Query 011050
Match_columns 494
No_of_seqs 381 out of 3925
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 19:46:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011050.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011050hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m65_A ATP-dependent protease 100.0 4.8E-33 1.6E-37 258.3 19.5 193 288-494 8-208 (209)
2 3ljc_A ATP-dependent protease 100.0 7.8E-32 2.7E-36 257.1 14.7 192 288-493 17-216 (252)
3 1zbo_A Hypothetical protein BP 100.0 1.4E-31 4.9E-36 248.6 15.6 190 288-490 3-202 (210)
4 2c2l_A CHIP, carboxy terminus 100.0 1E-28 3.4E-33 240.3 9.9 198 46-268 3-273 (281)
5 2ane_A ATP-dependent protease 99.8 2.1E-20 7.1E-25 157.6 11.2 101 288-388 17-125 (125)
6 4gco_A Protein STI-1; structur 99.8 3.7E-19 1.3E-23 151.1 8.9 115 44-181 10-124 (126)
7 2hr2_A Hypothetical protein; a 99.7 4.1E-18 1.4E-22 148.7 6.1 124 44-190 8-154 (159)
8 3rkv_A Putative peptidylprolyl 99.7 3.2E-17 1.1E-21 144.8 7.6 127 41-190 5-150 (162)
9 4gcn_A Protein STI-1; structur 99.7 1.8E-16 6.2E-21 134.5 8.4 115 43-181 4-125 (127)
10 3upv_A Heat shock protein STI1 99.6 3E-16 1E-20 132.1 7.8 118 45-185 2-125 (126)
11 3sz7_A HSC70 cochaperone (SGT) 99.6 2.2E-15 7.6E-20 133.1 10.4 126 42-190 6-133 (164)
12 3gyz_A Chaperone protein IPGC; 99.6 1.4E-15 4.9E-20 133.1 8.5 107 43-172 32-138 (151)
13 2vgx_A Chaperone SYCD; alterna 99.6 4.1E-15 1.4E-19 129.6 9.5 124 44-190 18-141 (148)
14 2xcb_A PCRH, regulatory protei 99.6 5.2E-15 1.8E-19 127.6 8.5 124 44-190 15-138 (142)
15 2fbn_A 70 kDa peptidylprolyl i 99.6 1.3E-14 4.5E-19 132.3 11.2 146 22-190 13-174 (198)
16 4ga2_A E3 SUMO-protein ligase 99.5 6.2E-15 2.1E-19 128.7 6.6 115 45-182 29-144 (150)
17 2kr4_A Ubiquitin conjugation f 99.5 1.1E-14 3.6E-19 113.9 5.1 74 197-272 9-82 (85)
18 1hxi_A PEX5, peroxisome target 99.5 4.6E-14 1.6E-18 118.5 8.6 103 48-173 18-120 (121)
19 1kt0_A FKBP51, 51 kDa FK506-bi 99.5 6E-14 2.1E-18 145.4 9.9 126 41-189 262-402 (457)
20 2kre_A Ubiquitin conjugation f 99.5 1.4E-14 4.8E-19 116.6 3.9 71 197-269 24-94 (100)
21 3fl2_A E3 ubiquitin-protein li 99.5 2.3E-14 8E-19 120.9 4.6 72 201-273 51-123 (124)
22 3q49_B STIP1 homology and U bo 99.5 7.1E-14 2.4E-18 118.7 7.6 119 46-187 8-131 (137)
23 1zu2_A Mitochondrial import re 99.5 7.9E-14 2.7E-18 121.3 7.8 117 58-187 13-140 (158)
24 1t1h_A Gspef-atpub14, armadill 99.5 4.9E-14 1.7E-18 108.6 5.8 70 197-268 3-73 (78)
25 1p5q_A FKBP52, FK506-binding p 99.5 1E-13 3.6E-18 137.7 9.5 124 41-187 141-279 (336)
26 1elw_A TPR1-domain of HOP; HOP 99.5 2.6E-13 8.8E-18 111.1 10.2 115 46-183 3-117 (118)
27 1ihg_A Cyclophilin 40; ppiase 99.5 1.1E-13 3.9E-18 139.3 9.4 127 41-190 217-359 (370)
28 1wgm_A Ubiquitin conjugation f 99.4 1.1E-13 3.8E-18 111.0 6.4 71 197-269 17-88 (98)
29 2lni_A Stress-induced-phosphop 99.4 2.2E-13 7.6E-18 114.3 8.3 119 42-183 11-129 (133)
30 3urz_A Uncharacterized protein 99.4 1.5E-13 5.2E-18 126.6 7.3 112 47-181 4-131 (208)
31 2dba_A Smooth muscle cell asso 99.4 3.8E-13 1.3E-17 115.3 8.8 116 45-183 26-144 (148)
32 2pl2_A Hypothetical conserved 99.4 5.2E-13 1.8E-17 123.8 10.0 117 46-185 4-131 (217)
33 3l11_A E3 ubiquitin-protein li 99.4 9.9E-14 3.4E-18 115.4 4.1 81 198-278 11-97 (115)
34 2if4_A ATFKBP42; FKBP-like, al 99.4 1.7E-13 5.7E-18 136.4 5.6 122 41-185 173-311 (338)
35 4gyw_A UDP-N-acetylglucosamine 99.4 4.4E-13 1.5E-17 146.1 9.3 113 44-179 6-118 (723)
36 1z6u_A NP95-like ring finger p 99.4 1.5E-13 5.2E-18 119.4 4.5 73 201-274 77-150 (150)
37 4ga2_A E3 SUMO-protein ligase 99.4 1.2E-13 3.9E-18 120.6 3.2 108 53-183 3-110 (150)
38 2xev_A YBGF; tetratricopeptide 99.4 1E-12 3.4E-17 110.2 8.9 114 49-185 4-123 (129)
39 2vyi_A SGTA protein; chaperone 99.4 1.9E-12 6.4E-17 107.8 10.2 121 42-185 7-127 (131)
40 3ztg_A E3 ubiquitin-protein li 99.4 4.4E-13 1.5E-17 106.7 5.9 72 196-268 7-81 (92)
41 1a17_A Serine/threonine protei 99.4 1.9E-12 6.7E-17 113.0 10.5 118 40-180 6-123 (166)
42 1elr_A TPR2A-domain of HOP; HO 99.4 1.9E-12 6.4E-17 108.0 9.3 119 46-188 3-128 (131)
43 2ckl_A Polycomb group ring fin 99.4 5E-13 1.7E-17 109.8 5.3 74 200-273 13-89 (108)
44 4ayc_A E3 ubiquitin-protein li 99.3 2.1E-13 7.1E-18 117.2 2.6 74 201-275 52-125 (138)
45 2f42_A STIP1 homology and U-bo 99.3 9.3E-13 3.2E-17 116.5 6.3 69 197-267 101-170 (179)
46 3urz_A Uncharacterized protein 99.3 7.8E-12 2.7E-16 115.0 12.5 105 53-181 60-199 (208)
47 2h6f_A Protein farnesyltransfe 99.3 1E-12 3.5E-17 132.8 7.0 115 44-181 94-209 (382)
48 4gyw_A UDP-N-acetylglucosamine 99.3 1.5E-12 5.2E-17 141.8 8.5 113 46-181 42-154 (723)
49 2h6f_A Protein farnesyltransfe 99.3 2E-12 6.8E-17 130.6 8.4 116 46-184 130-246 (382)
50 2pl2_A Hypothetical conserved 99.3 6.4E-12 2.2E-16 116.4 9.5 112 46-181 38-160 (217)
51 4i17_A Hypothetical protein; T 99.3 6.2E-12 2.1E-16 116.7 9.4 105 47-174 7-112 (228)
52 4i17_A Hypothetical protein; T 99.3 7.5E-12 2.6E-16 116.1 9.1 117 46-185 75-227 (228)
53 2y43_A E3 ubiquitin-protein li 99.3 1.9E-12 6.5E-17 104.5 4.2 64 201-266 21-85 (99)
54 2egp_A Tripartite motif-contai 99.3 7.7E-13 2.6E-17 102.1 1.5 64 197-262 7-77 (79)
55 3k9i_A BH0479 protein; putativ 99.3 9.7E-13 3.3E-17 109.2 2.0 98 59-179 2-102 (117)
56 3vtx_A MAMA; tetratricopeptide 99.3 1.1E-11 3.7E-16 110.9 9.0 113 46-181 4-116 (184)
57 3vtx_A MAMA; tetratricopeptide 99.3 3.1E-12 1E-16 114.5 5.0 99 50-171 76-174 (184)
58 1na0_A Designed protein CTPR3; 99.3 1.9E-11 6.6E-16 100.6 9.5 113 47-182 9-121 (125)
59 3lrq_A E3 ubiquitin-protein li 99.2 2.5E-12 8.6E-17 103.9 3.6 63 201-265 21-85 (100)
60 2yu4_A E3 SUMO-protein ligase 99.2 2.2E-12 7.5E-17 102.9 3.0 66 200-267 5-80 (94)
61 2csy_A Zinc finger protein 183 99.2 4.4E-12 1.5E-16 98.3 4.4 60 197-259 10-69 (81)
62 2kck_A TPR repeat; tetratricop 99.2 7.7E-12 2.6E-16 101.2 5.5 102 48-172 7-111 (112)
63 1wao_1 Serine/threonine protei 99.2 3.5E-12 1.2E-16 132.8 4.2 115 45-182 4-118 (477)
64 2l6j_A TPR repeat-containing p 99.2 7.8E-12 2.7E-16 101.6 4.4 96 46-164 3-104 (111)
65 2ecw_A Tripartite motif-contai 99.2 3.6E-12 1.2E-16 99.7 2.2 64 197-262 14-83 (85)
66 2e2e_A Formate-dependent nitri 99.2 3.6E-11 1.2E-15 107.0 8.6 118 46-184 43-161 (177)
67 2ckl_B Ubiquitin ligase protei 99.2 8.4E-12 2.9E-16 110.6 3.7 71 199-270 51-123 (165)
68 2ecv_A Tripartite motif-contai 99.2 5.4E-12 1.9E-16 98.7 1.8 64 197-262 14-83 (85)
69 2yur_A Retinoblastoma-binding 99.2 2.3E-11 7.7E-16 92.4 5.2 52 196-247 9-63 (74)
70 1jm7_B BARD1, BRCA1-associated 99.2 1.2E-11 4.3E-16 102.9 4.0 62 201-266 21-83 (117)
71 2pzi_A Probable serine/threoni 99.2 2.9E-11 9.8E-16 131.6 7.2 113 44-180 430-542 (681)
72 1hh8_A P67PHOX, NCF-2, neutrop 99.2 8.5E-11 2.9E-15 107.4 9.3 104 47-173 37-156 (213)
73 2djb_A Polycomb group ring fin 99.1 2.5E-11 8.6E-16 91.7 4.7 52 196-247 9-61 (72)
74 2d8t_A Dactylidin, ring finger 99.1 2.9E-11 9.9E-16 91.1 4.8 51 197-247 10-60 (71)
75 3qky_A Outer membrane assembly 99.1 1.4E-10 4.8E-15 110.0 10.7 113 46-181 14-140 (261)
76 3gyz_A Chaperone protein IPGC; 99.1 7.5E-12 2.6E-16 109.3 1.6 97 66-185 21-117 (151)
77 1jm7_A BRCA1, breast cancer ty 99.1 1.8E-11 6E-16 101.2 3.7 66 201-268 20-88 (112)
78 3uq3_A Heat shock protein STI1 99.1 6.8E-11 2.3E-15 110.7 7.7 113 45-180 137-255 (258)
79 2ecy_A TNF receptor-associated 99.1 3.9E-11 1.3E-15 88.9 4.4 51 197-247 10-61 (66)
80 2yhc_A BAMD, UPF0169 lipoprote 99.1 2.5E-10 8.6E-15 106.0 10.9 114 47-183 4-141 (225)
81 2ysl_A Tripartite motif-contai 99.1 6.2E-11 2.1E-15 89.7 5.5 51 197-247 15-68 (73)
82 3ieg_A DNAJ homolog subfamily 99.1 2.4E-10 8.2E-15 112.1 10.7 118 49-189 236-357 (359)
83 1hh8_A P67PHOX, NCF-2, neutrop 99.1 2.3E-10 7.8E-15 104.5 9.7 102 45-172 4-105 (213)
84 4abn_A Tetratricopeptide repea 99.1 1.4E-10 4.9E-15 120.6 9.0 118 48-188 171-308 (474)
85 1xnf_A Lipoprotein NLPI; TPR, 99.1 2E-10 6.9E-15 108.7 9.3 109 44-175 40-148 (275)
86 2r5s_A Uncharacterized protein 99.1 4.1E-11 1.4E-15 106.8 4.1 132 48-184 7-156 (176)
87 3hct_A TNF receptor-associated 99.1 3.9E-11 1.3E-15 100.0 3.6 67 197-265 13-80 (118)
88 2vsy_A XCC0866; transferase, g 99.1 1.7E-10 5.8E-15 122.5 9.5 118 45-185 21-138 (568)
89 2pzi_A Probable serine/threoni 99.1 5.5E-11 1.9E-15 129.3 5.1 111 47-181 467-577 (681)
90 3qou_A Protein YBBN; thioredox 99.1 9.9E-11 3.4E-15 113.3 6.3 136 46-185 116-268 (287)
91 2ysj_A Tripartite motif-contai 99.1 1.2E-10 4.2E-15 85.3 5.0 46 197-242 15-63 (63)
92 2kc7_A BFR218_protein; tetratr 99.1 2.1E-10 7.2E-15 91.5 6.4 93 50-173 3-96 (99)
93 2fo7_A Synthetic consensus TPR 99.1 4.6E-10 1.6E-14 93.3 8.8 110 48-180 2-111 (136)
94 3ieg_A DNAJ homolog subfamily 99.0 4.4E-10 1.5E-14 110.3 10.0 112 46-180 2-116 (359)
95 4gco_A Protein STI-1; structur 99.0 7.6E-11 2.6E-15 99.4 3.7 92 71-185 3-94 (126)
96 3qky_A Outer membrane assembly 99.0 5.9E-10 2E-14 105.7 10.2 116 47-185 89-242 (261)
97 2kat_A Uncharacterized protein 99.0 1.4E-10 5E-15 95.3 5.1 86 64-172 2-87 (115)
98 2gw1_A Mitochondrial precursor 99.0 4.8E-10 1.7E-14 116.1 10.0 107 44-174 3-109 (514)
99 2ct2_A Tripartite motif protei 99.0 1E-10 3.5E-15 92.0 3.6 52 196-247 9-67 (88)
100 3ng2_A RNF4, snurf, ring finge 99.0 9.8E-11 3.4E-15 88.1 3.3 49 199-247 7-62 (71)
101 3fp2_A TPR repeat-containing p 99.0 2.3E-10 7.7E-15 119.6 7.1 111 40-174 18-128 (537)
102 4abn_A Tetratricopeptide repea 99.0 4.2E-10 1.4E-14 117.0 8.8 114 48-185 138-271 (474)
103 1bor_A Transcription factor PM 99.0 1E-10 3.4E-15 83.5 2.8 47 199-248 3-49 (56)
104 3as5_A MAMA; tetratricopeptide 99.0 9.7E-10 3.3E-14 96.9 9.8 111 47-180 42-152 (186)
105 3as5_A MAMA; tetratricopeptide 99.0 6.7E-10 2.3E-14 98.0 8.6 113 46-181 7-119 (186)
106 3u4t_A TPR repeat-containing p 99.0 4.9E-10 1.7E-14 106.1 8.2 114 48-185 4-121 (272)
107 1rmd_A RAG1; V(D)J recombinati 99.0 1.5E-10 5E-15 96.2 3.8 48 200-247 21-69 (116)
108 3htk_C E3 SUMO-protein ligase 99.0 1.4E-10 4.7E-15 107.4 3.9 67 198-266 177-248 (267)
109 2q7f_A YRRB protein; TPR, prot 99.0 4.8E-10 1.7E-14 104.0 7.7 113 46-181 90-202 (243)
110 2ea6_A Ring finger protein 4; 99.0 1.4E-10 4.8E-15 86.6 3.0 50 197-246 10-66 (69)
111 4eqf_A PEX5-related protein; a 99.0 5.1E-10 1.7E-14 111.2 7.8 102 47-171 213-314 (365)
112 2ecj_A Tripartite motif-contai 99.0 3.3E-10 1.1E-14 81.5 4.6 46 197-242 10-58 (58)
113 2vgx_A Chaperone SYCD; alterna 99.0 1.1E-10 3.7E-15 101.4 2.3 95 67-184 7-101 (148)
114 1fch_A Peroxisomal targeting s 99.0 8.4E-10 2.9E-14 109.3 8.6 116 47-185 217-343 (368)
115 3u4t_A TPR repeat-containing p 99.0 2.3E-09 7.8E-14 101.4 11.3 108 48-179 38-149 (272)
116 1g25_A CDK-activating kinase a 99.0 2.7E-10 9.2E-15 84.1 3.6 47 201-247 2-54 (65)
117 1iym_A EL5; ring-H2 finger, ub 99.0 4.3E-10 1.5E-14 79.9 4.4 47 200-246 3-53 (55)
118 2y4t_A DNAJ homolog subfamily 99.0 1.1E-09 3.7E-14 111.8 9.2 113 43-178 22-137 (450)
119 1w3b_A UDP-N-acetylglucosamine 99.0 9.9E-10 3.4E-14 110.1 8.7 113 46-181 236-348 (388)
120 3knv_A TNF receptor-associated 99.0 1.2E-10 4.1E-15 99.9 1.5 50 198-247 27-77 (141)
121 3hym_B Cell division cycle pro 99.0 1.6E-09 5.6E-14 105.1 9.8 112 47-181 193-313 (330)
122 3uq3_A Heat shock protein STI1 99.0 1E-09 3.5E-14 102.5 8.0 114 47-183 79-218 (258)
123 4eqf_A PEX5-related protein; a 99.0 2.4E-10 8.2E-15 113.6 3.7 108 45-175 63-170 (365)
124 2xeu_A Ring finger protein 4; 98.9 1.7E-10 5.9E-15 84.7 2.0 47 201-247 2-55 (64)
125 1w3b_A UDP-N-acetylglucosamine 98.9 2E-09 6.7E-14 108.0 10.2 114 46-182 202-315 (388)
126 2ect_A Ring finger protein 126 98.9 6.9E-10 2.4E-14 85.1 5.3 51 197-247 10-63 (78)
127 2kiz_A E3 ubiquitin-protein li 98.9 5.3E-10 1.8E-14 83.5 4.4 50 198-247 10-62 (69)
128 2yhc_A BAMD, UPF0169 lipoprote 98.9 3.1E-09 1E-13 98.6 10.5 122 47-177 41-186 (225)
129 2fo7_A Synthetic consensus TPR 98.9 1.1E-09 3.8E-14 90.9 6.7 102 47-171 35-136 (136)
130 2q7f_A YRRB protein; TPR, prot 98.9 1.9E-09 6.4E-14 100.0 9.0 112 46-180 56-167 (243)
131 2y4t_A DNAJ homolog subfamily 98.9 2.1E-09 7.1E-14 109.6 10.0 116 50-188 260-379 (450)
132 2ecm_A Ring finger and CHY zin 98.9 3.9E-10 1.3E-14 80.1 3.0 46 201-246 4-53 (55)
133 1chc_A Equine herpes virus-1 r 98.9 3.3E-10 1.1E-14 84.4 2.7 47 201-247 4-51 (68)
134 2vq2_A PILW, putative fimbrial 98.9 2.1E-09 7.2E-14 98.1 8.7 111 45-178 6-119 (225)
135 1na3_A Designed protein CTPR2; 98.9 2.4E-09 8.1E-14 83.3 7.7 85 45-152 7-91 (91)
136 2ho1_A Type 4 fimbrial biogene 98.9 1.9E-09 6.6E-14 100.8 8.5 113 45-180 35-149 (252)
137 3hym_B Cell division cycle pro 98.9 3.6E-09 1.2E-13 102.6 10.5 111 47-180 90-201 (330)
138 1fch_A Peroxisomal targeting s 98.9 2E-09 6.7E-14 106.6 8.6 107 47-176 64-170 (368)
139 2ecn_A Ring finger protein 141 98.9 5.8E-10 2E-14 83.6 3.5 49 198-247 11-59 (70)
140 2e2e_A Formate-dependent nitri 98.9 1.8E-10 6E-15 102.4 0.7 108 53-183 16-126 (177)
141 2l0b_A E3 ubiquitin-protein li 98.9 8.5E-10 2.9E-14 87.2 4.3 49 199-247 37-88 (91)
142 2ep4_A Ring finger protein 24; 98.9 1.1E-09 3.8E-14 83.0 4.5 52 196-247 9-63 (74)
143 2ho1_A Type 4 fimbrial biogene 98.9 4.3E-09 1.5E-13 98.4 9.6 112 46-180 70-183 (252)
144 1e4u_A Transcriptional repress 98.9 1.4E-09 4.7E-14 83.0 4.9 49 199-247 8-61 (78)
145 3hcs_A TNF receptor-associated 98.9 6.5E-10 2.2E-14 98.9 3.6 67 197-265 13-80 (170)
146 1x4j_A Ring finger protein 38; 98.9 8.5E-10 2.9E-14 83.9 3.6 49 199-247 20-71 (75)
147 1p5q_A FKBP52, FK506-binding p 98.9 3.9E-09 1.3E-13 104.6 8.9 97 47-166 196-293 (336)
148 2vq2_A PILW, putative fimbrial 98.9 3.8E-09 1.3E-13 96.3 8.2 113 47-182 42-157 (225)
149 2xcb_A PCRH, regulatory protei 98.9 7.8E-10 2.7E-14 94.8 3.1 93 68-183 5-97 (142)
150 3mkr_A Coatomer subunit epsilo 98.8 2.5E-09 8.6E-14 103.7 6.7 55 121-175 183-237 (291)
151 3cv0_A Peroxisome targeting si 98.8 3.9E-09 1.3E-13 102.2 7.8 101 47-170 172-272 (327)
152 1xnf_A Lipoprotein NLPI; TPR, 98.8 1.1E-08 3.7E-13 96.7 10.5 104 47-173 77-250 (275)
153 1qqe_A Vesicular transport pro 98.8 3.7E-09 1.3E-13 102.3 7.3 106 47-175 117-236 (292)
154 1wao_1 Serine/threonine protei 98.8 3.8E-09 1.3E-13 109.8 7.6 104 47-173 40-156 (477)
155 3cv0_A Peroxisome targeting si 98.8 5.2E-09 1.8E-13 101.3 7.9 109 46-177 20-128 (327)
156 2vsy_A XCC0866; transferase, g 98.8 5.6E-09 1.9E-13 110.8 8.2 105 47-174 57-164 (568)
157 3ma5_A Tetratricopeptide repea 98.8 1.2E-09 4.1E-14 87.8 2.2 76 76-174 2-77 (100)
158 3mkr_A Coatomer subunit epsilo 98.8 1.5E-08 5.2E-13 98.1 10.1 97 59-178 178-275 (291)
159 1a17_A Serine/threonine protei 98.8 1.9E-08 6.5E-13 87.2 8.9 97 47-166 47-145 (166)
160 4ic3_A E3 ubiquitin-protein li 98.8 2.6E-09 8.8E-14 80.9 2.7 43 201-247 23-66 (74)
161 1v87_A Deltex protein 2; ring- 98.8 6E-09 2.1E-13 86.1 5.0 47 201-247 24-93 (114)
162 4ap4_A E3 ubiquitin ligase RNF 98.8 2.5E-09 8.4E-14 90.9 2.7 48 200-247 5-59 (133)
163 1qqe_A Vesicular transport pro 98.7 1.2E-08 4E-13 98.8 7.2 106 46-174 76-194 (292)
164 2if4_A ATFKBP42; FKBP-like, al 98.7 3.7E-09 1.3E-13 104.8 3.5 102 49-173 232-334 (338)
165 4g1t_A Interferon-induced prot 98.7 2.5E-08 8.4E-13 102.5 9.5 116 47-185 51-185 (472)
166 3fp2_A TPR repeat-containing p 98.7 1.3E-08 4.5E-13 106.1 7.4 107 47-177 243-349 (537)
167 2ecl_A Ring-box protein 2; RNF 98.7 8.1E-09 2.8E-13 79.6 4.3 48 200-247 13-75 (81)
168 1dce_A Protein (RAB geranylger 98.7 2.7E-08 9.4E-13 105.4 9.3 115 46-183 62-189 (567)
169 2xpi_A Anaphase-promoting comp 98.7 1.8E-08 6.1E-13 106.7 7.9 112 47-181 475-593 (597)
170 1kt0_A FKBP51, 51 kDa FK506-bi 98.7 2.7E-08 9.3E-13 102.8 9.0 97 47-166 317-414 (457)
171 2gw1_A Mitochondrial precursor 98.7 1.9E-08 6.5E-13 104.0 7.3 112 48-182 373-493 (514)
172 2fbn_A 70 kDa peptidylprolyl i 98.7 3.9E-08 1.3E-12 88.9 8.5 98 47-167 88-186 (198)
173 2bay_A PRE-mRNA splicing facto 98.7 4.8E-09 1.6E-13 75.8 1.8 46 202-247 3-49 (61)
174 3rkv_A Putative peptidylprolyl 98.7 3.7E-08 1.3E-12 86.0 7.8 89 44-155 60-149 (162)
175 2ond_A Cleavage stimulation fa 98.7 8E-08 2.7E-12 93.5 10.8 109 47-178 50-174 (308)
176 2ond_A Cleavage stimulation fa 98.7 4.9E-08 1.7E-12 95.0 9.1 115 47-184 99-215 (308)
177 2c2l_A CHIP, carboxy terminus 98.7 1.4E-08 4.9E-13 97.7 5.1 108 46-176 37-173 (281)
178 4gcn_A Protein STI-1; structur 98.6 9.4E-09 3.2E-13 86.4 3.1 71 81-174 8-78 (127)
179 1dce_A Protein (RAB geranylger 98.6 4.2E-08 1.4E-12 104.0 8.8 117 45-184 105-238 (567)
180 3upv_A Heat shock protein STI1 98.6 1.3E-08 4.6E-13 84.7 3.9 82 80-184 3-84 (126)
181 2kck_A TPR repeat; tetratricop 98.6 3.2E-08 1.1E-12 79.4 5.9 87 76-185 1-89 (112)
182 2y1n_A E3 ubiquitin-protein li 98.6 1.3E-08 4.4E-13 100.5 3.9 46 202-247 332-378 (389)
183 2vje_A E3 ubiquitin-protein li 98.6 1.3E-08 4.3E-13 74.6 2.7 48 199-246 5-55 (64)
184 1na3_A Designed protein CTPR2; 98.6 1.9E-08 6.6E-13 78.0 4.0 80 80-182 8-87 (91)
185 3edt_B KLC 2, kinesin light ch 98.6 1.4E-08 5E-13 95.7 3.9 101 44-167 40-156 (283)
186 3k9i_A BH0479 protein; putativ 98.6 4.5E-08 1.5E-12 80.6 6.3 88 44-165 24-111 (117)
187 2ecg_A Baculoviral IAP repeat- 98.6 1.1E-08 3.9E-13 77.5 2.4 43 201-247 24-67 (75)
188 3bee_A Putative YFRE protein; 98.6 5.6E-08 1.9E-12 77.0 6.6 85 77-181 2-86 (93)
189 1ihg_A Cyclophilin 40; ppiase 98.6 1.1E-07 3.7E-12 95.4 10.2 91 47-160 273-363 (370)
190 2l6j_A TPR repeat-containing p 98.6 4.5E-08 1.5E-12 78.9 6.1 83 81-186 4-92 (111)
191 2xpi_A Anaphase-promoting comp 98.6 7.6E-08 2.6E-12 101.8 9.6 111 47-180 373-483 (597)
192 2vje_B MDM4 protein; proto-onc 98.6 1.4E-08 4.9E-13 74.0 2.7 47 200-246 5-54 (63)
193 1pc2_A Mitochondria fission pr 98.6 3.4E-08 1.2E-12 84.8 5.4 104 62-188 13-121 (152)
194 2vyi_A SGTA protein; chaperone 98.6 6.9E-08 2.4E-12 79.6 6.9 85 47-154 46-130 (131)
195 3sz7_A HSC70 cochaperone (SGT) 98.6 5.4E-08 1.8E-12 85.1 6.5 82 46-150 44-125 (164)
196 2kc7_A BFR218_protein; tetratr 98.6 8.5E-08 2.9E-12 76.0 6.8 69 84-175 3-72 (99)
197 2lni_A Stress-induced-phosphop 98.6 7.8E-08 2.7E-12 79.8 6.5 84 47-153 50-133 (133)
198 2ifu_A Gamma-SNAP; membrane fu 98.6 6E-08 2E-12 94.4 6.4 105 46-175 115-231 (307)
199 1hxi_A PEX5, peroxisome target 98.6 6.8E-08 2.3E-12 80.4 5.8 81 82-185 18-98 (121)
200 4a1s_A PINS, partner of inscut 98.6 6.1E-08 2.1E-12 97.5 6.6 102 44-168 45-156 (411)
201 3edt_B KLC 2, kinesin light ch 98.6 7.5E-08 2.6E-12 90.7 6.7 101 44-167 82-198 (283)
202 3ma5_A Tetratricopeptide repea 98.5 1.3E-07 4.4E-12 75.7 7.0 83 45-150 5-89 (100)
203 3dpl_R Ring-box protein 1; ubi 98.5 4.8E-08 1.6E-12 79.0 4.4 46 201-246 36-99 (106)
204 3dra_A Protein farnesyltransfe 98.5 1.1E-07 3.7E-12 92.6 7.8 117 47-186 103-234 (306)
205 3dra_A Protein farnesyltransfe 98.5 1.6E-07 5.5E-12 91.4 7.9 114 47-183 67-191 (306)
206 1zu2_A Mitochondrial import re 98.5 1.2E-07 4.2E-12 82.2 6.2 72 44-138 33-125 (158)
207 3nf1_A KLC 1, kinesin light ch 98.5 7.5E-08 2.5E-12 92.3 5.4 104 44-170 150-310 (311)
208 3ro2_A PINS homolog, G-protein 98.5 1.2E-07 4E-12 91.5 6.7 103 47-172 5-117 (338)
209 3dss_A Geranylgeranyl transfer 98.5 2.8E-07 9.5E-12 90.4 9.4 113 44-179 105-234 (331)
210 3q49_B STIP1 homology and U bo 98.5 9.9E-08 3.4E-12 80.1 5.4 87 75-184 3-89 (137)
211 4g1t_A Interferon-induced prot 98.5 1.7E-07 5.9E-12 96.1 8.1 124 47-174 247-370 (472)
212 3ro3_A PINS homolog, G-protein 98.5 8.2E-08 2.8E-12 82.1 4.8 104 43-169 5-120 (164)
213 3u3w_A Transcriptional activat 98.5 6.6E-08 2.3E-12 93.3 4.6 101 45-168 153-267 (293)
214 4ap4_A E3 ubiquitin ligase RNF 98.5 3.4E-08 1.2E-12 83.7 1.9 49 199-247 69-124 (133)
215 2yho_A E3 ubiquitin-protein li 98.5 5.1E-08 1.7E-12 74.6 2.5 42 202-247 18-60 (79)
216 3q7a_A Farnesyltransferase alp 98.5 3.5E-07 1.2E-11 90.1 9.2 95 60-177 67-164 (349)
217 3q7a_A Farnesyltransferase alp 98.5 3.1E-07 1.1E-11 90.5 8.3 121 49-184 125-254 (349)
218 4f3v_A ESX-1 secretion system 98.4 2E-07 6.7E-12 89.1 6.5 113 45-182 134-251 (282)
219 2ea5_A Cell growth regulator w 98.4 1.6E-07 5.3E-12 69.5 4.6 46 198-247 11-57 (68)
220 2hr2_A Hypothetical protein; a 98.4 1E-07 3.4E-12 82.9 4.1 73 46-141 56-139 (159)
221 3sf4_A G-protein-signaling mod 98.4 1.5E-07 5.2E-12 93.8 5.9 103 46-171 8-120 (406)
222 2qfc_A PLCR protein; TPR, HTH, 98.4 1.9E-07 6.5E-12 90.0 6.1 100 46-168 154-267 (293)
223 3qou_A Protein YBBN; thioredox 98.4 2.3E-07 7.8E-12 89.5 6.6 95 49-166 187-283 (287)
224 3nf1_A KLC 1, kinesin light ch 98.4 3.3E-07 1.1E-11 87.7 7.6 106 40-168 20-141 (311)
225 3ulq_A Response regulator aspa 98.4 2.5E-07 8.6E-12 92.6 6.9 102 43-167 139-253 (383)
226 1ouv_A Conserved hypothetical 98.4 4.6E-07 1.6E-11 85.9 8.1 106 46-180 5-118 (273)
227 3dss_A Geranylgeranyl transfer 98.4 4E-07 1.4E-11 89.3 7.8 116 47-185 64-192 (331)
228 2r5s_A Uncharacterized protein 98.4 1.5E-07 5.3E-12 83.3 4.2 83 61-166 88-172 (176)
229 3u3w_A Transcriptional activat 98.4 4.3E-07 1.5E-11 87.5 7.6 99 50-171 118-229 (293)
230 1na0_A Designed protein CTPR3; 98.4 6E-07 2E-11 73.1 7.2 83 47-152 43-125 (125)
231 3ulq_A Response regulator aspa 98.4 2.8E-07 9.7E-12 92.2 6.3 103 44-169 181-295 (383)
232 2kat_A Uncharacterized protein 98.4 8.1E-07 2.8E-11 72.4 7.8 84 47-153 19-104 (115)
233 3ro3_A PINS homolog, G-protein 98.4 2.6E-07 9E-12 78.9 5.0 101 46-169 48-160 (164)
234 1elw_A TPR1-domain of HOP; HOP 98.4 7.4E-07 2.5E-11 71.8 7.1 79 47-148 38-116 (118)
235 3q15_A PSP28, response regulat 98.4 7.9E-07 2.7E-11 88.9 8.7 103 45-170 180-293 (378)
236 3gw4_A Uncharacterized protein 98.3 2.9E-07 1E-11 82.6 4.9 102 45-169 24-138 (203)
237 2ifu_A Gamma-SNAP; membrane fu 98.3 1.2E-07 4E-12 92.3 2.2 50 121-170 132-187 (307)
238 1wim_A KIAA0161 protein; ring 98.3 9.9E-08 3.4E-12 75.7 0.8 45 201-245 4-61 (94)
239 2qfc_A PLCR protein; TPR, HTH, 98.3 1.2E-06 4.1E-11 84.4 8.4 98 49-169 117-227 (293)
240 3t6p_A Baculoviral IAP repeat- 98.3 1.9E-07 6.4E-12 91.7 2.4 43 201-247 294-337 (345)
241 2v5f_A Prolyl 4-hydroxylase su 98.3 1.7E-06 5.9E-11 69.7 7.5 76 47-145 5-87 (104)
242 3ly7_A Transcriptional activat 98.3 1.2E-06 4.2E-11 86.3 7.8 124 46-172 195-344 (372)
243 3n71_A Histone lysine methyltr 98.3 9.3E-07 3.2E-11 91.7 7.2 112 46-180 308-440 (490)
244 2dba_A Smooth muscle cell asso 98.3 2.1E-06 7.3E-11 72.4 8.1 79 47-148 65-143 (148)
245 3sf4_A G-protein-signaling mod 98.3 5.6E-07 1.9E-11 89.7 5.1 103 46-171 186-300 (406)
246 2xev_A YBGF; tetratricopeptide 98.2 2.1E-06 7.2E-11 71.0 7.5 79 47-148 39-120 (129)
247 3qww_A SET and MYND domain-con 98.2 9.8E-07 3.4E-11 90.1 6.3 113 47-182 298-431 (433)
248 4a0k_B E3 ubiquitin-protein li 98.2 1.6E-07 5.6E-12 76.9 0.4 46 201-246 47-110 (117)
249 3q15_A PSP28, response regulat 98.2 1.4E-06 4.8E-11 87.0 6.9 114 44-180 138-269 (378)
250 3qwp_A SET and MYND domain-con 98.2 2.7E-06 9.3E-11 86.8 9.1 119 45-186 285-424 (429)
251 1ouv_A Conserved hypothetical 98.2 2.5E-06 8.4E-11 80.8 7.9 95 47-168 38-144 (273)
252 3ro2_A PINS homolog, G-protein 98.2 8.6E-07 2.9E-11 85.3 4.5 103 46-171 182-296 (338)
253 3rjv_A Putative SEL1 repeat pr 98.2 1.2E-06 4.2E-11 80.2 5.2 108 45-180 16-133 (212)
254 2ooe_A Cleavage stimulation fa 98.2 3E-06 1E-10 88.8 8.6 114 47-183 321-436 (530)
255 2d8s_A Cellular modulator of i 98.2 1.7E-06 5.9E-11 66.0 4.5 50 199-248 12-70 (80)
256 3rjv_A Putative SEL1 repeat pr 98.1 1.7E-06 5.8E-11 79.3 5.1 107 47-180 50-170 (212)
257 4a1s_A PINS, partner of inscut 98.1 1.5E-06 5.1E-11 87.2 5.1 100 47-169 86-214 (411)
258 2ooe_A Cleavage stimulation fa 98.1 9.5E-06 3.2E-10 85.0 11.3 105 47-174 272-392 (530)
259 3gw4_A Uncharacterized protein 98.1 1.8E-06 6.1E-11 77.3 4.8 104 44-170 63-179 (203)
260 1elr_A TPR2A-domain of HOP; HO 98.1 3.3E-06 1.1E-10 69.3 5.4 84 47-154 38-128 (131)
261 3m62_A Ubiquitin conjugation f 98.1 2.2E-06 7.5E-11 93.1 5.1 75 197-273 886-961 (968)
262 4f3v_A ESX-1 secretion system 98.0 6E-06 2E-10 78.8 5.4 97 48-168 103-201 (282)
263 1nzn_A CGI-135 protein, fissio 97.9 9.4E-06 3.2E-10 67.1 5.4 107 61-187 15-123 (126)
264 2v5f_A Prolyl 4-hydroxylase su 97.9 1.2E-05 4.2E-10 64.6 6.0 82 84-188 8-96 (104)
265 2ct0_A Non-SMC element 1 homol 97.9 2.7E-05 9.2E-10 58.0 6.7 49 199-247 12-63 (74)
266 1hz4_A MALT regulatory protein 97.8 1.5E-05 5E-10 79.0 5.7 103 46-171 52-168 (373)
267 1klx_A Cysteine rich protein B 97.7 2.9E-05 1E-09 65.8 5.1 88 53-167 31-126 (138)
268 1hz4_A MALT regulatory protein 97.7 6.6E-05 2.3E-09 74.2 8.2 103 44-169 11-124 (373)
269 3bee_A Putative YFRE protein; 97.7 4.9E-05 1.7E-09 59.8 5.4 70 46-138 5-77 (93)
270 3u64_A Protein TP_0956; tetrat 97.7 2.3E-05 7.8E-10 74.3 3.9 85 64-171 180-273 (301)
271 3n71_A Histone lysine methyltr 97.5 6.7E-05 2.3E-09 77.7 5.5 103 41-166 345-463 (490)
272 2xm6_A Protein corresponding t 97.5 6.1E-05 2.1E-09 77.9 5.2 94 50-170 331-435 (490)
273 1xi4_A Clathrin heavy chain; a 97.5 0.00021 7.1E-09 81.0 8.8 103 48-181 1196-1323(1630)
274 1b89_A Protein (clathrin heavy 97.4 0.00016 5.4E-09 73.1 6.3 101 48-181 123-250 (449)
275 3e4b_A ALGK; tetratricopeptide 97.4 0.00015 5.3E-09 74.3 6.4 103 49-179 178-290 (452)
276 3e4b_A ALGK; tetratricopeptide 97.4 0.00038 1.3E-08 71.4 8.9 99 51-181 217-327 (452)
277 3o48_A Mitochondria fission 1 97.4 0.00045 1.5E-08 57.2 7.3 68 121-188 60-128 (134)
278 1pc2_A Mitochondria fission pr 97.3 0.00017 5.8E-09 61.8 4.8 78 47-147 32-114 (152)
279 2xm6_A Protein corresponding t 97.3 0.00042 1.4E-08 71.5 8.0 104 46-178 38-153 (490)
280 1y8m_A FIS1; mitochondria, unk 97.3 0.00056 1.9E-08 57.4 7.0 68 121-188 59-127 (144)
281 3mv2_B Coatomer subunit epsilo 97.2 0.00068 2.3E-08 65.4 8.4 101 48-171 101-211 (310)
282 1klx_A Cysteine rich protein B 97.2 0.00034 1.2E-08 59.1 4.9 89 60-179 8-100 (138)
283 4b4t_Q 26S proteasome regulato 97.2 0.00067 2.3E-08 68.2 7.7 104 44-170 52-207 (434)
284 3k1l_B Fancl; UBC, ring, RWD, 97.2 9.3E-05 3.2E-09 70.8 1.2 49 199-247 305-372 (381)
285 3ffl_A Anaphase-promoting comp 97.1 0.00077 2.6E-08 58.1 6.2 95 47-164 20-148 (167)
286 3vk6_A E3 ubiquitin-protein li 97.1 0.00034 1.2E-08 54.3 3.3 43 204-246 3-47 (101)
287 1vyx_A ORF K3, K3RING; zinc-bi 97.1 0.00036 1.2E-08 49.7 3.2 47 200-246 4-57 (60)
288 3mv2_B Coatomer subunit epsilo 97.0 0.00092 3.2E-08 64.5 7.1 98 53-178 182-293 (310)
289 3u64_A Protein TP_0956; tetrat 96.9 0.0031 1.1E-07 59.7 9.3 87 76-174 147-241 (301)
290 4b4t_Q 26S proteasome regulato 96.9 0.00077 2.6E-08 67.7 5.6 98 49-169 6-126 (434)
291 1xi4_A Clathrin heavy chain; a 96.7 0.0016 5.4E-08 74.0 6.6 66 78-171 1102-1167(1630)
292 1b89_A Protein (clathrin heavy 96.7 0.0021 7.1E-08 65.0 6.3 111 43-181 144-291 (449)
293 3qwp_A SET and MYND domain-con 96.3 0.0052 1.8E-07 62.4 6.5 74 37-133 319-400 (429)
294 3ly7_A Transcriptional activat 96.0 0.0057 2E-07 60.2 5.2 90 47-161 277-368 (372)
295 3qww_A SET and MYND domain-con 95.8 0.0049 1.7E-07 62.6 4.0 72 40-134 333-412 (433)
296 3mv2_A Coatomer subunit alpha; 95.6 0.24 8.1E-06 47.3 14.3 181 45-245 112-312 (325)
297 1nzn_A CGI-135 protein, fissio 95.5 0.026 9E-07 46.4 6.2 77 48-147 36-117 (126)
298 2ff4_A Probable regulatory pro 95.3 0.054 1.9E-06 54.0 9.5 99 45-166 113-233 (388)
299 3mkr_B Coatomer subunit alpha; 95.2 0.35 1.2E-05 46.1 14.0 183 46-245 101-303 (320)
300 2jun_A Midline-1; B-BOX, TRIM, 94.7 0.012 4.3E-07 46.5 2.1 33 201-233 2-38 (101)
301 3o48_A Mitochondria fission 1 94.5 0.04 1.4E-06 45.5 4.6 76 50-148 43-122 (134)
302 3nw0_A Non-structural maintena 94.1 0.036 1.2E-06 51.2 4.1 46 201-246 179-227 (238)
303 4e6h_A MRNA 3'-END-processing 94.0 0.12 4E-06 55.6 8.5 112 49-183 436-552 (679)
304 4e6h_A MRNA 3'-END-processing 93.5 0.15 5E-06 54.8 8.1 96 49-167 345-463 (679)
305 4h7y_A Dual specificity protei 93.4 0.31 1.1E-05 41.2 8.1 105 47-174 13-130 (161)
306 1y8m_A FIS1; mitochondria, unk 93.3 0.21 7.3E-06 41.7 7.0 77 48-147 40-120 (144)
307 3ffl_A Anaphase-promoting comp 93.0 0.13 4.3E-06 44.3 5.4 81 44-148 60-165 (167)
308 2ko5_A Ring finger protein Z; 91.7 0.16 5.5E-06 38.6 3.8 47 200-247 26-72 (99)
309 1zbp_A Hypothetical protein VP 90.2 0.78 2.7E-05 42.7 7.8 64 54-140 4-67 (273)
310 4gns_B Protein CSD3, chitin bi 88.6 0.43 1.5E-05 51.4 5.5 45 121-165 354-398 (754)
311 2uy1_A Cleavage stimulation fa 86.2 3.4 0.00012 42.2 10.5 38 48-86 214-251 (493)
312 2w2u_A Hypothetical P60 katani 84.2 0.97 3.3E-05 34.0 3.8 37 40-76 12-48 (83)
313 4gns_B Protein CSD3, chitin bi 84.1 0.76 2.6E-05 49.5 4.5 49 49-97 339-387 (754)
314 2uy1_A Cleavage stimulation fa 84.0 5.4 0.00019 40.7 10.8 93 49-165 288-381 (493)
315 1zbp_A Hypothetical protein VP 82.2 1.3 4.4E-05 41.2 4.6 60 121-180 14-73 (273)
316 3i2d_A E3 SUMO-protein ligase 80.8 0.99 3.4E-05 43.9 3.5 63 200-264 247-314 (371)
317 1ya0_A SMG-7 transcript varian 78.8 4.2 0.00014 41.6 7.6 79 49-150 154-232 (497)
318 4b4t_R RPN7, 26S proteasome re 78.3 1.5 5E-05 44.2 4.0 94 50-166 134-236 (429)
319 4fo9_A E3 SUMO-protein ligase 76.9 1.8 6.1E-05 42.0 3.9 63 200-264 213-280 (360)
320 3mkq_B Coatomer subunit alpha; 76.2 11 0.00039 32.5 8.5 84 47-166 34-117 (177)
321 2v6y_A AAA family ATPase, P60 75.3 3.4 0.00011 31.0 4.3 34 43-76 7-40 (83)
322 4g26_A Pentatricopeptide repea 75.2 8.4 0.00029 39.4 8.8 91 50-165 108-202 (501)
323 1ya0_A SMG-7 transcript varian 74.9 3.2 0.00011 42.4 5.5 62 121-182 169-230 (497)
324 3kae_A CDC27, possible protein 73.1 8.3 0.00028 33.2 6.5 96 53-176 39-152 (242)
325 2gmg_A Hypothetical protein PF 72.7 1.4 4.6E-05 34.5 1.5 30 212-246 65-94 (105)
326 4a5x_A MITD1, MIT domain-conta 72.4 4.7 0.00016 30.4 4.5 49 114-172 9-57 (86)
327 3txn_A 26S proteasome regulato 72.2 4.4 0.00015 40.1 5.5 91 52-165 104-208 (394)
328 2lri_C Autoimmune regulator; Z 72.0 5.4 0.00019 28.4 4.5 48 199-246 9-60 (66)
329 3ax2_A Mitochondrial import re 71.2 7.8 0.00027 28.2 5.2 35 48-82 18-52 (73)
330 2ff4_A Probable regulatory pro 70.8 3.9 0.00013 40.4 4.8 61 49-132 173-233 (388)
331 1wil_A KIAA1045 protein; ring 70.5 5.5 0.00019 29.6 4.2 48 196-244 9-75 (89)
332 2v6x_A Vacuolar protein sortin 70.2 4.9 0.00017 30.1 4.2 36 41-76 7-42 (85)
333 2v6y_A AAA family ATPase, P60 69.6 7.1 0.00024 29.2 4.9 58 120-185 8-65 (83)
334 1wfd_A Hypothetical protein 15 67.8 38 0.0013 25.7 10.5 35 41-75 9-43 (93)
335 2cs3_A Protein C14ORF4, MY039 67.7 4.1 0.00014 29.8 3.0 36 199-234 12-51 (93)
336 2cpt_A SKD1 protein, vacuolar 67.1 6.1 0.00021 31.7 4.3 35 42-76 13-47 (117)
337 1om2_A Protein (mitochondrial 65.7 8.3 0.00028 29.6 4.6 38 42-79 15-52 (95)
338 4a5x_A MITD1, MIT domain-conta 64.5 42 0.0014 25.1 9.7 32 45-76 14-45 (86)
339 2crb_A Nuclear receptor bindin 63.0 12 0.0004 28.4 4.8 34 42-75 10-43 (97)
340 3mkq_A Coatomer beta'-subunit; 62.8 18 0.0006 38.7 8.5 20 147-166 745-764 (814)
341 1dvp_A HRS, hepatocyte growth 58.5 13 0.00043 33.4 5.3 74 158-231 110-194 (220)
342 2vkj_A TM1634; membrane protei 58.4 14 0.00048 27.7 4.5 34 44-77 50-83 (106)
343 2rpa_A Katanin P60 ATPase-cont 55.3 10 0.00036 27.9 3.4 30 47-76 12-41 (78)
344 2w2u_A Hypothetical P60 katani 55.1 22 0.00076 26.4 5.3 57 121-185 17-73 (83)
345 4fhn_B Nucleoporin NUP120; pro 54.6 11 0.00038 42.8 5.2 90 50-162 845-962 (1139)
346 4g26_A Pentatricopeptide repea 51.4 21 0.00071 36.4 6.3 86 61-171 84-175 (501)
347 4b4t_S RPN3, 26S proteasome re 50.0 19 0.00064 36.8 5.5 55 121-175 248-307 (523)
348 3zyq_A Hepatocyte growth facto 49.8 18 0.00062 32.6 4.9 33 199-231 161-197 (226)
349 1wfd_A Hypothetical protein 15 48.6 33 0.0011 26.0 5.5 48 118-173 10-57 (93)
350 1weo_A Cellulose synthase, cat 48.5 11 0.00038 28.3 2.6 45 202-246 16-68 (93)
351 4h7y_A Dual specificity protei 48.4 20 0.0007 30.1 4.5 68 48-139 62-129 (161)
352 2k16_A Transcription initiatio 47.4 12 0.00041 27.1 2.7 48 199-246 15-69 (75)
353 1m3v_A FLIN4, fusion of the LI 47.4 10 0.00035 30.4 2.5 47 201-247 31-80 (122)
354 2dl1_A Spartin; SPG20, MIT, st 46.3 39 0.0013 26.8 5.6 42 121-170 20-61 (116)
355 1qsa_A Protein (soluble lytic 44.9 27 0.00093 36.6 5.9 84 59-166 264-347 (618)
356 1wd2_A Ariadne-1 protein homol 44.7 4.1 0.00014 28.4 -0.3 33 204-236 8-48 (60)
357 3ax2_A Mitochondrial import re 43.4 17 0.00057 26.4 2.8 37 142-178 21-57 (73)
358 2fiy_A Protein FDHE homolog; F 41.6 14 0.00049 35.0 2.9 46 200-245 180-231 (309)
359 2l5u_A Chromodomain-helicase-D 41.5 19 0.00064 25.0 2.8 45 198-244 7-57 (61)
360 3lpz_A GET4 (YOR164C homolog); 40.5 88 0.003 29.9 8.2 117 44-162 32-160 (336)
361 2jne_A Hypothetical protein YF 40.5 5.1 0.00017 30.6 -0.3 40 202-246 32-71 (101)
362 2v6x_A Vacuolar protein sortin 39.9 44 0.0015 24.7 4.9 47 118-172 8-54 (85)
363 1mm2_A MI2-beta; PHD, zinc fin 38.6 15 0.0005 25.6 1.8 47 199-245 6-56 (61)
364 2xjy_A Rhombotin-2; oncoprotei 38.5 16 0.00056 29.4 2.5 48 200-247 27-77 (131)
365 3fyb_A Protein of unknown func 38.1 9.9 0.00034 29.1 0.9 11 224-234 42-52 (104)
366 2o35_A Hypothetical protein DU 38.0 9.9 0.00034 29.1 0.9 11 224-234 43-53 (105)
367 2cfu_A SDSA1; SDS-hydrolase, l 37.3 26 0.0009 37.1 4.5 51 47-97 449-499 (658)
368 2pv0_B DNA (cytosine-5)-methyl 37.2 25 0.00085 34.3 3.8 48 198-245 89-148 (386)
369 2jmo_A Parkin; IBR, E3 ligase, 37.2 6.9 0.00024 29.0 -0.1 20 219-240 55-74 (80)
370 2dl1_A Spartin; SPG20, MIT, st 36.5 48 0.0016 26.3 4.7 34 42-75 17-50 (116)
371 2wpv_A GET4, UPF0363 protein Y 36.5 1.2E+02 0.0043 28.5 8.6 119 44-164 30-160 (312)
372 2oo2_A Hypothetical protein AF 36.5 50 0.0017 24.7 4.6 33 40-72 28-60 (86)
373 2jrp_A Putative cytoplasmic pr 36.4 5.7 0.00019 29.5 -0.6 39 203-246 3-41 (81)
374 2pmr_A Uncharacterized protein 36.2 49 0.0017 24.8 4.5 32 40-71 32-63 (87)
375 1z60_A TFIIH basal transcripti 35.8 32 0.0011 23.8 3.1 39 204-242 17-58 (59)
376 3u5n_A E3 ubiquitin-protein li 35.6 12 0.0004 33.3 1.2 45 201-245 6-54 (207)
377 2lbm_A Transcriptional regulat 35.4 29 0.001 28.7 3.5 46 199-244 60-116 (142)
378 1rut_X Flinc4, fusion protein 35.4 11 0.00038 32.8 1.0 48 200-247 30-80 (188)
379 1erd_A Pheromone ER-2; NMR {Eu 34.5 8.6 0.00029 22.9 0.1 15 218-232 10-24 (40)
380 1zbd_B Rabphilin-3A; G protein 34.3 25 0.00084 28.9 2.8 31 200-230 53-88 (134)
381 2cpt_A SKD1 protein, vacuolar 34.0 63 0.0022 25.7 5.2 48 118-173 13-60 (117)
382 1f62_A Transcription factor WS 34.0 29 0.00098 22.8 2.7 41 204-244 2-49 (51)
383 4b4t_R RPN7, 26S proteasome re 33.2 62 0.0021 32.0 6.3 68 77-167 127-197 (429)
384 4b4t_P 26S proteasome regulato 33.0 1.1E+02 0.0038 30.3 8.2 97 47-166 137-246 (445)
385 3txn_A 26S proteasome regulato 32.9 91 0.0031 30.5 7.2 97 48-167 20-168 (394)
386 3mkq_A Coatomer beta'-subunit; 32.8 47 0.0016 35.3 5.7 19 79-97 679-697 (814)
387 3o36_A Transcription intermedi 32.3 17 0.00058 31.5 1.6 44 202-245 4-51 (184)
388 1wy6_A Hypothetical protein ST 31.4 83 0.0029 26.1 5.4 64 47-133 90-154 (172)
389 3eab_A Spastin; spastin, MIT, 30.9 39 0.0013 25.5 3.2 34 42-75 11-47 (89)
390 2xqn_T Testin, TESS; metal-bin 30.8 32 0.0011 27.4 3.1 46 200-247 28-74 (126)
391 3pwf_A Rubrerythrin; non heme 30.3 32 0.0011 29.5 3.0 9 237-245 154-162 (170)
392 1vfy_A Phosphatidylinositol-3- 29.9 26 0.00088 25.3 2.0 30 201-230 10-43 (73)
393 3kae_A CDC27, possible protein 29.8 1.5E+02 0.0052 25.4 7.0 82 53-165 8-89 (242)
394 1fp0_A KAP-1 corepressor; PHD 29.8 32 0.0011 25.9 2.5 47 199-245 22-72 (88)
395 1joc_A EEA1, early endosomal a 28.7 21 0.0007 28.9 1.4 30 202-231 69-102 (125)
396 2lcq_A Putative toxin VAPC6; P 28.5 19 0.00064 30.6 1.2 11 237-247 149-159 (165)
397 2zet_C Melanophilin; complex, 27.6 35 0.0012 28.7 2.7 45 200-244 66-116 (153)
398 3ql9_A Transcriptional regulat 27.6 52 0.0018 26.7 3.6 46 199-244 54-110 (129)
399 3spa_A Mtrpol, DNA-directed RN 27.5 1.7E+02 0.0057 32.8 8.6 94 49-166 129-229 (1134)
400 3lqh_A Histone-lysine N-methyl 27.2 18 0.00062 31.4 0.9 42 204-245 4-63 (183)
401 2crb_A Nuclear receptor bindin 26.4 40 0.0014 25.5 2.5 28 138-165 15-42 (97)
402 3mjh_B Early endosome antigen 25.4 17 0.00056 22.1 0.2 13 203-215 6-18 (34)
403 2lv9_A Histone-lysine N-methyl 25.2 39 0.0013 25.9 2.4 43 201-244 27-75 (98)
404 1om2_A Protein (mitochondrial 25.1 26 0.00087 26.8 1.3 37 142-178 24-60 (95)
405 2ro1_A Transcription intermedi 24.9 27 0.00094 30.4 1.6 43 203-245 3-49 (189)
406 3a1b_A DNA (cytosine-5)-methyl 24.6 52 0.0018 27.7 3.2 46 198-244 75-133 (159)
407 2ynq_A ESSB; membrane protein, 24.3 1.5E+02 0.0052 24.9 5.9 88 48-163 9-98 (161)
408 3jq1_A SUSD superfamily protei 24.3 96 0.0033 31.2 5.9 86 81-166 110-208 (481)
409 1y02_A CARP2, FYVE-ring finger 24.2 9 0.00031 30.8 -1.5 45 201-245 18-66 (120)
410 1xwh_A Autoimmune regulator; P 24.1 19 0.00064 25.4 0.3 46 200-245 6-55 (66)
411 4b4t_S RPN3, 26S proteasome re 23.8 3.4E+02 0.011 27.6 9.6 99 47-174 270-380 (523)
412 2yw8_A RUN and FYVE domain-con 23.8 33 0.0011 25.3 1.7 30 202-231 19-52 (82)
413 2rgt_A Fusion of LIM/homeobox 23.4 64 0.0022 27.2 3.8 46 200-247 31-76 (169)
414 2xze_A STAM-binding protein; h 23.4 80 0.0027 26.2 4.2 37 40-76 33-69 (146)
415 2cfu_A SDSA1; SDS-hydrolase, l 23.4 78 0.0027 33.4 5.1 46 141-186 452-497 (658)
416 1z2q_A LM5-1; membrane protein 22.8 34 0.0012 25.4 1.6 31 201-231 20-54 (84)
417 2jtn_A LIM domain-binding prot 22.5 55 0.0019 28.0 3.2 45 201-247 86-130 (182)
418 1yuz_A Nigerythrin; rubrythrin 22.5 1.9E+02 0.0066 25.2 6.8 9 237-245 187-195 (202)
419 2ymb_A MITD1, MIT domain-conta 22.1 19 0.00064 33.1 0.0 34 43-76 19-52 (257)
420 2yql_A PHD finger protein 21A; 22.0 16 0.00053 24.8 -0.4 44 200-243 7-54 (56)
421 2yhe_A SEC-alkyl sulfatase; hy 27.5 19 0.00065 38.2 0.0 51 47-97 461-511 (668)
422 2e2a_A Protein (enzyme IIA); h 21.4 1.1E+02 0.0038 23.7 4.3 31 45-75 18-48 (105)
423 2l43_A N-teminal domain from h 21.2 29 0.001 26.0 0.9 48 199-246 22-76 (88)
424 2cup_A Skeletal muscle LIM-pro 21.2 52 0.0018 24.8 2.5 45 201-247 32-77 (101)
425 2ct7_A Ring finger protein 31; 21.1 19 0.00064 26.9 -0.2 28 205-232 28-61 (86)
426 1wcr_A PTS system, N, N'-diace 21.0 1.2E+02 0.0039 23.5 4.3 31 45-75 16-46 (103)
427 3snx_A SUSD homolog, putative 21.0 1.2E+02 0.0039 30.4 5.6 86 82-167 108-220 (460)
428 4gq2_M Nucleoporin NUP120; bet 20.9 1.6E+02 0.0056 32.4 7.3 40 126-165 828-867 (950)
429 2ysm_A Myeloid/lymphoid or mix 20.8 47 0.0016 25.9 2.1 43 201-243 6-55 (111)
430 1wen_A Inhibitor of growth fam 20.6 92 0.0031 22.2 3.5 45 200-245 14-65 (71)
431 2puy_A PHD finger protein 21A; 20.5 22 0.00075 24.4 0.1 45 201-245 4-52 (60)
No 1
>3m65_A ATP-dependent protease LA 1; coiled-coil, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=4.8e-33 Score=258.33 Aligned_cols=193 Identities=13% Similarity=0.268 Sum_probs=167.6
Q ss_pred ccccceee--eccCCCccCccccchhHHHHHHHHHhCCceEEEEEeCCC------CCccccccceEEEEEeeecCCceEE
Q 011050 288 LMPLFVMD--VVIPCQRFPLHIFEPRYRLMVRRIMEGNHRMGMVIIDPT------TGSVADFACEVEITECEPLPDGRFV 359 (494)
Q Consensus 288 ~lPl~~l~--v~fP~~~~pl~i~~~~~~~~~~~~~~~~~~~~v~~~~~~------~~~~~~iG~~~~I~~~~~~~dg~~~ 359 (494)
.+|+||++ |+|||+++||+||+++|+.|+++++++++.||++++.+. .+++|.|||+|+|.++.+++||++.
