RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 011046
(495 letters)
>2iw2_A XAA-Pro dipeptidase; metallocarboxypeptidase, disease mutation,
XAA-Pro dipeptida dipeptidase, peptidase D, collagen
degradation; 1.82A {Homo sapiens} PDB: 2okn_A
Length = 494
Score = 633 bits (1635), Expect = 0.0
Identities = 271/478 (56%), Positives = 336/478 (70%), Gaps = 7/478 (1%)
Query: 9 PPKVPKELYFINREKVLNSLRQHLTETSRPLHGFVLLQGGEEQTRYCTDHLELFRQESYF 68
KVP L+ +NR+++ LR++ + V+LQGGEE RYCTD LFRQES+F
Sbjct: 16 TLKVPLALFALNRQRLCERLRKNPAVQA---GSIVVLQGGEETQRYCTDTGVLFRQESFF 72
Query: 69 AYLFGVREPGFYGAIDIATGKSILFAPRLPPDYAVWLGKIKPLSYFQEKYMVNMVYYTDE 128
+ FGV EPG YG ID+ TGKS LF PRLP +A W+GKI +F+EKY V+ V Y DE
Sbjct: 73 HWAFGVTEPGCYGVIDVDTGKSTLFVPRLPASHATWMGKIHSKEHFKEKYAVDDVQYVDE 132
Query: 129 IVGVLQGHYKEPGKPLLFLLHGLNTDSNNFSKPAQFEGMEKFETELNTLHPILSECRVFK 188
I VL +L L G+NTDS + + A F+G+ KFE LHP + ECRVFK
Sbjct: 133 IASVL----TSQKPSVLLTLRGVNTDSGSVCREASFDGISKFEVNNTILHPEIVECRVFK 188
Query: 189 SDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCSYTCICAT 248
+D EL ++++ N ISSEAH EVMK +VGMKEY++ES+F H+ Y GG RH SYTCIC +
Sbjct: 189 TDMELEVLRYTNKISSEAHREVMKAVKVGMKEYELESLFEHYCYSRGGMRHSSYTCICGS 248
Query: 249 GENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYN 308
GENSAVLHYGHA APNDRT ++GDM L DMG EY + SDITCSFP NGKFT+DQ +Y
Sbjct: 249 GENSAVLHYGHAGAPNDRTIQNGDMCLFDMGGEYYCFASDITCSFPANGKFTADQKAVYE 308
Query: 309 AVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHG 368
AVL++ AV+ AMKPGV W DMH+LA++I LE L G++ G+VD M+ A LGAVFMPHG
Sbjct: 309 AVLRSSRAVMGAMKPGVWWPDMHRLADRIHLEELAHMGILSGSVDAMVQAHLGAVFMPHG 368
Query: 369 LGHFLGIDTHDPGGYPKGTERSKEPGLKSLRTVRELQERMVITVEPGCYFIDALLVPAME 428
LGHFLGID HD GGYP+G ER EPGL+SLRT R LQ MV+TVEPG YFID LL A+
Sbjct: 369 LGHFLGIDVHDVGGYPEGVERIDEPGLRSLRTARHLQPGMVLTVEPGIYFIDHLLDEALA 428
Query: 429 NESTSKFFNHEVIGRFKDFGGVRIESDVLVTANGSKNMTSVPREISDIEAIMAGAPWP 486
+ + + FFN EV+ RF+ FGGVRIE DV+VT +G + +T VPR + +IEA MAG
Sbjct: 429 DPARASFFNREVLQRFRGFGGVRIEEDVVVTDSGIELLTCVPRTVEEIEACMAGCDKA 486
>3rva_A Organophosphorus acid anhydrolase; PITA-bread fold, binuclea
center, BI-functional, prolidase, nerve agents, XAA-Pro
DIP hydrolase; 1.80A {Alteromonas macleodii}
Length = 451
Score = 538 bits (1387), Expect = 0.0
Identities = 116/471 (24%), Positives = 210/471 (44%), Gaps = 34/471 (7%)
Query: 14 KELYFINREKVLNSLRQHLTETSRPLHGFVLLQGGEEQTRYCTDHLELFRQESYF-AYLF 72
K Y + E++ R+ L R +++ G+ + + D+ F+ F A++
Sbjct: 5 KATYQQHIEELQARTREAL---QREGLDGLVIHSGQGKRLFLDDNHYPFKVNPQFKAWVP 61
Query: 73 GVREPGFYGAIDIATGKSILFAPRLPPDYAVWLGKI-KPLSYFQEKYMVNMVYYTDEIVG 131
+ P + ++ +++F P D+ W +P ++ + + + ++ D +
Sbjct: 62 VIDNPNCWLVVNGVDKPTLIFYR--PEDF--WHKVPPEPNDFWTDSFDIKLLQQADAVEK 117
Query: 132 VLQGHYKEPGKPLLFLLHGLNTDSNNFSKPAQFEGMEKFETELNTLHPILSECRVFKSDH 191
L P F G + + A+ G + + + L R +K+D+
Sbjct: 118 FL------PYDKSRFAYVG------EYIEVAKALGFDNVNPD--RVLHYLHYQRAYKTDY 163
Query: 192 ELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCSYTCICATGEN 251
EL ++ AN ++ H + R G E+ + + + G YT I A E+
Sbjct: 164 ELDCMREANKLAVAGHKAAEQAFREGKSEFDINLAYAAASR--QGDNDVPYTSIVALNEH 221
Query: 252 SAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQS-LIYNAV 310
+++LHY + ++ L+D GA Y Y +DIT ++ G S + AV
Sbjct: 222 ASILHYMQC---DTVAPKESRSFLIDAGANYHGYAADITRTYAQEGVHNSAMFRDLIQAV 278
Query: 311 LKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGLG 370
K +++++KPGV + D+H LA I + L G++ E++ + F PHG+G
Sbjct: 279 DKVTLTLVDSLKPGVAYTDIHLLAHDGIAQILHDTGMVNLTPPEIVEMGITRTFFPHGIG 338
Query: 371 HFLGIDTHDPGGYP---KGTERSKEPGLKSLRTVRELQERMVITVEPGCYFIDALLVPAM 427
HFLG+ HD GG +GT + LR R ++ R V T+EPG YFID+LL
Sbjct: 339 HFLGLQVHDVGGLVNDDRGTPKPAPDDHPFLRCTRMVEARQVFTIEPGLYFIDSLLRDLK 398
Query: 428 ENESTSKFFNHEVIGRFKDFGGVRIESDVLVTANGSKNMTS-VPREISDIE 477
SK+ N + I +K FGG+RIE +++V + ++NMT + +
Sbjct: 399 ATP-ASKYINWDTIDAYKPFGGIRIEDNIIVHRDKNENMTRDLDLNLEHHH 448
>3l24_A XAA-Pro dipeptidase; PITA-bread, detoxification, hydrolase,
manganese, metal-binding, metalloprotease, protease;
2.30A {Alteromonas SP} PDB: 3l7g_A*
Length = 517
Score = 519 bits (1339), Expect = 0.0
Identities = 106/498 (21%), Positives = 205/498 (41%), Gaps = 47/498 (9%)
Query: 16 LYFINREKVLNSLRQHLTETSRPLHGFVLLQGGEEQTRYCTDHLELFRQESYF-AYLFGV 74
LY + + R+ + R V+ G+ + ++ D F+ F A+L +
Sbjct: 7 LYAEHIATLQKRTREII---ERENLDGVVFHSGQAKRQFLDDMYYPFKVNPQFKAWLPVI 63
Query: 75 REPGFYGAIDIATGKSILFAPRLPPDYAVWLGKIKPLSYFQEKYMVNMVYYTDEIVGVLQ 134
P + + ++F + + V P Y+ + + + ++ D++ +L
Sbjct: 64 DNPHCWIVANGTDKPKLIFYRPVDFWHKVPDE---PNEYWADYFDIELLVKPDQVEKLLP 120
Query: 135 GHYKEPGKPLLFLLHGLNTDSNNFSKPAQFEGMEKFETELNTLHPILSECRVFKSDHELA 194
++ L + E + R +K+ +ELA
Sbjct: 121 YD----KARFAYIGEYLEVAQALGFELMNPEP----------VMNFYHYHRAYKTQYELA 166
Query: 195 LIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCSYTCICATGENSAV 254
++ AN I+ + H G E++++ +L T Y I A EN A+
Sbjct: 167 CMREANKIAVQGHKAARDAFFQGKSEFEIQQAYLLATQ--HSENDNPYGNIVALNENCAI 224
Query: 255 LHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYNAVLKAH 314
LHY H + L+D GA + Y +DIT ++ G+ + + + +
Sbjct: 225 LHYTH---FDRVAPATHRSFLIDAGANFNGYAADITRTYDFTGEGEFAE--LVATMKQHQ 279
Query: 315 NAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGLGHFLG 374
A++N + PG + ++H + + ++L ++ + DE++A + + F PHGLGH +G
Sbjct: 280 IALMNQLAPGKLYGELHLDCHQRVAQTLSDFNIVDLSADEIVAKGITSTFFPHGLGHHIG 339
Query: 375 IDTHDPGGY---PKGTERSKEPGLKSLRTVRELQERMVITVEPGCYFIDALLVPAMENES 431
+ HD GG+ +G + G LR R+++ V T+EPG YFID+LL +
Sbjct: 340 LQVHDVGGFMADEQGAHQEPPEGHPFLRCTRKIEANQVFTIEPGLYFIDSLLGD-LAATD 398
Query: 432 TSKFFNHEVIGRFKDFGGVRIESDVLVTANGSKNMTSV---------------PREISDI 476
++ N + + K FGG+RIE +++V + +NMT P+ +
Sbjct: 399 NNQHINWDKVAELKPFGGIRIEDNIIVHEDSLENMTRELRLRLTTHSLRGLSAPQFSIND 458
Query: 477 EAIMAGAPWPSNKTAPSN 494
A+M+ +PS +
Sbjct: 459 PAVMSEYSYPSEPLSYEE 476
>2v3z_A XAA-Pro aminopeptidase; 'PITA-bread' enzyme, proline- specific
enzyme, aminopeptidas manganese enzyme, protease,
manganese; HET: CSO; 1.56A {Escherichia coli} SCOP:
c.55.2.1 d.127.1.1 PDB: 2bwy_A* 1wl9_A 1m35_A 1n51_A*
1w2m_A 1a16_A 1wbq_A 1wl6_A* 1w7v_A 1wlr_A* 2bh3_A*
2bha_A* 2bhb_A* 2bhc_A* 2bhd_A* 2bn7_A* 1jaw_A 2bwt_A*
2bwu_A* 2bww_A* ...
