Query 011050
Match_columns 494
No_of_seqs 381 out of 3925
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 07:33:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011050.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011050hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10787 DNA-binding ATP-depen 99.9 6E-26 1.3E-30 246.8 19.4 193 288-494 10-210 (784)
2 PF02190 LON: ATP-dependent pr 99.9 1.1E-25 2.4E-30 209.6 14.4 189 289-486 2-205 (205)
3 COG2802 Uncharacterized protei 99.9 1.8E-24 3.9E-29 193.5 17.9 188 287-488 10-208 (221)
4 TIGR00763 lon ATP-dependent pr 99.9 2.3E-24 5.1E-29 236.8 18.3 192 290-493 1-207 (775)
5 KOG4159 Predicted E3 ubiquitin 99.9 2.2E-24 4.7E-29 213.2 13.7 288 193-486 75-382 (398)
6 COG0466 Lon ATP-dependent Lon 99.9 3E-23 6.6E-28 213.1 17.1 193 288-493 9-210 (782)
7 KOG0553 TPR repeat-containing 99.8 1.2E-20 2.6E-25 176.2 11.6 125 42-189 76-200 (304)
8 KOG0548 Molecular co-chaperone 99.7 3.9E-16 8.5E-21 155.6 11.9 117 46-185 357-473 (539)
9 KOG4234 TPR repeat-containing 99.6 1.1E-15 2.3E-20 134.4 11.0 124 44-190 92-220 (271)
10 KOG4642 Chaperone-dependent E3 99.6 6.2E-16 1.3E-20 139.5 9.6 201 44-269 7-277 (284)
11 KOG0548 Molecular co-chaperone 99.6 6.6E-16 1.4E-20 154.0 10.3 113 47-182 2-114 (539)
12 KOG4648 Uncharacterized conser 99.6 3.8E-15 8.2E-20 140.7 10.5 121 42-185 92-212 (536)
13 KOG0543 FKBP-type peptidyl-pro 99.6 5.9E-15 1.3E-19 143.7 11.0 127 41-190 202-343 (397)
14 KOG0547 Translocase of outer m 99.6 2.9E-14 6.2E-19 140.5 12.8 120 40-182 108-228 (606)
15 PLN03088 SGT1, suppressor of 99.5 5.4E-14 1.2E-18 141.6 10.1 119 47-188 2-120 (356)
16 PRK15359 type III secretion sy 99.5 3E-13 6.5E-18 118.3 10.9 115 49-186 26-140 (144)
17 KOG0376 Serine-threonine phosp 99.4 4.1E-13 8.8E-18 133.3 8.5 121 46-189 3-123 (476)
18 KOG0550 Molecular chaperone (D 99.4 6.1E-13 1.3E-17 128.9 9.3 124 43-190 245-372 (486)
19 TIGR02552 LcrH_SycD type III s 99.4 6.2E-12 1.3E-16 108.7 11.2 117 46-185 16-132 (135)
20 PRK15363 pathogenicity island 99.3 1.7E-11 3.7E-16 106.1 10.7 120 44-186 32-151 (157)
21 PRK10370 formate-dependent nit 99.3 2.3E-11 5E-16 112.2 9.6 116 44-182 70-188 (198)
22 KOG0551 Hsp90 co-chaperone CNS 99.2 3.5E-11 7.5E-16 113.9 10.2 111 43-176 77-191 (390)
23 KOG0545 Aryl-hydrocarbon recep 99.2 5.1E-11 1.1E-15 108.3 10.5 126 41-189 172-316 (329)
24 PRK11189 lipoprotein NlpI; Pro 99.2 2.8E-11 6.1E-16 119.2 8.8 105 45-172 62-166 (296)
25 KOG4626 O-linked N-acetylgluco 99.2 2.2E-11 4.8E-16 123.2 7.2 116 47-185 252-367 (966)
26 TIGR00990 3a0801s09 mitochondr 99.2 7.8E-11 1.7E-15 128.0 12.1 107 43-173 123-229 (615)
27 KOG4626 O-linked N-acetylgluco 99.2 4.6E-11 1E-15 121.0 9.1 103 49-174 390-492 (966)
28 smart00504 Ubox Modified RING 99.2 1.5E-11 3.3E-16 91.3 4.2 63 202-266 1-63 (63)
29 PF15227 zf-C3HC4_4: zinc fing 99.2 1.3E-11 2.8E-16 82.8 3.0 38 205-242 1-42 (42)
30 KOG0624 dsRNA-activated protei 99.1 1.2E-10 2.5E-15 110.7 8.2 115 44-181 35-149 (504)
31 PF04564 U-box: U-box domain; 99.1 3.9E-11 8.5E-16 91.5 4.0 68 200-269 2-70 (73)
32 TIGR02795 tol_pal_ybgF tol-pal 99.1 7.1E-10 1.5E-14 93.0 8.8 110 47-179 2-117 (119)
33 KOG2004 Mitochondrial ATP-depe 99.0 2.4E-09 5.2E-14 111.0 12.7 197 287-494 67-298 (906)
34 COG3063 PilF Tfp pilus assembl 99.0 1.3E-09 2.8E-14 98.8 9.2 108 41-172 29-136 (250)
35 PF13414 TPR_11: TPR repeat; P 99.0 3.2E-10 6.9E-15 85.7 4.1 67 46-135 2-69 (69)
36 cd00189 TPR Tetratricopeptide 99.0 3.7E-09 8E-14 83.3 10.1 99 49-170 2-100 (100)
37 PF13414 TPR_11: TPR repeat; P 99.0 5.8E-10 1.3E-14 84.3 4.1 67 80-169 2-69 (69)
38 smart00464 LON Found in ATP-de 99.0 1.8E-09 3.9E-14 86.7 7.2 87 289-483 2-92 (92)
39 TIGR00990 3a0801s09 mitochondr 99.0 2.3E-09 5E-14 116.5 10.4 114 45-181 329-442 (615)
40 PLN03208 E3 ubiquitin-protein 99.0 4.3E-10 9.3E-15 99.9 3.7 49 199-247 15-79 (193)
41 TIGR00599 rad18 DNA repair pro 98.9 5.9E-10 1.3E-14 111.0 4.5 67 198-266 22-88 (397)
42 KOG0823 Predicted E3 ubiquitin 98.9 4E-10 8.7E-15 101.7 2.9 50 198-247 43-95 (230)
43 KOG0317 Predicted E3 ubiquitin 98.9 5.1E-10 1.1E-14 103.9 3.3 49 199-247 236-284 (293)
44 KOG0547 Translocase of outer m 98.9 6.8E-09 1.5E-13 103.1 11.2 106 44-172 323-428 (606)
45 KOG1126 DNA-binding cell divis 98.9 2.1E-09 4.5E-14 110.5 7.8 117 47-186 421-537 (638)
46 KOG0287 Postreplication repair 98.9 3.8E-10 8.3E-15 106.0 2.1 65 200-266 21-85 (442)
47 PF14835 zf-RING_6: zf-RING of 98.9 5.4E-10 1.2E-14 79.7 2.3 58 202-263 7-65 (65)
48 KOG4555 TPR repeat-containing 98.9 9.5E-09 2.1E-13 84.8 9.6 110 40-172 36-149 (175)
49 KOG1125 TPR repeat-containing 98.9 1.1E-09 2.3E-14 111.0 4.3 100 48-170 431-530 (579)
50 KOG1308 Hsp70-interacting prot 98.9 1.1E-09 2.3E-14 104.6 3.9 108 40-170 107-214 (377)
51 PRK09782 bacteriophage N4 rece 98.9 6.1E-09 1.3E-13 116.9 10.1 112 47-181 609-720 (987)
52 PF13923 zf-C3HC4_2: Zinc fing 98.9 1.2E-09 2.5E-14 72.4 2.5 38 205-242 1-39 (39)
53 PF12895 Apc3: Anaphase-promot 98.9 1.8E-09 4E-14 85.1 4.0 82 59-164 1-84 (84)
54 PRK15331 chaperone protein Sic 98.9 1.8E-08 4E-13 87.7 10.3 117 45-185 35-151 (165)
55 PRK02603 photosystem I assembl 98.8 1.1E-08 2.3E-13 92.5 8.7 107 42-171 30-153 (172)
56 KOG1155 Anaphase-promoting com 98.8 1.7E-08 3.8E-13 99.7 10.6 121 47-190 364-484 (559)
57 PRK15359 type III secretion sy 98.8 8.5E-09 1.8E-13 90.2 7.3 93 67-185 13-105 (144)
58 TIGR03302 OM_YfiO outer membra 98.8 1.5E-08 3.2E-13 96.3 9.4 117 44-183 30-160 (235)
59 KOG1126 DNA-binding cell divis 98.8 6.6E-09 1.4E-13 106.9 7.1 124 43-189 485-608 (638)
60 PRK11189 lipoprotein NlpI; Pro 98.8 1.6E-08 3.4E-13 99.7 9.1 139 46-184 97-283 (296)
61 PRK12370 invasion protein regu 98.8 1.4E-08 3E-13 108.8 9.3 92 61-175 318-409 (553)
62 COG4235 Cytochrome c biogenesi 98.8 3.7E-08 8E-13 93.5 10.8 118 43-180 152-269 (287)
63 PRK12370 invasion protein regu 98.8 1.3E-08 2.8E-13 109.0 8.9 113 46-181 337-450 (553)
64 KOG0624 dsRNA-activated protei 98.8 5.3E-08 1.1E-12 92.9 10.8 117 47-186 155-271 (504)
65 PRK15179 Vi polysaccharide bio 98.8 3E-08 6.5E-13 107.3 10.4 110 46-178 85-194 (694)
66 KOG1155 Anaphase-promoting com 98.8 2.7E-08 5.9E-13 98.3 8.8 112 53-187 336-447 (559)
67 CHL00033 ycf3 photosystem I as 98.7 5.2E-08 1.1E-12 87.6 9.6 107 43-172 31-154 (168)
68 PRK10803 tol-pal system protei 98.7 4E-08 8.7E-13 94.3 9.1 112 47-181 142-260 (263)
69 COG5010 TadD Flp pilus assembl 98.7 7.2E-08 1.6E-12 89.4 10.3 117 50-189 103-219 (257)
70 PF13920 zf-C3HC4_3: Zinc fing 98.7 6.9E-09 1.5E-13 72.9 2.8 45 202-246 2-47 (50)
71 PF13639 zf-RING_2: Ring finge 98.7 3.4E-09 7.5E-14 72.3 1.2 40 204-243 2-44 (44)
72 COG5432 RAD18 RING-finger-cont 98.7 6.3E-09 1.4E-13 95.9 3.0 46 201-246 24-69 (391)
73 PLN02789 farnesyltranstransfer 98.7 6.3E-08 1.4E-12 95.7 10.1 123 58-181 48-185 (320)
74 PF13432 TPR_16: Tetratricopep 98.7 1.5E-08 3.2E-13 75.6 4.2 64 86-172 2-65 (65)
75 TIGR02521 type_IV_pilW type IV 98.7 9.3E-08 2E-12 89.2 10.4 103 43-168 27-129 (234)
76 PRK10370 formate-dependent nit 98.7 3.6E-08 7.7E-13 91.0 7.3 97 60-179 52-151 (198)
77 PHA02929 N1R/p28-like protein; 98.7 1.4E-08 2.9E-13 94.5 3.5 48 200-247 172-227 (238)
78 TIGR02552 LcrH_SycD type III s 98.7 7.6E-08 1.6E-12 82.9 7.9 95 68-185 4-98 (135)
79 KOG1310 WD40 repeat protein [G 98.7 5.1E-08 1.1E-12 97.6 7.4 126 41-186 368-493 (758)
80 PRK09782 bacteriophage N4 rece 98.7 6.6E-08 1.4E-12 108.7 9.3 106 55-184 584-689 (987)
81 PF13432 TPR_16: Tetratricopep 98.6 3E-08 6.4E-13 73.9 4.4 64 52-138 2-65 (65)
82 TIGR02521 type_IV_pilW type IV 98.6 1.3E-07 2.8E-12 88.2 9.8 112 47-181 65-178 (234)
83 PF00097 zf-C3HC4: Zinc finger 98.6 1.7E-08 3.7E-13 67.7 2.6 38 205-242 1-41 (41)
84 KOG0550 Molecular chaperone (D 98.6 6.2E-08 1.3E-12 94.7 7.1 106 34-162 36-141 (486)
85 COG3063 PilF Tfp pilus assembl 98.6 1.6E-07 3.4E-12 85.5 9.2 113 46-181 68-182 (250)
86 KOG0320 Predicted E3 ubiquitin 98.6 1.5E-08 3.3E-13 87.4 2.4 50 198-247 127-178 (187)
87 PRK15174 Vi polysaccharide exp 98.6 1.1E-07 2.3E-12 103.9 9.1 99 54-175 219-321 (656)
88 PF06552 TOM20_plant: Plant sp 98.6 1.1E-07 2.5E-12 83.5 7.0 108 63-183 7-125 (186)
89 COG5152 Uncharacterized conser 98.6 1.9E-08 4.2E-13 87.7 1.6 119 129-263 135-254 (259)
90 KOG1173 Anaphase-promoting com 98.6 1.9E-07 4.1E-12 94.6 8.6 110 49-181 416-532 (611)
91 PRK15174 Vi polysaccharide exp 98.6 1.6E-07 3.6E-12 102.4 8.9 103 48-173 247-353 (656)
92 PF13429 TPR_15: Tetratricopep 98.6 6.4E-08 1.4E-12 94.6 5.1 119 46-187 145-263 (280)
93 PRK11788 tetratricopeptide rep 98.6 2E-07 4.4E-12 95.3 8.9 103 48-173 181-284 (389)
94 PLN02789 farnesyltranstransfer 98.5 4.1E-07 8.9E-12 90.0 10.1 56 121-176 54-110 (320)
95 PF13512 TPR_18: Tetratricopep 98.5 5.9E-07 1.3E-11 76.7 9.6 109 47-178 10-139 (142)
96 PRK15179 Vi polysaccharide bio 98.5 3.5E-07 7.7E-12 99.1 10.1 116 44-182 117-233 (694)
97 TIGR03302 OM_YfiO outer membra 98.5 7.3E-07 1.6E-11 84.6 11.1 103 48-173 71-201 (235)
98 PF13371 TPR_9: Tetratricopept 98.5 3.3E-07 7.1E-12 69.9 6.9 69 54-145 2-70 (73)
99 KOG4162 Predicted calmodulin-b 98.5 3.4E-07 7.4E-12 95.8 8.6 104 47-173 684-789 (799)
100 PF13445 zf-RING_UBOX: RING-ty 98.5 5.6E-08 1.2E-12 65.1 1.8 30 205-235 1-34 (43)
101 cd00162 RING RING-finger (Real 98.5 9.3E-08 2E-12 65.3 2.9 42 204-245 1-44 (45)
102 PF13371 TPR_9: Tetratricopept 98.5 2.4E-07 5.2E-12 70.7 5.3 71 88-181 2-72 (73)
103 PRK10049 pgaA outer membrane p 98.5 4.3E-07 9.3E-12 101.1 9.3 111 47-181 49-159 (765)
104 PF14634 zf-RING_5: zinc-RING 98.5 1.2E-07 2.7E-12 64.5 3.0 41 204-244 1-44 (44)
105 PRK11447 cellulose synthase su 98.4 5.2E-07 1.1E-11 105.0 9.5 126 52-181 274-428 (1157)
106 PF14559 TPR_19: Tetratricopep 98.4 2.4E-07 5.2E-12 69.6 4.3 67 57-146 1-67 (68)
107 TIGR02917 PEP_TPR_lipo putativ 98.4 9E-07 2E-11 99.6 10.5 112 44-178 122-233 (899)
108 COG5574 PEX10 RING-finger-cont 98.4 9E-08 1.9E-12 88.1 1.9 48 200-247 213-262 (271)
109 KOG2076 RNA polymerase III tra 98.4 2.3E-06 4.9E-11 91.2 12.0 127 43-169 135-272 (895)
110 PRK10049 pgaA outer membrane p 98.4 1E-06 2.2E-11 98.2 9.8 111 48-181 360-470 (765)
111 PF14559 TPR_19: Tetratricopep 98.4 7.4E-07 1.6E-11 66.9 5.9 60 121-180 8-67 (68)
112 PHA02926 zinc finger-like prot 98.4 1.6E-07 3.4E-12 84.4 2.3 47 200-246 168-229 (242)
113 KOG2003 TPR repeat-containing 98.4 4.6E-07 1E-11 89.3 5.7 113 46-181 489-601 (840)
114 KOG1174 Anaphase-promoting com 98.4 5.2E-07 1.1E-11 88.2 6.1 142 44-186 331-519 (564)
115 PRK10153 DNA-binding transcrip 98.4 1.5E-06 3.2E-11 91.6 9.9 127 46-173 338-488 (517)
116 PRK11906 transcriptional regul 98.4 2.6E-06 5.6E-11 85.9 11.1 118 49-180 257-380 (458)
117 KOG2164 Predicted E3 ubiquitin 98.3 3.2E-07 7E-12 92.1 3.5 53 202-256 186-243 (513)
118 KOG2660 Locus-specific chromos 98.3 2.4E-07 5.3E-12 88.0 2.1 74 198-271 11-87 (331)
119 PRK11788 tetratricopeptide rep 98.3 2.7E-06 5.9E-11 87.0 10.0 108 48-178 108-220 (389)
120 COG4783 Putative Zn-dependent 98.3 2.8E-06 6E-11 85.3 9.5 120 47-189 306-425 (484)
121 PLN03098 LPA1 LOW PSII ACCUMUL 98.3 1.4E-06 3E-11 87.7 7.2 71 41-134 69-142 (453)
122 PF13525 YfiO: Outer membrane 98.3 4.6E-06 9.9E-11 77.4 10.1 113 46-181 4-133 (203)
123 PRK11447 cellulose synthase su 98.3 2E-06 4.4E-11 100.1 9.2 101 49-172 605-705 (1157)
124 PLN03098 LPA1 LOW PSII ACCUMUL 98.3 6.5E-07 1.4E-11 90.0 4.3 69 76-167 70-141 (453)
125 COG4783 Putative Zn-dependent 98.3 3.5E-06 7.6E-11 84.5 9.1 118 45-185 338-455 (484)
126 smart00184 RING Ring finger. E 98.3 7E-07 1.5E-11 58.6 2.8 38 205-242 1-39 (39)
127 PF09976 TPR_21: Tetratricopep 98.2 3.3E-06 7.1E-11 73.9 7.8 95 47-165 48-145 (145)
128 PLN03088 SGT1, suppressor of 98.2 2.7E-06 5.8E-11 85.9 8.0 84 46-152 35-118 (356)
129 COG1729 Uncharacterized protei 98.2 5.6E-06 1.2E-10 77.9 9.1 112 47-181 141-258 (262)
130 COG4785 NlpI Lipoprotein NlpI, 98.2 1.2E-06 2.6E-11 78.9 4.3 106 45-173 63-168 (297)
131 KOG2177 Predicted E3 ubiquitin 98.2 6.8E-07 1.5E-11 89.0 3.2 64 199-266 10-73 (386)
132 PRK10866 outer membrane biogen 98.2 5.9E-06 1.3E-10 78.7 9.3 113 46-181 31-167 (243)
133 TIGR02917 PEP_TPR_lipo putativ 98.2 4.2E-06 9E-11 94.3 9.8 108 50-180 570-677 (899)
134 KOG1813 Predicted E3 ubiquitin 98.2 5.3E-07 1.1E-11 84.2 1.9 105 130-247 181-286 (313)
135 KOG1125 TPR repeat-containing 98.2 4.2E-06 9.2E-11 85.3 8.0 135 42-178 314-470 (579)
136 COG5010 TadD Flp pilus assembl 98.2 3.6E-06 7.7E-11 78.3 6.9 106 51-179 70-175 (257)
137 PF12678 zf-rbx1: RING-H2 zinc 98.2 1.7E-06 3.6E-11 65.8 3.6 41 203-243 20-73 (73)
138 KOG1400 Predicted ATP-dependen 98.1 2.7E-06 5.9E-11 81.1 5.4 213 281-493 58-323 (371)
139 PRK14574 hmsH outer membrane p 98.1 7.4E-06 1.6E-10 90.6 9.6 110 46-178 33-142 (822)
140 KOG0311 Predicted E3 ubiquitin 98.1 5.5E-07 1.2E-11 86.0 -0.2 70 199-269 40-111 (381)
141 PRK15363 pathogenicity island 98.1 7.8E-06 1.7E-10 71.1 6.9 86 74-182 27-113 (157)
142 TIGR00570 cdk7 CDK-activating 98.1 3.1E-06 6.8E-11 81.1 4.4 47 201-247 2-54 (309)
143 KOG0543 FKBP-type peptidyl-pro 98.1 2E-05 4.3E-10 77.8 10.0 98 50-170 260-358 (397)
144 PF12688 TPR_5: Tetratrico pep 98.1 1.4E-05 3E-10 67.0 7.7 96 48-166 2-103 (120)
145 KOG0546 HSP90 co-chaperone CPR 98.1 8.3E-06 1.8E-10 78.8 6.9 124 43-189 218-360 (372)
146 PRK14574 hmsH outer membrane p 98.0 1.7E-05 3.6E-10 87.8 9.6 107 48-178 103-209 (822)
147 KOG1173 Anaphase-promoting com 98.0 2.5E-05 5.4E-10 79.6 9.6 115 51-188 384-505 (611)
148 KOG2002 TPR-containing nuclear 98.0 4.6E-05 9.9E-10 82.1 11.9 114 44-180 304-422 (1018)
149 KOG0553 TPR repeat-containing 98.0 7.3E-06 1.6E-10 77.7 5.4 83 48-153 116-198 (304)
150 PF13429 TPR_15: Tetratricopep 98.0 8E-06 1.7E-10 79.7 5.5 110 50-182 113-224 (280)
151 cd00189 TPR Tetratricopeptide 98.0 4E-05 8.7E-10 59.6 8.1 76 83-181 2-77 (100)
152 KOG2076 RNA polymerase III tra 98.0 4.5E-05 9.8E-10 81.6 10.6 96 48-166 208-308 (895)
153 cd05804 StaR_like StaR_like; a 98.0 3E-05 6.4E-10 78.3 9.1 122 48-170 44-180 (355)
154 KOG3060 Uncharacterized conser 98.0 5.3E-05 1.2E-09 70.1 9.6 109 50-181 89-197 (289)
155 cd05804 StaR_like StaR_like; a 98.0 2.5E-05 5.4E-10 78.8 8.5 101 47-170 114-218 (355)
156 PRK11906 transcriptional regul 97.9 1.7E-05 3.7E-10 80.0 6.9 91 61-174 318-408 (458)
157 KOG1128 Uncharacterized conser 97.9 2.7E-05 5.8E-10 81.5 8.2 105 53-180 491-595 (777)
158 CHL00033 ycf3 photosystem I as 97.9 1.4E-05 3E-10 71.8 5.2 108 53-183 5-117 (168)
159 COG2956 Predicted N-acetylgluc 97.9 4.7E-05 1E-09 72.7 8.8 103 47-172 180-283 (389)
160 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 4.9E-05 1.1E-09 76.9 9.1 98 52-172 205-302 (395)
161 KOG1156 N-terminal acetyltrans 97.9 5.9E-05 1.3E-09 78.1 9.0 119 47-188 7-125 (700)
162 KOG0978 E3 ubiquitin ligase in 97.8 1.3E-05 2.9E-10 84.7 3.8 75 173-247 605-689 (698)
163 KOG2002 TPR-containing nuclear 97.8 9.5E-05 2.1E-09 79.7 10.1 111 54-187 653-765 (1018)
164 PRK14720 transcript cleavage f 97.8 6E-05 1.3E-09 83.0 8.7 127 46-178 30-156 (906)
165 COG5243 HRD1 HRD ubiquitin lig 97.8 9.8E-06 2.1E-10 77.8 2.1 49 199-247 284-345 (491)
166 KOG1941 Acetylcholine receptor 97.8 5.3E-05 1.1E-09 73.3 7.0 97 48-167 123-235 (518)
167 PF13424 TPR_12: Tetratricopep 97.8 7.6E-06 1.6E-10 63.2 1.1 64 81-167 5-75 (78)
168 KOG1127 TPR repeat-containing 97.8 2.3E-05 5E-10 84.4 4.8 110 48-180 563-672 (1238)
169 KOG4162 Predicted calmodulin-b 97.8 9.8E-05 2.1E-09 77.9 9.2 120 47-189 650-771 (799)
170 KOG4628 Predicted E3 ubiquitin 97.8 2.6E-05 5.7E-10 76.1 4.5 45 203-247 230-278 (348)
171 PF13431 TPR_17: Tetratricopep 97.7 2.3E-05 5E-10 49.9 2.3 32 127-158 2-33 (34)
172 KOG0495 HAT repeat protein [RN 97.7 0.00032 6.9E-09 72.8 11.7 139 52-190 589-737 (913)
173 PF00515 TPR_1: Tetratricopept 97.7 2.2E-05 4.7E-10 50.0 1.9 34 138-171 1-34 (34)
174 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.00011 2.4E-09 61.1 6.3 68 82-172 3-73 (119)
175 TIGR00540 hemY_coli hemY prote 97.6 0.0003 6.5E-09 72.7 10.7 120 43-185 80-200 (409)
176 COG5540 RING-finger-containing 97.6 3E-05 6.6E-10 72.6 2.7 45 203-247 324-372 (374)
177 PRK02603 photosystem I assembl 97.6 6.6E-05 1.4E-09 67.6 4.7 82 78-182 32-116 (172)
178 PF11789 zf-Nse: Zinc-finger o 97.6 3.9E-05 8.4E-10 55.0 2.2 44 199-242 8-54 (57)
179 PF12861 zf-Apc11: Anaphase-pr 97.6 5.2E-05 1.1E-09 58.2 2.9 43 204-246 34-81 (85)
180 KOG1127 TPR repeat-containing 97.6 0.00011 2.5E-09 79.3 6.5 130 47-176 492-634 (1238)
181 PF13424 TPR_12: Tetratricopep 97.6 5.8E-05 1.3E-09 58.2 3.1 66 46-134 4-76 (78)
182 PF07719 TPR_2: Tetratricopept 97.6 5.8E-05 1.3E-09 47.9 2.6 34 138-171 1-34 (34)
183 COG4105 ComL DNA uptake lipopr 97.5 0.00076 1.6E-08 63.2 10.3 109 46-177 33-155 (254)
184 KOG4234 TPR repeat-containing 97.5 0.0003 6.4E-09 63.0 7.2 70 48-140 135-204 (271)
185 PRK10747 putative protoheme IX 97.5 0.00048 1E-08 70.8 10.0 108 46-177 83-192 (398)
186 PRK10866 outer membrane biogen 97.5 0.00075 1.6E-08 64.3 10.5 129 48-185 70-222 (243)
187 PF09976 TPR_21: Tetratricopep 97.5 0.001 2.2E-08 58.0 10.3 97 44-163 8-110 (145)
188 PRK10747 putative protoheme IX 97.5 0.00072 1.6E-08 69.6 10.7 101 50-173 121-222 (398)
189 COG4235 Cytochrome c biogenesi 97.5 0.00041 8.8E-09 66.3 8.0 96 60-178 135-233 (287)
190 KOG0802 E3 ubiquitin ligase [P 97.5 3.8E-05 8.3E-10 81.8 1.2 48 200-247 289-341 (543)
191 KOG0824 Predicted E3 ubiquitin 97.4 6.4E-05 1.4E-09 70.7 2.2 47 201-247 6-53 (324)
192 KOG3060 Uncharacterized conser 97.4 0.0011 2.3E-08 61.6 10.1 112 52-186 125-239 (289)
193 TIGR00540 hemY_coli hemY prote 97.4 0.00074 1.6E-08 69.7 10.2 103 48-173 119-222 (409)
194 PF13428 TPR_14: Tetratricopep 97.4 0.00011 2.4E-09 49.8 2.6 43 138-180 1-43 (44)
195 KOG1174 Anaphase-promoting com 97.4 0.00041 9E-09 68.4 7.3 105 48-175 267-371 (564)
196 COG4700 Uncharacterized protei 97.4 0.00057 1.2E-08 60.5 7.4 104 47-173 89-195 (251)
197 COG2956 Predicted N-acetylgluc 97.4 0.00056 1.2E-08 65.6 7.9 129 44-172 104-248 (389)
198 KOG2879 Predicted E3 ubiquitin 97.4 0.00023 4.9E-09 66.2 5.0 56 192-247 229-287 (298)
199 COG3118 Thioredoxin domain-con 97.4 0.00023 4.9E-09 67.7 5.1 156 7-172 91-270 (304)
200 PF13525 YfiO: Outer membrane 97.4 0.00097 2.1E-08 61.8 9.3 127 47-185 42-188 (203)
201 KOG1129 TPR repeat-containing 97.4 0.0004 8.6E-09 66.6 6.5 106 47-175 256-361 (478)
202 KOG1128 Uncharacterized conser 97.3 0.00047 1E-08 72.5 7.2 102 48-172 520-621 (777)
203 KOG1840 Kinesin light chain [C 97.3 0.0003 6.6E-09 73.3 5.5 100 46-168 198-313 (508)
204 PF12968 DUF3856: Domain of Un 97.3 0.0013 2.9E-08 53.7 7.7 98 46-166 8-128 (144)
205 PRK14720 transcript cleavage f 97.3 0.00059 1.3E-08 75.4 7.6 99 50-172 68-183 (906)
206 PF00515 TPR_1: Tetratricopept 97.3 0.00032 7E-09 44.5 3.4 34 47-80 1-34 (34)
207 KOG3785 Uncharacterized conser 97.2 0.00066 1.4E-08 65.7 6.6 124 53-176 63-223 (557)
208 PF13431 TPR_17: Tetratricopep 97.2 6.4E-05 1.4E-09 47.9 -0.3 29 69-97 1-29 (34)
209 PF14853 Fis1_TPR_C: Fis1 C-te 97.2 0.00044 9.6E-09 48.7 3.9 49 139-187 2-50 (53)
210 COG5222 Uncharacterized conser 97.2 0.0005 1.1E-08 64.3 5.3 68 200-268 272-341 (427)
211 PF07719 TPR_2: Tetratricopept 97.2 0.00064 1.4E-08 42.9 4.1 34 47-80 1-34 (34)
212 PF03704 BTAD: Bacterial trans 97.2 0.0031 6.7E-08 54.9 9.8 96 47-165 6-123 (146)
213 KOG1129 TPR repeat-containing 97.2 0.00056 1.2E-08 65.6 5.1 100 51-174 227-326 (478)
214 KOG0297 TNF receptor-associate 97.2 0.00026 5.6E-09 72.0 3.0 49 199-247 18-67 (391)
215 KOG4507 Uncharacterized conser 97.1 0.0012 2.7E-08 67.7 7.5 100 59-181 619-719 (886)
216 PRK10803 tol-pal system protei 97.1 0.00073 1.6E-08 65.0 5.6 59 121-179 160-221 (263)
217 PF13428 TPR_14: Tetratricopep 97.1 0.00035 7.6E-09 47.3 2.5 42 82-146 2-43 (44)
218 PF12895 Apc3: Anaphase-promot 97.1 0.00029 6.2E-09 55.2 2.3 61 46-130 24-84 (84)
219 KOG2003 TPR repeat-containing 97.1 0.0028 6.1E-08 63.2 9.6 105 46-173 557-661 (840)
220 PF04781 DUF627: Protein of un 97.1 0.0023 5E-08 52.1 7.4 103 53-167 2-107 (111)
221 KOG1840 Kinesin light chain [C 97.1 0.00083 1.8E-08 70.1 6.1 104 42-168 278-397 (508)
222 KOG1156 N-terminal acetyltrans 97.0 0.0027 5.8E-08 66.2 9.1 107 47-176 41-147 (700)
223 KOG0804 Cytoplasmic Zn-finger 97.0 0.00035 7.6E-09 69.3 2.1 49 196-246 169-221 (493)
224 PF12569 NARP1: NMDA receptor- 97.0 0.0033 7.2E-08 66.2 9.4 54 121-174 211-264 (517)
225 PF15015 NYD-SP12_N: Spermatog 96.9 0.0069 1.5E-07 60.1 10.4 96 46-164 175-288 (569)
226 COG4785 NlpI Lipoprotein NlpI, 96.9 0.0014 3E-08 59.6 5.1 51 47-97 99-149 (297)
227 PF13181 TPR_8: Tetratricopept 96.9 0.00052 1.1E-08 43.4 1.4 33 139-171 2-34 (34)
228 KOG2114 Vacuolar assembly/sort 96.9 0.0017 3.7E-08 69.3 5.9 46 198-246 836-882 (933)
229 KOG4555 TPR repeat-containing 96.8 0.0014 2.9E-08 54.8 4.1 52 121-172 60-111 (175)
230 PF13512 TPR_18: Tetratricopep 96.8 0.0041 8.9E-08 53.3 6.9 84 48-140 48-135 (142)
231 PF12688 TPR_5: Tetratrico pep 96.8 0.0034 7.3E-08 52.7 5.9 72 82-176 2-79 (120)
232 PF06552 TOM20_plant: Plant sp 96.8 0.001 2.3E-08 58.8 2.9 65 61-137 49-113 (186)
233 KOG1130 Predicted G-alpha GTPa 96.7 0.00088 1.9E-08 66.1 2.5 95 50-167 198-304 (639)
234 PF14938 SNAP: Soluble NSF att 96.7 0.0045 9.9E-08 60.5 7.3 109 45-176 112-234 (282)
235 KOG1785 Tyrosine kinase negati 96.7 0.0007 1.5E-08 65.9 1.4 44 204-247 371-416 (563)
236 KOG4151 Myosin assembly protei 96.7 0.0067 1.5E-07 64.8 8.6 121 42-185 48-174 (748)
237 PF04733 Coatomer_E: Coatomer 96.6 0.0056 1.2E-07 59.9 7.5 106 48-178 132-241 (290)
238 KOG4172 Predicted E3 ubiquitin 96.6 0.00037 7.9E-09 47.9 -0.6 44 203-246 8-53 (62)
239 KOG4692 Predicted E3 ubiquitin 96.6 0.0017 3.7E-08 62.3 3.2 53 194-246 414-466 (489)
240 PF04733 Coatomer_E: Coatomer 96.6 0.012 2.6E-07 57.5 9.3 92 62-176 182-274 (290)
241 KOG0376 Serine-threonine phosp 96.5 0.005 1.1E-07 62.3 6.3 86 50-158 41-128 (476)
242 KOG4265 Predicted E3 ubiquitin 96.5 0.0013 2.8E-08 63.9 2.0 45 202-246 290-335 (349)
243 PRK15331 chaperone protein Sic 96.5 0.017 3.6E-07 50.8 8.8 75 49-148 73-147 (165)
244 KOG4648 Uncharacterized conser 96.5 0.00051 1.1E-08 66.2 -0.9 113 49-185 236-348 (536)
245 KOG0495 HAT repeat protein [RN 96.5 0.015 3.2E-07 60.9 9.4 105 54-181 658-762 (913)
246 PF09295 ChAPs: ChAPs (Chs5p-A 96.4 0.012 2.7E-07 59.7 8.6 103 59-187 181-283 (395)
247 PRK10153 DNA-binding transcrip 96.4 0.0053 1.2E-07 64.9 6.2 70 48-141 421-490 (517)
248 COG1729 Uncharacterized protei 96.4 0.0058 1.3E-07 57.9 5.7 79 84-185 144-225 (262)
249 KOG1734 Predicted RING-contain 96.4 0.0028 6.2E-08 58.7 3.2 49 198-246 220-280 (328)
250 KOG1039 Predicted E3 ubiquitin 96.3 0.0023 4.9E-08 63.1 2.6 49 198-246 157-220 (344)
251 PF12569 NARP1: NMDA receptor- 96.3 0.015 3.3E-07 61.3 8.9 99 47-168 194-292 (517)
252 KOG2376 Signal recognition par 96.3 0.025 5.3E-07 58.7 10.0 114 48-172 13-144 (652)
253 KOG1002 Nucleotide excision re 96.2 0.0018 3.9E-08 65.3 1.3 50 198-247 532-586 (791)
254 COG5194 APC11 Component of SCF 96.1 0.0045 9.8E-08 46.3 2.5 29 219-247 53-81 (88)
255 smart00028 TPR Tetratricopepti 96.1 0.0087 1.9E-07 36.1 3.6 33 139-171 2-34 (34)
256 PF13174 TPR_6: Tetratricopept 96.0 0.0064 1.4E-07 37.8 2.7 33 139-171 1-33 (33)
257 KOG0545 Aryl-hydrocarbon recep 96.0 0.031 6.7E-07 51.9 7.9 76 50-148 233-308 (329)
258 COG5219 Uncharacterized conser 96.0 0.0041 9E-08 66.9 2.6 51 197-247 1464-1523(1525)
259 PF13181 TPR_8: Tetratricopept 95.9 0.0096 2.1E-07 37.4 3.3 33 47-79 1-33 (34)
260 KOG4340 Uncharacterized conser 95.9 0.011 2.4E-07 56.3 5.0 95 46-163 143-266 (459)
261 KOG4340 Uncharacterized conser 95.9 0.061 1.3E-06 51.4 9.5 105 57-188 20-124 (459)
262 PRK10941 hypothetical protein; 95.8 0.015 3.2E-07 56.1 5.6 75 84-181 184-258 (269)
263 KOG2376 Signal recognition par 95.8 0.066 1.4E-06 55.6 10.4 110 51-167 83-204 (652)
264 KOG4367 Predicted Zn-finger pr 95.7 0.0055 1.2E-07 60.4 2.0 35 201-235 3-37 (699)
265 KOG1571 Predicted E3 ubiquitin 95.6 0.0071 1.5E-07 58.9 2.5 48 196-246 299-346 (355)
266 KOG3785 Uncharacterized conser 95.6 0.062 1.3E-06 52.5 8.8 89 54-165 29-118 (557)
267 PF14447 Prok-RING_4: Prokaryo 95.6 0.0061 1.3E-07 42.5 1.4 45 201-247 6-50 (55)
268 PF14938 SNAP: Soluble NSF att 95.6 0.014 3E-07 57.1 4.3 104 42-169 30-146 (282)
269 KOG0828 Predicted E3 ubiquitin 95.6 0.0051 1.1E-07 61.8 1.2 49 199-247 568-634 (636)
270 COG2976 Uncharacterized protei 95.5 0.071 1.5E-06 48.0 8.2 101 47-172 89-193 (207)
271 COG0457 NrfG FOG: TPR repeat [ 95.5 0.13 2.8E-06 46.3 10.5 99 49-170 97-199 (291)
272 PRK10941 hypothetical protein; 95.5 0.052 1.1E-06 52.3 8.0 76 50-148 184-259 (269)
273 KOG3824 Huntingtin interacting 95.4 0.046 1E-06 52.3 6.9 82 43-147 112-193 (472)
274 KOG4739 Uncharacterized protei 95.3 0.0086 1.9E-07 55.3 1.8 60 204-269 5-66 (233)
275 PF13176 TPR_7: Tetratricopept 95.3 0.0051 1.1E-07 39.6 0.2 28 140-167 1-28 (36)
276 COG0457 NrfG FOG: TPR repeat [ 95.3 0.092 2E-06 47.3 8.7 101 47-170 59-162 (291)
277 KOG3364 Membrane protein invol 95.2 0.063 1.4E-06 45.3 6.5 71 118-188 49-121 (149)
278 KOG0551 Hsp90 co-chaperone CNS 95.2 0.089 1.9E-06 51.1 8.3 68 47-137 119-186 (390)
279 smart00744 RINGv The RING-vari 95.1 0.015 3.3E-07 40.2 2.1 40 204-243 1-49 (49)
280 KOG0825 PHD Zn-finger protein 95.1 0.0048 1E-07 65.2 -0.7 47 200-246 121-170 (1134)
281 PF11793 FANCL_C: FANCL C-term 95.0 0.0045 9.7E-08 46.5 -0.8 46 202-247 2-66 (70)
282 PF14561 TPR_20: Tetratricopep 95.0 0.089 1.9E-06 41.7 6.6 61 121-181 5-67 (90)
283 COG4105 ComL DNA uptake lipopr 95.0 0.2 4.2E-06 47.3 9.8 125 48-187 72-216 (254)
284 COG3071 HemY Uncharacterized e 95.0 0.068 1.5E-06 53.0 6.9 98 50-173 266-363 (400)
285 COG4976 Predicted methyltransf 94.9 0.023 4.9E-07 52.3 3.1 53 121-173 12-64 (287)
286 KOG0826 Predicted E3 ubiquitin 94.9 0.019 4.1E-07 55.1 2.6 49 198-246 296-345 (357)
287 KOG1130 Predicted G-alpha GTPa 94.8 0.055 1.2E-06 53.9 5.8 97 48-167 236-344 (639)
288 KOG3824 Huntingtin interacting 94.8 0.11 2.4E-06 49.8 7.6 56 121-176 133-188 (472)
289 KOG1645 RING-finger-containing 94.8 0.015 3.3E-07 57.2 1.9 45 202-246 4-55 (463)
290 KOG1493 Anaphase-promoting com 94.7 0.0098 2.1E-07 44.1 0.4 44 203-246 32-80 (84)
291 PF06957 COPI_C: Coatomer (COP 94.7 0.2 4.4E-06 51.0 9.7 186 45-245 202-405 (422)
292 KOG2796 Uncharacterized conser 94.6 0.098 2.1E-06 49.2 6.5 99 51-172 216-320 (366)
293 KOG3800 Predicted E3 ubiquitin 94.6 0.027 5.9E-07 53.2 2.9 44 204-247 2-51 (300)
294 smart00028 TPR Tetratricopepti 94.5 0.066 1.4E-06 31.9 3.9 32 48-79 2-33 (34)
295 PF14853 Fis1_TPR_C: Fis1 C-te 94.5 0.069 1.5E-06 37.6 4.2 42 83-147 3-44 (53)
296 KOG4642 Chaperone-dependent E3 94.5 0.036 7.8E-07 51.3 3.5 59 121-179 27-85 (284)
297 KOG4814 Uncharacterized conser 94.4 0.15 3.3E-06 53.4 8.2 96 48-166 355-456 (872)
298 KOG2610 Uncharacterized conser 94.4 0.2 4.4E-06 48.7 8.5 107 52-181 108-218 (491)
299 COG3071 HemY Uncharacterized e 94.4 0.32 7E-06 48.4 10.1 116 42-180 79-195 (400)
300 KOG2930 SCF ubiquitin ligase, 94.3 0.021 4.6E-07 45.0 1.3 28 219-246 80-107 (114)
301 PF13176 TPR_7: Tetratricopept 94.2 0.052 1.1E-06 34.8 2.9 27 50-76 2-28 (36)
302 KOG0827 Predicted E3 ubiquitin 94.2 0.022 4.7E-07 55.8 1.5 45 202-246 4-55 (465)
303 KOG2471 TPR repeat-containing 94.2 0.11 2.3E-06 52.9 6.3 111 47-180 240-377 (696)
304 KOG1001 Helicase-like transcri 94.1 0.061 1.3E-06 58.4 4.7 43 203-246 455-499 (674)
305 PF10300 DUF3808: Protein of u 94.1 0.15 3.2E-06 53.6 7.6 97 47-167 267-376 (468)
306 KOG1586 Protein required for f 94.0 0.43 9.4E-06 44.3 9.3 116 48-186 114-245 (288)
307 PF14570 zf-RING_4: RING/Ubox 94.0 0.044 9.6E-07 37.4 2.2 41 205-245 1-46 (48)
308 PLN03081 pentatricopeptide (PP 94.0 0.13 2.9E-06 57.0 7.4 42 121-162 511-552 (697)
309 KOG2053 Mitochondrial inherita 93.8 0.15 3.3E-06 55.4 7.0 91 57-170 19-109 (932)
310 PF03704 BTAD: Bacterial trans 93.5 0.13 2.9E-06 44.5 5.2 62 48-132 63-124 (146)
311 KOG2796 Uncharacterized conser 93.5 0.55 1.2E-05 44.4 9.2 67 49-138 254-320 (366)
312 KOG2396 HAT (Half-A-TPR) repea 93.5 0.29 6.3E-06 50.1 8.0 91 65-178 89-180 (568)
313 KOG4185 Predicted E3 ubiquitin 93.4 0.062 1.3E-06 52.9 3.2 64 202-265 3-76 (296)
314 PF13174 TPR_6: Tetratricopept 93.4 0.12 2.6E-06 31.8 3.5 32 49-80 2-33 (33)
315 PLN03077 Protein ECB2; Provisi 93.1 0.37 7.9E-06 54.9 9.2 88 51-163 629-716 (857)
316 KOG3161 Predicted E3 ubiquitin 93.0 0.043 9.4E-07 57.1 1.4 39 200-240 9-51 (861)
317 PF10579 Rapsyn_N: Rapsyn N-te 92.9 0.43 9.3E-06 36.4 6.2 53 45-97 4-59 (80)
318 PF04641 Rtf2: Rtf2 RING-finge 92.8 0.096 2.1E-06 50.4 3.3 49 198-247 109-161 (260)
319 KOG2610 Uncharacterized conser 92.8 0.42 9.1E-06 46.6 7.5 100 42-164 132-235 (491)
320 KOG2817 Predicted E3 ubiquitin 92.7 2.4 5.2E-05 42.3 12.8 48 199-246 331-384 (394)
321 COG5191 Uncharacterized conser 92.6 0.14 2.9E-06 49.4 4.0 91 66-179 92-183 (435)
322 KOG4445 Uncharacterized conser 92.5 0.076 1.7E-06 50.3 2.1 49 198-246 111-185 (368)
323 KOG3039 Uncharacterized conser 92.4 0.11 2.4E-06 47.8 3.0 48 200-247 219-270 (303)
324 COG4976 Predicted methyltransf 92.4 0.14 3.1E-06 47.2 3.6 61 55-138 3-63 (287)
325 COG2912 Uncharacterized conser 92.3 0.22 4.8E-06 47.4 4.9 61 121-181 198-258 (269)
326 KOG4275 Predicted E3 ubiquitin 92.1 0.085 1.8E-06 49.8 1.9 41 202-246 300-341 (350)
327 PF05843 Suf: Suppressor of fo 91.9 0.87 1.9E-05 44.3 9.0 100 50-172 4-104 (280)
328 COG5236 Uncharacterized conser 91.8 0.12 2.7E-06 49.8 2.7 47 199-245 58-106 (493)
329 KOG3970 Predicted E3 ubiquitin 91.7 0.22 4.7E-06 45.2 3.9 48 201-248 49-106 (299)
330 COG2912 Uncharacterized conser 91.7 0.6 1.3E-05 44.5 7.1 73 53-148 187-259 (269)
331 KOG2053 Mitochondrial inherita 91.7 0.99 2.1E-05 49.4 9.5 141 47-215 43-184 (932)
332 PF10367 Vps39_2: Vacuolar sor 91.6 0.34 7.3E-06 39.6 4.9 32 199-230 75-108 (109)
333 KOG1585 Protein required for f 91.6 1.1 2.4E-05 41.9 8.5 110 46-178 30-150 (308)
334 PF05290 Baculo_IE-1: Baculovi 91.5 0.21 4.5E-06 41.7 3.4 47 201-247 79-132 (140)
335 KOG1915 Cell cycle control pro 91.4 1.1 2.4E-05 45.8 8.9 100 50-172 76-175 (677)
336 PF10602 RPN7: 26S proteasome 91.4 1.5 3.3E-05 39.5 9.2 96 47-165 36-140 (177)
337 KOG0292 Vesicle coat complex C 91.4 2.2 4.7E-05 46.8 11.5 192 44-245 988-1189(1202)
338 KOG1941 Acetylcholine receptor 91.1 1.4 3.1E-05 43.5 9.2 103 46-171 5-116 (518)
339 PF13281 DUF4071: Domain of un 91.1 1.6 3.5E-05 43.9 9.9 146 22-181 150-348 (374)
340 PF14561 TPR_20: Tetratricopep 91.0 0.56 1.2E-05 37.1 5.3 65 66-153 7-73 (90)
341 PF09986 DUF2225: Uncharacteri 91.0 0.68 1.5E-05 43.1 6.7 101 56-172 86-199 (214)
342 PF04184 ST7: ST7 protein; In 91.0 1.1 2.3E-05 46.3 8.4 92 56-170 177-291 (539)
343 KOG1308 Hsp70-interacting prot 90.9 0.16 3.4E-06 49.7 2.4 67 46-135 147-213 (377)
344 COG5175 MOT2 Transcriptional r 90.9 0.12 2.5E-06 49.8 1.6 45 201-246 14-63 (480)
345 PRK04841 transcriptional regul 90.3 0.69 1.5E-05 52.9 7.5 95 50-167 455-560 (903)
346 KOG3364 Membrane protein invol 90.2 1.3 2.9E-05 37.5 7.0 64 61-147 49-114 (149)
347 cd02682 MIT_AAA_Arch MIT: doma 90.2 3.7 8.1E-05 31.1 8.8 31 45-75 4-34 (75)
348 KOG3002 Zn finger protein [Gen 90.2 0.23 4.9E-06 48.5 2.9 61 197-265 43-104 (299)
349 PLN03081 pentatricopeptide (PP 89.9 0.87 1.9E-05 50.5 7.7 94 49-166 292-388 (697)
350 KOG1585 Protein required for f 89.7 2.3 4.9E-05 40.0 8.7 104 46-172 109-224 (308)
351 KOG3081 Vesicle coat complex C 89.6 1.9 4.2E-05 40.9 8.3 98 56-174 146-243 (299)
352 COG4700 Uncharacterized protei 89.5 3.1 6.7E-05 37.5 9.1 94 46-163 123-218 (251)
353 PF10300 DUF3808: Protein of u 89.5 0.83 1.8E-05 48.0 6.7 87 60-169 246-336 (468)
354 PRK04841 transcriptional regul 89.3 0.8 1.7E-05 52.4 7.0 99 48-169 492-604 (903)
355 KOG1915 Cell cycle control pro 89.2 2.1 4.5E-05 43.9 8.7 107 58-190 377-489 (677)
356 KOG0298 DEAD box-containing he 89.0 0.11 2.3E-06 58.7 -0.3 48 199-246 1150-1198(1394)
357 COG3914 Spy Predicted O-linked 88.8 1.9 4E-05 45.3 8.4 101 53-175 73-179 (620)
358 PF09613 HrpB1_HrpK: Bacterial 88.8 2.4 5.2E-05 37.2 7.9 100 46-169 9-108 (160)
359 KOG1814 Predicted E3 ubiquitin 88.8 0.23 5E-06 49.4 1.7 47 199-245 181-238 (445)
360 PLN03218 maturation of RBCL 1; 88.4 1.6 3.4E-05 50.5 8.5 41 57-97 589-630 (1060)
361 PLN03218 maturation of RBCL 1; 88.4 1.6 3.5E-05 50.4 8.5 91 53-167 548-643 (1060)
362 PF02259 FAT: FAT domain; Int 88.3 2.8 6.1E-05 41.8 9.5 113 48-170 185-341 (352)
363 PF10516 SHNi-TPR: SHNi-TPR; 87.7 0.39 8.4E-06 31.2 1.8 29 139-167 2-30 (38)
364 PF05843 Suf: Suppressor of fo 87.7 1.5 3.2E-05 42.8 6.7 109 48-179 36-148 (280)
365 PF07079 DUF1347: Protein of u 87.6 6.6 0.00014 40.2 11.0 137 42-187 374-545 (549)
366 PF13374 TPR_10: Tetratricopep 87.4 0.43 9.2E-06 31.0 1.9 29 139-167 3-31 (42)
367 KOG0530 Protein farnesyltransf 87.1 4.3 9.3E-05 38.5 8.8 94 58-173 54-148 (318)
368 PF03854 zf-P11: P-11 zinc fin 86.5 0.36 7.8E-06 32.5 1.1 42 204-247 4-46 (50)
369 KOG3081 Vesicle coat complex C 86.4 4.6 0.0001 38.4 8.7 89 61-172 187-276 (299)
370 PF02259 FAT: FAT domain; Int 85.8 6.1 0.00013 39.3 10.3 120 45-187 144-307 (352)
371 PRK13184 pknD serine/threonine 85.6 4.6 0.0001 45.8 9.8 115 50-181 478-595 (932)
372 KOG3039 Uncharacterized conser 85.3 0.46 1E-05 43.9 1.6 33 201-233 42-74 (303)
373 KOG1586 Protein required for f 84.8 6.5 0.00014 36.7 8.7 53 121-173 131-189 (288)
374 PF07721 TPR_4: Tetratricopept 84.8 1.2 2.5E-05 26.1 2.7 25 139-163 2-26 (26)
375 KOG2042 Ubiquitin fusion degra 84.7 1.9 4.1E-05 48.1 6.2 72 197-270 865-937 (943)
376 PF07720 TPR_3: Tetratricopept 84.6 1 2.2E-05 28.9 2.5 33 139-171 2-36 (36)
377 PLN03077 Protein ECB2; Provisi 84.2 3.9 8.5E-05 46.6 8.9 97 48-170 555-656 (857)
378 KOG4507 Uncharacterized conser 84.2 1.3 2.9E-05 46.3 4.4 91 59-172 225-317 (886)
379 PF13374 TPR_10: Tetratricopep 84.1 1.6 3.6E-05 28.1 3.6 30 47-76 2-31 (42)
380 KOG2932 E3 ubiquitin ligase in 83.8 0.52 1.1E-05 45.0 1.3 41 204-246 92-133 (389)
381 COG3629 DnrI DNA-binding trans 83.6 1.6 3.4E-05 42.2 4.5 63 82-167 154-216 (280)
382 PF10516 SHNi-TPR: SHNi-TPR; 83.5 1.5 3.2E-05 28.5 2.9 28 49-76 3-30 (38)
383 KOG4362 Transcriptional regula 83.4 0.52 1.1E-05 50.5 1.2 46 201-246 20-68 (684)
384 PF08746 zf-RING-like: RING-li 83.2 1.4 3.1E-05 29.4 2.9 38 205-242 1-43 (43)
385 COG3947 Response regulator con 82.5 2.7 5.8E-05 40.5 5.4 72 23-97 258-329 (361)
386 TIGR02561 HrpB1_HrpK type III 80.9 15 0.00032 31.9 8.9 97 47-167 10-106 (153)
387 KOG1812 Predicted E3 ubiquitin 80.5 4.5 9.7E-05 41.3 6.7 36 199-234 143-182 (384)
388 KOG0546 HSP90 co-chaperone CPR 80.2 1.7 3.6E-05 42.9 3.3 71 54-147 282-352 (372)
389 PF02891 zf-MIZ: MIZ/SP-RING z 80.2 1.1 2.4E-05 31.1 1.6 41 203-244 3-49 (50)
390 PF04212 MIT: MIT (microtubule 80.2 3.2 6.9E-05 30.8 4.2 32 45-76 3-34 (69)
391 PF04184 ST7: ST7 protein; In 80.1 7.3 0.00016 40.4 7.9 59 83-164 261-321 (539)
392 PF07079 DUF1347: Protein of u 80.1 8.4 0.00018 39.4 8.2 81 47-152 462-542 (549)
393 cd02683 MIT_1 MIT: domain cont 79.8 25 0.00053 26.8 9.5 31 45-75 4-34 (77)
394 KOG1070 rRNA processing protei 79.6 6.3 0.00014 45.7 7.9 86 61-170 1511-1596(1710)
395 KOG1940 Zn-finger protein [Gen 79.5 1.1 2.4E-05 42.9 1.8 45 200-244 156-204 (276)
396 PF08631 SPO22: Meiosis protei 79.5 13 0.00029 36.0 9.5 108 41-168 29-151 (278)
397 PF07720 TPR_3: Tetratricopept 79.4 4.4 9.5E-05 25.9 4.0 33 48-80 2-36 (36)
398 PF12862 Apc5: Anaphase-promot 79.3 2.5 5.5E-05 33.6 3.6 52 121-172 15-75 (94)
399 COG5220 TFB3 Cdk activating ki 78.8 0.5 1.1E-05 43.4 -0.7 46 201-246 9-63 (314)
400 KOG2034 Vacuolar sorting prote 78.7 0.96 2.1E-05 49.5 1.3 35 199-233 814-850 (911)
401 KOG0530 Protein farnesyltransf 78.5 5.1 0.00011 38.0 5.8 92 62-176 93-185 (318)
402 PF12862 Apc5: Anaphase-promot 77.9 4.1 8.9E-05 32.3 4.5 58 55-135 6-72 (94)
403 PF13281 DUF4071: Domain of un 77.6 8.2 0.00018 39.0 7.4 53 119-171 197-259 (374)
404 PF08424 NRDE-2: NRDE-2, neces 77.2 6 0.00013 39.3 6.4 101 67-178 5-105 (321)
405 cd02681 MIT_calpain7_1 MIT: do 76.6 4.5 9.7E-05 30.8 4.0 33 44-76 3-35 (76)
406 PF14863 Alkyl_sulf_dimr: Alky 76.0 3.9 8.4E-05 35.3 4.0 51 47-97 70-120 (141)
407 COG3914 Spy Predicted O-linked 75.1 12 0.00026 39.6 7.9 96 58-176 41-140 (620)
408 COG3898 Uncharacterized membra 75.0 4.3 9.4E-05 40.7 4.5 52 121-172 246-297 (531)
409 TIGR03504 FimV_Cterm FimV C-te 74.9 3.3 7.1E-05 27.9 2.6 31 141-172 2-32 (44)
410 cd02682 MIT_AAA_Arch MIT: doma 74.0 9.3 0.0002 29.0 5.1 57 121-185 4-60 (75)
411 COG5191 Uncharacterized conser 73.8 7.9 0.00017 37.7 5.8 76 44-142 104-180 (435)
412 PF05883 Baculo_RING: Baculovi 73.7 2 4.4E-05 36.3 1.7 44 202-245 26-78 (134)
413 PF06906 DUF1272: Protein of u 73.6 3 6.5E-05 29.3 2.2 29 219-249 26-54 (57)
414 PHA03096 p28-like protein; Pro 73.6 1.5 3.3E-05 42.4 1.1 42 203-244 179-231 (284)
415 KOG0686 COP9 signalosome, subu 72.8 14 0.0003 37.4 7.4 94 48-164 151-255 (466)
416 KOG1428 Inhibitor of type V ad 72.7 3.6 7.8E-05 47.5 3.7 49 198-246 3482-3543(3738)
417 PF13240 zinc_ribbon_2: zinc-r 72.2 1 2.2E-05 25.7 -0.3 22 224-245 1-22 (23)
418 PF07800 DUF1644: Protein of u 72.1 3.3 7.2E-05 35.9 2.6 19 201-219 1-19 (162)
419 PHA02537 M terminase endonucle 71.8 18 0.00039 34.0 7.6 115 58-187 94-226 (230)
420 KOG2471 TPR repeat-containing 71.0 3.9 8.5E-05 42.1 3.2 78 50-150 286-381 (696)
421 PRK04023 DNA polymerase II lar 70.9 2.8 6.2E-05 46.8 2.4 62 199-265 623-689 (1121)
422 COG4941 Predicted RNA polymera 70.8 16 0.00036 35.9 7.2 88 68-179 317-406 (415)
423 KOG2066 Vacuolar assembly/sort 70.2 5.6 0.00012 43.2 4.3 41 202-243 784-831 (846)
424 KOG2047 mRNA splicing factor [ 69.8 74 0.0016 34.4 12.1 117 47-186 425-559 (835)
425 KOG0529 Protein geranylgeranyl 69.1 13 0.00029 37.6 6.4 104 59-183 87-194 (421)
426 cd02680 MIT_calpain7_2 MIT: do 69.1 7.2 0.00016 29.6 3.6 32 45-76 4-35 (75)
427 COG3629 DnrI DNA-binding trans 68.9 12 0.00025 36.3 5.9 64 47-133 153-216 (280)
428 COG3947 Response regulator con 68.8 6.3 0.00014 38.0 3.9 43 121-163 296-338 (361)
429 PF10579 Rapsyn_N: Rapsyn N-te 68.7 24 0.00051 27.1 6.2 43 121-163 23-68 (80)
430 PF10373 EST1_DNA_bind: Est1 D 68.1 9.3 0.0002 36.7 5.3 59 123-181 1-59 (278)
431 PRK15180 Vi polysaccharide bio 67.8 39 0.00084 35.0 9.4 104 46-172 288-391 (831)
432 cd02678 MIT_VPS4 MIT: domain c 66.0 55 0.0012 24.6 9.8 32 44-75 3-34 (75)
433 COG4455 ImpE Protein of avirul 65.4 24 0.00052 32.8 6.8 61 121-181 18-78 (273)
434 COG3813 Uncharacterized protei 65.2 4.5 9.7E-05 29.9 1.7 28 219-248 26-53 (84)
435 cd02677 MIT_SNX15 MIT: domain 64.9 11 0.00023 28.7 3.8 33 44-76 3-35 (75)
436 smart00745 MIT Microtubule Int 64.8 57 0.0012 24.5 9.7 32 44-75 5-36 (77)
437 cd02679 MIT_spastin MIT: domai 64.7 11 0.00025 28.8 4.0 35 42-76 3-37 (79)
438 KOG4814 Uncharacterized conser 64.6 16 0.00036 39.0 6.3 70 81-173 354-429 (872)
439 PF10255 Paf67: RNA polymerase 64.5 8.4 0.00018 39.4 4.1 32 135-166 161-192 (404)
440 cd02684 MIT_2 MIT: domain cont 64.3 12 0.00025 28.5 3.9 32 45-76 4-35 (75)
441 PHA02825 LAP/PHD finger-like p 64.2 6.4 0.00014 34.3 2.8 45 201-246 7-58 (162)
442 PF14863 Alkyl_sulf_dimr: Alky 64.1 14 0.0003 31.9 4.9 36 121-156 87-122 (141)
443 COG3898 Uncharacterized membra 63.2 26 0.00056 35.4 7.0 92 50-166 123-216 (531)
444 cd02656 MIT MIT: domain contai 62.9 15 0.00031 27.7 4.3 32 45-76 4-35 (75)
445 COG4455 ImpE Protein of avirul 62.9 68 0.0015 29.9 9.1 63 54-139 8-70 (273)
446 PHA02862 5L protein; Provision 62.0 6.2 0.00013 33.7 2.2 44 203-247 3-53 (156)
447 KOG1550 Extracellular protein 61.8 18 0.0004 38.9 6.4 88 59-166 261-356 (552)
448 PF07191 zinc-ribbons_6: zinc- 60.9 1.3 2.9E-05 32.8 -1.6 39 203-246 2-40 (70)
449 KOG2396 HAT (Half-A-TPR) repea 60.0 28 0.00061 36.3 6.8 62 57-141 114-177 (568)
450 PF10373 EST1_DNA_bind: Est1 D 59.6 15 0.00033 35.2 5.0 62 66-150 1-62 (278)
451 KOG3899 Uncharacterized conser 59.5 4.3 9.4E-05 38.6 1.0 27 220-246 325-364 (381)
452 KOG2561 Adaptor protein NUB1, 59.3 43 0.00093 34.3 7.8 104 46-166 162-295 (568)
453 KOG3617 WD40 and TPR repeat-co 57.9 32 0.0007 38.0 7.1 32 135-166 964-995 (1416)
454 PF09986 DUF2225: Uncharacteri 57.8 33 0.00073 31.8 6.6 65 50-137 128-198 (214)
455 KOG1100 Predicted E3 ubiquitin 57.7 5 0.00011 37.1 1.1 38 205-246 161-199 (207)
456 PF08424 NRDE-2: NRDE-2, neces 57.3 25 0.00054 34.9 6.1 80 62-166 46-130 (321)
457 KOG4563 Cell cycle-regulated h 57.2 15 0.00033 36.5 4.4 57 41-97 35-99 (400)
458 KOG3579 Predicted E3 ubiquitin 56.6 5.3 0.00012 37.9 1.1 36 199-234 265-304 (352)
459 KOG0309 Conserved WD40 repeat- 56.5 6.1 0.00013 42.6 1.6 41 201-241 1027-1069(1081)
460 PF12906 RINGv: RING-variant d 55.5 9.1 0.0002 26.1 1.8 38 205-242 1-47 (47)
461 KOG2047 mRNA splicing factor [ 54.9 71 0.0015 34.5 8.9 97 50-169 480-581 (835)
462 cd02683 MIT_1 MIT: domain cont 54.6 32 0.00069 26.2 4.9 46 121-174 4-49 (77)
463 KOG2041 WD40 repeat protein [G 54.2 73 0.0016 34.7 8.9 84 46-164 795-878 (1189)
464 KOG1070 rRNA processing protei 53.6 61 0.0013 38.1 8.7 109 49-180 1532-1642(1710)
465 PRK15180 Vi polysaccharide bio 53.5 22 0.00049 36.7 4.9 96 52-170 328-423 (831)
466 KOG0985 Vesicle coat protein c 53.3 40 0.00086 38.3 7.0 92 48-170 1195-1311(1666)
467 PF09613 HrpB1_HrpK: Bacterial 53.1 51 0.0011 29.1 6.5 58 121-178 27-84 (160)
468 KOG4718 Non-SMC (structural ma 53.0 7.1 0.00015 35.5 1.3 43 202-244 181-224 (235)
469 smart00386 HAT HAT (Half-A-TPR 53.0 9.3 0.0002 22.7 1.5 28 61-88 1-28 (33)
470 COG5109 Uncharacterized conser 52.2 9.5 0.00021 36.9 2.0 47 199-245 333-385 (396)
471 KOG1815 Predicted E3 ubiquitin 52.2 7.7 0.00017 40.5 1.6 37 198-234 66-103 (444)
472 PF12968 DUF3856: Domain of Un 52.0 31 0.00067 28.8 4.6 46 121-166 26-83 (144)
473 KOG0529 Protein geranylgeranyl 51.9 1.5E+02 0.0033 30.2 10.4 160 53-234 34-197 (421)
474 KOG3113 Uncharacterized conser 50.6 24 0.00052 33.1 4.2 45 200-246 109-157 (293)
475 PF13226 DUF4034: Domain of un 50.5 2E+02 0.0044 27.9 10.8 112 53-181 6-142 (277)
476 PF10272 Tmpp129: Putative tra 50.0 9.3 0.0002 38.3 1.7 24 223-246 314-350 (358)
477 KOG2581 26S proteasome regulat 50.0 36 0.00079 34.5 5.7 37 136-172 245-281 (493)
478 PF04910 Tcf25: Transcriptiona 49.9 43 0.00093 33.9 6.5 76 74-172 33-138 (360)
479 KOG3268 Predicted E3 ubiquitin 49.7 9.1 0.0002 33.7 1.3 46 202-247 165-228 (234)
480 COG5091 SGT1 Suppressor of G2 49.7 81 0.0018 30.2 7.6 120 54-187 2-127 (368)
481 PF13248 zf-ribbon_3: zinc-rib 49.5 4.9 0.00011 23.5 -0.2 10 236-245 16-25 (26)
482 KOG2113 Predicted RNA binding 49.3 16 0.00035 35.3 3.0 48 197-246 338-386 (394)
483 PF11207 DUF2989: Protein of u 49.1 49 0.0011 30.4 5.9 70 64-157 123-197 (203)
484 KOG1310 WD40 repeat protein [G 48.9 26 0.00056 36.7 4.6 65 50-137 411-478 (758)
485 PF06844 DUF1244: Protein of u 48.1 8.7 0.00019 28.0 0.8 12 223-234 11-22 (68)
486 KOG4056 Translocase of outer m 47.9 37 0.00079 28.9 4.5 49 35-83 69-117 (143)
487 KOG2979 Protein involved in DN 47.7 15 0.00033 34.6 2.5 45 201-245 175-222 (262)
488 PF07219 HemY_N: HemY protein 47.2 31 0.00067 28.1 4.1 44 42-85 54-97 (108)
489 PF05605 zf-Di19: Drought indu 47.0 12 0.00026 26.2 1.4 37 202-245 2-40 (54)
490 KOG1839 Uncharacterized protei 46.9 22 0.00047 41.2 4.1 122 18-167 908-1044(1236)
491 COG5183 SSM4 Protein involved 46.9 25 0.00055 38.5 4.3 66 201-266 11-92 (1175)
492 PF02064 MAS20: MAS20 protein 46.4 46 0.001 27.8 5.0 34 48-81 64-97 (121)
493 PF09723 Zn-ribbon_8: Zinc rib 46.3 6.6 0.00014 26.0 -0.0 26 218-244 9-34 (42)
494 PF04781 DUF627: Protein of un 46.2 94 0.002 25.6 6.6 64 87-173 2-79 (111)
495 PF04053 Coatomer_WDAD: Coatom 45.9 77 0.0017 33.1 7.7 42 48-97 348-389 (443)
496 COG0790 FOG: TPR repeat, SEL1 45.7 68 0.0015 31.0 7.1 103 49-169 111-222 (292)
497 PF04910 Tcf25: Transcriptiona 45.7 50 0.0011 33.4 6.2 34 48-81 104-138 (360)
498 KOG3617 WD40 and TPR repeat-co 45.1 60 0.0013 36.1 6.7 25 140-164 860-884 (1416)
499 smart00745 MIT Microtubule Int 44.9 55 0.0012 24.6 5.0 45 120-172 5-49 (77)
500 COG3118 Thioredoxin domain-con 44.6 36 0.00079 33.0 4.6 44 121-164 151-194 (304)
No 1
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.94 E-value=6e-26 Score=246.79 Aligned_cols=193 Identities=17% Similarity=0.243 Sum_probs=162.1
Q ss_pred ccccceee--eccCCCccCccccchhHHHHHHHHHhCCceEEEEEeCC------CCCccccccceEEEEEeeecCCceEE
Q 011050 288 LMPLFVMD--VVIPCQRFPLHIFEPRYRLMVRRIMEGNHRMGMVIIDP------TTGSVADFACEVEITECEPLPDGRFV 359 (494)
Q Consensus 288 ~lPl~~l~--v~fP~~~~pl~i~~~~~~~~~~~~~~~~~~~~v~~~~~------~~~~~~~iG~~~~I~~~~~~~dg~~~ 359 (494)
.+|+||++ |+|||+.+||+||+++|+.|+++++.+++.||++++.+ ...++|.|||+|+|.++.+++||++.
T Consensus 10 ~LPLfPLr~~VLFPg~~lPL~Ife~R~i~~Ve~al~~~~~~gvv~~k~~~~~~p~~~dLy~VGtla~I~~~~~l~DG~~~ 89 (784)
T PRK10787 10 EIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHDKKIMLVAQKEASTDEPGVNDLFTVGTVASILQMLKLPDGTVK 89 (784)
T ss_pred eEEEEECCCceeCCCceeeeecCCHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcccccCccEEEEEEEeeECCCCeEE
Confidence 59999997 99999999999999999999999999999999999843 22478999999999999999999999
Q ss_pred EEEEeccceEEeeeecCCCeeEEEEEEecCCCCCCcccHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhcC
Q 011050 360 LEIESRRRFRILRSWDQDGYRVAEIEWVQDIHPEGVEDRADLQDLTNNAAEYARLWLRREKESARQDRRRLEKLLNVEVM 439 (494)
Q Consensus 360 v~~~g~~R~~i~~~~~~~~~~~a~ve~l~d~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 439 (494)
|.++|.+||+|.++.+.+||+.|+|+++++...+ ..+..++.+.+.+.+.++.......+. +....