T Consensus 8 ~lPl~PLr~~vlfPg~~~pL~V~~~r~~~~v~~a~~~~~~i~lv~q~~~~~~~p~~~~l~~vGt~a~I~~~~~l~dG~~~ 87 (209)
T 3m65_A 8 SIPLLPLRGLLVYPTMVLHLDVGRDKSVQALEQAMMHDHMIFLATQQDISIDEPGEDEIFTVGTYTKIKQMLKLPNGTIR 87 (209)
T ss_dssp EEEEEEESSCCCCTTCEEEEEECSHHHHHHHHHHTTTTSEEEEEEBSSTTCSSCCGGGBCSEEEEEEEEEEEECTTSCEE
T ss_pred ceEEEEeCCccccCCccEEEEECCHHHHHHHHHHHhcCCEEEEEEecCCCcCCCCcchhhheeEEEEEEEEEECCCCeEE
Confidence 49999995 999999999999999999999999999999999998532 2478999999999999999999999
Q ss_pred EEEEeccceEEeeeecCCCeeEEEEEEecCCCCCCcccHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhcC
Q 011050 360 LEIESRRRFRILRSWDQDGYRVAEIEWVQDIHPEGVEDRADLQDLTNNAAEYARLWLRREKESARQDRRRLEKLLNVEVM 439 (494)
Q Consensus 360 v~~~g~~R~~i~~~~~~~~~~~a~ve~l~d~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 439 (494)
|.++|.+||+|.++.+.+||+.|+|+++++...+ ..+.+++.+.+.+.+.+|.......+. ++...
T Consensus 88 v~v~G~~R~ri~~~~~~~~~~~a~v~~~~~~~~~----~~e~~al~~~l~~~~~~~~~~~~~~~~-------e~~~~--- 153 (209)
T 3m65_A 88 VLVEGLKRAHIVKYNEHEDYTSVDIQLIHEDDSK----DTEDEALMRTLLDHFDQYIKISKKISA-------ETYAA--- 153 (209)
T ss_dssp EEEEEEEEEEEEEEEECSSSEEEEEEECCCC--C----CSHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH---
T ss_pred EEEEEEEEEEEEEEEcCCCcEEEEEEEecCCCCC----CHHHHHHHHHHHHHHHHHHHhCCCCCH-------HHHHH---
Confidence 9999999999999999999999999999885432 235678888899988888876655543 22222
Q ss_pred CCCCCCcchhHHHHHhcCCCChHHHhhhccCCCHHHHHHHHHHHHHhhhccccCC
Q 011050 440 MPPSQDPERFSFWLATLSDRRPSERLELLRIRDTRERIRRGLIFLRAEEQGCRLQ 494 (494)
Q Consensus 440 ~~~~~~~~~l~~~ia~~l~l~~~~kq~LLe~~d~~~Rl~~l~~~L~~~~~~~~~~ 494 (494)
+.+.+||++|+|++|++++++.++||+|||+.|+.+|+++++.+|++|++...+|
T Consensus 154 ~~~~~dp~~lad~ia~~l~l~~~ekQ~lLe~~d~~~Rl~~l~~~L~~E~e~~~l~ 208 (209)
T 3m65_A 154 VTDIEEPGRMADIVASHLPLKLKDKQDILETADVKDRLNKVIDFINNEKEVLEIE 208 (209)
T ss_dssp HHTCCCHHHHHHHHHHHSCCCHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHccCCHHHHHHHHHHhCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 2357999999999999999999999999999999999999999999999876654
No 2
>3ljc_A ATP-dependent protease LA; LON N-domain, allosteric enzyme, ATP-binding, DNA-binding, H nucleotide-binding, serine protease, stress respo; 2.60A {Escherichia coli}
Probab=99.97 E-value=7.8e-32 Score=257.13 Aligned_cols=192 Identities=17% Similarity=0.242 Sum_probs=166.3
Q ss_pred ccccceee--eccCCCccCccccchhHHHHHHHHHhCCceEEEEEeCC------CCCccccccceEEEEEeeecCCceEE
Q 011050 288 LMPLFVMD--VVIPCQRFPLHIFEPRYRLMVRRIMEGNHRMGMVIIDP------TTGSVADFACEVEITECEPLPDGRFV 359 (494)
Q Consensus 288 ~lPl~~l~--v~fP~~~~pl~i~~~~~~~~~~~~~~~~~~~~v~~~~~------~~~~~~~iG~~~~I~~~~~~~dg~~~ 359 (494)
.+|+||++ |+|||+++||+||+++|+.|+++|+++++.||++++.+ ..+++|.|||+|+|.++.+++||++.
T Consensus 17 ~lPl~PLr~~VlfPg~~~pL~I~~~r~~~~v~~a~~~~~~~~lv~q~~~~~~~p~~~~l~~vGt~a~I~~~~~lpdG~~~ 96 (252)
T 3ljc_A 17 EIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHDKKIMLVAQKEASTDEPGVNDLFTVGTVASILQMLKLPDGTVK 96 (252)
T ss_dssp CCEEEEESSCCCCBTCEEEEEECCTTTHHHHHHHHTTTTEEEEEEBCSSCCSSCCSSSBCSEEEEEEECCCBCCTTSCEE
T ss_pred ceeEEEeCCccccCCcceEEEECCHHHHHHHHHHHhcCCEEEEEEecCCCcCCCCccchhheeEEEEEEEEEECCCCeEE
Confidence 59999997 99999999999999999999999999999999999853 23579999999999999999999999
Q ss_pred EEEEeccceEEeeeecCCCeeEEEEEEecCCCCCCcccHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhcC
Q 011050 360 LEIESRRRFRILRSWDQDGYRVAEIEWVQDIHPEGVEDRADLQDLTNNAAEYARLWLRREKESARQDRRRLEKLLNVEVM 439 (494)
Q Consensus 360 v~~~g~~R~~i~~~~~~~~~~~a~ve~l~d~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 439 (494)
|.++|.+||+|.++.+.+||+.|+|+++++.+.+ ..+.+++.+.+.+.+.+|.......+. ++...
T Consensus 97 v~v~G~~R~rI~~~~~~~~~~~a~ve~l~d~~~~----~~e~~al~~~l~~~~~~~~~l~~~~~~-------e~~~~--- 162 (252)
T 3ljc_A 97 VLVEGLQRARISALSDNGEHFSAKAEYLESPTID----EREQEVLVRTAISQFEGYIKLNKKIPP-------EVLTS--- 162 (252)
T ss_dssp EEEEEEEEEECSEEEEETTEEEEECCCCCCCCSC----HHHHHHHHHHHHHHHHHHHHHHCSSCH-------HHHHH---
T ss_pred EEEEEEEEEEEEEEEcCCCcEEEEEEeecCCCCC----ChHHHHHHHHHHHHHHHHHHhcccCCH-------HHHHH---
Confidence 9999999999999998999999999999875432 246778888888888888765444332 22222
Q ss_pred CCCCCCcchhHHHHHhcCCCChHHHhhhccCCCHHHHHHHHHHHHHhhhccccC
Q 011050 440 MPPSQDPERFSFWLATLSDRRPSERLELLRIRDTRERIRRGLIFLRAEEQGCRL 493 (494)
Q Consensus 440 ~~~~~~~~~l~~~ia~~l~l~~~~kq~LLe~~d~~~Rl~~l~~~L~~~~~~~~~ 493 (494)
+...+||++|+|++|+++|++.++||+|||+.|+.+|+++++.+|.++++.-.+
T Consensus 163 ~~~~~dp~~Lad~ia~~l~l~~~eKQ~LLe~~d~~~Rl~~l~~lL~~e~e~~~l 216 (252)
T 3ljc_A 163 LNSIDDPARLADTIAAHMPLKLADKQSVLEMSDVNERLEYLMAMMESEIDLLQV 216 (252)
T ss_dssp TTSCCCHHHHHHHHHHTSCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHccCCHHHHHHHHHHhCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999999999999999999999999999999999999876543
No 3
>1zbo_A Hypothetical protein BPP1347; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.60A {Bordetella parapertussis} SCOP: b.122.1.10
Probab=99.97 E-value=1.4e-31 Score=248.59 Aligned_cols=190 Identities=20% Similarity=0.253 Sum_probs=155.2
Q ss_pred ccccceee-eccCCCccCccccchhHHHHHHHHHhCCceEEEEEeCCC--------CCccccccceEEEEEeeecCCceE
Q 011050 288 LMPLFVMD-VVIPCQRFPLHIFEPRYRLMVRRIMEGNHRMGMVIIDPT--------TGSVADFACEVEITECEPLPDGRF 358 (494)
Q Consensus 288 ~lPl~~l~-v~fP~~~~pl~i~~~~~~~~~~~~~~~~~~~~v~~~~~~--------~~~~~~iG~~~~I~~~~~~~dg~~ 358 (494)
.+|+||+. |+|||+++||+||+++|+.|+++++++++.||++++++. .+++|.|||+|+|.++.+++||++
T Consensus 3 ~lPl~PL~~vlfPg~~~pL~V~~~r~~~~v~~a~~~~~~~glv~~~~~~~~~~~~~~~dl~~vGt~a~I~~~~~lpdG~~ 82 (210)
T 1zbo_A 3 EIPLFPLSNALFPAGVLRLRVFEIRYLDMVRRCIADGSEFGVVVLEQGTEVRRPDGREVLARAGTMARIDHWEAPMPALL 82 (210)
T ss_dssp EEEEEEESSCCCTTBEEEEEECSTTTHHHHHHHHHTTCCEEEEEESSSCSSCCSSCCCCEEEEEEEEEEEEEECSSTTCE
T ss_pred EeeEEecCeeecCCCceeeEECCHHHHHHHHHHHhcCCcEEEEEeCCCcccCcccccCchhceEEEEEEEEEEeCCCceE
Confidence 48999998 999999999999999999999999999999999999642 145899999999999999999999
Q ss_pred EEEEEeccceEEee-eecCCCeeEEEEEEecCCCCCCcccHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhh
Q 011050 359 VLEIESRRRFRILR-SWDQDGYRVAEIEWVQDIHPEGVEDRADLQDLTNNAAEYARLWLRREKESARQDRRRLEKLLNVE 437 (494)
Q Consensus 359 ~v~~~g~~R~~i~~-~~~~~~~~~a~ve~l~d~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 437 (494)
.|.++|.+||+|.+ +.+.+||+.|+|++++|.+... ...+.+++.+.+++.+.++..... .+ ....+.
T Consensus 83 ~v~v~G~~R~rI~~~~~~~~~y~~a~ve~l~~~~~~~--~~~e~~al~~~l~~~~~~~~~~~~-~~--------~~~~l~ 151 (210)
T 1zbo_A 83 ELACTGTGRFRLHACTQGKYGLWTGQAEPVPDDAPLE--VPPELARSASALGRLIARLQREGV-PP--------HIMPMA 151 (210)
T ss_dssp EEEEEEEEEEEEEEEEECGGGCEEEEEEEECCCCCCC--CCGGGHHHHHHHHHHHHHHHHTTC-CT--------TTCSBC
T ss_pred EEEEEEEEEEEEEEEeecCCCcEEEEEEEcCCCCCCC--CcHHHHHHHHHHHHHHHHHHHhcc-cc--------ccccCC
Confidence 99999999999965 6678999999999998853211 124567788888887777665430 00 000111
Q ss_pred cCCCCCCCcchhHHHHHhcCCCChHHHhhhccCCCHHHHHHHHHHHHHhhhcc
Q 011050 438 VMMPPSQDPERFSFWLATLSDRRPSERLELLRIRDTRERIRRGLIFLRAEEQG 490 (494)
Q Consensus 438 ~~~~~~~~~~~l~~~ia~~l~l~~~~kq~LLe~~d~~~Rl~~l~~~L~~~~~~ 490 (494)
.+.+.+||++|+|++|++++++.++||+|||+ |+.+||++++.+|++++++
T Consensus 152 -~~~~~~dp~~lad~ia~~l~l~~~ekQ~lLe~-d~~~Rl~~l~~~L~~e~~~ 202 (210)
T 1zbo_A 152 -APFRLDDCGWVADRWAEMLSLPPADKARLLLL-PPLDRLREIDAVLAADGHA 202 (210)
T ss_dssp -SCCCTTCHHHHHHHHHHHSCCCHHHHHHHHHS-CHHHHHHHHHHHHHC----
T ss_pred -CcCCCCCHHHHHHHHHHhCCCCHHHHHHHHhC-CHHHHHHHHHHHHHHHhhh
Confidence 13467899999999999999999999999999 9999999999999998865
No 4
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.95 E-value=1e-28 Score=240.35 Aligned_cols=198 Identities=22% Similarity=0.334 Sum_probs=164.5
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHH
Q 011050 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (494)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (494)
.+..+...|+.++..|+|++|+..|++|+..+|+++.+|.++|.+|..+|+| ++|+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~-----------------------~~A~~ 59 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQP-----------------------EQALA 59 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH-----------------------HHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCH-----------------------HHHHH
Confidence 3678899999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCch-----hHHHHH---------------------
Q 011050 126 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNP-----LQASLQ--------------------- 179 (494)
Q Consensus 126 ~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~-----~~~~~~--------------------- 179 (494)
+++++++++|+++.+++.+|.+|..+|++++|+..|.++++++|+++. ++..+.
T Consensus 60 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 139 (281)
T 2c2l_A 60 DCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESEL 139 (281)
T ss_dssp HHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 999999999999999999999999999999999999999999997631 111110
Q ss_pred ----------HHHhhhhhh-----------------------------------hc-cccCCCCCCCccccccccccccc
Q 011050 180 ----------NLERTTASL-----------------------------------IG-RRIHGTPERTDDFDCTLCLKLLY 213 (494)
Q Consensus 180 ----------~~~~~~~~~-----------------------------------~~-~~~~~~~~~~~~~~C~iC~~~~~ 213 (494)
..++++... .+ ............+.|+||+++|.
T Consensus 140 ~~~l~~l~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~~~~~~~~~~~c~i~~~~~~ 219 (281)
T 2c2l_A 140 HSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKRKKRDIPDYLCGKISFELMR 219 (281)
T ss_dssp HHHHHHHHHHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTTSCCCCCSTTBCTTTCSBCS
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccCCcCcCCHhc
Confidence 001111000 00 01123345667899999999999
Q ss_pred CcEEcCCCCcccHhhHHHhccCC-CCCCCCCcccccCCCCCcccccHHHHHHHhCh
Q 011050 214 EPITTPCGHSFCRSCLFQSMDRG-NKCPLCRAVLFITPRTCAVSVTLNSIIQKNFP 268 (494)
Q Consensus 214 ~Pv~~~cgh~fc~~Cl~~~~~~~-~~CP~Cr~~~~~~~~~~~~~~~l~~~~~~~~p 268 (494)
+||+++|||+||+.||..|+..+ ..||.||.++. ...+.+|..+.++|+.|..
T Consensus 220 dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~--~~~l~~n~~l~~~i~~~~~ 273 (281)
T 2c2l_A 220 EPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLT--QEQLIPNLAMKEVIDAFIS 273 (281)
T ss_dssp SEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCC--GGGCEECHHHHHHHHHHHT
T ss_pred CCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCc--hhcCcccHHHHHHHHHHHH
Confidence 99999999999999999999854 45999999884 3578899999999988754
No 5
>2ane_A ATP-dependent protease LA; LONN119, LON protease, hydrolase; 2.03A {Escherichia coli} SCOP: b.122.1.10
Probab=99.83 E-value=2.1e-20 Score=157.61 Aligned_cols=101 Identities=20% Similarity=0.269 Sum_probs=92.9
Q ss_pred ccccceee--eccCCCccCccccchhHHHHHHHHHhCCceEEEEEeCC------CCCccccccceEEEEEeeecCCceEE
Q 011050 288 LMPLFVMD--VVIPCQRFPLHIFEPRYRLMVRRIMEGNHRMGMVIIDP------TTGSVADFACEVEITECEPLPDGRFV 359 (494)
Q Consensus 288 ~lPl~~l~--v~fP~~~~pl~i~~~~~~~~~~~~~~~~~~~~v~~~~~------~~~~~~~iG~~~~I~~~~~~~dg~~~ 359 (494)
.+|+||++ |+|||+.+||+|++++|++|+++++++++.|+++++.+ ..+++|.+||+|+|.++.+++||++.
T Consensus 17 ~lPl~PLr~~vlfPg~~~pL~V~~~r~i~~v~~a~~~~~~i~lv~~k~~~~~~p~~~dl~~vGt~a~I~~~~~lpdG~~~ 96 (125)
T 2ane_A 17 EIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHDKKIMLVAQKEASTDEPGVNDLFTVGTVASILQMLKLPDGTVK 96 (125)
T ss_dssp EEEEEEESSCCCCTTCEEEEEECCHHHHHHHHHHHTTTSEEEEEEBCTTCCSSCCGGGBCSEEEEEEEEEEEECTTSCEE
T ss_pred eEEEEEeCCeeeCCCccEEEEECCHHHHHHHHHHHhcCCEEEEEEecCCCccCCCccchhccEEEEEEEEEeeCCCCcEE
Confidence 49999996 99999999999999999999999999888999998854 22478999999999999999999999
Q ss_pred EEEEeccceEEeeeecCCCeeEEEEEEec
Q 011050 360 LEIESRRRFRILRSWDQDGYRVAEIEWVQ 388 (494)
Q Consensus 360 v~~~g~~R~~i~~~~~~~~~~~a~ve~l~ 388 (494)
|.++|.+||+|.++.+.+||+.|+|++++
T Consensus 97 ilv~G~~R~rI~~~~~~~~~~~a~V~~l~ 125 (125)
T 2ane_A 97 VLVEGLQRARISALSDNGEHFSAKAEYLE 125 (125)
T ss_dssp EEEEEEEEEEEEEEEECSSSEEEEEEEC-
T ss_pred EEEEEEEEEEEEEEEcCCCcEEEEEEECC
Confidence 99999999999999889999999999874
No 6
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.78 E-value=3.7e-19 Score=151.11 Aligned_cols=115 Identities=25% Similarity=0.433 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHH
Q 011050 44 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 123 (494)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 123 (494)
+..+..+..+|+.+++.|+|++|+..|++|++++|.++.+|.++|.+|..+|++ ++|
T Consensus 10 P~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~-----------------------~~A 66 (126)
T 4gco_A 10 PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEF-----------------------QRA 66 (126)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccH-----------------------HHH
Confidence 456889999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHH
Q 011050 124 LKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (494)
Q Consensus 124 ~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 181 (494)
+.+++++++++|+++.+|+.+|.+|..+|++++|+..|+++++++|++..++..+..+
T Consensus 67 ~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 67 LDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999998877765
No 7
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.72 E-value=4.1e-18 Score=148.70 Aligned_cols=124 Identities=19% Similarity=0.153 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCC-------Ccc-----cccChhHHHHHHHhhhccCCCCCcccccc
Q 011050 44 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPG-------DPI-----VLGNRSSAYIRISQFLKHRPPSASEYRPL 111 (494)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~-------~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 111 (494)
...+..++..|+.+++.|+|++|+..|++||+++|+ ++. +|+|+|.++.++|+|
T Consensus 8 ~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~-------------- 73 (159)
T 2hr2_A 8 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSF-------------- 73 (159)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCH--------------
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCH--------------
Confidence 456889999999999999999999999999999999 444 999999999999999
Q ss_pred CCCCCchhHHHHHHHHHHHhhc-------cccchHHH----HHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHH
Q 011050 112 NGLDPTTHAELALKDAEKLLNL-------QSNSMKSH----LLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQN 180 (494)
Q Consensus 112 ~~~~~~~~~~~a~~~~~~al~l-------~p~~~~a~----~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~ 180 (494)
++|+..+++||++ +|++.++| +++|.+|..+|++++|+.+|+++++++|+++.+...+..
T Consensus 74 ---------~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~ 144 (159)
T 2hr2_A 74 ---------DEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKER 144 (159)
T ss_dssp ---------HHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHH
T ss_pred ---------HHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 9999999999999 99999999 999999999999999999999999999999999888888
Q ss_pred HHhhhhhhhc
Q 011050 181 LERTTASLIG 190 (494)
Q Consensus 181 ~~~~~~~~~~ 190 (494)
+++.+.....
T Consensus 145 ~~~~~~~~~~ 154 (159)
T 2hr2_A 145 MMEVAIDRIA 154 (159)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8887766543
No 8
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.68 E-value=3.2e-17 Score=144.77 Aligned_cols=127 Identities=22% Similarity=0.260 Sum_probs=116.9
Q ss_pred hhhHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcc------------------CCCCcccccChhHHHHHHHhhhccCC
Q 011050 41 WDRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNI------------------KPGDPIVLGNRSSAYIRISQFLKHRP 102 (494)
Q Consensus 41 ~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~------------------~p~~~~~~~~~a~~~~~~~~~~~~~~ 102 (494)
.+....+..++..|+.+++.|+|++|+..|++|+.+ +|.+..+|.++|.||+.+|+|
T Consensus 5 ~e~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~----- 79 (162)
T 3rkv_A 5 DDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDL----- 79 (162)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCH-----
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcH-----
Confidence 355667899999999999999999999999999999 777789999999999999999
Q ss_pred CCCccccccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCc-hhHHHHHHH
Q 011050 103 PSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSN-PLQASLQNL 181 (494)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~-~~~~~~~~~ 181 (494)
.+|+.+++++++++|+++++|+++|.+|..+|++++|+.+|+++++++|++. .+...+..+
T Consensus 80 ------------------~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 80 ------------------HEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp ------------------HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred ------------------HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998 778888888
Q ss_pred Hhhhhhhhc
Q 011050 182 ERTTASLIG 190 (494)
Q Consensus 182 ~~~~~~~~~ 190 (494)
.+.+....+
T Consensus 142 ~~~~~~~~~ 150 (162)
T 3rkv_A 142 TERRAEKKA 150 (162)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHH
Confidence 888776654
No 9
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.65 E-value=1.8e-16 Score=134.46 Aligned_cols=115 Identities=18% Similarity=0.243 Sum_probs=103.1
Q ss_pred hHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHH
Q 011050 43 RYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAEL 122 (494)
Q Consensus 43 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (494)
....+..+...|+.+++.|+|++|+.+|++|++++|+++.+|.++|.+|+.+|+| ++
T Consensus 4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~-----------------------~~ 60 (127)
T 4gcn_A 4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKF-----------------------AE 60 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhH-----------------------HH
Confidence 4556788999999999999999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHhhccccch-------HHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHH
Q 011050 123 ALKDAEKLLNLQSNSM-------KSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (494)
Q Consensus 123 a~~~~~~al~l~p~~~-------~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 181 (494)
|+.+++++++++|++. .+|+++|.+|..+|++++|+..|+++++.+|+ ++....+..+
T Consensus 61 A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~l 125 (127)
T 4gcn_A 61 CVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVKEL 125 (127)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHHHh
Confidence 9999999999998764 58999999999999999999999999999885 4444444444
No 10
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.64 E-value=3e-16 Score=132.15 Aligned_cols=118 Identities=19% Similarity=0.277 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHH
Q 011050 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 124 (494)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 124 (494)
..+..+...|..++..|+|++|+..|.++++++|+++.+|.++|.+|..+|+| ++|+
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~-----------------------~~A~ 58 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSF-----------------------PEAI 58 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCH-----------------------HHHH
Confidence 35788999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCC------CCCchhHHHHHHHHhhh
Q 011050 125 KDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVD------PFSNPLQASLQNLERTT 185 (494)
Q Consensus 125 ~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~------p~~~~~~~~~~~~~~~~ 185 (494)
..++++++++|+++.+|+.+|.+|..+|++++|+..|+++++++ |++..+...+..+...+
T Consensus 59 ~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 59 ADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR 125 (126)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999 88888888887776554
No 11
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.60 E-value=2.2e-15 Score=133.09 Aligned_cols=126 Identities=25% Similarity=0.306 Sum_probs=116.8
Q ss_pred hhHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHH
Q 011050 42 DRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAE 121 (494)
Q Consensus 42 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (494)
+....+..+...|..++..|+|++|+..|.++++++|+++.+|.++|.+|+.+|+| +
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~-----------------------~ 62 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQH-----------------------E 62 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH-----------------------H
T ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCH-----------------------H
Confidence 34456889999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCch--hHHHHHHHHhhhhhhhc
Q 011050 122 LALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNP--LQASLQNLERTTASLIG 190 (494)
Q Consensus 122 ~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~--~~~~~~~~~~~~~~~~~ 190 (494)
+|+..++++++++|+++.+|+.+|.+|..+|++++|+..|+++++++|++.. +...+..+.+.+.....
T Consensus 63 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~ 133 (164)
T 3sz7_A 63 KAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEANR 133 (164)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999988 66777777777766554
No 12
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.60 E-value=1.4e-15 Score=133.10 Aligned_cols=107 Identities=12% Similarity=-0.011 Sum_probs=103.1
Q ss_pred hHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHH
Q 011050 43 RYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAEL 122 (494)
Q Consensus 43 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (494)
.+..+..+...|..+++.|+|++|+..|.+++.++|+++.+|.++|.+|..+|+| ++
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~-----------------------~~ 88 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQF-----------------------QQ 88 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccH-----------------------HH
Confidence 3456788999999999999999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCc
Q 011050 123 ALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSN 172 (494)
Q Consensus 123 a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~ 172 (494)
|+..++++++++|+++.+|+.+|.+|..+|++++|+..|+++++++|+.+
T Consensus 89 Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 89 AADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999999999999999999999999999876
No 13
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.58 E-value=4.1e-15 Score=129.62 Aligned_cols=124 Identities=8% Similarity=0.052 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHH
Q 011050 44 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 123 (494)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 123 (494)
+.....+...|..++..|+|++|+..|.+++.++|+++.+|.++|.++..+|+| ++|
T Consensus 18 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-----------------------~~A 74 (148)
T 2vgx_A 18 SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQY-----------------------DLA 74 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHH
T ss_pred HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhH-----------------------HHH
Confidence 345778889999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHhhhhhhhc
Q 011050 124 LKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASLIG 190 (494)
Q Consensus 124 ~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~ 190 (494)
+..+++++.++|+++.+++.+|.+|..+|++++|+..|+++++++|+++........+...+....+
T Consensus 75 ~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l~~ 141 (148)
T 2vgx_A 75 IHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEAIKL 141 (148)
T ss_dssp HHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999887777777776665554
No 14
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.56 E-value=5.2e-15 Score=127.61 Aligned_cols=124 Identities=11% Similarity=0.064 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHH
Q 011050 44 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 123 (494)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 123 (494)
+.....+...|..++..|+|++|+..|.+++..+|+++.+|.++|.+|..+|+| ++|
T Consensus 15 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-----------------------~~A 71 (142)
T 2xcb_A 15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLY-----------------------EQA 71 (142)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHH
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhH-----------------------HHH
Confidence 345678889999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHhhhhhhhc
Q 011050 124 LKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASLIG 190 (494)
Q Consensus 124 ~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~ 190 (494)
+..+++++.++|+++.+++.+|.+|..+|++++|+..|+++++++|+++........+...+....+
T Consensus 72 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l~~ 138 (142)
T 2xcb_A 72 LQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAVTA 138 (142)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999888877777777665543
No 15
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.56 E-value=1.3e-14 Score=132.27 Aligned_cols=146 Identities=16% Similarity=0.175 Sum_probs=124.3
Q ss_pred eccCCCccceeccCCCCCchhhHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCc----------------cccc
Q 011050 22 GIDDVDDYIWANEGEGSLPWDRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP----------------IVLG 85 (494)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~----------------~~~~ 85 (494)
......+|............+....+..+...|..++..|+|++|+..|.+++.+.|.++ .+|.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNL 92 (198)
T ss_dssp ---------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence 334445555555444444556777889999999999999999999999999999999988 8999
Q ss_pred ChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccc
Q 011050 86 NRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGL 165 (494)
Q Consensus 86 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al 165 (494)
++|.+|..+|+| ++|+..++++++++|++..+++.+|.+|..+|++++|+..|++++
T Consensus 93 ~la~~~~~~~~~-----------------------~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 149 (198)
T 2fbn_A 93 NLATCYNKNKDY-----------------------PKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAA 149 (198)
T ss_dssp HHHHHHHHTTCH-----------------------HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCH-----------------------HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 999999999999 999999999999999999999999999999999999999999999
Q ss_pred cCCCCCchhHHHHHHHHhhhhhhhc
Q 011050 166 QVDPFSNPLQASLQNLERTTASLIG 190 (494)
Q Consensus 166 ~l~p~~~~~~~~~~~~~~~~~~~~~ 190 (494)
+++|++..++..+..+...+....+
T Consensus 150 ~~~p~~~~~~~~l~~~~~~~~~~~~ 174 (198)
T 2fbn_A 150 SLNPNNLDIRNSYELCVNKLKEARK 174 (198)
T ss_dssp HHSTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHCCCcHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888888777765554
No 16
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.53 E-value=6.2e-15 Score=128.72 Aligned_cols=115 Identities=12% Similarity=0.007 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHH
Q 011050 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 124 (494)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 124 (494)
.....++..|..+++.|+|++|+.+|.++++++|+++.+|.++|.+|..+|++ ++|+
T Consensus 29 ~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~-----------------------~~A~ 85 (150)
T 4ga2_A 29 QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT-----------------------DKAV 85 (150)
T ss_dssp HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch-----------------------HHHH
Confidence 34566788999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHH-HHccccCCCCCchhHHHHHHHH
Q 011050 125 KDAEKLLNLQSNSMKSHLLKANALILLERYDMARDA-ILSGLQVDPFSNPLQASLQNLE 182 (494)
Q Consensus 125 ~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~-~~~al~l~p~~~~~~~~~~~~~ 182 (494)
..++++++++|+++.+|+.+|.+|..+|++++|... +++|++++|+++.+......+-
T Consensus 86 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll 144 (150)
T 4ga2_A 86 ECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLL 144 (150)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 999999999999999999999999999999887765 5899999999998877665553
No 17
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.51 E-value=1.1e-14 Score=113.92 Aligned_cols=74 Identities=22% Similarity=0.295 Sum_probs=64.4
Q ss_pred CCCCcccccccccccccCcEEcCCCCcccHhhHHHhccCCCCCCCCCcccccCCCCCcccccHHHHHHHhChHHHh
Q 011050 197 PERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLFITPRTCAVSVTLNSIIQKNFPEEYA 272 (494)
Q Consensus 197 ~~~~~~~~C~iC~~~~~~Pv~~~cgh~fc~~Cl~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~l~~~~~~~~p~~~~ 272 (494)
......+.|+||+++|.+||+++|||+||+.||..|+.....||.||.++.. ..+.+|..|+++++.|......
T Consensus 9 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~--~~l~pn~~L~~~i~~~~~~~~~ 82 (85)
T 2kr4_A 9 SDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTE--SMLEPVPELKEQIQAWMREKQS 82 (85)
T ss_dssp TTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCG--GGCEECHHHHHHHHHHHHHHHH
T ss_pred hcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCCh--HhcchHHHHHHHHHHHHHHhhh
Confidence 3456789999999999999999999999999999999877889999998843 5788999999999988655443
No 18
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.50 E-value=4.6e-14 Score=118.48 Aligned_cols=103 Identities=13% Similarity=0.057 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHH
Q 011050 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDA 127 (494)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 127 (494)
..++..|..+++.|++++|+..|.++++.+|+++.+|.++|.++...|++ ++|+..+
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~-----------------------~~A~~~~ 74 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKD-----------------------GLAIIAL 74 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH-----------------------HHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCH-----------------------HHHHHHH
Confidence 45688999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCch
Q 011050 128 EKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNP 173 (494)
Q Consensus 128 ~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~ 173 (494)
+++++++|+++.+++.+|.+|..+|++++|+..|+++++++|++..
T Consensus 75 ~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 75 NHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence 9999999999999999999999999999999999999999998764
No 19
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.48 E-value=6e-14 Score=145.45 Aligned_cols=126 Identities=15% Similarity=0.269 Sum_probs=113.0
Q ss_pred hhhHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCC---------------cccccChhHHHHHHHhhhccCCCCC
Q 011050 41 WDRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD---------------PIVLGNRSSAYIRISQFLKHRPPSA 105 (494)
Q Consensus 41 ~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~---------------~~~~~~~a~~~~~~~~~~~~~~~~~ 105 (494)
......+..+..+|+.+++.|+|++|+..|.+|++++|.+ ..+|.|+|.||+++++|
T Consensus 262 ~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~-------- 333 (457)
T 1kt0_A 262 KEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREY-------- 333 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCH--------
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCH--------
Confidence 3456678899999999999999999999999999999998 58999999999999999
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHhhh
Q 011050 106 SEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTT 185 (494)
Q Consensus 106 ~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~ 185 (494)
++|+..+++|++++|+++++|+++|.+|..+|++++|+.+|+++++++|++..++..+..+...+
T Consensus 334 ---------------~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~ 398 (457)
T 1kt0_A 334 ---------------TKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKA 398 (457)
T ss_dssp ---------------HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988888777666
Q ss_pred hhhh
Q 011050 186 ASLI 189 (494)
Q Consensus 186 ~~~~ 189 (494)
....
T Consensus 399 ~~~~ 402 (457)
T 1kt0_A 399 KEHN 402 (457)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 20
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.48 E-value=1.4e-14 Score=116.64 Aligned_cols=71 Identities=23% Similarity=0.303 Sum_probs=62.8
Q ss_pred CCCCcccccccccccccCcEEcCCCCcccHhhHHHhccCCCCCCCCCcccccCCCCCcccccHHHHHHHhChH
Q 011050 197 PERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLFITPRTCAVSVTLNSIIQKNFPE 269 (494)
Q Consensus 197 ~~~~~~~~C~iC~~~~~~Pv~~~cgh~fc~~Cl~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~l~~~~~~~~p~ 269 (494)
....+.+.|+||+++|.+||+++|||+||+.||..|+.....||.||.++. ..++.+|..|+++++.|...
T Consensus 24 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~--~~~L~pn~~Lk~~I~~~~~~ 94 (100)
T 2kre_A 24 SDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLT--ESMLEPVPELKEQIQAWMRE 94 (100)
T ss_dssp SSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCC--TTSSEECHHHHHHHHHHHHT
T ss_pred ccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCC--hhhceECHHHHHHHHHHHHH
Confidence 345678999999999999999999999999999999987788999999984 36889999999999887543
No 21
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.47 E-value=2.3e-14 Score=120.88 Aligned_cols=72 Identities=32% Similarity=0.669 Sum_probs=62.9
Q ss_pred cccccccccccccCcEEcCCCCcccHhhHHHhccCC-CCCCCCCcccccCCCCCcccccHHHHHHHhChHHHhh
Q 011050 201 DDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRG-NKCPLCRAVLFITPRTCAVSVTLNSIIQKNFPEEYAE 273 (494)
Q Consensus 201 ~~~~C~iC~~~~~~Pv~~~cgh~fc~~Cl~~~~~~~-~~CP~Cr~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~ 273 (494)
+.+.|+||++.+.+|++++|||+||..||..|+..+ ..||.||..+.. ...+.+|..+.+++++++|+...+
T Consensus 51 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~-~~~~~~n~~l~~~i~~~~p~~~~~ 123 (124)
T 3fl2_A 51 ETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR-SYAMQVNQPLQTVLNQLFPGYGNG 123 (124)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT-TCCCCCCHHHHHHHHHHSTTTTTT
T ss_pred cCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC-CCCCCCCHHHHHHHHHHccccccc
Confidence 568899999999999999999999999999999754 489999999853 257889999999999999986554
No 22
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.46 E-value=7.1e-14 Score=118.69 Aligned_cols=119 Identities=24% Similarity=0.380 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHH
Q 011050 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (494)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (494)
.+..+...|..++..|+|++|+..|.+++.++|+++.+|.++|.++..+|++ ++|+.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~-----------------------~~A~~ 64 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQP-----------------------EQALA 64 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCH-----------------------HHHHH
Confidence 4678899999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCC-----CchhHHHHHHHHhhhhh
Q 011050 126 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPF-----SNPLQASLQNLERTTAS 187 (494)
Q Consensus 126 ~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~-----~~~~~~~~~~~~~~~~~ 187 (494)
.++++++++|+++.+++.+|.+|..+|++++|+..|.++++++|+ +..+...+..+......
T Consensus 65 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 131 (137)
T 3q49_B 65 DCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWN 131 (137)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998 66777777666655433
No 23
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.46 E-value=7.9e-14 Score=121.34 Aligned_cols=117 Identities=17% Similarity=0.150 Sum_probs=99.4
Q ss_pred HHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhccccc
Q 011050 58 FRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNS 137 (494)
Q Consensus 58 ~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~ 137 (494)
-+.+.|++|+..|.+|++++|+++.+|.++|.++..++++.. +.+-...+++|+..+++|++++|++
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~-------------g~~al~~~~eAi~~le~AL~ldP~~ 79 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHS-------------ISDAKQMIQEAITKFEEALLIDPKK 79 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSC-------------HHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccch-------------hhhhHhHHHHHHHHHHHHHHhCcCc
Confidence 345778999999999999999999999999999999988700 0000011269999999999999999
Q ss_pred hHHHHHHHHHHHHHH-----------HHHHHHHHHHccccCCCCCchhHHHHHHHHhhhhh
Q 011050 138 MKSHLLKANALILLE-----------RYDMARDAILSGLQVDPFSNPLQASLQNLERTTAS 187 (494)
Q Consensus 138 ~~a~~~~g~~~~~~~-----------~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~ 187 (494)
..+|+.+|.+|..+| ++++|+..|++|++++|++...+.+++...++-+-
T Consensus 80 ~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~ka~el 140 (158)
T 1zu2_A 80 DEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQL 140 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhCHhc
Confidence 999999999999875 89999999999999999999999888887776543
No 24
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.46 E-value=4.9e-14 Score=108.57 Aligned_cols=70 Identities=24% Similarity=0.474 Sum_probs=60.7
Q ss_pred CCCCcccccccccccccCcEEcCCCCcccHhhHHHhccC-CCCCCCCCcccccCCCCCcccccHHHHHHHhCh
Q 011050 197 PERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDR-GNKCPLCRAVLFITPRTCAVSVTLNSIIQKNFP 268 (494)
Q Consensus 197 ~~~~~~~~C~iC~~~~~~Pv~~~cgh~fc~~Cl~~~~~~-~~~CP~Cr~~~~~~~~~~~~~~~l~~~~~~~~p 268 (494)
....+.+.|+||++.+.+|+.++|||+||+.||..|+.. ...||.||..+.. .++.+|..+.++++.|..
T Consensus 3 ~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~--~~l~~n~~l~~~i~~~~~ 73 (78)
T 1t1h_A 3 PEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH--AGLTPNYVLKSLIALWCE 73 (78)
T ss_dssp CCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS--CCCEECTTTHHHHHHHHH
T ss_pred cCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCCh--hhCccCHHHHHHHHHHHH
Confidence 345678999999999999999999999999999999986 5679999998743 577889999999987643
No 25
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.46 E-value=1e-13 Score=137.69 Aligned_cols=124 Identities=17% Similarity=0.256 Sum_probs=114.1
Q ss_pred hhhHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCC---------------cccccChhHHHHHHHhhhccCCCCC
Q 011050 41 WDRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD---------------PIVLGNRSSAYIRISQFLKHRPPSA 105 (494)
Q Consensus 41 ~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~---------------~~~~~~~a~~~~~~~~~~~~~~~~~ 105 (494)
......+..+...|+.++..|+|++|+..|.+|++++|++ ..+|.++|.+|.++|+|
T Consensus 141 ~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~-------- 212 (336)
T 1p5q_A 141 EEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAF-------- 212 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCH--------
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCH--------
Confidence 3456678899999999999999999999999999999999 59999999999999999
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHhhh
Q 011050 106 SEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTT 185 (494)
Q Consensus 106 ~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~ 185 (494)
++|+..++++++++|+++.+|+++|.+|..+|++++|+.+|+++++++|++..+...+..+...+
T Consensus 213 ---------------~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~ 277 (336)
T 1p5q_A 213 ---------------SAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRI 277 (336)
T ss_dssp ---------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998877776665554
Q ss_pred hh
Q 011050 186 AS 187 (494)
Q Consensus 186 ~~ 187 (494)
..
T Consensus 278 ~~ 279 (336)
T 1p5q_A 278 RR 279 (336)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 26
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.46 E-value=2.6e-13 Score=111.09 Aligned_cols=115 Identities=31% Similarity=0.482 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHH
Q 011050 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (494)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (494)
.+..+...|..++..|+|++|+..|.+++..+|.++.++.++|.++...|++ ++|+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-----------------------~~A~~ 59 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDY-----------------------QKAYE 59 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH-----------------------HHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccH-----------------------HHHHH
Confidence 4678899999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHh
Q 011050 126 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLER 183 (494)
Q Consensus 126 ~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~ 183 (494)
.++++++++|+++.+++.+|.++..+|++++|+..|.++++++|++..+...+..+.+
T Consensus 60 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (118)
T 1elw_A 60 DGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117 (118)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999988877766643
No 27
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.45 E-value=1.1e-13 Score=139.30 Aligned_cols=127 Identities=20% Similarity=0.264 Sum_probs=117.8
Q ss_pred hhhHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhc----------------cCCCCcccccChhHHHHHHHhhhccCCCC
Q 011050 41 WDRYTHVFDLVQKGNRAFRESNFEEAISNYSRANN----------------IKPGDPIVLGNRSSAYIRISQFLKHRPPS 104 (494)
Q Consensus 41 ~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~----------------~~p~~~~~~~~~a~~~~~~~~~~~~~~~~ 104 (494)
......+..+...|+.+++.|+|++|+..|++|++ ++|.+..+|.++|.+|+++++|
T Consensus 217 ~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~------- 289 (370)
T 1ihg_A 217 DKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDW------- 289 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCH-------
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCH-------
Confidence 45566788899999999999999999999999999 7888899999999999999999
Q ss_pred CccccccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHhh
Q 011050 105 ASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERT 184 (494)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~ 184 (494)
++|+..+++|++++|+++++|+++|.+|..+|++++|+.+|++|++++|++..++..+..+...
T Consensus 290 ----------------~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~ 353 (370)
T 1ihg_A 290 ----------------QGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQK 353 (370)
T ss_dssp ----------------HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999888888777
Q ss_pred hhhhhc
Q 011050 185 TASLIG 190 (494)
Q Consensus 185 ~~~~~~ 190 (494)
+....+
T Consensus 354 ~~~~~~ 359 (370)
T 1ihg_A 354 IKAQKD 359 (370)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 765543
No 28
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.44 E-value=1.1e-13 Score=110.96 Aligned_cols=71 Identities=20% Similarity=0.280 Sum_probs=62.7
Q ss_pred CCCCcccccccccccccCcEEcCCC-CcccHhhHHHhccCCCCCCCCCcccccCCCCCcccccHHHHHHHhChH
Q 011050 197 PERTDDFDCTLCLKLLYEPITTPCG-HSFCRSCLFQSMDRGNKCPLCRAVLFITPRTCAVSVTLNSIIQKNFPE 269 (494)
Q Consensus 197 ~~~~~~~~C~iC~~~~~~Pv~~~cg-h~fc~~Cl~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~l~~~~~~~~p~ 269 (494)
....+++.|+||+++|.+||+++|| |+||+.||..|+.....||.||.++. ...+.+|..|+++|+.|...
