFT 300
S+ I G N A++HY ++R + L+D G +Y +DIT + + G+ T
Sbjct: 53 SFDTISGFGPNGAIVHY-SPTEESNRKISPDGLYLIDSGGQYLDGTTDITRTVHL-GEPT 110
Query: 301 SDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVG-NVDEMMAAR 359
++Q Y VLK H A+ A P KG G +D +
Sbjct: 111 AEQKRDYTLVLKGHIALARAKFP--------------------KG--TTGSQLDALARQP 148
Query: 360 LGAVFMP------HGLGHFLGIDTHDPGGYPKGTERSKEPGLKSLRTVRELQERMVITVE 413
L + HG+G FL + H+ P+ + L+ M+++ E
Sbjct: 149 LWKAGLDYGHGTGHGVGSFLNV--HEG---PQSISPAPNNV--------PLKAGMILSNE 195
Query: 414 PGCYFIDALLVPAMENESTSKFFNHEVIGRFKDFGGVRIESDVLVT 459
PG Y K+ G+RIE+ VLV
Sbjct: 196 PGYY-------------KEGKY-------------GIRIENLVLVV 215
>gnl|CDD|223103 COG0024, Map, Methionine aminopeptidase [Translation, ribosomal
structure and biogenesis].
Length = 255
Score = 50.3 bits (121), Expect = 6e-07
Identities = 55/241 (22%), Positives = 90/241 (37%), Gaps = 55/241 (22%)
Query: 188 KSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESM---FLHHTYMYGGCRHC-SY- 242
K+ E+ ++ A I+++A EV + G+ +++ + F+ Y +
Sbjct: 6 KTPEEIEKMREAGKIAAKALKEVASLVKPGVTTLELDEIAEEFIREKGAYPAFLGYKGFP 65
Query: 243 --TCICATGENSAVLHYGHAAAPND-RTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKF 299
TCI N V H P D + ++GD+ +D+GA Y D +F V
Sbjct: 66 FPTCISV---NEVVAHG----IPGDKKVLKEGDIVKIDVGAHIDGYIGDTAITFVVGEVS 118
Query: 300 TSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAE--KIILESLKKGGVMVGNVDEMMA 357
D + A +A A I A+KPG +L + + I E + G V V +
Sbjct: 119 DEDAKRLLEATKEALYAGIEAVKPGA------RLGDIGRAIQEYAESRGFSV--VRNL-- 168
Query: 358 ARLGAVFMPHGLGHFLGIDTHD----PGGYPKGTERSKEPGLKSLRTVRELQERMVITVE 413
GH +G + H+ P GT L+E MV +E
Sbjct: 169 -----------TGHGIGRELHEEPSIPNYGKDGTG-------------VRLKEGMVFAIE 204
Query: 414 P 414
P
Sbjct: 205 P 205
>gnl|CDD|173039 PRK14575, PRK14575, putative peptidase; Provisional.
Length = 406
Score = 45.9 bits (108), Expect = 4e-05
Identities = 59/249 (23%), Positives = 98/249 (39%), Gaps = 27/249 (10%)
Query: 180 ILSECRVFKSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRH 239
I +E RV KS E+ ++ + +I+ E K RVG ++ + + M H
Sbjct: 171 IFNELRVIKSPWEIKRLRKSAEITEYGITEASKLIRVGCTSAELTAAY-KAAVMSKSETH 229
Query: 240 CSYTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKF 299
S + + G + + P++ GD+ D G + YG+DI +F V G+
Sbjct: 230 FSRFHLISVGAD-----FSPKLIPSNTKACSGDLIKFDCGVDVDGYGADIARTFVV-GEP 283
Query: 300 TSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAAR 359
IY + H +++ + PGV D+ +E +KK G+ N
Sbjct: 284 PEITRKIYQTIRTGHEHMLSMVAPGVKMKDVFDST----MEVIKKSGLPNYN-----RGH 334
Query: 360 LGAVFMPHGLGHFLGID------THDPGGYPKGTERSKEPGLKSLRTVRELQERMVITVE 413
LG HG G FLG++ TH + G S E + E M++ +
Sbjct: 335 LG-----HGNGVFLGLEESPFVSTHATESFTSGMVLSLETPYYGYNLGSIMIEDMILINK 389
Query: 414 PGCYFIDAL 422
G F+ L
Sbjct: 390 EGIEFLSKL 398
>gnl|CDD|181534 PRK08671, PRK08671, methionine aminopeptidase; Provisional.