T Consensus 90 Ilv~Gl~RfrI~~~~~~~py~~A~Ve~l~~~~~~----~~e~~al~~~ll~~~~~~~~l~~~~~~-------e~~~~--- 155 (784)
T PRK10787 90 VLVEGLQRARISALSDNGEHFSAKAEYLESPTID----EREQEVLVRTAISQFEGYIKLNKKIPP-------EVLTS--- 155 (784)
T ss_pred EEEEEEEEEEEEEEEcCCCCEEEEEEEecCCCCC----chHHHHHHHHHHHHHHHHHHhcccCCH-------HHHhh---
Confidence 9999999999999988999999999999874322 133456666677777777665443322 11111
Q ss_pred CCCCCCcchhHHHHHhcCCCChHHHhhhccCCCHHHHHHHHHHHHHhhhccccCC
Q 011050 440 MPPSQDPERFSFWLATLSDRRPSERLELLRIRDTRERIRRGLIFLRAEEQGCRLQ 494 (494)
Q Consensus 440 ~~~~~~~~~l~~~ia~~l~l~~~~kq~LLe~~d~~~Rl~~l~~~L~~~~~~~~~~ 494 (494)
....+||++++|++|++++++.++||+|||+.|+.+|+++++.+|+++++...+|
T Consensus 156 ~~~~ddp~~Lad~iA~~Lpl~~~eKQ~LLE~~d~~eRLe~Ll~lL~~Eleil~l~ 210 (784)
T PRK10787 156 LNSIDDPARLADTIAAHMPLKLADKQSVLEMSDVNERLEYLMAMMESEIDLLQVE 210 (784)
T ss_pred hhccccHHHHHHHHHHHCCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457899999999999999999999999999999999999999999988765543
No 2
>PF02190 LON: ATP-dependent protease La (LON) domain; InterPro: IPR003111 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This signature defines the N-terminal domain of the archael, bacterial and eukaryotic lon proteases, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SF). In the eukaryotes the majority of the proteins are located in the mitochondrial matrix [, ]. In yeast, Pim1, is located in the mitochondrial matrix, is required for mitochondrial function, is constitutively expressed but is increased after thermal stress, suggesting that Pim1 may play a role in the heat shock response [].; GO: 0004176 ATP-dependent peptidase activity, 0006508 proteolysis; PDB: 3LJC_A 2ANE_G 1ZBO_A 3M65_A.
Probab=99.93 E-value=1.1e-25 Score=209.62 Aligned_cols=189 Identities=29% Similarity=0.522 Sum_probs=131.3
Q ss_pred cccceee--eccCCCccCccccchhHHHHHHHHHhCCce-EEEEEe-C-------CCCCccccccceEEEEEeeecCCce
Q 011050 289 MPLFVMD--VVIPCQRFPLHIFEPRYRLMVRRIMEGNHR-MGMVII-D-------PTTGSVADFACEVEITECEPLPDGR 357 (494)
Q Consensus 289 lPl~~l~--v~fP~~~~pl~i~~~~~~~~~~~~~~~~~~-~~v~~~-~-------~~~~~~~~iG~~~~I~~~~~~~dg~ 357 (494)
+|+||++ |+|||+..|+++++++|+.|+++++.+++. ||+++. . +..+++|.+||+|+|.++...+||+
T Consensus 2 lPv~pl~~~vlfPg~~~~i~i~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~G~~~~I~~~~~~~dg~ 81 (205)
T PF02190_consen 2 LPVFPLRNQVLFPGQTLPIHIFEPRYIALLKRALDNNNPYFGIFLVKSNKDDSDEPSIDDLYSVGTLARIIRVEELPDGT 81 (205)
T ss_dssp EEEEEESSS---TTBEEEEEE-SHHHHHHHHHHHTTTSE-EEEEEE-EBSSTSSSS-GGGB-SEEEEEEEEEEEESTTS-
T ss_pred EEEEEeCCcccCCCeeEEEEECCHHHHHHHHHHHhcCCCceeEEeecccCCcccCCcccccccceEEEEEEEEEecCCCC
Confidence 7999996 999999999999999999999999998776 888887 1 2345789999999999999999999
Q ss_pred EEEEEEeccceEEeee---ecCCCeeEEEEEEecCC-CCCCcccHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 011050 358 FVLEIESRRRFRILRS---WDQDGYRVAEIEWVQDI-HPEGVEDRADLQDLTNNAAEYARLWLRREKESARQDRRRLEKL 433 (494)
Q Consensus 358 ~~v~~~g~~R~~i~~~---~~~~~~~~a~ve~l~d~-~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 433 (494)
+.|.++|.+||+|.++ ..++||++|+|++++|. +....+...++.++...+.+...++......... . +.
T Consensus 82 ~~v~~~g~~R~ki~~~~~~~~~~~~~~a~v~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~ 155 (205)
T PF02190_consen 82 YKVLVQGLQRFKILKINNETQEDPYLVAEVEPLEDVEPPESDELDEEIKALLRELIKKIKEAYENLKELLP---W---DL 155 (205)
T ss_dssp EEEEEEEEEEEEEEEEEE--ECSSCEEEEEEEE-----GCGHHHHHHHHHHHHHHHHHHH---HHHCCC-C---H---HH
T ss_pred EEEEEEEEEEEEEEEEecccccCCceEEEEEEecccCccchhhhHHHHHHHHHHHHHHHHHHHHhhhcccc---h---hh
Confidence 9999999999999999 56899999999999873 3332222234444444444433321111111100 0 11
Q ss_pred hhhhcCCCCCCCcchhHHHHHhcCCCChHHHhhhccCCCHHHHHHHHHHHHHh
Q 011050 434 LNVEVMMPPSQDPERFSFWLATLSDRRPSERLELLRIRDTRERIRRGLIFLRA 486 (494)
Q Consensus 434 ~~~~~~~~~~~~~~~l~~~ia~~l~l~~~~kq~LLe~~d~~~Rl~~l~~~L~~ 486 (494)
... +...++|..|+||+|++++++.++||+||++.|+.+|++.++++|++
T Consensus 156 ~~~---~~~~~~~~~l~~~~~~~l~~~~~ek~~lL~~~~~~~Rl~~l~~~L~~ 205 (205)
T PF02190_consen 156 LLK---INNPDNPPELADFVASLLPLSPEEKQELLETDDLKERLKLLIELLKK 205 (205)
T ss_dssp HHH---TTTHHHHHHHHHHHHHHS---HHHHHHHHC--SHHHHHHHHHHHHH-
T ss_pred hhh---hhccCCHHHHHHHHHHhCCCCHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 111 34567788899999999999999999999999999999999999975
No 3
>COG2802 Uncharacterized protein, similar to the N-terminal domain of Lon protease [General function prediction only]
Probab=99.93 E-value=1.8e-24 Score=193.47 Aligned_cols=188 Identities=29% Similarity=0.453 Sum_probs=148.3
Q ss_pred Cccccceee--eccCCCccCccccchhHHHHHHHHHhCCceEEEEEeCCC---CC----ccccccceEEEEEeeecCCce
Q 011050 287 DLMPLFVMD--VVIPCQRFPLHIFEPRYRLMVRRIMEGNHRMGMVIIDPT---TG----SVADFACEVEITECEPLPDGR 357 (494)
Q Consensus 287 ~~lPl~~l~--v~fP~~~~pl~i~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~----~~~~iG~~~~I~~~~~~~dg~ 357 (494)
..+|+||++ |+|||...|++||++||..|++.++.+++.|||+..+++ .+ .+..|||+++|+++...+||+
T Consensus 10 ~~LplFPL~~~vLlPg~~LpL~IFEpRY~~Mv~~~~~~~r~fGvv~i~~~~~~~~~~~~~ls~VGcla~I~~~~~~~DGr 89 (221)
T COG2802 10 LELPLFPLPGAVLLPGGLLPLNIFEPRYLAMVRTCLAEGRRFGVVLIDRGREVGGGLPPELSDVGCLARITEFEELGDGR 89 (221)
T ss_pred ceeeccccccccccCCCCCchhhccHHHHHHHHHHHhcCCceeEEEecccccccCCCcchhhccceeEEEeEeeEcCCCc
Confidence 359999995 999999999999999999999999999999999999762 22 678999999999999999999
Q ss_pred EEEEEEeccceEEeeeec-CCCeeEEEEEEecCCCCCCcccHHhHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 011050 358 FVLEIESRRRFRILRSWD-QDGYRVAEIEWVQDIHPEGVEDRADLQDLTN-NAAEYARLWLRREKESARQDRRRLEKLLN 435 (494)
Q Consensus 358 ~~v~~~g~~R~~i~~~~~-~~~~~~a~ve~l~d~~~~~~~~~~~l~~l~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 435 (494)
+.|.++|.+||||.++.- .+||..+++++++|.+..... ..+++.... .+...+..|.....-. .+|..
T Consensus 90 ~~I~~~G~~RFRv~~~~~~~~pyr~~~~~~~~D~~~~~~~-a~evdr~~~~~l~~~~r~~~~~~~l~--------~d~~~ 160 (221)
T COG2802 90 YLILVRGGQRFRVLEELADDDPYRRARVPFWPDLPSDPDG-AEEVDRRLDALLMRAARAYLQRLELL--------ADWES 160 (221)
T ss_pred EEEEEEeEEEEEEEEEecccCcceeeccccCCCCccCcch-HHHHHHHHHHHHHHHHHHHhhhcchh--------hhhcc
Confidence 999999999999999985 899999999999996554221 122222111 1222222222221100 02221
Q ss_pred hhcCCCCCCCcchhHHHHHhcCCCChHHHhhhccCCCHHHHHHHHHHHHHhhh
Q 011050 436 VEVMMPPSQDPERFSFWLATLSDRRPSERLELLRIRDTRERIRRGLIFLRAEE 488 (494)
Q Consensus 436 ~~~~~~~~~~~~~l~~~ia~~l~l~~~~kq~LLe~~d~~~Rl~~l~~~L~~~~ 488 (494)
-...++.++++.++..+|+++.+||.+|+..|+..|+..++.+++...
T Consensus 161 -----~~~~~~~~l~n~L~~llp~~~~~k~~ll~a~d~~~r~~~L~~~~e~l~ 208 (221)
T COG2802 161 -----YERASNADLANRLYMLLPFDPAEKQALLEAPDLPTRAERLIRLLEQLL 208 (221)
T ss_pred -----cccccHHHHHHHHHHhCCCChhHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 235788999999999999999999999999999999999999988654
No 4
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.92 E-value=2.3e-24 Score=236.75 Aligned_cols=192 Identities=19% Similarity=0.300 Sum_probs=159.5
Q ss_pred ccceee--eccCCCccCccccchhHHHHHHHHHhCCceEE-EEEeCC------CCCccccccceEEEEEeeecCC---ce
Q 011050 290 PLFVMD--VVIPCQRFPLHIFEPRYRLMVRRIMEGNHRMG-MVIIDP------TTGSVADFACEVEITECEPLPD---GR 357 (494)
Q Consensus 290 Pl~~l~--v~fP~~~~pl~i~~~~~~~~~~~~~~~~~~~~-v~~~~~------~~~~~~~iG~~~~I~~~~~~~d---g~ 357 (494)
|+||++ |+|||+.+||+||+|+|+.|+++++.+++.|+ ++++++ ...++|.|||+|+|+++.+++| |+
T Consensus 1 Pl~PLr~~VLfPg~~lpL~Ife~r~i~mV~~al~~~~~~~~vv~~k~~~~~~p~~~~ly~VGt~a~I~~~~~~~d~~dG~ 80 (775)
T TIGR00763 1 PLLPLRRRPLFPGMIKPIDVGREKSIKLIKEALRLKQPYLGLFLQKDDDNEEPEEDDIYSVGVVAQILEMLPLPSSGTAT 80 (775)
T ss_pred CeEcCCCCccCCCcceeEecCCHHHHHHHHHHHhcCCcEEEEEEecCcccCCCCcccccCCceEEEEEEeccCCCCCCCe
Confidence 899996 99999999999999999999999999888887 666642 2347899999999999999544 99
Q ss_pred EEEEEEeccceEEeeeecCCCeeEEEEEEecCCCCCCcccHHhHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHhh
Q 011050 358 FVLEIESRRRFRILRSWDQDGYRVAEIEWVQDIHPEGVEDRADLQDLTNNAAEYARLWLRREK--ESARQDRRRLEKLLN 435 (494)
Q Consensus 358 ~~v~~~g~~R~~i~~~~~~~~~~~a~ve~l~d~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~ 435 (494)
+.|.++|.+||+|.++.+++||+.|+|+++++++... ...++.++.+.+.+.+.++..... ..+.. .+..
T Consensus 81 ~~Ilv~G~~R~rI~~~~~~~p~~~A~V~~l~~~~~~~--~~~e~~al~~~l~~~~~el~~l~~l~~~~~e------~~~~ 152 (775)
T TIGR00763 81 YKVVVEGLRRIRIKELSDKGGYLVVRVDNLKEEPFDK--DDEEIKALTREIKETFRELISLSKLFREQPA------LLSA 152 (775)
T ss_pred EEEEEEEEEEEEEEEEecCCCcEEEEEEEecCcCCCC--CcHHHHHHHHHHHHHHHHHHHhCccccCCHH------HHHH
Confidence 9999999999999999999999999999998753321 124577888888888888876544 22211 1111
Q ss_pred hhcCCCCCCCcchhHHHHHhcCCCC-hHHHhhhccCCCHHHHHHHHHHHHHhhhccccC
Q 011050 436 VEVMMPPSQDPERFSFWLATLSDRR-PSERLELLRIRDTRERIRRGLIFLRAEEQGCRL 493 (494)
Q Consensus 436 ~~~~~~~~~~~~~l~~~ia~~l~l~-~~~kq~LLe~~d~~~Rl~~l~~~L~~~~~~~~~ 493 (494)
+...+||++++|++|++++++ .++||+|||+.|+.+|+++++.+|.++++.-.+
T Consensus 153 ----~~~~~dp~~Lad~ia~~L~l~~~~eKQ~LLE~~d~~~RL~~l~~lL~~ele~l~l 207 (775)
T TIGR00763 153 ----LEDIDEPGRLADFVAASLQLKEKDELQEVLETVNIEKRLKKALELLKKELELLKL 207 (775)
T ss_pred ----HhccCCHHHHHHHHHHhcCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 345789999999999999999 999999999999999999999999999876544
No 5
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2.2e-24 Score=213.19 Aligned_cols=288 Identities=32% Similarity=0.587 Sum_probs=218.8
Q ss_pred cCCCCCCCcccccccccccccCcEEcCCCCcccHhhHHHhccCCCCCCCCCcccccCC---CCCcccccHHHHHHHhChH
Q 011050 193 IHGTPERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLFITP---RTCAVSVTLNSIIQKNFPE 269 (494)
Q Consensus 193 ~~~~~~~~~~~~C~iC~~~~~~Pv~~~cgh~fc~~Cl~~~~~~~~~CP~Cr~~~~~~~---~~~~~~~~l~~~~~~~~p~ 269 (494)
..+......+|.|.+|...+..||++||||+||..||...+.....||.||.++...+ ....+|+.+..++.+|+++
T Consensus 75 ~s~~~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~ 154 (398)
T KOG4159|consen 75 LSGPEEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQETECPLCRDELVELPALEQALSLNRLLCKLITKFLEG 154 (398)
T ss_pred hccCccccchhhhhhhHhhcCCCccccccccccHHHHHHHhccCCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhh
Confidence 3444555789999999999999999999999999999998888889999999885211 1223466777888889988
Q ss_pred HHhhhhhccc-c--cccccCCccccceee-eccCCCccCccccchhHHHHHHHHHhC-CceEEEEEeCCCCCc--ccccc
Q 011050 270 EYAERKSEHD-S--LINFGVDLMPLFVMD-VVIPCQRFPLHIFEPRYRLMVRRIMEG-NHRMGMVIIDPTTGS--VADFA 342 (494)
Q Consensus 270 ~~~~r~~~~~-~--l~~~~~~~lPl~~l~-v~fP~~~~pl~i~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~--~~~iG 342 (494)
....+...++ . -........|+|++. +.||....|+++|+++|..|++++++. +.+|++++.+...+. .+.+|
T Consensus 155 ~~~~s~~~~~~~~~e~~~~e~~~p~f~v~~~~~p~v~cpl~vfe~~y~lm~~r~~~~~~~rf~i~~sd~~~~~~~~~e~g 234 (398)
T KOG4159|consen 155 SSSFSPKASEKSKEEESSRECESPLFPVCTLAFPEVPCPLQVFEPRYRLMIRRLLETGDKRFGICLSDSSKGSGQAAEIG 234 (398)
T ss_pred hhccchhhhhhhccccccccccCCcccccccccccccCcHHHccchHHHHHHHHHhhcceeeeeecccccCCcchhhhcc
Confidence 8764433222 1 112334569999876 999999999999999999999999986 678999999876554 78999
Q ss_pred ceEEEEEeeecCCceEEEEEEeccceEEeeeecCCCeeEEEEEEecCCC---CCCcccHHhHHHHHHHHHHHHHHHHHHH
Q 011050 343 CEVEITECEPLPDGRFVLEIESRRRFRILRSWDQDGYRVAEIEWVQDIH---PEGVEDRADLQDLTNNAAEYARLWLRRE 419 (494)
Q Consensus 343 ~~~~I~~~~~~~dg~~~v~~~g~~R~~i~~~~~~~~~~~a~ve~l~d~~---~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 419 (494)
|+.+|..+..+.||+..+...|..||++.....+++|.+|++++++|.+ ..+.+..+.+..++..+......|....
T Consensus 235 ~i~ei~~v~~l~dgrsv~~~~gk~r~r~~~~~~~d~y~~~~ve~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 314 (398)
T KOG4159|consen 235 CILEIRKVESLGDGRSVVDSIGKSRFRVLLFSQTDGYPVADVEYLEDRPAVKVEGHDEPETLVELMKEVVKKECLWFESV 314 (398)
T ss_pred chhhhcccccccccchhhhhhcCcceeeeeecCCCcceeeeeeeeeCcHHhhhccchhchhHHHHHHHHHHhhhhhhhcc
Confidence 9999999999999999999999999999999999999999999999953 1122212333444444444444454443
Q ss_pred HHHHHHhHHHHHHHhhhhcCCC-------CCCCcchhHHHHHhcCCCChHHHhhhccCCCHHHHHHHHHHHHHh
Q 011050 420 KESARQDRRRLEKLLNVEVMMP-------PSQDPERFSFWLATLSDRRPSERLELLRIRDTRERIRRGLIFLRA 486 (494)
Q Consensus 420 ~~~~~~~~~~l~~~~~~~~~~~-------~~~~~~~l~~~ia~~l~l~~~~kq~LLe~~d~~~Rl~~l~~~L~~ 486 (494)
...... .+...++.++ ...+...+++|....++++...+-.++.+.++.+|+.....++..
T Consensus 315 ~~~~~~------~~~~~~~~~p~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~~~~~t~ 382 (398)
T KOG4159|consen 315 ADPMKG------RLLVHFGCMPFLEINFECLESGPAWCWWKTALLPSEARLKSEFLAMRSLKNRLTAIDRELTL 382 (398)
T ss_pred chhhhh------hhhhcccccccchhchhhhccchHHHHHHHhcCCcHHHHHHHHHhccchhhhhcccchhhhh
Confidence 322221 2222222111 234678889999999999999999999999999999888777654
No 6
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=3e-23 Score=213.10 Aligned_cols=193 Identities=21% Similarity=0.277 Sum_probs=168.6
Q ss_pred ccccceee--eccCCCccCccccchhHHHHHHHHHhCC-ceEEEEEeCC------CCCccccccceEEEEEeeecCCceE
Q 011050 288 LMPLFVMD--VVIPCQRFPLHIFEPRYRLMVRRIMEGN-HRMGMVIIDP------TTGSVADFACEVEITECEPLPDGRF 358 (494)
Q Consensus 288 ~lPl~~l~--v~fP~~~~pl~i~~~~~~~~~~~~~~~~-~~~~v~~~~~------~~~~~~~iG~~~~I~~~~~~~dg~~ 358 (494)
.+|++|++ |+||+++.|+.+++++++.+++.++.++ +.+++++|.. ..+++|.+||+|+|.++.++|||++
T Consensus 9 ~lpvlplr~~vvfP~m~~pl~vgr~~si~ale~a~~~~~k~i~l~~qk~~~~d~p~~~dly~vGt~a~I~q~~~lpdg~~ 88 (782)
T COG0466 9 ELPVLPLRDVVVFPGMVIPLFVGREKSIKALEEAMKNDQKYILLVTQKDASTDEPTEDDLYEVGTLAKILQILKLPDGTV 88 (782)
T ss_pred cceeEEecCceeCCCceeeEEcCChhHHHHHHHHHhCCCCEEEEEEecccccCCCChhhhhhcchheeeeeeeeCCCCcE
Confidence 58999998 9999999999999999999999999986 7888888852 3458999999999999999999999
Q ss_pred EEEEEeccceEEeeeecCCCeeEEEEEEecCCCCCCcccHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhc
Q 011050 359 VLEIESRRRFRILRSWDQDGYRVAEIEWVQDIHPEGVEDRADLQDLTNNAAEYARLWLRREKESARQDRRRLEKLLNVEV 438 (494)
Q Consensus 359 ~v~~~g~~R~~i~~~~~~~~~~~a~ve~l~d~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 438 (494)
+|.++|.+|++|.++...++++.|+++.+++.+.++ ..+++++.+.+...+.++.......+. +.+..
T Consensus 89 kvlveg~~R~~I~~~~~~~~~~~a~~~~i~~~~~~~---~~~~~al~~~i~~~~~~~~~l~~~~~~-------e~l~~-- 156 (782)
T COG0466 89 KVLVEGLQRVRISKLSDEEEFFEAEIELLPDEPIDE---EREIEALVRSILSEFEEYAKLNKKIPP-------EELQS-- 156 (782)
T ss_pred EEEEEeeeeEEEEeeccCCCceEEEEEecCCCcccc---hhHHHHHHHHHHHHHHHHHHhccCCCH-------HHHHH--
Confidence 999999999999999999999999999999865432 356788999999999999888765443 22222
Q ss_pred CCCCCCCcchhHHHHHhcCCCChHHHhhhccCCCHHHHHHHHHHHHHhhhccccC
Q 011050 439 MMPPSQDPERFSFWLATLSDRRPSERLELLRIRDTRERIRRGLIFLRAEEQGCRL 493 (494)
Q Consensus 439 ~~~~~~~~~~l~~~ia~~l~l~~~~kq~LLe~~d~~~Rl~~l~~~L~~~~~~~~~ 493 (494)
+...++|+.++|.+|++++++.+++|++||+.|+.+||+.++.+|..+++.-.+
T Consensus 157 -~~~i~~~~klad~iaa~l~~~~~~kQ~iLe~~~v~~Rlek~l~~l~~ei~~~~~ 210 (782)
T COG0466 157 -LNSIDDPGKLADTIAAHLPLKLEEKQEILETLDVKERLEKLLDLLEKEIDLLQL 210 (782)
T ss_pred -HhcccchHHHHHHHHHhCCCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 235789999999999999999999999999999999999999999999876544
No 7
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.84 E-value=1.2e-20 Score=176.22 Aligned_cols=125 Identities=23% Similarity=0.392 Sum_probs=120.1
Q ss_pred hhHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHH
Q 011050 42 DRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAE 121 (494)
Q Consensus 42 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (494)
+....|+.++.+|+.+++.++|++|+..|++||+++|+|+.+|.|||.+|.++|+| .
T Consensus 76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~-----------------------~ 132 (304)
T KOG0553|consen 76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEY-----------------------E 132 (304)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcch-----------------------H
Confidence 56777999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHhhhhhhh
Q 011050 122 LALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASLI 189 (494)
Q Consensus 122 ~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~ 189 (494)
.|++|++.|+.+||.+.++|-++|.+|..+|+|++|++.|++||.++|+|...++.++.++..+....
T Consensus 133 ~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 133 DAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999998888876655
No 8
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=3.9e-16 Score=155.61 Aligned_cols=117 Identities=29% Similarity=0.477 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHH
Q 011050 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (494)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (494)
.+...+.+|+.+|+.|||..|+.+|++||..+|+|+.+|+|||.||.+++++ ..|++
T Consensus 357 ~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~-----------------------~~aL~ 413 (539)
T KOG0548|consen 357 KAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEY-----------------------PEALK 413 (539)
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhH-----------------------HHHHH
Confidence 3677888999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHhhh
Q 011050 126 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTT 185 (494)
Q Consensus 126 ~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~ 185 (494)
|++++++++|++.++|++.|.++..+++|++|++.|.+++++||++.++...+.++..++
T Consensus 414 Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 414 DAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999988888877765
No 9
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.64 E-value=1.1e-15 Score=134.40 Aligned_cols=124 Identities=25% Similarity=0.361 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCC-----cccccChhHHHHHHHhhhccCCCCCccccccCCCCCch
Q 011050 44 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD-----PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTT 118 (494)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (494)
...+..++..||.+|+.|+|++|...|+.||++.|.. +.+|.|||.|+++++.+
T Consensus 92 ~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~--------------------- 150 (271)
T KOG4234|consen 92 IEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKW--------------------- 150 (271)
T ss_pred HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhH---------------------
Confidence 4467889999999999999999999999999999975 48999999999999999
Q ss_pred hHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHhhhhhhhc
Q 011050 119 HAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASLIG 190 (494)
Q Consensus 119 ~~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~ 190 (494)
..|+.++.|||+++|.+-+|+.++|.+|..+.+|++|+.+|.+.+.++|....+++++..+...+...+.
T Consensus 151 --e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernE 220 (271)
T KOG4234|consen 151 --ESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNE 220 (271)
T ss_pred --HHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999888877766654
No 10
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=6.2e-16 Score=139.47 Aligned_cols=201 Identities=22% Similarity=0.324 Sum_probs=161.9
Q ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHH
Q 011050 44 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 123 (494)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 123 (494)
..-+..+.++|+.+|....|..||.+|.+||.++|..+.+|.|||.||+++.+| +.+
T Consensus 7 s~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~-----------------------~~v 63 (284)
T KOG4642|consen 7 SESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHW-----------------------EPV 63 (284)
T ss_pred chHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhh-----------------------hhh
Confidence 344788999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCC-----CCchhHHHHHHHH----------------
Q 011050 124 LKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDP-----FSNPLQASLQNLE---------------- 182 (494)
Q Consensus 124 ~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p-----~~~~~~~~~~~~~---------------- 182 (494)
..++++|++++|+.++++|.+|.++...+.|++|+..+.+|+.+-- .-.++.+.+..++
T Consensus 64 ~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 64 EEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred hhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 9999999999999999999999999999999999999999965421 1122333322111
Q ss_pred -------hh--------hhhhhcc---------------------------------ccCCCCCCCcccccccccccccC
Q 011050 183 -------RT--------TASLIGR---------------------------------RIHGTPERTDDFDCTLCLKLLYE 214 (494)
Q Consensus 183 -------~~--------~~~~~~~---------------------------------~~~~~~~~~~~~~C~iC~~~~~~ 214 (494)
.. ++....+ .........+.+-|.|.++++.+
T Consensus 144 El~~yl~slie~~~~~~~s~~~~N~~sde~~k~~q~~~~~~~d~~~kel~elf~~v~e~rk~rEvpd~lcgkIt~el~~~ 223 (284)
T KOG4642|consen 144 ELHSYLESLIEGDRERELSEWQENGESDEHLKTMQVPIEQDHDHTTKELSELFSKVDEKRKKREVPDYLCGKITLELMRE 223 (284)
T ss_pred hHHHHHHHHhccchhhHHHHHHHcCCChHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhhhHHhhcC
Confidence 00 1100100 11233345566677899999999
Q ss_pred cEEcCCCCcccHhhHHHhcc-CCCCCCCCCcccccCCCCCcccccHHHHHHHhChH
Q 011050 215 PITTPCGHSFCRSCLFQSMD-RGNKCPLCRAVLFITPRTCAVSVTLNSIIQKNFPE 269 (494)
Q Consensus 215 Pv~~~cgh~fc~~Cl~~~~~-~~~~CP~Cr~~~~~~~~~~~~~~~l~~~~~~~~p~ 269 (494)
|+..|.|-+|-+.-|..++. -|...|..|.++. +.++.+|..++..|..|...
T Consensus 224 pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lt--e~q~ipN~alkevIa~fl~~ 277 (284)
T KOG4642|consen 224 PVITPSGITYDRADIEEHLQRVGHFDPVTRWPLT--EYQLIPNLALKEVIAAFLKE 277 (284)
T ss_pred CccCccccchhHHHHHHHHHHhccCCchhcccCC--HHhhccchHHHHHHHHHHHh
Confidence 99999999999999999987 4778999999984 46788999999998877543
No 11
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=6.6e-16 Score=154.00 Aligned_cols=113 Identities=35% Similarity=0.461 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHH
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (494)
+..++.+||.+|..|||+.|+.+|++||.++|.++.+|+||+.+|.++|+| .+|+.|
T Consensus 2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~-----------------------~~al~d 58 (539)
T KOG0548|consen 2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSY-----------------------EKALKD 58 (539)
T ss_pred hhHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhH-----------------------HHHHHH
Confidence 567889999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHH
Q 011050 127 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLE 182 (494)
Q Consensus 127 ~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~ 182 (494)
+.+.++++|+|+++|.++|.++..+|+|++|+..|.++|+.+|+|+.+...+....
T Consensus 59 a~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 59 ATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 99999999999999999999999999999999999999999999999999988887
No 12
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.60 E-value=3.8e-15 Score=140.69 Aligned_cols=121 Identities=25% Similarity=0.332 Sum_probs=113.7
Q ss_pred hhHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHH
Q 011050 42 DRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAE 121 (494)
Q Consensus 42 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (494)
.....+.+++++||.||++|+|++||.||++++.++|.++..|.|||.+|++++.| .
T Consensus 92 ~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~F-----------------------A 148 (536)
T KOG4648|consen 92 QLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSF-----------------------A 148 (536)
T ss_pred HHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHH-----------------------H
Confidence 45666778899999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHhhh
Q 011050 122 LALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTT 185 (494)
Q Consensus 122 ~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~ 185 (494)
.|..||..|+.+|..+.+||-++|.+-..+|...+|.++++.+|++.|++.++++.++.+....
T Consensus 149 ~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~ 212 (536)
T KOG4648|consen 149 QAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINSLR 212 (536)
T ss_pred HHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchH
Confidence 9999999999999999999999999999999999999999999999999999888877776544
No 13
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=5.9e-15 Score=143.70 Aligned_cols=127 Identities=24% Similarity=0.388 Sum_probs=116.5
Q ss_pred hhhHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCC---------------cccccChhHHHHHHHhhhccCCCCC
Q 011050 41 WDRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD---------------PIVLGNRSSAYIRISQFLKHRPPSA 105 (494)
Q Consensus 41 ~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~---------------~~~~~~~a~~~~~~~~~~~~~~~~~ 105 (494)
.+....|...++.|+.+|+.|+|..|+..|.+|+..-..+ ..+|.|+|.||.++++|
T Consensus 202 ~e~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~-------- 273 (397)
T KOG0543|consen 202 EERLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEY-------- 273 (397)
T ss_pred HHHHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhH--------
Confidence 3577888999999999999999999999999998875432 28899999999999999
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHhhh
Q 011050 106 SEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTT 185 (494)
Q Consensus 106 ~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~ 185 (494)
.+|+..++++|.++|+|++|+|++|.||..+++|+.|+.+|+++++++|+|++++..+..+.+.+
T Consensus 274 ---------------~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~ 338 (397)
T KOG0543|consen 274 ---------------KEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKI 338 (397)
T ss_pred ---------------HHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998888877
Q ss_pred hhhhc
Q 011050 186 ASLIG 190 (494)
Q Consensus 186 ~~~~~ 190 (494)
+....
T Consensus 339 ~~~~~ 343 (397)
T KOG0543|consen 339 REYEE 343 (397)
T ss_pred HHHHH
Confidence 66553
No 14
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=2.9e-14 Score=140.51 Aligned_cols=120 Identities=26% Similarity=0.415 Sum_probs=105.4
Q ss_pred chhhHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchh
Q 011050 40 PWDRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTH 119 (494)
Q Consensus 40 ~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (494)
..+..+.|..++.+||.+|+.|+|++||.+|++||+++|+.+.+|+|||.||..+|+|
T Consensus 108 ~e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~---------------------- 165 (606)
T KOG0547|consen 108 KEERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDW---------------------- 165 (606)
T ss_pred hHHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhH----------------------
Confidence 3356777899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCC-CchhHHHHHHHH
Q 011050 120 AELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPF-SNPLQASLQNLE 182 (494)
Q Consensus 120 ~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~ 182 (494)
.+.++++.+|++++|++++|+++++.++..+|++.+|+.+.....-+... |..+..+.+++-
T Consensus 166 -~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~L 228 (606)
T KOG0547|consen 166 -EKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVL 228 (606)
T ss_pred -HHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHH
Confidence 99999999999999999999999999999999999999998766555443 334444444433
No 15
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.50 E-value=5.4e-14 Score=141.61 Aligned_cols=119 Identities=26% Similarity=0.417 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHH
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (494)
+..++.+|+.+|..|+|++|+.+|++|++++|+++.+|.+||.+|..+|+| .+|+.+
T Consensus 2 ~~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~-----------------------~eAl~~ 58 (356)
T PLN03088 2 AKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNF-----------------------TEAVAD 58 (356)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-----------------------HHHHHH
Confidence 356888999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHhhhhhh
Q 011050 127 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASL 188 (494)
Q Consensus 127 ~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~ 188 (494)
+++|++++|+++.+|+++|.+|..+|+|++|+.+|+++++++|++..+...+..+...+...
T Consensus 59 ~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~~ 120 (356)
T PLN03088 59 ANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAEE 120 (356)
T ss_pred HHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999998888654
No 16
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.47 E-value=3e-13 Score=118.34 Aligned_cols=115 Identities=12% Similarity=0.163 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHH
Q 011050 49 DLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAE 128 (494)
Q Consensus 49 ~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 128 (494)
.+...|..++..|+|++|+..|.+++.++|.++.+|.++|.++..+|++ .+|+..++
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~-----------------------~~A~~~y~ 82 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEY-----------------------TTAINFYG 82 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhH-----------------------HHHHHHHH
Confidence 3567899999999999999999999999999999999999999999999 99999999
Q ss_pred HHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHhhhh
Q 011050 129 KLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTA 186 (494)
Q Consensus 129 ~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~ 186 (494)
+++.++|+++.+++.+|.++..+|++++|+..|.++++++|++.........+...+.
T Consensus 83 ~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~ 140 (144)
T PRK15359 83 HALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVD 140 (144)
T ss_pred HHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988877766655443
No 17
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=99.41 E-value=4.1e-13 Score=133.30 Aligned_cols=121 Identities=21% Similarity=0.309 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHH
Q 011050 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (494)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (494)
.++.+..+|+.+|..++|+.|+..|++||+++|+++.+|.+||.++++.++| ..|+.
T Consensus 3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~-----------------------~~Al~ 59 (476)
T KOG0376|consen 3 SAEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESF-----------------------GGALH 59 (476)
T ss_pred hhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechh-----------------------hhHHH
Confidence 3678889999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHhhhhhhh
Q 011050 126 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASLI 189 (494)
Q Consensus 126 ~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~ 189 (494)
|+.+|++++|.+.++|+++|.+.+.++++.+|+.+|++...+.|+++.+...+...+..+....
T Consensus 60 Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~ 123 (476)
T KOG0376|consen 60 DALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEK 123 (476)
T ss_pred HHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999998887744
No 18
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=6.1e-13 Score=128.91 Aligned_cols=124 Identities=23% Similarity=0.370 Sum_probs=114.0
Q ss_pred hHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCC----cccccChhHHHHHHHhhhccCCCCCccccccCCCCCch
Q 011050 43 RYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD----PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTT 118 (494)
Q Consensus 43 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (494)
..+....++.+||.+|++|+|..|-.+|+.||.++|++ +.+|.|||.++.++|+.
T Consensus 245 ~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl--------------------- 303 (486)
T KOG0550|consen 245 MPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRL--------------------- 303 (486)
T ss_pred hHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCc---------------------
Confidence 34556788999999999999999999999999999985 48899999999999999
Q ss_pred hHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHhhhhhhhc
Q 011050 119 HAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASLIG 190 (494)
Q Consensus 119 ~~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~ 190 (494)
.+|+.+++.|+.+||.+.+||.++|.|+..+++|++|+++|++|+++..+ ..++..+.+.+..+.+.+.
T Consensus 304 --~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkkSkR 372 (486)
T KOG0550|consen 304 --REAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKKSKR 372 (486)
T ss_pred --hhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999888 7888888888887776653
No 19
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.35 E-value=6.2e-12 Score=108.65 Aligned_cols=117 Identities=10% Similarity=0.112 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHH
Q 011050 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (494)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (494)
.+......|..++..|++++|+..|++++..+|.++.++.++|.+++.+|++ .+|+.
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~-----------------------~~A~~ 72 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEY-----------------------EEAID 72 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH-----------------------HHHHH
Confidence 3566889999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHhhh
Q 011050 126 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTT 185 (494)
Q Consensus 126 ~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~ 185 (494)
.+++++..+|+++..++.+|.+|...|++++|+..|+++++++|++.......+.+.+.+
T Consensus 73 ~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 132 (135)
T TIGR02552 73 AYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEAML 132 (135)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999877777766554
No 20
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.30 E-value=1.7e-11 Score=106.07 Aligned_cols=120 Identities=8% Similarity=-0.038 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHH
Q 011050 44 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 123 (494)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 123 (494)
......+...|..++..|++++|...|.-...++|.++..|+++|.|+-.+|+| .+|
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~-----------------------~~A 88 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHW-----------------------GEA 88 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhH-----------------------HHH
Confidence 455778889999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHhhhh
Q 011050 124 LKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTA 186 (494)
Q Consensus 124 ~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~ 186 (494)
+..|.+|+.++|+++.++++.|.+|..+|+.+.|++.|+.++...-.++.-....++.+..+.
T Consensus 89 I~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~L~ 151 (157)
T PRK15363 89 IYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRAEKMLQ 151 (157)
T ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999987555554444444544443
No 21
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.25 E-value=2.3e-11 Score=112.20 Aligned_cols=116 Identities=12% Similarity=0.154 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHH-HHHHh--hhccCCCCCccccccCCCCCchhH
Q 011050 44 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAY-IRISQ--FLKHRPPSASEYRPLNGLDPTTHA 120 (494)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 120 (494)
+.+...|...|..+...|++++|+..|.+|+.++|+++.++.++|.++ ...|+ +
T Consensus 70 P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~----------------------- 126 (198)
T PRK10370 70 PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMT----------------------- 126 (198)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCc-----------------------
Confidence 345678999999999999999999999999999999999999999985 66676 5
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHH
Q 011050 121 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLE 182 (494)
Q Consensus 121 ~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~ 182 (494)
.+|...++++++++|+++.+++.+|.++...|+|++|+..|+++++++|.+.+-...++.++
T Consensus 127 ~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i~~i~ 188 (198)
T PRK10370 127 PQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLVESIN 188 (198)
T ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999998776555554443
No 22
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=3.5e-11 Score=113.93 Aligned_cols=111 Identities=24% Similarity=0.391 Sum_probs=100.6
Q ss_pred hHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCC----cccccChhHHHHHHHhhhccCCCCCccccccCCCCCch
Q 011050 43 RYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD----PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTT 118 (494)
Q Consensus 43 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (494)
.-..|..+++.||.+|+.++|..|+..|+++|.....| +.+|.|||.|.+.+|+|
T Consensus 77 p~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~Ny--------------------- 135 (390)
T KOG0551|consen 77 PHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNY--------------------- 135 (390)
T ss_pred hHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHH---------------------
Confidence 34478999999999999999999999999999986554 48999999999999999
Q ss_pred hHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHH
Q 011050 119 HAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQA 176 (494)
Q Consensus 119 ~~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~ 176 (494)
..|+.|+.+|+.++|++.+||++-|.|++.+.++.+|+.+.+..++++-+.+.+..
T Consensus 136 --Rs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~~~ 191 (390)
T KOG0551|consen 136 --RSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAKKAIE 191 (390)
T ss_pred --HHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888766655443
No 23
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=5.1e-11 Score=108.27 Aligned_cols=126 Identities=25% Similarity=0.315 Sum_probs=108.7
Q ss_pred hhhHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcc--------CCCCc----------ccccChhHHHHHHHhhhccCC
Q 011050 41 WDRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNI--------KPGDP----------IVLGNRSSAYIRISQFLKHRP 102 (494)
Q Consensus 41 ~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~--------~p~~~----------~~~~~~a~~~~~~~~~~~~~~ 102 (494)
.+..+.+..+.++||.+|+.|+|.+|...|..|+.. .|.++ .++.|.++|+...++|
T Consensus 172 deKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~----- 246 (329)
T KOG0545|consen 172 DEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEY----- 246 (329)
T ss_pred hHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHH-----
Confidence 345566678899999999999999999999999653 56554 7899999999999999
Q ss_pred CCCccccccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCch-hHHHHHHH
Q 011050 103 PSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNP-LQASLQNL 181 (494)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~-~~~~~~~~ 181 (494)
.++++.+...+..+|.+.+|||++|.++....+..+|.++|.++|+++|.-+. +...++.+
T Consensus 247 ------------------yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~l 308 (329)
T KOG0545|consen 247 ------------------YEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLL 308 (329)
T ss_pred ------------------HHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999997554 45566666
Q ss_pred Hhhhhhhh
Q 011050 182 ERTTASLI 189 (494)
Q Consensus 182 ~~~~~~~~ 189 (494)
+..++..+
T Consensus 309 e~r~~ek~ 316 (329)
T KOG0545|consen 309 ENRMAEKQ 316 (329)
T ss_pred HHHHHHhh
Confidence 66555443
No 24
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.22 E-value=2.8e-11 Score=119.15 Aligned_cols=105 Identities=19% Similarity=0.156 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHH
Q 011050 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 124 (494)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 124 (494)
..+..+..+|..+...|++++|+..|++|++++|+++.+|.++|.++...|++ ++|+
T Consensus 62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~-----------------------~~A~ 118 (296)
T PRK11189 62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNF-----------------------DAAY 118 (296)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCH-----------------------HHHH
Confidence 44677999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCc
Q 011050 125 KDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSN 172 (494)
Q Consensus 125 ~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~ 172 (494)
..++++++++|++..+|+++|.++...|++++|+..|+++++++|++.
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~ 166 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP 166 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 999999999999999999999999999999999999999999999987
No 25
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.20 E-value=2.2e-11 Score=123.25 Aligned_cols=116 Identities=26% Similarity=0.272 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHH
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (494)
+.++...|+.+-..+.|++|+.+|.+|+.+.|+.+.+|.|+|-+|+..|.. +.|++.
T Consensus 252 ~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~l-----------------------dlAI~~ 308 (966)
T KOG4626|consen 252 LDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLL-----------------------DLAIDT 308 (966)
T ss_pred hHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccH-----------------------HHHHHH
Confidence 456667777777777777777777777777777777777777777777776 888888
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHhhh
Q 011050 127 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTT 185 (494)
Q Consensus 127 ~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~ 185 (494)
|++|++++|+++.||.++|+++-..|+..+|.+.|++||.+.|+.+++...+.++.+..
T Consensus 309 Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~ 367 (966)
T KOG4626|consen 309 YKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQ 367 (966)
T ss_pred HHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh
Confidence 88888888888888888888888888888888888888888888887777666555433
No 26
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.20 E-value=7.8e-11 Score=127.99 Aligned_cols=107 Identities=30% Similarity=0.416 Sum_probs=99.7
Q ss_pred hHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHH
Q 011050 43 RYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAEL 122 (494)
Q Consensus 43 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (494)
....+..++.+|+.+|+.|+|++|+..|++++.+.|+ +.+|.|+|.||.++|+| ++
T Consensus 123 ~~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~-----------------------~~ 178 (615)
T TIGR00990 123 RKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDW-----------------------EK 178 (615)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCH-----------------------HH
Confidence 4455778999999999999999999999999999996 78999999999999999 99
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCch
Q 011050 123 ALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNP 173 (494)
Q Consensus 123 a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~ 173 (494)
|+++++++++++|++.++|+++|.+|..+|++++|+.+|..++.+++.+..
T Consensus 179 Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~ 229 (615)
T TIGR00990 179 VVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNE 229 (615)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccH
Confidence 999999999999999999999999999999999999999988888776553
No 27
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.20 E-value=4.6e-11 Score=120.97 Aligned_cols=103 Identities=17% Similarity=0.138 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHH
Q 011050 49 DLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAE 128 (494)
Q Consensus 49 ~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 128 (494)
+....|..+-++|++++|+.+|.+||.++|..+.+|+|+|+.|-.+|+- ..|+..+.
T Consensus 390 a~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v-----------------------~~A~q~y~ 446 (966)
T KOG4626|consen 390 AHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDV-----------------------SAAIQCYT 446 (966)
T ss_pred hhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhH-----------------------HHHHHHHH
Confidence 3444555555666666666666666666666666666666666666666 77777777
Q ss_pred HHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchh
Q 011050 129 KLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPL 174 (494)
Q Consensus 129 ~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~ 174 (494)
+||+.+|.+++||-++|.+|...|+..+|++.|+.||+++|+++++
T Consensus 447 rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA 492 (966)
T KOG4626|consen 447 RAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDA 492 (966)
T ss_pred HHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchh
Confidence 7777777777777777777777777777777777777777777654
No 28
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.20 E-value=1.5e-11 Score=91.34 Aligned_cols=63 Identities=21% Similarity=0.381 Sum_probs=55.4
Q ss_pred ccccccccccccCcEEcCCCCcccHhhHHHhccCCCCCCCCCcccccCCCCCcccccHHHHHHHh
Q 011050 202 DFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLFITPRTCAVSVTLNSIIQKN 266 (494)
Q Consensus 202 ~~~C~iC~~~~~~Pv~~~cgh~fc~~Cl~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~l~~~~~~~ 266 (494)
++.|++|.+.+.+|+.++|||+||+.||..|+..+..||.|+.++. ..++.+|..+++.++.|
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~--~~~l~~~~~l~~~i~~~ 63 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLSHGTDPVTGQPLT--HEDLIPNLALKSAIQEW 63 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCC--hhhceeCHHHHHHHHhC
Confidence 4679999999999999999999999999999988788999999873 36788888888887754
No 29
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.18 E-value=1.3e-11 Score=82.84 Aligned_cols=38 Identities=50% Similarity=1.238 Sum_probs=30.4
Q ss_pred cccccccccCcEEcCCCCcccHhhHHHhccCC----CCCCCC
Q 011050 205 CTLCLKLLYEPITTPCGHSFCRSCLFQSMDRG----NKCPLC 242 (494)
Q Consensus 205 C~iC~~~~~~Pv~~~cgh~fc~~Cl~~~~~~~----~~CP~C 242 (494)
|+||+++|.+||+++|||+||.+||..++... ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999999999999999999999988743 369987
No 30
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.14 E-value=1.2e-10 Score=110.69 Aligned_cols=115 Identities=17% Similarity=0.282 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHH
Q 011050 44 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 123 (494)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 123 (494)
...+...++.|+.++.+|.|..|+.+|..|++.+|++..+++.||..|..+|+- ..|
T Consensus 35 ~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGks-----------------------k~a 91 (504)
T KOG0624|consen 35 PADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKS-----------------------KAA 91 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCC-----------------------ccc
Confidence 455788899999999999999999999999999999999999999999999999 899
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHH
Q 011050 124 LKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (494)
Q Consensus 124 ~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 181 (494)
+.|+.+++++.|++.-|-..+|.++..+|++++|.++|+..|+-+|++....+...++
T Consensus 92 l~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl 149 (504)
T KOG0624|consen 92 LQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKL 149 (504)
T ss_pred hhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999877665555444
No 31
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.13 E-value=3.9e-11 Score=91.49 Aligned_cols=68 Identities=26% Similarity=0.478 Sum_probs=55.1
Q ss_pred CcccccccccccccCcEEcCCCCcccHhhHHHhccC-CCCCCCCCcccccCCCCCcccccHHHHHHHhChH
Q 011050 200 TDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDR-GNKCPLCRAVLFITPRTCAVSVTLNSIIQKNFPE 269 (494)
Q Consensus 200 ~~~~~C~iC~~~~~~Pv~~~cgh~fc~~Cl~~~~~~-~~~CP~Cr~~~~~~~~~~~~~~~l~~~~~~~~p~ 269 (494)
.+.|.|+|+.++|.+||.++|||+|++.||..|+.. +..||.|+..+. ..++.+|..|++.|+.|...
T Consensus 2 P~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~--~~~l~pn~~Lk~~I~~~~~~ 70 (73)
T PF04564_consen 2 PDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLS--ESDLIPNRALKSAIEEWCAE 70 (73)
T ss_dssp SGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-S--GGGSEE-HHHHHHHHHHHHH
T ss_pred CcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCC--cccceECHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999998 778999999874 36889999999999887543
No 32
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.05 E-value=7.1e-10 Score=93.02 Aligned_cols=110 Identities=14% Similarity=0.082 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCC---cccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHH
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD---PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 123 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 123 (494)
...++..|..++..|+|++|+..|.+++...|++ ..++..+|.+++..|++ +.|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----------------------~~A 58 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKY-----------------------ADA 58 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccH-----------------------HHH
Confidence 3567889999999999999999999999999876 46888999999999999 999
Q ss_pred HHHHHHHhhccccc---hHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHH
Q 011050 124 LKDAEKLLNLQSNS---MKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQ 179 (494)
Q Consensus 124 ~~~~~~al~l~p~~---~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~ 179 (494)
+..+++++..+|++ +.+++.+|.++..+|++++|+..+.++++..|++..+..+.+
T Consensus 59 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 117 (119)
T TIGR02795 59 AKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQK 117 (119)
T ss_pred HHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHHh
Confidence 99999999999885 678999999999999999999999999999999987766544
No 33
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=2.4e-09 Score=111.05 Aligned_cols=197 Identities=17% Similarity=0.207 Sum_probs=140.1
Q ss_pred Cccccceee--eccCCCccCccccchhHHHHHHHHHhC-CceEEEEEeCCCCC------c--------c-----------
Q 011050 287 DLMPLFVMD--VVIPCQRFPLHIFEPRYRLMVRRIMEG-NHRMGMVIIDPTTG------S--------V----------- 338 (494)
Q Consensus 287 ~~lPl~~l~--v~fP~~~~pl~i~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~------~--------~----------- 338 (494)
..+|++|++ ++|||-..++.+..++..+++++.+.. ...+|+++.+++.+ . .
T Consensus 67 ~~l~~Lpi~~~pL~PGf~~~i~v~~~~~~~~i~~~l~~~qpyiG~fl~kdd~~~~~~~t~~~~vyi~~~~~~~~~~~~~l 146 (906)
T KOG2004|consen 67 PRLPALPITRGPLFPGFYKRIEVKSPKVLALIREKLRRQQPYIGAFLLKDDSSGDSVITSINEVYILEVFPGKDKLRMVL 146 (906)
T ss_pred cccceeeccCCCcCCCceeEEEecCHHHHHHHHHHHHhcCcccceeeeccCCCCCcceeeccccceeeeecCCcchhhhh
Confidence 358899986 999999999999999999999998875 45678887743211 0 0
Q ss_pred --cc---ccceEEEEEeeecCCceEEEEEEeccceEEeeeecCCC--eeEEEEEEecCCCCCCcccHHhHHHHHHHHHHH
Q 011050 339 --AD---FACEVEITECEPLPDGRFVLEIESRRRFRILRSWDQDG--YRVAEIEWVQDIHPEGVEDRADLQDLTNNAAEY 411 (494)
Q Consensus 339 --~~---iG~~~~I~~~~~~~dg~~~v~~~g~~R~~i~~~~~~~~--~~~a~ve~l~d~~~~~~~~~~~l~~l~~~~~~~ 411 (494)
+. +++++.|.+......+.+.+.+.|.+|+++.+...+.+ .+..+++.+.+.+.+.. +++.++...+...
T Consensus 147 ~~hRr~~~~~~~~~~~g~~~~~~~~~~~~~~~~r~~i~e~~~e~~~~vl~v~v~~v~~e~~~~~---~~~ka~~~ei~~t 223 (906)
T KOG2004|consen 147 YPHRRIRITELAPISEGKEDAEVEYSLLVTGLSRLNITEMKEEKEAEVLSVEVENVKDEPFKKD---EEIKALTSEILKT 223 (906)
T ss_pred hhhhheeeeeeccccccccccccceeecccccccccchhhhccccCCceeeeeecccCCccCcc---hHHHHHHHHHHHH
Confidence 11 11122222211113567778888889999988776533 45566666665544422 3377888888888
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhhhhcCCCCCCCcchhHHHHHhcCCCChHHHhhhccCCCHHHHHHHHHHHHHhhhccc
Q 011050 412 ARLWLRREKESARQDRRRLEKLLNVEVMMPPSQDPERFSFWLATLSDRRPSERLELLRIRDTRERIRRGLIFLRAEEQGC 491 (494)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~ia~~l~l~~~~kq~LLe~~d~~~Rl~~l~~~L~~~~~~~ 491 (494)
+.+++..+.-...... .+.. .....+|..|+|+.|+....+..+.|++|+..|+.+||++.+.+|.++.++.
T Consensus 224 ~rdii~~n~l~r~~v~----~~~~----~~~~~~~~~LaD~~aai~~~~~~elq~vL~~~di~~Rl~~al~llkke~e~~ 295 (906)
T KOG2004|consen 224 LRDIIAVNSLFREQVA----TLSQ----LIVEDNPIKLADFGAAISGAEFHELQEVLEETDIEKRLEKALELLKKELELA 295 (906)
T ss_pred HHHHHHhhHHHHHHHH----HHHH----HhcccChhHHHHHHHHHhccCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 8877776543332211 1211 2346889999999999999999999999999999999999999999999887
Q ss_pred cCC
Q 011050 492 RLQ 494 (494)
Q Consensus 492 ~~~ 494 (494)
+||
T Consensus 296 klq 298 (906)
T KOG2004|consen 296 KLQ 298 (906)
T ss_pred HHH
Confidence 765
No 34
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.01 E-value=1.3e-09 Score=98.81 Aligned_cols=108 Identities=19% Similarity=0.137 Sum_probs=100.4
Q ss_pred hhhHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhH
Q 011050 41 WDRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHA 120 (494)
Q Consensus 41 ~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (494)
.+....+....+.|..|+..||+..|...+.+||+.+|++..+|..||..|.+.|+.
T Consensus 29 ~~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~----------------------- 85 (250)
T COG3063 29 TDRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGEN----------------------- 85 (250)
T ss_pred ccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCh-----------------------
Confidence 445556788899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCc
Q 011050 121 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSN 172 (494)
Q Consensus 121 ~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~ 172 (494)
+.|-+.|++|++++|++...+.+.|.-++..|+|++|...|++|+. +|...
T Consensus 86 ~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~-~P~Y~ 136 (250)
T COG3063 86 DLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALA-DPAYG 136 (250)
T ss_pred hhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHh-CCCCC
Confidence 9999999999999999999999999999999999999999999987 56543
No 35
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.00 E-value=3.2e-10 Score=85.75 Aligned_cols=67 Identities=27% Similarity=0.461 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHH-hhhccCCCCCccccccCCCCCchhHHHHH
Q 011050 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRIS-QFLKHRPPSASEYRPLNGLDPTTHAELAL 124 (494)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 124 (494)
++..+...|..++..|+|++|+..|++|++++|+++.+|.++|.+|..+| ++ .+|+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~-----------------------~~A~ 58 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDY-----------------------EEAI 58 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHH-----------------------HHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccH-----------------------HHHH
Confidence 46789999999999999999999999999999999999999999999999 89 9999
Q ss_pred HHHHHHhhccc
Q 011050 125 KDAEKLLNLQS 135 (494)
Q Consensus 125 ~~~~~al~l~p 135 (494)
.+++++++++|
T Consensus 59 ~~~~~al~l~P 69 (69)
T PF13414_consen 59 EDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHST
T ss_pred HHHHHHHHcCc
Confidence 99999999998
No 36
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.99 E-value=3.7e-09 Score=83.27 Aligned_cols=99 Identities=28% Similarity=0.447 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHH
Q 011050 49 DLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAE 128 (494)
Q Consensus 49 ~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 128 (494)
.+...|..++..|++++|+..+.++++..|.+..++..+|.++...+++ ++|+..++
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~a~~~~~ 58 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKY-----------------------EEALEDYE 58 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHH-----------------------HHHHHHHH
Confidence 3567899999999999999999999999999999999999999999999 99999999
Q ss_pred HHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCC
Q 011050 129 KLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPF 170 (494)
Q Consensus 129 ~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~ 170 (494)
+++...|.+..+++.+|.++...|++++|...+.++++.+|.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 59 KALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred HHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 999999999999999999999999999999999999988874
No 37
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.96 E-value=5.8e-10 Score=84.31 Aligned_cols=67 Identities=22% Similarity=0.298 Sum_probs=64.2
Q ss_pred CcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHH-HHHHHH
Q 011050 80 DPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLE-RYDMAR 158 (494)
Q Consensus 80 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~-~~~~A~ 158 (494)
++.+|.++|.+++..++| ++|+..++++++++|+++.+|+++|.+|..+| ++++|+
T Consensus 2 ~a~~~~~~g~~~~~~~~~-----------------------~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~ 58 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDY-----------------------EEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAI 58 (69)
T ss_dssp SHHHHHHHHHHHHHTTHH-----------------------HHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCH-----------------------HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHH
Confidence 456788999999999999 99999999999999999999999999999999 899999
Q ss_pred HHHHccccCCC
Q 011050 159 DAILSGLQVDP 169 (494)
Q Consensus 159 ~~~~~al~l~p 169 (494)
.+++++++++|
T Consensus 59 ~~~~~al~l~P 69 (69)
T PF13414_consen 59 EDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHST
T ss_pred HHHHHHHHcCc
Confidence 99999999998
No 38
>smart00464 LON Found in ATP-dependent protease La (LON). N-terminal domain of the ATP-dependent protease La (LON), present also in other bacterial ORFs.
Probab=98.96 E-value=1.8e-09 Score=86.68 Aligned_cols=87 Identities=21% Similarity=0.358 Sum_probs=72.8
Q ss_pred cccceee--eccCCCccCccccchhHHHHHHHHHhCCc--eEEEEEeCCCCCccccccceEEEEEeeecCCceEEEEEEe
Q 011050 289 MPLFVMD--VVIPCQRFPLHIFEPRYRLMVRRIMEGNH--RMGMVIIDPTTGSVADFACEVEITECEPLPDGRFVLEIES 364 (494)
Q Consensus 289 lPl~~l~--v~fP~~~~pl~i~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~iG~~~~I~~~~~~~dg~~~v~~~g 364 (494)
+|++|++ |+|||+..|+.+++++++.++++++++++ .++++++++.. .+
T Consensus 2 lpviPl~~~vlfP~~~~pl~v~~~~~i~~i~~~~~~~~~~~i~~~~~~~~~-----~~---------------------- 54 (92)
T smart00464 2 LPLLPIRRRPLFPGFVLPIPVKRPKSVAAIKEALRRSQPYVIVFLLQDDPT-----ET---------------------- 54 (92)
T ss_pred ceEEEcCCCccCCCceEEEEeCCHHHHHHHHHHHhcCCCeEEEEEEccCCC-----CC----------------------
Confidence 6899997 99999999999999999999999998776 44554443221 11
Q ss_pred ccceEEeeeecCCCeeEEEEEEecCCCCCCcccHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCCCCC
Q 011050 365 RRRFRILRSWDQDGYRVAEIEWVQDIHPEGVEDRADLQDLTNNAAEYARLWLRREKESARQDRRRLEKLLNVEVMMPPSQ 444 (494)
Q Consensus 365 ~~R~~i~~~~~~~~~~~a~ve~l~d~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 444 (494)
T Consensus 55 -------------------------------------------------------------------------------- 54 (92)
T smart00464 55 -------------------------------------------------------------------------------- 54 (92)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcchhHHHHHhcCCCChHHHhhhccCCCHHHHHHHHHHH
Q 011050 445 DPERFSFWLATLSDRRPSERLELLRIRDTRERIRRGLIF 483 (494)
Q Consensus 445 ~~~~l~~~ia~~l~l~~~~kq~LLe~~d~~~Rl~~l~~~ 483 (494)
|..++||+|+.++++.++||+|||+.|+.+|++.+++|
T Consensus 55 -~~~~~~~~a~~~~~~~~~~q~lL~~~~~~~Rl~~~~~~ 92 (92)
T smart00464 55 -PEPLSDTIAALMPLELHEKQELLELEGTNKRLEKVIKL 92 (92)
T ss_pred -chhhhHHHhhcccccHHHHHHHHhcccHHHHHHHHhcC
Confidence 24589999999999999999999999999999998764
No 39
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.96 E-value=2.3e-09 Score=116.52 Aligned_cols=114 Identities=17% Similarity=0.159 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHH
Q 011050 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 124 (494)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 124 (494)
..+..+...|..++..|++++|+..|.++++++|++...|.++|.++..+|++ ++|+
T Consensus 329 ~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~-----------------------~eA~ 385 (615)
T TIGR00990 329 KEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDP-----------------------DKAE 385 (615)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCH-----------------------HHHH
Confidence 34456778899999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHH
Q 011050 125 KDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (494)
Q Consensus 125 ~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 181 (494)
..++++++++|+++.+|+.+|.+|..+|++++|+.+|+++++++|++..++..+..+
T Consensus 386 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~ 442 (615)
T TIGR00990 386 EDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVT 442 (615)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988766554443
No 40
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.96 E-value=4.3e-10 Score=99.87 Aligned_cols=49 Identities=37% Similarity=0.943 Sum_probs=42.3
Q ss_pred CCcccccccccccccCcEEcCCCCcccHhhHHHhccC----------------CCCCCCCCcccc
Q 011050 199 RTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDR----------------GNKCPLCRAVLF 247 (494)
Q Consensus 199 ~~~~~~C~iC~~~~~~Pv~~~cgh~fc~~Cl~~~~~~----------------~~~CP~Cr~~~~ 247 (494)
....+.|+||++.+.+|+.++|||.||+.||..|+.. ...||.||..+.
T Consensus 15 ~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is 79 (193)
T PLN03208 15 SGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS 79 (193)
T ss_pred CCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence 3467999999999999999999999999999998642 246999999874
No 41
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.94 E-value=5.9e-10 Score=111.02 Aligned_cols=67 Identities=25% Similarity=0.614 Sum_probs=58.9
Q ss_pred CCCcccccccccccccCcEEcCCCCcccHhhHHHhccCCCCCCCCCcccccCCCCCcccccHHHHHHHh
Q 011050 198 ERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLFITPRTCAVSVTLNSIIQKN 266 (494)
Q Consensus 198 ~~~~~~~C~iC~~~~~~Pv~~~cgh~fc~~Cl~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~l~~~~~~~ 266 (494)
.....+.|+||.+.+.+|+.++|||+||..||..++.....||.|+..+. ...+..|..+.++++.|
T Consensus 22 ~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~--~~~Lr~N~~L~~iVe~~ 88 (397)
T TIGR00599 22 PLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQ--ESKLRSNWLVSEIVESF 88 (397)
T ss_pred ccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCCCCCCCCCCccc--cccCccchHHHHHHHHH
Confidence 44567899999999999999999999999999999987778999999874 24678899999999876
No 42
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=4e-10 Score=101.68 Aligned_cols=50 Identities=40% Similarity=1.007 Sum_probs=44.2
Q ss_pred CCCcccccccccccccCcEEcCCCCcccHhhHHHhccC---CCCCCCCCcccc
Q 011050 198 ERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDR---GNKCPLCRAVLF 247 (494)
Q Consensus 198 ~~~~~~~C~iC~~~~~~Pv~~~cgh~fc~~Cl~~~~~~---~~~CP~Cr~~~~ 247 (494)
.....|+|.||++.-++||.+.|||.|||.||.+|+.. ...||+|+..+.
T Consensus 43 ~~~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs 95 (230)
T KOG0823|consen 43 RDGGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVS 95 (230)
T ss_pred CCCCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccc
Confidence 35678999999999999999999999999999999973 345999999873
No 43
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=5.1e-10 Score=103.94 Aligned_cols=49 Identities=39% Similarity=0.903 Sum_probs=44.7
Q ss_pred CCcccccccccccccCcEEcCCCCcccHhhHHHhccCCCCCCCCCcccc
Q 011050 199 RTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 247 (494)
Q Consensus 199 ~~~~~~C~iC~~~~~~Pv~~~cgh~fc~~Cl~~~~~~~~~CP~Cr~~~~ 247 (494)
......|.+|++..++|.-+||||.||++||..|......||+||..+.
T Consensus 236 ~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~ 284 (293)
T KOG0317|consen 236 PEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKAECPLCREKFQ 284 (293)
T ss_pred CCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccccCCCcccccCC
Confidence 4455899999999999999999999999999999998888999999874
No 44
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=6.8e-09 Score=103.11 Aligned_cols=106 Identities=20% Similarity=0.222 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHH
Q 011050 44 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 123 (494)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 123 (494)
...+..+..+|.-+|-.|++-.|...++.+|.++|.+..+|..||.+|+...+- .+.
T Consensus 323 e~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~-----------------------~~~ 379 (606)
T KOG0547|consen 323 EYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQS-----------------------EKM 379 (606)
T ss_pred HHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhcc-----------------------HHH
Confidence 344667777788888888888888888888888887777777888888777776 777
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCc
Q 011050 124 LKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSN 172 (494)
Q Consensus 124 ~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~ 172 (494)
..++.+|.++||+++..||.+|+.++.+++|++|+++|++++.++|++.
T Consensus 380 ~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~ 428 (606)
T KOG0547|consen 380 WKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENA 428 (606)
T ss_pred HHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhh
Confidence 7788888888888888888888888888888888888888888888765
No 45
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.92 E-value=2.1e-09 Score=110.51 Aligned_cols=117 Identities=14% Similarity=0.183 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHH
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (494)
-+.|-..||.|-.+++++.||.+|.+|+++||+++.+|.-.|--+....+| +.|..-
T Consensus 421 PesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~-----------------------d~a~~~ 477 (638)
T KOG1126|consen 421 PESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEF-----------------------DKAMKS 477 (638)
T ss_pred cHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHH-----------------------HhHHHH
Confidence 467888999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHhhhh
Q 011050 127 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTA 186 (494)
Q Consensus 127 ~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~ 186 (494)
|++|+..+|.+..|||-+|.+|.++++++.|.-+|++|+.+||.|..+.--+.....+++
T Consensus 478 fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k 537 (638)
T KOG1126|consen 478 FRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLK 537 (638)
T ss_pred HHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhh
Confidence 999999999999999999999999999999999999999999999976555544444443
No 46
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.92 E-value=3.8e-10 Score=106.04 Aligned_cols=65 Identities=25% Similarity=0.648 Sum_probs=57.7
Q ss_pred CcccccccccccccCcEEcCCCCcccHhhHHHhccCCCCCCCCCcccccCCCCCcccccHHHHHHHh
Q 011050 200 TDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLFITPRTCAVSVTLNSIIQKN 266 (494)
Q Consensus 200 ~~~~~C~iC~~~~~~Pv~~~cgh~fc~~Cl~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~l~~~~~~~ 266 (494)
...+.|-||+++|..|+.+||||+||.-||..++.....||.|+.++. ...++.|+.+.++++.|
T Consensus 21 D~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~--Es~Lr~n~il~Eiv~S~ 85 (442)
T KOG0287|consen 21 DDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVT--ESDLRNNRILDEIVKSL 85 (442)
T ss_pred HHHHHHhHHHHHhcCceeccccchHHHHHHHHHhccCCCCCceecccc--hhhhhhhhHHHHHHHHH
Confidence 355789999999999999999999999999999999999999999874 34778888999988865
No 47
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.92 E-value=5.4e-10 Score=79.75 Aligned_cols=58 Identities=29% Similarity=0.788 Sum_probs=32.5
Q ss_pred ccccccccccccCcEE-cCCCCcccHhhHHHhccCCCCCCCCCcccccCCCCCcccccHHHHH
Q 011050 202 DFDCTLCLKLLYEPIT-TPCGHSFCRSCLFQSMDRGNKCPLCRAVLFITPRTCAVSVTLNSII 263 (494)
Q Consensus 202 ~~~C~iC~~~~~~Pv~-~~cgh~fc~~Cl~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~l~~~~ 263 (494)
.+.|++|.+++++||. ..|.|.||+.|+.+.+. ..||+|+.+. ..+++..|+.|++++
T Consensus 7 lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Pa--w~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 7 LLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG--SECPVCHTPA--WIQDIQINRQLDSMI 65 (65)
T ss_dssp TTS-SSS-S--SS-B---SSS--B-TTTGGGGTT--TB-SSS--B---S-SS----HHHHHHH
T ss_pred hcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC--CCCCCcCChH--HHHHHHhhhhhhccC
Confidence 4679999999999986 59999999999988654 4699999986 347899999998875
No 48
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.91 E-value=9.5e-09 Score=84.76 Aligned_cols=110 Identities=19% Similarity=0.160 Sum_probs=97.9
Q ss_pred chhhHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchh
Q 011050 40 PWDRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTH 119 (494)
Q Consensus 40 ~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (494)
....++....+..+|..+...|+.+.|+..|.+|+.+.|.++++|.|||+++.-.|+-
T Consensus 36 ~~~~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~---------------------- 93 (175)
T KOG4555|consen 36 DTQAIKASRELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDD---------------------- 93 (175)
T ss_pred chHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCCh----------------------
Confidence 3445566678888999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHhhcccc----chHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCc
Q 011050 120 AELALKDAEKLLNLQSN----SMKSHLLKANALILLERYDMARDAILSGLQVDPFSN 172 (494)
Q Consensus 120 ~~~a~~~~~~al~l~p~----~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~ 172 (494)
.+|++|+++|+++... -..+|..+|..|..+|+-++|..+|..|-++-..+.
T Consensus 94 -e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~FA 149 (175)
T KOG4555|consen 94 -EEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKFA 149 (175)
T ss_pred -HHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHHH
Confidence 9999999999999754 346899999999999999999999999988765544
No 49
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.89 E-value=1.1e-09 Score=111.01 Aligned_cols=100 Identities=17% Similarity=0.162 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHH
Q 011050 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDA 127 (494)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 127 (494)
.-....|..|+-.|+|++|+.+|+.||..+|+|..+|..+|..+..-.+. .+|+..|
T Consensus 431 dvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s-----------------------~EAIsAY 487 (579)
T KOG1125|consen 431 DVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRS-----------------------EEAISAY 487 (579)
T ss_pred hHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCccc-----------------------HHHHHHH
Confidence 33445788899999999999999999999999999999999999888888 9999999
Q ss_pred HHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCC
Q 011050 128 EKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPF 170 (494)
Q Consensus 128 ~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~ 170 (494)
++|++|.|.++.+.|++|.+++.+|.|++|+.+|..||.+.+.
T Consensus 488 ~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 488 NRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred HHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999999999999999876
No 50
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.89 E-value=1.1e-09 Score=104.57 Aligned_cols=108 Identities=18% Similarity=0.293 Sum_probs=101.7
Q ss_pred chhhHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchh
Q 011050 40 PWDRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTH 119 (494)
Q Consensus 40 ~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (494)
+.+....+...+.++..++..|+++.||.+|+.||.++|..+.+|.+||.+++++++.
T Consensus 107 Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp---------------------- 164 (377)
T KOG1308|consen 107 TEEMMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKP---------------------- 164 (377)
T ss_pred hHHHHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCC----------------------
Confidence 3456777888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCC
Q 011050 120 AELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPF 170 (494)
Q Consensus 120 ~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~ 170 (494)
..|++||..|+.++|+..+.|-++|.+...+|++++|..++..+.+++=+
T Consensus 165 -~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 165 -NAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYD 214 (377)
T ss_pred -chhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999887643
No 51
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.88 E-value=6.1e-09 Score=116.85 Aligned_cols=112 Identities=9% Similarity=-0.057 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHH
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (494)
...+...|..+.+.|++++|+..|.+++.++|+++.++.++|.++...|++ ++|+..
T Consensus 609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~-----------------------eeAi~~ 665 (987)
T PRK09782 609 ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDI-----------------------AQSREM 665 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH-----------------------HHHHHH
Confidence 355677888999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHH
Q 011050 127 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (494)
Q Consensus 127 ~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 181 (494)
++++++++|+++.+++.+|.+|..+|++++|+..|+++++++|++..+......+
T Consensus 666 l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~ 720 (987)
T PRK09782 666 LERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQ 720 (987)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHH
Confidence 9999999999999999999999999999999999999999999998776544433
No 52
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.87 E-value=1.2e-09 Score=72.44 Aligned_cols=38 Identities=47% Similarity=1.351 Sum_probs=33.4
Q ss_pred cccccccccCc-EEcCCCCcccHhhHHHhccCCCCCCCC
Q 011050 205 CTLCLKLLYEP-ITTPCGHSFCRSCLFQSMDRGNKCPLC 242 (494)
Q Consensus 205 C~iC~~~~~~P-v~~~cgh~fc~~Cl~~~~~~~~~CP~C 242 (494)
|+||++.+.+| +.++|||+||..|+..++..+..||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 89999999999 578999999999999999888889987
No 53
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.86 E-value=1.8e-09 Score=85.07 Aligned_cols=82 Identities=27% Similarity=0.431 Sum_probs=73.9
Q ss_pred HhcChHHHHHHHHHHhccCCC--CcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhcccc
Q 011050 59 RESNFEEAISNYSRANNIKPG--DPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSN 136 (494)
Q Consensus 59 ~~~~~~~Ai~~y~~al~~~p~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~ 136 (494)
.+|+|++|+..|.++++.+|. +..++.++|.||++.|+| .+|+..+++ ...++.