T Consensus 17 ~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~--~~~L~pn~~Lk~~I~~~~~~ 88 (98)
T 1wgm_A 17 ADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLT--MDQIRPNTELKEKIQRWLAE 88 (98)
T ss_dssp CSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCC--TTTSEECHHHHHHHHHHHHH
T ss_pred hcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCC--hhhceEcHHHHHHHHHHHHH
Confidence 3456789999999999999999999 99999999999988788999999885 35888999999999887543
No 29
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.43 E-value=2.2e-13 Score=114.32 Aligned_cols=119 Identities=26% Similarity=0.397 Sum_probs=110.6
Q ss_pred hhHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHH
Q 011050 42 DRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAE 121 (494)
Q Consensus 42 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (494)
........+...|..++..|+|++|+..|.++++.+|.+..++.++|.++...+++ +
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~-----------------------~ 67 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEF-----------------------Q 67 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCH-----------------------H
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccH-----------------------H
Confidence 34555789999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHh
Q 011050 122 LALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLER 183 (494)
Q Consensus 122 ~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~ 183 (494)
+|+..++++++++|++..+++.+|.+|..+|++++|+..|+++++++|++..+...+..+..
T Consensus 68 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 129 (133)
T 2lni_A 68 LALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMM 129 (133)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999887776665543
No 30
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.42 E-value=1.5e-13 Score=126.57 Aligned_cols=112 Identities=16% Similarity=0.066 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccC----------------hhHHHHHHHhhhccCCCCCccccc
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGN----------------RSSAYIRISQFLKHRPPSASEYRP 110 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~----------------~a~~~~~~~~~~~~~~~~~~~~~~ 110 (494)
+..++.+|..++..|+|++|+..|.++++.+|+++.+|+. +|.+|...|++
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~------------- 70 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNY------------- 70 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCH-------------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCH-------------
Confidence 5678899999999999999999999999999999999999 99999999999
Q ss_pred cCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHH
Q 011050 111 LNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (494)
Q Consensus 111 ~~~~~~~~~~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 181 (494)
++|+..++++++++|+++.+++.+|.+|..+|++++|+..|+++++++|++..++..+..+
T Consensus 71 ----------~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~ 131 (208)
T 3urz_A 71 ----------DKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNY 131 (208)
T ss_dssp ----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988777654
No 31
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=3.8e-13 Score=115.26 Aligned_cols=116 Identities=21% Similarity=0.366 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCC---cccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHH
Q 011050 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD---PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAE 121 (494)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (494)
..+..+...|..++..|+|++|+..|.++++.+|++ ..++.++|.+|...++| +
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~-----------------------~ 82 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDY-----------------------D 82 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCH-----------------------H
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccH-----------------------H
Confidence 457889999999999999999999999999999998 89999999999999999 9
Q ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHh
Q 011050 122 LALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLER 183 (494)
Q Consensus 122 ~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~ 183 (494)
+|+..++++++++|+++.+++.+|.+|..+|++++|+..|.++++++|++..++..+..+.+
T Consensus 83 ~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 83 KAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999998887777643
No 32
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.41 E-value=5.2e-13 Score=123.81 Aligned_cols=117 Identities=15% Similarity=0.215 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHH
Q 011050 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (494)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (494)
.+..+...|..++..|++++|+..|.++++.+|+++.++.++|.++...|++ ++|+.
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~-----------------------~~A~~ 60 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLV-----------------------NPALE 60 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCH-----------------------HHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-----------------------HHHHH
Confidence 4567889999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHH-----------HHHHHHHHHHHccccCCCCCchhHHHHHHHHhhh
Q 011050 126 DAEKLLNLQSNSMKSHLLKANALILL-----------ERYDMARDAILSGLQVDPFSNPLQASLQNLERTT 185 (494)
Q Consensus 126 ~~~~al~l~p~~~~a~~~~g~~~~~~-----------~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~ 185 (494)
.++++++++|+++.+++.+|.+|..+ |++++|+..|+++++++|++..++..+..+-..+
T Consensus 61 ~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~ 131 (217)
T 2pl2_A 61 NGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALL 131 (217)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc
Confidence 99999999999999999999999999 9999999999999999999998877665554333
No 33
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.40 E-value=9.9e-14 Score=115.39 Aligned_cols=81 Identities=35% Similarity=0.786 Sum_probs=67.8
Q ss_pred CCCcccccccccccccCcEEcCCCCcccHhhHHHhccC-CCCCCCCCccccc-----CCCCCcccccHHHHHHHhChHHH
Q 011050 198 ERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDR-GNKCPLCRAVLFI-----TPRTCAVSVTLNSIIQKNFPEEY 271 (494)
Q Consensus 198 ~~~~~~~C~iC~~~~~~Pv~~~cgh~fc~~Cl~~~~~~-~~~CP~Cr~~~~~-----~~~~~~~~~~l~~~~~~~~p~~~ 271 (494)
...+++.|+||++.+.+|+.++|||+||..||..|+.. ...||.||..+.. ...+..+|..+.+++++++|.+.
T Consensus 11 ~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~p~~~ 90 (115)
T 3l11_A 11 PSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHYPREC 90 (115)
T ss_dssp CCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHSHHHH
T ss_pred CCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHCCHHH
Confidence 44567899999999999999999999999999999976 5579999998742 11456788999999999999998
Q ss_pred hhhhhcc
Q 011050 272 AERKSEH 278 (494)
Q Consensus 272 ~~r~~~~ 278 (494)
..++.+.
T Consensus 91 ~~r~~~~ 97 (115)
T 3l11_A 91 KLRASGQ 97 (115)
T ss_dssp HHHHHC-
T ss_pred HHHHhhh
Confidence 8776543
No 34
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.39 E-value=1.7e-13 Score=136.38 Aligned_cols=122 Identities=20% Similarity=0.249 Sum_probs=98.4
Q ss_pred hhhHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCc-----------------ccccChhHHHHHHHhhhccCCC
Q 011050 41 WDRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP-----------------IVLGNRSSAYIRISQFLKHRPP 103 (494)
Q Consensus 41 ~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~-----------------~~~~~~a~~~~~~~~~~~~~~~ 103 (494)
......+..++..|+.+++.|+|++|+..|.+|+.+.|++. .+|.++|.+|.++++|
T Consensus 173 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~------ 246 (338)
T 2if4_A 173 EERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRY------ 246 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCC------
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCH------
Confidence 45677788999999999999999999999999999999877 4899999999999999
Q ss_pred CCccccccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHh
Q 011050 104 SASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLER 183 (494)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~ 183 (494)
++|+..++++++++|++.++|+++|.+|..+|++++|+.+|+++++++|++..++..+..+..
T Consensus 247 -----------------~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~ 309 (338)
T 2if4_A 247 -----------------DEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAE 309 (338)
T ss_dssp -----------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------
T ss_pred -----------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998888777754
Q ss_pred hh
Q 011050 184 TT 185 (494)
Q Consensus 184 ~~ 185 (494)
..
T Consensus 310 ~~ 311 (338)
T 2if4_A 310 QE 311 (338)
T ss_dssp --
T ss_pred HH
Confidence 43
No 35
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.39 E-value=4.4e-13 Score=146.05 Aligned_cols=113 Identities=19% Similarity=0.169 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHH
Q 011050 44 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 123 (494)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 123 (494)
+..+..+...|+.+.+.|+|++|+..|.+|++++|+++.+|.++|.+|.++|++ ++|
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~-----------------------~eA 62 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKL-----------------------QEA 62 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH-----------------------HHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-----------------------HHH
Confidence 445677777888888888888888888888888888888888888888888887 777
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHH
Q 011050 124 LKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQ 179 (494)
Q Consensus 124 ~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~ 179 (494)
+..+++|++++|+++.+|+.+|.+|..+|++++|++.|++|++++|++..++..+.
T Consensus 63 ~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg 118 (723)
T 4gyw_A 63 LMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLA 118 (723)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777776554443
No 36
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.39 E-value=1.5e-13 Score=119.41 Aligned_cols=73 Identities=32% Similarity=0.642 Sum_probs=63.6
Q ss_pred cccccccccccccCcEEcCCCCcccHhhHHHhccCCC-CCCCCCcccccCCCCCcccccHHHHHHHhChHHHhhh
Q 011050 201 DDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGN-KCPLCRAVLFITPRTCAVSVTLNSIIQKNFPEEYAER 274 (494)
Q Consensus 201 ~~~~C~iC~~~~~~Pv~~~cgh~fc~~Cl~~~~~~~~-~CP~Cr~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~r 274 (494)
+.+.|+||++.+.+|++++|||+||..||..|+..+. .||.||..+... ..+.+|..+.++++.++|+...+|
T Consensus 77 ~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~-~~l~~n~~l~~lv~~~~p~~~~~R 150 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN-YIMIPNEILQTLLDLFFPGYSKGR 150 (150)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT-CCCCBCHHHHHHHHHHSTTTTTTC
T ss_pred cCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC-CCCCCCHHHHHHHHHHhhHhhccC
Confidence 4678999999999999999999999999999998654 799999998532 378899999999999999866543
No 37
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.38 E-value=1.2e-13 Score=120.58 Aligned_cols=108 Identities=18% Similarity=0.152 Sum_probs=98.7
Q ss_pred HHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhh
Q 011050 53 KGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLN 132 (494)
Q Consensus 53 ~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~ 132 (494)
.|..+..+|++++|+..|.+++..+|+++..++++|.+|+..|+| ++|+..++++++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~-----------------------~~A~~~~~~al~ 59 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEY-----------------------DLAKKYICTYIN 59 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCH-----------------------HHHHHHHHHHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCH-----------------------HHHHHHHHHHHH
Confidence 467778889999999999999999999999999999999999999 999999999999
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHh
Q 011050 133 LQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLER 183 (494)
Q Consensus 133 l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~ 183 (494)
++|+++.+|+.+|.+|..+|++++|+..|+++++++|++..+...+..+-.
T Consensus 60 ~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 110 (150)
T 4ga2_A 60 VQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLC 110 (150)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988776665543
No 38
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.38 E-value=1e-12 Score=110.24 Aligned_cols=114 Identities=12% Similarity=0.081 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHhccCCCCc---ccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHH
Q 011050 49 DLVQKGNRAFRESNFEEAISNYSRANNIKPGDP---IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (494)
Q Consensus 49 ~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (494)
.++..|..++..|+|++|+..|.++++..|+++ .++.++|.+++..|+| ++|+.
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~-----------------------~~A~~ 60 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNF-----------------------QLAEA 60 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCH-----------------------HHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccH-----------------------HHHHH
Confidence 467789999999999999999999999999998 7999999999999999 99999
Q ss_pred HHHHHhhccccc---hHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHhhh
Q 011050 126 DAEKLLNLQSNS---MKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTT 185 (494)
Q Consensus 126 ~~~~al~l~p~~---~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~ 185 (494)
.++++++.+|++ +.+++.+|.+|..+|++++|+..|+++++.+|++..+......+....
T Consensus 61 ~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~ 123 (129)
T 2xev_A 61 QFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIR 123 (129)
T ss_dssp HHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 999999999999 899999999999999999999999999999999998877777665543
No 39
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.37 E-value=1.9e-12 Score=107.81 Aligned_cols=121 Identities=22% Similarity=0.318 Sum_probs=112.4
Q ss_pred hhHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHH
Q 011050 42 DRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAE 121 (494)
Q Consensus 42 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (494)
.....+..+...|..++..|+|++|+..|.+++..+|+++.++.++|.++...|++ .
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-----------------------~ 63 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNY-----------------------A 63 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------H
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhch-----------------------H
Confidence 44566788999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHhhh
Q 011050 122 LALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTT 185 (494)
Q Consensus 122 ~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~ 185 (494)
+|+..+++++.++|+++.+++.+|.+|..+|++++|+..|.++++++|++..+...+..+...+
T Consensus 64 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 127 (131)
T 2vyi_A 64 GAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKL 127 (131)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988877776665544
No 40
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.37 E-value=4.4e-13 Score=106.72 Aligned_cols=72 Identities=19% Similarity=0.557 Sum_probs=60.2
Q ss_pred CCCCCcccccccccccccCcEEcC-CCCcccHhhHHHhccC--CCCCCCCCcccccCCCCCcccccHHHHHHHhCh
Q 011050 196 TPERTDDFDCTLCLKLLYEPITTP-CGHSFCRSCLFQSMDR--GNKCPLCRAVLFITPRTCAVSVTLNSIIQKNFP 268 (494)
Q Consensus 196 ~~~~~~~~~C~iC~~~~~~Pv~~~-cgh~fc~~Cl~~~~~~--~~~CP~Cr~~~~~~~~~~~~~~~l~~~~~~~~p 268 (494)
.....+.+.|+||++.+.+|++++ |||+||..||..|+.. ...||.||..+. ....+.+|..+.++++.+..
T Consensus 7 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~-~~~~~~~n~~l~~~i~~~~~ 81 (92)
T 3ztg_A 7 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV-SPDALIANKFLRQAVNNFKN 81 (92)
T ss_dssp CCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC-CTTSCEECHHHHHHHHHHHH
T ss_pred cccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC-CccccCcCHHHHHHHHHHHH
Confidence 344567899999999999999999 9999999999999863 358999999863 23578899999999987644
No 41
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.37 E-value=1.9e-12 Score=113.04 Aligned_cols=118 Identities=25% Similarity=0.392 Sum_probs=109.8
Q ss_pred chhhHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchh
Q 011050 40 PWDRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTH 119 (494)
Q Consensus 40 ~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (494)
.......+..+...|..++..|+|++|+..|.+++..+|.++.++.++|.++...|+|
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~---------------------- 63 (166)
T 1a17_A 6 ADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECY---------------------- 63 (166)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH----------------------
T ss_pred hhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH----------------------
Confidence 3455677899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHH
Q 011050 120 AELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQN 180 (494)
Q Consensus 120 ~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~ 180 (494)
++|+..++++++++|+++.+++.+|.+|..+|++++|+..|.++++++|++..+...+..
T Consensus 64 -~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~ 123 (166)
T 1a17_A 64 -GYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQE 123 (166)
T ss_dssp -HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999877644433
No 42
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.36 E-value=1.9e-12 Score=107.98 Aligned_cols=119 Identities=17% Similarity=0.280 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHH
Q 011050 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (494)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (494)
.+..+...|..++..|+|++|+..|.+++..+|.++.++.++|.++...|++ ++|+.
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~-----------------------~~A~~ 59 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDY-----------------------NKCRE 59 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH-----------------------HHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccH-----------------------HHHHH
Confidence 4677889999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccc-------hHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHhhhhhh
Q 011050 126 DAEKLLNLQSNS-------MKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASL 188 (494)
Q Consensus 126 ~~~~al~l~p~~-------~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~ 188 (494)
.+++++.++|.+ ..+++.+|.+|..+|++++|+..|+++++++| +..+...+..+.+.+...
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 128 (131)
T 1elr_A 60 LCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKEQ 128 (131)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHh
Confidence 999999999987 89999999999999999999999999999999 577777777776666543
No 43
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.35 E-value=5e-13 Score=109.76 Aligned_cols=74 Identities=26% Similarity=0.597 Sum_probs=63.2
Q ss_pred CcccccccccccccCcEEc-CCCCcccHhhHHHhccCCCCCCCCCcccccCC--CCCcccccHHHHHHHhChHHHhh
Q 011050 200 TDDFDCTLCLKLLYEPITT-PCGHSFCRSCLFQSMDRGNKCPLCRAVLFITP--RTCAVSVTLNSIIQKNFPEEYAE 273 (494)
Q Consensus 200 ~~~~~C~iC~~~~~~Pv~~-~cgh~fc~~Cl~~~~~~~~~CP~Cr~~~~~~~--~~~~~~~~l~~~~~~~~p~~~~~ 273 (494)
...+.|+||++.+.+|+.+ +|||+||..||..|+..+..||.||..+.... ..+..|..+.++++++++.....
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~~~~~~ 89 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVPGLFKN 89 (108)
T ss_dssp GGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHSTTHHHH
T ss_pred CCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccccCcccccCcCHHHHHHHHHHhhhHHHH
Confidence 3678999999999999997 99999999999999998889999999875321 25678899999999999875533
No 44
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.35 E-value=2.1e-13 Score=117.21 Aligned_cols=74 Identities=27% Similarity=0.693 Sum_probs=54.0
Q ss_pred cccccccccccccCcEEcCCCCcccHhhHHHhccCCCCCCCCCcccccCCCCCcccccHHHHHHHhChHHHhhhh
Q 011050 201 DDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLFITPRTCAVSVTLNSIIQKNFPEEYAERK 275 (494)
Q Consensus 201 ~~~~C~iC~~~~~~Pv~~~cgh~fc~~Cl~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~r~ 275 (494)
.++.|+||++.+.+|++++|||+||..||..|+.....||.||.++...+.++..+..+.+++.. ++.+..+++
T Consensus 52 ~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~i~~~~~~-l~~~~~~rr 125 (138)
T 4ayc_A 52 NELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKTYSLVLDNCINKMVNN-LSSEVKERR 125 (138)
T ss_dssp HHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCEEECHHHHHHHHHHHTT-SCHHHHHHH
T ss_pred ccCCCcccCcccCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCCCCccchhHHHHHHHHH-hhHHHHHHH
Confidence 35789999999999999999999999999999998889999999874322222233333334333 455554443
No 45
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.34 E-value=9.3e-13 Score=116.51 Aligned_cols=69 Identities=22% Similarity=0.350 Sum_probs=60.8
Q ss_pred CCCCcccccccccccccCcEEcCCCCcccHhhHHHhccC-CCCCCCCCcccccCCCCCcccccHHHHHHHhC
Q 011050 197 PERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDR-GNKCPLCRAVLFITPRTCAVSVTLNSIIQKNF 267 (494)
Q Consensus 197 ~~~~~~~~C~iC~~~~~~Pv~~~cgh~fc~~Cl~~~~~~-~~~CP~Cr~~~~~~~~~~~~~~~l~~~~~~~~ 267 (494)
......+.||||+++|.+||+++|||+||+.||..|+.. +..||.||.++. ..++.+|..|.++++.|.
T Consensus 101 ~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~--~~~L~pN~~Lk~~Ie~~~ 170 (179)
T 2f42_A 101 REIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLT--QDQLIPNLAMKEVIDAFI 170 (179)
T ss_dssp CCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC--GGGCEECHHHHHHHHHHH
T ss_pred cCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCC--hhhCcchHHHHHHHHHHH
Confidence 455789999999999999999999999999999999975 456999999884 357899999999998874
No 46
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.33 E-value=7.8e-12 Score=114.98 Aligned_cols=105 Identities=20% Similarity=0.250 Sum_probs=92.8
Q ss_pred HHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhh
Q 011050 53 KGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLN 132 (494)
Q Consensus 53 ~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~ 132 (494)
.|..++..|+|++|+..|.++++++|+++.++.++|.+|...|++ ++|+..++++++
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-----------------------~~A~~~~~~al~ 116 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQE-----------------------KDALRMYEKILQ 116 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH-----------------------HHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCH-----------------------HHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999 999999999999
Q ss_pred ccccchHHHHHHHHHHHHH-----------------------------------HHHHHHHHHHHccccCCCCCchhHHH
Q 011050 133 LQSNSMKSHLLKANALILL-----------------------------------ERYDMARDAILSGLQVDPFSNPLQAS 177 (494)
Q Consensus 133 l~p~~~~a~~~~g~~~~~~-----------------------------------~~~~~A~~~~~~al~l~p~~~~~~~~ 177 (494)
++|+++.+|+.+|.+|+.. |+|++|+.+|+++++++|++. +...
T Consensus 117 ~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~-~~~~ 195 (208)
T 3urz_A 117 LEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE-AQKT 195 (208)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH-HHHH
T ss_pred cCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH-HHHH
Confidence 9999999999988887543 457889999999999999743 3444
Q ss_pred HHHH
Q 011050 178 LQNL 181 (494)
Q Consensus 178 ~~~~ 181 (494)
+..+
T Consensus 196 l~~i 199 (208)
T 3urz_A 196 LDKI 199 (208)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 47
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.33 E-value=1e-12 Score=132.79 Aligned_cols=115 Identities=10% Similarity=-0.050 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHh-hhccCCCCCccccccCCCCCchhHHH
Q 011050 44 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQ-FLKHRPPSASEYRPLNGLDPTTHAEL 122 (494)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (494)
...+..+...|..+...|++++|+..|++|+.++|++..+|.+||.++..+|+ + ++
T Consensus 94 p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~-----------------------~e 150 (382)
T 2h6f_A 94 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL-----------------------HE 150 (382)
T ss_dssp HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCH-----------------------HH
T ss_pred hhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCH-----------------------HH
Confidence 34456677777777777777777777777777777777777777777777775 7 77
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHH
Q 011050 123 ALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (494)
Q Consensus 123 a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 181 (494)
|+..++++++++|+++.+|+.+|.+|..+|++++|+..|+++++++|++..++..+..+
T Consensus 151 Al~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~ 209 (382)
T 2h6f_A 151 EMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWV 209 (382)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777665544433
No 48
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.33 E-value=1.5e-12 Score=141.81 Aligned_cols=113 Identities=13% Similarity=0.075 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHH
Q 011050 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (494)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (494)
.+..+...|..+.+.|++++|+.+|.+|++++|+++.+|.++|.+|..+|++ ++|++
T Consensus 42 ~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~-----------------------~~A~~ 98 (723)
T 4gyw_A 42 FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDV-----------------------QGALQ 98 (723)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-----------------------HHHHH
Confidence 3577889999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHH
Q 011050 126 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (494)
Q Consensus 126 ~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 181 (494)
.+++|++++|+++.+|+.+|.+|..+|++++|++.|++|++++|++..+...+..+
T Consensus 99 ~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~ 154 (723)
T 4gyw_A 99 CYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHC 154 (723)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhH
Confidence 99999999999999999999999999999999999999999999999877665443
No 49
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.32 E-value=2e-12 Score=130.63 Aligned_cols=116 Identities=9% Similarity=-0.019 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHHHhcC-hHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHH
Q 011050 46 HVFDLVQKGNRAFRESN-FEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 124 (494)
Q Consensus 46 ~~~~~~~~g~~~~~~~~-~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 124 (494)
.+..+..+|..+...|+ +++|+..|.+|++++|+++.+|++||.++..+|++ ++|+
T Consensus 130 ~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~-----------------------~eAl 186 (382)
T 2h6f_A 130 NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDP-----------------------SQEL 186 (382)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC-----------------------TTHH
T ss_pred CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCH-----------------------HHHH
Confidence 45678899999999996 99999999999999999999999999999999999 9999
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHhh
Q 011050 125 KDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERT 184 (494)
Q Consensus 125 ~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~ 184 (494)
..++++++++|+++.+|+.+|.++..+|++++|+.+|+++++++|++..++..+..+-..
T Consensus 187 ~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~ 246 (382)
T 2h6f_A 187 EFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISN 246 (382)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998887776544
No 50
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.29 E-value=6.4e-12 Score=116.38 Aligned_cols=112 Identities=17% Similarity=0.114 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHH-----------HhhhccCCCCCccccccCCC
Q 011050 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRI-----------SQFLKHRPPSASEYRPLNGL 114 (494)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~-----------~~~~~~~~~~~~~~~~~~~~ 114 (494)
.+..+...|..++..|++++|+..|.++++++|+++.++.++|.++... |++
T Consensus 38 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~----------------- 100 (217)
T 2pl2_A 38 DPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYL----------------- 100 (217)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHH-----------------
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCH-----------------
Confidence 3577889999999999999999999999999999999999999999999 999
Q ss_pred CCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHH
Q 011050 115 DPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (494)
Q Consensus 115 ~~~~~~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 181 (494)
++|+..++++++++|+++.+++.+|.+|..+|++++|+..|+++++++ ++..+...+..+
T Consensus 101 ------~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~ 160 (217)
T 2pl2_A 101 ------EQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAEL 160 (217)
T ss_dssp ------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999 877766555444
No 51
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.29 E-value=6.2e-12 Score=116.74 Aligned_cols=105 Identities=16% Similarity=0.161 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCC-CCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHH
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKP-GDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (494)
...++..|..++..|+|++|+..|.++++++| .+..+++++|.++..+|++ ++|+.
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~A~~ 63 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKY-----------------------KEAAD 63 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCH-----------------------HHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcH-----------------------HHHHH
Confidence 37889999999999999999999999999999 8999999999999999999 99999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchh
Q 011050 126 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPL 174 (494)
Q Consensus 126 ~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~ 174 (494)
.++++++++|++..+++.+|.+|..+|++++|+..|+++++++|++..+
T Consensus 64 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 112 (228)
T 4i17_A 64 YFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATI 112 (228)
T ss_dssp HHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHH
Confidence 9999999999999999999999999999999999999999999999854
No 52
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.28 E-value=7.5e-12 Score=116.14 Aligned_cols=117 Identities=11% Similarity=0.080 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCc-------ccccChhHHHHHHHhhhccCCCCCccccccCCCCCch
Q 011050 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP-------IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTT 118 (494)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~-------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (494)
....+...|..++..|+|++|+..|.++++++|+++ .+|.++|.++..+|++
T Consensus 75 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~--------------------- 133 (228)
T 4i17_A 75 LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNI--------------------- 133 (228)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCH---------------------
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccH---------------------
Confidence 456788899999999999999999999999999988 6688899999999999
Q ss_pred hHHHHHHHHHHHhhcccc--chHHHHHHHHHHHHHHHH---------------------------HHHHHHHHccccCCC
Q 011050 119 HAELALKDAEKLLNLQSN--SMKSHLLKANALILLERY---------------------------DMARDAILSGLQVDP 169 (494)
Q Consensus 119 ~~~~a~~~~~~al~l~p~--~~~a~~~~g~~~~~~~~~---------------------------~~A~~~~~~al~l~p 169 (494)
++|+..++++++++|+ ++.+++.+|.+|...|+. ++|+..|+++++++|
T Consensus 134 --~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p 211 (228)
T 4i17_A 134 --EKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSP 211 (228)
T ss_dssp --HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred --HHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 9999999999999999 999999999999999998 999999999999999
Q ss_pred CCchhHHHHHHHHhhh
Q 011050 170 FSNPLQASLQNLERTT 185 (494)
Q Consensus 170 ~~~~~~~~~~~~~~~~ 185 (494)
++..+...+..++..+
T Consensus 212 ~~~~~~~~l~~i~~~~ 227 (228)
T 4i17_A 212 NRTEIKQMQDQVKAMI 227 (228)
T ss_dssp TCHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHhh
Confidence 9999988888876543
No 53
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.27 E-value=1.9e-12 Score=104.49 Aligned_cols=64 Identities=17% Similarity=0.538 Sum_probs=57.1
Q ss_pred cccccccccccccCcEEc-CCCCcccHhhHHHhccCCCCCCCCCcccccCCCCCcccccHHHHHHHh
Q 011050 201 DDFDCTLCLKLLYEPITT-PCGHSFCRSCLFQSMDRGNKCPLCRAVLFITPRTCAVSVTLNSIIQKN 266 (494)
Q Consensus 201 ~~~~C~iC~~~~~~Pv~~-~cgh~fc~~Cl~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~l~~~~~~~ 266 (494)
..+.|+||++.+.+|+.+ +|||+||..|+..|+..+..||.||..+.. .++.+|..+.++++.+
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~--~~l~~n~~l~~~i~~~ 85 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE--PDLKNNRILDELVKSL 85 (99)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG--GGCEECHHHHHHHHHH
T ss_pred CCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh--hhCCcCHHHHHHHHHH
Confidence 467899999999999988 999999999999999988899999998743 5678899999998875
No 54
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.27 E-value=7.7e-13 Score=102.09 Aligned_cols=64 Identities=31% Similarity=0.753 Sum_probs=52.2
Q ss_pred CCCCcccccccccccccCcEEcCCCCcccHhhHHHhccC-------CCCCCCCCcccccCCCCCcccccHHHH
Q 011050 197 PERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDR-------GNKCPLCRAVLFITPRTCAVSVTLNSI 262 (494)
Q Consensus 197 ~~~~~~~~C~iC~~~~~~Pv~~~cgh~fc~~Cl~~~~~~-------~~~CP~Cr~~~~~~~~~~~~~~~l~~~ 262 (494)
....+.+.|+||++.+.+|+.++|||+||..|+..|+.. ...||.||..+.. .++.+|..+.++
T Consensus 7 ~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~--~~l~~n~~l~~l 77 (79)
T 2egp_A 7 GNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF--EHLQANQHLANI 77 (79)
T ss_dssp CCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS--SGGGTCSSSCCC
T ss_pred hhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH--hhCCcCHHHHHh
Confidence 344568899999999999999999999999999999876 4579999998743 456666665543
No 55
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.26 E-value=9.7e-13 Score=109.20 Aligned_cols=98 Identities=14% Similarity=0.068 Sum_probs=88.2
Q ss_pred HhcChHHHHHHHHHHhcc---CCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhccc
Q 011050 59 RESNFEEAISNYSRANNI---KPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQS 135 (494)
Q Consensus 59 ~~~~~~~Ai~~y~~al~~---~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p 135 (494)
..|+|++|+..|.+|+++ +|+++.++.++|.+|..+|+| ++|+..++++++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~-----------------------~~A~~~~~~al~~~p 58 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEY-----------------------RKAEAVLANGVKQFP 58 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCH-----------------------HHHHHHHHHHHHHCT
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCH-----------------------HHHHHHHHHHHHhCC
Confidence 368999999999999999 699999999999999999999 999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHH
Q 011050 136 NSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQ 179 (494)
Q Consensus 136 ~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~ 179 (494)
+++.+++.+|.+|..+|++++|+..|+++++++|+++.+.....
T Consensus 59 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 102 (117)
T 3k9i_A 59 NHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQ 102 (117)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHH
T ss_pred CchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 99999999999999999999999999999999999987654433
No 56
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.26 E-value=1.1e-11 Score=110.87 Aligned_cols=113 Identities=16% Similarity=0.233 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHH
Q 011050 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (494)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (494)
.+..+...|..++.+|+|++|+..|++|++++|+++.+|.++|.+|..+|++ ++|+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~-----------------------~~a~~ 60 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLP-----------------------NDAIE 60 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH-----------------------HHHHH
Confidence 3567889999999999999999999999999999999999999999999998 67777
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHH
Q 011050 126 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (494)
Q Consensus 126 ~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 181 (494)
.+.+++..+|++..++..+|.++...++++.|...+.++++++|++..+...+..+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~ 116 (184)
T 3vtx_A 61 SLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLV 116 (184)
T ss_dssp HHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 77777777777666666666666666666666666666666666666555444433
No 57
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.25 E-value=3.1e-12 Score=114.53 Aligned_cols=99 Identities=14% Similarity=0.051 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHH
Q 011050 50 LVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEK 129 (494)
Q Consensus 50 ~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 129 (494)
+...|..+...++++.|+..+.+++.++|++..++..+|.+|..+|++ ++|+..+++
T Consensus 76 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~-----------------------~~A~~~~~~ 132 (184)
T 3vtx_A 76 YYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEH-----------------------DKAIEAYEK 132 (184)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCc-----------------------hhHHHHHHH
Confidence 333444444444444444444444444554445555555555555555 555555555
Q ss_pred HhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCC
Q 011050 130 LLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFS 171 (494)
Q Consensus 130 al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~ 171 (494)
+++++|+++.+|+.+|.+|..+|++++|+..|++|++++|++
T Consensus 133 ~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 133 TISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHH
T ss_pred HHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccC
Confidence 555555555555555555555555555555555555554443
No 58
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.25 E-value=1.9e-11 Score=100.64 Aligned_cols=113 Identities=23% Similarity=0.346 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHH
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (494)
+..+...|..++..|++++|+..|.+++...|.+..++.++|.++...|++ ++|+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-----------------------~~A~~~ 65 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDY-----------------------DEAIEY 65 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCH-----------------------HHHHHH
Confidence 567888999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHH
Q 011050 127 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLE 182 (494)
Q Consensus 127 ~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~ 182 (494)
++++++.+|.+..+++.+|.+|...|++++|+..|+++++++|++..+...+..+.
T Consensus 66 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 66 YQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 121 (125)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988877666554
No 59
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.25 E-value=2.5e-12 Score=103.86 Aligned_cols=63 Identities=25% Similarity=0.533 Sum_probs=54.2
Q ss_pred cccccccccccccCcEE-cCCCCcccHhhHHHhccCC-CCCCCCCcccccCCCCCcccccHHHHHHH
Q 011050 201 DDFDCTLCLKLLYEPIT-TPCGHSFCRSCLFQSMDRG-NKCPLCRAVLFITPRTCAVSVTLNSIIQK 265 (494)
Q Consensus 201 ~~~~C~iC~~~~~~Pv~-~~cgh~fc~~Cl~~~~~~~-~~CP~Cr~~~~~~~~~~~~~~~l~~~~~~ 265 (494)
+.+.|+||++.+.+|+. ++|||+||..||..|+... ..||.||..+. ..++..+..+.++++.
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~--~~~l~~~~~~~~i~~~ 85 (100)
T 3lrq_A 21 EVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ--LRELVNCRWAEEVTQQ 85 (100)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCC--GGGCEECTTHHHHHHH
T ss_pred CCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCC--HHHhHhhHHHHHHHHH
Confidence 57889999999999999 9999999999999999876 68999999874 3566777777777654
No 60
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=2.2e-12 Score=102.85 Aligned_cols=66 Identities=17% Similarity=0.484 Sum_probs=56.3
Q ss_pred CcccccccccccccCcEEcC-CCCcccHhhHHHhccCC------CCCCC--CCcc-cccCCCCCcccccHHHHHHHhC
Q 011050 200 TDDFDCTLCLKLLYEPITTP-CGHSFCRSCLFQSMDRG------NKCPL--CRAV-LFITPRTCAVSVTLNSIIQKNF 267 (494)
Q Consensus 200 ~~~~~C~iC~~~~~~Pv~~~-cgh~fc~~Cl~~~~~~~------~~CP~--Cr~~-~~~~~~~~~~~~~l~~~~~~~~ 267 (494)
...+.|+||+++|.+||+++ |||+||+.||..|+..+ ..||+ |+.. +. ..++.+|..|.++|+.|.
T Consensus 5 ~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~--~~~L~pn~~L~~~I~~~~ 80 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIR--KSDLIQDEALRRAIENHN 80 (94)
T ss_dssp SSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBC--GGGEEECHHHHHHHHHHH
T ss_pred CcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccC--HhhCcCCHHHHHHHHHHH
Confidence 46799999999999999996 99999999999999743 47999 7765 53 367889999999998874
No 61
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=4.4e-12 Score=98.27 Aligned_cols=60 Identities=25% Similarity=0.582 Sum_probs=50.2
Q ss_pred CCCCcccccccccccccCcEEcCCCCcccHhhHHHhccCCCCCCCCCcccccCCCCCcccccH
Q 011050 197 PERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLFITPRTCAVSVTL 259 (494)
Q Consensus 197 ~~~~~~~~C~iC~~~~~~Pv~~~cgh~fc~~Cl~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~l 259 (494)
......+.|+||++.+.+|+.++|||+||..||..|+.....||+||..+. ..+.++..+
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~---~~~~~~~~l 69 (81)
T 2csy_A 10 EEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTG---GIFNPAKEL 69 (81)
T ss_dssp SCCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC---SCCEECHHH
T ss_pred ccCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc---ccCCcHHHH
Confidence 344567899999999999999999999999999999988889999999873 345555443
No 62
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.22 E-value=7.7e-12 Score=101.20 Aligned_cols=102 Identities=16% Similarity=0.172 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHH
Q 011050 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDA 127 (494)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 127 (494)
..+...|..++..|+|++|+..|.++++.+|.+..++.++|.++...|++ ++|+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~-----------------------~~A~~~~ 63 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERY-----------------------EEAVDCY 63 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH-----------------------HHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCH-----------------------HHHHHHH
Confidence 44567899999999999999999999999999999999999999999999 9999999
Q ss_pred HHHhhcccc--chHHHHHHHHHHHHH-HHHHHHHHHHHccccCCCCCc
Q 011050 128 EKLLNLQSN--SMKSHLLKANALILL-ERYDMARDAILSGLQVDPFSN 172 (494)
Q Consensus 128 ~~al~l~p~--~~~a~~~~g~~~~~~-~~~~~A~~~~~~al~l~p~~~ 172 (494)
+++++++|. +..+++.+|.++..+ |++++|++.+++++..+|.+.
T Consensus 64 ~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 64 NYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 999999999 999999999999999 999999999999999999764
No 63
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.22 E-value=3.5e-12 Score=132.85 Aligned_cols=115 Identities=26% Similarity=0.416 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHH
Q 011050 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 124 (494)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 124 (494)
..+..+...|..++..|+|++|+..|++|++++|+++.+|.++|.+|..+|+| ++|+
T Consensus 4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~-----------------------~~A~ 60 (477)
T 1wao_1 4 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECY-----------------------GYAL 60 (477)
T ss_dssp HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCH-----------------------HHHH
Confidence 34566778899999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHH
Q 011050 125 KDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLE 182 (494)
Q Consensus 125 ~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~ 182 (494)
..+++|++++|+++.+++.+|.+|..+|++++|++.|+++++++|++..++..+..+.
T Consensus 61 ~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~ 118 (477)
T 1wao_1 61 GDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECN 118 (477)
T ss_dssp HHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998877766653
No 64
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.20 E-value=7.8e-12 Score=101.61 Aligned_cols=96 Identities=17% Similarity=0.240 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHH
Q 011050 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (494)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (494)
.+..+...|..++..|+|++|+..|.++++++|+++.++.++|.++..+|+| ++|+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-----------------------~~A~~ 59 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEY-----------------------TQAIQ 59 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCH-----------------------HHHHH
Confidence 4678899999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccc------hHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 011050 126 DAEKLLNLQSNS------MKSHLLKANALILLERYDMARDAILSG 164 (494)
Q Consensus 126 ~~~~al~l~p~~------~~a~~~~g~~~~~~~~~~~A~~~~~~a 164 (494)
.++++++++|++ ..+++.+|.++..+|++++|+..+++.
T Consensus 60 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 60 MCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 999999999998 999999999999999888887766554
No 65
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.20 E-value=3.6e-12 Score=99.67 Aligned_cols=64 Identities=30% Similarity=0.775 Sum_probs=52.3
Q ss_pred CCCCcccccccccccccCcEEcCCCCcccHhhHHHhccC------CCCCCCCCcccccCCCCCcccccHHHH
Q 011050 197 PERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDR------GNKCPLCRAVLFITPRTCAVSVTLNSI 262 (494)
Q Consensus 197 ~~~~~~~~C~iC~~~~~~Pv~~~cgh~fc~~Cl~~~~~~------~~~CP~Cr~~~~~~~~~~~~~~~l~~~ 262 (494)
......+.|+||++.+.+|+.++|||+||..|+..|+.. ...||.||..+.. ..+.+|..+.++
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~--~~~~~n~~l~~~ 83 (85)
T 2ecw_A 14 EMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF--GNLKPNLHVANI 83 (85)
T ss_dssp CCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT--TCCEECSCCCSS
T ss_pred HhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH--HhCCcCHHHHHh
Confidence 345578899999999999999999999999999999876 5679999998743 456666665543
No 66
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.19 E-value=3.6e-11 Score=106.95 Aligned_cols=118 Identities=13% Similarity=0.191 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHH-HHHHHhhhccCCCCCccccccCCCCCchhHHHHH
Q 011050 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSA-YIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 124 (494)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 124 (494)
....+...|..++..|+|++|+..|.++++++|+++.++.++|.+ +...|++. .++|+
T Consensus 43 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~---------------------~~~A~ 101 (177)
T 2e2e_A 43 NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHM---------------------TAQTR 101 (177)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCC---------------------CHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcc---------------------hHHHH
Confidence 356788999999999999999999999999999999999999999 77888851 17999
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHhh
Q 011050 125 KDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERT 184 (494)
Q Consensus 125 ~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~ 184 (494)
..++++++++|++..+++.+|.+|..+|++++|+..|.++++++|++......+..+.+.
T Consensus 102 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~i~~~ 161 (177)
T 2e2e_A 102 AMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESINMA 161 (177)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998776666555543
No 67
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.18 E-value=8.4e-12 Score=110.63 Aligned_cols=71 Identities=28% Similarity=0.734 Sum_probs=59.6
Q ss_pred CCcccccccccccccCcEEc-CCCCcccHhhHHHhccC-CCCCCCCCcccccCCCCCcccccHHHHHHHhChHH
Q 011050 199 RTDDFDCTLCLKLLYEPITT-PCGHSFCRSCLFQSMDR-GNKCPLCRAVLFITPRTCAVSVTLNSIIQKNFPEE 270 (494)
Q Consensus 199 ~~~~~~C~iC~~~~~~Pv~~-~cgh~fc~~Cl~~~~~~-~~~CP~Cr~~~~~~~~~~~~~~~l~~~~~~~~p~~ 270 (494)
....+.|+||++.+.+|+.+ +|||+||..||..|+.. ...||.||..+.. ...+.+|..+.+++.++++..
T Consensus 51 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~-~~~l~~~~~l~~~i~~~~~~~ 123 (165)
T 2ckl_B 51 LHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS-KRSLRPDPNFDALISKIYPSR 123 (165)
T ss_dssp CHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS-GGGEEECHHHHHHHHHHC---
T ss_pred CCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC-cccCCcCHHHHHHHHHHHcch
Confidence 34678999999999999987 99999999999999986 5679999998743 256788999999999998863
No 68
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=5.4e-12 Score=98.65 Aligned_cols=64 Identities=30% Similarity=0.768 Sum_probs=52.3
Q ss_pred CCCCcccccccccccccCcEEcCCCCcccHhhHHHhccC------CCCCCCCCcccccCCCCCcccccHHHH
Q 011050 197 PERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDR------GNKCPLCRAVLFITPRTCAVSVTLNSI 262 (494)
Q Consensus 197 ~~~~~~~~C~iC~~~~~~Pv~~~cgh~fc~~Cl~~~~~~------~~~CP~Cr~~~~~~~~~~~~~~~l~~~ 262 (494)
......+.|+||++.+.+|+.++|||+||..|+..|+.. ...||.||..+.. .++.+|..+.++
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~--~~~~~n~~l~~~ 83 (85)
T 2ecv_A 14 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP--ENIRPNRHVANI 83 (85)
T ss_dssp CCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS--SSCCCSCCCCCC
T ss_pred HHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH--HhcCccHHHHHh
Confidence 345567899999999999999999999999999999875 5689999998743 456666665543
No 69
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.17 E-value=2.3e-11 Score=92.43 Aligned_cols=52 Identities=23% Similarity=0.745 Sum_probs=45.3
Q ss_pred CCCCCcccccccccccccCcEEcC-CCCcccHhhHHHhccCC--CCCCCCCcccc
Q 011050 196 TPERTDDFDCTLCLKLLYEPITTP-CGHSFCRSCLFQSMDRG--NKCPLCRAVLF 247 (494)
Q Consensus 196 ~~~~~~~~~C~iC~~~~~~Pv~~~-cgh~fc~~Cl~~~~~~~--~~CP~Cr~~~~ 247 (494)
.......+.|+||++.+.+|+.++ |||+||..||..|+... ..||+||..+.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 9 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred cccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 445567899999999999999999 99999999999999744 58999999753
No 70
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.16 E-value=1.2e-11 Score=102.86 Aligned_cols=62 Identities=27% Similarity=0.688 Sum_probs=55.4
Q ss_pred cccccccccccccCcEEc-CCCCcccHhhHHHhccCCCCCCCCCcccccCCCCCcccccHHHHHHHh
Q 011050 201 DDFDCTLCLKLLYEPITT-PCGHSFCRSCLFQSMDRGNKCPLCRAVLFITPRTCAVSVTLNSIIQKN 266 (494)
Q Consensus 201 ~~~~C~iC~~~~~~Pv~~-~cgh~fc~~Cl~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~l~~~~~~~ 266 (494)
+.+.|+||++.+.+|+++ +|||+||..||..|+. ..||.||..+. ...+.+|..+.++++.+
T Consensus 21 ~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~--~~~~~~n~~l~~l~~~~ 83 (117)
T 1jm7_B 21 KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAW--IQDLKINRQLDSMIQLC 83 (117)
T ss_dssp HTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCS--CSSCCCCHHHHHHHHHH
T ss_pred hCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCc--cccccccHHHHHHHHHH
Confidence 478899999999999999 9999999999999987 78999999873 35788999999998865
No 71
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.15 E-value=2.9e-11 Score=131.56 Aligned_cols=113 Identities=11% Similarity=-0.033 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHH
Q 011050 44 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 123 (494)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 123 (494)
...+..+...|..++..|+|++|+..|+++++.+|++..+|+++|.+|..+|+| ++|
T Consensus 430 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~-----------------------~~A 486 (681)
T 2pzi_A 430 SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDY-----------------------DSA 486 (681)
T ss_dssp TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCH-----------------------HHH
T ss_pred ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCH-----------------------HHH
Confidence 334556666666666666666666666666666666666666666666666666 666
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHH
Q 011050 124 LKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQN 180 (494)
Q Consensus 124 ~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~ 180 (494)
+..+++|++++|+++.+|+.+|.+|..+|++++ +..|+++++++|++..++..+..
T Consensus 487 ~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~ 542 (681)
T 2pzi_A 487 TKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLAR 542 (681)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHH
Confidence 666666666666666666666666666666666 66666666666655555444433
No 72
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.15 E-value=8.5e-11 Score=107.44 Aligned_cols=104 Identities=15% Similarity=0.090 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHH
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (494)
+..+...|..++..|+|++|+..|.+++.++|+++.+|.++|.+|..+|++ ++|+..
T Consensus 37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~-----------------------~~A~~~ 93 (213)
T 1hh8_A 37 SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKY-----------------------DLAIKD 93 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccH-----------------------HHHHHH
Confidence 467889999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccch----------------HHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCch
Q 011050 127 AEKLLNLQSNSM----------------KSHLLKANALILLERYDMARDAILSGLQVDPFSNP 173 (494)
Q Consensus 127 ~~~al~l~p~~~----------------~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~ 173 (494)
+++++++.|.+. .+++.+|.+|..+|++++|+..|+++++++|++..
T Consensus 94 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 156 (213)
T 1hh8_A 94 LKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH 156 (213)
T ss_dssp HHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG
T ss_pred HHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccccc
Confidence 999999777655 99999999999999999999999999999998643
No 73
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=2.5e-11 Score=91.66 Aligned_cols=52 Identities=33% Similarity=0.759 Sum_probs=46.5
Q ss_pred CCCCCcccccccccccccCcEEc-CCCCcccHhhHHHhccCCCCCCCCCcccc
Q 011050 196 TPERTDDFDCTLCLKLLYEPITT-PCGHSFCRSCLFQSMDRGNKCPLCRAVLF 247 (494)
Q Consensus 196 ~~~~~~~~~C~iC~~~~~~Pv~~-~cgh~fc~~Cl~~~~~~~~~CP~Cr~~~~ 247 (494)
.....+.+.|+||++.+.+|+.+ +|||+||..||..|+.....||.||..+.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 61 (72)
T 2djb_A 9 LSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVH 61 (72)
T ss_dssp CCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCC
T ss_pred HhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccC
Confidence 34456789999999999999997 99999999999999988889999999874
No 74
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=2.9e-11 Score=91.06 Aligned_cols=51 Identities=29% Similarity=0.729 Sum_probs=46.1
Q ss_pred CCCCcccccccccccccCcEEcCCCCcccHhhHHHhccCCCCCCCCCcccc
Q 011050 197 PERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 247 (494)
Q Consensus 197 ~~~~~~~~C~iC~~~~~~Pv~~~cgh~fc~~Cl~~~~~~~~~CP~Cr~~~~ 247 (494)
......+.|+||++.+.+|+.++|||.||..||..|+..+..||+||..+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 10 APSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIP 60 (71)
T ss_dssp CSSSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred ccCCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence 345677899999999999999999999999999999988889999999863
No 75
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.14 E-value=1.4e-10 Score=109.99 Aligned_cols=113 Identities=11% Similarity=0.100 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCC---cccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHH
Q 011050 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD---PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAEL 122 (494)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (494)
.+..++..|..+++.|+|++|+..|.++++..|++ +.+++++|.+|+.+|+| .+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~-----------------------~~ 70 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEY-----------------------LL 70 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCH-----------------------HH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcH-----------------------HH
Confidence 46788999999999999999999999999999999 88999999999999999 99
Q ss_pred HHHHHHHHhhcccc---chHHHHHHHHHHHH--------HHHHHHHHHHHHccccCCCCCchhHHHHHHH
Q 011050 123 ALKDAEKLLNLQSN---SMKSHLLKANALIL--------LERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (494)
Q Consensus 123 a~~~~~~al~l~p~---~~~a~~~~g~~~~~--------~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 181 (494)
|+..++++++++|+ ...+++.+|.+|.. +|++++|+..|+++++.+|++..+......+
T Consensus 71 A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~ 140 (261)
T 3qky_A 71 AASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKI 140 (261)
T ss_dssp HHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHH
Confidence 99999999999874 46799999999999 9999999999999999999998777665443
No 76
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.14 E-value=7.5e-12 Score=109.28 Aligned_cols=97 Identities=9% Similarity=-0.082 Sum_probs=88.6
Q ss_pred HHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHH
Q 011050 66 AISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKA 145 (494)
Q Consensus 66 Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~a~~~~g 145 (494)
+-..|.+++.++|+++.+++++|.+++..|+| ++|+..+++++.++|+++.+|+.+|
T Consensus 21 ~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~-----------------------~eA~~~~~~al~~~P~~~~~~~~lg 77 (151)
T 3gyz_A 21 SGATLKDINAIPDDMMDDIYSYAYDFYNKGRI-----------------------EEAEVFFRFLCIYDFYNVDYIMGLA 77 (151)
T ss_dssp TSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCH-----------------------HHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCH-----------------------HHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 33568888999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHhhh
Q 011050 146 NALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTT 185 (494)
Q Consensus 146 ~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~ 185 (494)
.+|..+|+|++|+..|+++++++|++..++..+..+-..+
T Consensus 78 ~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~l 117 (151)
T 3gyz_A 78 AIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRL 117 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHT
T ss_pred HHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc
Confidence 9999999999999999999999999998877665554444
No 77
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.14 E-value=1.8e-11 Score=101.15 Aligned_cols=66 Identities=27% Similarity=0.816 Sum_probs=55.2
Q ss_pred cccccccccccccCcEEcCCCCcccHhhHHHhccCC---CCCCCCCcccccCCCCCcccccHHHHHHHhCh
Q 011050 201 DDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRG---NKCPLCRAVLFITPRTCAVSVTLNSIIQKNFP 268 (494)
Q Consensus 201 ~~~~C~iC~~~~~~Pv~~~cgh~fc~~Cl~~~~~~~---~~CP~Cr~~~~~~~~~~~~~~~l~~~~~~~~p 268 (494)
..+.|+||++.+.+|+.++|||+||..||..|+... ..||.||..+. ...+..|..+.++++.+..
T Consensus 20 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~--~~~~~~~~~l~~~~~~~~~ 88 (112)
T 1jm7_A 20 KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT--KRSLQESTRFSQLVEELLK 88 (112)
T ss_dssp HHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC--TTTCBCCCSSSHHHHHHHH
T ss_pred CCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCC--HhhcCccHHHHHHHHHHHH
Confidence 467899999999999999999999999999999754 37999999874 3567777778888776543
No 78
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.13 E-value=6.8e-11 Score=110.65 Aligned_cols=113 Identities=19% Similarity=0.289 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHH
Q 011050 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 124 (494)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 124 (494)
.....+...|..++..|+|++|+..|.++++.+|.++.++.++|.++...|++ ++|+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~-----------------------~~A~ 193 (258)
T 3uq3_A 137 EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSF-----------------------PEAI 193 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCH-----------------------HHHH
Confidence 34567888999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCC------CCCchhHHHHHH
Q 011050 125 KDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVD------PFSNPLQASLQN 180 (494)
Q Consensus 125 ~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~------p~~~~~~~~~~~ 180 (494)
..++++++++|+++.+++.+|.+|..+|++++|+..|+++++++ |++..+...+..
