BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011047
(494 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VKO|A Chain A, Crystal Structure Of Inositol-3-Phosphate Synthase
(Ce21227) From Caenorhabditis Elegans At 2.30 A
Resolution
Length = 537
Score = 503 bits (1295), Expect = e-142, Method: Compositional matrix adjust.
Identities = 242/426 (56%), Positives = 321/426 (75%), Gaps = 5/426 (1%)
Query: 71 GISWATKDTVQQANYFGSLTQASAIRVG--SYNGEEIYAPFKSILPMVNPDDIVFGGWDI 128
++W TK+ QANYFGS+TQ + + +G S +I+ PFK I+P+++P+D++ GWDI
Sbjct: 102 AMTWRTKEGHSQANYFGSVTQTATVHLGYDSATQNQIFVPFKDIVPILSPNDLIISGWDI 161
Query: 129 SDMNLADAMARARVFDIDLQKQLRPYMESMVPLPGIYDPDFIAANQGSRANNVIKGTKKE 188
SD NL +AM RA+VF+ +LQ++LRP+ME +VPLP IY PDFIA+NQG RANNVI G K
Sbjct: 162 SDSNLYEAMGRAKVFEPELQEKLRPFMEPIVPLPSIYYPDFIASNQGDRANNVIPGDNKL 221
Query: 189 QMLQIIK-DIREFKEKNKVDRVVVLWTANTERYSNVIVGLNDTVENLLASLDKNEAEISP 247
+ L+ I+ DIR+FK++++++ V+VLWTANTERY++V GLN T + ++ S+ NE E+SP
Sbjct: 222 EHLEHIRADIRKFKQEHELECVIVLWTANTERYTDVRQGLNATADEIMESIRVNEDEVSP 281
Query: 248 STLYAIACVLENIPFINGSPQNTFVPGLIDLAIRRNCLIGGDDFKSGQTKMKSVLVDFLV 307
S ++A+A +LE +INGSPQNT VPGLI+LA R +GGDDFKSGQTK KS VDFLV
Sbjct: 282 SNIFAVASILEGAHYINGSPQNTLVPGLIELAERHKVFVGGDDFKSGQTKFKSAFVDFLV 341
Query: 308 GAGIKPTSIVSYNHLGNNDGMNLSAPQTFRSKEISKSNVVDDMVSSNGILYGPGEHPDHV 367
+G+KP SIVSYNHLGNNDG NLS + FRSKEISKS+VVDDMV SN IL+ ++PD+
Sbjct: 342 SSGMKPESIVSYNHLGNNDGKNLSEARQFRSKEISKSSVVDDMVKSNQILFPDAKNPDYC 401
Query: 368 VVIKYVPYVGDSKRAMDEYTSEIFMGGKNTIVLHNTCEDSLLAAPIVLDLVLLAELSTRI 427
VVIKYVPYV DSKRAMDEY IFMGGK T V+HNTCEDSLLA+P++ DL +L EL++R+
Sbjct: 402 VVIKYVPYVADSKRAMDEYICSIFMGGKQTFVVHNTCEDSLLASPLIYDLAILTELASRV 461
Query: 428 QLKAEGEGKFHSFHPVATILSYLTKAPLVPPGTPVVNALSKQRAMLENILRACVGLAPEN 487
K + E + FH V +ILS L KAP+VPPGTP+ NA +Q + L ++ A G +
Sbjct: 462 SYKVDDE--YKPFHSVLSILSLLLKAPVVPPGTPISNAFMRQFSTLTKLVTALAGFPSDT 519
Query: 488 NMILEY 493
+M +E+
Sbjct: 520 DMQIEF 525
>pdb|1JKF|A Chain A, Holo 1l-Myo-Inositol-1-Phosphate Synthase