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y-----------------------~~A~~~~~~-~~~~~~ 56 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKY-----------------------EEAIELLQK-LKLDPS 56 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHH-----------------------HHHHHHHHC-HTHHHC
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCH-----------------------HHHHHHHHH-hCCCCC
Confidence 368999999999999999995 567788899999999999 999999999 999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 011050 137 SMKSHLLKANALILLERYDMARDAILSG 164 (494)
Q Consensus 137 ~~~a~~~~g~~~~~~~~~~~A~~~~~~a 164 (494)
++..++.+|.++..+|+|++|+..|.+|
T Consensus 57 ~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 57 NPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 9999999999999999999999999864
No 54
>PRK15331 chaperone protein SicA; Provisional
Probab=98.86 E-value=1.8e-08 Score=87.69 Aligned_cols=117 Identities=12% Similarity=0.045 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHH
Q 011050 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 124 (494)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 124 (494)
.........|..+|..|++++|...|+-...++|.++..+.++|.|+..+++| ++|+
T Consensus 35 ~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y-----------------------~~Ai 91 (165)
T PRK15331 35 DMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQF-----------------------QKAC 91 (165)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHH-----------------------HHHH
Confidence 34678889999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHhhh
Q 011050 125 KDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTT 185 (494)
Q Consensus 125 ~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~ 185 (494)
..|..|..++++++..+|..|.||..+|+.+.|+..|..++. .|.+..++..-+.+-+.+
T Consensus 92 ~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~L~~l 151 (165)
T PRK15331 92 DLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRAKALVYLEAL 151 (165)
T ss_pred HHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998 577666555444333333
No 55
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.84 E-value=1.1e-08 Score=92.47 Aligned_cols=107 Identities=18% Similarity=0.211 Sum_probs=96.7
Q ss_pred hhHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCC---cccccChhHHHHHHHhhhccCCCCCccccccCCCCCch
Q 011050 42 DRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD---PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTT 118 (494)
Q Consensus 42 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (494)
.....+..+...|..+...|+|++|+.+|.+++...|+. ..++.++|.++..+|++
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~--------------------- 88 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEH--------------------- 88 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCH---------------------
Confidence 345567888999999999999999999999999887764 46899999999999999
Q ss_pred hHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHH--------------HHHHHHHHHccccCCCCC
Q 011050 119 HAELALKDAEKLLNLQSNSMKSHLLKANALILLER--------------YDMARDAILSGLQVDPFS 171 (494)
Q Consensus 119 ~~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~--------------~~~A~~~~~~al~l~p~~ 171 (494)
++|+..+.++++.+|++..++..+|.+|...|+ +++|++.++++++++|++
T Consensus 89 --~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 89 --DKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred --HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 999999999999999999999999999988776 688899999999999887
No 56
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=1.7e-08 Score=99.67 Aligned_cols=121 Identities=20% Similarity=0.156 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHH
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (494)
...|...|-.|...++-..|+..|++|++++|.|..+|+++|++|.-++-. -=|+-.
T Consensus 364 ~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh-----------------------~YaLyY 420 (559)
T KOG1155|consen 364 LSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMH-----------------------FYALYY 420 (559)
T ss_pred hHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcch-----------------------HHHHHH
Confidence 456667788888888888888888888888888888888888888888776 668888
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHhhhhhhhc
Q 011050 127 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASLIG 190 (494)
Q Consensus 127 ~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~ 190 (494)
+++|+.+.|++...|..+|.||..+++.++|+..|.+|+...-.+..+...+.++.+.+....+
T Consensus 421 fqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~e 484 (559)
T KOG1155|consen 421 FQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNE 484 (559)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHH
Confidence 8888888888888888888888888888888888888888877777776667666666655443
No 57
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.83 E-value=8.5e-09 Score=90.15 Aligned_cols=93 Identities=15% Similarity=0.085 Sum_probs=83.6
Q ss_pred HHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHH
Q 011050 67 ISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKAN 146 (494)
Q Consensus 67 i~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~a~~~~g~ 146 (494)
...|.+|++++|++ +.++|.++...|++ .+|+..+++++.++|.+..+|+.+|.
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~-----------------------~~A~~~~~~al~~~P~~~~a~~~lg~ 66 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDY-----------------------SRAVIDFSWLVMAQPWSWRAHIALAG 66 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCH-----------------------HHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 45799999999986 56789999999999 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHhhh
Q 011050 147 ALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTT 185 (494)
Q Consensus 147 ~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~ 185 (494)
++..+|++++|+..|.++++++|++..++..+..+-..+
T Consensus 67 ~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 67 TWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 999999999999999999999999998877665544433
No 58
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.82 E-value=1.5e-08 Score=96.33 Aligned_cols=117 Identities=15% Similarity=0.167 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCc---ccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhH
Q 011050 44 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP---IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHA 120 (494)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (494)
...+..++..|..++..|+|++|+..|.+++...|+++ .++..+|.+++..+++
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~----------------------- 86 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDY----------------------- 86 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCH-----------------------
Confidence 44567889999999999999999999999999999876 5789999999999999
Q ss_pred HHHHHHHHHHhhccccchH---HHHHHHHHHHHH--------HHHHHHHHHHHccccCCCCCchhHHHHHHHHh
Q 011050 121 ELALKDAEKLLNLQSNSMK---SHLLKANALILL--------ERYDMARDAILSGLQVDPFSNPLQASLQNLER 183 (494)
Q Consensus 121 ~~a~~~~~~al~l~p~~~~---a~~~~g~~~~~~--------~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~ 183 (494)
++|+..++++++.+|+++. +++.+|.++... |++++|+..|+++++.+|++......+..+..
T Consensus 87 ~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~ 160 (235)
T TIGR03302 87 AEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY 160 (235)
T ss_pred HHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH
Confidence 9999999999999998876 799999999876 89999999999999999999877666654433
No 59
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.82 E-value=6.6e-09 Score=106.92 Aligned_cols=124 Identities=18% Similarity=0.184 Sum_probs=106.1
Q ss_pred hHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHH
Q 011050 43 RYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAEL 122 (494)
Q Consensus 43 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (494)
..++..+|+..|..|.++++|+.|.-+|.+|++++|.+..+....|..+.++|+. ++
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~-----------------------d~ 541 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRK-----------------------DK 541 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhh-----------------------hH
Confidence 3455678888888888888888888888888888888888888888888888888 89
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHhhhhhhh
Q 011050 123 ALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASLI 189 (494)
Q Consensus 123 a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~ 189 (494)
|+..+++|+-+||.++-..|.+|.++..+++|.+|+..+++.-++.|++..+...+.++-+.+.+..
T Consensus 542 AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~ 608 (638)
T KOG1126|consen 542 ALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTD 608 (638)
T ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccch
Confidence 9999999999999999999999999999999999999999988889998888888877777765544
No 60
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.80 E-value=1.6e-08 Score=99.67 Aligned_cols=139 Identities=14% Similarity=0.041 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCC---------CCccccc------
Q 011050 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPP---------SASEYRP------ 110 (494)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~---------~~~~~~~------ 110 (494)
.+..+...|..+...|+|++|+..|.+|++++|++..+|.++|.+++..|++-++... .+.....
T Consensus 97 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~ 176 (296)
T PRK11189 97 MADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAE 176 (296)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3567888999999999999999999999999999999999999999887776433210 0100000
Q ss_pred ---------------cCCCCCchhH-------------HHHHHHH----HHHhhccccchHHHHHHHHHHHHHHHHHHHH
Q 011050 111 ---------------LNGLDPTTHA-------------ELALKDA----EKLLNLQSNSMKSHLLKANALILLERYDMAR 158 (494)
Q Consensus 111 ---------------~~~~~~~~~~-------------~~a~~~~----~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~ 158 (494)
....++..+. .+++..+ +.+++++|....+|+.+|.+|..+|++++|+
T Consensus 177 ~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~ 256 (296)
T PRK11189 177 SKLDPKQAKENLKQRYEKLDKEQWGWNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAA 256 (296)
T ss_pred ccCCHHHHHHHHHHHHhhCCccccHHHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 0000111100 1122222 2233556667789999999999999999999
Q ss_pred HHHHccccCCC-CCchhHHHHHHHHhh
Q 011050 159 DAILSGLQVDP-FSNPLQASLQNLERT 184 (494)
Q Consensus 159 ~~~~~al~l~p-~~~~~~~~~~~~~~~ 184 (494)
.+|++|++++| ++.+.+-++-++.+.
T Consensus 257 ~~~~~Al~~~~~~~~e~~~~~~e~~~~ 283 (296)
T PRK11189 257 ALFKLALANNVYNFVEHRYALLELALL 283 (296)
T ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence 99999999997 666666555555444
No 61
>PRK12370 invasion protein regulator; Provisional
Probab=98.80 E-value=1.4e-08 Score=108.83 Aligned_cols=92 Identities=15% Similarity=0.098 Sum_probs=88.0
Q ss_pred cChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhccccchHH
Q 011050 61 SNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKS 140 (494)
Q Consensus 61 ~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~a 140 (494)
+++++|+..+.+|++++|+++.+|..+|.++...|++ ++|+..+++|++++|+++.+
T Consensus 318 ~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~-----------------------~~A~~~~~~Al~l~P~~~~a 374 (553)
T PRK12370 318 NAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY-----------------------IVGSLLFKQANLLSPISADI 374 (553)
T ss_pred hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH-----------------------HHHHHHHHHHHHhCCCCHHH
Confidence 5589999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhH
Q 011050 141 HLLKANALILLERYDMARDAILSGLQVDPFSNPLQ 175 (494)
Q Consensus 141 ~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~ 175 (494)
|+.+|.+|..+|++++|+..++++++++|.+....
T Consensus 375 ~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~ 409 (553)
T PRK12370 375 KYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAG 409 (553)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhH
Confidence 99999999999999999999999999999987543
No 62
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=3.7e-08 Score=93.53 Aligned_cols=118 Identities=16% Similarity=0.084 Sum_probs=103.5
Q ss_pred hHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHH
Q 011050 43 RYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAEL 122 (494)
Q Consensus 43 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (494)
.+.+++.|...|..|+..|++..|...|.+|+++.|+++.++..+|.+++....- ....+
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~--------------------~~ta~ 211 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQ--------------------QMTAK 211 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC--------------------cccHH
Confidence 3446788999999999999999999999999999999999999999888765542 12278
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHH
Q 011050 123 ALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQN 180 (494)
Q Consensus 123 a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~ 180 (494)
+...+++++.+||++..+.+.+|..++..|+|.+|+..++..++..|.+..-...++.
T Consensus 212 a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~ 269 (287)
T COG4235 212 ARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIER 269 (287)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 8899999999999999999999999999999999999999999999988765544443
No 63
>PRK12370 invasion protein regulator; Provisional
Probab=98.79 E-value=1.3e-08 Score=109.00 Aligned_cols=113 Identities=14% Similarity=-0.052 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHH
Q 011050 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (494)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (494)
.+..+...|..+...|++++|+..|.+|++++|+++.+|+++|.++...|++ ++|+.
T Consensus 337 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~-----------------------~eAi~ 393 (553)
T PRK12370 337 NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQL-----------------------EEALQ 393 (553)
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH-----------------------HHHHH
Confidence 3455677888999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCC-CCCchhHHHHHHH
Q 011050 126 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVD-PFSNPLQASLQNL 181 (494)
Q Consensus 126 ~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~-p~~~~~~~~~~~~ 181 (494)
.++++++++|.++.+++.++.+++..|++++|+..++++++.+ |+++.+...+..+
T Consensus 394 ~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~ 450 (553)
T PRK12370 394 TINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMF 450 (553)
T ss_pred HHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHH
Confidence 9999999999999888888888888999999999999999875 6777665555444
No 64
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.76 E-value=5.3e-08 Score=92.94 Aligned_cols=117 Identities=19% Similarity=0.208 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHH
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (494)
...+..+...++..||++.||...+..|++.|.++.+|..||.||...|+. ..|+.|
T Consensus 155 ~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~-----------------------k~AI~D 211 (504)
T KOG0624|consen 155 HWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEP-----------------------KKAIHD 211 (504)
T ss_pred HHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcH-----------------------HHHHHH
Confidence 445677888899999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHhhhh
Q 011050 127 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTA 186 (494)
Q Consensus 127 ~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~ 186 (494)
.+.+-.+..++..++|..+..++..|+.+.++...+++|++||+++..-...+.+.+..+
T Consensus 212 lk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K 271 (504)
T KOG0624|consen 212 LKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVK 271 (504)
T ss_pred HHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999977665555544443
No 65
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.76 E-value=3e-08 Score=107.33 Aligned_cols=110 Identities=12% Similarity=-0.016 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHH
Q 011050 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (494)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (494)
.+..+...|......|.+++|...+..+++++|++..++.++|.++.+.+++ ++|+.
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~-----------------------eeA~~ 141 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGI-----------------------EAGRA 141 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccH-----------------------HHHHH
Confidence 4667788899999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHH
Q 011050 126 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASL 178 (494)
Q Consensus 126 ~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~ 178 (494)
.++++++.+|+++.+++.+|.++..+|+|++|++.|+++++-+|++..++-..
T Consensus 142 ~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~ 194 (694)
T PRK15179 142 EIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGW 194 (694)
T ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999888887665544
No 66
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=2.7e-08 Score=98.34 Aligned_cols=112 Identities=13% Similarity=0.129 Sum_probs=104.0
Q ss_pred HHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhh
Q 011050 53 KGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLN 132 (494)
Q Consensus 53 ~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~ 132 (494)
-||-|--+++.++|+.+|++|++++|+...+|.-.|--|+.+++- ..|+..|++|++
T Consensus 336 IaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt-----------------------~AAi~sYRrAvd 392 (559)
T KOG1155|consen 336 IANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNT-----------------------HAAIESYRRAVD 392 (559)
T ss_pred ehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhccc-----------------------HHHHHHHHHHHh
Confidence 467777889999999999999999999999999999999999998 999999999999
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHhhhhh
Q 011050 133 LQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTAS 187 (494)
Q Consensus 133 l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~ 187 (494)
++|.+..|||.+|++|.-++-+.=|+=+|++|+++.|+++.++.++.++-.++..
T Consensus 393 i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~ 447 (559)
T KOG1155|consen 393 INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNR 447 (559)
T ss_pred cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999988776655543
No 67
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.74 E-value=5.2e-08 Score=87.58 Aligned_cols=107 Identities=16% Similarity=0.059 Sum_probs=92.7
Q ss_pred hHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCC---cccccChhHHHHHHHhhhccCCCCCccccccCCCCCchh
Q 011050 43 RYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD---PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTH 119 (494)
Q Consensus 43 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (494)
....+..+...|..++..|+|++|+..|.+|+.+.|+. +.+|.++|.+|...|++
T Consensus 31 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~---------------------- 88 (168)
T CHL00033 31 GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEH---------------------- 88 (168)
T ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCH----------------------
Confidence 34457788999999999999999999999999887763 35899999999999999
Q ss_pred HHHHHHHHHHHhhccccchHHHHHHHHHHH-------HHHHHH-------HHHHHHHccccCCCCCc
Q 011050 120 AELALKDAEKLLNLQSNSMKSHLLKANALI-------LLERYD-------MARDAILSGLQVDPFSN 172 (494)
Q Consensus 120 ~~~a~~~~~~al~l~p~~~~a~~~~g~~~~-------~~~~~~-------~A~~~~~~al~l~p~~~ 172 (494)
++|+..+++++.++|.+..++..+|.+|. .+|+++ +|+..|++++.++|.+.
T Consensus 89 -~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 89 -TKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred -HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 99999999999999999999999999998 556655 67777777888888654
No 68
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.73 E-value=4e-08 Score=94.29 Aligned_cols=112 Identities=7% Similarity=-0.084 Sum_probs=100.7
Q ss_pred HHHHHHHHHHH-HHhcChHHHHHHHHHHhccCCCCc---ccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHH
Q 011050 47 VFDLVQKGNRA-FRESNFEEAISNYSRANNIKPGDP---IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAEL 122 (494)
Q Consensus 47 ~~~~~~~g~~~-~~~~~~~~Ai~~y~~al~~~p~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (494)
....+..|..+ ++.|+|++|+..|.+.+...|++. .+++.+|.+|+..|+| ++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~-----------------------~~ 198 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKK-----------------------DD 198 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCH-----------------------HH
Confidence 35667777776 667999999999999999999984 7999999999999999 99
Q ss_pred HHHHHHHHhhcccc---chHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHH
Q 011050 123 ALKDAEKLLNLQSN---SMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (494)
Q Consensus 123 a~~~~~~al~l~p~---~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 181 (494)
|+..+.+++...|+ .+.+++.+|.+|..+|++++|+..|+++++..|+...+..+.+.+
T Consensus 199 A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~rL 260 (263)
T PRK10803 199 AAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKRL 260 (263)
T ss_pred HHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHHH
Confidence 99999999988776 577999999999999999999999999999999999887777666
No 69
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.73 E-value=7.2e-08 Score=89.38 Aligned_cols=117 Identities=19% Similarity=0.210 Sum_probs=107.2
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHH
Q 011050 50 LVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEK 129 (494)
Q Consensus 50 ~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 129 (494)
+...|..++..|+|..|+..+.+|..++|+|..+|+.+|.+|.++|++ +.|-..|.+
T Consensus 103 l~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~-----------------------~~Ar~ay~q 159 (257)
T COG5010 103 LAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRF-----------------------DEARRAYRQ 159 (257)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccCh-----------------------hHHHHHHHH
Confidence 344899999999999999999999999999999999999999999999 999999999
Q ss_pred HhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHhhhhhhh
Q 011050 130 LLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASLI 189 (494)
Q Consensus 130 al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~ 189 (494)
++++.|+.+..+.++|..|+..|+++.|...+..+...-+.+..+...+..+........
T Consensus 160 Al~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~ 219 (257)
T COG5010 160 ALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFR 219 (257)
T ss_pred HHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChH
Confidence 999999999999999999999999999999999998888888888887776665554443
No 70
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.73 E-value=6.9e-09 Score=72.92 Aligned_cols=45 Identities=36% Similarity=0.971 Sum_probs=40.5
Q ss_pred ccccccccccccCcEEcCCCCc-ccHhhHHHhccCCCCCCCCCccc
Q 011050 202 DFDCTLCLKLLYEPITTPCGHS-FCRSCLFQSMDRGNKCPLCRAVL 246 (494)
Q Consensus 202 ~~~C~iC~~~~~~Pv~~~cgh~-fc~~Cl~~~~~~~~~CP~Cr~~~ 246 (494)
+..|.+|++...+++.+||||. ||..|+..++.....||.||.++
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i 47 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPI 47 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhh
Confidence 5689999999999999999999 99999999999888999999976
No 71
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.73 E-value=3.4e-09 Score=72.30 Aligned_cols=40 Identities=43% Similarity=1.113 Sum_probs=34.5
Q ss_pred cccccccccc---CcEEcCCCCcccHhhHHHhccCCCCCCCCC
Q 011050 204 DCTLCLKLLY---EPITTPCGHSFCRSCLFQSMDRGNKCPLCR 243 (494)
Q Consensus 204 ~C~iC~~~~~---~Pv~~~cgh~fc~~Cl~~~~~~~~~CP~Cr 243 (494)
.|+||++.+. .++.++|||.||.+||..|+.....||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 5999999884 446789999999999999999888999997
No 72
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.72 E-value=6.3e-09 Score=95.94 Aligned_cols=46 Identities=30% Similarity=0.772 Sum_probs=43.1
Q ss_pred cccccccccccccCcEEcCCCCcccHhhHHHhccCCCCCCCCCccc
Q 011050 201 DDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVL 246 (494)
Q Consensus 201 ~~~~C~iC~~~~~~Pv~~~cgh~fc~~Cl~~~~~~~~~CP~Cr~~~ 246 (494)
.-+.|.||.+.++.|+.++|||+||.-||..++.+...||+||...
T Consensus 24 s~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~ 69 (391)
T COG5432 24 SMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQPFCPVCREDP 69 (391)
T ss_pred hHHHhhhhhheeecceecccccchhHHHHHHHhcCCCCCccccccH
Confidence 4468999999999999999999999999999999999999999874
No 73
>PLN02789 farnesyltranstransferase
Probab=98.71 E-value=6.3e-08 Score=95.73 Aligned_cols=123 Identities=15% Similarity=0.131 Sum_probs=75.7
Q ss_pred HHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHH-hhhcc-------CCCCCccccccC-------CCCCchhHHH
Q 011050 58 FRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRIS-QFLKH-------RPPSASEYRPLN-------GLDPTTHAEL 122 (494)
Q Consensus 58 ~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~-~~~~~-------~~~~~~~~~~~~-------~~~~~~~~~~ 122 (494)
...+.+++|+..++++|+++|++..+|..|+.++..++ .+.+. .....+-|+.|. .++. ....+
T Consensus 48 ~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~-~~~~~ 126 (320)
T PLN02789 48 ASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGP-DAANK 126 (320)
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCc-hhhHH
Confidence 34456666777777777777766666666666666655 22000 011222222221 1110 01145
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHH
Q 011050 123 ALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (494)
Q Consensus 123 a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 181 (494)
++..++++++.||++..+|..+|.++..+|++++|++.+.++++.||.|..++.....+
T Consensus 127 el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~v 185 (320)
T PLN02789 127 ELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFV 185 (320)
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHH
Confidence 67777788888888888888888888888888888888888888888887776554443
No 74
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.70 E-value=1.5e-08 Score=75.55 Aligned_cols=64 Identities=20% Similarity=0.236 Sum_probs=59.5
Q ss_pred ChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccc
Q 011050 86 NRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGL 165 (494)
Q Consensus 86 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al 165 (494)
.+|..++..|+| ++|+..++++++.+|+++.+++.+|.++..+|++++|+..|++++
T Consensus 2 ~~a~~~~~~g~~-----------------------~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 2 ALARALYQQGDY-----------------------DEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHHHHHCTHH-----------------------HHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred hHHHHHHHcCCH-----------------------HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 468889999999 999999999999999999999999999999999999999999999
Q ss_pred cCCCCCc
Q 011050 166 QVDPFSN 172 (494)
Q Consensus 166 ~l~p~~~ 172 (494)
+++|+++
T Consensus 59 ~~~P~~p 65 (65)
T PF13432_consen 59 ELDPDNP 65 (65)
T ss_dssp HHSTT-H
T ss_pred HHCcCCC
Confidence 9999874
No 75
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.69 E-value=9.3e-08 Score=89.24 Aligned_cols=103 Identities=17% Similarity=0.124 Sum_probs=96.8
Q ss_pred hHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHH
Q 011050 43 RYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAEL 122 (494)
Q Consensus 43 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (494)
....+..+...|..++..|+|++|+..|.++++.+|++..++..+|.++...|++ ++
T Consensus 27 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~-----------------------~~ 83 (234)
T TIGR02521 27 RNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGEL-----------------------EK 83 (234)
T ss_pred CCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCH-----------------------HH
Confidence 3445778889999999999999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCC
Q 011050 123 ALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVD 168 (494)
Q Consensus 123 a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~ 168 (494)
|++.++++++++|.+..+++.+|.++...|++++|+..|.++++..
T Consensus 84 A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 129 (234)
T TIGR02521 84 AEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP 129 (234)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999864
No 76
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.69 E-value=3.6e-08 Score=90.99 Aligned_cols=97 Identities=14% Similarity=0.111 Sum_probs=89.8
Q ss_pred hcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhccccchH
Q 011050 60 ESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMK 139 (494)
Q Consensus 60 ~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~ 139 (494)
.++.++++..|.++++.+|+++.+|.++|.+|..+|++ ++|+..++++++++|+++.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~-----------------------~~A~~a~~~Al~l~P~~~~ 108 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDY-----------------------DNALLAYRQALQLRGENAE 108 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH-----------------------HHHHHHHHHHHHhCCCCHH
Confidence 57778999999999999999999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHH-HHHHH--HHHHHHHHHccccCCCCCchhHHHHH
Q 011050 140 SHLLKANAL-ILLER--YDMARDAILSGLQVDPFSNPLQASLQ 179 (494)
Q Consensus 140 a~~~~g~~~-~~~~~--~~~A~~~~~~al~l~p~~~~~~~~~~ 179 (494)
.++.+|.++ ...|+ +++|...++++++++|++..+...+.
T Consensus 109 ~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA 151 (198)
T PRK10370 109 LYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLA 151 (198)
T ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHH
Confidence 999999986 67777 59999999999999999988766553
No 77
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.66 E-value=1.4e-08 Score=94.52 Aligned_cols=48 Identities=31% Similarity=0.891 Sum_probs=41.0
Q ss_pred CcccccccccccccCc--------EEcCCCCcccHhhHHHhccCCCCCCCCCcccc
Q 011050 200 TDDFDCTLCLKLLYEP--------ITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 247 (494)
Q Consensus 200 ~~~~~C~iC~~~~~~P--------v~~~cgh~fc~~Cl~~~~~~~~~CP~Cr~~~~ 247 (494)
..+..|+||++.+.++ +..+|||.||..||..|+.....||+||..+.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 4568999999987653 45689999999999999988889999999863
No 78
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.66 E-value=7.6e-08 Score=82.89 Aligned_cols=95 Identities=14% Similarity=0.040 Sum_probs=86.5
Q ss_pred HHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHH
Q 011050 68 SNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANA 147 (494)
Q Consensus 68 ~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~a~~~~g~~ 147 (494)
..|.+++..+|++..++..+|.+++..|++ .+|+..+++++.++|.+..+++.+|.+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~-----------------------~~A~~~~~~~~~~~p~~~~~~~~la~~ 60 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRY-----------------------DEALKLFQLLAAYDPYNSRYWLGLAAC 60 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccH-----------------------HHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 468899999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHhhh
Q 011050 148 LILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTT 185 (494)
Q Consensus 148 ~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~ 185 (494)
|..+|++++|+..|.++++++|++......+..+....
T Consensus 61 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 61 CQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc
Confidence 99999999999999999999999988766655444333
No 79
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.65 E-value=5.1e-08 Score=97.63 Aligned_cols=126 Identities=28% Similarity=0.258 Sum_probs=110.8
Q ss_pred hhhHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhH
Q 011050 41 WDRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHA 120 (494)
Q Consensus 41 ~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (494)
.+.+..++.++..|+..|-.+....||.+|.+++...|....+|.|||.++++.+.. .+.
T Consensus 368 ~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~--------------------~d~ 427 (758)
T KOG1310|consen 368 YELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWR--------------------GDS 427 (758)
T ss_pred hhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhcc--------------------ccH
Confidence 466778899999999999999999999999999999999999999999999887764 234
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHhhhh
Q 011050 121 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTA 186 (494)
Q Consensus 121 ~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~ 186 (494)
..|++|+..|+++||...+|||+++.++..++++.+|++....+....|.+.+......-+.+-+.
T Consensus 428 ~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a~~~~v~~l~rDi~ 493 (758)
T KOG1310|consen 428 YLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDVARQNFVLCLPRDIS 493 (758)
T ss_pred HHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhhhhhhhhccccchH
Confidence 789999999999999999999999999999999999999999999999977766665554444443
No 80
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.65 E-value=6.6e-08 Score=108.68 Aligned_cols=106 Identities=18% Similarity=0.176 Sum_probs=92.2
Q ss_pred HHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhcc
Q 011050 55 NRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQ 134 (494)
Q Consensus 55 ~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~ 134 (494)
......|++++|+..|.+|++++|+ +.+|.++|.++.++|++ ++|+..+++++.++
T Consensus 584 ~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~-----------------------deA~~~l~~AL~l~ 639 (987)
T PRK09782 584 AQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNV-----------------------PAAVSDLRAALELE 639 (987)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCH-----------------------HHHHHHHHHHHHhC
Confidence 3344559999999999999999996 88999999999999999 99999999999999
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHhh
Q 011050 135 SNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERT 184 (494)
Q Consensus 135 p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~ 184 (494)
|+++.++..+|.++...|++++|++.|.++++++|++..++..+..+...
T Consensus 640 Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~ 689 (987)
T PRK09782 640 PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQR 689 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998877665554433
No 81
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.65 E-value=3e-08 Score=73.93 Aligned_cols=64 Identities=17% Similarity=0.309 Sum_probs=60.1
Q ss_pred HHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHh
Q 011050 52 QKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLL 131 (494)
Q Consensus 52 ~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al 131 (494)
..|..++..|+|++|+..|.++++.+|+++.++..+|.++...|++ ++|+..+++++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~-----------------------~~A~~~~~~a~ 58 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRY-----------------------DEALAYYERAL 58 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-H-----------------------HHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCH-----------------------HHHHHHHHHHH
Confidence 5799999999999999999999999999999999999999999999 99999999999
Q ss_pred hccccch
Q 011050 132 NLQSNSM 138 (494)
Q Consensus 132 ~l~p~~~ 138 (494)
+++|+++
T Consensus 59 ~~~P~~p 65 (65)
T PF13432_consen 59 ELDPDNP 65 (65)
T ss_dssp HHSTT-H
T ss_pred HHCcCCC
Confidence 9999875
No 82
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.65 E-value=1.3e-07 Score=88.24 Aligned_cols=112 Identities=18% Similarity=0.205 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHH
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (494)
...+...|..++..|++++|+..|.++++..|.+..++.++|.++...|++ ++|+..
T Consensus 65 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~-----------------------~~A~~~ 121 (234)
T TIGR02521 65 YLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKY-----------------------EQAMQQ 121 (234)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccH-----------------------HHHHHH
Confidence 456677899999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhcc--ccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHH
Q 011050 127 AEKLLNLQ--SNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (494)
Q Consensus 127 ~~~al~l~--p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 181 (494)
+.++++.. +.....++.+|.++...|++++|...+.++++.+|++..+...+..+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 178 (234)
T TIGR02521 122 FEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAEL 178 (234)
T ss_pred HHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHH
Confidence 99998754 45667888899999999999999999999999999887655544433
No 83
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.64 E-value=1.7e-08 Score=67.75 Aligned_cols=38 Identities=50% Similarity=1.292 Sum_probs=34.6
Q ss_pred cccccccccCcE-EcCCCCcccHhhHHHhcc--CCCCCCCC
Q 011050 205 CTLCLKLLYEPI-TTPCGHSFCRSCLFQSMD--RGNKCPLC 242 (494)
Q Consensus 205 C~iC~~~~~~Pv-~~~cgh~fc~~Cl~~~~~--~~~~CP~C 242 (494)
|+||.+.+.+|+ .++|||+||..|+..++. ....||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 789999999999999998 45579987
No 84
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=6.2e-08 Score=94.65 Aligned_cols=106 Identities=21% Similarity=0.321 Sum_probs=99.3
Q ss_pred cCCCCCchhhHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCC
Q 011050 34 EGEGSLPWDRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNG 113 (494)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (494)
.+.-+...+....++..+.+|+.++++.+|.+|+..|+.|+++.|+++..|.|||.+++.+++|
T Consensus 36 ~~~~s~~~~~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~---------------- 99 (486)
T KOG0550|consen 36 SPEYSFSQEAAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRF---------------- 99 (486)
T ss_pred CccccccchHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhH----------------
Confidence 3445556677888999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 011050 114 LDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAIL 162 (494)
Q Consensus 114 ~~~~~~~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~ 162 (494)
++|+-++++.++++|...+++.+.++++..++...+|-..|+
T Consensus 100 -------~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~ 141 (486)
T KOG0550|consen 100 -------EEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLK 141 (486)
T ss_pred -------hhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHhh
Confidence 999999999999999999999999999999999999988877
No 85
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.63 E-value=1.6e-07 Score=85.47 Aligned_cols=113 Identities=17% Similarity=0.156 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHH
Q 011050 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (494)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (494)
....+..+|..|.+.|+.+.|-..|.+|+.++|++.+++.|.|.-+...|+| ++|..
T Consensus 68 ~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~-----------------------~eA~q 124 (250)
T COG3063 68 YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRP-----------------------EEAMQ 124 (250)
T ss_pred cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCCh-----------------------HHHHH
Confidence 3467888999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhcc--ccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHH
Q 011050 126 DAEKLLNLQ--SNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (494)
Q Consensus 126 ~~~~al~l~--p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 181 (494)
.+++|+..- +..+..+-++|.|-.+.|+++.|.++|+++|+++|+++.....+...
T Consensus 125 ~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~ 182 (250)
T COG3063 125 QFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARL 182 (250)
T ss_pred HHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHH
Confidence 999999842 34567899999999999999999999999999999999876655544
No 86
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=1.5e-08 Score=87.44 Aligned_cols=50 Identities=34% Similarity=0.953 Sum_probs=43.0
Q ss_pred CCCcccccccccccccCc--EEcCCCCcccHhhHHHhccCCCCCCCCCcccc
Q 011050 198 ERTDDFDCTLCLKLLYEP--ITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 247 (494)
Q Consensus 198 ~~~~~~~C~iC~~~~~~P--v~~~cgh~fc~~Cl~~~~~~~~~CP~Cr~~~~ 247 (494)
.....+.|+||++-+..- +.+.|||.||+.||...+.++..||+|+..+.
T Consensus 127 ~~~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt 178 (187)
T KOG0320|consen 127 RKEGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKIT 178 (187)
T ss_pred ccccccCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCcccccc
Confidence 345669999999988765 45799999999999999999999999998763
No 87
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.61 E-value=1.1e-07 Score=103.88 Aligned_cols=99 Identities=17% Similarity=0.112 Sum_probs=61.7
Q ss_pred HHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHH----HHHHHHH
Q 011050 54 GNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAEL----ALKDAEK 129 (494)
Q Consensus 54 g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----a~~~~~~ 129 (494)
|..++..|++++|+..|.++++.+|+++.++.++|.+|...|++ .+ |+..+++
T Consensus 219 ~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~-----------------------~eA~~~A~~~~~~ 275 (656)
T PRK15174 219 VDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRS-----------------------REAKLQAAEHWRH 275 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCc-----------------------hhhHHHHHHHHHH
Confidence 45556666777777777777777776666666667666666666 32 5555666
Q ss_pred HhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhH
Q 011050 130 LLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQ 175 (494)
Q Consensus 130 al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~ 175 (494)
+++++|+++.++..+|.++...|++++|+..++++++++|++..+.
T Consensus 276 Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~ 321 (656)
T PRK15174 276 ALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVR 321 (656)
T ss_pred HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 6666666555666666666666666666666666666666555443
No 88
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.59 E-value=1.1e-07 Score=83.51 Aligned_cols=108 Identities=22% Similarity=0.245 Sum_probs=85.1
Q ss_pred hHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhccccchHHHH
Q 011050 63 FEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHL 142 (494)
Q Consensus 63 ~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~a~~ 142 (494)
|+.|...|..+...+|.|+..+.+-|.++..+.++. +.. +....+++|+.-++.|+.++|+...|++
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk---~g~----------es~~miedAisK~eeAL~I~P~~hdAlw 73 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFK---QGP----------ESKKMIEDAISKFEEALKINPNKHDALW 73 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS----HH----------HHHHHHHHHHHHHHHHHHH-TT-HHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhcc---Ccc----------hHHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 678999999999999999999999999999998871 000 1112348899999999999999999999
Q ss_pred HHHHHHHHHHH-----------HHHHHHHHHccccCCCCCchhHHHHHHHHh
Q 011050 143 LKANALILLER-----------YDMARDAILSGLQVDPFSNPLQASLQNLER 183 (494)
Q Consensus 143 ~~g~~~~~~~~-----------~~~A~~~~~~al~l~p~~~~~~~~~~~~~~ 183 (494)
.+|++|..++. |++|.+.|.+|...+|+|...+..++...+
T Consensus 74 ~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~k 125 (186)
T PF06552_consen 74 CLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAK 125 (186)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHh
Confidence 99999987544 889999999999999999998888776544
No 89
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=98.57 E-value=1.9e-08 Score=87.65 Aligned_cols=119 Identities=21% Similarity=0.404 Sum_probs=89.2
Q ss_pred HHhhccccchHHHHHHHHH-HHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHhhhhhhhccccCCCCCCCccccccc
Q 011050 129 KLLNLQSNSMKSHLLKANA-LILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASLIGRRIHGTPERTDDFDCTL 207 (494)
Q Consensus 129 ~al~l~p~~~~a~~~~g~~-~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~i 207 (494)
.++...|+-.+-|-..|.+ |.....|-...++|..++++|.++.+ .+++...... ....-.|.|.|
T Consensus 135 ~viD~qpdVCKdyk~TGYCGYGDsCKflH~R~D~KtGWkLn~EWnA------~~Ee~~v~~~-------~~e~IPF~C~i 201 (259)
T COG5152 135 EVIDTQPDVCKDYKETGYCGYGDSCKFLHDRSDFKTGWKLNQEWNA------EYEEAPVISG-------PGEKIPFLCGI 201 (259)
T ss_pred ceeecCcccccchhhcccccCCchhhhhhhhhhhhcccccchhhcc------hhhhcccccC-------CCCCCceeehh
Confidence 3456678777888888887 67788999999999999999998873 2222221111 12234689999
Q ss_pred ccccccCcEEcCCCCcccHhhHHHhccCCCCCCCCCcccccCCCCCcccccHHHHH
Q 011050 208 CLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLFITPRTCAVSVTLNSII 263 (494)
Q Consensus 208 C~~~~~~Pv~~~cgh~fc~~Cl~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~l~~~~ 263 (494)
|..-+..||.+.|||.||..|.-.-...+..|-+|..... ..+.+...+..++
T Consensus 202 CKkdy~spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~---G~f~V~~d~~kmL 254 (259)
T COG5152 202 CKKDYESPVVTECGHSFCSLCAIRKYQKGDECGVCGKATY---GRFWVVSDLQKML 254 (259)
T ss_pred chhhccchhhhhcchhHHHHHHHHHhccCCcceecchhhc---cceeHHhhHHHHH
Confidence 9999999999999999999999988888999999998763 2344444444444
No 90
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=1.9e-07 Score=94.60 Aligned_cols=110 Identities=22% Similarity=0.211 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHhccC-------CCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHH
Q 011050 49 DLVQKGNRAFRESNFEEAISNYSRANNIK-------PGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAE 121 (494)
Q Consensus 49 ~~~~~g~~~~~~~~~~~Ai~~y~~al~~~-------p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (494)
-+.+.|..+|..+.|.+|+.+|..++..- +.....+.|+|-+|.+++.| .
T Consensus 416 v~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~-----------------------~ 472 (611)
T KOG1173|consen 416 VLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY-----------------------E 472 (611)
T ss_pred hhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH-----------------------H
Confidence 45678888999999999999999999432 22456789999999999999 9
Q ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHH
Q 011050 122 LALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (494)
Q Consensus 122 ~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 181 (494)
+|+..+++++.+.|.++.+|--.|.+|..+|+++.|+++|.++|.++|+|.-+...+...
T Consensus 473 eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 473 EAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998776666533
No 91
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.56 E-value=1.6e-07 Score=102.43 Aligned_cols=103 Identities=17% Similarity=0.119 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHhcChHH----HHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHH
Q 011050 48 FDLVQKGNRAFRESNFEE----AISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 123 (494)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~----Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 123 (494)
..+...|..++..|++++ |+..|.++++++|+++.++.++|.++...|++ ++|
T Consensus 247 ~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~-----------------------~eA 303 (656)
T PRK15174 247 ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQN-----------------------EKA 303 (656)
T ss_pred HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCH-----------------------HHH
Confidence 445567788888888875 78888888888888888888888888888888 888
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCch
Q 011050 124 LKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNP 173 (494)
Q Consensus 124 ~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~ 173 (494)
+..++++++++|+++.+++.+|.+|..+|++++|++.|.++++.+|++..
T Consensus 304 ~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~ 353 (656)
T PRK15174 304 IPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSK 353 (656)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchH
Confidence 88888888888888888888888888888888888888888888887654
No 92
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.56 E-value=6.4e-08 Score=94.60 Aligned_cols=119 Identities=15% Similarity=0.170 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHH
Q 011050 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (494)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (494)
...-+...|..+.+.|++++|+..|.+|++++|+++.+...++..++..|++ .++..
T Consensus 145 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~-----------------------~~~~~ 201 (280)
T PF13429_consen 145 SARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDY-----------------------DEARE 201 (280)
T ss_dssp -HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHH-----------------------HHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCh-----------------------HHHHH
Confidence 3456778899999999999999999999999999999999999999988998 77666
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHhhhhh
Q 011050 126 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTAS 187 (494)
Q Consensus 126 ~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~ 187 (494)
.+.......|+++..+..+|.+|..+|++++|+..|+++++.+|+|+.+...+..+-...+.
T Consensus 202 ~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~ 263 (280)
T PF13429_consen 202 ALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGR 263 (280)
T ss_dssp HHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----
T ss_pred HHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccc
Confidence 66666666677878888899999999999999999999999999999888777666544443
No 93
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.55 E-value=2e-07 Score=95.30 Aligned_cols=103 Identities=9% Similarity=-0.000 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHH
Q 011050 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDA 127 (494)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 127 (494)
..+...|..+++.|++++|+..|.++++.+|++..++..+|.+|.+.|++ ++|++.+
T Consensus 181 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-----------------------~~A~~~~ 237 (389)
T PRK11788 181 HFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDY-----------------------AAAIEAL 237 (389)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCH-----------------------HHHHHHH
Confidence 34567888888889999999999999988888888888888888888888 8888888
Q ss_pred HHHhhccccc-hHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCch
Q 011050 128 EKLLNLQSNS-MKSHLLKANALILLERYDMARDAILSGLQVDPFSNP 173 (494)
Q Consensus 128 ~~al~l~p~~-~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~ 173 (494)
+++++.+|.+ ..++..++.+|...|++++|+..++++++.+|++..
T Consensus 238 ~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~ 284 (389)
T PRK11788 238 ERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADL 284 (389)
T ss_pred HHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH
Confidence 8888887766 356677788888888888888888888888886643
No 94
>PLN02789 farnesyltranstransferase
Probab=98.53 E-value=4.1e-07 Score=89.98 Aligned_cols=56 Identities=13% Similarity=0.086 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHH-HHHHHHHHHHccccCCCCCchhHH
Q 011050 121 ELALKDAEKLLNLQSNSMKSHLLKANALILLE-RYDMARDAILSGLQVDPFSNPLQA 176 (494)
Q Consensus 121 ~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~-~~~~A~~~~~~al~l~p~~~~~~~ 176 (494)
.+|+..+.++|+++|++..+|..+|.++..+| +++++++.+.++++.+|.+..++.
T Consensus 54 erAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~ 110 (320)
T PLN02789 54 PRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWH 110 (320)
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhH
Confidence 56666666666666666666666666666665 456666666666666666655544
No 95
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.53 E-value=5.9e-07 Score=76.66 Aligned_cols=109 Identities=16% Similarity=0.162 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCc---ccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHH
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP---IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 123 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 123 (494)
...+...|...++.|+|.+|+..+......-|... .+...++-+|++.++| .+|
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y-----------------------~~A 66 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDY-----------------------EEA 66 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCH-----------------------HHH
Confidence 57888999999999999999999999998877654 7778899999999999 999
Q ss_pred HHHHHHHhhccccchH---HHHHHHHHHHHHHH---------------HHHHHHHHHccccCCCCCchhHHHH
Q 011050 124 LKDAEKLLNLQSNSMK---SHLLKANALILLER---------------YDMARDAILSGLQVDPFSNPLQASL 178 (494)
Q Consensus 124 ~~~~~~al~l~p~~~~---a~~~~g~~~~~~~~---------------~~~A~~~~~~al~l~p~~~~~~~~~ 178 (494)
+..+++.++++|++++ ++|.+|.+++.+.. ..+|..+|+..++.-|++.-+..+.
T Consensus 67 ~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~dA~ 139 (142)
T PF13512_consen 67 IAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAADAR 139 (142)
T ss_pred HHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHHHH
Confidence 9999999999998765 89999999988876 7778888888888888776655443
No 96
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.52 E-value=3.5e-07 Score=99.11 Aligned_cols=116 Identities=16% Similarity=0.002 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHH
Q 011050 44 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 123 (494)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 123 (494)
+..+......|..+.+.+++++|+..+.+++..+|+++.+++.+|.++.++|+| ++|
T Consensus 117 Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~-----------------------~~A 173 (694)
T PRK15179 117 PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQS-----------------------EQA 173 (694)
T ss_pred CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcch-----------------------HHH
Confidence 335677888999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCc-hhHHHHHHHH
Q 011050 124 LKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSN-PLQASLQNLE 182 (494)
Q Consensus 124 ~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~-~~~~~~~~~~ 182 (494)
+..|++++..+|+++.++..+|.++..+|+.++|...|++|++...+-. ...+.+.+++
T Consensus 174 ~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 233 (694)
T PRK15179 174 DACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLVDLN 233 (694)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998866533 3233344443
No 97
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.52 E-value=7.3e-07 Score=84.64 Aligned_cols=103 Identities=16% Similarity=0.127 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcc---cccChhHHHHHH--------HhhhccCCCCCccccccCCCCC
Q 011050 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPI---VLGNRSSAYIRI--------SQFLKHRPPSASEYRPLNGLDP 116 (494)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~---~~~~~a~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 116 (494)
..+...|..++..|++++|+..|.++++..|+++. +++++|.+++.. +++
T Consensus 71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~------------------- 131 (235)
T TIGR03302 71 QAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAA------------------- 131 (235)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHH-------------------
Confidence 46788899999999999999999999999999887 688899999876 667
Q ss_pred chhHHHHHHHHHHHhhccccchHHH-----------------HHHHHHHHHHHHHHHHHHHHHccccCCCCCch
Q 011050 117 TTHAELALKDAEKLLNLQSNSMKSH-----------------LLKANALILLERYDMARDAILSGLQVDPFSNP 173 (494)
Q Consensus 117 ~~~~~~a~~~~~~al~l~p~~~~a~-----------------~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~ 173 (494)
.+|++.+++++..+|++..++ +.+|..|...|++.+|+..|.++++..|+.+.
T Consensus 132 ----~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 201 (235)
T TIGR03302 132 ----REAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPA 201 (235)
T ss_pred ----HHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcc
Confidence 999999999999999886542 46688889999999999999999999887653
No 98
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.51 E-value=3.3e-07 Score=69.88 Aligned_cols=69 Identities=26% Similarity=0.468 Sum_probs=64.4
Q ss_pred HHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhc
Q 011050 54 GNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNL 133 (494)
Q Consensus 54 g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l 133 (494)
+..+++.++|++|+..+++++.++|.++.++..+|.+++.+|+| .+|+.+++++++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~-----------------------~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRY-----------------------EEALEDLERALEL 58 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccH-----------------------HHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999 9999999999999
Q ss_pred cccchHHHHHHH
Q 011050 134 QSNSMKSHLLKA 145 (494)
Q Consensus 134 ~p~~~~a~~~~g 145 (494)
+|+...+...++
T Consensus 59 ~p~~~~~~~~~a 70 (73)
T PF13371_consen 59 SPDDPDARALRA 70 (73)
T ss_pred CCCcHHHHHHHH
Confidence 999988776554
No 99
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.49 E-value=3.4e-07 Score=95.83 Aligned_cols=104 Identities=14% Similarity=0.091 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHH-
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK- 125 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~- 125 (494)
+..+...|..+..+|.+.+|...|..|+.++|+++.....+|.++...|+- ..|..
T Consensus 684 ~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~-----------------------~la~~~ 740 (799)
T KOG4162|consen 684 ASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSP-----------------------RLAEKR 740 (799)
T ss_pred HHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCc-----------------------chHHHH
Confidence 455688899999999999999999999999999999999999999999976 45555
Q ss_pred -HHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCch
Q 011050 126 -DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNP 173 (494)
Q Consensus 126 -~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~ 173 (494)
....++++||.+++|||.+|.++...|+.++|.+.|..|+++++.++-
T Consensus 741 ~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 741 SLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 889999999999999999999999999999999999999999888763
No 100
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.49 E-value=5.6e-08 Score=65.11 Aligned_cols=30 Identities=37% Similarity=1.113 Sum_probs=21.1
Q ss_pred cccccccccC----cEEcCCCCcccHhhHHHhccC
Q 011050 205 CTLCLKLLYE----PITTPCGHSFCRSCLFQSMDR 235 (494)
Q Consensus 205 C~iC~~~~~~----Pv~~~cgh~fc~~Cl~~~~~~ 235 (494)
|+||.+ +.+ |+.++|||+||+.||.+....
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~ 34 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKK 34 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhc
Confidence 899999 888 999999999999999998774
No 101
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.48 E-value=9.3e-08 Score=65.26 Aligned_cols=42 Identities=45% Similarity=1.129 Sum_probs=36.5
Q ss_pred ccccccccccCcEEcC-CCCcccHhhHHHhccC-CCCCCCCCcc
Q 011050 204 DCTLCLKLLYEPITTP-CGHSFCRSCLFQSMDR-GNKCPLCRAV 245 (494)
Q Consensus 204 ~C~iC~~~~~~Pv~~~-cgh~fc~~Cl~~~~~~-~~~CP~Cr~~ 245 (494)
.|++|.+.+.+++.++ |||.||..|+..|+.. ...||.|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 4899999998887765 9999999999999886 6679999875
No 102
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.48 E-value=2.4e-07 Score=70.66 Aligned_cols=71 Identities=25% Similarity=0.354 Sum_probs=64.7
Q ss_pred hHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccC
Q 011050 88 SSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQV 167 (494)
Q Consensus 88 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 167 (494)
+.+|+..++| .+|++.+++++.++|+++.+++.+|.+|..+|++.+|+.+|+++++.
T Consensus 2 ~~~~~~~~~~-----------------------~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 2 KQIYLQQEDY-----------------------EEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHHhCCCH-----------------------HHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4678888899 99999999999999999999999999999999999999999999999
Q ss_pred CCCCchhHHHHHHH
Q 011050 168 DPFSNPLQASLQNL 181 (494)
Q Consensus 168 ~p~~~~~~~~~~~~ 181 (494)
+|++..+......+
T Consensus 59 ~p~~~~~~~~~a~l 72 (73)
T PF13371_consen 59 SPDDPDARALRAML 72 (73)
T ss_pred CCCcHHHHHHHHhc
Confidence 99998876655543
No 103
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.47 E-value=4.3e-07 Score=101.11 Aligned_cols=111 Identities=12% Similarity=0.061 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHH
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (494)
+..+...|..+...|++++|+..|.++++++|.++.++.++|.++...|++ .+|+..
T Consensus 49 a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~-----------------------~eA~~~ 105 (765)
T PRK10049 49 ARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQY-----------------------DEALVK 105 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH-----------------------HHHHHH
Confidence 455788899999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHH
Q 011050 127 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (494)
Q Consensus 127 ~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 181 (494)
+++++..+|++.. ++.+|.++...|++++|+..|+++++++|++..+...+..+
T Consensus 106 l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~ 159 (765)
T PRK10049 106 AKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQA 159 (765)
T ss_pred HHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999999 99999999999999999999999999999999876655443
No 104
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.46 E-value=1.2e-07 Score=64.48 Aligned_cols=41 Identities=39% Similarity=1.028 Sum_probs=34.3
Q ss_pred ccccccccc---cCcEEcCCCCcccHhhHHHhccCCCCCCCCCc
Q 011050 204 DCTLCLKLL---YEPITTPCGHSFCRSCLFQSMDRGNKCPLCRA 244 (494)
Q Consensus 204 ~C~iC~~~~---~~Pv~~~cgh~fc~~Cl~~~~~~~~~CP~Cr~ 244 (494)
.|++|.+.+ ..|+.++|||+||..|+.........||.||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 488999988 34577899999999999998755668999984
No 105
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.44 E-value=5.2e-07 Score=104.97 Aligned_cols=126 Identities=19% Similarity=0.211 Sum_probs=98.5
Q ss_pred HHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCc--------------
Q 011050 52 QKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPT-------------- 117 (494)
Q Consensus 52 ~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 117 (494)
.+|..++..|++++|+..|.++++.+|+++.++..+|.+|...|++-++. ..++....++|.
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~----~~l~~Al~~~p~~~~~~~~~~ll~~~ 349 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAV----AQFEKALALDPHSSNRDKWESLLKVN 349 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH----HHHHHHHHhCCCccchhHHHHHHHhh
Confidence 45788888888888888888888888888888888888888877763222 222222222221
Q ss_pred ---------------hhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHH
Q 011050 118 ---------------THAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (494)
Q Consensus 118 ---------------~~~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 181 (494)
...++|+..++++++++|++..+++.+|.+|...|++++|++.|+++++++|++..+...+..+
T Consensus 350 ~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l 428 (1157)
T PRK11447 350 RYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANL 428 (1157)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 2237899999999999999999999999999999999999999999999999998776555443
No 106
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.43 E-value=2.4e-07 Score=69.57 Aligned_cols=67 Identities=21% Similarity=0.318 Sum_probs=61.4
Q ss_pred HHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhcccc
Q 011050 57 AFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSN 136 (494)
Q Consensus 57 ~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~ 136 (494)
++..|+|++|+..|.+++..+|++..++..+|.+|++.|++ ++|...+.+++..+|+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~-----------------------~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQY-----------------------DEAEELLERLLKQDPD 57 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-H-----------------------HHHHHHHHCCHGGGTT
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCH-----------------------HHHHHHHHHHHHHCcC
Confidence 46789999999999999999999999999999999999999 9999999999999999
Q ss_pred chHHHHHHHH
Q 011050 137 SMKSHLLKAN 146 (494)
Q Consensus 137 ~~~a~~~~g~ 146 (494)
++..+..++.
T Consensus 58 ~~~~~~l~a~ 67 (68)
T PF14559_consen 58 NPEYQQLLAQ 67 (68)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 8777766664
No 107
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.42 E-value=9e-07 Score=99.64 Aligned_cols=112 Identities=18% Similarity=0.179 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHH
Q 011050 44 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 123 (494)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 123 (494)
...+..+...|..++..|+|++|+..|.++++.+|++..++..+|.++...|++ ++|
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~-----------------------~~A 178 (899)
T TIGR02917 122 EGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRF-----------------------DEA 178 (899)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCH-----------------------HHH
Confidence 344677888999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHH
Q 011050 124 LKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASL 178 (494)
Q Consensus 124 ~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~ 178 (494)
+..+++++..+|.+..+++.+|.++...|++++|+..|++++.++|++..+...+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~ 233 (899)
T TIGR02917 179 RALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLAL 233 (899)
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999887654433
No 108
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=9e-08 Score=88.06 Aligned_cols=48 Identities=46% Similarity=0.978 Sum_probs=41.6
Q ss_pred CcccccccccccccCcEEcCCCCcccHhhHHH-hccCCC-CCCCCCcccc
Q 011050 200 TDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQ-SMDRGN-KCPLCRAVLF 247 (494)
Q Consensus 200 ~~~~~C~iC~~~~~~Pv~~~cgh~fc~~Cl~~-~~~~~~-~CP~Cr~~~~ 247 (494)
..++.|.+|++....|..++|||.||+.||.. |..... .||+||+...
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~ 262 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVY 262 (271)
T ss_pred ccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhcc
Confidence 35899999999999999999999999999999 554444 5999999764
No 109
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.40 E-value=2.3e-06 Score=91.23 Aligned_cols=127 Identities=16% Similarity=0.148 Sum_probs=94.5
Q ss_pred hHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCC-------CCCccccccCCCC
Q 011050 43 RYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRP-------PSASEYRPLNGLD 115 (494)
Q Consensus 43 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 115 (494)
....+..+...||.+|.+|++++|...+.++|..+|.++.+|+.+|.+|-+.|+..|..+ ...+.+--|+..-
T Consensus 135 l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~la 214 (895)
T KOG2076|consen 135 LAPELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLA 214 (895)
T ss_pred cCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 344578899999999999999999999999999999999999999999999988622111 1111111121111
Q ss_pred ----CchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCC
Q 011050 116 ----PTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDP 169 (494)
Q Consensus 116 ----~~~~~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p 169 (494)
.++....|.--|.+||+++|.+.+.++.++..|..+|++..|++.|.+.++++|
T Consensus 215 dls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 215 DLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 223346677777788888888878888888888788888888888888888777
No 110
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.39 E-value=1e-06 Score=98.19 Aligned_cols=111 Identities=11% Similarity=-0.024 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHH
Q 011050 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDA 127 (494)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 127 (494)
..+...|..+...|++++|+..+.+++...|.+..++.++|.++...|++ .+|+..+
T Consensus 360 ~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~-----------------------~~A~~~l 416 (765)
T PRK10049 360 QGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWP-----------------------RAAENEL 416 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH-----------------------HHHHHHH
Confidence 45567888999999999999999999999999999999999999999999 9999999
Q ss_pred HHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHH
Q 011050 128 EKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (494)
Q Consensus 128 ~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 181 (494)
++++.++|++...++.+|.++..++++++|...++++++.+|+++.+...-...
T Consensus 417 ~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 417 KKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLARAR 470 (765)
T ss_pred HHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999876554443
No 111
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.38 E-value=7.4e-07 Score=66.86 Aligned_cols=60 Identities=25% Similarity=0.277 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHH
Q 011050 121 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQN 180 (494)
Q Consensus 121 ~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~ 180 (494)
++|+..++++++.+|++..+++.+|.+|...|++++|...+.+++..+|+++.++..+.+
T Consensus 8 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 8 DEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999998877766654
No 112
>PHA02926 zinc finger-like protein; Provisional
Probab=98.37 E-value=1.6e-07 Score=84.37 Aligned_cols=47 Identities=26% Similarity=0.854 Sum_probs=37.6
Q ss_pred CcccccccccccccC---------cEEcCCCCcccHhhHHHhccCC------CCCCCCCccc
Q 011050 200 TDDFDCTLCLKLLYE---------PITTPCGHSFCRSCLFQSMDRG------NKCPLCRAVL 246 (494)
Q Consensus 200 ~~~~~C~iC~~~~~~---------Pv~~~cgh~fc~~Cl~~~~~~~------~~CP~Cr~~~ 246 (494)
+.+..|+||++...+ ++..+|+|+||..||..|.... ..||+||..+
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f 229 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRF 229 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCccee
Confidence 356889999997644 2456999999999999998642 3599999976
No 113
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.37 E-value=4.6e-07 Score=89.32 Aligned_cols=113 Identities=23% Similarity=0.201 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHH
Q 011050 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (494)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (494)
++.++..+||..|..|++++|...|.+|+.-+.....+++|.|..+-.+|++ ++|++
T Consensus 489 n~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~l-----------------------deald 545 (840)
T KOG2003|consen 489 NAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNL-----------------------DEALD 545 (840)
T ss_pred CHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCH-----------------------HHHHH
Confidence 3678889999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHH
Q 011050 126 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (494)
Q Consensus 126 ~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 181 (494)
-+-+.-.+--++++.++.++.+|..+.+..+|+++|.++..+-|+++.+..-+..+
T Consensus 546 ~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dl 601 (840)
T KOG2003|consen 546 CFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADL 601 (840)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHH
Confidence 99998888788999999999999999999999999999999999999876655554
No 114
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=5.2e-07 Score=88.21 Aligned_cols=142 Identities=20% Similarity=0.179 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCC---------ccccccCC-
Q 011050 44 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSA---------SEYRPLNG- 113 (494)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~---------~~~~~~~~- 113 (494)
.+....+..+|+.+...|+.++|+-+|..|..+.|.+...|.++--+|...+++.++.--+. ..--.+++
T Consensus 331 ~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~ 410 (564)
T KOG1174|consen 331 PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGT 410 (564)
T ss_pred cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcc
Confidence 44567899999999999999999999999999999999999999999988777644332111 11111232
Q ss_pred ----CCCchhHHHHHHHHHHHhhccccchHH---------------------------------HHHHHHHHHHHHHHHH
Q 011050 114 ----LDPTTHAELALKDAEKLLNLQSNSMKS---------------------------------HLLKANALILLERYDM 156 (494)
Q Consensus 114 ----~~~~~~~~~a~~~~~~al~l~p~~~~a---------------------------------~~~~g~~~~~~~~~~~ 156 (494)
.||.+. ++|-+.+++++.++|.+..| |..+|.++.....+.+
T Consensus 411 ~V~~~dp~~r-EKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~ 489 (564)
T KOG1174|consen 411 LVLFPDPRMR-EKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQK 489 (564)
T ss_pred eeeccCchhH-HHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHH
Confidence 222221 67888899999999987765 5667777777888999
Q ss_pred HHHHHHccccCCCCCchhHHHHHHHHhhhh
Q 011050 157 ARDAILSGLQVDPFSNPLQASLQNLERTTA 186 (494)
Q Consensus 157 A~~~~~~al~l~p~~~~~~~~~~~~~~~~~ 186 (494)
|+++|.+||++||.+....+.++.+++...
T Consensus 490 am~~y~~ALr~dP~~~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 490 AMEYYYKALRQDPKSKRTLRGLRLLEKSDD 519 (564)
T ss_pred HHHHHHHHHhcCccchHHHHHHHHHHhccC
Confidence 999999999999999999999999988776
No 115
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.37 E-value=1.5e-06 Score=91.60 Aligned_cols=127 Identities=14% Similarity=0.134 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHHhcC---hHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCC----CCCcccccc-----CC
Q 011050 46 HVFDLVQKGNRAFRESN---FEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRP----PSASEYRPL-----NG 113 (494)
Q Consensus 46 ~~~~~~~~g~~~~~~~~---~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~~-----~~ 113 (494)
.+..++.+|..++..++ +.+|+.+|.+|++++|+++.+|..+|.+|.....|.-..+ .+....... ..
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~ 417 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELN 417 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCc
Confidence 46788899999887655 8899999999999999999999999998877655511000 000000011 11
Q ss_pred CCC------------chhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCch
Q 011050 114 LDP------------TTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNP 173 (494)
Q Consensus 114 ~~~------------~~~~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~ 173 (494)
.++ +...++|...+++|+.++| +..+|..+|.++...|++++|++.|.+|++++|.++.
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 111 2233788889999999999 4789999999999999999999999999999998774
No 116
>PRK11906 transcriptional regulator; Provisional
Probab=98.37 E-value=2.6e-06 Score=85.86 Aligned_cols=118 Identities=9% Similarity=-0.037 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHhcCh---HHHHHHHHHHh---ccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHH
Q 011050 49 DLVQKGNRAFRESNF---EEAISNYSRAN---NIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAEL 122 (494)
Q Consensus 49 ~~~~~g~~~~~~~~~---~~Ai~~y~~al---~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (494)
++..+|...+.++.- +.|+..+.+|+ .++|..+.+|..+|.|++..... -| .++...+.+
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~------------g~--~~~~~~~~~ 322 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALH------------GK--SELELAAQK 322 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHh------------cC--CCchHHHHH
Confidence 667788888766544 47899999999 99999999999999999876543 11 225666689
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHH
Q 011050 123 ALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQN 180 (494)
Q Consensus 123 a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~ 180 (494)
|.+.+++|+++||.++.|++.+|.++...++++.|...|++|+.++|+.+.++-...-
T Consensus 323 a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~ 380 (458)
T PRK11906 323 ALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRAL 380 (458)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999987665544
No 117
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=3.2e-07 Score=92.06 Aligned_cols=53 Identities=32% Similarity=0.862 Sum_probs=44.2
Q ss_pred ccccccccccccCcEEcCCCCcccHhhHHHhccCC-----CCCCCCCcccccCCCCCccc
Q 011050 202 DFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRG-----NKCPLCRAVLFITPRTCAVS 256 (494)
Q Consensus 202 ~~~C~iC~~~~~~Pv~~~cgh~fc~~Cl~~~~~~~-----~~CP~Cr~~~~~~~~~~~~~ 256 (494)
+..||||++...-|+.+.|||.||..||...|..+ ..||+|+..+.+ +++.+-
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~--kdl~pv 243 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL--KDLLPV 243 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc--cceeee
Confidence 78899999999999999999999999999987644 469999998753 444443
No 118
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=98.31 E-value=2.4e-07 Score=88.00 Aligned_cols=74 Identities=30% Similarity=0.592 Sum_probs=64.1
Q ss_pred CCCcccccccccccccCcEEc-CCCCcccHhhHHHhccCCCCCCCCCcccccCC--CCCcccccHHHHHHHhChHHH
Q 011050 198 ERTDDFDCTLCLKLLYEPITT-PCGHSFCRSCLFQSMDRGNKCPLCRAVLFITP--RTCAVSVTLNSIIQKNFPEEY 271 (494)
Q Consensus 198 ~~~~~~~C~iC~~~~~~Pv~~-~cgh~fc~~Cl~~~~~~~~~CP~Cr~~~~~~~--~~~~~~~~l~~~~~~~~p~~~ 271 (494)
....+.+|.+|..+|.++.++ .|=||||++||..++.....||.|...+.... .++..+..|++++.+++|.-+
T Consensus 11 ~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKLVPgl~ 87 (331)
T KOG2660|consen 11 ELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKLVPGLQ 87 (331)
T ss_pred hcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccCccccccCCcchHHHHHHHHHcchHH
Confidence 345788999999999999875 89999999999999998889999999875432 467788999999999999865
No 119
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.31 E-value=2.7e-06 Score=87.00 Aligned_cols=108 Identities=18% Similarity=0.137 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHH
Q 011050 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDA 127 (494)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 127 (494)
..+...|..++..|+|++|+..|.++++.+|.+..++..++.++.+.|++ ++|++.+
T Consensus 108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~-----------------------~~A~~~~ 164 (389)
T PRK11788 108 LALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDW-----------------------QKAIDVA 164 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchH-----------------------HHHHHHH
Confidence 45666788888888888888888888888888888888888888888888 7777777
Q ss_pred HHHhhccccch-----HHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHH
Q 011050 128 EKLLNLQSNSM-----KSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASL 178 (494)
Q Consensus 128 ~~al~l~p~~~-----~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~ 178 (494)
+++++.+|.+. ..+..+|.++...|++++|+..|.++++++|++..+...+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 220 (389)
T PRK11788 165 ERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILL 220 (389)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHH
Confidence 77777766542 2345667777777888888888888877777766544443
No 120
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.30 E-value=2.8e-06 Score=85.25 Aligned_cols=120 Identities=17% Similarity=0.102 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHH
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (494)
....+..+...+..|++++|...++..+...|+|+.++..++.+++..++. .+|.+.
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~-----------------------~~A~e~ 362 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKA-----------------------KEAIER 362 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh-----------------------HHHHHH
Confidence 345667788889999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHhhhhhhh
Q 011050 127 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASLI 189 (494)
Q Consensus 127 ~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~ 189 (494)
+++++.++|+.+-..+.+|++|...|++.+|+..++..+.-+|+++..|..+.+....+.+..
T Consensus 363 ~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~ 425 (484)
T COG4783 363 LKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRA 425 (484)
T ss_pred HHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchH
Confidence 999999999998889999999999999999999999999999999998888776655554433
No 121
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.30 E-value=1.4e-06 Score=87.71 Aligned_cols=71 Identities=14% Similarity=0.089 Sum_probs=65.3
Q ss_pred hhhHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCccc---ccChhHHHHHHHhhhccCCCCCccccccCCCCCc
Q 011050 41 WDRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIV---LGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPT 117 (494)
Q Consensus 41 ~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (494)
...+..+..+.+.|..++..|+|++|+..|++|++++|++..+ |+|+|.+|..+|++
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~-------------------- 128 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEG-------------------- 128 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCH--------------------
Confidence 3556678999999999999999999999999999999999855 99999999999999
Q ss_pred hhHHHHHHHHHHHhhcc
Q 011050 118 THAELALKDAEKLLNLQ 134 (494)
Q Consensus 118 ~~~~~a~~~~~~al~l~ 134 (494)
++|+..+++|+++.
T Consensus 129 ---dEAla~LrrALels 142 (453)
T PLN03098 129 ---KKAADCLRTALRDY 142 (453)
T ss_pred ---HHHHHHHHHHHHhc
Confidence 99999999999983
No 122
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.29 E-value=4.6e-06 Score=77.39 Aligned_cols=113 Identities=19% Similarity=0.187 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCc---ccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHH
Q 011050 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP---IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAEL 122 (494)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (494)
.+..+...|..++..|+|.+|+..|++.+...|... .+...+|.++++.++| .+
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y-----------------------~~ 60 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDY-----------------------EE 60 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-H-----------------------HH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCH-----------------------HH
Confidence 467899999999999999999999999999988764 7888999999999999 99
Q ss_pred HHHHHHHHhhccccch---HHHHHHHHHHHHHH-----------HHHHHHHHHHccccCCCCCchhHHHHHHH
Q 011050 123 ALKDAEKLLNLQSNSM---KSHLLKANALILLE-----------RYDMARDAILSGLQVDPFSNPLQASLQNL 181 (494)
Q Consensus 123 a~~~~~~al~l~p~~~---~a~~~~g~~~~~~~-----------~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 181 (494)
|+..++..++..|+++ .++|.+|.+++.+. ...+|+..|+..++..|++.-+..+...+
T Consensus 61 A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l 133 (203)
T PF13525_consen 61 AIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRL 133 (203)
T ss_dssp HHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHH
Confidence 9999999999998765 58999999976654 34589999999999999988666554443
No 123
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.28 E-value=2e-06 Score=100.12 Aligned_cols=101 Identities=15% Similarity=0.061 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHH
Q 011050 49 DLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAE 128 (494)
Q Consensus 49 ~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 128 (494)
.+...|..+.+.|++++|+..|.++++.+|+++.++.++|.+|...|++ ++|+..++
T Consensus 605 ~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~-----------------------~eA~~~l~ 661 (1157)
T PRK11447 605 IDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDL-----------------------AAARAQLA 661 (1157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH-----------------------HHHHHHHH
Confidence 4556788888899999999999999999999999999999999999999 99999999
Q ss_pred HHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCc
Q 011050 129 KLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSN 172 (494)
Q Consensus 129 ~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~ 172 (494)
++++.+|+++.++..+|.++..+|++++|++.|++++...|+++
T Consensus 662 ~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~ 705 (1157)
T PRK11447 662 KLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQP 705 (1157)
T ss_pred HHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCC
Confidence 99999999999999999999999999999999999988877654
No 124
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.27 E-value=6.5e-07 Score=89.99 Aligned_cols=69 Identities=19% Similarity=0.060 Sum_probs=66.3
Q ss_pred cCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhccccchHH---HHHHHHHHHHHH
Q 011050 76 IKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKS---HLLKANALILLE 152 (494)
Q Consensus 76 ~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~a---~~~~g~~~~~~~ 152 (494)
.+|+++.+|.|+|.+|+.+|+| ++|+..+++|++++|++..+ ||++|.+|..+|
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGry-----------------------eEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LG 126 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRV-----------------------KDALAQFETALELNPNPDEAQAAYYNKACCHAYRE 126 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCH-----------------------HHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcC
Confidence 5888999999999999999999 99999999999999999865 999999999999
Q ss_pred HHHHHHHHHHccccC
Q 011050 153 RYDMARDAILSGLQV 167 (494)
Q Consensus 153 ~~~~A~~~~~~al~l 167 (494)
++++|+++|++|+++
T Consensus 127 r~dEAla~LrrALel 141 (453)
T PLN03098 127 EGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999999997
No 125
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.26 E-value=3.5e-06 Score=84.54 Aligned_cols=118 Identities=17% Similarity=0.121 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHH
Q 011050 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 124 (494)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 124 (494)
++..-+...+..+++.++..+|++.+.+++.++|+.+.+..++|.+|++.|++ .+|+
T Consensus 338 ~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~-----------------------~eai 394 (484)
T COG4783 338 DNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKP-----------------------QEAI 394 (484)
T ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCCh-----------------------HHHH
Confidence 34455667899999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHhhh
Q 011050 125 KDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTT 185 (494)
Q Consensus 125 ~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~ 185 (494)
..++..+.-+|+++..|..+|.+|..+|+-.+|...+-+++.+......+...+....+.+
T Consensus 395 ~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 395 RILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred HHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999988888777766665554
No 126
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.25 E-value=7e-07 Score=58.65 Aligned_cols=38 Identities=47% Similarity=1.315 Sum_probs=33.8
Q ss_pred cccccccccCcEEcCCCCcccHhhHHHhcc-CCCCCCCC
Q 011050 205 CTLCLKLLYEPITTPCGHSFCRSCLFQSMD-RGNKCPLC 242 (494)
Q Consensus 205 C~iC~~~~~~Pv~~~cgh~fc~~Cl~~~~~-~~~~CP~C 242 (494)
|++|++....++.++|||.||..|+..|+. ....||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 789999989999999999999999999987 44569987
No 127
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.25 E-value=3.3e-06 Score=73.90 Aligned_cols=95 Identities=18% Similarity=0.254 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCC---cccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHH
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD---PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 123 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 123 (494)
....+..|..++..|+|++|+..|.+++...|+. ..+..++|.+++..|+| ++|
T Consensus 48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~-----------------------d~A 104 (145)
T PF09976_consen 48 ALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY-----------------------DEA 104 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH-----------------------HHH
Confidence 5667789999999999999999999999987654 36778889999999999 999
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccc
Q 011050 124 LKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGL 165 (494)
Q Consensus 124 ~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al 165 (494)
+..++.. .-.+-.+.++..+|.+|...|++++|+..|++||
T Consensus 105 l~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 105 LATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 9988663 3344556788889999999999999999999875
No 128
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.24 E-value=2.7e-06 Score=85.93 Aligned_cols=84 Identities=14% Similarity=0.183 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHH
Q 011050 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (494)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (494)
.+..+..+|..++..|+|++|+..+.+|+.++|+++.+|+++|.+|+.+|+| .+|+.