T Consensus 194 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 194 ADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999 887777666554
No 79
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=3.9e-11 Score=88.93 Aligned_cols=51 Identities=31% Similarity=0.808 Sum_probs=44.6
Q ss_pred CCCCcccccccccccccCcEEcCCCCcccHhhHHHhcc-CCCCCCCCCcccc
Q 011050 197 PERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMD-RGNKCPLCRAVLF 247 (494)
Q Consensus 197 ~~~~~~~~C~iC~~~~~~Pv~~~cgh~fc~~Cl~~~~~-~~~~CP~Cr~~~~ 247 (494)
....+.+.|+||++.+.+|+.++|||+||..||..|+. ....||.||..+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (66)
T 2ecy_A 10 KTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIV 61 (66)
T ss_dssp CSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCC
T ss_pred hcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCC
Confidence 34456799999999999999999999999999999995 4567999999874
No 80
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.11 E-value=2.5e-10 Score=106.04 Aligned_cols=114 Identities=14% Similarity=0.149 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCc---ccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHH
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP---IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 123 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 123 (494)
+..+...|..++..|+|++|+..|.+++...|+++ .++.++|.+|+..|+| ++|
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~-----------------------~~A 60 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADL-----------------------PLA 60 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCH-----------------------HHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCH-----------------------HHH
Confidence 56788999999999999999999999999999875 6899999999999999 999
Q ss_pred HHHHHHHhhccccchH---HHHHHHHHHHH------------------HHHHHHHHHHHHccccCCCCCchhHHHHHHHH
Q 011050 124 LKDAEKLLNLQSNSMK---SHLLKANALIL------------------LERYDMARDAILSGLQVDPFSNPLQASLQNLE 182 (494)
Q Consensus 124 ~~~~~~al~l~p~~~~---a~~~~g~~~~~------------------~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~ 182 (494)
+..++++++.+|++.. +++.+|.+|.. .|++++|+..|+++++.+|++..+..+...+.
T Consensus 61 ~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~ 140 (225)
T 2yhc_A 61 QAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLV 140 (225)
T ss_dssp HHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHH
Confidence 9999999999999875 89999999876 57999999999999999999998776655443
Q ss_pred h
Q 011050 183 R 183 (494)
Q Consensus 183 ~ 183 (494)
.
T Consensus 141 ~ 141 (225)
T 2yhc_A 141 F 141 (225)
T ss_dssp H
T ss_pred H
Confidence 3
No 81
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=6.2e-11 Score=89.74 Aligned_cols=51 Identities=35% Similarity=0.858 Sum_probs=44.6
Q ss_pred CCCCcccccccccccccCcEEcCCCCcccHhhHHHhcc---CCCCCCCCCcccc
Q 011050 197 PERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMD---RGNKCPLCRAVLF 247 (494)
Q Consensus 197 ~~~~~~~~C~iC~~~~~~Pv~~~cgh~fc~~Cl~~~~~---~~~~CP~Cr~~~~ 247 (494)
......+.|+||++.+.+|+.++|||+||..||..|+. ....||.||..+.
T Consensus 15 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVR 68 (73)
T ss_dssp CCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred HhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence 34567889999999999999999999999999999996 3457999999874
No 82
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.10 E-value=2.4e-10 Score=112.15 Aligned_cols=118 Identities=14% Similarity=0.220 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHhccCCCCc----ccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHH
Q 011050 49 DLVQKGNRAFRESNFEEAISNYSRANNIKPGDP----IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 124 (494)
Q Consensus 49 ~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 124 (494)
.....|..++..|++++|+..|.++++..|+++ .++.++|.++...|++ ++|+
T Consensus 236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-----------------------~~A~ 292 (359)
T 3ieg_A 236 KLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKP-----------------------VEAI 292 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCH-----------------------HHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCH-----------------------HHHH
Confidence 345669999999999999999999999999987 4466799999999999 9999
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHhhhhhhh
Q 011050 125 KDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASLI 189 (494)
Q Consensus 125 ~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~ 189 (494)
..++++++++|+++.+++.+|.+|..+|++++|+..|+++++++|++..++..+..+...+++..
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 357 (359)
T 3ieg_A 293 RICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQSQ 357 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999998888776654
No 83
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.10 E-value=2.3e-10 Score=104.55 Aligned_cols=102 Identities=16% Similarity=0.174 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHH
Q 011050 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 124 (494)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 124 (494)
..+..+...|..++..|+|++|+..|.+++ +| ++.++.++|.+|...|++ ++|+
T Consensus 4 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~-----------------------~~A~ 57 (213)
T 1hh8_A 4 VEAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNM-----------------------TEAE 57 (213)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCH-----------------------HHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCH-----------------------HHHH
Confidence 346678899999999999999999999996 33 678999999999999999 9999
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCc
Q 011050 125 KDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSN 172 (494)
Q Consensus 125 ~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~ 172 (494)
..++++++++|+++.+++.+|.+|..+|++++|+..|++++++.|.+.
T Consensus 58 ~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~ 105 (213)
T 1hh8_A 58 KAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQ 105 (213)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCS
T ss_pred HHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcc
Confidence 999999999999999999999999999999999999999999999877
No 84
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.09 E-value=1.4e-10 Score=120.56 Aligned_cols=118 Identities=16% Similarity=0.068 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHh---------cChHHHHHHHHHHhccCCCCcccccChhHHHHHH--------HhhhccCCCCCccccc
Q 011050 48 FDLVQKGNRAFRE---------SNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRI--------SQFLKHRPPSASEYRP 110 (494)
Q Consensus 48 ~~~~~~g~~~~~~---------~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~--------~~~~~~~~~~~~~~~~ 110 (494)
..+...|..++.. |+|++|+..|.+|++++|+++.+|.++|.+|..+ |++
T Consensus 171 ~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~------------- 237 (474)
T 4abn_A 171 VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKIS------------- 237 (474)
T ss_dssp HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHH-------------
T ss_pred HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchH-------------
Confidence 5677788889998 9999999999999999999999999999999999 999
Q ss_pred cCCCCCchhHHHHHHHHHHHhhccc---cchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHhhhhh
Q 011050 111 LNGLDPTTHAELALKDAEKLLNLQS---NSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTAS 187 (494)
Q Consensus 111 ~~~~~~~~~~~~a~~~~~~al~l~p---~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~ 187 (494)
++|+..++++++++| +++.+|+.+|.+|..+|++++|+..|+++++++|++..++..+..+...+..
T Consensus 238 ----------~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~ 307 (474)
T 4abn_A 238 ----------QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSR 307 (474)
T ss_dssp ----------HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999 9999999999999999999999999999999999999887777666555544
Q ss_pred h
Q 011050 188 L 188 (494)
Q Consensus 188 ~ 188 (494)
.
T Consensus 308 ~ 308 (474)
T 4abn_A 308 L 308 (474)
T ss_dssp H
T ss_pred H
Confidence 3
No 85
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.09 E-value=2e-10 Score=108.73 Aligned_cols=109 Identities=22% Similarity=0.173 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHH
Q 011050 44 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 123 (494)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 123 (494)
...+..+...|..++..|++++|+..|.++++++|+++.+|.++|.+|...|++ ++|
T Consensus 40 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~-----------------------~~A 96 (275)
T 1xnf_A 40 DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNF-----------------------DAA 96 (275)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH-----------------------HHH
T ss_pred chhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCH-----------------------HHH
Confidence 455778899999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhH
Q 011050 124 LKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQ 175 (494)
Q Consensus 124 ~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~ 175 (494)
+..++++++++|++..+++.+|.+|..+|++++|+..|+++++++|++....
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 148 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRS 148 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHH
Confidence 9999999999999999999999999999999999999999999999987543
No 86
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.09 E-value=4.1e-11 Score=106.84 Aligned_cols=132 Identities=11% Similarity=0.062 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchh--------
Q 011050 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTH-------- 119 (494)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 119 (494)
..++..|..++..|++++|+..|.++++.+|+++.++.++|.++...|++-+ +-..++.+...+| +.
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~----A~~~~~~a~~~~p-~~~~~~~~~~ 81 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFEL----AQELLATIPLEYQ-DNSYKSLIAK 81 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHH----HHHHHTTCCGGGC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHH----HHHHHHHhhhccC-ChHHHHHHHH
Confidence 3466788888888889999999999888888888888888888888887622 2222333333333 10
Q ss_pred --------HHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCc--hhHHHHHHHHhh
Q 011050 120 --------AELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSN--PLQASLQNLERT 184 (494)
Q Consensus 120 --------~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~--~~~~~~~~~~~~ 184 (494)
...|+..++++++++|+++.+++.+|.+|...|++++|+..|+++++++|++. .++..+..+-..
T Consensus 82 ~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~ 156 (176)
T 2r5s_A 82 LELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSA 156 (176)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHH
T ss_pred HHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHH
Confidence 02368889999999999999999999999999999999999999999999864 366555544433
No 87
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.09 E-value=3.9e-11 Score=100.01 Aligned_cols=67 Identities=30% Similarity=0.725 Sum_probs=54.5
Q ss_pred CCCCcccccccccccccCcEEcCCCCcccHhhHHHhccCCC-CCCCCCcccccCCCCCcccccHHHHHHH
Q 011050 197 PERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGN-KCPLCRAVLFITPRTCAVSVTLNSIIQK 265 (494)
Q Consensus 197 ~~~~~~~~C~iC~~~~~~Pv~~~cgh~fc~~Cl~~~~~~~~-~CP~Cr~~~~~~~~~~~~~~~l~~~~~~ 265 (494)
....+.+.|+||++.+.+|+.++|||+||..||..|+..+. .||.||..+.. ..+.++..+.+.+..
T Consensus 13 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~--~~~~~~~~l~~~i~~ 80 (118)
T 3hct_A 13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE--NQLFPDNFAKREILS 80 (118)
T ss_dssp SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG--GGCEECHHHHHHHHT
T ss_pred cCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH--HhcccCHHHHHHHcc
Confidence 34567899999999999999999999999999999998654 89999998743 345566666666654
No 88
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.09 E-value=1.7e-10 Score=122.54 Aligned_cols=118 Identities=14% Similarity=0.061 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHH
Q 011050 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 124 (494)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 124 (494)
..+..+...|..++..|+|++|+..|.+|++++|+++.++.++|.+|..+|++ ++|+
T Consensus 21 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-----------------------~~A~ 77 (568)
T 2vsy_A 21 QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRH-----------------------AEAA 77 (568)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCH-----------------------HHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH-----------------------HHHH
Confidence 34678889999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHhhh
Q 011050 125 KDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTT 185 (494)
Q Consensus 125 ~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~ 185 (494)
..++++++++|++..+++.+|.+|..+|++++|++.|+++++++|++..+...+..+...+
T Consensus 78 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 138 (568)
T 2vsy_A 78 VLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRL 138 (568)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999987766555444433
No 89
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.07 E-value=5.5e-11 Score=129.34 Aligned_cols=111 Identities=6% Similarity=-0.086 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHH
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (494)
+..+...|..++..|+|++|+..|.+|++++|+++.+|.++|.+|..+|+| ++ +..
T Consensus 467 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~-----------------------~~-~~~ 522 (681)
T 2pzi_A 467 WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNT-----------------------DE-HKF 522 (681)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCC-----------------------CT-TCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCh-----------------------HH-HHH
Confidence 456788999999999999999999999999999999999999999999999 88 999
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHH
Q 011050 127 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (494)
Q Consensus 127 ~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 181 (494)
+++|++++|++..+|+.+|.+|..+|++++|+++|+++++++|++..++..+..+
T Consensus 523 ~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~ 577 (681)
T 2pzi_A 523 YQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVT 577 (681)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998887666555
No 90
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.07 E-value=9.9e-11 Score=113.34 Aligned_cols=136 Identities=12% Similarity=0.075 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhH-----
Q 011050 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHA----- 120 (494)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 120 (494)
....+...|..++..|++++|+..|.++++.+|+++.++.++|.++...|++ +.+-..++.+...+|....
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~----~~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRS----EDAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCH----HHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCH----HHHHHHHHhCchhhcchHHHHHHH
Confidence 3466789999999999999999999999999999999999999999999987 2233334444444442111
Q ss_pred ----------HHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCC--chhHHHHHHHHhhh
Q 011050 121 ----------ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFS--NPLQASLQNLERTT 185 (494)
Q Consensus 121 ----------~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~--~~~~~~~~~~~~~~ 185 (494)
.+|+..+++++.++|+++.+++.+|.+|...|++++|++.|.++++++|++ ..++..+..+-..+
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 346788899999999999999999999999999999999999999999998 66666665554444
No 91
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=1.2e-10 Score=85.33 Aligned_cols=46 Identities=39% Similarity=0.945 Sum_probs=40.6
Q ss_pred CCCCcccccccccccccCcEEcCCCCcccHhhHHHhcc---CCCCCCCC
Q 011050 197 PERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMD---RGNKCPLC 242 (494)
Q Consensus 197 ~~~~~~~~C~iC~~~~~~Pv~~~cgh~fc~~Cl~~~~~---~~~~CP~C 242 (494)
....+.+.|+||++.+.+|+.++|||+||..||..|+. ....||+|
T Consensus 15 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 34567889999999999999999999999999999997 34579998
No 92
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.05 E-value=2.1e-10 Score=91.47 Aligned_cols=93 Identities=10% Similarity=0.052 Sum_probs=85.8
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHhccCCCCcc-cccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHH
Q 011050 50 LVQKGNRAFRESNFEEAISNYSRANNIKPGDPI-VLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAE 128 (494)
Q Consensus 50 ~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 128 (494)
.+.+|..++..|+|++|+..|.++++.+|+++. ++.++|.+|..+|++ ++|+..++
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~-----------------------~~A~~~~~ 59 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDW-----------------------QKALNNYQ 59 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCH-----------------------HHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCH-----------------------HHHHHHHH
Confidence 356899999999999999999999999999999 999999999999999 99999999
Q ss_pred HHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCch
Q 011050 129 KLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNP 173 (494)
Q Consensus 129 ~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~ 173 (494)
++++++|++..++++ +.+.+|+..|.++...+|++..
T Consensus 60 ~al~~~p~~~~~~~~--------~~~~~a~~~~~~~~~~~p~~~~ 96 (99)
T 2kc7_A 60 SAIELNPDSPALQAR--------KMVMDILNFYNKDMYNQLEHHH 96 (99)
T ss_dssp HHHHHCTTSTHHHHH--------HHHHHHHHHHCCTTHHHHCCSS
T ss_pred HHHhcCCCcHHHHHH--------HHHHHHHHHHHHHhccCccccc
Confidence 999999999988754 7888999999999999988754
No 93
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.05 E-value=4.6e-10 Score=93.27 Aligned_cols=110 Identities=25% Similarity=0.324 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHH
Q 011050 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDA 127 (494)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 127 (494)
..+...|..++..|++++|+..|.++++.+|.+..++.++|.++...|++ ++|+..+
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-----------------------~~A~~~~ 58 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDY-----------------------DEAIEYY 58 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH-----------------------HHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCH-----------------------HHHHHHH
Confidence 35677899999999999999999999999999999999999999999999 9999999
Q ss_pred HHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHH
Q 011050 128 EKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQN 180 (494)
Q Consensus 128 ~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~ 180 (494)
++++..+|.+..+++.+|.++...|++++|+..+.++++.+|.+..+...+..
T Consensus 59 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 111 (136)
T 2fo7_A 59 QKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGN 111 (136)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 99999999999999999999999999999999999999999988766554443
No 94
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.05 E-value=4.4e-10 Score=110.26 Aligned_cols=112 Identities=19% Similarity=0.309 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHH
Q 011050 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (494)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (494)
++..+...|..++..|+|++|+..|.++++.+|+++.++.++|.++..+|++ ++|+.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~-----------------------~~A~~ 58 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKS-----------------------KAALP 58 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH-----------------------HHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCH-----------------------HHHHH
Confidence 3678899999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCC---CCchhHHHHHH
Q 011050 126 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDP---FSNPLQASLQN 180 (494)
Q Consensus 126 ~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p---~~~~~~~~~~~ 180 (494)
.++++++++|++..+++.+|.+|...|++++|+..|.++++++| ++..+...+..
T Consensus 59 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 116 (359)
T 3ieg_A 59 DLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVK 116 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999 77776655543
No 95
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.04 E-value=7.6e-11 Score=99.39 Aligned_cols=92 Identities=13% Similarity=0.079 Sum_probs=81.4
Q ss_pred HHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Q 011050 71 SRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALIL 150 (494)
Q Consensus 71 ~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~ 150 (494)
.++..++|+.+..+.++|.+|++.|+| ++|+..++++++++|.++.+|+.+|.+|..
T Consensus 3 ar~a~inP~~a~~~~~~G~~~~~~g~~-----------------------~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 59 (126)
T 4gco_A 3 ARLAYINPELAQEEKNKGNEYFKKGDY-----------------------PTAMRHYNEAVKRDPENAILYSNRAACLTK 59 (126)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHTTCH-----------------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHCHHHHHHHHHHHHHHHHcCCH-----------------------HHHHHHHHHHHHhCCCCHHHHHHHhhHHHh
Confidence 355678999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccccCCCCCchhHHHHHHHHhhh
Q 011050 151 LERYDMARDAILSGLQVDPFSNPLQASLQNLERTT 185 (494)
Q Consensus 151 ~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~ 185 (494)
+|++++|+.+|+++++++|++..++..+..+-..+
T Consensus 60 ~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 94 (126)
T 4gco_A 60 LMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAM 94 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred hccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC
Confidence 99999999999999999999998776665554444
No 96
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.04 E-value=5.9e-10 Score=105.65 Aligned_cols=116 Identities=18% Similarity=0.155 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHH--------hcChHHHHHHHHHHhccCCCCcccc-----------------cChhHHHHHHHhhhccC
Q 011050 47 VFDLVQKGNRAFR--------ESNFEEAISNYSRANNIKPGDPIVL-----------------GNRSSAYIRISQFLKHR 101 (494)
Q Consensus 47 ~~~~~~~g~~~~~--------~~~~~~Ai~~y~~al~~~p~~~~~~-----------------~~~a~~~~~~~~~~~~~ 101 (494)
...+...|..++. .|++++|+..|.++++..|++..+. +++|.+|+..|+|
T Consensus 89 ~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~---- 164 (261)
T 3qky_A 89 PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELY---- 164 (261)
T ss_dssp HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH----
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCH----
Confidence 4567888999999 9999999999999999999998777 8889999999999
Q ss_pred CCCCccccccCCCCCchhHHHHHHHHHHHhhcccc---chHHHHHHHHHHHHH----------HHHHHHHHHHHccccCC
Q 011050 102 PPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSN---SMKSHLLKANALILL----------ERYDMARDAILSGLQVD 168 (494)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~---~~~a~~~~g~~~~~~----------~~~~~A~~~~~~al~l~ 168 (494)
++|+..++++++..|+ ...+++.+|.+|..+ |++++|+..|+++++.+
T Consensus 165 -------------------~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 165 -------------------EAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp -------------------HHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred -------------------HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 9999999999999998 677999999999977 99999999999999999
Q ss_pred CCCchhHHHHHHHHhhh
Q 011050 169 PFSNPLQASLQNLERTT 185 (494)
Q Consensus 169 p~~~~~~~~~~~~~~~~ 185 (494)
|+++.+..+...+....
T Consensus 226 p~~~~~~~a~~~l~~~~ 242 (261)
T 3qky_A 226 PDSPLLRTAEELYTRAR 242 (261)
T ss_dssp TTCTHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHH
Confidence 99987666655544433
No 97
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.04 E-value=1.4e-10 Score=95.35 Aligned_cols=86 Identities=15% Similarity=0.070 Sum_probs=82.1
Q ss_pred HHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhccccchHHHHH
Q 011050 64 EEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLL 143 (494)
Q Consensus 64 ~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~a~~~ 143 (494)
++|+..|.++++.+|+++.++.++|.+|...|++ ++|+..++++++++|++..+|+.
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-----------------------~~A~~~~~~al~~~p~~~~~~~~ 58 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQF-----------------------DAALPHLRAALDFDPTYSVAWKW 58 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCH-----------------------HHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCH-----------------------HHHHHHHHHHHHHCCCcHHHHHH
Confidence 3588999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHccccCCCCCc
Q 011050 144 KANALILLERYDMARDAILSGLQVDPFSN 172 (494)
Q Consensus 144 ~g~~~~~~~~~~~A~~~~~~al~l~p~~~ 172 (494)
+|.+|..+|++++|+..|+++++++|.+.
T Consensus 59 la~~~~~~g~~~~A~~~~~~al~~~~~~~ 87 (115)
T 2kat_A 59 LGKTLQGQGDRAGARQAWESGLAAAQSRG 87 (115)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999998644
No 98
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.03 E-value=4.8e-10 Score=116.11 Aligned_cols=107 Identities=24% Similarity=0.333 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHH
Q 011050 44 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 123 (494)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 123 (494)
.+.+..++..|+.+++.|+|++|+..|++++..+| ++.+|.++|.++..+|++ ++|
T Consensus 3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~-----------------------~~A 58 (514)
T 2gw1_A 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDL-----------------------KKV 58 (514)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCH-----------------------HHH
T ss_pred chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhH-----------------------HHH
Confidence 45688999999999999999999999999999999 699999999999999999 999
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchh
Q 011050 124 LKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPL 174 (494)
Q Consensus 124 ~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~ 174 (494)
+..++++++++|++..+++.+|.+|..+|++++|+..|+++++++|.+...
T Consensus 59 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 109 (514)
T 2gw1_A 59 VEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDAS 109 (514)
T ss_dssp HHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGG
T ss_pred HHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccch
Confidence 999999999999999999999999999999999999999999999966543
No 99
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=1e-10 Score=92.01 Aligned_cols=52 Identities=27% Similarity=0.777 Sum_probs=45.2
Q ss_pred CCCCCcccccccccccccC----cEEcCCCCcccHhhHHHhccCC---CCCCCCCcccc
Q 011050 196 TPERTDDFDCTLCLKLLYE----PITTPCGHSFCRSCLFQSMDRG---NKCPLCRAVLF 247 (494)
Q Consensus 196 ~~~~~~~~~C~iC~~~~~~----Pv~~~cgh~fc~~Cl~~~~~~~---~~CP~Cr~~~~ 247 (494)
.......+.|+||++.+.+ |+.++|||+||..|+..|+... ..||.||..+.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 9 LDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITR 67 (88)
T ss_dssp CCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred hhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence 3445567899999999999 9999999999999999998754 68999999874
No 100
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.03 E-value=9.8e-11 Score=88.08 Aligned_cols=49 Identities=35% Similarity=0.873 Sum_probs=44.6
Q ss_pred CCcccccccccccccCc-------EEcCCCCcccHhhHHHhccCCCCCCCCCcccc
Q 011050 199 RTDDFDCTLCLKLLYEP-------ITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 247 (494)
Q Consensus 199 ~~~~~~C~iC~~~~~~P-------v~~~cgh~fc~~Cl~~~~~~~~~CP~Cr~~~~ 247 (494)
..+.+.|+||++.+.+| +.++|||+||..||..|+.....||.||..+.
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 62 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 62 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccC
Confidence 44678999999999998 88999999999999999988889999999874
No 101
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.02 E-value=2.3e-10 Score=119.57 Aligned_cols=111 Identities=26% Similarity=0.353 Sum_probs=97.5
Q ss_pred chhhHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchh
Q 011050 40 PWDRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTH 119 (494)
Q Consensus 40 ~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (494)
..+....+..+...|..+++.|+|++|+..|++++..+|+++.+|.++|.+|..+|++
T Consensus 18 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~---------------------- 75 (537)
T 3fp2_A 18 PSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDL---------------------- 75 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH----------------------
T ss_pred cchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCH----------------------
Confidence 3455667899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchh
Q 011050 120 AELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPL 174 (494)
Q Consensus 120 ~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~ 174 (494)
++|+..++++++++|+++.+++.+|.+|..+|++++|+..|+ ++.++|+....
T Consensus 76 -~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~ 128 (537)
T 3fp2_A 76 -EKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGA 128 (537)
T ss_dssp -HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC--------
T ss_pred -HHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChH
Confidence 999999999999999999999999999999999999999996 88999986643
No 102
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.02 E-value=4.2e-10 Score=117.00 Aligned_cols=114 Identities=17% Similarity=0.129 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHH---------HhhhccCCCCCccccccCCCCCch
Q 011050 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRI---------SQFLKHRPPSASEYRPLNGLDPTT 118 (494)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 118 (494)
..+...|..++..|+|++|+.+|.+|++++|+ +.++.++|.+|..+ |++
T Consensus 138 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~--------------------- 195 (474)
T 4abn_A 138 EAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHV--------------------- 195 (474)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHH---------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhH---------------------
Confidence 34455555555555555555555555555555 45555555555555 555
Q ss_pred hHHHHHHHHHHHhhccccchHHHHHHHHHHHHH--------HHHHHHHHHHHccccCCC---CCchhHHHHHHHHhhh
Q 011050 119 HAELALKDAEKLLNLQSNSMKSHLLKANALILL--------ERYDMARDAILSGLQVDP---FSNPLQASLQNLERTT 185 (494)
Q Consensus 119 ~~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~--------~~~~~A~~~~~~al~l~p---~~~~~~~~~~~~~~~~ 185 (494)
++|+..++++++++|++..+|+.+|.+|..+ |++++|+..|+++++++| ++..++..+..+...+
T Consensus 196 --~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~ 271 (474)
T 4abn_A 196 --MDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYE 271 (474)
T ss_dssp --HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHT
T ss_pred --HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999 999999999999999999 8888777665554444
No 103
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.02 E-value=1e-10 Score=83.52 Aligned_cols=47 Identities=30% Similarity=0.683 Sum_probs=40.8
Q ss_pred CCcccccccccccccCcEEcCCCCcccHhhHHHhccCCCCCCCCCccccc
Q 011050 199 RTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLFI 248 (494)
Q Consensus 199 ~~~~~~C~iC~~~~~~Pv~~~cgh~fc~~Cl~~~~~~~~~CP~Cr~~~~~ 248 (494)
..+.+.|+||++.+.+|+.++|||+||..|+.. ....||.||..+..
T Consensus 3 e~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~---~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 3 EFQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEA---SGMQCPICQAPWPL 49 (56)
T ss_dssp SCCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSS---SSSSCSSCCSSSSC
T ss_pred cccCCCceEeCCccCCeEEcCCCCcccHHHHcc---CCCCCCcCCcEeec
Confidence 346789999999999999999999999999876 24579999998753
No 104
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.01 E-value=9.7e-10 Score=96.90 Aligned_cols=111 Identities=16% Similarity=0.170 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHH
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (494)
...+...|..++..|++++|+..|.++++.+|.+..++.++|.++...|++ ++|+..
T Consensus 42 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-----------------------~~A~~~ 98 (186)
T 3as5_A 42 VDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKY-----------------------DLAVPL 98 (186)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH-----------------------HHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCH-----------------------HHHHHH
Confidence 455667777777778888888888888887777777777788888887887 788888
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHH
Q 011050 127 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQN 180 (494)
Q Consensus 127 ~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~ 180 (494)
++++++.+|.+..+++.+|.+|...|++++|+..++++++.+|++..+...+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 152 (186)
T 3as5_A 99 LIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAF 152 (186)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 888888888777788888888888888888888888888777777655544433
No 105
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.01 E-value=6.7e-10 Score=97.97 Aligned_cols=113 Identities=13% Similarity=0.159 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHH
Q 011050 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (494)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (494)
.+..+...|..++..|++++|+..|.+++..+|.+..++..+|.++...|++ ++|+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~A~~ 63 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAV-----------------------DRGTE 63 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCH-----------------------HHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCH-----------------------HHHHH
Confidence 3567888999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHH
Q 011050 126 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (494)
Q Consensus 126 ~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 181 (494)
.++++++.+|.+..+++.+|.++...|++++|+..+.++++++|.+..+...+..+
T Consensus 64 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 119 (186)
T 3as5_A 64 LLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVA 119 (186)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988766555444
No 106
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.01 E-value=4.9e-10 Score=106.08 Aligned_cols=114 Identities=16% Similarity=0.236 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHH
Q 011050 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDA 127 (494)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 127 (494)
..+...|..++..|+|++|+..|.++++.+|+++.++.++|.+|...|++ ++|+..+
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~-----------------------~~A~~~~ 60 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKY-----------------------DLAQKDI 60 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCH-----------------------HHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhH-----------------------HHHHHHH
Confidence 45677888888888888888888888888888888888888888888888 8888888
Q ss_pred HHHhhccccc----hHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHhhh
Q 011050 128 EKLLNLQSNS----MKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTT 185 (494)
Q Consensus 128 ~~al~l~p~~----~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~ 185 (494)
+++++ .|.+ ..+|+.+|.+|..+|++++|+..|+++++++|++..+...+..+-...
T Consensus 61 ~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 121 (272)
T 3u4t_A 61 ETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNK 121 (272)
T ss_dssp HHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHT
T ss_pred HHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc
Confidence 88887 3333 345788888888888888888888888888888777666555544333
No 107
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.01 E-value=1.5e-10 Score=96.24 Aligned_cols=48 Identities=35% Similarity=0.984 Sum_probs=43.7
Q ss_pred CcccccccccccccCcEEcCCCCcccHhhHHHhccC-CCCCCCCCcccc
Q 011050 200 TDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDR-GNKCPLCRAVLF 247 (494)
Q Consensus 200 ~~~~~C~iC~~~~~~Pv~~~cgh~fc~~Cl~~~~~~-~~~CP~Cr~~~~ 247 (494)
...+.|+||++.+.+|+.++|||+||..||..|+.. +..||.||..+.
T Consensus 21 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (116)
T 1rmd_A 21 VKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCF 69 (116)
T ss_dssp HHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred cCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCC
Confidence 357899999999999999999999999999999986 678999999874
No 108
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.00 E-value=1.4e-10 Score=107.40 Aligned_cols=67 Identities=18% Similarity=0.344 Sum_probs=57.9
Q ss_pred CCCcccccccccccccCcEEc-CCCCcccHhhHHHhccCC--CCCCC--CCcccccCCCCCcccccHHHHHHHh
Q 011050 198 ERTDDFDCTLCLKLLYEPITT-PCGHSFCRSCLFQSMDRG--NKCPL--CRAVLFITPRTCAVSVTLNSIIQKN 266 (494)
Q Consensus 198 ~~~~~~~C~iC~~~~~~Pv~~-~cgh~fc~~Cl~~~~~~~--~~CP~--Cr~~~~~~~~~~~~~~~l~~~~~~~ 266 (494)
.....+.||||+++|.+||+. .|||+||+.||..|+..+ ..||+ |+..+. ..++.+|..|.++++.+
T Consensus 177 ~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~--~~dL~pN~~L~~lve~~ 248 (267)
T 3htk_C 177 GGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS--MRDFVRDPIMELRCKIA 248 (267)
T ss_dssp SSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC--GGGEEECHHHHHHHHHH
T ss_pred CCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc--hhhCCcCHHHHHHHHHH
Confidence 456788999999999999985 999999999999999754 46999 999874 36889999999998764
No 109
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.00 E-value=4.8e-10 Score=103.99 Aligned_cols=113 Identities=14% Similarity=0.064 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHH
Q 011050 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (494)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (494)
....+...|..++..|++++|+..|.++++..|.+..++.++|.++...|++ ++|+.
T Consensus 90 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-----------------------~~A~~ 146 (243)
T 2q7f_A 90 AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQP-----------------------KLALP 146 (243)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCH-----------------------HHHHH
T ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccH-----------------------HHHHH
Confidence 3566777888888888888888888888888888888888888888888888 88888
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHH
Q 011050 126 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (494)
Q Consensus 126 ~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 181 (494)
.++++++++|++..+++.+|.++...|++++|+..|+++++.+|++..+...+..+
T Consensus 147 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 202 (243)
T 2q7f_A 147 YLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVT 202 (243)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888777665544433
No 110
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=1.4e-10 Score=86.63 Aligned_cols=50 Identities=34% Similarity=0.864 Sum_probs=44.7
Q ss_pred CCCCcccccccccccccCc-------EEcCCCCcccHhhHHHhccCCCCCCCCCccc
Q 011050 197 PERTDDFDCTLCLKLLYEP-------ITTPCGHSFCRSCLFQSMDRGNKCPLCRAVL 246 (494)
Q Consensus 197 ~~~~~~~~C~iC~~~~~~P-------v~~~cgh~fc~~Cl~~~~~~~~~CP~Cr~~~ 246 (494)
........|+||++.+.+| +.++|||.||..||..|+.....||+||..+
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 66 (69)
T 2ea6_A 10 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 66 (69)
T ss_dssp CCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCC
T ss_pred cCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCcc
Confidence 3445678999999999988 8899999999999999998888999999976
No 111
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.99 E-value=5.1e-10 Score=111.16 Aligned_cols=102 Identities=19% Similarity=0.159 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHH
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (494)
+..+...|..+...|++++|+..|.++++.+|+++.+|.++|.+|...|++ ++|+..
T Consensus 213 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~-----------------------~~A~~~ 269 (365)
T 4eqf_A 213 PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRS-----------------------EEAVEA 269 (365)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-----------------------HHHHHH
Confidence 456778899999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCC
Q 011050 127 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFS 171 (494)
Q Consensus 127 ~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~ 171 (494)
++++++++|+++.+++.+|.+|..+|++++|+..|+++++++|++
T Consensus 270 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 314 (365)
T 4eqf_A 270 YTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKS 314 (365)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 999999999999999999999999999999999999999998874
No 112
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=3.3e-10 Score=81.46 Aligned_cols=46 Identities=35% Similarity=0.977 Sum_probs=39.8
Q ss_pred CCCCcccccccccccccCcEEcCCCCcccHhhHHHhcc---CCCCCCCC
Q 011050 197 PERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMD---RGNKCPLC 242 (494)
Q Consensus 197 ~~~~~~~~C~iC~~~~~~Pv~~~cgh~fc~~Cl~~~~~---~~~~CP~C 242 (494)
....+.+.|+||++.+.+|+.++|||+||..||..|+. ....||+|
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 10 ENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred hccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 34556789999999999999999999999999999954 44679988
No 113
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.98 E-value=1.1e-10 Score=101.36 Aligned_cols=95 Identities=14% Similarity=0.007 Sum_probs=87.1
Q ss_pred HHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHH
Q 011050 67 ISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKAN 146 (494)
Q Consensus 67 i~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~a~~~~g~ 146 (494)
-..|.+++.++|++..+++++|.+++..|+| ++|+..+++++.++|+++.+|+.+|.
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~-----------------------~~A~~~~~~al~~~p~~~~~~~~lg~ 63 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXY-----------------------EDAHXVFQALCVLDHYDSRFFLGLGA 63 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCH-----------------------HHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHHHcCCh-----------------------HHHHHHHHHHHHcCcccHHHHHHHHH
Confidence 3468899999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHhh
Q 011050 147 ALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERT 184 (494)
Q Consensus 147 ~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~ 184 (494)
+|..+|++++|+..|+++++++|++..+...+..+-..
T Consensus 64 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 101 (148)
T 2vgx_A 64 CRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQ 101 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 99999999999999999999999999877665544333
No 114
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.97 E-value=8.4e-10 Score=109.28 Aligned_cols=116 Identities=16% Similarity=0.129 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHH
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (494)
+..+...|..++..|++++|+..|.+++.++|+++.+|.++|.++...|++ ++|+..
T Consensus 217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~-----------------------~~A~~~ 273 (368)
T 1fch_A 217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQS-----------------------EEAVAA 273 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCH-----------------------HHHHHH
Confidence 566778899999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCC-----------chhHHHHHHHHhhh
Q 011050 127 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFS-----------NPLQASLQNLERTT 185 (494)
Q Consensus 127 ~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~-----------~~~~~~~~~~~~~~ 185 (494)
++++++++|++..+++.+|.+|..+|++++|+..|+++++++|++ ..++..+..+-..+
T Consensus 274 ~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 343 (368)
T 1fch_A 274 YRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSML 343 (368)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999987 45555555444444
No 115
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.97 E-value=2.3e-09 Score=101.42 Aligned_cols=108 Identities=6% Similarity=0.029 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCccc----ccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHH
Q 011050 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIV----LGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 123 (494)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 123 (494)
..+...|..++..|+|++|+..|.++++ .|.++.. |.++|.++...|++ ++|
T Consensus 38 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~-----------------------~~A 93 (272)
T 3u4t_A 38 YIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQD-----------------------SLA 93 (272)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCH-----------------------HHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccH-----------------------HHH
Confidence 3577789999999999999999999999 6666655 88999999999999 999
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHH
Q 011050 124 LKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQ 179 (494)
Q Consensus 124 ~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~ 179 (494)
+..++++++++|++..+++.+|.+|..+|++++|+..|+++++++|++..+...+.
T Consensus 94 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~ 149 (272)
T 3u4t_A 94 IQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELG 149 (272)
T ss_dssp HHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHH
T ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987766555
No 116
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.97 E-value=2.7e-10 Score=84.06 Aligned_cols=47 Identities=36% Similarity=0.822 Sum_probs=40.8
Q ss_pred cccccccccc-cccCc----EEcCCCCcccHhhHHHhccCC-CCCCCCCcccc
Q 011050 201 DDFDCTLCLK-LLYEP----ITTPCGHSFCRSCLFQSMDRG-NKCPLCRAVLF 247 (494)
Q Consensus 201 ~~~~C~iC~~-~~~~P----v~~~cgh~fc~~Cl~~~~~~~-~~CP~Cr~~~~ 247 (494)
+++.|+||++ .+.+| +.++|||+||..|+..|+..+ ..||.||..+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 54 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR 54 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCS
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccc
Confidence 4678999999 99999 468999999999999997654 57999999874
No 117
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.96 E-value=4.3e-10 Score=79.94 Aligned_cols=47 Identities=34% Similarity=0.824 Sum_probs=41.8
Q ss_pred CcccccccccccccC---cEEcC-CCCcccHhhHHHhccCCCCCCCCCccc
Q 011050 200 TDDFDCTLCLKLLYE---PITTP-CGHSFCRSCLFQSMDRGNKCPLCRAVL 246 (494)
Q Consensus 200 ~~~~~C~iC~~~~~~---Pv~~~-cgh~fc~~Cl~~~~~~~~~CP~Cr~~~ 246 (494)
.+...|+||++.+.+ ++.++ |||.||..||..|+.....||.||..+
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~ 53 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCS
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEe
Confidence 356789999999888 77786 999999999999999888999999875
No 118
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.96 E-value=1.1e-09 Score=111.79 Aligned_cols=113 Identities=20% Similarity=0.327 Sum_probs=105.7
Q ss_pred hHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHH
Q 011050 43 RYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAEL 122 (494)
Q Consensus 43 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (494)
.+..+..+...|..++..|+|++|+..|.++++.+|+++.++.++|.+|...|++ ++
T Consensus 22 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~-----------------------~~ 78 (450)
T 2y4t_A 22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKS-----------------------KA 78 (450)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HH
T ss_pred cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCH-----------------------HH
Confidence 3456788999999999999999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCc---hhHHHH
Q 011050 123 ALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSN---PLQASL 178 (494)
Q Consensus 123 a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~---~~~~~~ 178 (494)
|+..++++++++|++..+++.+|.+|..+|++++|+..|+++++++|++. .++..+
T Consensus 79 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 137 (450)
T 2y4t_A 79 ALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQL 137 (450)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987 554443
No 119
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=98.96 E-value=9.9e-10 Score=110.13 Aligned_cols=113 Identities=19% Similarity=0.075 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHH
Q 011050 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (494)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (494)
....+...|..++..|++++|+..|.++++++|+++.+|.++|.++...|++ ++|+.
T Consensus 236 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~-----------------------~~A~~ 292 (388)
T 1w3b_A 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSV-----------------------AEAED 292 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCH-----------------------HHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH-----------------------HHHHH
Confidence 3567788899999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHH
Q 011050 126 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (494)
Q Consensus 126 ~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 181 (494)
.++++++++|+++.++..+|.++...|++++|+..|+++++++|++..+...+..+
T Consensus 293 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 348 (388)
T 1w3b_A 293 CYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASV 348 (388)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred HHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888766555443
No 120
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.96 E-value=1.2e-10 Score=99.88 Aligned_cols=50 Identities=26% Similarity=0.721 Sum_probs=44.4
Q ss_pred CCCcccccccccccccCcEEcCCCCcccHhhHHHhccCCC-CCCCCCcccc
Q 011050 198 ERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGN-KCPLCRAVLF 247 (494)
Q Consensus 198 ~~~~~~~C~iC~~~~~~Pv~~~cgh~fc~~Cl~~~~~~~~-~CP~Cr~~~~ 247 (494)
.....+.|+||++++.+|+.++|||+||+.||..|+..+. .||.||.++.
T Consensus 27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp GCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred cCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 3457899999999999999999999999999999998664 7999999763
No 121
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.96 E-value=1.6e-09 Score=105.08 Aligned_cols=112 Identities=15% Similarity=0.095 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccC---------CCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCc
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIK---------PGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPT 117 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~---------p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (494)
...+...|..++..|++++|+..|.+++... |..+.++.++|.++...|++
T Consensus 193 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-------------------- 252 (330)
T 3hym_B 193 PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY-------------------- 252 (330)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH--------------------
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH--------------------
Confidence 4556677888888888888888888888875 56667888888888888888
Q ss_pred hhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHH
Q 011050 118 THAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (494)
Q Consensus 118 ~~~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 181 (494)
++|+..++++++++|++..+++.+|.+|..+|++++|+..|+++++++|++..+...+..+
T Consensus 253 ---~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 313 (330)
T 3hym_B 253 ---AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHC 313 (330)
T ss_dssp ---HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999877776654
No 122
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.95 E-value=1e-09 Score=102.46 Aligned_cols=114 Identities=14% Similarity=0.151 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhc--------------------------cCCCCcccccChhHHHHHHHhhhcc
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANN--------------------------IKPGDPIVLGNRSSAYIRISQFLKH 100 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~--------------------------~~p~~~~~~~~~a~~~~~~~~~~~~ 100 (494)
+..+...|..+...|++++|+..|.+++. .+|.++.++.++|.++...|++
T Consensus 79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 155 (258)
T 3uq3_A 79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDW--- 155 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCH---
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCH---
Confidence 57788899999999999999999999999 7777888999999999999999
Q ss_pred CCCCCccccccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHH
Q 011050 101 RPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQN 180 (494)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~ 180 (494)
++|+..++++++++|.++.+++.+|.+|..+|++++|+..|+++++++|++..+...+..
T Consensus 156 --------------------~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~ 215 (258)
T 3uq3_A 156 --------------------PNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 215 (258)
T ss_dssp --------------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred --------------------HHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999877665554
Q ss_pred HHh
Q 011050 181 LER 183 (494)
Q Consensus 181 ~~~ 183 (494)
+-.
T Consensus 216 ~~~ 218 (258)
T 3uq3_A 216 AQI 218 (258)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 123
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.95 E-value=2.4e-10 Score=113.57 Aligned_cols=108 Identities=17% Similarity=0.119 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHH
Q 011050 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 124 (494)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 124 (494)
..+..++..|..++..|+|++|+..|.++++.+|+++.+|.++|.+|...|++ ++|+
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-----------------------~~A~ 119 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENE-----------------------QAAI 119 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCH-----------------------HHHH
Confidence 34566899999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhH
Q 011050 125 KDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQ 175 (494)
Q Consensus 125 ~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~ 175 (494)
..++++++++|++..+++.+|.+|..+|++++|+..|+++++++|++..+.
T Consensus 120 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 170 (365)
T 4eqf_A 120 VALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLV 170 (365)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHH
Confidence 999999999999999999999999999999999999999999998765543
No 124
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.95 E-value=1.7e-10 Score=84.74 Aligned_cols=47 Identities=36% Similarity=0.882 Sum_probs=42.8
Q ss_pred cccccccccccccCc-------EEcCCCCcccHhhHHHhccCCCCCCCCCcccc
Q 011050 201 DDFDCTLCLKLLYEP-------ITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 247 (494)
Q Consensus 201 ~~~~C~iC~~~~~~P-------v~~~cgh~fc~~Cl~~~~~~~~~CP~Cr~~~~ 247 (494)
+.+.|+||++.+.+| +.++|||.||..|+..|+.....||.||..+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 55 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 55 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCC
Confidence 467899999999987 78999999999999999988889999999874
No 125
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=98.95 E-value=2e-09 Score=107.97 Aligned_cols=114 Identities=23% Similarity=0.277 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHH
Q 011050 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (494)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (494)
....+...|..+...|++++|+..|.+++.++|+++.++.++|.+|...|++ ++|+.
T Consensus 202 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~-----------------------~~A~~ 258 (388)
T 1w3b_A 202 FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLI-----------------------DLAID 258 (388)
T ss_dssp CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCH-----------------------HHHHH
Confidence 4567888999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHH
Q 011050 126 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLE 182 (494)
Q Consensus 126 ~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~ 182 (494)
.++++++++|+++.+++.+|.+|...|++++|+..|+++++++|++..+...+..+.
T Consensus 259 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 259 TYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999987766554443
No 126
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.94 E-value=6.9e-10 Score=85.07 Aligned_cols=51 Identities=25% Similarity=0.648 Sum_probs=44.1
Q ss_pred CCCCcccccccccccccCc---EEcCCCCcccHhhHHHhccCCCCCCCCCcccc
Q 011050 197 PERTDDFDCTLCLKLLYEP---ITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 247 (494)
Q Consensus 197 ~~~~~~~~C~iC~~~~~~P---v~~~cgh~fc~~Cl~~~~~~~~~CP~Cr~~~~ 247 (494)
........|+||++.+.++ +.++|||.||..||..|+.....||+||..+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 63 (78)
T 2ect_A 10 EHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLT 63 (78)
T ss_dssp TTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCC
T ss_pred ccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccC
Confidence 3455678999999999876 45699999999999999988889999999874
No 127
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.94 E-value=5.3e-10 Score=83.52 Aligned_cols=50 Identities=34% Similarity=0.721 Sum_probs=42.8
Q ss_pred CCCccccccccccccc---CcEEcCCCCcccHhhHHHhccCCCCCCCCCcccc
Q 011050 198 ERTDDFDCTLCLKLLY---EPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 247 (494)
Q Consensus 198 ~~~~~~~C~iC~~~~~---~Pv~~~cgh~fc~~Cl~~~~~~~~~CP~Cr~~~~ 247 (494)
.......|+||++.+. .++.++|||.||..||..|+.....||+||..+.
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 62 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIE 62 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSC
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCcccc
Confidence 4456788999999885 4567899999999999999988889999999874
No 128
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.94 E-value=3.1e-09 Score=98.62 Aligned_cols=122 Identities=15% Similarity=0.108 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcc---cccChhHHHHHHHhhhccCCCCCccccccCCCC----Cchh
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPI---VLGNRSSAYIRISQFLKHRPPSASEYRPLNGLD----PTTH 119 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 119 (494)
...+...|..+++.|+|++|+..|.++++..|+++. +++.+|.++..++.. ....++.+. ....
T Consensus 41 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~---------~~~~~~~~~~~~~~~~~ 111 (225)
T 2yhc_A 41 QQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDS---------ALQGFFGVDRSDRDPQQ 111 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC-----------------------CCHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhh---------hhhhhhccchhhcCcHH
Confidence 457888999999999999999999999999999875 789999999875421 000000011 1223
Q ss_pred HHHHHHHHHHHhhccccchHHH-----------------HHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHH
Q 011050 120 AELALKDAEKLLNLQSNSMKSH-----------------LLKANALILLERYDMARDAILSGLQVDPFSNPLQAS 177 (494)
Q Consensus 120 ~~~a~~~~~~al~l~p~~~~a~-----------------~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~ 177 (494)
.++|+..++++++.+|++..++ +.+|.+|...|++++|+..|+++++..|+++....+
T Consensus 112 ~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 186 (225)
T 2yhc_A 112 ARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDA 186 (225)
T ss_dssp HHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHH
T ss_pred HHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHH
Confidence 3999999999999999987665 678999999999999999999999999998754333
No 129
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.94 E-value=1.1e-09 Score=90.92 Aligned_cols=102 Identities=25% Similarity=0.347 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHH
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (494)
...+...|..++..|++++|+..|.+++...|.+..++.++|.++...|++ ++|+..
T Consensus 35 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----------------------~~A~~~ 91 (136)
T 2fo7_A 35 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDY-----------------------DEAIEY 91 (136)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH-----------------------HHHHHH
T ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCH-----------------------HHHHHH
Confidence 455677899999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCC
Q 011050 127 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFS 171 (494)
Q Consensus 127 ~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~ 171 (494)
+++++..+|.+..+++.+|.++...|++++|+..+.++++++|++
T Consensus 92 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 92 YQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 999999999999999999999999999999999999999988863
No 130
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.94 E-value=1.9e-09 Score=99.95 Aligned_cols=112 Identities=13% Similarity=0.135 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHH
Q 011050 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (494)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (494)
....+...|..++..|++++|+..|.++++.+|.+..++.++|.++...|++ ++|+.
T Consensus 56 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-----------------------~~A~~ 112 (243)
T 2q7f_A 56 DAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMY-----------------------KEAKD 112 (243)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccH-----------------------HHHHH
Confidence 4678889999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHH
Q 011050 126 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQN 180 (494)
Q Consensus 126 ~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~ 180 (494)
.++++++.+|.+..+++.+|.+|...|++++|+..++++++++|++..+...+..
T Consensus 113 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 167 (243)
T 2q7f_A 113 MFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGM 167 (243)
T ss_dssp HHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998876655443
No 131
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.93 E-value=2.1e-09 Score=109.63 Aligned_cols=116 Identities=14% Similarity=0.229 Sum_probs=107.2
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHhccCCCCc----ccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHH
Q 011050 50 LVQKGNRAFRESNFEEAISNYSRANNIKPGDP----IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (494)
Q Consensus 50 ~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (494)
....|..++..|++++|+..|.++++..|+++ .+|.++|.++...|++ ++|+.
T Consensus 260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~-----------------------~~A~~ 316 (450)
T 2y4t_A 260 LIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKP-----------------------VEAIR 316 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCH-----------------------HHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCH-----------------------HHHHH
Confidence 45569999999999999999999999999985 4889999999999999 99999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHhhhhhh
Q 011050 126 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASL 188 (494)
Q Consensus 126 ~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~ 188 (494)
.++++++++|+++.+|+.+|.+|...|++++|+..|+++++++|++..+...+..+...+...
T Consensus 317 ~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 379 (450)
T 2y4t_A 317 VCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQS 379 (450)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999999999999988888877666553
No 132
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.93 E-value=3.9e-10 Score=80.12 Aligned_cols=46 Identities=30% Similarity=0.792 Sum_probs=41.4
Q ss_pred cccccccccccccC----cEEcCCCCcccHhhHHHhccCCCCCCCCCccc
Q 011050 201 DDFDCTLCLKLLYE----PITTPCGHSFCRSCLFQSMDRGNKCPLCRAVL 246 (494)
Q Consensus 201 ~~~~C~iC~~~~~~----Pv~~~cgh~fc~~Cl~~~~~~~~~CP~Cr~~~ 246 (494)
....|+||++.+.+ ++.++|||.||..|+..|+.....||+||..+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 53 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPS 53 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSS
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcC
Confidence 56789999999866 67889999999999999998888999999876
No 133
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.92 E-value=3.3e-10 Score=84.40 Aligned_cols=47 Identities=28% Similarity=0.707 Sum_probs=42.3
Q ss_pred cccccccccccccCc-EEcCCCCcccHhhHHHhccCCCCCCCCCcccc
Q 011050 201 DDFDCTLCLKLLYEP-ITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 247 (494)
Q Consensus 201 ~~~~C~iC~~~~~~P-v~~~cgh~fc~~Cl~~~~~~~~~CP~Cr~~~~ 247 (494)
....|+||++.+.+| +.++|||.||..|+..|+..+..||.||..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 456899999999997 67899999999999999988889999999873
No 134
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.92 E-value=2.1e-09 Score=98.09 Aligned_cols=111 Identities=13% Similarity=0.021 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHH
Q 011050 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 124 (494)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 124 (494)
..+..+...|..++..|++++|+..|.++++.+|+++.++..+|.++...|++ ++|+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----------------------~~A~ 62 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVN-----------------------DKAQ 62 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCh-----------------------HHHH
Confidence 45678889999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHHH-HHHHHHHHHHHcccc--CCCCCchhHHHH
Q 011050 125 KDAEKLLNLQSNSMKSHLLKANALILL-ERYDMARDAILSGLQ--VDPFSNPLQASL 178 (494)
Q Consensus 125 ~~~~~al~l~p~~~~a~~~~g~~~~~~-~~~~~A~~~~~~al~--l~p~~~~~~~~~ 178 (494)
..++++++++|++..+++.+|.+|... |++++|+..|+++++ .+|.+..+...+
T Consensus 63 ~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l 119 (225)
T 2vq2_A 63 ESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNK 119 (225)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHH
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHH
Confidence 999999999999999999999999999 999999999999999 444444444333
No 135
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.92 E-value=2.4e-09 Score=83.34 Aligned_cols=85 Identities=21% Similarity=0.315 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHH
Q 011050 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 124 (494)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 124 (494)
..+..+...|..++..|+|++|+..|.++++.+|+++.++.++|.++...|++ ++|+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~-----------------------~~A~ 63 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDY-----------------------DEAI 63 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhH-----------------------HHHH
Confidence 34677889999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHHHH
Q 011050 125 KDAEKLLNLQSNSMKSHLLKANALILLE 152 (494)
Q Consensus 125 ~~~~~al~l~p~~~~a~~~~g~~~~~~~ 152 (494)
..++++++++|++..+++.+|.++..+|
T Consensus 64 ~~~~~a~~~~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 64 EYYQKALELDPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999987654
No 136
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.92 E-value=1.9e-09 Score=100.83 Aligned_cols=113 Identities=19% Similarity=0.119 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHH
Q 011050 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 124 (494)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 124 (494)
..+..+...|..++..|++++|+..|.++++.+|.+..++..+|.+|...|++ ++|+
T Consensus 35 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~-----------------------~~A~ 91 (252)
T 2ho1_A 35 EARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEP-----------------------KLAD 91 (252)
T ss_dssp HHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCH-----------------------HHHH
Confidence 34788899999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHcccc--CCCCCchhHHHHHH
Q 011050 125 KDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQ--VDPFSNPLQASLQN 180 (494)
Q Consensus 125 ~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~p~~~~~~~~~~~ 180 (494)
..++++++++|.+..+++.+|.+|...|++++|+..|+++++ .+|.+..+...+..
