Query 011047
Match_columns 494
No_of_seqs 158 out of 468
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 07:31:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011047.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011047hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02438 inositol-3-phosphate 100.0 2E-170 5E-175 1328.2 41.8 449 43-494 62-510 (510)
2 KOG0693 Myo-inositol-1-phospha 100.0 3E-170 6E-175 1280.3 28.0 449 43-494 61-510 (512)
3 PF07994 NAD_binding_5: Myo-in 100.0 4.3E-89 9.2E-94 683.9 17.5 289 43-478 1-295 (295)
4 COG1260 INO1 Myo-inositol-1-ph 100.0 3.6E-78 7.7E-83 610.8 23.5 351 41-478 4-361 (362)
5 TIGR03450 mycothiol_INO1 inosi 100.0 4.3E-70 9.2E-75 552.2 24.2 213 245-477 136-351 (351)
6 PF01658 Inos-1-P_synth: Myo-i 100.0 1.6E-44 3.4E-49 317.9 8.1 112 294-407 1-112 (112)
7 cd00423 Pterin_binding Pterin 81.3 16 0.00035 36.5 10.8 89 198-289 31-126 (258)
8 TIGR01496 DHPS dihydropteroate 80.2 17 0.00037 36.6 10.6 96 191-290 23-125 (257)
9 TIGR01285 nifN nitrogenase mol 76.4 9.9 0.00021 41.0 8.1 117 202-320 191-344 (432)
10 PRK06349 homoserine dehydrogen 75.5 17 0.00036 39.1 9.5 127 187-318 16-156 (426)
11 cd00739 DHPS DHPS subgroup of 73.3 43 0.00093 33.9 11.3 92 197-291 30-128 (257)
12 PRK12301 bssS biofilm formatio 70.2 3.3 7.1E-05 35.7 2.2 15 124-138 14-28 (84)
13 PRK08374 homoserine dehydrogen 65.7 70 0.0015 33.5 11.3 130 187-318 15-174 (336)
14 PF01081 Aldolase: KDPG and KH 64.8 4.7 0.0001 39.5 2.4 62 252-323 73-134 (196)
15 PF00809 Pterin_bind: Pterin b 63.6 35 0.00075 33.2 8.1 131 184-317 12-167 (210)
16 PRK07114 keto-hydroxyglutarate 62.3 8.1 0.00018 38.5 3.5 67 245-323 79-145 (222)
17 PRK06552 keto-hydroxyglutarate 62.1 8.2 0.00018 38.0 3.5 57 252-318 81-137 (213)
18 PRK06015 keto-hydroxyglutarate 62.1 8.4 0.00018 37.9 3.5 63 252-324 69-131 (201)
19 PRK06270 homoserine dehydrogen 61.5 72 0.0016 33.3 10.5 69 248-318 107-177 (341)
20 PRK13753 dihydropteroate synth 60.9 25 0.00054 36.4 6.8 106 178-287 12-123 (279)
21 cd00381 IMPDH IMPDH: The catal 59.8 88 0.0019 32.6 10.7 140 121-290 37-204 (325)
22 TIGR01182 eda Entner-Doudoroff 59.3 9.7 0.00021 37.5 3.5 67 246-324 69-135 (204)
23 cd01966 Nitrogenase_NifN_1 Nit 56.9 84 0.0018 33.8 10.3 121 197-319 176-332 (417)
24 COG1168 MalY Bifunctional PLP- 55.5 13 0.00029 40.1 3.9 67 260-326 160-241 (388)
25 PRK04452 acetyl-CoA decarbonyl 54.8 64 0.0014 34.1 8.7 37 102-138 31-67 (319)
26 cd03466 Nitrogenase_NifN_2 Nit 54.7 72 0.0016 34.3 9.3 118 197-317 173-330 (429)
27 PRK11613 folP dihydropteroate 53.5 67 0.0015 33.2 8.5 109 176-288 23-138 (282)
28 PRK14477 bifunctional nitrogen 51.7 63 0.0014 38.5 8.9 69 198-267 664-742 (917)
29 PRK05718 keto-hydroxyglutarate 50.9 17 0.00037 35.9 3.6 59 251-320 79-138 (212)
30 COG0800 Eda 2-keto-3-deoxy-6-p 49.6 18 0.00039 36.2 3.5 70 245-326 73-142 (211)
31 TIGR00284 dihydropteroate synt 48.8 62 0.0013 36.1 7.9 111 191-311 165-280 (499)
32 PRK14194 bifunctional 5,10-met 46.8 94 0.002 32.6 8.4 84 226-316 102-189 (301)
33 cd01974 Nitrogenase_MoFe_beta 45.3 1.4E+02 0.003 32.2 9.6 198 119-321 63-337 (435)
34 PRK14476 nitrogenase molybdenu 44.4 86 0.0019 34.2 8.0 121 198-320 188-344 (455)
35 cd01977 Nitrogenase_VFe_alpha 44.1 1E+02 0.0022 32.9 8.5 18 117-138 63-80 (415)
36 TIGR03151 enACPred_II putative 42.4 3.7E+02 0.0079 27.9 11.9 44 160-204 18-61 (307)
37 cd01976 Nitrogenase_MoFe_alpha 42.1 60 0.0013 34.9 6.4 125 116-287 73-202 (421)
38 PF03932 CutC: CutC family; I 40.4 34 0.00075 33.7 3.9 90 187-283 68-168 (201)
39 COG2069 CdhD CO dehydrogenase/ 37.0 5.7E+02 0.012 27.6 13.3 144 102-321 108-262 (403)
40 cd01965 Nitrogenase_MoFe_beta_ 37.0 2.5E+02 0.0054 30.0 10.0 122 197-319 174-331 (428)
41 TIGR02931 anfK_nitrog Fe-only 36.8 1.3E+02 0.0028 33.0 7.9 86 198-286 188-287 (461)
42 PRK09466 metL bifunctional asp 35.9 4.2E+02 0.009 31.5 12.3 129 186-319 470-629 (810)
43 PRK14179 bifunctional 5,10-met 35.3 1.8E+02 0.0039 30.3 8.3 102 198-316 83-188 (284)
44 COG2513 PrpB PEP phosphonomuta 35.3 1.7E+02 0.0037 30.8 8.1 140 130-317 92-234 (289)
45 TIGR01286 nifK nitrogenase mol 34.8 2.1E+02 0.0045 32.0 9.3 206 109-320 106-396 (515)
46 COG2403 Predicted GTPase [Gene 33.6 90 0.0019 34.3 5.9 89 231-324 71-169 (449)
47 PF06564 YhjQ: YhjQ protein; 33.2 24 0.00052 35.8 1.6 27 45-71 4-30 (243)
48 PRK14189 bifunctional 5,10-met 32.8 2.5E+02 0.0053 29.3 8.8 83 227-316 102-188 (285)
49 PRK08649 inosine 5-monophospha 31.9 3E+02 0.0066 29.5 9.6 57 203-263 152-212 (368)
50 PRK14191 bifunctional 5,10-met 31.7 3.1E+02 0.0068 28.6 9.4 84 226-316 100-187 (285)
51 PRK11320 prpB 2-methylisocitra 31.6 2.8E+02 0.006 29.0 9.0 105 185-318 131-235 (292)
52 PRK14453 chloramphenicol/florf 29.7 1.5E+02 0.0033 31.5 6.8 62 168-239 210-271 (347)
53 TIGR01282 nifD nitrogenase mol 29.5 90 0.002 34.2 5.3 153 117-315 107-283 (466)
54 PRK07165 F0F1 ATP synthase sub 29.4 36 0.00078 38.1 2.3 121 184-313 180-331 (507)
55 KOG1402 Ornithine aminotransfe 29.1 89 0.0019 33.9 5.0 163 126-295 54-253 (427)
56 PRK14172 bifunctional 5,10-met 29.0 2.5E+02 0.0054 29.2 8.1 103 196-316 81-188 (278)
57 PF14488 DUF4434: Domain of un 28.4 1.3E+02 0.0029 28.4 5.7 67 191-267 20-86 (166)
58 PRK14188 bifunctional 5,10-met 27.6 3.4E+02 0.0073 28.4 8.9 103 197-316 82-188 (296)
59 COG0773 MurC UDP-N-acetylmuram 26.7 30 0.00066 38.3 1.1 80 238-333 76-164 (459)
60 PF13991 BssS: BssS protein fa 26.5 21 0.00045 30.3 -0.1 15 124-138 4-18 (73)
61 TIGR01302 IMP_dehydrog inosine 26.4 98 0.0021 33.7 4.9 77 204-290 235-334 (450)
62 PRK14457 ribosomal RNA large s 26.3 2E+02 0.0044 30.5 7.1 40 190-238 238-277 (345)
63 PRK14571 D-alanyl-alanine synt 26.3 2.1E+02 0.0045 28.7 6.9 107 208-319 2-115 (299)
64 PRK14467 ribosomal RNA large s 26.2 2.3E+02 0.0051 30.1 7.5 93 185-299 230-341 (348)
65 TIGR01698 PUNP purine nucleoti 26.0 2.1E+02 0.0046 29.0 6.8 78 190-285 68-145 (237)
66 TIGR01862 N2-ase-Ialpha nitrog 25.3 83 0.0018 34.1 4.1 82 188-286 135-220 (443)
67 cd01972 Nitrogenase_VnfE_like 25.1 84 0.0018 33.7 4.1 122 116-286 64-195 (426)
68 CHL00072 chlL photochlorophyll 24.8 4.8E+02 0.01 26.6 9.3 127 187-332 153-286 (290)
69 PRK10792 bifunctional 5,10-met 24.6 4.1E+02 0.0089 27.7 8.8 84 227-318 103-191 (285)
70 PRK14171 bifunctional 5,10-met 24.6 2.5E+02 0.0054 29.4 7.2 83 227-315 102-188 (288)
71 PRK14166 bifunctional 5,10-met 24.2 3.5E+02 0.0075 28.3 8.1 81 227-315 100-186 (282)
72 COG4992 ArgD Ornithine/acetylo 24.1 2.6E+02 0.0056 30.8 7.4 171 139-324 55-257 (404)
73 PF13500 AAA_26: AAA domain; P 23.9 49 0.0011 31.0 1.9 33 282-314 1-33 (199)
74 TIGR00048 radical SAM enzyme, 23.6 2.9E+02 0.0062 29.4 7.6 39 190-237 241-279 (355)
75 PRK13343 F0F1 ATP synthase sub 22.9 58 0.0013 36.4 2.4 88 184-274 199-318 (502)
76 PRK14468 ribosomal RNA large s 22.8 3.2E+02 0.0069 28.9 7.7 41 189-238 228-268 (343)
77 cd00808 GluRS_core catalytic c 22.6 2.7E+02 0.0058 28.2 6.8 66 264-333 101-166 (239)
78 COG3367 Uncharacterized conser 22.5 1.5E+02 0.0034 31.7 5.3 87 245-331 82-200 (339)
79 PRK14182 bifunctional 5,10-met 22.3 4.6E+02 0.0099 27.4 8.6 105 196-316 79-187 (282)
80 PRK14180 bifunctional 5,10-met 22.2 4.1E+02 0.009 27.7 8.3 84 227-318 101-190 (282)
81 PRK14186 bifunctional 5,10-met 21.9 4.1E+02 0.0089 27.9 8.2 82 227-316 102-188 (297)
82 PF04705 TSNR_N: Thiostrepton- 21.5 39 0.00085 30.7 0.6 31 254-287 42-77 (115)
83 PRK14178 bifunctional 5,10-met 21.2 4.4E+02 0.0095 27.5 8.2 86 226-318 95-184 (279)
84 PRK14169 bifunctional 5,10-met 21.2 4E+02 0.0088 27.8 7.9 84 226-316 99-186 (282)
85 PRK06740 histidinol-phosphatas 20.9 2.9E+02 0.0062 29.0 6.9 65 252-318 245-322 (331)
86 TIGR01060 eno phosphopyruvate 20.8 7.4E+02 0.016 26.9 10.2 106 185-300 211-323 (425)
87 TIGR03496 FliI_clade1 flagella 20.3 89 0.0019 34.0 3.1 24 198-221 183-206 (411)
88 PLN02897 tetrahydrofolate dehy 20.3 4.5E+02 0.0097 28.4 8.2 107 195-316 134-244 (345)
89 COG0771 MurD UDP-N-acetylmuram 20.1 3.5E+02 0.0077 30.0 7.6 69 243-323 77-147 (448)
90 PF09617 Cas_GSU0053: CRISPR-a 20.1 44 0.00095 32.3 0.7 13 116-128 129-141 (169)
No 1
>PLN02438 inositol-3-phosphate synthase
Probab=100.00 E-value=2.1e-170 Score=1328.19 Aligned_cols=449 Identities=88% Similarity=1.316 Sum_probs=444.2
Q ss_pred hhhhhhccCcchhHHHHHHHHhhhhhhcCCcccccccccccccccCcccccceeccccCCcccccccccCCCCCCCCCee
Q 011047 43 LNLGLCLWVGVETTAQLSRVVLSRIESEGISWATKDTVQQANYFGSLTQASAIRVGSYNGEEIYAPFKSILPMVNPDDIV 122 (494)
Q Consensus 43 lGv~lvG~gG~v~TT~~aG~~A~~~~r~gl~w~tk~g~~~~n~~Gsvtq~~t~rlg~~~~~~~~~p~~~~lPl~~~~dlV 122 (494)
+||||||||||||||++||++|| |+||+|+||+|+++|||||||||+||||||..+++++|+||+++|||++|||||
T Consensus 62 ~Gv~LVG~gGn~~TT~~aG~~A~---r~gl~~~tk~g~~~~n~~Gsvtq~st~~lG~~~~~~~~~pf~~~lpl~~p~dlV 138 (510)
T PLN02438 62 LGVMLVGWGGNNGSTLTAGVIAN---KEGISWATKDGVQKANYFGSLTQASTIRVGSFNGEEIYAPFKSLLPMVNPNDIV 138 (510)
T ss_pred eEEEEecCCchHHHHHHHHHHHH---HcCCCcccccccccCCCcceEEeeeeeecccccCcccccchhhcCCCCCccceE
Confidence 79999999999999999999999 999999999999999999999999999999877889999999999999999999
Q ss_pred eecccCCCCCHHHHHHHCCCCChhHHHHhHHHhhhcCCCCCCCChhhHhhhccccCCCCccCCHHHHHHHHHHHHHHHHH
Q 011047 123 FGGWDISDMNLADAMARARVFDIDLQKQLRPYMESMVPLPGIYDPDFIAANQGSRANNVIKGTKKEQMLQIIKDIREFKE 202 (494)
Q Consensus 123 fGGwDI~~~~l~ea~~~a~Vl~~~l~~~v~~~L~~i~p~p~v~~~~fia~nq~~ra~nv~~gt~~e~ve~ir~DIr~Fk~ 202 (494)
||||||+++||++||.||+|||++||+||+|+|++++|+||||||+||++||++||+||++|+++|++||||+|||+||+
T Consensus 139 fGGwDI~~~~l~~a~~ra~VLd~~l~~~v~~~l~~i~p~p~v~~p~fia~nq~~ra~n~~~g~k~e~ve~ir~DIr~Fk~ 218 (510)
T PLN02438 139 FGGWDISDMNLADAMERAKVLDIDLQKQLRPYMENMVPLPGIYDPDFIAANQGSRANNVIKGTKKEQMDQIRKDIREFKE 218 (510)
T ss_pred EecccCCCCCHHHHHHHcCCCCHHHHHHHHHHHHhCCcCccCcCcccchhccchhhcccccccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCeEEEEEccCCcccccccCCccccHHHHHHhhhcCCCCCChhHHHHHHHHhcCCCeecCCCCCCCchhHHHHHHHh
Q 011047 203 KNKVDRVVVLWTANTERYSNVIVGLNDTVENLLASLDKNEAEISPSTLYAIACVLENIPFINGSPQNTFVPGLIDLAIRR 282 (494)
Q Consensus 203 ~~~ld~vVVlw~AsTE~~~~~~~~~~~t~~~l~~al~~n~~~i~aS~~YA~AAl~aG~~fINgtP~~t~ipal~elae~~ 282 (494)
+|||||||||||||||||+++.+++|+|+++|+++|++|+++||||++||+||++||||||||+||++++|+++|||+++
T Consensus 219 ~n~ld~vVVlwtAsTEr~~~~~~~~~~t~~~l~~ai~~~~~eispS~~YA~AAl~eG~~fVNgsP~~t~vP~~~elA~~~ 298 (510)
T PLN02438 219 KNKVDKVVVLWTANTERYSNVVVGLNDTMENLLASIEKDEAEISPSTLYALACILEGVPFINGSPQNTFVPGVIELAVKK 298 (510)
T ss_pred HhCCCeEEEEECCCCCCCCcCCCcccCCHHHHHHHHhcCCCcCChHHHHHHHHHHcCCCeEecCCccccChhhHHHHHHc
Confidence 99999999999999999999898999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCCcchhHHHHHHHHHhcCCceeEEEeeeecCCccccCCCCcccchhhhhhhhhHHhhhhhcCCccCCCCC
Q 011047 283 NCLIGGDDFKSGQTKMKSVLVDFLVGAGIKPTSIVSYNHLGNNDGMNLSAPQTFRSKEISKSNVVDDMVSSNGILYGPGE 362 (494)
Q Consensus 283 gvpi~GdD~KSGqT~lks~La~~l~~RGlkv~s~~s~NilGN~Dg~nL~~p~~~~SKeiSKs~vv~dil~~~~~ly~~g~ 362 (494)
|+||+|||||||||++||+|++||++||++|.+|||||||||+||+||++|+||+|||+||++||+||++++.+||++|+
T Consensus 299 gvpi~GDD~KSGqT~~ksvLa~~l~~RGlkv~s~~s~N~lGN~Dg~nLs~p~~~~SKeiSKs~vV~dil~~~~~ly~~g~ 378 (510)
T PLN02438 299 NSLIGGDDFKSGQTKMKSVLVDFLVGAGIKPTSIVSYNHLGNNDGMNLSAPQTFRSKEISKSNVVDDMVASNSILYEPGE 378 (510)
T ss_pred CCCEecccccCCCchhHHHHHHHHHHcCCceeeEEEEeccCcchhhhhCCHhHhhhhhhhHHHHHHHHHcccccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeeecccCCCCCceeEEEEEeeeecCCCeEEEEEEeeeccccchhhHHHhHHHHHHHHHHhhhhhcCCCcccccCC
Q 011047 363 HPDHVVVIKYVPYVGDSKRAMDEYTSEIFMGGKNTIVLHNTCEDSLLAAPIVLDLVLLAELSTRIQLKAEGEGKFHSFHP 442 (494)
Q Consensus 363 ~~~h~v~I~YvP~lGD~K~A~d~i~~~gFlG~~~ti~i~~~c~DS~lAApLviDLirla~la~r~g~~~~~~~~~~~~g~ 442 (494)
+++|+++|+||||+||+|+|||+|++++|||+||+|+++|+|+||+||||||||||||++||+|++++.+++++|+++|+
T Consensus 379 ~~~h~v~I~YvP~lGD~K~A~d~~~~~~FlG~~~~i~~~~~ceDS~lAAPlvlDLvrla~la~R~~~~~~~~~~~~~~~~ 458 (510)
T PLN02438 379 HPDHVVVIKYVPYVGDSKRAMDEYTSEIFMGGKNTIVMHNTCEDSLLAAPIILDLVLLAELSTRIQLKAEGEEKFHSFHP 458 (510)
T ss_pred CCceEeeccccCcCCCcEEEEEEEEeeecCCCceEEEEEEEEecchhhHHHHHHHHHHHHHHHhhccccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998778889999999
Q ss_pred chhhhhhhccCCCCCCCCCccCcHHHHHHHHHHHHHHhcCCCCCCccccccC
Q 011047 443 VATILSYLTKAPLVPPGTPVVNALSKQRAMLENILRACVGLAPENNMILEYK 494 (494)
Q Consensus 443 V~s~lsy~fKsP~~~~g~~~~~~l~~Q~~~L~n~lr~~~g~~~~~~~~le~~ 494 (494)
|+++||||||+|++++|++++|+|++|+++|+||+|+|+|++|++||+||||
T Consensus 459 v~~~lsy~~KaPl~~~G~~~~~~l~~Q~~~L~n~~r~~~gl~~~~~~~le~~ 510 (510)
T PLN02438 459 VATLLSYLTKAPLVPPGTPVVNALAKQRAMLENILRACVGLAPENNMLLEYK 510 (510)
T ss_pred hhhHHHHHccCCCCCCCCCccchHHHHHHHHHHHHHHHhCCCCCCcccccCC
Confidence 9999999999999999999999999999999999999999999999999997
No 2
>KOG0693 consensus Myo-inositol-1-phosphate synthase [Lipid transport and metabolism]
Probab=100.00 E-value=2.6e-170 Score=1280.29 Aligned_cols=449 Identities=82% Similarity=1.249 Sum_probs=443.5
Q ss_pred hhhhhhccCcchhHHHHHHHHhhhhhhcCCcccccccccccccccCcccccceecccc-CCcccccccccCCCCCCCCCe
Q 011047 43 LNLGLCLWVGVETTAQLSRVVLSRIESEGISWATKDTVQQANYFGSLTQASAIRVGSY-NGEEIYAPFKSILPMVNPDDI 121 (494)
Q Consensus 43 lGv~lvG~gG~v~TT~~aG~~A~~~~r~gl~w~tk~g~~~~n~~Gsvtq~~t~rlg~~-~~~~~~~p~~~~lPl~~~~dl 121 (494)
|||||||||||||+|++|+++|| |++++|+||+|+++||||||+||++|+|||.+ +|+++|+|||++|||++|||+
T Consensus 61 lGvmLvG~GGNNGSTlta~v~AN---r~~~~w~tkegv~qaNyfGSlTQastv~lG~da~g~eiy~Pfk~llPmv~Pnd~ 137 (512)
T KOG0693|consen 61 LGVMLVGWGGNNGSTLTASVIAN---REGISWATKEGVQQANYFGSLTQASTVRLGSDANGNEIYAPFKSLLPMVSPNDL 137 (512)
T ss_pred ceEEEEEecCCCcceeehhhhhc---cccccccccccccccccceeeeeeeEEEeeecCCCCEEEeEHHHhCCccCccce
Confidence 79999999999999999999999 99999999999999999999999999999986 678999999999999999999
Q ss_pred eeecccCCCCCHHHHHHHCCCCChhHHHHhHHHhhhcCCCCCCCChhhHhhhccccCCCCccCCHHHHHHHHHHHHHHHH
Q 011047 122 VFGGWDISDMNLADAMARARVFDIDLQKQLRPYMESMVPLPGIYDPDFIAANQGSRANNVIKGTKKEQMLQIIKDIREFK 201 (494)
Q Consensus 122 VfGGwDI~~~~l~ea~~~a~Vl~~~l~~~v~~~L~~i~p~p~v~~~~fia~nq~~ra~nv~~gt~~e~ve~ir~DIr~Fk 201 (494)
||+||||++.||||||.||+|||++||+|+||+|+.++|+|+||||||||+||.+||+||++||++|++||||+|||+||
T Consensus 138 v~~GWDIs~~nL~eAM~RakVld~~LQ~ql~p~me~~~PlPsIy~PdFIAaNQ~~RAnnvI~g~~keqle~Ir~Dir~Fk 217 (512)
T KOG0693|consen 138 VFSGWDISDMNLAEAMARAKVLDIDLQKQLRPFMENLVPLPSIYDPDFIAANQGSRANNVIKGTKKEQLEQIRKDIREFK 217 (512)
T ss_pred EEccccCCCCcHHHHHhhhhccCHHHHHHHHHHHhhccCCCcccCcchhhcCccccccccccCchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCeEEEEEccCCcccccccCCccccHHHHHHhhhcCCCCCChhHHHHHHHHhcCCCeecCCCCCCCchhHHHHHHH
Q 011047 202 EKNKVDRVVVLWTANTERYSNVIVGLNDTVENLLASLDKNEAEISPSTLYAIACVLENIPFINGSPQNTFVPGLIDLAIR 281 (494)
Q Consensus 202 ~~~~ld~vVVlw~AsTE~~~~~~~~~~~t~~~l~~al~~n~~~i~aS~~YA~AAl~aG~~fINgtP~~t~ipal~elae~ 281 (494)
++|++|+|||+||||||||+++.+|+|+|.|+|.++|+.||.||+||++||.|+++|||+||||+|||||+|+++|||++
T Consensus 218 e~~~ldkViVLWTANTERy~~V~~GlNdT~enl~~si~~~~~EisPStifA~AsilEg~~yiNGSPQNTfVPGlielA~~ 297 (512)
T KOG0693|consen 218 EENKLDKVIVLWTANTERYSNVIPGLNDTAENLLESIEKDESEISPSTIFAIASILEGCPYINGSPQNTFVPGLIELAER 297 (512)
T ss_pred HhcCCceEEEEEecCcceeeccccccchHHHHHHHHHhcCccccChHHHHHHHHHHcCCCcccCCCccccchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCccccCCCCCCcchhHHHHHHHHHhcCCceeEEEeeeecCCccccCCCCcccchhhhhhhhhHHhhhhhcCCccCCCC
Q 011047 282 RNCLIGGDDFKSGQTKMKSVLVDFLVGAGIKPTSIVSYNHLGNNDGMNLSAPQTFRSKEISKSNVVDDMVSSNGILYGPG 361 (494)
Q Consensus 282 ~gvpi~GdD~KSGqT~lks~La~~l~~RGlkv~s~~s~NilGN~Dg~nL~~p~~~~SKeiSKs~vv~dil~~~~~ly~~g 361 (494)
++++|+|||||||||++||+|++||+.+|+|+.||+||||||||||+||++|+||||||||||+|||||+++|.+||.||
T Consensus 298 ~~vfigGDDfKSGQTK~KSvlvdFLVgaGiKp~SIvSYNHLGNNDG~NLSap~qFRSKEISKSnVvDDmv~SN~iLy~pg 377 (512)
T KOG0693|consen 298 HNVFIGGDDFKSGQTKMKSVLVDFLVGAGIKPTSIVSYNHLGNNDGMNLSAPQQFRSKEISKSNVVDDMVASNGILYEPG 377 (512)
T ss_pred hCceeccccccccchhHHHHHHHHHhccCCCceeEeeeccccCCCcccccchhhhhhhhcchhhhhHHHHhcCCcccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceeeecccCCCCCceeEEEEEeeeecCCCeEEEEEEeeeccccchhhHHHhHHHHHHHHHHhhhhhcCCCcccccC
Q 011047 362 EHPDHVVVIKYVPYVGDSKRAMDEYTSEIFMGGKNTIVLHNTCEDSLLAAPIVLDLVLLAELSTRIQLKAEGEGKFHSFH 441 (494)
Q Consensus 362 ~~~~h~v~I~YvP~lGD~K~A~d~i~~~gFlG~~~ti~i~~~c~DS~lAApLviDLirla~la~r~g~~~~~~~~~~~~g 441 (494)
++|||||+|+||||+||+|+|||||++++|||+++||.+|++||||+||||||+||+.++||++|++++..++..+..++
T Consensus 378 e~pDH~vVIKYvpyVgDSKrAmDEYtsei~mGG~ntiviHNtCEDSLLA~PlilDL~lltEl~tRvs~k~~de~k~~~Fh 457 (512)
T KOG0693|consen 378 EHPDHCVVIKYVPYVGDSKRAMDEYTSEIFMGGKNTIVIHNTCEDSLLAAPLILDLVLLTELSTRVSFKAEDEGKFHSFH 457 (512)
T ss_pred CCCCeEEEEEecccccchhhHHHHHHHHHhhCCcceEEEeccchHhhhhhhHHHHHHHHHHHhhheEeeecCCCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999976666677799
Q ss_pred CchhhhhhhccCCCCCCCCCccCcHHHHHHHHHHHHHHhcCCCCCCccccccC
Q 011047 442 PVATILSYLTKAPLVPPGTPVVNALSKQRAMLENILRACVGLAPENNMILEYK 494 (494)
Q Consensus 442 ~V~s~lsy~fKsP~~~~g~~~~~~l~~Q~~~L~n~lr~~~g~~~~~~~~le~~ 494 (494)
+|+++|||++|+|++++|++++|+|++||++|+|++|+|+|+||+|||.||||
T Consensus 458 pVltlLSyl~KAPlvppGtpvvNal~kQra~lenilracvGlpp~n~m~lE~~ 510 (512)
T KOG0693|consen 458 PVLTLLSYLLKAPLVPPGTPVVNALSKQRAMLENILRACVGLPPENNMILEFK 510 (512)
T ss_pred cHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHHHHHHHhcCCCCccceeeeee
Confidence 99999999999999999999999999999999999999999999999999986
No 3
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=100.00 E-value=4.3e-89 Score=683.89 Aligned_cols=289 Identities=45% Similarity=0.745 Sum_probs=263.6
Q ss_pred hhhhhhccCcchhHHHHHHHHhhhhhhcCCcccccccccccccccCcccccceeccccCCcccccccccCCCCCCCCCee
Q 011047 43 LNLGLCLWVGVETTAQLSRVVLSRIESEGISWATKDTVQQANYFGSLTQASAIRVGSYNGEEIYAPFKSILPMVNPDDIV 122 (494)
Q Consensus 43 lGv~lvG~gG~v~TT~~aG~~A~~~~r~gl~w~tk~g~~~~n~~Gsvtq~~t~rlg~~~~~~~~~p~~~~lPl~~~~dlV 122 (494)
+||||||||||||||+++|++|+ |+|++|++ ||+||++++|+| +++|+|||+++||+++||+|
T Consensus 1 igV~lvG~~GnvaTt~v~Gi~a~---k~g~~~~~----------G~vt~~~~~~lG----~~~~~~~~~~~p~~~~d~~v 63 (295)
T PF07994_consen 1 IGVALVGAGGNVATTLVAGIEAN---KRGLAWPT----------GSVTQLMTFRLG----EEVYVPFKDLLPLAPPDDLV 63 (295)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHH---HTTSSCCT----------T-CCTCCCCEEC-----EEEEETTCTSTCCGGGEEE
T ss_pred CeEEEEeCCCcHHHHHHHHHHHH---HcCCCCCC----------Cccccccccccc----ccccccccccCCCCCCCceE
Confidence 59999999999999999999999 99999988 999999999999 79999999999999999999
Q ss_pred eecccCCCCCHHHHHHHCCCCChhHHHHhHHHhhhcCCCCCCCCh-hhHhhhccccCCCCcc----CCHHHHHHHHHHHH
Q 011047 123 FGGWDISDMNLADAMARARVFDIDLQKQLRPYMESMVPLPGIYDP-DFIAANQGSRANNVIK----GTKKEQMLQIIKDI 197 (494)
Q Consensus 123 fGGwDI~~~~l~ea~~~a~Vl~~~l~~~v~~~L~~i~p~p~v~~~-~fia~nq~~ra~nv~~----gt~~e~ve~ir~DI 197 (494)
||||||+..+++++|.+|+|++++++++++++|+ |+||+| +||+.+|..|.||+.+ +++++++|++|+||
T Consensus 64 vgg~DI~~~k~~~~l~~a~v~~~~~~~~v~~~l~-----~~v~~~~~~v~v~~~~~~d~~~~~~~~~~~~~~~e~~~~DI 138 (295)
T PF07994_consen 64 VGGWDIDERKVGEALSEAIVLDPNLLEQVKPDLE-----PSVYPPKDGVAVNQGPRLDGVAPLKEGESKREQVEQIREDI 138 (295)
T ss_dssp EEEEESBTTTCCCCHHHHTTSCHHHHHHCCHHHC-----TB--EC-GGTCCECCCCTTSCCCSGGCSTHHHHHHHHHHHH
T ss_pred EEEeCCCCccHHHHHHHhccCCccccHHHHHHhh-----hhccCccccccccccccCCCccccccccchHHHHHHHHHHH
Confidence 9999999999999999999999999999999998 899998 9999999999999987 38999999999999
Q ss_pred HHHHHhcCCCeEEEEEccCCcccccccCCccccHHHHHHhhhcCCCCCChhHHHHHHHHhcCCCeecCCCCCCC-chhHH
Q 011047 198 REFKEKNKVDRVVVLWTANTERYSNVIVGLNDTVENLLASLDKNEAEISPSTLYAIACVLENIPFINGSPQNTF-VPGLI 276 (494)
Q Consensus 198 r~Fk~~~~ld~vVVlw~AsTE~~~~~~~~~~~t~~~l~~al~~n~~~i~aS~~YA~AAl~aG~~fINgtP~~t~-ipal~ 276 (494)
++|+++||+|||||||++|||+|++..+++|+|+++||++|++|+++++||++|||||+++||+|||||||++. +|++.