Length = 291
Score = 45.2 bits (108), Expect = 4e-05
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Query: 256 HYGHAAAPND-RTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYNAVLKAH 314
HY +P D R F +GD+ LD+GA Y +D + + GK+ + L+ A +A
Sbjct: 61 HY--TPSPGDERVFPEGDVVKLDLGAHVDGYIADTAVTVDLGGKY---EDLV-EASEEAL 114
Query: 315 NAVINAMKPGV 325
A I ++PGV
Sbjct: 115 EAAIEVVRPGV 125
>gnl|CDD|185095 PRK15173, PRK15173, peptidase; Provisional.
Length = 323
Score = 45.5 bits (107), Expect = 4e-05
Identities = 59/249 (23%), Positives = 98/249 (39%), Gaps = 27/249 (10%)
Query: 180 ILSECRVFKSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRH 239
I +E RV KS E+ ++ + +I+ E K RVG ++ + + M H
Sbjct: 88 IFNELRVIKSPWEIKRLRKSAEITEYGITEASKLIRVGCTSAELTAAY-KAAVMSKSETH 146
Query: 240 CSYTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKF 299
S + + G + + P++ GD+ D G + YG+DI +F V G+
Sbjct: 147 FSRFHLISVGAD-----FSPKLIPSNTKACSGDLIKFDCGVDVDGYGADIARTFVV-GEP 200
Query: 300 TSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAAR 359
IY + H +++ + PGV D+ +E +KK G+ N
Sbjct: 201 PEITRKIYQTIRTGHEHMLSMVAPGVKMKDVFDST----MEVIKKSGLPNYN-----RGH 251
Query: 360 LGAVFMPHGLGHFLGID------THDPGGYPKGTERSKEPGLKSLRTVRELQERMVITVE 413
LG HG G FLG++ TH + G S E + E M++ +
Sbjct: 252 LG-----HGNGVFLGLEESPFVSTHATESFTSGMVLSLETPYYGYNLGSIMIEDMILINK 306
Query: 414 PGCYFIDAL 422
G F+ L
Sbjct: 307 EGIEFLSKL 315
>gnl|CDD|129591 TIGR00500, met_pdase_I, methionine aminopeptidase, type I.
Methionine aminopeptidase is a cobalt-binding enzyme.
Bacterial and organellar examples (type I) differ from
eukaroytic and archaeal (type II) examples in lacking a
region of approximately 60 amino acids between the 4th
and 5th cobalt-binding ligands. This model describes
type I. The role of this protein in general is to
produce the mature form of cytosolic proteins by
removing the N-terminal methionine [Protein fate,
Protein modification and repair].
Length = 247
Score = 44.6 bits (106), Expect = 4e-05
Identities = 36/164 (21%), Positives = 59/164 (35%), Gaps = 33/164 (20%)
Query: 251 NSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYNAV 310
N V+H P+ + +DGD+ +D+G Y Y D +F V + L+
Sbjct: 71 NEVVIH----GIPDKKVLKDGDIVNIDVGVIYDGYHGDTAKTFLVGKISPEAEKLL-ECT 125
Query: 311 LKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGLG 370
++ I KPG ++ +K KG +V + HG+G
Sbjct: 126 EESLYKAIEEAKPGNRIGEIGAAIQKYAEA---KGFSVVRE------------YCGHGIG 170
Query: 371 HFLGIDTHDPGGYPKGTERSKEPGLKSLRTVRELQERMVITVEP 414
+ P K T ++ L+E MV T+EP
Sbjct: 171 RKFHEEPQIPNYGKKFT------NVR-------LKEGMVFTIEP 201
>gnl|CDD|238519 cd01086, MetAP1, Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also
known as methionyl aminopeptidase and Peptidase M.
Catalyzes release of N-terminal amino acids,
preferentially methionine, from peptides and arylamides.