T Consensus 92 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~ 149 (252)
T 2ho1_A 92 EEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGL 149 (252)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHH
Confidence 999999999999999999999999999999999999999999 66766655544433
No 137
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.91 E-value=3.6e-09 Score=102.65 Aligned_cols=111 Identities=12% Similarity=0.001 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHhc-ChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHH
Q 011050 47 VFDLVQKGNRAFRES-NFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~-~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (494)
...+...|..++..| ++++|+..|.++++.+|+++.+|.++|.++...|++ ++|+.
T Consensus 90 ~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~-----------------------~~A~~ 146 (330)
T 3hym_B 90 PVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEH-----------------------DQAMA 146 (330)
T ss_dssp THHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCH-----------------------HHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCH-----------------------HHHHH
Confidence 345667777788888 788888888888888888888888888888888888 88888
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHH
Q 011050 126 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQN 180 (494)
Q Consensus 126 ~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~ 180 (494)
.++++++++|++..+++.+|.+|...|++++|+..|+++++++|++..+...+..
T Consensus 147 ~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~ 201 (330)
T 3hym_B 147 AYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGV 201 (330)
T ss_dssp HHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 8888888888888888888888888888888888888888888887765554443
No 138
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.91 E-value=2e-09 Score=106.59 Aligned_cols=107 Identities=15% Similarity=0.103 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHH
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (494)
+..+...|..++..|+|++|+..|.++++.+|+++.++.++|.++...|++ ++|+..
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~-----------------------~~A~~~ 120 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQE-----------------------LLAISA 120 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCH-----------------------HHHHHH
Confidence 556788999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHH
Q 011050 127 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQA 176 (494)
Q Consensus 127 ~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~ 176 (494)
++++++++|++..+++.+|.+|..+|++++|+..|.++++++|.+.....
T Consensus 121 ~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 170 (368)
T 1fch_A 121 LRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVT 170 (368)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHH
Confidence 99999999999999999999999999999999999999999998876543
No 139
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=5.8e-10 Score=83.55 Aligned_cols=49 Identities=35% Similarity=0.892 Sum_probs=44.2
Q ss_pred CCCcccccccccccccCcEEcCCCCcccHhhHHHhccCCCCCCCCCcccc
Q 011050 198 ERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 247 (494)
Q Consensus 198 ~~~~~~~C~iC~~~~~~Pv~~~cgh~fc~~Cl~~~~~~~~~CP~Cr~~~~ 247 (494)
.......|+||++.+.+ +.++|||.||..|+..|+.....||.||..+.
T Consensus 11 ~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 59 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDRHRNCPICRLQMT 59 (70)
T ss_dssp CCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCCCSSCHHHHHCTT
T ss_pred cCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHCcCcCCCcCCccc
Confidence 44567899999999999 88999999999999999998889999999874
No 140
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.91 E-value=1.8e-10 Score=102.39 Aligned_cols=108 Identities=12% Similarity=0.039 Sum_probs=94.1
Q ss_pred HHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhh
Q 011050 53 KGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLN 132 (494)
Q Consensus 53 ~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~ 132 (494)
.+..++..|+|++|+..|.+++..+|+++.+|..+|.+|...|++ ++|+..++++++
T Consensus 16 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~-----------------------~~A~~~~~~al~ 72 (177)
T 2e2e_A 16 PLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDY-----------------------SNSLLAYRQALQ 72 (177)
T ss_dssp TTCCCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCH-----------------------HHHHHHHHHHHH
T ss_pred hhhhhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH-----------------------HHHHHHHHHHHH
Confidence 445567889999999999999999999999999999999999999 999999999999
Q ss_pred ccccchHHHHHHHHH-HHHHHHH--HHHHHHHHccccCCCCCchhHHHHHHHHh
Q 011050 133 LQSNSMKSHLLKANA-LILLERY--DMARDAILSGLQVDPFSNPLQASLQNLER 183 (494)
Q Consensus 133 l~p~~~~a~~~~g~~-~~~~~~~--~~A~~~~~~al~l~p~~~~~~~~~~~~~~ 183 (494)
++|+++.+++.+|.+ +...|++ ++|+..|+++++++|++..+...+..+..
T Consensus 73 ~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 126 (177)
T 2e2e_A 73 LRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAF 126 (177)
T ss_dssp HHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 999999999999999 7899999 99999999999999999887766555433
No 141
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.90 E-value=8.5e-10 Score=87.24 Aligned_cols=49 Identities=22% Similarity=0.678 Sum_probs=43.5
Q ss_pred CCcccccccccccccC---cEEcCCCCcccHhhHHHhccCCCCCCCCCcccc
Q 011050 199 RTDDFDCTLCLKLLYE---PITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 247 (494)
Q Consensus 199 ~~~~~~C~iC~~~~~~---Pv~~~cgh~fc~~Cl~~~~~~~~~CP~Cr~~~~ 247 (494)
......|+||++.+.. ++.++|||.||..||..|+.....||+||..+.
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 4467889999998887 778999999999999999998889999999863
No 142
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=1.1e-09 Score=82.98 Aligned_cols=52 Identities=29% Similarity=0.632 Sum_probs=44.2
Q ss_pred CCCCCcccccccccccccCcEE---cCCCCcccHhhHHHhccCCCCCCCCCcccc
Q 011050 196 TPERTDDFDCTLCLKLLYEPIT---TPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 247 (494)
Q Consensus 196 ~~~~~~~~~C~iC~~~~~~Pv~---~~cgh~fc~~Cl~~~~~~~~~CP~Cr~~~~ 247 (494)
.........|+||++.+..+.. ++|||.||..||..|+.....||+||..+.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2ep4_A 9 VKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVL 63 (74)
T ss_dssp CCCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCS
T ss_pred cccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccc
Confidence 3445567899999999987744 499999999999999988889999999874
No 143
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.89 E-value=4.3e-09 Score=98.42 Aligned_cols=112 Identities=11% Similarity=0.028 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHH
Q 011050 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (494)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (494)
....+...|..++..|++++|+..|.++++.+|.+..++.++|.+|...|++ ++|+.
T Consensus 70 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~-----------------------~~A~~ 126 (252)
T 2ho1_A 70 SADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRY-----------------------EEAYQ 126 (252)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHH-----------------------HHHHH
Confidence 4567788888899999999999999999999998888999999999998888 88888
Q ss_pred HHHHHhh--ccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHH
Q 011050 126 DAEKLLN--LQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQN 180 (494)
Q Consensus 126 ~~~~al~--l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~ 180 (494)
.+++++. .+|.+..+++.+|.+|...|++++|+..|.++++++|.+..+...+..
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~ 183 (252)
T 2ho1_A 127 RLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMAD 183 (252)
T ss_dssp HHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred HHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence 8888888 778888888888888888888888888888888888887766554433
No 144
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.88 E-value=1.4e-09 Score=82.96 Aligned_cols=49 Identities=31% Similarity=0.719 Sum_probs=39.8
Q ss_pred CCccccccccccccc--CcEEcC--CCCcccHhhHHHhccC-CCCCCCCCcccc
Q 011050 199 RTDDFDCTLCLKLLY--EPITTP--CGHSFCRSCLFQSMDR-GNKCPLCRAVLF 247 (494)
Q Consensus 199 ~~~~~~C~iC~~~~~--~Pv~~~--cgh~fc~~Cl~~~~~~-~~~CP~Cr~~~~ 247 (494)
..+++.|+||++.+. +++.++ |||+||..|+..++.. ...||.||..+.
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~ 61 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYP 61 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCS
T ss_pred cccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccC
Confidence 457789999999884 445555 9999999999998854 467999999874
No 145
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.88 E-value=6.5e-10 Score=98.89 Aligned_cols=67 Identities=30% Similarity=0.729 Sum_probs=54.0
Q ss_pred CCCCcccccccccccccCcEEcCCCCcccHhhHHHhccCC-CCCCCCCcccccCCCCCcccccHHHHHHH
Q 011050 197 PERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRG-NKCPLCRAVLFITPRTCAVSVTLNSIIQK 265 (494)
Q Consensus 197 ~~~~~~~~C~iC~~~~~~Pv~~~cgh~fc~~Cl~~~~~~~-~~CP~Cr~~~~~~~~~~~~~~~l~~~~~~ 265 (494)
....+.+.|+||++++.+|+.++|||+||..||..|+..+ ..||.||..+.. ..+.++..+.+.+.+
T Consensus 13 ~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~--~~~~~~~~~~~~i~~ 80 (170)
T 3hcs_A 13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE--NQLFPDNFAKREILS 80 (170)
T ss_dssp SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG--GGCEECHHHHHHHHT
T ss_pred cCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch--hhhhhhHHHHHHHhh
Confidence 3456789999999999999999999999999999998754 489999998743 344556566666554
No 146
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.88 E-value=8.5e-10 Score=83.86 Aligned_cols=49 Identities=24% Similarity=0.598 Sum_probs=43.6
Q ss_pred CCcccccccccccccCc---EEcCCCCcccHhhHHHhccCCCCCCCCCcccc
Q 011050 199 RTDDFDCTLCLKLLYEP---ITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 247 (494)
Q Consensus 199 ~~~~~~C~iC~~~~~~P---v~~~cgh~fc~~Cl~~~~~~~~~CP~Cr~~~~ 247 (494)
......|+||++.+..+ +.++|||.||..||..|+.....||+||..+.
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSG 71 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCC
Confidence 44677899999999888 67899999999999999988889999999874
No 147
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.87 E-value=3.9e-09 Score=104.56 Aligned_cols=97 Identities=19% Similarity=0.205 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHH
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (494)
+..+...|..+++.|+|++|+.+|.+|++++|+++.+|+++|.+|..+|+| ++|+..
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~-----------------------~~A~~~ 252 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDF-----------------------ELARAD 252 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCH-----------------------HHHHHH
Confidence 567889999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHHHHHHH-HHHHHcccc
Q 011050 127 AEKLLNLQSNSMKSHLLKANALILLERYDMA-RDAILSGLQ 166 (494)
Q Consensus 127 ~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A-~~~~~~al~ 166 (494)
++++++++|++..+++.+|.++..+|++++| ...|.+++.
T Consensus 253 ~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 253 FQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 556666653
No 148
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.87 E-value=3.8e-09 Score=96.34 Aligned_cols=113 Identities=13% Similarity=0.075 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHH-HhhhccCCCCCccccccCCCCCchhHHHHHH
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRI-SQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (494)
...+...|..++..|++++|+..|.+++..+|.+..++.++|.++... |++ ++|+.
T Consensus 42 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~-----------------------~~A~~ 98 (225)
T 2vq2_A 42 ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRP-----------------------AESMA 98 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCH-----------------------HHHHH
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcH-----------------------HHHHH
Confidence 456778899999999999999999999999999999999999999999 999 99999
Q ss_pred HHHHHhh--ccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHH
Q 011050 126 DAEKLLN--LQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLE 182 (494)
Q Consensus 126 ~~~~al~--l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~ 182 (494)
.++++++ .+|....+++.+|.++...|++++|+..|.++++.+|++..+...+..+-
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 157 (225)
T 2vq2_A 99 YFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTK 157 (225)
T ss_dssp HHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 9999999 67777899999999999999999999999999999998877666554443
No 149
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.86 E-value=7.8e-10 Score=94.79 Aligned_cols=93 Identities=12% Similarity=-0.016 Sum_probs=83.1
Q ss_pred HHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHH
Q 011050 68 SNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANA 147 (494)
Q Consensus 68 ~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~a~~~~g~~ 147 (494)
..|.+++.++|++..+++++|.+++..|+| ++|+..+++++.++|+++.+|+.+|.+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~-----------------------~~A~~~~~~al~~~p~~~~~~~~lg~~ 61 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKW-----------------------DDAQKIFQALCMLDHYDARYFLGLGAC 61 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCH-----------------------HHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccH-----------------------HHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 568889999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHh
Q 011050 148 LILLERYDMARDAILSGLQVDPFSNPLQASLQNLER 183 (494)
Q Consensus 148 ~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~ 183 (494)
|..+|++++|+..|+++++++|++..+...+..+-.
T Consensus 62 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 62 RQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 999999999999999999999999987665544433
No 150
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.85 E-value=2.5e-09 Score=103.69 Aligned_cols=55 Identities=13% Similarity=0.012 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhH
Q 011050 121 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQ 175 (494)
Q Consensus 121 ~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~ 175 (494)
++|+..++++++.+|+++.+++.+|.+|..+|++++|...|+++++++|+++.+.
T Consensus 183 ~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l 237 (291)
T 3mkr_A 183 QDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETL 237 (291)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 5555555555555555555555555555555555555555555555555554443
No 151
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.84 E-value=3.9e-09 Score=102.21 Aligned_cols=101 Identities=15% Similarity=0.178 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHH
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (494)
...+...|..++..|++++|+..|.++++.+|+++.++.++|.++...|++ ++|+..
T Consensus 172 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----------------------~~A~~~ 228 (327)
T 3cv0_A 172 AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRP-----------------------QEALDA 228 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH-----------------------HHHHHH
Confidence 456777899999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCC
Q 011050 127 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPF 170 (494)
Q Consensus 127 ~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~ 170 (494)
++++++++|++..+++.+|.+|..+|++++|+..|+++++++|+
T Consensus 229 ~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 229 YNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVG 272 (327)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 99999999999999999999999999999999999999999998
No 152
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.84 E-value=1.1e-08 Score=96.66 Aligned_cols=104 Identities=14% Similarity=0.062 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHH
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (494)
...+...|..++..|+|++|+..|.++++++|+++.++.++|.+|..+|++ ++|+..
T Consensus 77 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~-----------------------~~A~~~ 133 (275)
T 1xnf_A 77 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRD-----------------------KLAQDD 133 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCH-----------------------HHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccH-----------------------HHHHHH
Confidence 456778899999999999999999999999999999999999999999998 555555
Q ss_pred HHHHhhccccc---------------------------------------------------------------------
Q 011050 127 AEKLLNLQSNS--------------------------------------------------------------------- 137 (494)
Q Consensus 127 ~~~al~l~p~~--------------------------------------------------------------------- 137 (494)
++++++++|++
T Consensus 134 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 213 (275)
T 1xnf_A 134 LLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEH 213 (275)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHH
T ss_pred HHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhccccccccc
Confidence 55555555443
Q ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCch
Q 011050 138 -MKSHLLKANALILLERYDMARDAILSGLQVDPFSNP 173 (494)
Q Consensus 138 -~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~ 173 (494)
..+++.+|.+|..+|++++|+..|+++++++|++..
T Consensus 214 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 214 LSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred ccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 467788888888889999999999999998887654
No 153
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.83 E-value=3.7e-09 Score=102.31 Aligned_cols=106 Identities=15% Similarity=0.030 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHh-cChHHHHHHHHHHhccCCCC------cccccChhHHHHHHHhhhccCCCCCccccccCCCCCchh
Q 011050 47 VFDLVQKGNRAFRE-SNFEEAISNYSRANNIKPGD------PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTH 119 (494)
Q Consensus 47 ~~~~~~~g~~~~~~-~~~~~Ai~~y~~al~~~p~~------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (494)
+..+...|..+... |++++|+.+|.+|+++.|.+ ..++.++|.+|..+|+|
T Consensus 117 a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~---------------------- 174 (292)
T 1qqe_A 117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQY---------------------- 174 (292)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH----------------------
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCH----------------------
Confidence 55677889999997 99999999999999998865 46789999999999999
Q ss_pred HHHHHHHHHHHhhccccchH-------HHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhH
Q 011050 120 AELALKDAEKLLNLQSNSMK-------SHLLKANALILLERYDMARDAILSGLQVDPFSNPLQ 175 (494)
Q Consensus 120 ~~~a~~~~~~al~l~p~~~~-------a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~ 175 (494)
++|+..++++++++|++.. +++.+|.+|..+|++++|+..|+++++++|++....
T Consensus 175 -~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 236 (292)
T 1qqe_A 175 -IEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR 236 (292)
T ss_dssp -HHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--------
T ss_pred -HHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH
Confidence 9999999999999987643 688999999999999999999999999999877643
No 154
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.83 E-value=3.8e-09 Score=109.82 Aligned_cols=104 Identities=11% Similarity=0.158 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHH
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (494)
+..+...|..+++.|+|++|+..|.+|++++|+++.+|.++|.+|..+|++ ++|+..
T Consensus 40 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~-----------------------~eA~~~ 96 (477)
T 1wao_1 40 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF-----------------------RAALRD 96 (477)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH-----------------------HHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-----------------------HHHHHH
Confidence 567888999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHH--HHHHHHHHHHHHHHH-----------ccccCCCCCch
Q 011050 127 AEKLLNLQSNSMKSHLLKANA--LILLERYDMARDAIL-----------SGLQVDPFSNP 173 (494)
Q Consensus 127 ~~~al~l~p~~~~a~~~~g~~--~~~~~~~~~A~~~~~-----------~al~l~p~~~~ 173 (494)
++++++++|++..++..+|.+ +...|++++|++.++ +++.++|+...
T Consensus 97 ~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~ 156 (477)
T 1wao_1 97 YETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSG 156 (477)
T ss_dssp HHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCS
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccccc
Confidence 999999999999999999998 889999999999999 99999987543
No 155
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.82 E-value=5.2e-09 Score=101.34 Aligned_cols=109 Identities=13% Similarity=0.050 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHH
Q 011050 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (494)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (494)
....++..|..++..|+|++|+..|.++++.+|++..++..+|.++...|++ ++|+.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----------------------~~A~~ 76 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKD-----------------------GLAII 76 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-----------------------HHHHH
Confidence 4567889999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHH
Q 011050 126 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQAS 177 (494)
Q Consensus 126 ~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~ 177 (494)
.++++++++|++..+++.+|.+|...|++++|+..|.++++++|.+..+...
T Consensus 77 ~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 128 (327)
T 3cv0_A 77 ALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSV 128 (327)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC---
T ss_pred HHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHH
Confidence 9999999999999999999999999999999999999999999988765443
No 156
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.81 E-value=5.6e-09 Score=110.76 Aligned_cols=105 Identities=13% Similarity=0.001 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHH
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (494)
...+...|..++..|++++|+..|.++++++|+++.++.++|.+|..+|++ ++|+..
T Consensus 57 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-----------------------~~A~~~ 113 (568)
T 2vsy_A 57 PEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQA-----------------------EAAAAA 113 (568)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH-----------------------HHHHHH
Confidence 567788999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHHHHHH---HHHHHHHHHHHccccCCCCCchh
Q 011050 127 AEKLLNLQSNSMKSHLLKANALILL---ERYDMARDAILSGLQVDPFSNPL 174 (494)
Q Consensus 127 ~~~al~l~p~~~~a~~~~g~~~~~~---~~~~~A~~~~~~al~l~p~~~~~ 174 (494)
++++++++|++..+++.+|.+|..+ |++++|++.|+++++.+|.+...
T Consensus 114 ~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 164 (568)
T 2vsy_A 114 YTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEP 164 (568)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccCh
Confidence 9999999999999999999999999 99999999999999999986543
No 157
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.80 E-value=1.2e-09 Score=87.79 Aligned_cols=76 Identities=18% Similarity=0.152 Sum_probs=69.7
Q ss_pred cCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHH
Q 011050 76 IKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYD 155 (494)
Q Consensus 76 ~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~ 155 (494)
.+|+++.+++++|.+|+..|+| ++|+..++++++++|+++.+|+.+|.+|..+|+++
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~-----------------------~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~ 58 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNA-----------------------SRALALFEELVETDPDYVGTYYHLGKLYERLDRTD 58 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCH-----------------------HHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHH
T ss_pred CCccCHHHHHHHHHHHHHcCCH-----------------------HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Confidence 4799999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHccccCCCCCchh
Q 011050 156 MARDAILSGLQVDPFSNPL 174 (494)
Q Consensus 156 ~A~~~~~~al~l~p~~~~~ 174 (494)
+|+..|++++++.|.+...
T Consensus 59 ~A~~~~~~al~l~~~~~~~ 77 (100)
T 3ma5_A 59 DAIDTYAQGIEVAREEGTQ 77 (100)
T ss_dssp HHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHhhhhcCCch
Confidence 9999999999998865544
No 158
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.79 E-value=1.5e-08 Score=98.14 Aligned_cols=97 Identities=7% Similarity=-0.009 Sum_probs=85.3
Q ss_pred HhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhccccch
Q 011050 59 RESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSM 138 (494)
Q Consensus 59 ~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~ 138 (494)
..|++++|+..|+++++..|+++.+|.++|.++..+|++ ++|+..+++++.++|+++
T Consensus 178 ~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~-----------------------~eA~~~l~~al~~~p~~~ 234 (291)
T 3mkr_A 178 GGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRW-----------------------EAAEGVLQEALDKDSGHP 234 (291)
T ss_dssp CTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCH-----------------------HHHHHHHHHHHHHCTTCH
T ss_pred CchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH-----------------------HHHHHHHHHHHHhCCCCH
Confidence 347888899999999988999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHccccCCCCCchhHHHH
Q 011050 139 KSHLLKANALILLERYDM-ARDAILSGLQVDPFSNPLQASL 178 (494)
Q Consensus 139 ~a~~~~g~~~~~~~~~~~-A~~~~~~al~l~p~~~~~~~~~ 178 (494)
.+++++|.++..+|++.+ +...++++++++|+++.+....
T Consensus 235 ~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~~ 275 (291)
T 3mkr_A 235 ETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYR 275 (291)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 999999999999999976 4678899999999998776543
No 159
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.77 E-value=1.9e-08 Score=87.23 Aligned_cols=97 Identities=11% Similarity=0.151 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHH
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (494)
...+...|..++..|+|++|+..|.+++.++|.++.++.++|.++..+|++ ++|+..
T Consensus 47 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~-----------------------~~A~~~ 103 (166)
T 1a17_A 47 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF-----------------------RAALRD 103 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccH-----------------------HHHHHH
Confidence 566788999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHH--HHHHHHHHHHHHHHHcccc
Q 011050 127 AEKLLNLQSNSMKSHLLKANA--LILLERYDMARDAILSGLQ 166 (494)
Q Consensus 127 ~~~al~l~p~~~~a~~~~g~~--~~~~~~~~~A~~~~~~al~ 166 (494)
++++++++|.+..++..++.+ +...|++++|+..+.++..
T Consensus 104 ~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 104 YETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999888555544 8889999999999887543
No 160
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.76 E-value=2.6e-09 Score=80.87 Aligned_cols=43 Identities=30% Similarity=0.839 Sum_probs=39.1
Q ss_pred cccccccccccccCcEEcCCCCc-ccHhhHHHhccCCCCCCCCCcccc
Q 011050 201 DDFDCTLCLKLLYEPITTPCGHS-FCRSCLFQSMDRGNKCPLCRAVLF 247 (494)
Q Consensus 201 ~~~~C~iC~~~~~~Pv~~~cgh~-fc~~Cl~~~~~~~~~CP~Cr~~~~ 247 (494)
+...|+||++.+.+|+.+||||+ ||..|+..| ..||.||..+.
T Consensus 23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~ 66 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVIT 66 (74)
T ss_dssp HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC----SBCTTTCCBCS
T ss_pred cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC----ccCCCcCcCcc
Confidence 45789999999999999999999 999999887 68999999863
No 161
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.76 E-value=6e-09 Score=86.07 Aligned_cols=47 Identities=28% Similarity=0.634 Sum_probs=39.7
Q ss_pred cccccccccccccCcE------------------EcCCCCcccHhhHHHhcc-----CCCCCCCCCcccc
Q 011050 201 DDFDCTLCLKLLYEPI------------------TTPCGHSFCRSCLFQSMD-----RGNKCPLCRAVLF 247 (494)
Q Consensus 201 ~~~~C~iC~~~~~~Pv------------------~~~cgh~fc~~Cl~~~~~-----~~~~CP~Cr~~~~ 247 (494)
.+..|+||++.|..|. .++|||.||..||..|+. ....||+||..+.
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence 3568999999997764 679999999999999994 4568999999874
No 162
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.75 E-value=2.5e-09 Score=90.90 Aligned_cols=48 Identities=35% Similarity=0.897 Sum_probs=44.3
Q ss_pred CcccccccccccccCc-------EEcCCCCcccHhhHHHhccCCCCCCCCCcccc
Q 011050 200 TDDFDCTLCLKLLYEP-------ITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 247 (494)
Q Consensus 200 ~~~~~C~iC~~~~~~P-------v~~~cgh~fc~~Cl~~~~~~~~~CP~Cr~~~~ 247 (494)
.+.+.|+||++.+.+| +.++|||+||..||..|+.....||.||..+.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 59 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 59 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCc
Confidence 3578999999999999 89999999999999999998889999999874
No 163
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.74 E-value=1.2e-08 Score=98.78 Aligned_cols=106 Identities=12% Similarity=-0.091 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCC------cccccChhHHHHHH-HhhhccCCCCCccccccCCCCCch
Q 011050 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD------PIVLGNRSSAYIRI-SQFLKHRPPSASEYRPLNGLDPTT 118 (494)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~------~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 118 (494)
.+..+...|..+...|+|++|+.+|.+|+++.|.. ..+|.++|.+|... |++
T Consensus 76 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~--------------------- 134 (292)
T 1qqe_A 76 AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDY--------------------- 134 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCH---------------------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCH---------------------
Confidence 35678889999999999999999999999997754 46888999999995 999
Q ss_pred hHHHHHHHHHHHhhccccc------hHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchh
Q 011050 119 HAELALKDAEKLLNLQSNS------MKSHLLKANALILLERYDMARDAILSGLQVDPFSNPL 174 (494)
Q Consensus 119 ~~~~a~~~~~~al~l~p~~------~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~ 174 (494)
++|+..+++|+++.|.. ..++..+|.+|..+|+|++|+..|+++++++|++...
T Consensus 135 --~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 194 (292)
T 1qqe_A 135 --AKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLS 194 (292)
T ss_dssp --HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTT
T ss_pred --HHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcc
Confidence 99999999999998864 5678999999999999999999999999999987653
No 164
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.73 E-value=3.7e-09 Score=104.84 Aligned_cols=102 Identities=12% Similarity=0.044 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHH
Q 011050 49 DLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAE 128 (494)
Q Consensus 49 ~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 128 (494)
.+...|..+++.|+|++|+.+|.+|++++|++..+|+++|.+|..+|+| ++|+..++
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~-----------------------~~A~~~l~ 288 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQM-----------------------DSARDDFR 288 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH-----------------------HHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-----------------------HHHHHHHH
Confidence 5678899999999999999999999999999999999999999999999 99999999
Q ss_pred HHhhccccchHHHHHHHHHH-HHHHHHHHHHHHHHccccCCCCCch
Q 011050 129 KLLNLQSNSMKSHLLKANAL-ILLERYDMARDAILSGLQVDPFSNP 173 (494)
Q Consensus 129 ~al~l~p~~~~a~~~~g~~~-~~~~~~~~A~~~~~~al~l~p~~~~ 173 (494)
++++++|++..++..++.+. ...+..+++...|.+++.++|+++.
T Consensus 289 ~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 289 KAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp HTTC------------------------------------------
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence 99999999999999999984 5677888999999999999998765
No 165
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.72 E-value=2.5e-08 Score=102.47 Aligned_cols=116 Identities=10% Similarity=0.049 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhcc---------CCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCc
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNI---------KPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPT 117 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~---------~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (494)
+..+...|..++..|+|++|+.+|.+|+++ +|.....|.|+|.+|..+|+|
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~-------------------- 110 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRL-------------------- 110 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCH--------------------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCCh--------------------
Confidence 455667899999999999999999999986 566778899999999999999
Q ss_pred hhHHHHHHHHHHHhhccc--------cchHHHHHHHHHHHHH--HHHHHHHHHHHccccCCCCCchhHHHHHHHHhhh
Q 011050 118 THAELALKDAEKLLNLQS--------NSMKSHLLKANALILL--ERYDMARDAILSGLQVDPFSNPLQASLQNLERTT 185 (494)
Q Consensus 118 ~~~~~a~~~~~~al~l~p--------~~~~a~~~~g~~~~~~--~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~ 185 (494)
++|+..+++++.+.+ ..+.++..+|.++... ++|++|++.|+++++++|+++.+...+..+...+
T Consensus 111 ---~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l 185 (472)
T 4g1t_A 111 ---SDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRL 185 (472)
T ss_dssp ---HHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 999999999998743 4567888899887654 6899999999999999999998877666554333
No 166
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.72 E-value=1.3e-08 Score=106.05 Aligned_cols=107 Identities=14% Similarity=0.123 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHH
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (494)
+..+...|..++..|++++|+..|.++++.+|+ ..++..+|.++...|++ ++|+..
T Consensus 243 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~-----------------------~~A~~~ 298 (537)
T 3fp2_A 243 ALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENS-----------------------QEFFKF 298 (537)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCC-----------------------HHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCH-----------------------HHHHHH
Confidence 445566666666666666666666666666665 55566666666666666 566666
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHH
Q 011050 127 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQAS 177 (494)
Q Consensus 127 ~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~ 177 (494)
++++++.+|+++.+++.+|.+|...|++++|+..|+++++++|++..+...
T Consensus 299 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 349 (537)
T 3fp2_A 299 FQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQ 349 (537)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHH
T ss_pred HHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 666666666666666666666666666666666666666666655544433
No 167
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.71 E-value=8.1e-09 Score=79.57 Aligned_cols=48 Identities=25% Similarity=0.647 Sum_probs=40.8
Q ss_pred CcccccccccccccC--------------cEEc-CCCCcccHhhHHHhccCCCCCCCCCcccc
Q 011050 200 TDDFDCTLCLKLLYE--------------PITT-PCGHSFCRSCLFQSMDRGNKCPLCRAVLF 247 (494)
Q Consensus 200 ~~~~~C~iC~~~~~~--------------Pv~~-~cgh~fc~~Cl~~~~~~~~~CP~Cr~~~~ 247 (494)
.++..|+||++.+.+ ++.+ +|||.||..||..|+.....||+||.++.
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence 356779999999876 4455 59999999999999998889999999863
No 168
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.70 E-value=2.7e-08 Score=105.44 Aligned_cols=115 Identities=6% Similarity=-0.096 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHHhcC----------hHHHHHHHHHHhccCCCCcccccChhHHHHHHH--hhhccCCCCCccccccCC
Q 011050 46 HVFDLVQKGNRAFRESN----------FEEAISNYSRANNIKPGDPIVLGNRSSAYIRIS--QFLKHRPPSASEYRPLNG 113 (494)
Q Consensus 46 ~~~~~~~~g~~~~~~~~----------~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~--~~~~~~~~~~~~~~~~~~ 113 (494)
.+..|..+|..+...|+ +++|+..|.++++.+|+++.+|++|+.++..++ +|
T Consensus 62 ~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~---------------- 125 (567)
T 1dce_A 62 FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW---------------- 125 (567)
T ss_dssp CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCH----------------
T ss_pred hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccH----------------
Confidence 45678888888888888 999999999999999999999999999999988 67
Q ss_pred CCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHH-HHHHHHHHHHccccCCCCCchhHHHHHHHHh
Q 011050 114 LDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLE-RYDMARDAILSGLQVDPFSNPLQASLQNLER 183 (494)
Q Consensus 114 ~~~~~~~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~-~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~ 183 (494)
+++++.+++++++||.+..||..+|.++..+| .++++++++.++++.+|.|..++.....+-.
T Consensus 126 -------~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~ 189 (567)
T 1dce_A 126 -------ARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLP 189 (567)
T ss_dssp -------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHH
Confidence 99999999999999999999999999999999 9999999999999999999988776555433
No 169
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=98.70 E-value=1.8e-08 Score=106.75 Aligned_cols=112 Identities=19% Similarity=0.210 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhcc------CCCC-cccccChhHHHHHHHhhhccCCCCCccccccCCCCCchh
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNI------KPGD-PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTH 119 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~------~p~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (494)
...+...|..+.+.|++++|+..|.++++. +|++ ..+|.++|.+|...|++
T Consensus 475 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~---------------------- 532 (597)
T 2xpi_A 475 PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMY---------------------- 532 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCH----------------------
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCH----------------------
Confidence 345667788888888888888888888877 5554 56788888888888888
Q ss_pred HHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHH
Q 011050 120 AELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (494)
Q Consensus 120 ~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 181 (494)
++|++.++++++++|+++.+|+.+|.+|...|++++|+..|+++++++|++..+...+..+
T Consensus 533 -~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 593 (597)
T 2xpi_A 533 -DAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRA 593 (597)
T ss_dssp -HHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999887766554
No 170
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.70 E-value=2.7e-08 Score=102.77 Aligned_cols=97 Identities=13% Similarity=0.141 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHH
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (494)
+..+...|..+++.|+|++|+.+|++|++++|+++.+|+++|.+|+.+++| ++|+.+
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~-----------------------~~A~~~ 373 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEF-----------------------ESAKGD 373 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH-----------------------HHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCH-----------------------HHHHHH
Confidence 467788999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHHHHHHHHH-HHHcccc
Q 011050 127 AEKLLNLQSNSMKSHLLKANALILLERYDMARD-AILSGLQ 166 (494)
Q Consensus 127 ~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~-~~~~al~ 166 (494)
+++|++++|++..++..+|.++..++++++|.. .|.+.+.
T Consensus 374 ~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 374 FEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998864 4555543
No 171
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.68 E-value=1.9e-08 Score=104.02 Aligned_cols=112 Identities=15% Similarity=0.054 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcc------cccChhHHHHH---HHhhhccCCCCCccccccCCCCCch
Q 011050 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPI------VLGNRSSAYIR---ISQFLKHRPPSASEYRPLNGLDPTT 118 (494)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~------~~~~~a~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (494)
..+...|..++..|++++|+..|.+++...|++.. ++.++|.++.. .|++
T Consensus 373 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------------------- 431 (514)
T 2gw1_A 373 EVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENF--------------------- 431 (514)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHH---------------------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCH---------------------
Confidence 45667788888999999999999999998888765 88889999998 8999
Q ss_pred hHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHH
Q 011050 119 HAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLE 182 (494)
Q Consensus 119 ~~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~ 182 (494)
++|+..+++++.++|++..+++.+|.+|...|++++|+..|+++++++|++..+...+...+
T Consensus 432 --~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 493 (514)
T 2gw1_A 432 --IEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAE 493 (514)
T ss_dssp --HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998877665443
No 172
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.68 E-value=3.9e-08 Score=88.90 Aligned_cols=98 Identities=12% Similarity=0.020 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHH
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (494)
...+...|..++..|+|++|+.+|.++++++|+++.++.++|.+|..+|+| ++|+..
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~-----------------------~~A~~~ 144 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFL-----------------------EEAKEN 144 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH-----------------------HHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccH-----------------------HHHHHH
Confidence 367788999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHHHHHHHH-HHHHccccC
Q 011050 127 AEKLLNLQSNSMKSHLLKANALILLERYDMAR-DAILSGLQV 167 (494)
Q Consensus 127 ~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~-~~~~~al~l 167 (494)
++++++++|++..++..++.++..++++.++. ..|.+.+..
T Consensus 145 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 145 LYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999887 555555443
No 173
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.68 E-value=4.8e-09 Score=75.83 Aligned_cols=46 Identities=20% Similarity=0.247 Sum_probs=41.9
Q ss_pred ccccccccccccCcEEc-CCCCcccHhhHHHhccCCCCCCCCCcccc
Q 011050 202 DFDCTLCLKLLYEPITT-PCGHSFCRSCLFQSMDRGNKCPLCRAVLF 247 (494)
Q Consensus 202 ~~~C~iC~~~~~~Pv~~-~cgh~fc~~Cl~~~~~~~~~CP~Cr~~~~ 247 (494)
.+.|+||++++.+||.. +|||+||+.||..|+..+..||.++.++.
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~ 49 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLS 49 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCC
Confidence 57899999999999999 99999999999999986667999999884
No 174
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.67 E-value=3.7e-08 Score=86.01 Aligned_cols=89 Identities=12% Similarity=-0.031 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHH
Q 011050 44 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 123 (494)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 123 (494)
...+..+...|..+++.|+|++|+..|.+|++++|+++.+|+++|.+|..+|+| ++|
T Consensus 60 ~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~-----------------------~~A 116 (162)
T 3rkv_A 60 RKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKL-----------------------DEA 116 (162)
T ss_dssp HTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH-----------------------HHH
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcH-----------------------HHH
Confidence 445677889999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHhhccccch-HHHHHHHHHHHHHHHHH
Q 011050 124 LKDAEKLLNLQSNSM-KSHLLKANALILLERYD 155 (494)
Q Consensus 124 ~~~~~~al~l~p~~~-~a~~~~g~~~~~~~~~~ 155 (494)
+.++++++.++|++. .....++.+....+++.
T Consensus 117 ~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~ 149 (162)
T 3rkv_A 117 EEDLKLLLRNHPAAASVVAREMKIVTERRAEKK 149 (162)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998 55666666665555444
No 175
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.66 E-value=8e-08 Score=93.47 Aligned_cols=109 Identities=9% Similarity=-0.031 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHH-------HhcCh-------HHHHHHHHHHhc-cCCCCcccccChhHHHHHHHhhhccCCCCCcccccc
Q 011050 47 VFDLVQKGNRAF-------RESNF-------EEAISNYSRANN-IKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPL 111 (494)
Q Consensus 47 ~~~~~~~g~~~~-------~~~~~-------~~Ai~~y~~al~-~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 111 (494)
+..|...|..+. ..|++ ++|+..|.+|++ ++|++..+|.++|.++...|++
T Consensus 50 ~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~-------------- 115 (308)
T 2ond_A 50 PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKY-------------- 115 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCH--------------
T ss_pred HHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCH--------------
Confidence 455666666665 35886 899999999999 7999999999999999999999
Q ss_pred CCCCCchhHHHHHHHHHHHhhccccchH-HHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHH
Q 011050 112 NGLDPTTHAELALKDAEKLLNLQSNSMK-SHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASL 178 (494)
Q Consensus 112 ~~~~~~~~~~~a~~~~~~al~l~p~~~~-a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~ 178 (494)
++|...++++++++|.++. +|..+|.++...|++++|+..|.+|++++|.+..+....
T Consensus 116 ---------~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 174 (308)
T 2ond_A 116 ---------EKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTA 174 (308)
T ss_dssp ---------HHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHH
T ss_pred ---------HHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999987 999999999999999999999999999999887665433
No 176
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.66 E-value=4.9e-08 Score=95.01 Aligned_cols=115 Identities=12% Similarity=-0.054 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcc-cccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHH
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPI-VLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (494)
...+...|..+...|++++|...|.++++++|.++. +|.++|.++...|++ ++|..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~-----------------------~~A~~ 155 (308)
T 2ond_A 99 MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGI-----------------------KSGRM 155 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCH-----------------------HHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCH-----------------------HHHHH
Confidence 456778888999999999999999999999999997 999999999999999 99999
Q ss_pred HHHHHhhccccchHHHHHHHHHHH-HHHHHHHHHHHHHccccCCCCCchhHHHHHHHHhh
Q 011050 126 DAEKLLNLQSNSMKSHLLKANALI-LLERYDMARDAILSGLQVDPFSNPLQASLQNLERT 184 (494)
Q Consensus 126 ~~~~al~l~p~~~~a~~~~g~~~~-~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~ 184 (494)
.+++|++.+|.....|...|.... ..|++++|+..|+++++++|++..++..+..+...
T Consensus 156 ~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 215 (308)
T 2ond_A 156 IFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH 215 (308)
T ss_dssp HHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 999999999998888775555533 36999999999999999999998887766655443
No 177
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.66 E-value=1.4e-08 Score=97.71 Aligned_cols=108 Identities=8% Similarity=0.059 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHH
Q 011050 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (494)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (494)
.+..+...|..++..|+|++|+..|.+|++++|+++.+++++|.+|..+|++ ++|+.
T Consensus 37 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-----------------------~~A~~ 93 (281)
T 2c2l_A 37 VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESY-----------------------DEAIA 93 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-----------------------HHHHH
Confidence 3567888999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccchHH-------HHHHHH----------------------HHHHHHHHHHHHHHHHccccCCCCCchhHH
Q 011050 126 DAEKLLNLQSNSMKS-------HLLKAN----------------------ALILLERYDMARDAILSGLQVDPFSNPLQA 176 (494)
Q Consensus 126 ~~~~al~l~p~~~~a-------~~~~g~----------------------~~~~~~~~~~A~~~~~~al~l~p~~~~~~~ 176 (494)
.++++++++|++... .+..+. .....|++++|++.|+++++++|++..+..
T Consensus 94 ~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~A~~~~~~al~~~p~~~~~~~ 173 (281)
T 2c2l_A 94 NLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRA 173 (281)
T ss_dssp HHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHHHHTTTSGGGTTTSCHHHHTH
T ss_pred HHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhhh
Confidence 999999999975311 111110 112378999999999999999998765443
No 178
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.65 E-value=9.4e-09 Score=86.42 Aligned_cols=71 Identities=14% Similarity=0.084 Sum_probs=66.0
Q ss_pred cccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHH
Q 011050 81 PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDA 160 (494)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~ 160 (494)
+.++.++|.++++.|+| ++|+..+++|++++|+++.+|+.+|.+|..+|+|++|+.+
T Consensus 8 A~a~~~lG~~~~~~~~~-----------------------~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~ 64 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDF-----------------------EKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQF 64 (127)
T ss_dssp HHHHHHHHHHHHHTTCH-----------------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCH-----------------------HHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHH
Confidence 35567899999999999 9999999999999999999999999999999999999999
Q ss_pred HHccccCCCCCchh
Q 011050 161 ILSGLQVDPFSNPL 174 (494)
Q Consensus 161 ~~~al~l~p~~~~~ 174 (494)
|+++++++|++...
T Consensus 65 ~~~al~~~~~~~~~ 78 (127)
T 4gcn_A 65 CEKAVEVGRETRAD 78 (127)
T ss_dssp HHHHHHHHHHTTCC
T ss_pred HHHHHHhCcccchh
Confidence 99999999987643
No 179
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.65 E-value=4.2e-08 Score=104.03 Aligned_cols=117 Identities=10% Similarity=-0.039 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHHHhc--ChHHHHHHHHHHhccCCCCcccccChhHHHHHHH-hhhccCCCCCccccccCCCCCchhHH
Q 011050 45 THVFDLVQKGNRAFRES--NFEEAISNYSRANNIKPGDPIVLGNRSSAYIRIS-QFLKHRPPSASEYRPLNGLDPTTHAE 121 (494)
Q Consensus 45 ~~~~~~~~~g~~~~~~~--~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (494)
+....|..+|..+.+.+ +|++|+..|.++++.+|.+..+|.+|+.+...++ .+ +
T Consensus 105 K~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~-----------------------~ 161 (567)
T 1dce_A 105 KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAP-----------------------A 161 (567)
T ss_dssp TCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCH-----------------------H
T ss_pred CCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCCh-----------------------H
Confidence 34567888888888889 7799999999999999999999999999999998 78 9
Q ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHH--------------HHHHHHHHHHHccccCCCCCchhHHHHHHHHhh
Q 011050 122 LALKDAEKLLNLQSNSMKSHLLKANALILL--------------ERYDMARDAILSGLQVDPFSNPLQASLQNLERT 184 (494)
Q Consensus 122 ~a~~~~~~al~l~p~~~~a~~~~g~~~~~~--------------~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~ 184 (494)
++++.+.++++.+|.+..||..+|.++..+ +.+++|++++.+|+.++|++..++..+.-+-..
T Consensus 162 ~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~ 238 (567)
T 1dce_A 162 EELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGR 238 (567)
T ss_dssp HHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhc
Confidence 999999999999999999999999999885 889999999999999999999999887766443
No 180
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.64 E-value=1.3e-08 Score=84.65 Aligned_cols=82 Identities=13% Similarity=0.067 Sum_probs=73.2
Q ss_pred CcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHH
Q 011050 80 DPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARD 159 (494)
Q Consensus 80 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~ 159 (494)
.+..|.++|..++..|+| ++|+..++++++++|+++.+|+.+|.+|..+|++++|+.
T Consensus 3 ~a~~~~~~g~~~~~~~~~-----------------------~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~ 59 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDW-----------------------PNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIA 59 (126)
T ss_dssp HHHHHHHHHHHHHHTTCH-----------------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCH-----------------------HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHH
Confidence 445678889999999999 999999999999999999999999999999999999999
Q ss_pred HHHccccCCCCCchhHHHHHHHHhh
Q 011050 160 AILSGLQVDPFSNPLQASLQNLERT 184 (494)
Q Consensus 160 ~~~~al~l~p~~~~~~~~~~~~~~~ 184 (494)
+|+++++++|++..+...+..+...
T Consensus 60 ~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 60 DCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 9999999999998776655544433
No 181
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.64 E-value=3.2e-08 Score=79.40 Aligned_cols=87 Identities=21% Similarity=0.154 Sum_probs=79.0
Q ss_pred cCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHH
Q 011050 76 IKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYD 155 (494)
Q Consensus 76 ~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~ 155 (494)
++|+++.++.++|.+++..|++ .+|+..++++++++|.+..+++.+|.+|..+|+++
T Consensus 1 l~p~~~~~~~~~~~~~~~~~~~-----------------------~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~ 57 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDAGNY-----------------------TESIDLFEKAIQLDPEESKYWLMKGKALYNLERYE 57 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSSCCH-----------------------HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred CCCCcHHHHHHHHHHHHHhhhH-----------------------HHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHH
Confidence 4789999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHccccCCCC--CchhHHHHHHHHhhh
Q 011050 156 MARDAILSGLQVDPF--SNPLQASLQNLERTT 185 (494)
Q Consensus 156 ~A~~~~~~al~l~p~--~~~~~~~~~~~~~~~ 185 (494)
+|+..|+++++++|+ +..+...+..+...+
T Consensus 58 ~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~ 89 (112)
T 2kck_A 58 EAVDCYNYVINVIEDEYNKDVWAAKADALRYI 89 (112)
T ss_dssp HHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCcccchHHHHHHHHHHHHHH
Confidence 999999999999999 877766665554443
No 182
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.63 E-value=1.3e-08 Score=100.49 Aligned_cols=46 Identities=33% Similarity=0.742 Sum_probs=42.1
Q ss_pred ccccccccccccCcEEcCCCCcccHhhHHHhcc-CCCCCCCCCcccc
Q 011050 202 DFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMD-RGNKCPLCRAVLF 247 (494)
Q Consensus 202 ~~~C~iC~~~~~~Pv~~~cgh~fc~~Cl~~~~~-~~~~CP~Cr~~~~ 247 (494)
...|+||++.+.+|+.++|||.||..|+..|.. ....||.||..+.
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~ 378 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK 378 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccC
Confidence 368999999999999999999999999999988 6778999999874
No 183
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.62 E-value=1.3e-08 Score=74.60 Aligned_cols=48 Identities=23% Similarity=0.482 Sum_probs=43.1
Q ss_pred CCcccccccccccccCcEEc--CCCCc-ccHhhHHHhccCCCCCCCCCccc
Q 011050 199 RTDDFDCTLCLKLLYEPITT--PCGHS-FCRSCLFQSMDRGNKCPLCRAVL 246 (494)
Q Consensus 199 ~~~~~~C~iC~~~~~~Pv~~--~cgh~-fc~~Cl~~~~~~~~~CP~Cr~~~ 246 (494)
..++..|.||++...+++.+ ||||. ||..|+..++..+..||+||.++
T Consensus 5 ~~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i 55 (64)
T 2vje_A 5 LNAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPI 55 (64)
T ss_dssp CGGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCC
T ss_pred CCCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcch
Confidence 34667899999999999977 99999 89999999998888999999976
No 184
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.62 E-value=1.9e-08 Score=78.02 Aligned_cols=80 Identities=23% Similarity=0.268 Sum_probs=73.6
Q ss_pred CcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHH
Q 011050 80 DPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARD 159 (494)
Q Consensus 80 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~ 159 (494)
++.++.++|.++...+++ ++|+..++++++++|++..+++.+|.+|..+|++++|+.
T Consensus 8 ~~~~~~~la~~~~~~~~~-----------------------~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 64 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDY-----------------------DEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE 64 (91)
T ss_dssp HHHHHHHHHHHHHHTTCH-----------------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHccCH-----------------------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHH
Confidence 457788899999999999 999999999999999999999999999999999999999
Q ss_pred HHHccccCCCCCchhHHHHHHHH
Q 011050 160 AILSGLQVDPFSNPLQASLQNLE 182 (494)
Q Consensus 160 ~~~~al~l~p~~~~~~~~~~~~~ 182 (494)
.|+++++++|++..+...+..+.
T Consensus 65 ~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 65 YYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHH
Confidence 99999999999988777666553
No 185
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.62 E-value=1.4e-08 Score=95.70 Aligned_cols=101 Identities=14% Similarity=0.021 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcc--------CCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCC
Q 011050 44 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNI--------KPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLD 115 (494)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (494)
...+..+...|..++..|+|++|+..|.+++++ +|....++.++|.+|...|++
T Consensus 40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~------------------ 101 (283)
T 3edt_B 40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKY------------------ 101 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCH------------------
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccH------------------
Confidence 345677888999999999999999999999987 466678999999999999999
Q ss_pred CchhHHHHHHHHHHHhhc--------cccchHHHHHHHHHHHHHHHHHHHHHHHHccccC
Q 011050 116 PTTHAELALKDAEKLLNL--------QSNSMKSHLLKANALILLERYDMARDAILSGLQV 167 (494)
Q Consensus 116 ~~~~~~~a~~~~~~al~l--------~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 167 (494)
++|+..+++++.+ +|....+++.+|.+|..+|++++|+..|++++++
T Consensus 102 -----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 156 (283)
T 3edt_B 102 -----KEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI 156 (283)
T ss_dssp -----HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999998 5888999999999999999999999999999998
No 186
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.62 E-value=4.5e-08 Score=80.61 Aligned_cols=88 Identities=10% Similarity=0.019 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHH
Q 011050 44 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 123 (494)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 123 (494)
+.....+...|..++..|+|++|+..|.++++++|+++.++.++|.++..+|++ ++|
T Consensus 24 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~-----------------------~~A 80 (117)
T 3k9i_A 24 KDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRY-----------------------EQG 80 (117)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH-----------------------HHH
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCH-----------------------HHH
Confidence 456788999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccc
Q 011050 124 LKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGL 165 (494)
Q Consensus 124 ~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al 165 (494)
+..+++++..+|+++... .+..|+..|...+
T Consensus 81 ~~~~~~al~~~p~~~~~~-----------~~~~ai~~~~~~l 111 (117)
T 3k9i_A 81 VELLLKIIAETSDDETIQ-----------SYKQAILFYADKL 111 (117)
T ss_dssp HHHHHHHHHHHCCCHHHH-----------HTHHHHHHHTTCT
T ss_pred HHHHHHHHHhCCCcHHHH-----------HHHHHHHHHHHHH
Confidence 999999999999987654 4666777666654
No 187
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.62 E-value=1.1e-08 Score=77.52 Aligned_cols=43 Identities=30% Similarity=0.839 Sum_probs=37.9
Q ss_pred cccccccccccccCcEEcCCCCc-ccHhhHHHhccCCCCCCCCCcccc
Q 011050 201 DDFDCTLCLKLLYEPITTPCGHS-FCRSCLFQSMDRGNKCPLCRAVLF 247 (494)
Q Consensus 201 ~~~~C~iC~~~~~~Pv~~~cgh~-fc~~Cl~~~~~~~~~CP~Cr~~~~ 247 (494)
+...|+||++.+.+|+.+||||. ||..|+... ..||.||.++.
