RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 011046
(495 letters)
>d2v3za2 d.127.1.1 (A:177-440) Aminopeptidase P, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 264
Score = 144 bits (363), Expect = 2e-40
Identities = 106/296 (35%), Positives = 160/296 (54%), Gaps = 36/296 (12%)
Query: 189 SDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCSYTCICAT 248
S E+A+++ A +I++ AH M+K R GM EY +E +HH + G R+ SY I +
Sbjct: 1 SPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEG-EIHHEFNRHGARYPSYNTIVGS 59
Query: 249 GENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYN 308
GEN +LHY N+ DGD+ L+D G EY+ Y DIT +FPVNGKFT Q IY+
Sbjct: 60 GENGCILHYTE----NECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYD 115
Query: 309 AVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHG 368
VL++ + +PG +++ +I++ L K G++ G+VDE++A F HG
Sbjct: 116 IVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPFFMHG 175
Query: 369 LGHFLGIDTHDPGGYPKGTERSKEPGLKSLRTVRELQERMVITVEPGCYFIDALLVPAME 428
L H+LG+D HD G Y + R EPG MV+TV PG Y
Sbjct: 176 LSHWLGLDVHDVGVYGQDRSRILEPG-------------MVLTVAPGLYIAP-------- 214
Query: 429 NESTSKFFNHEVIGRFKDFGGVRIESDVLVTANGSKNMT-SVPREISDIEAIMAGA 483
+ EV +++ G+RIE D+++T G++N+T SV ++ +IEA+M A
Sbjct: 215 --------DAEVPEQYRGI-GIRIEDDIVITETGNENLTASVVKKPEEIEALMVAA 261
>d2gg2a1 d.127.1.1 (A:3-264) Methionine aminopeptidase {Escherichia
coli [TaxId: 562]}
Length = 262
Score = 123 bits (310), Expect = 7e-33
Identities = 44/300 (14%), Positives = 95/300 (31%), Gaps = 48/300 (16%)
Query: 188 KSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCR-----HCSY 242
K+ ++ ++ A +++E + + G+ +++ + + + Y
Sbjct: 4 KTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGY 63
Query: 243 TCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSD 302
N V H + + +DGD+ +D+ + D + F V K T
Sbjct: 64 PKSVCISINEVVCHGIPD---DAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVG-KPTIM 119
Query: 303 QSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGA 362
+ ++ + +KPG+ ++ +K + A
Sbjct: 120 GERLCRITQESLYLALRMVKPGINLREIGAAIQKFV-----------------EAEGFSV 162
Query: 363 VFMPHGLGHFLGIDTHDPGGYPKGTERSKEPGLKSLRTVRELQERMVITVEPGCYFIDAL 422
V G G G +P + S T L+ M T+EP
Sbjct: 163 VREYCGHGIGRGFH-EEP----------QVLHYDSRETNVVLKPGMTFTIEPMVNAGKKE 211
Query: 423 LVPAMENESTSKFFNHEVIGRFKDFGGVRIESDVLVTANGSKNMTSVPREISDIEAIMAG 482
+ + V + + + E ++VT NG + +T + I AI++
Sbjct: 212 IRTMKD--------GWTVKTKDRSL-SAQYEHTIVVTDNGCEILTLRKDD--TIPAIISH 260
>d1pv9a2 d.127.1.1 (A:125-345) Aminopeptidase P, C-terminal domain
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 221
Score = 108 bits (271), Expect = 6e-28
Identities = 71/284 (25%), Positives = 115/284 (40%), Gaps = 63/284 (22%)
Query: 188 KSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCSYTCICA 247
K+ E+ +I+ A +I+ +A + +++ G +E ++ + + M G + T I +