T Consensus 139 ~~f~~~~~~d~vVvvn~asTE~~~~~~~~~~~t~~~l~~al~~~~~~~~aS~~YA~AAl~~g~~fvN~tP~~~a~~P~l~ 218 (295)
T PF07994_consen 139 RDFKKENGLDRVVVVNVASTERYIPVIPGVHDTLEALEKALDENDPEISASMLYAYAALEAGVPFVNGTPSNIADDPALV 218 (295)
T ss_dssp HHHHHHTT-SCEEEEE-SSCC-S---CCCCCSSHHHHHHHHHTT-TTHHHHHHHHHHHHHTTEEEEE-SSSTTTTSHHHH
T ss_pred HHHHHHhCCCcEEEEECCCCCCCCCCCccccCCHHHHHHHhhcCCCcCChHHHHHHHHHHCCCCeEeccCccccCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887 99999
Q ss_pred HHHHHhCCccccCCCCCCcchhHHHHHHHHHhcCCceeEEEeeeecCCccccCCCCcccchhhhhhhhhHHhhhhhcCCc
Q 011047 277 DLAIRRNCLIGGDDFKSGQTKMKSVLVDFLVGAGIKPTSIVSYNHLGNNDGMNLSAPQTFRSKEISKSNVVDDMVSSNGI 356 (494)
Q Consensus 277 elae~~gvpi~GdD~KSGqT~lks~La~~l~~RGlkv~s~~s~NilGN~Dg~nL~~p~~~~SKeiSKs~vv~dil~~~~~ 356 (494)
|+|+++|+||+||||||
T Consensus 219 ela~~~gvpi~GdD~KT--------------------------------------------------------------- 235 (295)
T PF07994_consen 219 ELAEEKGVPIAGDDGKT--------------------------------------------------------------- 235 (295)
T ss_dssp HHHHHHTEEEEESSBS----------------------------------------------------------------
T ss_pred HHHHHcCCCeecchHhh---------------------------------------------------------------
Confidence 99999999999999999
Q ss_pred cCCCCCCCcceeeecccCCCCCceeEEEEEeeeecCCCeEEEEEEeeeccccchhhHHHhHHHHHHHHHHhhhhhcCCCc
Q 011047 357 LYGPGEHPDHVVVIKYVPYVGDSKRAMDEYTSEIFMGGKNTIVLHNTCEDSLLAAPIVLDLVLLAELSTRIQLKAEGEGK 436 (494)
Q Consensus 357 ly~~g~~~~h~v~I~YvP~lGD~K~A~d~i~~~gFlG~~~ti~i~~~c~DS~lAApLviDLirla~la~r~g~~~~~~~~ 436 (494)
+|||||||||+||+|+|+|+|
T Consensus 236 ---------------------------------------------------~lAAplvlDLirl~~la~r~g-------- 256 (295)
T PF07994_consen 236 ---------------------------------------------------PLAAPLVLDLIRLAKLALRRG-------- 256 (295)
T ss_dssp ---------------------------------------------------HHHHHHHHHHHHHHHHHHHTT--------
T ss_pred ---------------------------------------------------hhhhHHHHHHHHHHHHHHHcC--------
Confidence 999999999999999999987
Q ss_pred ccccCCchhhhhhhccCCCCCCCCCccCcHHHHHHHHHHHHH
Q 011047 437 FHSFHPVATILSYLTKAPLVPPGTPVVNALSKQRAMLENILR 478 (494)
Q Consensus 437 ~~~~g~V~s~lsy~fKsP~~~~g~~~~~~l~~Q~~~L~n~lr 478 (494)
++||+++||||||+|++++|.+++|++++|+++|+||+|
T Consensus 257 ---~~Gv~~~ls~ffK~P~~~~g~~~~~~l~~q~~~L~~~~R 295 (295)
T PF07994_consen 257 ---MGGVQEWLSFFFKSPMVPPGPPQEHDLFEQYEMLENFLR 295 (295)
T ss_dssp ---S-EEHHHHHHHBSS-T--TTSTT--HHHHHHHHHHHHHH
T ss_pred ---CCChhHHHHHHhcCCCccCCCCCCCcHHHHHHHHHHHhC
Confidence 345999999999999999999999999999999999998
No 4
>COG1260 INO1 Myo-inositol-1-phosphate synthase [Lipid metabolism]
Probab=100.00 E-value=3.6e-78 Score=610.84 Aligned_cols=351 Identities=25% Similarity=0.304 Sum_probs=303.2
Q ss_pred hhhhhhhhccCcchhHHHHHHHHhhhhhhcCCcccccccccccccccCcccccceeccccCCcccccccccCCCCCCCCC
Q 011047 41 MSLNLGLCLWVGVETTAQLSRVVLSRIESEGISWATKDTVQQANYFGSLTQASAIRVGSYNGEEIYAPFKSILPMVNPDD 120 (494)
Q Consensus 41 ~~lGv~lvG~gG~v~TT~~aG~~A~~~~r~gl~w~tk~g~~~~n~~Gsvtq~~t~rlg~~~~~~~~~p~~~~lPl~~~~d 120 (494)
+.++|+++|.| |++|+++.|+... |.+ ...+..|+.+++++ | ..|+|
T Consensus 4 ~~vrv~iiG~G-n~AssLvqgie~~---k~~-e~~~~~g~~~~~~~---------------------------~-~~~~d 50 (362)
T COG1260 4 TMVRVAIIGVG-NCASSLVQGIEYY---KAG-EDEPVPGLMHRDEG---------------------------G-YKVED 50 (362)
T ss_pred ceEEEEEEecc-chHHHHHHHHHHH---hcc-CCCccceecccccc---------------------------C-cCccc
Confidence 45799999996 9999999999999 733 22333333333222 1 13456
Q ss_pred ee-eecccCCCCCHHHHHHHCCCCChhHHHHhHHHhhhcCCCCCCCChhhHhhhccccCCCCccC---CHHHHHHHHHHH
Q 011047 121 IV-FGGWDISDMNLADAMARARVFDIDLQKQLRPYMESMVPLPGIYDPDFIAANQGSRANNVIKG---TKKEQMLQIIKD 196 (494)
Q Consensus 121 lV-fGGwDI~~~~l~ea~~~a~Vl~~~l~~~v~~~L~~i~p~p~v~~~~fia~nq~~ra~nv~~g---t~~e~ve~ir~D 196 (494)
+. ++-|||. ++-+..||+|.++..+. .|.+|.|++++.++..|..-...| ..++.++++
T Consensus 51 ieivaafdvd----------~~KVg~dl~Eai~~~~n----~~~~~~~~~~~~Gv~v~~g~~Ldg~~~~l~~~~~~~--- 113 (362)
T COG1260 51 IEIVAAFDVD----------ARKVGKDLSEAIKAPPN----VTSKIAPDVPKTGVKVRRGPTLDGEGLHLAEYIERI--- 113 (362)
T ss_pred eEEEEeeccc----------HhhcChhHHHHHhcCCC----CCceeecccccCCcEecccCCcCcccchhhhhcchh---
Confidence 54 3557764 34456899999999988 789999999999999997766666 477777777
Q ss_pred HHHHHHhcCCCeEEEEEccCCcccccccCCccccHHHHHHhhhcCCCCCChhHHHHHHHHhcCCCeecCCCCC-CCchhH
Q 011047 197 IREFKEKNKVDRVVVLWTANTERYSNVIVGLNDTVENLLASLDKNEAEISPSTLYAIACVLENIPFINGSPQN-TFVPGL 275 (494)
Q Consensus 197 Ir~Fk~~~~ld~vVVlw~AsTE~~~~~~~~~~~t~~~l~~al~~n~~~i~aS~~YA~AAl~aG~~fINgtP~~-t~ipal 275 (494)
.++++.+-+|.|+|||+++||++.++.| ....+||++||+||+++||||||++|+. ..+|+|
T Consensus 114 -~~~~e~~~~dvv~vL~~~~tE~lvny~p----------------~gs~~a~~~YA~aal~aG~afvN~~P~~iA~dP~~ 176 (362)
T COG1260 114 -QEESEAEAVDVVVVLNVAKTEVLVNYLP----------------VGSESASYFYAAAALAAGVAFVNAIPVFIASDPAW 176 (362)
T ss_pred -hcccccccccceeeecccCccccccccc----------------cchhHHHHHHHHHHHHcCCceecccCccccCCHHH
Confidence 6678888899999999999999997665 3567899999999999999999999964 468999
Q ss_pred HHHHHHhCCccccCCCC--CCcchhHHHHHHHHHhcCCceeEEEeeeecCCccccCCCCcccchhhhhhhhhHHhhhhhc
Q 011047 276 IDLAIRRNCLIGGDDFK--SGQTKMKSVLVDFLVGAGIKPTSIVSYNHLGNNDGMNLSAPQTFRSKEISKSNVVDDMVSS 353 (494)
Q Consensus 276 ~elae~~gvpi~GdD~K--SGqT~lks~La~~l~~RGlkv~s~~s~NilGN~Dg~nL~~p~~~~SKeiSKs~vv~dil~~ 353 (494)
+++|+++|+||+|||+| +|||++|++|++||+.||+||.+|||+||+||+||+||++++|++|||+|||++|++|+++
T Consensus 177 ~~~fee~g~pi~GDD~ksq~GaTi~h~~La~~f~~Rgvkv~~t~Q~NigGN~Dflnl~~r~r~~SKk~SKts~V~sil~~ 256 (362)
T COG1260 177 VELFEEKGLPIAGDDIKSQTGATILHRVLAQLFADRGVKVDRTYQLNIGGNTDFLNLLARERLESKKISKTSAVTSILGY 256 (362)
T ss_pred HHHHHHcCCceeccchhhhcCCceeHHHHHHHHHHcCceeeeEEEEecCCChHHHHhcchhhhhhhhhhHHHHHHHHhcc
Confidence 99999999999999997 5999999999999999999999999999999999999999999999999999999999974
Q ss_pred CCccCCCCCCCcceeeecccCCCCCceeEEEEEeeeecCCCeEEEEEEeeeccccchhhHHHhHHHHHHHHHHhhhhhcC
Q 011047 354 NGILYGPGEHPDHVVVIKYVPYVGDSKRAMDEYTSEIFMGGKNTIVLHNTCEDSLLAAPIVLDLVLLAELSTRIQLKAEG 433 (494)
Q Consensus 354 ~~~ly~~g~~~~h~v~I~YvP~lGD~K~A~d~i~~~gFlG~~~ti~i~~~c~DS~lAApLviDLirla~la~r~g~~~~~ 433 (494)
+-+..++|+++|+|+|||||+|+||++|++++|+|.||+|+++|+|+||+|||||+||++||+|+|.++|
T Consensus 257 -----~~~~~~~~I~ps~yv~~L~D~K~a~~~ie~~~F~g~~~~l~~~l~v~DSpnsagliiD~vR~~k~a~drG----- 326 (362)
T COG1260 257 -----KLGDKPIHIGPSDYVEPLGDRKVAYMRIEGKLFGGVPMNLEIKLEVEDSPNSAGLIIDLVRLAKLALDRG----- 326 (362)
T ss_pred -----cccCCCeEECccccccccCCceEEEEEEEeeecCCCceEEEEEEEeeccchhhHHHHHHHHHHHHHHhcC-----
Confidence 3356789999999999999999999999999999999999999999999999999999999999998777
Q ss_pred CCcccccCCchhhhhhhccCCCCCCCCCccCcHHHHHHHHHHHHH
Q 011047 434 EGKFHSFHPVATILSYLTKAPLVPPGTPVVNALSKQRAMLENILR 478 (494)
Q Consensus 434 ~~~~~~~g~V~s~lsy~fKsP~~~~g~~~~~~l~~Q~~~L~n~lr 478 (494)
.+|+|.+++|||||+|+.|... ...|+.++++|++
T Consensus 327 -----i~G~v~~~say~mK~P~~~~~~-----~~~a~~~leefi~ 361 (362)
T COG1260 327 -----IGGPVYEVSAYFMKNPPTQYPD-----DIEARRALEEFII 361 (362)
T ss_pred -----CCceeeehhhhhccCCCcCCCc-----cHHHHHHHHHHhc
Confidence 5789999999999999988732 2349999999986
No 5
>TIGR03450 mycothiol_INO1 inositol 1-phosphate synthase, Actinobacterial type. This enzyme, inositol 1-phosphate synthase as found in Actinobacteria, produces an essential precursor for several different products, including mycothiol, which is a glutathione analog, and phosphatidylinositol, which is a phospholipid.
Probab=100.00 E-value=4.3e-70 Score=552.22 Aligned_cols=213 Identities=24% Similarity=0.251 Sum_probs=190.6
Q ss_pred CChhHHHHHHHHhcCCCeecCCCCCCC-chhHHHHHHHhCCccccCCCCC--CcchhHHHHHHHHHhcCCceeEEEeeee
Q 011047 245 ISPSTLYAIACVLENIPFINGSPQNTF-VPGLIDLAIRRNCLIGGDDFKS--GQTKMKSVLVDFLVGAGIKPTSIVSYNH 321 (494)
Q Consensus 245 i~aS~~YA~AAl~aG~~fINgtP~~t~-ipal~elae~~gvpi~GdD~KS--GqT~lks~La~~l~~RGlkv~s~~s~Ni 321 (494)
-.|+++||+||+++||+||||+|+++. +|+|.++|+++|+||+|||+|| |||++|++|++||++||++|.+|||+||
T Consensus 136 ~~A~~~YA~AAl~aG~afVN~~P~~ia~~p~~a~~f~e~glPi~GDD~Ksq~GaTi~h~vLa~lf~~Rgl~v~~~yq~Ni 215 (351)
T TIGR03450 136 EEADKFYAQCAIDAGVAFVNALPVFIASDPEWAKKFTDAGVPIVGDDIKSQVGATITHRVLAKLFEDRGVRLDRTMQLNV 215 (351)
T ss_pred HHHHHHHHHHHHHcCCceEeccCccccCCHHHHHHHHHCCCCEecccccccCCCchHHHHHHHHHHHcCCceeeEEEEee
Confidence 359999999999999999999998654 8999999999999999999998 9999999999999999999999999999
Q ss_pred cCCccccCCCCcccchhhhhhhhhHHhhhhhcCCccCCCCCCCcceeeecccCCCCCceeEEEEEeeeecCCCeEEEEEE
Q 011047 322 LGNNDGMNLSAPQTFRSKEISKSNVVDDMVSSNGILYGPGEHPDHVVVIKYVPYVGDSKRAMDEYTSEIFMGGKNTIVLH 401 (494)
Q Consensus 322 lGN~Dg~nL~~p~~~~SKeiSKs~vv~dil~~~~~ly~~g~~~~h~v~I~YvP~lGD~K~A~d~i~~~gFlG~~~ti~i~ 401 (494)
|||+||+||++|+|++|||+||+++|++++.+... ..++.|++|++|||||||+|++++++++.+|+|+||+|+++
T Consensus 216 gGN~Df~nL~~~~r~~SK~iSKs~vV~s~l~~~~~----~~~~v~IgPsdYvp~lgD~K~~~i~ieG~~F~G~pm~le~~ 291 (351)
T TIGR03450 216 GGNMDFKNMLERDRLESKKISKTQAVTSNLPDRPL----KDKNVHIGPSDHVGWLDDRKWAYVRLEGRAFGDVPLNLEYK 291 (351)
T ss_pred cCcchhhhhCChhhhhhhhhhHHHHHHHHhccCCC----CCCcEEECCcCCCCcCCCcEEEEEEEEhhhcCCceEEEEEE
Confidence 99999999999999999999999999999853211 23445666669999999999555555555599999999999
Q ss_pred eeeccccchhhHHHhHHHHHHHHHHhhhhhcCCCcccccCCchhhhhhhccCCCCCCCCCccCcHHHHHHHHHHHH
Q 011047 402 NTCEDSLLAAPIVLDLVLLAELSTRIQLKAEGEGKFHSFHPVATILSYLTKAPLVPPGTPVVNALSKQRAMLENIL 477 (494)
Q Consensus 402 ~~c~DS~lAApLviDLirla~la~r~g~~~~~~~~~~~~g~V~s~lsy~fKsP~~~~g~~~~~~l~~Q~~~L~n~l 477 (494)
|+|+||+|||||+|||+||+++|+|+| ..|++.+++|||||+||+|. ...+.++++++|+
T Consensus 292 l~v~DSpnaAglviDlvR~~klA~drG----------~~G~v~~~ssf~fK~PP~q~------~d~~a~~~~~~fi 351 (351)
T TIGR03450 292 LEVWDSPNSAGVIIDAVRAAKIAKDRG----------IGGPVIPASSYLMKSPPEQL------PDDVARAQLEEFI 351 (351)
T ss_pred EEEecchhhHHHHHHHHHHHHHHHhcC----------CCCcccchhhhhhcCCcccC------ChHHHHHHHHhhC
Confidence 999999999999999999999999988 35679999999999999886 4568999999885
No 6
>PF01658 Inos-1-P_synth: Myo-inositol-1-phosphate synthase; InterPro: IPR013021 This is a region of myo-inositol-1-phosphate synthases that is related to the glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain. 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; PDB: 3CIN_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=100.00 E-value=1.6e-44 Score=317.89 Aligned_cols=112 Identities=50% Similarity=0.726 Sum_probs=104.5
Q ss_pred CcchhHHHHHHHHHhcCCceeEEEeeeecCCccccCCCCcccchhhhhhhhhHHhhhhhcCCccCCCCCCCcceeeeccc
Q 011047 294 GQTKMKSVLVDFLVGAGIKPTSIVSYNHLGNNDGMNLSAPQTFRSKEISKSNVVDDMVSSNGILYGPGEHPDHVVVIKYV 373 (494)
Q Consensus 294 GqT~lks~La~~l~~RGlkv~s~~s~NilGN~Dg~nL~~p~~~~SKeiSKs~vv~dil~~~~~ly~~g~~~~h~v~I~Yv 373 (494)
|||++|++|++||++||++|.+|||+|||||+||+||++|+|++||++||+++|++|+++++.||+ .+++|+++|+||
T Consensus 1 G~T~~k~~L~~~l~~Rgl~v~~~~q~NilGN~D~~nL~~~~r~~sK~~SKs~~v~~~l~~~~~ly~--~~~~~~~~i~Yv 78 (112)
T PF01658_consen 1 GQTILKSVLAPLLASRGLKVRSWYQYNILGNTDFLNLSDPERFKSKKISKSSVVDSILGSNPELYD--EDPDHIGPIDYV 78 (112)
T ss_dssp SHHHHHHHHHHHHHHTT-EEEEEEEEEEESSHHHHHHTSHHHHHHHHHHHHHHHHHHHSC-TTTSB-----EEEEEEEE-
T ss_pred CCccHHHHHHHHHHHcCCceEEEEEEeeccchHHHHhCCHhHHHhHHHHHHHHHHHHHhccccccC--CCCccccccccc
Confidence 899999999999999999999999999999999999999999999999999999999999999993 478999999999
Q ss_pred CCCCCceeEEEEEeeeecCCCeEEEEEEeeeccc
Q 011047 374 PYVGDSKRAMDEYTSEIFMGGKNTIVLHNTCEDS 407 (494)
Q Consensus 374 P~lGD~K~A~d~i~~~gFlG~~~ti~i~~~c~DS 407 (494)
||+||+|+|||+|++++|||+||+|+++|+|+||
T Consensus 79 p~lgD~K~a~~~ie~~~f~G~~~~i~~~~~~~DS 112 (112)
T PF01658_consen 79 PFLGDRKVAWDRIEGEGFLGAPMTIEVNLSVEDS 112 (112)
T ss_dssp GGGTTEEEEEEEEEEEEGGGEEEEEEEEEEEECH
T ss_pred CcCCCceEEEEEEEEeeeCCCcEEEEEEEEEeCC
Confidence 9999999999999999999999999999999998
No 7
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=81.32 E-value=16 Score=36.48 Aligned_cols=89 Identities=16% Similarity=0.140 Sum_probs=57.3
Q ss_pred HHHHHhcCCCeEEEEEccCCcccccccCCccccHHHH---HHhhhcC-CCCC---ChhHHHHHHHHhcCCCeecCCCCCC
Q 011047 198 REFKEKNKVDRVVVLWTANTERYSNVIVGLNDTVENL---LASLDKN-EAEI---SPSTLYAIACVLENIPFINGSPQNT 270 (494)
Q Consensus 198 r~Fk~~~~ld~vVVlw~AsTE~~~~~~~~~~~t~~~l---~~al~~n-~~~i---~aS~~YA~AAl~aG~~fINgtP~~t 270 (494)
++.-+ .|. .+|=|+..||-|...... ..+..+.+ .+.+.+. +..| +...--+.||+++|++.||-.-...
T Consensus 31 ~~~~~-~GA-diIDvG~~st~p~~~~~~-~~~E~~rl~~~v~~l~~~~~~piSIDT~~~~v~~aaL~~g~~iINdis~~~ 107 (258)
T cd00423 31 RRMVE-EGA-DIIDIGGESTRPGAEPVS-VEEELERVIPVLRALAGEPDVPISVDTFNAEVAEAALKAGADIINDVSGGR 107 (258)
T ss_pred HHHHH-CCC-CEEEECCCcCCCCCCcCC-HHHHHHHHHHHHHHHHhcCCCeEEEeCCcHHHHHHHHHhCCCEEEeCCCCC
Confidence 44433 564 466778889987653332 22233333 3444433 2222 5666788999999999999986422
Q ss_pred CchhHHHHHHHhCCccccC
Q 011047 271 FVPGLIDLAIRRNCLIGGD 289 (494)
Q Consensus 271 ~ipal~elae~~gvpi~Gd 289 (494)
..+.+.+++++.|+|+..-
T Consensus 108 ~~~~~~~l~~~~~~~vV~m 126 (258)
T cd00423 108 GDPEMAPLAAEYGAPVVLM 126 (258)
T ss_pred CChHHHHHHHHcCCCEEEE
Confidence 2388999999999987764
No 8
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=80.22 E-value=17 Score=36.64 Aligned_cols=96 Identities=11% Similarity=0.118 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEEccCCcccccccCCccccHHHHH---HhhhcC-CCCC---ChhHHHHHHHHhcCCCee
Q 011047 191 LQIIKDIREFKEKNKVDRVVVLWTANTERYSNVIVGLNDTVENLL---ASLDKN-EAEI---SPSTLYAIACVLENIPFI 263 (494)
Q Consensus 191 e~ir~DIr~Fk~~~~ld~vVVlw~AsTE~~~~~~~~~~~t~~~l~---~al~~n-~~~i---~aS~~YA~AAl~aG~~fI 263 (494)
+++++-.++..+ .|.|-+ =|...||-|..+... .....+.+. +.+++. +-.| +.+.--+.+|+++|+++|
T Consensus 23 ~~~~~~a~~~~~-~GA~iI-DIG~~st~p~~~~i~-~~~E~~rl~~~v~~~~~~~~~plsiDT~~~~vi~~al~~G~~iI 99 (257)
T TIGR01496 23 DKAVAHAERMLE-EGADII-DVGGESTRPGADRVS-PEEELNRVVPVIKALRDQPDVPISVDTYRAEVARAALEAGADII 99 (257)
T ss_pred HHHHHHHHHHHH-CCCCEE-EECCCCCCCCCCCCC-HHHHHHHHHHHHHHHHhcCCCeEEEeCCCHHHHHHHHHcCCCEE
Confidence 333333444443 676644 447778877543221 111222244 444433 3333 566778889999999999
Q ss_pred cCCCCCCCchhHHHHHHHhCCccccCC
Q 011047 264 NGSPQNTFVPGLIDLAIRRNCLIGGDD 290 (494)
Q Consensus 264 NgtP~~t~ipal~elae~~gvpi~GdD 290 (494)
|-.--.. .+.+.+++++.|+++..=.
T Consensus 100 Nsis~~~-~~~~~~l~~~~~~~vV~m~ 125 (257)
T TIGR01496 100 NDVSGGQ-DPAMLEVAAEYGVPLVLMH 125 (257)
T ss_pred EECCCCC-CchhHHHHHHcCCcEEEEe
Confidence 9875322 7889999999999988744
No 9
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=76.40 E-value=9.9 Score=40.97 Aligned_cols=117 Identities=15% Similarity=0.118 Sum_probs=70.4
Q ss_pred HhcCCCeEEEEEccCC-------cccccccCCccccHHHHHHhhhcCC-CCCChhHHHHHHHHhc--CCCeecC-CCCCC
Q 011047 202 EKNKVDRVVVLWTANT-------ERYSNVIVGLNDTVENLLASLDKNE-AEISPSTLYAIACVLE--NIPFING-SPQNT 270 (494)
Q Consensus 202 ~~~~ld~vVVlw~AsT-------E~~~~~~~~~~~t~~~l~~al~~n~-~~i~aS~~YA~AAl~a--G~~fINg-tP~~t 270 (494)
++.|++.+++-..++| .+|..... -..|.++++++-+..- -.++++..|+-..+++ |+||+.. .|- .