T Consensus 24 ~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~ 67 (75)
T 2ecg_A 24 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVIT 67 (75)
T ss_dssp HHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC----SBCTTTCCBCC
T ss_pred CCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC----CCCccCCceec
Confidence 35679999999999999999999 999999643 68999999874
No 188
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.62 E-value=5.6e-08 Score=76.98 Aligned_cols=85 Identities=13% Similarity=0.072 Sum_probs=70.8
Q ss_pred CCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHH
Q 011050 77 KPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDM 156 (494)
Q Consensus 77 ~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~ 156 (494)
+|+++.++..+|.+++..++- ....+|...+++++++||+++.+++.+|.+++..|+|++
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~--------------------~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~ 61 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQ--------------------AMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQE 61 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTT--------------------CCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCC--------------------CCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHH
Confidence 688999999999998765551 001899999999999999999999999999999999999
Q ss_pred HHHHHHccccCCCCCchhHHHHHHH
Q 011050 157 ARDAILSGLQVDPFSNPLQASLQNL 181 (494)
Q Consensus 157 A~~~~~~al~l~p~~~~~~~~~~~~ 181 (494)
|+..|+++++.+|.+.........+
T Consensus 62 Ai~~w~~~l~~~p~~~~~~~i~~~I 86 (93)
T 3bee_A 62 AIDTWVLLLDSNDPNLDRVTIIESI 86 (93)
T ss_dssp HHHHHHHHHTCCCTTCCHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCccHHHHHHHH
Confidence 9999999999999955443333333
No 189
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.61 E-value=1.1e-07 Score=95.42 Aligned_cols=91 Identities=14% Similarity=0.198 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHH
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (494)
+..+...|..+++.|+|++|+.+|.+|++++|+++.+|+++|.+|..+++| ++|+..
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~-----------------------~eA~~~ 329 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEY-----------------------DQALAD 329 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCH-----------------------HHHHHH
Confidence 455678899999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHHHHHHHHHH
Q 011050 127 AEKLLNLQSNSMKSHLLKANALILLERYDMARDA 160 (494)
Q Consensus 127 ~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~ 160 (494)
+++|++++|++..++..++.++..+++++++...
T Consensus 330 l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 330 LKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988654
No 190
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.61 E-value=4.5e-08 Score=78.91 Aligned_cols=83 Identities=19% Similarity=0.157 Sum_probs=71.3
Q ss_pred cccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHH
Q 011050 81 PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDA 160 (494)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~ 160 (494)
+.++.++|.+++..|+| ++|+..++++++++|+++.+++.+|.+|..+|++++|+..
T Consensus 4 ~~~~~~~g~~~~~~~~~-----------------------~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 60 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLY-----------------------REAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQM 60 (111)
T ss_dssp HHHHHHHHHHHHTTTCH-----------------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCH-----------------------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHH
Confidence 45677889999999999 9999999999999999999999999999999999999999
Q ss_pred HHccccCCCCC------chhHHHHHHHHhhhh
Q 011050 161 ILSGLQVDPFS------NPLQASLQNLERTTA 186 (494)
Q Consensus 161 ~~~al~l~p~~------~~~~~~~~~~~~~~~ 186 (494)
|+++++++|++ ..+...+..+...+.
T Consensus 61 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~ 92 (111)
T 2l6j_A 61 CQQGLRYTSTAEHVAIRSKLQYRLELAQGAVG 92 (111)
T ss_dssp HHHHHTSCSSTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998 444444444444443
No 191
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=98.61 E-value=7.6e-08 Score=101.84 Aligned_cols=111 Identities=12% Similarity=0.071 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHH
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (494)
...+...|..+.+.|++++|+..|.++++.+|.+..+|..++.+|.+.|++ ++|++.
T Consensus 373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-----------------------~~A~~~ 429 (597)
T 2xpi_A 373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEH-----------------------DQAISA 429 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH-----------------------HHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-----------------------HHHHHH
Confidence 455666788888888888888888888888888888888888888888888 888888
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHH
Q 011050 127 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQN 180 (494)
Q Consensus 127 ~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~ 180 (494)
++++++.+|++..+++.+|.+|...|++++|++.|+++++++|.+..+...+..
T Consensus 430 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 483 (597)
T 2xpi_A 430 YTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGV 483 (597)
T ss_dssp HHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred HHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 888888888888888888888888888888888888888888887766554433
No 192
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.61 E-value=1.4e-08 Score=74.02 Aligned_cols=47 Identities=26% Similarity=0.506 Sum_probs=42.2
Q ss_pred CcccccccccccccCcEEc--CCCCc-ccHhhHHHhccCCCCCCCCCccc
Q 011050 200 TDDFDCTLCLKLLYEPITT--PCGHS-FCRSCLFQSMDRGNKCPLCRAVL 246 (494)
Q Consensus 200 ~~~~~C~iC~~~~~~Pv~~--~cgh~-fc~~Cl~~~~~~~~~CP~Cr~~~ 246 (494)
.....|++|++...+++.+ ||||. ||..|+..++..+..||+||.++
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i 54 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEI 54 (63)
T ss_dssp GGGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBC
T ss_pred CcCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchh
Confidence 3567899999999999877 99999 99999999988888999999986
No 193
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.61 E-value=3.4e-08 Score=84.81 Aligned_cols=104 Identities=12% Similarity=0.057 Sum_probs=92.8
Q ss_pred ChHHHHHHHHHHhccCCCCcccccChhHHHHHHH---hhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhcc-c-c
Q 011050 62 NFEEAISNYSRANNIKPGDPIVLGNRSSAYIRIS---QFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQ-S-N 136 (494)
Q Consensus 62 ~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~-p-~ 136 (494)
..+.+...|.+++..+|.+..+.+++|.++.+.. ++ .+++..++.+++.+ | +
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~-----------------------~~gI~lLe~ll~~~~p~~ 69 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDI-----------------------RKGIVLLEELLPKGSKEE 69 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHH-----------------------HHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHH-----------------------HHHHHHHHHHHhcCCccc
Confidence 3456777788888888889999999999999866 56 89999999999999 7 6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHhhhhhh
Q 011050 137 SMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASL 188 (494)
Q Consensus 137 ~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~ 188 (494)
..+++|++|.+|+.+|+|++|+.+++++|+++|+|..+....+.+++++.+.
T Consensus 70 ~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ie~~~~kd 121 (152)
T 1pc2_A 70 QRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKKD 121 (152)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Confidence 7999999999999999999999999999999999999999998888888653
No 194
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.59 E-value=6.9e-08 Score=79.57 Aligned_cols=85 Identities=16% Similarity=0.132 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHH
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (494)
...+...|..++..|++++|+..|.+++..+|+++.++.++|.++..+|++ ++|+..
T Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~A~~~ 102 (131)
T 2vyi_A 46 AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKH-----------------------VEAVAY 102 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHHH
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCH-----------------------HHHHHH
Confidence 566788999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHHHH
Q 011050 127 AEKLLNLQSNSMKSHLLKANALILLERY 154 (494)
Q Consensus 127 ~~~al~l~p~~~~a~~~~g~~~~~~~~~ 154 (494)
++++++++|++..+++.+|.++..+|++
T Consensus 103 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 103 YKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999988875
No 195
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.59 E-value=5.4e-08 Score=85.14 Aligned_cols=82 Identities=12% Similarity=0.073 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHH
Q 011050 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (494)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (494)
....+...|..++..|+|++|+.+|.++++++|+++.+|+++|.+|..+|++ ++|+.
T Consensus 44 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-----------------------~~A~~ 100 (164)
T 3sz7_A 44 NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADY-----------------------KGAKE 100 (164)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCH-----------------------HHHHH
Confidence 3567889999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHH
Q 011050 126 DAEKLLNLQSNSMKSHLLKANALIL 150 (494)
Q Consensus 126 ~~~~al~l~p~~~~a~~~~g~~~~~ 150 (494)
.++++++++|++..+|+.+|.+...
T Consensus 101 ~~~~al~~~p~~~~~~~~~~l~~~~ 125 (164)
T 3sz7_A 101 AYEKGIEAEGNGGSDAMKRGLETTK 125 (164)
T ss_dssp HHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHH
Confidence 9999999999999998888876543
No 196
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.58 E-value=8.5e-08 Score=75.98 Aligned_cols=69 Identities=23% Similarity=0.228 Sum_probs=65.4
Q ss_pred ccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhccccchH-HHHHHHHHHHHHHHHHHHHHHHH
Q 011050 84 LGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMK-SHLLKANALILLERYDMARDAIL 162 (494)
Q Consensus 84 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~-a~~~~g~~~~~~~~~~~A~~~~~ 162 (494)
..++|.+++..|+| ++|+..++++++++|+++. +++.+|.+|..+|++++|+..|+
T Consensus 3 ~~~~a~~~~~~~~~-----------------------~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~ 59 (99)
T 2kc7_A 3 QLKTIKELINQGDI-----------------------ENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQ 59 (99)
T ss_dssp THHHHHHHHHHTCH-----------------------HHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCH-----------------------HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35678899999999 9999999999999999999 99999999999999999999999
Q ss_pred ccccCCCCCchhH
Q 011050 163 SGLQVDPFSNPLQ 175 (494)
Q Consensus 163 ~al~l~p~~~~~~ 175 (494)
++++++|++..+.
T Consensus 60 ~al~~~p~~~~~~ 72 (99)
T 2kc7_A 60 SAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHCTTSTHHH
T ss_pred HHHhcCCCcHHHH
Confidence 9999999999876
No 197
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.57 E-value=7.8e-08 Score=79.80 Aligned_cols=84 Identities=11% Similarity=0.065 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHH
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (494)
...+...|..++..|++++|+..|.++++.+|.++.++.++|.++..+|++ ++|+..
T Consensus 50 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~-----------------------~~A~~~ 106 (133)
T 2lni_A 50 AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDY-----------------------TKAMDV 106 (133)
T ss_dssp HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhH-----------------------HHHHHH
Confidence 567888999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHHH
Q 011050 127 AEKLLNLQSNSMKSHLLKANALILLER 153 (494)
Q Consensus 127 ~~~al~l~p~~~~a~~~~g~~~~~~~~ 153 (494)
++++++++|.+..+++.+|.++..+|+
T Consensus 107 ~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 107 YQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 999999999999999999999987763
No 198
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.56 E-value=6e-08 Score=94.43 Aligned_cols=105 Identities=14% Similarity=0.165 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCC------cccccChhHHHHHHHhhhccCCCCCccccccCCCCCchh
Q 011050 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD------PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTH 119 (494)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (494)
.+..+...|..+.. |+|++|+.+|.+|+++.|.. ..++.++|.+|..+|+|
T Consensus 115 ~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~---------------------- 171 (307)
T 2ifu_A 115 AAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKF---------------------- 171 (307)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH----------------------
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCH----------------------
Confidence 35667778888888 99999999999999887654 46788899999999999
Q ss_pred HHHHHHHHHHHhhccccc------hHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhH
Q 011050 120 AELALKDAEKLLNLQSNS------MKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQ 175 (494)
Q Consensus 120 ~~~a~~~~~~al~l~p~~------~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~ 175 (494)
++|+..+++++.+.|.+ ..+++.+|.++..+|++++|+..|++++ ++|.+....
T Consensus 172 -~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~ 231 (307)
T 2ifu_A 172 -DEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSE 231 (307)
T ss_dssp -HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSH
T ss_pred -HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCH
Confidence 99999999999887644 3477788888888899999999999999 999776543
No 199
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.56 E-value=6.8e-08 Score=80.36 Aligned_cols=81 Identities=11% Similarity=0.006 Sum_probs=72.5
Q ss_pred ccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHH
Q 011050 82 IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAI 161 (494)
Q Consensus 82 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~ 161 (494)
..++.+|.+++..|++ .+|+..++++++++|+++.+|+.+|.++..+|++++|+..|
T Consensus 18 ~~~~~~g~~~~~~g~~-----------------------~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 74 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANL-----------------------AEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIAL 74 (121)
T ss_dssp SCHHHHHHHHHHTTCH-----------------------HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCH-----------------------HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4567789999999999 99999999999999999999999999999999999999999
Q ss_pred HccccCCCCCchhHHHHHHHHhhh
Q 011050 162 LSGLQVDPFSNPLQASLQNLERTT 185 (494)
Q Consensus 162 ~~al~l~p~~~~~~~~~~~~~~~~ 185 (494)
+++++++|++..++..+..+-...
T Consensus 75 ~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 75 NHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHc
Confidence 999999999998776665444333
No 200
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.56 E-value=6.1e-08 Score=97.48 Aligned_cols=102 Identities=18% Similarity=0.236 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCc----ccccChhHHHHHHHhhhccCCCCCccccccCCCCCchh
Q 011050 44 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP----IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTH 119 (494)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (494)
...+..+...|..++..|+|++|+..|.+++++.|+++ .+|.++|.+|...|++
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~---------------------- 102 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDY---------------------- 102 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCH----------------------
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCH----------------------
Confidence 55678889999999999999999999999999999987 5899999999999999
Q ss_pred HHHHHHHHHHHhhc------cccchHHHHHHHHHHHHHHHHHHHHHHHHccccCC
Q 011050 120 AELALKDAEKLLNL------QSNSMKSHLLKANALILLERYDMARDAILSGLQVD 168 (494)
Q Consensus 120 ~~~a~~~~~~al~l------~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~ 168 (494)
++|+..+++++++ +|....+++.+|.+|..+|++++|+..|.+++++.
T Consensus 103 -~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 156 (411)
T 4a1s_A 103 -NKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLA 156 (411)
T ss_dssp -HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 9999999999998 68889999999999999999999999999999883
No 201
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.55 E-value=7.5e-08 Score=90.72 Aligned_cols=101 Identities=17% Similarity=0.042 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcc--------CCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCC
Q 011050 44 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNI--------KPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLD 115 (494)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (494)
...+..+...|..++..|++++|+..|.+++.+ +|....++.++|.+|..+|++
T Consensus 82 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~------------------ 143 (283)
T 3edt_B 82 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKA------------------ 143 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCH------------------
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCH------------------
Confidence 345667888999999999999999999999998 577789999999999999999
Q ss_pred CchhHHHHHHHHHHHhhc--------cccchHHHHHHHHHHHHHHHHHHHHHHHHccccC
Q 011050 116 PTTHAELALKDAEKLLNL--------QSNSMKSHLLKANALILLERYDMARDAILSGLQV 167 (494)
Q Consensus 116 ~~~~~~~a~~~~~~al~l--------~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 167 (494)
++|+..+++++++ +|....+++.+|.+|..+|++++|+..|.+++++
T Consensus 144 -----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 144 -----EEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp -----HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999 8888999999999999999999999999999986
No 202
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.55 E-value=1.3e-07 Score=75.66 Aligned_cols=83 Identities=10% Similarity=0.069 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHH
Q 011050 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 124 (494)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 124 (494)
.....+...|..++..|+|++|+..|.++++++|+++.+|.++|.+|..+|++ ++|+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~-----------------------~~A~ 61 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRT-----------------------DDAI 61 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCH-----------------------HHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH-----------------------HHHH
Confidence 34677889999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHhhccccchHH--HHHHHHHHHH
Q 011050 125 KDAEKLLNLQSNSMKS--HLLKANALIL 150 (494)
Q Consensus 125 ~~~~~al~l~p~~~~a--~~~~g~~~~~ 150 (494)
..+++++++.|..... ...+...+..
T Consensus 62 ~~~~~al~l~~~~~~~~~~~~l~~~l~~ 89 (100)
T 3ma5_A 62 DTYAQGIEVAREEGTQKDLSELQDAKLK 89 (100)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhcCCchhHHHHHHHHHHH
Confidence 9999999998765433 3333444433
No 203
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.54 E-value=4.8e-08 Score=79.00 Aligned_cols=46 Identities=20% Similarity=0.435 Sum_probs=40.3
Q ss_pred cccccccccccccCc------------------EEcCCCCcccHhhHHHhccCCCCCCCCCccc
Q 011050 201 DDFDCTLCLKLLYEP------------------ITTPCGHSFCRSCLFQSMDRGNKCPLCRAVL 246 (494)
Q Consensus 201 ~~~~C~iC~~~~~~P------------------v~~~cgh~fc~~Cl~~~~~~~~~CP~Cr~~~ 246 (494)
.+..|.||++.|.++ +.++|||.||..||..|+.....||+||..+
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~ 99 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 99 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcc
Confidence 456799999998876 3479999999999999999888999999975
No 204
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.54 E-value=1.1e-07 Score=92.57 Aligned_cols=117 Identities=8% Similarity=-0.081 Sum_probs=104.1
Q ss_pred HHHHHHHHHHH----HHh---cChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchh
Q 011050 47 VFDLVQKGNRA----FRE---SNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTH 119 (494)
Q Consensus 47 ~~~~~~~g~~~----~~~---~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (494)
...|..++..+ ... +++++++..+.++++.+|++..+|++|+.+...++.+
T Consensus 103 y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~---------------------- 160 (306)
T 3dra_A 103 YQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLH---------------------- 160 (306)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCT----------------------
T ss_pred HHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc----------------------
Confidence 34566666666 444 7899999999999999999999999999999999988
Q ss_pred HH--HHHHHHHHHhhccccchHHHHHHHHHHHHHHH------HHHHHHHHHccccCCCCCchhHHHHHHHHhhhh
Q 011050 120 AE--LALKDAEKLLNLQSNSMKSHLLKANALILLER------YDMARDAILSGLQVDPFSNPLQASLQNLERTTA 186 (494)
Q Consensus 120 ~~--~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~------~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~ 186 (494)
+ ++++.++++++.||.+..||..++.++..+++ ++++++.+.+++.++|+|.+++..+.-+-....
T Consensus 161 -~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~ 234 (306)
T 3dra_A 161 -NDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFD 234 (306)
T ss_dssp -TCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTT
T ss_pred -ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcC
Confidence 6 99999999999999999999999999999887 999999999999999999999988777655443
No 205
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.51 E-value=1.6e-07 Score=91.39 Aligned_cols=114 Identities=7% Similarity=-0.139 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHhc--ChHHHHHHHHHHhccCCCCcccccChhHHH----HHH---HhhhccCCCCCccccccCCCCCc
Q 011050 47 VFDLVQKGNRAFRES--NFEEAISNYSRANNIKPGDPIVLGNRSSAY----IRI---SQFLKHRPPSASEYRPLNGLDPT 117 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~--~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~ 117 (494)
...+..+|..+...| ++++|+..+.+++..+|++..+|.+|+.++ ..+ +++
T Consensus 67 ~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~-------------------- 126 (306)
T 3dra_A 67 YTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP-------------------- 126 (306)
T ss_dssp HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT--------------------
T ss_pred HHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH--------------------
Confidence 455777888888777 888999999999999999999999988888 333 334
Q ss_pred hhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHH--HHHHHHHccccCCCCCchhHHHHHHHHh
Q 011050 118 THAELALKDAEKLLNLQSNSMKSHLLKANALILLERYD--MARDAILSGLQVDPFSNPLQASLQNLER 183 (494)
Q Consensus 118 ~~~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~--~A~~~~~~al~l~p~~~~~~~~~~~~~~ 183 (494)
.+++..++++++.+|.+..+|+.++.++..+|.++ ++++.+.++++.||.|..++.....+-.
T Consensus 127 ---~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~ 191 (306)
T 3dra_A 127 ---YREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLF 191 (306)
T ss_dssp ---HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 89999999999999999999999999999999998 9999999999999999988876554433
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.51 E-value=1.2e-07 Score=82.23 Aligned_cols=72 Identities=22% Similarity=0.274 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHHhcCh----------HHHHHHHHHHhccCCCCcccccChhHHHHHHH-----------hhhccCC
Q 011050 44 YTHVFDLVQKGNRAFRESNF----------EEAISNYSRANNIKPGDPIVLGNRSSAYIRIS-----------QFLKHRP 102 (494)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~----------~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~-----------~~~~~~~ 102 (494)
+..+..+...|..+...+++ ++|+..|.+||+++|+++.+|+++|.+|..+| +|
T Consensus 33 P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~----- 107 (158)
T 1zu2_A 33 PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNF----- 107 (158)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHH-----
T ss_pred CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccH-----
Confidence 33567788899988888775 59999999999999999999999999999986 67
Q ss_pred CCCccccccCCCCCchhHHHHHHHHHHHhhccccch
Q 011050 103 PSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSM 138 (494)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~ 138 (494)
++|+..+++|++++|++.
T Consensus 108 ------------------~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 108 ------------------DLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp ------------------HHHHHHHHHHHHHCTTCH
T ss_pred ------------------HHHHHHHHHHHHhCCCCH
Confidence 999999999999999984
No 207
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.50 E-value=7.5e-08 Score=92.34 Aligned_cols=104 Identities=14% Similarity=0.106 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcc--------CCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCC
Q 011050 44 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNI--------KPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLD 115 (494)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (494)
...+..+...|..++..|++++|+..|.+++.+ .|....++.++|.+|...|++
T Consensus 150 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~------------------ 211 (311)
T 3nf1_A 150 PDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKF------------------ 211 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCH------------------
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCH------------------
Confidence 344567788999999999999999999999998 677778999999999999999
Q ss_pred CchhHHHHHHHHHHHhhc-------------------------------------------------cccchHHHHHHHH
Q 011050 116 PTTHAELALKDAEKLLNL-------------------------------------------------QSNSMKSHLLKAN 146 (494)
Q Consensus 116 ~~~~~~~a~~~~~~al~l-------------------------------------------------~p~~~~a~~~~g~ 146 (494)
++|+..+++++++ +|....+++.+|.
T Consensus 212 -----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~ 286 (311)
T 3nf1_A 212 -----KQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGA 286 (311)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHH
Confidence 9999999999974 4777889999999
Q ss_pred HHHHHHHHHHHHHHHHccccCCCC
Q 011050 147 ALILLERYDMARDAILSGLQVDPF 170 (494)
Q Consensus 147 ~~~~~~~~~~A~~~~~~al~l~p~ 170 (494)
+|..+|++++|+..|++++++.|.
T Consensus 287 ~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 287 LYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHCCCHHHHHHHHHHHHHHhhc
Confidence 999999999999999999988764
No 208
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.50 E-value=1.2e-07 Score=91.51 Aligned_cols=103 Identities=20% Similarity=0.252 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCc----ccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHH
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP----IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAEL 122 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (494)
...+...|..++..|+|++|+..|.++++.+|+++ .++.++|.++...|++ ++
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~-----------------------~~ 61 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDY-----------------------AK 61 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCH-----------------------HH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCH-----------------------HH
Confidence 56788899999999999999999999999999984 7888999999999999 99
Q ss_pred HHHHHHHHhhc------cccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCc
Q 011050 123 ALKDAEKLLNL------QSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSN 172 (494)
Q Consensus 123 a~~~~~~al~l------~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~ 172 (494)
|+..+++++.+ .|....+++.+|.+|..+|++++|+..+.+++++.+...
T Consensus 62 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 117 (338)
T 3ro2_A 62 ALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN 117 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhc
Confidence 99999999988 567788999999999999999999999999999877543
No 209
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.50 E-value=2.8e-07 Score=90.41 Aligned_cols=113 Identities=10% Similarity=-0.043 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHHHHHhc--ChHHHHHHHHHHhccCCCCcccccChhHHHHHHHh-hhccCCCCCccccccCCCCCchhH
Q 011050 44 YTHVFDLVQKGNRAFRES--NFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQ-FLKHRPPSASEYRPLNGLDPTTHA 120 (494)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~--~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 120 (494)
++....|..++..+...+ ++++++.++.++++.+|.|..+|++|+.+...++. +
T Consensus 105 PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~----------------------- 161 (331)
T 3dss_A 105 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAP----------------------- 161 (331)
T ss_dssp TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCH-----------------------
T ss_pred CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCH-----------------------
Confidence 344567778888888777 48999999999999999999999999999988887 5
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHH--------------HHHHHHHHHHHccccCCCCCchhHHHHH
Q 011050 121 ELALKDAEKLLNLQSNSMKSHLLKANALILL--------------ERYDMARDAILSGLQVDPFSNPLQASLQ 179 (494)
Q Consensus 121 ~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~--------------~~~~~A~~~~~~al~l~p~~~~~~~~~~ 179 (494)
+++++.+.++++.+|.+..||..++.++..+ +.++++++.+.+++.++|+|.+++.-+.
T Consensus 162 ~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r 234 (331)
T 3dss_A 162 AEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHR 234 (331)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 8999999999999999999999999999887 7899999999999999999999987543
No 210
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.50 E-value=9.9e-08 Score=80.13 Aligned_cols=87 Identities=10% Similarity=-0.004 Sum_probs=76.9
Q ss_pred ccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHH
Q 011050 75 NIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERY 154 (494)
Q Consensus 75 ~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~ 154 (494)
..+|.++..+.++|.+++..|+| ++|+..+++++.++|+++.+++.+|.+|..+|++
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~-----------------------~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~ 59 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKY-----------------------PEAAACYGRAITRNPLVAVYYTNRALCYLKMQQP 59 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCH-----------------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred CCccccHHHHHHHHHHHHHhCcH-----------------------HHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCH
Confidence 45677889999999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHHHccccCCCCCchhHHHHHHHHhh
Q 011050 155 DMARDAILSGLQVDPFSNPLQASLQNLERT 184 (494)
Q Consensus 155 ~~A~~~~~~al~l~p~~~~~~~~~~~~~~~ 184 (494)
++|+..|+++++++|++..++..+..+-..
T Consensus 60 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 89 (137)
T 3q49_B 60 EQALADCRRALELDGQSVKAHFFLGQCQLE 89 (137)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 999999999999999998776665554433
No 211
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.49 E-value=1.7e-07 Score=96.12 Aligned_cols=124 Identities=11% Similarity=-0.003 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHH
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (494)
...+...|..+...|++++|+..|.+|++.+|+++.++.++|.+|...+......... ............+.|+..
T Consensus 247 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~----~~~~~~~~~~~~~~A~~~ 322 (472)
T 4g1t_A 247 TDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLREN----GMYGKRKLLELIGHAVAH 322 (472)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHH----HHHHHHHHHhhHHHHHHH
Confidence 4456778999999999999999999999999999999999999987665431111100 000000011222789999
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchh
Q 011050 127 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPL 174 (494)
Q Consensus 127 ~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~ 174 (494)
++++++++|.+..+++.+|.+|..+|++++|+..|+++++++|++...
T Consensus 323 ~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~ 370 (472)
T 4g1t_A 323 LKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAK 370 (472)
T ss_dssp HHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHH
Confidence 999999999999999999999999999999999999999999876654
No 212
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.49 E-value=8.2e-08 Score=82.11 Aligned_cols=104 Identities=26% Similarity=0.246 Sum_probs=91.8
Q ss_pred hHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCc------ccccChhHHHHHHHhhhccCCCCCccccccCCCCC
Q 011050 43 RYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP------IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDP 116 (494)
Q Consensus 43 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (494)
....+..+...|..++..|+|++|+..|.+++++.+... .++.++|.++...|++
T Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~------------------- 65 (164)
T 3ro3_A 5 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEF------------------- 65 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH-------------------
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCH-------------------
Confidence 345577889999999999999999999999999876543 4889999999999999
Q ss_pred chhHHHHHHHHHHHhhccccc------hHHHHHHHHHHHHHHHHHHHHHHHHccccCCC
Q 011050 117 TTHAELALKDAEKLLNLQSNS------MKSHLLKANALILLERYDMARDAILSGLQVDP 169 (494)
Q Consensus 117 ~~~~~~a~~~~~~al~l~p~~------~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p 169 (494)
++|+..+++++++.+.. ..+++.+|.++..+|++++|+..+++++++.+
T Consensus 66 ----~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 120 (164)
T 3ro3_A 66 ----ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 120 (164)
T ss_dssp ----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 99999999999987553 67899999999999999999999999998754
No 213
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.49 E-value=6.6e-08 Score=93.28 Aligned_cols=101 Identities=15% Similarity=0.042 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHhcc-------CCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCc
Q 011050 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNI-------KPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPT 117 (494)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~-------~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (494)
..+..+...|..++..|+|++|+.+|.+|++. .+....+|.|+|.+|..+|+|
T Consensus 153 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y-------------------- 212 (293)
T 3u3w_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRY-------------------- 212 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCH--------------------
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHH--------------------
Confidence 34557889999999999999999999999953 233346899999999999999
Q ss_pred hhHHHHHHHHHHHhhccccc------hHHHHHHHHHHHHHHH-HHHHHHHHHccccCC
Q 011050 118 THAELALKDAEKLLNLQSNS------MKSHLLKANALILLER-YDMARDAILSGLQVD 168 (494)
Q Consensus 118 ~~~~~a~~~~~~al~l~p~~------~~a~~~~g~~~~~~~~-~~~A~~~~~~al~l~ 168 (494)
++|+..+++++++.+.. ..+|+.+|.+|..+|+ +++|+..|++|+.+.
T Consensus 213 ---~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 213 ---EESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp ---HHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 99999999999987654 7899999999999995 699999999998754
No 214
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.48 E-value=3.4e-08 Score=83.72 Aligned_cols=49 Identities=35% Similarity=0.872 Sum_probs=44.2
Q ss_pred CCcccccccccccccCc-------EEcCCCCcccHhhHHHhccCCCCCCCCCcccc
Q 011050 199 RTDDFDCTLCLKLLYEP-------ITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 247 (494)
Q Consensus 199 ~~~~~~C~iC~~~~~~P-------v~~~cgh~fc~~Cl~~~~~~~~~CP~Cr~~~~ 247 (494)
......|+||++.+.+| +.++|||.||..||..|+.....||+||..+.
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 124 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 124 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCC
Confidence 34678899999999987 88999999999999999998899999999874
No 215
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.47 E-value=5.1e-08 Score=74.56 Aligned_cols=42 Identities=33% Similarity=0.803 Sum_probs=37.8
Q ss_pred ccccccccccccCcEEcCCCCc-ccHhhHHHhccCCCCCCCCCcccc
Q 011050 202 DFDCTLCLKLLYEPITTPCGHS-FCRSCLFQSMDRGNKCPLCRAVLF 247 (494)
Q Consensus 202 ~~~C~iC~~~~~~Pv~~~cgh~-fc~~Cl~~~~~~~~~CP~Cr~~~~ 247 (494)
...|+||++.+.+|+.+||||. ||..|+..+. .||.||..+.
T Consensus 18 ~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~----~CP~Cr~~i~ 60 (79)
T 2yho_A 18 AMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ----SCPVCRSRVE 60 (79)
T ss_dssp HTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS----BCTTTCCBCC
T ss_pred CCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC----cCCCCCchhh
Confidence 5679999999999999999999 9999998763 8999999873
No 216
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.47 E-value=3.5e-07 Score=90.14 Aligned_cols=95 Identities=17% Similarity=0.046 Sum_probs=83.9
Q ss_pred hcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHh-hhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhccccch
Q 011050 60 ESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQ-FLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSM 138 (494)
Q Consensus 60 ~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~ 138 (494)
.+..++|+..++++|.++|++..+|..|+.++..++. + ++++..+++++..+|++.
T Consensus 67 ~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l-----------------------~eEL~~~~~~L~~nPKny 123 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSL-----------------------EDELRLMNEFAVQNLKSY 123 (349)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCH-----------------------HHHHHHHHHHHHTTCCCH
T ss_pred CCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhH-----------------------HHHHHHHHHHHHhCCCcH
Confidence 3445789999999999999999999999999998884 8 899999999999999999
Q ss_pred HHHHHHHHHHHHH-H-HHHHHHHHHHccccCCCCCchhHHH
Q 011050 139 KSHLLKANALILL-E-RYDMARDAILSGLQVDPFSNPLQAS 177 (494)
Q Consensus 139 ~a~~~~g~~~~~~-~-~~~~A~~~~~~al~l~p~~~~~~~~ 177 (494)
.+|..++.++..+ + +++++++.+.++++++|.|..++.-
T Consensus 124 ~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~ 164 (349)
T 3q7a_A 124 QVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAY 164 (349)
T ss_dssp HHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHH
Confidence 9999999999887 7 8899999999999999998877643
No 217
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.45 E-value=3.1e-07 Score=90.52 Aligned_cols=121 Identities=9% Similarity=-0.065 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHh-c-ChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHH
Q 011050 49 DLVQKGNRAFRE-S-NFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (494)
Q Consensus 49 ~~~~~g~~~~~~-~-~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (494)
.|..++..+... + ++++++..+.++++.+|++..+|.+|+.+...++.+- . .......++++.
T Consensus 125 aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~----~-----------~~~~~~~eELe~ 189 (349)
T 3q7a_A 125 VWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLG----R-----------ISEAQWGSELDW 189 (349)
T ss_dssp HHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTT----C-----------CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccc----c-----------cchhhHHHHHHH
Confidence 344444444443 4 5555555555555555555555555555555555550 0 001111389999
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHHH-------HHHHHHHHHccccCCCCCchhHHHHHHHHhh
Q 011050 127 AEKLLNLQSNSMKSHLLKANALILLER-------YDMARDAILSGLQVDPFSNPLQASLQNLERT 184 (494)
Q Consensus 127 ~~~al~l~p~~~~a~~~~g~~~~~~~~-------~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~ 184 (494)
++++++.+|.+..||..++.++..+++ ++++++.+.+++.++|+|..++..+.-+-..
T Consensus 190 ~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~ 254 (349)
T 3q7a_A 190 CNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKH 254 (349)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 999999999999999999999988886 7999999999999999999999876665443
No 218
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.45 E-value=2e-07 Score=89.14 Aligned_cols=113 Identities=12% Similarity=-0.062 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCC--cccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHH
Q 011050 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD--PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAEL 122 (494)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (494)
... ..+..|..+++.++|++|+..|+++....+.. ..+++++|.++..+|++ .+
T Consensus 134 ~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~-----------------------~e 189 (282)
T 4f3v_A 134 EHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALF-----------------------TE 189 (282)
T ss_dssp HHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCH-----------------------HH
T ss_pred chH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCH-----------------------HH
Confidence 334 77889999999999999999999887764221 35899999999999999 99
Q ss_pred HHHHHHHHhhcc--cc-chHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHH
Q 011050 123 ALKDAEKLLNLQ--SN-SMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLE 182 (494)
Q Consensus 123 a~~~~~~al~l~--p~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~ 182 (494)
|+..+++++.-. |. ...+++++|.++..+|+.++|...|++++..+|+ ..+..++....
T Consensus 190 Al~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~~~ 251 (282)
T 4f3v_A 190 AERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKDPS 251 (282)
T ss_dssp HHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHCTT
T ss_pred HHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhCCC
Confidence 999999998654 65 7789999999999999999999999999999999 88777776544
No 219
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.45 E-value=1.6e-07 Score=69.53 Aligned_cols=46 Identities=26% Similarity=0.724 Sum_probs=39.8
Q ss_pred CCCcccccccccccccCcEEcCCCCc-ccHhhHHHhccCCCCCCCCCcccc
Q 011050 198 ERTDDFDCTLCLKLLYEPITTPCGHS-FCRSCLFQSMDRGNKCPLCRAVLF 247 (494)
Q Consensus 198 ~~~~~~~C~iC~~~~~~Pv~~~cgh~-fc~~Cl~~~~~~~~~CP~Cr~~~~ 247 (494)
...+...|.||++...+++.+||||. ||..|+.. ...||+||..+.
T Consensus 11 ~~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~ 57 (68)
T 2ea5_A 11 SEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQ 57 (68)
T ss_dssp SCCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH----CSSCTTTCCCCC
T ss_pred cCCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc----CCCCCCCCcchh
Confidence 34457889999999999999999999 99999984 368999999873
No 220
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.45 E-value=1e-07 Score=82.93 Aligned_cols=73 Identities=12% Similarity=0.105 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHhcc-------CCCCcccc----cChhHHHHHHHhhhccCCCCCccccccCCC
Q 011050 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNI-------KPGDPIVL----GNRSSAYIRISQFLKHRPPSASEYRPLNGL 114 (494)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~-------~p~~~~~~----~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (494)
.+..|..+|..+.+.|+|++|+.+|++||++ +|+++.+| +++|.++..+|+|
T Consensus 56 ~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~----------------- 118 (159)
T 2hr2_A 56 DAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRG----------------- 118 (159)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCH-----------------
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCH-----------------
Confidence 4568999999999999999999999999999 99999999 9999999999999
Q ss_pred CCchhHHHHHHHHHHHhhccccchHHH
Q 011050 115 DPTTHAELALKDAEKLLNLQSNSMKSH 141 (494)
Q Consensus 115 ~~~~~~~~a~~~~~~al~l~p~~~~a~ 141 (494)
++|+..|++|++++|++.-.+
T Consensus 119 ------eEAl~~y~kAlel~p~d~~~~ 139 (159)
T 2hr2_A 119 ------AEAMPEFKKVVEMIEERKGET 139 (159)
T ss_dssp ------HHHHHHHHHHHHHHHHCCSCC
T ss_pred ------HHHHHHHHHHHhcCCCcHHHH
Confidence 999999999999999875443
No 221
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.44 E-value=1.5e-07 Score=93.85 Aligned_cols=103 Identities=19% Similarity=0.239 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCc----ccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHH
Q 011050 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP----IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAE 121 (494)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (494)
.+..+...|..++..|+|++|+..|.++++..|.++ .++.++|.+|+..|++ .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~-----------------------~ 64 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDY-----------------------A 64 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCH-----------------------H
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCH-----------------------H
Confidence 367788999999999999999999999999999984 6889999999999999 9
Q ss_pred HHHHHHHHHhhc------cccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCC
Q 011050 122 LALKDAEKLLNL------QSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFS 171 (494)
Q Consensus 122 ~a~~~~~~al~l------~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~ 171 (494)
+|+..+++++.+ .|....+++.+|.+|..+|++++|+..+.+++++.|..
T Consensus 65 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 120 (406)
T 3sf4_A 65 KALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL 120 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Confidence 999999999988 56778899999999999999999999999999987754
No 222
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.43 E-value=1.9e-07 Score=90.01 Aligned_cols=100 Identities=14% Similarity=0.064 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHh---ccCCCCc----ccccChhHHHHHHHhhhccCCCCCccccccCCCCCch
Q 011050 46 HVFDLVQKGNRAFRESNFEEAISNYSRAN---NIKPGDP----IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTT 118 (494)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al---~~~p~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (494)
.+..+...|..++..|+|++|+..|.+|+ +..|++. .++.|+|.+|..+|+|
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y--------------------- 212 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRY--------------------- 212 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCH---------------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhH---------------------
Confidence 46678899999999999999999999999 4455543 6899999999999999
Q ss_pred hHHHHHHHHHHHhhcccc------chHHHHHHHHHHHHHHHHHHH-HHHHHccccCC
Q 011050 119 HAELALKDAEKLLNLQSN------SMKSHLLKANALILLERYDMA-RDAILSGLQVD 168 (494)
Q Consensus 119 ~~~~a~~~~~~al~l~p~------~~~a~~~~g~~~~~~~~~~~A-~~~~~~al~l~ 168 (494)
++|+..+++++++.++ ...+|+.+|.+|..+|++++| ..+|++|+.+.
T Consensus 213 --~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 213 --EESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp --HHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 9999999999998754 378999999999999999999 77899998764
No 223
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.43 E-value=2.3e-07 Score=89.46 Aligned_cols=95 Identities=12% Similarity=-0.002 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHH
Q 011050 49 DLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAE 128 (494)
Q Consensus 49 ~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 128 (494)
.....+..+...++++.|+..|.+++..+|+++.++.++|.++...|++ ++|+..+.
T Consensus 187 ~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~-----------------------~~A~~~l~ 243 (287)
T 3qou_A 187 QGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRN-----------------------EEALELLF 243 (287)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHHHHH
T ss_pred HHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccH-----------------------HHHHHHHH
Confidence 3444455566667777778888888999999999999999999999999 99999999
Q ss_pred HHhhccccc--hHHHHHHHHHHHHHHHHHHHHHHHHcccc
Q 011050 129 KLLNLQSNS--MKSHLLKANALILLERYDMARDAILSGLQ 166 (494)
Q Consensus 129 ~al~l~p~~--~~a~~~~g~~~~~~~~~~~A~~~~~~al~ 166 (494)
++++.+|++ ..++..+|.+|..+|+.++|+..|++++.
T Consensus 244 ~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 244 GHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 999999999 89999999999999999999999998864
No 224
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.42 E-value=3.3e-07 Score=87.71 Aligned_cols=106 Identities=12% Similarity=0.042 Sum_probs=96.3
Q ss_pred chhhHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcc--------CCCCcccccChhHHHHHHHhhhccCCCCCcccccc
Q 011050 40 PWDRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNI--------KPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPL 111 (494)
Q Consensus 40 ~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 111 (494)
..+....+..+...|..++..|+|++|+..|.+++++ .|....++.++|.+|...|++
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-------------- 85 (311)
T 3nf1_A 20 GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKY-------------- 85 (311)
T ss_dssp CTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCH--------------
T ss_pred CCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCH--------------
Confidence 3455566889999999999999999999999999995 677789999999999999999
Q ss_pred CCCCCchhHHHHHHHHHHHhhc--------cccchHHHHHHHHHHHHHHHHHHHHHHHHccccCC
Q 011050 112 NGLDPTTHAELALKDAEKLLNL--------QSNSMKSHLLKANALILLERYDMARDAILSGLQVD 168 (494)
Q Consensus 112 ~~~~~~~~~~~a~~~~~~al~l--------~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~ 168 (494)
++|+..+++++.+ +|....+++.+|.+|..+|++++|+..|.+++++.
T Consensus 86 ---------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 141 (311)
T 3nf1_A 86 ---------KDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 141 (311)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 9999999999988 47788899999999999999999999999999874
No 225
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.42 E-value=2.5e-07 Score=92.57 Aligned_cols=102 Identities=10% Similarity=0.037 Sum_probs=88.8
Q ss_pred hHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCc-------ccccChhHHHHHHHhhhccCCCCCccccccCCCC
Q 011050 43 RYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP-------IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLD 115 (494)
Q Consensus 43 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~-------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (494)
....+..+...|..++..|++++|+.+|.+|+++.+... .++.++|.+|..+|+|
T Consensus 139 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~------------------ 200 (383)
T 3ulq_A 139 RIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQY------------------ 200 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCH------------------
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCH------------------
Confidence 344577888999999999999999999999999855443 5888999999999999
Q ss_pred CchhHHHHHHHHHHHhhccccc------hHHHHHHHHHHHHHHHHHHHHHHHHccccC
Q 011050 116 PTTHAELALKDAEKLLNLQSNS------MKSHLLKANALILLERYDMARDAILSGLQV 167 (494)
Q Consensus 116 ~~~~~~~a~~~~~~al~l~p~~------~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 167 (494)
++|+..+++|+++.+.. ..+++.+|.+|..+|++++|+..|++++++
T Consensus 201 -----~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 253 (383)
T 3ulq_A 201 -----EDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAV 253 (383)
T ss_dssp -----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999986543 358999999999999999999999999994
No 226
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.41 E-value=4.6e-07 Score=85.93 Aligned_cols=106 Identities=17% Similarity=0.107 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHH----HHhhhccCCCCCccccccCCCCCchhHH
Q 011050 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIR----ISQFLKHRPPSASEYRPLNGLDPTTHAE 121 (494)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (494)
.+..+...|..++..|++++|+..|.++++ |+++.++.++|.+|.. .+++ +
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~-----------------------~ 59 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNL-----------------------K 59 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCH-----------------------H
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCH-----------------------H
Confidence 456788899999999999999999999998 7788899999999998 8888 9
Q ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHH----HHHHHHHHHHHHccccCCCCCchhHHHHHH
Q 011050 122 LALKDAEKLLNLQSNSMKSHLLKANALIL----LERYDMARDAILSGLQVDPFSNPLQASLQN 180 (494)
Q Consensus 122 ~a~~~~~~al~l~p~~~~a~~~~g~~~~~----~~~~~~A~~~~~~al~l~p~~~~~~~~~~~ 180 (494)
+|+..++++++++ ++.+++.+|.+|.. .+++++|+..|+++++++ +..+...+..
T Consensus 60 ~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~ 118 (273)
T 1ouv_A 60 KAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGG 118 (273)
T ss_dssp HHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHH
T ss_pred HHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHH
Confidence 9999999999885 78899999999998 999999999999998874 4444444433
No 227
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.40 E-value=4e-07 Score=89.25 Aligned_cols=116 Identities=6% Similarity=-0.100 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHhcC----------hHHHHHHHHHHhccCCCCcccccChhHHHHHHHh--hhccCCCCCccccccCCC
Q 011050 47 VFDLVQKGNRAFRESN----------FEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQ--FLKHRPPSASEYRPLNGL 114 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~----------~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~ 114 (494)
...|.-++..+...+. +++++..+..++..+|+++.+|++|+.++..++. +
T Consensus 64 ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~----------------- 126 (331)
T 3dss_A 64 ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW----------------- 126 (331)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCH-----------------
T ss_pred HHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccH-----------------
Confidence 4556666666655444 7899999999999999999999999999988884 7
Q ss_pred CCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHH-HHHHHHHHHccccCCCCCchhHHHHHHHHhhh
Q 011050 115 DPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLER-YDMARDAILSGLQVDPFSNPLQASLQNLERTT 185 (494)
Q Consensus 115 ~~~~~~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~-~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~ 185 (494)
.+++..+.++++.||.+..||..++.++...|. ++++++++.+++..+|.|..++.....+-..+
T Consensus 127 ------~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l 192 (331)
T 3dss_A 127 ------ARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL 192 (331)
T ss_dssp ------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence 899999999999999999999999999999998 59999999999999999999988777665544
No 228
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.40 E-value=1.5e-07 Score=83.34 Aligned_cols=83 Identities=11% Similarity=0.028 Sum_probs=73.9
Q ss_pred cChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhccccc--h
Q 011050 61 SNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNS--M 138 (494)
Q Consensus 61 ~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~--~ 138 (494)
++...|+..|.++++.+|+++.++.++|.++...|++ ++|+..++++++++|++ .
T Consensus 88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~-----------------------~~A~~~~~~~l~~~p~~~~~ 144 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRD-----------------------EEALELLWNILKVNLGAQDG 144 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH-----------------------HHHHHHHHHHHTTCTTTTTT
T ss_pred cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccH-----------------------HHHHHHHHHHHHhCcccChH
Confidence 3344578888888888999999999999999999999 99999999999999986 5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccc
Q 011050 139 KSHLLKANALILLERYDMARDAILSGLQ 166 (494)
Q Consensus 139 ~a~~~~g~~~~~~~~~~~A~~~~~~al~ 166 (494)
.+++.+|.++..+|++++|+..|++++.
T Consensus 145 ~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 145 EVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 6999999999999999999999998763
No 229
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.39 E-value=4.3e-07 Score=87.50 Aligned_cols=99 Identities=13% Similarity=0.110 Sum_probs=85.2
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHhccCCCCcc------cccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHH
Q 011050 50 LVQKGNRAFRESNFEEAISNYSRANNIKPGDPI------VLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 123 (494)
Q Consensus 50 ~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 123 (494)
+...|..++..++|++|+.+|.+|+.+.+.... ++.++|.+|..+|+| ++|
T Consensus 118 ~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~-----------------------~~A 174 (293)
T 3u3w_A 118 QYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYL-----------------------KKG 174 (293)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCH-----------------------HHH
T ss_pred HHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCH-----------------------HHH
Confidence 345788888889999999999999997655443 689999999999999 999
Q ss_pred HHHHHHHhh-------ccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCC
Q 011050 124 LKDAEKLLN-------LQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFS 171 (494)
Q Consensus 124 ~~~~~~al~-------l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~ 171 (494)
+..++++++ ..+....+++.+|.+|..+|+|++|+..+++|+++.+..
T Consensus 175 ~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~ 229 (293)
T 3u3w_A 175 IDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI 229 (293)
T ss_dssp HHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHc
Confidence 999999994 345566799999999999999999999999999987644
No 230
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.38 E-value=6e-07 Score=73.11 Aligned_cols=83 Identities=22% Similarity=0.322 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHH
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (494)
...+...|..++..|++++|+..|.+++..+|.++.++.++|.++...|++ ++|+..
T Consensus 43 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-----------------------~~A~~~ 99 (125)
T 1na0_A 43 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDY-----------------------DEAIEY 99 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCH-----------------------HHHHHH
Confidence 456778899999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHH
Q 011050 127 AEKLLNLQSNSMKSHLLKANALILLE 152 (494)
Q Consensus 127 ~~~al~l~p~~~~a~~~~g~~~~~~~ 152 (494)
++++++++|++..++..+|.++...|
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 100 YQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 99999999999999999999987654
No 231
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.38 E-value=2.8e-07 Score=92.17 Aligned_cols=103 Identities=16% Similarity=0.108 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCc------ccccChhHHHHHHHhhhccCCCCCccccccCCCCCc
Q 011050 44 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP------IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPT 117 (494)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (494)
...+..+...|..+...|+|++|+.+|.+|+++.+... .++.++|.+|..+|++
T Consensus 181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~-------------------- 240 (383)
T 3ulq_A 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQY-------------------- 240 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH--------------------
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCH--------------------
Confidence 34466788899999999999999999999999866544 5899999999999999
Q ss_pred hhHHHHHHHHHHHhh-----cc-ccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCC
Q 011050 118 THAELALKDAEKLLN-----LQ-SNSMKSHLLKANALILLERYDMARDAILSGLQVDP 169 (494)
Q Consensus 118 ~~~~~a~~~~~~al~-----l~-p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p 169 (494)
++|+..++++++ .+ |....+++.+|.+|..+|++++|+..+++++++.+
T Consensus 241 ---~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 295 (383)
T 3ulq_A 241 ---EDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ 295 (383)
T ss_dssp ---HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 999999999999 56 88899999999999999999999999999998754
No 232
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.37 E-value=8.1e-07 Score=72.45 Aligned_cols=84 Identities=13% Similarity=0.003 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHH
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (494)
...+...|..++..|+|++|+..|.+++.++|++..+|.++|.+|..+|++ ++|+..
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-----------------------~~A~~~ 75 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDR-----------------------AGARQA 75 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH-----------------------HHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCH-----------------------HHHHHH
Confidence 567889999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccch--HHHHHHHHHHHHHHH
Q 011050 127 AEKLLNLQSNSM--KSHLLKANALILLER 153 (494)
Q Consensus 127 ~~~al~l~p~~~--~a~~~~g~~~~~~~~ 153 (494)
++++++++|... .++..+...+..+++
T Consensus 76 ~~~al~~~~~~~~~~~~~~l~~~l~~l~~ 104 (115)
T 2kat_A 76 WESGLAAAQSRGDQQVVKELQVFLRRLAR 104 (115)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccccccHHHHHHHHHHHHHhcc
Confidence 999999998653 444444444544443
No 233
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.37 E-value=2.6e-07 Score=78.88 Aligned_cols=101 Identities=17% Similarity=0.115 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCC------cccccChhHHHHHHHhhhccCCCCCccccccCCCCCchh
Q 011050 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD------PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTH 119 (494)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (494)
.+..+...|..++..|+|++|+..|.+++.+.+.. ..++.++|.++...|++
T Consensus 48 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---------------------- 105 (164)
T 3ro3_A 48 ERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDY---------------------- 105 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH----------------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhH----------------------
Confidence 34577889999999999999999999999986543 56888999999999999
Q ss_pred HHHHHHHHHHHhhccc------cchHHHHHHHHHHHHHHHHHHHHHHHHccccCCC
Q 011050 120 AELALKDAEKLLNLQS------NSMKSHLLKANALILLERYDMARDAILSGLQVDP 169 (494)
Q Consensus 120 ~~~a~~~~~~al~l~p------~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p 169 (494)
++|+..+++++++.+ ....+++.+|.+|..+|++++|+..+++++++..
T Consensus 106 -~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 106 -EKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp -HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 999999999998743 3467899999999999999999999999987643
No 234
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.36 E-value=7.4e-07 Score=71.83 Aligned_cols=79 Identities=14% Similarity=0.112 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHH
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (494)
...+...|..++..|+|++|+..|.++++.+|+++.++.++|.++...|++ ++|+..
T Consensus 38 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-----------------------~~A~~~ 94 (118)
T 1elw_A 38 HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF-----------------------EEAKRT 94 (118)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhH-----------------------HHHHHH
Confidence 567788999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHHH
Q 011050 127 AEKLLNLQSNSMKSHLLKANAL 148 (494)
Q Consensus 127 ~~~al~l~p~~~~a~~~~g~~~ 148 (494)
++++++++|++..++..++.+.