pdb|1JKF|B Chain B, Holo 1l-Myo-Inositol-1-Phosphate Synthase
pdb|1JKI|A Chain A, Myo-Inositol-1-Phosphate Synthase Complexed With An
Inhibitor, 2- Deoxy-Glucitol-6-Phosphate
pdb|1JKI|B Chain B, Myo-Inositol-1-Phosphate Synthase Complexed With An
Inhibitor, 2- Deoxy-Glucitol-6-Phosphate
pdb|1P1F|A Chain A, Crystal Structure Of Apo 1l-Myo-Inositol 1-Phosphate
Synthase
pdb|1P1F|B Chain B, Crystal Structure Of Apo 1l-Myo-Inositol 1-Phosphate
Synthase
pdb|1P1H|A Chain A, Crystal Structure Of The 1l-Myo-InositolNAD+ COMPLEX
pdb|1P1H|B Chain B, Crystal Structure Of The 1l-Myo-InositolNAD+ COMPLEX
pdb|1P1H|C Chain C, Crystal Structure Of The 1l-Myo-InositolNAD+ COMPLEX
pdb|1P1H|D Chain D, Crystal Structure Of The 1l-Myo-InositolNAD+ COMPLEX
pdb|1P1I|A Chain A, Crystal Structure Of The Nad+-Bound 1l-Myo-Inositol
1-Phosphate Synthase
pdb|1P1I|B Chain B, Crystal Structure Of The Nad+-Bound 1l-Myo-Inositol
1-Phosphate Synthase
pdb|1P1J|A Chain A, Crystal Structure Of The 1l-Myo-Inositol 1-Phosphate
Synthase Complexed With Nadh
pdb|1P1J|B Chain B, Crystal Structure Of The 1l-Myo-Inositol 1-Phosphate
Synthase Complexed With Nadh
pdb|1P1K|A Chain A, Crystal Structure Of The 1l-Myo-Inositol 1-Phosphate
Synthase Complexed With Nadh In The Presence Of Edta
pdb|1P1K|B Chain B, Crystal Structure Of The 1l-Myo-Inositol 1-Phosphate
Synthase Complexed With Nadh In The Presence Of Edta
pdb|1RM0|A Chain A, Crystal Structure Of Myo-Inositol 1-Phosphate Synthase
From Saccharomyces Cerevisiae In Complex With Nad+ And
2-Deoxy-D-Glucitol 6-(E)-Vinylhomophosphonate
pdb|1RM0|B Chain B, Crystal Structure Of Myo-Inositol 1-Phosphate Synthase
From Saccharomyces Cerevisiae In Complex With Nad+ And
2-Deoxy-D-Glucitol 6-(E)-Vinylhomophosphonate
Length = 533
Score = 487 bits (1253), Expect = e-138, Method: Compositional matrix adjust.
Identities = 242/440 (55%), Positives = 312/440 (70%), Gaps = 17/440 (3%)
Query: 72 ISWATKDTVQQANYFGSLTQASAIRVG-SYNGEEIYAPFKSILPMVNPDDIVFGGWDISD 130