Length = 238
Score = 44.4 bits (106), Expect = 5e-05
Identities = 46/177 (25%), Positives = 62/177 (35%), Gaps = 44/177 (24%)
Query: 242 YTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTS 301
C N V H P+DR +DGD+ +D+G E Y D +F V
Sbjct: 57 SICTSV---NEVVCH----GIPDDRVLKDGDIVNIDVGVELDGYHGDSARTFIVGEVSEE 109
Query: 302 DQSLIYNAVLKAHNAVINAMKPGVCWVD----MHKLAEKIILESLKKGGVMVGNVDEMMA 357
+ L+ +A I A+KPG D + K AE K G +V
Sbjct: 110 AKKLV-EVTEEALYKGIEAVKPGNRIGDIGHAIEKYAE-------KNGYSVVRE------ 155
Query: 358 ARLGAVFMPHGLGHFLGIDTHDPGGYPKGTERSKEPGLKSLRTVRELQERMVITVEP 414
F HG+G + P GT G K L+ MV T+EP
Sbjct: 156 ------FGGHGIGRKFHEEPQIPNYGRPGT------GPK-------LKPGMVFTIEP 193
>gnl|CDD|235576 PRK05716, PRK05716, methionine aminopeptidase; Validated.
Length = 252
Score = 40.1 bits (95), Expect = 0.001
Identities = 47/243 (19%), Positives = 85/243 (34%), Gaps = 61/243 (25%)
Query: 188 KSDHELALIQFANDISSEAHVEVMKKTRVGM-------------KEYQMESMFLHHTYMY 234
K+ E+ ++ A +++E E+ + G+ ++ L + + +
Sbjct: 6 KTPEEIEKMRVAGRLAAEVLDEIEPHVKPGVTTKELDRIAEEYIRDQGAIPAPLGY-HGF 64
Query: 235 GGCRHCSYTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFP 294
C N V H P+D+ ++GD+ +D+ Y D + +F
Sbjct: 65 PK-----SICTSV---NEVVCH----GIPSDKVLKEGDIVNIDVTVIKDGYHGDTSRTFG 112
Query: 295 VNGKFT-SDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAE--KIILESLKKGGVMVGN 351
V G+ + D+ L +A I A+KPG +L + I + + G V
Sbjct: 113 V-GEISPEDKRLC-EVTKEALYLGIAAVKPGA------RLGDIGHAIQKYAEAEGFSV-- 162
Query: 352 VDEMMAARLGAVFMPHGLGHFLGIDTHDPGGYPKGTERSKEPGLKSLRTVRELQERMVIT 411
V E + HG+G + P G L+E MV T
Sbjct: 163 VRE---------YCGHGIGRKFHEEPQIPHYGAPGDG-------------PVLKEGMVFT 200
Query: 412 VEP 414
+EP
Sbjct: 201 IEP 203
>gnl|CDD|173040 PRK14576, PRK14576, putative endopeptidase; Provisional.
Length = 405
Score = 38.1 bits (88), Expect = 0.008
Identities = 43/197 (21%), Positives = 79/197 (40%), Gaps = 21/197 (10%)
Query: 180 ILSECRVFKSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRH 239
+ +E R+ KS E+ ++ + +I+ KK RVG ++ + F +
Sbjct: 170 LFNEIRMIKSPWEIEHLRKSAEITEYGIASAAKKIRVGCTAAELTAAFKAAVMSFPETNF 229
Query: 240 CSYTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKF 299
+ I + G+N + + + GD+ D G + YG+D+ +F V G+
Sbjct: 230 SRFNLI-SVGDN-----FSPKIIADTTPAKVGDLIKFDCGIDVAGYGADLARTF-VLGEP 282
Query: 300 TSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAAR 359
IY+ + H +++ + PGV + +I K G+ N
Sbjct: 283 DKLTQQIYDTIRTGHEHMLSMVAPGVKLKAVFDSTMAVI----KTSGLPHYN-----RGH 333
Query: 360 LGAVFMPHGLGHFLGID 376
LG HG G FLG++
Sbjct: 334 LG-----HGDGVFLGLE 345
>gnl|CDD|183434 PRK12318, PRK12318, methionine aminopeptidase; Provisional.
Length = 291
Score = 36.3 bits (84), Expect = 0.026
Identities = 46/171 (26%), Positives = 67/171 (39%), Gaps = 37/171 (21%)
Query: 245 ICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVN-GKFTSDQ 303
IC T N + H PND ++GD+ +D+ Y D CS V G+ + +
Sbjct: 108 IC-TSLNEVICH----GIPNDIPLKNGDIMNIDVSCIVDGYYGD--CSRMVMIGEVSEIK 160
Query: 304 SLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAV 363
+ A L+ NA I +KPG+ L E +G V E A + G
Sbjct: 161 KKVCQASLECLNAAIAILKPGI------PLYE-------------IGEVIENCADKYGFS 201
Query: 364 FMPHGLGHFLGIDTHDPGGYPKGTERSKEPGLKSLRTVRELQERMVITVEP 414
+ +GH +GI H+ P SK P L M+ T+EP
Sbjct: 202 VVDQFVGHGVGIKFHENPYVPHHRNSSKIP----------LAPGMIFTIEP 242
>gnl|CDD|129592 TIGR00501, met_pdase_II, methionine aminopeptidase, type II.