Sbjct: 1 KTKEEIEIIEKACEIADKAVMAAIEEITEGKREREVAAKVEYLMKMNGAEKPAFDTIIAS 60
Query: 248 TGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIY 307
+D+ E GD+ ++D+GA Y Y SDIT + V G Q IY
Sbjct: 61 GHR-----SALPHGVASDKRIERGDLVVIDLGALYNHYNSDITRTIVV-GSPNEKQREIY 114
Query: 308 NAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPH 367
VL+A + A KPG+ ++ +A +I + G F+ H
Sbjct: 115 EIVLEAQKRAVEAAKPGMTAKELDSIAREI-----------------IKEYGYGDYFI-H 156
Query: 368 GLGHFLGIDTHDPGGYPKGTERSKEPGLKSLRTVRELQERMVITVEPGCYFIDALLVPAM 427
LGH +G++ H+ + E + G MVIT+EPG Y
Sbjct: 157 SLGHGVGLEIHEWPRISQYDETVLKEG-------------MVITIEPGIY---------- 193
Query: 428 ENESTSKFFNHEVIGRFKDFGGVRIESDVLVTANGSKNMTSVPR 471
GGVRIE VL+T NG+K +T R
Sbjct: 194 ----------------IPKLGGVRIEDTVLITENGAKRLTKTER 221
>d1o0xa_ d.127.1.1 (A:) Methionine aminopeptidase {Thermotoga
maritima [TaxId: 2336]}
Length = 249
Score = 108 bits (269), Expect = 2e-27
Identities = 49/284 (17%), Positives = 95/284 (33%), Gaps = 45/284 (15%)
Query: 188 KSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLH----HTYMYGGCRHCSYT 243
K+ E+ ++ A + A EV K G + +E++ L + Y
Sbjct: 5 KTPSEIEKMKKAGKAVAVALREVRKVIVPGKTAWDVETLVLEIFKKLRVKPAFKGYGGYK 64
Query: 244 CICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQ 303
N V+H ++ F++GD+ +D+GA YQ D ++ V G+
Sbjct: 65 YATCVSVNEEVVHGLP---LKEKVFKEGDIVSVDVGAVYQGLYGDAAVTYIV-GETDERG 120
Query: 304 SLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAV 363
+ + I +KPG+ D+ ++ +G
Sbjct: 121 KELVRVTREVLEKAIKMIKPGIRLGDVSHCIQE-------------------TVESVGFN 161
Query: 364 FMPHGLGHFLGIDTHDPGGYPKGTERSKEPGLKSLRTVRELQERMVITVEPGCYFIDALL 423
+ +GH +G + H+ P T L++ M + +EP D +
Sbjct: 162 VIRDYVGHGVGRELHEDPQIPNYGTP---------GTGVVLRKGMTLAIEPMVSEGDWRV 212
Query: 424 VPAMENESTSKFFNHEVIGRFKDFGGVRIESDVLVTANGSKNMT 467
V + + E +L+T NG++ +T
Sbjct: 213 VVKED--------GWTAVTVDG-SRCAHFEHTILITENGAEILT 247
>d1chma2 d.127.1.1 (A:157-402) Creatinase, catalytic (C-terminal)
domain {Pseudomonas putida [TaxId: 303]}
Length = 246
Score = 99.8 bits (247), Expect = 2e-24
Identities = 39/293 (13%), Positives = 80/293 (27%), Gaps = 58/293 (19%)
Query: 186 VFKSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHC----- 240
+ KS E +I+ I+ V++ + EY++
Sbjct: 1 MIKSAEEHVMIRHGARIADIGGAAVVEALGDQVPEYEVALHATQAMVRAIADTFEDVELM 60
Query: 241 SYTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFT 300
+G N+ H R GD+ L+ Y + + + ++
Sbjct: 61 DTWTWFQSGINTDGAHNPV----TTRKVNKGDILSLNCFPMIAGYYTALERTLFLDHCSD 116
Query: 301 SDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARL 360
++ ++ H A + +KPG D+ + + + +
Sbjct: 117 DHLR-LWQVNVEVHEAGLKLIKPGARCSDIARE--------------LNEIFLKHDVLQY 161
Query: 361 GAVFMPHGLGHFLGIDTHDPGGYPKGTERSKEPGLKSLRTVRELQERMVITVEPGCYFID 420
H G + G + L+ MV+++EP +
Sbjct: 162 RTFGYGHSFGTLSHYYGREAGLELRE------------DIDTVLEPGMVVSMEPMIMLPE 209