T Consensus 35 ~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~-----------------------~eA~~ 91 (356)
T PLN03088 35 NAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY-----------------------QTAKA 91 (356)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH-----------------------HHHHH
Confidence 3567889999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHH
Q 011050 126 DAEKLLNLQSNSMKSHLLKANALILLE 152 (494)
Q Consensus 126 ~~~~al~l~p~~~~a~~~~g~~~~~~~ 152 (494)
.+++++.++|++..++.+++.+...+.
T Consensus 92 ~~~~al~l~P~~~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 92 ALEKGASLAPGDSRFTKLIKECDEKIA 118 (356)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999888875553
No 129
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.22 E-value=5.6e-06 Score=77.93 Aligned_cols=112 Identities=13% Similarity=0.066 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCC---cccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHH
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD---PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 123 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 123 (494)
+..+.+.|..+++.|+|..|...|..-++.-|++ +.+++.+|.+++.+|+| ..|
T Consensus 141 ~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y-----------------------~~A 197 (262)
T COG1729 141 ATKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDY-----------------------EDA 197 (262)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccc-----------------------hHH
Confidence 3558899999999999999999999999998886 48999999999999999 999
Q ss_pred HHHHHHHhhccccc---hHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHH
Q 011050 124 LKDAEKLLNLQSNS---MKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (494)
Q Consensus 124 ~~~~~~al~l~p~~---~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 181 (494)
...+..+++-.|++ +++++.+|.++..+|+-++|...|.++++..|+...+..+...+
T Consensus 198 a~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~~ 258 (262)
T COG1729 198 AYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVAL 258 (262)
T ss_pred HHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 99999998877655 56799999999999999999999999999999999887766555
No 130
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.22 E-value=1.2e-06 Score=78.90 Aligned_cols=106 Identities=24% Similarity=0.230 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHH
Q 011050 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 124 (494)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 124 (494)
..|.-++++|+-|=.-|-..-|...|++++.+.|+-+.++.-+|.-+...|+| +.|.
T Consensus 63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~f-----------------------daa~ 119 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNF-----------------------DAAY 119 (297)
T ss_pred HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccc-----------------------hHHH
Confidence 34677888888888888888999999999999999999999999999999999 9999
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCch
Q 011050 125 KDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNP 173 (494)
Q Consensus 125 ~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~ 173 (494)
+.++-.+++||.+-.|+.++|.+++-.|+|.-|.+++.+-.+-||+++-
T Consensus 120 eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPf 168 (297)
T COG4785 120 EAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPF 168 (297)
T ss_pred HHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChH
Confidence 9999999999999999999999999999999999999999999999884
No 131
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=6.8e-07 Score=88.97 Aligned_cols=64 Identities=34% Similarity=0.868 Sum_probs=53.0
Q ss_pred CCcccccccccccccCcEEcCCCCcccHhhHHHhccCCCCCCCCCcccccCCCCCcccccHHHHHHHh
Q 011050 199 RTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLFITPRTCAVSVTLNSIIQKN 266 (494)
Q Consensus 199 ~~~~~~C~iC~~~~~~Pv~~~cgh~fc~~Cl~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~l~~~~~~~ 266 (494)
....+.|+||++.|.+|+.++|||+||..|+..++.....||.||. .. .++..|..+.+++..+
T Consensus 10 ~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~-~~---~~~~~n~~l~~~~~~~ 73 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWEGPLSCPVCRP-PS---RNLRPNVLLANLVERL 73 (386)
T ss_pred ccccccChhhHHHhhcCccccccchHhHHHHHHhcCCCcCCcccCC-ch---hccCccHHHHHHHHHH
Confidence 4478899999999999988999999999999998884457999995 32 2556788888887764
No 132
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.22 E-value=5.9e-06 Score=78.71 Aligned_cols=113 Identities=14% Similarity=0.162 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccc---cChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHH
Q 011050 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVL---GNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAEL 122 (494)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (494)
.+..+...|..++.+|+|++|+..|.+.+...|..+.+. .++|.+|++.++| .+
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y-----------------------~~ 87 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADL-----------------------PL 87 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCH-----------------------HH
Confidence 356788899999999999999999999999999887444 8899999999999 99
Q ss_pred HHHHHHHHhhccccch---HHHHHHHHHHHHHH------------------HHHHHHHHHHccccCCCCCchhHHHHHHH
Q 011050 123 ALKDAEKLLNLQSNSM---KSHLLKANALILLE------------------RYDMARDAILSGLQVDPFSNPLQASLQNL 181 (494)
Q Consensus 123 a~~~~~~al~l~p~~~---~a~~~~g~~~~~~~------------------~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 181 (494)
|+..+++.+++.|+++ .++|.+|.++..++ .-.+|+..|+..++.-|+..-+.++...+
T Consensus 88 A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl 167 (243)
T PRK10866 88 AQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRL 167 (243)
T ss_pred HHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHH
Confidence 9999999999998764 57899998864443 23578899999999999887665554433
No 133
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.21 E-value=4.2e-06 Score=94.26 Aligned_cols=108 Identities=20% Similarity=0.266 Sum_probs=74.1
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHH
Q 011050 50 LVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEK 129 (494)
Q Consensus 50 ~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 129 (494)
+...|..+...|++++|+..|.+++...|.++.+|..+|.++...|++ ++|+..+++
T Consensus 570 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----------------------~~A~~~~~~ 626 (899)
T TIGR02917 570 ALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDL-----------------------NKAVSSFKK 626 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH-----------------------HHHHHHHHH
Confidence 344555666666777777777777666666666677777777777777 777777777
Q ss_pred HhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHH
Q 011050 130 LLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQN 180 (494)
Q Consensus 130 al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~ 180 (494)
+++.+|.++.+++.+|.+|...|++++|+..|+++++.+|++..++..+..
T Consensus 627 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 677 (899)
T TIGR02917 627 LLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQ 677 (899)
T ss_pred HHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 777777777777777777777777777777777777777776655544433
No 134
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=5.3e-07 Score=84.18 Aligned_cols=105 Identities=22% Similarity=0.443 Sum_probs=81.2
Q ss_pred HhhccccchHHHHHHHHH-HHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHhhhhhhhccccCCCCCCCcccccccc
Q 011050 130 LLNLQSNSMKSHLLKANA-LILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASLIGRRIHGTPERTDDFDCTLC 208 (494)
Q Consensus 130 al~l~p~~~~a~~~~g~~-~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~iC 208 (494)
.+...|+-.+-|-..|.+ |.....|-.-..+|..+++|+-++.+.+.. ......-...-.+.|-||
T Consensus 181 ~~d~qpDicKdykeTgycg~gdSckFlh~r~DyK~GWqi~~e~d~~ke~-------------~~~~~~D~~~~Pf~c~ic 247 (313)
T KOG1813|consen 181 RIDYQPDICKDYKETGYCGYGDSCKFLHDRSDYKAGWQIEFEWDSAKEK-------------KRVKIEDIELLPFKCFIC 247 (313)
T ss_pred eeecCchhhhhhHhhCcccccchhhhhhhhhhccccceeehhhhccccc-------------cceecCCcccCCcccccc
Confidence 345567777777777776 556777888889999999998887765411 111112233456789999
Q ss_pred cccccCcEEcCCCCcccHhhHHHhccCCCCCCCCCcccc
Q 011050 209 LKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 247 (494)
Q Consensus 209 ~~~~~~Pv~~~cgh~fc~~Cl~~~~~~~~~CP~Cr~~~~ 247 (494)
...|.+||.+.|||+||..|....+..+..|++|.+.+.
T Consensus 248 r~~f~~pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 248 RKYFYRPVVTKCGHYFCEVCALKPYQKGEKCYVCSQQTH 286 (313)
T ss_pred ccccccchhhcCCceeehhhhccccccCCcceecccccc
Confidence 999999999999999999999999998999999999864
No 135
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.19 E-value=4.2e-06 Score=85.34 Aligned_cols=135 Identities=17% Similarity=0.112 Sum_probs=98.9
Q ss_pred hhHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHH----------hhhccCCCCCcccccc
Q 011050 42 DRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRIS----------QFLKHRPPSASEYRPL 111 (494)
Q Consensus 42 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~----------~~~~~~~~~~~~~~~~ 111 (494)
+.+.++++|...|......++-..||..+.++++++|++..++..+|.+|..-| +|++..+ ...|...
T Consensus 314 qdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p--~y~~l~~ 391 (579)
T KOG1125|consen 314 QDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKP--KYVHLVS 391 (579)
T ss_pred hChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCc--cchhccc
Confidence 456678999999999999999999999999999999999999999999887644 3433332 1111111
Q ss_pred CCCCC----------chhHHHHHHHHHHHhhccc--cchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHH
Q 011050 112 NGLDP----------TTHAELALKDAEKLLNLQS--NSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASL 178 (494)
Q Consensus 112 ~~~~~----------~~~~~~a~~~~~~al~l~p--~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~ 178 (494)
.+.+. -+.-....+.|-.|...+| .+++.+.-+|..|+..|+|++|++.|+.||+.+|+|..+|.-+
T Consensus 392 a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRL 470 (579)
T KOG1125|consen 392 AGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRL 470 (579)
T ss_pred cCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHh
Confidence 11111 1112344455666666667 6788888888888888899999999999999888888777654
No 136
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.19 E-value=3.6e-06 Score=78.26 Aligned_cols=106 Identities=20% Similarity=0.246 Sum_probs=96.0
Q ss_pred HHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHH
Q 011050 51 VQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKL 130 (494)
Q Consensus 51 ~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a 130 (494)
...+..++..|+-+.+.....++....|.+..++...+...+..|+| ..|+..++++
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~-----------------------~~A~~~~rkA 126 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNF-----------------------GEAVSVLRKA 126 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcch-----------------------HHHHHHHHHH
Confidence 45677777788888888888888888999988888889999999999 9999999999
Q ss_pred hhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHH
Q 011050 131 LNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQ 179 (494)
Q Consensus 131 l~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~ 179 (494)
..++|+++++|..+|.+|...|+++.|...|.+++++.|+++.+...+.
T Consensus 127 ~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlg 175 (257)
T COG5010 127 ARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLG 175 (257)
T ss_pred hccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHH
Confidence 9999999999999999999999999999999999999999998766553
No 137
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.17 E-value=1.7e-06 Score=65.84 Aligned_cols=41 Identities=44% Similarity=1.001 Sum_probs=33.7
Q ss_pred cccccccccccCc------------E-EcCCCCcccHhhHHHhccCCCCCCCCC
Q 011050 203 FDCTLCLKLLYEP------------I-TTPCGHSFCRSCLFQSMDRGNKCPLCR 243 (494)
Q Consensus 203 ~~C~iC~~~~~~P------------v-~~~cgh~fc~~Cl~~~~~~~~~CP~Cr 243 (494)
-.|.||++.+.+| + ..+|||.|+..||..|+.....||+||
T Consensus 20 d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 20 DNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp SBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 3499999998333 3 348999999999999999888999997
No 138
>KOG1400 consensus Predicted ATP-dependent protease PIL, contains LON domain [General function prediction only]
Probab=98.15 E-value=2.7e-06 Score=81.11 Aligned_cols=213 Identities=16% Similarity=0.147 Sum_probs=131.1
Q ss_pred cccccCCccccceee--eccCCCccCccccchhHHHHHHHHHhC--CceEEEEEeCCCCCccccccceEEEEEeeec-CC
Q 011050 281 LINFGVDLMPLFVMD--VVIPCQRFPLHIFEPRYRLMVRRIMEG--NHRMGMVIIDPTTGSVADFACEVEITECEPL-PD 355 (494)
Q Consensus 281 l~~~~~~~lPl~~l~--v~fP~~~~pl~i~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~iG~~~~I~~~~~~-~d 355 (494)
+.......+|+++.. |+|||.++|+.+..|+-+.+++..... ++.|.+.......+....-+|.++|...... +.
T Consensus 58 ldd~t~~~~p~~~~~~~v~~PgqtLPl~~i~~~~~s~~r~lvs~ar~~~F~vl~r~~v~~re~~r~tt~evd~~R~p~d~ 137 (371)
T KOG1400|consen 58 LDDDTTNWIPICGQVMAVLFPGQTLPLKFIDPQERSIVRRLVSSARDNGFVVLFRSDVPERESLRYTTTEVDAYRVPQDN 137 (371)
T ss_pred ecCCceeeecccCceeeEecCcccCcchhcCHHHHHHHHHHHHhhcCCceEEEecccchHHhhccccceeccccccchhh
Confidence 344455568999975 999999999999999888888888876 6778777765444444445666665532111 21
Q ss_pred -c--eEEEEEEeccceEEeeee-cCCCeeEEEEEEecCCCCC----C---------------------------cccHHh
Q 011050 356 -G--RFVLEIESRRRFRILRSW-DQDGYRVAEIEWVQDIHPE----G---------------------------VEDRAD 400 (494)
Q Consensus 356 -g--~~~v~~~g~~R~~i~~~~-~~~~~~~a~ve~l~d~~~~----~---------------------------~~~~~~ 400 (494)
| -..+...|+.|++++++. +..|.-.|+|+.+|+.... . .+.+.-
T Consensus 138 Fgn~l~~~~~~G~y~~~vl~lR~qs~g~~e~~~qL~P~~~i~~~~~Sf~~~~avq~~~~n~~~ia~~~n~~p~s~e~dm~ 217 (371)
T KOG1400|consen 138 FGNALSMVKAMGRYRCKVLKLRTQSLGRGEAEVQLLPDVEIPCLLPSFIPKSAVQLPAHNKCSIATRINGYPFSAERDMT 217 (371)
T ss_pred hhhhhhhhhhhcccccceeeecccCCCcccceEEeccccccccccccccchhhheecccCcceeccCCCCCccccccchh
Confidence 3 344556799999999985 4556677888877742100 0 000000
Q ss_pred HHHHHHHHHH----------HHHHHHHHHH---HHHHHhHHHHHHHhhhhcCCCCCCCcchhHHHHHhcCCCChHHHhhh
Q 011050 401 LQDLTNNAAE----------YARLWLRREK---ESARQDRRRLEKLLNVEVMMPPSQDPERFSFWLATLSDRRPSERLEL 467 (494)
Q Consensus 401 l~~l~~~~~~----------~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~ia~~l~l~~~~kq~L 467 (494)
-.+....+.. ....|..... -++.....+...|.+..+.-..+..|..|++++|+.+++...-+++|
T Consensus 218 sla~f~~i~sls~~h~~~ll~~~~was~tyqSy~la~rivenarl~yE~lk~ds~~~kpivlSf~~a~kihv~e~~~~hL 297 (371)
T KOG1400|consen 218 SLAVFRQIGSLSGFHGDDLLSWPKWASLTYQSYFLAKRIVENARLWYELLKEDSAPGKPIVLSFKYAWKIHVCERCREHL 297 (371)
T ss_pred hhhhheehhhhhhhcccccccccccchHHHHHHHHHHHHHHHHHHHHHhccccccCCCceEeehhhhhhhhhhHHHHHHH
Confidence 0000000000 0001111100 01111111122333332222345679999999999999999999999
Q ss_pred ccCCCHHHHHHHHHHHHHhhhccccC
Q 011050 468 LRIRDTRERIRRGLIFLRAEEQGCRL 493 (494)
Q Consensus 468 Le~~d~~~Rl~~l~~~L~~~~~~~~~ 493 (494)
|.+.++.-|+.+.+..++++.--||.
T Consensus 298 ~~~g~v~tRlq~e~~~~~k~ti~fCk 323 (371)
T KOG1400|consen 298 LWEGSVMTRLQREFFGIQKETITFCK 323 (371)
T ss_pred HhhcccccchheeeecccchhhhhhH
Confidence 99999999999999999998877765
No 139
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.15 E-value=7.4e-06 Score=90.63 Aligned_cols=110 Identities=13% Similarity=-0.004 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHH
Q 011050 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (494)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (494)
.+.....+|...+++|+|+.|+..|.++++.+|+++.+....+.++...|++ .+|+.
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~-----------------------~~A~~ 89 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRD-----------------------QEVID 89 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCc-----------------------HHHHH
Confidence 3457788899999999999999999999999999863333667777777877 77777
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHH
Q 011050 126 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASL 178 (494)
Q Consensus 126 ~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~ 178 (494)
.+++++.-+|.+..++..+|.+|..+|+|++|++.|+++++.+|+++++...+
T Consensus 90 ~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gL 142 (822)
T PRK14574 90 VYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGM 142 (822)
T ss_pred HHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 77777743344444444446677777777777777777777777777665443
No 140
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=5.5e-07 Score=86.03 Aligned_cols=70 Identities=31% Similarity=0.747 Sum_probs=58.1
Q ss_pred CCcccccccccccccCcEEc-CCCCcccHhhHHHhccC-CCCCCCCCcccccCCCCCcccccHHHHHHHhChH
Q 011050 199 RTDDFDCTLCLKLLYEPITT-PCGHSFCRSCLFQSMDR-GNKCPLCRAVLFITPRTCAVSVTLNSIIQKNFPE 269 (494)
Q Consensus 199 ~~~~~~C~iC~~~~~~Pv~~-~cgh~fc~~Cl~~~~~~-~~~CP~Cr~~~~~~~~~~~~~~~l~~~~~~~~p~ 269 (494)
...++.|+||+.+++...++ .|+|.||..||-..+.. ++.||.||+.+.. .+.+..+-....++.+.+|.
T Consensus 40 ~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~S-krsLr~Dp~fdaLis~i~~s 111 (381)
T KOG0311|consen 40 FDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVS-KRSLRIDPNFDALISKIYPS 111 (381)
T ss_pred hhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccc-cccCCCCccHHHHHHHHhcc
Confidence 44678999999999998775 89999999999888874 5679999999853 36777777778888887776
No 141
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.10 E-value=7.8e-06 Score=71.08 Aligned_cols=86 Identities=9% Similarity=-0.089 Sum_probs=74.8
Q ss_pred hccC-CCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHH
Q 011050 74 NNIK-PGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLE 152 (494)
Q Consensus 74 l~~~-p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~ 152 (494)
..+. ++.-...+.+|..++..|++ ++|...++-++.+||.+...|+.+|.++..+|
T Consensus 27 ~~~~~~~~l~~lY~~A~~ly~~G~l-----------------------~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g 83 (157)
T PRK15363 27 LDDDVTQPLNTLYRYAMQLMEVKEF-----------------------AGAARLFQLLTIYDAWSFDYWFRLGECCQAQK 83 (157)
T ss_pred HCCChHHHHHHHHHHHHHHHHCCCH-----------------------HHHHHHHHHHHHhCcccHHHHHHHHHHHHHHh
Confidence 3455 55666777788889999999 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHccccCCCCCchhHHHHHHHH
Q 011050 153 RYDMARDAILSGLQVDPFSNPLQASLQNLE 182 (494)
Q Consensus 153 ~~~~A~~~~~~al~l~p~~~~~~~~~~~~~ 182 (494)
+|++|++.|.+|+.++|+++...-....+.
T Consensus 84 ~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 84 HWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred hHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 999999999999999999997655444433
No 142
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.08 E-value=3.1e-06 Score=81.15 Aligned_cols=47 Identities=36% Similarity=0.788 Sum_probs=36.6
Q ss_pred cccccccccc-cccCcE---E-cCCCCcccHhhHHHhccCC-CCCCCCCcccc
Q 011050 201 DDFDCTLCLK-LLYEPI---T-TPCGHSFCRSCLFQSMDRG-NKCPLCRAVLF 247 (494)
Q Consensus 201 ~~~~C~iC~~-~~~~Pv---~-~~cgh~fc~~Cl~~~~~~~-~~CP~Cr~~~~ 247 (494)
++..||+|.. .+.+|- . .+|||.||.+|+...|..+ ..||.|+.++.
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lr 54 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLR 54 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccc
Confidence 4568999997 355663 2 2799999999999977654 47999999874
No 143
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=2e-05 Score=77.76 Aligned_cols=98 Identities=14% Similarity=0.209 Sum_probs=85.4
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHH
Q 011050 50 LVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEK 129 (494)
Q Consensus 50 ~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 129 (494)
+.+.+..+.+.++|..|+...+++|.++|+|..+++.||.|+..+++| +.|..++++
T Consensus 260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~-----------------------~~A~~df~k 316 (397)
T KOG0543|consen 260 HLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEY-----------------------DLARDDFQK 316 (397)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccH-----------------------HHHHHHHHH
Confidence 456777788999999999999999999999999999999999999999 999999999
Q ss_pred HhhccccchHHHHHHHHHHHHHHHHHH-HHHHHHccccCCCC
Q 011050 130 LLNLQSNSMKSHLLKANALILLERYDM-ARDAILSGLQVDPF 170 (494)
Q Consensus 130 al~l~p~~~~a~~~~g~~~~~~~~~~~-A~~~~~~al~l~p~ 170 (494)
|++++|.|-.+...+..+-...+++.+ ..+.|...+..-+.
T Consensus 317 a~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~~ 358 (397)
T KOG0543|consen 317 ALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLAE 358 (397)
T ss_pred HHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 999999998888888887766555555 47788888775543
No 144
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.07 E-value=1.4e-05 Score=67.02 Aligned_cols=96 Identities=23% Similarity=0.111 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHhccCCCC---cccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHH
Q 011050 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGD---PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 124 (494)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 124 (494)
..+++.|..+-..|+.++|+..|.+|+...... ..++.++|.++..+|++ ++|+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~-----------------------deA~ 58 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRY-----------------------DEAL 58 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCH-----------------------HHHH
Confidence 356788999999999999999999999976544 47888999999999999 9999
Q ss_pred HHHHHHhhcccc---chHHHHHHHHHHHHHHHHHHHHHHHHcccc
Q 011050 125 KDAEKLLNLQSN---SMKSHLLKANALILLERYDMARDAILSGLQ 166 (494)
Q Consensus 125 ~~~~~al~l~p~---~~~a~~~~g~~~~~~~~~~~A~~~~~~al~ 166 (494)
..+++++.-.|+ +......++.++...|++++|+..+..++.
T Consensus 59 ~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 59 ALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999998887 778888899999999999999999988774
No 145
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=8.3e-06 Score=78.78 Aligned_cols=124 Identities=18% Similarity=0.224 Sum_probs=104.0
Q ss_pred hHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCC-------------------CCcccccChhHHHHHHHhhhccCCC
Q 011050 43 RYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKP-------------------GDPIVLGNRSSAYIRISQFLKHRPP 103 (494)
Q Consensus 43 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p-------------------~~~~~~~~~a~~~~~~~~~~~~~~~ 103 (494)
........+..|+..|++++|..|...|.+++..-. .....+.|.+.+-++++.+
T Consensus 218 ~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~------ 291 (372)
T KOG0546|consen 218 ALEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGR------ 291 (372)
T ss_pred hhhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCC------
Confidence 344566778899999999999999999999986521 1125666777788888888
Q ss_pred CCccccccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHh
Q 011050 104 SASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLER 183 (494)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~ 183 (494)
..|+.....+++.++...++||++|.++..+.++++|..++..+....|+++.+.+.+....+
T Consensus 292 -----------------~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~ 354 (372)
T KOG0546|consen 292 -----------------GGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQ 354 (372)
T ss_pred -----------------CcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhh
Confidence 788888888888999999999999999999999999999999999999999999888887776
Q ss_pred hhhhhh
Q 011050 184 TTASLI 189 (494)
Q Consensus 184 ~~~~~~ 189 (494)
.+....
T Consensus 355 ~~~~~~ 360 (372)
T KOG0546|consen 355 KKKQYN 360 (372)
T ss_pred HHHHHH
Confidence 665544
No 146
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.04 E-value=1.7e-05 Score=87.85 Aligned_cols=107 Identities=13% Similarity=0.109 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHH
Q 011050 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDA 127 (494)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 127 (494)
..+...|..+..+|+|++|+..|.++++.+|+++.++..++..|...+++ .+|++.+
T Consensus 103 ~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~-----------------------~eAl~~l 159 (822)
T PRK14574 103 RGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRG-----------------------GVVLKQA 159 (822)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCH-----------------------HHHHHHH
Confidence 44455577888889999999999999999999999998888888888888 9999999
Q ss_pred HHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHH
Q 011050 128 EKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASL 178 (494)
Q Consensus 128 ~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~ 178 (494)
.+++..+|.+... ..++.++..++++.+|+..|+++++++|++.++...+
T Consensus 160 ~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~ 209 (822)
T PRK14574 160 TELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNH 209 (822)
T ss_pred HHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 9999999985443 4455555557777779999999999999988764433
No 147
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=2.5e-05 Score=79.62 Aligned_cols=115 Identities=23% Similarity=0.215 Sum_probs=93.9
Q ss_pred HHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHH
Q 011050 51 VQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKL 130 (494)
Q Consensus 51 ~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a 130 (494)
+=-|..+...+++.-|-..|.+|+.+.|+++.++.-.|.+.+..+.| .+|+..++++
T Consensus 384 LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y-----------------------~~A~~~f~~~ 440 (611)
T KOG1173|consen 384 LYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEY-----------------------PEALKYFQKA 440 (611)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhh-----------------------HHHHHHHHHH
Confidence 34577777778888888888888888888888888888888888888 9999999999
Q ss_pred hhc----c---ccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHhhhhhh
Q 011050 131 LNL----Q---SNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASL 188 (494)
Q Consensus 131 l~l----~---p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~ 188 (494)
+.. + +.+...+.++|.+|..++++++|+..|+++|.+.|.+...+..+.-+...+++.
T Consensus 441 l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnl 505 (611)
T KOG1173|consen 441 LEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNL 505 (611)
T ss_pred HHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCh
Confidence 832 2 235667889999999999999999999999999999998877766555444443
No 148
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.01 E-value=4.6e-05 Score=82.14 Aligned_cols=114 Identities=17% Similarity=0.159 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCC-cccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHH
Q 011050 44 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD-PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAEL 122 (494)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (494)
.-.+..++..|..+..+|+|++|-.+|.+++..+|++ .-.++++|+.|+..|++ ..
T Consensus 304 ~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dl-----------------------e~ 360 (1018)
T KOG2002|consen 304 SIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDL-----------------------EE 360 (1018)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchH-----------------------HH
Confidence 3456789999999999999999999999999999998 78899999999999999 99
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHH----HHHHHHHHHHccccCCCCCchhHHHHHH
Q 011050 123 ALKDAEKLLNLQSNSMKSHLLKANALILLE----RYDMARDAILSGLQVDPFSNPLQASLQN 180 (494)
Q Consensus 123 a~~~~~~al~l~p~~~~a~~~~g~~~~~~~----~~~~A~~~~~~al~l~p~~~~~~~~~~~ 180 (494)
|..-+++++...|++.+....+|..|...+ ..++|.....++++..|.+.+++-.+..
T Consensus 361 s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laq 422 (1018)
T KOG2002|consen 361 SKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQ 422 (1018)
T ss_pred HHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 999999999999999999999999998775 6788999999999999998877665543
No 149
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.01 E-value=7.3e-06 Score=77.68 Aligned_cols=83 Identities=18% Similarity=0.225 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHH
Q 011050 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDA 127 (494)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 127 (494)
--|-.+|-.|.+-|.|+.|+.....||.+||....+|..+|.+|+.+|+| .+|++.|
T Consensus 116 VyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~-----------------------~~A~~ay 172 (304)
T KOG0553|consen 116 VYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKY-----------------------EEAIEAY 172 (304)
T ss_pred hHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcH-----------------------HHHHHHH
Confidence 34567888999999999999999999999999999999999999999999 9999999
Q ss_pred HHHhhccccchHHHHHHHHHHHHHHH
Q 011050 128 EKLLNLQSNSMKSHLLKANALILLER 153 (494)
Q Consensus 128 ~~al~l~p~~~~a~~~~g~~~~~~~~ 153 (494)
.|||+++|++....-.+..+-..+++
T Consensus 173 kKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 173 KKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred HhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 99999999997555555544444433
No 150
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=97.99 E-value=8e-06 Score=79.75 Aligned_cols=110 Identities=22% Similarity=0.242 Sum_probs=70.4
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHhccC--CCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHH
Q 011050 50 LVQKGNRAFRESNFEEAISNYSRANNIK--PGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDA 127 (494)
Q Consensus 50 ~~~~g~~~~~~~~~~~Ai~~y~~al~~~--p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 127 (494)
+......+...++++++...+.++.... +.++.+|..+|.++.+.|++ ++|++.+
T Consensus 113 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~-----------------------~~A~~~~ 169 (280)
T PF13429_consen 113 LLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDP-----------------------DKALRDY 169 (280)
T ss_dssp -----H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHH-----------------------HHHHHHH
T ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCH-----------------------HHHHHHH
Confidence 3344555667777777777777766544 56677777788888888887 7888888
Q ss_pred HHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHH
Q 011050 128 EKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLE 182 (494)
Q Consensus 128 ~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~ 182 (494)
+++++++|++..+...++.++...|+++++...+....+..|.++.++..+..+.
T Consensus 170 ~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~ 224 (280)
T PF13429_consen 170 RKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAY 224 (280)
T ss_dssp HHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHh
Confidence 8888888888887777777777778887766666666666666666555444333
No 151
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.96 E-value=4e-05 Score=59.65 Aligned_cols=76 Identities=24% Similarity=0.270 Sum_probs=68.0
Q ss_pred cccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 011050 83 VLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAIL 162 (494)
Q Consensus 83 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~ 162 (494)
++.++|.+++..|++ .+|+..++++++..|.+..+++.+|.++...+++++|++.+.
T Consensus 2 ~~~~~a~~~~~~~~~-----------------------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 58 (100)
T cd00189 2 ALLNLGNLYYKLGDY-----------------------DEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYE 58 (100)
T ss_pred HHHHHHHHHHHHhcH-----------------------HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467789999999999 999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCchhHHHHHHH
Q 011050 163 SGLQVDPFSNPLQASLQNL 181 (494)
Q Consensus 163 ~al~l~p~~~~~~~~~~~~ 181 (494)
+++++.|.+..+...+..+
T Consensus 59 ~~~~~~~~~~~~~~~~~~~ 77 (100)
T cd00189 59 KALELDPDNAKAYYNLGLA 77 (100)
T ss_pred HHHhCCCcchhHHHHHHHH
Confidence 9999999888655544433
No 152
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.96 E-value=4.5e-05 Score=81.57 Aligned_cols=96 Identities=21% Similarity=0.192 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHH
Q 011050 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDA 127 (494)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 127 (494)
..|+.-|....+.|++.+|+-+|++||+.+|.+-..+++|+..|-++|++ ..|+.-+
T Consensus 208 e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~-----------------------~~Am~~f 264 (895)
T KOG2076|consen 208 ELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDL-----------------------KRAMETF 264 (895)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChH-----------------------HHHHHHH
Confidence 45667777778889999999999999999999999999999999999999 9999999
Q ss_pred HHHhhccc----cchHH-HHHHHHHHHHHHHHHHHHHHHHcccc
Q 011050 128 EKLLNLQS----NSMKS-HLLKANALILLERYDMARDAILSGLQ 166 (494)
Q Consensus 128 ~~al~l~p----~~~~a-~~~~g~~~~~~~~~~~A~~~~~~al~ 166 (494)
.++++++| ....+ .+..+..+...++-+.|++.+..++.
T Consensus 265 ~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 265 LQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99999999 33333 34447778888888999999999987
No 153
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.96 E-value=3e-05 Score=78.28 Aligned_cols=122 Identities=14% Similarity=0.055 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCC-----------
Q 011050 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDP----------- 116 (494)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 116 (494)
.....+|..++..|++++|+..+.++++.+|++..++.. +..++.++.+.............+...+|
T Consensus 44 e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~ 122 (355)
T cd05804 44 ERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAF 122 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHH
Confidence 445678999999999999999999999999999877665 66666666552222111111111111111
Q ss_pred ----chhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCC
Q 011050 117 ----TTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPF 170 (494)
Q Consensus 117 ----~~~~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~ 170 (494)
+....+|+..++++++++|++..++..+|.+|+..|++++|+..+.+++...|.
T Consensus 123 ~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~ 180 (355)
T cd05804 123 GLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC 180 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC
Confidence 112256666677777777776666666777777777777777777777666654
No 154
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.95 E-value=5.3e-05 Score=70.12 Aligned_cols=109 Identities=17% Similarity=0.130 Sum_probs=97.0
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHH
Q 011050 50 LVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEK 129 (494)
Q Consensus 50 ~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 129 (494)
...+|..+-..|+|++|+..|+.-++-+|.|..+|-..-.+.-.+|+- -+|++....
T Consensus 89 ~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~-----------------------l~aIk~ln~ 145 (289)
T KOG3060|consen 89 GKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKN-----------------------LEAIKELNE 145 (289)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCc-----------------------HHHHHHHHH
Confidence 344666777789999999999999999999999988777777778887 799999999
Q ss_pred HhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHH
Q 011050 130 LLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (494)
Q Consensus 130 al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 181 (494)
-++..+.+.+||..++.+|...|+|++|.=.|++.+-++|.++-....+..+
T Consensus 146 YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~ 197 (289)
T KOG3060|consen 146 YLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEV 197 (289)
T ss_pred HHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999876665554
No 155
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.95 E-value=2.5e-05 Score=78.83 Aligned_cols=101 Identities=12% Similarity=0.009 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHH
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (494)
...+...|..+...|++++|+..|.++++++|+++.++..+|.+++..|++ ++|+..
T Consensus 114 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~-----------------------~eA~~~ 170 (355)
T cd05804 114 WYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRF-----------------------KEGIAF 170 (355)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCH-----------------------HHHHHH
Confidence 455567888999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccch----HHHHHHHHHHHHHHHHHHHHHHHHccccCCCC
Q 011050 127 AEKLLNLQSNSM----KSHLLKANALILLERYDMARDAILSGLQVDPF 170 (494)
Q Consensus 127 ~~~al~l~p~~~----~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~ 170 (494)
+.+++...|..+ ..|+.+|.++...|++++|+..|++++...|.
T Consensus 171 l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~ 218 (355)
T cd05804 171 MESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAE 218 (355)
T ss_pred HHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccC
Confidence 999999886432 35668999999999999999999999877764
No 156
>PRK11906 transcriptional regulator; Provisional
Probab=97.94 E-value=1.7e-05 Score=80.03 Aligned_cols=91 Identities=15% Similarity=0.019 Sum_probs=85.3
Q ss_pred cChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhccccchHH
Q 011050 61 SNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKS 140 (494)
Q Consensus 61 ~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~a 140 (494)
.+-.+|+.+-.+|++++|.|+.++..+|.++...+++ +.|+..+++|+.++|+++.+
T Consensus 318 ~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~-----------------------~~a~~~f~rA~~L~Pn~A~~ 374 (458)
T PRK11906 318 LAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQA-----------------------KVSHILFEQAKIHSTDIASL 374 (458)
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcch-----------------------hhHHHHHHHHhhcCCccHHH
Confidence 4456788999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHccccCCCCCchh
Q 011050 141 HLLKANALILLERYDMARDAILSGLQVDPFSNPL 174 (494)
Q Consensus 141 ~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~ 174 (494)
|+..|.++...|+.++|++.+++|++++|.-..+
T Consensus 375 ~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 375 YYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 9999999999999999999999999999986653
No 157
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.93 E-value=2.7e-05 Score=81.54 Aligned_cols=105 Identities=14% Similarity=0.092 Sum_probs=93.7
Q ss_pred HHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhh
Q 011050 53 KGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLN 132 (494)
Q Consensus 53 ~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~ 132 (494)
.|.-.+..++|++|..++..+++++|-....|+++|-|..+++++ +.|..+|...+.
T Consensus 491 ~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~-----------------------q~av~aF~rcvt 547 (777)
T KOG1128|consen 491 LALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKE-----------------------QAAVKAFHRCVT 547 (777)
T ss_pred hccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhh-----------------------HHHHHHHHHHhh
Confidence 344456679999999999999999999999999999999999999 999999999999
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHH
Q 011050 133 LQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQN 180 (494)
Q Consensus 133 l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~ 180 (494)
++|++..+|.+++.+|..+++-.+|...+.+|++-+-.+-.+++...-
T Consensus 548 L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENyml 595 (777)
T KOG1128|consen 548 LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYML 595 (777)
T ss_pred cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhh
Confidence 999999999999999999999999999999999998666666655433
No 158
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.92 E-value=1.4e-05 Score=71.79 Aligned_cols=108 Identities=11% Similarity=0.067 Sum_probs=88.5
Q ss_pred HHHHHHHhcChHHHHHHHHHHhccCCCC--cccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHH
Q 011050 53 KGNRAFRESNFEEAISNYSRANNIKPGD--PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKL 130 (494)
Q Consensus 53 ~g~~~~~~~~~~~Ai~~y~~al~~~p~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a 130 (494)
+.+++|-.+.|..+...+...++..+.+ ..+|.+.|.++...|++ ++|+..++++
T Consensus 5 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~-----------------------~~A~~~~~~a 61 (168)
T CHL00033 5 QRNDNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEY-----------------------AEALQNYYEA 61 (168)
T ss_pred cccccccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCH-----------------------HHHHHHHHHH
Confidence 4566677777777777776666666655 57778999999999999 9999999999
Q ss_pred hhccccc---hHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHh
Q 011050 131 LNLQSNS---MKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLER 183 (494)
Q Consensus 131 l~l~p~~---~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~ 183 (494)
+.+.|+. +.+|+.+|.+|..+|++++|+..|.++++++|.+......+..+-.
T Consensus 62 l~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 62 MRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred HhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 9987763 4589999999999999999999999999999998876655544443
No 159
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.91 E-value=4.7e-05 Score=72.74 Aligned_cols=103 Identities=8% Similarity=0.020 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHH
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (494)
|.-+=+.|..+....++++|+....+|++.+|++.-+-..+|.++...|+| ..|++.
T Consensus 180 AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y-----------------------~~AV~~ 236 (389)
T COG2956 180 AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDY-----------------------QKAVEA 236 (389)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccch-----------------------HHHHHH
Confidence 344456677777778888888888888888888888888888888888888 888888
Q ss_pred HHHHhhccccch-HHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCc
Q 011050 127 AEKLLNLQSNSM-KSHLLKANALILLERYDMARDAILSGLQVDPFSN 172 (494)
Q Consensus 127 ~~~al~l~p~~~-~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~ 172 (494)
++.+++.||++. ...-.+..||..+|+.++....+.++.+..+...
T Consensus 237 ~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~ 283 (389)
T COG2956 237 LERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD 283 (389)
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc
Confidence 888888888774 4566777788888888888888888887776654
No 160
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.88 E-value=4.9e-05 Score=76.91 Aligned_cols=98 Identities=20% Similarity=0.155 Sum_probs=77.8
Q ss_pred HHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHh
Q 011050 52 QKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLL 131 (494)
Q Consensus 52 ~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al 131 (494)
..+..++..++..+|+....+++...|.++.++..-|..+++.+++ +.|+..+++|+
T Consensus 205 ~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~-----------------------~lAL~iAk~av 261 (395)
T PF09295_consen 205 LLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKY-----------------------ELALEIAKKAV 261 (395)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH-----------------------HHHHHHHHHHH
Confidence 3566666677778888888888888888888888888888888888 88888888888
Q ss_pred hccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCc
Q 011050 132 NLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSN 172 (494)
Q Consensus 132 ~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~ 172 (494)
.+.|+..++|+.+|.+|..+|+|+.|+..++.+-...+.++
T Consensus 262 ~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~~~~k 302 (395)
T PF09295_consen 262 ELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLTYKDK 302 (395)
T ss_pred HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCCCccc
Confidence 88888888888888888888888888888776644433333
No 161
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.85 E-value=5.9e-05 Score=78.06 Aligned_cols=119 Identities=11% Similarity=0.039 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHH
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (494)
-..++.++...|..++|.+.+...++.+.-.|....-+...|..+..+|+- ++|...
T Consensus 7 E~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~-----------------------~ea~~~ 63 (700)
T KOG1156|consen 7 ENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKK-----------------------EEAYEL 63 (700)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccch-----------------------HHHHHH
Confidence 457788888999999999999999999999999998888888888899998 899999
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHhhhhhh
Q 011050 127 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASL 188 (494)
Q Consensus 127 ~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~ 188 (494)
.+.+++.|+.+.-.|..+|.++...++|++|++.|..|++++|+|.++...+..++..|...
T Consensus 64 vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~ 125 (700)
T KOG1156|consen 64 VRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDY 125 (700)
T ss_pred HHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh
Confidence 99999999999889999999999999999999999999999999999888888777766543
No 162
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=1.3e-05 Score=84.66 Aligned_cols=75 Identities=28% Similarity=0.617 Sum_probs=54.0
Q ss_pred hhHHHHHHHHhhhhhhhccccCCC---------CCCCcccccccccccccCcEEcCCCCcccHhhHHHhcc-CCCCCCCC
Q 011050 173 PLQASLQNLERTTASLIGRRIHGT---------PERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMD-RGNKCPLC 242 (494)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~C~iC~~~~~~Pv~~~cgh~fc~~Cl~~~~~-~~~~CP~C 242 (494)
.+.+.+..+++.+...++...... .....-+.|+.|..-.++.|++.|||.||..|+..... ....||.|
T Consensus 605 rleEE~e~L~~kle~~k~~~~~~s~d~~L~EElk~yK~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~C 684 (698)
T KOG0978|consen 605 RLEEELERLKRKLERLKKEESGASADEVLAEELKEYKELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKC 684 (698)
T ss_pred HHHHHHHHHHHHHHHhccccccccccHHHHHHHHHHHhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCC
Confidence 445555566666655554332111 11345679999999999999999999999999998776 45689999
Q ss_pred Ccccc
Q 011050 243 RAVLF 247 (494)
Q Consensus 243 r~~~~ 247 (494)
+..+.
T Consensus 685 n~aFg 689 (698)
T KOG0978|consen 685 NAAFG 689 (698)
T ss_pred CCCCC
Confidence 99873
No 163
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.81 E-value=9.5e-05 Score=79.75 Aligned_cols=111 Identities=20% Similarity=0.199 Sum_probs=89.7
Q ss_pred HHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhc
Q 011050 54 GNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNL 133 (494)
Q Consensus 54 g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l 133 (494)
|-.+...|+|..|+..|+++.+.-.++..+|.|+|.||+..|+| -.|++.|+.++..
T Consensus 653 giVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy-----------------------~~AIqmYe~~lkk 709 (1018)
T KOG2002|consen 653 GIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQY-----------------------RLAIQMYENCLKK 709 (1018)
T ss_pred hhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHH-----------------------HHHHHHHHHHHHH
Confidence 33445566677777777776666666679999999999999999 9999999999986
Q ss_pred c--ccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHhhhhh
Q 011050 134 Q--SNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTAS 187 (494)
Q Consensus 134 ~--p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~ 187 (494)
. .+.+..+..+|.+++..|.+.+|++++..|+.+.|.|+.+.-.+..+.+.+..
T Consensus 710 f~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~ 765 (1018)
T KOG2002|consen 710 FYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAE 765 (1018)
T ss_pred hcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHH
Confidence 4 36788899999999999999999999999999999999876665555554443
No 164
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.80 E-value=6e-05 Score=82.98 Aligned_cols=127 Identities=9% Similarity=-0.110 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHH
Q 011050 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (494)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (494)
+..++......+...+++++|+.....+++..|+...+|+..|..+++.+++- +.+-. .+..+-+...-..+++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~---~~~lv---~~l~~~~~~~~~~~ve 103 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLN---DSNLL---NLIDSFSQNLKWAIVE 103 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchh---hhhhh---hhhhhcccccchhHHH
Confidence 35677778888889999999999999999999999999999999999888861 10000 1111111111135566
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHH
Q 011050 126 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASL 178 (494)
Q Consensus 126 ~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~ 178 (494)
++...+...+.+-.|++.+|.||..+|++++|.+.|+++++++|+|+.+.+.+
T Consensus 104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~ 156 (906)
T PRK14720 104 HICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKL 156 (906)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHH
Confidence 66666666677778999999999999999999999999999999999765543
No 165
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=9.8e-06 Score=77.79 Aligned_cols=49 Identities=31% Similarity=0.770 Sum_probs=41.6
Q ss_pred CCcccccccccccc-cCc------------EEcCCCCcccHhhHHHhccCCCCCCCCCcccc
Q 011050 199 RTDDFDCTLCLKLL-YEP------------ITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 247 (494)
Q Consensus 199 ~~~~~~C~iC~~~~-~~P------------v~~~cgh~fc~~Cl~~~~~~~~~CP~Cr~~~~ 247 (494)
..++..|.||.+-+ ..| ..+||||.++.+|+..|....-.||.||.++.
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~i 345 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVI 345 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCccc
Confidence 34678899999874 433 67899999999999999998889999999963
No 166
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.79 E-value=5.3e-05 Score=73.33 Aligned_cols=97 Identities=22% Similarity=0.185 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCc------ccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHH
Q 011050 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP------IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAE 121 (494)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (494)
......|+.+...+-|+++++.|..|+++.-++. .++..++..|..+.+| +
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~-----------------------~ 179 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDY-----------------------E 179 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhh-----------------------h
Confidence 4455689999999999999999999998854433 5677788888889998 7
Q ss_pred HHHHHHHHHhhcccc----------chHHHHHHHHHHHHHHHHHHHHHHHHccccC
Q 011050 122 LALKDAEKLLNLQSN----------SMKSHLLKANALILLERYDMARDAILSGLQV 167 (494)
Q Consensus 122 ~a~~~~~~al~l~p~----------~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 167 (494)
+|+-...+|.++-.. ...++|.++-+|..+|+.-+|.+..+++.++
T Consensus 180 Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kl 235 (518)
T KOG1941|consen 180 KALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKL 235 (518)
T ss_pred HHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 777777777665321 1235667777777777777777777777665
No 167
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.78 E-value=7.6e-06 Score=63.19 Aligned_cols=64 Identities=17% Similarity=0.249 Sum_probs=55.4
Q ss_pred cccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhcc-------ccchHHHHHHHHHHHHHHH
Q 011050 81 PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQ-------SNSMKSHLLKANALILLER 153 (494)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~-------p~~~~a~~~~g~~~~~~~~ 153 (494)
..+|.++|.+|..+|+| ++|+..+++++++. |....+++.+|.+|..+|+
T Consensus 5 a~~~~~la~~~~~~~~~-----------------------~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~ 61 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRY-----------------------DEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGD 61 (78)
T ss_dssp HHHHHHHHHHHHHTT-H-----------------------HHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHcCCH-----------------------HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCC
Confidence 46788999999999999 99999999999762 3346789999999999999
Q ss_pred HHHHHHHHHccccC
Q 011050 154 YDMARDAILSGLQV 167 (494)
Q Consensus 154 ~~~A~~~~~~al~l 167 (494)
+++|+..+++++++
T Consensus 62 ~~~A~~~~~~al~i 75 (78)
T PF13424_consen 62 YEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999999864
No 168
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.78 E-value=2.3e-05 Score=84.39 Aligned_cols=110 Identities=21% Similarity=0.132 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHH
Q 011050 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDA 127 (494)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 127 (494)
..|..+|-.+.+.+++-+|+..++.|++.+|+|..+|..+|.+|...|+| ..|++.+
T Consensus 563 ~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry-----------------------~~AlKvF 619 (1238)
T KOG1127|consen 563 ENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRY-----------------------SHALKVF 619 (1238)
T ss_pred hhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCce-----------------------ehHHHhh
Confidence 45677999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHH
Q 011050 128 EKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQN 180 (494)
Q Consensus 128 ~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~ 180 (494)
.||..++|.+..+-|..|...+.+|+|.+|++.+...+.........+..+..
T Consensus 620 ~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE 672 (1238)
T KOG1127|consen 620 TKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAE 672 (1238)
T ss_pred hhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 99999999999999999999999999999999999988776665555554443
No 169
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.77 E-value=9.8e-05 Score=77.87 Aligned_cols=120 Identities=19% Similarity=0.087 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHH
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (494)
..-|...|..+.+.++-++|..+..+|-.++|..+..|+.+|.++...|++ .+|...
T Consensus 650 ~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~-----------------------~EA~~a 706 (799)
T KOG4162|consen 650 QKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQL-----------------------EEAKEA 706 (799)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhh-----------------------HHHHHH
Confidence 345667777777778888999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHHHHHHHHH--HHHccccCCCCCchhHHHHHHHHhhhhhhh
Q 011050 127 AEKLLNLQSNSMKSHLLKANALILLERYDMARD--AILSGLQVDPFSNPLQASLQNLERTTASLI 189 (494)
Q Consensus 127 ~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~--~~~~al~l~p~~~~~~~~~~~~~~~~~~~~ 189 (494)
|..|+.+||+++.+...+|.+|...|+..-|.+ .+..++++||.|.++|-.+..+-++.....
T Consensus 707 f~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~ 771 (799)
T KOG4162|consen 707 FLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSK 771 (799)
T ss_pred HHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchH
Confidence 999999999999999999999999998887777 999999999999999999988877775544
No 170
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=2.6e-05 Score=76.13 Aligned_cols=45 Identities=24% Similarity=0.621 Sum_probs=39.0
Q ss_pred cccccccccccCc---EEcCCCCcccHhhHHHhccCC-CCCCCCCcccc
Q 011050 203 FDCTLCLKLLYEP---ITTPCGHSFCRSCLFQSMDRG-NKCPLCRAVLF 247 (494)
Q Consensus 203 ~~C~iC~~~~~~P---v~~~cgh~fc~~Cl~~~~~~~-~~CP~Cr~~~~ 247 (494)
..|.||++-|..- ..+||+|.|+..|+..|+... ..||+|++...
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~ 278 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIR 278 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCC
Confidence 6999999988765 458999999999999999865 56999999764
No 171
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.72 E-value=2.3e-05 Score=49.93 Aligned_cols=32 Identities=22% Similarity=0.173 Sum_probs=30.7
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHHHHHHHH
Q 011050 127 AEKLLNLQSNSMKSHLLKANALILLERYDMAR 158 (494)
Q Consensus 127 ~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~ 158 (494)
+++||+++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 68999999999999999999999999999986
No 172
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.71 E-value=0.00032 Score=72.82 Aligned_cols=139 Identities=22% Similarity=0.158 Sum_probs=102.3
Q ss_pred HHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHh-------hhccCCCCCccccc---cCCCCCchhHH
Q 011050 52 QKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQ-------FLKHRPPSASEYRP---LNGLDPTTHAE 121 (494)
Q Consensus 52 ~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~-------~~~~~~~~~~~~~~---~~~~~~~~~~~ 121 (494)
.-+......||...|.....+|++.+|++-.+|..--...+...+ +-+++..+.++.-+ ..-.-.++..+
T Consensus 589 M~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~e 668 (913)
T KOG0495|consen 589 MYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVE 668 (913)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHH
Confidence 344555677888899999999999999876655432222222111 12222233333222 12222445559
Q ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHhhhhhhhc
Q 011050 122 LALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASLIG 190 (494)
Q Consensus 122 ~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~ 190 (494)
+|++.++.+++.-|++.+.|..+|+++..+++.+.|.+.|..+++..|+...++..+.+++++..+..+
T Consensus 669 eA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~r 737 (913)
T KOG0495|consen 669 EALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVR 737 (913)
T ss_pred HHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhh
Confidence 999999999999999999999999999999999999999999999999999999999999888765544
No 173
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.69 E-value=2.2e-05 Score=49.99 Aligned_cols=34 Identities=24% Similarity=0.263 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCC
Q 011050 138 MKSHLLKANALILLERYDMARDAILSGLQVDPFS 171 (494)
Q Consensus 138 ~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~ 171 (494)
+++|+.+|.+|..+|++++|+.+|++|++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 4689999999999999999999999999999974
No 174
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.65 E-value=0.00011 Score=61.06 Aligned_cols=68 Identities=16% Similarity=0.158 Sum_probs=62.3
Q ss_pred ccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhccccc---hHHHHHHHHHHHHHHHHHHHH
Q 011050 82 IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNS---MKSHLLKANALILLERYDMAR 158 (494)
Q Consensus 82 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~---~~a~~~~g~~~~~~~~~~~A~ 158 (494)
..++..|..+...|++ ++|+..+.++++.+|++ ..+++.+|.++...|++++|+
T Consensus 3 ~~~~~~~~~~~~~~~~-----------------------~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 59 (119)
T TIGR02795 3 EAYYDAALLVLKAGDY-----------------------ADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAA 59 (119)
T ss_pred HHHHHHHHHHHHcCCH-----------------------HHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHH
Confidence 4567888999999999 99999999999999876 579999999999999999999
Q ss_pred HHHHccccCCCCCc
Q 011050 159 DAILSGLQVDPFSN 172 (494)
Q Consensus 159 ~~~~~al~l~p~~~ 172 (494)
..|+.++..+|++.
T Consensus 60 ~~~~~~~~~~p~~~ 73 (119)
T TIGR02795 60 KAFLAVVKKYPKSP 73 (119)
T ss_pred HHHHHHHHHCCCCC
Confidence 99999999999864
No 175
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.64 E-value=0.0003 Score=72.66 Aligned_cols=120 Identities=11% Similarity=0.070 Sum_probs=102.5
Q ss_pred hHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHH
Q 011050 43 RYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAEL 122 (494)
Q Consensus 43 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (494)
..+++.....+|...+..|||+.|.....++.+..|+....+.-.|.++...|++ +.
T Consensus 80 ~~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~-----------------------~~ 136 (409)
T TIGR00540 80 KRRKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDE-----------------------AR 136 (409)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCH-----------------------HH
Confidence 3446777889999999999999999999999999998888888888999999999 99
Q ss_pred HHHHHHHHhhccccch-HHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHhhh
Q 011050 123 ALKDAEKLLNLQSNSM-KSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTT 185 (494)
Q Consensus 123 a~~~~~~al~l~p~~~-~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~ 185 (494)
|.+.+.++.+..|++. ......+.++...|++++|...+++.++.+|+++.+...+..+....
T Consensus 137 A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~ 200 (409)
T TIGR00540 137 ANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRS 200 (409)
T ss_pred HHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999888875 45555699999999999999999999999999998776665544333
No 176
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=3e-05 Score=72.61 Aligned_cols=45 Identities=29% Similarity=0.772 Sum_probs=37.6
Q ss_pred cccccccccccCc---EEcCCCCcccHhhHHHhcc-CCCCCCCCCcccc
Q 011050 203 FDCTLCLKLLYEP---ITTPCGHSFCRSCLFQSMD-RGNKCPLCRAVLF 247 (494)
Q Consensus 203 ~~C~iC~~~~~~P---v~~~cgh~fc~~Cl~~~~~-~~~~CP~Cr~~~~ 247 (494)
-+|.||++-|..- +.+||.|.|+..|+.+|.. ....||+||.+++
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCC
Confidence 6899999866432 4589999999999999987 5678999999874
No 177
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.62 E-value=6.6e-05 Score=67.62 Aligned_cols=82 Identities=12% Similarity=0.059 Sum_probs=70.4
Q ss_pred CCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhccccc---hHHHHHHHHHHHHHHHH
Q 011050 78 PGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNS---MKSHLLKANALILLERY 154 (494)
Q Consensus 78 p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~---~~a~~~~g~~~~~~~~~ 154 (494)
+..+.+++++|..+...|++ ++|+..++++++++|+. ..+++.+|.+|..+|++
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~-----------------------~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~ 88 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEY-----------------------AEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEH 88 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCH-----------------------HHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCH
Confidence 34567789999999999999 99999999999987753 56899999999999999
Q ss_pred HHHHHHHHccccCCCCCchhHHHHHHHH
Q 011050 155 DMARDAILSGLQVDPFSNPLQASLQNLE 182 (494)
Q Consensus 155 ~~A~~~~~~al~l~p~~~~~~~~~~~~~ 182 (494)
++|+..|.++++++|.+......+..+-
T Consensus 89 ~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 89 DKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 9999999999999999877655544443
No 178
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.59 E-value=3.9e-05 Score=54.98 Aligned_cols=44 Identities=27% Similarity=0.773 Sum_probs=30.5
Q ss_pred CCcccccccccccccCcEE-cCCCCcccHhhHHHhccC--CCCCCCC
Q 011050 199 RTDDFDCTLCLKLLYEPIT-TPCGHSFCRSCLFQSMDR--GNKCPLC 242 (494)
Q Consensus 199 ~~~~~~C~iC~~~~~~Pv~-~~cgh~fc~~Cl~~~~~~--~~~CP~C 242 (494)
....+.||+.+..|.+||. ..|||+|.+..|..++.. ...||..
T Consensus 8 ~~~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~ 54 (57)
T PF11789_consen 8 GTISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVA 54 (57)
T ss_dssp SB--SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCC
T ss_pred cEeccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCC
Confidence 3457899999999999987 599999999999999943 3459983
No 179
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.58 E-value=5.2e-05 Score=58.20 Aligned_cols=43 Identities=26% Similarity=0.671 Sum_probs=31.4
Q ss_pred ccccccccccC-cEEc-CCCCcccHhhHHHhccCC---CCCCCCCccc
Q 011050 204 DCTLCLKLLYE-PITT-PCGHSFCRSCLFQSMDRG---NKCPLCRAVL 246 (494)
Q Consensus 204 ~C~iC~~~~~~-Pv~~-~cgh~fc~~Cl~~~~~~~---~~CP~Cr~~~ 246 (494)
.|+.|.....+ |+.. .|+|.|+..||.+|+... ..||.||++.
T Consensus 34 ~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w 81 (85)
T PF12861_consen 34 CCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPW 81 (85)
T ss_pred CCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCee
Confidence 35555544434 4433 899999999999999842 4699999975
No 180
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.58 E-value=0.00011 Score=79.25 Aligned_cols=130 Identities=12% Similarity=0.056 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhcc-------CCCCCccccc--cCCCCCc
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKH-------RPPSASEYRP--LNGLDPT 117 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~~--~~~~~~~ 117 (494)
+..+--.|..|..--|...|..+|.+|.++|+.++.+....+..|....++-++ .+.+...-.. |-...+-
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY 571 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence 344555677776666777899999999999998886666665555554443111 1111110000 1111111
Q ss_pred ----hhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHH
Q 011050 118 ----THAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQA 176 (494)
Q Consensus 118 ----~~~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~ 176 (494)
..-..|+.+++-|++.+|++..+|..+|.+|-..|+|..|++.|.+|..++|.+.-.+-
T Consensus 572 yLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~f 634 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRF 634 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHH
Confidence 11177899999999999999999999999999999999999999999999998875443
No 181
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.57 E-value=5.8e-05 Score=58.16 Aligned_cols=66 Identities=21% Similarity=0.264 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHhcc---CC----CCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCch
Q 011050 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNI---KP----GDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTT 118 (494)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~---~p----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (494)
.+..+...|..++..|+|++|+.+|.+|+++ .+ .-..++.++|.+|..+|++
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~--------------------- 62 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDY--------------------- 62 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHH---------------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCH---------------------
Confidence 4677889999999999999999999999976 12 2257899999999999999
Q ss_pred hHHHHHHHHHHHhhcc
Q 011050 119 HAELALKDAEKLLNLQ 134 (494)
Q Consensus 119 ~~~~a~~~~~~al~l~ 134 (494)
++|+..+++++++.
T Consensus 63 --~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 63 --EEALEYYQKALDIF 76 (78)
T ss_dssp --HHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHhhh
Confidence 99999999998864
No 182
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.56 E-value=5.8e-05 Score=47.86 Aligned_cols=34 Identities=21% Similarity=0.285 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCC
Q 011050 138 MKSHLLKANALILLERYDMARDAILSGLQVDPFS 171 (494)
Q Consensus 138 ~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~ 171 (494)
+++++.+|.+|..+|++++|+.+|+++++++|+|
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4689999999999999999999999999999986
No 183
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.52 E-value=0.00076 Score=63.16 Aligned_cols=109 Identities=20% Similarity=0.235 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCc---ccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHH
Q 011050 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP---IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAEL 122 (494)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (494)
-+..|.++|...++.|+|.+|+..|.......|..+ .+...++.++++.++| ++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y-----------------------~~ 89 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEY-----------------------DL 89 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccH-----------------------HH
Confidence 368899999999999999999999999999988765 6777888999999999 99
Q ss_pred HHHHHHHHhhccccch---HHHHHHHHHHHH--------HHHHHHHHHHHHccccCCCCCchhHHH
Q 011050 123 ALKDAEKLLNLQSNSM---KSHLLKANALIL--------LERYDMARDAILSGLQVDPFSNPLQAS 177 (494)
Q Consensus 123 a~~~~~~al~l~p~~~---~a~~~~g~~~~~--------~~~~~~A~~~~~~al~l~p~~~~~~~~ 177 (494)
|+..+++-+.+.|+++ .++|.+|.++.. ..--.+|+..+...++.-|+..=+..+
T Consensus 90 A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA 155 (254)
T COG4105 90 ALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDA 155 (254)
T ss_pred HHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhH
Confidence 9999999999998765 478888888754 445567888999999999987744333
No 184
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.52 E-value=0.0003 Score=62.96 Aligned_cols=70 Identities=23% Similarity=0.371 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHH
Q 011050 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDA 127 (494)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 127 (494)
--|..+|..+.+.+.++.||...++||+++|.+-.++..||.+|-++..| ++|+.||
T Consensus 135 Ily~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~-----------------------eealeDy 191 (271)
T KOG4234|consen 135 ILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY-----------------------EEALEDY 191 (271)
T ss_pred HHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH-----------------------HHHHHHH
Confidence 34668899999999999999999999999999999999999999999999 9999999
Q ss_pred HHHhhccccchHH
Q 011050 128 EKLLNLQSNSMKS 140 (494)
Q Consensus 128 ~~al~l~p~~~~a 140 (494)
.+.++++|...+|
T Consensus 192 Kki~E~dPs~~ea 204 (271)
T KOG4234|consen 192 KKILESDPSRREA 204 (271)
T ss_pred HHHHHhCcchHHH
Confidence 9999999987443
No 185
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.52 E-value=0.00048 Score=70.85 Aligned_cols=108 Identities=13% Similarity=0.083 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccCh-hHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHH
Q 011050 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNR-SSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 124 (494)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 124 (494)
++...+.+|...+..|||++|.....++-+..+. +.+++.. |.+....|++ +.|.
T Consensus 83 ~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~-----------------------~~A~ 138 (398)
T PRK10747 83 RARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDE-----------------------ARAN 138 (398)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCH-----------------------HHHH
Confidence 3444555555555556666555444443333222 2333322 2333555555 5555
Q ss_pred HHHHHHhhccccchHHH-HHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHH
Q 011050 125 KDAEKLLNLQSNSMKSH-LLKANALILLERYDMARDAILSGLQVDPFSNPLQAS 177 (494)
Q Consensus 125 ~~~~~al~l~p~~~~a~-~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~ 177 (494)
..+.++.+.+|++..+. ...+..+...|++++|...+++..+.+|+++.+...
T Consensus 139 ~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~l 192 (398)
T PRK10747 139 QHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRL 192 (398)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 55555555555543222 223555555555555555555555555555544433
No 186
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.51 E-value=0.00075 Score=64.31 Aligned_cols=129 Identities=19% Similarity=0.172 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCc---ccccChhHHHHHHHhhhccCCCCCccccccCCCCC----chhH
Q 011050 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP---IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDP----TTHA 120 (494)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 120 (494)
......|..+++.++|++|+..|++.++..|+++ .+++.+|.+++.++.- -.+..+.+|. ++.+
T Consensus 70 ~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~---------~~~~~~~~~~~~rD~~~~ 140 (243)
T PRK10866 70 QVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDS---------ALQGFFGVDRSDRDPQHA 140 (243)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchh---------hhhhccCCCccccCHHHH
Confidence 4567889999999999999999999999999876 5677777776555420 0111222222 2335
Q ss_pred HHHHHHHHHHhhccccchHH-----------------HHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHh
Q 011050 121 ELALKDAEKLLNLQSNSMKS-----------------HLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLER 183 (494)
Q Consensus 121 ~~a~~~~~~al~l~p~~~~a-----------------~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~ 183 (494)
.+|+..++..++.-|++..+ -+..|.-|...|.|..|+..++.+++--|+.+...+++-.+.+
T Consensus 141 ~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ 220 (243)
T PRK10866 141 RAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMEN 220 (243)
T ss_pred HHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHH
Confidence 78999999999999876432 2345666888999999999999999999999988877766654
Q ss_pred hh
Q 011050 184 TT 185 (494)
Q Consensus 184 ~~ 185 (494)
.-
T Consensus 221 ay 222 (243)
T PRK10866 221 AY 222 (243)
T ss_pred HH
Confidence 43
No 187
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.48 E-value=0.001 Score=57.99 Aligned_cols=97 Identities=15% Similarity=0.117 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCC---cccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhH
Q 011050 44 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD---PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHA 120 (494)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (494)
...+...+......+..++..++...+.+.+.-.|+. ..+...+|.+++..|+|
T Consensus 8 ~~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~----------------------- 64 (145)
T PF09976_consen 8 AEQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDY----------------------- 64 (145)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCH-----------------------
Confidence 3456777888888889999999999999999999988 46677788999999999
Q ss_pred HHHHHHHHHHhhccccc---hHHHHHHHHHHHHHHHHHHHHHHHHc
Q 011050 121 ELALKDAEKLLNLQSNS---MKSHLLKANALILLERYDMARDAILS 163 (494)
Q Consensus 121 ~~a~~~~~~al~l~p~~---~~a~~~~g~~~~~~~~~~~A~~~~~~ 163 (494)
++|...++.++...|+. ..+.+++|.++...|+|++|+..+..
T Consensus 65 ~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~ 110 (145)
T PF09976_consen 65 DEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ 110 (145)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 99999999999987654 45889999999999999999999976
No 188
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.48 E-value=0.00072 Score=69.57 Aligned_cols=101 Identities=15% Similarity=0.114 Sum_probs=87.8
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHhccCCCCccccc-ChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHH
Q 011050 50 LVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLG-NRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAE 128 (494)
Q Consensus 50 ~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 128 (494)
+...+..+...|+++.|..+|.+|.+.+|++..+.. ..+..+...|++ ++|+..++
T Consensus 121 ~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~-----------------------~~Al~~l~ 177 (398)
T PRK10747 121 YLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNEN-----------------------HAARHGVD 177 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCH-----------------------HHHHHHHH
Confidence 455567779999999999999999999998764433 348889999999 99999999
Q ss_pred HHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCch
Q 011050 129 KLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNP 173 (494)
Q Consensus 129 ~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~ 173 (494)
++.+.+|+++.++..++.+|...|++++|+..+.+..+..+.+++
T Consensus 178 ~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~ 222 (398)
T PRK10747 178 KLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE 222 (398)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH
Confidence 999999999999999999999999999999888888777766544
No 189
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.00041 Score=66.32 Aligned_cols=96 Identities=23% Similarity=0.197 Sum_probs=83.8
Q ss_pred hcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhccccchH
Q 011050 60 ESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMK 139 (494)
Q Consensus 60 ~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~ 139 (494)
..+.++.+......+..+|+|..-|..+|.+|+.++++ ..|...|++|+++.|+++.
T Consensus 135 ~~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~-----------------------~~A~~AY~~A~rL~g~n~~ 191 (287)
T COG4235 135 EQEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRA-----------------------SDALLAYRNALRLAGDNPE 191 (287)
T ss_pred cccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcch-----------------------hHHHHHHHHHHHhCCCCHH
Confidence 34466778888888999999999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHccccCCCCCchhHHHH
Q 011050 140 SHLLKANALILLE---RYDMARDAILSGLQVDPFSNPLQASL 178 (494)
Q Consensus 140 a~~~~g~~~~~~~---~~~~A~~~~~~al~l~p~~~~~~~~~ 178 (494)
.+..+|.+++... .-.++...+++++++||+|..+...+
T Consensus 192 ~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lL 233 (287)
T COG4235 192 ILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLL 233 (287)
T ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHH
Confidence 9999999986543 34578999999999999998765544
No 190
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=3.8e-05 Score=81.79 Aligned_cols=48 Identities=44% Similarity=0.917 Sum_probs=43.3
Q ss_pred CcccccccccccccC-----cEEcCCCCcccHhhHHHhccCCCCCCCCCcccc
Q 011050 200 TDDFDCTLCLKLLYE-----PITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 247 (494)
Q Consensus 200 ~~~~~C~iC~~~~~~-----Pv~~~cgh~fc~~Cl~~~~~~~~~CP~Cr~~~~ 247 (494)
..+..|+||.+.+.. |..++|||.||..|+..|+.....||.||..+.
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~ 341 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLY 341 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhhh
Confidence 347789999999999 788999999999999999999999999999553
No 191
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=6.4e-05 Score=70.71 Aligned_cols=47 Identities=28% Similarity=0.643 Sum_probs=42.0
Q ss_pred cccccccccccccCcEEcCCCCcccHhhHHHhccCCCC-CCCCCcccc
Q 011050 201 DDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNK-CPLCRAVLF 247 (494)
Q Consensus 201 ~~~~C~iC~~~~~~Pv~~~cgh~fc~~Cl~~~~~~~~~-CP~Cr~~~~ 247 (494)
...+|+||+.....|+.++|+|-||.-||.+...++.. |++||.++.
T Consensus 6 ~~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pid 53 (324)
T KOG0824|consen 6 KKKECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPID 53 (324)
T ss_pred cCCcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCC
Confidence 45689999999999999999999999999998877665 999999874
No 192
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.44 E-value=0.0011 Score=61.65 Aligned_cols=112 Identities=19% Similarity=0.066 Sum_probs=91.2
Q ss_pred HHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHh
Q 011050 52 QKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLL 131 (494)
Q Consensus 52 ~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al 131 (494)
.+--..-.+|+--.||......++.-++|+.+|..+|..|+..|+| .+|.-=++..+
T Consensus 125 RKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f-----------------------~kA~fClEE~l 181 (289)
T KOG3060|consen 125 RKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDF-----------------------EKAAFCLEELL 181 (289)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHH-----------------------HHHHHHHHHHH
Confidence 3333444557777999999999999999999999999999999999 99999999999
Q ss_pred hccccchHHHHHHHHHHHHH---HHHHHHHHHHHccccCCCCCchhHHHHHHHHhhhh
Q 011050 132 NLQSNSMKSHLLKANALILL---ERYDMARDAILSGLQVDPFSNPLQASLQNLERTTA 186 (494)
Q Consensus 132 ~l~p~~~~a~~~~g~~~~~~---~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~ 186 (494)
=++|-++..+.++|.+++-. .++.-|.++|.++++++|.+......+-..-.++.