T Consensus 191 ~~~Gl~~~~l~d~s~~ld~~~~~~~~~~~~~-gg~t~eei~~~~~A~lniv~~~~~~~~a~~Lee~~giP~~~~~~p~-G 268 (432)
T TIGR01285 191 EAFGLKPIILPDLSRSLDGHLADDDFSPITQ-GGTTLEQIRQIGQSCCTLAIGESMRRAASLLADRCGVPYIVFPSLM-G 268 (432)
T ss_pred HHcCCceEEecccccccCCCCCCCccceeCC-CCCcHHHHHhhccCcEEEEEChhHHHHHHHHHHHHCCCeEecCCCc-C
Confidence 3688888665444432 23322222 3568999998755421 1167888887777775 9999987 452 2
Q ss_pred C---chhHHHHHHHhCCccc----------cC---C------CCC----CcchhHHHHHHHHHhcCCceeEEEeee
Q 011047 271 F---VPGLIDLAIRRNCLIG----------GD---D------FKS----GQTKMKSVLVDFLVGAGIKPTSIVSYN 320 (494)
Q Consensus 271 ~---ipal~elae~~gvpi~----------Gd---D------~KS----GqT~lks~La~~l~~RGlkv~s~~s~N 320 (494)
+ ..-+.++++-.|.++- =| | +|. |..-.--.|+.+|.+-|+.|...+..+
T Consensus 269 ~~~t~~~l~~l~~~~g~~~~~~~~~~r~~~~~~l~~~~~~l~Gkrvai~~~~~~~~~l~~~l~elGm~v~~~~~~~ 344 (432)
T TIGR01285 269 LEAVDAFLHVLMKISGRAVPERFERQRRQLQDAMLDTHFFLGGKKVAIAAEPDLLAAWATFFTSMGAQIVAAVTTT 344 (432)
T ss_pred hHHHHHHHHHHHHHHCCCccHHHHHHHHHHHHHHHHHHHhhCCCEEEEEcCHHHHHHHHHHHHHCCCEEEEEEeCC
Confidence 2 2335555554444320 00 0 122 333344789999999999999998865
No 10
>PRK06349 homoserine dehydrogenase; Provisional
Probab=75.52 E-value=17 Score=39.15 Aligned_cols=127 Identities=12% Similarity=0.094 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCC-eEEEEEccCCccccccc---CCccccHHHHHHhhhcCCCC--------CChhHHHHHH
Q 011047 187 KEQMLQIIKDIREFKEKNKVD-RVVVLWTANTERYSNVI---VGLNDTVENLLASLDKNEAE--------ISPSTLYAIA 254 (494)
Q Consensus 187 ~e~ve~ir~DIr~Fk~~~~ld-~vVVlw~AsTE~~~~~~---~~~~~t~~~l~~al~~n~~~--------i~aS~~YA~A 254 (494)
+..+++|.+....|+++.|.+ +++-|+..+-++..... ....++.+++.+ ..+-+ ..|..-|+.+
T Consensus 16 ~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~---d~~iDvVve~tg~~~~~~~~~~~ 92 (426)
T PRK06349 16 SGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVN---DPDIDIVVELMGGIEPARELILK 92 (426)
T ss_pred HHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhh---CCCCCEEEECCCCchHHHHHHHH
Confidence 457778877778888888876 45556555555433111 123445555543 22211 2456789999
Q ss_pred HHhcCCCeecCCCCCC--CchhHHHHHHHhCCccccCCCCCCcchhHHHHHHHHHhcCCceeEEEe
Q 011047 255 CVLENIPFINGSPQNT--FVPGLIDLAIRRNCLIGGDDFKSGQTKMKSVLVDFLVGAGIKPTSIVS 318 (494)
Q Consensus 255 Al~aG~~fINgtP~~t--~ipal~elae~~gvpi~GdD~KSGqT~lks~La~~l~~RGlkv~s~~s 318 (494)
|+++|.+.|=.-|... .-+.+.++|+++|+.+.=.=.-.|.++.-+.|-+.+ +|=++.++..
T Consensus 93 aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~l~fEasV~ggiPii~~l~~~l--~~~~I~~I~G 156 (426)
T PRK06349 93 ALEAGKHVVTANKALLAVHGAELFAAAEEKGVDLYFEAAVAGGIPIIKALREGL--AANRITRVMG 156 (426)
T ss_pred HHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCcEEEEEEeeccCchHHHHHhhc--ccCCeeEEEE
Confidence 9999999985556422 248899999999998761111128889889998886 4555666554
No 11
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=73.26 E-value=43 Score=33.85 Aligned_cols=92 Identities=13% Similarity=0.153 Sum_probs=58.7
Q ss_pred HHHHHHhcCCCeEEEEEccCCcccccccCCccccHHHH---HHhhhcC-CCCC---ChhHHHHHHHHhcCCCeecCCCCC
Q 011047 197 IREFKEKNKVDRVVVLWTANTERYSNVIVGLNDTVENL---LASLDKN-EAEI---SPSTLYAIACVLENIPFINGSPQN 269 (494)
Q Consensus 197 Ir~Fk~~~~ld~vVVlw~AsTE~~~~~~~~~~~t~~~l---~~al~~n-~~~i---~aS~~YA~AAl~aG~~fINgtP~~ 269 (494)
.+++.+ .|.| +|=|...||.|..+... .....+.+ .++|++. +..| +...--+++|+++|++.||-.-..
T Consensus 30 a~~~~~-~GAd-iIDIG~~st~p~~~~i~-~~~E~~rl~~~v~~i~~~~~~plSIDT~~~~v~e~al~~G~~iINdisg~ 106 (257)
T cd00739 30 AEKMIA-EGAD-IIDIGGESTRPGADPVS-VEEELERVIPVLEALRGELDVLISVDTFRAEVARAALEAGADIINDVSGG 106 (257)
T ss_pred HHHHHH-CCCC-EEEECCCcCCCCCCCCC-HHHHHHHHHHHHHHHHhcCCCcEEEeCCCHHHHHHHHHhCCCEEEeCCCC
Confidence 344443 5754 55567789988764332 22234443 3444443 2233 455566788999999999987643
Q ss_pred CCchhHHHHHHHhCCccccCCC
Q 011047 270 TFVPGLIDLAIRRNCLIGGDDF 291 (494)
Q Consensus 270 t~ipal~elae~~gvpi~GdD~ 291 (494)
...+.+.+++++.|+++..-..
T Consensus 107 ~~~~~~~~l~~~~~~~vV~m~~ 128 (257)
T cd00739 107 SDDPAMLEVAAEYGAPLVLMHM 128 (257)
T ss_pred CCChHHHHHHHHcCCCEEEECC
Confidence 3348899999999999888443
No 12
>PRK12301 bssS biofilm formation regulatory protein BssS; Reviewed
Probab=70.23 E-value=3.3 Score=35.74 Aligned_cols=15 Identities=47% Similarity=0.824 Sum_probs=13.5
Q ss_pred ecccCCCCCHHHHHH
Q 011047 124 GGWDISDMNLADAMA 138 (494)
Q Consensus 124 GGwDI~~~~l~ea~~ 138 (494)
=||||++.+-|+||+
T Consensus 14 vGWdistvd~YDAmm 28 (84)
T PRK12301 14 VGWDISTVDSYDALM 28 (84)
T ss_pred ccccccCcccHhhHH
Confidence 379999999999987
No 13
>PRK08374 homoserine dehydrogenase; Provisional
Probab=65.66 E-value=70 Score=33.46 Aligned_cols=130 Identities=18% Similarity=0.178 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCC-eEEEEEccCCccccc----ccC------------------C-ccccHHHHHHhhhcC-
Q 011047 187 KEQMLQIIKDIREFKEKNKVD-RVVVLWTANTERYSN----VIV------------------G-LNDTVENLLASLDKN- 241 (494)
Q Consensus 187 ~e~ve~ir~DIr~Fk~~~~ld-~vVVlw~AsTE~~~~----~~~------------------~-~~~t~~~l~~al~~n- 241 (494)
...+++|.+.-..|++++|.+ +|+-|-.++.-.|.+ +.. + ...+.+++.+..+.+
T Consensus 15 ~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~DV 94 (336)
T PRK08374 15 RAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFSPEEIVEEIDADI 94 (336)
T ss_pred HHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCCHHHHHhcCCCCE
Confidence 456777777777889999977 444343333222211 000 0 001344443322111
Q ss_pred ---CCCCChhHHHHHHHHhcCCCeecCC--CCCCCchhHHHHHHHhCCccccCCCCCCcchhHHHHHHHHHhcCCceeEE
Q 011047 242 ---EAEISPSTLYAIACVLENIPFINGS--PQNTFVPGLIDLAIRRNCLIGGDDFKSGQTKMKSVLVDFLVGAGIKPTSI 316 (494)
Q Consensus 242 ---~~~i~aS~~YA~AAl~aG~~fINgt--P~~t~ipal~elae~~gvpi~GdD~KSGqT~lks~La~~l~~RGlkv~s~ 316 (494)
-..-.+..-+...|+++|++.|=++ |-...-+.+.++|+++|+++.=.=--+|..++=+.|-+.+ +|=++.++
T Consensus 95 vVd~t~~~~a~~~~~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~~ea~v~~GiPii~~l~~~l--~g~~i~~i 172 (336)
T PRK08374 95 VVDVTNDKNAHEWHLEALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYLFEATVMAGTPIIGLLRENL--LGDTVKRI 172 (336)
T ss_pred EEECCCcHHHHHHHHHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEEEeccccccCCchHHHHhhc--cccceEEE
Confidence 0001234455567889999998333 3212357899999999999885444458899999998888 78888888
Q ss_pred Ee
Q 011047 317 VS 318 (494)
Q Consensus 317 ~s 318 (494)
..
T Consensus 173 ~G 174 (336)
T PRK08374 173 EA 174 (336)
T ss_pred EE
Confidence 76
No 14
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=64.78 E-value=4.7 Score=39.45 Aligned_cols=62 Identities=24% Similarity=0.248 Sum_probs=38.8
Q ss_pred HHHHHhcCCCeecCCCCCCCchhHHHHHHHhCCccccCCCCCCcchhHHHHHHHHHhcCCceeEEEeeeecC
Q 011047 252 AIACVLENIPFINGSPQNTFVPGLIDLAIRRNCLIGGDDFKSGQTKMKSVLVDFLVGAGIKPTSIVSYNHLG 323 (494)
Q Consensus 252 A~AAl~aG~~fINgtP~~t~ipal~elae~~gvpi~GdD~KSGqT~lks~La~~l~~RGlkv~s~~s~NilG 323 (494)
|.+|+++|+.|+ .||. +.|.+.+.|.++++|+.= |..--.. +-.-.+.|.++...|=-..+|
T Consensus 73 a~~a~~aGA~Fi-vSP~--~~~~v~~~~~~~~i~~iP-----G~~TptE--i~~A~~~G~~~vK~FPA~~~G 134 (196)
T PF01081_consen 73 AEAAIAAGAQFI-VSPG--FDPEVIEYAREYGIPYIP-----GVMTPTE--IMQALEAGADIVKLFPAGALG 134 (196)
T ss_dssp HHHHHHHT-SEE-EESS----HHHHHHHHHHTSEEEE-----EESSHHH--HHHHHHTT-SEEEETTTTTTT
T ss_pred HHHHHHcCCCEE-ECCC--CCHHHHHHHHHcCCcccC-----CcCCHHH--HHHHHHCCCCEEEEecchhcC
Confidence 677889999999 8994 899999999999998752 2211111 112336677777776554444
No 15
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=63.59 E-value=35 Score=33.19 Aligned_cols=131 Identities=18% Similarity=0.215 Sum_probs=79.8
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCeEEEEEccCCcccccccCCccccHHHHHH---hhhc--CCCCC---ChhHHHHHHH
Q 011047 184 GTKKEQMLQIIKDIREFKEKNKVDRVVVLWTANTERYSNVIVGLNDTVENLLA---SLDK--NEAEI---SPSTLYAIAC 255 (494)
Q Consensus 184 gt~~e~ve~ir~DIr~Fk~~~~ld~vVVlw~AsTE~~~~~~~~~~~t~~~l~~---al~~--n~~~i---~aS~~YA~AA 255 (494)
|.+....+...++++++.+ .|.| +|=|+..||=|...... .....+.+.. ++.+ .+..| +...-.+.+|
T Consensus 12 g~~~~~~~~a~~~a~~~~~-~GAd-iIDIg~~st~p~~~~v~-~~eE~~rl~~~l~~i~~~~~~~plSIDT~~~~v~~~a 88 (210)
T PF00809_consen 12 GGRKFSEDEAVKRAREQVE-AGAD-IIDIGAESTRPGATPVS-EEEEMERLVPVLQAIREENPDVPLSIDTFNPEVAEAA 88 (210)
T ss_dssp TTCHHHHHHHHHHHHHHHH-TT-S-EEEEESSTSSTTSSSSH-HHHHHHHHHHHHHHHHHHHTTSEEEEEESSHHHHHHH
T ss_pred cCcccCHHHHHHHHHHHHH-hcCC-EEEecccccCCCCCcCC-HHHHHHHHHHHHHHHhccCCCeEEEEECCCHHHHHHH
Confidence 4444444555556788877 6766 56678899977663322 2223333333 3332 12233 4556678889
Q ss_pred HhcCCCeecCCCCCCCchhHHHHHHHhCCccccCCCCC---C-------cchhHHHHHHHHHh-------cCCceeEEE
Q 011047 256 VLENIPFINGSPQNTFVPGLIDLAIRRNCLIGGDDFKS---G-------QTKMKSVLVDFLVG-------AGIKPTSIV 317 (494)
Q Consensus 256 l~aG~~fINgtP~~t~ipal~elae~~gvpi~GdD~KS---G-------qT~lks~La~~l~~-------RGlkv~s~~ 317 (494)
+++|...||=+=.....|.+.+++++.++++..=-... | ..-+=..+.++|.+ .|+....++
T Consensus 89 L~~g~~~ind~~~~~~~~~~~~l~a~~~~~vV~m~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~l~~~Gi~~~~Ii 167 (210)
T PF00809_consen 89 LKAGADIINDISGFEDDPEMLPLAAEYGAPVVLMHSDGNPKGMPETADYRLDIAEEIIEFLEERIEALEKAGIPRERII 167 (210)
T ss_dssp HHHTSSEEEETTTTSSSTTHHHHHHHHTSEEEEESESSETTTTTSSHHHSHSHHHHHHHHHHHHHHHHHHTT--GGGEE
T ss_pred HHcCcceEEecccccccchhhhhhhcCCCEEEEEecccccccccccchhhhhHHHHHHHHHHHHHHHHHHcCCCHHHEe
Confidence 99999999988864448999999999999887643331 1 11233455666666 588776665
No 16
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=62.31 E-value=8.1 Score=38.53 Aligned_cols=67 Identities=16% Similarity=0.279 Sum_probs=44.9
Q ss_pred CChhHHHHHHHHhcCCCeecCCCCCCCchhHHHHHHHhCCccccCCCCCCcchhHHHHHHHHHhcCCceeEEEeeeecC
Q 011047 245 ISPSTLYAIACVLENIPFINGSPQNTFVPGLIDLAIRRNCLIGGDDFKSGQTKMKSVLVDFLVGAGIKPTSIVSYNHLG 323 (494)
Q Consensus 245 i~aS~~YA~AAl~aG~~fINgtP~~t~ipal~elae~~gvpi~GdD~KSGqT~lks~La~~l~~RGlkv~s~~s~NilG 323 (494)
+++.++ .+|+++|+.|+ .|| .+.|.+.+.|.++|+|+.= |..--.- +-.-.+.|.+....|=-+.+|
T Consensus 79 l~~e~a--~~a~~aGA~Fi-VsP--~~~~~v~~~~~~~~i~~iP-----G~~TpsE--i~~A~~~Ga~~vKlFPA~~~G 145 (222)
T PRK07114 79 VDAATA--ALYIQLGANFI-VTP--LFNPDIAKVCNRRKVPYSP-----GCGSLSE--IGYAEELGCEIVKLFPGSVYG 145 (222)
T ss_pred cCHHHH--HHHHHcCCCEE-ECC--CCCHHHHHHHHHcCCCEeC-----CCCCHHH--HHHHHHCCCCEEEECcccccC
Confidence 355554 66889999999 899 4899999999999999753 2221111 122345677777777544333
No 17
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=62.14 E-value=8.2 Score=38.03 Aligned_cols=57 Identities=19% Similarity=0.191 Sum_probs=40.8
Q ss_pred HHHHHhcCCCeecCCCCCCCchhHHHHHHHhCCccccCCCCCCcchhHHHHHHHHHhcCCceeEEEe
Q 011047 252 AIACVLENIPFINGSPQNTFVPGLIDLAIRRNCLIGGDDFKSGQTKMKSVLVDFLVGAGIKPTSIVS 318 (494)
Q Consensus 252 A~AAl~aG~~fINgtP~~t~ipal~elae~~gvpi~GdD~KSGqT~lks~La~~l~~RGlkv~s~~s 318 (494)
|..|+++|+.|| .|| .+.|.+.+.|.++|+|+.= |..-. +-+... .+.|......|-
T Consensus 81 ~~~a~~aGA~Fi-vsP--~~~~~v~~~~~~~~i~~iP-----G~~T~-~E~~~A-~~~Gad~vklFP 137 (213)
T PRK06552 81 ARLAILAGAQFI-VSP--SFNRETAKICNLYQIPYLP-----GCMTV-TEIVTA-LEAGSEIVKLFP 137 (213)
T ss_pred HHHHHHcCCCEE-ECC--CCCHHHHHHHHHcCCCEEC-----CcCCH-HHHHHH-HHcCCCEEEECC
Confidence 478889999999 699 5899999999999999763 33222 222222 357888777643
No 18
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=62.12 E-value=8.4 Score=37.92 Aligned_cols=63 Identities=17% Similarity=0.106 Sum_probs=43.9
Q ss_pred HHHHHhcCCCeecCCCCCCCchhHHHHHHHhCCccccCCCCCCcchhHHHHHHHHHhcCCceeEEEeeeecCC
Q 011047 252 AIACVLENIPFINGSPQNTFVPGLIDLAIRRNCLIGGDDFKSGQTKMKSVLVDFLVGAGIKPTSIVSYNHLGN 324 (494)
Q Consensus 252 A~AAl~aG~~fINgtP~~t~ipal~elae~~gvpi~GdD~KSGqT~lks~La~~l~~RGlkv~s~~s~NilGN 324 (494)
|..|+++|+.|+ .|| .+.|.+.+.|+++++|+.= |..-..-+ -.-.+.|.++...|=-+.+|.
T Consensus 69 a~~ai~aGA~Fi-vSP--~~~~~vi~~a~~~~i~~iP-----G~~TptEi--~~A~~~Ga~~vK~FPa~~~GG 131 (201)
T PRK06015 69 FEDAAKAGSRFI-VSP--GTTQELLAAANDSDVPLLP-----GAATPSEV--MALREEGYTVLKFFPAEQAGG 131 (201)
T ss_pred HHHHHHcCCCEE-ECC--CCCHHHHHHHHHcCCCEeC-----CCCCHHHH--HHHHHCCCCEEEECCchhhCC
Confidence 578889999999 899 4899999999999998652 32221111 123457777777776555543
No 19
>PRK06270 homoserine dehydrogenase; Provisional
Probab=61.47 E-value=72 Score=33.30 Aligned_cols=69 Identities=13% Similarity=0.080 Sum_probs=49.9
Q ss_pred hHHHHHHHHhcCCCeecC--CCCCCCchhHHHHHHHhCCccccCCCCCCcchhHHHHHHHHHhcCCceeEEEe
Q 011047 248 STLYAIACVLENIPFING--SPQNTFVPGLIDLAIRRNCLIGGDDFKSGQTKMKSVLVDFLVGAGIKPTSIVS 318 (494)
Q Consensus 248 S~~YA~AAl~aG~~fINg--tP~~t~ipal~elae~~gvpi~GdD~KSGqT~lks~La~~l~~RGlkv~s~~s 318 (494)
+.-|+.+|++.|++.|=. -|-....+.+.++|+++|+.+.=.=.-.|..++-..|-+++. |=++.++..
T Consensus 107 a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~~~~ea~v~~glPii~~l~~~l~--g~~I~~I~G 177 (341)
T PRK06270 107 ALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVRFRYEATVGGAMPIINLAKETLA--GNDIKSIKG 177 (341)
T ss_pred HHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCEEEEeeeeeechhHHHHHHhhcc--cCceEEEEE
Confidence 367899999999999865 464334689999999999977621222378888888888754 566666554
No 20
>PRK13753 dihydropteroate synthase; Provisional
Probab=60.87 E-value=25 Score=36.42 Aligned_cols=106 Identities=12% Similarity=0.127 Sum_probs=61.5
Q ss_pred CCCCccCCHHHHHHHHHHHHHHHHHhcCCCeEEEEEccCCcccccccCCccccHH---HHHHhhhcCCCCCChhHH---H
Q 011047 178 ANNVIKGTKKEQMLQIIKDIREFKEKNKVDRVVVLWTANTERYSNVIVGLNDTVE---NLLASLDKNEAEISPSTL---Y 251 (494)
Q Consensus 178 a~nv~~gt~~e~ve~ir~DIr~Fk~~~~ld~vVVlw~AsTE~~~~~~~~~~~t~~---~l~~al~~n~~~i~aS~~---Y 251 (494)
+|..-.|.+.-..+.+.+-++++-+ .|.|- |-|=.-||.|..+... ....++ ...+++......||-.++ -
T Consensus 12 PDSFsDGg~~~~~d~a~~~a~~m~~-~GAdI-IDIGgeSTrPga~~vs-~eeE~~Rv~pvI~~l~~~~~~ISIDT~~~~v 88 (279)
T PRK13753 12 EDSFFDESRRLDPAGAVTAAIEMLR-VGSDV-VDVGPAASHPDARPVS-PADEIRRIAPLLDALSDQMHRVSIDSFQPET 88 (279)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHH-CCCcE-EEECCCCCCCCCCcCC-HHHHHHHHHHHHHHHHhCCCcEEEECCCHHH
Confidence 3444444333233444445566654 67653 4444559988764332 112333 333455543344544444 4
Q ss_pred HHHHHhcCCCeecCCCCCCCchhHHHHHHHhCCccc
Q 011047 252 AIACVLENIPFINGSPQNTFVPGLIDLAIRRNCLIG 287 (494)
Q Consensus 252 A~AAl~aG~~fINgtP~~t~ipal~elae~~gvpi~ 287 (494)
|.+|+++|+.+||=.-.. ..|.+.+.+.+.++|+.
T Consensus 89 a~~al~aGadiINDVsg~-~d~~~~~vva~~~~~vV 123 (279)
T PRK13753 89 QRYALKRGVGYLNDIQGF-PDPALYPDIAEADCRLV 123 (279)
T ss_pred HHHHHHcCCCEEEeCCCC-CchHHHHHHHHcCCCEE
Confidence 678899999999988542 37888888888877764
No 21
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=59.79 E-value=88 Score=32.65 Aligned_cols=140 Identities=16% Similarity=0.082 Sum_probs=71.1
Q ss_pred eeeecccC-CCCCHHHHHHHCCC---CChh-HHHHhHHHhhhcCCCCCCCChhhHhhhccccCCCCccCCHHHHHHHHHH
Q 011047 121 IVFGGWDI-SDMNLADAMARARV---FDID-LQKQLRPYMESMVPLPGIYDPDFIAANQGSRANNVIKGTKKEQMLQIIK 195 (494)
Q Consensus 121 lVfGGwDI-~~~~l~ea~~~a~V---l~~~-l~~~v~~~L~~i~p~p~v~~~~fia~nq~~ra~nv~~gt~~e~ve~ir~ 195 (494)
|+-++=|- ++..++.|+.++|- +... ..++++.+.+++|....+ ++..|...+..+++.+
T Consensus 37 iv~apM~~vt~~~ma~ava~~GglGvi~~~~~~~~~~~~i~~vk~~l~v---------------~~~~~~~~~~~~~~~~ 101 (325)
T cd00381 37 LVSAPMDTVTESEMAIAMARLGGIGVIHRNMSIEEQAEEVRKVKGRLLV---------------GAAVGTREDDKERAEA 101 (325)
T ss_pred EEecCCCcCCcHHHHHHHHHCCCEEEEeCCCCHHHHHHHHHHhccCceE---------------EEecCCChhHHHHHHH
Confidence 45555443 55667888888764 4433 345566666666522111 1111222223333332
Q ss_pred HHHHHHHhcCCCeEEEEEccCCcccccccCCccccHHHHHHhhhcCCCCC------ChhHHHHHHHHhcCCCeecC--C-
Q 011047 196 DIREFKEKNKVDRVVVLWTANTERYSNVIVGLNDTVENLLASLDKNEAEI------SPSTLYAIACVLENIPFING--S- 266 (494)
Q Consensus 196 DIr~Fk~~~~ld~vVVlw~AsTE~~~~~~~~~~~t~~~l~~al~~n~~~i------~aS~~YA~AAl~aG~~fINg--t- 266 (494)
- .+ .|+|- |+|+++.- ......++.+.+++..+++ -.+.--|..++++|+.||-. .
T Consensus 102 l----~e-agv~~-I~vd~~~G---------~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~vg~g~ 166 (325)
T cd00381 102 L----VE-AGVDV-IVIDSAHG---------HSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKVGIGP 166 (325)
T ss_pred H----Hh-cCCCE-EEEECCCC---------CcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhcCCCEEEECCCC
Confidence 2 22 47664 44555431 1112333444444433211 25556788899999999852 2
Q ss_pred --------------CCCCCchhHHHHHHHhCCccccCC
Q 011047 267 --------------PQNTFVPGLIDLAIRRNCLIGGDD 290 (494)
Q Consensus 267 --------------P~~t~ipal~elae~~gvpi~GdD 290 (494)
|+.+.++.+.+.+++.++|+..|-
T Consensus 167 G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVIA~G 204 (325)
T cd00381 167 GSICTTRIVTGVGVPQATAVADVAAAARDYGVPVIADG 204 (325)
T ss_pred CcCcccceeCCCCCCHHHHHHHHHHHHhhcCCcEEecC
Confidence 222224455566666789998664
No 22
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=59.33 E-value=9.7 Score=37.52 Aligned_cols=67 Identities=21% Similarity=0.208 Sum_probs=47.4
Q ss_pred ChhHHHHHHHHhcCCCeecCCCCCCCchhHHHHHHHhCCccccCCCCCCcchhHHHHHHHHHhcCCceeEEEeeeecCC
Q 011047 246 SPSTLYAIACVLENIPFINGSPQNTFVPGLIDLAIRRNCLIGGDDFKSGQTKMKSVLVDFLVGAGIKPTSIVSYNHLGN 324 (494)
Q Consensus 246 ~aS~~YA~AAl~aG~~fINgtP~~t~ipal~elae~~gvpi~GdD~KSGqT~lks~La~~l~~RGlkv~s~~s~NilGN 324 (494)
++.+ |.+|+++|+.|| .||. +.|.+.+.|.++|+|+.= .-.|. .- +-.-.+.|.++...|=-+.+|.
T Consensus 69 ~~~~--a~~a~~aGA~Fi-vsP~--~~~~v~~~~~~~~i~~iP----G~~Tp-tE--i~~A~~~Ga~~vKlFPA~~~GG 135 (204)
T TIGR01182 69 NPEQ--LRQAVDAGAQFI-VSPG--LTPELAKHAQDHGIPIIP----GVATP-SE--IMLALELGITALKLFPAEVSGG 135 (204)
T ss_pred CHHH--HHHHHHcCCCEE-ECCC--CCHHHHHHHHHcCCcEEC----CCCCH-HH--HHHHHHCCCCEEEECCchhcCC
Confidence 4444 778889999999 8994 899999999999999764 11222 11 1223457888888887665553
No 23
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=56.90 E-value=84 Score=33.78 Aligned_cols=121 Identities=16% Similarity=0.153 Sum_probs=67.8
Q ss_pred HHHHHHhcCCCeEEEEEcc------CCcccccccCCccccHHHHHHhhhcCC-CCCChhHHHHHHHHhc--CCCeecC-C
Q 011047 197 IREFKEKNKVDRVVVLWTA------NTERYSNVIVGLNDTVENLLASLDKNE-AEISPSTLYAIACVLE--NIPFING-S 266 (494)
Q Consensus 197 Ir~Fk~~~~ld~vVVlw~A------sTE~~~~~~~~~~~t~~~l~~al~~n~-~~i~aS~~YA~AAl~a--G~~fINg-t 266 (494)
|++.-++.|++.+++-..+ -..+|.... .-..|.++++++-...- =.++++..++-..+++ |.||+.. +
T Consensus 176 ik~lL~~~Gl~v~~l~d~s~~~d~~~~~~~~~~~-~ggt~leei~~~~~A~lniv~~~~~~~~a~~Lee~~GiP~~~~~~ 254 (417)
T cd01966 176 LKDIIEAFGLEPIILPDLSGSLDGHLADDWSPTT-TGGTTLEDIRQMGRSAATLAIGESMRKAAEALEERTGVPYYVFPS 254 (417)
T ss_pred HHHHHHHcCCceEEecCcccccCCCCCCCccccC-CCCCcHHHHHhhccCeEEEEECHHHHHHHHHHHHHHCCCeeecCC
Confidence 3455566898886653333 223343222 23468899988754421 1156666676666764 9999987 4
Q ss_pred CCCCC---chhHHHHHHHhCCcc----------------------ccCCCCC-CcchhHHHHHHHHHhcCCceeEEEee
Q 011047 267 PQNTF---VPGLIDLAIRRNCLI----------------------GGDDFKS-GQTKMKSVLVDFLVGAGIKPTSIVSY 319 (494)
Q Consensus 267 P~~t~---ipal~elae~~gvpi----------------------~GdD~KS-GqT~lks~La~~l~~RGlkv~s~~s~ 319 (494)
|- .+ ..-+.++++-.|.++ .|+-+-- |..-.--.|++||.+-|+.|...+..