Query: 421 ALLVPAMENESTSKFFNHEVIGRFKDFGGVRIESDVLVTANGSKNMTSVPREI 473
GG R ++V NG++N+T P
Sbjct: 210 ----------------------GLPGAGGYREHDILIVNENGAENITKFPYGP 240
>d1qxya_ d.127.1.1 (A:) Methionine aminopeptidase {Staphylococcus
aureus [TaxId: 1280]}
Length = 249
Score = 86.0 bits (211), Expect = 1e-19
Identities = 47/284 (16%), Positives = 91/284 (32%), Gaps = 36/284 (12%)
Query: 186 VFKSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCSYTCI 245
+ K++ EL ++ I ++ + T+ G+ +++++ YG +
Sbjct: 2 IVKTEEELQALKEIGYICAKVRNTMQAATKPGITTKELDNIAKELFEEYGAISAPIHDEN 61
Query: 246 CATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSL 305
+V P+ R +GD+ +D+ A Y +D SF V +
Sbjct: 62 FPGQTCISVNEEVAHGIPSKRVIREGDLVNIDVSALKNGYYADTGISFVVGESDDPMKQK 121
Query: 306 IYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFM 365
+ + A I +KPG ++ K ++ + + + +G
Sbjct: 122 VCDVATMAFENAIAKVKPGTKLSNIGKAVHNTARQN------DLKVIKNLTGHGVGLSLH 175
Query: 366 PHGLGHFLGIDTHDPGGYPKGTERSKEPGLKSLRTVRELQERMVITVEPGCYFIDALLVP 425
D D +G MV+ +EP +A V
Sbjct: 176 EAPAHVLNYFDPKDKTLLTEG---------------------MVLAIEPFIS-SNASFVT 213
Query: 426 AMENESTSKFFNHEVIGRFKDFGGVRIESDVLVTANGSKNMTSV 469
+NE K F +IE V+VT +G T +
Sbjct: 214 EGKNEWA-------FETSDKSFV-AQIEHTVIVTKDGPILTTKI 249
>d2v3za1 c.55.2.1 (A:1-176) Aminopeptidase P {Escherichia coli
[TaxId: 562]}
Length = 176
Score = 77.2 bits (189), Expect = 3e-17
Identities = 33/187 (17%), Positives = 63/187 (33%), Gaps = 21/187 (11%)
Query: 11 KVPKELYFINREKVLNSLRQHLTETSRPLHGFVLLQGGEEQTRYCTDHLELFRQESYFAY 70
++ ++ + R+ ++ ++ L+ E TR D +RQ S F Y
Sbjct: 2 EISRQEFQRRRQALVEQMQPG---------SAALIFAAPEVTR-SADSEYPYRQNSDFWY 51
Query: 71 LFGVREPGFYGAIDIATGK---SILFAPRLPPDYAVWLGKIKPLSYFQEKYMVNMVYYTD 127
G EP + + S+LF +W G+ EK V+
Sbjct: 52 FTGFNEPEAVLVLIKSDDTHNHSVLFNRVRDLTAEIWFGRRLGQDAAPEKLGVDRALAFS 111
Query: 128 EIVGVLQGHYKEPGKPLLFLLHGLNTDSNNFSKPAQFEGMEKFET------ELNTLHPIL 181
EI L + G +++ G ++ A + + + P++
Sbjct: 112 EINQQL--YQLLNGLDVVYHAQGEYAYADVIVNSALEKLRKGSRQNLTAPATMIDWRPVV 169
Query: 182 SECRVFK 188
E R+FK
Sbjct: 170 HEMRLFK 176
>d1xgsa2 d.127.1.1 (A:1-194,A:272-295) Methionine aminopeptidase
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 218
Score = 72.4 bits (176), Expect = 3e-15
Identities = 38/276 (13%), Positives = 77/276 (27%), Gaps = 60/276 (21%)
Query: 192 ELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCSYTCICATGEN 251
+ + A +I+ + + +K R GM ++ + ++ + E
Sbjct: 2 DTEKLMKAGEIAKKVREKAIKLARPGMLLLELAESI--EKMIMELGGKPAFPVNLSINEI 59
Query: 252 SAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYNAVL 311
+A + ++GD +D+G + +D + V + A
Sbjct: 60 AAHYTPYK---GDTTVLKEGDYLKIDVGVHIDGFIADTAVTVRVGMEEDEL----MEAAK 112
Query: 312 KAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGLGH 371
+A NA I+ + GV + +G E + G + + GH