T Consensus 95 ~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 95 YEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHhh
Confidence 9999999999999998888765
No 235
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.35 E-value=7.9e-07 Score=88.87 Aligned_cols=103 Identities=16% Similarity=0.054 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCC------CcccccChhHHHHHHHhhhccCCCCCccccccCCCCCch
Q 011050 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPG------DPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTT 118 (494)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (494)
..+..+...|..+...|+|++|+..|.+|+++.+. ...++.++|.+|..+|++
T Consensus 180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~--------------------- 238 (378)
T 3q15_A 180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDD--------------------- 238 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH---------------------
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCH---------------------
Confidence 45667788999999999999999999999997432 246899999999999999
Q ss_pred hHHHHHHHHHHHhh-----ccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCC
Q 011050 119 HAELALKDAEKLLN-----LQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPF 170 (494)
Q Consensus 119 ~~~~a~~~~~~al~-----l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~ 170 (494)
++|+..++++++ .+|..+.+++.+|.+|..+|++++|+..+++++++.+.
T Consensus 239 --~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 293 (378)
T 3q15_A 239 --QMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA 293 (378)
T ss_dssp --HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred --HHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999 88988999999999999999999999999999998765
No 236
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.35 E-value=2.9e-07 Score=82.57 Aligned_cols=102 Identities=12% Similarity=-0.006 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHhc------cCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCch
Q 011050 45 THVFDLVQKGNRAFRESNFEEAISNYSRANN------IKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTT 118 (494)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~------~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (494)
..+..+...|..++..|+|++|+..|.+++. ..|....++.++|.+|...|++
T Consensus 24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------- 82 (203)
T 3gw4_A 24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW--------------------- 82 (203)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH---------------------
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH---------------------
Confidence 3467888999999999999999999999999 4555678899999999999999
Q ss_pred hHHHHHHHHHHHhhc------cc-cchHHHHHHHHHHHHHHHHHHHHHHHHccccCCC
Q 011050 119 HAELALKDAEKLLNL------QS-NSMKSHLLKANALILLERYDMARDAILSGLQVDP 169 (494)
Q Consensus 119 ~~~~a~~~~~~al~l------~p-~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p 169 (494)
++|+..+++++++ ++ ....+++.+|.++..+|++++|+..+.+++++.+
T Consensus 83 --~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 138 (203)
T 3gw4_A 83 --DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQ 138 (203)
T ss_dssp --HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 9999999999998 33 4467899999999999999999999999987643
No 237
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.34 E-value=1.2e-07 Score=92.31 Aligned_cols=50 Identities=10% Similarity=0.010 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhhccccc------hHHHHHHHHHHHHHHHHHHHHHHHHccccCCCC
Q 011050 121 ELALKDAEKLLNLQSNS------MKSHLLKANALILLERYDMARDAILSGLQVDPF 170 (494)
Q Consensus 121 ~~a~~~~~~al~l~p~~------~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~ 170 (494)
++|+..+++|+.+.+.. ..++..+|.+|..+|+|++|+..|++++++.|.
T Consensus 132 ~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 187 (307)
T 2ifu_A 132 SKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKE 187 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 55555555555554432 344555555555555555555555555555443
No 238
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.31 E-value=9.9e-08 Score=75.73 Aligned_cols=45 Identities=33% Similarity=0.636 Sum_probs=37.6
Q ss_pred cccccccccccccCcEEc---CCCCcccHhhHHHhccC----C----CCCCC--CCcc
Q 011050 201 DDFDCTLCLKLLYEPITT---PCGHSFCRSCLFQSMDR----G----NKCPL--CRAV 245 (494)
Q Consensus 201 ~~~~C~iC~~~~~~Pv~~---~cgh~fc~~Cl~~~~~~----~----~~CP~--Cr~~ 245 (494)
..++|+||++.+..|..+ +|||+||..|+..++.. + ..||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 578899999999988654 79999999999988752 2 36999 9987
No 239
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.31 E-value=1.2e-06 Score=84.37 Aligned_cols=98 Identities=13% Similarity=0.135 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHhccCCCC------cccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHH
Q 011050 49 DLVQKGNRAFRESNFEEAISNYSRANNIKPGD------PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAEL 122 (494)
Q Consensus 49 ~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (494)
.+...|..+...|+|++|+..|.+|+...+.. ..+|.++|.+|...|+| ++
T Consensus 117 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~-----------------------~~ 173 (293)
T 2qfc_A 117 WQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYL-----------------------KK 173 (293)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCH-----------------------HH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCH-----------------------HH
Confidence 34557777788899999999999999876544 35888999999999999 99
Q ss_pred HHHHHHHHhh---ccccc----hHHHHHHHHHHHHHHHHHHHHHHHHccccCCC
Q 011050 123 ALKDAEKLLN---LQSNS----MKSHLLKANALILLERYDMARDAILSGLQVDP 169 (494)
Q Consensus 123 a~~~~~~al~---l~p~~----~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p 169 (494)
|+..+++|++ ..|+. ..+++.+|.+|..+|+|++|+..+++++++.+
T Consensus 174 A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~ 227 (293)
T 2qfc_A 174 GIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC 227 (293)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 9999999994 44442 26999999999999999999999999998764
No 240
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.29 E-value=1.9e-07 Score=91.74 Aligned_cols=43 Identities=30% Similarity=0.893 Sum_probs=39.1
Q ss_pred cccccccccccccCcEEcCCCCc-ccHhhHHHhccCCCCCCCCCcccc
Q 011050 201 DDFDCTLCLKLLYEPITTPCGHS-FCRSCLFQSMDRGNKCPLCRAVLF 247 (494)
Q Consensus 201 ~~~~C~iC~~~~~~Pv~~~cgh~-fc~~Cl~~~~~~~~~CP~Cr~~~~ 247 (494)
+...|+||++.+.+|+.+||||+ ||..|+..+ ..||.||.++.
T Consensus 294 ~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~ 337 (345)
T 3t6p_A 294 EERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL----RKCPICRGIIK 337 (345)
T ss_dssp TTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC----SBCTTTCCBCC
T ss_pred CCCCCCccCCcCCceEEcCCCChhHhHHHHhcC----CcCCCCCCCcc
Confidence 46789999999999999999999 999999877 68999999863
No 241
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.28 E-value=1.7e-06 Score=69.75 Aligned_cols=76 Identities=20% Similarity=0.125 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccC-------CCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchh
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIK-------PGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTH 119 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~-------p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (494)
+.+.+..|..+++.|+|..|+..|.+|++.. +..+.++.++|.+|+++|++
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~---------------------- 62 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDL---------------------- 62 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCH----------------------
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCH----------------------
Confidence 5678899999999999999999999999863 22345566666667776666
Q ss_pred HHHHHHHHHHHhhccccchHHHHHHH
Q 011050 120 AELALKDAEKLLNLQSNSMKSHLLKA 145 (494)
Q Consensus 120 ~~~a~~~~~~al~l~p~~~~a~~~~g 145 (494)
..|+..+++++.++|++..+..+++
T Consensus 63 -~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 63 -DKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp -HHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred -HHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 6677777777777776666655554
No 242
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.27 E-value=1.2e-06 Score=86.28 Aligned_cols=124 Identities=10% Similarity=0.039 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHhcC---hHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCc------ccc-----cc
Q 011050 46 HVFDLVQKGNRAFRESN---FEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSAS------EYR-----PL 111 (494)
Q Consensus 46 ~~~~~~~~g~~~~~~~~---~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~~~-----~~ 111 (494)
.+..++.+|..++..++ +.+|+.+|.+|++++|+++.+|..++.+|.....+. ...... ... ..
T Consensus 195 ~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~--~~~~~~~~~l~~a~~a~~a~~~ 272 (372)
T 3ly7_A 195 ALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQH--PLDEKQLAALNTEIDNIVTLPE 272 (372)
T ss_dssp GGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHHHTCGG
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccC--CCchhhHHHHHHHHHHHHhccc
Confidence 46788889998887654 578999999999999999999999999987544430 000000 000 00
Q ss_pred CCCC------------CchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCc
Q 011050 112 NGLD------------PTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSN 172 (494)
Q Consensus 112 ~~~~------------~~~~~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~ 172 (494)
...+ .+...++|+..+++|+.++|+ +.+|..+|.++...|++++|++.|.+|+.++|..+
T Consensus 273 ~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 273 LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp GTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 0000 012226677777777777764 56677777777777777777777777777777654
No 243
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.27 E-value=9.3e-07 Score=91.73 Aligned_cols=112 Identities=11% Similarity=0.038 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHhcc-----CCCC---cccccChhHHHHHHHhhhccCCCCCccccccCCCCCc
Q 011050 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNI-----KPGD---PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPT 117 (494)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~-----~p~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (494)
.+....+++..+..+|+|++|+..|.+++++ .|++ ...+.|+|.+|..+|+|
T Consensus 308 ~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~-------------------- 367 (490)
T 3n71_A 308 FSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAY-------------------- 367 (490)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCH--------------------
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCH--------------------
Confidence 4556677888888999999999999999976 3333 47889999999999999
Q ss_pred hhHHHHHHHHHHHhhc--------cccchHHHHHHHHHHHHHHHHHHHHHHHHccccC-----CCCCchhHHHHHH
Q 011050 118 THAELALKDAEKLLNL--------QSNSMKSHLLKANALILLERYDMARDAILSGLQV-----DPFSNPLQASLQN 180 (494)
Q Consensus 118 ~~~~~a~~~~~~al~l--------~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l-----~p~~~~~~~~~~~ 180 (494)
++|+..+++++.+ .|+-..++.++|.+|..+|+|++|...|++|+++ -|+++...+....
T Consensus 368 ---~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~ 440 (490)
T 3n71_A 368 ---EEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAM 440 (490)
T ss_dssp ---HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 9999999999975 3555668999999999999999999999999984 6788766654433
No 244
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.26 E-value=2.1e-06 Score=72.45 Aligned_cols=79 Identities=16% Similarity=0.179 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHH
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (494)
...+...|..++..|+|++|+..|.++++++|+++.++.++|.++..+|++ ++|+..
T Consensus 65 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-----------------------~~A~~~ 121 (148)
T 2dba_A 65 AVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRL-----------------------DQAVLD 121 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCH-----------------------HHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCH-----------------------HHHHHH
Confidence 567788999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHHH
Q 011050 127 AEKLLNLQSNSMKSHLLKANAL 148 (494)
Q Consensus 127 ~~~al~l~p~~~~a~~~~g~~~ 148 (494)
+++++.++|++..++..++.+.
T Consensus 122 ~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 122 LQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHcCCCcHHHHHHHHHHH
Confidence 9999999999998887777664
No 245
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.26 E-value=5.6e-07 Score=89.70 Aligned_cols=103 Identities=24% Similarity=0.193 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcc------cccChhHHHHHHHhhhccCCCCCccccccCCCCCchh
Q 011050 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPI------VLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTH 119 (494)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (494)
.+..+...|..++..|+|++|+..|.+++++.+.... ++.++|.+|...|++
T Consensus 186 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~---------------------- 243 (406)
T 3sf4_A 186 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEF---------------------- 243 (406)
T ss_dssp HHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH----------------------
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCh----------------------
Confidence 3556778899999999999999999999999777665 999999999999999
Q ss_pred HHHHHHHHHHHhhccccc------hHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCC
Q 011050 120 AELALKDAEKLLNLQSNS------MKSHLLKANALILLERYDMARDAILSGLQVDPFS 171 (494)
Q Consensus 120 ~~~a~~~~~~al~l~p~~------~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~ 171 (494)
++|+..+++++++.+.. ..+++.+|.+|...|++++|+..|.+++++.+..
T Consensus 244 -~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 300 (406)
T 3sf4_A 244 -ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 300 (406)
T ss_dssp -HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc
Confidence 99999999999988766 7899999999999999999999999999986654
No 246
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.24 E-value=2.1e-06 Score=70.98 Aligned_cols=79 Identities=11% Similarity=0.006 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCC---cccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHH
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD---PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 123 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 123 (494)
...+...|..++..|+|++|+..|.+++..+|++ +.++.++|.+|..+|++ ++|
T Consensus 39 ~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~-----------------------~~A 95 (129)
T 2xev_A 39 PNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKN-----------------------TEA 95 (129)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCH-----------------------HHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCH-----------------------HHH
Confidence 3677889999999999999999999999999999 78899999999999999 999
Q ss_pred HHHHHHHhhccccchHHHHHHHHHH
Q 011050 124 LKDAEKLLNLQSNSMKSHLLKANAL 148 (494)
Q Consensus 124 ~~~~~~al~l~p~~~~a~~~~g~~~ 148 (494)
+..+++++..+|++..+...+..+-
T Consensus 96 ~~~~~~~~~~~p~~~~~~~a~~~l~ 120 (129)
T 2xev_A 96 QQTLQQVATQYPGSDAARVAQERLQ 120 (129)
T ss_dssp HHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCChHHHHHHHHHH
Confidence 9999999999999987765554443
No 247
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.23 E-value=9.8e-07 Score=90.07 Aligned_cols=113 Identities=13% Similarity=0.105 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhcc-----CCCCc---ccccChhHHHHHHHhhhccCCCCCccccccCCCCCch
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNI-----KPGDP---IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTT 118 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~-----~p~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (494)
+....+.+....+.|+|++|+..|.+++++ .|+++ ..+.|+|.+|..+|+|
T Consensus 298 ~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~--------------------- 356 (433)
T 3qww_A 298 ARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDW--------------------- 356 (433)
T ss_dssp HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCH---------------------
T ss_pred HHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCH---------------------
Confidence 344555566666778999999999999985 44444 7788999999999999
Q ss_pred hHHHHHHHHHHHhhc--------cccchHHHHHHHHHHHHHHHHHHHHHHHHccccC-----CCCCchhHHHHHHHH
Q 011050 119 HAELALKDAEKLLNL--------QSNSMKSHLLKANALILLERYDMARDAILSGLQV-----DPFSNPLQASLQNLE 182 (494)
Q Consensus 119 ~~~~a~~~~~~al~l--------~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l-----~p~~~~~~~~~~~~~ 182 (494)
++|+..+++++.+ .|+-...+.++|.+|..+|+|++|...|++|+++ -|+++...+...+++
T Consensus 357 --~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 357 --EGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431 (433)
T ss_dssp --HHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence 9999999999975 3555668999999999999999999999999985 678887766555553
No 248
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.23 E-value=1.6e-07 Score=76.91 Aligned_cols=46 Identities=20% Similarity=0.433 Sum_probs=0.9
Q ss_pred cccccccccccccCcE------------------EcCCCCcccHhhHHHhccCCCCCCCCCccc
Q 011050 201 DDFDCTLCLKLLYEPI------------------TTPCGHSFCRSCLFQSMDRGNKCPLCRAVL 246 (494)
Q Consensus 201 ~~~~C~iC~~~~~~Pv------------------~~~cgh~fc~~Cl~~~~~~~~~CP~Cr~~~ 246 (494)
.+-.|.||++.|.++- .++|||.||..||..|+.....||+||.++
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~ 110 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 110 (117)
T ss_dssp CC--------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCee
Confidence 3468999999988742 258999999999999999888999999975
No 249
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.21 E-value=1.4e-06 Score=87.03 Aligned_cols=114 Identities=15% Similarity=0.015 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCC-------cccccChhHHHHHHHhhhccCCCCCccccccCCCCC
Q 011050 44 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD-------PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDP 116 (494)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~-------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (494)
...+..+...|..++..|+++.|+.+|.+|+++.+.. +.++.++|.+|..+|+|
T Consensus 138 ~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~------------------- 198 (378)
T 3q15_A 138 IEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHY------------------- 198 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCH-------------------
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCH-------------------
Confidence 4557778889999999999999999999999875532 35778899999999999
Q ss_pred chhHHHHHHHHHHHhhccc------cchHHHHHHHHHHHHHHHHHHHHHHHHcccc-----CCCCCchhHHHHHH
Q 011050 117 TTHAELALKDAEKLLNLQS------NSMKSHLLKANALILLERYDMARDAILSGLQ-----VDPFSNPLQASLQN 180 (494)
Q Consensus 117 ~~~~~~a~~~~~~al~l~p------~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~-----l~p~~~~~~~~~~~ 180 (494)
++|+..+.+|+++.+ ....+++.+|.+|..+|++++|+..|+++++ .+|....+...+..
T Consensus 199 ----~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 269 (378)
T 3q15_A 199 ----DKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW 269 (378)
T ss_dssp ----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence 999999999998743 3456899999999999999999999999999 66655444444433
No 250
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.21 E-value=2.7e-06 Score=86.82 Aligned_cols=119 Identities=12% Similarity=0.040 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHhcc-----CCCC---cccccChhHHHHHHHhhhccCCCCCccccccCCCCC
Q 011050 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNI-----KPGD---PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDP 116 (494)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~-----~p~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (494)
..+.........+..+|+|++|+..|.++++. .|++ ...+.|+|.+|..+|+|
T Consensus 285 ~~~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~------------------- 345 (429)
T 3qwp_A 285 KEVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLL------------------- 345 (429)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCH-------------------
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccH-------------------
Confidence 34555666677788999999999999999976 3344 37889999999999999
Q ss_pred chhHHHHHHHHHHHhhc--------cccchHHHHHHHHHHHHHHHHHHHHHHHHccccC-----CCCCchhHHHHHHHHh
Q 011050 117 TTHAELALKDAEKLLNL--------QSNSMKSHLLKANALILLERYDMARDAILSGLQV-----DPFSNPLQASLQNLER 183 (494)
Q Consensus 117 ~~~~~~a~~~~~~al~l--------~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l-----~p~~~~~~~~~~~~~~ 183 (494)
++|+..+++++.+ .|+-...++++|.+|..+|++++|...|++|+++ -|+++.....+..+..
T Consensus 346 ----~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~ 421 (429)
T 3qwp_A 346 ----EEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEE 421 (429)
T ss_dssp ----HHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 9999999999975 3555668999999999999999999999999985 6888887777666665
Q ss_pred hhh
Q 011050 184 TTA 186 (494)
Q Consensus 184 ~~~ 186 (494)
...
T Consensus 422 ~~~ 424 (429)
T 3qwp_A 422 CDA 424 (429)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 251
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.20 E-value=2.5e-06 Score=80.81 Aligned_cols=95 Identities=14% Similarity=0.075 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHH----hcChHHHHHHHHHHhccCCCCcccccChhHHHHH----HHhhhccCCCCCccccccCCCCCch
Q 011050 47 VFDLVQKGNRAFR----ESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIR----ISQFLKHRPPSASEYRPLNGLDPTT 118 (494)
Q Consensus 47 ~~~~~~~g~~~~~----~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (494)
...+...|..+.. .+++++|+..|.+|++.+ ++.++.++|.+|.. .+++
T Consensus 38 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~--------------------- 94 (273)
T 1ouv_A 38 NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNT--------------------- 94 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCH---------------------
T ss_pred HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCH---------------------
Confidence 4567788999999 999999999999999985 78999999999999 8888
Q ss_pred hHHHHHHHHHHHhhccccchHHHHHHHHHHHH----HHHHHHHHHHHHccccCC
Q 011050 119 HAELALKDAEKLLNLQSNSMKSHLLKANALIL----LERYDMARDAILSGLQVD 168 (494)
Q Consensus 119 ~~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~----~~~~~~A~~~~~~al~l~ 168 (494)
++|+..++++++.+ ++.+++.+|.+|.. .+++++|+..|+++++++
T Consensus 95 --~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~ 144 (273)
T 1ouv_A 95 --NKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN 144 (273)
T ss_dssp --HHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT
T ss_pred --HHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC
Confidence 99999999999884 88999999999999 999999999999999876
No 252
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.19 E-value=8.6e-07 Score=85.32 Aligned_cols=103 Identities=24% Similarity=0.193 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcc------cccChhHHHHHHHhhhccCCCCCccccccCCCCCchh
Q 011050 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPI------VLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTH 119 (494)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (494)
.+..+...|..++..|++++|+..|.+++++.+.... ++.++|.++...|++
T Consensus 182 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---------------------- 239 (338)
T 3ro2_A 182 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEF---------------------- 239 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH----------------------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCH----------------------
Confidence 3456778899999999999999999999998765544 899999999999999
Q ss_pred HHHHHHHHHHHhhccccc------hHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCC
Q 011050 120 AELALKDAEKLLNLQSNS------MKSHLLKANALILLERYDMARDAILSGLQVDPFS 171 (494)
Q Consensus 120 ~~~a~~~~~~al~l~p~~------~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~ 171 (494)
++|+..+++++.+.+.. ..+++.+|.+|..+|++++|+..+++++++.+..
T Consensus 240 -~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 240 -ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp -HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 99999999999987765 7789999999999999999999999999886643
No 253
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.18 E-value=1.2e-06 Score=80.21 Aligned_cols=108 Identities=16% Similarity=0.057 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHH----hhhccCCCCCccccccCCCCCchhH
Q 011050 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRIS----QFLKHRPPSASEYRPLNGLDPTTHA 120 (494)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (494)
..+..+...|..++..+++++|+.+|.+|++. .++.+++++|.+|.. + ++
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~----------------------- 69 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADY----------------------- 69 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCH-----------------------
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCH-----------------------
Confidence 34677888999999999999999999999875 578888888888877 5 56
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHH----HHHHHHHHHHHHccccCCCC--CchhHHHHHH
Q 011050 121 ELALKDAEKLLNLQSNSMKSHLLKANALIL----LERYDMARDAILSGLQVDPF--SNPLQASLQN 180 (494)
Q Consensus 121 ~~a~~~~~~al~l~p~~~~a~~~~g~~~~~----~~~~~~A~~~~~~al~l~p~--~~~~~~~~~~ 180 (494)
.+|+..++++.+ +.++.+++.+|.+|.. .+++++|+.+|+++.+..|. +..+...+..
T Consensus 70 ~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~ 133 (212)
T 3rjv_A 70 PQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGL 133 (212)
T ss_dssp HHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHH
Confidence 999999999954 6789999999999987 88999999999999998884 3444444433
No 254
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.17 E-value=3e-06 Score=88.77 Aligned_cols=114 Identities=12% Similarity=-0.035 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCc-ccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHH
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP-IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (494)
...+...|..+...|++++|...|.+++++.|.++ .+|.+++.++.+.|++ ++|..
T Consensus 321 ~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~-----------------------~~A~~ 377 (530)
T 2ooe_A 321 MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGI-----------------------KSGRM 377 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHH-----------------------HHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCH-----------------------HHHHH
Confidence 44556667777777888888888888888888775 4788888887788888 88888
Q ss_pred HHHHHhhccccchHHHHHHHHH-HHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHh
Q 011050 126 DAEKLLNLQSNSMKSHLLKANA-LILLERYDMARDAILSGLQVDPFSNPLQASLQNLER 183 (494)
Q Consensus 126 ~~~~al~l~p~~~~a~~~~g~~-~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~ 183 (494)
.+++|++..|.....+...|.. +...|++++|+..|+++++.+|++..++..+..+..
T Consensus 378 ~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~ 436 (530)
T 2ooe_A 378 IFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLS 436 (530)
T ss_dssp HHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 8888888877776666665554 345788888888888888888888777666555543
No 255
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.15 E-value=1.7e-06 Score=65.96 Aligned_cols=50 Identities=26% Similarity=0.555 Sum_probs=41.2
Q ss_pred CCcccccccccccc--cCcEEcCCC-----CcccHhhHHHhccCC--CCCCCCCccccc
Q 011050 199 RTDDFDCTLCLKLL--YEPITTPCG-----HSFCRSCLFQSMDRG--NKCPLCRAVLFI 248 (494)
Q Consensus 199 ~~~~~~C~iC~~~~--~~Pv~~~cg-----h~fc~~Cl~~~~~~~--~~CP~Cr~~~~~ 248 (494)
......|.||++.+ .+++.+||+ |.|+..||..|+... ..||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 44567899999876 467888996 999999999999854 489999998753
No 256
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.13 E-value=1.7e-06 Score=79.27 Aligned_cols=107 Identities=8% Similarity=-0.052 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHhc----ChHHHHHHHHHHhccCCCCcccccChhHHHHH----HHhhhccCCCCCccccccCCCCCch
Q 011050 47 VFDLVQKGNRAFRES----NFEEAISNYSRANNIKPGDPIVLGNRSSAYIR----ISQFLKHRPPSASEYRPLNGLDPTT 118 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~----~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (494)
+..+...|..+.. + ++++|+.+|.+|.+ +.++.+++++|.+|.. .+++
T Consensus 50 ~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~--------------------- 105 (212)
T 3rjv_A 50 GDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDV--------------------- 105 (212)
T ss_dssp HHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCH---------------------
T ss_pred HHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCH---------------------
Confidence 4556667777776 6 88899999998854 5677888888888765 4556
Q ss_pred hHHHHHHHHHHHhhccc--cchHHHHHHHHHHHH----HHHHHHHHHHHHccccCCCCCchhHHHHHH
Q 011050 119 HAELALKDAEKLLNLQS--NSMKSHLLKANALIL----LERYDMARDAILSGLQVDPFSNPLQASLQN 180 (494)
Q Consensus 119 ~~~~a~~~~~~al~l~p--~~~~a~~~~g~~~~~----~~~~~~A~~~~~~al~l~p~~~~~~~~~~~ 180 (494)
.+|+..++++++.+| .++.+++.+|.+|.. .+++++|+.+|+++.++ |.+..+...+..
T Consensus 106 --~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~ 170 (212)
T 3rjv_A 106 --AHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGM 170 (212)
T ss_dssp --HHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHH
T ss_pred --HHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHH
Confidence 888889999988887 468888899988887 77888999999988887 555555444433
No 257
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.13 E-value=1.5e-06 Score=87.17 Aligned_cols=100 Identities=16% Similarity=0.140 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhcc------CCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhH
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNI------KPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHA 120 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~------~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (494)
+..+...|..++..|+|++|+..|.+++++ .|....++.++|.+|...|++
T Consensus 86 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------------------- 142 (411)
T 4a1s_A 86 SAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRF----------------------- 142 (411)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-----------------------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCH-----------------------
Confidence 456788999999999999999999999998 577789999999999999999
Q ss_pred HHHHHHHHHHhhc------cccchHHHHHHHHHHHHHHH-----------------HHHHHHHHHccccCCC
Q 011050 121 ELALKDAEKLLNL------QSNSMKSHLLKANALILLER-----------------YDMARDAILSGLQVDP 169 (494)
Q Consensus 121 ~~a~~~~~~al~l------~p~~~~a~~~~g~~~~~~~~-----------------~~~A~~~~~~al~l~p 169 (494)
++|+..+++++++ .+....+++.+|.+|..+|+ +++|+..|.+++++.+
T Consensus 143 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~ 214 (411)
T 4a1s_A 143 DEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMR 214 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 67788899999999999999 9999999999887643
No 258
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.13 E-value=9.5e-06 Score=84.95 Aligned_cols=105 Identities=10% Similarity=-0.037 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHH-------hcChH-------HHHHHHHHHhc-cCCCCcccccChhHHHHHHHhhhccCCCCCcccccc
Q 011050 47 VFDLVQKGNRAFR-------ESNFE-------EAISNYSRANN-IKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPL 111 (494)
Q Consensus 47 ~~~~~~~g~~~~~-------~~~~~-------~Ai~~y~~al~-~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 111 (494)
...|...|..+.. .|+++ +|+..|.+|++ +.|++..+|.++|..+...|++
T Consensus 272 ~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~-------------- 337 (530)
T 2ooe_A 272 PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKY-------------- 337 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCH--------------
T ss_pred HHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCH--------------
Confidence 4556667777665 69987 89999999997 8999999999999999999999
Q ss_pred CCCCCchhHHHHHHHHHHHhhccccch-HHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchh
Q 011050 112 NGLDPTTHAELALKDAEKLLNLQSNSM-KSHLLKANALILLERYDMARDAILSGLQVDPFSNPL 174 (494)
Q Consensus 112 ~~~~~~~~~~~a~~~~~~al~l~p~~~-~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~ 174 (494)
++|...++++++++|.++ .+|...|.++...|++++|++.|.+|++..|.+..+
T Consensus 338 ---------~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~ 392 (530)
T 2ooe_A 338 ---------EKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHV 392 (530)
T ss_dssp ---------HHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHH
T ss_pred ---------HHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHH
Confidence 999999999999999885 699999999999999999999999999998876544
No 259
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.12 E-value=1.8e-06 Score=77.32 Aligned_cols=104 Identities=12% Similarity=-0.012 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcc---CCC----CcccccChhHHHHHHHhhhccCCCCCccccccCCCCC
Q 011050 44 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNI---KPG----DPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDP 116 (494)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~---~p~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (494)
...+..+...|..+...|+|++|+..|.+++.+ .++ ...++.++|.++...|++
T Consensus 63 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~------------------- 123 (203)
T 3gw4_A 63 TAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDL------------------- 123 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCH-------------------
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCH-------------------
Confidence 344667888999999999999999999999998 332 346789999999999999
Q ss_pred chhHHHHHHHHHHHhhcccc------chHHHHHHHHHHHHHHHHHHHHHHHHccccCCCC
Q 011050 117 TTHAELALKDAEKLLNLQSN------SMKSHLLKANALILLERYDMARDAILSGLQVDPF 170 (494)
Q Consensus 117 ~~~~~~a~~~~~~al~l~p~------~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~ 170 (494)
++|+..+++++.+.+. ...++..+|.++..+|++++|+..+.+++++...
T Consensus 124 ----~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 124 ----AGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAE 179 (203)
T ss_dssp ----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 9999999999976432 2345789999999999999999999999887543
No 260
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.08 E-value=3.3e-06 Score=69.28 Aligned_cols=84 Identities=10% Similarity=0.105 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCC-------cccccChhHHHHHHHhhhccCCCCCccccccCCCCCchh
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD-------PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTH 119 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~-------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (494)
...+...|..++..|+|++|+..|.+++...|.+ ..++.++|.+|...|++
T Consensus 38 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~---------------------- 95 (131)
T 1elr_A 38 MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKY---------------------- 95 (131)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCH----------------------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccH----------------------
Confidence 4567889999999999999999999999998877 88999999999999999
Q ss_pred HHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHH
Q 011050 120 AELALKDAEKLLNLQSNSMKSHLLKANALILLERY 154 (494)
Q Consensus 120 ~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~ 154 (494)
++|+..++++++++| +...+..++.++..+++.
T Consensus 96 -~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 128 (131)
T 1elr_A 96 -KDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKEQ 128 (131)
T ss_dssp -HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHh
Confidence 999999999999999 578888888887766543
No 261
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=98.07 E-value=2.2e-06 Score=93.08 Aligned_cols=75 Identities=17% Similarity=0.196 Sum_probs=66.2
Q ss_pred CCCCcccccccccccccCcEEcCCC-CcccHhhHHHhccCCCCCCCCCcccccCCCCCcccccHHHHHHHhChHHHhh
Q 011050 197 PERTDDFDCTLCLKLLYEPITTPCG-HSFCRSCLFQSMDRGNKCPLCRAVLFITPRTCAVSVTLNSIIQKNFPEEYAE 273 (494)
Q Consensus 197 ~~~~~~~~C~iC~~~~~~Pv~~~cg-h~fc~~Cl~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~ 273 (494)
....++|.|||..+++.+||++|.| +||.+.+|..|+..+..||..|.++.. ..+.+|..|++.|+.|.....+.
T Consensus 886 ~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~--~~liPN~~Lk~~I~~w~~~~~~~ 961 (968)
T 3m62_A 886 GDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKL--EDVTPNEELRQKILCFKKQKKEE 961 (968)
T ss_dssp CCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG--GGCEECHHHHHHHHHHHHHHHTT
T ss_pred cCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCc--ccccccHHHHHHHHHHHHHHHhh
Confidence 4667899999999999999999998 699999999999988899999999853 57889999999999987665543
No 262
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.97 E-value=6e-06 Score=78.82 Aligned_cols=97 Identities=8% Similarity=-0.021 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHH
Q 011050 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDA 127 (494)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 127 (494)
.-....|..+...|+|++|...|..++...|.+. +++.+|.++++.++| .+|+..+
T Consensus 103 dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~-----------------------~dA~~~l 158 (282)
T 4f3v_A 103 AITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERW-----------------------TDVIDQV 158 (282)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCH-----------------------HHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCH-----------------------HHHHHHH
Confidence 3445678889999999999999999999999988 999999999999999 9999999
Q ss_pred HHHhhcc-ccc-hHHHHHHHHHHHHHHHHHHHHHHHHccccCC
Q 011050 128 EKLLNLQ-SNS-MKSHLLKANALILLERYDMARDAILSGLQVD 168 (494)
Q Consensus 128 ~~al~l~-p~~-~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~ 168 (494)
++++... |.+ ..+++.+|.++..+|++++|+..|.+++.-.
T Consensus 159 ~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~ 201 (282)
T 4f3v_A 159 KSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSP 201 (282)
T ss_dssp TTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTST
T ss_pred HHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC
Confidence 9998864 332 4589999999999999999999999998543
No 263
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.94 E-value=9.4e-06 Score=67.12 Aligned_cols=107 Identities=11% Similarity=0.049 Sum_probs=88.4
Q ss_pred cChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhcc-c-cch
Q 011050 61 SNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQ-S-NSM 138 (494)
Q Consensus 61 ~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~-p-~~~ 138 (494)
...+.+...|.+++..++.....-+++|.++.+-.+- .+..+++..++..+.-+ | ..-
T Consensus 15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~--------------------~d~~~GI~lLe~l~~~~~p~~~R 74 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYN--------------------DDIRKGIVLLEELLPKGSKEEQR 74 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSH--------------------HHHHHHHHHHHHHTTTSCHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCH--------------------HHHHHHHHHHHHHHhcCCcchHH
Confidence 3445566778888877777788888888888775443 22267999999999987 6 678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHhhhhh
Q 011050 139 KSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTAS 187 (494)
Q Consensus 139 ~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~ 187 (494)
+.+|.+|.+++.+|+|++|+..++..|+++|+|..+......+++++..
T Consensus 75 d~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i~~~i~k 123 (126)
T 1nzn_A 75 DYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK 123 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999999888888887754
No 264
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.93 E-value=1.2e-05 Score=64.63 Aligned_cols=82 Identities=13% Similarity=-0.037 Sum_probs=70.6
Q ss_pred ccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhcc-------ccchHHHHHHHHHHHHHHHHHH
Q 011050 84 LGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQ-------SNSMKSHLLKANALILLERYDM 156 (494)
Q Consensus 84 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~-------p~~~~a~~~~g~~~~~~~~~~~ 156 (494)
.+.+|..++..++| ..|+.-+++|++.. +.....+..+|.+|+.+|++++
T Consensus 8 c~~lG~~~~~~~~y-----------------------~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~ 64 (104)
T 2v5f_A 8 CFELGKVAYTEADY-----------------------YHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDK 64 (104)
T ss_dssp HHHHHHHHHHTTCH-----------------------HHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHccch-----------------------HHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHH
Confidence 34678889999999 99999999999864 3567889999999999999999
Q ss_pred HHHHHHccccCCCCCchhHHHHHHHHhhhhhh
Q 011050 157 ARDAILSGLQVDPFSNPLQASLQNLERTTASL 188 (494)
Q Consensus 157 A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~ 188 (494)
|+..++++++++|++..+...+..++..+...
T Consensus 65 A~~~~~~al~l~P~~~~~~~n~~~~~~~~~~~ 96 (104)
T 2v5f_A 65 ALLLTKKLLELDPEHQRANGNLKYFEYIMAKE 96 (104)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHhhHHHHHHHHHhc
Confidence 99999999999999999877777776665443
No 265
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.90 E-value=2.7e-05 Score=58.03 Aligned_cols=49 Identities=20% Similarity=0.495 Sum_probs=40.3
Q ss_pred CCcccccccccccccCcEE-cCCCCcccHhhHHHhccCC--CCCCCCCcccc
Q 011050 199 RTDDFDCTLCLKLLYEPIT-TPCGHSFCRSCLFQSMDRG--NKCPLCRAVLF 247 (494)
Q Consensus 199 ~~~~~~C~iC~~~~~~Pv~-~~cgh~fc~~Cl~~~~~~~--~~CP~Cr~~~~ 247 (494)
......|.||.+++..-.. ..|+|.|+..||..|+... ..||+||....
T Consensus 12 ~~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 12 PDAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred cCCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 3345789999998875543 4899999999999999866 78999998864
No 266
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.82 E-value=1.5e-05 Score=79.03 Aligned_cols=103 Identities=15% Similarity=0.108 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCc------ccccChhHHHHHHHhhhccCCCCCccccccCCCCCchh
Q 011050 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP------IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTH 119 (494)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (494)
.+..+...|..++..|+|++|+..|.+++.+.|... .++.++|.++...|++
T Consensus 52 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~---------------------- 109 (373)
T 1hz4_A 52 RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFL---------------------- 109 (373)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH----------------------
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCH----------------------
Confidence 355677889999999999999999999999876543 3367889999999999
Q ss_pred HHHHHHHHHHHhhcc--------ccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCC
Q 011050 120 AELALKDAEKLLNLQ--------SNSMKSHLLKANALILLERYDMARDAILSGLQVDPFS 171 (494)
Q Consensus 120 ~~~a~~~~~~al~l~--------p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~ 171 (494)
.+|+..+++++.+. |....++..+|.+|...|++++|...+.+++.+.+..
T Consensus 110 -~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 168 (373)
T 1hz4_A 110 -QTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY 168 (373)
T ss_dssp -HHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS
T ss_pred -HHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc
Confidence 99999999999876 4456788899999999999999999999999988764
No 267
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.72 E-value=2.9e-05 Score=65.82 Aligned_cols=88 Identities=11% Similarity=-0.003 Sum_probs=77.7
Q ss_pred HHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHH----HHhhhccCCCCCccccccCCCCCchhHHHHHHHHH
Q 011050 53 KGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIR----ISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAE 128 (494)
Q Consensus 53 ~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 128 (494)
.|..+...+.+++|+.+|.+|.+. .++.+++++|.+|.. .+++ .+|+..++
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~-----------------------~~A~~~~~ 85 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDL-----------------------RKAAQYYS 85 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCH-----------------------HHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccH-----------------------HHHHHHHH
Confidence 566777778888999999999987 678999999999887 5667 99999999
Q ss_pred HHhhccccchHHHHHHHHHHHH----HHHHHHHHHHHHccccC
Q 011050 129 KLLNLQSNSMKSHLLKANALIL----LERYDMARDAILSGLQV 167 (494)
Q Consensus 129 ~al~l~p~~~~a~~~~g~~~~~----~~~~~~A~~~~~~al~l 167 (494)
+|.+. .++.+++.+|.+|.. .+++++|+.+|++|.+.
T Consensus 86 ~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 86 KACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 99987 688999999999988 89999999999999876
No 268
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.70 E-value=6.6e-05 Score=74.24 Aligned_cols=103 Identities=12% Similarity=-0.039 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcc-----cccChhHHHHHHHhhhccCCCCCccccccCCCCCch
Q 011050 44 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPI-----VLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTT 118 (494)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (494)
.-.+..+...|..++..|++++|+..+.+++...|.+.. ++.++|.++...|++
T Consensus 11 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------- 69 (373)
T 1hz4_A 11 TMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGEL--------------------- 69 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCH---------------------
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcH---------------------
Confidence 334566788999999999999999999999998876542 678889999999999
Q ss_pred hHHHHHHHHHHHhhccccch------HHHHHHHHHHHHHHHHHHHHHHHHccccCCC
Q 011050 119 HAELALKDAEKLLNLQSNSM------KSHLLKANALILLERYDMARDAILSGLQVDP 169 (494)
Q Consensus 119 ~~~~a~~~~~~al~l~p~~~------~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p 169 (494)
++|+..+++++.+.|... .+++.+|.++...|++++|+..|.+++++.+
T Consensus 70 --~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~ 124 (373)
T 1hz4_A 70 --TRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLIN 124 (373)
T ss_dssp --HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 999999999999876432 3478899999999999999999999998754
No 269
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.68 E-value=4.9e-05 Score=59.78 Aligned_cols=70 Identities=14% Similarity=0.117 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHhcC---hHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHH
Q 011050 46 HVFDLVQKGNRAFRESN---FEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAEL 122 (494)
Q Consensus 46 ~~~~~~~~g~~~~~~~~---~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (494)
++..+...|..++..++ ..+|...+.+|++++|+++.++..+|..++..|+| .+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y-----------------------~~ 61 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRF-----------------------QE 61 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HH
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCH-----------------------HH
Confidence 35677888998876655 79999999999999999999999999999999999 99
Q ss_pred HHHHHHHHhhccccch
Q 011050 123 ALKDAEKLLNLQSNSM 138 (494)
Q Consensus 123 a~~~~~~al~l~p~~~ 138 (494)
|+..++++++.+|..+
T Consensus 62 Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 62 AIDTWVLLLDSNDPNL 77 (93)
T ss_dssp HHHHHHHHHTCCCTTC
T ss_pred HHHHHHHHHhhCCCCc
Confidence 9999999999999843
No 270
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.67 E-value=2.3e-05 Score=74.30 Aligned_cols=85 Identities=25% Similarity=0.248 Sum_probs=77.9
Q ss_pred HHHHHHHHHHhccCCC--CcccccChhHHHHHH-----HhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhcccc
Q 011050 64 EEAISNYSRANNIKPG--DPIVLGNRSSAYIRI-----SQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSN 136 (494)
Q Consensus 64 ~~Ai~~y~~al~~~p~--~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~ 136 (494)
..|...+.+|++++|+ +..+|..+|..|.+. |+. ++|...+++|++++|+
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~-----------------------ekA~~~ferAL~LnP~ 236 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGM-----------------------EKAHTAFEHLTRYCSA 236 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCH-----------------------HHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCH-----------------------HHHHHHHHHHHHhCCC
Confidence 5788999999999999 677999999999885 788 9999999999999997
Q ss_pred c-hHHHHHHHHHHHH-HHHHHHHHHHHHccccCCCCC
Q 011050 137 S-MKSHLLKANALIL-LERYDMARDAILSGLQVDPFS 171 (494)
Q Consensus 137 ~-~~a~~~~g~~~~~-~~~~~~A~~~~~~al~l~p~~ 171 (494)
. ...++..|..|+. .|++++|...++++++.+|..
T Consensus 237 ~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 237 HDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp TCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 5 9999999999987 599999999999999998874
No 271
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.53 E-value=6.7e-05 Score=77.70 Aligned_cols=103 Identities=8% Similarity=-0.078 Sum_probs=85.7
Q ss_pred hhhHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcc-----CCC---CcccccChhHHHHHHHhhhccCCCCCccccccC
Q 011050 41 WDRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNI-----KPG---DPIVLGNRSSAYIRISQFLKHRPPSASEYRPLN 112 (494)
Q Consensus 41 ~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~-----~p~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 112 (494)
.+-+..+..+...|..|..+|+|++|+.+|.+++++ .|+ -...+.|+|.+|...|+|
T Consensus 345 ~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~--------------- 409 (490)
T 3n71_A 345 DTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHI--------------- 409 (490)
T ss_dssp TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCH---------------
T ss_pred CCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCH---------------
Confidence 344456777888999999999999999999999976 333 348899999999999999
Q ss_pred CCCCchhHHHHHHHHHHHhhc-----ccc---chHHHHHHHHHHHHHHHHHHHHHHHHcccc
Q 011050 113 GLDPTTHAELALKDAEKLLNL-----QSN---SMKSHLLKANALILLERYDMARDAILSGLQ 166 (494)
Q Consensus 113 ~~~~~~~~~~a~~~~~~al~l-----~p~---~~~a~~~~g~~~~~~~~~~~A~~~~~~al~ 166 (494)
++|+..+++|+.+ .|+ -.+..-.++.++..++.|++|...|.++.+
T Consensus 410 --------~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 410 --------EVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp --------HHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999975 344 455667889999999999999999988743
No 272
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=97.53 E-value=6.1e-05 Score=77.87 Aligned_cols=94 Identities=14% Similarity=0.030 Sum_probs=61.6
Q ss_pred HHHHHHHHHHhc---ChHHHHHHHHHHhccCCCCcccccChhHHHHH----HHhhhccCCCCCccccccCCCCCchhHHH
Q 011050 50 LVQKGNRAFRES---NFEEAISNYSRANNIKPGDPIVLGNRSSAYIR----ISQFLKHRPPSASEYRPLNGLDPTTHAEL 122 (494)
Q Consensus 50 ~~~~g~~~~~~~---~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (494)
+...|..++..| ++++|+.+|.+|++. .++.+++++|.+|.. .+++ ++
T Consensus 331 ~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~-----------------------~~ 385 (490)
T 2xm6_A 331 QANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDE-----------------------QQ 385 (490)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCH-----------------------HH
T ss_pred HHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCH-----------------------HH
Confidence 344555555433 666666666666665 456666666666665 4555 77
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHHHH----HHHHHHHHHHHHccccCCCC
Q 011050 123 ALKDAEKLLNLQSNSMKSHLLKANALIL----LERYDMARDAILSGLQVDPF 170 (494)
Q Consensus 123 a~~~~~~al~l~p~~~~a~~~~g~~~~~----~~~~~~A~~~~~~al~l~p~ 170 (494)
|+..++++++.. ++.+++.+|.+|.. .+++++|+.+|+++++.+|+
T Consensus 386 A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 386 AAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 777777777653 56677777777776 67777777777777777743
No 273
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.47 E-value=0.00021 Score=81.03 Aligned_cols=103 Identities=15% Similarity=0.165 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHH
Q 011050 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDA 127 (494)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 127 (494)
..+...|..++..|+|++|+.+|++| ..|..+|.+|.++|+| ++|++.+
T Consensus 1196 ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~-----------------------q~AIEaa 1244 (1630)
T 1xi4_A 1196 AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEY-----------------------QAAVDGA 1244 (1630)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCH-----------------------HHHHHHH
Confidence 46778999999999999999999997 4789999999999999 9999999
Q ss_pred HHHhhccc-------------------------cchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHH
Q 011050 128 EKLLNLQS-------------------------NSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (494)
Q Consensus 128 ~~al~l~p-------------------------~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 181 (494)
++|...++ .+++.+..++..|...|.|++|+..+++++.++|.+......+..+
T Consensus 1245 rKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiL 1323 (1630)
T 1xi4_A 1245 RKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAIL 1323 (1630)
T ss_pred HHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHH
Confidence 99865543 1334455667778889999999999999999998887766554443
No 274
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.41 E-value=0.00016 Score=73.13 Aligned_cols=101 Identities=15% Similarity=0.173 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHH
Q 011050 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDA 127 (494)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 127 (494)
..+...|..++..|+|++|+.+|+++ ..|.++|.|+.++|+| ++|++.+
T Consensus 123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~y-----------------------q~AVea~ 171 (449)
T 1b89_A 123 AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEY-----------------------QAAVDGA 171 (449)
T ss_dssp --------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCH-----------------------HHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccH-----------------------HHHHHHH
Confidence 37888899999999999999999987 5788899999999999 8899999
Q ss_pred HHHhhcccc---------------------------chHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHH
Q 011050 128 EKLLNLQSN---------------------------SMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQN 180 (494)
Q Consensus 128 ~~al~l~p~---------------------------~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~ 180 (494)
+++. +|. +++-...+...|...|++++|+..+++++.+++.+-.+...+..
T Consensus 172 ~KA~--~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~i 249 (449)
T 1b89_A 172 RKAN--STRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAI 249 (449)
T ss_dssp HHHT--CHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHH
T ss_pred HHcC--CchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 8883 331 11112223366778888888888888888888877666555544
Q ss_pred H
Q 011050 181 L 181 (494)
Q Consensus 181 ~ 181 (494)
+
T Consensus 250 l 250 (449)
T 1b89_A 250 L 250 (449)
T ss_dssp H
T ss_pred H
Confidence 3
No 275
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.41 E-value=0.00015 Score=74.29 Aligned_cols=103 Identities=10% Similarity=-0.073 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHhc---ChHHHHHHHHHHhccCCCCcccccChhHHHHHH----HhhhccCCCCCccccccCCCCCchhHH
Q 011050 49 DLVQKGNRAFRES---NFEEAISNYSRANNIKPGDPIVLGNRSSAYIRI----SQFLKHRPPSASEYRPLNGLDPTTHAE 121 (494)
Q Consensus 49 ~~~~~g~~~~~~~---~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (494)
.+...|..+...| ++++|+..|.+|.+..|.++..++++|.+|... +++ .
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~-----------------------~ 234 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDE-----------------------K 234 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCH-----------------------H
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCH-----------------------H
Confidence 4556677777777 778888888888888777777667777776443 244 6
Q ss_pred HHHHHHHHHhhccccchHHHHHHHHH-H--HHHHHHHHHHHHHHccccCCCCCchhHHHHH
Q 011050 122 LALKDAEKLLNLQSNSMKSHLLKANA-L--ILLERYDMARDAILSGLQVDPFSNPLQASLQ 179 (494)
Q Consensus 122 ~a~~~~~~al~l~p~~~~a~~~~g~~-~--~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~ 179 (494)
+|+..++++. |.++.+++.+|.+ | ...+++++|+.+|+++.+. .+..+...+.
T Consensus 235 ~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg 290 (452)
T 3e4b_A 235 TAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLG 290 (452)
T ss_dssp HHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred HHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHH
Confidence 7777777776 6777777777777 3 3567777777777777643 3444444333
No 276
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.38 E-value=0.00038 Score=71.35 Aligned_cols=99 Identities=10% Similarity=0.015 Sum_probs=82.2
Q ss_pred HHHHHHHHHh----cChHHHHHHHHHHhccCCCCcccccChhHHHH---HHHhhhccCCCCCccccccCCCCCchhHHHH
Q 011050 51 VQKGNRAFRE----SNFEEAISNYSRANNIKPGDPIVLGNRSSAYI---RISQFLKHRPPSASEYRPLNGLDPTTHAELA 123 (494)
Q Consensus 51 ~~~g~~~~~~----~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 123 (494)
...|..+... +++++|+..|.++. |.++.+++++|.+|+ ..+++ .+|
T Consensus 217 ~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~-----------------------~~A 270 (452)
T 3e4b_A 217 DSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDV-----------------------EQM 270 (452)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCH-----------------------HHH
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCH-----------------------HHH
Confidence 4455555544 79999999999998 999999999999954 45566 999
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHH-----HHHHHHHHHHccccCCCCCchhHHHHHHH
Q 011050 124 LKDAEKLLNLQSNSMKSHLLKANALILLE-----RYDMARDAILSGLQVDPFSNPLQASLQNL 181 (494)
Q Consensus 124 ~~~~~~al~l~p~~~~a~~~~g~~~~~~~-----~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 181 (494)
+..++++.+. .++.+++.+|.+|. .| ++++|+.+|+++. |.+..+...+..+
T Consensus 271 ~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~ 327 (452)
T 3e4b_A 271 MKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQI 327 (452)
T ss_dssp HHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHH
T ss_pred HHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHH
Confidence 9999999865 48999999999997 66 9999999999999 8888776666544
No 277
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.36 E-value=0.00045 Score=57.21 Aligned_cols=68 Identities=12% Similarity=0.058 Sum_probs=61.7
Q ss_pred HHHHHHHHHHhhccc-cchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHhhhhhh
Q 011050 121 ELALKDAEKLLNLQS-NSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASL 188 (494)
Q Consensus 121 ~~a~~~~~~al~l~p-~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~ 188 (494)
..++..++..++-+| ..-+.+|.+|.+++.+|+|++|+.+.+..|+++|+|..+......+++++.+.
T Consensus 60 ~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~Ie~ki~kd 128 (134)
T 3o48_A 60 RLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVEDKIQKE 128 (134)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhh
Confidence 789999999998888 45788999999999999999999999999999999999999888888888653
No 278
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.35 E-value=0.00017 Score=61.76 Aligned_cols=78 Identities=13% Similarity=0.033 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHhc---ChHHHHHHHHHHhccC-C-CCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHH
Q 011050 47 VFDLVQKGNRAFRES---NFEEAISNYSRANNIK-P-GDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAE 121 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~---~~~~Ai~~y~~al~~~-p-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (494)
....++.|..+.+.+ ++++||..+...++.+ | ++.++++++|.+|+++++| .