T Consensus 255 p~-G~~~T~~~L~~la~~~g~~~~~~i~~er~~~~~~~~d~~~~l~gkrvai~~~~~~~~~l~~~L~ElG~~~~~~~~~ 332 (417)
T cd01966 255 LT-GLEAVDALIATLAKLSGRPVPEKIRRQRAQLQDAMLDGHFYLGGKRVAIALEPDLLAALSSFLAEMGAEIVAAVAT 332 (417)
T ss_pred Cc-chHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHhCCcEEEEEeCHHHHHHHHHHHHHCCCEEEEEEEC
Confidence 52 11 123344444333332 1221110 33334466899999999999887774
No 24
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=55.46 E-value=13 Score=40.10 Aligned_cols=67 Identities=21% Similarity=0.321 Sum_probs=52.7
Q ss_pred CCeecCCCCCCC--------chhHHHHHHHhCCccccCCCCC-----CcchhH-HHHHHHHHhcCCceeE-EEeeeecCC
Q 011047 260 IPFINGSPQNTF--------VPGLIDLAIRRNCLIGGDDFKS-----GQTKMK-SVLVDFLVGAGIKPTS-IVSYNHLGN 324 (494)
Q Consensus 260 ~~fINgtP~~t~--------ipal~elae~~gvpi~GdD~KS-----GqT~lk-s~La~~l~~RGlkv~s-~~s~NilGN 324 (494)
-.||=|.|.|+. +-.+.|+|+++||.+.-|++-. |++-+- ..|.+-++++-+...+ +=.+|+.|=
T Consensus 160 kl~iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~~~a~~~it~~saSKtFNlaGL 239 (388)
T COG1168 160 KLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSERFADNSITLTSASKTFNLAGL 239 (388)
T ss_pred cEEEEeCCCCCCCccccHHHHHHHHHHHHHcCCEEEeecccccccccCCCccchhhcChhhhcceEEEeeccccccchhh
Confidence 479999999842 2678999999999999999766 754444 4488999999999888 667787774
Q ss_pred cc
Q 011047 325 ND 326 (494)
Q Consensus 325 ~D 326 (494)
.=
T Consensus 240 ~~ 241 (388)
T COG1168 240 KC 241 (388)
T ss_pred hh
Confidence 43
No 25
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=54.79 E-value=64 Score=34.11 Aligned_cols=37 Identities=24% Similarity=0.341 Sum_probs=28.0
Q ss_pred CcccccccccCCCCCCCCCeeeecccCCCCCHHHHHH
Q 011047 102 GEEIYAPFKSILPMVNPDDIVFGGWDISDMNLADAMA 138 (494)
Q Consensus 102 ~~~~~~p~~~~lPl~~~~dlVfGGwDI~~~~l~ea~~ 138 (494)
|+.+++-|+-=-+++||.=+.+.=||+-+....+++.
T Consensus 31 Ge~vlpf~r~e~~~~n~p~ia~~v~D~~~~~~~~~i~ 67 (319)
T PRK04452 31 GETALPFYHFEGPMPNPPVIAMEVFDMPPEDWPEAVK 67 (319)
T ss_pred CcccccccccCCCCCCCCeEEEEEecCCCcccHHHHH
Confidence 5577655554489999999999999998877655444
No 26
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=54.71 E-value=72 Score=34.30 Aligned_cols=118 Identities=15% Similarity=0.115 Sum_probs=66.7
Q ss_pred HHHHHHhcCCCeEEEE------EccCCcccccccCCccccHHHHHHhhhcCCCC--CCh---hHHHHHHHHhc--CCCee
Q 011047 197 IREFKEKNKVDRVVVL------WTANTERYSNVIVGLNDTVENLLASLDKNEAE--ISP---STLYAIACVLE--NIPFI 263 (494)
Q Consensus 197 Ir~Fk~~~~ld~vVVl------w~AsTE~~~~~~~~~~~t~~~l~~al~~n~~~--i~a---S~~YA~AAl~a--G~~fI 263 (494)
|+++-++.|++.+++. ...-|+.|.... .-..|.++++++-+.. -. +.+ +..++-..+++ |.||+
T Consensus 173 i~~lL~~~Gl~~~~~~d~s~~~~~~~~~~~~~~~-~~g~~~~~i~~~~~A~-lniv~~~~~~~g~~~A~~L~e~~giP~~ 250 (429)
T cd03466 173 IKEILREFGIEYILLPDTSETLDGPFWGEYHRLP-SGGTPISEIKGMGGAK-ATIELGMFVDHGLSAGSYLEEEFGIPNY 250 (429)
T ss_pred HHHHHHHcCCCeEEecCccccccCCCCCCcceeC-CCCCCHHHHHhhccCc-EEEEEccCccchHHHHHHHHHHHCCCee
Confidence 4566667888876633 334455555333 3566999999876442 11 243 66666666664 99998
Q ss_pred cC-CCCCCC---chhHHHHHHHhCCcccc--------------C-----CCCC----CcchhHHHHHHHHHhcCCceeEE
Q 011047 264 NG-SPQNTF---VPGLIDLAIRRNCLIGG--------------D-----DFKS----GQTKMKSVLVDFLVGAGIKPTSI 316 (494)
Q Consensus 264 Ng-tP~~t~---ipal~elae~~gvpi~G--------------d-----D~KS----GqT~lks~La~~l~~RGlkv~s~ 316 (494)
.. .|- .+ ..-+.++++-.|.++-- | -.|. |..-.=-.|+.+|.+.|++|...
T Consensus 251 ~~~~P~-G~~~t~~~l~~l~~~~g~~~~~~i~~~~~~~~~~~~d~~~~l~gkrv~v~g~~~~~~~l~~~L~elG~~~~~v 329 (429)
T cd03466 251 RLPLPI-GLRATDEFMSLLSKLTGKPIPEKYTRERGRLLDAMIDAHKYNFGRKAAIYGEPDFVVAITRFVLENGMVPVLI 329 (429)
T ss_pred ecCCCc-ChHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEcCHHHHHHHHHHHHHCCCEEEEE
Confidence 75 442 11 12334444433433210 0 0111 44445567899999999999554
Q ss_pred E
Q 011047 317 V 317 (494)
Q Consensus 317 ~ 317 (494)
.
T Consensus 330 ~ 330 (429)
T cd03466 330 A 330 (429)
T ss_pred E
Confidence 4
No 27
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=53.48 E-value=67 Score=33.24 Aligned_cols=109 Identities=9% Similarity=0.132 Sum_probs=64.2
Q ss_pred ccCCCCccCCHHHHHHHHHHHHHHHHHhcCCCeEEEEEccCCcccccccCCccccHHHHH---HhhhcC-CCCC---Chh
Q 011047 176 SRANNVIKGTKKEQMLQIIKDIREFKEKNKVDRVVVLWTANTERYSNVIVGLNDTVENLL---ASLDKN-EAEI---SPS 248 (494)
Q Consensus 176 ~ra~nv~~gt~~e~ve~ir~DIr~Fk~~~~ld~vVVlw~AsTE~~~~~~~~~~~t~~~l~---~al~~n-~~~i---~aS 248 (494)
.++|..-.|.+....+++.+-++++-+ .|.| +|=|..-||-|..+... .....+.+. ++|+.. +..| +-.
T Consensus 23 vTpDSFsdgg~~~~~~~a~~~a~~~~~-~GAd-IIDIGgeSTrPg~~~v~-~eeE~~Rv~pvI~~l~~~~~~~ISIDT~~ 99 (282)
T PRK11613 23 VTPDSFSDGGTHNSLIDAVKHANLMIN-AGAT-IIDVGGESTRPGAAEVS-VEEELDRVIPVVEAIAQRFEVWISVDTSK 99 (282)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHH-CCCc-EEEECCCCCCCCCCCCC-HHHHHHHHHHHHHHHHhcCCCeEEEECCC
Confidence 344444445444445555555566665 6755 55567779988764332 111211222 344432 2223 334
Q ss_pred HHHHHHHHhcCCCeecCCCCCCCchhHHHHHHHhCCcccc
Q 011047 249 TLYAIACVLENIPFINGSPQNTFVPGLIDLAIRRNCLIGG 288 (494)
Q Consensus 249 ~~YA~AAl~aG~~fINgtP~~t~ipal~elae~~gvpi~G 288 (494)
.--|.+|+++|+..||=.-.. ..|.+.+.+.+.|+|+.-
T Consensus 100 ~~va~~AL~~GadiINDI~g~-~d~~~~~~~a~~~~~vVl 138 (282)
T PRK11613 100 PEVIRESAKAGAHIINDIRSL-SEPGALEAAAETGLPVCL 138 (282)
T ss_pred HHHHHHHHHcCCCEEEECCCC-CCHHHHHHHHHcCCCEEE
Confidence 456789999999999988542 267878888888887764
No 28
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=51.66 E-value=63 Score=38.49 Aligned_cols=69 Identities=28% Similarity=0.161 Sum_probs=43.8
Q ss_pred HHHHHhcCCCeEEEEEccC------CcccccccCCccccHHHHHHhhhcCC-CCCChhHHHHHHHHhc--CCCeecC-CC
Q 011047 198 REFKEKNKVDRVVVLWTAN------TERYSNVIVGLNDTVENLLASLDKNE-AEISPSTLYAIACVLE--NIPFING-SP 267 (494)
Q Consensus 198 r~Fk~~~~ld~vVVlw~As------TE~~~~~~~~~~~t~~~l~~al~~n~-~~i~aS~~YA~AAl~a--G~~fINg-tP 267 (494)
++.-++.|++.++|...++ ++.|.... .-..|.++++++-+..- --++++..++--.+++ |+||+.+ .|
T Consensus 664 k~lL~~~Gl~v~~vpd~s~~ldg~~~~~~~~~~-~ggt~~eei~~~~~A~~niv~~~~~~~~A~~Leek~GiP~~~~~~p 742 (917)
T PRK14477 664 KEIVEAFGLDPVVVPDISNALDGHIDETVSPLS-TGGTTVEDIRAAGRSAATLAVGDSLARAAEKLQERFGIPAYGFTSL 742 (917)
T ss_pred HHHHHHcCCceEEecCccccccCCCCCCccccC-CCCCcHHHHHHhhhCcEEEEEcHhHHHHHHHHHHHHCCCeeecCCC
Confidence 4445668998888776664 34444333 23568999998755421 1257777776666764 9999985 44
No 29
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=50.88 E-value=17 Score=35.92 Aligned_cols=59 Identities=19% Similarity=0.191 Sum_probs=43.4
Q ss_pred HHHHHHhcCCCeecCCCCCCCchhHHHHHHHhCCccc-cCCCCCCcchhHHHHHHHHHhcCCceeEEEeee
Q 011047 251 YAIACVLENIPFINGSPQNTFVPGLIDLAIRRNCLIG-GDDFKSGQTKMKSVLVDFLVGAGIKPTSIVSYN 320 (494)
Q Consensus 251 YA~AAl~aG~~fINgtP~~t~ipal~elae~~gvpi~-GdD~KSGqT~lks~La~~l~~RGlkv~s~~s~N 320 (494)
=|..|+++|+.|+ .+|. +.|.+.+.|.+.++|+. |-- |. |- +....+.|..+..+|=-+
T Consensus 79 ~a~~a~~aGA~Fi-vsP~--~~~~vi~~a~~~~i~~iPG~~-----Tp--tE-i~~a~~~Ga~~vKlFPa~ 138 (212)
T PRK05718 79 QLAQAIEAGAQFI-VSPG--LTPPLLKAAQEGPIPLIPGVS-----TP--SE-LMLGMELGLRTFKFFPAE 138 (212)
T ss_pred HHHHHHHcCCCEE-ECCC--CCHHHHHHHHHcCCCEeCCCC-----CH--HH-HHHHHHCCCCEEEEccch
Confidence 3788889999999 8894 88899999999999987 632 22 11 333556777777775443
No 30
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=49.55 E-value=18 Score=36.21 Aligned_cols=70 Identities=16% Similarity=0.167 Sum_probs=50.4
Q ss_pred CChhHHHHHHHHhcCCCeecCCCCCCCchhHHHHHHHhCCccccCCCCCCcchhHHHHHHHHHhcCCceeEEEeeeecCC
Q 011047 245 ISPSTLYAIACVLENIPFINGSPQNTFVPGLIDLAIRRNCLIGGDDFKSGQTKMKSVLVDFLVGAGIKPTSIVSYNHLGN 324 (494)
Q Consensus 245 i~aS~~YA~AAl~aG~~fINgtP~~t~ipal~elae~~gvpi~GdD~KSGqT~lks~La~~l~~RGlkv~s~~s~NilGN 324 (494)
++|.++ .+|+.+|+-|| .||. +.|.+.+.|.++++|+.= | .+.-.=+-...+.|.+....|--+..|.
T Consensus 73 L~~~q~--~~a~~aGa~fi-VsP~--~~~ev~~~a~~~~ip~~P-----G--~~TptEi~~Ale~G~~~lK~FPa~~~Gg 140 (211)
T COG0800 73 LNPEQA--RQAIAAGAQFI-VSPG--LNPEVAKAANRYGIPYIP-----G--VATPTEIMAALELGASALKFFPAEVVGG 140 (211)
T ss_pred cCHHHH--HHHHHcCCCEE-ECCC--CCHHHHHHHHhCCCcccC-----C--CCCHHHHHHHHHcChhheeecCccccCc
Confidence 455554 55678899999 9995 899999999999999752 2 1122223344578888888888888876
Q ss_pred cc
Q 011047 325 ND 326 (494)
Q Consensus 325 ~D 326 (494)
-+
T Consensus 141 ~~ 142 (211)
T COG0800 141 PA 142 (211)
T ss_pred HH
Confidence 43
No 31
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=48.76 E-value=62 Score=36.13 Aligned_cols=111 Identities=10% Similarity=-0.055 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEEccCCcccccccCCccccHHHHHHhhhcC-CCCC---ChhHHHHHHHHhcCCCeecCC
Q 011047 191 LQIIKDIREFKEKNKVDRVVVLWTANTERYSNVIVGLNDTVENLLASLDKN-EAEI---SPSTLYAIACVLENIPFINGS 266 (494)
Q Consensus 191 e~ir~DIr~Fk~~~~ld~vVVlw~AsTE~~~~~~~~~~~t~~~l~~al~~n-~~~i---~aS~~YA~AAl~aG~~fINgt 266 (494)
+.|.+-.+++.+ .|.| +|-|++.||++..+ ....+.+++++. +..| +.+.--+++|+++|+++||-.
T Consensus 165 ~~i~~~A~~~~~-~GAD-IIDIG~~st~p~~~-------~v~~~V~~l~~~~~~pISIDT~~~~v~eaAL~aGAdiINsV 235 (499)
T TIGR00284 165 DGIEGLAARMER-DGAD-MVALGTGSFDDDPD-------VVKEKVKTALDALDSPVIADTPTLDELYEALKAGASGVIMP 235 (499)
T ss_pred HHHHHHHHHHHH-CCCC-EEEECCCcCCCcHH-------HHHHHHHHHHhhCCCcEEEeCCCHHHHHHHHHcCCCEEEEC
Confidence 666666777765 6755 56678989976432 233344444443 2233 677788999999999999955
Q ss_pred CCCCCchhHHHHHHHhCCccccCCCCC-CcchhHHHHHHHHHhcCC
Q 011047 267 PQNTFVPGLIDLAIRRNCLIGGDDFKS-GQTKMKSVLVDFLVGAGI 311 (494)
Q Consensus 267 P~~t~ipal~elae~~gvpi~GdD~KS-GqT~lks~La~~l~~RGl 311 (494)
-. ...+.+.+++.+.|+++..=-... .....=.-+++.+..+|+
T Consensus 236 s~-~~~d~~~~l~a~~g~~vVlm~~~~~~~~~~l~~~ie~a~~~Gi 280 (499)
T TIGR00284 236 DV-ENAVELASEKKLPEDAFVVVPGNQPTNYEELAKAVKKLRTSGY 280 (499)
T ss_pred Cc-cchhHHHHHHHHcCCeEEEEcCCCCchHHHHHHHHHHHHHCCC
Confidence 32 235678888888888877632110 110122234566777777
No 32
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=46.77 E-value=94 Score=32.62 Aligned_cols=84 Identities=11% Similarity=0.117 Sum_probs=59.2
Q ss_pred CccccHHHHHHhhhcC-C-CCCChhHHHHHHHHhcCCCeecCCCCCCCchhHHHHHHHhCCccccCCCCC-Ccc-hhHHH
Q 011047 226 GLNDTVENLLASLDKN-E-AEISPSTLYAIACVLENIPFINGSPQNTFVPGLIDLAIRRNCLIGGDDFKS-GQT-KMKSV 301 (494)
Q Consensus 226 ~~~~t~~~l~~al~~n-~-~~i~aS~~YA~AAl~aG~~fINgtP~~t~ipal~elae~~gvpi~GdD~KS-GqT-~lks~ 301 (494)
|.|-+...+.++|.-. | +-++|-.+--.+ ...-.|+=|||. |..++.+..|+++.|++.-= |.. .|=+-
T Consensus 102 P~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~--~~~~~~~PcTp~-----aii~lL~~~~i~l~Gk~V~vIG~s~ivG~P 174 (301)
T PRK14194 102 PAHIDEARVLQAINPLKDVDGFHSENVGGLS--QGRDVLTPCTPS-----GCLRLLEDTCGDLTGKHAVVIGRSNIVGKP 174 (301)
T ss_pred CCCCCHHHHHhccCchhccCccChhhhhHHh--cCCCCCCCCcHH-----HHHHHHHHhCCCCCCCEEEEECCCCccHHH
Confidence 3466777777777642 1 224444332221 112346666665 89999999999999988644 886 89999
Q ss_pred HHHHHHhcCCceeEE
Q 011047 302 LVDFLVGAGIKPTSI 316 (494)
Q Consensus 302 La~~l~~RGlkv~s~ 316 (494)
+|.+|..+|..|..|
T Consensus 175 mA~~L~~~gatVtv~ 189 (301)
T PRK14194 175 MAALLLQAHCSVTVV 189 (301)
T ss_pred HHHHHHHCCCEEEEE
Confidence 999999999999988
No 33
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=45.32 E-value=1.4e+02 Score=32.23 Aligned_cols=198 Identities=21% Similarity=0.206 Sum_probs=0.0
Q ss_pred CCeeeecccCCCCCHHHHHHH-------------CCCCChhHHHHhHHHhhhc-----CCCCCCCCh-------------
Q 011047 119 DDIVFGGWDISDMNLADAMAR-------------ARVFDIDLQKQLRPYMESM-----VPLPGIYDP------------- 167 (494)
Q Consensus 119 ~dlVfGGwDI~~~~l~ea~~~-------------a~Vl~~~l~~~v~~~L~~i-----~p~p~v~~~------------- 167 (494)
.|+||||.|--...+.++..+ ..++-.|+...+++.=++. .|.-.|--|
T Consensus 63 ~d~V~Gg~~~L~~ai~~~~~~~~p~~I~v~ttC~~~iiGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~gs~~~G~~~a 142 (435)
T cd01974 63 DAAVFGGQNNLIDGLKNAYAVYKPDMIAVSTTCMAEVIGDDLNAFIKNAKNKGSIPADFPVPFANTPSFVGSHITGYDNM 142 (435)
T ss_pred CceEECcHHHHHHHHHHHHHhcCCCEEEEeCCchHhhhhccHHHHHHHHHHhccCCCCCeEEEecCCCCccCHHHHHHHH
Q ss_pred ------hhHhhh---ccccCCCCccC--CHHHHHHHHHHHHHHHHHhcCCCeEEEEEccCCccccc-----ccCCccccH
Q 011047 168 ------DFIAAN---QGSRANNVIKG--TKKEQMLQIIKDIREFKEKNKVDRVVVLWTANTERYSN-----VIVGLNDTV 231 (494)
Q Consensus 168 ------~fia~n---q~~ra~nv~~g--t~~e~ve~ir~DIr~Fk~~~~ld~vVVlw~AsTE~~~~-----~~~~~~~t~ 231 (494)
.++... ...+.-|++.| +..+-++.|+ +-+++ .|++.+++..++++---.- ..+ ...|.
T Consensus 143 ~~al~~~l~~~~~~~~~~~~VNli~~~~~~~d~~~el~---~lL~~-~Gl~~~~~~d~s~~~d~~~~~~~~~~~-gg~~~ 217 (435)
T cd01974 143 VKGILTHLTEGSGGAGKNGKLNIIPGFDTYAGNMREIK---RLLEL-MGVDYTILPDTSDVLDTPADGEYRMYP-GGTTL 217 (435)
T ss_pred HHHHHHHHhcccCCCCCCCeEEEECCCCCCcchHHHHH---HHHHH-cCCCEEEecccccccCCCCCCCccccC-CCCCH
Q ss_pred HHHHHhhhcCCCC-CCh-hHHHHHHHHhc--CCCeecCC-CCCCC--chhHHHHHHHhCCccccC---------------
Q 011047 232 ENLLASLDKNEAE-ISP-STLYAIACVLE--NIPFINGS-PQNTF--VPGLIDLAIRRNCLIGGD--------------- 289 (494)
Q Consensus 232 ~~l~~al~~n~~~-i~a-S~~YA~AAl~a--G~~fINgt-P~~t~--ipal~elae~~gvpi~Gd--------------- 289 (494)
++++++-+..-.- +.+ +..+|-..+++ |+||+.+. |-..- ..-+.++++-.|.++--.
T Consensus 218 ~~i~~~~~A~~niv~~~~~~~~~a~~Le~~~giP~~~~~~p~G~~~t~~~l~~l~~~~g~~~~~~i~~er~~~~~~~~~~ 297 (435)
T cd01974 218 EELKDAGNAKATLALQEYATEKTAKFLEKKCKVPVETLNMPIGVAATDEFLMALSELTGKPIPEELEEERGRLVDAMTDS 297 (435)
T ss_pred HHHHhhccCcEEEEECccccHHHHHHHHHHhCCCeeecCCCcChHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q ss_pred ----CCCC----CcchhHHHHHHHHHhcCCceeEEEeeee
Q 011047 290 ----DFKS----GQTKMKSVLVDFLVGAGIKPTSIVSYNH 321 (494)
Q Consensus 290 ----D~KS----GqT~lks~La~~l~~RGlkv~s~~s~Ni 321 (494)
..|+ |..-.--.|+++|.+-|+.|......+.
T Consensus 298 ~~~l~gkrv~i~g~~~~~~~la~~L~elGm~v~~~~~~~~ 337 (435)
T cd01974 298 HQYLHGKKFALYGDPDFLIGLTSFLLELGMEPVHVLTGNG 337 (435)
T ss_pred HHhcCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEEeCCC
No 34
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=44.38 E-value=86 Score=34.22 Aligned_cols=121 Identities=16% Similarity=0.163 Sum_probs=69.2
Q ss_pred HHHHHhcCCCeEEEEEccC------CcccccccCCccccHHHHHHhhhcCCC-CCChhHHHHHHHHhc--CCCeecC-CC
Q 011047 198 REFKEKNKVDRVVVLWTAN------TERYSNVIVGLNDTVENLLASLDKNEA-EISPSTLYAIACVLE--NIPFING-SP 267 (494)
Q Consensus 198 r~Fk~~~~ld~vVVlw~As------TE~~~~~~~~~~~t~~~l~~al~~n~~-~i~aS~~YA~AAl~a--G~~fINg-tP 267 (494)
++.-+..|++.+++-..+. +++|..... -..|.++++++-+..-. -++++..++-..+++ |+||+.+ .|
T Consensus 188 k~lL~~~Gl~v~~lpd~s~~ld~~l~~~~~~~~~-gg~t~eei~~~~~A~lniv~~~~~~~~a~~Lee~~GiP~~~~~~p 266 (455)
T PRK14476 188 REIIEAFGLEPIILPDLSGSLDGHLPDDWTPTTL-GGTTLEEIRELGRSAATIAIGESMRKAAEALEARTGVPYLVFPSL 266 (455)
T ss_pred HHHHHHcCCceEEecCccccccCCCCCcccccCC-CCCCHHHHHhhccCcEEEEecHHHHHHHHHHHHHhCCCeEecCCC
Confidence 3444567888866544432 233432222 35689999987544211 146666676666764 9999987 44
Q ss_pred CCCC---chhHHHHHHHhCCcc----------------------ccCCCCC-CcchhHHHHHHHHHhcCCceeEEEeee
Q 011047 268 QNTF---VPGLIDLAIRRNCLI----------------------GGDDFKS-GQTKMKSVLVDFLVGAGIKPTSIVSYN 320 (494)
Q Consensus 268 ~~t~---ipal~elae~~gvpi----------------------~GdD~KS-GqT~lks~La~~l~~RGlkv~s~~s~N 320 (494)
- .+ ..-+.++++-.|.++ .|.-+-= |.--.--.|+++|.+-|+.|...+..+
T Consensus 267 ~-G~~~t~~~l~~l~~~~g~~~~~~i~~er~~~~~~~~d~~~~l~gkrvai~~~~~~~~~la~~L~elG~~v~~~~~~~ 344 (455)
T PRK14476 267 T-GLEAVDRFIATLAQISGRPVPAKYRRQRAQLQDAMLDGHFYFGGKRVAIAAEPDLLLALGSFLAEMGAEIVAAVTTT 344 (455)
T ss_pred c-ChHHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeCHHHHHHHHHHHHHCCCEEEEEEeCC
Confidence 2 22 233444444444332 1211100 222344568999999999999988865
No 35
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=44.10 E-value=1e+02 Score=32.88 Aligned_cols=18 Identities=28% Similarity=0.564 Sum_probs=12.0
Q ss_pred CCCCeeeecccCCCCCHHHHHH
Q 011047 117 NPDDIVFGGWDISDMNLADAMA 138 (494)
Q Consensus 117 ~~~dlVfGGwDI~~~~l~ea~~ 138 (494)
+-.|+||||+| +|.+++.
T Consensus 63 ~E~d~VfGg~~----~L~~aI~ 80 (415)
T cd01977 63 KESHVVFGGEK----KLKKNII 80 (415)
T ss_pred CccceeeccHH----HHHHHHH
Confidence 35799999974 5555443
No 36
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=42.39 E-value=3.7e+02 Score=27.90 Aligned_cols=44 Identities=18% Similarity=0.150 Sum_probs=29.8
Q ss_pred CCCCCCChhhHhhhccccCCCCccCCHHHHHHHHHHHHHHHHHhc
Q 011047 160 PLPGIYDPDFIAANQGSRANNVIKGTKKEQMLQIIKDIREFKEKN 204 (494)
Q Consensus 160 p~p~v~~~~fia~nq~~ra~nv~~gt~~e~ve~ir~DIr~Fk~~~ 204 (494)
||..+.+|+++++-.+.-+-.++.+ .....|+++++|+.+|+..
T Consensus 18 pM~~~s~~~la~avs~aGglG~l~~-~~~~~~~l~~~i~~~~~~t 61 (307)
T TIGR03151 18 GMAWVATGSLAAAVSNAGGLGIIGA-GNAPPDVVRKEIRKVKELT 61 (307)
T ss_pred CCCCCCCHHHHHHHHhCCCcceecc-ccCCHHHHHHHHHHHHHhc
Confidence 6777778888877765555544442 1123688999999999754
No 37
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=42.09 E-value=60 Score=34.87 Aligned_cols=125 Identities=16% Similarity=0.101 Sum_probs=63.2
Q ss_pred CCCCCeeeecccCCCCCHHHHHHHCCCCChhHHHHhHHHhhhcCCCCCCCChhhHhhhccccCCCCccCCHHHHHHHHHH
Q 011047 116 VNPDDIVFGGWDISDMNLADAMARARVFDIDLQKQLRPYMESMVPLPGIYDPDFIAANQGSRANNVIKGTKKEQMLQIIK 195 (494)
Q Consensus 116 ~~~~dlVfGGwDI~~~~l~ea~~~a~Vl~~~l~~~v~~~L~~i~p~p~v~~~~fia~nq~~ra~nv~~gt~~e~ve~ir~ 195 (494)
.+-.|+||||.| +|.+ .|+.-.+..+|-+.| || ...|.++.-.+-++.+.
T Consensus 73 l~E~dvVfGg~~----kL~~--------------~I~~~~~~~~p~~~I----~V-------~tTC~~~iIGdDi~~v~- 122 (421)
T cd01976 73 FQEKDIVFGGDK----KLAK--------------AIDEAYELFPLNKGI----SV-------QSECPVGLIGDDIEAVA- 122 (421)
T ss_pred CCccceecCCHH----HHHH--------------HHHHHHHhCCCccEE----EE-------ECCChHHHhccCHHHHH-
Confidence 366899999864 4444 444444444431222 22 23444444445556664
Q ss_pred HHHHHHHhcCCCeEEEEEccCCccccc--ccCCccccHHHHHHhhhcCCCCCChhHHHHHHHHhcCCCeecCCCCCC---
Q 011047 196 DIREFKEKNKVDRVVVLWTANTERYSN--VIVGLNDTVENLLASLDKNEAEISPSTLYAIACVLENIPFINGSPQNT--- 270 (494)
Q Consensus 196 DIr~Fk~~~~ld~vVVlw~AsTE~~~~--~~~~~~~t~~~l~~al~~n~~~i~aS~~YA~AAl~aG~~fINgtP~~t--- 270 (494)
++++++.++ .||.+ +|+-|.. ...|.+...+++.+.+........ ..-.-||..+...