Length = 440
Score = 493 bits (1271), Expect = e-173
Identities = 138/483 (28%), Positives = 219/483 (45%), Gaps = 57/483 (11%)
Query: 11 KVPKELYFINREKVLNSLRQHLTETSRPLHGFVLLQGGEEQTRYCTDHLELFRQESYFAY 70
++ ++ + R+ ++ ++ L+ E TR D +RQ S F Y
Sbjct: 2 EISRQEFQRRRQALVEQMQPG---------SAALIFAAPEVTR-SADSEYPYRQNSDFWY 51
Query: 71 LFGVREPGFYGAI---DIATGKSILFAPRLPPDYAVWLGKIKPLSYFQEKYMVNMVYYTD 127
G EP + D S+LF +W G+ EK V+
Sbjct: 52 FTGFNEPEAVLVLIKSDDTHNHSVLFNRVRDLTAEIWFGRRLGQDAAPEKLGVDRALAFS 111
Query: 128 EIVGVLQGHYKEPGKPLLFLLHGLNTDSNNFSKPAQFEGMEKFE------TELNTLHPIL 181
EI L G +++ G ++ A + + + P++
Sbjct: 112 EINQQLYQLLN--GLDVVYHAQGEYAYADVIVNSALEKLRKGSRQNLTAPATMIDWRPVV 169
Query: 182 SECRVFKSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCS 241
E R+FKS E+A+++ A +I++ AH M+K R GM EY +E H + G R+ S
Sbjct: 170 HEMRLFKSPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHE-FNRHGARYPS 228
Query: 242 YTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTS 301
Y I +GEN +LHY N+ DGD+ L+D G EY+ Y DIT +FPVNGKFT
Sbjct: 229 YNTIVGSGENGCILHYTE----NECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQ 284
Query: 302 DQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLG 361
Q IY+ VL++ + +PG +++ +I++ L K G++ G+VDE++A
Sbjct: 285 AQREIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAH 344
Query: 362 AVFMPHGLGHFLGIDTHDPGGYPKGTERSKEPGLKSLRTVRELQERMVITVEPGCYFIDA 421
F HGL H+LG+D HD G Y + R EPG MV+TV PG Y
Sbjct: 345 RPFFMHGLSHWLGLDVHDVGVYGQDRSRILEPG-------------MVLTVAPGLYIAPD 391
Query: 422 LLVPAMENESTSKFFNHEVIGRFKDFGGVRIESDVLVTANGSKNMTS-VPREISDIEAIM 480
VP +++ G+RIE D+++T G++N+T+ V ++ +IEA+M
Sbjct: 392 AEVPE----------------QYRGI-GIRIEDDIVITETGNENLTASVVKKPEEIEALM 434
Query: 481 AGA 483
A
Sbjct: 435 VAA 437
>3ig4_A XAA-Pro aminopeptidase; csgid, hydrolase, struct genomics, center
for structural genomics of infectious DISE; HET: SO4;
2.89A {Bacillus anthracis}
Length = 427
Score = 486 bits (1254), Expect = e-170
Identities = 126/478 (26%), Positives = 212/478 (44%), Gaps = 69/478 (14%)
Query: 12 VPKELYFINREKVLNSLRQHLTETSRPLHGFVLLQGGEEQTRYCTDHLELFRQESYFAYL 71
+ + + NRE+++N+L P +L G+ D F F Y+
Sbjct: 1 MKSKFFAQNRERLVNTL---------PDESITILFAGQAPHM-SADAHYKFVPNRNFYYV 50
Query: 72 FGVREPGFYGAIDIA--TGKSILFAPRLPPDYAVWLGKIKPLSYFQEKYMVNMVYYTDEI 129
G+ EP + + + LF + P W+GK ++ + V Y D
Sbjct: 51 TGIDEPNVIFMLKKFGNSVEETLFIEKSDPVMEKWVGKTVSNEEAEKISGIKKVIYLDSF 110
Query: 130 VGVLQGHYKEPGKPLLFLLHGLNTDSNNFSKPAQFEGMEKFE---TELNTLHPILSECRV 186
+ + L+L +K F + + + ++P + E RV
Sbjct: 111 EKTMSNIFFTENVKHLYLDLECREWKGTETKTLAFAKHVREQYPHVTIGNVYPNICELRV 170
Query: 187 FKSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCSYTCIC 246
FK+D E+ +I+ A ++ + V+K + M EY++E+ F G +H ++ I
Sbjct: 171 FKTDEEIEIIKEAIAVTKDGIYNVLKHAKADMMEYELEAQFDFT-LKSSGIKHHAFNTIL 229
Query: 247 ATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLI 306
A+G+N+ VLHY ND ++GD+ LLD+GA+ +Y +DI+ +FP NG F+S Q I
Sbjct: 230 ASGKNATVLHY----EDNDAQIQNGDLVLLDLGAQKDYYNADISYTFPANGTFSSRQKQI 285
Query: 307 YNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMP 366
YN VL A +KPG+ + +++ A+K++ E K G++ + + +
Sbjct: 286 YNIVLNALKETTEIIKPGLKFAALNEHAKKVLAEGCKAVGLIQEDEELS-------KYYY 338
Query: 367 HGLGHFLGIDTHDPGGYPKGTERSKEPGLKSLRTVRELQERMVITVEPGCYFIDALLVPA 426
HG+ HFLG+DTHD G Y R L+E MVIT+EPG Y + +
Sbjct: 339 HGVSHFLGLDTHDVGTYKD----------------RVLEEGMVITIEPGLYIEEESI--- 379
Query: 427 MENESTSKFFNHEVIGRFKDFGGVRIESDVLVTANGSKNMTS-VPREISDIEAIMAGA 483
G+RIE D+LVT +G +N++ + RE+ +IE M
Sbjct: 380 ----------------------GIRIEDDILVTKDGHENLSKDIIREVEEIEEFMREN 415
>3q6d_A Proline dipeptidase; structural genomics, csgid, center for
structural genomics O infectious diseases,
aminopeptidase, viral protein; 1.97A {Bacillus
anthracis}
Length = 356
Score = 190 bits (484), Expect = 3e-56
Identities = 81/313 (25%), Positives = 129/313 (41%), Gaps = 64/313 (20%)
Query: 162 AQFEGM-EKFETELNTLHPILSECRVFKSDHELALIQFANDISSEAHVEVMKKTRVGMKE 220
+ + E + E ++ + R+ K+D E+ +++ A I+ A ++ R G+ E
Sbjct: 104 SSYSAHKEAIDAEFIPTSGLVEKLRLIKTDSEIKILKEAAQIADAAFEHILSFIRPGVSE 163
Query: 221 YQMESMFLHHTYMYGGCRHCSYTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGA 280
++ S L G S+ I A+G SA+ H +++ E GD LD GA
Sbjct: 164 IEV-SNELEFFMRKQGATSSSFDIIVASGLRSALPH----GVASEKVIETGDFVTLDFGA 218
Query: 281 EYQFYGSDITCSFPVNGKFTSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILE 340
Y+ Y SDIT + V G+ + IYN VL+A +N +K G+ + L I E
Sbjct: 219 YYKGYCSDITRTIAV-GEPSDKLKEIYNIVLEAQLRGVNGIKAGLTGREADALTRDYITE 277
Query: 341 SLKKGGVMVGNVDEMMAARLGAVFMPHGLGHFLGIDTHDPGGYPKGTERSKEPGLKSLRT 400
G F H GH +G++ H+ P RS
Sbjct: 278 -----------------KGYGEYF-GHSTGHGIGLEIHE---APGLAFRSDTV------- 309
Query: 401 VRELQERMVITVEPGCYFIDALLVPAMENESTSKFFNHEVIGRFKDFGGVRIESDVLVTA 460
L+ M +TVEPG Y +P GGVRIE D++VT+
Sbjct: 310 ---LEPGMAVTVEPGIY------IP--------------------GIGGVRIEDDIIVTS 340
Query: 461 NGSKNMTSVPREI 473
G++ +T P+E+
Sbjct: 341 EGNEVITKSPKEL 353
>2zsg_A Aminopeptidase P, putative; hydrolase; 1.65A {Thermotoga maritima}
Length = 359
Score = 188 bits (480), Expect = 2e-55
Identities = 76/314 (24%), Positives = 134/314 (42%), Gaps = 65/314 (20%)
Query: 162 AQFEGMEKF--ETELNTLHPILSECRVFKSDHELALIQFANDISSEAHVEVMKKTRVGMK 219
+ F + + + + + + R+ K + E+ I+ A +IS A +E +++ R GM
Sbjct: 106 SLFRRISSAFGDRKFIGIDDEVKQMRMVKDEGEIEKIKQAIEISERAFLETVQQIRAGMT 165
Query: 220 EYQMESMFLHHTYMYGGCRHCSYTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMG 279
E ++ + L +T G ++ I A+G SA+ H +D+ E GD+ ++D G
Sbjct: 166 EKEI-AALLEYTMRKEGAEGVAFDTIVASGCRSALPH----GKASDKVVERGDVIVIDFG 220