+ + TK+ V+Q NYFGS+TQ S +++G G ++YAPF S+LPMV+P+D V GWDI++
Sbjct: 92 VEFQTKEGVKQPNYFGSMTQCSTLKLGIDAEGNDVYAPFNSLLPMVSPNDFVVSGWDINN 151
Query: 131 MNLADAMARARVFDIDLQKQLRPYMESMVPLPGIYDPDFIAANQGSRANNVI----KGT- 185
+L +AM R++V + DLQ++L+ M + PLP IY PDFIAANQ RANN I KG
Sbjct: 152 ADLYEAMQRSQVLEYDLQQRLKAKMSLVKPLPSIYYPDFIAANQDERANNCINLDEKGNV 211
Query: 186 ----KKEQMLQIIKDIREFKEKNKVDRVVVLWTANTERYSNVIVGLNDTVENLLASLDKN 241
K + +I +DI+ FKE+N +D+V+VLWTANTERY V G+NDT+ENLL S+ +
Sbjct: 212 TTRGKWTHLQRIRRDIQNFKEENALDKVIVLWTANTERYVEVSPGVNDTMENLLQSIKND 271
Query: 242 EAEISPSTLYAIACVLENIPFINGSPQNTFVPGLIDLAIRRNCLIGGDDFKSGQTKMKSV 301
EI+PST++A A +LE +P+INGSPQNTFVPGL+ LA I GDD KSGQTK+KSV
Sbjct: 272 HEEIAPSTIFAAASILEGVPYINGSPQNTFVPGLVQLAEHEGTFIAGDDLKSGQTKLKSV 331
Query: 302 LVDFLVGAGIKPTSIVSYNHLGNNDGMNLSAPQTFRSKEISKSNVVDDMVSSNGILYGP- 360
L FLV AGIKP SI SYNHLGNNDG NLSAP+ FRSKEISKS+V+DD+++SN ILY
Sbjct: 332 LAQFLVDAGIKPVSIASYNHLGNNDGYNLSAPKQFRSKEISKSSVIDDIIASNDILYNDK 391
Query: 361 -GEHPDHVVVIKYVPYVGDSKRAMDEYTSEIFMGGKNTIVLHNTCEDSLLAAPIVLDLVL 419
G+ DH +VIKY+ VGDSK AMDEY SE+ +GG N I +HN CEDSLLA P+++DL++
Sbjct: 392 LGKKVDHCIVIKYMKPVGDSKVAMDEYYSELMLGGHNRISIHNVCEDSLLATPLIIDLLV 451
Query: 420 LAELSTRIQLK-----AEGEGKFHSFHPVATILSYLTKAPLVPPGTPVVNALSKQRAMLE 474
+ E TR+ K E GKF +F+PV T LSY KAPL PG VN L+KQR LE
Sbjct: 452 MTEFCTRVSYKKVDPVKEDAGKFENFYPVLTFLSYWLKAPLTRPGFHPVNGLNKQRTALE 511
Query: 475 NILRACVGLAPENNMILEYK 494
N LR +GL +N + E +
Sbjct: 512 NFLRLLIGLPSQNELRFEER 531
>pdb|1LA2|A Chain A, Structural Analysis Of Saccharomyces Cerevisiae Myo-
Inositol Phosphate Synthase
pdb|1LA2|B Chain B, Structural Analysis Of Saccharomyces Cerevisiae Myo-
Inositol Phosphate Synthase
pdb|1LA2|C Chain C, Structural Analysis Of Saccharomyces Cerevisiae Myo-
Inositol Phosphate Synthase
pdb|1LA2|D Chain D, Structural Analysis Of Saccharomyces Cerevisiae Myo-
Inositol Phosphate Synthase
Length = 533
Score = 474 bits (1219), Expect = e-134, Method: Compositional matrix adjust.