Sbjct: 113 EALNAAISVARAGVEIKE-------------------LGKAIENEIRKRGFKPIVNLSGH 153
Query: 372 FLGIDTHDPGGYPKGTERSKEPGLKSLRTVRELQERMVITVEPGCYFIDALLVPAMENES 431
+ G R + L+E V +EP
Sbjct: 154 KIERYKLHAGISIPNIYRPHDN--------YVLKEGDVFAIEPFAT-------------- 191
Query: 432 TSKFFNHEVIGRFKDFGGVRIESDVLVTANGSKNMT 467
IG + E ++V + T
Sbjct: 192 ---------IGARNGI-VAQFEHTIIVEKDSVIVTT 217
>d1b6aa2 d.127.1.1 (A:110-374,A:449-478) Methionine aminopeptidase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 295
Score = 65.7 bits (159), Expect = 2e-12
Identities = 33/284 (11%), Positives = 69/284 (24%), Gaps = 49/284 (17%)
Query: 188 KSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQM----ESMFLHHTYMYGGCRHCSYT 243
S+ + A + + VM + GM ++ E G ++
Sbjct: 52 ASEEIWNDFREAAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSRKLIKENGLNAGLAFP 111
Query: 244 CICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQ 303
C+ +A + + D+ +D G D + F
Sbjct: 112 TGCSLNNCAAHYTPNA---GDTTVLQYDDICKIDFGTHISGRIIDCAFTVT----FNPKY 164
Query: 304 SLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAV 363
+ AV A N I V D+ + ++++ + V +
Sbjct: 165 DTLLKAVKDATNTGIKCAGIDVRLCDVGEAIQEVMESYEVEIDGKTYQVKPIRN------ 218
Query: 364 FMPHGLGHFLGIDTHDPGGYPKGTERSKEPGLKSLRTVRELQERMVITVEPGCYFIDALL 423
H +G + G E G V +E
Sbjct: 219 LNGHSIGQYRIHAGKTVPIVKGGEATRMEEG-------------EVYAIETFGS------ 259
Query: 424 VPAMENESTSKFFNHEVIGRFKDFGGVRIESDVLVTANGSKNMT 467
+ + K + E +L+ + ++
Sbjct: 260 -------------TGKGVVDIKGSYTAQFEHTILLRPTCKEVVS 290
>d1b6ga_ c.69.1.8 (A:) Haloalkane dehalogenase {Xanthobacter
autotrophicus [TaxId: 280]}
Length = 310
Score = 32.6 bits (72), Expect = 0.091
Identities = 19/150 (12%), Positives = 35/150 (23%), Gaps = 6/150 (4%)
Query: 123 VYYTDEIVGV--LQGHYKE----PGKPLLFLLHGLNTDSNNFSKPAQFEGMEKFETELNT 176
Y D++ G L+ HY + + + LHG T S + K
Sbjct: 22 PNYLDDLPGYPGLRAHYLDEGNSDAEDVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPD 81
Query: 177 LHPILSECRVFKSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGG 236
+ + ++ +++ T V + L
Sbjct: 82 FFGFGKSDKPVDEEDYTFEFHRNFLLALIERLDLRNITLVVQDWGGFLGLTLPMADPSRF 141
Query: 237 CRHCSYTCICATGENSAVLHYGHAAAPNDR 266
R T + P D
Sbjct: 142 KRLIIMNACLMTDPVTQPAFSAFVTQPADG 171
>d1r3da_ c.69.1.35 (A:) Hypothetical protein VC1974 {Vibrio cholerae
[TaxId: 666]}
Length = 264
Score = 32.2 bits (71), Expect = 0.13
Identities = 31/247 (12%), Positives = 60/247 (24%), Gaps = 14/247 (5%)
Query: 136 HYKEPG--KPLLFLLHGLNTDSNNFSKPAQFEGMEKFETELNTLHPILSECRVFKSDHEL 193
H+ +P PL+ L+HGL ++ + L L H
Sbjct: 8 HFAKPTARTPLVVLVHGLLGSGADWQPVLSHLARTQC----AALTLDLPGHGTNPERHCD 63
Query: 194 ALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCSYTCICATGENSA 253
+ I V + V + Y + + H G + G +
Sbjct: 64 NFAEAVEMIEQTVQAHVTSEVPVILVGYSLGGRLIMHGLAQGAFSRLNLRGAIIEGGHFG 123
Query: 254 VLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYNAVLKA 313