Methionine aminopeptidase (map) is a cobalt-binding
enzyme. Bacterial and organellar examples (type I)
differ from eukaroytic and archaeal (type II) examples
in lacking a region of approximately 60 amino acids
between the 4th and 5th cobalt-binding ligands. The role
of this protein in general is to produce the mature
amino end of cytosolic proteins by removing the
N-terminal methionine. This model describes type II,
among which the eukaryotic members typically have an
N-terminal extension not present in archaeal members. It
can act cotranslationally. The enzyme from rat has been
shown to associate with translation initiation factor 2
(IF-2) and may have a role in translational regulation
[Protein fate, Protein modification and repair].
Length = 295
Score = 35.9 bits (83), Expect = 0.031
Identities = 29/141 (20%), Positives = 57/141 (40%), Gaps = 11/141 (7%)
Query: 199 ANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCSYTCICATGENSAVLHYG 258
A I S+ E + G+K ++ + G ++ C + E +A H+
Sbjct: 11 AGKIHSKVRREAADRIVPGVKLLEVAEFVENRIRELGA--EPAFPCNISINECAA--HF- 65
Query: 259 HAAAPND-RTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYNAVLKAHNAV 317
D F+DGD+ LD+GA Y +D + + ++ + + A A
Sbjct: 66 -TPKAGDKTVFKDGDVVKLDLGAHVDGYIADTAITVDLGDQYDN----LVKAAKDALYTA 120
Query: 318 INAMKPGVCWVDMHKLAEKII 338
I ++ GV ++ K +++I
Sbjct: 121 IKEIRAGVRVGEIGKAIQEVI 141
>gnl|CDD|238524 cd01091, CDC68-like, Related to aminopeptidase P and aminopeptidase
M, a member of this domain family is present in cell
division control protein 68, a transcription factor.
Length = 243
Score = 35.0 bits (81), Expect = 0.055
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 6/67 (8%)
Query: 278 MGAEYQFYGSDITCSFPVNGKFTSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKI 337
+GA Y+ Y S+I +F ++ TS+Q YN +L ++ +KPG D++ +
Sbjct: 98 LGARYKSYCSNIARTFLIDP--TSEQQKNYNFLLALQEEILKELKPGAKLSDVY----QK 151
Query: 338 ILESLKK 344
L+ +KK
Sbjct: 152 TLDYIKK 158
>gnl|CDD|238522 cd01089, PA2G4-like, Related to aminopepdidase M, this family
contains proliferation-associated protein 2G4. Family
members have been implicated in cell cycle control.
Length = 228
Score = 34.2 bits (79), Expect = 0.093
Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 7/100 (7%)
Query: 243 TCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPV-NGKFTS 301
TCI N+ V H+ + T +DGD+ +D+G Y + + + V T
Sbjct: 61 TCISV---NNCVCHFSPLKSDATYTLKDGDVVKIDLGCHIDGYIAVVAHTIVVGAEAETP 117
Query: 302 DQSLIYNAVLKAHNA---VINAMKPGVCWVDMHKLAEKII 338
+ + AH A + ++PG D+ + +K+I
Sbjct: 118 VTGKKADVIAAAHYALEAALRLLRPGNQNSDITEAIQKVI 157
>gnl|CDD|238521 cd01088, MetAP2, Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also
known as methionyl aminopeptidase and peptidase M.
Catalyzes release of N-terminal amino acids,
preferentially methionine, from peptides and arylamides.