T Consensus 182 l~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la 239 (289)
T KOG3060|consen 182 LIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALA 239 (289)
T ss_pred HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHH
Confidence 99999999999999997654 56777999999999999977666555444434443
No 193
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.43 E-value=0.00074 Score=69.74 Aligned_cols=103 Identities=17% Similarity=0.202 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCc-ccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHH
Q 011050 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP-IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (494)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (494)
..+...|..+..+|+++.|..+|.++.+..|++. .+...++..++..|++ +.|+..
T Consensus 119 ~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~-----------------------~~Al~~ 175 (409)
T TIGR00540 119 LNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNEL-----------------------HAARHG 175 (409)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCH-----------------------HHHHHH
Confidence 4466788999999999999999999999998876 3555568999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCch
Q 011050 127 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNP 173 (494)
Q Consensus 127 ~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~ 173 (494)
+++.++..|+++.++..++.+|...|++++|.+.+.+..+....++.
T Consensus 176 l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~ 222 (409)
T TIGR00540 176 VDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDE 222 (409)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHH
Confidence 99999999999999999999999999999999999999987554433
No 194
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.42 E-value=0.00011 Score=49.83 Aligned_cols=43 Identities=23% Similarity=0.148 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHH
Q 011050 138 MKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQN 180 (494)
Q Consensus 138 ~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~ 180 (494)
+.+++.+|.+|..+|++++|++.|+++++.+|+|..++..+..
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 4678999999999999999999999999999999998877653
No 195
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.00041 Score=68.40 Aligned_cols=105 Identities=17% Similarity=0.055 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHH
Q 011050 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDA 127 (494)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 127 (494)
...-.-|..+-.+|++++--..-...+..+.....-|+--+...+.-++| ..|+...
T Consensus 267 ~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~-----------------------~rAL~~~ 323 (564)
T KOG1174|consen 267 EAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKF-----------------------ERALNFV 323 (564)
T ss_pred hhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhH-----------------------HHHHHHH
Confidence 33344455555666666544444444444433333344444445555666 6666666
Q ss_pred HHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhH
Q 011050 128 EKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQ 175 (494)
Q Consensus 128 ~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~ 175 (494)
.|+|+.+|.+..+|...|.++..+|+.++|+-+|+.|..+.|..-++.
T Consensus 324 eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y 371 (564)
T KOG1174|consen 324 EKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIY 371 (564)
T ss_pred HHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHH
Confidence 777777777777777777777777777777777777766666555443
No 196
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.40 E-value=0.00057 Score=60.54 Aligned_cols=104 Identities=24% Similarity=0.266 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhc-cCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHH
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANN-IKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~-~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (494)
.......|+.+...|++.+|..+|.+++. +--.++..+.++|++.+.++++ .+|..
T Consensus 89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~-----------------------A~a~~ 145 (251)
T COG4700 89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEF-----------------------AAAQQ 145 (251)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccH-----------------------HHHHH
Confidence 34556789999999999999999999985 4667889999999999999999 99999
Q ss_pred HHHHHhhcccc--chHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCch
Q 011050 126 DAEKLLNLQSN--SMKSHLLKANALILLERYDMARDAILSGLQVDPFSNP 173 (494)
Q Consensus 126 ~~~~al~l~p~--~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~ 173 (494)
.+++..+.+|. .+..+...|.+|..+|++++|...|+.++.-.|+...
T Consensus 146 tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~a 195 (251)
T COG4700 146 TLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQA 195 (251)
T ss_pred HHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHH
Confidence 99999999984 5788999999999999999999999999998887653
No 197
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.40 E-value=0.00056 Score=65.59 Aligned_cols=129 Identities=13% Similarity=0.104 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCC-------ccccc------
Q 011050 44 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSA-------SEYRP------ 110 (494)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~------ 110 (494)
..+..++.+.|.+|+..|-++.|-..|....+..--...++..+..+|-...+|.|+-..+. ..|+.
T Consensus 104 ~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfy 183 (389)
T COG2956 104 EQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFY 183 (389)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHH
Confidence 34466677777777777777777777776665444444444445555544444422111000 00000
Q ss_pred ---cCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCc
Q 011050 111 ---LNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSN 172 (494)
Q Consensus 111 ---~~~~~~~~~~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~ 172 (494)
.-+.-..++.+.|.....+|++-||+.+.|-..+|.++...|+|++|++.++.+++-||+.-
T Consensus 184 CELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl 248 (389)
T COG2956 184 CELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYL 248 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHH
Confidence 00001222237788888999999999999999999999999999999999999998888753
No 198
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.00023 Score=66.17 Aligned_cols=56 Identities=27% Similarity=0.553 Sum_probs=44.8
Q ss_pred ccCCCCCCCcccccccccccccCcEEc-CCCCcccHhhHHHhcc--CCCCCCCCCcccc
Q 011050 192 RIHGTPERTDDFDCTLCLKLLYEPITT-PCGHSFCRSCLFQSMD--RGNKCPLCRAVLF 247 (494)
Q Consensus 192 ~~~~~~~~~~~~~C~iC~~~~~~Pv~~-~cgh~fc~~Cl~~~~~--~~~~CP~Cr~~~~ 247 (494)
............+|++|.+.-..|.+. +|||.||..|+..... ....||.|..+..
T Consensus 229 p~~sss~~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 229 PKFSSSTGTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred CCcccccccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 334445566788999999999999776 6999999999987654 4568999998763
No 199
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.00023 Score=67.72 Aligned_cols=156 Identities=14% Similarity=0.137 Sum_probs=115.4
Q ss_pred ccccccccCCCCceeeccCCCccceeccCCCCCchhh-----HHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCc
Q 011050 7 SQMSAEATSSGFPLVGIDDVDDYIWANEGEGSLPWDR-----YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP 81 (494)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~ 81 (494)
.|..-.+.+.+..+..+.+++.|+.+.+.+.. ... ......-+.+|......|++..|...|..++...|.+.
T Consensus 91 aqfgiqsIPtV~af~dGqpVdgF~G~qPesql--r~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~ 168 (304)
T COG3118 91 AQFGVQSIPTVYAFKDGQPVDGFQGAQPESQL--RQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENS 168 (304)
T ss_pred HHhCcCcCCeEEEeeCCcCccccCCCCcHHHH--HHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccc
Confidence 34455567777788889999999988766431 111 11234567788899999999999999999999999999
Q ss_pred ccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHH-------------------HHHHHHHhhccccchHHHH
Q 011050 82 IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA-------------------LKDAEKLLNLQSNSMKSHL 142 (494)
Q Consensus 82 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a-------------------~~~~~~al~l~p~~~~a~~ 142 (494)
.+...+|.||...|+.. +++-+...-|.+..+++ ..++...+..||++..+-+
T Consensus 169 ~~~~~la~~~l~~g~~e--------~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~ 240 (304)
T COG3118 169 EAKLLLAECLLAAGDVE--------AAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAAL 240 (304)
T ss_pred hHHHHHHHHHHHcCChH--------HHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHH
Confidence 99999999999999861 22222222222211111 1344455567899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHccccCCCCCc
Q 011050 143 LKANALILLERYDMARDAILSGLQVDPFSN 172 (494)
Q Consensus 143 ~~g~~~~~~~~~~~A~~~~~~al~l~p~~~ 172 (494)
.+|..|...|++++|.+.+...++.|-.+.
T Consensus 241 ~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~ 270 (304)
T COG3118 241 ALADQLHLVGRNEAALEHLLALLRRDRGFE 270 (304)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 999999999999999999999999877543
No 200
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.37 E-value=0.00097 Score=61.78 Aligned_cols=127 Identities=18% Similarity=0.181 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCc---ccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHH
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP---IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 123 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 123 (494)
....+..|..+++.|+|+.|+..|.+.+...|+++ .+++.+|.+++....-.- ++. .-++.+.+|
T Consensus 42 ~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~-----------~~~-~D~~~~~~A 109 (203)
T PF13525_consen 42 PQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGIL-----------RSD-RDQTSTRKA 109 (203)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH------------TT----HHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccch-----------hcc-cChHHHHHH
Confidence 35678899999999999999999999999999876 588888988887654300 001 112444789
Q ss_pred HHHHHHHhhccccchHH-----------------HHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHhhh
Q 011050 124 LKDAEKLLNLQSNSMKS-----------------HLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTT 185 (494)
Q Consensus 124 ~~~~~~al~l~p~~~~a-----------------~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~ 185 (494)
+..++..++.-|++..+ -+..|.-|...|.|..|+..++.+++--|+.+...+++..+.+.-
T Consensus 110 ~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y 188 (203)
T PF13525_consen 110 IEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAY 188 (203)
T ss_dssp HHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHH
Confidence 99999999999986543 345677888899999999999999999999998877776665543
No 201
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.37 E-value=0.0004 Score=66.58 Aligned_cols=106 Identities=18% Similarity=-0.002 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHH
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (494)
...+.-....|.+-.....|+..|.+.++.-|.+...+...|.++-.++++ ++|++.
T Consensus 256 ~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~-----------------------~~a~~l 312 (478)
T KOG1129|consen 256 PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQ-----------------------EDALQL 312 (478)
T ss_pred hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhH-----------------------HHHHHH
Confidence 444555566666667777777777777777777777777777777777777 777777
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhH
Q 011050 127 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQ 175 (494)
Q Consensus 127 ~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~ 175 (494)
|+.+++++|.++++.--.|.-|+..++.+-|+.+|++.|++.-.+++.-
T Consensus 313 Yk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf 361 (478)
T KOG1129|consen 313 YKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELF 361 (478)
T ss_pred HHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHH
Confidence 7777777777777777777777777777777777777777766666543
No 202
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.33 E-value=0.00047 Score=72.50 Aligned_cols=102 Identities=16% Similarity=0.144 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHH
Q 011050 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDA 127 (494)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 127 (494)
..|+..|-.+.+-++++.|+.+|.+++.++|++..+|.|++.+|+++++- .+|....
T Consensus 520 ~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k-----------------------~ra~~~l 576 (777)
T KOG1128|consen 520 GTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKK-----------------------KRAFRKL 576 (777)
T ss_pred hHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhh-----------------------HHHHHHH
Confidence 45788999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCc
Q 011050 128 EKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSN 172 (494)
Q Consensus 128 ~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~ 172 (494)
.+|++.+-.+++.|-+...+....|.+++|+.+|.+.+.+.-...
T Consensus 577 ~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~ 621 (777)
T KOG1128|consen 577 KEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYK 621 (777)
T ss_pred HHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcc
Confidence 999999988899988888899999999999999999988755433
No 203
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.30 E-value=0.0003 Score=73.27 Aligned_cols=100 Identities=13% Similarity=0.053 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHhcc--------CCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCc
Q 011050 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNI--------KPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPT 117 (494)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (494)
........|..++.+|+|++|+..+.+|++. .|.-.....+.|..|..+++|
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~-------------------- 257 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKY-------------------- 257 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccH--------------------
Confidence 3455566899999999999999999999998 444445555689999999999
Q ss_pred hhHHHHHHHHHHHhhc--------cccchHHHHHHHHHHHHHHHHHHHHHHHHccccCC
Q 011050 118 THAELALKDAEKLLNL--------QSNSMKSHLLKANALILLERYDMARDAILSGLQVD 168 (494)
Q Consensus 118 ~~~~~a~~~~~~al~l--------~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~ 168 (494)
.+|+..|++|+.+ +|.-+..+.++|.+|+..|+|++|..++++|+.+-
T Consensus 258 ---~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~ 313 (508)
T KOG1840|consen 258 ---DEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIY 313 (508)
T ss_pred ---HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence 9999999999975 46667789999999999999999999999998863
No 204
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.28 E-value=0.0013 Score=53.70 Aligned_cols=98 Identities=17% Similarity=0.235 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCC------------CcccccChhHHHHHHHhhhccCCCCCccccccCC
Q 011050 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPG------------DPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNG 113 (494)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (494)
.+...+..|...+..|-|++|..-|.+|++.... |+-+|..++.++..+|+|
T Consensus 8 ~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry---------------- 71 (144)
T PF12968_consen 8 MAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRY---------------- 71 (144)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-H----------------
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccH----------------
Confidence 3555678899999999999999999999987432 236778889999999999
Q ss_pred CCCchhHHHHHHHHHHHhhc-------cc----cchHHHHHHHHHHHHHHHHHHHHHHHHcccc
Q 011050 114 LDPTTHAELALKDAEKLLNL-------QS----NSMKSHLLKANALILLERYDMARDAILSGLQ 166 (494)
Q Consensus 114 ~~~~~~~~~a~~~~~~al~l-------~p----~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~ 166 (494)
++++..+++++.. +. .|..+.|.+|.++..+|+.++|+..|+.+-+
T Consensus 72 -------~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 72 -------DECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp -------HHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 8888888888854 32 4677899999999999999999999987643
No 205
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.28 E-value=0.00059 Score=75.35 Aligned_cols=99 Identities=9% Similarity=-0.024 Sum_probs=77.7
Q ss_pred HHHHHHHHHHhcChHHHHHH-----------------HHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccC
Q 011050 50 LVQKGNRAFRESNFEEAISN-----------------YSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLN 112 (494)
Q Consensus 50 ~~~~g~~~~~~~~~~~Ai~~-----------------y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 112 (494)
+.-.|-.++.++++.+|... |...+...+.+..+++.+|.||-++|++
T Consensus 68 yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~--------------- 132 (906)
T PRK14720 68 LYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNEN--------------- 132 (906)
T ss_pred HHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCCh---------------
Confidence 44455555555555554444 4444444444448999999999999999
Q ss_pred CCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCc
Q 011050 113 GLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSN 172 (494)
Q Consensus 113 ~~~~~~~~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~ 172 (494)
++|...+++++++||+++.++.++|..|... ++++|+..+.+|++..=+++
T Consensus 133 --------~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~k 183 (906)
T PRK14720 133 --------KKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKK 183 (906)
T ss_pred --------HHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999988 99999999999988744433
No 206
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.27 E-value=0.00032 Score=44.46 Aligned_cols=34 Identities=29% Similarity=0.509 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCC
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD 80 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~ 80 (494)
+..+..+|..++..|+|++|+.+|++|++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 4678899999999999999999999999999974
No 207
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.24 E-value=0.00066 Score=65.74 Aligned_cols=124 Identities=16% Similarity=0.155 Sum_probs=90.0
Q ss_pred HHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccc------cC--------------
Q 011050 53 KGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRP------LN-------------- 112 (494)
Q Consensus 53 ~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~------~~-------------- 112 (494)
-|..+|+-|||++|+..|+-+.+.+.-++.++.|+|-|++.+|.|.++.+-+-+.-.. +|
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~ 142 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILT 142 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHH
Confidence 4778899999999999999999988888999999999999999996655411111100 00
Q ss_pred --------CCC---------CchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhH
Q 011050 113 --------GLD---------PTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQ 175 (494)
Q Consensus 113 --------~~~---------~~~~~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~ 175 (494)
..| .+.+.++|++.|.+++.-+|++...-..+|.||+++.-|+.+-+.+.-.|+--|+.+-+.
T Consensus 143 fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~ 222 (557)
T KOG3785|consen 143 FHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAK 222 (557)
T ss_pred HHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHH
Confidence 001 223337777778887777777776667777788888888877777777777777776554
Q ss_pred H
Q 011050 176 A 176 (494)
Q Consensus 176 ~ 176 (494)
.
T Consensus 223 N 223 (557)
T KOG3785|consen 223 N 223 (557)
T ss_pred H
Confidence 4
No 208
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.23 E-value=6.4e-05 Score=47.89 Aligned_cols=29 Identities=17% Similarity=0.449 Sum_probs=27.8
Q ss_pred HHHHHhccCCCCcccccChhHHHHHHHhh
Q 011050 69 NYSRANNIKPGDPIVLGNRSSAYIRISQF 97 (494)
Q Consensus 69 ~y~~al~~~p~~~~~~~~~a~~~~~~~~~ 97 (494)
+|++||+++|+++.+|.++|.+|...|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~ 29 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDY 29 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCH
Confidence 48999999999999999999999999999
No 209
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.23 E-value=0.00044 Score=48.71 Aligned_cols=49 Identities=18% Similarity=0.132 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHhhhhh
Q 011050 139 KSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTAS 187 (494)
Q Consensus 139 ~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~ 187 (494)
+.+|.+|.+++.+|+|++|+...+.+|+++|+|..+....+.+++++..
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~k 50 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQK 50 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhc
Confidence 3578999999999999999999999999999999999988888887754
No 210
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.22 E-value=0.0005 Score=64.33 Aligned_cols=68 Identities=26% Similarity=0.569 Sum_probs=48.5
Q ss_pred CcccccccccccccCcEEc-CCCCcccHhhHHHhcc-CCCCCCCCCcccccCCCCCcccccHHHHHHHhCh
Q 011050 200 TDDFDCTLCLKLLYEPITT-PCGHSFCRSCLFQSMD-RGNKCPLCRAVLFITPRTCAVSVTLNSIIQKNFP 268 (494)
Q Consensus 200 ~~~~~C~iC~~~~~~Pv~~-~cgh~fc~~Cl~~~~~-~~~~CP~Cr~~~~~~~~~~~~~~~l~~~~~~~~p 268 (494)
.-.+.|++|..++.+|+.+ -|||+||..||...+- ..+.||.|...=.. -+.+.++...+.-+++++.
T Consensus 272 ~i~LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvl-ld~l~pD~dk~~EvE~~lk 341 (427)
T COG5222 272 NISLKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVL-LDGLTPDIDKKLEVEKALK 341 (427)
T ss_pred CccccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccch-hhccCccHHHHHHHHHHHH
Confidence 3348999999999999987 7999999999987765 45689999763111 1345555555555555443
No 211
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.18 E-value=0.00064 Score=42.90 Aligned_cols=34 Identities=24% Similarity=0.414 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCC
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD 80 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~ 80 (494)
+..+...|..++..|+|++|+.+|.++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4567889999999999999999999999999985
No 212
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.17 E-value=0.0031 Score=54.93 Aligned_cols=96 Identities=24% Similarity=0.154 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCc----------------------ccccChhHHHHHHHhhhccCCCC
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP----------------------IVLGNRSSAYIRISQFLKHRPPS 104 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~----------------------~~~~~~a~~~~~~~~~~~~~~~~ 104 (494)
...+...|......++.+.++..+.+|+.+-..+. .++..++..+...|++
T Consensus 6 F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~------- 78 (146)
T PF03704_consen 6 FEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDY------- 78 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-H-------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCH-------
Confidence 34556678888888999999999999999843321 3444455666777788
Q ss_pred CccccccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccc
Q 011050 105 ASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGL 165 (494)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al 165 (494)
.+|+..+++++..+|.+-.+|..+..+|..+|++.+|+..|.++-
T Consensus 79 ----------------~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 79 ----------------EEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp ----------------HHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998764
No 213
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.16 E-value=0.00056 Score=65.61 Aligned_cols=100 Identities=21% Similarity=0.062 Sum_probs=91.4
Q ss_pred HHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHH
Q 011050 51 VQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKL 130 (494)
Q Consensus 51 ~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a 130 (494)
.+.|..|++-|.+.+|...++.+++..|- ++-|.-++.+|.++.+. ..|+..+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~-~dTfllLskvY~ridQP-----------------------~~AL~~~~~g 282 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKVYQRIDQP-----------------------ERALLVIGEG 282 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCc-hhHHHHHHHHHHHhccH-----------------------HHHHHHHhhh
Confidence 46899999999999999999999998774 56677789999999999 9999999999
Q ss_pred hhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchh
Q 011050 131 LNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPL 174 (494)
Q Consensus 131 l~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~ 174 (494)
++..|.++..+.-.|.++..++++++|.+.|+.+++++|.|-++
T Consensus 283 ld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEa 326 (478)
T KOG1129|consen 283 LDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEA 326 (478)
T ss_pred hhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCcccee
Confidence 99999999999999999999999999999999999999987654
No 214
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.15 E-value=0.00026 Score=72.04 Aligned_cols=49 Identities=39% Similarity=1.060 Sum_probs=44.6
Q ss_pred CCcccccccccccccCcEE-cCCCCcccHhhHHHhccCCCCCCCCCcccc
Q 011050 199 RTDDFDCTLCLKLLYEPIT-TPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 247 (494)
Q Consensus 199 ~~~~~~C~iC~~~~~~Pv~-~~cgh~fc~~Cl~~~~~~~~~CP~Cr~~~~ 247 (494)
...++.|++|..++.+|+. +.|||.||..|+..|......||.|+..+.
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~ 67 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELT 67 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhccCcCCcccccccc
Confidence 5677999999999999998 599999999999999998888999998764
No 215
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.13 E-value=0.0012 Score=67.73 Aligned_cols=100 Identities=23% Similarity=0.149 Sum_probs=89.9
Q ss_pred HhcChHHHHHHHHHHhccCCCCc-ccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhccccc
Q 011050 59 RESNFEEAISNYSRANNIKPGDP-IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNS 137 (494)
Q Consensus 59 ~~~~~~~Ai~~y~~al~~~p~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~ 137 (494)
-.|+...|+.+...|+...|... ....++|+..++.+-. ..|-..+.+++.++...
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~-----------------------~da~~~l~q~l~~~~se 675 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLH-----------------------LDATKLLLQALAINSSE 675 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhh-----------------------ccHHHHHHHHHhhcccC
Confidence 46888999999999999999754 5677899998888866 78889999999999888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHH
Q 011050 138 MKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (494)
Q Consensus 138 ~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 181 (494)
+-.++..|.+|..+++.+.|+++|+.|++++|++..+++.+..+
T Consensus 676 pl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 676 PLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred chHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence 99999999999999999999999999999999999998887766
No 216
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.12 E-value=0.00073 Score=65.03 Aligned_cols=59 Identities=12% Similarity=-0.016 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhhccccc---hHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHH
Q 011050 121 ELALKDAEKLLNLQSNS---MKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQ 179 (494)
Q Consensus 121 ~~a~~~~~~al~l~p~~---~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~ 179 (494)
++|+..+++.++..|++ +.++|++|.+|+..|++++|+..|.++++..|+++....++-
T Consensus 160 ~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 160 DDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 99999999999999988 579999999999999999999999999999999876555543
No 217
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.12 E-value=0.00035 Score=47.34 Aligned_cols=42 Identities=19% Similarity=0.117 Sum_probs=39.0
Q ss_pred ccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHH
Q 011050 82 IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKAN 146 (494)
Q Consensus 82 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~a~~~~g~ 146 (494)
.++..+|.+|...|++ ++|++.++++++.+|+++.+++.+|.
T Consensus 2 ~~~~~la~~~~~~G~~-----------------------~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQP-----------------------DEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCH-----------------------HHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 4677899999999999 99999999999999999999998875
No 218
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.11 E-value=0.00029 Score=55.21 Aligned_cols=61 Identities=21% Similarity=0.333 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHH
Q 011050 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (494)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (494)
+...+...|..+|+.|+|++|+..+++ ...+|.+...++..|.|++++|+| ++|++
T Consensus 24 ~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y-----------------------~eAi~ 79 (84)
T PF12895_consen 24 NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKY-----------------------EEAIK 79 (84)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-H-----------------------HHHHH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCH-----------------------HHHHH
Confidence 345667799999999999999999999 888998888888899999999999 99999
Q ss_pred HHHHH
Q 011050 126 DAEKL 130 (494)
Q Consensus 126 ~~~~a 130 (494)
.+.++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 88875
No 219
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.11 E-value=0.0028 Score=63.23 Aligned_cols=105 Identities=17% Similarity=0.079 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHH
Q 011050 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (494)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (494)
.+.-+.+.++.|-...+..+||..|.++..+-|+++.+++.+|..|-+-|+- .+|..
T Consensus 557 n~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdk-----------------------sqafq 613 (840)
T KOG2003|consen 557 NAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDK-----------------------SQAFQ 613 (840)
T ss_pred hHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccch-----------------------hhhhh
Confidence 3455666677777777777777777777777777777777777777666554 34444
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCch
Q 011050 126 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNP 173 (494)
Q Consensus 126 ~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~ 173 (494)
-+-...+.-|.+.+..-|+|.-|....-+++|+.+|++|--+.|+...
T Consensus 614 ~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~k 661 (840)
T KOG2003|consen 614 CHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSK 661 (840)
T ss_pred hhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHH
Confidence 344444444444444444444444444444444444444444444433
No 220
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=97.11 E-value=0.0023 Score=52.07 Aligned_cols=103 Identities=17% Similarity=0.156 Sum_probs=85.5
Q ss_pred HHHHHHHhcChHHHHHHHHHHhccCCCCcc---cccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHH
Q 011050 53 KGNRAFRESNFEEAISNYSRANNIKPGDPI---VLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEK 129 (494)
Q Consensus 53 ~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 129 (494)
+|..+|.+||+-+|+......+...+++.. ++..-|..++++..- +.+.|..+.++ -.+++-+.+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~---ten~d~k~~yL---------l~sve~~s~ 69 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKK---TENPDVKFRYL---------LGSVECFSR 69 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHh---ccCchHHHHHH---------HHhHHHHHH
Confidence 578899999999999999999999988774 445556666666654 23555566665 788999999
Q ss_pred HhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccC
Q 011050 130 LLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQV 167 (494)
Q Consensus 130 al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 167 (494)
+..+.|..+..+|.+|.-+.....|++++.-.+++|.+
T Consensus 70 a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 70 AVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 99999999999999999998899999999998888875
No 221
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.10 E-value=0.00083 Score=70.07 Aligned_cols=104 Identities=20% Similarity=0.181 Sum_probs=87.0
Q ss_pred hhHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccC--------CCCcccccChhHHHHHHHhhhccCCCCCccccccCC
Q 011050 42 DRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIK--------PGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNG 113 (494)
Q Consensus 42 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~--------p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (494)
+-+.-+..+.+.|..|.+.|+|++|..++.+|+++- |.-+..+.+.+..+..++++
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~---------------- 341 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEY---------------- 341 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcch----------------
Confidence 334557788899999999999999999999999872 23347788889999999999
Q ss_pred CCCchhHHHHHHHHHHHhhcc--------ccchHHHHHHHHHHHHHHHHHHHHHHHHccccCC
Q 011050 114 LDPTTHAELALKDAEKLLNLQ--------SNSMKSHLLKANALILLERYDMARDAILSGLQVD 168 (494)
Q Consensus 114 ~~~~~~~~~a~~~~~~al~l~--------p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~ 168 (494)
++|+..+.+++++- +.-++.+-++|..|..+|+|.+|...|++|+++.
T Consensus 342 -------Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~ 397 (508)
T KOG1840|consen 342 -------EEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL 397 (508)
T ss_pred -------hHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 88988888887652 3446678899999999999999999999999875
No 222
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.05 E-value=0.0027 Score=66.17 Aligned_cols=107 Identities=13% Similarity=-0.026 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHH
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (494)
...+..+|..+...|+-++|..+-..++..++.++.+|.-+|..+-.-++| ++|++-
T Consensus 41 geslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y-----------------------~eaiKc 97 (700)
T KOG1156|consen 41 GESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKY-----------------------DEAIKC 97 (700)
T ss_pred chhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhH-----------------------HHHHHH
Confidence 344555666666666666666666666666666666666666666666666 666666
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHH
Q 011050 127 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQA 176 (494)
Q Consensus 127 ~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~ 176 (494)
|+.|+.++|+|.+.++.++....++|+|+-..+.-.+.|++.|.+...+-
T Consensus 98 y~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~ 147 (700)
T KOG1156|consen 98 YRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWI 147 (700)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHH
Confidence 66666666666666666666666666666666666666666666554443
No 223
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.99 E-value=0.00035 Score=69.25 Aligned_cols=49 Identities=35% Similarity=0.689 Sum_probs=40.4
Q ss_pred CCCCCcccccccccccccCcE----EcCCCCcccHhhHHHhccCCCCCCCCCccc
Q 011050 196 TPERTDDFDCTLCLKLLYEPI----TTPCGHSFCRSCLFQSMDRGNKCPLCRAVL 246 (494)
Q Consensus 196 ~~~~~~~~~C~iC~~~~~~Pv----~~~cgh~fc~~Cl~~~~~~~~~CP~Cr~~~ 246 (494)
.....+.-+||+|++-+..-+ ++.|.|+|+.+|+..|+. .+||+||.-.
T Consensus 169 ~~~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~--~scpvcR~~q 221 (493)
T KOG0804|consen 169 PTGLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD--SSCPVCRYCQ 221 (493)
T ss_pred CCCcccCCCcchhHhhcCccccceeeeecccccchHHHhhccc--CcChhhhhhc
Confidence 344556779999999998775 579999999999999986 4799999753
No 224
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=96.98 E-value=0.0033 Score=66.18 Aligned_cols=54 Identities=19% Similarity=0.126 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchh
Q 011050 121 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPL 174 (494)
Q Consensus 121 ~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~ 174 (494)
++|+...++||+..|+.++.|+.+|.+|-..|++.+|.+.++.|-.+|+.+.-+
T Consensus 211 ~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyi 264 (517)
T PF12569_consen 211 EKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYI 264 (517)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHH
Confidence 889999999999999999999999999999999999999999999999987754
No 225
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=96.93 E-value=0.0069 Score=60.13 Aligned_cols=96 Identities=19% Similarity=0.352 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCC--------Cc----------ccccChhHHHHHHHhhhccCCCCCcc
Q 011050 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPG--------DP----------IVLGNRSSAYIRISQFLKHRPPSASE 107 (494)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~--------~~----------~~~~~~a~~~~~~~~~~~~~~~~~~~ 107 (494)
-....+..|...|++++|..|+..|..||++..+ .+ -+-..+..||.++++.
T Consensus 175 wl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkp---------- 244 (569)
T PF15015_consen 175 WLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKP---------- 244 (569)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCC----------
Confidence 3455566788889999999999999999887332 22 2234678899999999
Q ss_pred ccccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 011050 108 YRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSG 164 (494)
Q Consensus 108 ~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~a 164 (494)
+.|+....+.|-++|.++.-|++.|.++..+.+|.+|...+.-|
T Consensus 245 -------------dlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 245 -------------DLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred -------------chHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998776655
No 226
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.92 E-value=0.0014 Score=59.57 Aligned_cols=51 Identities=16% Similarity=0.101 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhh
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQF 97 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~ 97 (494)
+..+.-.|.-+...|+|+.|...|+..+++||.+-.++.|||.+++..|+|
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~ 149 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRY 149 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCch
Confidence 445556788888999999999999999999999999999999998888887
No 227
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.86 E-value=0.00052 Score=43.43 Aligned_cols=33 Identities=15% Similarity=0.162 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccccCCCCC
Q 011050 139 KSHLLKANALILLERYDMARDAILSGLQVDPFS 171 (494)
Q Consensus 139 ~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~ 171 (494)
++|+.+|.+|..+|++++|++.|+++++++|+|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 689999999999999999999999999999953
No 228
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.85 E-value=0.0017 Score=69.34 Aligned_cols=46 Identities=35% Similarity=0.702 Sum_probs=37.9
Q ss_pred CCCcccccccccccccCcE-EcCCCCcccHhhHHHhccCCCCCCCCCccc
Q 011050 198 ERTDDFDCTLCLKLLYEPI-TTPCGHSFCRSCLFQSMDRGNKCPLCRAVL 246 (494)
Q Consensus 198 ~~~~~~~C~iC~~~~~~Pv-~~~cgh~fc~~Cl~~~~~~~~~CP~Cr~~~ 246 (494)
...+.-.|..|.-.+.-|+ .+.|||+|+.+|++ +....||.|+..+
T Consensus 836 ~i~q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e---~~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 836 QIFQVSKCSACEGTLDLPFVHFLCGHSYHQHCLE---DKEDKCPKCLPEL 882 (933)
T ss_pred ceeeeeeecccCCccccceeeeecccHHHHHhhc---cCcccCCccchhh
Confidence 3445578999999999995 58999999999998 4556899998754
No 229
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.85 E-value=0.0014 Score=54.77 Aligned_cols=52 Identities=21% Similarity=0.094 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCc
Q 011050 121 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSN 172 (494)
Q Consensus 121 ~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~ 172 (494)
+.|++.+.+++.+.|..+.+|.+++++|...|+.++|++++++|+.+.....
T Consensus 60 d~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~t 111 (175)
T KOG4555|consen 60 DGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQT 111 (175)
T ss_pred HHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccc
Confidence 9999999999999999999999999999999999999999999999876543
No 230
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.81 E-value=0.0041 Score=53.32 Aligned_cols=84 Identities=23% Similarity=0.298 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCc---ccccChhHHHHHHHhhhccCCCCCccccccCCCC-CchhHHHH
Q 011050 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP---IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLD-PTTHAELA 123 (494)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a 123 (494)
.+.+..|..+|+.++|..|+..|.+-++++|+++ .+++.+|.+++....- .++.++..| -++.+..|
T Consensus 48 qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~---------~~~~~~~~drD~~~~~~A 118 (142)
T PF13512_consen 48 QAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEG---------SLQSFFRSDRDPTPARQA 118 (142)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhh---------HHhhhcccccCcHHHHHH
Confidence 5667889999999999999999999999999876 6788889998887651 011111111 23445899
Q ss_pred HHHHHHHhhccccchHH
Q 011050 124 LKDAEKLLNLQSNSMKS 140 (494)
Q Consensus 124 ~~~~~~al~l~p~~~~a 140 (494)
+.+++.+++.-|++..+
T Consensus 119 ~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 119 FRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHHHCcCChhH
Confidence 99999999999988554
No 231
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.75 E-value=0.0034 Score=52.69 Aligned_cols=72 Identities=21% Similarity=0.099 Sum_probs=62.0
Q ss_pred ccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhcccc---chHHHHHHHHHHHHHHHHHHHH
Q 011050 82 IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSN---SMKSHLLKANALILLERYDMAR 158 (494)
Q Consensus 82 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~---~~~a~~~~g~~~~~~~~~~~A~ 158 (494)
.+++++|.++-.+|+. .+|+..|++++....+ -..++..+|.+|..+|++++|+
T Consensus 2 ~~~~~~A~a~d~~G~~-----------------------~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~ 58 (120)
T PF12688_consen 2 RALYELAWAHDSLGRE-----------------------EEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEAL 58 (120)
T ss_pred chHHHHHHHHHhcCCH-----------------------HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHH
Confidence 4677889999999999 9999999999997543 3679999999999999999999
Q ss_pred HHHHccccCCCC---CchhHH
Q 011050 159 DAILSGLQVDPF---SNPLQA 176 (494)
Q Consensus 159 ~~~~~al~l~p~---~~~~~~ 176 (494)
..+++++.-.|+ +..++.
T Consensus 59 ~~L~~~~~~~p~~~~~~~l~~ 79 (120)
T PF12688_consen 59 ALLEEALEEFPDDELNAALRV 79 (120)
T ss_pred HHHHHHHHHCCCccccHHHHH
Confidence 999999998887 555443
No 232
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=96.75 E-value=0.001 Score=58.85 Aligned_cols=65 Identities=25% Similarity=0.263 Sum_probs=47.0
Q ss_pred cChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhccccc
Q 011050 61 SNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNS 137 (494)
Q Consensus 61 ~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~ 137 (494)
.-+++|+..|.+||.++|+.+.+++++|++|...+.+. +.....- .+-++|...+.+|.+.+|++
T Consensus 49 ~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~---~d~~~A~---------~~F~kA~~~FqkAv~~~P~n 113 (186)
T PF06552_consen 49 KMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT---PDTAEAE---------EYFEKATEYFQKAVDEDPNN 113 (186)
T ss_dssp HHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH------HHHHH---------HHHHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc---CChHHHH---------HHHHHHHHHHHHHHhcCCCc
Confidence 45678999999999999999999999999999999861 1110111 11278888999999999988
No 233
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.72 E-value=0.00088 Score=66.10 Aligned_cols=95 Identities=22% Similarity=0.203 Sum_probs=77.9
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHhccCCC------CcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHH
Q 011050 50 LVQKGNRAFRESNFEEAISNYSRANNIKPG------DPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 123 (494)
Q Consensus 50 ~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 123 (494)
+=..||.||--|+|+.||.+-..-+.+.-. .-.+++|+|+|++-+|++ +.|
T Consensus 198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~f-----------------------e~A 254 (639)
T KOG1130|consen 198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNF-----------------------ELA 254 (639)
T ss_pred hcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhccc-----------------------HhH
Confidence 445677888999999999988877776432 237899999999999999 999
Q ss_pred HHHHHHHhhcc------ccchHHHHHHHHHHHHHHHHHHHHHHHHccccC
Q 011050 124 LKDAEKLLNLQ------SNSMKSHLLKANALILLERYDMARDAILSGLQV 167 (494)
Q Consensus 124 ~~~~~~al~l~------p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 167 (494)
++.|.+.+.+. ...++.-|.+|+.|..++++.+|+.++.+-|++
T Consensus 255 ~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaI 304 (639)
T KOG1130|consen 255 IEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAI 304 (639)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99998866543 234567899999999999999999999887765
No 234
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.68 E-value=0.0045 Score=60.46 Aligned_cols=109 Identities=20% Similarity=0.209 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHHh-cChHHHHHHHHHHhccCC--CC----cccccChhHHHHHHHhhhccCCCCCccccccCCCCCc
Q 011050 45 THVFDLVQKGNRAFRE-SNFEEAISNYSRANNIKP--GD----PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPT 117 (494)
Q Consensus 45 ~~~~~~~~~g~~~~~~-~~~~~Ai~~y~~al~~~p--~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (494)
..+..+...|..+... |++++|+.+|.+|+++-. +. ..++.+.|.++..+++|
T Consensus 112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y-------------------- 171 (282)
T PF14938_consen 112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRY-------------------- 171 (282)
T ss_dssp HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-H--------------------
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCH--------------------
Confidence 3456677788888888 999999999999998722 11 26777889999999999
Q ss_pred hhHHHHHHHHHHHhhcc---c---cchHH-HHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHH
Q 011050 118 THAELALKDAEKLLNLQ---S---NSMKS-HLLKANALILLERYDMARDAILSGLQVDPFSNPLQA 176 (494)
Q Consensus 118 ~~~~~a~~~~~~al~l~---p---~~~~a-~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~ 176 (494)
.+|++.++++.... + -+++. ++..+.++...|++-.|...+++....+|.+....+
T Consensus 172 ---~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E 234 (282)
T PF14938_consen 172 ---EEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSRE 234 (282)
T ss_dssp ---HHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHH
T ss_pred ---HHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHH
Confidence 99999999988642 1 12333 455667888999999999999999999998765433
No 235
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=96.67 E-value=0.0007 Score=65.88 Aligned_cols=44 Identities=36% Similarity=0.852 Sum_probs=38.2
Q ss_pred ccccccccccCcEEcCCCCcccHhhHHHhcc--CCCCCCCCCcccc
Q 011050 204 DCTLCLKLLYEPITTPCGHSFCRSCLFQSMD--RGNKCPLCRAVLF 247 (494)
Q Consensus 204 ~C~iC~~~~~~Pv~~~cgh~fc~~Cl~~~~~--~~~~CP~Cr~~~~ 247 (494)
.|.||-+-=++-.+-||||..|..||..|.. .+..||-||.++.
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIK 416 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIK 416 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEec
Confidence 5889999888877789999999999999875 3567999999874
No 236
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.66 E-value=0.0067 Score=64.82 Aligned_cols=121 Identities=21% Similarity=0.343 Sum_probs=106.5
Q ss_pred hhHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCc----ccccChhHHHHHHH--hhhccCCCCCccccccCCCC
Q 011050 42 DRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP----IVLGNRSSAYIRIS--QFLKHRPPSASEYRPLNGLD 115 (494)
Q Consensus 42 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~----~~~~~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 115 (494)
.....+.....+|+..|.+++|..|...|..++.+.|.++ ....+.+.||+.++ +|
T Consensus 48 v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~------------------ 109 (748)
T KOG4151|consen 48 VFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEY------------------ 109 (748)
T ss_pred HHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccch------------------
Confidence 3455678889999999999999999999999999988654 77888888888765 67
Q ss_pred CchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHhhh
Q 011050 116 PTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTT 185 (494)
Q Consensus 116 ~~~~~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~ 185 (494)
..++.++.-|+...|...++++.++.+|..+++++-|+.++.-....+|.+..+..-..+++..+
T Consensus 110 -----~~~~~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll 174 (748)
T KOG4151|consen 110 -----PKAIPECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLL 174 (748)
T ss_pred -----hhhcCchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999987777666666666
No 237
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=96.64 E-value=0.0056 Score=59.94 Aligned_cols=106 Identities=17% Similarity=0.103 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHH--HHH--hhhccCCCCCccccccCCCCCchhHHHH
Q 011050 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYI--RIS--QFLKHRPPSASEYRPLNGLDPTTHAELA 123 (494)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a 123 (494)
+.....-..+++.++++-|...+..+-+.+.+.. ..++|.+++ ..| .+ .+|
T Consensus 132 E~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~--l~qLa~awv~l~~g~e~~-----------------------~~A 186 (290)
T PF04733_consen 132 ELLALAVQILLKMNRPDLAEKELKNMQQIDEDSI--LTQLAEAWVNLATGGEKY-----------------------QDA 186 (290)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHH--HHHHHHHHHHHHHTTTCC-----------------------CHH
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHH--HHHHHHHHHHHHhCchhH-----------------------HHH
Confidence 3334455567788888888888888877765533 344444443 344 25 788
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHH
Q 011050 124 LKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASL 178 (494)
Q Consensus 124 ~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~ 178 (494)
.-.|+...+..+.++..+..+|.++..+|+|++|.+.+.+++..+|.+++....+
T Consensus 187 ~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNl 241 (290)
T PF04733_consen 187 FYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANL 241 (290)
T ss_dssp HHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHH
Confidence 8888887777777778888888888888888888888888888888877654444
No 238
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.00037 Score=47.87 Aligned_cols=44 Identities=30% Similarity=0.785 Sum_probs=36.4
Q ss_pred cccccccccccCcEEcCCCCc-ccHhhHHHhcc-CCCCCCCCCccc
Q 011050 203 FDCTLCLKLLYEPITTPCGHS-FCRSCLFQSMD-RGNKCPLCRAVL 246 (494)
Q Consensus 203 ~~C~iC~~~~~~Pv~~~cgh~-fc~~Cl~~~~~-~~~~CP~Cr~~~ 246 (494)
.+|.||.+.-.+-|..-|||- +|..|-.+.+. .+..||+||.++
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi 53 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPI 53 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHH
Confidence 679999988888788899995 68889877766 456799999875
No 239
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.0017 Score=62.28 Aligned_cols=53 Identities=21% Similarity=0.596 Sum_probs=45.9
Q ss_pred CCCCCCCcccccccccccccCcEEcCCCCcccHhhHHHhccCCCCCCCCCccc
Q 011050 194 HGTPERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVL 246 (494)
Q Consensus 194 ~~~~~~~~~~~C~iC~~~~~~Pv~~~cgh~fc~~Cl~~~~~~~~~CP~Cr~~~ 246 (494)
......+++-.|+||.---.+.+..||||.-|..||.+++.+.+.|--|+..+
T Consensus 414 ~~~lp~sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv 466 (489)
T KOG4692|consen 414 NKDLPDSEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTV 466 (489)
T ss_pred cCCCCCcccccCcceecccchhhccCCCCchHHHHHHHHHhcCCeeeEeccee
Confidence 34555678889999998777778889999999999999999999999998765
No 240
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=96.56 E-value=0.012 Score=57.54 Aligned_cols=92 Identities=13% Similarity=0.131 Sum_probs=74.0
Q ss_pred ChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhccccchHHH
Q 011050 62 NFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSH 141 (494)
Q Consensus 62 ~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~a~ 141 (494)
++++|.-.|.+..+..+.++..+...|.|++.+|+| ++|.+.+..|+..+|+++.++
T Consensus 182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~-----------------------~eAe~~L~~al~~~~~~~d~L 238 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHY-----------------------EEAEELLEEALEKDPNDPDTL 238 (290)
T ss_dssp CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-H-----------------------HHHHHHHHHHCCC-CCHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCH-----------------------HHHHHHHHHHHHhccCCHHHH
Confidence 689999999998888788888999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHccccCCCCCchhHH
Q 011050 142 LLKANALILLERY-DMARDAILSGLQVDPFSNPLQA 176 (494)
Q Consensus 142 ~~~g~~~~~~~~~-~~A~~~~~~al~l~p~~~~~~~ 176 (494)
.+++-+...+|+. +.+...+.+.-..+|+++-+..
T Consensus 239 aNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~ 274 (290)
T PF04733_consen 239 ANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKD 274 (290)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHH
Confidence 9999888888888 4555677777778888775543
No 241
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=96.51 E-value=0.005 Score=62.34 Aligned_cols=86 Identities=19% Similarity=0.223 Sum_probs=73.9
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHH
Q 011050 50 LVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEK 129 (494)
Q Consensus 50 ~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 129 (494)
+-.++..+++.++|..|+....+|++++|....+|+.+|.+.+.++++ .+|+.++++
T Consensus 41 ~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~-----------------------~~A~~~l~~ 97 (476)
T KOG0376|consen 41 FANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF-----------------------KKALLDLEK 97 (476)
T ss_pred echhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH-----------------------HHHHHHHHH
Confidence 445778889999999999999999999999999999999999999999 999999999
Q ss_pred HhhccccchHHHHHHHHHHH--HHHHHHHHH
Q 011050 130 LLNLQSNSMKSHLLKANALI--LLERYDMAR 158 (494)
Q Consensus 130 al~l~p~~~~a~~~~g~~~~--~~~~~~~A~ 158 (494)
...+.|+.+++......+-. .+..|+.|+
T Consensus 98 ~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~ai 128 (476)
T KOG0376|consen 98 VKKLAPNDPDATRKIDECNKIVSEEKFEKAI 128 (476)
T ss_pred hhhcCcCcHHHHHHHHHHHHHHHHHhhhhcc
Confidence 99999999998877766643 233444443
No 242
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.0013 Score=63.92 Aligned_cols=45 Identities=29% Similarity=0.796 Sum_probs=39.4
Q ss_pred ccccccccccccCcEEcCCCCc-ccHhhHHHhccCCCCCCCCCccc
Q 011050 202 DFDCTLCLKLLYEPITTPCGHS-FCRSCLFQSMDRGNKCPLCRAVL 246 (494)
Q Consensus 202 ~~~C~iC~~~~~~Pv~~~cgh~-fc~~Cl~~~~~~~~~CP~Cr~~~ 246 (494)
-.+|.||+.-.++-+.+||.|. .|..|.....-+.+.||+||+++
T Consensus 290 gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi 335 (349)
T KOG4265|consen 290 GKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPI 335 (349)
T ss_pred CCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccch
Confidence 5689999999999999999997 59999876655677899999986
No 243
>PRK15331 chaperone protein SicA; Provisional
Probab=96.51 E-value=0.017 Score=50.79 Aligned_cols=75 Identities=13% Similarity=-0.002 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHH
Q 011050 49 DLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAE 128 (494)
Q Consensus 49 ~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 128 (494)
-+...|..+...++|++|+..|..|..++++|+..++..|.||+.+|+. .+|..-+.
T Consensus 73 Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~-----------------------~~A~~~f~ 129 (165)
T PRK15331 73 YTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA-----------------------AKARQCFE 129 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH-----------------------HHHHHHHH
Confidence 3566777888899999999999999999999999999999999999999 99999899
Q ss_pred HHhhccccchHHHHHHHHHH
Q 011050 129 KLLNLQSNSMKSHLLKANAL 148 (494)
Q Consensus 129 ~al~l~p~~~~a~~~~g~~~ 148 (494)
.++. .|.+ ..+..+|.++
T Consensus 130 ~a~~-~~~~-~~l~~~A~~~ 147 (165)
T PRK15331 130 LVNE-RTED-ESLRAKALVY 147 (165)
T ss_pred HHHh-Ccch-HHHHHHHHHH
Confidence 8888 4553 3333444443
No 244
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=96.47 E-value=0.00051 Score=66.21 Aligned_cols=113 Identities=7% Similarity=0.018 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHH
Q 011050 49 DLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAE 128 (494)
Q Consensus 49 ~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 128 (494)
..+..|+.+++.|.|..|+.+|.+.+..+..+..+-.+ +..|.+..+| ..|+.++.
T Consensus 236 ~~K~~G~~Fsk~~~~~~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~-----------------------~~~~~~~~ 291 (536)
T KOG4648|consen 236 PIKKPGYKFSKKAMRSVPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNS-----------------------NCGIIEEV 291 (536)
T ss_pred cccCcchhhhhhhccccceeEeeccccccCccccCccc-HHHHHHHhhc-----------------------chhHHHHH
Confidence 45789999999999999999999999998888877777 9999999999 99999999
Q ss_pred HHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHhhh
Q 011050 129 KLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTT 185 (494)
Q Consensus 129 ~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~ 185 (494)
+++.++|.+..+.-+.|.+--.+|...++..+++.++.+.|.+......+....+.+
T Consensus 292 ~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~~~~~~sr~~~~i 348 (536)
T KOG4648|consen 292 KKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAVETPKETETRKDTKI 348 (536)
T ss_pred HhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhheeeeccccccchhhhhhhcccc
Confidence 999999999999999999999999999999999999999999988766665554433
No 245
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=96.46 E-value=0.015 Score=60.90 Aligned_cols=105 Identities=17% Similarity=-0.019 Sum_probs=94.8
Q ss_pred HHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhc
Q 011050 54 GNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNL 133 (494)
Q Consensus 54 g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l 133 (494)
++..--.++.++|+....++++.-|..+.+|..+|+++-++++. +.|.+.|..-++.
T Consensus 658 ~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~i-----------------------e~aR~aY~~G~k~ 714 (913)
T KOG0495|consen 658 ANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENI-----------------------EMAREAYLQGTKK 714 (913)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHH-----------------------HHHHHHHHhcccc
Confidence 33344568889999999999999999999999999999999999 9999999999999
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHH
Q 011050 134 QSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (494)
Q Consensus 134 ~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 181 (494)
.|.....|..++..-...|+.-.|...++++.-.||.+..++...=++
T Consensus 715 cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ 762 (913)
T KOG0495|consen 715 CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRM 762 (913)
T ss_pred CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHH
Confidence 999999999999999999999999999999999999999877654433
No 246
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.42 E-value=0.012 Score=59.68 Aligned_cols=103 Identities=15% Similarity=0.152 Sum_probs=88.8
Q ss_pred HhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhccccch
Q 011050 59 RESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSM 138 (494)
Q Consensus 59 ~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~ 138 (494)
..++++.|+..+.+..+.+|. +...+|.+++..++. .+|++.+.+++..+|.+.
T Consensus 181 ~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E-----------------------~~AI~ll~~aL~~~p~d~ 234 (395)
T PF09295_consen 181 LTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEE-----------------------VEAIRLLNEALKENPQDS 234 (395)
T ss_pred hcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcH-----------------------HHHHHHHHHHHHhCCCCH
Confidence 347899999999999988875 445578888887777 899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHhhhhh
Q 011050 139 KSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTAS 187 (494)
Q Consensus 139 ~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~ 187 (494)
..+...|..+...++++.|+...++|..+.|++-..|..+..+--.++.
T Consensus 235 ~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d 283 (395)
T PF09295_consen 235 ELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGD 283 (395)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999888877665444433
No 247
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.42 E-value=0.0053 Score=64.94 Aligned_cols=70 Identities=13% Similarity=0.000 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHH
Q 011050 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDA 127 (494)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 127 (494)
..+...|..+...|++++|...|++|+.++| +..+|..+|.++...|++ ++|++.+
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~-----------------------~eA~~~~ 476 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDN-----------------------RLAADAY 476 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCH-----------------------HHHHHHH
Confidence 3455567777889999999999999999999 478999999999999999 9999999
Q ss_pred HHHhhccccchHHH
Q 011050 128 EKLLNLQSNSMKSH 141 (494)
Q Consensus 128 ~~al~l~p~~~~a~ 141 (494)
++|++++|.++..|
T Consensus 477 ~~A~~L~P~~pt~~ 490 (517)
T PRK10153 477 STAFNLRPGENTLY 490 (517)
T ss_pred HHHHhcCCCCchHH
Confidence 99999999987633
No 248
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.41 E-value=0.0058 Score=57.85 Aligned_cols=79 Identities=15% Similarity=0.081 Sum_probs=67.8
Q ss_pred ccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhccccc---hHHHHHHHHHHHHHHHHHHHHHH
Q 011050 84 LGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNS---MKSHLLKANALILLERYDMARDA 160 (494)
Q Consensus 84 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~---~~a~~~~g~~~~~~~~~~~A~~~ 160 (494)
+++-|.-+++.|+| ..|...+..-++.-|+. +.|+||+|.+++.+|+|++|...
T Consensus 144 ~Y~~A~~~~ksgdy-----------------------~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~ 200 (262)
T COG1729 144 LYNAALDLYKSGDY-----------------------AEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYI 200 (262)
T ss_pred HHHHHHHHHHcCCH-----------------------HHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHH
Confidence 57788889999999 99999999999988765 56999999999999999999999
Q ss_pred HHccccCCCCCchhHHHHHHHHhhh
Q 011050 161 ILSGLQVDPFSNPLQASLQNLERTT 185 (494)
Q Consensus 161 ~~~al~l~p~~~~~~~~~~~~~~~~ 185 (494)
|..+.+-.|.++.+-+++-++-..+
T Consensus 201 f~~~~k~~P~s~KApdallKlg~~~ 225 (262)
T COG1729 201 FARVVKDYPKSPKAPDALLKLGVSL 225 (262)
T ss_pred HHHHHHhCCCCCCChHHHHHHHHHH
Confidence 9999999999988766665544433
No 249
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.0028 Score=58.72 Aligned_cols=49 Identities=22% Similarity=0.564 Sum_probs=39.2
Q ss_pred CCCcccccccccccccCcE----------EcCCCCcccHhhHHHhccCCC--CCCCCCccc
Q 011050 198 ERTDDFDCTLCLKLLYEPI----------TTPCGHSFCRSCLFQSMDRGN--KCPLCRAVL 246 (494)
Q Consensus 198 ~~~~~~~C~iC~~~~~~Pv----------~~~cgh~fc~~Cl~~~~~~~~--~CP~Cr~~~ 246 (494)
.-.++--|.+|...+..-+ .++|+|.|+..||.+|..-|+ .||-|+..+
T Consensus 220 khl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekV 280 (328)
T KOG1734|consen 220 KHLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKV 280 (328)
T ss_pred CCCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHh
Confidence 3446678999988766443 689999999999999987554 699999876
No 250
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.0023 Score=63.13 Aligned_cols=49 Identities=27% Similarity=0.806 Sum_probs=39.9
Q ss_pred CCCcccccccccccccCcE-----E---cCCCCcccHhhHHHhcc--C-----CCCCCCCCccc
Q 011050 198 ERTDDFDCTLCLKLLYEPI-----T---TPCGHSFCRSCLFQSMD--R-----GNKCPLCRAVL 246 (494)
Q Consensus 198 ~~~~~~~C~iC~~~~~~Pv-----~---~~cgh~fc~~Cl~~~~~--~-----~~~CP~Cr~~~ 246 (494)
....+..|-||++...++. . .+|.|+||..|+..|-. + ...||.||...
T Consensus 157 ~~s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s 220 (344)
T KOG1039|consen 157 QKSSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPS 220 (344)
T ss_pred CccccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcc
Confidence 3467889999999888776 3 57999999999999973 3 36799999865
No 251
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=96.33 E-value=0.015 Score=61.28 Aligned_cols=99 Identities=12% Similarity=0.036 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHH
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (494)
...+.-.|.-+-..|++++|+.+.++||+..|..+.+|...|.++-..|++ .+|.+.
T Consensus 194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~-----------------------~~Aa~~ 250 (517)
T PF12569_consen 194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDL-----------------------KEAAEA 250 (517)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCH-----------------------HHHHHH
Confidence 445566777788899999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCC
Q 011050 127 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVD 168 (494)
Q Consensus 127 ~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~ 168 (494)
++.|-.+|+.+-..-...+..+...|+.++|.+.+....+-+
T Consensus 251 ~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 251 MDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 999999999887777777888889999999999888776654
No 252
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.32 E-value=0.025 Score=58.67 Aligned_cols=114 Identities=24% Similarity=0.230 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCc----------
Q 011050 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPT---------- 117 (494)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 117 (494)
..++..-+.+...|+|++|+....+.+...|++..++.-.-.|.+++++|-.+. .++...+.
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~AL--------k~ikk~~~~~~~~~~~fE 84 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDAL--------KLIKKNGALLVINSFFFE 84 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHH--------HHHHhcchhhhcchhhHH
Confidence 566777777788888888888888888887777765555555555555550000 00000000
Q ss_pred --------hhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCc
Q 011050 118 --------THAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSN 172 (494)
Q Consensus 118 --------~~~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~ 172 (494)
...++|+..++ .+++......-..|++++.+|+|++|.+.|+...+-+.++-
T Consensus 85 KAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~ 144 (652)
T KOG2376|consen 85 KAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQ 144 (652)
T ss_pred HHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchH
Confidence 00055555555 45566666777788888888888888888888766555443
No 253
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.23 E-value=0.0018 Score=65.34 Aligned_cols=50 Identities=30% Similarity=0.763 Sum_probs=41.5
Q ss_pred CCCcccccccccccccCcEEcCCCCcccHhhHHHhcc-----CCCCCCCCCcccc
Q 011050 198 ERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMD-----RGNKCPLCRAVLF 247 (494)
Q Consensus 198 ~~~~~~~C~iC~~~~~~Pv~~~cgh~fc~~Cl~~~~~-----~~~~CP~Cr~~~~ 247 (494)
.......|.+|.+.-.+++..+|.|.||+-|+..... .+-.||.|-..+.
T Consensus 532 enk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 532 ENKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLS 586 (791)
T ss_pred cccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence 3456778999999999999999999999999977553 2346999988774
No 254
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=96.09 E-value=0.0045 Score=46.26 Aligned_cols=29 Identities=31% Similarity=0.789 Sum_probs=26.8
Q ss_pred CCCCcccHhhHHHhccCCCCCCCCCcccc
Q 011050 219 PCGHSFCRSCLFQSMDRGNKCPLCRAVLF 247 (494)
Q Consensus 219 ~cgh~fc~~Cl~~~~~~~~~CP~Cr~~~~ 247 (494)
-|.|.|+..||.+|+.....||++|++..
T Consensus 53 ~CnHaFH~HCI~rWL~Tk~~CPld~q~w~ 81 (88)
T COG5194 53 VCNHAFHDHCIYRWLDTKGVCPLDRQTWV 81 (88)
T ss_pred ecchHHHHHHHHHHHhhCCCCCCCCceeE
Confidence 69999999999999999999999999753
No 255
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.08 E-value=0.0087 Score=36.08 Aligned_cols=33 Identities=27% Similarity=0.320 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccccCCCCC
Q 011050 139 KSHLLKANALILLERYDMARDAILSGLQVDPFS 171 (494)
Q Consensus 139 ~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~ 171 (494)
.+++.+|.++..++++++|...|.++++++|.+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 578999999999999999999999999998863
No 256
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.03 E-value=0.0064 Score=37.84 Aligned_cols=33 Identities=21% Similarity=0.096 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccccCCCCC
Q 011050 139 KSHLLKANALILLERYDMARDAILSGLQVDPFS 171 (494)
Q Consensus 139 ~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~ 171 (494)
+|++++|.+|..+|++++|+..|++.++..|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 478999999999999999999999999988874
No 257
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.031 Score=51.92 Aligned_cols=76 Identities=17% Similarity=0.153 Sum_probs=66.0
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHH
Q 011050 50 LVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEK 129 (494)
Q Consensus 50 ~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 129 (494)
+.+....++..|+|-+++.+.+..+..+|.+..+|+.||.+....=+. .+|.+|+.+
T Consensus 233 llNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~-----------------------~eA~~D~~~ 289 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNE-----------------------AEAKADLQK 289 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCH-----------------------HHHHHHHHH
Confidence 456677788999999999999999999999999999999999887777 999999999
Q ss_pred HhhccccchHHHHHHHHHH
Q 011050 130 LLNLQSNSMKSHLLKANAL 148 (494)
Q Consensus 130 al~l~p~~~~a~~~~g~~~ 148 (494)
+++++|.-..+..+--.++
T Consensus 290 vL~ldpslasvVsrElr~l 308 (329)
T KOG0545|consen 290 VLELDPSLASVVSRELRLL 308 (329)
T ss_pred HHhcChhhHHHHHHHHHHH
Confidence 9999998777665554444
No 258
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.98 E-value=0.0041 Score=66.94 Aligned_cols=51 Identities=25% Similarity=0.715 Sum_probs=39.9
Q ss_pred CCCCccccccccccccc-C----c--EEcCCCCcccHhhHHHhccCC--CCCCCCCcccc
Q 011050 197 PERTDDFDCTLCLKLLY-E----P--ITTPCGHSFCRSCLFQSMDRG--NKCPLCRAVLF 247 (494)
Q Consensus 197 ~~~~~~~~C~iC~~~~~-~----P--v~~~cgh~fc~~Cl~~~~~~~--~~CP~Cr~~~~ 247 (494)
.......+|+||..+++ . | ..-.|.|.|+.+|+.+|+..+ +.||+||..++
T Consensus 1464 ~~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1464 EKFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred hhcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 34567789999999887 1 2 234699999999999999854 57999998763
No 259
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=95.95 E-value=0.0096 Score=37.43 Aligned_cols=33 Identities=18% Similarity=0.300 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCC
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPG 79 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~ 79 (494)
+..+...|..+...|++++|+..|.++++++|+
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 356888999999999999999999999999984
No 260
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.94 E-value=0.011 Score=56.26 Aligned_cols=95 Identities=20% Similarity=0.297 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHH
Q 011050 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (494)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (494)
++......|-..|+.|+|+.|+..|+.|++....++.+-+|.|.|+++.++| ..|++
T Consensus 143 ~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qy-----------------------asALk 199 (459)
T KOG4340|consen 143 EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQY-----------------------ASALK 199 (459)
T ss_pred ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhH-----------------------HHHHH
Confidence 4566777888999999999999999999999999999999999999999999 88988
Q ss_pred HHHHHhhc----ccc-------------------------chHHHHHHHHHHHHHHHHHHHHHHHHc
Q 011050 126 DAEKLLNL----QSN-------------------------SMKSHLLKANALILLERYDMARDAILS 163 (494)
Q Consensus 126 ~~~~al~l----~p~-------------------------~~~a~~~~g~~~~~~~~~~~A~~~~~~ 163 (494)
.....++. .|. -.+|+...+.++++.|+++.|.+.+.-
T Consensus 200 ~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtD 266 (459)
T KOG4340|consen 200 HISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTD 266 (459)
T ss_pred HHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhc
Confidence 88777653 121 234677788889999999999988754
No 261
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.87 E-value=0.061 Score=51.40 Aligned_cols=105 Identities=19% Similarity=0.171 Sum_probs=90.7
Q ss_pred HHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhcccc
Q 011050 57 AFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSN 136 (494)
Q Consensus 57 ~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~ 136 (494)
+.+..+|+.||.+.+.-.+.+|.+...++-+|-||+...+| ..|..-|++..++.|.
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f-----------------------~~AA~CYeQL~ql~P~ 76 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEF-----------------------ALAAECYEQLGQLHPE 76 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHhhChH
Confidence 46788999999999999999999999999999999999999 8999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHhhhhhh
Q 011050 137 SMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASL 188 (494)
Q Consensus 137 ~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~ 188 (494)
..+--+.-|+.++..+.+.+|+...... .++...++..-+++.++...
T Consensus 77 ~~qYrlY~AQSLY~A~i~ADALrV~~~~----~D~~~L~~~~lqLqaAIkYs 124 (459)
T KOG4340|consen 77 LEQYRLYQAQSLYKACIYADALRVAFLL----LDNPALHSRVLQLQAAIKYS 124 (459)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHh----cCCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999876654 34566666666676666543
No 262
>PRK10941 hypothetical protein; Provisional
Probab=95.85 E-value=0.015 Score=56.08 Aligned_cols=75 Identities=17% Similarity=0.111 Sum_probs=66.0
Q ss_pred ccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHc
Q 011050 84 LGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILS 163 (494)
Q Consensus 84 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~ 163 (494)
+.|+=.+|.+.+++ ..|++..+..+.++|+++.-+..+|.+|.++|.+..|+.+++.
T Consensus 184 l~nLK~~~~~~~~~-----------------------~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~ 240 (269)
T PRK10941 184 LDTLKAALMEEKQM-----------------------ELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSY 240 (269)
T ss_pred HHHHHHHHHHcCcH-----------------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 34555778888889 9999999999999999999999999999999999999999999
Q ss_pred cccCCCCCchhHHHHHHH
Q 011050 164 GLQVDPFSNPLQASLQNL 181 (494)
Q Consensus 164 al~l~p~~~~~~~~~~~~ 181 (494)
.++..|+++.+......+
T Consensus 241 fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 241 FVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHhCCCchhHHHHHHHH
Confidence 999999998875544444
No 263
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.85 E-value=0.066 Score=55.61 Aligned_cols=110 Identities=16% Similarity=0.201 Sum_probs=74.1
Q ss_pred HHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHH-------
Q 011050 51 VQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA------- 123 (494)
Q Consensus 51 ~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a------- 123 (494)
+++|..+|+.+..++|+..++ .+++.+..++.-+|+.++++++| +.+-.-|+++..-+.-+.-.+-
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~y----dealdiY~~L~kn~~dd~d~~~r~nl~a~ 155 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERY----DEALDIYQHLAKNNSDDQDEERRANLLAV 155 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhH----HHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 688999999999999999998 66777777888899999999999 2233333333222211110000
Q ss_pred --HHH--HHHHhhcccc-chHHHHHHHHHHHHHHHHHHHHHHHHccccC
Q 011050 124 --LKD--AEKLLNLQSN-SMKSHLLKANALILLERYDMARDAILSGLQV 167 (494)
Q Consensus 124 --~~~--~~~al~l~p~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 167 (494)
... ..+++...|. ..+.+|+.|.++...|+|.+|++.+++|+++
T Consensus 156 ~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~ 204 (652)
T KOG2376|consen 156 AAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRI 204 (652)
T ss_pred HHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 000 1111122232 5667999999999999999999999999543
No 264
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=95.70 E-value=0.0055 Score=60.42 Aligned_cols=35 Identities=29% Similarity=0.875 Sum_probs=31.4
Q ss_pred cccccccccccccCcEEcCCCCcccHhhHHHhccC
Q 011050 201 DDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDR 235 (494)
Q Consensus 201 ~~~~C~iC~~~~~~Pv~~~cgh~fc~~Cl~~~~~~ 235 (494)
+++.|++|...|.+|++++|||+.|+.|....+..
T Consensus 3 eelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 3 EELKCPVCGSFYREPIILPCSHNLCQACARNILVQ 37 (699)
T ss_pred ccccCceehhhccCceEeecccHHHHHHHHhhccc
Confidence 57899999999999999999999999998866543
No 265
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.64 E-value=0.0071 Score=58.89 Aligned_cols=48 Identities=31% Similarity=0.694 Sum_probs=37.2
Q ss_pred CCCCCcccccccccccccCcEEcCCCCcccHhhHHHhccCCCCCCCCCccc
Q 011050 196 TPERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVL 246 (494)
Q Consensus 196 ~~~~~~~~~C~iC~~~~~~Pv~~~cgh~fc~~Cl~~~~~~~~~CP~Cr~~~ 246 (494)
.........|.+|.+-.++.+.+||||..| |...... -..||+||+.+
T Consensus 299 ~~~~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~~-l~~CPvCR~rI 346 (355)
T KOG1571|consen 299 FRELPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSKH-LPQCPVCRQRI 346 (355)
T ss_pred ccccCCCCceEEecCCccceeeecCCcEEE--chHHHhh-CCCCchhHHHH
Confidence 334556678999999999999999999988 8765433 23599999865
No 266
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.64 E-value=0.062 Score=52.49 Aligned_cols=89 Identities=16% Similarity=0.103 Sum_probs=76.7
Q ss_pred HHHHHHhcChHHHHHHHHHHhccCCCCc-ccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhh
Q 011050 54 GNRAFRESNFEEAISNYSRANNIKPGDP-IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLN 132 (494)
Q Consensus 54 g~~~~~~~~~~~Ai~~y~~al~~~p~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~ 132 (494)
-.++..+.||..|+....-.+.++...- .+-...|-||+.+|+| ++|+..|.-+.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY-----------------------~~Al~~Y~~~~~ 85 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDY-----------------------EEALNVYTFLMN 85 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccH-----------------------HHHHHHHHHHhc
Confidence 4667888999999999988887765433 5555678999999999 999999999999
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHccc
Q 011050 133 LQSNSMKSHLLKANALILLERYDMARDAILSGL 165 (494)
Q Consensus 133 l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al 165 (494)
.+.-..+.+.++|-+++.+|.|.+|.....+|-
T Consensus 86 ~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~ 118 (557)
T KOG3785|consen 86 KDDAPAELGVNLACCKFYLGQYIEAKSIAEKAP 118 (557)
T ss_pred cCCCCcccchhHHHHHHHHHHHHHHHHHHhhCC
Confidence 887788899999999999999999999887763
No 267
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=95.61 E-value=0.0061 Score=42.52 Aligned_cols=45 Identities=29% Similarity=0.687 Sum_probs=36.1
Q ss_pred cccccccccccccCcEEcCCCCcccHhhHHHhccCCCCCCCCCcccc
Q 011050 201 DDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 247 (494)
Q Consensus 201 ~~~~C~iC~~~~~~Pv~~~cgh~fc~~Cl~~~~~~~~~CP~Cr~~~~ 247 (494)
....|-+|...-...+.+||||..|..|...+ .-+-||.|..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~--rYngCPfC~~~~~ 50 (55)
T PF14447_consen 6 PEQPCVFCGFVGTKGTVLPCGHLICDNCFPGE--RYNGCPFCGTPFE 50 (55)
T ss_pred cceeEEEccccccccccccccceeeccccChh--hccCCCCCCCccc
Confidence 45678888888888899999999999996543 3356999998874
No 268
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=95.58 E-value=0.014 Score=57.09 Aligned_cols=104 Identities=14% Similarity=0.060 Sum_probs=74.0
Q ss_pred hhHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCC--C----cccccChhHHHHHHHhhhccCCCCCccccccCCCC
Q 011050 42 DRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPG--D----PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLD 115 (494)
Q Consensus 42 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~--~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (494)
+....+..+...|+.|-..|+|++|..+|.+|....-+ + ...|.+-+.+|.+. ++
T Consensus 30 ~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~------------------ 90 (282)
T PF14938_consen 30 DYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DP------------------ 90 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-TH------------------
T ss_pred CHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CH------------------
Confidence 44444556667777777889999999999999776322 1 24455555554443 66
Q ss_pred CchhHHHHHHHHHHHhhcc-----c-cchHHHHHHHHHHHHH-HHHHHHHHHHHccccCCC
Q 011050 116 PTTHAELALKDAEKLLNLQ-----S-NSMKSHLLKANALILL-ERYDMARDAILSGLQVDP 169 (494)
Q Consensus 116 ~~~~~~~a~~~~~~al~l~-----p-~~~~a~~~~g~~~~~~-~~~~~A~~~~~~al~l~p 169 (494)
.+|+..+++|+++- + .-...+..+|.+|... |++++|++.|.+|+.+-.