T Consensus 123 --~~~~~~~~~-pvi~v---~t~gf~g~s~~~G~~~a~~ai~~~l~~~~~~~~-----------~~~~~VNiiG~~~~~~ 185 (421)
T cd01976 123 --RKASKELGI-PVVPV---RCEGFRGVSQSLGHHIANDAIRDHILGKRNEFE-----------PTPYDVNIIGDYNIGG 185 (421)
T ss_pred --HHHHHhhCC-CEEEE---eCCCccCCcccHHHHHHHHHHHHHHhccCCccC-----------CCCCeEEEEecCCCCc
Confidence 556666665 35544 5666652 111334345566655543211110 1124477666421
Q ss_pred CchhHHHHHHHhCCccc
Q 011047 271 FVPGLIDLAIRRNCLIG 287 (494)
Q Consensus 271 ~ipal~elae~~gvpi~ 287 (494)
-+-.+.++.++.|+.+.
T Consensus 186 d~~el~~lL~~~Gi~v~ 202 (421)
T cd01976 186 DAWASRILLEEMGLRVV 202 (421)
T ss_pred cHHHHHHHHHHcCCeEE
Confidence 12446778888888776
No 38
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=40.41 E-value=34 Score=33.73 Aligned_cols=90 Identities=18% Similarity=0.187 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEEEccCCcccccccCCccccHHHHHHhhhcC----CCC--CChhHHHHHHHH-hcC
Q 011047 187 KEQMLQIIKDIREFKEKNKVDRVVVLWTANTERYSNVIVGLNDTVENLLASLDKN----EAE--ISPSTLYAIACV-LEN 259 (494)
Q Consensus 187 ~e~ve~ir~DIr~Fk~~~~ld~vVVlw~AsTE~~~~~~~~~~~t~~~l~~al~~n----~~~--i~aS~~YA~AAl-~aG 259 (494)
.+-++++++||+.||+ .|.|-+|+=+ =|+-.. +.. ...+.|.++.+.- |.. ..+...-|...+ +.|
T Consensus 68 ~~E~~~M~~dI~~~~~-~GadG~VfG~--L~~dg~-iD~---~~~~~Li~~a~~~~~tFHRAfD~~~d~~~al~~L~~lG 140 (201)
T PF03932_consen 68 DEEIEIMKEDIRMLRE-LGADGFVFGA--LTEDGE-IDE---EALEELIEAAGGMPVTFHRAFDEVPDPEEALEQLIELG 140 (201)
T ss_dssp HHHHHHHHHHHHHHHH-TT-SEEEE----BETTSS-B-H---HHHHHHHHHHTTSEEEE-GGGGGSSTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH-cCCCeeEEEe--ECCCCC-cCH---HHHHHHHHhcCCCeEEEeCcHHHhCCHHHHHHHHHhcC
Confidence 3578889999999998 8999988543 333222 111 1233333333210 111 223344455554 348
Q ss_pred CCee--cCCCCCCC--chhHHHHHHHhC
Q 011047 260 IPFI--NGSPQNTF--VPGLIDLAIRRN 283 (494)
Q Consensus 260 ~~fI--NgtP~~t~--ipal~elae~~g 283 (494)
+.-| -|.+.+.. ++.+.+|.+..+
T Consensus 141 ~~rVLTSGg~~~a~~g~~~L~~lv~~a~ 168 (201)
T PF03932_consen 141 FDRVLTSGGAPTALEGIENLKELVEQAK 168 (201)
T ss_dssp -SEEEESTTSSSTTTCHHHHHHHHHHHT
T ss_pred CCEEECCCCCCCHHHHHHHHHHHHHHcC
Confidence 8888 45553222 466666666544
No 39
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=37.04 E-value=5.7e+02 Score=27.63 Aligned_cols=144 Identities=21% Similarity=0.308 Sum_probs=77.3
Q ss_pred CcccccccccCCCCCCCCCeeeecccCCCCCHHHHHHHCCCCChhHHHHhHHHhhhcCCCCCCCChhhHhhhccccCCCC
Q 011047 102 GEEIYAPFKSILPMVNPDDIVFGGWDISDMNLADAMARARVFDIDLQKQLRPYMESMVPLPGIYDPDFIAANQGSRANNV 181 (494)
Q Consensus 102 ~~~~~~p~~~~lPl~~~~dlVfGGwDI~~~~l~ea~~~a~Vl~~~l~~~v~~~L~~i~p~p~v~~~~fia~nq~~ra~nv 181 (494)
|++-|-+|.. |.++|.-+.|+=.||-. +.|-+.+|++++.+
T Consensus 108 Gera~y~Fee--PqPnppvVtfDVFD~p~--------------pglpkpire~~~dV----------------------- 148 (403)
T COG2069 108 GERAFYRFEE--PQPNPPVVTFDVFDIPR--------------PGLPKPIREHYDDV----------------------- 148 (403)
T ss_pred CcccccccCC--CCCCCCeeEEEeccCCC--------------CCCchhHHHHHHHH-----------------------
Confidence 3455667764 99999999997666632 23444556655444
Q ss_pred ccCCHHHHHHHHHHHHHH----HHHhcCCCeEEEEEccCCcccccccCCc--cccHHHHHHhhhcCCCCCChhHHHHHHH
Q 011047 182 IKGTKKEQMLQIIKDIRE----FKEKNKVDRVVVLWTANTERYSNVIVGL--NDTVENLLASLDKNEAEISPSTLYAIAC 255 (494)
Q Consensus 182 ~~gt~~e~ve~ir~DIr~----Fk~~~~ld~vVVlw~AsTE~~~~~~~~~--~~t~~~l~~al~~n~~~i~aS~~YA~AA 255 (494)
.+|=.+ -.+++|.|-|. |-.-||-|-....++. -.+.|++++|+
T Consensus 149 ------------medP~eWArk~Vk~fgadmvT-iHlIsTdPki~D~p~~EAak~lEdvLqAV----------------- 198 (403)
T COG2069 149 ------------MEDPGEWARKCVKKFGADMVT-IHLISTDPKIKDTPAKEAAKTLEDVLQAV----------------- 198 (403)
T ss_pred ------------hhCHHHHHHHHHHHhCCceEE-EEeecCCccccCCCHHHHHHHHHHHHHhc-----------------
Confidence 222222 23457877654 5688999877433321 12334444433
Q ss_pred HhcCCCeecCCCCCC-CchhHHHHHHHh----CCccccCCCCCCcchhHHHHHHHHHhcCCceeEEEeeee
Q 011047 256 VLENIPFINGSPQNT-FVPGLIDLAIRR----NCLIGGDDFKSGQTKMKSVLVDFLVGAGIKPTSIVSYNH 321 (494)
Q Consensus 256 l~aG~~fINgtP~~t-~ipal~elae~~----gvpi~GdD~KSGqT~lks~La~~l~~RGlkv~s~~s~Ni 321 (494)
.||+|=|-..|. -.|.+.+.|.+. .+-++.-.. -+=-..+++.-...|-.|.+|.|..+
T Consensus 199 ---dvPiiiGGSGnpeKDpeVlekaAEvaEGeRclLaSanl----dlDy~~ia~AA~ky~H~VLswt~~D~ 262 (403)
T COG2069 199 ---DVPIIIGGSGNPEKDPEVLEKAAEVAEGERCLLASANL----DLDYERIAEAALKYDHVVLSWTQMDV 262 (403)
T ss_pred ---CcCEEecCCCCCccCHHHHHHHHHhhcCceEEeecccc----ccCHHHHHHHHHhcCceEEEeeccCh
Confidence 566665554443 366666665442 111111100 01123456666677778888887543
No 40
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=37.01 E-value=2.5e+02 Score=30.02 Aligned_cols=122 Identities=20% Similarity=0.216 Sum_probs=71.7
Q ss_pred HHHHHHhcCCCeEEEEEccCCc------ccccccCCccccHHHHHHhhhcCCC-CCCh-hHHHHHHHHhc--CCCeecCC
Q 011047 197 IREFKEKNKVDRVVVLWTANTE------RYSNVIVGLNDTVENLLASLDKNEA-EISP-STLYAIACVLE--NIPFINGS 266 (494)
Q Consensus 197 Ir~Fk~~~~ld~vVVlw~AsTE------~~~~~~~~~~~t~~~l~~al~~n~~-~i~a-S~~YA~AAl~a--G~~fINgt 266 (494)
|++.-++.|++.+++...++|- .|...+. -..|.++++++-+..-- -+.+ +..++-..+++ |+||+.+.
T Consensus 174 l~~lL~~~Gl~v~~~~~~s~~~d~~~~~~~~~~~~-gg~~~e~i~~~~~A~lniv~~~~~~~~~a~~L~e~~GiP~~~~~ 252 (428)
T cd01965 174 IKRILEAFGLEPIILPDLSDSLDGHLTDGYSPLTK-GGTTLEEIRDAGNAKATIALGEYSGRKAAKALEEKFGVPYILFP 252 (428)
T ss_pred HHHHHHHcCCCEEEecCcccccCCCCCCCccccCC-CCCcHHHHHHhccCcEEEEEChhhhHHHHHHHHHHHCCCeeecC
Confidence 4555567899988877666543 3333332 25689999986544211 1566 77777777765 99999887
Q ss_pred -CCCC--CchhHHHHHHHhCCcc----------------------ccCCCCC-CcchhHHHHHHHHHhcCCceeEEEee
Q 011047 267 -PQNT--FVPGLIDLAIRRNCLI----------------------GGDDFKS-GQTKMKSVLVDFLVGAGIKPTSIVSY 319 (494)
Q Consensus 267 -P~~t--~ipal~elae~~gvpi----------------------~GdD~KS-GqT~lks~La~~l~~RGlkv~s~~s~ 319 (494)
|-.. ...-+.++++-.|.+. .|.-+-= |..-.--.|+++|.+.|..|...+..
T Consensus 253 ~p~G~~~t~~~l~~l~~~~g~~~~~~~~~~r~~~~~~~~~~~~~l~gk~v~i~~~~~~~~~l~~~L~e~G~~v~~v~~~ 331 (428)
T cd01965 253 TPIGLKATDEFLRALSKLSGKPIPEELERERGRLLDAMLDSHFYLGGKRVAIAGDPDLLLGLSRFLLEMGAEPVAAVTG 331 (428)
T ss_pred CCcChHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcChHHHHHHHHHHHHcCCcceEEEEc
Confidence 5310 0122333333333222 2222110 44444557999999999999887773
No 41
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=36.78 E-value=1.3e+02 Score=32.97 Aligned_cols=86 Identities=17% Similarity=0.187 Sum_probs=49.7
Q ss_pred HHHHHhcCCCeEEEEEccCC-----cccccccCCccccHHHHHHhhhcCCCC--CCh-hHHHHHHHHhc--CCCeecC-C
Q 011047 198 REFKEKNKVDRVVVLWTANT-----ERYSNVIVGLNDTVENLLASLDKNEAE--ISP-STLYAIACVLE--NIPFING-S 266 (494)
Q Consensus 198 r~Fk~~~~ld~vVVlw~AsT-----E~~~~~~~~~~~t~~~l~~al~~n~~~--i~a-S~~YA~AAl~a--G~~fINg-t 266 (494)
++.-++.|++.+++..++|- +.+..+.. -..|.++++++=+.. -. +.+ +..++-..+++ |+||+++ +
T Consensus 188 k~lL~~~Gl~v~~l~d~~s~d~~~~~~~~~~~~-gg~tleei~~~~~A~-lniv~~~~~g~~~A~~Lee~~giP~~~~~~ 265 (461)
T TIGR02931 188 KHLLEEMDIEANVLFEIESFDSPLMPDKSAVSH-GSTTIEDLTDTANAK-GTIALNRYEGMKAADYLQKKFDVPAIIGPT 265 (461)
T ss_pred HHHHHHcCCceEEeeccccccCCCCCcccccCC-CCCcHHHHHhhccCc-EEEEEcHhhHHHHHHHHHHHhCCCeeccCC
Confidence 34445679988876665322 22222222 345899999865432 12 333 56777666765 9999987 5
Q ss_pred CCCCC---chhHHHHHHHhCCcc
Q 011047 267 PQNTF---VPGLIDLAIRRNCLI 286 (494)
Q Consensus 267 P~~t~---ipal~elae~~gvpi 286 (494)
|- .+ ..-+.++++-.|.++
T Consensus 266 pi-Gi~~T~~fl~~l~~~~g~~~ 287 (461)
T TIGR02931 266 PI-GIRNTDTFLQNLKKMTGKPI 287 (461)
T ss_pred Cc-chHHHHHHHHHHHHHHCCCC
Confidence 63 22 233666776666543
No 42
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=35.94 E-value=4.2e+02 Score=31.50 Aligned_cols=129 Identities=9% Similarity=0.040 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCe-EEEEEccCCcccccc--cC----------CccccHHHHHHhhhcCCC---------
Q 011047 186 KKEQMLQIIKDIREFKEKNKVDR-VVVLWTANTERYSNV--IV----------GLNDTVENLLASLDKNEA--------- 243 (494)
Q Consensus 186 ~~e~ve~ir~DIr~Fk~~~~ld~-vVVlw~AsTE~~~~~--~~----------~~~~t~~~l~~al~~n~~--------- 243 (494)
-+..+++|.+.=..|++++|++- |+-|-.++...+.+. .. ....+.+.+.+.+...+.
T Consensus 470 G~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~vvVd~t 549 (810)
T PRK09466 470 GSRWLELFAREQSTLSARTGFEFVLVGVVDSRRSLLNYDGLDASRALAFFDDEAVEWDEESLFLWLRAHPYDELVVLDVT 549 (810)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCEEEEEEEeCCccccCccCCCHHHHHhhHHhhcCCccHHHHHHHHhhcCCCCcEEEECC
Confidence 56778888877778889899884 443433333322210 00 001133444455543322
Q ss_pred -CCChhHHHHHHHHhcCCCeecCCCCC-----CCchhHHHHHHHhCCccccCCCCC---CcchhHHHHHHHHHhcCCcee
Q 011047 244 -EISPSTLYAIACVLENIPFINGSPQN-----TFVPGLIDLAIRRNCLIGGDDFKS---GQTKMKSVLVDFLVGAGIKPT 314 (494)
Q Consensus 244 -~i~aS~~YA~AAl~aG~~fINgtP~~-----t~ipal~elae~~gvpi~GdD~KS---GqT~lks~La~~l~~RGlkv~ 314 (494)
..++...|. +|++.|+.-|=.-=.. ..-+.+.++|+++|+.+. +.+ |.+++-..|-.++. .|=++.
T Consensus 550 ~~~~~~~~~~-~aL~~G~~VVtaNK~~~a~~~~~~~~l~~~a~~~~~~~~---yEasV~~giPii~~l~~l~~-~gd~i~ 624 (810)
T PRK09466 550 ASEQLALQYP-DFASHGFHVISANKLAGSSPSNFYRQIKDAFAKTGRHWL---YNATVGAGLPINHTVRDLRN-SGDSIL 624 (810)
T ss_pred CChHHHHHHH-HHHHcCCEEEcCCcccccccHHHHHHHHHHHHHcCCeEE---EeceeeeccChHHHHHHHHh-ccCcEE
Confidence 123445666 9999999997322210 124778899999998776 333 88898777777554 488888
Q ss_pred EEEee
Q 011047 315 SIVSY 319 (494)
Q Consensus 315 s~~s~ 319 (494)
++...
T Consensus 625 ~i~GI 629 (810)
T PRK09466 625 AISGI 629 (810)
T ss_pred EEEEE
Confidence 87764
No 43
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.35 E-value=1.8e+02 Score=30.33 Aligned_cols=102 Identities=13% Similarity=0.195 Sum_probs=65.9
Q ss_pred HHHHHhcCCCeEEEEEccCCcccccccCCccccHHHHHHhhhcC--CCCCChhHHHHHHHHhcCCCeecCCCCCCCchhH
Q 011047 198 REFKEKNKVDRVVVLWTANTERYSNVIVGLNDTVENLLASLDKN--EAEISPSTLYAIACVLENIPFINGSPQNTFVPGL 275 (494)
Q Consensus 198 r~Fk~~~~ld~vVVlw~AsTE~~~~~~~~~~~t~~~l~~al~~n--~~~i~aS~~YA~AAl~aG~~fINgtP~~t~ipal 275 (494)
++.-+...+|-++|- .+-|.|-+...+.++|.-. -+-++|-.+--... ..-.|+=|||. |.
T Consensus 83 ~~lN~d~~V~GIivq----------lPlp~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~--~~~~~~PcTp~-----av 145 (284)
T PRK14179 83 ERYNQDPTWHGILVQ----------LPLPKHINEEKILLAIDPKKDVDGFHPMNTGHLWS--GRPVMIPCTPA-----GI 145 (284)
T ss_pred HHHhCCCCCCEEEEc----------CCCCCCCCHHHHHhccCccccccccCHhhHHHHhC--CCCCCcCCCHH-----HH
Confidence 455555555666643 1113455677777777542 12255543322111 12236666665 89
Q ss_pred HHHHHHhCCccccCCCCC-Cc-chhHHHHHHHHHhcCCceeEE
Q 011047 276 IDLAIRRNCLIGGDDFKS-GQ-TKMKSVLVDFLVGAGIKPTSI 316 (494)
Q Consensus 276 ~elae~~gvpi~GdD~KS-Gq-T~lks~La~~l~~RGlkv~s~ 316 (494)
.++-+..++++.|++.-= |. -.|=.-||-+|..+|..|..|
T Consensus 146 i~lL~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~ 188 (284)
T PRK14179 146 MEMFREYNVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLT 188 (284)
T ss_pred HHHHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEE
Confidence 999999999999998643 66 678889999999999999887
No 44
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=35.26 E-value=1.7e+02 Score=30.77 Aligned_cols=140 Identities=20% Similarity=0.169 Sum_probs=89.1
Q ss_pred CCCHHH---HHHHCCCCChhHHHHhHHHhhhcCCCCCCCChhhHhhhccccCCCCccCCHHHHHHHHHHHHHHHHHhcCC
Q 011047 130 DMNLAD---AMARARVFDIDLQKQLRPYMESMVPLPGIYDPDFIAANQGSRANNVIKGTKKEQMLQIIKDIREFKEKNKV 206 (494)
Q Consensus 130 ~~~l~e---a~~~a~Vl~~~l~~~v~~~L~~i~p~p~v~~~~fia~nq~~ra~nv~~gt~~e~ve~ir~DIr~Fk~~~~l 206 (494)
..|.++ .|.+||+---.+=+|+-|..-.-.|-+.++ +..+++++|++=- +=+. +-
T Consensus 92 ~~nvartV~~~~~aG~agi~iEDq~~pk~cgh~~gk~l~-------------------~~~e~v~rIkAa~-~a~~--~~ 149 (289)
T COG2513 92 ALNVARTVRELEQAGAAGIHIEDQVGPKRCGHLPGKELV-------------------SIDEMVDRIKAAV-EARR--DP 149 (289)
T ss_pred HHHHHHHHHHHHHcCcceeeeeecccchhcCCCCCCCcC-------------------CHHHHHHHHHHHH-Hhcc--CC
Confidence 445543 455788876656566655421111111111 5678899887542 2121 12
Q ss_pred CeEEEEEccCCcccccccCCccccHHHHHHhhhcCCCCCChhHHHHHHHHhcCCCeecCCCCCCCchhHHHHHHHhCCcc
Q 011047 207 DRVVVLWTANTERYSNVIVGLNDTVENLLASLDKNEAEISPSTLYAIACVLENIPFINGSPQNTFVPGLIDLAIRRNCLI 286 (494)
Q Consensus 207 d~vVVlw~AsTE~~~~~~~~~~~t~~~l~~al~~n~~~i~aS~~YA~AAl~aG~~fINgtP~~t~ipal~elae~~gvpi 286 (494)
|=| -+|.||-+. +. .|+++|++ |.|.+++|+--| +.|..+-...+.++++.-.+|+
T Consensus 150 ~fv---i~ARTda~~-----~~----~ld~AI~R-----------a~AY~eAGAD~i-f~~al~~~e~i~~f~~av~~pl 205 (289)
T COG2513 150 DFV---IIARTDALL-----VE----GLDDAIER-----------AQAYVEAGADAI-FPEALTDLEEIRAFAEAVPVPL 205 (289)
T ss_pred CeE---EEeehHHHH-----hc----cHHHHHHH-----------HHHHHHcCCcEE-ccccCCCHHHHHHHHHhcCCCe
Confidence 222 389999875 11 16667766 556678898888 8887555566777778877888
Q ss_pred ccCCCCCCcchhHHHHHHHHHhcCCceeEEE
Q 011047 287 GGDDFKSGQTKMKSVLVDFLVGAGIKPTSIV 317 (494)
Q Consensus 287 ~GdD~KSGqT~lks~La~~l~~RGlkv~s~~ 317 (494)
.=+=..-|.|.+-++ +-|.+-|++..++=
T Consensus 206 ~~N~t~~g~tp~~~~--~~L~~~Gv~~V~~~ 234 (289)
T COG2513 206 PANITEFGKTPLLTV--AELAELGVKRVSYG 234 (289)
T ss_pred eeEeeccCCCCCcCH--HHHHhcCceEEEEC
Confidence 877777788887776 78999999988763
No 45
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=34.76 E-value=2.1e+02 Score=32.02 Aligned_cols=206 Identities=21% Similarity=0.256 Sum_probs=0.0
Q ss_pred cccCCCCCC----CCCeeeecccCCCCCHHHHHHH-------------CCCCChhHHHHhHHHhhh-----cCCCCCCCC
Q 011047 109 FKSILPMVN----PDDIVFGGWDISDMNLADAMAR-------------ARVFDIDLQKQLRPYMES-----MVPLPGIYD 166 (494)
Q Consensus 109 ~~~~lPl~~----~~dlVfGGwDI~~~~l~ea~~~-------------a~Vl~~~l~~~v~~~L~~-----i~p~p~v~~ 166 (494)
|+.-+|.++ -+|.||||.|--...+.++..+ +.++-.|+..-++..-++ -.|.+.|--
T Consensus 106 f~ep~~~~sT~m~E~~aVfGG~~~L~e~I~~~~~~y~P~~I~V~tTC~~evIGDDi~a~i~~~~~~~~~p~~~pVi~v~T 185 (515)
T TIGR01286 106 FKEPVSAVSSSMTEDAAVFGGLKNMVDGLQNCYALYKPKMIAVSTTCMAEVIGDDLNAFIGNAKKEGFIPDDFPVPFAHT 185 (515)
T ss_pred CCCCcccccccCCCCceeeCcHHHHHHHHHHHHHhcCCCEEEEeCCcHHHHhhccHHHHHHHHHHhcCCCCCCceEEeeC
Q ss_pred hhhHhh-------------------------hccccCCCCccC--CHHHHHHHHHHHHHHHHHhcCCCeEE------EEE
Q 011047 167 PDFIAA-------------------------NQGSRANNVIKG--TKKEQMLQIIKDIREFKEKNKVDRVV------VLW 213 (494)
Q Consensus 167 ~~fia~-------------------------nq~~ra~nv~~g--t~~e~ve~ir~DIr~Fk~~~~ld~vV------Vlw 213 (494)
|.|... ....+.-|+++| +-..-++.|+ |=+.+ .|++.++ ++.
T Consensus 186 pgF~Gs~~~Gyd~a~~ail~~l~~~~~~~~~~~~~~~VNii~g~~~~~gd~~eik---rlL~~-~Gi~~~~l~d~s~~~d 261 (515)
T TIGR01286 186 PSFVGSHITGYDNMFKGILEYFTKGSMDDKVVGSNGKINIIPGFETYIGNFREIK---RILSL-MGVGYTLLSDPEEVLD 261 (515)
T ss_pred CCCcccHHHHHHHHHHHHHHHHhhcccccccCCCCCeEEEECCCCCCchhHHHHH---HHHHH-cCCCeEEccCcccccc
Q ss_pred ccCCcccccccCCccccHHHHHHhhhcCCCC-CCh-hHHHHHHHHhc--CCCeecCC-CCCCC--chhHHHHHHHhCCc-
Q 011047 214 TANTERYSNVIVGLNDTVENLLASLDKNEAE-ISP-STLYAIACVLE--NIPFINGS-PQNTF--VPGLIDLAIRRNCL- 285 (494)
Q Consensus 214 ~AsTE~~~~~~~~~~~t~~~l~~al~~n~~~-i~a-S~~YA~AAl~a--G~~fINgt-P~~t~--ipal~elae~~gvp- 285 (494)
+-.+..|. ..++ ..|.+++.++...--.- +.+ +..++..-+++ |.||+... |-..- ..-+.++++-.|.|
T Consensus 262 ~p~~g~~~-~~~g-gttleei~~a~~A~~~ivl~~~~~~~~a~~l~~~~g~p~~~~~~PiGi~~Td~fL~~la~~~g~~i 339 (515)
T TIGR01286 262 TPADGEFR-MYAG-GTTLEEMKDAPNAEATVLLQPYTLRKTKEYIEKTWKQETPKLNIPLGVKGTDEFLMKVSEISGQPI 339 (515)
T ss_pred CCCCCCcc-ccCC-CCCHHHHHHhhhCcEEEEEchhhhHHHHHHHHHHhCCCcccCCCCccHHHHHHHHHHHHHHHCCCC
Q ss_pred ---------------------cccCCCCC-CcchhHHHHHHHHHhcCCceeEEEeee
Q 011047 286 ---------------------IGGDDFKS-GQTKMKSVLVDFLVGAGIKPTSIVSYN 320 (494)
Q Consensus 286 ---------------------i~GdD~KS-GqT~lks~La~~l~~RGlkv~s~~s~N 320 (494)
+.|+-+.- |..-+=-.|+.||.+-|+.|......|
T Consensus 340 p~~i~~eR~rl~dam~d~~~~l~GKrvaI~gdpd~~~~l~~fL~ElGmepv~v~~~~ 396 (515)
T TIGR01286 340 PAELTKERGRLVDAMTDSHAWLHGKRFAIYGDPDFVMGLVRFVLELGCEPVHILCTN 396 (515)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCceEEEECCHHHHHHHHHHHHHCCCEEEEEEeCC
No 46
>COG2403 Predicted GTPase [General function prediction only]
Probab=33.60 E-value=90 Score=34.31 Aligned_cols=89 Identities=10% Similarity=0.131 Sum_probs=57.1
Q ss_pred HHHHHHhhhcCC--------CCCChhHHH--HHHHHhcCCCeecCCCCCCCchhHHHHHHHhCCccccCCCCCCcchhHH
Q 011047 231 VENLLASLDKNE--------AEISPSTLY--AIACVLENIPFINGSPQNTFVPGLIDLAIRRNCLIGGDDFKSGQTKMKS 300 (494)
Q Consensus 231 ~~~l~~al~~n~--------~~i~aS~~Y--A~AAl~aG~~fINgtP~~t~ipal~elae~~gvpi~GdD~KSGqT~lks 300 (494)
.+.|++.|++++ ++++++..+ |.+.+.+|+.|--+-|..+. ..-++--+-|.|---.-|.|-+.+
T Consensus 71 ~~~lek~ire~~VD~~VlaySDvs~e~v~~IaS~vLs~GA~f~~~gP~et~-----~~~ekPviaV~atrtg~GKsaVS~ 145 (449)
T COG2403 71 YDDLEKIIREKDVDIVVLAYSDVSYEHVFRIASRVLSAGADFKELGPKETM-----LKLEKPVIAVTATRTGVGKSAVSR 145 (449)
T ss_pred HHHHHHHHHHcCCCeEEEEcccCCHHHHHHHHHHHHhCCceeEEeCccHHh-----hhhcCceEEEEEeccccchhHHHH
Confidence 355555555432 236777665 55667899999999996322 122222233444433349999999
Q ss_pred HHHHHHHhcCCceeEEEeeeecCC
Q 011047 301 VLVDFLVGAGIKPTSIVSYNHLGN 324 (494)
Q Consensus 301 ~La~~l~~RGlkv~s~~s~NilGN 324 (494)
-++..|++||.+|.-+.-=-+-++
T Consensus 146 ~v~r~l~ergyrv~vVrhPmiy~~ 169 (449)
T COG2403 146 YVARLLRERGYRVCVVRHPMIYRG 169 (449)
T ss_pred HHHHHHHHcCCceEEEecCceecC
Confidence 999999999999987765444443
No 47
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=33.17 E-value=24 Score=35.76 Aligned_cols=27 Identities=11% Similarity=0.053 Sum_probs=23.5
Q ss_pred hhhhccCcchhHHHHHHHHhhhhhhcC
Q 011047 45 LGLCLWVGVETTAQLSRVVLSRIESEG 71 (494)
Q Consensus 45 v~lvG~gG~v~TT~~aG~~A~~~~r~g 71 (494)
|.++|..|.||+|.+++-+|--+.|.|
T Consensus 4 iai~s~kGGvG~TTltAnLA~aL~~~G 30 (243)
T PF06564_consen 4 IAIVSPKGGVGKTTLTANLAWALARLG 30 (243)
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHHCC
Confidence 457899999999999999999777777
No 48
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.81 E-value=2.5e+02 Score=29.33 Aligned_cols=83 Identities=12% Similarity=0.160 Sum_probs=56.6
Q ss_pred ccccHHHHHHhhhcC-C-CCCChhHHHHHHHHhcCCCeecCCCCCCCchhHHHHHHHhCCccccCCCCC-Ccchh-HHHH
Q 011047 227 LNDTVENLLASLDKN-E-AEISPSTLYAIACVLENIPFINGSPQNTFVPGLIDLAIRRNCLIGGDDFKS-GQTKM-KSVL 302 (494)
Q Consensus 227 ~~~t~~~l~~al~~n-~-~~i~aS~~YA~AAl~aG~~fINgtP~~t~ipal~elae~~gvpi~GdD~KS-GqT~l-ks~L 302 (494)
.|-+.+.+.++|.-. | +-++|-.+--.. ...-.|+=|||. |..++.+..++++.|...-= |.+.+ =+-|
T Consensus 102 ~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~--~~~~~~~PcTp~-----aii~lL~~~~i~l~Gk~vvViGrs~iVGkPl 174 (285)
T PRK14189 102 KHIDSHKVIEAIAPEKDVDGFHVANAGALM--TGQPLFRPCTPY-----GVMKMLESIGIPLRGAHAVVIGRSNIVGKPM 174 (285)
T ss_pred CCCCHHHHHhhcCcccCcccCChhhhhHhh--CCCCCCcCCCHH-----HHHHHHHHcCCCCCCCEEEEECCCCccHHHH
Confidence 466677777777642 1 225444333222 123346666765 89999999999998887533 66665 8899
Q ss_pred HHHHHhcCCceeEE
Q 011047 303 VDFLVGAGIKPTSI 316 (494)
Q Consensus 303 a~~l~~RGlkv~s~ 316 (494)
+.+|..+|..|...