Length = 291
Score = 34.1 bits (79), Expect = 0.14
Identities = 32/137 (23%), Positives = 48/137 (35%), Gaps = 29/137 (21%)
Query: 199 ANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCR-----HCSYTCICATGENSA 253
A +I + + GM ++ F+ + G + S A
Sbjct: 7 AGEIHRQVRKYAQSLIKPGMTLLEIAE-FVENRIRELGAGPAFPVNLSINECAA------ 59
Query: 254 VLHYGHAAAPN---DRTFEDGDMALLDMGAEYQFYGSD--ITCSFPVNGKFTSDQSLIYN 308
HY PN D ++GD+ LD GA Y +D T F + K+ L+
Sbjct: 60 --HY----TPNAGDDTVLKEGDVVKLDFGAHVDGYIADSAFTVDF--DPKY---DDLL-E 107
Query: 309 AVLKAHNAVINAMKPGV 325
A +A NA I P V
Sbjct: 108 AAKEALNAAIKEAGPDV 124
>gnl|CDD|237252 PRK12896, PRK12896, methionine aminopeptidase; Reviewed.
Length = 255
Score = 33.3 bits (77), Expect = 0.21
Identities = 37/152 (24%), Positives = 55/152 (36%), Gaps = 31/152 (20%)
Query: 188 KSDHELALIQFANDISSEAHVEVMKKTRVGM---------KEYQMESM-----FLHHTYM 233
KS EL ++ I + A E+ K GM ++ +E Y
Sbjct: 11 KSPRELEKMRKIGRIVATALKEMGKAVEPGMTTKELDRIAEKR-LEEHGAIPSPEG-YYG 68
Query: 234 YGGCRHCSYTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITC-S 292
+ G TCI N V H P R +DGD+ +D+ A Y D T +
Sbjct: 69 FPGS-----TCISV---NEEVAH----GIPGPRVIKDGDLVNIDVSAYLDGYHGD-TGIT 115
Query: 293 FPVNGKFTSDQSLIYNAVLKAHNAVINAMKPG 324
F V G + + + +A A I +K G
Sbjct: 116 FAV-GPVSEEAEKLCRVAEEALWAGIKQVKAG 146
>gnl|CDD|240891 cd12445, RRM2_CPEBs, RNA recognition motif 2 in cytoplasmic
polyadenylation element-binding protein CPEB-1, CPEB-2,
CPEB-3, CPEB-4 and similar protiens. This subfamily
corresponds to the RRM2 of CPEB family of proteins that
bind to defined groups of mRNAs and act as either
translational repressors or activators to regulate their
translation. CPEB proteins are well conserved in both,
vertebrates and invertebrates. Based on sequence
similarity, RNA-binding specificity, and functional
regulation of translation, the CPEB proteins has been
classified into two subfamilies. The first subfamily
includes CPEB-1 and related proteins. CPEB-1 is an
RNA-binding protein that interacts with the cytoplasmic
polyadenylation element (CPE), a short U-rich motif in
the 3' untranslated regions (UTRs) of certain mRNAs. It
functions as a translational regulator that plays a
major role in the control of maternal CPE-containing
mRNA in oocytes, as well as of subsynaptic
CPE-containing mRNA in neurons. Once phosphorylated and
recruiting the polyadenylation complex, CPEB-1 may
function as a translational activator stimulating
polyadenylation and translation. Otherwise, it may
function as a translational inhibitor when
dephosphorylated and bound to a protein such as maskin
or neuroguidin, which blocks translation initiation
through interfering with the assembly of eIF-4E and
eIF-4G. Although CPEB-1 is mainly located in cytoplasm,
it can shuttle between nucleus and cytoplasm. The second
subfamily includes CPEB-2, CPEB-3, CPEB-4, and related
protiens. Due to the high sequence similarity, members
in this subfamily may share similar expression patterns
and functions. CPEB-2 is an RNA-binding protein that is
abundantly expressed in testis and localized in
cytoplasm in transfected HeLa cells. It preferentially
binds to poly(U) RNA oligomers and may regulate the
translation of stored mRNAs during spermiogenesis.
Moreover, CPEB-2 impedes target RNA translation at
elongation. It directly interacts with the elongation
factor, eEF2, to reduce eEF2/ribosome-activated GTP
hydrolysis in vitro and inhibit peptide elongation of
CPEB2-bound RNA in vivo. CPEB-3 is a sequence-specific
translational regulatory protein that regulates
translation in a polyadenylation-independent manner. It
functions as a translational repressor that governs the
synthesis of the AMPA receptor GluR2 through binding
GluR2 mRNA. It also represses translation of a reporter
RNA in transfected neurons and stimulates translation in
response to NMDA. CPEB-4 is an RNA-binding protein that
mediates meiotic mRNA cytoplasmic polyadenylation and
translation. It is essential for neuron survival and
present on the endoplasmic reticulum (ER). It is
accumulated in the nucleus upon ischemia or the
depletion of ER calcium. CPEB-4 is overexpressed in a
large variety of tumors and is associated with many
mRNAs in cancer cells. All CPEB proteins are
nucleus-cytoplasm shuttling proteins. They contain an
N-terminal unstructured region, followed by two RNA
recognition motifs (RRMs), also termed RBDs (RNA binding
domains) or RNPs (ribonucleoprotein domains), and a
Zn-finger motif. CPEB-2, -3, and -4 have conserved
nuclear export signals that are not present in CPEB-1. .