Identities = 238/440 (54%), Positives = 303/440 (68%), Gaps = 17/440 (3%)
Query: 70 EGISWATKDTVQQANYFGSLTQASAIRVG-SYNGEEIYAPFKSILPMVNPDDIVFGGWDI 128
+ + TK+ V+Q NYFGS TQ S +++G G ++YAPF S+LP V+P+D V GWDI
Sbjct: 90 HNVEFQTKEGVKQPNYFGSXTQCSTLKLGIDAEGNDVYAPFNSLLPXVSPNDFVVSGWDI 149
Query: 129 SDMNLADAMARARVFDIDLQKQLRPYMESMVPLPGIYDPDFIAANQGSRANNVI----KG 184
++ +L +A R++V + DLQ++L+ + PLP IY PDFIAANQ RANN I KG
Sbjct: 150 NNADLYEAXQRSQVLEYDLQQRLKAKXSLVKPLPSIYYPDFIAANQDERANNCINLDEKG 209
Query: 185 T-----KKEQMLQIIKDIREFKEKNKVDRVVVLWTANTERYSNVIVGLNDTVENLLASLD 239
K + +I +DI+ FKE+N +D+V+VLWTANTERY V G+NDT ENLL S+
Sbjct: 210 NVTTRGKWTHLQRIRRDIQNFKEENALDKVIVLWTANTERYVEVSPGVNDTXENLLQSIK 269
Query: 240 KNEAEISPSTLYAIACVLENIPFINGSPQNTFVPGLIDLAIRRNCLIGGDDFKSGQTKMK 299
+ EI+PST++A A +LE +P+INGSPQNTFVPGL+ LA I GDD KSGQTK+K
Sbjct: 270 NDHEEIAPSTIFAAASILEGVPYINGSPQNTFVPGLVQLAEHEGTFIAGDDLKSGQTKLK 329
Query: 300 SVLVDFLVGAGIKPTSIVSYNHLGNNDGMNLSAPQTFRSKEISKSNVVDDMVSSNGILYG 359
SVL FLV AGIKP SI SYNHLGNNDG NLSAP+ FRSKEISKS+V+DD+++SN ILY
Sbjct: 330 SVLAQFLVDAGIKPVSIASYNHLGNNDGYNLSAPKQFRSKEISKSSVIDDIIASNDILYN 389
Query: 360 P--GEHPDHVVVIKYVPYVGDSKRAMDEYTSEIFMGGKNTIVLHNTCEDSLLAAPIVLDL 417
G+ DH +VIKY VGDSK A DEY SE+ +GG N I +HN CEDSLLA P+++DL
Sbjct: 390 DKLGKKVDHCIVIKYXKPVGDSKVAXDEYYSELXLGGHNRISIHNVCEDSLLATPLIIDL 449
Query: 418 VLLAELSTRIQLK-----AEGEGKFHSFHPVATILSYLTKAPLVPPGTPVVNALSKQRAM 472
++ E TR+ K E GKF +F+PV T LSY KAPL PG VN L+KQR
Sbjct: 450 LVXTEFCTRVSYKKVDPVKEDAGKFENFYPVLTFLSYWLKAPLTRPGFHPVNGLNKQRTA 509
Query: 473 LENILRACVGLAPENNMILE 492
LEN LR +GL +N + E
Sbjct: 510 LENFLRLLIGLPSQNELRFE 529
>pdb|1U1I|A Chain A, Myo-Inositol Phosphate Synthase Mips From A. Fulgidus
pdb|1U1I|B Chain B, Myo-Inositol Phosphate Synthase Mips From A. Fulgidus
pdb|1U1I|C Chain C, Myo-Inositol Phosphate Synthase Mips From A. Fulgidus
pdb|1U1I|D Chain D, Myo-Inositol Phosphate Synthase Mips From A. Fulgidus
pdb|3QVS|A Chain A, L-Myo-Inositol 1-Phosphate Synthase From Archaeoglobus
Fulgidus Wild Type
pdb|3QVT|A Chain A, L-Myo-Inositol 1-Phosphate Synthase From Archaeoglobus
Fulgidus Wild- Type With The Intermediate 5-Keto
1-Phospho Glucose
Length = 392
Score = 95.1 bits (235), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 91/333 (27%), Positives = 154/333 (46%), Gaps = 44/333 (13%)
Query: 100 YNGEEIYAPFKSILPMVNPDDIVFGGWDISDMNLADAMARA-----RVFDIDLQKQLRPY 154
+ G E YAPF FGG +I ++ A A+ R FD ++ + ++
Sbjct: 40 FEGIEKYAPF----------SFEFGGHEIRLLSNAYEAAKEHWELNRHFDREILEAVKSD 89