T Consensus 175 a~lL~~~~atVt~~ 188 (285)
T PRK14189 175 AMLLLQAGATVTIC 188 (285)
T ss_pred HHHHHHCCCEEEEe
Confidence 99999999998874
No 49
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=31.87 E-value=3e+02 Score=29.52 Aligned_cols=57 Identities=14% Similarity=-0.008 Sum_probs=30.9
Q ss_pred hcCCCeEEEEEccCCcccccccCCccccHHHHHHhhhcCCCC-CC---hhHHHHHHHHhcCCCee
Q 011047 203 KNKVDRVVVLWTANTERYSNVIVGLNDTVENLLASLDKNEAE-IS---PSTLYAIACVLENIPFI 263 (494)
Q Consensus 203 ~~~ld~vVVlw~AsTE~~~~~~~~~~~t~~~l~~al~~n~~~-i~---aS~~YA~AAl~aG~~fI 263 (494)
+.|+|-|+|=...-.+.|.. . . ..++++.+.+++.+-. |. .+.--|..++++||..|
T Consensus 152 eaGvd~I~vhgrt~~~~h~~-~--~-~~~~~i~~~ik~~~ipVIaG~V~t~e~A~~l~~aGAD~V 212 (368)
T PRK08649 152 EAGVDLFVIQGTVVSAEHVS-K--E-GEPLNLKEFIYELDVPVIVGGCVTYTTALHLMRTGAAGV 212 (368)
T ss_pred HCCCCEEEEeccchhhhccC-C--c-CCHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCEE
Confidence 46888777544333334431 0 0 1356666666654322 11 44456777778898886
No 50
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.72 E-value=3.1e+02 Score=28.60 Aligned_cols=84 Identities=18% Similarity=0.248 Sum_probs=59.0
Q ss_pred CccccHHHHHHhhhcC--CCCCChhHHHHHHHHhcCCCeecCCCCCCCchhHHHHHHHhCCccccCCCCC-Ccc-hhHHH
Q 011047 226 GLNDTVENLLASLDKN--EAEISPSTLYAIACVLENIPFINGSPQNTFVPGLIDLAIRRNCLIGGDDFKS-GQT-KMKSV 301 (494)
Q Consensus 226 ~~~~t~~~l~~al~~n--~~~i~aS~~YA~AAl~aG~~fINgtP~~t~ipal~elae~~gvpi~GdD~KS-GqT-~lks~ 301 (494)
|.|-+...+.++|.-. -+-++|-.+--.+ ...-.|+=|||. +..++-+..++++.|+..-= |.. .+=+-
T Consensus 100 P~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~--~g~~~~~PcTp~-----avi~lL~~~~i~l~Gk~vvVvGrs~~VG~P 172 (285)
T PRK14191 100 PRHIDTKMVLEAIDPNKDVDGFHPLNIGKLC--SQLDGFVPATPM-----GVMRLLKHYHIEIKGKDVVIIGASNIVGKP 172 (285)
T ss_pred CCCCCHHHHHhcCCccccccccChhhHHHHh--cCCCCCCCCcHH-----HHHHHHHHhCCCCCCCEEEEECCCchhHHH
Confidence 3566777788777642 1226655543332 122346767775 89999999999999887643 666 88899
Q ss_pred HHHHHHhcCCceeEE
Q 011047 302 LVDFLVGAGIKPTSI 316 (494)
Q Consensus 302 La~~l~~RGlkv~s~ 316 (494)
||-+|..+|-.|...
T Consensus 173 la~lL~~~gAtVtv~ 187 (285)
T PRK14191 173 LAMLMLNAGASVSVC 187 (285)
T ss_pred HHHHHHHCCCEEEEE
Confidence 999999999888765
No 51
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=31.62 E-value=2.8e+02 Score=28.99 Aligned_cols=105 Identities=18% Similarity=0.143 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCeEEEEEccCCcccccccCCccccHHHHHHhhhcCCCCCChhHHHHHHHHhcCCCeec
Q 011047 185 TKKEQMLQIIKDIREFKEKNKVDRVVVLWTANTERYSNVIVGLNDTVENLLASLDKNEAEISPSTLYAIACVLENIPFIN 264 (494)
Q Consensus 185 t~~e~ve~ir~DIr~Fk~~~~ld~vVVlw~AsTE~~~~~~~~~~~t~~~l~~al~~n~~~i~aS~~YA~AAl~aG~~fIN 264 (494)
+..+++++|++=. ..+.+.|-+| .|.|+.+.. + .++++|++ ...| .++|+--|
T Consensus 131 ~~ee~~~kI~Aa~---~a~~~~d~~I---iARTDa~~~-----~----g~deAI~R-------a~aY----~eAGAD~i- 183 (292)
T PRK11320 131 SQEEMVDRIKAAV---DARTDPDFVI---MARTDALAV-----E----GLDAAIER-------AQAY----VEAGADMI- 183 (292)
T ss_pred CHHHHHHHHHHHH---HhccCCCeEE---EEecCcccc-----c----CHHHHHHH-------HHHH----HHcCCCEE-
Confidence 4668888887432 2334656444 699998751 2 14555544 1223 34455543
Q ss_pred CCCCCCCchhHHHHHHHhCCccccCCCCCCcchhHHHHHHHHHhcCCceeEEEe
Q 011047 265 GSPQNTFVPGLIDLAIRRNCLIGGDDFKSGQTKMKSVLVDFLVGAGIKPTSIVS 318 (494)
Q Consensus 265 gtP~~t~ipal~elae~~gvpi~GdD~KSGqT~lks~La~~l~~RGlkv~s~~s 318 (494)
+.|.......+.+++++-.+|+..+=...|.|..-+ .+-|.+-|++..++-.
T Consensus 184 fi~~~~~~~~i~~~~~~~~~Pl~~n~~~~~~~p~~s--~~~L~~lGv~~v~~~~ 235 (292)
T PRK11320 184 FPEAMTELEMYRRFADAVKVPILANITEFGATPLFT--TEELASAGVAMVLYPL 235 (292)
T ss_pred EecCCCCHHHHHHHHHhcCCCEEEEeccCCCCCCCC--HHHHHHcCCcEEEECh
Confidence 334323355566777777888866443335443222 4557788888877654
No 52
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=29.67 E-value=1.5e+02 Score=31.48 Aligned_cols=62 Identities=18% Similarity=0.289 Sum_probs=39.5
Q ss_pred hhHhhhccccCCCCccCCHHHHHHHHHHHHHHHHHhcCCCeEEEEEccCCcccccccCCccccHHHHHHhhh
Q 011047 168 DFIAANQGSRANNVIKGTKKEQMLQIIKDIREFKEKNKVDRVVVLWTANTERYSNVIVGLNDTVENLLASLD 239 (494)
Q Consensus 168 ~fia~nq~~ra~nv~~gt~~e~ve~ir~DIr~Fk~~~~ld~vVVlw~AsTE~~~~~~~~~~~t~~~l~~al~ 239 (494)
+.-+.+++.|..- .+.+++..++.|.+.|++|-++.+- +|. + +|+ +.+|+||+.+++++.++
T Consensus 210 SLha~dd~~r~~l-~pi~~~~~L~~ll~~~~~~l~~~~~-~V~-i------ry~-LI~GvNDs~e~a~~L~~ 271 (347)
T PRK14453 210 SLHSPFESQRSEL-MPINKRFPLNEVMKTLDEHIRHTGR-KVY-I------AYI-MLEGVNDSKEHAEAVVG 271 (347)
T ss_pred EecCCCHHHHHHh-cCccccccHHHHHHHHHHHHHhcCC-cEE-E------EEE-eECCCCCCHHHHHHHHH
Confidence 3334444443332 2335566788888888999887773 333 2 344 77899999888876553
No 53
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=29.54 E-value=90 Score=34.19 Aligned_cols=153 Identities=14% Similarity=0.068 Sum_probs=76.7
Q ss_pred CCCCeeeecccCCCCCHHHHHHHCCCCChhHHHHhHHHhhhcCCCCCCCChhhHhhhccccCCCCccCCHHHHHHHHHHH
Q 011047 117 NPDDIVFGGWDISDMNLADAMARARVFDIDLQKQLRPYMESMVPLPGIYDPDFIAANQGSRANNVIKGTKKEQMLQIIKD 196 (494)
Q Consensus 117 ~~~dlVfGGwDI~~~~l~ea~~~a~Vl~~~l~~~v~~~L~~i~p~p~v~~~~fia~nq~~ra~nv~~gt~~e~ve~ir~D 196 (494)
+-+|+||||.| +|. +.|++-.+..+|-+.| || ...|.++.--+-++.+.
T Consensus 107 ~E~diVfGGe~----kL~--------------~aI~e~~~~~~P~~~I----~V-------~tTC~~~lIGDDi~av~-- 155 (466)
T TIGR01282 107 QEKDIVFGGDK----KLK--------------KAIDEIEELFPLNKGI----SI-------QSECPVGLIGDDIEAVA-- 155 (466)
T ss_pred CccceecCcHH----HHH--------------HHHHHHHHhCCcccEE----EE-------eCCChHHHhccCHHHHH--
Confidence 45788888763 444 4444445555442223 22 33444443444555554
Q ss_pred HHHHHHhcCCCeEEEEEccCCccccc--ccCCccccHHHHHHhhhcCCCCCChhHHHHHHHHhcCCCeecCCCCCCC---
Q 011047 197 IREFKEKNKVDRVVVLWTANTERYSN--VIVGLNDTVENLLASLDKNEAEISPSTLYAIACVLENIPFINGSPQNTF--- 271 (494)
Q Consensus 197 Ir~Fk~~~~ld~vVVlw~AsTE~~~~--~~~~~~~t~~~l~~al~~n~~~i~aS~~YA~AAl~aG~~fINgtP~~t~--- 271 (494)
++++++++. .|| ..+|+-|.- ...|.+...+++.+.+......-. ....-.-||..+....
T Consensus 156 -~~~~~~~~~-pVi---~v~t~gf~G~s~~~G~~~a~~ai~~~l~~~~~~~~---------~~~~~~~VNiiG~~~~~gd 221 (466)
T TIGR01282 156 -KKASKELGK-PVV---PVRCEGFRGVSQSLGHHIANDAVRDWVLGKGDKEK---------FEPTPYDVAIIGDYNIGGD 221 (466)
T ss_pred -HHHhhhcCC-cEE---EEeCCCcCCchhhHHHHHHHHHHHHHhhccccccc---------cCCCCCeEEEEecCCCccc
Confidence 556666664 345 346777752 111334345566655432211000 0011245887774211
Q ss_pred chhHHHHHHHhCCccccCCCCCCcch-------------h---H--HHHHHHHHhc-CCceeE
Q 011047 272 VPGLIDLAIRRNCLIGGDDFKSGQTK-------------M---K--SVLVDFLVGA-GIKPTS 315 (494)
Q Consensus 272 ipal~elae~~gvpi~GdD~KSGqT~-------------l---k--s~La~~l~~R-Glkv~s 315 (494)
+-.+.++.++.|+.+. -++..+.|. + . ..+|++|.+| |+.-..
T Consensus 222 ~~eik~lL~~~Gi~v~-~~~sg~~t~~~i~~~~~A~lniv~~~~~~~~~A~~Le~~fGiP~~~ 283 (466)
T TIGR01282 222 AWESRILLEEIGLRVV-AQWSGDGTLNEMENAPKAKLNLIHCYRSMNYISRHMEEKYGIPWME 283 (466)
T ss_pred HHHHHHHHHHcCCeEE-EEECCCCCHHHHHhcccCCEEEEEChHHHHHHHHHHHHHhCCceEe
Confidence 3457788899998875 333222111 1 1 2479999988 776543
No 54
>PRK07165 F0F1 ATP synthase subunit alpha; Validated
Probab=29.44 E-value=36 Score=38.14 Aligned_cols=121 Identities=19% Similarity=0.249 Sum_probs=66.1
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCeEEEEEccCCccccc-ccCC------------------ccccHHHHHHhhhc----
Q 011047 184 GTKKEQMLQIIKDIREFKEKNKVDRVVVLWTANTERYSN-VIVG------------------LNDTVENLLASLDK---- 240 (494)
Q Consensus 184 gt~~e~ve~ir~DIr~Fk~~~~ld~vVVlw~AsTE~~~~-~~~~------------------~~~t~~~l~~al~~---- 240 (494)
|-+..-+..+. ++|++...+++.||+..++ |++.. ...+ +.|+.-.+-.|..+
T Consensus 180 Ger~~ev~~~~---~~l~~~gal~~tvvV~ats-d~~~~r~~ap~~a~tiAEyfrd~~dVLlv~DdLTr~A~A~REisLl 255 (507)
T PRK07165 180 GQKRENLSRIY---ETLKEHDALKNTIIIDAPS-TSPYEQYLAPYVAMAHAENISYNDDVLIVFDDLTKHANIYREIALL 255 (507)
T ss_pred cCChHHHHHHH---HHhhhcCceeeeEEEEeCC-CCHHHHHHHHHHHHHHHHHHHhcCceEEEEcChHHHHHHHHHHHhh
Confidence 55555666665 6677778899999887666 65432 1111 11222111122211
Q ss_pred -CC----CCCChhHHHHHHHHhcCCCeecCCCCCCCchhHHHHHHHhCCccccCCCCC---CcchhHHHHHHHHHhcCCc
Q 011047 241 -NE----AEISPSTLYAIACVLENIPFINGSPQNTFVPGLIDLAIRRNCLIGGDDFKS---GQTKMKSVLVDFLVGAGIK 312 (494)
Q Consensus 241 -n~----~~i~aS~~YA~AAl~aG~~fINgtP~~t~ipal~elae~~gvpi~GdD~KS---GqT~lks~La~~l~~RGlk 312 (494)
.+ .-.|++.+|.-+-|.|++.-+++.-|.|.+|.+.--+.+-.-||. |-..| ||..+.+.| .++|+.
T Consensus 256 lgepPgregYPg~vF~~~srLlERAg~~~g~GSITalpiV~t~~dDis~pIp-dnv~sItDGqIvLsr~L----~~~G~~ 330 (507)
T PRK07165 256 TNKPVGKEAFPGDMFFAHSKLLERAGKFKNRKTITALPILQTVDNDITSLIS-SNIISITDGQIVTSSDL----FASGKL 330 (507)
T ss_pred ccCCCCccCCCchHHHHhHHHHHhccCCCCCCceEEEEEEECCCCCCCCcch-hhhccccCeEEEEcHHH----HhCCCC
Confidence 12 227899999999999988877765565666654322222222221 11222 776655544 467776
Q ss_pred e
Q 011047 313 P 313 (494)
Q Consensus 313 v 313 (494)
|
T Consensus 331 P 331 (507)
T PRK07165 331 P 331 (507)
T ss_pred C
Confidence 5
No 55
>KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism]
Probab=29.08 E-value=89 Score=33.93 Aligned_cols=163 Identities=15% Similarity=0.220 Sum_probs=102.6
Q ss_pred ccCCCCCH-----HHHHHHCCCCChhHHHHhHHHhhhcCCCCCCCChhhHhhhccc-----cCCCCcc-CCHHHHHHHHH
Q 011047 126 WDISDMNL-----ADAMARARVFDIDLQKQLRPYMESMVPLPGIYDPDFIAANQGS-----RANNVIK-GTKKEQMLQII 194 (494)
Q Consensus 126 wDI~~~~l-----~ea~~~a~Vl~~~l~~~v~~~L~~i~p~p~v~~~~fia~nq~~-----ra~nv~~-gt~~e~ve~ir 194 (494)
||.-+.-- +=.++.-|.-.+.+.+.|.+.-+.+.-+..+||.|-.++-.+- --+-|.+ .|-.|++|...
T Consensus 54 wD~eGk~ylDflsaysaVnqGhchpki~~aLqeq~~kLtlssrafYnd~~~~f~~~vt~lf~~~kvlpmnTGaEa~Eta~ 133 (427)
T KOG1402|consen 54 WDPEGKEYLDFLSAYSAVNQGHCHPKIIKALQEQADKLTLSSRAFYNDVLGEFAEYVTKLFGYDKVLPMNTGAEAVETAC 133 (427)
T ss_pred ECCCccchhhhhhhhhhcccCCCCHHHHHHHHHHHhHhhhhhHHHhhhhHHHHHHHHHHhcCcceeeecccchhHHHHHH
Confidence 88777553 3345677888899999999998888888888887655433210 0112222 25689999999
Q ss_pred HHHHHHHHhcC--C-CeEEEEEc-------------cCCcc-----cccccCCc-----cccHHHHHHhhhcCCCCCChh
Q 011047 195 KDIREFKEKNK--V-DRVVVLWT-------------ANTER-----YSNVIVGL-----NDTVENLLASLDKNEAEISPS 248 (494)
Q Consensus 195 ~DIr~Fk~~~~--l-d~vVVlw~-------------AsTE~-----~~~~~~~~-----~~t~~~l~~al~~n~~~i~aS 248 (494)
+=+|.|--+.+ . |+.++|-+ +||.+ |-+..|++ +..+++|+.+++. +.+.+=
T Consensus 134 KLaR~wgy~~K~ip~nka~il~~~~nFhGrT~~ais~s~d~ds~~~fgp~~P~~~~~v~Y~d~eale~~l~~--~~vaaF 211 (427)
T KOG1402|consen 134 KLARKWGYRKKNIPKNKAKILSAENNFHGRTLGAISLSTDPDSWDGFGPFLPGVVDKVPYGDAEALEVALKS--PNVAAF 211 (427)
T ss_pred HHHHHHHHhhccCCccceeEEEecccccCceeeeEEecCCcchhhccCCCCCCcceeeccCCHHHHHHHhcC--CCeeEE
Confidence 88998844333 3 45444433 34544 55555552 5689999999987 222110
Q ss_pred HHHHHHHHhcCCCeecCCCCCCCchhHHHHHHHhCCccccCCCCCCc
Q 011047 249 TLYAIACVLENIPFINGSPQNTFVPGLIDLAIRRNCLIGGDDFKSGQ 295 (494)
Q Consensus 249 ~~YA~AAl~aG~~fINgtP~~t~ipal~elae~~gvpi~GdD~KSGq 295 (494)
+ ..-|. |-+=| -.|.....++..|||.+.++.+.-|.+.||=
T Consensus 212 i---vEPIQ-GEaGV-vvP~~GYL~~vreLCtkynvl~I~DEvQTGl 253 (427)
T KOG1402|consen 212 I---VEPIQ-GEAGV-VVPPPGYLKKVRELCTKYNVLLIADEVQTGL 253 (427)
T ss_pred E---eeccc-cccce-EeCCchhHHHHHHHHHhhcEEEEehhhhhcc
Confidence 0 00011 11111 2343345788999999999999999998853
No 56
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.05 E-value=2.5e+02 Score=29.22 Aligned_cols=103 Identities=15% Similarity=0.215 Sum_probs=64.0
Q ss_pred HHHHHHHhcCCCeEEEEEccCCcccccccCCccccHHHHHHhhhcC-C-CCCChhHHHHHHHHhc-CCCeecCCCCCCCc
Q 011047 196 DIREFKEKNKVDRVVVLWTANTERYSNVIVGLNDTVENLLASLDKN-E-AEISPSTLYAIACVLE-NIPFINGSPQNTFV 272 (494)
Q Consensus 196 DIr~Fk~~~~ld~vVVlw~AsTE~~~~~~~~~~~t~~~l~~al~~n-~-~~i~aS~~YA~AAl~a-G~~fINgtP~~t~i 272 (494)
-|++.-+...+|-++|- .+-|.|-+...+.++|.-. | +-++|-.+ ..+.. .-.|+=|||.
T Consensus 81 ~I~~lN~d~~V~GIlvq----------lPLP~~~~~~~i~~~I~p~KDVDGl~~~n~---g~l~~g~~~~~PcTp~---- 143 (278)
T PRK14172 81 EIEELNKDNNVHGIMLQ----------LPLPKHLDEKKITNKIDANKDIDCLTFISV---GKFYKGEKCFLPCTPN---- 143 (278)
T ss_pred HHHHHhCCCCCCeEEEc----------CCCCCCCCHHHHHhccCcccccCccCHhhH---HHHhCCCCCCcCCCHH----
Confidence 33555555556666643 1123466777788887642 1 22444332 12212 2336767775
Q ss_pred hhHHHHHHHhCCccccCCCCC--CcchhHHHHHHHHHhcCCceeEE
Q 011047 273 PGLIDLAIRRNCLIGGDDFKS--GQTKMKSVLVDFLVGAGIKPTSI 316 (494)
Q Consensus 273 pal~elae~~gvpi~GdD~KS--GqT~lks~La~~l~~RGlkv~s~ 316 (494)
|..++.+..++++.|++.-= .-..+=.=|+-||..+|-.|...
T Consensus 144 -av~~lL~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~c 188 (278)
T PRK14172 144 -SVITLIKSLNIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTIC 188 (278)
T ss_pred -HHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEe
Confidence 89999999999999988532 33457788999999999766443
No 57
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=28.43 E-value=1.3e+02 Score=28.44 Aligned_cols=67 Identities=13% Similarity=0.071 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEEccCCcccccccCCccccHHHHHHhhhcCCCCCChhHHHHHHHHhcCCCeecCCC
Q 011047 191 LQIIKDIREFKEKNKVDRVVVLWTANTERYSNVIVGLNDTVENLLASLDKNEAEISPSTLYAIACVLENIPFINGSP 267 (494)
Q Consensus 191 e~ir~DIr~Fk~~~~ld~vVVlw~AsTE~~~~~~~~~~~t~~~l~~al~~n~~~i~aS~~YA~AAl~aG~~fINgtP 267 (494)
++=++++++.|+ .|+|.||+.|++-+....-... . .... .. .+...+=...-.||-+.|.-+.=|.+
T Consensus 20 ~~W~~~~~~m~~-~GidtlIlq~~~~~~~~~yps~-~--~~~~----~~--~~~~d~l~~~L~~A~~~Gmkv~~Gl~ 86 (166)
T PF14488_consen 20 AQWREEFRAMKA-IGIDTLILQWTGYGGFAFYPSK-L--SPGG----FY--MPPVDLLEMILDAADKYGMKVFVGLY 86 (166)
T ss_pred HHHHHHHHHHHH-cCCcEEEEEEeecCCcccCCcc-c--cCcc----cc--CCcccHHHHHHHHHHHcCCEEEEeCC
Confidence 456778888887 9999999999998775431111 1 0000 00 12234445555667788988887777
No 58
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.62 E-value=3.4e+02 Score=28.40 Aligned_cols=103 Identities=14% Similarity=0.186 Sum_probs=64.5
Q ss_pred HHHHHHhcCCCeEEEEEccCCcccccccCCccccHHHHHHhhhcC-C-CCCChhHHHHHHHHhcCCCeecCCCCCCCchh
Q 011047 197 IREFKEKNKVDRVVVLWTANTERYSNVIVGLNDTVENLLASLDKN-E-AEISPSTLYAIACVLENIPFINGSPQNTFVPG 274 (494)
Q Consensus 197 Ir~Fk~~~~ld~vVVlw~AsTE~~~~~~~~~~~t~~~l~~al~~n-~-~~i~aS~~YA~AAl~aG~~fINgtP~~t~ipa 274 (494)
|++.-+...+|-++|- .+-|.|-+...+.++|.-. | +-++|-.+--.. ...-.|+=|||. |
T Consensus 82 i~~lN~d~~V~GIlvq----------~Plp~~~~~~~i~~~I~p~KDVDGl~~~n~g~l~--~~~~~~~PcTp~-----a 144 (296)
T PRK14188 82 IARLNADPAIHGILVQ----------LPLPKHLDSEAVIQAIDPEKDVDGLHVVNAGRLA--TGETALVPCTPL-----G 144 (296)
T ss_pred HHHHhCCCCCcEEEEe----------CCCCCCCCHHHHHhccCcccccccCChhhHHHHh--CCCCCCcCCCHH-----H
Confidence 3444444555555543 1113455666777777532 1 225554332221 112346666665 8
Q ss_pred HHHHHHHhCCccccCCCCC-C-cchhHHHHHHHHHhcCCceeEE
Q 011047 275 LIDLAIRRNCLIGGDDFKS-G-QTKMKSVLVDFLVGAGIKPTSI 316 (494)
Q Consensus 275 l~elae~~gvpi~GdD~KS-G-qT~lks~La~~l~~RGlkv~s~ 316 (494)
..++.+..++++.|+..-= | --.|=.-+|.+|..+|..|..|
T Consensus 145 i~~ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~ 188 (296)
T PRK14188 145 CMMLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIA 188 (296)
T ss_pred HHHHHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEE
Confidence 9999999999988887533 5 4467888999999999999888
No 59
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=26.75 E-value=30 Score=38.26 Aligned_cols=80 Identities=28% Similarity=0.398 Sum_probs=51.9
Q ss_pred hhcCCCCCChhHHHHHHHHhcCCCeecCCCCCCCchhHHHHHH-HhCCccccCCCCCCcchhHHHHHHHHHhcCCceeEE
Q 011047 238 LDKNEAEISPSTLYAIACVLENIPFINGSPQNTFVPGLIDLAI-RRNCLIGGDDFKSGQTKMKSVLVDFLVGAGIKPTSI 316 (494)
Q Consensus 238 l~~n~~~i~aS~~YA~AAl~aG~~fINgtP~~t~ipal~elae-~~gvpi~GdD~KSGqT~lks~La~~l~~RGlkv~s~ 316 (494)
++++++|+ .+|.+.|+|++...= -|.|+-+ +.++-|+|..+||- ..|.|+-.|.+.|+.|.-.
T Consensus 76 i~~~NpEi-------~~A~e~~ipi~~r~e------~Laelm~~~~~iaVaGTHGKTT---TTsmla~vl~~~gldPtf~ 139 (459)
T COG0773 76 IKEDNPEI-------VAALERGIPVISRAE------MLAELMRFRTSIAVAGTHGKTT---TTSMLAWVLEAAGLDPTFL 139 (459)
T ss_pred cCCCCHHH-------HHHHHcCCCeEcHHH------HHHHHHhCCeeEEEeCCCCchh---HHHHHHHHHHhCCCCCEEE
Confidence 34455665 456677888884321 3444443 67888999887764 4567889999999999877
Q ss_pred Ee--------eeecCCccccCCCCc
Q 011047 317 VS--------YNHLGNNDGMNLSAP 333 (494)
Q Consensus 317 ~s--------~NilGN~Dg~nL~~p 333 (494)
.. -..+|..|+.+-...
T Consensus 140 iGG~~~~~g~na~~g~~~~fV~EAD 164 (459)
T COG0773 140 IGGILKNFGTNARLGSGDYFVAEAD 164 (459)
T ss_pred ECcccccCCcccccCCCceEEEEec
Confidence 76 223455555555433
No 60
>PF13991 BssS: BssS protein family
Probab=26.45 E-value=21 Score=30.31 Aligned_cols=15 Identities=40% Similarity=0.818 Sum_probs=12.7
Q ss_pred ecccCCCCCHHHHHH
Q 011047 124 GGWDISDMNLADAMA 138 (494)
Q Consensus 124 GGwDI~~~~l~ea~~ 138 (494)
-||||++.+-++||.