Query: 280 AEYQFYGSDITCSFPVNGKFTSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIIL 339
A Y+ Y +DIT + G+ + + +++ VL+A + K GV + +A + I
Sbjct: 221 ATYENYCADITRVVSI-GEPSDEVKEVHSIVLEAQERALKIAKAGVTGKLLDSVAREFIR 279
Query: 340 ESLKKGGVMVGNVDEMMAARLGAVFMPHGLGHFLGIDTHDPGGYPKGTERSKEPGLKSLR 399
E G F H LGH +G++ H+ P + R+ P
Sbjct: 280 E-----------------KGYGEFF-GHSLGHGIGLEVHE---GPAISFRNDSP------ 312
Query: 400 TVRELQERMVITVEPGCYFIDALLVPAMENESTSKFFNHEVIGRFKDFGGVRIESDVLVT 459
L E +V TVEPG Y + G+RIE DV++
Sbjct: 313 ----LPENVVFTVEPGIY------LE--------------------GKFGIRIEEDVVLK 342
Query: 460 ANGSKNMTSVPREI 473
G + +T++PR I
Sbjct: 343 EQGCEILTTLPRSI 356
>3biq_A FACT complex subunit SPT16; PITA-bread, aminopeptidase, chromatin,
replication, AC chromosomal protein, DNA damage, DNA
repair; 1.73A {Saccharomyces cerevisiae} PDB: 3bip_A
3bit_A*
Length = 467
Score = 188 bits (479), Expect = 2e-54
Identities = 54/516 (10%), Positives = 141/516 (27%), Gaps = 102/516 (19%)
Query: 18 FINREKVLNSLRQHLTETSRPLHGFVLLQGGEEQTRYCTDHLELFRQESYFAYLFGVREP 77
F R + L E + + + G + +L P
Sbjct: 13 FKKR---IELLYSKYNEFEGSPNSLLFVLGSSN------AENPYQKTTILHNWLLSYEFP 63
Query: 78 GFYGAIDIATGKSILF------APRLPPDYAVWLGKIKPLSYFQEKYMVNMVYYTDEIVG 131
+ ++ A L ++ ++ + ++
Sbjct: 64 A---TLIALVPGKVIIITSSAKAKHLQKAIDLFKDPESKITLELWQRNNKEPELNKKLFD 120
Query: 132 VLQGHYKEPGKPLLFLLH-GLNTDSNNFSKPAQFEGMEKFETELNTLHPILSECRVFKSD 190
+ GK + P +++ E + + LS+ K
Sbjct: 121 DVIALINSAGKTVGIPEKDSYQGKFMTEWNPVWEAAVKENEFNVIDISLGLSKVWEVKDV 180
Query: 191 HELALIQFANDISSEA-------------------HVEVMKKTRVGMK--------EYQM 223
+E A + ++ S + + ++ K + +
Sbjct: 181 NEQAFLSVSSKGSDKFMDLLSNEMVRAVDEELKITNAKLSDKIENKIDDVKFLKQLSPDL 240
Query: 224 ESMFLHHTYMYGGCRHCSYTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQ 283
++ + +Y+ I +G+ + A + L G Y
Sbjct: 241 SALCPPNYKFNFDLLDWTYSPIIQSGKKFDLRV--SAR-STNDQLYGNGCILASCGIRYN 297
Query: 284 FYGSDITCSFPVNGKFTSDQSLIYNAVLKAHNAVI-NAMKPGVCWVDMHKLAEKIILESL 342
Y S+IT +F ++ + + + Y+ +L ++ N +KPG ++++ + I
Sbjct: 298 NYCSNITRTFLIDP--SEEMANNYDFLLTLQKEIVTNILKPGRTPKEVYESVIEYI---- 351
Query: 343 KKGGVMVGNVDEMMAARLGAVFMPHGLGHFLGIDTHDPGGYPKGTERSKEPGLKSLRTVR 402
+K + +G +G++ D L R
Sbjct: 352 EKTKPELVP------------NFTKNIGSLIGLEFRDSNFI-----------LNVKNDYR 388
Query: 403 ELQERMVITVEPGCYFIDALLVPAMENESTSKFFNHEVIGRFKDFGGVRIESDVLVTANG 462
++Q + G + ++ ++ + +++ V + +
Sbjct: 389 KIQRGDCFNISFGFNNL--------KDSQSANNY------------ALQLADTVQIPLDE 428
Query: 463 SKN---MTSVPREISDIEAIMAGAPWPSNKTAPSNS 495
++ +T+ + S I +NK S +
Sbjct: 429 TEPPRFLTNYTKAKSQISFYFNNEEEDNNKKKSSPA 464
>1wy2_A XAA-Pro dipeptidase; structural genomics, prolidase, riken
structural genomics/PR initiative, RSGI, hydrolase;
1.70A {Pyrococcus horikoshii} PDB: 1pv9_A
Length = 351
Score = 185 bits (471), Expect = 2e-54
Identities = 82/303 (27%), Positives = 136/303 (44%), Gaps = 63/303 (20%)
Query: 171 ETELNTLHPILSECRVFKSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHH 230
E + ++ + R+ KS+ E+ +I+ A +I+ +A + +++ G KE ++ + + +
Sbjct: 111 IKEFKKVDDVIRDMRIIKSEKEIKIIEKACEIADKAVMAAIEEITEGKKEREV-AAKVEY 169
Query: 231 TYMYGGCRHCSYTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDIT 290
G ++ I A+G SA+ H +D+ E GD+ ++D+GA YQ Y SDIT
Sbjct: 170 LMKMNGAEKPAFDTIIASGYRSALPH----GVASDKRIERGDLVVIDLGALYQHYNSDIT 225
Query: 291 CSFPVNGKFTSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVG 350
+ V G Q IY VL+A + + KPG+ ++ +A II E
Sbjct: 226 RTIVV-GSPNEKQKEIYEIVLEAQKKAVESAKPGITAKELDSIARNIIAE---------- 274
Query: 351 NVDEMMAARLGAVFMPHGLGHFLGIDTHDPGGYPKGTERSKEPGLKSLRTVRELQERMVI 410
G F H LGH +G++ H+ +P+ ++ + L+E MVI
Sbjct: 275 -------YGYGEYF-NHSLGHGVGLEVHE---WPRVSQYDETV----------LREGMVI 313
Query: 411 TVEPGCYFIDALLVPAMENESTSKFFNHEVIGRFKDFGGVRIESDVLVTANGSKNMTSVP 470
T+EPG Y GGVRIE +L+T NGSK +T
Sbjct: 314 TIEPGIYI--------------------------PKIGGVRIEDTILITKNGSKRLTKTE 347
Query: 471 REI 473
RE+
Sbjct: 348 REL 350
>1wn1_A Dipeptidase; prolidase, cobalt(II), structural genomics, riken
structural genomics/proteomics initiative, RSGI,
hydrolase; 2.25A {Pyrococcus horikoshii} PDB: 2how_A
Length = 356
Score = 181 bits (461), Expect = 7e-53
Identities = 72/307 (23%), Positives = 123/307 (40%), Gaps = 64/307 (20%)
Query: 167 MEKFETELNTLHPILSECRVFKSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESM 226
M+ + L ++ E R+ K E+ +++ A+ I+ + E++ +GMKE ++ ++
Sbjct: 111 MKLGKFTFQPLSSLIKELRMIKDKEEVKMMEHASRIADKVFEEILTWDLIGMKEREL-AL 169
Query: 227 FLHHTYMYGGCRHCSYTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYG 286
+ + ++ I A+GEN+A H P +R GD+ +LD GA ++ Y
Sbjct: 170 KIEL-LIRELSDGIAFEPIVASGENAANPH----HEPGERKIRKGDIIILDYGARWKGYC 224
Query: 287 SDITCSFPVNGKFTSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGG 346
SDIT + + G+ IY V A + A++ G+ D+ A ++I +
Sbjct: 225 SDITRTIGL-GELDERLVKIYEVVKDAQESAFKAVREGIKAKDVDSRAREVISK------ 277
Query: 347 VMVGNVDEMMAARLGAVFMPHGLGHFLGIDTHDPGGYPKGTERSKEPGLKSLRTVRELQE 406
A G F H GH LG+D H+ P + L+
Sbjct: 278 -----------AGYGEYF-IHRTGHGLGLDVHE---EPYIGPDGEVI----------LKN 312
Query: 407 RMVITVEPGCYFIDALLVPAMENESTSKFFNHEVIGRFKDFGGVRIESDVLVTANGSKNM 466
M T+EPG Y GGVRIE D++V + +
Sbjct: 313 GMTFTIEPGIYV--------------------------PGLGGVRIEDDIVVDEGKGRRL 346
Query: 467 TSVPREI 473
T RE+
Sbjct: 347 TKAEREL 353
>3cb6_A FACT complex subunit SPT16; peptidase homology domain, histone
binding module, histone H chaperone, PITA-bread fold;
1.84A {Schizosaccharomyces pombe} PDB: 3cb5_A
Length = 444
Score = 183 bits (467), Expect = 7e-53
Identities = 66/500 (13%), Positives = 142/500 (28%), Gaps = 89/500 (17%)