+ AA + +N + +A L +
Sbjct: 124 LQENEEKAARWQHDQQWAQRFSQQPIEHVLSDWYQQAVFSSLNHEQRQTLIAQRSANLGS 183
Query: 314 HNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEM---MAARLGAVFMP-HGL 369
A + + + + L + G D +A G +
Sbjct: 184 SVAHMLLATSLAKQPYLLPALQALKLPIH----YVCGEQDSKFQQLAESSGLSYSQVAQA 239
Query: 370 GHFLGID 376
GH + +
Sbjct: 240 GHNVHHE 246
>d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin
IIa) {Human (Homo sapiens) [TaxId: 9606]}
Length = 50
Score = 27.1 bits (60), Expect = 0.57
Identities = 9/21 (42%), Positives = 9/21 (42%), Gaps = 6/21 (28%)
Query: 235 GGCRH-C-----SYTCICATG 249
GGC H C C CA G
Sbjct: 7 GGCTHYCLEEVGWRRCSCAPG 27
>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK
{Thermotoga maritima [TaxId: 2336]}
Length = 271
Score = 29.8 bits (66), Expect = 0.58
Identities = 12/159 (7%), Positives = 36/159 (22%), Gaps = 6/159 (3%)
Query: 217 GMKEYQMESMFLHHTYMYGGCRHCSYTCICATGENSAVLHYGHAAAPNDRTFEDGDMALL 276
+ ++ + + + + A + + E
Sbjct: 95 TEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAE 154
Query: 277 DMGAEYQFYGSDITCSFPVNGKF------TSDQSLIYNAVLKAHNAVINAMKPGVCWVDM 330
G +F+ P KF S+ + ++ + + + D
Sbjct: 155 RHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDG 214
Query: 331 HKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGL 369
+ G +++ + E L +
Sbjct: 215 LDFYREFFGRYDTSGKIVLMEIGEDQVEELKKIVSDTVF 253
>d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human
(Homo sapiens) [TaxId: 9606]}
Length = 51
Score = 27.1 bits (60), Expect = 0.66
Identities = 8/21 (38%), Positives = 8/21 (38%), Gaps = 6/21 (28%)
Query: 235 GGCRH-C-----SYTCICATG 249
G C C S C CA G
Sbjct: 8 GDCDQFCHEEQNSVVCSCARG 28
>d1vj7a1 a.211.1.1 (A:5-196) Stringent response-like protein RelA
N-terminal domain {Streptococcus equisimilis [TaxId:
119602]}
Length = 192
Score = 29.4 bits (65), Expect = 0.67
Identities = 25/162 (15%), Positives = 52/162 (32%), Gaps = 23/162 (14%)
Query: 176 TLHPILSECRVFKSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYG 235
T +++ + ++ + A ++ A D ++ AH ++K+ E +H + G
Sbjct: 4 TGEEVVALAAKYMNETDAAFVKKALDYATAAHFYQVRKSG--------EPYIVHPIQVAG 55
Query: 236 GCRHCSYTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPV 295
+ A ED D+ L ++ ++ DI
Sbjct: 56 ILADLHLDAVT------------VACGFLHDVVEDTDITLDNIEFDFGKDVRDIVDGVTK 103
Query: 296 NGKFTSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKI 337
GK A + + V V KLA+++
Sbjct: 104 LGKVEYKSHEEQLAENHRKMLMAMSKDIRVILV---KLADRL 142
>d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus)
[TaxId: 9913]}
Length = 51
Score = 26.3 bits (58), Expect = 1.2
Identities = 8/21 (38%), Positives = 8/21 (38%), Gaps = 6/21 (28%)
Query: 235 GGCRH-C-----SYTCICATG 249
GGC C C CA G
Sbjct: 6 GGCDQFCREERSEVRCSCAHG 26
>d2r8ba1 c.69.1.14 (A:44-246) Uncharacterized protein Atu2452