Query: 155 MESMVPLPGIYDPDFIAANQGSRANNV-----IKG---TKKEQMLQIIKDIREFKEKNKV 206
+E +V G A N GS + ++G + E + +I +DI+ F +
Sbjct: 90 LEGIVARKGT------ALNCGSGIKELGDIKTLEGEGLSLAEMVSRIEEDIKSFAD---- 139
Query: 207 DRVVVLWTANTERYSNVIVGLNDTVENLLASLDKNEAEI-SPSTLYAIACVLENIPFING 265
D VV+ A+TE N + ++E +D++ E S S LYA A + +P+ N
Sbjct: 140 DETVVINVASTEPLPNYSEEYHGSLEGFERMIDEDRKEYASASMLYAYAALKLGLPYANF 199
Query: 266 SPQ-NTFVPGLIDLAIRRNCLIGGDDFKSGQTKMKSVLVDFLVGAGIKPTSIVSYNHLGN 324
+P + +P L +LA ++ G+D K+G+T +K+ L ++ +SYN LG+
Sbjct: 200 TPSPGSAIPALKELAEKKGVPHAGNDGKTGETLVKTTLAPMFAYRNMEVVGWMSYNILGD 259
Query: 325 NDGMNLSAPQTFRSKEISKSNVVDDMVSSNGILYGPGEHPDHVVVIKYVPYVGDSKRAMD 384
DG LSA SK +SK V++ M+ G P + I+Y P + D+K A D
Sbjct: 260 YDGKVLSARDNKESKVLSKDKVLEKML---------GYSPYSITEIQYFPSLVDNKTAFD 310
Query: 385 EYTSEIFMGGKNTIVLHNTCEDSLLAAPIVLDL 417
+ F+G D+++AAP++LD+
Sbjct: 311 FVHFKGFLGKLMKFYFIWDAIDAIVAAPLILDI 343
>pdb|3QVX|A Chain A, L-Myo-Inositol 1-Phosphate Synthase From Archaeoglobus
Fulgidus Mutant K367a
Length = 392
Score = 95.1 bits (235), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 91/333 (27%), Positives = 154/333 (46%), Gaps = 44/333 (13%)
Query: 100 YNGEEIYAPFKSILPMVNPDDIVFGGWDISDMNLADAMARA-----RVFDIDLQKQLRPY 154
+ G E YAPF FGG +I ++ A A+ R FD ++ + ++
Sbjct: 40 FEGIEKYAPF----------SFEFGGHEIRLLSNAYEAAKEHWELNRHFDREILEAVKSD 89
Query: 155 MESMVPLPGIYDPDFIAANQGSRANNV-----IKG---TKKEQMLQIIKDIREFKEKNKV 206
+E +V G A N GS + ++G + E + +I +DI+ F +
Sbjct: 90 LEGIVARKGT------ALNCGSGIKELGDIKTLEGEGLSLAEMVSRIEEDIKSFAD---- 139
Query: 207 DRVVVLWTANTERYSNVIVGLNDTVENLLASLDKNEAEI-SPSTLYAIACVLENIPFING 265
D VV+ A+TE N + ++E +D++ E S S LYA A + +P+ N
Sbjct: 140 DETVVINVASTEPLPNYSEEYHGSLEGFERMIDEDRKEYASASMLYAYAALKLGLPYANF 199
Query: 266 SPQ-NTFVPGLIDLAIRRNCLIGGDDFKSGQTKMKSVLVDFLVGAGIKPTSIVSYNHLGN 324
+P + +P L +LA ++ G+D K+G+T +K+ L ++ +SYN LG+
Sbjct: 200 TPSPGSAIPALKELAEKKGVPHAGNDGKTGETLVKTTLAPMFAYRNMEVVGWMSYNILGD 259
Query: 325 NDGMNLSAPQTFRSKEISKSNVVDDMVSSNGILYGPGEHPDHVVVIKYVPYVGDSKRAMD 384
DG LSA SK +SK V++ M+ G P + I+Y P + D+K A D
Sbjct: 260 YDGKVLSARDNKESKVLSKDKVLEKML---------GYSPYSITEIQYFPSLVDNKTAFD 310
Query: 385 EYTSEIFMGGKNTIVLHNTCEDSLLAAPIVLDL 417
+ F+G D+++AAP++LD+
Sbjct: 311 FVHFKGFLGKLMKFYFIWDAIDAIVAAPLILDI 343
>pdb|3QVW|A Chain A, L-Myo-Inositol 1-Phosphate Synthase From Archaeoglobus
Fulgidus Mutant K278a
Length = 392
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 90/333 (27%), Positives = 153/333 (45%), Gaps = 44/333 (13%)