Query: 8 SPPKVPKELYFINREKVLNSLR--QHLTETSRPLHGFVLLQGGEEQTRYCTDHLELFRQE 65
+ ++ + + +L S + + + ++ G + D +
Sbjct: 4 AEYEIDEITFHKRLGILLTSWKNEEDGKTLFQDCDSILVTVGAHD------DTNPYQKST 57
Query: 66 SYFAYLFGVREPGFYGAIDIATGKSILFAPRLPPDYAVWLGKIKPLSYFQEKY----MVN 121
+ +L G P + + I + A L K+
Sbjct: 58 ALHTWLLGYEFPS---TLILLEKHRITILT--SVNKANMLTKLAETKGAAADVNILKRTK 112
Query: 122 MVYYTDEIVGVLQGHYKEPGKPLLFLLHGLNTDSNNFSKPAQFEGMEKFETELNTLHPIL 181
++ + + + K + + FE ++ E L L
Sbjct: 113 DAEENKKLFEKIIEYIRATNKKVGVFPKDKTQGKFINEWDSIFEPVKS-EFNLVDASLGL 171
Query: 182 SECRVFKSDHELALIQFANDISSEAHVEVMK-------KTRVGMKEYQ----MESMFLHH 230
++C K + ELA I+ A+ +S + + + MES+ +
Sbjct: 172 AKCLAIKDEQELANIKGASRVSVAVMSKYFVDELSTYIDQGKKITHSKFSDQMESLIDNE 231
Query: 231 TYMYG----------GCRHCSYTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGA 280
+ YT I +G + + A D GD+ L +G
Sbjct: 232 AFFQTKSLKLGDIDLDQLEWCYTPIIQSGGSYDLKPS----AITDDRNLHGDVVLCSLGF 287
Query: 281 EYQFYGSDITCSFPVNGKFTSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILE 340
Y+ Y S++ ++ + S+Q Y+ ++ + + G D++ +I
Sbjct: 288 RYKSYCSNVGRTYLFDP--DSEQQKNYSFLVALQKKLFEYCRDGAVIGDIYTKILGLIRA 345
Query: 341 SLKKGGVMVGNVDEMMAARLGAVFMPHGLGHFLGIDTHDPGGYPKGTERSKEPGLKSLRT 400
K+ L F+ LG +GI+ + L + +
Sbjct: 346 --KRPD-------------LEPNFV-RNLGAGIGIEFRES------------SLLVNAKN 377
Query: 401 VRELQERMVITVEPGCYFIDALLVPAMENESTSKFFNHEVIGRFKDFGGVRIESDVLVTA 460
R LQ M + + G + N + + + +T
Sbjct: 378 PRVLQAGMTLNLSIGFGNLI----------------NPHPKNSQSKEYALLLIDTIQITR 421
Query: 461 NGSKNMTSVPREISDIEAIM 480
+ T P+ DI
Sbjct: 422 SDPIVFTDSPKAQGDISYFF 441
>4ege_A Dipeptidase PEPE; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, hydrolase; 2.20A
{Mycobacterium ulcerans}
Length = 378
Score = 179 bits (457), Expect = 5e-52
Identities = 65/312 (20%), Positives = 116/312 (37%), Gaps = 65/312 (20%)
Query: 167 MEKFETELNTLHPILSECRVFKSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESM 226
+ +L + R+ K E+ + A H V G E Q+ +
Sbjct: 130 ADALGVLPVLATDVLRQLRMVKEAAEVDALAKAGAAIDRVHARVPAFLVPGRTEAQVAA- 188
Query: 227 FLHHTYMYGGCRHCSYTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQF-Y 285
+ + G ++ I +G + A H +DR + GD+ ++D+G Y+ Y
Sbjct: 189 DIAEAIVAEGHSAVAFV-IVGSGPHGADPH----HGYSDRKLQVGDIVVVDIGGTYEPGY 243
Query: 286 GSDITCSFPVNGKFTSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKG 345
SD T ++ + G + D + Y+A+ +A A ++A++PGV + A ++ +
Sbjct: 244 YSDSTRTYSI-GDPSPDVAQQYSALQRAQRAAVDAVRPGVTAAQVDAAARDVLAD----- 297
Query: 346 GVMVGNVDEMMAARLGAVFMPHGLGHFLGIDTHDPGGYPKGTERSKEPGLKSLRTVRELQ 405
A L F H GH +G+ H+ P ++ P L
Sbjct: 298 ------------AGLAEYF-VHRTGHGIGLCVHEE---PYIVAGNELP----------LV 331
Query: 406 ERMVITVEPGCYFIDALLVPAMENESTSKFFNHEVIGRFKDFGGVRIESDVLVTANGSKN 465
M ++EPG Y P G RIE V+VT NG+ +
Sbjct: 332 AGMAFSIEPGIY------FP--------------------GRWGARIEDIVVVTENGALS 365
Query: 466 MTSVPREISDIE 477
+ + P E+ +
Sbjct: 366 VNNRPHELMVVP 377
>1chm_A Creatine amidinohydrolase; creatinase; 1.90A {Pseudomonas putida}
SCOP: c.55.2.1 d.127.1.1
Length = 401
Score = 166 bits (423), Expect = 6e-47
Identities = 51/319 (15%), Positives = 98/319 (30%), Gaps = 60/319 (18%)
Query: 162 AQFEGMEKF--ETELNTLHPILSECRVFKSDHELALIQFANDISSEAHVEVMKKTRVGMK 219
+ + + EL + R+ KS E +I+ I+ V++ +
Sbjct: 130 QNRDKLAARYPDAELVDVAAACMRMRMIKSAEEHVMIRHGARIADIGGAAVVEALGDQVP 189
Query: 220 EYQM-----ESMFLHHTYMYGGCRHCSYTCICATGENSAVLHYGHAAAPNDRTFEDGDMA 274
EY++ ++M + +G N+ H R GD+
Sbjct: 190 EYEVALHATQAMVRAIADTFEDVELMDTWTWFQSGINTDGAH----NPVTTRKVNKGDIL 245
Query: 275 LLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLA 334
L+ Y + + + + + D ++ ++ H A + +KPG D+ +
Sbjct: 246 SLNCFPMIAGYYTALERTLFL-DHCSDDHLRLWQVNVEVHEAGLKLIKPGARCSDIAREL 304
Query: 335 EKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGLGHFLGIDTHDPGGYPKGTERSKEPG 394
+I L+ + G GH G +H G R
Sbjct: 305 NEIFLK-----------------HDVLQYR-TFGYGHSFGTLSHYYGREAGLELREDIDT 346
Query: 395 LKSLRTVRELQERMVITVEPGCYFIDALLVPAMENESTSKFFNHEVIGRFKDFGGVRIES 454
L+ MV+++EP + L GG R
Sbjct: 347 --------VLEPGMVVSMEPMIMLPEGL----------------------PGAGGYREHD 376
Query: 455 DVLVTANGSKNMTSVPREI 473
++V NG++N+T P
Sbjct: 377 ILIVNENGAENITKFPYGP 395
>1kp0_A Creatine amidinohydrolase; alpha betal, 3-layer(ABA) sandwich;
2.70A {Actinobacillus} SCOP: c.55.2.1 d.127.1.1
Length = 402
Score = 160 bits (408), Expect = 9e-45
Identities = 50/320 (15%), Positives = 95/320 (29%), Gaps = 62/320 (19%)
Query: 162 AQFEGMEKF--ETELNTLHPILSECRVFKSDHELALIQFANDISSEAHVEVMKKTRVGMK 219
+ZK TE + + RV KS E LI+ IS G+
Sbjct: 130 BHRRZLZKALPGTEFVDVGZPVMWZRVIKSSEEZBLIRZGARISDIGGAATAAAISAGVP 189
Query: 220 EYQMESMFLHHTYMYGGCRHCSY------TCICATGENSAVLHYGHAAAPNDRTFEDGDM 273
EY++ ++ + R Y +G N+ H BR Z GD+
Sbjct: 190 EYEV-AIATTBAMVRZIARBFPYVELMDTWIWFQSGINTDGAH----NPVTBRVVZRGDI 244
Query: 274 ALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKL 333
L+ Y + + + + + I+ H + +KPG D+
Sbjct: 245 LSLNCFPMIFGYYTALERTLFL-ZZVBDASLZIWZKNTAVHRRGLZLIKPGARCKDIASE 303
Query: 334 AEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGLGHFLGIDTHDPGGYPKGTERSKEP 393
+ Z L G GH G+ H Y +
Sbjct: 304 LNBMYRZ-----------------WDLLRYR-TFGYGHSFGVLBH---YYGREAGVELRE 342
Query: 394 GLKSLRTVRELQERMVITVEPGCYFIDALLVPAMENESTSKFFNHEVIGRFKDFGGVRIE 453
++++ L+ MV+++EP + GG R
Sbjct: 343 DIZTV-----LEPGMVVSMEPMVMBPEGE----------------------PGAGGYREH 375
Query: 454 SDVLVTANGSKNMTSVPREI 473
+++ N ++N+T P
Sbjct: 376 DILVIKENBTENITGFPFGP 395
>4b28_A Metallopeptidase, family M24, putative; lyase,
imethylsulfonioproionate, acrylate, dimethylsulfide;