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 203
Score = 28.9 bits (63), Expect = 1.2
Identities = 11/32 (34%), Positives = 11/32 (34%), Gaps = 3/32 (9%)
Query: 136 HYKEPG---KPLLFLLHGLNTDSNNFSKPAQF 164
H G PL LLHG D N F
Sbjct: 8 HKSRAGVAGAPLFVLLHGTGGDENQFFDFGAR 39
>d2h1ia1 c.69.1.14 (A:1-202) Carboxylesterase {Bacillus cereus
[TaxId: 1396]}
Length = 202
Score = 28.6 bits (62), Expect = 1.2
Identities = 19/169 (11%), Positives = 36/169 (21%), Gaps = 21/169 (12%)
Query: 138 KEPGKPLLFLLHGLNTDSNNFSKPAQ---------FEGMEKFETELNTLHPILSECRVFK 188
K+ KP+L LLHG + + A+ E + L+E +
Sbjct: 10 KDTSKPVLLLLHGTGGNELDLLPLAEIVDSEASVLSVRGNVLENGMPRFFRRLAEGIFDE 69
Query: 189 SDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCSYTCICAT 248
D + + A + + Y + +
Sbjct: 70 EDLIFRTKELNEFLDEAAKEYKFDRNNIVAIGYSNGANIAASLLFHYENALKGAVLHHPM 129
Query: 249 GENSAVLHYGHAAAPNDRTFEDGDM------------ALLDMGAEYQFY 285
+ A D L + A +
Sbjct: 130 VPRRGMQLANLAGKSVFIAAGTNDPICSSAESEELKVLLENANANVTMH 178
>d2bz6l1 g.3.11.1 (L:90-142) Coagulation factor VIIa {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 26.3 bits (58), Expect = 1.3
Identities = 7/22 (31%), Positives = 8/22 (36%), Gaps = 7/22 (31%)
Query: 235 GGCRH-C------SYTCICATG 249
GGC C +C C G
Sbjct: 7 GGCEQYCSDHTGTKRSCRCHEG 28
>d1rfnb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId:
9606]}
Length = 57
Score = 26.3 bits (58), Expect = 1.5
Identities = 6/22 (27%), Positives = 6/22 (27%), Gaps = 7/22 (31%)
Query: 235 GGCRH-C------SYTCICATG 249
G C C C C G
Sbjct: 8 GRCEQFCKNSADNKVVCSCTEG 29
>d1mtza_ c.69.1.7 (A:) Tricorn interacting factor F1 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 290
Score = 28.7 bits (62), Expect = 1.5
Identities = 18/133 (13%), Positives = 33/133 (24%), Gaps = 18/133 (13%)
Query: 136 HYKEPG----KPLLFLLHGLNTDSNNFSKPAQFEGMEKFETELNTLHPILSECRVFKSDH 191
+YK K L +HG S+++ + E V D
Sbjct: 15 YYKLCKAPEEKAKLMTMHGGPGMSHDYLLSLRDMTKEGI--------------TVLFYDQ 60
Query: 192 ELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCSYTCICATGEN 251
D S +++ + YGG +Y
Sbjct: 61 FGCGRSEEPDQSKFTIDYGVEEAEALRSKLFGNEKVFLMGSSYGGALALAYAVKYQDHLK 120
Query: 252 SAVLHYGHAAAPN 264
++ G ++ P
Sbjct: 121 GLIVSGGLSSVPL 133
>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL)
receptor, different EGF domains {Human (Homo sapiens)
[TaxId: 9606]}
Length = 40
Score = 25.5 bits (56), Expect = 1.8
Identities = 9/21 (42%), Positives = 10/21 (47%), Gaps = 6/21 (28%)
Query: 235 GGCRH-C-----SYTCICATG 249
GGC H C Y C+C G
Sbjct: 10 GGCSHVCNDLKIGYECLCPDG 30
>d3b5ea1 c.69.1.14 (A:7-215) Uncharacterized protein Mll8374
{Mesorhizobium loti [TaxId: 381]}
Length = 209
Score = 28.1 bits (61), Expect = 2.2
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 139 EPGKPLLFLLHGLNTDSNNFSKPAQF 164
+ + LFLLHG D A+
Sbjct: 20 KESRECLFLLHGSGVDETTLVPLARR 45