T Consensus 91 -----~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~ 146 (282)
T PF14938_consen 91 -----DEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYE 146 (282)
T ss_dssp -----HHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 89999999999862 2 2356788999999888 999999999999998744
No 269
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.56 E-value=0.0051 Score=61.76 Aligned_cols=49 Identities=39% Similarity=0.763 Sum_probs=36.9
Q ss_pred CCcccccccccccccC-----------------cEEcCCCCcccHhhHHHhccCCC-CCCCCCcccc
Q 011050 199 RTDDFDCTLCLKLLYE-----------------PITTPCGHSFCRSCLFQSMDRGN-KCPLCRAVLF 247 (494)
Q Consensus 199 ~~~~~~C~iC~~~~~~-----------------Pv~~~cgh~fc~~Cl~~~~~~~~-~CP~Cr~~~~ 247 (494)
......|+||+....- -..+||.|.|++.||..|-..-+ .||.||++++
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence 4455689999865431 12349999999999999987444 7999999874
No 270
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.54 E-value=0.071 Score=47.98 Aligned_cols=101 Identities=14% Similarity=0.147 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCC---cccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHH
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD---PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 123 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 123 (494)
+......|..++..+++++|+.....++...-+. +.+-.++|.+.+..+.+ ++|
T Consensus 89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~-----------------------D~A 145 (207)
T COG2976 89 VLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKA-----------------------DAA 145 (207)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhH-----------------------HHH
Confidence 4566788999999999999999999999653332 25556788889999999 888
Q ss_pred HHHHHHHhhccccchH-HHHHHHHHHHHHHHHHHHHHHHHccccCCCCCc
Q 011050 124 LKDAEKLLNLQSNSMK-SHLLKANALILLERYDMARDAILSGLQVDPFSN 172 (494)
Q Consensus 124 ~~~~~~al~l~p~~~~-a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~ 172 (494)
+..++.... +.+.. .--.+|.++...|+-.+|+..|.+++..++++.
T Consensus 146 L~~L~t~~~--~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 146 LKTLDTIKE--ESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred HHHHhcccc--ccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 876665433 23322 234679999999999999999999999885443
No 271
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.53 E-value=0.13 Score=46.34 Aligned_cols=99 Identities=23% Similarity=0.264 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhH-HHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHH
Q 011050 49 DLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSS-AYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDA 127 (494)
Q Consensus 49 ~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 127 (494)
.+...|......+++..|+..+.+++...+.+.......+. ++...+++ ..|...+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~a~~~~ 153 (291)
T COG0457 97 ALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDY-----------------------EEALELY 153 (291)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCH-----------------------HHHHHHH
Confidence 34445555555555666666666666655555333333334 55555666 6666666
Q ss_pred HHHhhccc---cchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCC
Q 011050 128 EKLLNLQS---NSMKSHLLKANALILLERYDMARDAILSGLQVDPF 170 (494)
Q Consensus 128 ~~al~l~p---~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~ 170 (494)
.+++..+| .....++..+..+...+++++|+..+.+++...+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 199 (291)
T COG0457 154 EKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPD 199 (291)
T ss_pred HHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcc
Confidence 66655554 34444445555555556666666666666666555
No 272
>PRK10941 hypothetical protein; Provisional
Probab=95.52 E-value=0.052 Score=52.28 Aligned_cols=76 Identities=18% Similarity=0.233 Sum_probs=68.1
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHH
Q 011050 50 LVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEK 129 (494)
Q Consensus 50 ~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 129 (494)
+...-..+.+.++|+.|+.+....+.++|+++.-+.-||.+|.+++.+ ..|..|++.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~-----------------------~~A~~DL~~ 240 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCE-----------------------HVALSDLSY 240 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc-----------------------HHHHHHHHH
Confidence 345566678999999999999999999999999999999999999999 999999999
Q ss_pred HhhccccchHHHHHHHHHH
Q 011050 130 LLNLQSNSMKSHLLKANAL 148 (494)
Q Consensus 130 al~l~p~~~~a~~~~g~~~ 148 (494)
.++..|+.+.+..-+.++.
T Consensus 241 fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 241 FVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHhCCCchhHHHHHHHHH
Confidence 9999999998876665554
No 273
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.39 E-value=0.046 Score=52.34 Aligned_cols=82 Identities=13% Similarity=0.169 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHH
Q 011050 43 RYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAEL 122 (494)
Q Consensus 43 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (494)
..+.|......|....+.|+.++|...|..|+.++|.++.++...|...-.-++. -+
T Consensus 112 ~~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~i-----------------------v~ 168 (472)
T KOG3824|consen 112 KVKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEI-----------------------VE 168 (472)
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhh-----------------------Hh
Confidence 3344555556667777778888888888888888888877766555554444444 66
Q ss_pred HHHHHHHHhhccccchHHHHHHHHH
Q 011050 123 ALKDAEKLLNLQSNSMKSHLLKANA 147 (494)
Q Consensus 123 a~~~~~~al~l~p~~~~a~~~~g~~ 147 (494)
|-..|-+|+.++|.+.+|+.+++..
T Consensus 169 ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 169 ADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred hhhhhheeeeeCCCchHHHhhhhcc
Confidence 7677777888888887777777654
No 274
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.34 E-value=0.0086 Score=55.34 Aligned_cols=60 Identities=30% Similarity=0.750 Sum_probs=37.5
Q ss_pred cccccccc-ccCcEE-cCCCCcccHhhHHHhccCCCCCCCCCcccccCCCCCcccccHHHHHHHhChH
Q 011050 204 DCTLCLKL-LYEPIT-TPCGHSFCRSCLFQSMDRGNKCPLCRAVLFITPRTCAVSVTLNSIIQKNFPE 269 (494)
Q Consensus 204 ~C~iC~~~-~~~Pv~-~~cgh~fc~~Cl~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~l~~~~~~~~p~ 269 (494)
.|.-|... -.+|.. +.|+|.||..|..-. ....||+|+..+. ....+..|..-+..+|.+
T Consensus 5 hCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~--~~~~C~lCkk~ir----~i~l~~slp~~ik~~F~d 66 (233)
T KOG4739|consen 5 HCNKCFRFPSQDPFFLTACRHVFCEPCLKAS--SPDVCPLCKKSIR----IIQLNRSLPTDIKSYFAD 66 (233)
T ss_pred EeccccccCCCCceeeeechhhhhhhhcccC--Cccccccccceee----eeecccccchhHHHHccC
Confidence 57766642 245543 599999999997543 2348999999863 223333455555555543
No 275
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.33 E-value=0.0051 Score=39.58 Aligned_cols=28 Identities=11% Similarity=-0.035 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHccccC
Q 011050 140 SHLLKANALILLERYDMARDAILSGLQV 167 (494)
Q Consensus 140 a~~~~g~~~~~~~~~~~A~~~~~~al~l 167 (494)
+|..+|.+|..+|+|++|++.|+++|.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5789999999999999999999996654
No 276
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.29 E-value=0.092 Score=47.30 Aligned_cols=101 Identities=25% Similarity=0.197 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhc--cCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHH
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANN--IKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 124 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 124 (494)
.......+..+...+++..++..+..++. ..+.....+...+..+...+++ ..++
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~ 115 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKY-----------------------EEAL 115 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhH-----------------------HHHH
Confidence 34556677788888999999999999887 6788888888888888888888 8999
Q ss_pred HHHHHHhhccccchHHHHHHHH-HHHHHHHHHHHHHHHHccccCCCC
Q 011050 125 KDAEKLLNLQSNSMKSHLLKAN-ALILLERYDMARDAILSGLQVDPF 170 (494)
Q Consensus 125 ~~~~~al~l~p~~~~a~~~~g~-~~~~~~~~~~A~~~~~~al~l~p~ 170 (494)
..+.+++..++.........+. ++...|+++.|+..|.+++..+|.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 162 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPE 162 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 9999999988877666666777 889999999999999999887763
No 277
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=95.25 E-value=0.063 Score=45.26 Aligned_cols=71 Identities=13% Similarity=0.090 Sum_probs=59.4
Q ss_pred hhHHHHHHHHHHHhh-cccc-chHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHhhhhhh
Q 011050 118 THAELALKDAEKLLN-LQSN-SMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASL 188 (494)
Q Consensus 118 ~~~~~a~~~~~~al~-l~p~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~ 188 (494)
.++.+.+..++..+. -.|. .-...|++|..++.+++|++|+.+.+..|+.+|+|.++....+.+++++.+.
T Consensus 49 ~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~ied~itke 121 (149)
T KOG3364|consen 49 EDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKETIEDKITKE 121 (149)
T ss_pred HHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhc
Confidence 344888888888886 4443 3567889999999999999999999999999999999998888888877553
No 278
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=95.23 E-value=0.089 Score=51.07 Aligned_cols=68 Identities=15% Similarity=0.220 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHH
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (494)
+.-|.++|...+.-|+|..|+...++|+.++|.+..+|+.-|.|++.+.++ .+|+..
T Consensus 119 avLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~-----------------------~~a~nw 175 (390)
T KOG0551|consen 119 AVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERF-----------------------AEAVNW 175 (390)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHH-----------------------HHHHHH
Confidence 444667888888889999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccc
Q 011050 127 AEKLLNLQSNS 137 (494)
Q Consensus 127 ~~~al~l~p~~ 137 (494)
++..++.+-..
T Consensus 176 ~ee~~~~d~e~ 186 (390)
T KOG0551|consen 176 CEEGLQIDDEA 186 (390)
T ss_pred HhhhhhhhHHH
Confidence 99887776433
No 279
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=95.10 E-value=0.015 Score=40.23 Aligned_cols=40 Identities=23% Similarity=0.714 Sum_probs=31.2
Q ss_pred ccccccc--cccCcEEcCCC-----CcccHhhHHHhccCC--CCCCCCC
Q 011050 204 DCTLCLK--LLYEPITTPCG-----HSFCRSCLFQSMDRG--NKCPLCR 243 (494)
Q Consensus 204 ~C~iC~~--~~~~Pv~~~cg-----h~fc~~Cl~~~~~~~--~~CP~Cr 243 (494)
.|.||++ .-.+|...||. |.++..||..|+..+ ..||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 3788886 44566777985 789999999999744 4799995
No 280
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=95.09 E-value=0.0048 Score=65.18 Aligned_cols=47 Identities=23% Similarity=0.514 Sum_probs=38.7
Q ss_pred CcccccccccccccCcEE---cCCCCcccHhhHHHhccCCCCCCCCCccc
Q 011050 200 TDDFDCTLCLKLLYEPIT---TPCGHSFCRSCLFQSMDRGNKCPLCRAVL 246 (494)
Q Consensus 200 ~~~~~C~iC~~~~~~Pv~---~~cgh~fc~~Cl~~~~~~~~~CP~Cr~~~ 246 (494)
...-.|++|+.-+.+-.. .+|+|.||..||..|......||+||..+
T Consensus 121 ~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF 170 (1134)
T KOG0825|consen 121 HVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEF 170 (1134)
T ss_pred hhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhh
Confidence 455678888876666532 48999999999999998888999999986
No 281
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=95.04 E-value=0.0045 Score=46.54 Aligned_cols=46 Identities=24% Similarity=0.706 Sum_probs=22.4
Q ss_pred cccccccccccc-C---cEE----cCCCCcccHhhHHHhccC---C--------CCCCCCCcccc
Q 011050 202 DFDCTLCLKLLY-E---PIT----TPCGHSFCRSCLFQSMDR---G--------NKCPLCRAVLF 247 (494)
Q Consensus 202 ~~~C~iC~~~~~-~---Pv~----~~cgh~fc~~Cl~~~~~~---~--------~~CP~Cr~~~~ 247 (494)
...|.||...+. + |.. ..|++.|+..||..|+.. + ..||.|+.++.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 467999998654 2 322 279999999999999762 1 14999998763
No 282
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.04 E-value=0.089 Score=41.69 Aligned_cols=61 Identities=18% Similarity=0.235 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCC--chhHHHHHHH
Q 011050 121 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFS--NPLQASLQNL 181 (494)
Q Consensus 121 ~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~--~~~~~~~~~~ 181 (494)
...+..+++++..+|++..+.|.+|..+...|++++|++.+...++.++++ ..+++.+-.+
T Consensus 5 ~~~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~ 67 (90)
T PF14561_consen 5 APDIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDI 67 (90)
T ss_dssp -HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHH
T ss_pred cccHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHH
Confidence 345678899999999999999999999999999999999999999999976 4454444333
No 283
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.00 E-value=0.2 Score=47.27 Aligned_cols=125 Identities=14% Similarity=0.118 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCc---ccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHH
Q 011050 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP---IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 124 (494)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 124 (494)
...+..+..+++.++|+.|+...++-+.+.|+++ .+++.+|.+++..-.. .+. -++.+.+|+
T Consensus 72 qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~------~~r---------Dq~~~~~A~ 136 (254)
T COG4105 72 QAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD------VTR---------DQSAARAAF 136 (254)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc------ccc---------CHHHHHHHH
Confidence 4567789999999999999999999999999876 4455555554332221 111 234458899
Q ss_pred HHHHHHhhccccchH---------------HHH--HHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHhhhhh
Q 011050 125 KDAEKLLNLQSNSMK---------------SHL--LKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTAS 187 (494)
Q Consensus 125 ~~~~~al~l~p~~~~---------------a~~--~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~ 187 (494)
..+...++.-|++.. |.+ ..|.-|...|.+..|+..++..++--|+-+...+++..+.++...
T Consensus 137 ~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~ 216 (254)
T COG4105 137 AAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYA 216 (254)
T ss_pred HHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHH
Confidence 999999999887543 222 335667888999999999999999988888888888777665543
No 284
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=94.95 E-value=0.068 Score=53.00 Aligned_cols=98 Identities=17% Similarity=0.108 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHH
Q 011050 50 LVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEK 129 (494)
Q Consensus 50 ~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 129 (494)
....+..+..-|++++|.....++++..-+.- +..- .-....+++ ..=++.+++
T Consensus 266 ~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~--~~~l~~~d~-----------------------~~l~k~~e~ 319 (400)
T COG3071 266 VVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRL--IPRLRPGDP-----------------------EPLIKAAEK 319 (400)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHH--HhhcCCCCc-----------------------hHHHHHHHH
Confidence 34456666777888888887777776532211 1000 001112233 445566677
Q ss_pred HhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCch
Q 011050 130 LLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNP 173 (494)
Q Consensus 130 al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~ 173 (494)
.+...|+++..++.+|..++..+.|.+|..+|+.|++..|+...
T Consensus 320 ~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~ 363 (400)
T COG3071 320 WLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASD 363 (400)
T ss_pred HHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhh
Confidence 77777777777777777777777777777777777777776544
No 285
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.87 E-value=0.023 Score=52.28 Aligned_cols=53 Identities=19% Similarity=0.107 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCch
Q 011050 121 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNP 173 (494)
Q Consensus 121 ~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~ 173 (494)
+.|.+.+.+++.+-|.+...||++|....+.|+++.|.+.|.+.++++|++..
T Consensus 12 ~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 12 EAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred HHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 78889999999999999999999999999999999999999999999998764
No 286
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=94.85 E-value=0.019 Score=55.08 Aligned_cols=49 Identities=27% Similarity=0.513 Sum_probs=42.2
Q ss_pred CCCcccccccccccccCcEEc-CCCCcccHhhHHHhccCCCCCCCCCccc
Q 011050 198 ERTDDFDCTLCLKLLYEPITT-PCGHSFCRSCLFQSMDRGNKCPLCRAVL 246 (494)
Q Consensus 198 ~~~~~~~C~iC~~~~~~Pv~~-~cgh~fc~~Cl~~~~~~~~~CP~Cr~~~ 246 (494)
...+.-.|++|+....+|..+ -.|..||..|+.....+...||++..++
T Consensus 296 l~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 296 LPPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred CCCccccChhHHhccCCCceEEecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 345667899999999999665 6799999999999999888999998765
No 287
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=94.84 E-value=0.055 Score=53.86 Aligned_cols=97 Identities=18% Similarity=0.107 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHhccC----CCC--cccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHH
Q 011050 48 FDLVQKGNRAFRESNFEEAISNYSRANNIK----PGD--PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAE 121 (494)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~----p~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (494)
.++...||.+.-.|+|+.|+++|.+++.+. ... +..-+.+|+.|.-+.++ +
T Consensus 236 RA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~-----------------------~ 292 (639)
T KOG1130|consen 236 RAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEV-----------------------Q 292 (639)
T ss_pred HhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHH-----------------------H
Confidence 355677888888999999999999887652 221 22334578889889999 9
Q ss_pred HHHHHHHHHhhcc------ccchHHHHHHHHHHHHHHHHHHHHHHHHccccC
Q 011050 122 LALKDAEKLLNLQ------SNSMKSHLLKANALILLERYDMARDAILSGLQV 167 (494)
Q Consensus 122 ~a~~~~~~al~l~------p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 167 (494)
+|+....+.+.+. -....++|.+|.+|-.+|..++|+......+++
T Consensus 293 kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 293 KAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 9999888876653 235679999999999999999999988877765
No 288
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=94.79 E-value=0.11 Score=49.83 Aligned_cols=56 Identities=14% Similarity=0.069 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHH
Q 011050 121 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQA 176 (494)
Q Consensus 121 ~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~ 176 (494)
++|...+..|+.++|++++++...|......++.-+|-..|-+||.++|.|.++..
T Consensus 133 ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALv 188 (472)
T KOG3824|consen 133 EKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALV 188 (472)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHh
Confidence 99999999999999999999999999999889999999999999999999987644
No 289
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.78 E-value=0.015 Score=57.25 Aligned_cols=45 Identities=27% Similarity=0.733 Sum_probs=36.7
Q ss_pred ccccccccccccCc-----EEcCCCCcccHhhHHHhccCC--CCCCCCCccc
Q 011050 202 DFDCTLCLKLLYEP-----ITTPCGHSFCRSCLFQSMDRG--NKCPLCRAVL 246 (494)
Q Consensus 202 ~~~C~iC~~~~~~P-----v~~~cgh~fc~~Cl~~~~~~~--~~CP~Cr~~~ 246 (494)
-.+||+|++-+.-| +.+.|||-|-.+|+++|+.+. ..||.|..+.
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~ka 55 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKA 55 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChh
Confidence 35899999877766 467999999999999999633 3599998764
No 290
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.74 E-value=0.0098 Score=44.11 Aligned_cols=44 Identities=23% Similarity=0.521 Sum_probs=30.5
Q ss_pred cccccccccccCc-EEc-CCCCcccHhhHHHhccCC---CCCCCCCccc
Q 011050 203 FDCTLCLKLLYEP-ITT-PCGHSFCRSCLFQSMDRG---NKCPLCRAVL 246 (494)
Q Consensus 203 ~~C~iC~~~~~~P-v~~-~cgh~fc~~Cl~~~~~~~---~~CP~Cr~~~ 246 (494)
..||-|.-.-.+- ... -|.|.|...||.+|+... ..||.||+..
T Consensus 32 g~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~ 80 (84)
T KOG1493|consen 32 GCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTW 80 (84)
T ss_pred CcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchhee
Confidence 3455555444332 222 699999999999998743 3599999875
No 291
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=94.69 E-value=0.2 Score=51.00 Aligned_cols=186 Identities=19% Similarity=0.214 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCc--------cc--ccChhHHHHH---HHhhhccCCCCCcccccc
Q 011050 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP--------IV--LGNRSSAYIR---ISQFLKHRPPSASEYRPL 111 (494)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~--------~~--~~~~a~~~~~---~~~~~~~~~~~~~~~~~~ 111 (494)
......+..|..++..|+|++|+..|...|..-|--. .+ +...+.-|+- +..-++..+.
T Consensus 202 ~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~-------- 273 (422)
T PF06957_consen 202 SSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPK-------- 273 (422)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-T--------
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------
Confidence 3455667789999999999999999999988644321 01 0111111111 1111111100
Q ss_pred CCCCCchhHHHHHH--HHHHHhhccccchHHHHHHHHH-HHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHhhhhhh
Q 011050 112 NGLDPTTHAELALK--DAEKLLNLQSNSMKSHLLKANA-LILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASL 188 (494)
Q Consensus 112 ~~~~~~~~~~~a~~--~~~~al~l~p~~~~a~~~~g~~-~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~ 188 (494)
++.+.....++ .|=...+|.|.+...-++.|.. .++.++|.-|....++.|+++|..+.+..+.+.+...-++.
T Consensus 274 ---~~~~~~kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a~qArKil~~~e~~~ 350 (422)
T PF06957_consen 274 ---DPVEDQKRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVAEQARKILQACERNP 350 (422)
T ss_dssp ---TTHHHHHHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHHHHHHHHHHHHCCS-
T ss_pred ---cchhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 00000011111 1222334556555444455544 46899999999999999999998766554444443322222
Q ss_pred hccccCCCCCCCcccccccccccccCcEEcCCCCcccHhhHHHhcc--CCCCCCCCCcc
Q 011050 189 IGRRIHGTPERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMD--RGNKCPLCRAV 245 (494)
Q Consensus 189 ~~~~~~~~~~~~~~~~C~iC~~~~~~Pv~~~cgh~fc~~Cl~~~~~--~~~~CP~Cr~~ 245 (494)
............+-..|...+. |+.-.-.+.-|..|-..... .|..||+|...
T Consensus 351 tDa~~i~yD~~npF~ICa~s~t----PIY~G~~~v~CP~cgA~y~~~~kG~lC~vC~l~ 405 (422)
T PF06957_consen 351 TDAHEIDYDERNPFDICAASYT----PIYRGSPSVKCPYCGAKYHPEYKGQLCPVCELS 405 (422)
T ss_dssp -BSS--S--TTS-EEEBTTT------EEETTS-EEE-TTT--EEEGGGTTSB-TTTTTB
T ss_pred CCceecCCCCCCCceeeecccc----cccCCCCCeeCCCCCCccChhhCCCCCCCCcce
Confidence 1111111111222224444443 33322222233333333222 46789999864
No 292
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.57 E-value=0.098 Score=49.21 Aligned_cols=99 Identities=17% Similarity=0.185 Sum_probs=80.6
Q ss_pred HHHHHHHHHhcChHHHHHHHHHHhc----cCC--CCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHH
Q 011050 51 VQKGNRAFRESNFEEAISNYSRANN----IKP--GDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 124 (494)
Q Consensus 51 ~~~g~~~~~~~~~~~Ai~~y~~al~----~~p--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 124 (494)
...|...++.||-+.|-..|+++-+ ++- ++-.++.|.|.+|.-.++| .+|.
T Consensus 216 s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~-----------------------a~a~ 272 (366)
T KOG2796|consen 216 SGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNF-----------------------AEAH 272 (366)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccch-----------------------HHHH
Confidence 4568888899999888888884432 222 2335566666667777788 8999
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCc
Q 011050 125 KDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSN 172 (494)
Q Consensus 125 ~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~ 172 (494)
..+.+.+..||.++.+....|.|+..+|+..+|++..+.++..+|...
T Consensus 273 r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 273 RFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred HHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 999999999999999999999999999999999999999999999654
No 293
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=94.57 E-value=0.027 Score=53.19 Aligned_cols=44 Identities=32% Similarity=0.810 Sum_probs=34.4
Q ss_pred ccccccc-cccCcE----EcCCCCcccHhhHHHhccCC-CCCCCCCcccc
Q 011050 204 DCTLCLK-LLYEPI----TTPCGHSFCRSCLFQSMDRG-NKCPLCRAVLF 247 (494)
Q Consensus 204 ~C~iC~~-~~~~Pv----~~~cgh~fc~~Cl~~~~~~~-~~CP~Cr~~~~ 247 (494)
.||.|.. .+.+|- +-+|||+.|.+|....+..| ..||.|...+.
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLR 51 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILR 51 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhh
Confidence 4888884 566772 23999999999999988755 46999998774
No 294
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=94.54 E-value=0.066 Score=31.90 Aligned_cols=32 Identities=25% Similarity=0.492 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHhccCCC
Q 011050 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPG 79 (494)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~ 79 (494)
..+...|..++..+++++|+..|.++++.+|.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 35678899999999999999999999999885
No 295
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=94.51 E-value=0.069 Score=37.59 Aligned_cols=42 Identities=17% Similarity=0.245 Sum_probs=33.5
Q ss_pred cccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHH
Q 011050 83 VLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANA 147 (494)
Q Consensus 83 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~a~~~~g~~ 147 (494)
.++.+|.+++++|+| .+|.+.++.+++.+|++.+|......+
T Consensus 3 ~lY~lAig~ykl~~Y-----------------------~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEY-----------------------EKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHTT-H-----------------------HHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhH-----------------------HHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 356688999999999 999999999999999998876544433
No 296
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=94.51 E-value=0.036 Score=51.33 Aligned_cols=59 Identities=14% Similarity=0.106 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHH
Q 011050 121 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQ 179 (494)
Q Consensus 121 ~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~ 179 (494)
+.|+.-|.+||-++|..+..|.+++.+|.++.+++.+..+..+|++++|+....+-++.
T Consensus 27 ~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg 85 (284)
T KOG4642|consen 27 DDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLG 85 (284)
T ss_pred chHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998765554443
No 297
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.44 E-value=0.15 Score=53.44 Aligned_cols=96 Identities=13% Similarity=0.136 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHhccCCCC------cccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHH
Q 011050 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGD------PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAE 121 (494)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (494)
.-++..|...|+..+|..|+..|...+..-|.| .....+++.||..+.+. +
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QL-----------------------D 411 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQL-----------------------D 411 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHH-----------------------H
Confidence 356789999999999999999999999887654 47778899999999999 9
Q ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHcccc
Q 011050 122 LALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQ 166 (494)
Q Consensus 122 ~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~ 166 (494)
.|++.+..|-+.||.++-.-+..-.+...-+.-++|+....+...
T Consensus 412 ~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 412 NAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKS 456 (872)
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 999999999999999988877777777777888888877666544
No 298
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.44 E-value=0.2 Score=48.73 Aligned_cols=107 Identities=16% Similarity=0.077 Sum_probs=86.4
Q ss_pred HHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHh
Q 011050 52 QKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLL 131 (494)
Q Consensus 52 ~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al 131 (494)
.++...+.+|++-+|.....+.++-.|.|..++-.--.+++.+|+. ......+++.+
T Consensus 108 ~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~-----------------------~~~k~ai~kIi 164 (491)
T KOG2610|consen 108 AKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQ-----------------------IGKKNAIEKII 164 (491)
T ss_pred hhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccch-----------------------hhhhhHHHHhc
Confidence 3555678889999999999999999999998887777888889988 67777788888
Q ss_pred hc-cccch---HHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHH
Q 011050 132 NL-QSNSM---KSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (494)
Q Consensus 132 ~l-~p~~~---~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 181 (494)
.. +++.| ..+=..+..+...|-|++|-+..++|+++||++.-+..+..-+
T Consensus 165 p~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHV 218 (491)
T KOG2610|consen 165 PKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHV 218 (491)
T ss_pred cccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHH
Confidence 77 66653 3444456678899999999999999999999988766655444
No 299
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=94.44 E-value=0.32 Score=48.37 Aligned_cols=116 Identities=14% Similarity=0.103 Sum_probs=97.4
Q ss_pred hhHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHH
Q 011050 42 DRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAE 121 (494)
Q Consensus 42 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (494)
.+.+.+.....+|..-+..|+|.+|.....++-+..+.....|..-|.+--++|++ +
T Consensus 79 rKrrra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~-----------------------~ 135 (400)
T COG3071 79 RKRRRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDE-----------------------D 135 (400)
T ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccH-----------------------H
Confidence 34556777888898889999999999999998888888778888778888889999 9
Q ss_pred HHHHHHHHHhhccc-cchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHH
Q 011050 122 LALKDAEKLLNLQS-NSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQN 180 (494)
Q Consensus 122 ~a~~~~~~al~l~p-~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~ 180 (494)
.|-....++-++.+ +.-..+..++..+...|+++.|.....+++++.|.++.+......
T Consensus 136 ~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r 195 (400)
T COG3071 136 RANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALR 195 (400)
T ss_pred HHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHH
Confidence 99999999999833 345677788899999999999999999999999999987655443
No 300
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=94.27 E-value=0.021 Score=44.99 Aligned_cols=28 Identities=29% Similarity=0.603 Sum_probs=25.7
Q ss_pred CCCCcccHhhHHHhccCCCCCCCCCccc
Q 011050 219 PCGHSFCRSCLFQSMDRGNKCPLCRAVL 246 (494)
Q Consensus 219 ~cgh~fc~~Cl~~~~~~~~~CP~Cr~~~ 246 (494)
.|.|.|+..||.+|+.....||+|.++-
T Consensus 80 ~CNHaFH~hCisrWlktr~vCPLdn~eW 107 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKTRNVCPLDNKEW 107 (114)
T ss_pred ecchHHHHHHHHHHHhhcCcCCCcCcce
Confidence 5999999999999999999999998763
No 301
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.24 E-value=0.052 Score=34.79 Aligned_cols=27 Identities=26% Similarity=0.394 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHhcc
Q 011050 50 LVQKGNRAFRESNFEEAISNYSRANNI 76 (494)
Q Consensus 50 ~~~~g~~~~~~~~~~~Ai~~y~~al~~ 76 (494)
+...|+.+.+.|+|++|+.+|.+++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 567899999999999999999997654
No 302
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.22 E-value=0.022 Score=55.77 Aligned_cols=45 Identities=29% Similarity=0.704 Sum_probs=33.3
Q ss_pred ccccccccccccCcE---Ec-CCCCcccHhhHHHhccCC---CCCCCCCccc
Q 011050 202 DFDCTLCLKLLYEPI---TT-PCGHSFCRSCLFQSMDRG---NKCPLCRAVL 246 (494)
Q Consensus 202 ~~~C~iC~~~~~~Pv---~~-~cgh~fc~~Cl~~~~~~~---~~CP~Cr~~~ 246 (494)
...|.||.+.+.+-- .+ .|||+|+-.|+..|+... ..||.|+..+
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~ 55 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKL 55 (465)
T ss_pred cceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecc
Confidence 457999976655432 23 499999999999999743 3699999443
No 303
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.18 E-value=0.11 Score=52.91 Aligned_cols=111 Identities=15% Similarity=0.052 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHH-hccCCC--------CcccccChhHHHHHHHhhhccCCCCCccccccCCCCCc
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRA-NNIKPG--------DPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPT 117 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~a-l~~~p~--------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (494)
+..++.+.+.+|-.|+|.+|....... +...|. .-.++.|+|-++++++.|
T Consensus 240 ~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y-------------------- 299 (696)
T KOG2471|consen 240 SMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCY-------------------- 299 (696)
T ss_pred cHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhH--------------------
Confidence 456778889999999999998876553 333443 236789999999999999
Q ss_pred hhHHHHHHHHHHHhh-c-----------------cccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHH
Q 011050 118 THAELALKDAEKLLN-L-----------------QSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQ 179 (494)
Q Consensus 118 ~~~~~a~~~~~~al~-l-----------------~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~ 179 (494)
..+...+.+|++ . .......+|+.|..|...|++..|.+.|.++.+..-.|+.+|..+.
T Consensus 300 ---~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlA 376 (696)
T KOG2471|consen 300 ---QASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLA 376 (696)
T ss_pred ---HHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 888888888885 1 1235668999999999999999999999999998888998887665
Q ss_pred H
Q 011050 180 N 180 (494)
Q Consensus 180 ~ 180 (494)
+
T Consensus 377 E 377 (696)
T KOG2471|consen 377 E 377 (696)
T ss_pred H
Confidence 4
No 304
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=94.08 E-value=0.061 Score=58.42 Aligned_cols=43 Identities=44% Similarity=0.982 Sum_probs=37.5
Q ss_pred cccccccccccCcEEcCCCCcccHhhHHHhccCC--CCCCCCCccc
Q 011050 203 FDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRG--NKCPLCRAVL 246 (494)
Q Consensus 203 ~~C~iC~~~~~~Pv~~~cgh~fc~~Cl~~~~~~~--~~CP~Cr~~~ 246 (494)
+.|.+|.+ ...++.++|||.||..|+...+... ..||.||..+
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l 499 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVL 499 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHH
Confidence 88999999 8888999999999999999987643 3699999865
No 305
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.07 E-value=0.15 Score=53.56 Aligned_cols=97 Identities=21% Similarity=0.173 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCC----CcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHH
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPG----DPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAEL 122 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (494)
+--++.+|..+..+|+.++|+..|++++..... .+..++.+|.+++.+.+| .+
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w-----------------------~~ 323 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDW-----------------------EE 323 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchH-----------------------HH
Confidence 344677899999999999999999999864332 357888899999999999 99
Q ss_pred HHHHHHHHhhccccchHHHH--HHHHHHHHHHHH-------HHHHHHHHccccC
Q 011050 123 ALKDAEKLLNLQSNSMKSHL--LKANALILLERY-------DMARDAILSGLQV 167 (494)
Q Consensus 123 a~~~~~~al~l~p~~~~a~~--~~g~~~~~~~~~-------~~A~~~~~~al~l 167 (494)
|...+.+.++.+ ++.+++| ..|.+|..+++. ++|.+.+.++-.+
T Consensus 324 A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 324 AAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 999999999864 4555544 446678888888 6777777666443
No 306
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.00 E-value=0.43 Score=44.26 Aligned_cols=116 Identities=18% Similarity=0.167 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHh-cChHHHHHHHHHHhccCCCC-c-----ccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhH
Q 011050 48 FDLVQKGNRAFRE-SNFEEAISNYSRANNIKPGD-P-----IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHA 120 (494)
Q Consensus 48 ~~~~~~g~~~~~~-~~~~~Ai~~y~~al~~~p~~-~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (494)
+..++-|..|-.. .++++||.+|.+|-+.-..+ + .++...|..-..+++|
T Consensus 114 k~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY----------------------- 170 (288)
T KOG1586|consen 114 KHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQY----------------------- 170 (288)
T ss_pred hhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHH-----------------------
Confidence 3445566666555 78999999999997763322 2 3444445555667778
Q ss_pred HHHHHHHHHHhhcccc------chHHHHHH-HHHHHHHHHHHHHHHHHHccccCCCCCchhHH--HHHHHHhhhh
Q 011050 121 ELALKDAEKLLNLQSN------SMKSHLLK-ANALILLERYDMARDAILSGLQVDPFSNPLQA--SLQNLERTTA 186 (494)
Q Consensus 121 ~~a~~~~~~al~l~p~------~~~a~~~~-g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~--~~~~~~~~~~ 186 (494)
.+|++.|+++....-+ .++.||.. |.|+....+.-.+...+++...++|.+...++ .++.+..++.
T Consensus 171 ~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~aie 245 (288)
T KOG1586|consen 171 SKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLLDAIE 245 (288)
T ss_pred HHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHh
Confidence 8888888887654322 34566655 55676768888888999999999998877654 3444444443
No 307
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=93.99 E-value=0.044 Score=37.39 Aligned_cols=41 Identities=37% Similarity=0.915 Sum_probs=21.4
Q ss_pred cccccccccCc----EEcCCCCcccHhhHHHhcc-CCCCCCCCCcc
Q 011050 205 CTLCLKLLYEP----ITTPCGHSFCRSCLFQSMD-RGNKCPLCRAV 245 (494)
Q Consensus 205 C~iC~~~~~~P----v~~~cgh~fc~~Cl~~~~~-~~~~CP~Cr~~ 245 (494)
|++|.+.+..- ..=+||+.+|+.|...... .+..||-||.+
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~ 46 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREP 46 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCC
Confidence 67888777322 1127999999999998886 46789999975
No 308
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=93.97 E-value=0.13 Score=56.97 Aligned_cols=42 Identities=21% Similarity=0.169 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 011050 121 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAIL 162 (494)
Q Consensus 121 ~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~ 162 (494)
+.|...++++++++|++...|..++++|...|++++|.+.++
T Consensus 511 ~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~ 552 (697)
T PLN03081 511 ELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVE 552 (697)
T ss_pred HHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHH
Confidence 444444444555555444445555555555555555544443
No 309
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=93.79 E-value=0.15 Score=55.40 Aligned_cols=91 Identities=19% Similarity=0.136 Sum_probs=48.2
Q ss_pred HHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhcccc
Q 011050 57 AFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSN 136 (494)
Q Consensus 57 ~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~ 136 (494)
....++|.+|++...+.++..|+...+..--|..++++|++ ++|..-.+..-..-++
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~-----------------------~ea~~~Le~~~~~~~~ 75 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKG-----------------------DEALKLLEALYGLKGT 75 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCc-----------------------hhHHHHHhhhccCCCC
Confidence 34445555555555555555555555555555555555555 5555333333333344
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHccccCCCC
Q 011050 137 SMKSHLLKANALILLERYDMARDAILSGLQVDPF 170 (494)
Q Consensus 137 ~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~ 170 (494)
+...+-.+-.+|..++++++|...|+++.+.+|.
T Consensus 76 D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~ 109 (932)
T KOG2053|consen 76 DDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS 109 (932)
T ss_pred chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc
Confidence 4444445555555555555555555555555555
No 310
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=93.54 E-value=0.13 Score=44.54 Aligned_cols=62 Identities=19% Similarity=0.129 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHH
Q 011050 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDA 127 (494)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 127 (494)
..+...+..+...|++++|+..+.+++..+|.+-.+|..+-.+|...|+. .+|++.|
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~-----------------------~~A~~~Y 119 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRR-----------------------AEALRVY 119 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-H-----------------------HHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCH-----------------------HHHHHHH
Confidence 34556677788899999999999999999999999999999999999999 8998888
Q ss_pred HHHhh
Q 011050 128 EKLLN 132 (494)
Q Consensus 128 ~~al~ 132 (494)
++..+
T Consensus 120 ~~~~~ 124 (146)
T PF03704_consen 120 ERYRR 124 (146)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87644
No 311
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.54 E-value=0.55 Score=44.37 Aligned_cols=67 Identities=16% Similarity=0.287 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHH
Q 011050 49 DLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAE 128 (494)
Q Consensus 49 ~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 128 (494)
-...++..+..+.||.+|...|++.+..||.++.+-.|.|.|.+.+|+. ..|++..+
T Consensus 254 V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l-----------------------~DAiK~~e 310 (366)
T KOG2796|consen 254 VLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKL-----------------------KDALKQLE 310 (366)
T ss_pred HHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHH-----------------------HHHHHHHH
Confidence 3456677778899999999999999999999999999999999999999 99999999
Q ss_pred HHhhccccch
Q 011050 129 KLLNLQSNSM 138 (494)
Q Consensus 129 ~al~l~p~~~ 138 (494)
.+++.+|...
T Consensus 311 ~~~~~~P~~~ 320 (366)
T KOG2796|consen 311 AMVQQDPRHY 320 (366)
T ss_pred HHhccCCccc
Confidence 9999999653
No 312
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=93.49 E-value=0.29 Score=50.11 Aligned_cols=91 Identities=20% Similarity=0.144 Sum_probs=75.8
Q ss_pred HHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhccccchHHHHHH
Q 011050 65 EAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLK 144 (494)
Q Consensus 65 ~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~a~~~~ 144 (494)
+-+..|.+|+..-+.|..+|.+...--.+.+.+ .+.-..+.+++..+|+++..|..-
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~-----------------------~~v~ki~~~~l~~Hp~~~dLWI~a 145 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTY-----------------------GEVKKIFAAMLAKHPNNPDLWIYA 145 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcch-----------------------hHHHHHHHHHHHhCCCCchhHHhh
Confidence 456679999999999999999876555555557 788889999999999999999888
Q ss_pred HHHHHHHHH-HHHHHHHHHccccCCCCCchhHHHH
Q 011050 145 ANALILLER-YDMARDAILSGLQVDPFSNPLQASL 178 (494)
Q Consensus 145 g~~~~~~~~-~~~A~~~~~~al~l~p~~~~~~~~~ 178 (494)
|.=.+.-+. .+.|.+.+.++|+++|+++.++...
T Consensus 146 A~wefe~n~ni~saRalflrgLR~npdsp~Lw~ey 180 (568)
T KOG2396|consen 146 AKWEFEINLNIESARALFLRGLRFNPDSPKLWKEY 180 (568)
T ss_pred hhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHH
Confidence 876555444 9999999999999999999887654
No 313
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.42 E-value=0.062 Score=52.89 Aligned_cols=64 Identities=23% Similarity=0.551 Sum_probs=45.2
Q ss_pred cccccccccccc------CcEEcCCCCcccHhhHHHhccCCC-CCCCCCcccccC---CCCCcccccHHHHHHH
Q 011050 202 DFDCTLCLKLLY------EPITTPCGHSFCRSCLFQSMDRGN-KCPLCRAVLFIT---PRTCAVSVTLNSIIQK 265 (494)
Q Consensus 202 ~~~C~iC~~~~~------~Pv~~~cgh~fc~~Cl~~~~~~~~-~CP~Cr~~~~~~---~~~~~~~~~l~~~~~~ 265 (494)
...|.+|.+.++ .|..+.|||++|..|+.....++. .||.||.+.... .+.+..|..+..+++.
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~ 76 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEH 76 (296)
T ss_pred CCceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHH
Confidence 356888887655 456678999999999999887654 699999984211 1345566666665554
No 314
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=93.42 E-value=0.12 Score=31.83 Aligned_cols=32 Identities=19% Similarity=0.346 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHhccCCCC
Q 011050 49 DLVQKGNRAFRESNFEEAISNYSRANNIKPGD 80 (494)
Q Consensus 49 ~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~ 80 (494)
.++..|..+++.|++++|+..|++.+...|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 56789999999999999999999999998863
No 315
>PLN03077 Protein ECB2; Provisional
Probab=93.08 E-value=0.37 Score=54.88 Aligned_cols=88 Identities=20% Similarity=0.178 Sum_probs=54.5
Q ss_pred HHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHH
Q 011050 51 VQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKL 130 (494)
Q Consensus 51 ~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a 130 (494)
......+.+.|++++|...+.+. ...|+ +..|..+-.++..-++. +.+...++++
T Consensus 629 ~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~-----------------------e~~e~~a~~l 683 (857)
T PLN03077 629 ACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHV-----------------------ELGELAAQHI 683 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCCh-----------------------HHHHHHHHHH
Confidence 33444455556666666665553 23343 33333333333333344 6666777788
Q ss_pred hhccccchHHHHHHHHHHHHHHHHHHHHHHHHc
Q 011050 131 LNLQSNSMKSHLLKANALILLERYDMARDAILS 163 (494)
Q Consensus 131 l~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~ 163 (494)
++++|++...|..++++|...|++++|....+.
T Consensus 684 ~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~ 716 (857)
T PLN03077 684 FELDPNSVGYYILLCNLYADAGKWDEVARVRKT 716 (857)
T ss_pred HhhCCCCcchHHHHHHHHHHCCChHHHHHHHHH
Confidence 888888888888888888888888888776543
No 316
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.01 E-value=0.043 Score=57.07 Aligned_cols=39 Identities=33% Similarity=0.891 Sum_probs=30.7
Q ss_pred Cccccccccccccc----CcEEcCCCCcccHhhHHHhccCCCCCC
Q 011050 200 TDDFDCTLCLKLLY----EPITTPCGHSFCRSCLFQSMDRGNKCP 240 (494)
Q Consensus 200 ~~~~~C~iC~~~~~----~Pv~~~cgh~fc~~Cl~~~~~~~~~CP 240 (494)
.+-+.|+||+..|. .|+.+-|||+.|+.|+...... .||
T Consensus 9 ~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~--scp 51 (861)
T KOG3161|consen 9 VLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNA--SCP 51 (861)
T ss_pred HHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhc--cCC
Confidence 34568999977654 6899999999999999877655 455
No 317
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=92.87 E-value=0.43 Score=36.35 Aligned_cols=53 Identities=15% Similarity=0.277 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCc---ccccChhHHHHHHHhh
Q 011050 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP---IVLGNRSSAYIRISQF 97 (494)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~---~~~~~~a~~~~~~~~~ 97 (494)
+.++...++|..+|.+.+.++|+....+|++..++.. .++..++.+|...|+|
T Consensus 4 ~~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gky 59 (80)
T PF10579_consen 4 DQAKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKY 59 (80)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHH
Confidence 3467889999999999999999999999999988766 4455567889999999
No 318
>PF04641 Rtf2: Rtf2 RING-finger
Probab=92.78 E-value=0.096 Score=50.42 Aligned_cols=49 Identities=24% Similarity=0.539 Sum_probs=38.6
Q ss_pred CCCcccccccccccccCc---EE-cCCCCcccHhhHHHhccCCCCCCCCCcccc
Q 011050 198 ERTDDFDCTLCLKLLYEP---IT-TPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 247 (494)
Q Consensus 198 ~~~~~~~C~iC~~~~~~P---v~-~~cgh~fc~~Cl~~~~~~~~~CP~Cr~~~~ 247 (494)
.....|.||++...|..- |. .+|||.|+..||...- .+..||+|..++.
T Consensus 109 ~~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~ 161 (260)
T PF04641_consen 109 NSEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFT 161 (260)
T ss_pred cCCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccc
Confidence 345789999999888432 23 3999999999998874 4567999999874
No 319
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.75 E-value=0.42 Score=46.60 Aligned_cols=100 Identities=14% Similarity=0.076 Sum_probs=80.9
Q ss_pred hhHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcc-CCCC---cccccChhHHHHHHHhhhccCCCCCccccccCCCCCc
Q 011050 42 DRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNI-KPGD---PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPT 117 (494)
Q Consensus 42 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~-~p~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (494)
+.+.+.-+++-.-..+|-.|+...-...+.+.+-. +|+- +.+.-.+|-++...|-|
T Consensus 132 d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y-------------------- 191 (491)
T KOG2610|consen 132 DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY-------------------- 191 (491)
T ss_pred hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc--------------------
Confidence 33445556666667788889888888888888876 6654 35555677788888889
Q ss_pred hhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 011050 118 THAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSG 164 (494)
Q Consensus 118 ~~~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~a 164 (494)
++|.+.+++++++|+.+..|...++.++...|++.++++...+-
T Consensus 192 ---~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 192 ---DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred ---hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 99999999999999999999999999999999999999876543
No 320
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.70 E-value=2.4 Score=42.31 Aligned_cols=48 Identities=25% Similarity=0.519 Sum_probs=37.5
Q ss_pred CCccccccccccccc--C-cEEcCCCCcccHhhHHHhccCCC---CCCCCCccc
Q 011050 199 RTDDFDCTLCLKLLY--E-PITTPCGHSFCRSCLFQSMDRGN---KCPLCRAVL 246 (494)
Q Consensus 199 ~~~~~~C~iC~~~~~--~-Pv~~~cgh~fc~~Cl~~~~~~~~---~CP~Cr~~~ 246 (494)
....|.||+-.+.-. + |+.+.|||..|+..+.+...+|. +||.|-...
T Consensus 331 fHSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~ 384 (394)
T KOG2817|consen 331 FHSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQ 384 (394)
T ss_pred ccceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCccc
Confidence 446689999887544 3 57899999999999998777664 699996543
No 321
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=92.63 E-value=0.14 Score=49.35 Aligned_cols=91 Identities=15% Similarity=0.131 Sum_probs=76.2
Q ss_pred HHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhccccchHHHHH-H
Q 011050 66 AISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLL-K 144 (494)
Q Consensus 66 Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~a~~~-~ 144 (494)
-+..|.++...-|+|+.+|...+.--.+.+-| .+.-..+..+++++|.+++.|.. -
T Consensus 92 ~~f~~~R~tnkff~D~k~w~~y~~Y~~k~k~y-----------------------~~~~nI~~~~l~khP~nvdlWI~~c 148 (435)
T COG5191 92 KIFELYRSTNKFFNDPKIWSQYAAYVIKKKMY-----------------------GEMKNIFAECLTKHPLNVDLWIYCC 148 (435)
T ss_pred eeEeeehhhhcCCCCcHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHhcCCCCceeeeeec
Confidence 33456677777889999999888777778888 88888999999999999998877 4
Q ss_pred HHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHH
Q 011050 145 ANALILLERYDMARDAILSGLQVDPFSNPLQASLQ 179 (494)
Q Consensus 145 g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~ 179 (494)
+.-|...++++.|.+.+.+++++||+++.+|-..=
T Consensus 149 ~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyf 183 (435)
T COG5191 149 AFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYF 183 (435)
T ss_pred cchhhhhccHHHHHHHHHhhhccCCCCchHHHHHH
Confidence 45578899999999999999999999998876543
No 322
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=92.47 E-value=0.076 Score=50.28 Aligned_cols=49 Identities=27% Similarity=0.655 Sum_probs=36.3
Q ss_pred CCCccccccccccccc-Cc--EEcCCCCcccHhhHHHhccC-----------------------CCCCCCCCccc
Q 011050 198 ERTDDFDCTLCLKLLY-EP--ITTPCGHSFCRSCLFQSMDR-----------------------GNKCPLCRAVL 246 (494)
Q Consensus 198 ~~~~~~~C~iC~~~~~-~P--v~~~cgh~fc~~Cl~~~~~~-----------------------~~~CP~Cr~~~ 246 (494)
...+...|.||+.-|. .| +.++|-|.|+..||.+++.. ...||+||..+
T Consensus 111 nn~p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i 185 (368)
T KOG4445|consen 111 NNHPNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERI 185 (368)
T ss_pred CCCCCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhc
Confidence 3447889999997554 44 35799999999999865431 13599999876
No 323
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.44 E-value=0.11 Score=47.81 Aligned_cols=48 Identities=17% Similarity=0.355 Sum_probs=41.8
Q ss_pred CcccccccccccccCcEE----cCCCCcccHhhHHHhccCCCCCCCCCcccc
Q 011050 200 TDDFDCTLCLKLLYEPIT----TPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 247 (494)
Q Consensus 200 ~~~~~C~iC~~~~~~Pv~----~~cgh~fc~~Cl~~~~~~~~~CP~Cr~~~~ 247 (494)
...+.||+|...+.+.+. -||||.+|..|.+........||+|..++.
T Consensus 219 s~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plk 270 (303)
T KOG3039|consen 219 SKRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLK 270 (303)
T ss_pred ccceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCc
Confidence 367899999999998743 499999999999998888889999999874
No 324
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=92.36 E-value=0.14 Score=47.17 Aligned_cols=61 Identities=16% Similarity=0.118 Sum_probs=55.6
Q ss_pred HHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhcc
Q 011050 55 NRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQ 134 (494)
Q Consensus 55 ~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~ 134 (494)
...++.+|.+.|.+.|.+|+++.|....-|+..+....+.|++ +.|.+.+++.+++|
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~-----------------------daAa~a~~~~L~ld 59 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEF-----------------------DAAAAAYEEVLELD 59 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccH-----------------------HHHHHHHHHHHcCC
Confidence 3456789999999999999999999999999999999999999 99999999999999
Q ss_pred ccch
Q 011050 135 SNSM 138 (494)
Q Consensus 135 p~~~ 138 (494)
|...
T Consensus 60 p~D~ 63 (287)
T COG4976 60 PEDH 63 (287)
T ss_pred cccc
Confidence 9763
No 325
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=92.26 E-value=0.22 Score=47.39 Aligned_cols=61 Identities=23% Similarity=0.161 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHH
Q 011050 121 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (494)
Q Consensus 121 ~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 181 (494)
..|+....+.+.++|+++..+..+|.+|.++|.+..|+.++...++.-|+.+.+.-....+
T Consensus 198 ~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l 258 (269)
T COG2912 198 ELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQL 258 (269)
T ss_pred HHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988764443333
No 326
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.12 E-value=0.085 Score=49.82 Aligned_cols=41 Identities=29% Similarity=0.782 Sum_probs=32.8
Q ss_pred ccccccccccccCcEEcCCCCcc-cHhhHHHhccCCCCCCCCCccc
Q 011050 202 DFDCTLCLKLLYEPITTPCGHSF-CRSCLFQSMDRGNKCPLCRAVL 246 (494)
Q Consensus 202 ~~~C~iC~~~~~~Pv~~~cgh~f-c~~Cl~~~~~~~~~CP~Cr~~~ 246 (494)
...|.||++.-.+.+.++|||.. |-.|-.. -..||+||+.+
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkr----m~eCPICRqyi 341 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKR----MNECPICRQYI 341 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhccc----cccCchHHHHH
Confidence 67899999999999999999964 6666322 23799999865
No 327
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=91.93 E-value=0.87 Score=44.35 Aligned_cols=100 Identities=19% Similarity=0.011 Sum_probs=75.9
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHH-hhhccCCCCCccccccCCCCCchhHHHHHHHHH
Q 011050 50 LVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRIS-QFLKHRPPSASEYRPLNGLDPTTHAELALKDAE 128 (494)
Q Consensus 50 ~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 128 (494)
|....+..-+.+..+.|-..|.+|.+..+-...+|...|..-+..+ +. ..|...++
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~-----------------------~~A~~Ife 60 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDP-----------------------KRARKIFE 60 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-H-----------------------HHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCH-----------------------HHHHHHHH
Confidence 3344444555566788999999999776667788887777766643 44 55999999
Q ss_pred HHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCc
Q 011050 129 KLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSN 172 (494)
Q Consensus 129 ~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~ 172 (494)
.+++.-|.+...|.....-+...++.+.|...|++++..-|...
T Consensus 61 ~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~ 104 (280)
T PF05843_consen 61 RGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEK 104 (280)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchh
Confidence 99999999988888888888899999999999999999877655
No 328
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=91.80 E-value=0.12 Score=49.79 Aligned_cols=47 Identities=28% Similarity=0.781 Sum_probs=38.6
Q ss_pred CCcccccccccccccCcEEcCCCCcccHhhHHHhcc--CCCCCCCCCcc
Q 011050 199 RTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMD--RGNKCPLCRAV 245 (494)
Q Consensus 199 ~~~~~~C~iC~~~~~~Pv~~~cgh~fc~~Cl~~~~~--~~~~CP~Cr~~ 245 (494)
..+.-.|.||-+-+.--..+||||..|.-|...... ....||.||.+
T Consensus 58 DEen~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE 106 (493)
T COG5236 58 DEENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTE 106 (493)
T ss_pred ccccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCccccc
Confidence 445678999998877777899999999999877544 56789999986
No 329
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.71 E-value=0.22 Score=45.23 Aligned_cols=48 Identities=29% Similarity=0.587 Sum_probs=38.9
Q ss_pred cccccccccccccCc--EEcCCCCcccHhhHHHhcc--------CCCCCCCCCccccc
Q 011050 201 DDFDCTLCLKLLYEP--ITTPCGHSFCRSCLFQSMD--------RGNKCPLCRAVLFI 248 (494)
Q Consensus 201 ~~~~C~iC~~~~~~P--v~~~cgh~fc~~Cl~~~~~--------~~~~CP~Cr~~~~~ 248 (494)
.+-.|.+|.-.+.+- +.+.|-|.|++.|+..+-. .|..||.|..+++.
T Consensus 49 Y~pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFP 106 (299)
T KOG3970|consen 49 YNPNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFP 106 (299)
T ss_pred CCCCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCC
Confidence 456799999877654 6689999999999988754 25789999999864
No 330
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=91.71 E-value=0.6 Score=44.52 Aligned_cols=73 Identities=21% Similarity=0.359 Sum_probs=65.3
Q ss_pred HHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhh
Q 011050 53 KGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLN 132 (494)
Q Consensus 53 ~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~ 132 (494)
.-..+...++++.|...-.+.+.++|.++.-+.-||.+|.++|-+ .-|+.|+...++
T Consensus 187 lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~-----------------------~vAl~dl~~~~~ 243 (269)
T COG2912 187 LKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCY-----------------------HVALEDLSYFVE 243 (269)
T ss_pred HHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCc-----------------------hhhHHHHHHHHH
Confidence 345567889999999999999999999999999999999999999 999999999999
Q ss_pred ccccchHHHHHHHHHH
Q 011050 133 LQSNSMKSHLLKANAL 148 (494)
Q Consensus 133 l~p~~~~a~~~~g~~~ 148 (494)
..|+.+.+-..++...
T Consensus 244 ~~P~~~~a~~ir~~l~ 259 (269)
T COG2912 244 HCPDDPIAEMIRAQLL 259 (269)
T ss_pred hCCCchHHHHHHHHHH
Confidence 9999988876666554
No 331
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=91.70 E-value=0.99 Score=49.44 Aligned_cols=141 Identities=15% Similarity=0.044 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHH
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (494)
..+..-+|..+++.|++++|..+....-...++|-..+.-+..||..++++ ++|...
T Consensus 43 ~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~-----------------------d~~~~~ 99 (932)
T KOG2053|consen 43 LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKL-----------------------DEAVHL 99 (932)
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhh-----------------------hHHHHH
Confidence 345567899999999999999877777777788888888888999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCch-hHHHHHHHHhhhhhhhccccCCCCCCCccccc
Q 011050 127 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNP-LQASLQNLERTTASLIGRRIHGTPERTDDFDC 205 (494)
Q Consensus 127 ~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C 205 (494)
|+++++.+|. .+..+.+-.+|..-+.|.+=-+.-.+..+.-|.++- .|..+..+-..+........ ...-.+.|
T Consensus 100 Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~----~i~l~LA~ 174 (932)
T KOG2053|consen 100 YERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLD----PILLALAE 174 (932)
T ss_pred HHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCccccc----chhHHHHH
Confidence 9999999998 777777777777777776644444444446677663 45555544433333222111 23334455
Q ss_pred ccccccccCc
Q 011050 206 TLCLKLLYEP 215 (494)
Q Consensus 206 ~iC~~~~~~P 215 (494)
..|...+..+
T Consensus 175 ~m~~~~l~~~ 184 (932)
T KOG2053|consen 175 KMVQKLLEKK 184 (932)
T ss_pred HHHHHHhccC
Confidence 5566555555
No 332
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=91.62 E-value=0.34 Score=39.58 Aligned_cols=32 Identities=34% Similarity=0.703 Sum_probs=25.9
Q ss_pred CCcccccccccccccCcE--EcCCCCcccHhhHH
Q 011050 199 RTDDFDCTLCLKLLYEPI--TTPCGHSFCRSCLF 230 (494)
Q Consensus 199 ~~~~~~C~iC~~~~~~Pv--~~~cgh~fc~~Cl~ 230 (494)
..+.-.|++|...+.+.+ .+||||.|+..|+.
T Consensus 75 i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 75 ITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred ECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 445667999999888764 47999999999974
No 333
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.60 E-value=1.1 Score=41.92 Aligned_cols=110 Identities=15% Similarity=-0.001 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCc------ccccChhHHHHHHHhhhccCCCCCccccccCCCCCchh
Q 011050 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP------IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTH 119 (494)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (494)
.+..+...++.|-..++|++|..+..+|.+..-++. .+|..-|+..-.+..+
T Consensus 30 aas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~kl---------------------- 87 (308)
T KOG1585|consen 30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKL---------------------- 87 (308)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHh----------------------
Confidence 355566667777778999999999999996544443 3444445555556667
Q ss_pred HHHHHHHHHHHhhcc-----ccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHH
Q 011050 120 AELALKDAEKLLNLQ-----SNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASL 178 (494)
Q Consensus 120 ~~~a~~~~~~al~l~-----p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~ 178 (494)
.++...+++|..+- |+-...-..+|.-.....++++|+..|++++.+--.+...+.+.
T Consensus 88 -sEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~ 150 (308)
T KOG1585|consen 88 -SEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAF 150 (308)
T ss_pred -HHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHH
Confidence 88999999988762 43333333333334567788999999999988766555444333
No 334
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=91.51 E-value=0.21 Score=41.69 Aligned_cols=47 Identities=23% Similarity=0.576 Sum_probs=39.4
Q ss_pred cccccccccccccCcEEc----CCCCcccHhhHHHhccC---CCCCCCCCcccc
Q 011050 201 DDFDCTLCLKLLYEPITT----PCGHSFCRSCLFQSMDR---GNKCPLCRAVLF 247 (494)
Q Consensus 201 ~~~~C~iC~~~~~~Pv~~----~cgh~fc~~Cl~~~~~~---~~~CP~Cr~~~~ 247 (494)
..++|.||.+...+.-.+ =||.+.|..|-...|.. ...||.|+..+.
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFK 132 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFK 132 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccc
Confidence 678999999998888655 29999999999887764 357999998864
No 335
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=91.39 E-value=1.1 Score=45.78 Aligned_cols=100 Identities=10% Similarity=0.023 Sum_probs=87.1
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHH
Q 011050 50 LVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEK 129 (494)
Q Consensus 50 ~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 129 (494)
|..-|.=--.+++++.|-+.|.+||..+-.+..+|...|.+-++.... ..|-...++
T Consensus 76 WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~v-----------------------NhARNv~dR 132 (677)
T KOG1915|consen 76 WIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQV-----------------------NHARNVWDR 132 (677)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhH-----------------------hHHHHHHHH
Confidence 444444455778999999999999999999999999999999999998 999999999
Q ss_pred HhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCc
Q 011050 130 LLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSN 172 (494)
Q Consensus 130 al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~ 172 (494)
|+.+-|.-.+.||..-..=..+|+..-|...|++=+...|+..
T Consensus 133 Avt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eq 175 (677)
T KOG1915|consen 133 AVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQ 175 (677)
T ss_pred HHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHH
Confidence 9999998888888776666788999999999999999999755
No 336
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.39 E-value=1.5 Score=39.48 Aligned_cols=96 Identities=19% Similarity=0.160 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCC---cccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHH
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD---PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 123 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 123 (494)
...+...|+-|.+.||+++|+..|.++.+..... ...+.+...+.+..++| ..+
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~-----------------------~~v 92 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDW-----------------------SHV 92 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCH-----------------------HHH
Confidence 4677889999999999999999999998875432 25556666677777788 666
Q ss_pred HHHHHHHhhcccc----chH--HHHHHHHHHHHHHHHHHHHHHHHccc
Q 011050 124 LKDAEKLLNLQSN----SMK--SHLLKANALILLERYDMARDAILSGL 165 (494)
Q Consensus 124 ~~~~~~al~l~p~----~~~--a~~~~g~~~~~~~~~~~A~~~~~~al 165 (494)
.....+|-.+-.. ..+ .....|.++...++|.+|-..|..+.
T Consensus 93 ~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 93 EKYIEKAESLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccC
Confidence 6666665554321 122 22334666778999999999988775
No 337
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.36 E-value=2.2 Score=46.79 Aligned_cols=192 Identities=18% Similarity=0.204 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCC---cccccChhHHHHHHH-hhhccCCCCCccccccCCCCCchh
Q 011050 44 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD---PIVLGNRSSAYIRIS-QFLKHRPPSASEYRPLNGLDPTTH 119 (494)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~---~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 119 (494)
.....+-.++|..+...|+|.+|+.+|..+|-.-|-- ...=...+...+... +|+-+..-+- +.+.+ +.+.
T Consensus 988 l~~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~-~Rr~l----~~~~ 1062 (1202)
T KOG0292|consen 988 LSQLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVEL-ERRKL----KKPN 1062 (1202)
T ss_pred HHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeee-eeccc----CCch
Confidence 4456677889999999999999999999998765521 111111122223333 2321111000 00000 1222
Q ss_pred HHHH--HHHHHHHhhccccchHHHHHH-HHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHhhhhhhhccccCCC
Q 011050 120 AELA--LKDAEKLLNLQSNSMKSHLLK-ANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASLIGRRIHGT 196 (494)
Q Consensus 120 ~~~a--~~~~~~al~l~p~~~~a~~~~-g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (494)
...+ +..|=.-..+.|-+.-.-.+. -.++++++++..|.....+.+++.|..+.+....+.+...-.+.-.+ ..
T Consensus 1063 ~~~~~ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q~rki~~a~eknp~Da---~~ 1139 (1202)
T KOG0292|consen 1063 LEQQLELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQARKIKQAAEKNPTDA---YE 1139 (1202)
T ss_pred HHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhcCcccc---cc
Confidence 2333 333334456667654433333 45678999999999999999999998877655444333222211111 11
Q ss_pred CCCCcccccccccccccCcEE---cCCCCcccHhhHHHhccCCCCCCCCCcc
Q 011050 197 PERTDDFDCTLCLKLLYEPIT---TPCGHSFCRSCLFQSMDRGNKCPLCRAV 245 (494)
Q Consensus 197 ~~~~~~~~C~iC~~~~~~Pv~---~~cgh~fc~~Cl~~~~~~~~~CP~Cr~~ 245 (494)
..-..+..-.||...+ .|+. -.|...+|..|..... .+..|-+|...
T Consensus 1140 l~yd~~n~f~iC~~t~-~Piy~g~p~~~cp~cga~y~~~~-~g~iCtvc~V~ 1189 (1202)
T KOG0292|consen 1140 LNYDPHNPFVICGATY-VPIYRGRPDVSCPYCGACFVPSS-KGNICTVCDVG 1189 (1202)
T ss_pred cCcccCCCeeEecccc-eeeecCCCCcCCCcccceecccc-CCceeeeeeee
Confidence 1111222334555322 2332 2466677888866543 45678888654
No 338
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=91.13 E-value=1.4 Score=43.46 Aligned_cols=103 Identities=16% Similarity=0.123 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCC---CcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHH
Q 011050 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPG---DPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAEL 122 (494)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (494)
......++|..++...++++|+...++.+..-.+ .-..|--++.+...+|+| .+
T Consensus 5 q~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y-----------------------~~ 61 (518)
T KOG1941|consen 5 QTKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRY-----------------------KE 61 (518)
T ss_pred hhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHH-----------------------HH
Confidence 3566778999999999999999999999876433 234555566777777777 55
Q ss_pred HHHHHH----HHhhcccc--chHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCC
Q 011050 123 ALKDAE----KLLNLQSN--SMKSHLLKANALILLERYDMARDAILSGLQVDPFS 171 (494)
Q Consensus 123 a~~~~~----~al~l~p~--~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~ 171 (494)
++..+- -+.+++.. ...||.+++..+..+.++.+++.+-+..+.+....
T Consensus 62 mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~ 116 (518)
T KOG1941|consen 62 MLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTR 116 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCC
Confidence 544333 33333322 24577777777777777777777777766664433
No 339
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=91.11 E-value=1.6 Score=43.95 Aligned_cols=146 Identities=19% Similarity=0.165 Sum_probs=90.6
Q ss_pred eccCCCccceeccCCCC---C-chhhHHHHHHHHHHHHHHHH---hcChHHHHHHHHHH-hccCCCCcccccChhHHHHH
Q 011050 22 GIDDVDDYIWANEGEGS---L-PWDRYTHVFDLVQKGNRAFR---ESNFEEAISNYSRA-NNIKPGDPIVLGNRSSAYIR 93 (494)
Q Consensus 22 ~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~g~~~~~---~~~~~~Ai~~y~~a-l~~~p~~~~~~~~~a~~~~~ 93 (494)
+.++++||..+..-... . .-+......--+..|..+-+ .|+.++|+..+..+ ....+.+++.|.-.|.+|-.
T Consensus 150 SyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD 229 (374)
T PF13281_consen 150 SYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKD 229 (374)
T ss_pred HhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 56677777765321111 1 11133334445567777777 89999999999994 45567788999988888865
Q ss_pred HHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhccccchH----------------------------------
Q 011050 94 ISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMK---------------------------------- 139 (494)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~---------------------------------- 139 (494)
+ |+++.. .|.++ -++|+..|.++.+++|+...
T Consensus 230 ~--~~~s~~-~d~~~-----------ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~ 295 (374)
T PF13281_consen 230 L--FLESNF-TDRES-----------LDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGR 295 (374)
T ss_pred H--HHHcCc-cchHH-----------HHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHh
Confidence 4 432211 12111 26777777777777665332
Q ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHH
Q 011050 140 -----------SHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (494)
Q Consensus 140 -----------a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 181 (494)
.+-.++.+....|++++|+.+++++++++|..=.....++++
T Consensus 296 kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~St~~ni 348 (374)
T PF13281_consen 296 KGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELESTLENI 348 (374)
T ss_pred hccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHHHHHHHH
Confidence 122334445568999999999999999877544444444444
No 340
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=90.98 E-value=0.56 Score=37.10 Aligned_cols=65 Identities=17% Similarity=0.110 Sum_probs=49.3
Q ss_pred HHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhccccc--hHHHHH
Q 011050 66 AISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNS--MKSHLL 143 (494)
Q Consensus 66 Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~--~~a~~~ 143 (494)
.+..+.+++..+|+|..+.+.+|..++..|++ ++|++.+-.+++.++++ -.+.-.
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~-----------------------e~Al~~Ll~~v~~dr~~~~~~ar~~ 63 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDY-----------------------EEALDQLLELVRRDRDYEDDAARKR 63 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-H-----------------------HHHHHHHHHHHCC-TTCCCCHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCH-----------------------HHHHHHHHHHHHhCccccccHHHHH
Confidence 46678899999999999999999999999999 99999999999999877 334444
Q ss_pred HHHHHHHHHH
Q 011050 144 KANALILLER 153 (494)
Q Consensus 144 ~g~~~~~~~~ 153 (494)
+-.++..+|.
T Consensus 64 ll~~f~~lg~ 73 (90)
T PF14561_consen 64 LLDIFELLGP 73 (90)
T ss_dssp HHHHHHHH-T
T ss_pred HHHHHHHcCC
Confidence 4444444444
No 341
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=90.97 E-value=0.68 Score=43.12 Aligned_cols=101 Identities=17% Similarity=0.025 Sum_probs=67.2
Q ss_pred HHHHhcChHHHHHHHHHHhccCC----CC---cccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHH
Q 011050 56 RAFRESNFEEAISNYSRANNIKP----GD---PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAE 128 (494)
Q Consensus 56 ~~~~~~~~~~Ai~~y~~al~~~p----~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 128 (494)
.+-....++.|+..|.-|+-..- +. +.++.++|.+|-.+++- . ........|++.+.
T Consensus 86 ~~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~-------~---------~E~~fl~~Al~~y~ 149 (214)
T PF09986_consen 86 DFSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDE-------E---------NEKRFLRKALEFYE 149 (214)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCH-------H---------HHHHHHHHHHHHHH
Confidence 45556788899999998876421 11 23333444444443331 0 01122278888899
Q ss_pred HHhhcccc------chHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCc
Q 011050 129 KLLNLQSN------SMKSHLLKANALILLERYDMARDAILSGLQVDPFSN 172 (494)
Q Consensus 129 ~al~l~p~------~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~ 172 (494)
+|++.... .....|.+|.....+|++++|+.+|.+.+...-.+.
T Consensus 150 ~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 150 EAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 98876532 356888999999999999999999999988544444
No 342
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=90.96 E-value=1.1 Score=46.32 Aligned_cols=92 Identities=20% Similarity=0.052 Sum_probs=66.0
Q ss_pred HHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHH-----HHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHH
Q 011050 56 RAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYI-----RISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKL 130 (494)
Q Consensus 56 ~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a 130 (494)
.+-++.+.++-|..-.+|++++|+.+.+|.-+|.-.. ...-| .+|++..+.+
T Consensus 177 ~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEeA~Ti~Eae~l~-----------------------rqAvkAgE~~ 233 (539)
T PF04184_consen 177 KAWRERNPQARIKAAKEALEINPDCADAYILLAEEEASTIVEAEELL-----------------------RQAVKAGEAS 233 (539)
T ss_pred HHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccccccCHHHHHHHH-----------------------HHHHHHHHHh
Confidence 3457789999999999999999999988877654211 11112 4455555444
Q ss_pred hhccc----------------c--chHHHHHHHHHHHHHHHHHHHHHHHHccccCCCC
Q 011050 131 LNLQS----------------N--SMKSHLLKANALILLERYDMARDAILSGLQVDPF 170 (494)
Q Consensus 131 l~l~p----------------~--~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~ 170 (494)
++.+. . .+.+.+++|.+...+|+.++|++.++..++.+|.
T Consensus 234 lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~ 291 (539)
T PF04184_consen 234 LGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPN 291 (539)
T ss_pred hchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCc
Confidence 44321 0 1345677899999999999999999999998885
No 343
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.94 E-value=0.16 Score=49.68 Aligned_cols=67 Identities=16% Similarity=0.086 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHH
Q 011050 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (494)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (494)
.+.-+..+|..+.+.++...|+..|..|++++|+...-|--|+.+...+|+| .+|-+
T Consensus 147 ~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~-----------------------e~aa~ 203 (377)
T KOG1308|consen 147 LAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNW-----------------------EEAAH 203 (377)
T ss_pred hhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhch-----------------------HHHHH
Confidence 3556778999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccc
Q 011050 126 DAEKLLNLQS 135 (494)
Q Consensus 126 ~~~~al~l~p 135 (494)
+++.|++++-
T Consensus 204 dl~~a~kld~ 213 (377)
T KOG1308|consen 204 DLALACKLDY 213 (377)
T ss_pred HHHHHHhccc
Confidence 9999999874
No 344
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=90.93 E-value=0.12 Score=49.78 Aligned_cols=45 Identities=29% Similarity=0.861 Sum_probs=33.0
Q ss_pred cccccccccccccCc----EEcCCCCcccHhhHHHhccC-CCCCCCCCccc
Q 011050 201 DDFDCTLCLKLLYEP----ITTPCGHSFCRSCLFQSMDR-GNKCPLCRAVL 246 (494)
Q Consensus 201 ~~~~C~iC~~~~~~P----v~~~cgh~fc~~Cl~~~~~~-~~~CP~Cr~~~ 246 (494)
+++ ||+|.+.+..- ..-+||...|+.|......+ ...||-||...