Length = 81
Score = 30.4 bits (69), Expect = 0.34
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 8/48 (16%)
Query: 347 VMVGNVD-----EMMAARLGAVFMPHGLGHFLGIDTHDPGGYPKGTER 389
V VG + +AA L ++ ++ IDT + YP G R
Sbjct: 3 VFVGGLPLPLTAAELAAILERLYGGVC---YVEIDTDEFYLYPTGCAR 47
>gnl|CDD|215607 PLN03158, PLN03158, methionine aminopeptidase; Provisional.
Length = 396
Score = 31.7 bits (72), Expect = 0.79
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 11/83 (13%)
Query: 246 CATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSL 305
C T N + H P+ R EDGD+ +D+ Y+ D+ +F V + + L
Sbjct: 200 CCTSVNEVICH----GIPDARKLEDGDIVNVDVTVYYKGCHGDLNETFFVGNVDEASRQL 255
Query: 306 I---YNAVLKAHNAVINAMKPGV 325
+ Y + KA I +KPGV
Sbjct: 256 VKCTYECLEKA----IAIVKPGV 274
>gnl|CDD|213032 cd11672, ADDz, ADDz for ATRX, Dnmt3 and Dnmt3l PHD-like zinc finger
domain. The ADDz zinc finger domain is present in the
chromatin-associated proteins
cytosine-5-methyltransferase 3 (Dnmt3) and ATRX, a SNF2
type transcription factor protein. The Dnmt3 family
includes two active DNA methyltransferases, Dnmt3a and
-3b, and one regulatory factor Dnmt3l. DNA methylation
is an important epigenetic mechanism involved in diverse
biological processes such as embryonic development, gene
expression, and genomic imprinting. The ADDz domain is a
PHD-like zinc finger motif that contains two parts, a
C2-C2 and a PHD-like zinc finger. PHD zinc finger
domains have been identified in more than 40 proteins
that are mainly involved in chromatin mediated
transcriptional control; the classical PHD zinc finger
has a C4-H-C3 motif that spans about 50-80 amino acids.
In ADDz, the conserved histidine residue of the PHD
finger is replaced by a cysteine, and an additional zinc
finger C2-C2 like motif is located about twenty residues
upstream of the C4-C-C3 motif.
Length = 120
Score = 29.5 bits (67), Expect = 1.5
Identities = 11/33 (33%), Positives = 13/33 (39%), Gaps = 5/33 (15%)
Query: 219 KEYQMESMFLHHTYMYGGCRHCSYTCICATGEN 251
KE E M Y+Y + SY IC G
Sbjct: 31 KENFKECM-----YLYDNDGYQSYCTICCGGGE 58
>gnl|CDD|184685 PRK14453, PRK14453, chloramphenicol/florfenicol resistance protein;
Provisional.
Length = 347
Score = 30.5 bits (69), Expect = 2.2
Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 15 ELYFINR----EKVLNSLRQHLTETSRPLH-GFVLLQGGEEQTRYCTDHLELFRQESYFA 69
EL IN+ +V+ +L +H+ T R ++ +++L+G + + + L R +
Sbjct: 221 ELMPINKRFPLNEVMKTLDEHIRHTGRKVYIAYIMLEGVNDSKEHAEAVVGLLRNRGSWE 280
Query: 70 YLFGV 74
+L+ V
Sbjct: 281 HLYHV 285
>gnl|CDD|220794 pfam10517, DM13, Electron transfer DM13. The DM13 domain is a
component of a novel electron-transfer system
potentially involved in oxidative modification of animal
cell-surface proteins. It contains a nearly absolutely
conserved cysteine, which could be involved in a redox
reaction, either as a naked thiol group or through
binding a prosthetic group like heme.