Query: 100 YNGEEIYAPFKSILPMVNPDDIVFGGWDISDMNLADAMARA-----RVFDIDLQKQLRPY 154
+ G E YAPF FGG +I ++ A A+ R FD ++ + ++
Sbjct: 40 FEGIEKYAPF----------SFEFGGHEIRLLSNAYEAAKEHWELNRHFDREILEAVKSD 89
Query: 155 MESMVPLPGIYDPDFIAANQGSRANNV-----IKG---TKKEQMLQIIKDIREFKEKNKV 206
+E +V G A N GS + ++G + E + +I +DI+ F +
Sbjct: 90 LEGIVARKGT------ALNCGSGIKELGDIKTLEGEGLSLAEMVSRIEEDIKSFAD---- 139
Query: 207 DRVVVLWTANTERYSNVIVGLNDTVENLLASLDKNEAEI-SPSTLYAIACVLENIPFING 265
D VV+ A+TE N + ++E +D++ E S S LYA A + +P+ N
Sbjct: 140 DETVVINVASTEPLPNYSEEYHGSLEGFERMIDEDRKEYASASMLYAYAALKLGLPYANF 199
Query: 266 SPQ-NTFVPGLIDLAIRRNCLIGGDDFKSGQTKMKSVLVDFLVGAGIKPTSIVSYNHLGN 324
+P + +P L +LA ++ G+D K+G+T +K+ L ++ +SYN LG+
Sbjct: 200 TPSPGSAIPALKELAEKKGVPHAGNDGKTGETLVKTTLAPMFAYRNMEVVGWMSYNILGD 259
Query: 325 NDGMNLSAPQTFRSKEISKSNVVDDMVSSNGILYGPGEHPDHVVVIKYVPYVGDSKRAMD 384
DG LSA SK +S V++ M+ G P + I+Y P + D+K A D
Sbjct: 260 YDGKVLSARDNKESKVLSADKVLEKML---------GYSPYSITEIQYFPSLVDNKTAFD 310
Query: 385 EYTSEIFMGGKNTIVLHNTCEDSLLAAPIVLDL 417
+ F+G D+++AAP++LD+
Sbjct: 311 FVHFKGFLGKLMKFYFIWDAIDAIVAAPLILDI 343
>pdb|3QW2|A Chain A, L-Myo-Inositol 1-Phosphate Synthase From Archaeoglobus
Mutant N255a
pdb|3QW2|B Chain B, L-Myo-Inositol 1-Phosphate Synthase From Archaeoglobus
Mutant N255a
pdb|3QW2|C Chain C, L-Myo-Inositol 1-Phosphate Synthase From Archaeoglobus
Mutant N255a
pdb|3QW2|D Chain D, L-Myo-Inositol 1-Phosphate Synthase From Archaeoglobus
Mutant N255a
Length = 392
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 90/333 (27%), Positives = 153/333 (45%), Gaps = 44/333 (13%)
Query: 100 YNGEEIYAPFKSILPMVNPDDIVFGGWDISDMNLADAMARA-----RVFDIDLQKQLRPY 154
+ G E YAPF FGG +I ++ A A+ R FD ++ + ++
Sbjct: 40 FEGIEKYAPF----------SFEFGGHEIRLLSNAYEAAKEHWELNRHFDREILEAVKSD 89
Query: 155 MESMVPLPGIYDPDFIAANQGSRANNV-----IKG---TKKEQMLQIIKDIREFKEKNKV 206
+E +V G A N GS + ++G + E + +I +DI+ F +
Sbjct: 90 LEGIVARKGT------ALNCGSGIKELGDIKTLEGEGLSLAEMVSRIEEDIKSFAD---- 139
Query: 207 DRVVVLWTANTERYSNVIVGLNDTVENLLASLDKNEAEI-SPSTLYAIACVLENIPFING 265
D VV+ A+TE N + ++E +D++ E S S LYA A + +P+ N
Sbjct: 140 DETVVINVASTEPLPNYSEEYHGSLEGFERMIDEDRKEYASASMLYAYAALKLGLPYANF 199
Query: 266 SPQ-NTFVPGLIDLAIRRNCLIGGDDFKSGQTKMKSVLVDFLVGAGIKPTSIVSYNHLGN 324
+P + +P L +LA ++ G+D K+G+T +K+ L ++ +SY LG+
Sbjct: 200 TPSPGSAIPALKELAEKKGVPHAGNDGKTGETLVKTTLAPMFAYRNMEVVGWMSYAILGD 259
Query: 325 NDGMNLSAPQTFRSKEISKSNVVDDMVSSNGILYGPGEHPDHVVVIKYVPYVGDSKRAMD 384
DG LSA SK +SK V++ M+ G P + I+Y P + D+K A D
Sbjct: 260 YDGKVLSARDNKESKVLSKDKVLEKML---------GYSPYSITEIQYFPSLVDNKTAFD 310