T Consensus 14 ed~-cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y 63 (480)
T COG5175 14 EDY-CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKY 63 (480)
T ss_pred ccc-CcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhc
Confidence 444 99999987643 12389999999998654432 45899999864
No 345
>PRK04841 transcriptional regulator MalT; Provisional
Probab=90.27 E-value=0.69 Score=52.88 Aligned_cols=95 Identities=14% Similarity=0.010 Sum_probs=76.0
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHhccCCCCc-----ccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHH
Q 011050 50 LVQKGNRAFRESNFEEAISNYSRANNIKPGDP-----IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 124 (494)
Q Consensus 50 ~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 124 (494)
....|..++..|++++|...+.+++...+... .++..+|.++...|++ ++|.
T Consensus 455 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~-----------------------~~A~ 511 (903)
T PRK04841 455 NALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGEL-----------------------ARAL 511 (903)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCH-----------------------HHHH
Confidence 34467888899999999999999998655432 3456778888889999 9999
Q ss_pred HHHHHHhhcccc------chHHHHHHHHHHHHHHHHHHHHHHHHccccC
Q 011050 125 KDAEKLLNLQSN------SMKSHLLKANALILLERYDMARDAILSGLQV 167 (494)
Q Consensus 125 ~~~~~al~l~p~------~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 167 (494)
..+.+++..... ...++..+|.++...|++++|...+.+++.+
T Consensus 512 ~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~ 560 (903)
T PRK04841 512 AMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQL 560 (903)
T ss_pred HHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 999998865321 2346778899999999999999999998876
No 346
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=90.24 E-value=1.3 Score=37.52 Aligned_cols=64 Identities=17% Similarity=0.206 Sum_probs=52.0
Q ss_pred cChHHHHHHHHHHhc-cCCC-CcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhccccch
Q 011050 61 SNFEEAISNYSRANN-IKPG-DPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSM 138 (494)
Q Consensus 61 ~~~~~Ai~~y~~al~-~~p~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~ 138 (494)
.|-++.|..+...++ -+|. +-...+-+|..++++++| .++++..+..++.+|+|.
T Consensus 49 ~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY-----------------------~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 49 EDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEY-----------------------SKSLRYVDALLETEPNNR 105 (149)
T ss_pred HHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhH-----------------------HHHHHHHHHHHhhCCCcH
Confidence 455678999999996 5554 347778899999999999 999999999999999998
Q ss_pred HHHHHHHHH
Q 011050 139 KSHLLKANA 147 (494)
Q Consensus 139 ~a~~~~g~~ 147 (494)
+|.-..-.+
T Consensus 106 Qa~~Lk~~i 114 (149)
T KOG3364|consen 106 QALELKETI 114 (149)
T ss_pred HHHHHHHHH
Confidence 886444333
No 347
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=90.18 E-value=3.7 Score=31.12 Aligned_cols=31 Identities=29% Similarity=0.343 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHhc
Q 011050 45 THVFDLVQKGNRAFRESNFEEAISNYSRANN 75 (494)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~ 75 (494)
..|..+..+|..+=+.|+|++|+.+|++|++
T Consensus 4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 4 EMARKYAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4466777778888888888888877755554
No 348
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=90.16 E-value=0.23 Score=48.47 Aligned_cols=61 Identities=30% Similarity=0.544 Sum_probs=45.2
Q ss_pred CCCCcccccccccccccCcEEc-CCCCcccHhhHHHhccCCCCCCCCCcccccCCCCCcccccHHHHHHH
Q 011050 197 PERTDDFDCTLCLKLLYEPITT-PCGHSFCRSCLFQSMDRGNKCPLCRAVLFITPRTCAVSVTLNSIIQK 265 (494)
Q Consensus 197 ~~~~~~~~C~iC~~~~~~Pv~~-~cgh~fc~~Cl~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~l~~~~~~ 265 (494)
....+.++||+|.+.+.-|+.- +=||.-|.+|-.. ....||.||.++.. .-++.+..+++.
T Consensus 43 ~~~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~---~~~~CP~Cr~~~g~-----~R~~amEkV~e~ 104 (299)
T KOG3002|consen 43 LLDLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTK---VSNKCPTCRLPIGN-----IRCRAMEKVAEA 104 (299)
T ss_pred ccchhhccCchhhccCcccceecCCCcEehhhhhhh---hcccCCcccccccc-----HHHHHHHHHHHh
Confidence 4566778999999999999653 6699999999643 34689999998741 234566666665
No 349
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=89.95 E-value=0.87 Score=50.54 Aligned_cols=94 Identities=13% Similarity=0.039 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHhcc--CCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHH
Q 011050 49 DLVQKGNRAFRESNFEEAISNYSRANNI--KPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (494)
Q Consensus 49 ~~~~~g~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (494)
.|......|.+.|++++|+..|.+..+. .| +...|..+..++.+.|++ ++|.+.
T Consensus 292 t~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p-d~~t~~~ll~a~~~~g~~-----------------------~~a~~i 347 (697)
T PLN03081 292 AWNSMLAGYALHGYSEEALCLYYEMRDSGVSI-DQFTFSIMIRIFSRLALL-----------------------EHAKQA 347 (697)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhccch-----------------------HHHHHH
Confidence 3444555566666666666666665442 23 233455555666666666 666666
Q ss_pred HHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHHcccc
Q 011050 127 AEKLLNLQ-SNSMKSHLLKANALILLERYDMARDAILSGLQ 166 (494)
Q Consensus 127 ~~~al~l~-p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~ 166 (494)
+...++.. +.+...+..+...|.+.|++++|...|++..+
T Consensus 348 ~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~ 388 (697)
T PLN03081 348 HAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR 388 (697)
T ss_pred HHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 66655544 33445555666666666666666666666543
No 350
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.67 E-value=2.3 Score=39.96 Aligned_cols=104 Identities=18% Similarity=0.218 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCC------cccccChhHHHHHHHhhhccCCCCCccccccCCCCCchh
Q 011050 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD------PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTH 119 (494)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (494)
.+..-++++-.....-+.+.|+..|++++.+--.+ ..++...+..+.++..|
T Consensus 109 tAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf---------------------- 166 (308)
T KOG1585|consen 109 TAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF---------------------- 166 (308)
T ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh----------------------
Confidence 35666778888888899999999999998773221 37777888889999999
Q ss_pred HHHH----HHHHHHHhhccc--cchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCc
Q 011050 120 AELA----LKDAEKLLNLQS--NSMKSHLLKANALILLERYDMARDAILSGLQVDPFSN 172 (494)
Q Consensus 120 ~~~a----~~~~~~al~l~p--~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~ 172 (494)
.+| ++...-+++.+. +..+++...-.+|...++|..|...|+...++.-.+.
T Consensus 167 -~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~ 224 (308)
T KOG1585|consen 167 -TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLK 224 (308)
T ss_pred -hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccC
Confidence 444 334444555553 3444555444556677899999999999888755443
No 351
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.59 E-value=1.9 Score=40.91 Aligned_cols=98 Identities=15% Similarity=0.117 Sum_probs=49.2
Q ss_pred HHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhccc
Q 011050 56 RAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQS 135 (494)
Q Consensus 56 ~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p 135 (494)
.+.+..+++-|.....++.+.+.+ ..+..+|.++.++-.= ...+..|.-.|+..-+.-|
T Consensus 146 I~lk~~r~d~A~~~lk~mq~ided--~tLtQLA~awv~la~g-------------------gek~qdAfyifeE~s~k~~ 204 (299)
T KOG3081|consen 146 ILLKMHRFDLAEKELKKMQQIDED--ATLTQLAQAWVKLATG-------------------GEKIQDAFYIFEELSEKTP 204 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHccchH--HHHHHHHHHHHHHhcc-------------------chhhhhHHHHHHHHhcccC
Confidence 344555556666655555555432 2333344444443211 0001555555555555444
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchh
Q 011050 136 NSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPL 174 (494)
Q Consensus 136 ~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~ 174 (494)
-.+......|.++..+|+|++|...++.+|..++.+++.
T Consensus 205 ~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpet 243 (299)
T KOG3081|consen 205 PTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPET 243 (299)
T ss_pred CChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHH
Confidence 444555555555556666666666666666655555543
No 352
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=89.51 E-value=3.1 Score=37.46 Aligned_cols=94 Identities=13% Similarity=0.044 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCC--cccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHH
Q 011050 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD--PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 123 (494)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 123 (494)
++..+...++..|.-+++..|........+.+|.. +.-..-.|..|...|.+ ..|
T Consensus 123 d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~-----------------------a~A 179 (251)
T COG4700 123 DAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKY-----------------------ADA 179 (251)
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCc-----------------------hhH
Confidence 34567889999999999999999999999999864 45555567888899999 889
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHc
Q 011050 124 LKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILS 163 (494)
Q Consensus 124 ~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~ 163 (494)
...++.++..-|. +.+-.+.|.-+..+|+.++|..-|..
T Consensus 180 esafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 180 ESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 9999999999885 46667777888888988887665543
No 353
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=89.47 E-value=0.83 Score=47.99 Aligned_cols=87 Identities=16% Similarity=0.085 Sum_probs=74.4
Q ss_pred hcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhccccchH
Q 011050 60 ESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMK 139 (494)
Q Consensus 60 ~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~ 139 (494)
..+.+.|........+.-|+.+..+...|..+...|+. ++|++.+++++.....+.+
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~-----------------------~~Ai~~~~~a~~~q~~~~Q 302 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNL-----------------------EEAIESFERAIESQSEWKQ 302 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCH-----------------------HHHHHHHHHhccchhhHHh
Confidence 45667788889999999999999999999999999999 9999999999865544433
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHccccCCC
Q 011050 140 ----SHLLKANALILLERYDMARDAILSGLQVDP 169 (494)
Q Consensus 140 ----a~~~~g~~~~~~~~~~~A~~~~~~al~l~p 169 (494)
.+|.+|.++..+++|++|..++.+..+.+.
T Consensus 303 l~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~ 336 (468)
T PF10300_consen 303 LHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK 336 (468)
T ss_pred HHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc
Confidence 688999999999999999999999887443
No 354
>PRK04841 transcriptional regulator MalT; Provisional
Probab=89.33 E-value=0.8 Score=52.39 Aligned_cols=99 Identities=16% Similarity=0.126 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHhccCCCC------cccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHH
Q 011050 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGD------PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAE 121 (494)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (494)
..+...|..+...|++++|...|.+++...... ..++.++|.+++..|++ .
T Consensus 492 ~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~-----------------------~ 548 (903)
T PRK04841 492 VATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFL-----------------------Q 548 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCH-----------------------H
Confidence 345567788889999999999999999764321 23556778888999999 9
Q ss_pred HHHHHHHHHhhcccc--------chHHHHHHHHHHHHHHHHHHHHHHHHccccCCC
Q 011050 122 LALKDAEKLLNLQSN--------SMKSHLLKANALILLERYDMARDAILSGLQVDP 169 (494)
Q Consensus 122 ~a~~~~~~al~l~p~--------~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p 169 (494)
+|...+++++.+-.. ....+..+|.++...|++++|...+.+++.+..
T Consensus 549 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~ 604 (903)
T PRK04841 549 AAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLS 604 (903)
T ss_pred HHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhh
Confidence 999999988876321 223456778899999999999999999988644
No 355
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=89.17 E-value=2.1 Score=43.88 Aligned_cols=107 Identities=15% Similarity=0.097 Sum_probs=87.9
Q ss_pred HHhcChHHHHHHHHHHhccCCCC----cccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhc
Q 011050 58 FRESNFEEAISNYSRANNIKPGD----PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNL 133 (494)
Q Consensus 58 ~~~~~~~~Ai~~y~~al~~~p~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l 133 (494)
....|.+.+-..|+.+|++-|.. +.+|...|...+...+. ..|-+.+..|+.+
T Consensus 377 le~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l-----------------------~~ARkiLG~AIG~ 433 (677)
T KOG1915|consen 377 LEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNL-----------------------TGARKILGNAIGK 433 (677)
T ss_pred HHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHccc-----------------------HHHHHHHHHHhcc
Confidence 45688999999999999999964 46777777777777777 8999999999999
Q ss_pred cccchHHHHHHHHH--HHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHhhhhhhhc
Q 011050 134 QSNSMKSHLLKANA--LILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASLIG 190 (494)
Q Consensus 134 ~p~~~~a~~~~g~~--~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~ 190 (494)
.|.. -..+|.+ =.++++++.+...|++.|...|.|-.++.....++..++..-.
T Consensus 434 cPK~---KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdR 489 (677)
T KOG1915|consen 434 CPKD---KLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDR 489 (677)
T ss_pred CCch---hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHH
Confidence 9865 2233333 4678999999999999999999999999999999888876554
No 356
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=89.01 E-value=0.11 Score=58.69 Aligned_cols=48 Identities=27% Similarity=0.715 Sum_probs=42.1
Q ss_pred CCccccccccccccc-CcEEcCCCCcccHhhHHHhccCCCCCCCCCccc
Q 011050 199 RTDDFDCTLCLKLLY-EPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVL 246 (494)
Q Consensus 199 ~~~~~~C~iC~~~~~-~Pv~~~cgh~fc~~Cl~~~~~~~~~CP~Cr~~~ 246 (494)
....+.|++|.+++. ......|||.+|..|...|+.....||.|....
T Consensus 1150 ~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1150 LSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYASSRCPICKSIK 1198 (1394)
T ss_pred hhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHhccCcchhhhh
Confidence 346679999999999 567789999999999999999999999998643
No 357
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=88.83 E-value=1.9 Score=45.33 Aligned_cols=101 Identities=13% Similarity=-0.085 Sum_probs=82.8
Q ss_pred HHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhh
Q 011050 53 KGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLN 132 (494)
Q Consensus 53 ~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~ 132 (494)
.......-++...|+.....++..+|.+..++.+++.+....|... ..+......+..
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~----------------------~~~~~~~~~a~~ 130 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQF----------------------LALADISEIAEW 130 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHH----------------------HHHHHHHHHHHh
Confidence 4445556688888999999999999999999999999988877650 444555566999
Q ss_pred ccccchHHHHHH------HHHHHHHHHHHHHHHHHHccccCCCCCchhH
Q 011050 133 LQSNSMKSHLLK------ANALILLERYDMARDAILSGLQVDPFSNPLQ 175 (494)
Q Consensus 133 l~p~~~~a~~~~------g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~ 175 (494)
..|++......+ |..+..+|+..++..++.++..+.|.++.+.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~ 179 (620)
T COG3914 131 LSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVL 179 (620)
T ss_pred cCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhH
Confidence 999998877666 8888899999999999999999999986543
No 358
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.79 E-value=2.4 Score=37.23 Aligned_cols=100 Identities=17% Similarity=0.008 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHH
Q 011050 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (494)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (494)
.+..+.+........++.+++...+...--+.|+.+.+-..-|..++..|+| .+|+.
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w-----------------------~dA~r 65 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDW-----------------------DDALR 65 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCH-----------------------HHHHH
Confidence 3567788888888999999999999988899999999999999999999999 99999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCC
Q 011050 126 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDP 169 (494)
Q Consensus 126 ~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p 169 (494)
.++.+.+-.|..+.+--.++.|+..+|+.+ ...+..+++.-.+
T Consensus 66 lLr~l~~~~~~~p~~kALlA~CL~~~~D~~-Wr~~A~evle~~~ 108 (160)
T PF09613_consen 66 LLRELEERAPGFPYAKALLALCLYALGDPS-WRRYADEVLESGA 108 (160)
T ss_pred HHHHHhccCCCChHHHHHHHHHHHHcCChH-HHHHHHHHHhcCC
Confidence 999999999999888888899998877653 4444555555444
No 359
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.76 E-value=0.23 Score=49.38 Aligned_cols=47 Identities=34% Similarity=0.696 Sum_probs=33.9
Q ss_pred CCcccccccccccccC--c-EEcCCCCcccHhhHHHhccC----C----CCCCCCCcc
Q 011050 199 RTDDFDCTLCLKLLYE--P-ITTPCGHSFCRSCLFQSMDR----G----NKCPLCRAV 245 (494)
Q Consensus 199 ~~~~~~C~iC~~~~~~--P-v~~~cgh~fc~~Cl~~~~~~----~----~~CP~Cr~~ 245 (494)
....+.|.||++...- . +.+||+|.||++|+...+.. + -.||.+..+
T Consensus 181 ~~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~ 238 (445)
T KOG1814|consen 181 VNSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG 238 (445)
T ss_pred HhhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence 3467899999985443 3 34699999999999887641 1 248877654
No 360
>PLN03218 maturation of RBCL 1; Provisional
Probab=88.42 E-value=1.6 Score=50.51 Aligned_cols=41 Identities=12% Similarity=0.178 Sum_probs=18.3
Q ss_pred HHHhcChHHHHHHHHHHhccC-CCCcccccChhHHHHHHHhh
Q 011050 57 AFRESNFEEAISNYSRANNIK-PGDPIVLGNRSSAYIRISQF 97 (494)
Q Consensus 57 ~~~~~~~~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~ 97 (494)
+.+.|++++|...|.+..+.+ +.+...|..+..+|.+.|++
T Consensus 589 y~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~ 630 (1060)
T PLN03218 589 CANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDW 630 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCH
Confidence 444455555555555544443 22333444444444444444
No 361
>PLN03218 maturation of RBCL 1; Provisional
Probab=88.36 E-value=1.6 Score=50.45 Aligned_cols=91 Identities=12% Similarity=0.061 Sum_probs=51.4
Q ss_pred HHHHHHHhcChHHHHHHHHHHhc----cCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHH
Q 011050 53 KGNRAFRESNFEEAISNYSRANN----IKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAE 128 (494)
Q Consensus 53 ~g~~~~~~~~~~~Ai~~y~~al~----~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 128 (494)
....+.+.|++++|...|.+... +.|+ ...|..+..+|.+.|++ ++|.+.++
T Consensus 548 LI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~l-----------------------deA~elf~ 603 (1060)
T PLN03218 548 LISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQV-----------------------DRAKEVYQ 603 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCH-----------------------HHHHHHHH
Confidence 33444555555556555555543 2232 33444455555566665 66666666
Q ss_pred HHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHHccccC
Q 011050 129 KLLNLQ-SNSMKSHLLKANALILLERYDMARDAILSGLQV 167 (494)
Q Consensus 129 ~al~l~-p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 167 (494)
...+.+ +.+...|..+..+|...|++++|++.|.+..+.
T Consensus 604 ~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~ 643 (1060)
T PLN03218 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK 643 (1060)
T ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 666654 334455666666666677777777766665543
No 362
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=88.27 E-value=2.8 Score=41.79 Aligned_cols=113 Identities=14% Similarity=0.075 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHhccC-CC--------------------------CcccccChhHHHHHHHhhhcc
Q 011050 48 FDLVQKGNRAFRESNFEEAISNYSRANNIK-PG--------------------------DPIVLGNRSSAYIRISQFLKH 100 (494)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~-p~--------------------------~~~~~~~~a~~~~~~~~~~~~ 100 (494)
.-..+.+..+..+|+..+|+......+... .. ...-....|.++..+++|+..
T Consensus 185 ~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~ 264 (352)
T PF02259_consen 185 RVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDE 264 (352)
T ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHh
Confidence 445567777778888888888887777721 11 112223467888999998443
Q ss_pred CCCCCccccccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHH-----------------HHHHHHHHHc
Q 011050 101 RPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLER-----------------YDMARDAILS 163 (494)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~-----------------~~~A~~~~~~ 163 (494)
... . ......++++..+.++++++|++.++|+..|..+...=+ ...|+..|-+
T Consensus 265 ~~~---------~-~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~ 334 (352)
T PF02259_consen 265 LYS---------K-LSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLK 334 (352)
T ss_pred hcc---------c-cccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHH
Confidence 300 0 112333889999999999999999999999988755322 1247778888
Q ss_pred cccCCCC
Q 011050 164 GLQVDPF 170 (494)
Q Consensus 164 al~l~p~ 170 (494)
++.+.+.
T Consensus 335 al~~~~~ 341 (352)
T PF02259_consen 335 ALSLGSK 341 (352)
T ss_pred HHhhCCC
Confidence 8877776
No 363
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=87.74 E-value=0.39 Score=31.22 Aligned_cols=29 Identities=14% Similarity=0.114 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccccC
Q 011050 139 KSHLLKANALILLERYDMARDAILSGLQV 167 (494)
Q Consensus 139 ~a~~~~g~~~~~~~~~~~A~~~~~~al~l 167 (494)
+.|..+|.+-...++|++|+.+|.++|.+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46889999999999999999999999865
No 364
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=87.72 E-value=1.5 Score=42.78 Aligned_cols=109 Identities=14% Similarity=0.041 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHH-hcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHH
Q 011050 48 FDLVQKGNRAFR-ESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (494)
Q Consensus 48 ~~~~~~g~~~~~-~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (494)
.-|...|..-+. .++.+.|...|..+++.-|.+..+|.....-++.+++. +.|-..
T Consensus 36 ~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~-----------------------~~aR~l 92 (280)
T PF05843_consen 36 HVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDI-----------------------NNARAL 92 (280)
T ss_dssp HHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H-----------------------HHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcH-----------------------HHHHHH
Confidence 335556666566 57777799999999999999999999988888888888 999999
Q ss_pred HHHHhhccccch--HHHHHH-HHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHH
Q 011050 127 AEKLLNLQSNSM--KSHLLK-ANALILLERYDMARDAILSGLQVDPFSNPLQASLQ 179 (494)
Q Consensus 127 ~~~al~l~p~~~--~a~~~~-g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~ 179 (494)
+++++..-|... +..+.. ..-=...|+.+...+.+.++.++.|++..+.....
T Consensus 93 fer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f~~ 148 (280)
T PF05843_consen 93 FERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLELFSD 148 (280)
T ss_dssp HHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHHHHC
T ss_pred HHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 999999876554 333333 22235678899999999999988888666544443
No 365
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=87.60 E-value=6.6 Score=40.18 Aligned_cols=137 Identities=16% Similarity=0.114 Sum_probs=80.8
Q ss_pred hhHHHHHHHHHHHHHHHHhcC-hHHHHHHHHHHhccCCCCcc---------------cccChhHH-HHHHHhhhccCC--
Q 011050 42 DRYTHVFDLVQKGNRAFRESN-FEEAISNYSRANNIKPGDPI---------------VLGNRSSA-YIRISQFLKHRP-- 102 (494)
Q Consensus 42 ~~~~~~~~~~~~g~~~~~~~~-~~~Ai~~y~~al~~~p~~~~---------------~~~~~a~~-~~~~~~~~~~~~-- 102 (494)
+...-+..+..-|..+-+.|. -++|+.....+++..|.|.. ++..++.. ++++++++...-
T Consensus 374 DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~ 453 (549)
T PF07079_consen 374 DRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLT 453 (549)
T ss_pred cHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCC
Confidence 344445666677777778877 77899999999998887751 11111111 223344322110
Q ss_pred ------------CCCccccccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCC
Q 011050 103 ------------PSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPF 170 (494)
Q Consensus 103 ------------~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~ 170 (494)
-+|.+|-+. +....++.-...=..+++| ++.+|..+|.+++..++|++|-..+... -|+
T Consensus 454 ~i~i~e~eian~LaDAEyLys-----qgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L---P~n 524 (549)
T PF07079_consen 454 PITISEEEIANFLADAEYLYS-----QGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL---PPN 524 (549)
T ss_pred cccccHHHHHHHHHHHHHHHh-----cccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC---CCc
Confidence 011111000 0011444444444557789 9999999999999999999999998764 332
Q ss_pred ----CchhHHHHHHHHhhhhh
Q 011050 171 ----SNPLQASLQNLERTTAS 187 (494)
Q Consensus 171 ----~~~~~~~~~~~~~~~~~ 187 (494)
+..+++++..+++.+.+
T Consensus 525 ~~~~dskvqKAl~lCqKh~~k 545 (549)
T PF07079_consen 525 ERMRDSKVQKALALCQKHLPK 545 (549)
T ss_pred hhhHHHHHHHHHHHHHHhhhh
Confidence 23455566666665543
No 366
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.39 E-value=0.43 Score=31.03 Aligned_cols=29 Identities=24% Similarity=0.211 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccccC
Q 011050 139 KSHLLKANALILLERYDMARDAILSGLQV 167 (494)
Q Consensus 139 ~a~~~~g~~~~~~~~~~~A~~~~~~al~l 167 (494)
.++..+|.+|..+|++++|...+++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 57789999999999999999999998764
No 367
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=87.07 E-value=4.3 Score=38.54 Aligned_cols=94 Identities=12% Similarity=0.038 Sum_probs=68.1
Q ss_pred HHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhccccc
Q 011050 58 FRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNS 137 (494)
Q Consensus 58 ~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~ 137 (494)
++...-.+|+..-..+|.++|.+.++|.-|-.+.-.++..+ .+-++.+...++-+|++
T Consensus 54 ~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL----------------------~~El~~l~eI~e~npKN 111 (318)
T KOG0530|consen 54 AKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDL----------------------NKELEYLDEIIEDNPKN 111 (318)
T ss_pred hccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHH----------------------HHHHHHHHHHHHhCccc
Confidence 45567789999999999999999999999988887777542 56667777777777777
Q ss_pred hHHHHHHHHHHHHHHHHH-HHHHHHHccccCCCCCch
Q 011050 138 MKSHLLKANALILLERYD-MARDAILSGLQVDPFSNP 173 (494)
Q Consensus 138 ~~a~~~~g~~~~~~~~~~-~A~~~~~~al~l~p~~~~ 173 (494)
.+.|..+-.+...+|++. .-+.....++..|..|-.
T Consensus 112 YQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYH 148 (318)
T KOG0530|consen 112 YQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYH 148 (318)
T ss_pred hhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchh
Confidence 777766666666666555 555555555555544433
No 368
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=86.53 E-value=0.36 Score=32.52 Aligned_cols=42 Identities=29% Similarity=0.726 Sum_probs=24.8
Q ss_pred ccccccccccCcEEcCC-CCcccHhhHHHhccCCCCCCCCCcccc
Q 011050 204 DCTLCLKLLYEPITTPC-GHSFCRSCLFQSMDRGNKCPLCRAVLF 247 (494)
Q Consensus 204 ~C~iC~~~~~~Pv~~~c-gh~fc~~Cl~~~~~~~~~CP~Cr~~~~ 247 (494)
.|.-|.-..+. .+.| -|..|..|+...+..+..||.|..+++
T Consensus 4 nCKsCWf~~k~--Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LP 46 (50)
T PF03854_consen 4 NCKSCWFANKG--LIKCSDHYLCLNCLTLMLSRSDRCPICGKPLP 46 (50)
T ss_dssp ---SS-S--SS--EEE-SS-EEEHHHHHHT-SSSSEETTTTEE--
T ss_pred cChhhhhcCCC--eeeecchhHHHHHHHHHhccccCCCcccCcCc
Confidence 45555533332 3444 588899999999999999999999874
No 369
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.40 E-value=4.6 Score=38.43 Aligned_cols=89 Identities=11% Similarity=0.144 Sum_probs=49.7
Q ss_pred cChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhccccchHH
Q 011050 61 SNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKS 140 (494)
Q Consensus 61 ~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~a 140 (494)
++++.|.-.|.+.-+.-|-.+..+.+.|.|.+.+++| ++|....+.|+..+++++..
T Consensus 187 ek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~-----------------------eeAe~lL~eaL~kd~~dpet 243 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRY-----------------------EEAESLLEEALDKDAKDPET 243 (299)
T ss_pred hhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCH-----------------------HHHHHHHHHHHhccCCCHHH
Confidence 3455555555555554445556666666666666666 66666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHccccCCCCCc
Q 011050 141 HLLKANALILLERYDMARDA-ILSGLQVDPFSN 172 (494)
Q Consensus 141 ~~~~g~~~~~~~~~~~A~~~-~~~al~l~p~~~ 172 (494)
+.++--+-..+|...++... +.+.....|+++
T Consensus 244 L~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 244 LANLIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 66655555555555554443 333333444444
No 370
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=85.77 E-value=6.1 Score=39.35 Aligned_cols=120 Identities=20% Similarity=0.123 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCC----CcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhH
Q 011050 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPG----DPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHA 120 (494)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (494)
..+..+...+..+.+.|.++-|.....++...++. .+.+..-.|......|+-
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~----------------------- 200 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQ----------------------- 200 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCH-----------------------
Confidence 44567888999999999999999999999987643 345555555666666665
Q ss_pred HHHHHHHHHHhhc-c---------------------------------ccchHHHHHHHHHHHHH------HHHHHHHHH
Q 011050 121 ELALKDAEKLLNL-Q---------------------------------SNSMKSHLLKANALILL------ERYDMARDA 160 (494)
Q Consensus 121 ~~a~~~~~~al~l-~---------------------------------p~~~~a~~~~g~~~~~~------~~~~~A~~~ 160 (494)
.+|+..++..+.. . ....++++.+|.-...+ +.+++++..
T Consensus 201 ~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~ 280 (352)
T PF02259_consen 201 EEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKY 280 (352)
T ss_pred HHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHH
Confidence 6666666555551 0 12345677777777667 888899999
Q ss_pred HHccccCCCCCchhHHHHHHHHhhhhh
Q 011050 161 ILSGLQVDPFSNPLQASLQNLERTTAS 187 (494)
Q Consensus 161 ~~~al~l~p~~~~~~~~~~~~~~~~~~ 187 (494)
|.++.+++|.+..++.........+-.
T Consensus 281 ~~~a~~~~~~~~k~~~~~a~~~~~~~~ 307 (352)
T PF02259_consen 281 YKEATKLDPSWEKAWHSWALFNDKLLE 307 (352)
T ss_pred HHHHHHhChhHHHHHHHHHHHHHHHHH
Confidence 999999999988877776666555533
No 371
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=85.58 E-value=4.6 Score=45.82 Aligned_cols=115 Identities=17% Similarity=0.109 Sum_probs=83.2
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHhccCCCCccccc---ChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHH
Q 011050 50 LVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLG---NRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (494)
Q Consensus 50 ~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (494)
.....+++...+.|++|+..|.+.-.--|....-|. ..|.......+- ..|+ ....+|+..
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~-~~~~~~~~~ 541 (932)
T PRK13184 478 CLAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASE---------------QGDP-RDFTQALSE 541 (932)
T ss_pred cccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHh---------------cCCh-HHHHHHHHH
Confidence 344667888899999999999999999998775443 334443332221 0111 223777777
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHH
Q 011050 127 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (494)
Q Consensus 127 ~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 181 (494)
+++.-. .|.-+--|.-.|.+|..+|+|.+-++.|.-|++..|..+.+....+.+
T Consensus 542 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (932)
T PRK13184 542 FSYLHG-GVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHL 595 (932)
T ss_pred HHHhcC-CCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHH
Confidence 777654 356677788889999999999999999999999999999876554433
No 372
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.29 E-value=0.46 Score=43.87 Aligned_cols=33 Identities=27% Similarity=0.423 Sum_probs=28.9
Q ss_pred cccccccccccccCcEEcCCCCcccHhhHHHhc
Q 011050 201 DDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSM 233 (494)
Q Consensus 201 ~~~~C~iC~~~~~~Pv~~~cgh~fc~~Cl~~~~ 233 (494)
+---|++|+..+.+||+.+-||.||+.||.+.+
T Consensus 42 ~FdcCsLtLqPc~dPvit~~GylfdrEaILe~i 74 (303)
T KOG3039|consen 42 PFDCCSLTLQPCRDPVITPDGYLFDREAILEYI 74 (303)
T ss_pred CcceeeeecccccCCccCCCCeeeeHHHHHHHH
Confidence 344679999999999999999999999998754
No 373
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.81 E-value=6.5 Score=36.74 Aligned_cols=53 Identities=25% Similarity=0.103 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhhcc------ccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCch
Q 011050 121 ELALKDAEKLLNLQ------SNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNP 173 (494)
Q Consensus 121 ~~a~~~~~~al~l~------p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~ 173 (494)
.+|+..|+.|-+.- ..--+.+...|.--..+++|.+|++.|++..+-.-+|+-
T Consensus 131 ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~L 189 (288)
T KOG1586|consen 131 EKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNL 189 (288)
T ss_pred HHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence 56666666665432 222245556666667889999999999887654444443
No 374
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=84.80 E-value=1.2 Score=26.08 Aligned_cols=25 Identities=24% Similarity=0.194 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc
Q 011050 139 KSHLLKANALILLERYDMARDAILS 163 (494)
Q Consensus 139 ~a~~~~g~~~~~~~~~~~A~~~~~~ 163 (494)
.+++.+|.++...|++++|...+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 5788999999999999999988753
No 375
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=84.68 E-value=1.9 Score=48.11 Aligned_cols=72 Identities=19% Similarity=0.202 Sum_probs=61.3
Q ss_pred CCCCcccccccccccccCcEEcC-CCCcccHhhHHHhccCCCCCCCCCcccccCCCCCcccccHHHHHHHhChHH
Q 011050 197 PERTDDFDCTLCLKLLYEPITTP-CGHSFCRSCLFQSMDRGNKCPLCRAVLFITPRTCAVSVTLNSIIQKNFPEE 270 (494)
Q Consensus 197 ~~~~~~~~C~iC~~~~~~Pv~~~-cgh~fc~~Cl~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~l~~~~~~~~p~~ 270 (494)
....+.+.=|+...++.+||.+| .|++.|++=+..++..+...|.||.+|.. ....+|..++.-++.|..+.
T Consensus 865 ~dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs~~tdPFNR~pLt~--d~v~pn~eLK~kI~~~~~ek 937 (943)
T KOG2042|consen 865 GDVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLSDCTDPFNREPLTE--DMVSPNEELKAKIRCWIKEK 937 (943)
T ss_pred ccCchhhhCccccccCCCCccCCcccccccHHHHHHHHhcCCCCccccccCch--hhcCCCHHHHHHHHHHHHHh
Confidence 34677888899999999999998 99999999999999999999999999854 56778888888887665443
No 376
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=84.56 E-value=1 Score=28.85 Aligned_cols=33 Identities=15% Similarity=0.010 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHccccCCCCC
Q 011050 139 KSHLLKANALILLERYDMARDA--ILSGLQVDPFS 171 (494)
Q Consensus 139 ~a~~~~g~~~~~~~~~~~A~~~--~~~al~l~p~~ 171 (494)
+.++.+|..+...|++++|++. |.-+..+++.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 4677789999999999999999 54777776654
No 377
>PLN03077 Protein ECB2; Provisional
Probab=84.21 E-value=3.9 Score=46.57 Aligned_cols=97 Identities=11% Similarity=-0.010 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHhcc--CCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHH
Q 011050 48 FDLVQKGNRAFRESNFEEAISNYSRANNI--KPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (494)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (494)
..|......+.+.|+.++|+..|++..+. .|+.. .|..+-.++.+.|.+ ++|.+
T Consensus 555 ~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~-T~~~ll~a~~~~g~v-----------------------~ea~~ 610 (857)
T PLN03077 555 VSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV-TFISLLCACSRSGMV-----------------------TQGLE 610 (857)
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc-cHHHHHHHHhhcChH-----------------------HHHHH
Confidence 34555566677778888888888877653 45433 344444556667777 77777
Q ss_pred HHHHHhhc---cccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCC
Q 011050 126 DAEKLLNL---QSNSMKSHLLKANALILLERYDMARDAILSGLQVDPF 170 (494)
Q Consensus 126 ~~~~al~l---~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~ 170 (494)
.++...+. .| +...|.-+..+|...|++++|.+.+++. .+.|+
T Consensus 611 ~f~~M~~~~gi~P-~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd 656 (857)
T PLN03077 611 YFHSMEEKYSITP-NLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD 656 (857)
T ss_pred HHHHHHHHhCCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC
Confidence 77776632 34 3356777777888888888888877765 24454
No 378
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=84.17 E-value=1.3 Score=46.27 Aligned_cols=91 Identities=15% Similarity=0.001 Sum_probs=76.8
Q ss_pred HhcChHHHHHHHHHHhccCCCC--cccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhcccc
Q 011050 59 RESNFEEAISNYSRANNIKPGD--PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSN 136 (494)
Q Consensus 59 ~~~~~~~Ai~~y~~al~~~p~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~ 136 (494)
-+|+.-+|+.||..|+...|.. ..++..+|.++.+.|.. .+|--.+..|++-.|.
T Consensus 225 ~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~s-----------------------adA~iILhAA~~dA~~ 281 (886)
T KOG4507|consen 225 IKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFS-----------------------ADAAVILHAALDDADF 281 (886)
T ss_pred HcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccc-----------------------cchhheeehhccCCcc
Confidence 4599999999999999997753 47778889999999987 5555556777777777
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCc
Q 011050 137 SMKSHLLKANALILLERYDMARDAILSGLQVDPFSN 172 (494)
Q Consensus 137 ~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~ 172 (494)
...-||.+|++|..+|.|-...-.|..+.+.+|...
T Consensus 282 ~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~ 317 (886)
T KOG4507|consen 282 FTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFE 317 (886)
T ss_pred ccccceeHHHHHHHHhhhhhhhhhhhhhhccCcchh
Confidence 777799999999999999999999999999999654
No 379
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=84.09 E-value=1.6 Score=28.10 Aligned_cols=30 Identities=23% Similarity=0.192 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhcc
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNI 76 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~ 76 (494)
+..+...|..+...|+|++|...+.+++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 456778899999999999999999999875
No 380
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=83.77 E-value=0.52 Score=45.00 Aligned_cols=41 Identities=29% Similarity=0.643 Sum_probs=29.2
Q ss_pred cccccccccc-CcEEcCCCCcccHhhHHHhccCCCCCCCCCccc
Q 011050 204 DCTLCLKLLY-EPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVL 246 (494)
Q Consensus 204 ~C~iC~~~~~-~Pv~~~cgh~fc~~Cl~~~~~~~~~CP~Cr~~~ 246 (494)
.|.-|...+. .-.+++|.|.||..|.... ..+.||.|--.+
T Consensus 92 fCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~--~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 92 FCDRCDFPIAIYGRMIPCKHVFCLECARSD--SDKICPLCDDRV 133 (389)
T ss_pred eecccCCcceeeecccccchhhhhhhhhcC--ccccCcCcccHH
Confidence 4777775433 3346899999999997543 346899997654
No 381
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=83.64 E-value=1.6 Score=42.20 Aligned_cols=63 Identities=17% Similarity=0.134 Sum_probs=56.7
Q ss_pred ccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHH
Q 011050 82 IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAI 161 (494)
Q Consensus 82 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~ 161 (494)
.++..++..+...+++ +.+....+..+.++|.+-.+|.++-.+|+..|+...|+..|
T Consensus 154 ~~l~~lae~~~~~~~~-----------------------~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y 210 (280)
T COG3629 154 KALTKLAEALIACGRA-----------------------DAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAY 210 (280)
T ss_pred HHHHHHHHHHHhcccH-----------------------HHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHH
Confidence 5666777788888888 99999999999999999999999999999999999999999
Q ss_pred HccccC
Q 011050 162 LSGLQV 167 (494)
Q Consensus 162 ~~al~l 167 (494)
.+.-++
T Consensus 211 ~~l~~~ 216 (280)
T COG3629 211 RQLKKT 216 (280)
T ss_pred HHHHHH
Confidence 988664
No 382
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=83.51 E-value=1.5 Score=28.50 Aligned_cols=28 Identities=32% Similarity=0.478 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHhcc
Q 011050 49 DLVQKGNRAFRESNFEEAISNYSRANNI 76 (494)
Q Consensus 49 ~~~~~g~~~~~~~~~~~Ai~~y~~al~~ 76 (494)
-+...|...+..++|.+|+..|.+++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4567899999999999999999999986
No 383
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=83.41 E-value=0.52 Score=50.46 Aligned_cols=46 Identities=28% Similarity=0.763 Sum_probs=39.0
Q ss_pred cccccccccccccCcEEcCCCCcccHhhHHHhccC---CCCCCCCCccc
Q 011050 201 DDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDR---GNKCPLCRAVL 246 (494)
Q Consensus 201 ~~~~C~iC~~~~~~Pv~~~cgh~fc~~Cl~~~~~~---~~~CP~Cr~~~ 246 (494)
..++|++|...++.|+.+.|-|.||..|+...+.. ...||+|+...
T Consensus 20 k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~ 68 (684)
T KOG4362|consen 20 KILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDI 68 (684)
T ss_pred hhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhh
Confidence 47789999999999999999999999999876542 34699999765
No 384
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=83.24 E-value=1.4 Score=29.43 Aligned_cols=38 Identities=21% Similarity=0.643 Sum_probs=22.9
Q ss_pred cccccccccCcEEc---CCCCcccHhhHHHhccCCC--CCCCC
Q 011050 205 CTLCLKLLYEPITT---PCGHSFCRSCLFQSMDRGN--KCPLC 242 (494)
Q Consensus 205 C~iC~~~~~~Pv~~---~cgh~fc~~Cl~~~~~~~~--~CP~C 242 (494)
|.+|.++....+.= .|+-.++..|+...+.... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 67788887777653 5999999999999887544 69987
No 385
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=82.49 E-value=2.7 Score=40.48 Aligned_cols=72 Identities=17% Similarity=0.083 Sum_probs=53.2
Q ss_pred ccCCCccceeccCCCCCchhhHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhh
Q 011050 23 IDDVDDYIWANEGEGSLPWDRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQF 97 (494)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~ 97 (494)
..+-++|+|+.....-+.. -..+-+...+..+...|.|.+|+..-++++.++|-+...+..+-+.+..+|+-
T Consensus 258 yl~e~~y~Waedererle~---ly~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~ 329 (361)
T COG3947 258 YLPEADYPWAEDERERLEQ---LYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDE 329 (361)
T ss_pred cCCccccccccchHHHHHH---HHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccc
Confidence 3455677787654331111 11223445677788899999999999999999999999999888889998885
No 386
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=80.87 E-value=15 Score=31.91 Aligned_cols=97 Identities=13% Similarity=-0.033 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHH
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (494)
+..+.+........++..++-......--+.|+.+.+-.--+..++..|+| .+|++.
T Consensus 10 v~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w-----------------------~eA~rv 66 (153)
T TIGR02561 10 LGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNY-----------------------DEAARI 66 (153)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCH-----------------------HHHHHH
Confidence 445555666666688999988888888888999999999999999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccC
Q 011050 127 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQV 167 (494)
Q Consensus 127 ~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 167 (494)
++...+-.+..+.+--.++.|+..+|+.+ ...+..+++.-
T Consensus 67 lr~l~~~~~~~p~~kAL~A~CL~al~Dp~-Wr~~A~~~le~ 106 (153)
T TIGR02561 67 LRELLSSAGAPPYGKALLALCLNAKGDAE-WHVHADEVLAR 106 (153)
T ss_pred HHhhhccCCCchHHHHHHHHHHHhcCChH-HHHHHHHHHHh
Confidence 99999988888888888889998888653 33334444443
No 387
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.46 E-value=4.5 Score=41.25 Aligned_cols=36 Identities=25% Similarity=0.704 Sum_probs=26.3
Q ss_pred CCccccccccc-ccccCcE---EcCCCCcccHhhHHHhcc
Q 011050 199 RTDDFDCTLCL-KLLYEPI---TTPCGHSFCRSCLFQSMD 234 (494)
Q Consensus 199 ~~~~~~C~iC~-~~~~~Pv---~~~cgh~fc~~Cl~~~~~ 234 (494)
.....+|.+|. +.....- ...|||.||..|+.++..
T Consensus 143 ~~~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~ie 182 (384)
T KOG1812|consen 143 KLPKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIE 182 (384)
T ss_pred ccccccCccCccccccHhhhHHHhcccchhhhHHhHHHhh
Confidence 34577899999 4433323 346999999999998765
No 388
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=80.23 E-value=1.7 Score=42.88 Aligned_cols=71 Identities=15% Similarity=0.058 Sum_probs=57.2
Q ss_pred HHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhc
Q 011050 54 GNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNL 133 (494)
Q Consensus 54 g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l 133 (494)
+...++.+++..|+..-..+++.++....+|+.|++++..+.++ ++|+++...+.+.
T Consensus 282 ~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~-----------------------~~a~~~~~~a~~~ 338 (372)
T KOG0546|consen 282 AAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNY-----------------------DEALEDLKKAKQK 338 (372)
T ss_pred HHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhch-----------------------hhhHHHHHHhhcc
Confidence 34445666777777777777888888999999999999999999 9999999999999
Q ss_pred cccchHHHHHHHHH
Q 011050 134 QSNSMKSHLLKANA 147 (494)
Q Consensus 134 ~p~~~~a~~~~g~~ 147 (494)
.|++....-.+..+
T Consensus 339 ~p~d~~i~~~~~~~ 352 (372)
T KOG0546|consen 339 APNDKAIEEELENV 352 (372)
T ss_pred CcchHHHHHHHHHh
Confidence 99886654444333
No 389
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=80.23 E-value=1.1 Score=31.06 Aligned_cols=41 Identities=24% Similarity=0.615 Sum_probs=21.4
Q ss_pred cccccccccccCcEE-cCCCCcccHhhHHHhcc-----CCCCCCCCCc
Q 011050 203 FDCTLCLKLLYEPIT-TPCGHSFCRSCLFQSMD-----RGNKCPLCRA 244 (494)
Q Consensus 203 ~~C~iC~~~~~~Pv~-~~cgh~fc~~Cl~~~~~-----~~~~CP~Cr~ 244 (494)
+.|++....+..|+. ..|.|.-|-+= ..++. ....||.|++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFDl-~~fl~~~~~~~~W~CPiC~~ 49 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFDL-ESFLESNQRTPKWKCPICNK 49 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EEH-HHHHHHHHHS---B-TTT--
T ss_pred eeCCCCCCEEEeCccCCcCcccceECH-HHHHHHhhccCCeECcCCcC
Confidence 679999999999986 59999977442 22222 3457999986
No 390
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=80.20 E-value=3.2 Score=30.82 Aligned_cols=32 Identities=28% Similarity=0.420 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHhcc
Q 011050 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNI 76 (494)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~ 76 (494)
..+..+..+|..+=+.|+|++|+.+|.+|++.
T Consensus 3 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 3 DKAIELIKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 46778889999999999999999999999884
No 391
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=80.13 E-value=7.3 Score=40.42 Aligned_cols=59 Identities=15% Similarity=0.107 Sum_probs=50.9
Q ss_pred cccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhcccc--chHHHHHHHHHHHHHHHHHHHHHH
Q 011050 83 VLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSN--SMKSHLLKANALILLERYDMARDA 160 (494)
Q Consensus 83 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~--~~~a~~~~g~~~~~~~~~~~A~~~ 160 (494)
+-.++|+|.-++|+. ++|++.++..++.+|. +...++++-.+|..++.|.++...
T Consensus 261 ~KrRLAmCarklGr~-----------------------~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~l 317 (539)
T PF04184_consen 261 AKRRLAMCARKLGRL-----------------------REAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQAL 317 (539)
T ss_pred hHHHHHHHHHHhCCh-----------------------HHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHH
Confidence 344578999999999 9999999999988774 566899999999999999999988
Q ss_pred HHcc
Q 011050 161 ILSG 164 (494)
Q Consensus 161 ~~~a 164 (494)
+.+.
T Consensus 318 L~kY 321 (539)
T PF04184_consen 318 LAKY 321 (539)
T ss_pred HHHh
Confidence 8875
No 392
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=80.06 E-value=8.4 Score=39.44 Aligned_cols=81 Identities=15% Similarity=0.174 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHH
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (494)
.......|.-+|..|+|.++..+-.-..+++| .+.+|.-+|.|.+...+| .+|...
T Consensus 462 ian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y-----------------------~eA~~~ 517 (549)
T PF07079_consen 462 IANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRY-----------------------QEAWEY 517 (549)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhH-----------------------HHHHHH
Confidence 55677889999999999999999999999999 899999999999999999 899765
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHH
Q 011050 127 AEKLLNLQSNSMKSHLLKANALILLE 152 (494)
Q Consensus 127 ~~~al~l~p~~~~a~~~~g~~~~~~~ 152 (494)
+.+. -.+.+-..+....|.+++...
T Consensus 518 l~~L-P~n~~~~dskvqKAl~lCqKh 542 (549)
T PF07079_consen 518 LQKL-PPNERMRDSKVQKALALCQKH 542 (549)
T ss_pred HHhC-CCchhhHHHHHHHHHHHHHHh
Confidence 5543 224444556666676666543
No 393
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=79.80 E-value=25 Score=26.84 Aligned_cols=31 Identities=16% Similarity=0.292 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHhc
Q 011050 45 THVFDLVQKGNRAFRESNFEEAISNYSRANN 75 (494)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~ 75 (494)
..+..+..+|...=+.|+|++|+.+|.+||+
T Consensus 4 ~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 4 LAAKEVLKRAVELDQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3467778888888888888888888877766
No 394
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=79.59 E-value=6.3 Score=45.65 Aligned_cols=86 Identities=16% Similarity=0.074 Sum_probs=51.3
Q ss_pred cChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhccccchHH
Q 011050 61 SNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKS 140 (494)
Q Consensus 61 ~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~a 140 (494)
|.-+.-...|.+|.++.. ...+|..++.+|.+-..+ ++|.+.++.-+..--+..+.
T Consensus 1511 G~eesl~kVFeRAcqycd-~~~V~~~L~~iy~k~ek~-----------------------~~A~ell~~m~KKF~q~~~v 1566 (1710)
T KOG1070|consen 1511 GTEESLKKVFERACQYCD-AYTVHLKLLGIYEKSEKN-----------------------DEADELLRLMLKKFGQTRKV 1566 (1710)
T ss_pred CcHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHhhcc-----------------------hhHHHHHHHHHHHhcchhhH
Confidence 433444455666655532 235555666666666666 66666666666655555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHccccCCCC
Q 011050 141 HLLKANALILLERYDMARDAILSGLQVDPF 170 (494)
Q Consensus 141 ~~~~g~~~~~~~~~~~A~~~~~~al~l~p~ 170 (494)
|...|..++...+-++|...+.+||+--|.
T Consensus 1567 W~~y~~fLl~~ne~~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1567 WIMYADFLLRQNEAEAARELLKRALKSLPK 1596 (1710)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhhcch
Confidence 666666666666666666666666666665
No 395
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=79.53 E-value=1.1 Score=42.92 Aligned_cols=45 Identities=27% Similarity=0.847 Sum_probs=36.1
Q ss_pred Cccccccccccccc----CcEEcCCCCcccHhhHHHhccCCCCCCCCCc
Q 011050 200 TDDFDCTLCLKLLY----EPITTPCGHSFCRSCLFQSMDRGNKCPLCRA 244 (494)
Q Consensus 200 ~~~~~C~iC~~~~~----~Pv~~~cgh~fc~~Cl~~~~~~~~~CP~Cr~ 244 (494)
.....||+|.+.+. .|..++|||+....|+....-.+..||+|..
T Consensus 156 ~~~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 156 SSEFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred cccCCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 34555999998543 4456799999999999998877788999977
No 396
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=79.49 E-value=13 Score=36.02 Aligned_cols=108 Identities=19% Similarity=0.144 Sum_probs=70.7
Q ss_pred hhhHHHHHHHHHHHHHHHHhc-ChHHHHHHHHHHhccC----C---CCc-------ccccChhHHHHHHHhhhccCCCCC
Q 011050 41 WDRYTHVFDLVQKGNRAFRES-NFEEAISNYSRANNIK----P---GDP-------IVLGNRSSAYIRISQFLKHRPPSA 105 (494)
Q Consensus 41 ~~~~~~~~~~~~~g~~~~~~~-~~~~Ai~~y~~al~~~----p---~~~-------~~~~~~a~~~~~~~~~~~~~~~~~ 105 (494)
.....-+.-+.+-|...+.++ +|+.|+...++|+++- . ..+ .++..++.+|...+.+
T Consensus 29 ~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~-------- 100 (278)
T PF08631_consen 29 DMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTY-------- 100 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCCh--------
Confidence 344556778899999999999 9999999999999882 2 122 3333444445444433
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCC
Q 011050 106 SEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVD 168 (494)
Q Consensus 106 ~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~ 168 (494)
+...+|....+.+-.--|+.+..++..-.++...++.+++-+.+.+.+.--
T Consensus 101 ------------~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~ 151 (278)
T PF08631_consen 101 ------------ESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV 151 (278)
T ss_pred ------------HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc
Confidence 223555555555555557766666666666666677777777777776543
No 397
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=79.43 E-value=4.4 Score=25.93 Aligned_cols=33 Identities=15% Similarity=0.174 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHhcChHHHHHH--HHHHhccCCCC
Q 011050 48 FDLVQKGNRAFRESNFEEAISN--YSRANNIKPGD 80 (494)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~--y~~al~~~p~~ 80 (494)
+.+...|..++.+|+|++|+.. |.-+..+++.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 3456779999999999999999 54877777654
No 398
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=79.29 E-value=2.5 Score=33.56 Aligned_cols=52 Identities=13% Similarity=0.105 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhhccc---------cchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCc
Q 011050 121 ELALKDAEKLLNLQS---------NSMKSHLLKANALILLERYDMARDAILSGLQVDPFSN 172 (494)
Q Consensus 121 ~~a~~~~~~al~l~p---------~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~ 172 (494)
.+|++.+.+..+... ....+...+|.++...|++++|+..+++|+++-....
T Consensus 15 ~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~ 75 (94)
T PF12862_consen 15 SEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENG 75 (94)
T ss_pred HHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHC
Confidence 888887777776532 2346788899999999999999999999998755433
No 399
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=78.76 E-value=0.5 Score=43.38 Aligned_cols=46 Identities=37% Similarity=0.932 Sum_probs=35.6
Q ss_pred cccccccccc-cccCc-EE---cC-CCCcccHhhHHHhccCCC-CCC--CCCccc
Q 011050 201 DDFDCTLCLK-LLYEP-IT---TP-CGHSFCRSCLFQSMDRGN-KCP--LCRAVL 246 (494)
Q Consensus 201 ~~~~C~iC~~-~~~~P-v~---~~-cgh~fc~~Cl~~~~~~~~-~CP--~Cr~~~ 246 (494)
.+..||+|.. .+-+| +. -| |-|.+|.+|..+.+..|. .|| -|...|
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kIL 63 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKIL 63 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHH
Confidence 4668999995 56677 21 24 999999999999888775 699 787665
No 400
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.69 E-value=0.96 Score=49.51 Aligned_cols=35 Identities=37% Similarity=0.843 Sum_probs=27.6
Q ss_pred CCcccccccccc-cccCc-EEcCCCCcccHhhHHHhc
Q 011050 199 RTDDFDCTLCLK-LLYEP-ITTPCGHSFCRSCLFQSM 233 (494)
Q Consensus 199 ~~~~~~C~iC~~-~~~~P-v~~~cgh~fc~~Cl~~~~ 233 (494)
..+.-.|.+|.. ++..| +.+||||.|+++||..+.
T Consensus 814 ~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 814 LEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHV 850 (911)
T ss_pred ecCccchHHhcchhhcCcceeeeccchHHHHHHHHHH
Confidence 446678999997 45667 457999999999998754
No 401
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=78.50 E-value=5.1 Score=38.04 Aligned_cols=92 Identities=11% Similarity=0.050 Sum_probs=79.9
Q ss_pred ChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHH-HHHHHHHHHhhccccchHH
Q 011050 62 NFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAE-LALKDAEKLLNLQSNSMKS 140 (494)
Q Consensus 62 ~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~a~~~~~~al~l~p~~~~a 140 (494)
+..+-+...++.++-+|+|..+|..|-.+.-.+|++ . .-++....++..|.++.-|
T Consensus 93 dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~-----------------------s~rELef~~~~l~~DaKNYHa 149 (318)
T KOG0530|consen 93 DLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDP-----------------------SFRELEFTKLMLDDDAKNYHA 149 (318)
T ss_pred HHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCc-----------------------ccchHHHHHHHHhccccchhh
Confidence 445677888899999999999999998888888877 4 6788899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHH
Q 011050 141 HLLKANALILLERYDMARDAILSGLQVDPFSNPLQA 176 (494)
Q Consensus 141 ~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~ 176 (494)
|-.+-.++...+.|++-+++..+.++.|-.|++++.
T Consensus 150 WshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN 185 (318)
T KOG0530|consen 150 WSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWN 185 (318)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhh
Confidence 999999999999999999999999998887776653
No 402
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=77.86 E-value=4.1 Score=32.32 Aligned_cols=58 Identities=22% Similarity=0.283 Sum_probs=46.3
Q ss_pred HHHHHhcChHHHHHHHHHHhccCCCC---------cccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHH
Q 011050 55 NRAFRESNFEEAISNYSRANNIKPGD---------PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (494)
Q Consensus 55 ~~~~~~~~~~~Ai~~y~~al~~~p~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (494)
....+.|||..|+..+.+.+...... ..++.++|..+...|++ ++|+.
T Consensus 6 ~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~-----------------------~~A~~ 62 (94)
T PF12862_consen 6 LNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHY-----------------------EEALQ 62 (94)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCH-----------------------HHHHH
Confidence 34567899999999888887763322 35667889999999999 99999
Q ss_pred HHHHHhhccc
Q 011050 126 DAEKLLNLQS 135 (494)
Q Consensus 126 ~~~~al~l~p 135 (494)
.+++|+++-.
T Consensus 63 ~l~eAi~~Ar 72 (94)
T PF12862_consen 63 ALEEAIRLAR 72 (94)
T ss_pred HHHHHHHHHH
Confidence 9999998754
No 403
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=77.63 E-value=8.2 Score=39.00 Aligned_cols=53 Identities=19% Similarity=0.054 Sum_probs=42.7
Q ss_pred hHHHHHHHHHH-HhhccccchHHHHHHHHHHHH---------HHHHHHHHHHHHccccCCCCC
Q 011050 119 HAELALKDAEK-LLNLQSNSMKSHLLKANALIL---------LERYDMARDAILSGLQVDPFS 171 (494)
Q Consensus 119 ~~~~a~~~~~~-al~l~p~~~~a~~~~g~~~~~---------~~~~~~A~~~~~~al~l~p~~ 171 (494)
+-++|+..+.. .....+.+++.+-..|.+|-. ....++|++.|.++++++|+.
T Consensus 197 dre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~ 259 (374)
T PF13281_consen 197 DREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY 259 (374)
T ss_pred CHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc
Confidence 33899999988 555567888999999999854 345789999999999999753
No 404
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=77.16 E-value=6 Score=39.32 Aligned_cols=101 Identities=15% Similarity=-0.035 Sum_probs=75.2
Q ss_pred HHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHH
Q 011050 67 ISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKAN 146 (494)
Q Consensus 67 i~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~a~~~~g~ 146 (494)
...|++.+.-+|.|..+|..++...-.+-... ... .-.....++..+..+++|++.+|++...+..+-.
T Consensus 5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~---~~~--------~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~ 73 (321)
T PF08424_consen 5 TAELNRRVRENPHDIEAWLELIEFQDELFRLQ---SSS--------KAERRALAERKLSILERALKHNPDSERLLLGYLE 73 (321)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhcccc---ccc--------hhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34678889999999999888654443332220 000 2233445578899999999999999998888877
Q ss_pred HHHHHHHHHHHHHHHHccccCCCCCchhHHHH
Q 011050 147 ALILLERYDMARDAILSGLQVDPFSNPLQASL 178 (494)
Q Consensus 147 ~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~ 178 (494)
+......-++..+-+++++..+|++..++...
T Consensus 74 ~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~y 105 (321)
T PF08424_consen 74 EGEKVWDSEKLAKKWEELLFKNPGSPELWREY 105 (321)
T ss_pred HHHHhCCHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 88888888888899999999999988776543
No 405
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=76.57 E-value=4.5 Score=30.84 Aligned_cols=33 Identities=15% Similarity=0.251 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcc
Q 011050 44 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNI 76 (494)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~ 76 (494)
.+.+..+..+|..+=+.|+|++|+.+|.+|+++
T Consensus 3 e~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 3 ERDAVQFARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 456788889999999999999999999999984
No 406
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=76.03 E-value=3.9 Score=35.30 Aligned_cols=51 Identities=8% Similarity=0.079 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhh
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQF 97 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~ 97 (494)
+.....++..++.+|+|+-|....+.++..+|++..+..-+|.++.+++.-
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 356788999999999999999999999999999999988889988888865
No 407
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=75.11 E-value=12 Score=39.60 Aligned_cols=96 Identities=17% Similarity=0.059 Sum_probs=73.4
Q ss_pred HHhcChHH-HHHHHHHHhccCCCCcccccCh--hHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhcc
Q 011050 58 FRESNFEE-AISNYSRANNIKPGDPIVLGNR--SSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQ 134 (494)
Q Consensus 58 ~~~~~~~~-Ai~~y~~al~~~p~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~ 134 (494)
+..++.+. |+..|...+.++|.++.++... +..+..++.. ..++-..+.++..|
T Consensus 41 l~~~~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~-----------------------~~~~~~~~~~l~~~ 97 (620)
T COG3914 41 LNAEGLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADS-----------------------TLAFLAKRIPLSVN 97 (620)
T ss_pred hcccCchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccc-----------------------hhHHHHHhhhHhcC
Confidence 44455554 7888888888999988774433 4444445555 67888899999999
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHc-cccCCCCCchhHH
Q 011050 135 SNSMKSHLLKANALILLERYDMARDAILS-GLQVDPFSNPLQA 176 (494)
Q Consensus 135 p~~~~a~~~~g~~~~~~~~~~~A~~~~~~-al~l~p~~~~~~~ 176 (494)
|+++.++..+|.++...|....+...+.+ +....|.|..+..
T Consensus 98 ~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 140 (620)
T COG3914 98 PENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLG 140 (620)
T ss_pred cccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHh
Confidence 99999999999999878777777776666 8888998886543
No 408
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=75.00 E-value=4.3 Score=40.66 Aligned_cols=52 Identities=15% Similarity=0.174 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCc
Q 011050 121 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSN 172 (494)
Q Consensus 121 ~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~ 172 (494)
..|..++..++++.|+.+.+-..-+.+|+..|+..++-..++.+++.+|+-.
T Consensus 246 ~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ 297 (531)
T COG3898 246 ASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD 297 (531)
T ss_pred HHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH
Confidence 6889999999999999999999999999999999999999999999999754
No 409
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=74.92 E-value=3.3 Score=27.88 Aligned_cols=31 Identities=19% Similarity=0.133 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHccccCCCCCc
Q 011050 141 HLLKANALILLERYDMARDAILSGLQVDPFSN 172 (494)
Q Consensus 141 ~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~ 172 (494)
.+.+|.+|..+|+++.|...+++.+. .++++
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~-~~~~~ 32 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIE-EGDEA 32 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHH-cCCHH
Confidence 36789999999999999999999984 44433
No 410
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=73.95 E-value=9.3 Score=29.00 Aligned_cols=57 Identities=19% Similarity=0.088 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHhhh
Q 011050 121 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTT 185 (494)
Q Consensus 121 ~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~ 185 (494)
..|...+.+|+++|... ......-.|.+|++.+.++++..|+++......+.+++.+
T Consensus 4 ~~A~~~a~~AVe~D~~g--------r~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~ 60 (75)
T cd02682 4 EMARKYAINAVKAEKEG--------NAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMINEYK 60 (75)
T ss_pred HHHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 67888899999987532 2233445678899999999999999886554445554444
No 411
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=73.77 E-value=7.9 Score=37.67 Aligned_cols=76 Identities=12% Similarity=0.027 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChh-HHHHHHHhhhccCCCCCccccccCCCCCchhHHH
Q 011050 44 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRS-SAYIRISQFLKHRPPSASEYRPLNGLDPTTHAEL 122 (494)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (494)
+.+..-|..-++-.-+.|-|.+--..|.+++..+|.++++|..-+ --+...+++ ..
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani-----------------------~s 160 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANI-----------------------ES 160 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccH-----------------------HH
Confidence 334455555666666677788888899999999999999998733 445566777 88
Q ss_pred HHHHHHHHhhccccchHHHH
Q 011050 123 ALKDAEKLLNLQSNSMKSHL 142 (494)
Q Consensus 123 a~~~~~~al~l~p~~~~a~~ 142 (494)
+...+.++++++|+++..|+
T Consensus 161 ~Ra~f~~glR~N~~~p~iw~ 180 (435)
T COG5191 161 SRAMFLKGLRMNSRSPRIWI 180 (435)
T ss_pred HHHHHHhhhccCCCCchHHH
Confidence 99999999999999987653
No 412
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=73.68 E-value=2 Score=36.26 Aligned_cols=44 Identities=20% Similarity=0.508 Sum_probs=34.0
Q ss_pred ccccccccccccC--cE-EcCCCC------cccHhhHHHhccCCCCCCCCCcc
Q 011050 202 DFDCTLCLKLLYE--PI-TTPCGH------SFCRSCLFQSMDRGNKCPLCRAV 245 (494)
Q Consensus 202 ~~~C~iC~~~~~~--Pv-~~~cgh------~fc~~Cl~~~~~~~~~CP~Cr~~ 245 (494)
..+|.||++.+.+ .| .++||. -||..|+.+|.......|-=|..
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~~~rDPfnR~I 78 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRERNRDPFNRNI 78 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhhccCCCcccce
Confidence 6789999998777 54 468885 59999999997666677766554
No 413
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=73.63 E-value=3 Score=29.32 Aligned_cols=29 Identities=24% Similarity=0.587 Sum_probs=22.3
Q ss_pred CCCCcccHhhHHHhccCCCCCCCCCcccccC
Q 011050 219 PCGHSFCRSCLFQSMDRGNKCPLCRAVLFIT 249 (494)
Q Consensus 219 ~cgh~fc~~Cl~~~~~~~~~CP~Cr~~~~~~ 249 (494)
+=-.|||..|....+ ...||-|+..|...
T Consensus 26 SfECTFC~~C~e~~l--~~~CPNCgGelv~R 54 (57)
T PF06906_consen 26 SFECTFCADCAETML--NGVCPNCGGELVRR 54 (57)
T ss_pred eEeCcccHHHHHHHh--cCcCcCCCCccccC
Confidence 344589999998776 46899999988544
No 414
>PHA03096 p28-like protein; Provisional
Probab=73.57 E-value=1.5 Score=42.43 Aligned_cols=42 Identities=24% Similarity=0.337 Sum_probs=29.0
Q ss_pred ccccccccccc-Cc-------EEcCCCCcccHhhHHHhccCC---CCCCCCCc
Q 011050 203 FDCTLCLKLLY-EP-------ITTPCGHSFCRSCLFQSMDRG---NKCPLCRA 244 (494)
Q Consensus 203 ~~C~iC~~~~~-~P-------v~~~cgh~fc~~Cl~~~~~~~---~~CP~Cr~ 244 (494)
-.|.+|++... .+ +...|-|.||..|+..|-... ..||.||.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 56999998543 22 223799999999999887642 23555554
No 415
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=72.78 E-value=14 Score=37.37 Aligned_cols=94 Identities=19% Similarity=0.158 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCc---ccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHH
Q 011050 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP---IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 124 (494)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 124 (494)
..+.+.|.-|+..|+++.|+.+|.++-....+.. ..+.|.-.+-+.+++| ....
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw-----------------------~hv~ 207 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNW-----------------------GHVL 207 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcch-----------------------hhhh
Confidence 3455677778889999999999999877765432 4455555666677887 4444
Q ss_pred HHHHHHhhc----c---c-cchHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 011050 125 KDAEKLLNL----Q---S-NSMKSHLLKANALILLERYDMARDAILSG 164 (494)
Q Consensus 125 ~~~~~al~l----~---p-~~~~a~~~~g~~~~~~~~~~~A~~~~~~a 164 (494)
....+|.+. . + -.++..-..|.+...+++|..|..+|..+
T Consensus 208 sy~~~A~st~~~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 208 SYISKAESTPDANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred hHHHHHHhCchhhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 444554443 1 1 12345666788888888999998887765
No 416
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=72.74 E-value=3.6 Score=47.48 Aligned_cols=49 Identities=27% Similarity=0.696 Sum_probs=35.0
Q ss_pred CCCcccccccccc--cccCc-EEcCCCCcccHhhHHHhccCC----------CCCCCCCccc
Q 011050 198 ERTDDFDCTLCLK--LLYEP-ITTPCGHSFCRSCLFQSMDRG----------NKCPLCRAVL 246 (494)
Q Consensus 198 ~~~~~~~C~iC~~--~~~~P-v~~~cgh~fc~~Cl~~~~~~~----------~~CP~Cr~~~ 246 (494)
....+--|-||+- +...| +.+.|||.|+..|....+.+. -.||+|..++
T Consensus 3482 kQD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~I 3543 (3738)
T KOG1428|consen 3482 KQDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKI 3543 (3738)
T ss_pred hcccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchh
Confidence 3455667999984 33455 568999999999987644431 1599998876
No 417
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=72.20 E-value=1 Score=25.69 Aligned_cols=22 Identities=27% Similarity=0.714 Sum_probs=11.6
Q ss_pred ccHhhHHHhccCCCCCCCCCcc
Q 011050 224 FCRSCLFQSMDRGNKCPLCRAV 245 (494)
Q Consensus 224 fc~~Cl~~~~~~~~~CP~Cr~~ 245 (494)
||..|-.........||.|..+
T Consensus 1 ~Cp~CG~~~~~~~~fC~~CG~~ 22 (23)
T PF13240_consen 1 YCPNCGAEIEDDAKFCPNCGTP 22 (23)
T ss_pred CCcccCCCCCCcCcchhhhCCc
Confidence 3445544434445567777654
No 418
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=72.07 E-value=3.3 Score=35.92 Aligned_cols=19 Identities=16% Similarity=0.534 Sum_probs=16.2
Q ss_pred cccccccccccccCcEEcC
Q 011050 201 DDFDCTLCLKLLYEPITTP 219 (494)
Q Consensus 201 ~~~~C~iC~~~~~~Pv~~~ 219 (494)
++..||||++.-.+.|.+-
T Consensus 1 ed~~CpICme~PHNAVLLl 19 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLL 19 (162)
T ss_pred CCccCceeccCCCceEEEE
Confidence 3578999999999998874
No 419
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=71.85 E-value=18 Score=33.96 Aligned_cols=115 Identities=13% Similarity=0.137 Sum_probs=61.0
Q ss_pred HHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHh---h----hccCCCCCccccccCCCCCchhHHHHHHHHHHH
Q 011050 58 FRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQ---F----LKHRPPSASEYRPLNGLDPTTHAELALKDAEKL 130 (494)
Q Consensus 58 ~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a 130 (494)
|..|+|+.|+....-||+.+-.-|.-|.. ....+-..+ + .+++.+.+..+ -..+.....-
T Consensus 94 ~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R-~~~t~vaeev~~~A~~~~~ag~~~e~~~------------~~~~~~l~~~ 160 (230)
T PHA02537 94 FDIGDFDGALEIAEYALEHGLTMPDQFRR-TLANFVAEEVANAALKAASAGESVEPYF------------LRVFLDLTTE 160 (230)
T ss_pred eeccCHHHHHHHHHHHHHcCCCCCccccC-CchHHHHHHHHHHHHHHHHcCCCCChHH------------HHHHHHHHhc
Confidence 78899999999999999885443332221 111111111 1 01111100000 1111111111
Q ss_pred hhccccchHHHH--HHHHHHH---------HHHHHHHHHHHHHccccCCCCCchhHHHHHHHHhhhhh
Q 011050 131 LNLQSNSMKSHL--LKANALI---------LLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTAS 187 (494)
Q Consensus 131 l~l~p~~~~a~~--~~g~~~~---------~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~ 187 (494)
.++ |+.+.|-+ ..|..+. ..++...|+.++++|+++||.- -++..++.+++.++.