2.15A {Roseobacter denitrificans och 114}
Length = 470
Score = 132 bits (332), Expect = 9e-34
Identities = 59/395 (14%), Positives = 117/395 (29%), Gaps = 70/395 (17%)
Query: 86 ATGKSILFAPRLPPDYAVWLGKIKPLSYFQEKYMVNMVYYTDEIVGVLQGHYKEPGKPLL 145
A G +++ + + +L + PL Q + + V V + + LL
Sbjct: 131 ADGYMVMWDYK----NSPFLSEFNPLVREQRAGADLFYFDRGDKVDVAADVFANEVRILL 186
Query: 146 F-LLHGLNTDSNNFSKPAQFEGMEKFETELNTLHPILSECRVFKSDHELALIQFANDISS 204
GL + + ++ E+ + + R K E+ ++ A+
Sbjct: 187 RDHAPGLRRLAVDKVMLHGLRALQAQGFEIMDGEEVTEKARSVKGPDEIRAMRCASHACE 246
Query: 205 EAHVEVMKKTRVGMKEYQMESMFL---HHTYMYGGCRHCSYTCICATGENSAVLHYGHAA 261
A ++ R + + + H+ T + A+G S
Sbjct: 247 VAVRKMEDFARSKVGDGVTCENDIWAILHSENVRRGGEWIETRLLASGPRSNPWFQ---- 302
Query: 262 APNDRTFEDGDMALLDMGAE-YQFYGSDITCSFPVNGKFTSDQSLIYNAVL--KAHNAVI 318
R + ++ D +DI+ S+ + G +IY + +
Sbjct: 303 ECGPRVCQRNEIISFDTDLVGAYGICTDISRSWWI-GDQKPRADMIYAMQHGVEHIRTNM 361
Query: 319 NAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGLGHFLGIDTH 378
+KPGV ++ A +L+ A+ L H +G+
Sbjct: 362 EMLKPGVMIPELS--ANTHVLD-----------------AKFQKQK-YGCLMHGVGLCDE 401
Query: 379 DPG-GYPKGTERSKEPGLKSLRTVRELQERMVITVEPGCYFIDALLVPAMENESTSKFFN 437
P YP L+ M + VE
Sbjct: 402 WPLVAYPDHAVAGAYDY--------PLEPGMTLCVEALISEEG----------------- 436
Query: 438 HEVIGRFKDFGGVRIESDVLVTANGSKNMTSVPRE 472
G F +++E VL+T +G +N+T P +
Sbjct: 437 ----GDF----SIKLEDQVLITEDGYENLTKYPFD 463
>3ctz_A XAA-Pro aminopeptidase 1; PITA-bread fold, alternative splicing,
cytoplasm, hydrolase, manganese, metal-binding,
metalloprotease, protease; HET: P6G; 1.60A {Homo
sapiens}
Length = 623
Score = 66.9 bits (164), Expect = 6e-12
Identities = 58/230 (25%), Positives = 89/230 (38%), Gaps = 65/230 (28%)
Query: 241 SYTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGS-DITCSFPVNGKF 299
S+ I +TG A++HY +RT ++ L+D GA+Y G+ D+T +
Sbjct: 380 SFPTISSTGPTGAIIHY-APVPETNRTLSLDEVYLIDSGAQY-KDGTTDVTRTMHF-ETP 436
Query: 300 TSDQSLIYNAVLKAHNAVINAMKP-GVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAA 358
T+ + + VLK H AV A+ P G + A +L G +D
Sbjct: 437 TAYEKECFTYVLKGHIAVSAAVFPTGTKGHLLDSFARS----ALWDSG-----LD----- 482
Query: 359 RLGAVFMP---HGLGHFLGIDTHDPGGYPKGTERSKEPGLKSLRTVRELQERMVITVEPG 415
++ HG+G FL + H+ P G K+ L+ M++T EPG
Sbjct: 483 -----YLHGTGHGVGSFLNV--HEG---PCG------ISYKTFSDE-PLEAGMIVTDEPG 525
Query: 416 CYFIDALLVPAMENESTSKFFNHEVIGRFKDFGGVRIESDVLVTANGSKN 465
Y D G F G+RIE+ VLV +K
Sbjct: 526 YY-ED---------------------GAF----GIRIENVVLVVPVKTKY 549
>2nw5_A Methionine aminopeptidase 2; metap2, structural genomics, PSI-2,
protein structure initiative; 2.18A {Encephalitozoon
cuniculi} PDB: 3cmk_A* 3d0d_A* 3fm3_A 3fmq_A* 3fmr_A*
Length = 360
Score = 58.3 bits (141), Expect = 2e-09
Identities = 23/157 (14%), Positives = 44/157 (28%), Gaps = 15/157 (9%)
Query: 188 KSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQM------ESMFLHHTYMYGGCRHCS 241
L + A + A V R G+ ++ + L G
Sbjct: 42 TESDILQDARRAAEAHRRARYRVQSIVRPGITLLEIVRSIEDSTRTLLKGERNNGIGFP- 100
Query: 242 YTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTS 301
+ NS HY D ++ D+ +D G D +
Sbjct: 101 -AGMSM---NSCAAHYTVNPGEQDIVLKEDDVLKIDFGTHSDGRIMDSAFTVAFKENL-- 154
Query: 302 DQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKII 338
+ L+ A + I ++ V D+ + ++I
Sbjct: 155 -EPLL-VAAREGTETGIKSLGVDVRVCDIGRDINEVI 189
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 58.4 bits (141), Expect = 3e-09
Identities = 39/237 (16%), Positives = 69/237 (29%), Gaps = 42/237 (17%)
Query: 188 KSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQM----ESM---FLHHTYMYGGCRHC 240
S+ + A + + VM + GM ++ E + + G
Sbjct: 161 ASEEIWNDFREAAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSRKLIKENGLNAGLAFP 220
Query: 241 SYTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFT 300
T N+ HY A + + D+ +D G D + N K+
Sbjct: 221 --TGCSL---NNCAAHY-TPNAGDTTVLQYDDICKIDFGTHISGRIIDCAFTVTFNPKY- 273
Query: 301 SDQSLIYNAVLKAHNAVINAMKPGVCWVDM-HKLAEKIILESLKKGGVM--VGNVDEMMA 357
+L+ AV A N I V D+ + E + ++ G V + +
Sbjct: 274 --DTLL-KAVKDATNTGIKCAGIDVRLCDVGEAIQEVMESYEVEIDGKTYQVKPIRNL-- 328
Query: 358 ARLGAVFMPHGLGHFLGIDTHDPGGYPKGTERSKEPGLKSLRTVRELQERMVITVEP 414
GH +G P +K R ++E V +E
Sbjct: 329 -----------NGHSIGQYRIH--------AGKTVPIVKGGEATR-MEEGEVYAIET 365
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.9 bits (139), Expect = 5e-09
Identities = 67/492 (13%), Positives = 133/492 (27%), Gaps = 190/492 (38%)
Query: 8 SPPKVPKELYFINREKVLNSLRQHLTETSRPLHGFVLLQGGEEQTRYCTDHLELFRQESY 67
K Y ++R + LRQ L E RP VL+ G
Sbjct: 122 DNQVFAK--YNVSRLQPYLKLRQALLEL-RP-AKNVLIDGV------------------- 158
Query: 68 FAYLFGVREPGFYGAIDIATGKSILFAPRLPPDYAVWLGKIKPLSYFQEKYMVNMVYYTD 127
G GK+ + LSY + M +++
Sbjct: 159 ---------LGS--------GKTWVALDVC-------------LSYKVQCKMDFKIFW-- 186
Query: 128 EIVGVLQGHYKEPG---KPLLFLLHGL--NTDSNNFSKPAQFEGMEKFETELNTL----- 177
+ + + P + L LL+ + N S + + + EL L
Sbjct: 187 --LNL--KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242
Query: 178 HP----ILSE-------------CRVFKSDHELALI-----QFANDISSEAHVEV-MKKT 214
+ +L C++ L+ Q + +S+ + +
Sbjct: 243 YENCLLVLLNVQNAKAWNAFNLSCKI--------LLTTRFKQVTDFLSAATTTHISLDHH 294
Query: 215 RVGMKEYQMESMFLHHTYMYGGCR--------------HCSYTCICATGENSAVLH---- 256
+ + +++S+ L Y CR S I A +
Sbjct: 295 SMTLTPDEVKSLLLK----YLDCRPQDLPREVLTTNPRRLS---IIA-----ESIRDGLA 342
Query: 257 ----YGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCS-FPVNGKFTSDQSLIYNAVL 311
+ H T + + +L+ + + S FP + + +L
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR---LSVFPPSAHIPTI-------LL 392