Length = 107
Score = 27.6 bits (62), Expect = 5.0
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
Query: 81 GAIDIATGKSIL-----FAPRLPPDYAVWLGK 107
G + I GK++L FAP PDY V+LG
Sbjct: 15 GTVTIVDGKTLLVLEFDFAPSGGPDYKVYLGP 46
>gnl|CDD|224170 COG1250, FadB, 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism].
Length = 307
Score = 29.1 bits (66), Expect = 5.3
Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 4/68 (5%)
Query: 342 LKKGGVMVGNVDEMMAARLGAVFMPHGLGHFLGIDTHDPGGYPKGTERSKEPGLKSLRTV 401
L++G +D M LG P L +G+D ++ G
Sbjct: 204 LEEGVATPEEIDAAMRQGLGLPMGPFELADLIGLDV----MLHIMKVLNETLGDDPYYRP 259
Query: 402 RELQERMV 409
L ++V
Sbjct: 260 PPLLRKLV 267
>gnl|CDD|215538 PLN02996, PLN02996, fatty acyl-CoA reductase.
Length = 491
Score = 29.3 bits (66), Expect = 6.1
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 422 LLVPAMENESTSKFFNHEVIGRFKD-FGGVRIESDVLVTANGSKNMTSVPREIS 474
LL+ A + +S ++ + EVIG KD F +R + + + S+ +T VP +IS
Sbjct: 43 LLLRASDAKSATQRLHDEVIG--KDLFKVLREKLGENLNSLISEKVTPVPGDIS 94
>gnl|CDD|213033 cd11725, ADDz_Dnmt3, ADDz domain of DNA (cytosine-5)
methyltransferases (C5-MTases) 3 (Dnmt3). Dnmt3 is a de
novo DNA methyltransferase family that includes two
active enzymes Dnmt3a and -3b and one regulatory factor
Dnmt3l. The ADDz domain of Dnmt3 is located in the
C-terminal region of Dnmt3, which is an active catalytic
domain in Dnmt3a and -b, but lacks some residues for
enzymatic activity in Dnmt3l. DNA methylation is an
important epigenetic mechanism involved in diverse
biological processes such as embryonic development, gene
expression, and genomic imprinting. The ADDz_Dnmt3
domain is a PHD-like zinc finger motif that contains two
parts, a C2-C2 and a PHD-like zinc finger. PHD zinc
finger domains have been identified in more than 40
proteins that are mainly involved in chromatin mediated
transcriptional control; the classical PHD zinc finger
has a C4-H-C3 motif that spans about 50-80 amino acids.
In ADDz, the conserved histidine residue of the PHD
finger is replaced by a cysteine, and an additional zinc
finger C2-C2 like motif is located about twenty residues
upstream of the C4-C-C3 motif.
Length = 126
Score = 28.0 bits (63), Expect = 6.3
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 226 MFLHHTYMYGGCRHCSYTCICATGEN 251
FL Y+Y + SY IC G
Sbjct: 33 NFLECMYLYDNDGYQSYCTICCGGGE 58
>gnl|CDD|129586 TIGR00495, crvDNA_42K, 42K curved DNA binding protein. Proteins
identified by This model have been identified in a
number of species as a nuclear (but not nucleolar)
protein with a cell cycle dependence. Various names
given to members of this family have included cell cycle
protein p38-2G4, DNA-binding protein GBP16, and
proliferation-associated protein 1. This protein is
closely related to methionine aminopeptidase, a
cobolt-binding protein [Unknown function, General].
Length = 389
Score = 28.7 bits (64), Expect = 7.8
Identities = 20/99 (20%), Positives = 39/99 (39%), Gaps = 7/99 (7%)
Query: 243 TCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSD 302
TCI N+ V H+ + D ++GD+ +D+G + + + +F V
Sbjct: 79 TCISV---NNCVGHFSPLKSDQDYILKEGDVVKIDLGCHIDGFIALVAHTFVVGVAQEEP 135
Query: 303 QSLIYNAVLKAHNAVINA----MKPGVCWVDMHKLAEKI 337
+ V+ A + A +KPG + + K+
Sbjct: 136 VTGRKADVIAAAHLAAEAALRLVKPGNTNTQVTEAINKV 174
>gnl|CDD|153239 cd03145, GAT1_cyanophycinase, Type 1 glutamine amidotransferase
(GATase1)-like domain found in cyanophycinase. Type 1
glutamine amidotransferase (GATase1)-like domain found
in cyanophycinase. This group contains proteins similar
to the extracellular cyanophycinases from Pseudomonas
anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803
CphB. Cyanophycinases are intracellular exopeptidases
which hydrolyze the polymer cyanophycin (multi
L-arginyl-poly-L-aspartic acid) to the dipeptide
beta-Asp-Arg. Cyanophycinase is believed to be a
serine-type exopeptidase having a Ser-His-Glu catalytic
triad which differs from the Cys-His-Glu catalytic triad
typical of GATase1 domains by having a Ser in place of
the reactive Cys at the nucleophile elbow.