T Consensus 4 ~GW~i~pv~~~dal~ 18 (73)
T PF13991_consen 4 TGWDIGPVDSYDALM 18 (73)
T ss_pred ccceeccccccceeE
Confidence 479999999888776
No 61
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=26.39 E-value=98 Score=33.69 Aligned_cols=77 Identities=18% Similarity=0.151 Sum_probs=45.6
Q ss_pred cCCCeEEEEEccCCcccccccCCccccHHHHHHhhhcCCCCCC------hhHHHHHHHHhcCCCee---cC------C--
Q 011047 204 NKVDRVVVLWTANTERYSNVIVGLNDTVENLLASLDKNEAEIS------PSTLYAIACVLENIPFI---NG------S-- 266 (494)
Q Consensus 204 ~~ld~vVVlw~AsTE~~~~~~~~~~~t~~~l~~al~~n~~~i~------aS~~YA~AAl~aG~~fI---Ng------t-- 266 (494)
.|+|- |+|.+|.- ......++.+.|++..++++ .+.-=|.+++++|+.|| ++ +
T Consensus 235 aG~d~-I~vd~a~g---------~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~aGad~i~vg~g~G~~~~t~~ 304 (450)
T TIGR01302 235 AGVDV-IVIDSSHG---------HSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDAGADGLRVGIGPGSICTTRI 304 (450)
T ss_pred hCCCE-EEEECCCC---------cHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHhCCCEEEECCCCCcCCccce
Confidence 57774 55666641 11234445555555433322 34455777888999999 32 2
Q ss_pred ------CCCCCchhHHHHHHHhCCccccCC
Q 011047 267 ------PQNTFVPGLIDLAIRRNCLIGGDD 290 (494)
Q Consensus 267 ------P~~t~ipal~elae~~gvpi~GdD 290 (494)
|+.+.++.+.+.+++.++|+.-|=
T Consensus 305 ~~~~g~p~~~~i~~~~~~~~~~~vpviadG 334 (450)
T TIGR01302 305 VAGVGVPQITAVYDVAEYAAQSGIPVIADG 334 (450)
T ss_pred ecCCCccHHHHHHHHHHHHhhcCCeEEEeC
Confidence 333334567777788899988765
No 62
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=26.32 E-value=2e+02 Score=30.50 Aligned_cols=40 Identities=20% Similarity=0.316 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEEccCCcccccccCCccccHHHHHHhh
Q 011047 190 MLQIIKDIREFKEKNKVDRVVVLWTANTERYSNVIVGLNDTVENLLASL 238 (494)
Q Consensus 190 ve~ir~DIr~Fk~~~~ld~vVVlw~AsTE~~~~~~~~~~~t~~~l~~al 238 (494)
++.|.+.+++|.++.|-. |. + +|+ +++|+||+.+++++..
T Consensus 238 l~~l~~~~~~y~~~~gr~-I~-i------ey~-LIpGvNDs~e~a~~La 277 (345)
T PRK14457 238 IENLLEDCRHYVAITGRR-VS-F------EYI-LLGGVNDLPEHAEELA 277 (345)
T ss_pred HHHHHHHHHHHHHHhCCE-EE-E------EEE-EECCcCCCHHHHHHHH
Confidence 667777888887766543 22 2 455 7889999999877554
No 63
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=26.28 E-value=2.1e+02 Score=28.72 Aligned_cols=107 Identities=15% Similarity=0.031 Sum_probs=60.5
Q ss_pred eEEEEEcc-CCcccccccCCccccHHHHHHhhhcCCCC---CChh-HHHHH-HHHhcCCCeecCCCCC-CCchhHHHHHH
Q 011047 208 RVVVLWTA-NTERYSNVIVGLNDTVENLLASLDKNEAE---ISPS-TLYAI-ACVLENIPFINGSPQN-TFVPGLIDLAI 280 (494)
Q Consensus 208 ~vVVlw~A-sTE~~~~~~~~~~~t~~~l~~al~~n~~~---i~aS-~~YA~-AAl~aG~~fINgtP~~-t~ipal~elae 280 (494)
||.||--. |+|+-..+ .|..++.++|++..-+ +... .+... ..+..---.+|..+.. .....+..+++
T Consensus 2 ~v~v~~gg~s~e~~~sl-----~s~~~i~~al~~~g~~~~~i~~~~~~~~~~~~~~~~D~v~~~~~g~~ge~~~~~~~le 76 (299)
T PRK14571 2 RVALLMGGVSREREISL-----RSGERVKKALEKLGYEVTVFDVDEDFLKKVDQLKSFDVVFNVLHGTFGEDGTLQAILD 76 (299)
T ss_pred eEEEEeCCCCCCccchH-----HHHHHHHHHHHHcCCeEEEEccCchHHHHhhhccCCCEEEEeCCCCCCCccHHHHHHH
Confidence 34444443 88987632 4888888888764322 2212 12221 1222223345666652 12456788888
Q ss_pred HhCCccccCCCCCCcchhHHHHHHHHHhcCCceeEEEee
Q 011047 281 RRNCLIGGDDFKSGQTKMKSVLVDFLVGAGIKPTSIVSY 319 (494)
Q Consensus 281 ~~gvpi~GdD~KSGqT~lks~La~~l~~RGlkv~s~~s~ 319 (494)
..|+|+.|.|..+=+.-....+...+...|+.+-.|...
T Consensus 77 ~~gip~~G~~~~a~~i~~DK~~~k~~l~~~ip~p~~~~~ 115 (299)
T PRK14571 77 FLGIRYTGSDAFSSMICFDKLLTYRFLKGTVEIPDFVEI 115 (299)
T ss_pred HcCCCccCCCHHHHHHHcCHHHHHHHHhcCCCCCCEEEE
Confidence 999999999988733333233333333468887776654
No 64
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=26.16 E-value=2.3e+02 Score=30.11 Aligned_cols=93 Identities=18% Similarity=0.216 Sum_probs=54.0
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCeEEEEEccCCcccccccCCccccHHHHHHhhhcCCCCCChhHHHHHHHHhcCCCeec
Q 011047 185 TKKEQMLQIIKDIREFKEKNKVDRVVVLWTANTERYSNVIVGLNDTVENLLASLDKNEAEISPSTLYAIACVLENIPFIN 264 (494)
Q Consensus 185 t~~e~ve~ir~DIr~Fk~~~~ld~vVVlw~AsTE~~~~~~~~~~~t~~~l~~al~~n~~~i~aS~~YA~AAl~aG~~fIN 264 (494)
+++-.++.+.+-+++|.++++-. |.+ +|+ ..+++||+.+++++-.+-= ..++ ....||
T Consensus 230 ~~~~~l~~l~~~~~~~~~~~g~~-V~i-------eyv-LIpGvNDs~e~a~~La~~l-~~l~------------~~~~Vn 287 (348)
T PRK14467 230 SKTNTLEELMEVLKQYPLPPGRR-IML-------EYV-LIKGVNDSPEDALRLAQLI-GKNK------------KKFKVN 287 (348)
T ss_pred ccccCHHHHHHHHHHHHHhcCCe-EEE-------EEE-EECCccCCHHHHHHHHHHH-hcCC------------CceEEE
Confidence 45556777888888888777643 321 445 6779999998876543310 0010 244688
Q ss_pred CCCCCCC------------chhHHHHHHHhCCcc-----ccCCCCC--CcchhH
Q 011047 265 GSPQNTF------------VPGLIDLAIRRNCLI-----GGDDFKS--GQTKMK 299 (494)
Q Consensus 265 gtP~~t~------------ipal~elae~~gvpi-----~GdD~KS--GqT~lk 299 (494)
.+|=|+. +..+.+.++++|+++ .|+|+.. ||-..+
T Consensus 288 LIPynp~~~~~~~~ps~e~i~~f~~~L~~~gi~v~vR~~~G~di~aaCGqL~~~ 341 (348)
T PRK14467 288 LIPFNPDPELPYERPELERVYKFQKILWDNGISTFVRWSKGVDIFGACGQLRKK 341 (348)
T ss_pred EecCCCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCcchhhcccchhHh
Confidence 7775421 123445555667766 4666655 665443
No 65
>TIGR01698 PUNP purine nucleotide phosphorylase. methylthioadenosine.
Probab=25.97 E-value=2.1e+02 Score=29.00 Aligned_cols=78 Identities=15% Similarity=0.189 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEEccCCcccccccCCccccHHHHHHhhhcCCCCCChhHHHHHHHHhcCCCeecCCCCC
Q 011047 190 MLQIIKDIREFKEKNKVDRVVVLWTANTERYSNVIVGLNDTVENLLASLDKNEAEISPSTLYAIACVLENIPFINGSPQN 269 (494)
Q Consensus 190 ve~ir~DIr~Fk~~~~ld~vVVlw~AsTE~~~~~~~~~~~t~~~l~~al~~n~~~i~aS~~YA~AAl~aG~~fINgtP~~ 269 (494)
++.+|..|+-||+ .|++++|+.|.+-.=... ..+|----.+++..--.. +|. .|..|+..++
T Consensus 68 ~~~v~~~i~al~~-lGv~~ii~tna~Gsl~~~-~~pGdlv~~~D~I~~t~~-----~pl---------~g~~~~d~~~-- 129 (237)
T TIGR01698 68 ARAVVHPVRTARA-TGAETLILTNAAGGLRQD-WGPGTPVLISDHINLTAR-----SPL---------IGPRFVDLTD-- 129 (237)
T ss_pred HHHhHHHHHHHHH-cCCCEEEEEcccccCCCC-CCCCCEEeechhcccCCC-----CCC---------CCCccCCCCc--
Confidence 4468999999998 899999999887221111 222221122333222111 111 3567777765
Q ss_pred CCchhHHHHHHHhCCc
Q 011047 270 TFVPGLIDLAIRRNCL 285 (494)
Q Consensus 270 t~ipal~elae~~gvp 285 (494)
.+.|.+.+.|++.+++
T Consensus 130 ~yd~~Lr~~a~~~~~~ 145 (237)
T TIGR01698 130 AYSPRLRELAERVDPP 145 (237)
T ss_pred ccCHHHHHHHHHcCCC
Confidence 5778888887776654
No 66
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=25.32 E-value=83 Score=34.06 Aligned_cols=82 Identities=11% Similarity=-0.042 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEEccCCcccccccCCccccHHHHHHhhhcC-CCCCChhHHHHHHHHhcCCCeecCC
Q 011047 188 EQMLQIIKDIREFKEKNKVDRVVVLWTANTERYSNVIVGLNDTVENLLASLDKN-EAEISPSTLYAIACVLENIPFINGS 266 (494)
Q Consensus 188 e~ve~ir~DIr~Fk~~~~ld~vVVlw~AsTE~~~~~~~~~~~t~~~l~~al~~n-~~~i~aS~~YA~AAl~aG~~fINgt 266 (494)
+-++.+. ++|++++++ .||.++|..-.-+. ...|.....+++.+.+-.. +++- ..-.-||..
T Consensus 135 dDi~~v~---~~~~~~~~~-pvi~v~t~gf~g~~-~~~G~~~a~~al~~~l~~~~~~~~------------~~~~~VNii 197 (443)
T TIGR01862 135 DDIEAVA---KEVSKEIGK-DVVAVNCPGFAGVS-QSKGHHIANIAVINDKVGTREKEI------------TTEYDVNII 197 (443)
T ss_pred cCHHHHH---HHHHHhcCC-CEEEEecCCccCCc-cchHHHHHHHHHHHHHhCCCCccc------------CCCCeEEEE
Confidence 3444444 667776763 56655544332221 1223444455555444321 1110 012347766
Q ss_pred CCCCC---chhHHHHHHHhCCcc
Q 011047 267 PQNTF---VPGLIDLAIRRNCLI 286 (494)
Q Consensus 267 P~~t~---ipal~elae~~gvpi 286 (494)
+...+ +-.+.++.++.|+.+
T Consensus 198 g~~~~~~d~~el~~lL~~~Gl~v 220 (443)
T TIGR01862 198 GEYNIGGDAWVMRIYLEEMGIQV 220 (443)
T ss_pred ccCcCcccHHHHHHHHHHcCCeE
Confidence 64221 345566667777655
No 67
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=25.12 E-value=84 Score=33.66 Aligned_cols=122 Identities=17% Similarity=0.205 Sum_probs=0.0
Q ss_pred CCCCCeeeecccCCCCCHHHHHHHCCCCChhHHHHhHHHhhhcCCCCCCCChhhHhhhccccCCCCccCCHHHHHHHHHH
Q 011047 116 VNPDDIVFGGWDISDMNLADAMARARVFDIDLQKQLRPYMESMVPLPGIYDPDFIAANQGSRANNVIKGTKKEQMLQIIK 195 (494)
Q Consensus 116 ~~~~dlVfGGwDI~~~~l~ea~~~a~Vl~~~l~~~v~~~L~~i~p~p~v~~~~fia~nq~~ra~nv~~gt~~e~ve~ir~ 195 (494)
.+-.|+||||.| +|.+++.+ +.++.+|.+=.+ ...|.++.-.+-++.+.
T Consensus 64 l~E~dvVfGg~~----kL~~aI~~-------~~~~~~P~~I~V-------------------~ttC~~~iIGdDi~~v~- 112 (426)
T cd01972 64 LTEKDVVFGGEK----KLEDTIKE-------AYSRYKPKAIFV-------------------ATSCATGIIGDDVESVV- 112 (426)
T ss_pred CCccceecchHH----HHHHHHHH-------HHHhCCCCEEEE-------------------ECCChHHHhccCHHHHH-
Q ss_pred HHHHHHHhcCCCeEEEEEccCCcccccccCCccccHHHHHHhhhcC--CCCCChhHHHHHHHHhcCCCeecCCCCCCC--
Q 011047 196 DIREFKEKNKVDRVVVLWTANTERYSNVIVGLNDTVENLLASLDKN--EAEISPSTLYAIACVLENIPFINGSPQNTF-- 271 (494)
Q Consensus 196 DIr~Fk~~~~ld~vVVlw~AsTE~~~~~~~~~~~t~~~l~~al~~n--~~~i~aS~~YA~AAl~aG~~fINgtP~~t~-- 271 (494)
++++++.+. .||.++|..-.-.. ...|.+...+++.+.+... .+..+.+ ||..+....
T Consensus 113 --~~~~~~~~~-pvi~v~t~gf~g~~-~~~G~~~a~~al~~~~~~~~~~~~~~~~--------------VNliG~~~~~~ 174 (426)
T cd01972 113 --EELEDEIGI-PVVALHCEGFKGKH-WRSGFDAAFHGILRHLVPPQDPTKQEDS--------------VNIIGLWGGPE 174 (426)
T ss_pred --HHHHHhhCC-CEEEEeCCccCCcc-HhHHHHHHHHHHHHHhcCCCCCCCCCCC--------------EEEEccCCCcc
Q ss_pred ------chhHHHHHHHhCCcc
Q 011047 272 ------VPGLIDLAIRRNCLI 286 (494)
Q Consensus 272 ------ipal~elae~~gvpi 286 (494)
+..+.++.++.|+.+
T Consensus 175 ~~~~~d~~ei~~lL~~~Gi~v 195 (426)
T cd01972 175 RTEQEDVDEFKRLLNELGLRV 195 (426)
T ss_pred ccccccHHHHHHHHHHcCCeE
No 68
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=24.75 E-value=4.8e+02 Score=26.60 Aligned_cols=127 Identities=11% Similarity=0.046 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeE-EEEEccCCcccccccCCccccHHHHHHhhhcCC-CCCChhHHHHHHHHhcCCCeec
Q 011047 187 KEQMLQIIKDIREFKEKNKVDRV-VVLWTANTERYSNVIVGLNDTVENLLASLDKNE-AEISPSTLYAIACVLENIPFIN 264 (494)
Q Consensus 187 ~e~ve~ir~DIr~Fk~~~~ld~v-VVlw~AsTE~~~~~~~~~~~t~~~l~~al~~n~-~~i~aS~~YA~AAl~aG~~fIN 264 (494)
-+.+.++.+-|++.++..++... ||+|-... ....+.+++.....- ..|+-+..++.|. ..|-|.+.
T Consensus 153 l~~~~~l~~~i~~~~~~~~l~~~gvv~n~~~~----------~~~~~~~~~~~~~~vl~~Ip~~~~v~~A~-~~g~pv~~ 221 (290)
T CHL00072 153 LFAANRIAASVREKARTHPLRLAGLVGNRTSK----------RDLIDKYVEACPMPVLEVLPLIEDIRVSR-VKGKTLFE 221 (290)
T ss_pred HHHHHHHHHHHHHHhccCCCceEEEEEeCCCc----------hhHHHHHHHHcCCceEEECCCChHHHHHH-hCCCceEE
Confidence 36677787778887765666654 56654321 123333443322110 1589999999996 78999998
Q ss_pred CCCCCC----CchhHHHHHHHhCCccccCCCCCCcchhH-HHHHHHHHhcCCceeEEEeeeecCCccccCCCC
Q 011047 265 GSPQNT----FVPGLIDLAIRRNCLIGGDDFKSGQTKMK-SVLVDFLVGAGIKPTSIVSYNHLGNNDGMNLSA 332 (494)
Q Consensus 265 gtP~~t----~ipal~elae~~gvpi~GdD~KSGqT~lk-s~La~~l~~RGlkv~s~~s~NilGN~Dg~nL~~ 332 (494)
..|... ...++.++|++- .+.-.+.=-|.+- .-|-.|+.+-|+.+.+ |-+--||-.||.|
T Consensus 222 ~~p~s~~~~~~a~~y~~La~el----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 286 (290)
T CHL00072 222 MVESEPSLNYVCDYYLNIADQL----LSQPEGVVPKEVPDRELFSLLSDFYLNPIG----NEGQKNDQENLLD 286 (290)
T ss_pred eCCCCcchhHHHHHHHHHHHHH----HhCCCCcCCCCCCHHHHHHHHHHhccCCCc----ccccccccccccc
Confidence 888633 235677888763 2221111111222 3677788888887754 4444566666654
No 69
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.63 E-value=4.1e+02 Score=27.75 Aligned_cols=84 Identities=14% Similarity=0.089 Sum_probs=56.0
Q ss_pred ccccHHHHHHhhhcC--CCCCChhHHHHHHHHhcC-CCeecCCCCCCCchhHHHHHHHhCCccccCCCCC-Ccch-hHHH
Q 011047 227 LNDTVENLLASLDKN--EAEISPSTLYAIACVLEN-IPFINGSPQNTFVPGLIDLAIRRNCLIGGDDFKS-GQTK-MKSV 301 (494)
Q Consensus 227 ~~~t~~~l~~al~~n--~~~i~aS~~YA~AAl~aG-~~fINgtP~~t~ipal~elae~~gvpi~GdD~KS-GqT~-lks~ 301 (494)
.|-+...+.++|.-. -+-++|-.+-- +..| -.|+=|||. |..++.+..++++.|+..-= |... +=.-
T Consensus 103 ~~~~~~~i~~~I~p~KDVDGl~~~n~g~---l~~~~~~~~PcTp~-----av~~ll~~~~i~l~Gk~vvViGrs~iVG~P 174 (285)
T PRK10792 103 AHIDNVKVLERIHPDKDVDGFHPYNVGR---LAQRIPLLRPCTPR-----GIMTLLERYGIDTYGLNAVVVGASNIVGRP 174 (285)
T ss_pred CCCCHHHHHhccCcccccCccChhhHhH---HhCCCCCCCCCCHH-----HHHHHHHHcCCCCCCCEEEEECCCcccHHH
Confidence 455667777777532 12244433222 1122 236767775 89999999999999887533 6665 8889
Q ss_pred HHHHHHhcCCceeEEEe
Q 011047 302 LVDFLVGAGIKPTSIVS 318 (494)
Q Consensus 302 La~~l~~RGlkv~s~~s 318 (494)
|+-+|..+|-.|...-+
T Consensus 175 la~lL~~~~atVtv~hs 191 (285)
T PRK10792 175 MSLELLLAGCTVTVCHR 191 (285)
T ss_pred HHHHHHHCCCeEEEEEC
Confidence 99999999988876543
No 70
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.61 E-value=2.5e+02 Score=29.42 Aligned_cols=83 Identities=11% Similarity=0.082 Sum_probs=54.1
Q ss_pred ccccHHHHHHhhhcC--CCCCChhHHHHHHHHhcCCCeecCCCCCCCchhHHHHHHHhCCccccCCCCC--CcchhHHHH
Q 011047 227 LNDTVENLLASLDKN--EAEISPSTLYAIACVLENIPFINGSPQNTFVPGLIDLAIRRNCLIGGDDFKS--GQTKMKSVL 302 (494)
Q Consensus 227 ~~~t~~~l~~al~~n--~~~i~aS~~YA~AAl~aG~~fINgtP~~t~ipal~elae~~gvpi~GdD~KS--GqT~lks~L 302 (494)
.|-+...+.++|.-. -+-++|-.+-.... ...-.|+=|||. |..++.+..++++.|++.-= .-..+=+=|
T Consensus 102 ~~id~~~i~~~I~p~KDVDGl~~~N~g~l~~-g~~~~~~PcTp~-----av~~lL~~y~i~l~GK~vvViGrS~iVGkPl 175 (288)
T PRK14171 102 SSIDKNKILSAVSPSKDIDGFHPLNVGYLHS-GISQGFIPCTAL-----GCLAVIKKYEPNLTGKNVVIIGRSNIVGKPL 175 (288)
T ss_pred CCCCHHHHHhccCcccccccCCccchhhhhc-CCCCCCcCCCHH-----HHHHHHHHhCCCCCCCEEEEECCCCcchHHH
Confidence 455667777777542 12255543333221 111457777775 89999999999999998422 334577889
Q ss_pred HHHHHhcCCceeE
Q 011047 303 VDFLVGAGIKPTS 315 (494)
Q Consensus 303 a~~l~~RGlkv~s 315 (494)
+-+|..+|-.|..
T Consensus 176 a~lL~~~~ATVti 188 (288)
T PRK14171 176 SALLLKENCSVTI 188 (288)
T ss_pred HHHHHHCCCEEEE
Confidence 9999999977753
No 71
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.22 E-value=3.5e+02 Score=28.25 Aligned_cols=81 Identities=16% Similarity=0.200 Sum_probs=53.5
Q ss_pred ccccHHHHHHhhhcC-C-CCCChhHHHHHHHHhcC--CCeecCCCCCCCchhHHHHHHHhCCccccCCCCC-C-cchhHH
Q 011047 227 LNDTVENLLASLDKN-E-AEISPSTLYAIACVLEN--IPFINGSPQNTFVPGLIDLAIRRNCLIGGDDFKS-G-QTKMKS 300 (494)
Q Consensus 227 ~~~t~~~l~~al~~n-~-~~i~aS~~YA~AAl~aG--~~fINgtP~~t~ipal~elae~~gvpi~GdD~KS-G-qT~lks 300 (494)
.|-+.+.+.++|.-. | +-++|-.+- -+-.| ..|+=|||. |..++.+..++++.|++.-= | -..+=+
T Consensus 100 ~~i~~~~i~~~I~p~KDVDGl~~~N~g---~l~~g~~~~~~PcTp~-----avi~lL~~y~i~l~Gk~vvVvGrS~iVGk 171 (282)
T PRK14166 100 DHICKDLILESIISSKDVDGFHPINVG---YLNLGLESGFLPCTPL-----GVMKLLKAYEIDLEGKDAVIIGASNIVGR 171 (282)
T ss_pred CCCCHHHHHhccCcccCcccCChhhhH---HHhcCCCCCCcCCCHH-----HHHHHHHHhCCCCCCCEEEEECCCCcchH
Confidence 456777777777542 1 224443322 22223 467777776 89999999999999888432 3 334677
Q ss_pred HHHHHHHhcCCceeE
Q 011047 301 VLVDFLVGAGIKPTS 315 (494)
Q Consensus 301 ~La~~l~~RGlkv~s 315 (494)
=|+-+|..+|-.|..
T Consensus 172 Pla~lL~~~~atVt~ 186 (282)
T PRK14166 172 PMATMLLNAGATVSV 186 (282)
T ss_pred HHHHHHHHCCCEEEE
Confidence 889999999977763
No 72
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=24.07 E-value=2.6e+02 Score=30.78 Aligned_cols=171 Identities=16% Similarity=0.251 Sum_probs=97.3
Q ss_pred HCCCCChhHHHHhHHHhhhcCCCCCCCChhhHhhhcccc------CCCCccC-CHHHHHHHHHHHHHHHHHhcCCC--eE
Q 011047 139 RARVFDIDLQKQLRPYMESMVPLPGIYDPDFIAANQGSR------ANNVIKG-TKKEQMLQIIKDIREFKEKNKVD--RV 209 (494)
Q Consensus 139 ~a~Vl~~~l~~~v~~~L~~i~p~p~v~~~~fia~nq~~r------a~nv~~g-t~~e~ve~ir~DIr~Fk~~~~ld--~v 209 (494)
.=|.=.+.+.+.|+++++.+--...+|+.+..++..+.= .+.|.-. |-.|++|.-.+=.|.+.. +.+ ++
T Consensus 55 ~lGH~hP~iv~al~~Q~~kl~h~sn~~~~~~~~~la~~L~~~s~~~d~vff~NSGaEA~EaAiKlARk~~~--~~~k~~I 132 (404)
T COG4992 55 NLGHCHPALVEALKEQAEKLWHVSNLFYNEPQAELAEKLVELSPFADRVFFCNSGAEANEAALKLARKYTG--DPEKSKI 132 (404)
T ss_pred ccCCCCHHHHHHHHHHHHHhhhcccccCChHHHHHHHHHHhhCccccEEEEcCCcHHHHHHHHHHHHHHcC--CCCCcEE
Confidence 445667777777887777777777777765544433221 2333322 456777776655577764 233 34
Q ss_pred EEEE-----------ccCCcc-----cccccCCc----cccHHHHHHhhhcCCCCCChhHHHHHHHHhc---CCCeecCC
Q 011047 210 VVLW-----------TANTER-----YSNVIVGL----NDTVENLLASLDKNEAEISPSTLYAIACVLE---NIPFINGS 266 (494)
Q Consensus 210 VVlw-----------~AsTE~-----~~~~~~~~----~~t~~~l~~al~~n~~~i~aS~~YA~AAl~a---G~~fINgt 266 (494)
|... +++..+ |.+..+++ +.++++++++|.++-..| +.| |-.=|+-.
T Consensus 133 ia~~nsFHGRT~galS~t~~~ky~~~F~Pl~~g~~~vpfnDi~al~~ai~~~taAv----------ivEPIQGEgGV~~~ 202 (404)
T COG4992 133 IAFENSFHGRTLGALSATGQPKYRKGFGPLLPGFRHVPFNDIEALEAAIDEDTAAV----------IVEPIQGEGGVIPA 202 (404)
T ss_pred EEEcCCcCCccceeeeccCChhhccCCCCCCCCceecCCCCHHHHHHHhccCeEEE----------EEecccCCCCCCCC
Confidence 4321 233333 44445443 457899999997732211 111 33334444
Q ss_pred CCCCCchhHHHHHHHhCCccccCCCCCCcchhHHHHHHHHHhcCCceeEEEeeeecCC
Q 011047 267 PQNTFVPGLIDLAIRRNCLIGGDDFKSGQTKMKSVLVDFLVGAGIKPTSIVSYNHLGN 324 (494)
Q Consensus 267 P~~t~ipal~elae~~gvpi~GdD~KSGqT~lks~La~~l~~RGlkv~s~~s~NilGN 324 (494)
|. .|+.++.++|.++|+.+.=|.+.||=-.-=+..|- ..-|+.|+=+..-==|||
T Consensus 203 ~~-~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk~fA~--e~~gV~PDI~tlaK~LgG 257 (404)
T COG4992 203 PP-EFLKALRELCDEHGALLILDEVQTGLGRTGKLFAY--EHYGVEPDILTLAKALGG 257 (404)
T ss_pred CH-HHHHHHHHHHHHhCeEEEEeccccCCCccchHHHH--HHhCCCCCEEEeeccccC
Confidence 43 58899999999999999999998832211122221 122666655544444444
No 73
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=23.94 E-value=49 Score=30.99 Aligned_cols=33 Identities=33% Similarity=0.345 Sum_probs=29.8
Q ss_pred hCCccccCCCCCCcchhHHHHHHHHHhcCCcee
Q 011047 282 RNCLIGGDDFKSGQTKMKSVLVDFLVGAGIKPT 314 (494)
Q Consensus 282 ~gvpi~GdD~KSGqT~lks~La~~l~~RGlkv~ 314 (494)
++++|.|.|--+|-|.+-..|+..|..+|.++-
T Consensus 1 r~i~I~~t~t~vGKT~vslgL~~~l~~~g~~v~ 33 (199)
T PF13500_consen 1 RTIFITGTDTGVGKTVVSLGLARALRRRGIKVG 33 (199)
T ss_dssp -EEEEEESSSSSSHHHHHHHHHHHHHHTTSEEE
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHHhCCCceE
Confidence 357899999999999999999999999999984
No 74
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=23.57 E-value=2.9e+02 Score=29.39 Aligned_cols=39 Identities=26% Similarity=0.474 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEEccCCcccccccCCccccHHHHHHh
Q 011047 190 MLQIIKDIREFKEKNKVDRVVVLWTANTERYSNVIVGLNDTVENLLAS 237 (494)
Q Consensus 190 ve~ir~DIr~Fk~~~~ld~vVVlw~AsTE~~~~~~~~~~~t~~~l~~a 237 (494)
++.|.+.+++|.++.+. +|. + .|. ..+++||+.+++++.