T Consensus 161 ~dm-pd~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~-GVK~~i~~l~~~lr~ 226 (230)
T PHA02537 161 WDM-PDEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC-GVKKDIERLERRLKA 226 (230)
T ss_pred CCC-ChHHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC-ChHHHHHHHHHHHhh
Confidence 111 55555544 4455552 3467889999999999999653 355666777776653
No 420
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=70.99 E-value=3.9 Score=42.09 Aligned_cols=78 Identities=17% Similarity=0.159 Sum_probs=65.7
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHhc---------cCC---------CCcccccChhHHHHHHHhhhccCCCCCcccccc
Q 011050 50 LVQKGNRAFRESNFEEAISNYSRANN---------IKP---------GDPIVLGNRSSAYIRISQFLKHRPPSASEYRPL 111 (494)
Q Consensus 50 ~~~~g~~~~~~~~~~~Ai~~y~~al~---------~~p---------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 111 (494)
+-..|-.+|+.|.|+-++.+|.+|++ +.| +...+++|.|..|...|+.
T Consensus 286 ~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grP-------------- 351 (696)
T KOG2471|consen 286 NNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRP-------------- 351 (696)
T ss_pred ecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCc--------------
Confidence 34577788999999999999999995 122 2348899999999999999
Q ss_pred CCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Q 011050 112 NGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALIL 150 (494)
Q Consensus 112 ~~~~~~~~~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~ 150 (494)
-.|.+=+.+++..--.++..|.++|.|...
T Consensus 352 ---------l~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 352 ---------LLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred ---------HHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 899999999999988999999999998743
No 421
>PRK04023 DNA polymerase II large subunit; Validated
Probab=70.91 E-value=2.8 Score=46.81 Aligned_cols=62 Identities=16% Similarity=0.307 Sum_probs=40.7
Q ss_pred CCcccccccccccccCcEEcCCCC-----cccHhhHHHhccCCCCCCCCCcccccCCCCCcccccHHHHHHH
Q 011050 199 RTDDFDCTLCLKLLYEPITTPCGH-----SFCRSCLFQSMDRGNKCPLCRAVLFITPRTCAVSVTLNSIIQK 265 (494)
Q Consensus 199 ~~~~~~C~iC~~~~~~Pv~~~cgh-----~fc~~Cl~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~l~~~~~~ 265 (494)
......|+-|........+..||. .||..| ++......||.|...+... ......++++..+
T Consensus 623 EVg~RfCpsCG~~t~~frCP~CG~~Te~i~fCP~C--G~~~~~y~CPKCG~El~~~---s~~~i~l~~~~~~ 689 (1121)
T PRK04023 623 EIGRRKCPSCGKETFYRRCPFCGTHTEPVYRCPRC--GIEVEEDECEKCGREPTPY---SKRKIDLKELYDR 689 (1121)
T ss_pred cccCccCCCCCCcCCcccCCCCCCCCCcceeCccc--cCcCCCCcCCCCCCCCCcc---ceEEecHHHHHHH
Confidence 445668999998865555667985 599999 3334456799999987432 2333444554443
No 422
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=70.85 E-value=16 Score=35.94 Aligned_cols=88 Identities=23% Similarity=0.157 Sum_probs=61.7
Q ss_pred HHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhc--cccchHHHHHHH
Q 011050 68 SNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNL--QSNSMKSHLLKA 145 (494)
Q Consensus 68 ~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l--~p~~~~a~~~~g 145 (494)
..|+-...+.| ++.+-.|||.+..+..-. ..++...+....- -..+...|-.+|
T Consensus 317 aLYdaL~~~ap-SPvV~LNRAVAla~~~Gp-----------------------~agLa~ve~L~~~~~L~gy~~~h~~Ra 372 (415)
T COG4941 317 ALYDALEQAAP-SPVVTLNRAVALAMREGP-----------------------AAGLAMVEALLARPRLDGYHLYHAARA 372 (415)
T ss_pred HHHHHHHHhCC-CCeEeehHHHHHHHhhhH-----------------------HhHHHHHHHhhcccccccccccHHHHH
Confidence 34444334444 577888999887766655 5666655554443 235666777889
Q ss_pred HHHHHHHHHHHHHHHHHccccCCCCCchhHHHHH
Q 011050 146 NALILLERYDMARDAILSGLQVDPFSNPLQASLQ 179 (494)
Q Consensus 146 ~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~ 179 (494)
..+..+|+.++|...|++++.+.++..+......
T Consensus 373 dlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~ 406 (415)
T COG4941 373 DLLARLGRVEEARAAYDRAIALARNAAERAFLRQ 406 (415)
T ss_pred HHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 9999999999999999999999888776544333
No 423
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.22 E-value=5.6 Score=43.23 Aligned_cols=41 Identities=22% Similarity=0.588 Sum_probs=27.8
Q ss_pred cccccccccccc-------CcEEcCCCCcccHhhHHHhccCCCCCCCCC
Q 011050 202 DFDCTLCLKLLY-------EPITTPCGHSFCRSCLFQSMDRGNKCPLCR 243 (494)
Q Consensus 202 ~~~C~iC~~~~~-------~Pv~~~cgh~fc~~Cl~~~~~~~~~CP~Cr 243 (494)
+-.|..|.++.. .-+.+.|||.|+..|+....-... |-.|.
T Consensus 784 e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~-~~~~~ 831 (846)
T KOG2066|consen 784 EERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA-CNIES 831 (846)
T ss_pred hhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc-cChhh
Confidence 348999998654 235689999999999976443222 55443
No 424
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=69.79 E-value=74 Score=34.39 Aligned_cols=117 Identities=14% Similarity=0.096 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCC------------------cccccChhHHHHHHHhhhccCCCCCccc
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD------------------PIVLGNRSSAYIRISQFLKHRPPSASEY 108 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~------------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 108 (494)
+.-|..=|..-++..+|+.|.....+|...-.+. ..+|+..+...-..|-+
T Consensus 425 a~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtf----------- 493 (835)
T KOG2047|consen 425 AEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTF----------- 493 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccH-----------
Confidence 4456667777788899999999999998763321 14455555555555556
Q ss_pred cccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHhhhh
Q 011050 109 RPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTA 186 (494)
Q Consensus 109 ~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~ 186 (494)
+.--..|++.+++.=--|+...+.|..+.....+++|.+.|++++.+-+--....-...-+.+.++
T Consensus 494 ------------estk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ 559 (835)
T KOG2047|consen 494 ------------ESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIK 559 (835)
T ss_pred ------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHH
Confidence 666678899999887788888888999999999999999999999997654433333333444444
No 425
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=69.08 E-value=13 Score=37.56 Aligned_cols=104 Identities=11% Similarity=0.001 Sum_probs=78.8
Q ss_pred HhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhccccch
Q 011050 59 RESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSM 138 (494)
Q Consensus 59 ~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~ 138 (494)
+..-.++-+..-..++..+|+...+|+.|..++.+.+.. +...-++.++++++.||.+.
T Consensus 87 k~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~---------------------~~~~EL~lcek~L~~D~RNf 145 (421)
T KOG0529|consen 87 KQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHS---------------------DWNTELQLCEKALKQDPRNF 145 (421)
T ss_pred HHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCc---------------------hHHHHHHHHHHHHhcCcccc
Confidence 333556677788889999999999999999998765532 11778899999999999999
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHccccCCCCCchhHHHHHHHHh
Q 011050 139 KSHLLKANALILLER----YDMARDAILSGLQVDPFSNPLQASLQNLER 183 (494)
Q Consensus 139 ~a~~~~g~~~~~~~~----~~~A~~~~~~al~l~p~~~~~~~~~~~~~~ 183 (494)
.+|-.+-.+...... ..+=++...+++.-|+.|-.++.....+-+
T Consensus 146 h~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~ 194 (421)
T KOG0529|consen 146 HAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLS 194 (421)
T ss_pred cchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHH
Confidence 988877777654333 456677888888888888777766555533
No 426
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=69.06 E-value=7.2 Score=29.60 Aligned_cols=32 Identities=28% Similarity=0.266 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHhcc
Q 011050 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNI 76 (494)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~ 76 (494)
..+..++.+|...=..|+|++|+..|.+|+++
T Consensus 4 ~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 4 ERAHFLVTQAFDEDEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHH
Confidence 35778888999999999999999999999985
No 427
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=68.91 E-value=12 Score=36.30 Aligned_cols=64 Identities=14% Similarity=0.130 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHH
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (494)
...+...+..+...|+++.++...++-+..+|.+-.+|..+-.+|+..|+. ..|+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~-----------------------~~ai~~ 209 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQ-----------------------SAAIRA 209 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCc-----------------------hHHHHH
Confidence 456677888899999999999999999999999999999999999999999 888887
Q ss_pred HHHHhhc
Q 011050 127 AEKLLNL 133 (494)
Q Consensus 127 ~~~al~l 133 (494)
|++.-++
T Consensus 210 y~~l~~~ 216 (280)
T COG3629 210 YRQLKKT 216 (280)
T ss_pred HHHHHHH
Confidence 7776553
No 428
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=68.85 E-value=6.3 Score=38.03 Aligned_cols=43 Identities=16% Similarity=-0.014 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHc
Q 011050 121 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILS 163 (494)
Q Consensus 121 ~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~ 163 (494)
.+|+...++++.+||-+-..+..+-..|..+|+--.|+++|++
T Consensus 296 neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyer 338 (361)
T COG3947 296 NEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYER 338 (361)
T ss_pred HHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHH
Confidence 6666666666666666666666666666666655555555543
No 429
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=68.73 E-value=24 Score=27.07 Aligned_cols=43 Identities=16% Similarity=0.096 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhhccccchHHHHHH---HHHHHHHHHHHHHHHHHHc
Q 011050 121 ELALKDAEKLLNLQSNSMKSHLLK---ANALILLERYDMARDAILS 163 (494)
Q Consensus 121 ~~a~~~~~~al~l~p~~~~a~~~~---g~~~~~~~~~~~A~~~~~~ 163 (494)
.+|+...+++++..++....+..+ ..+|+..|+|++++++...
T Consensus 23 ~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 23 QQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999988776655554 4578899999999887543
No 430
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=68.10 E-value=9.3 Score=36.68 Aligned_cols=59 Identities=17% Similarity=-0.069 Sum_probs=45.2
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHH
Q 011050 123 ALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (494)
Q Consensus 123 a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 181 (494)
|.+.|.+|+.+.|.+-..|..+|.++...|+.-.|+=+|-+++...--++.+...+..+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~l 59 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKL 59 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 56889999999999999999999999999999999999999986543345544444433
No 431
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=67.80 E-value=39 Score=35.04 Aligned_cols=104 Identities=13% Similarity=0.147 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHH
Q 011050 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (494)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (494)
.+.+....-......||.-.|-.....++...|.++....-++.++..+|.| +.++.
T Consensus 288 ~~~~~~~si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~y-----------------------e~~~~ 344 (831)
T PRK15180 288 QIREITLSITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYY-----------------------EQAYQ 344 (831)
T ss_pred chhHHHHHHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhH-----------------------HHHHH
Confidence 3455555566677889999999999999999999999999999999999999 77776
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCc
Q 011050 126 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSN 172 (494)
Q Consensus 126 ~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~ 172 (494)
+...+-..-..-.++..-+-..+.+++++++|.....-.|.-.-+++
T Consensus 345 ~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ 391 (831)
T PRK15180 345 DISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDE 391 (831)
T ss_pred HhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCCh
Confidence 66555544444445555566667788888888877666555443444
No 432
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=66.01 E-value=55 Score=24.64 Aligned_cols=32 Identities=28% Similarity=0.395 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHhc
Q 011050 44 YTHVFDLVQKGNRAFRESNFEEAISNYSRANN 75 (494)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~ 75 (494)
...+..+..+|...=..|+|++|+.+|.+|++
T Consensus 3 ~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 3 LQKAIELVKKAIEEDNAGNYEEALRLYQHALE 34 (75)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34567788888888888888888888877766
No 433
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=65.43 E-value=24 Score=32.78 Aligned_cols=61 Identities=10% Similarity=0.059 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHH
Q 011050 121 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (494)
Q Consensus 121 ~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 181 (494)
.+|+.+++.-++-+|.+...-..+-+.|+..|+|++|...++-+-++.|++..-....+.+
T Consensus 18 ~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~l 78 (273)
T COG4455 18 QDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHL 78 (273)
T ss_pred HHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHH
Confidence 8999999999999999998888888999999999999999999999999887644444333
No 434
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.23 E-value=4.5 Score=29.89 Aligned_cols=28 Identities=25% Similarity=0.622 Sum_probs=21.6
Q ss_pred CCCCcccHhhHHHhccCCCCCCCCCccccc
Q 011050 219 PCGHSFCRSCLFQSMDRGNKCPLCRAVLFI 248 (494)
Q Consensus 219 ~cgh~fc~~Cl~~~~~~~~~CP~Cr~~~~~ 248 (494)
.-.+|||..|.+..+ +..||-|...+..
T Consensus 26 tfEcTFCadCae~~l--~g~CPnCGGelv~ 53 (84)
T COG3813 26 TFECTFCADCAENRL--HGLCPNCGGELVA 53 (84)
T ss_pred EEeeehhHhHHHHhh--cCcCCCCCchhhc
Confidence 345789999988655 4589999998754
No 435
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=64.89 E-value=11 Score=28.71 Aligned_cols=33 Identities=15% Similarity=0.282 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcc
Q 011050 44 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNI 76 (494)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~ 76 (494)
...+..++.+|...=..|+|++|..+|..+++.
T Consensus 3 l~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 3 LEQAAELIRLALEKEEEGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 345778888999999999999999999999884
No 436
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=64.80 E-value=57 Score=24.46 Aligned_cols=32 Identities=25% Similarity=0.407 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHhc
Q 011050 44 YTHVFDLVQKGNRAFRESNFEEAISNYSRANN 75 (494)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~ 75 (494)
...+..+..+|..+=..|+|++|+.+|.+|++
T Consensus 5 ~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 5 LSKAKELISKALKADEAGDYEEALELYKKAIE 36 (77)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44566777777777778888888888777665
No 437
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=64.74 E-value=11 Score=28.85 Aligned_cols=35 Identities=23% Similarity=0.331 Sum_probs=31.0
Q ss_pred hhHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcc
Q 011050 42 DRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNI 76 (494)
Q Consensus 42 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~ 76 (494)
..++.|..+.++|..+=..|+.++|+.+|.++++.
T Consensus 3 ~~~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~ 37 (79)
T cd02679 3 GYYKQAFEEISKALRADEWGDKEQALAHYRKGLRE 37 (79)
T ss_pred hHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHH
Confidence 34677899999999999999999999999999875
No 438
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.60 E-value=16 Score=38.97 Aligned_cols=70 Identities=16% Similarity=0.107 Sum_probs=59.7
Q ss_pred cccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhcc------ccchHHHHHHHHHHHHHHHH
Q 011050 81 PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQ------SNSMKSHLLKANALILLERY 154 (494)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~------p~~~~a~~~~g~~~~~~~~~ 154 (494)
+.+++|-|.-.++..+| .-+++.|.+.+..= -.+.+....++-||..+.+.
T Consensus 354 H~iLWn~A~~~F~~~~Y-----------------------~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QL 410 (872)
T KOG4814|consen 354 HTLLWNTAKKLFKMEKY-----------------------VVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQL 410 (872)
T ss_pred HHHHHHhhHHHHHHHHH-----------------------HHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHH
Confidence 46788889999999999 89999999988643 34566777788899999999
Q ss_pred HHHHHHHHccccCCCCCch
Q 011050 155 DMARDAILSGLQVDPFSNP 173 (494)
Q Consensus 155 ~~A~~~~~~al~l~p~~~~ 173 (494)
+.|++++.+|=+.+|.+.-
T Consensus 411 D~A~E~~~EAE~~d~~~~l 429 (872)
T KOG4814|consen 411 DNAVEVYQEAEEVDRQSPL 429 (872)
T ss_pred HHHHHHHHHHHhhccccHH
Confidence 9999999999999987764
No 439
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=64.49 E-value=8.4 Score=39.36 Aligned_cols=32 Identities=19% Similarity=0.164 Sum_probs=27.8
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHcccc
Q 011050 135 SNSMKSHLLKANALILLERYDMARDAILSGLQ 166 (494)
Q Consensus 135 p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~ 166 (494)
+-+...+|..|.+|+.+++|.+|+..|...|-
T Consensus 161 ~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 161 ACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred chheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667899999999999999999999988763
No 440
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=64.31 E-value=12 Score=28.48 Aligned_cols=32 Identities=19% Similarity=0.195 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHhcc
Q 011050 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNI 76 (494)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~ 76 (494)
..+..++.+|...=..|+|++|+.+|.+|++.
T Consensus 4 ~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~ 35 (75)
T cd02684 4 EKAIALVVQAVKKDQRGDAAAALSLYCSALQY 35 (75)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45778889999999999999999999999884
No 441
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=64.15 E-value=6.4 Score=34.26 Aligned_cols=45 Identities=20% Similarity=0.460 Sum_probs=32.6
Q ss_pred cccccccccccccCcEEcCCCC-----cccHhhHHHhccCC--CCCCCCCccc
Q 011050 201 DDFDCTLCLKLLYEPITTPCGH-----SFCRSCLFQSMDRG--NKCPLCRAVL 246 (494)
Q Consensus 201 ~~~~C~iC~~~~~~Pv~~~cgh-----~fc~~Cl~~~~~~~--~~CP~Cr~~~ 246 (494)
....|-||.+--. +...||.- .-+.+|+..|...+ ..|+.|+.+.
T Consensus 7 ~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y 58 (162)
T PHA02825 7 MDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPY 58 (162)
T ss_pred CCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeE
Confidence 4567999987653 33446554 33899999999854 4699999876
No 442
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=64.09 E-value=14 Score=31.86 Aligned_cols=36 Identities=22% Similarity=0.176 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHH
Q 011050 121 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDM 156 (494)
Q Consensus 121 ~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~ 156 (494)
.-|.+.++.++..+|++..+...++.+|.++|.-.+
T Consensus 87 ~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 87 QWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 888889999999999998998888998888876544
No 443
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=63.24 E-value=26 Score=35.40 Aligned_cols=92 Identities=17% Similarity=0.125 Sum_probs=68.6
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhH--HHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHH
Q 011050 50 LVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSS--AYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDA 127 (494)
Q Consensus 50 ~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 127 (494)
.+..+....-.|+|+.|-..|...+. +|.- -.+--|+. .-..+|.+ +.|..++
T Consensus 123 hlLeAQaal~eG~~~~Ar~kfeAMl~-dPEt-RllGLRgLyleAqr~Gar-----------------------eaAr~yA 177 (531)
T COG3898 123 HLLEAQAALLEGDYEDARKKFEAMLD-DPET-RLLGLRGLYLEAQRLGAR-----------------------EAARHYA 177 (531)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHhc-ChHH-HHHhHHHHHHHHHhcccH-----------------------HHHHHHH
Confidence 34567778889999999999987776 3321 11122222 12345667 8899999
Q ss_pred HHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHcccc
Q 011050 128 EKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQ 166 (494)
Q Consensus 128 ~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~ 166 (494)
..+-.+-|.-+.+..-.-...+..|+++.|+........
T Consensus 178 e~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 178 ERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRA 216 (531)
T ss_pred HHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 999999999999988888889999999999998876544
No 444
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=62.88 E-value=15 Score=27.72 Aligned_cols=32 Identities=22% Similarity=0.402 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHhcc
Q 011050 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNI 76 (494)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~ 76 (494)
..+..+..+|...=+.|+|++|+.+|.+|++.
T Consensus 4 ~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~ 35 (75)
T cd02656 4 QQAKELIKQAVKEDEDGNYEEALELYKEALDY 35 (75)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45677888888888999999999999999874
No 445
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=62.86 E-value=68 Score=29.93 Aligned_cols=63 Identities=14% Similarity=0.054 Sum_probs=55.2
Q ss_pred HHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhc
Q 011050 54 GNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNL 133 (494)
Q Consensus 54 g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l 133 (494)
...+.+.+..++||.....-++.+|.+.....-+-..+.-.|+| .+|+..++-+-++
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw-----------------------~kAl~Ql~l~a~l 64 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDW-----------------------EKALAQLNLAATL 64 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchH-----------------------HHHHHHHHHHhhc
Confidence 34667888899999999999999999998888877888889999 9999999999999
Q ss_pred cccchH
Q 011050 134 QSNSMK 139 (494)
Q Consensus 134 ~p~~~~ 139 (494)
+|++..
T Consensus 65 ~p~~t~ 70 (273)
T COG4455 65 SPQDTV 70 (273)
T ss_pred Ccccch
Confidence 997744
No 446
>PHA02862 5L protein; Provisional
Probab=61.95 E-value=6.2 Score=33.66 Aligned_cols=44 Identities=20% Similarity=0.440 Sum_probs=31.5
Q ss_pred cccccccccccCcEEcCCCC-----cccHhhHHHhccCC--CCCCCCCcccc
Q 011050 203 FDCTLCLKLLYEPITTPCGH-----SFCRSCLFQSMDRG--NKCPLCRAVLF 247 (494)
Q Consensus 203 ~~C~iC~~~~~~Pv~~~cgh-----~fc~~Cl~~~~~~~--~~CP~Cr~~~~ 247 (494)
-.|-||.+.-.+. .-||.- .-+..||.+|+..+ ..|++|+.+..
T Consensus 3 diCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~ 53 (156)
T PHA02862 3 DICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN 53 (156)
T ss_pred CEEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence 3588888875554 346543 46789999999743 46999998763
No 447
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=61.82 E-value=18 Score=38.87 Aligned_cols=88 Identities=18% Similarity=0.063 Sum_probs=63.6
Q ss_pred HhcChHHHHHHHHHHhcc-----CCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhc
Q 011050 59 RESNFEEAISNYSRANNI-----KPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNL 133 (494)
Q Consensus 59 ~~~~~~~Ai~~y~~al~~-----~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l 133 (494)
..+|.+.|+.+|..|..- .-..+.+.+.+|.+|.+-.-. ... +...|+..+.++-.+
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~-----------------~~~-d~~~A~~~~~~aA~~ 322 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV-----------------EKI-DYEKALKLYTKAAEL 322 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC-----------------ccc-cHHHHHHHHHHHHhc
Confidence 347899999999999771 112667888889988774321 000 227788888888877
Q ss_pred cccchHHHHHHHHHHHHHH---HHHHHHHHHHcccc
Q 011050 134 QSNSMKSHLLKANALILLE---RYDMARDAILSGLQ 166 (494)
Q Consensus 134 ~p~~~~a~~~~g~~~~~~~---~~~~A~~~~~~al~ 166 (494)
. ++.+.+.+|.+|.... ++..|..+|..|.+
T Consensus 323 g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~ 356 (552)
T KOG1550|consen 323 G--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAK 356 (552)
T ss_pred C--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHH
Confidence 5 6778999999986544 67889999988864
No 448
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=60.90 E-value=1.3 Score=32.81 Aligned_cols=39 Identities=28% Similarity=0.581 Sum_probs=22.1
Q ss_pred cccccccccccCcEEcCCCCcccHhhHHHhccCCCCCCCCCccc
Q 011050 203 FDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVL 246 (494)
Q Consensus 203 ~~C~iC~~~~~~Pv~~~cgh~fc~~Cl~~~~~~~~~CP~Cr~~~ 246 (494)
..||.|...+. ..=||.+|..|-.. +.....||.|..+|
T Consensus 2 ~~CP~C~~~L~----~~~~~~~C~~C~~~-~~~~a~CPdC~~~L 40 (70)
T PF07191_consen 2 NTCPKCQQELE----WQGGHYHCEACQKD-YKKEAFCPDCGQPL 40 (70)
T ss_dssp -B-SSS-SBEE----EETTEEEETTT--E-EEEEEE-TTT-SB-
T ss_pred CcCCCCCCccE----EeCCEEECcccccc-ceecccCCCcccHH
Confidence 57999986643 22289999999764 33445799999987
No 449
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=59.98 E-value=28 Score=36.26 Aligned_cols=62 Identities=15% Similarity=0.078 Sum_probs=50.5
Q ss_pred HHHh-cChHHHHHHHHHHhccCCCCcccccChhHHHHHHHh-hhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhcc
Q 011050 57 AFRE-SNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQ-FLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQ 134 (494)
Q Consensus 57 ~~~~-~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~ 134 (494)
|.++ +.|.+--..|.+++..+|+++.+|..-|.=.+..+. . +.|-..+.++++.+
T Consensus 114 f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni-----------------------~saRalflrgLR~n 170 (568)
T KOG2396|consen 114 FCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNI-----------------------ESARALFLRGLRFN 170 (568)
T ss_pred HHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccch-----------------------HHHHHHHHHHhhcC
Confidence 3344 448888889999999999999999887766666665 4 88889999999999
Q ss_pred ccchHHH
Q 011050 135 SNSMKSH 141 (494)
Q Consensus 135 p~~~~a~ 141 (494)
|++++.|
T Consensus 171 pdsp~Lw 177 (568)
T KOG2396|consen 171 PDSPKLW 177 (568)
T ss_pred CCChHHH
Confidence 9998754
No 450
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=59.58 E-value=15 Score=35.17 Aligned_cols=62 Identities=10% Similarity=-0.117 Sum_probs=48.9
Q ss_pred HHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHH
Q 011050 66 AISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKA 145 (494)
Q Consensus 66 Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~a~~~~g 145 (494)
|..+|.+|+.+.|.+...|..+|..+...++. -.|+=.|-+++-..--++.|.-++.
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~-----------------------l~avy~y~Rsl~~~~Pf~~A~~NL~ 57 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDD-----------------------LDAVYYYIRSLAVRIPFPSARENLQ 57 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-H-----------------------HHHHHHHHHHHSSSB--HHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccch-----------------------HHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 78899999999999999999999999998888 7888888888866555677777776
Q ss_pred HHHHH
Q 011050 146 NALIL 150 (494)
Q Consensus 146 ~~~~~ 150 (494)
..+..
T Consensus 58 ~lf~~ 62 (278)
T PF10373_consen 58 KLFEK 62 (278)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66655
No 451
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.49 E-value=4.3 Score=38.61 Aligned_cols=27 Identities=41% Similarity=0.928 Sum_probs=19.9
Q ss_pred CCCcccHhhHHHhccC-------------CCCCCCCCccc
Q 011050 220 CGHSFCRSCLFQSMDR-------------GNKCPLCRAVL 246 (494)
Q Consensus 220 cgh~fc~~Cl~~~~~~-------------~~~CP~Cr~~~ 246 (494)
|.--+|.+||.+|+.. +..||.||..+
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~f 364 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNF 364 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhce
Confidence 4556678999887652 34699999875
No 452
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=59.34 E-value=43 Score=34.31 Aligned_cols=104 Identities=19% Similarity=0.154 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHhcc-----------CCCCcccccChhHHHHHHHhhhccCCCCCccccccCCC
Q 011050 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNI-----------KPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGL 114 (494)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~-----------~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (494)
.+..+.++|..+++...|..|+...-.|=+. -.+.+.+-.....||+.+.+.
T Consensus 162 mglg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLkni----------------- 224 (568)
T KOG2561|consen 162 MGLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNI----------------- 224 (568)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhccc-----------------
Confidence 4567889999999999999999887666332 333444444567788888886
Q ss_pred CCchhHHHHHHHHHHHhhc------------c-ccch------HHHHHHHHHHHHHHHHHHHHHHHHcccc
Q 011050 115 DPTTHAELALKDAEKLLNL------------Q-SNSM------KSHLLKANALILLERYDMARDAILSGLQ 166 (494)
Q Consensus 115 ~~~~~~~~a~~~~~~al~l------------~-p~~~------~a~~~~g~~~~~~~~~~~A~~~~~~al~ 166 (494)
.+-.+|..-+..+++.+.. . +..+ ..+..-|-+.+..|+-++|.+.++.|..
T Consensus 225 tcL~DAe~RL~ra~kgf~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 225 TCLPDAEVRLVRARKGFERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred ccCChHHHHHHHHHHhhhhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 2333444444444443322 1 2222 2344447778888888888888776643
No 453
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=57.88 E-value=32 Score=38.05 Aligned_cols=32 Identities=9% Similarity=-0.208 Sum_probs=27.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHcccc
Q 011050 135 SNSMKSHLLKANALILLERYDMARDAILSGLQ 166 (494)
Q Consensus 135 p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~ 166 (494)
..+-.|-|.+|.-|...|++-+|+..|.+|-.
T Consensus 964 sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 964 SGDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 44666889999999999999999999988754
No 454
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=57.81 E-value=33 Score=31.85 Aligned_cols=65 Identities=12% Similarity=0.119 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHhccCCC------CcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHH
Q 011050 50 LVQKGNRAFRESNFEEAISNYSRANNIKPG------DPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 123 (494)
Q Consensus 50 ~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 123 (494)
+...|+......-+.+|+..|.+|++.... ...+++..|..+.++|++ ++|
T Consensus 128 yR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~-----------------------~eA 184 (214)
T PF09986_consen 128 YRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNY-----------------------DEA 184 (214)
T ss_pred hhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCH-----------------------HHH
Confidence 334444444445567888999999877543 246778889999999999 999
Q ss_pred HHHHHHHhhccccc
Q 011050 124 LKDAEKLLNLQSNS 137 (494)
Q Consensus 124 ~~~~~~al~l~p~~ 137 (494)
++.+.+++..-..+
T Consensus 185 ~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 185 KRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHHcCCCCC
Confidence 99999999865433
No 455
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=57.71 E-value=5 Score=37.06 Aligned_cols=38 Identities=29% Similarity=0.670 Sum_probs=28.9
Q ss_pred cccccccccCcEEcCCCC-cccHhhHHHhccCCCCCCCCCccc
Q 011050 205 CTLCLKLLYEPITTPCGH-SFCRSCLFQSMDRGNKCPLCRAVL 246 (494)
Q Consensus 205 C~iC~~~~~~Pv~~~cgh-~fc~~Cl~~~~~~~~~CP~Cr~~~ 246 (494)
|..|.+--..-+.+||.| .+|..|-.. ...||.|+...
T Consensus 161 Cr~C~~~~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~ 199 (207)
T KOG1100|consen 161 CRKCGEREATVLLLPCRHLCLCGICDES----LRICPICRSPK 199 (207)
T ss_pred ceecCcCCceEEeecccceEeccccccc----CccCCCCcChh
Confidence 999998877767789988 467888432 34599999764
No 456
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=57.27 E-value=25 Score=34.91 Aligned_cols=80 Identities=19% Similarity=-0.002 Sum_probs=53.4
Q ss_pred ChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhccccchHHH
Q 011050 62 NFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSH 141 (494)
Q Consensus 62 ~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~a~ 141 (494)
-.+..+..|.+|++.+|++..++..+-.+..+...- ++..+..++++..+|+++..|
T Consensus 46 ~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~-----------------------~~l~~~we~~l~~~~~~~~LW 102 (321)
T PF08424_consen 46 LAERKLSILERALKHNPDSERLLLGYLEEGEKVWDS-----------------------EKLAKKWEELLFKNPGSPELW 102 (321)
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCH-----------------------HHHHHHHHHHHHHCCCChHHH
Confidence 345678899999999998888777644443333333 667788999999999887655
Q ss_pred HHHHHHHHHHH-----HHHHHHHHHHcccc
Q 011050 142 LLKANALILLE-----RYDMARDAILSGLQ 166 (494)
Q Consensus 142 ~~~g~~~~~~~-----~~~~A~~~~~~al~ 166 (494)
... +-+.++ .+.+..+.|.++++
T Consensus 103 ~~y--L~~~q~~~~~f~v~~~~~~y~~~l~ 130 (321)
T PF08424_consen 103 REY--LDFRQSNFASFTVSDVRDVYEKCLR 130 (321)
T ss_pred HHH--HHHHHHHhccCcHHHHHHHHHHHHH
Confidence 432 222222 35566666666553
No 457
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=57.24 E-value=15 Score=36.47 Aligned_cols=57 Identities=18% Similarity=0.223 Sum_probs=45.1
Q ss_pred hhhHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCC--------CcccccChhHHHHHHHhh
Q 011050 41 WDRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPG--------DPIVLGNRSSAYIRISQF 97 (494)
Q Consensus 41 ~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~--------~~~~~~~~a~~~~~~~~~ 97 (494)
.+..+.+..++..|+.++..++|.+|+..|..|..+... +..+++-+|.+++.++++
T Consensus 35 s~~~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~ 99 (400)
T KOG4563|consen 35 SQKEKTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKE 99 (400)
T ss_pred hhHHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 356777899999999999999999999999999988543 235556666677666665
No 458
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=56.58 E-value=5.3 Score=37.89 Aligned_cols=36 Identities=31% Similarity=0.660 Sum_probs=28.9
Q ss_pred CCcccccccccccccCcEEcCC----CCcccHhhHHHhcc
Q 011050 199 RTDDFDCTLCLKLLYEPITTPC----GHSFCRSCLFQSMD 234 (494)
Q Consensus 199 ~~~~~~C~iC~~~~~~Pv~~~c----gh~fc~~Cl~~~~~ 234 (494)
....+.|.+|.+-+.+--...| +|.||..|-.....
T Consensus 265 ~~apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK 304 (352)
T KOG3579|consen 265 PSAPLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIK 304 (352)
T ss_pred CCCceeehhhhhhhccCceeecCCCcccceecccCHHHHH
Confidence 4456899999999998755555 89999999877654
No 459
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=56.47 E-value=6.1 Score=42.61 Aligned_cols=41 Identities=27% Similarity=0.665 Sum_probs=31.2
Q ss_pred cccccccccccccCc--EEcCCCCcccHhhHHHhccCCCCCCC
Q 011050 201 DDFDCTLCLKLLYEP--ITTPCGHSFCRSCLFQSMDRGNKCPL 241 (494)
Q Consensus 201 ~~~~C~iC~~~~~~P--v~~~cgh~fc~~Cl~~~~~~~~~CP~ 241 (494)
.-+.|.+|.-...-- +...|||..+.+|...|+..+..||.
T Consensus 1027 ~~~~C~~C~l~V~gss~~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1027 FTFQCAICHLAVRGSSNFCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred ceeeeeeEeeEeeccchhhccccccccHHHHHHHHhcCCcCCC
Confidence 445677776433322 44589999999999999999999996
No 460
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=55.46 E-value=9.1 Score=26.09 Aligned_cols=38 Identities=37% Similarity=0.847 Sum_probs=22.2
Q ss_pred cccccccccC--cEEcCCCC-----cccHhhHHHhcc--CCCCCCCC
Q 011050 205 CTLCLKLLYE--PITTPCGH-----SFCRSCLFQSMD--RGNKCPLC 242 (494)
Q Consensus 205 C~iC~~~~~~--Pv~~~cgh-----~fc~~Cl~~~~~--~~~~CP~C 242 (494)
|.||++.-.. |...||+- ..+..||..|+. ....|++|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 5677764332 56667653 458899999987 34568877
No 461
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=54.91 E-value=71 Score=34.53 Aligned_cols=97 Identities=20% Similarity=0.145 Sum_probs=75.3
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHH
Q 011050 50 LVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEK 129 (494)
Q Consensus 50 ~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 129 (494)
|...+...-.-|-|+.-...|++.+++.--.|..-.|.|+.+-...-+ .++.+.|++
T Consensus 480 Ws~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yf-----------------------eesFk~YEr 536 (835)
T KOG2047|consen 480 WSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYF-----------------------EESFKAYER 536 (835)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHH-----------------------HHHHHHHHc
Confidence 333444444558888899999999999888888888888887777777 999999999
Q ss_pred Hhhccc--cc---hHHHHHHHHHHHHHHHHHHHHHHHHccccCCC
Q 011050 130 LLNLQS--NS---MKSHLLKANALILLERYDMARDAILSGLQVDP 169 (494)
Q Consensus 130 al~l~p--~~---~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p 169 (494)
-+.+-+ .- ...|+-.....++..+.+.|.+.|++||+..|
T Consensus 537 gI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cp 581 (835)
T KOG2047|consen 537 GISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCP 581 (835)
T ss_pred CCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Confidence 999874 22 23455555566777889999999999999888
No 462
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=54.56 E-value=32 Score=26.22 Aligned_cols=46 Identities=13% Similarity=0.022 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchh
Q 011050 121 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPL 174 (494)
Q Consensus 121 ~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~ 174 (494)
..|+..+.+|+..|..- ..-.....|.+|++.|..+++..|+...-
T Consensus 4 ~~a~~l~~~Ave~D~~g--------~y~eAl~~Y~~aie~l~~~lk~e~d~~~k 49 (77)
T cd02683 4 LAAKEVLKRAVELDQEG--------RFQEALVCYQEGIDLLMQVLKGTKDEAKK 49 (77)
T ss_pred HHHHHHHHHHHHHHHhc--------cHHHHHHHHHHHHHHHHHHHhhCCCHHHH
Confidence 67888888888877421 11223456778888888888888866543
No 463
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=54.21 E-value=73 Score=34.72 Aligned_cols=84 Identities=19% Similarity=0.167 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHH
Q 011050 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (494)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (494)
.-.++...|..+.....+++|..+|.+.-. ..+.+.|++.+..| .
T Consensus 795 ~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~~ecly~le~f---------------------------~ 839 (1189)
T KOG2041|consen 795 KEDAFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQIECLYRLELF---------------------------G 839 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhHHHHHHHHHhh---------------------------h
Confidence 345677888999999999999999987543 34667888888888 3
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 011050 126 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSG 164 (494)
Q Consensus 126 ~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~a 164 (494)
.++....--|++.+.+-.+|..+...|--++|+..|.+.
T Consensus 840 ~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~ 878 (1189)
T KOG2041|consen 840 ELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRR 878 (1189)
T ss_pred hHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhc
Confidence 334433444666666666677776666667777666543
No 464
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=53.65 E-value=61 Score=38.15 Aligned_cols=109 Identities=11% Similarity=-0.105 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHH
Q 011050 49 DLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAE 128 (494)
Q Consensus 49 ~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 128 (494)
-+......|-+.+.|++|.+.|++.++.--+....|...|..++...+- ++|-..+.
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~-----------------------~aa~~lL~ 1588 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEA-----------------------EAARELLK 1588 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHH-----------------------HHHHHHHH
Confidence 4556677788889999999999999988778889999999999888887 88888999
Q ss_pred HHhhcccc--chHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHH
Q 011050 129 KLLNLQSN--SMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQN 180 (494)
Q Consensus 129 ~al~l~p~--~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~ 180 (494)
+|++.-|. +.+..-.-|+.-++.|+.+.+...|+..+.-.|.-.++|...-.
T Consensus 1589 rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid 1642 (1710)
T KOG1070|consen 1589 RALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYID 1642 (1710)
T ss_pred HHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHH
Confidence 99998887 77777777888889999999999999999999988888776543
No 465
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=53.52 E-value=22 Score=36.69 Aligned_cols=96 Identities=17% Similarity=0.121 Sum_probs=70.5
Q ss_pred HHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHh
Q 011050 52 QKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLL 131 (494)
Q Consensus 52 ~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al 131 (494)
..+..+-.-|+|+.|.+..+-+-..-..-..+..-|-....+++++ ++|+..+.-.+
T Consensus 328 l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~-----------------------~~a~s~a~~~l 384 (831)
T PRK15180 328 LRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARW-----------------------REALSTAEMML 384 (831)
T ss_pred HHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhH-----------------------HHHHHHHHHHh
Confidence 3455566779999988877766554444444444455567888999 99998888888
Q ss_pred hccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCC
Q 011050 132 NLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPF 170 (494)
Q Consensus 132 ~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~ 170 (494)
.-.-..++.....|-.-.++|-+++|.-.+++.+.++|.
T Consensus 385 ~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 385 SNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred ccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 766666666555555567889999999999999999884
No 466
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.33 E-value=40 Score=38.30 Aligned_cols=92 Identities=16% Similarity=0.170 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHH
Q 011050 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDA 127 (494)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 127 (494)
.....-|+..|..|.|+.|.-.|+.. +-|..+|..+..+|+| +.|++.+
T Consensus 1195 A~i~~vGdrcf~~~~y~aAkl~y~~v--------SN~a~La~TLV~Lgey-----------------------Q~AVD~a 1243 (1666)
T KOG0985|consen 1195 ANIQQVGDRCFEEKMYEAAKLLYSNV--------SNFAKLASTLVYLGEY-----------------------QGAVDAA 1243 (1666)
T ss_pred hhHHHHhHHHhhhhhhHHHHHHHHHh--------hhHHHHHHHHHHHHHH-----------------------HHHHHHh
Confidence 34566899999999999999999764 4478899999999999 8888888
Q ss_pred HHHhhccc-------------------------cchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCC
Q 011050 128 EKLLNLQS-------------------------NSMKSHLLKANALILLERYDMARDAILSGLQVDPF 170 (494)
Q Consensus 128 ~~al~l~p-------------------------~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~ 170 (494)
+||-.... -+++-+-.+-.-|...|.|++-+..++.+|-+...
T Consensus 1244 RKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERA 1311 (1666)
T KOG0985|consen 1244 RKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERA 1311 (1666)
T ss_pred hhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHH
Confidence 88743210 01111222223344467777777777777766543
No 467
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=53.10 E-value=51 Score=29.06 Aligned_cols=58 Identities=17% Similarity=-0.019 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHH
Q 011050 121 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASL 178 (494)
Q Consensus 121 ~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~ 178 (494)
+.+...+.-.--+.|..+..-..-|..+...|+|.+|+..++....-.|.++-++..+
T Consensus 27 ~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALl 84 (160)
T PF09613_consen 27 DDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALL 84 (160)
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHH
Confidence 5666666666678899999999999999999999999999999877777776554443
No 468
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=53.05 E-value=7.1 Score=35.50 Aligned_cols=43 Identities=28% Similarity=0.694 Sum_probs=36.2
Q ss_pred ccccccccccccCcEE-cCCCCcccHhhHHHhccCCCCCCCCCc
Q 011050 202 DFDCTLCLKLLYEPIT-TPCGHSFCRSCLFQSMDRGNKCPLCRA 244 (494)
Q Consensus 202 ~~~C~iC~~~~~~Pv~-~~cgh~fc~~Cl~~~~~~~~~CP~Cr~ 244 (494)
...|.+|..+....+. =+||-.|..+|+...+.....||.|+-
T Consensus 181 lk~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~~~~cphc~d 224 (235)
T KOG4718|consen 181 LKNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQRRDICPHCGD 224 (235)
T ss_pred HHHHhHhHHHhheeeccCcccchhhhHHHHHHhcccCcCCchhc
Confidence 4589999998877664 589999999999998888788999954
No 469
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=52.96 E-value=9.3 Score=22.71 Aligned_cols=28 Identities=21% Similarity=0.143 Sum_probs=23.0
Q ss_pred cChHHHHHHHHHHhccCCCCcccccChh
Q 011050 61 SNFEEAISNYSRANNIKPGDPIVLGNRS 88 (494)
Q Consensus 61 ~~~~~Ai~~y~~al~~~p~~~~~~~~~a 88 (494)
|+++.|...|.+++...|.+..+|...+
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 5678899999999999998887776543
No 470
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=52.24 E-value=9.5 Score=36.85 Aligned_cols=47 Identities=28% Similarity=0.558 Sum_probs=35.6
Q ss_pred CCccccccccccccc---CcEEcCCCCcccHhhHHHhccCC---CCCCCCCcc
Q 011050 199 RTDDFDCTLCLKLLY---EPITTPCGHSFCRSCLFQSMDRG---NKCPLCRAV 245 (494)
Q Consensus 199 ~~~~~~C~iC~~~~~---~Pv~~~cgh~fc~~Cl~~~~~~~---~~CP~Cr~~ 245 (494)
....|.||+-.+.-. -|+++.|||..-...+.....+| ..||.|-..
T Consensus 333 fHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~~ 385 (396)
T COG5109 333 FHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPEM 385 (396)
T ss_pred ccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCcc
Confidence 446688998776433 35889999999999998876665 469999543
No 471
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=52.21 E-value=7.7 Score=40.49 Aligned_cols=37 Identities=27% Similarity=0.723 Sum_probs=30.7
Q ss_pred CCCcccccccccccccC-cEEcCCCCcccHhhHHHhcc
Q 011050 198 ERTDDFDCTLCLKLLYE-PITTPCGHSFCRSCLFQSMD 234 (494)
Q Consensus 198 ~~~~~~~C~iC~~~~~~-Pv~~~cgh~fc~~Cl~~~~~ 234 (494)
.......|.+|.+.... .+...|||-||..|+...+.
T Consensus 66 ~~~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~ 103 (444)
T KOG1815|consen 66 KKKGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLG 103 (444)
T ss_pred CCCccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhh
Confidence 34567899999998885 56679999999999998765
No 472
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=52.01 E-value=31 Score=28.81 Aligned_cols=46 Identities=24% Similarity=0.207 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhhcccc------------chHHHHHHHHHHHHHHHHHHHHHHHHcccc
Q 011050 121 ELALKDAEKLLNLQSN------------SMKSHLLKANALILLERYDMARDAILSGLQ 166 (494)
Q Consensus 121 ~~a~~~~~~al~l~p~------------~~~a~~~~g~~~~~~~~~~~A~~~~~~al~ 166 (494)
.+|...+++|.+..-+ +.-.|-.++.++..+|+|++++.....+|.
T Consensus 26 ~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~ 83 (144)
T PF12968_consen 26 EEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALR 83 (144)
T ss_dssp HHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 8888899999876532 223577888899999999999888777765
No 473
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=51.87 E-value=1.5e+02 Score=30.20 Aligned_cols=160 Identities=14% Similarity=0.028 Sum_probs=99.7
Q ss_pred HHHHHHHhcChHH-HHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHh
Q 011050 53 KGNRAFRESNFEE-AISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLL 131 (494)
Q Consensus 53 ~g~~~~~~~~~~~-Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al 131 (494)
.-....+.|.|+. ++..=.+.+..+|....+|.-|-.++.....-....+ .+. +...++-+.....++
T Consensus 34 ~i~~~r~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~---~ek--------~~~ld~eL~~~~~~L 102 (421)
T KOG0529|consen 34 IIQKKREAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEP---LEK--------QALLDEELKYVESAL 102 (421)
T ss_pred HHHHHHhccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCH---HHH--------HHhhHHHHHHHHHHH
Confidence 3333446677764 7777778888899999988887766544332100000 000 112267778888999
Q ss_pred hccccchHHHHHHHHHHHHHHH--HHHHHHHHHccccCCCCCchhHHHHHHHHhhhhhhhccccCCCCCCCccccccccc
Q 011050 132 NLQSNSMKSHLLKANALILLER--YDMARDAILSGLQVDPFSNPLQASLQNLERTTASLIGRRIHGTPERTDDFDCTLCL 209 (494)
Q Consensus 132 ~l~p~~~~a~~~~g~~~~~~~~--~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~iC~ 209 (494)
+.+|+..-+|+.+..++...+. +..-+...+++++.||-|-.++.-..-+-........ . ..-.=.+|-
T Consensus 103 ~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~-----~----~~~El~ftt 173 (421)
T KOG0529|consen 103 KVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRN-----L----EKEELEFTT 173 (421)
T ss_pred HhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccc-----c----chhHHHHHH
Confidence 9999999999999999976543 5677888999999999888777655444333222211 0 111112344
Q ss_pred cc-ccCcEEcCCCCcccHhhHHHhcc
Q 011050 210 KL-LYEPITTPCGHSFCRSCLFQSMD 234 (494)
Q Consensus 210 ~~-~~~Pv~~~cgh~fc~~Cl~~~~~ 234 (494)
.. ..++.-++|.|. ++|+-..+.
T Consensus 174 ~~I~~nfSNYsaWhy--Rs~lL~~l~ 197 (421)
T KOG0529|consen 174 KLINDNFSNYSAWHY--RSLLLSTLH 197 (421)
T ss_pred HHHhccchhhhHHHH--HHHHHHHhc
Confidence 33 234555788885 677766443
No 474
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.56 E-value=24 Score=33.11 Aligned_cols=45 Identities=20% Similarity=0.368 Sum_probs=35.2
Q ss_pred CcccccccccccccCcEE----cCCCCcccHhhHHHhccCCCCCCCCCccc
Q 011050 200 TDDFDCTLCLKLLYEPIT----TPCGHSFCRSCLFQSMDRGNKCPLCRAVL 246 (494)
Q Consensus 200 ~~~~~C~iC~~~~~~Pv~----~~cgh~fc~~Cl~~~~~~~~~CP~Cr~~~ 246 (494)
...|.||+..-.|..-.. -+|||.|-.+.+.+.- .+.|++|....
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik--as~C~~C~a~y 157 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK--ASVCHVCGAAY 157 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHhh--hccccccCCcc
Confidence 457899998877666543 4999999999887643 56899999876
No 475
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=50.47 E-value=2e+02 Score=27.85 Aligned_cols=112 Identities=17% Similarity=0.158 Sum_probs=65.3
Q ss_pred HHHHHHHhcChHHHHHHHHHHhccCCC--CcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhH-HHHHHHHHH
Q 011050 53 KGNRAFRESNFEEAISNYSRANNIKPG--DPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHA-ELALKDAEK 129 (494)
Q Consensus 53 ~g~~~~~~~~~~~Ai~~y~~al~~~p~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~~~ 129 (494)
....++..++|++--..|.+...-..+ ....-+.+ +....+-+ .++..... ......++.
T Consensus 6 ~ir~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~--~~~~~~l~---------------D~~~~~~~~~~~~~~Lka 68 (277)
T PF13226_consen 6 DIRELLQARDFAELDALLARLLQAWLQSRDGEQRYFR--AWMSSTLF---------------DMDSVVDAWQARLAVLKA 68 (277)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHH--HHhhcccc---------------CcchhhhHHHhHHHHHHH
Confidence 456778889999888888877654322 11111111 11110011 00111000 234455555
Q ss_pred HhhccccchHHHHHHHHHHHH----------------------HHHHHHHHHHHHccccCCCCCchhHHHHHHH
Q 011050 130 LLNLQSNSMKSHLLKANALIL----------------------LERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (494)
Q Consensus 130 al~l~p~~~~a~~~~g~~~~~----------------------~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 181 (494)
=++..|++.-+|..+|..+.. ..-.+.|..++.+|+.++|....+...+-.+
T Consensus 69 Wv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~ 142 (277)
T PF13226_consen 69 WVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINI 142 (277)
T ss_pred HHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 667789999999988888755 3345678888999999999877665555444
No 476
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=50.04 E-value=9.3 Score=38.27 Aligned_cols=24 Identities=29% Similarity=0.740 Sum_probs=17.3
Q ss_pred cccHhhHHHhccC-------------CCCCCCCCccc
Q 011050 223 SFCRSCLFQSMDR-------------GNKCPLCRAVL 246 (494)
Q Consensus 223 ~fc~~Cl~~~~~~-------------~~~CP~Cr~~~ 246 (494)
-+|.+|+.+|+.. ...||.||..+
T Consensus 314 mWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~F 350 (358)
T PF10272_consen 314 MWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKF 350 (358)
T ss_pred hHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccc
Confidence 3467899888752 23599999875
No 477
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=50.03 E-value=36 Score=34.50 Aligned_cols=37 Identities=14% Similarity=0.094 Sum_probs=33.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCc
Q 011050 136 NSMKSHLLKANALILLERYDMARDAILSGLQVDPFSN 172 (494)
Q Consensus 136 ~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~ 172 (494)
.++.-+|++|.+-.-.++|..|.+++.+|++..|.+.
T Consensus 245 e~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 245 EWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred HHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 6677888999999999999999999999999999844
No 478
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=49.91 E-value=43 Score=33.89 Aligned_cols=76 Identities=16% Similarity=-0.029 Sum_probs=61.4
Q ss_pred hccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhc--------------c-----
Q 011050 74 NNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNL--------------Q----- 134 (494)
Q Consensus 74 l~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l--------------~----- 134 (494)
++.+|.....+..++.++...|++ ..|.+..++|+-. +
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~-----------------------~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~ 89 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDH-----------------------AQANDLLERALFAFERAFHPSFSPFRSNLTSGN 89 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCH-----------------------HHHHHHHHHHHHHHHHHHHHHhhhhhcccccCc
Confidence 577899999999999999999998 7777777766521 1
Q ss_pred ----------ccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCC-Cc
Q 011050 135 ----------SNSMKSHLLKANALILLERYDMARDAILSGLQVDPF-SN 172 (494)
Q Consensus 135 ----------p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~-~~ 172 (494)
-....++++....+...|-++-|.+..+-.+.+||. |+
T Consensus 90 ~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP 138 (360)
T PF04910_consen 90 CRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDP 138 (360)
T ss_pred cccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc
Confidence 112347888888899999999999999999999998 55
No 479
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=49.74 E-value=9.1 Score=33.71 Aligned_cols=46 Identities=22% Similarity=0.588 Sum_probs=32.2
Q ss_pred ccccccccccccCc-----E--EcCCCCcccHhhHHHhccC------C-----CCCCCCCcccc
Q 011050 202 DFDCTLCLKLLYEP-----I--TTPCGHSFCRSCLFQSMDR------G-----NKCPLCRAVLF 247 (494)
Q Consensus 202 ~~~C~iC~~~~~~P-----v--~~~cgh~fc~~Cl~~~~~~------~-----~~CP~Cr~~~~ 247 (494)
...|-||.-.--+. + ...||..|+.-||..|+.. + ..||.|..++.
T Consensus 165 ~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia 228 (234)
T KOG3268|consen 165 LGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA 228 (234)
T ss_pred hhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence 34677887543222 1 2579999999999999862 1 25999988763
No 480
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=49.65 E-value=81 Score=30.20 Aligned_cols=120 Identities=13% Similarity=-0.002 Sum_probs=79.9
Q ss_pred HHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhc
Q 011050 54 GNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNL 133 (494)
Q Consensus 54 g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l 133 (494)
|.+++...+.-.|+..|...+.-.|.+..++---|.|.-++-.- -+..-+.|.. ..|.+.+++|+-+
T Consensus 2 ~~~L~D~~e~L~~L~~~~~~~~~~~~NL~~l~~~a~~lEk~~~~---Fs~~~s~~~~----------~n~~e~~d~ALm~ 68 (368)
T COG5091 2 YKALYDEKEPLKALHLYDEILKGSPTNLTALIFKAACLEKLYFG---FSDWHSDATM----------ENAKELLDKALMT 68 (368)
T ss_pred ccchhcccchHHHhhhhhhhhccCCcceeEEeehhhhHHHHHhh---hhhhhcccCh----------hhHHHHHHHHHHh
Confidence 34567777888899999999999999998888877775443320 0111122222 6788888888865
Q ss_pred cc------cchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHhhhhh
Q 011050 134 QS------NSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTAS 187 (494)
Q Consensus 134 ~p------~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~ 187 (494)
.. .--..-++++-+|+...+|+-|..+|.+|+.+--++. +.....+++..+..
T Consensus 69 Ae~r~D~~~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~d~-L~~We~rLet~L~~ 127 (368)
T COG5091 69 AEGRGDRSKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYVDDT-LPLWEDRLETKLNK 127 (368)
T ss_pred hhccCCcceeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhhccc-chHHHHHHHHHHhH
Confidence 32 1223457788899999999999999999988744332 22333444444433
No 481
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=49.47 E-value=4.9 Score=23.54 Aligned_cols=10 Identities=40% Similarity=0.843 Sum_probs=5.6
Q ss_pred CCCCCCCCcc
Q 011050 236 GNKCPLCRAV 245 (494)
Q Consensus 236 ~~~CP~Cr~~ 245 (494)
...||.|..+
T Consensus 16 ~~fC~~CG~~ 25 (26)
T PF13248_consen 16 AKFCPNCGAK 25 (26)
T ss_pred cccChhhCCC
Confidence 3456666654
No 482
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=49.33 E-value=16 Score=35.32 Aligned_cols=48 Identities=10% Similarity=-0.132 Sum_probs=36.9
Q ss_pred CCCCcccccccccccccCcEEcCCCCc-ccHhhHHHhccCCCCCCCCCccc
Q 011050 197 PERTDDFDCTLCLKLLYEPITTPCGHS-FCRSCLFQSMDRGNKCPLCRAVL 246 (494)
Q Consensus 197 ~~~~~~~~C~iC~~~~~~Pv~~~cgh~-fc~~Cl~~~~~~~~~CP~Cr~~~ 246 (494)
......+.|..|..-+-.-+..+|||+ ||..|.. ......||.|....
T Consensus 338 ~~~~s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~--~s~~~~~~~c~~~~ 386 (394)
T KOG2113|consen 338 NGLMSSLKGTSAGFGLLSTIWSGGNMNLSPGSLAS--ASASPTSSTCDHND 386 (394)
T ss_pred ccchhhcccccccCceeeeEeecCCcccChhhhhh--cccCCccccccccc
Confidence 344567789999988888888999997 6888866 34566899998754
No 483
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=49.07 E-value=49 Score=30.37 Aligned_cols=70 Identities=14% Similarity=0.128 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcc-CCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhccccc----h
Q 011050 64 EEAISNYSRANNI-KPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNS----M 138 (494)
Q Consensus 64 ~~Ai~~y~~al~~-~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~----~ 138 (494)
+.|...|-++-.. .-+++.+.+.+|..|.+... ++++..+.+++++.+.. +
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~------------------------~Kt~~ll~~~L~l~~~~~~~n~ 178 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYTKRDP------------------------EKTIQLLLRALELSNPDDNFNP 178 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCH------------------------HHHHHHHHHHHHhcCCCCCCCH
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 011050 139 KSHLLKANALILLERYDMA 157 (494)
Q Consensus 139 ~a~~~~g~~~~~~~~~~~A 157 (494)
+.+..+|.+|..+|+++.|
T Consensus 179 eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 179 EILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHHHhcchhhh
No 484
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=48.93 E-value=26 Score=36.73 Aligned_cols=65 Identities=12% Similarity=0.026 Sum_probs=54.0
Q ss_pred HHHHHHHHHHh---cChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHH
Q 011050 50 LVQKGNRAFRE---SNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (494)
Q Consensus 50 ~~~~g~~~~~~---~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (494)
+-.++..++++ |+--.|+.....|++++|....+++.++.++..++++ .+|+..
T Consensus 411 l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~-----------------------~eal~~ 467 (758)
T KOG1310|consen 411 LENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRY-----------------------LEALSC 467 (758)
T ss_pred HHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhH-----------------------HHhhhh
Confidence 34556666655 5556788999999999999999999999999999999 999988
Q ss_pred HHHHhhccccc
Q 011050 127 AEKLLNLQSNS 137 (494)
Q Consensus 127 ~~~al~l~p~~ 137 (494)
...+....|.+
T Consensus 468 ~~alq~~~Ptd 478 (758)
T KOG1310|consen 468 HWALQMSFPTD 478 (758)
T ss_pred HHHHhhcCchh
Confidence 88887777854
No 485
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=48.06 E-value=8.7 Score=28.00 Aligned_cols=12 Identities=42% Similarity=0.968 Sum_probs=8.6
Q ss_pred cccHhhHHHhcc
Q 011050 223 SFCRSCLFQSMD 234 (494)
Q Consensus 223 ~fc~~Cl~~~~~ 234 (494)
-||+.||.+|..
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999975
No 486
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.87 E-value=37 Score=28.91 Aligned_cols=49 Identities=16% Similarity=0.078 Sum_probs=37.8
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCccc
Q 011050 35 GEGSLPWDRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIV 83 (494)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~ 83 (494)
+..+...+..+.-..-.+.|..++.+|+++++..++..||.+.|.-..+
T Consensus 69 pd~~d~~~~E~~Fmqqv~lGE~L~~qg~~e~ga~h~~nAi~vcgqpaqL 117 (143)
T KOG4056|consen 69 PDPSDAEEVEKFFMQQVQLGEELLAQGNEEEGAEHLANAIVVCGQPAQL 117 (143)
T ss_pred CCCCCHHHHHHHHHHHHHhHHHHHHccCHHHHHHHHHHHHhhcCCHHHH
Confidence 3344445555555677889999999999999999999999988765443
No 487
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=47.72 E-value=15 Score=34.63 Aligned_cols=45 Identities=20% Similarity=0.402 Sum_probs=36.7
Q ss_pred cccccccccccccCcEE-cCCCCcccHhhHHHhccC--CCCCCCCCcc
Q 011050 201 DDFDCTLCLKLLYEPIT-TPCGHSFCRSCLFQSMDR--GNKCPLCRAV 245 (494)
Q Consensus 201 ~~~~C~iC~~~~~~Pv~-~~cgh~fc~~Cl~~~~~~--~~~CP~Cr~~ 245 (494)
-.+.||+.+..+.+|+. ..|||.|-++-+...+.. +-.||+=+++
T Consensus 175 fs~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~ 222 (262)
T KOG2979|consen 175 FSNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCE 222 (262)
T ss_pred hcccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence 45689999999999975 699999999999987765 4569985554
No 488
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=47.18 E-value=31 Score=28.11 Aligned_cols=44 Identities=14% Similarity=0.153 Sum_probs=34.8
Q ss_pred hhHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCccccc
Q 011050 42 DRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLG 85 (494)
Q Consensus 42 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~ 85 (494)
-..+++.....+|...+-.|||+.|.....++-+..+.....|.
T Consensus 54 rr~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L 97 (108)
T PF07219_consen 54 RRRRKAQRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYL 97 (108)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHH
Confidence 35567788899999999999999999999999777554444433
No 489
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=46.99 E-value=12 Score=26.25 Aligned_cols=37 Identities=27% Similarity=0.600 Sum_probs=23.9
Q ss_pred ccccccccccccCcEEcCCCCcccHhhHHHhccC--CCCCCCCCcc
Q 011050 202 DFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDR--GNKCPLCRAV 245 (494)
Q Consensus 202 ~~~C~iC~~~~~~Pv~~~cgh~fc~~Cl~~~~~~--~~~CP~Cr~~ 245 (494)
.|.||+|.+.+.. ..++..|...+... ...||+|...
T Consensus 2 ~f~CP~C~~~~~~-------~~L~~H~~~~H~~~~~~v~CPiC~~~ 40 (54)
T PF05605_consen 2 SFTCPYCGKGFSE-------SSLVEHCEDEHRSESKNVVCPICSSR 40 (54)
T ss_pred CcCCCCCCCccCH-------HHHHHHHHhHCcCCCCCccCCCchhh
Confidence 5789999974332 24566666665543 3469999763
No 490
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=46.90 E-value=22 Score=41.20 Aligned_cols=122 Identities=13% Similarity=0.047 Sum_probs=86.3
Q ss_pred CceeeccCCCccceeccCCCCCchhhHHHHHHHHHHHHHHHHhcChHHHHH------HHHHHh-ccCCCCcccccChhHH
Q 011050 18 FPLVGIDDVDDYIWANEGEGSLPWDRYTHVFDLVQKGNRAFRESNFEEAIS------NYSRAN-NIKPGDPIVLGNRSSA 90 (494)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~------~y~~al-~~~p~~~~~~~~~a~~ 90 (494)
..+...+.+..++.+...... ...++...+.|.....+|.+..|.. .+.+.. .+.|.....|..+|..
T Consensus 908 s~f~~~Di~~~~p~ik~s~P~-----~~~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l 982 (1236)
T KOG1839|consen 908 SEFNDSDILNLRPVIKHSSPT-----VSEAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKL 982 (1236)
T ss_pred CCCCcccccccccccccCCCc-----cchhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHH
Confidence 444444555555555555552 2236778888888888888887766 555333 4477888889999999
Q ss_pred HHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhc-------c-ccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 011050 91 YIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNL-------Q-SNSMKSHLLKANALILLERYDMARDAIL 162 (494)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l-------~-p~~~~a~~~~g~~~~~~~~~~~A~~~~~ 162 (494)
+..++++ ++|+....+|.-+ | |+-..+|-.++...+..++...|+..+.
T Consensus 983 ~~~~~d~-----------------------~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ 1039 (1236)
T KOG1839|consen 983 SNRLGDN-----------------------QEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLN 1039 (1236)
T ss_pred Hhhhcch-----------------------HHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHH
Confidence 9999999 8898888887644 3 4556677777777777777778887777
Q ss_pred ccccC
Q 011050 163 SGLQV 167 (494)
Q Consensus 163 ~al~l 167 (494)
+++.+
T Consensus 1040 ra~~l 1044 (1236)
T KOG1839|consen 1040 RALKL 1044 (1236)
T ss_pred HHHHh
Confidence 77654
No 491
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=46.90 E-value=25 Score=38.49 Aligned_cols=66 Identities=24% Similarity=0.606 Sum_probs=45.5
Q ss_pred cccccccccc--cccCcEEcCCCCc-----ccHhhHHHhccCC--CCCCCCCccccc-------CCCCCcccccHHHHHH
Q 011050 201 DDFDCTLCLK--LLYEPITTPCGHS-----FCRSCLFQSMDRG--NKCPLCRAVLFI-------TPRTCAVSVTLNSIIQ 264 (494)
Q Consensus 201 ~~~~C~iC~~--~~~~Pv~~~cgh~-----fc~~Cl~~~~~~~--~~CP~Cr~~~~~-------~~~~~~~~~~l~~~~~ 264 (494)
++..|.+|.. .-.+|..-||..+ .++.|+.+|...+ .+|-.|..+... .|+..+.+..+..+..
T Consensus 11 d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~IY~e~mP~~IPfsiL~rk~a~ 90 (1175)
T COG5183 11 DKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKDIYKEDMPQIIPFSILIRKVAD 90 (1175)
T ss_pred cchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeeeecccCCCcccceehhHHHHHH
Confidence 4578999984 5677776677654 6889999999854 469999987622 2455555555555554
Q ss_pred Hh
Q 011050 265 KN 266 (494)
Q Consensus 265 ~~ 266 (494)
..
T Consensus 91 t~ 92 (1175)
T COG5183 91 TG 92 (1175)
T ss_pred HH
Confidence 33
No 492
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=46.44 E-value=46 Score=27.84 Aligned_cols=34 Identities=24% Similarity=0.435 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCc
Q 011050 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP 81 (494)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~ 81 (494)
......|..+..+|++++|+.+|.+|+...|+-.
T Consensus 64 l~qV~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~ 97 (121)
T PF02064_consen 64 LQQVQLGEQLLAQGDYEEAAEHFYNALKVCPQPA 97 (121)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHTSSSHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHH
Confidence 4556799999999999999999999999987643
No 493
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=46.28 E-value=6.6 Score=26.03 Aligned_cols=26 Identities=31% Similarity=0.621 Sum_probs=16.8
Q ss_pred cCCCCcccHhhHHHhccCCCCCCCCCc
Q 011050 218 TPCGHSFCRSCLFQSMDRGNKCPLCRA 244 (494)
Q Consensus 218 ~~cgh~fc~~Cl~~~~~~~~~CP~Cr~ 244 (494)
..|||.|....-... .....||.|+.
T Consensus 9 ~~Cg~~fe~~~~~~~-~~~~~CP~Cg~ 34 (42)
T PF09723_consen 9 EECGHEFEVLQSISE-DDPVPCPECGS 34 (42)
T ss_pred CCCCCEEEEEEEcCC-CCCCcCCCCCC
Confidence 478888866543222 23457999988
No 494
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=46.20 E-value=94 Score=25.56 Aligned_cols=64 Identities=16% Similarity=0.156 Sum_probs=50.3
Q ss_pred hhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhccccch---HHHHHHHHHHHHHH-----------
Q 011050 87 RSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSM---KSHLLKANALILLE----------- 152 (494)
Q Consensus 87 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~---~a~~~~g~~~~~~~----------- 152 (494)
+|.-++..|++ -+|++..+..+...++.. -.|..-|.++..+.
T Consensus 2 ~A~~~~~rGnh-----------------------iKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~ 58 (111)
T PF04781_consen 2 KAKDYFARGNH-----------------------IKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFR 58 (111)
T ss_pred hHHHHHHccCH-----------------------HHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHH
Confidence 56778899999 899999999999887665 45666687775532
Q ss_pred HHHHHHHHHHccccCCCCCch
Q 011050 153 RYDMARDAILSGLQVDPFSNP 173 (494)
Q Consensus 153 ~~~~A~~~~~~al~l~p~~~~ 173 (494)
...-|++.|.++..+.|+.+.
T Consensus 59 yLl~sve~~s~a~~Lsp~~A~ 79 (111)
T PF04781_consen 59 YLLGSVECFSRAVELSPDSAH 79 (111)
T ss_pred HHHHhHHHHHHHhccChhHHH
Confidence 344689999999999998743
No 495
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=45.90 E-value=77 Score=33.06 Aligned_cols=42 Identities=24% Similarity=0.268 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhh
Q 011050 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQF 97 (494)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~ 97 (494)
..|...|..++.+|+++-|..+|.++=. +..+...|...|+-
T Consensus 348 ~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~ 389 (443)
T PF04053_consen 348 EKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDR 389 (443)
T ss_dssp HHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-H
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCH
Confidence 4777888888888888888888877654 33444555555554
No 496
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=45.69 E-value=68 Score=30.98 Aligned_cols=103 Identities=16% Similarity=0.057 Sum_probs=67.7
Q ss_pred HHHHHHHHHHH----hcChHHHHHHHHHHhccCCCCc-ccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHH
Q 011050 49 DLVQKGNRAFR----ESNFEEAISNYSRANNIKPGDP-IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 123 (494)
Q Consensus 49 ~~~~~g~~~~~----~~~~~~Ai~~y~~al~~~p~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 123 (494)
.....|..++. ..|+.+|..+|.+|.+..-... .+..+++.+|..-. . . .....+-..|
T Consensus 111 a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~-~-------~--------~~~~~~~~~A 174 (292)
T COG0790 111 ALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGL-Q-------A--------LAVAYDDKKA 174 (292)
T ss_pred HHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCh-h-------h--------hcccHHHHhH
Confidence 44455666655 4589999999999998753332 22444444443321 0 0 0011111578
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHH----HHHHHHHHHHHHccccCCC
Q 011050 124 LKDAEKLLNLQSNSMKSHLLKANALIL----LERYDMARDAILSGLQVDP 169 (494)
Q Consensus 124 ~~~~~~al~l~p~~~~a~~~~g~~~~~----~~~~~~A~~~~~~al~l~p 169 (494)
+..+.++-... ++.+.+.+|..|.. ..++++|..+|.++-+...
T Consensus 175 ~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 175 LYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred HHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence 88888888776 88899999988854 4588999999999987665
No 497
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=45.65 E-value=50 Score=33.39 Aligned_cols=34 Identities=18% Similarity=0.214 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHhccCCC-Cc
Q 011050 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPG-DP 81 (494)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~-~~ 81 (494)
..++.....+.++|-+..|.+...-.+.+||. |+
T Consensus 104 lal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP 138 (360)
T PF04910_consen 104 LALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDP 138 (360)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc
Confidence 45667777788999999999999999999999 66
No 498
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=45.06 E-value=60 Score=36.08 Aligned_cols=25 Identities=12% Similarity=-0.100 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcc
Q 011050 140 SHLLKANALILLERYDMARDAILSG 164 (494)
Q Consensus 140 a~~~~g~~~~~~~~~~~A~~~~~~a 164 (494)
.||+.|.-+...++.+.|+++|+++
T Consensus 860 Tyy~yA~~Lear~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 860 TYYNYAKYLEARRDIEAALEYYEKA 884 (1416)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHhc
Confidence 6889999999999999999999987
No 499
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=44.87 E-value=55 Score=24.56 Aligned_cols=45 Identities=24% Similarity=0.222 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCc
Q 011050 120 AELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSN 172 (494)
Q Consensus 120 ~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~ 172 (494)
..+|+....+|++.|-. |.--....-|.+|++.|..+++..|+..
T Consensus 5 ~~~A~~li~~Av~~d~~--------g~~~eAl~~Y~~a~e~l~~~~~~~~~~~ 49 (77)
T smart00745 5 LSKAKELISKALKADEA--------GDYEEALELYKKAIEYLLEGIKVESDSK 49 (77)
T ss_pred HHHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHHHHhccCCCHH
Confidence 37888888888887752 1112244567788888888888887643
No 500
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=44.60 E-value=36 Score=33.05 Aligned_cols=44 Identities=16% Similarity=0.118 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 011050 121 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSG 164 (494)
Q Consensus 121 ~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~a 164 (494)
.+|...+..+++.+|++..+...++.+|...|+.+.|...+...
T Consensus 151 ~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 151 GEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred hhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 88999999999999999999999999999999999998877653
Done!