Query: 385 EYTSEIFMGGKNTIVLHNTCEDSLLAAPIVLDL 417
+ F+G D+++AAP++LD+
Sbjct: 311 FVHFKGFLGKLMKFYFIWDAIDAIVAAPLILDI 343
>pdb|3N6H|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING PROTEIN From Actinobacillus Succinogenes
130z Complexed With MagnesiumSULFATE
pdb|3N6H|B Chain B, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING PROTEIN From Actinobacillus Succinogenes
130z Complexed With MagnesiumSULFATE
pdb|3N6H|C Chain C, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING PROTEIN From Actinobacillus Succinogenes
130z Complexed With MagnesiumSULFATE
pdb|3N6H|D Chain D, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING PROTEIN From Actinobacillus Succinogenes
130z Complexed With MagnesiumSULFATE
pdb|3N6J|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING PROTEIN From Actinobacillus Succinogenes
130z
pdb|3N6J|B Chain B, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING PROTEIN From Actinobacillus Succinogenes
130z
pdb|3N6J|C Chain C, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING PROTEIN From Actinobacillus Succinogenes
130z
pdb|3N6J|D Chain D, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING PROTEIN From Actinobacillus Succinogenes
130z
pdb|3PFR|A Chain A, Crystal Structure Of D-Glucarate Dehydratase Related
Protein From Actinobacillus Succinogenes Complexed With
D-Glucarate
pdb|3PFR|B Chain B, Crystal Structure Of D-Glucarate Dehydratase Related
Protein From Actinobacillus Succinogenes Complexed With
D-Glucarate
pdb|3PFR|C Chain C, Crystal Structure Of D-Glucarate Dehydratase Related
Protein From Actinobacillus Succinogenes Complexed With
D-Glucarate
pdb|3PFR|D Chain D, Crystal Structure Of D-Glucarate Dehydratase Related
Protein From Actinobacillus Succinogenes Complexed With
D-Glucarate
Length = 455
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 357 LYGPGEHPDHVVVIKYVPYVGDSK 380
L GPG+ D V V+ Y+ YVGD K
Sbjct: 136 LLGPGKQRDEVTVLGYLFYVGDDK 159
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,237,820
Number of Sequences: 62578
Number of extensions: 590369
Number of successful extensions: 1474
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1443
Number of HSP's gapped (non-prelim): 9
length of query: 494
length of database: 14,973,337
effective HSP length: 103
effective length of query: 391
effective length of database: 8,527,803
effective search space: 3334370973
effective search space used: 3334370973
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)