T Consensus 241 l~~ll~~l~~~~~~~g~-~Vt-i------eyv-LI~GvNDs~e~a~~L 279 (355)
T TIGR00048 241 IETLLAAVRRYLNKTGR-RVT-F------EYV-LLDGVNDQVEHAEEL 279 (355)
T ss_pred HHHHHHHHHHHHHHhCC-EEE-E------EEE-EECCCCCCHHHHHHH
Confidence 67788888888777773 332 2 233 677899988876654
No 75
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=22.93 E-value=58 Score=36.44 Aligned_cols=88 Identities=15% Similarity=0.223 Sum_probs=47.0
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCeEEEEEccCCcccccccC-C-------------------ccccHHHHHHhhh----
Q 011047 184 GTKKEQMLQIIKDIREFKEKNKVDRVVVLWTANTERYSNVIV-G-------------------LNDTVENLLASLD---- 239 (494)
Q Consensus 184 gt~~e~ve~ir~DIr~Fk~~~~ld~vVVlw~AsTE~~~~~~~-~-------------------~~~t~~~l~~al~---- 239 (494)
|-+..-+.++. +++++...+++.|||...+.|++....- + +.|+.-.+-.|..
T Consensus 199 Ger~rev~e~~---~~l~~~~~l~~tvvV~atsd~~~~~r~~ap~~a~aiAEyfrd~G~~VLlv~DdlTr~A~A~REisL 275 (502)
T PRK13343 199 GQKASAVARVI---ETLREHGALEYTTVVVAEASDPPGLQYLAPFAGCAIAEYFRDQGQDALIVYDDLSKHAAAYRELSL 275 (502)
T ss_pred ccChHHHHHHH---HHHHhcCccceeEEEEecccccHHHHHHHHHHHHHHHHHHHhCCCCEEEEecchHHHHHHHHHHHH
Confidence 33444444444 5567777899988888877776542111 0 1122222212221
Q ss_pred ---cC-C-CCCChhHHHHHHHHhcCCCeec---CCCCCCCchh
Q 011047 240 ---KN-E-AEISPSTLYAIACVLENIPFIN---GSPQNTFVPG 274 (494)
Q Consensus 240 ---~n-~-~~i~aS~~YA~AAl~aG~~fIN---gtP~~t~ipa 274 (494)
+. . ...|||.+|..+-|.|++.-.| +.-|.|.+|.
T Consensus 276 ~l~epPgr~gYP~~vf~~~srLlERAg~~~~~~~gGSITal~~ 318 (502)
T PRK13343 276 LLRRPPGREAYPGDIFYLHSRLLERAAKLSPELGGGSLTALPI 318 (502)
T ss_pred hcCCCCCcCCcCcchHhhhHHHHHhhccCCCCCCCcceEEEEE
Confidence 21 1 2267888888888888777664 2234354554
No 76
>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=22.78 E-value=3.2e+02 Score=28.89 Aligned_cols=41 Identities=22% Similarity=0.410 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHhcCCCeEEEEEccCCcccccccCCccccHHHHHHhh
Q 011047 189 QMLQIIKDIREFKEKNKVDRVVVLWTANTERYSNVIVGLNDTVENLLASL 238 (494)
Q Consensus 189 ~ve~ir~DIr~Fk~~~~ld~vVVlw~AsTE~~~~~~~~~~~t~~~l~~al 238 (494)
-++++.+.+++|.++.+- +|. + .|. +.+++||+.+++++-.
T Consensus 228 ~l~~ll~~l~~~~~~~~~-~V~-i------eyv-LI~GvNDs~e~~~~L~ 268 (343)
T PRK14468 228 SIAEIMAAVRHYQAVTGR-RVT-L------EYT-MLKGVNDHLWQAELLA 268 (343)
T ss_pred CHHHHHHHHHHHHHhcCC-eEE-E------EEE-EeCCCcCCHHHHHHHH
Confidence 456778888889887653 332 2 233 6779999987765543
No 77
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=22.59 E-value=2.7e+02 Score=28.23 Aligned_cols=66 Identities=23% Similarity=0.310 Sum_probs=48.5
Q ss_pred cCCCCCCCchhHHHHHHHhCCccccCCCCCCcchhHHHHHHHHHhcCCceeEEEeeeecCCccccCCCCc
Q 011047 264 NGSPQNTFVPGLIDLAIRRNCLIGGDDFKSGQTKMKSVLVDFLVGAGIKPTSIVSYNHLGNNDGMNLSAP 333 (494)
Q Consensus 264 NgtP~~t~ipal~elae~~gvpi~GdD~KSGqT~lks~La~~l~~RGlkv~s~~s~NilGN~Dg~nL~~p 333 (494)
|+.|...|.-++-+....---.|-|.|. -+.|..+..+.+.| |...-....+..+=|.||.-|+-.
T Consensus 101 dg~ptY~~a~~vDD~~~~ithViRG~D~-~~~t~~q~~l~~aL---g~~~p~~~h~pll~~~~g~KLSKR 166 (239)
T cd00808 101 DGFPTYHLANVVDDHLMGITHVIRGEEH-LSSTPKQILLYEAL---GWEPPKFAHLPLILNPDGKKLSKR 166 (239)
T ss_pred CCCcccccHHHHhHHhcCCCEEEEChhh-hhChHHHHHHHHHc---CCCCCceEeeccccCCCCCcccCC
Confidence 8999755655667777777777899998 67888899999988 666666666666656666655543
No 78
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=22.46 E-value=1.5e+02 Score=31.72 Aligned_cols=87 Identities=21% Similarity=0.251 Sum_probs=54.3
Q ss_pred CChhH-HHHHHHHhcCCCeecCCCCC-CCchhHHHHHHHhCC----------------------------ccccCCCCCC
Q 011047 245 ISPST-LYAIACVLENIPFINGSPQN-TFVPGLIDLAIRRNC----------------------------LIGGDDFKSG 294 (494)
Q Consensus 245 i~aS~-~YA~AAl~aG~~fINgtP~~-t~ipal~elae~~gv----------------------------pi~GdD~KSG 294 (494)
++.|- -|+..|+.+|...+|+-=+. .-.|.+..+|++.|+ .++|.|-..|
T Consensus 82 ~~~~~~~~i~eAl~~G~nVvsglh~~ls~dp~~~k~A~~~G~rl~dvR~p~~~l~~~~tG~~~k~~a~~V~vvGTd~~vG 161 (339)
T COG3367 82 LPESWREYIVEALEAGMNVVSGLHSFLSDDPEFVKLAERTGVRLDDVRKPPLDLEYLCTGMARKVDAKVVLVVGTDCAVG 161 (339)
T ss_pred CcHHHHHHHHHHHHhCchhhhhhHHHhhcChHHHHHHHHcCCeeEeeccCccchhhhccCcccccCCcEEEEeccccccc
Confidence 44444 56667777777666665542 125777777766665 4567777667
Q ss_pred cchhHHHHHHHHHhcCCceeEE--EeeeecCCccccCCC
Q 011047 295 QTKMKSVLVDFLVGAGIKPTSI--VSYNHLGNNDGMNLS 331 (494)
Q Consensus 295 qT~lks~La~~l~~RGlkv~s~--~s~NilGN~Dg~nL~ 331 (494)
-----.-|..-++++|+++..+ =|+-++=-.||....
T Consensus 162 KrTTa~~L~~~~~e~G~~a~fvaTgqtgil~~~~gvvvd 200 (339)
T COG3367 162 KRTTALELREAAREEGIKAGFVATGQTGILIADDGVVVD 200 (339)
T ss_pred hhHHHHHHHHHHHHhCCccceEecCceeeEEecCceEec
Confidence 5555566889999999987543 355554444554443
No 79
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.25 E-value=4.6e+02 Score=27.41 Aligned_cols=105 Identities=10% Similarity=0.034 Sum_probs=62.2
Q ss_pred HHHHHHHhcCCCeEEEEEccCCcccccccCCccccHHHHHHhhhcCC--CCCChhHHHHHHHHhcCCCeecCCCCCCCch
Q 011047 196 DIREFKEKNKVDRVVVLWTANTERYSNVIVGLNDTVENLLASLDKNE--AEISPSTLYAIACVLENIPFINGSPQNTFVP 273 (494)
Q Consensus 196 DIr~Fk~~~~ld~vVVlw~AsTE~~~~~~~~~~~t~~~l~~al~~n~--~~i~aS~~YA~AAl~aG~~fINgtP~~t~ip 273 (494)
-|++.-+...+|-++|- .+-|.|-+...+.++|.-.. +-++|-.+--... ...+.|+=|||.
T Consensus 79 ~I~~lN~d~~V~GIivq----------lPLp~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~-g~~~~~~PcTp~----- 142 (282)
T PRK14182 79 LIARLNADPAVHGILVQ----------LPLPKHVDERAVLDAISPAKDADGFHPFNVGALSI-GIAGVPRPCTPA----- 142 (282)
T ss_pred HHHHHhCCCCCCEEEEe----------CCCCCCCCHHHHHhccCcccCcCCCCHhHHHHHhC-CCCCCCCCCCHH-----
Confidence 33555555555565543 12234667777777775421 2244433221111 112226767775
Q ss_pred hHHHHHHHhCCccccCCCCC--CcchhHHHHHHHHHhcCCceeEE
Q 011047 274 GLIDLAIRRNCLIGGDDFKS--GQTKMKSVLVDFLVGAGIKPTSI 316 (494)
Q Consensus 274 al~elae~~gvpi~GdD~KS--GqT~lks~La~~l~~RGlkv~s~ 316 (494)
|..++.+..++.+.|++.-= .-..+=.=|+-||..+|-.|...
T Consensus 143 avi~ll~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtic 187 (282)
T PRK14182 143 GVMRMLDEARVDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIA 187 (282)
T ss_pred HHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEe
Confidence 89999999999988887422 33356778899999998766643
No 80
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.23 E-value=4.1e+02 Score=27.69 Aligned_cols=84 Identities=11% Similarity=0.131 Sum_probs=55.4
Q ss_pred ccccHHHHHHhhhcC-C-CCCChhHHHHHHHHhcC--CCeecCCCCCCCchhHHHHHHHhCCccccCCCCC--CcchhHH
Q 011047 227 LNDTVENLLASLDKN-E-AEISPSTLYAIACVLEN--IPFINGSPQNTFVPGLIDLAIRRNCLIGGDDFKS--GQTKMKS 300 (494)
Q Consensus 227 ~~~t~~~l~~al~~n-~-~~i~aS~~YA~AAl~aG--~~fINgtP~~t~ipal~elae~~gvpi~GdD~KS--GqT~lks 300 (494)
.|-+...+.++|.-. | +-++|-.+--.+ .| -.|+=|||. |..++.+..++++-|++.-= .-..+=.
T Consensus 101 ~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~---~g~~~~~~PcTp~-----aii~lL~~y~i~l~Gk~vvViGrS~~VGk 172 (282)
T PRK14180 101 AHINKNNVIYSIKPEKDVDGFHPTNVGRLQ---LRDKKCLESCTPK-----GIMTMLREYGIKTEGAYAVVVGASNVVGK 172 (282)
T ss_pred CCCCHHHHHhhcCccccccccChhhHHHHh---cCCCCCcCCCCHH-----HHHHHHHHhCCCCCCCEEEEECCCCcchH
Confidence 455666777777542 1 224444332222 23 457777775 89999999999999988532 3345677
Q ss_pred HHHHHHHhcCCceeEEEe
Q 011047 301 VLVDFLVGAGIKPTSIVS 318 (494)
Q Consensus 301 ~La~~l~~RGlkv~s~~s 318 (494)
=|+-+|..+|-.|...-+
T Consensus 173 Pla~lL~~~~ATVt~chs 190 (282)
T PRK14180 173 PVSQLLLNAKATVTTCHR 190 (282)
T ss_pred HHHHHHHHCCCEEEEEcC
Confidence 889999999988866533
No 81
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.94 E-value=4.1e+02 Score=27.93 Aligned_cols=82 Identities=18% Similarity=0.207 Sum_probs=53.8
Q ss_pred ccccHHHHHHhhhcC--CCCCChhHHHHHHHHhcC-CCeecCCCCCCCchhHHHHHHHhCCccccCCCCC-Cc-chhHHH
Q 011047 227 LNDTVENLLASLDKN--EAEISPSTLYAIACVLEN-IPFINGSPQNTFVPGLIDLAIRRNCLIGGDDFKS-GQ-TKMKSV 301 (494)
Q Consensus 227 ~~~t~~~l~~al~~n--~~~i~aS~~YA~AAl~aG-~~fINgtP~~t~ipal~elae~~gvpi~GdD~KS-Gq-T~lks~ 301 (494)
.|-+...+.++|.-. -+-++|-.+-- +-.| -.|+-|||. |..++.+..|+++.|++.-= |. ..+=.=
T Consensus 102 ~~i~~~~i~~~I~p~KDVDGl~~~n~g~---l~~~~~~~~PcTp~-----aii~lL~~~~i~l~Gk~vvVIGrS~iVGkP 173 (297)
T PRK14186 102 KHLDEVPLLHAIDPDKDADGLHPLNLGR---LVKGEPGLRSCTPA-----GVMRLLRSQQIDIAGKKAVVVGRSILVGKP 173 (297)
T ss_pred CCCCHHHHHhccCcccCcccCChhhHHH---HhCCCCCCCCCCHH-----HHHHHHHHhCCCCCCCEEEEECCCccchHH
Confidence 455667777777542 12255443322 2222 337777775 89999999999999987422 33 356778
Q ss_pred HHHHHHhcCCceeEE
Q 011047 302 LVDFLVGAGIKPTSI 316 (494)
Q Consensus 302 La~~l~~RGlkv~s~ 316 (494)
|+-||..+|-.|...
T Consensus 174 la~lL~~~~atVtv~ 188 (297)
T PRK14186 174 LALMLLAANATVTIA 188 (297)
T ss_pred HHHHHHHCCCEEEEe
Confidence 999999999877554
No 82
>PF04705 TSNR_N: Thiostrepton-resistance methylase, N terminus; InterPro: IPR006795 This region is found in some members of the SpoU-type rRNA methylase family (IPR001537 from INTERPRO).; GO: 0008649 rRNA methyltransferase activity, 0046677 response to antibiotic; PDB: 3GYQ_B 3NK6_A 3NK7_A.
Probab=21.51 E-value=39 Score=30.68 Aligned_cols=31 Identities=26% Similarity=0.502 Sum_probs=19.7
Q ss_pred HHHhcCCCee-----cCCCCCCCchhHHHHHHHhCCccc
Q 011047 254 ACVLENIPFI-----NGSPQNTFVPGLIDLAIRRNCLIG 287 (494)
Q Consensus 254 AAl~aG~~fI-----NgtP~~t~ipal~elae~~gvpi~ 287 (494)
.||.+|+-|+ .++| +-|++..+|+++++||-
T Consensus 42 ~~i~AGvefieVYg~~~~p---~~~~ll~~c~~r~Ipvr 77 (115)
T PF04705_consen 42 HSIRAGVEFIEVYGSDGSP---VPPELLAACRQRGIPVR 77 (115)
T ss_dssp HHHCTT-EEEEEEEETTS------CCCCHHHHCTT--EE
T ss_pred HHHhcCcEEEEEeeecCCC---CChHHHHHHHhcCCceE
Confidence 4567788885 4555 78999999999999974
No 83
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.22 E-value=4.4e+02 Score=27.49 Aligned_cols=86 Identities=17% Similarity=0.215 Sum_probs=56.8
Q ss_pred CccccHHHHHHhhhcC-C-CCCChhHHHHHHHHhcCCCeecCCCCCCCchhHHHHHHHhCCccccCCCCC-Ccc-hhHHH
Q 011047 226 GLNDTVENLLASLDKN-E-AEISPSTLYAIACVLENIPFINGSPQNTFVPGLIDLAIRRNCLIGGDDFKS-GQT-KMKSV 301 (494)
Q Consensus 226 ~~~~t~~~l~~al~~n-~-~~i~aS~~YA~AAl~aG~~fINgtP~~t~ipal~elae~~gvpi~GdD~KS-GqT-~lks~ 301 (494)
|.|-+.+.+.++|.-. | +-++|-.+--... ..-.|+=|||. |..++-+..++++.|.+.-= |.. .+=+-
T Consensus 95 p~~i~~~~v~~~I~p~KDVDGl~~~n~g~l~~--~~~~~~PcTp~-----av~~ll~~~~i~l~Gk~V~ViGrs~~vGrp 167 (279)
T PRK14178 95 PKGVDTERVIAAILPEKDVDGFHPLNLGRLVS--GLPGFAPCTPN-----GIMTLLHEYKISIAGKRAVVVGRSIDVGRP 167 (279)
T ss_pred CCCCCHHHHHhccCcccCcccCChhhHHHHhC--CCCCCCCCCHH-----HHHHHHHHcCCCCCCCEEEEECCCccccHH
Confidence 3456677777777642 1 2255544322221 22346767775 89999999999998877533 555 66777
Q ss_pred HHHHHHhcCCceeEEEe
Q 011047 302 LVDFLVGAGIKPTSIVS 318 (494)
Q Consensus 302 La~~l~~RGlkv~s~~s 318 (494)
|+-+|..+|-.|....+
T Consensus 168 la~lL~~~~atVtv~hs 184 (279)
T PRK14178 168 MAALLLNADATVTICHS 184 (279)
T ss_pred HHHHHHhCCCeeEEEec
Confidence 88899999988877664
No 84
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.19 E-value=4e+02 Score=27.76 Aligned_cols=84 Identities=13% Similarity=0.217 Sum_probs=54.4
Q ss_pred CccccHHHHHHhhhcC-C-CCCChhHHHHHHHHhcCCCeecCCCCCCCchhHHHHHHHhCCccccCCCCC-Cc-chhHHH
Q 011047 226 GLNDTVENLLASLDKN-E-AEISPSTLYAIACVLENIPFINGSPQNTFVPGLIDLAIRRNCLIGGDDFKS-GQ-TKMKSV 301 (494)
Q Consensus 226 ~~~~t~~~l~~al~~n-~-~~i~aS~~YA~AAl~aG~~fINgtP~~t~ipal~elae~~gvpi~GdD~KS-Gq-T~lks~ 301 (494)
|.|-+...+.++|.-. | +-++|-.+--.+. ..-.|+=|||. |..++-+..++++.|++.-= |. ..+=.=
T Consensus 99 p~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~--~~~~~~PcTp~-----avi~lL~~~~i~l~Gk~vvViGrS~iVGkP 171 (282)
T PRK14169 99 PAGLDEQAVIDAIDPDKDVDGFSPVSVGRLWA--NEPTVVASTPY-----GIMALLDAYDIDVAGKRVVIVGRSNIVGRP 171 (282)
T ss_pred CCCCCHHHHHhhcCcccCcccCChhhhHHHhc--CCCCCCCCCHH-----HHHHHHHHhCCCCCCCEEEEECCCccchHH
Confidence 3466777777777642 1 2255543322221 12346777775 89999999999999987422 33 346778
Q ss_pred HHHHHHhcCCceeEE
Q 011047 302 LVDFLVGAGIKPTSI 316 (494)
Q Consensus 302 La~~l~~RGlkv~s~ 316 (494)
|+-||..+|-.|...
T Consensus 172 la~lL~~~~atVtic 186 (282)
T PRK14169 172 LAGLMVNHDATVTIA 186 (282)
T ss_pred HHHHHHHCCCEEEEE
Confidence 899999999777643
No 85
>PRK06740 histidinol-phosphatase; Validated
Probab=20.94 E-value=2.9e+02 Score=29.03 Aligned_cols=65 Identities=20% Similarity=0.223 Sum_probs=47.5
Q ss_pred HHHHHhcCCCe-ecCC-----CCCCC--chhHHHHHHHhCCc-cccCCCCC----CcchhHHHHHHHHHhcCCceeEEEe
Q 011047 252 AIACVLENIPF-INGS-----PQNTF--VPGLIDLAIRRNCL-IGGDDFKS----GQTKMKSVLVDFLVGAGIKPTSIVS 318 (494)
Q Consensus 252 A~AAl~aG~~f-INgt-----P~~t~--ipal~elae~~gvp-i~GdD~KS----GqT~lks~La~~l~~RGlkv~s~~s 318 (494)
+.|+.+.|+++ ||.+ |-..+ .+.+.+++.+.|+| ++|+|-=+ |. -+ ....+++++.|++...++.
T Consensus 245 ~~a~~~~g~~lEINt~~~~r~~~~e~yP~~~il~~~~e~Gv~~tlgSDAH~p~~VG~-~~-~~a~~~l~~~G~~~i~~f~ 322 (331)
T PRK06740 245 ARALVETNTATEINAGLYYRYPVREMCPSPLFLQVLAKHEVPITLSSDAHYPNDLGK-YV-EENVKTLRNHGVTSLATFT 322 (331)
T ss_pred HHHHHHcCCEEEEECccccCCCCCCCCcCHHHHHHHHHCCCeEEEeeCCCCHHHHHh-HH-HHHHHHHHHcCCcEEEEEe
Confidence 46667789999 9986 43223 35789999999988 47999766 44 12 2457899999999888775
No 86
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=20.82 E-value=7.4e+02 Score=26.92 Aligned_cols=106 Identities=18% Similarity=0.151 Sum_probs=62.6
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCeEEEEEccCCcccccccCCccccHHHHHHhhhcCCCCCChhHHHHHHH-Hhc--CCC
Q 011047 185 TKKEQMLQIIKDIREFKEKNKVDRVVVLWTANTERYSNVIVGLNDTVENLLASLDKNEAEISPSTLYAIAC-VLE--NIP 261 (494)
Q Consensus 185 t~~e~ve~ir~DIr~Fk~~~~ld~vVVlw~AsTE~~~~~~~~~~~t~~~l~~al~~n~~~i~aS~~YA~AA-l~a--G~~ 261 (494)
+..+.++.+++=|++=+.+.|-|--+.|.++++|.|. ...+.++- +.....+++.++-.++. +.+ +.-
T Consensus 211 ~~~~~l~~~~~ai~~~~~~~G~di~l~lD~aas~~~~-~~~~~y~~--------~~~~~~~s~~eai~~~~~lle~~~i~ 281 (425)
T TIGR01060 211 SNEEALEIISEAIEKAGYKPGEDVALALDCAASEFYD-EEDGKYVY--------KGENKQLTSEEMIEYYKELVEKYPIV 281 (425)
T ss_pred ccHHHHHHHHHHHHHHhhccCCceEEEEEcccccccc-ccCceeee--------cCcccccCHHHHHHHHHHHHhcCCcE
Confidence 3567788887777777777787888999999988885 12122211 11112355554433332 333 444
Q ss_pred eecCCCCC-CCchhHHHHHHHh--CCccccCCC-CCCcchhHH
Q 011047 262 FINGSPQN-TFVPGLIDLAIRR--NCLIGGDDF-KSGQTKMKS 300 (494)
Q Consensus 262 fINgtP~~-t~ipal~elae~~--gvpi~GdD~-KSGqT~lks 300 (494)
||-= |-. .-..++.++.++. .+||+|||. -|+-..++.
T Consensus 282 ~iEd-Pl~~~D~~~~~~L~~~~~~~ipI~gDE~~~t~~~~~~~ 323 (425)
T TIGR01060 282 SIED-GLSEEDWEGWAELTKELGDKVQIVGDDLFVTNTEILRE 323 (425)
T ss_pred EEEc-CCCcccHHHHHHHHHhcCCCCeEEeCCCcccCHHHHHH
Confidence 4431 311 1256888888887 799999995 444444443
No 87
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=20.34 E-value=89 Score=33.97 Aligned_cols=24 Identities=17% Similarity=0.162 Sum_probs=19.2
Q ss_pred HHHHHhcCCCeEEEEEccCCcccc
Q 011047 198 REFKEKNKVDRVVVLWTANTERYS 221 (494)
Q Consensus 198 r~Fk~~~~ld~vVVlw~AsTE~~~ 221 (494)
+++++...++|.||++..+-|++.
T Consensus 183 ~~~~~~~~~~~tvvv~~tsd~~~~ 206 (411)
T TIGR03496 183 EDILGEEGLARSVVVAATADESPL 206 (411)
T ss_pred HHHhhCCCcceEEEEEECCCCCHH
Confidence 567777889999888888888654
No 88
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=20.29 E-value=4.5e+02 Score=28.37 Aligned_cols=107 Identities=15% Similarity=0.240 Sum_probs=67.9
Q ss_pred HHHHHHHHhcCCCeEEEEEccCCcccccccCCccccHHHHHHhhhcC-C-CCCChhHHHHHHHHhcCCCeecCCCCCCCc
Q 011047 195 KDIREFKEKNKVDRVVVLWTANTERYSNVIVGLNDTVENLLASLDKN-E-AEISPSTLYAIACVLENIPFINGSPQNTFV 272 (494)
Q Consensus 195 ~DIr~Fk~~~~ld~vVVlw~AsTE~~~~~~~~~~~t~~~l~~al~~n-~-~~i~aS~~YA~AAl~aG~~fINgtP~~t~i 272 (494)
+-|+++-+...+|-++|- .+-|.|-+.+.+.++|.-. | +-++|-.+--.+.-...-.|+=|||.
T Consensus 134 ~~I~~lN~D~~V~GIlVQ----------lPLP~hid~~~i~~~I~p~KDVDGl~p~N~G~L~~~~~~~~~~PCTp~---- 199 (345)
T PLN02897 134 SALRKFNEDTSIHGILVQ----------LPLPQHLDESKILNMVRLEKDVDGFHPLNVGNLAMRGREPLFVSCTPK---- 199 (345)
T ss_pred HHHHHHhCCCCCCEEEEe----------CCCCCCCCHHHHHhccCcccCccCCCHHHHHHHhcCCCCCCCcCCCHH----
Confidence 334566555666666653 2224566788888888643 1 22555543322210112457878886
Q ss_pred hhHHHHHHHhCCccccCCCCC--CcchhHHHHHHHHHhcCCceeEE
Q 011047 273 PGLIDLAIRRNCLIGGDDFKS--GQTKMKSVLVDFLVGAGIKPTSI 316 (494)
Q Consensus 273 pal~elae~~gvpi~GdD~KS--GqT~lks~La~~l~~RGlkv~s~ 316 (494)
|..++-++.++++.|++.-= --..+=.=|+-+|..+|-.|...
T Consensus 200 -avi~LL~~~~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTic 244 (345)
T PLN02897 200 -GCVELLIRSGVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTV 244 (345)
T ss_pred -HHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEE
Confidence 89999999999999988432 33456777899999999877544
No 89
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=20.12 E-value=3.5e+02 Score=29.99 Aligned_cols=69 Identities=25% Similarity=0.262 Sum_probs=47.9
Q ss_pred CCCChhHHHHHHHHhcCCCeecCCCCCCCchhHHHHHHHh--CCccccCCCCCCcchhHHHHHHHHHhcCCceeEEEeee
Q 011047 243 AEISPSTLYAIACVLENIPFINGSPQNTFVPGLIDLAIRR--NCLIGGDDFKSGQTKMKSVLVDFLVGAGIKPTSIVSYN 320 (494)
Q Consensus 243 ~~i~aS~~YA~AAl~aG~~fINgtP~~t~ipal~elae~~--gvpi~GdD~KSGqT~lks~La~~l~~RGlkv~s~~s~N 320 (494)
|-|++..-.-.+|...|++.+ +-+|||-+. ..|+.|=-+-.|-|-..+.++.+|+..|.+. ...=|
T Consensus 77 PGi~~~~p~v~~A~~~gi~i~----------~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~--~lgGN 144 (448)
T COG0771 77 PGIPPTHPLVEAAKAAGIEII----------GDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDA--LLGGN 144 (448)
T ss_pred CCCCCCCHHHHHHHHcCCcEE----------eHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCc--eeccc
Confidence 456666666666766766654 556666663 5677666665688999999999999999954 44445
Q ss_pred ecC
Q 011047 321 HLG 323 (494)
Q Consensus 321 ilG 323 (494)
|+.
T Consensus 145 IG~ 147 (448)
T COG0771 145 IGT 147 (448)
T ss_pred cCc
Confidence 543
No 90
>PF09617 Cas_GSU0053: CRISPR-associated protein GSU0053 (Cas_GSU0053); InterPro: IPR013403 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry is found in CRISPR-associated (cas) proteins in the genomes of Geobacter sulfurreducens PCA and Desulfotalea psychrophila LSv54 (both Desulfobacterales from the Deltaproteobacteria), Gemmata obscuriglobus (a Planctomycete), and Actinomyces naeslundii MG1 (Actinobacteria).
Probab=20.09 E-value=44 Score=32.32 Aligned_cols=13 Identities=38% Similarity=1.130 Sum_probs=11.6
Q ss_pred CCCCCeeeecccC
Q 011047 116 VNPDDIVFGGWDI 128 (494)
Q Consensus 116 ~~~~dlVfGGwDI 128 (494)
.+|+.|+||.||=
T Consensus 129 ~~P~sLlfG~wdS 141 (169)
T PF09617_consen 129 LDPTSLLFGVWDS 141 (169)
T ss_pred hCcceeeeeEEec
Confidence 4799999999986
Done!