Query: 312 KAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGLGH 371
+ W D+ K +++ L K ++ E + + +
Sbjct: 393 ------------SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE-STISI------PSI-Y 432
Query: 372 FLGIDTHDPGGYPKGTERSKEPGLKSLRTVRELQERMVITVEPGCYFIDALLVPAMENES 431
+ K +L R + + I P + D L+ P ++
Sbjct: 433 LE--------------LKVKLENEYALH--RSIVDHYNI---PKTFDSDDLIPPYLDQ-- 471
Query: 432 TSKFFNHEVIGR 443
F++H IG
Sbjct: 472 --YFYSH--IGH 479
Score = 37.9 bits (87), Expect = 0.008
Identities = 38/221 (17%), Positives = 72/221 (32%), Gaps = 51/221 (23%)
Query: 1 MASSSSLSPPKVPKE-LYFINREKVLNSLRQHLTETSRPLHGFVLLQGGEEQTRYCTDHL 59
+ S + K PKE I + L+ L E LH ++ + +D L
Sbjct: 411 LHKYSLVE--KQPKESTISIP--SIYLELKVKL-ENEYALHR-SIVDHYNIPKTFDSDDL 464
Query: 60 ELFRQESYFAYLFGVREPGFYGAIDIATGKSILFAPRLPPDYAVWLG-KIKPLSYFQEKY 118
+ YF G + +I + + + D+ +L KI+ +
Sbjct: 465 IPPYLDQYFYSHIG------HHLKNIEHPERMTLFRMVFLDFR-FLEQKIR-----HDST 512
Query: 119 MVNMVYYTDEIVGVLQGHYKEPGKPLLFLLHGLNTDSNNFSKPAQFEGMEKFETELNTLH 178
N + L+ YK ++ D++ K+E +N +
Sbjct: 513 AWNASGSILNTLQQLK-FYKP------YI-----CDNDP-----------KYERLVNAIL 549
Query: 179 PILSEC--RVFKSDHELALIQFA-----NDISSEAHVEVMK 212
L + + S + L++ A I EAH +V +
Sbjct: 550 DFLPKIEENLICSKY-TDLLRIALMAEDEAIFEEAHKQVQR 589
Score = 33.7 bits (76), Expect = 0.17
Identities = 25/196 (12%), Positives = 52/196 (26%), Gaps = 60/196 (30%)
Query: 121 NMVYYTDEIV-------GVLQGHYKEPGKPLLFLLHGLNTDSNNFSKPAQFEGMEKFETE 173
+++ +V +++ KE + + E K E
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQPKE----STISIPSI-----------YLELKVKLE-N 441
Query: 174 LNTLHPILSEC----RVFKSDHELALIQ---FANDISSEAHVEVMKKTRVGMKEYQMESM 226
LH + + + F SD + F + I H +K + +
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH--H---LKNIEHPERMTLFRMV 496
Query: 227 FLHHTYMYGGCRHCSYTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYG 286
FL ++ RH S + +L+ + +FY
Sbjct: 497 FLDFRFLEQKIRHDSTAWNASGS-------------------------ILNTLQQLKFYK 531
Query: 287 SDITCSFPVNGKFTSD 302
I + P + +
Sbjct: 532 PYICDNDPKYERLVNA 547
>1xgs_A Methionine aminopeptidase; hyperthermophIle; 1.75A {Pyrococcus
furiosus} SCOP: a.4.5.25 d.127.1.1 PDB: 1xgm_A 1xgn_A
1xgo_A 1wkm_A 2dfi_A
Length = 295
Score = 49.9 bits (120), Expect = 6e-07
Identities = 36/224 (16%), Positives = 69/224 (30%), Gaps = 38/224 (16%)
Query: 192 ELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCSY-TCICATGE 250
+ + A +I+ + + +K R GM ++ GG ++ +
Sbjct: 2 DTEKLMKAGEIAKKVREKAIKLARPGMLLLELAESIEKMIMELGG--KPAFPVNLSI--- 56
Query: 251 NSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYNAV 310
N HY + ++GD +D+G + +D + V + L+ A
Sbjct: 57 NEIAAHY-TPYKGDTTVLKEGDYLKIDVGVHIDGFIADTAVTVRVGMEE---DELM-EAA 111
Query: 311 LKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGLG 370
+A NA I+ + GV ++ K E I + + H +
Sbjct: 112 KEALNAAISVARAGVEIKELGKAIENEI-RKRG-----FKPIVNLSG---------HKIE 156
Query: 371 HFLGIDTHDPGGYPKGTERSKEPGLKSLRTVRELQERMVITVEP 414
+ H P L+E V +EP
Sbjct: 157 RY---KLHAGISIPNIYRPHDNY---------VLKEGDVFAIEP 188
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine
aminopeptidase, PITA-bread, transcri; 1.60A {Homo
sapiens} PDB: 2v6c_A
Length = 401
Score = 49.8 bits (119), Expect = 1e-06
Identities = 38/244 (15%), Positives = 73/244 (29%), Gaps = 45/244 (18%)
Query: 188 KSDHELALIQFANDISSEAHVEVMKKTRVGMK---------EYQME---SMFLHHTYMYG 235
D + + DI++ +++ + G+ ME +F M
Sbjct: 20 AEDLVVTKYKMGGDIANRVLRSLVEASSSGVSVLSLCEKGDAMIMEETGKIFKKEKEMKK 79
Query: 236 GCRHCSYTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPV 295
G T I N+ V H+ + D ++GD+ +D+G + +++ +F V
Sbjct: 80 GIAFP--TSISV---NNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIANVAHTFVV 134
Query: 296 NGKFTSDQS-----LIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVG 350
+ + + +I A A + +KPG V
Sbjct: 135 DVAQGTQVTGRKADVI-KAAHLCAEAALRLVKPGNQNTQ-------------------VT 174
Query: 351 NVDEMMAARLGAVFMPHGLGHFLGIDTHDPGGYPKGTERSKEPGLKSLRTVRELQERMVI 410
+A + L H L D K ++ K E + V
Sbjct: 175 EAWNKVAHSFNCTPIEGMLSHQLKQHVIDGE---KTIIQNPTDQQKKDHEKAEFEVHEVY 231
Query: 411 TVEP 414
V+
Sbjct: 232 AVDV 235
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.3 bits (99), Expect = 4e-04
Identities = 56/331 (16%), Positives = 100/331 (30%), Gaps = 121/331 (36%)
Query: 73 GVREPG----FYGAIDIATGKSILFAPRLPPDYAVWLGKIKPLSYFQEKYMVNMVYYTDE 128
G +E G Y A + + + A ++F++ Y +++ +
Sbjct: 1625 GSQEQGMGMDLYKTSKAA--QDVW-------NRA--------DNHFKDTYGFSIL----D 1663
Query: 129 IVGVLQGHYKEPGKPLLFLLHGL-------NTDSNNFSKPAQFEGMEKFETELNTLHPIL 181
IV L G N + F +G K E ++
Sbjct: 1664 IV-------INNPVNLTIHFGGEKGKRIRENYSAMIFETIV--DGKLKTEKIFKEINEHS 1714
Query: 182 SECRVFKSDHE-LALIQF---ANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGC 237
+ F+S+ L+ QF A + +A E +K G+ ++ F G
Sbjct: 1715 TSY-TFRSEKGLLSATQFTQPALTLMEKAAFEDLKSK--GLI--PADATF-------AG- 1761
Query: 238 RHCSYTCICATGENSA---------------VLHY-G---HAAAPNDRT-FEDGDMALLD 277
H S GE +A V+ Y G A P D + M ++
Sbjct: 1762 -H-SL------GEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAIN 1813
Query: 278 MG--------AEYQFYGSDIT------CSFPVNGKFTSDQSLIYNA-----V----LKAH 314
G Q+ + VN YN V L+A
Sbjct: 1814 PGRVAASFSQEALQYVVERVGKRTGWLVE-IVN----------YNVENQQYVAAGDLRAL 1862
Query: 315 NAVINAMKP-GVCWVDMHKLAEKIILESLKK 344
+ V N + + +D+ +L + + LE ++
Sbjct: 1863 DTVTNVLNFIKLQKIDIIELQKSLSLEEVEG 1893
Score = 33.5 bits (76), Expect = 0.21
Identities = 34/185 (18%), Positives = 49/185 (26%), Gaps = 72/185 (38%)
Query: 215 RVGM-KE-YQMESMF--------LHHTYMYGGCRHCSYTCICATGENSAVLHYGHAAAPN 264
GM + Y+ H YG S I + +H+G
Sbjct: 1628 EQGMGMDLYKTSKAAQDVWNRADNHFKDTYGF----SILDIVINNPVNLTIHFGGEKGKR 1683