>d2iv2x1 b.52.2.2 (X:565-715) Formate dehydrogenase H {Escherichia
coli [TaxId: 562]}
Length = 151
Score = 26.9 bits (59), Expect = 3.5
Identities = 11/95 (11%), Positives = 30/95 (31%), Gaps = 19/95 (20%)
Query: 314 HNAVINAMKPGVCWVDMH-------KLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMP 366
+ A + A+ + ++ + ++ ++ + G ++ GA++M
Sbjct: 30 NCAALAALADEPGYAQINTEDAKRLGIEDEALVWVHSRKGKIITRAQVSDRPNKGAIYMT 89
Query: 367 HGLGHF----LGIDTHDPGGYPKGTERSKEPGLKS 397
+ L + P +K P K
Sbjct: 90 YQWWIGACNELVTENLSP--------ITKTPEYKY 116
>d2i47a1 d.92.1.10 (A:220-473) TNF-alpha converting enzyme, TACE,
catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 254
Score = 27.2 bits (59), Expect = 4.4
Identities = 16/75 (21%), Positives = 23/75 (30%), Gaps = 2/75 (2%)
Query: 320 AMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGLGHFLGIDTHD 379
GVC + L G N + + + + H LGH G HD
Sbjct: 140 NSHGGVCP-KAYYSPVGKKNIYLNSGLTSTKNYGKTILTKEADLVTTHELGHNFGA-EHD 197
Query: 380 PGGYPKGTERSKEPG 394
P G + + G
Sbjct: 198 PDGLAECAPNEDQGG 212
>d1k8qa_ c.69.1.6 (A:) Gastric lipase {Dog (Canis familiaris)
[TaxId: 9615]}
Length = 377
Score = 27.4 bits (59), Expect = 4.7
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 138 KEPGKPLLFLLHGLNTDSNNFSKPAQFEGMEKF 170
+P+ FL HGL + N+ +
Sbjct: 54 NIGRRPVAFLQHGLLASATNWISNLPNNSLAFI 86
>d1m33a_ c.69.1.26 (A:) Biotin biosynthesis protein BioH
{Escherichia coli [TaxId: 562]}
Length = 256
Score = 26.3 bits (56), Expect = 7.7
Identities = 6/25 (24%), Positives = 11/25 (44%), Gaps = 2/25 (8%)
Query: 136 HYKE--PGKPLLFLLHGLNTDSNNF 158
++ G L LLHG ++ +
Sbjct: 3 WWQTKGQGNVHLVLLHGWGLNAEVW 27
>d1z8ma1 d.298.1.2 (A:1-88) Hypothetical protein HP0894
{Helicobacter pylori [TaxId: 210]}
Length = 88
Score = 24.7 bits (54), Expect = 9.6
Identities = 10/42 (23%), Positives = 20/42 (47%)
Query: 418 FIDALLVPAMENESTSKFFNHEVIGRFKDFGGVRIESDVLVT 459
+ +L + +F +H + G++K F I+ DVL+
Sbjct: 27 LNEVILTLRKKEPLDPQFQDHALKGKWKPFRECHIKPDVLLV 68
>d1x9za_ d.292.1.1 (A:) DNA mismatch repair protein MutL
{Escherichia coli [TaxId: 562]}
Length = 182
Score = 26.0 bits (57), Expect = 9.9
Identities = 2/23 (8%), Positives = 6/23 (26%)
Query: 324 GVCWVDMHKLAEKIILESLKKGG 346
+ + + + L G
Sbjct: 22 NISLLSLPVAERWLRQAQLTPGE 44
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.410
Gapped
Lambda K H
0.267 0.0666 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,854,215
Number of extensions: 88294
Number of successful extensions: 347
Number of sequences better than 10.0: 1
Number of HSP's gapped: 318
Number of HSP's successfully gapped: 33
Length of query: 495
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 406
Effective length of database: 1,185,626
Effective search space: 481364156
Effective search space used: 481364156
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.1 bits)