Length = 217
Score = 28.4 bits (64), Expect = 8.0
Identities = 15/61 (24%), Positives = 21/61 (34%), Gaps = 16/61 (26%)
Query: 334 AEKIILESLKKGGVMVGN-------VDEMMAA-------RLGAVFMPHGLG--HFLGIDT 377
+ + + G V+ G D M+A R V M GLG + ID
Sbjct: 106 LLDALRKVYRGGVVIGGTSAGAAVMSDTMIAGGGAGEAPRESEVDMAPGLGFVPNVIIDQ 165
Query: 378 H 378
H
Sbjct: 166 H 166
>gnl|CDD|216344 pfam01175, Urocanase, Urocanase.
Length = 545
Score = 28.7 bits (65), Expect = 8.6
Identities = 26/92 (28%), Positives = 36/92 (39%), Gaps = 22/92 (23%)
Query: 314 HNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGLGHFL 373
NA++N G WV +H + S G V+V + E A RL V
Sbjct: 462 LNALLNTAS-GATWVSLHHGGGVGMGYSQHAGFVIVADGTEEAAERLERVL--------- 511
Query: 374 GIDTHDPG---------GYPKGTERSKEPGLK 396
T+DPG GY E ++E GL+
Sbjct: 512 ---TNDPGMGVIRHADAGYEIAIETAREKGLR 540
>gnl|CDD|100034 cd02203, PurL_repeat1, PurL subunit of the formylglycinamide
ribonucleotide amidotransferase (FGAR-AT), first repeat.
FGAR-AT catalyzes the ATP-dependent conversion of
formylglycinamide ribonucleotide (FGAR) and glutamine to
formylglycinamidine ribonucleotide (FGAM), ADP,
phosphate, and glutamate in the fourth step of the
purine biosynthetic pathway. In eukaryotes and
Gram-negative bacteria, FGAR-AT is encoded by the purL
gene as a multidomain protein with a molecular mass of
about 140 kDa. In Gram-positive bacteria and archaea
FGAR-AT is a complex of three proteins: PurS, PurL, and
PurQ. PurL itself contains two tandem N- and C-terminal
domains (four domains altogether). The N-terminal
domains bind ATP and are related to the ATP-binding
domains of HypE, ThiL, SelD and PurM.
Length = 313
Score = 28.2 bits (64), Expect = 8.9
Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 26/72 (36%)
Query: 391 KEPGLKSLRTVREL-----QERMVITVEPGCYFIDALLVPAMENESTSKFFNHE-----V 440
+EPG+ + E+ QERM++ V P ++ L E V
Sbjct: 248 REPGM----SPWEIWISESQERMLLVVPPED--LEEFL----------AICKKEDLEAAV 291
Query: 441 IGRFKDFGGVRI 452
IG D G +R+
Sbjct: 292 IGEVTDDGRLRL 303
>gnl|CDD|146128 pfam03333, PapB, Adhesin biosynthesis transcription regulatory
protein. This family includes PapB, DaaA, FanA, FanB,
and AfaA.
Length = 91
Score = 26.5 bits (59), Expect = 9.9
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 7/36 (19%)
Query: 4 SSSLSPPKVPKELYF-------INREKVLNSLRQHL 32
L P V +E ++ I+ EKV+N+LR +L
Sbjct: 15 EGYLLPGSVSEEHFWLLIEISSIHSEKVINALRDYL 50
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.136 0.410
Gapped
Lambda K H
0.267 0.0766 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 25,355,229
Number of extensions: 2494101
Number of successful extensions: 2176
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2112
Number of HSP's successfully gapped: 45
Length of query: 495
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 394
Effective length of database: 6,457,848
Effective search space: 2544392112
Effective search space used: 2544392112
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.2 bits)