Query: 265 DR------TFE---DGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYN------A 309
R FE DG + + E + + T F S++ L+ A
Sbjct: 1684 IRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYT--------FRSEKGLLSATQFTQPA 1735
Query: 310 VLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGL 369
+ L EK E LK G++ D A
Sbjct: 1736 LT---------------------LMEKAAFEDLKSKGLI--PADATFA------------ 1760
Query: 370 GHFLG 374
GH LG
Sbjct: 1761 GHSLG 1765
>3tav_A Methionine aminopeptidase; ssgcid, seattle structural genomics
center for infectious DI protease, hydrolase; 2.15A
{Mycobacterium abscessus}
Length = 286
Score = 38.7 bits (91), Expect = 0.003
Identities = 51/251 (20%), Positives = 79/251 (31%), Gaps = 66/251 (26%)
Query: 186 VFKSDHELALIQFANDISSEAHVEVMKKTRVGM-------------KEYQMESMFLHHTY 232
++ EL + A I A V V + G+ +E FL
Sbjct: 33 EQRTPGELDAMAAAGSIVGAALVAVRDAAKAGVSTLELDQVAESVIREAGAVPSFLG--- 89
Query: 233 MYGGCRHCSYTCICATGENSAVLHYGHAAAPND-RTFEDGDMALLDMGAEYQFYGSDITC 291
Y G IC++ N V+H P+ DGD+ +D GA + D
Sbjct: 90 -YHGFPA----SICSS-VNDQVVH----GIPSATAVLADGDLVSIDCGAILDGWHGDSAW 139
Query: 292 SFPVNGKFTS-DQSLI---YNAVLKAHNAVINAMKPGVCWVDM----HKLAEKIILESLK 343
+F V G D++L ++ I AM PG D+ + +
Sbjct: 140 TFAV-GTVIPSDEALSEATRLSMEAG----IAAMIPGNRLTDVSHAIELGTRAAEKQFDR 194
Query: 344 KGGVMVGNVDEMMAARLGAVFMPHGLGHFLGIDTHDPGGYPKGTERSKEPGLKSLRTVRE 403
G+ VD + HG+G + H P E + G
Sbjct: 195 AFGI----VDG---------YGGHGIGRSM----HLDPFLPN--EGAPGKGPL------- 228
Query: 404 LQERMVITVEP 414
L V+ +EP
Sbjct: 229 LAVGSVLAIEP 239
>3tb5_A Methionine aminopeptidase; hydrolase, metalloprotease, enter
feacalis; HET: CIT; 2.30A {Enterococcus faecalis}
Length = 264
Score = 35.6 bits (83), Expect = 0.023
Identities = 27/152 (17%), Positives = 57/152 (37%), Gaps = 31/152 (20%)
Query: 188 KSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYM-----------YGG 236
KS E+ ++ + ++ ++ H + + G+ + +E ++ Y G
Sbjct: 5 KSPREIEMMDESGELLADVHRHLRTFIKPGITSWDIEV--FVRDFIESHGGVAAQIGYEG 62
Query: 237 CRHCSYTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVN 296
++ C N + H P + +DGD+ +DM + + SD S+ V
Sbjct: 63 YKYA----TC-CSINDEICH----GFPRKKVLKDGDLIKVDMCVDLKGAISDSCWSYVV- 112
Query: 297 GKFTSD-QSLI---YNAVLKAHNAVINAMKPG 324
G+ T + L+ A+ I + G
Sbjct: 113 GESTPEIDRLMEVTKKALYLG----IEQAQVG 140
>1o0x_A Methionine aminopeptidase; TM1478, structural genomics, JCSG, PSI,
protein structure initiative, joint center for
structural genomics; 1.90A {Thermotoga maritima} SCOP:
d.127.1.1
Length = 262
Score = 32.1 bits (74), Expect = 0.37
Identities = 29/120 (24%), Positives = 50/120 (41%), Gaps = 23/120 (19%)
Query: 188 KSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYM-----------YGG 236
K+ E+ ++ A + A EV K G + +E+ L YGG
Sbjct: 17 KTPSEIEKMKKAGKAVAVALREVRKVIVPGKTAWDVET--LVLEIFKKLRVKPAFKGYGG 74
Query: 237 CRHCSYTCICATGENSAVLHYGHAAAPN-DRTFEDGDMALLDMGAEYQFYGSDITCSFPV 295
++ TC+ N V+H P ++ F++GD+ +D+GA YQ D ++ V
Sbjct: 75 YKYA--TCVSV---NEEVVH----GLPLKEKVFKEGDIVSVDVGAVYQGLYGDAAVTYIV 125
>2i47_A ADAM 17; TACE-inhibitor complex, hydrolase; HET: INN KGY; 1.90A
{Homo sapiens} SCOP: d.92.1.10 PDB: 3g42_A*
Length = 288
Score = 31.6 bits (71), Expect = 0.59
Identities = 16/71 (22%), Positives = 24/71 (33%), Gaps = 2/71 (2%)
Query: 324 GVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGLGHFLGIDTHDPGGY 383
GVC + L G N + + + + H LGH G + HDP G
Sbjct: 152 GVCP-KAYYSPVGKKNIYLNSGLTSTKNYGKTILTKEADLVTTHELGHNFGAE-HDPDGL 209
Query: 384 PKGTERSKEPG 394
+ + G
Sbjct: 210 AECAPNEDQGG 220
>1qxy_A Methionyl aminopeptidase; PITA bread fold, hydrolase; HET: M2C;
1.04A {Staphylococcus aureus} SCOP: d.127.1.1 PDB:
1qxw_A* 1qxz_A*
Length = 252
Score = 30.9 bits (71), Expect = 0.83
Identities = 29/153 (18%), Positives = 52/153 (33%), Gaps = 32/153 (20%)
Query: 188 KSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYM-----------YGG 236
K++ EL ++ I ++ + T+ G+ ++++ +
Sbjct: 4 KTEEELQALKEIGYICAKVRNTMQAATKPGITTKELDN--IAKELFEEYGAISAPIHDEN 61
Query: 237 CRHCSYTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVN 296
C N V H P+ R +GD+ +D+ A Y +D SF V
Sbjct: 62 FPGQ----TC-ISVNEEVAH----GIPSKRVIREGDLVNIDVSALKNGYYADTGISFVV- 111
Query: 297 GKFTSD--QSLI---YNAVLKAHNAVINAMKPG 324
G+ Q + A A I +KPG
Sbjct: 112 GESDDPMKQKVCDVATMAFENA----IAKVKPG 140
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 30.5 bits (68), Expect = 1.1
Identities = 17/76 (22%), Positives = 26/76 (34%), Gaps = 11/76 (14%)
Query: 185 RVFKSDHELALIQFANDISSEAHVEVMKKTRVGMK-----EYQMESMFLHHTYMYGGCRH 239
++ +D I AN + + + K M + + GGC H
Sbjct: 300 SLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQPAGKNRCGDNNGGCTH 359
Query: 240 -C-----SYTCICATG 249
C +YTC C TG
Sbjct: 360 LCLPSGQNYTCACPTG 375
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA
complex, mitosis, cell division, kinetochore microtubule
attachment; 3.32A {Homo sapiens}
Length = 101
Score = 28.5 bits (63), Expect = 1.8
Identities = 16/86 (18%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 151 LNTDSNNFSKPAQFEGMEKFETELNTLHPILSECRVFKSDHELALIQFANDISSEAHVEV 210
L+ ++ + E + + + L+ + SE + K D + L + + ++ ++
Sbjct: 18 LDCETARLQRALDGEESDFEDYPMRILYDLHSEVQTLKDDINILLDK--ARLENQEGIDF 75
Query: 211 MKKTRVGMKEYQMESMFLHHTY-MYG 235
+K T+V M++ M+ M + + YG
Sbjct: 76 IKATKVLMEKNSMDIMKIREYFQKYG 101
>2ddf_A ADAM 17; hydrolase; HET: INN CIT; 1.70A {Homo sapiens} PDB: 2fv5_A*
3l0v_A* 3kme_A* 3l0t_A* 3kmc_A* 3le9_A* 3lea_A* 3lgp_A*
3o64_A* 3ewj_A* 3edz_A* 3e8r_A* 2fv9_A* 1zxc_A* 2oi0_A*
3b92_A* 2a8h_A* 1bkc_A* 3cki_A 1bkc_I* ...
Length = 257
Score = 29.4 bits (65), Expect = 2.8
Identities = 16/71 (22%), Positives = 24/71 (33%), Gaps = 2/71 (2%)
Query: 324 GVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGLGHFLGIDTHDPGGY 383
GVC + L G N + + + + H LGH G + HDP G
Sbjct: 146 GVC-PKAYYSPVGKKNIYLNSGLTSTKNYGKTILTKEADLVTTHELGHNFGAE-HDPDGL 203
Query: 384 PKGTERSKEPG 394
+ + G
Sbjct: 204 AECAPNEDQGG 214
>1r3d_A Conserved hypothetical protein VC1974; structural genomics,
hydrolase, NYSGXRC, NEW YORK SGX research center for
structural genomics, PSI; 1.90A {Vibrio cholerae} SCOP:
c.69.1.35
Length = 264
Score = 28.4 bits (64), Expect = 4.6
Identities = 8/25 (32%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 136 HYKEPG--KPLLFLLHGLNTDSNNF 158
H+ +P PL+ L+HGL ++
Sbjct: 8 HFAKPTARTPLVVLVHGLLGSGADW 32
>3c5v_A PME-1, protein phosphatase methylesterase 1; demethylase, PP2A,
alternative splicing, hydrolase, phosphoprotein, serine
esterase; 2.00A {Homo sapiens} PDB: 3c5w_P
Length = 316
Score = 28.3 bits (63), Expect = 5.4
Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 5/48 (10%)
Query: 107 KIKPLS---YFQEKYMVNMVYYTDEIVGVLQGHYKEPGKPLLFLLHGL 151
P+ YF+ V + T + + + P+L LLHG
Sbjct: 2 DFSPVPWSQYFESMEDVEVENETGKDT--FRVYKSGSEGPVLLLLHGG 47
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation,
alakloid biosynt oxidoreductase, alkaloid metabolism;
HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica}
PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 3fw8_A* 3fw7_A*
3fwa_A*
Length = 495
Score = 28.7 bits (64), Expect = 5.5
Identities = 8/46 (17%), Positives = 13/46 (28%), Gaps = 13/46 (28%)
Query: 345 GGVMVGNVDEMMAARLGAVFMPHGL-------GHFLGIDTHDPGGY 383
G +G + + + G GH G GG+
Sbjct: 116 SGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISG------GGF 155
>3e3x_A BIPA; MCSG,PSI2, structural genomics, protein struct initiative,
midwest center for structural genomics, GTP-BIN
nucleotide-binding; HET: MLZ MLY; 1.95A {Vibrio
parahaemolyticus}
Length = 332
Score = 28.3 bits (63), Expect = 6.3
Identities = 14/77 (18%), Positives = 28/77 (36%)
Query: 348 MVGNVDEMMAARLGAVFMPHGLGHFLGIDTHDPGGYPKGTERSKEPGLKSLRTVRELQER 407
++G E M G+ + H H+ + G G + G + LQER
Sbjct: 175 LIGFQTEFMTLTSGSGLLYHTFDHYGPHXGGNIGQRVNGVLIANAAGKALTNALFNLQER 234
Query: 408 MVITVEPGCYFIDALLV 424
+ + G + +++
Sbjct: 235 GRLFIGHGVEVYEGMVI 251
>2h1i_A Carboxylesterase; structural genomics, PSI-2, protein struct
initiative, midwest center for structural genomics,
MCSG, H; HET: MSE; 2.80A {Bacillus cereus} SCOP:
c.69.1.14
Length = 226
Score = 27.9 bits (62), Expect = 6.4
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 138 KEPGKPLLFLLHGLNTDSNNF 158
K+ KP+L LLHG + +
Sbjct: 34 KDTSKPVLLLLHGTGGNELDL 54
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 28.6 bits (64), Expect = 6.4
Identities = 11/44 (25%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 5 SSLSPPKVP-KELYFINREKVLNSLRQHLTETSRPLHGFVLLQG 47
+ L VP + + F+ R+K++++++Q L + + G+V + G
Sbjct: 112 TVLCEGGVPQRPVIFVTRKKLVHAIQQKLWKLNGE-PGWVTIYG 154
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL
receptor-like protein, dickko YWTD B-propeller,
signaling protein; HET: NAG; 2.80A {Homo sapiens}
Length = 619
Score = 28.2 bits (62), Expect = 6.5
Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 9/74 (12%)
Query: 185 RVFKSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMY---GGCRH-C 240
V+ +D + I+ + S+E V + + + + + GGC H C
Sbjct: 533 YVYWTDWQRRSIERVHKRSAEREVIIDQLPDLMGLKATNVHRVIGSNPCAEENGGCSHLC 592
Query: 241 -----SYTCICATG 249
C C G
Sbjct: 593 LYRPQGLRCACPIG 606
>3i6y_A Esterase APC40077; lipase, structural genomics, PSI-2, PR structure
initiative, midwest center for structural genomic
hydrolase; HET: MSE; 1.75A {Oleispira antarctica} PDB:
3s8y_A
Length = 280
Score = 28.0 bits (62), Expect = 7.5
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 136 HYKEPGK-PLLFLLHGLNTDSNNFSKPAQFE 165
K P+L+ L GL NF + A +
Sbjct: 40 QASTGAKVPVLYWLSGLTCSDENFMQKAGAQ 70
>1vk3_A Phosphoribosylformylglycinamidine synthase II; TM1246, structural
genomics, JCSG, PSI, protein structure initiative; 2.15A
{Thermotoga maritima} SCOP: d.79.4.1 d.79.4.1 d.139.1.1
d.139.1.1 PDB: 3d54_A* 2hs3_A* 2hs0_A* 2hs4_A* 2hru_A*
2hry_A*
Length = 615
Score = 28.1 bits (63), Expect = 8.0
Identities = 9/54 (16%), Positives = 14/54 (25%), Gaps = 15/54 (27%)
Query: 403 ELQERMVITVEPGCYFIDALLVPAMENESTSKFFNHE----VIGRFKDFGGVRI 452
E QERM + P + H V+ + R+
Sbjct: 292 ESQERMAVVTSPQK-----------ASRILEIARKHLLFGDVVAEVIEEPVYRV 334
>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein;
gamma-hydroxybutyrate dehydrogenase, succinic
semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A
{Geobacter sulfurreducens}
Length = 287
Score = 27.9 bits (63), Expect = 8.6
Identities = 9/45 (20%), Positives = 17/45 (37%), Gaps = 4/45 (8%)
Query: 309 AVLKAHNAVINAMKPGVCWVDMH----KLAEKIILESLKKGGVMV 349
V N V+ + G ++DM + + I +GG +
Sbjct: 73 EVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGRFL 117
>2w15_A Zinc metalloproteinase BAP1; hydrolase inhibitor complex,
metal-binding, zinc-depending, metalloprotease,
metalloproteinase/inhibitor complex; HET: WR2; 1.05A
{Bothrops asper} PDB: 2w12_A* 2w13_A* 2w14_A* 1nd1_A
3gbo_A
Length = 202
Score = 27.3 bits (61), Expect = 8.6
Identities = 13/21 (61%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 362 AVFMPHGLGHFLGIDTHDPGG 382
AV M H LGH LGI HD G
Sbjct: 137 AVTMAHELGHNLGI-HHDTGS 156
>3ac6_A Phosphoribosylformylglycinamidine synthase 2; purine metabolism,
ATP-binding, ligase, nucleotide-binding, biosynthesis;
HET: ADP; 2.35A {Thermus thermophilus} PDB: 3viu_A*
Length = 725
Score = 28.0 bits (63), Expect = 8.6
Identities = 11/54 (20%), Positives = 15/54 (27%), Gaps = 15/54 (27%)
Query: 403 ELQERMVITVEPGCYFIDALLVPAMENESTSKFFNHE----VIGRFKDFGGVRI 452
E QERMV+ + G E F + R R+
Sbjct: 303 ESQERMVLVPKEGK-----------EKALEEVFGRWGLDCVPVARTIPERVFRV 345
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.410
Gapped
Lambda K H
0.267 0.0748 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,677,139
Number of extensions: 478150
Number of successful extensions: 1364
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1249
Number of HSP's successfully gapped: 72
Length of query: 495
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 398
Effective length of database: 3,993,456
Effective search space: 1589395488
Effective search space used: 1589395488
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.5 bits)