T Consensus 32 ~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y-----------------------~ 88 (152)
T 1pc2_A 32 KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY-----------------------E 88 (152)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCH-----------------------H
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCH-----------------------H
Confidence 456677888888877 7789999999999998 7 5689999999999999999 9
Q ss_pred HHHHHHHHHhhccccchHHHHHHHHH
Q 011050 122 LALKDAEKLLNLQSNSMKSHLLKANA 147 (494)
Q Consensus 122 ~a~~~~~~al~l~p~~~~a~~~~g~~ 147 (494)
+|.+.++++++++|++.+|...+-.+
T Consensus 89 ~A~~y~~~lL~ieP~n~QA~~Lk~~i 114 (152)
T 1pc2_A 89 KALKYVRGLLQTEPQNNQAKELERLI 114 (152)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 99999999999999998887554333
No 279
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=97.29 E-value=0.00042 Score=71.55 Aligned_cols=104 Identities=12% Similarity=-0.021 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHH----hcChHHHHHHHHHHhccCCCCcccccChhHHHHH----HHhhhccCCCCCccccccCCCCCc
Q 011050 46 HVFDLVQKGNRAFR----ESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIR----ISQFLKHRPPSASEYRPLNGLDPT 117 (494)
Q Consensus 46 ~~~~~~~~g~~~~~----~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 117 (494)
++..+...|..++. .+++++|+..|.+|++. +++.+++++|.+|.. .+++
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~-------------------- 95 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDY-------------------- 95 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCH--------------------
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCH--------------------
Confidence 45677778888887 88999999999999876 567888888888877 6677
Q ss_pred hhHHHHHHHHHHHhhccccchHHHHHHHHHHHH----HHHHHHHHHHHHccccCCCCCchhHHHH
Q 011050 118 THAELALKDAEKLLNLQSNSMKSHLLKANALIL----LERYDMARDAILSGLQVDPFSNPLQASL 178 (494)
Q Consensus 118 ~~~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~----~~~~~~A~~~~~~al~l~p~~~~~~~~~ 178 (494)
.+|+..++++.+. .++.+++.+|.+|.. .+++++|+.+|+++.+. .+..+...+
T Consensus 96 ---~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~L 153 (490)
T 2xm6_A 96 ---AQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSM 153 (490)
T ss_dssp ---HHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred ---HHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHH
Confidence 8888888888765 477888888888877 77888888888888764 344443333
No 280
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.27 E-value=0.00056 Score=57.36 Aligned_cols=68 Identities=12% Similarity=0.058 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhhccc-cchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHhhhhhh
Q 011050 121 ELALKDAEKLLNLQS-NSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASL 188 (494)
Q Consensus 121 ~~a~~~~~~al~l~p-~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~ 188 (494)
.+++..++..+.-+| ..-+.+|.+|.+++.+|+|++|+.+.+..|+++|+|..+......+++++...
T Consensus 59 ~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~Ie~~i~kd 127 (144)
T 1y8m_A 59 RLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVEDKIQKE 127 (144)
T ss_dssp HHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHh
Confidence 789999999999888 46778999999999999999999999999999999999998888888887553
No 281
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.25 E-value=0.00068 Score=65.44 Aligned_cols=101 Identities=8% Similarity=-0.083 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHhccCC--CCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHH
Q 011050 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKP--GDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (494)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (494)
..+...|..+...|++++|+..+.+++..+| ++..++...+.++.++|+. +.|.+
T Consensus 101 ~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~-----------------------d~A~k 157 (310)
T 3mv2_B 101 YELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNV-----------------------STAST 157 (310)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCH-----------------------HHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCH-----------------------HHHHH
Confidence 3456789999999999999999999999997 7889999999999999999 99999
Q ss_pred HHHHHhhcccc----chHHHHHH--HHHHHHHH--HHHHHHHHHHccccCCCCC
Q 011050 126 DAEKLLNLQSN----SMKSHLLK--ANALILLE--RYDMARDAILSGLQVDPFS 171 (494)
Q Consensus 126 ~~~~al~l~p~----~~~a~~~~--g~~~~~~~--~~~~A~~~~~~al~l~p~~ 171 (494)
.+++..+.+|+ .......+ |.+....| ++.+|...|+++.+..|++
T Consensus 158 ~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~ 211 (310)
T 3mv2_B 158 IFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTW 211 (310)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSH
T ss_pred HHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCc
Confidence 99999999993 23344444 44466667 9999999999999888873
No 282
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.18 E-value=0.00034 Score=59.10 Aligned_cols=89 Identities=12% Similarity=-0.018 Sum_probs=71.8
Q ss_pred hcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhccccchH
Q 011050 60 ESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMK 139 (494)
Q Consensus 60 ~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~ 139 (494)
.+|+++|+.+|.+|.+.. ++.+. +|.+|...+.+ ++|++.+++|.+. .++.
T Consensus 8 ~~d~~~A~~~~~~aa~~g--~~~a~--lg~~y~~g~~~-----------------------~~A~~~~~~Aa~~--g~~~ 58 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN--EMFGC--LSLVSNSQINK-----------------------QKLFQYLSKACEL--NSGN 58 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT--CTTHH--HHHHTCTTSCH-----------------------HHHHHHHHHHHHT--TCHH
T ss_pred ccCHHHHHHHHHHHHcCC--CHhhh--HHHHHHcCCCH-----------------------HHHHHHHHHHHcC--CCHH
Confidence 468899999999999886 34444 77777666666 7899999999987 6889
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHccccCCCCCchhHHHHH
Q 011050 140 SHLLKANALIL----LERYDMARDAILSGLQVDPFSNPLQASLQ 179 (494)
Q Consensus 140 a~~~~g~~~~~----~~~~~~A~~~~~~al~l~p~~~~~~~~~~ 179 (494)
+++.+|.+|.. .+++++|+.+|++|.+. .+..+...+.
T Consensus 59 a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg 100 (138)
T 1klx_A 59 GCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILG 100 (138)
T ss_dssp HHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHH
Confidence 99999999988 89999999999999876 4454444443
No 283
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.16 E-value=0.00067 Score=68.19 Aligned_cols=104 Identities=9% Similarity=0.028 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCC-------------------------------------------
Q 011050 44 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD------------------------------------------- 80 (494)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~------------------------------------------- 80 (494)
......+...|..++..|+|++|+..|.+++...+..
T Consensus 52 ~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 131 (434)
T 4b4t_Q 52 NEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRV 131 (434)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCC
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCcc
Confidence 3344567788888888888888888888876643321
Q ss_pred ---cccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhc------cccchHHHHHHHHHHHHH
Q 011050 81 ---PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNL------QSNSMKSHLLKANALILL 151 (494)
Q Consensus 81 ---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l------~p~~~~a~~~~g~~~~~~ 151 (494)
+.++.++|.+|...|+| .+|+..+.+++.. .+....++...|.+|..+
T Consensus 132 ~~~~~~~~~la~~~~~~g~~-----------------------~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (434)
T 4b4t_Q 132 FLKHSLSIKLATLHYQKKQY-----------------------KDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKL 188 (434)
T ss_dssp SSHHHHHHHHHHHHHHHTCH-----------------------HHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHccCh-----------------------HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHh
Confidence 13455677778888888 8888888877654 345567888888888888
Q ss_pred HHHHHHHHHHHccccCCCC
Q 011050 152 ERYDMARDAILSGLQVDPF 170 (494)
Q Consensus 152 ~~~~~A~~~~~~al~l~p~ 170 (494)
|++++|...|++++.+.+.
T Consensus 189 ~~~~~A~~~~~~al~~~~~ 207 (434)
T 4b4t_Q 189 RNLAKSKASLTAARTAANS 207 (434)
T ss_dssp TCHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhhc
Confidence 8888888888888876553
No 284
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.16 E-value=9.3e-05 Score=70.85 Aligned_cols=49 Identities=22% Similarity=0.653 Sum_probs=38.3
Q ss_pred CCcccccccccccccC----cE----EcCCCCcccHhhHHHhccCC-----------CCCCCCCcccc
Q 011050 199 RTDDFDCTLCLKLLYE----PI----TTPCGHSFCRSCLFQSMDRG-----------NKCPLCRAVLF 247 (494)
Q Consensus 199 ~~~~~~C~iC~~~~~~----Pv----~~~cgh~fc~~Cl~~~~~~~-----------~~CP~Cr~~~~ 247 (494)
......|.||+..+.+ |. ...|||.|+..||.+|+... ..||.||.++.
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 3456789999998776 31 14799999999999998631 35999999874
No 285
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.09 E-value=0.00077 Score=58.15 Aligned_cols=95 Identities=8% Similarity=0.028 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcc---------cccChhHHHHHHHhhhccCCCCCccccccCCCCCc
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPI---------VLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPT 117 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (494)
...+++....++..|.|+.|+..+..++.+..+++. ++..+|.+++..++|
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~ey-------------------- 79 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEY-------------------- 79 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCH--------------------
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHH--------------------
Confidence 356788899999999999999999998887655544 678899999999999
Q ss_pred hhHHHHHHHHHHHhhccc---c----------------------chHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 011050 118 THAELALKDAEKLLNLQS---N----------------------SMKSHLLKANALILLERYDMARDAILSG 164 (494)
Q Consensus 118 ~~~~~a~~~~~~al~l~p---~----------------------~~~a~~~~g~~~~~~~~~~~A~~~~~~a 164 (494)
..|...|++|+++.. . ..+..|..|.||..++++++|+..++..
T Consensus 80 ---rrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 80 ---RNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp ---HHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred ---HHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 899999999876431 1 1257799999999999999999998765
No 286
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.06 E-value=0.00034 Score=54.26 Aligned_cols=43 Identities=26% Similarity=0.588 Sum_probs=34.8
Q ss_pred ccccccccccCc-EEcCCCCcccHhhHHHhccC-CCCCCCCCccc
Q 011050 204 DCTLCLKLLYEP-ITTPCGHSFCRSCLFQSMDR-GNKCPLCRAVL 246 (494)
Q Consensus 204 ~C~iC~~~~~~P-v~~~cgh~fc~~Cl~~~~~~-~~~CP~Cr~~~ 246 (494)
.|+.|.-++..- .++||+|.||.+|+..|..+ ...||.|+.++
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V 47 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPV 47 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBC
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCee
Confidence 478888766654 45799999999999998754 57899999986
No 287
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.05 E-value=0.00036 Score=49.74 Aligned_cols=47 Identities=28% Similarity=0.499 Sum_probs=38.2
Q ss_pred CcccccccccccccCcEEcCCC--C---cccHhhHHHhccC--CCCCCCCCccc
Q 011050 200 TDDFDCTLCLKLLYEPITTPCG--H---SFCRSCLFQSMDR--GNKCPLCRAVL 246 (494)
Q Consensus 200 ~~~~~C~iC~~~~~~Pv~~~cg--h---~fc~~Cl~~~~~~--~~~CP~Cr~~~ 246 (494)
.+...|.||++...++...||. + .|+..||..|+.. ...||+|+..+
T Consensus 4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~ 57 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVY 57 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBC
T ss_pred CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCee
Confidence 3556899999887778778865 4 8999999999874 46799999876
No 288
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.05 E-value=0.00092 Score=64.50 Aligned_cols=98 Identities=11% Similarity=-0.017 Sum_probs=81.2
Q ss_pred HHHHHHHhc--ChHHHHHHHHHHhccCCC--CcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHH
Q 011050 53 KGNRAFRES--NFEEAISNYSRANNIKPG--DPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAE 128 (494)
Q Consensus 53 ~g~~~~~~~--~~~~Ai~~y~~al~~~p~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 128 (494)
.|...+..| ++++|...|+++.+..|+ ....+++ ++..+|+| ++|.+.++
T Consensus 182 ea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~-----------------------~eAe~~L~ 235 (310)
T 3mv2_B 182 ESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNI-----------------------AEAQGIVE 235 (310)
T ss_dssp HHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCH-----------------------HHHHHHHH
T ss_pred HHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCH-----------------------HHHHHHHH
Confidence 343355555 999999999999988886 3445555 89999999 99999999
Q ss_pred HHhhc----------cccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHH
Q 011050 129 KLLNL----------QSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASL 178 (494)
Q Consensus 129 ~al~l----------~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~ 178 (494)
.++++ +|+++.++.++..+...+|+ +|.+.+.++.+.+|+++-+....
T Consensus 236 ~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~~ 293 (310)
T 3mv2_B 236 LLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHHQ 293 (310)
T ss_dssp HHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHHH
Confidence 88877 58899999999888888887 89999999999999999765443
No 289
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.93 E-value=0.0031 Score=59.73 Aligned_cols=87 Identities=10% Similarity=-0.085 Sum_probs=63.1
Q ss_pred cCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhcccc--chHHHHHHHHHHHHH--
Q 011050 76 IKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSN--SMKSHLLKANALILL-- 151 (494)
Q Consensus 76 ~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~--~~~a~~~~g~~~~~~-- 151 (494)
.+|+++.+++..|.+....-.. .-..+.--..+..|...+++|+++||+ +..+|..+|..|...
T Consensus 147 ~~~~dve~L~W~ai~~ss~a~~------------~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp 214 (301)
T 3u64_A 147 CTRVDVGTLYWVGTGYVAAFAL------------TPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPE 214 (301)
T ss_dssp CCGGGHHHHHHHHHHHHHHHTT------------SCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCT
T ss_pred cCccccHHHHHHHHHHHHHHhc------------CCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCC
Confidence 3566666666655554332111 001233445568899999999999999 456999999999884
Q ss_pred ---HHHHHHHHHHHccccCCCCC-chh
Q 011050 152 ---ERYDMARDAILSGLQVDPFS-NPL 174 (494)
Q Consensus 152 ---~~~~~A~~~~~~al~l~p~~-~~~ 174 (494)
|+.++|..+|++|++++|+. ...
T Consensus 215 ~~gGd~ekA~~~ferAL~LnP~~~id~ 241 (301)
T 3u64_A 215 SFGGGMEKAHTAFEHLTRYCSAHDPDH 241 (301)
T ss_dssp TTTCCHHHHHHHHHHHHHHCCTTCSHH
T ss_pred ccCCCHHHHHHHHHHHHHhCCCCCchH
Confidence 99999999999999999975 443
No 290
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.92 E-value=0.00077 Score=67.72 Aligned_cols=98 Identities=10% Similarity=0.037 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcc-----------------cccChhHHHHHHHhhhccCCCCCcccccc
Q 011050 49 DLVQKGNRAFRESNFEEAISNYSRANNIKPGDPI-----------------VLGNRSSAYIRISQFLKHRPPSASEYRPL 111 (494)
Q Consensus 49 ~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~-----------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 111 (494)
..+++|..+++.|+|++|+..|.++++..|.... ++.++|.+|...|+|
T Consensus 6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~-------------- 71 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAK-------------- 71 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCH--------------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCH--------------
Confidence 4567899999999999999999999999988654 356788999999999
Q ss_pred CCCCCchhHHHHHHHHHHHhhccccchHH------HHHHHHHHHHHHHHHHHHHHHHccccCCC
Q 011050 112 NGLDPTTHAELALKDAEKLLNLQSNSMKS------HLLKANALILLERYDMARDAILSGLQVDP 169 (494)
Q Consensus 112 ~~~~~~~~~~~a~~~~~~al~l~p~~~~a------~~~~g~~~~~~~~~~~A~~~~~~al~l~p 169 (494)
++|++.+.+++...+...++ ...+|.++...|++++|+..+.+++...+
T Consensus 72 ---------~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 126 (434)
T 4b4t_Q 72 ---------DKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAK 126 (434)
T ss_dssp ---------HHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999876654433 33456666667788888888887776543
No 291
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.73 E-value=0.0016 Score=74.04 Aligned_cols=66 Identities=12% Similarity=0.016 Sum_probs=58.2
Q ss_pred CCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHH
Q 011050 78 PGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMA 157 (494)
Q Consensus 78 p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A 157 (494)
.+.+.+|+++|.++...|++ .+|+..|.+| +++.+|+..|.++..+|+|++|
T Consensus 1102 vn~p~vWsqLAKAql~~G~~-----------------------kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEA 1153 (1630)
T 1xi4_A 1102 CNEPAVWSQLAKAQLQKGMV-----------------------KEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEEL 1153 (1630)
T ss_pred cCCHHHHHHHHHHHHhCCCH-----------------------HHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHH
Confidence 45678999999999999999 9999999887 7888999999999999999999
Q ss_pred HHHHHccccCCCCC
Q 011050 158 RDAILSGLQVDPFS 171 (494)
Q Consensus 158 ~~~~~~al~l~p~~ 171 (494)
++.|..|.+.+++.
T Consensus 1154 IeyL~mArk~~~e~ 1167 (1630)
T 1xi4_A 1154 VKYLQMARKKARES 1167 (1630)
T ss_pred HHHHHHHHhhcccc
Confidence 99999998887553
No 292
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=96.65 E-value=0.0021 Score=64.99 Aligned_cols=111 Identities=16% Similarity=0.112 Sum_probs=88.7
Q ss_pred hHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccC------------------------------hhHHHH
Q 011050 43 RYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGN------------------------------RSSAYI 92 (494)
Q Consensus 43 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~------------------------------~a~~~~ 92 (494)
.+..+..+...|..+++.|+|++|+..|.+|. ++..|.. ++.+|.
T Consensus 144 ~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA~-----~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Ye 218 (449)
T 1b89_A 144 LYNNVSNFGRLASTLVHLGEYQAAVDGARKAN-----STRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQ 218 (449)
T ss_dssp HHHHTTCHHHHHHHHHTTTCHHHHHHHHHHHT-----CHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHhccHHHHHHHHHHcC-----CchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHH
Confidence 34445566778999999999999999999993 3333322 234566
Q ss_pred HHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHH--HHHHHHHHHHHHHHccccCCC-
Q 011050 93 RISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANAL--ILLERYDMARDAILSGLQVDP- 169 (494)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~a~~~~g~~~--~~~~~~~~A~~~~~~al~l~p- 169 (494)
+.|++ ++|+..+++++.+++.+...+..+|.+| +..++..++++.|...+.+.|
T Consensus 219 k~G~~-----------------------eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~ 275 (449)
T 1b89_A 219 DRGYF-----------------------EELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKV 275 (449)
T ss_dssp HTTCH-----------------------HHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHH
T ss_pred HCCCH-----------------------HHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHH
Confidence 66777 9999999999999999999999999998 468999999999999999888
Q ss_pred ----CCchhHHHHHHH
Q 011050 170 ----FSNPLQASLQNL 181 (494)
Q Consensus 170 ----~~~~~~~~~~~~ 181 (494)
++...+..+.-+
T Consensus 276 ~~~~~~~~~w~e~~~l 291 (449)
T 1b89_A 276 LRAAEQAHLWAELVFL 291 (449)
T ss_dssp HHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 777777665444
No 293
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.25 E-value=0.0052 Score=62.39 Aligned_cols=74 Identities=14% Similarity=0.047 Sum_probs=62.0
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcc-----CCC---CcccccChhHHHHHHHhhhccCCCCCccc
Q 011050 37 GSLPWDRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNI-----KPG---DPIVLGNRSSAYIRISQFLKHRPPSASEY 108 (494)
Q Consensus 37 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~-----~p~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 108 (494)
..+..+-+..+..+...|..+..+|+|++|+.+|.+++.. .|+ -...|+|+|.+|...|+|
T Consensus 319 ~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~----------- 387 (429)
T 3qwp_A 319 ERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMF----------- 387 (429)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCH-----------
T ss_pred CcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCH-----------
Confidence 3344555566788889999999999999999999999976 233 347899999999999999
Q ss_pred cccCCCCCchhHHHHHHHHHHHhhc
Q 011050 109 RPLNGLDPTTHAELALKDAEKLLNL 133 (494)
Q Consensus 109 ~~~~~~~~~~~~~~a~~~~~~al~l 133 (494)
++|+..+++|+++
T Consensus 388 ------------~eA~~~~~~Al~i 400 (429)
T 3qwp_A 388 ------------PQAMKNLRLAFDI 400 (429)
T ss_dssp ------------HHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHH
Confidence 9999999999975
No 294
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.03 E-value=0.0057 Score=60.18 Aligned_cols=90 Identities=10% Similarity=-0.052 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHH
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (494)
+..+...|..++..|++++|+..+++|+.++|+ ..+|..+|.++...|++ ++|++.
T Consensus 277 a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~-----------------------~eA~e~ 332 (372)
T 3ly7_A 277 SIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMN-----------------------REAADA 332 (372)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCH-----------------------HHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCH-----------------------HHHHHH
Confidence 344555667777889999999999999999974 66778889999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHH--HHHHHHHHHHHHHH
Q 011050 127 AEKLLNLQSNSMKSHLLKANA--LILLERYDMARDAI 161 (494)
Q Consensus 127 ~~~al~l~p~~~~a~~~~g~~--~~~~~~~~~A~~~~ 161 (494)
+.+|+.++|... .|++..+. |..+....-+++.|
T Consensus 333 ~~~AlrL~P~~~-t~~~~~~l~F~sn~~~i~~~~~~~ 368 (372)
T 3ly7_A 333 YLTAFNLRPGAN-TLYWIENGIFQTSVPYVVPYLDKF 368 (372)
T ss_dssp HHHHHHHSCSHH-HHHHHHHSSSCCCHHHHCHHHHHH
T ss_pred HHHHHhcCCCcC-hHHHHhCceeecchhhhHHHHHhc
Confidence 999999999775 45544432 23445454555444
No 295
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.85 E-value=0.0049 Score=62.59 Aligned_cols=72 Identities=8% Similarity=-0.013 Sum_probs=61.0
Q ss_pred chhhHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcc--------CCCCcccccChhHHHHHHHhhhccCCCCCcccccc
Q 011050 40 PWDRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNI--------KPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPL 111 (494)
Q Consensus 40 ~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 111 (494)
.++-+..+..+...|..|..+|+|++|+.+|.+++++ +|+-...|.|+|.+|...|+|
T Consensus 333 g~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~-------------- 398 (433)
T 3qww_A 333 EDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENK-------------- 398 (433)
T ss_dssp CTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCH--------------
T ss_pred ChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCH--------------
Confidence 3444556777888999999999999999999999976 333448899999999999999
Q ss_pred CCCCCchhHHHHHHHHHHHhhcc
Q 011050 112 NGLDPTTHAELALKDAEKLLNLQ 134 (494)
Q Consensus 112 ~~~~~~~~~~~a~~~~~~al~l~ 134 (494)
++|+..+++|+.+-
T Consensus 399 ---------~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 399 ---------AAGEKALKKAIAIM 412 (433)
T ss_dssp ---------HHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHH
Confidence 99999999999853
No 296
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=95.63 E-value=0.24 Score=47.32 Aligned_cols=181 Identities=11% Similarity=-0.012 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCc--------cc--ccChhHHHHH---HHhhhccCCCCCcccccc
Q 011050 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP--------IV--LGNRSSAYIR---ISQFLKHRPPSASEYRPL 111 (494)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~--------~~--~~~~a~~~~~---~~~~~~~~~~~~~~~~~~ 111 (494)
.........|..++..|+|++|+..|..+|..-|-.. .+ +...+.-|+- +..-++..+.
T Consensus 112 ~~L~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~Rr~l~~-------- 183 (325)
T 3mv2_A 112 DVVNEKMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKE-------- 183 (325)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCT--------
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--------
Confidence 3345567799999999999999999999988644221 11 1111111111 0000000000
Q ss_pred CCCCCchhHHHHHHH--HHHHhhccccchHHHHHHHH-HHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHhhhhhh
Q 011050 112 NGLDPTTHAELALKD--AEKLLNLQSNSMKSHLLKAN-ALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASL 188 (494)
Q Consensus 112 ~~~~~~~~~~~a~~~--~~~al~l~p~~~~a~~~~g~-~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~ 188 (494)
+.....++. |=...++.|.+...-.+.|. ..++.++|.-|....++.|+++|..+.+..+.+.+...-.+.
T Consensus 184 ------~~~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~a~qArkil~~ce~~~ 257 (325)
T 3mv2_A 184 ------GNTVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPRAEQARKIKNKADSMA 257 (325)
T ss_dssp ------TCHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHTSC
T ss_pred ------ccHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC
Confidence 011111121 11223445555444444444 357899999999999999999997655544333332222211
Q ss_pred hccccCCCCCCCccccccccccccc--CcEE--cCCCCcccHhhHHHhccCCCCCCCCCcc
Q 011050 189 IGRRIHGTPERTDDFDCTLCLKLLY--EPIT--TPCGHSFCRSCLFQSMDRGNKCPLCRAV 245 (494)
Q Consensus 189 ~~~~~~~~~~~~~~~~C~iC~~~~~--~Pv~--~~cgh~fc~~Cl~~~~~~~~~CP~Cr~~ 245 (494)
...-........+-..|...+..+. .|.. .=||-.|+... .|..|++|...
T Consensus 258 ~Da~eidyD~~~~F~iCa~s~tPIY~g~~~v~Cp~cgA~y~~~~------kG~lC~vC~l~ 312 (325)
T 3mv2_A 258 SDAIPIDFDPYAKFDICAATYKPIYEDTPSVSDPLTGSKYVITE------KDKIDRIAMIS 312 (325)
T ss_dssp CCSSCCSCCTTSCEEECTTTCCEEESSSCEEECTTTCCEEEGGG------TTSBCSSSSCB
T ss_pred CCccccCCCCCCCceeecCCcccccCCCCCccCCCCCCeechhh------CCCCCCCCcCc
Confidence 1111111111112224555444332 2321 13444444332 46789999864
No 297
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.45 E-value=0.026 Score=46.40 Aligned_cols=77 Identities=13% Similarity=0.022 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHhcChHH---HHHHHHHHhccC-C-CCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHH
Q 011050 48 FDLVQKGNRAFRESNFEE---AISNYSRANNIK-P-GDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAEL 122 (494)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~---Ai~~y~~al~~~-p-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (494)
...+..|..+.+..+... +|..+...+..+ | ..-.+++.+|.+++++|+| .+
T Consensus 36 ~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y-----------------------~~ 92 (126)
T 1nzn_A 36 STQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY-----------------------EK 92 (126)
T ss_dssp HHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCH-----------------------HH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhH-----------------------HH
Confidence 444556666666655554 999999998877 5 5668999999999999999 99
Q ss_pred HHHHHHHHhhccccchHHHHHHHHH
Q 011050 123 ALKDAEKLLNLQSNSMKSHLLKANA 147 (494)
Q Consensus 123 a~~~~~~al~l~p~~~~a~~~~g~~ 147 (494)
|.+.++.+++.+|+|.+|.-....+
T Consensus 93 A~~~~~~lL~~eP~n~QA~~Lk~~i 117 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNNQAKELERLI 117 (126)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999999998887555443
No 298
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.35 E-value=0.054 Score=54.04 Aligned_cols=99 Identities=17% Similarity=0.037 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCc----------------------ccccChhHHHHHHHhhhccCC
Q 011050 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP----------------------IVLGNRSSAYIRISQFLKHRP 102 (494)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~----------------------~~~~~~a~~~~~~~~~~~~~~ 102 (494)
.....+...|......|+.+.|+..+.+|+.+-.... .+...++.++...|++
T Consensus 113 ~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~----- 187 (388)
T 2ff4_A 113 GRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRA----- 187 (388)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCH-----
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH-----
Confidence 3356677788888888999999999999999842211 2222345556667777
Q ss_pred CCCccccccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHcccc
Q 011050 103 PSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQ 166 (494)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~ 166 (494)
.+|+..+..++..+|-+-.+|..+..+|+..|+..+|++.|.++-+
T Consensus 188 ------------------~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 188 ------------------SAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp ------------------HHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred ------------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999987643
No 299
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=95.22 E-value=0.35 Score=46.13 Aligned_cols=183 Identities=16% Similarity=0.124 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCc--------cc--ccChhHHHHH---HHhhhccCCCCCccccccC
Q 011050 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP--------IV--LGNRSSAYIR---ISQFLKHRPPSASEYRPLN 112 (494)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~--------~~--~~~~a~~~~~---~~~~~~~~~~~~~~~~~~~ 112 (494)
.....+..|..++..|+|++|+..|..+|..-|-.. .+ +...+.-|+- +..-++..+..
T Consensus 101 ~l~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYilal~iEl~Rr~l~~~-------- 172 (320)
T 3mkr_B 101 DLIQRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSMETERKKLPKE-------- 172 (320)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--------
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC--------
Confidence 345567899999999999999999999998755321 01 1111111111 00000000000
Q ss_pred CCCCchhHHHHHH--HHHHHhhccccchHHHHHHHH-HHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHhhhhhhh
Q 011050 113 GLDPTTHAELALK--DAEKLLNLQSNSMKSHLLKAN-ALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASLI 189 (494)
Q Consensus 113 ~~~~~~~~~~a~~--~~~~al~l~p~~~~a~~~~g~-~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~ 189 (494)
+ .+.....++ .|=...++.|.+...-.+.|. ..++.++|.-|....++.|++.|..+.+..+.+.+...-.+..
T Consensus 173 --~-~~~~kR~lELAAYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~~~qArkil~~ce~~~~ 249 (320)
T 3mkr_B 173 --T-LEQQKRICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPEVAQQTRKILSACEKNPT 249 (320)
T ss_dssp --S-HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCC
T ss_pred --C-chhHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCC
Confidence 0 011111111 122233455655444444444 3578999999999999999998875544433333322222111
Q ss_pred ccccCCCCCCCccccccccccccc--CcEE--cCCCCcccHhhHHHhccCCCCCCCCCcc
Q 011050 190 GRRIHGTPERTDDFDCTLCLKLLY--EPIT--TPCGHSFCRSCLFQSMDRGNKCPLCRAV 245 (494)
Q Consensus 190 ~~~~~~~~~~~~~~~C~iC~~~~~--~Pv~--~~cgh~fc~~Cl~~~~~~~~~CP~Cr~~ 245 (494)
..-........+-..|...+..+. .|.. .=||-.|+... .|..|++|...
T Consensus 250 da~eidyD~~~~f~iCa~s~tPIY~g~~~v~Cp~cgA~y~~~~------kG~lC~vC~l~ 303 (320)
T 3mkr_B 250 DAYQLNYDMHNPFDICAASYRPIYRGKPVEKCPLSGACYSPEF------KGQICKVTTVT 303 (320)
T ss_dssp BSSCCSCCTTSCCCBBTTTCCBCCTTSCCEECTTTCCEECGGG------TTSBCTTTSSB
T ss_pred CccccCCCCCCccceecCCCccccCCCCCccCCCCCCeechhh------CCCCCCCCcCc
Confidence 111111111222234555555433 2211 13444444332 46789999864
No 300
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.68 E-value=0.012 Score=46.49 Aligned_cols=33 Identities=21% Similarity=0.586 Sum_probs=27.7
Q ss_pred ccccccccccc-ccCcEE--cCCCCcccHhhHHH-hc
Q 011050 201 DDFDCTLCLKL-LYEPIT--TPCGHSFCRSCLFQ-SM 233 (494)
Q Consensus 201 ~~~~C~iC~~~-~~~Pv~--~~cgh~fc~~Cl~~-~~ 233 (494)
++..|++|.+. +..|+. +.|||+||..|+.. +.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence 35789999964 778887 89999999999997 44
No 301
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.45 E-value=0.04 Score=45.51 Aligned_cols=76 Identities=8% Similarity=0.052 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhc---ChHHHHHHHHHHhccCCC-CcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHH
Q 011050 50 LVQKGNRAFRES---NFEEAISNYSRANNIKPG-DPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (494)
Q Consensus 50 ~~~~g~~~~~~~---~~~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (494)
.+.-|-.+.+.. +..++|..+...+..+|. .-..++.+|.+++++|+| .+|.+
T Consensus 43 ~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY-----------------------~~Ar~ 99 (134)
T 3o48_A 43 RFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEY-----------------------SMAKR 99 (134)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCH-----------------------HHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhH-----------------------HHHHH
Confidence 344455555443 445799999999988884 568899999999999999 99999
Q ss_pred HHHHHhhccccchHHHHHHHHHH
Q 011050 126 DAEKLLNLQSNSMKSHLLKANAL 148 (494)
Q Consensus 126 ~~~~al~l~p~~~~a~~~~g~~~ 148 (494)
.++.+++.+|+|.+|.-....+-
T Consensus 100 y~d~lL~~eP~N~QA~~Lk~~Ie 122 (134)
T 3o48_A 100 YVDTLFEHERNNKQVGALKSMVE 122 (134)
T ss_dssp HHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHhhCCCCHHHHHHHHHHH
Confidence 99999999999988875554443
No 302
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=94.08 E-value=0.036 Score=51.16 Aligned_cols=46 Identities=22% Similarity=0.561 Sum_probs=37.6
Q ss_pred cccccccccccccCcEE-cCCCCcccHhhHHHhccCC--CCCCCCCccc
Q 011050 201 DDFDCTLCLKLLYEPIT-TPCGHSFCRSCLFQSMDRG--NKCPLCRAVL 246 (494)
Q Consensus 201 ~~~~C~iC~~~~~~Pv~-~~cgh~fc~~Cl~~~~~~~--~~CP~Cr~~~ 246 (494)
....|.+|.++....+. -.|+|.|+..|+..|+... ..||.|+...
T Consensus 179 ~i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W 227 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYW 227 (238)
T ss_dssp TCCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBC
T ss_pred CCCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCC
Confidence 46789999998876543 4599999999999998753 4899999875
No 303
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=94.05 E-value=0.12 Score=55.58 Aligned_cols=112 Identities=13% Similarity=-0.014 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHhcc-CCCCcccccChhHHHHHHHh-hhccCCCCCccccccCCCCCchhHHHHHHH
Q 011050 49 DLVQKGNRAFRESNFEEAISNYSRANNI-KPGDPIVLGNRSSAYIRISQ-FLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (494)
Q Consensus 49 ~~~~~g~~~~~~~~~~~Ai~~y~~al~~-~p~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (494)
.|...++...+.|+.+.|...|.+|++. .+....+|...|......++ + +.|...
T Consensus 436 vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~-----------------------e~Ar~i 492 (679)
T 4e6h_A 436 VYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDT-----------------------KTACKV 492 (679)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCC-----------------------HHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCH-----------------------HHHHHH
Confidence 4555566666778999999999999988 44445566554444444433 5 899999
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCC---CchhHHHHHHHHh
Q 011050 127 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPF---SNPLQASLQNLER 183 (494)
Q Consensus 127 ~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~---~~~~~~~~~~~~~ 183 (494)
++.+++..|+.+..+...+......|+.+.|.+.|++|+...|+ ...++...-.++.
T Consensus 493 fe~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~ 552 (679)
T 4e6h_A 493 LELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFES 552 (679)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 99999999999888777787778899999999999999999884 3344444444433
No 304
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=93.47 E-value=0.15 Score=54.77 Aligned_cols=96 Identities=7% Similarity=-0.037 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHhcChHHHH-HHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHH
Q 011050 49 DLVQKGNRAFRESNFEEAI-SNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDA 127 (494)
Q Consensus 49 ~~~~~g~~~~~~~~~~~Ai-~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 127 (494)
-|+..|.-....|+.++|. ..|.+|+...|.+..+|...|......|++ +.|...+
T Consensus 345 lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~-----------------------e~aR~iy 401 (679)
T 4e6h_A 345 IWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKI-----------------------PEIETTI 401 (679)
T ss_dssp HHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCH-----------------------HHHHHHH
Confidence 3555666666778888997 999999999999999999999998888998 8999999
Q ss_pred HHHhhcc-----------cc-----------chHHHHHHHHHHHHHHHHHHHHHHHHccccC
Q 011050 128 EKLLNLQ-----------SN-----------SMKSHLLKANALILLERYDMARDAILSGLQV 167 (494)
Q Consensus 128 ~~al~l~-----------p~-----------~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 167 (494)
++++..- |. ....|...+......|..+.|.+.|.+|++.
T Consensus 402 ek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~ 463 (679)
T 4e6h_A 402 LSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL 463 (679)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9998752 42 4456777777777889999999999999887
No 305
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.36 E-value=0.31 Score=41.15 Aligned_cols=105 Identities=11% Similarity=-0.036 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHhcCh------HHHHHHHHHHhccCCCCcc-cccChhHH------HHHHHhhhccCCCCCccccccCC
Q 011050 47 VFDLVQKGNRAFRESNF------EEAISNYSRANNIKPGDPI-VLGNRSSA------YIRISQFLKHRPPSASEYRPLNG 113 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~------~~Ai~~y~~al~~~p~~~~-~~~~~a~~------~~~~~~~~~~~~~~~~~~~~~~~ 113 (494)
...|+.-....-+.|+. ++-+..|.+|+..-|-... .+...+.. +..+++.
T Consensus 13 yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~---------------- 76 (161)
T 4h7y_A 13 PEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEP---------------- 76 (161)
T ss_dssp HHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCG----------------
T ss_pred HHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCH----------------
Confidence 45555555566666888 8888999999987665431 11111111 2233444
Q ss_pred CCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchh
Q 011050 114 LDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPL 174 (494)
Q Consensus 114 ~~~~~~~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~ 174 (494)
+.|-+.|+.++.+...+++.|...|+--...|+..+|...+-+|+.+.|...+.
T Consensus 77 -------d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 77 -------DDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp -------GGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred -------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence 888899999998888887777777776678999999999999999999987663
No 306
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.32 E-value=0.21 Score=41.73 Aligned_cols=77 Identities=8% Similarity=0.055 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHhcC---hHHHHHHHHHHhccCCC-CcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHH
Q 011050 48 FDLVQKGNRAFRESN---FEEAISNYSRANNIKPG-DPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 123 (494)
Q Consensus 48 ~~~~~~g~~~~~~~~---~~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 123 (494)
...++.|..+.+..+ -.++|..+...+..+|. .-..++.+|.+++++|+| .+|
T Consensus 40 ~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y-----------------------~~A 96 (144)
T 1y8m_A 40 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEY-----------------------SMA 96 (144)
T ss_dssp HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCH-----------------------HHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhH-----------------------HHH
Confidence 334455555555443 34799999999988884 558899999999999999 999
Q ss_pred HHHHHHHhhccccchHHHHHHHHH
Q 011050 124 LKDAEKLLNLQSNSMKSHLLKANA 147 (494)
Q Consensus 124 ~~~~~~al~l~p~~~~a~~~~g~~ 147 (494)
.+.++.+++.+|+|.+|.-....+
T Consensus 97 r~y~d~lL~~eP~n~QA~~Lk~~I 120 (144)
T 1y8m_A 97 KRYVDTLFEHERNNKQVGALKSMV 120 (144)
T ss_dssp HHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHH
Confidence 999999999999998876544333
No 307
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=93.03 E-value=0.13 Score=44.34 Aligned_cols=81 Identities=19% Similarity=0.161 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcc---CCCC----------------------cccccChhHHHHHHHhhh
Q 011050 44 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNI---KPGD----------------------PIVLGNRSSAYIRISQFL 98 (494)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~---~p~~----------------------~~~~~~~a~~~~~~~~~~ 98 (494)
...+..+.-.|+.+|.+++|.+|...|.+||+. -++. .++.+..|.||.+++++
T Consensus 60 ~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~- 138 (167)
T 3ffl_A 60 PQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQD- 138 (167)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCH-
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCH-
Confidence 345677888999999999999999999999765 1211 14668899999999999
Q ss_pred ccCCCCCccccccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHH
Q 011050 99 KHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANAL 148 (494)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~a~~~~g~~~ 148 (494)
.+|+...+..-. .-..++....+|..|
T Consensus 139 ----------------------~~Ai~~Le~Ip~-k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 139 ----------------------KDAIAILDGIPS-RQRTPKINMLLANLY 165 (167)
T ss_dssp ----------------------HHHHHHHHTSCG-GGCCHHHHHHHHHHC
T ss_pred ----------------------HHHHHHHhcCCc-hhcCHHHHHHHHHHh
Confidence 999887655322 223455555555544
No 308
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=91.67 E-value=0.16 Score=38.61 Aligned_cols=47 Identities=23% Similarity=0.465 Sum_probs=37.8
Q ss_pred CcccccccccccccCcEEcCCCCcccHhhHHHhccCCCCCCCCCcccc
Q 011050 200 TDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 247 (494)
Q Consensus 200 ~~~~~C~iC~~~~~~Pv~~~cgh~fc~~Cl~~~~~~~~~CP~Cr~~~~ 247 (494)
...+.|.-|....+. .+.=.-|..|..||...+..+..||+|..+|.
T Consensus 26 ~G~~nCKsCWf~~k~-LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLP 72 (99)
T 2ko5_A 26 LGPQFCKSCWFENKG-LVECNNHYLCLNCLTLLLSVSNRCPICKMPLP 72 (99)
T ss_dssp SCCCCCCSSCSCCSS-EEECSSCEEEHHHHHHTCSSSSEETTTTEECC
T ss_pred cCcccChhhccccCC-eeeecchhhHHHHHHHHHhhccCCcccCCcCC
Confidence 345689999866664 34455799999999999999999999999884
No 309
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=90.19 E-value=0.78 Score=42.70 Aligned_cols=64 Identities=16% Similarity=0.121 Sum_probs=59.0
Q ss_pred HHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhc
Q 011050 54 GNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNL 133 (494)
Q Consensus 54 g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l 133 (494)
...+++.|+.++|+......++.+|.|+.....+...+.-.|+| +.|...++-+.++
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w-----------------------~RA~~QL~~~a~l 60 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDF-----------------------ERADEQLMQSIKL 60 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCH-----------------------HHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCH-----------------------HHHHHHHHHHHHh
Confidence 45678999999999999999999999999999999999999999 9999999999999
Q ss_pred cccchHH
Q 011050 134 QSNSMKS 140 (494)
Q Consensus 134 ~p~~~~a 140 (494)
+|.....
T Consensus 61 ~p~~~~~ 67 (273)
T 1zbp_A 61 FPEYLPG 67 (273)
T ss_dssp CGGGHHH
T ss_pred CchhhHH
Confidence 9987554
No 310
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=88.59 E-value=0.43 Score=51.43 Aligned_cols=45 Identities=33% Similarity=0.183 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccc
Q 011050 121 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGL 165 (494)
Q Consensus 121 ~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al 165 (494)
+.|++.+++|+.+.|.....|+.++.+|..+|+|+.|+-.++.+-
T Consensus 354 elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 354 ELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999998874
No 311
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=86.16 E-value=3.4 Score=42.23 Aligned_cols=38 Identities=8% Similarity=-0.146 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccC
Q 011050 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGN 86 (494)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~ 86 (494)
.-|...+.-....|+.++|...|.+|+.. |.+..++..
T Consensus 214 ~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~ 251 (493)
T 2uy1_A 214 EVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLY 251 (493)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHH
Confidence 34566666677889999999999999999 998766553
No 312
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=84.21 E-value=0.97 Score=34.04 Aligned_cols=37 Identities=27% Similarity=0.222 Sum_probs=33.1
Q ss_pred chhhHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcc
Q 011050 40 PWDRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNI 76 (494)
Q Consensus 40 ~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~ 76 (494)
+.+....|..+..+|...=+.|+|++|+.+|.+|++.
T Consensus 12 ~~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 12 QVMLEEMARKYAINAVKADKEGNAEEAITNYKKAIEV 48 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4567788999999999999999999999999999884
No 313
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=84.13 E-value=0.76 Score=49.53 Aligned_cols=49 Identities=12% Similarity=0.087 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhh
Q 011050 49 DLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQF 97 (494)
Q Consensus 49 ~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~ 97 (494)
-+..++.-+..+|+|+-|+..-.+|....|.+-..|+.+|.+|+.+|+|
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~ 387 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEY 387 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccH
Confidence 3455777788999999999999999999999999999999999999999
No 314
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=83.95 E-value=5.4 Score=40.70 Aligned_cols=93 Identities=10% Similarity=-0.135 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHH-hhhccCCCCCccccccCCCCCchhHHHHHHHH
Q 011050 49 DLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRIS-QFLKHRPPSASEYRPLNGLDPTTHAELALKDA 127 (494)
Q Consensus 49 ~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 127 (494)
-|..-+....+.++.+.|...|.+| ...+....+|...|..-+..+ +. +.|...+
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~-----------------------~~ar~if 343 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSR-----------------------ATPYNIF 343 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCS-----------------------HHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCCh-----------------------HHHHHHH
Confidence 3455555555678899999999999 433334455555555555555 36 8999999
Q ss_pred HHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccc
Q 011050 128 EKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGL 165 (494)
Q Consensus 128 ~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al 165 (494)
+.+++..|+.+..+...+......|+.+.|...|+++.
T Consensus 344 e~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~ 381 (493)
T 2uy1_A 344 SSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLE 381 (493)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999889888766666776778899999999999984
No 315
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=82.19 E-value=1.3 Score=41.21 Aligned_cols=60 Identities=12% Similarity=0.126 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHH
Q 011050 121 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQN 180 (494)
Q Consensus 121 ~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~ 180 (494)
++|+......++.+|.+.+.-..+.+.|+..|+++.|...++.+.+++|........+..
T Consensus 14 ~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~ 73 (273)
T 1zbp_A 14 QQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRH 73 (273)
T ss_dssp HHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999988765444333
No 316
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=80.84 E-value=0.99 Score=43.88 Aligned_cols=63 Identities=21% Similarity=0.422 Sum_probs=44.2
Q ss_pred CcccccccccccccCcEE-cCCCCcccHhh--HHHhc--cCCCCCCCCCcccccCCCCCcccccHHHHHH
Q 011050 200 TDDFDCTLCLKLLYEPIT-TPCGHSFCRSC--LFQSM--DRGNKCPLCRAVLFITPRTCAVSVTLNSIIQ 264 (494)
Q Consensus 200 ~~~~~C~iC~~~~~~Pv~-~~cgh~fc~~C--l~~~~--~~~~~CP~Cr~~~~~~~~~~~~~~~l~~~~~ 264 (494)
.-.+.||+....+..|+. ..|.|.-|.+- +.... .....||+|...+. +.++.++..+.+++.
T Consensus 247 ~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~--~~dL~ID~~~~~IL~ 314 (371)
T 3i2d_A 247 IMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA--LENLAISEFVDDILQ 314 (371)
T ss_dssp EEESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC--GGGEEEBHHHHHHHT
T ss_pred EEeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC--HHHeeEcHHHHHHHH
Confidence 456899999999999986 58999966554 22222 23568999998764 356666666665553
No 317
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=78.81 E-value=4.2 Score=41.61 Aligned_cols=79 Identities=14% Similarity=0.006 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHH
Q 011050 49 DLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAE 128 (494)
Q Consensus 49 ~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 128 (494)
-+...|+.+.-+..+..|..+|.+|+.+.|++...|..+|......++. -.|+-.|-
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~-----------------------l~a~y~y~ 210 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDH-----------------------LTTIFYYC 210 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCH-----------------------HHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhccccc-----------------------HHHHHHHH
Confidence 4567888888889999999999999999999999999999999888887 78888888
Q ss_pred HHhhccccchHHHHHHHHHHHH
Q 011050 129 KLLNLQSNSMKSHLLKANALIL 150 (494)
Q Consensus 129 ~al~l~p~~~~a~~~~g~~~~~ 150 (494)
+++-...-++.|.-++...+..
T Consensus 211 rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 211 RSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHhcCCCChhHHHHHHHHHHH
Confidence 8888776688888777776643
No 318
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.32 E-value=1.5 Score=44.16 Aligned_cols=94 Identities=6% Similarity=-0.013 Sum_probs=69.7
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHhccCCCC---cccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHH
Q 011050 50 LVQKGNRAFRESNFEEAISNYSRANNIKPGD---PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (494)
Q Consensus 50 ~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (494)
+...|.-+++.||+++|+..|.++....... ..++.+...+++..++| ..+...
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~-----------------------~~~~~~ 190 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQ-----------------------LYVKEK 190 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCH-----------------------HHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccH-----------------------HHHHHH
Confidence 5678999999999999999999998764433 26677777778888888 788777
Q ss_pred HHHHhhcc---ccc-h--HHHHHHHHHHHHHHHHHHHHHHHHcccc
Q 011050 127 AEKLLNLQ---SNS-M--KSHLLKANALILLERYDMARDAILSGLQ 166 (494)
Q Consensus 127 ~~~al~l~---p~~-~--~a~~~~g~~~~~~~~~~~A~~~~~~al~ 166 (494)
+.++-.+- +++ . ......|.++...++|.+|...|..++.
T Consensus 191 ~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 191 LEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhc
Confidence 77775542 221 1 2333456667788999999998887764
No 319
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=76.86 E-value=1.8 Score=41.97 Aligned_cols=63 Identities=19% Similarity=0.277 Sum_probs=43.9
Q ss_pred CcccccccccccccCcEE-cCCCCcccHhhH--HHhc--cCCCCCCCCCcccccCCCCCcccccHHHHHH
Q 011050 200 TDDFDCTLCLKLLYEPIT-TPCGHSFCRSCL--FQSM--DRGNKCPLCRAVLFITPRTCAVSVTLNSIIQ 264 (494)
Q Consensus 200 ~~~~~C~iC~~~~~~Pv~-~~cgh~fc~~Cl--~~~~--~~~~~CP~Cr~~~~~~~~~~~~~~~l~~~~~ 264 (494)
.-.+.||+....+..|+. ..|.|.-|-+-. .... .....||+|...+. +.++.++..+.+++.
T Consensus 213 ~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~--~~dL~ID~~~~~IL~ 280 (360)
T 4fo9_A 213 RVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA--YESLILDGLFMEILN 280 (360)
T ss_dssp EEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC--GGGEEEBHHHHHHHT
T ss_pred EEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC--HHHeEEcHHHHHHHH
Confidence 456789999999999986 599999555432 2222 23568999999874 356666666655543
No 320
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=76.20 E-value=11 Score=32.53 Aligned_cols=84 Identities=10% Similarity=-0.055 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHH
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (494)
-..|...|..++..|+++-|..+|.++=. +..+...|...|+- +.-.+.
T Consensus 34 ~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~-----------------------e~L~kl 82 (177)
T 3mkq_B 34 SITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDV-----------------------NKLSKM 82 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCH-----------------------HHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCH-----------------------HHHHHH
Confidence 45788999999999999999999988755 33444556666665 333333
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHcccc
Q 011050 127 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQ 166 (494)
Q Consensus 127 ~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~ 166 (494)
.+.|.... ++ .....++..+|+++++++.|.+.-+
T Consensus 83 a~iA~~~g-~~----n~af~~~l~lGdv~~~i~lL~~~~r 117 (177)
T 3mkq_B 83 QNIAQTRE-DF----GSMLLNTFYNNSTKERSSIFAEGGS 117 (177)
T ss_dssp HHHHHHTT-CH----HHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred HHHHHHCc-cH----HHHHHHHHHcCCHHHHHHHHHHCCC
Confidence 44443332 22 2223467788999999988877644
No 321
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=75.33 E-value=3.4 Score=31.00 Aligned_cols=34 Identities=21% Similarity=0.206 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcc
Q 011050 43 RYTHVFDLVQKGNRAFRESNFEEAISNYSRANNI 76 (494)
Q Consensus 43 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~ 76 (494)
....|..+..+|...=+.|+|++|+.+|.+|++.
T Consensus 7 ~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~ 40 (83)
T 2v6y_A 7 LEDMARKYAILAVKADKEGKVEDAITYYKKAIEV 40 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4567889999999999999999999999999884
No 322
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=75.18 E-value=8.4 Score=39.37 Aligned_cols=91 Identities=9% Similarity=0.012 Sum_probs=68.8
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHhcc--CCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHH
Q 011050 50 LVQKGNRAFRESNFEEAISNYSRANNI--KPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDA 127 (494)
Q Consensus 50 ~~~~g~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 127 (494)
+...-..+.+.|++++|...|.+..+. .| +...|..+-.+|.+.|++ ++|.+.+
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~tyn~lI~~~~~~g~~-----------------------~~A~~l~ 163 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQP-RLRSYGPALFGFCRKGDA-----------------------DKAYEVD 163 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCH-----------------------HHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ccceehHHHHHHHHCCCH-----------------------HHHHHHH
Confidence 344455677889999999999887764 34 456677777788888888 8898888
Q ss_pred HHHhhc--cccchHHHHHHHHHHHHHHHHHHHHHHHHccc
Q 011050 128 EKLLNL--QSNSMKSHLLKANALILLERYDMARDAILSGL 165 (494)
Q Consensus 128 ~~al~l--~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al 165 (494)
++..+. .| +...|..+-.+|...|+.++|.+.|.+.-
T Consensus 164 ~~M~~~G~~P-d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr 202 (501)
T 4g26_A 164 AHMVESEVVP-EEPELAALLKVSMDTKNADKVYKTLQRLR 202 (501)
T ss_dssp HHHHHTTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCCC-CHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 887654 34 44667777888999999999998888753
No 323
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=74.92 E-value=3.2 Score=42.44 Aligned_cols=62 Identities=10% Similarity=-0.217 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHH
Q 011050 121 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLE 182 (494)
Q Consensus 121 ~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~ 182 (494)
..|...|.+|..++|++...|..+|.+....|+.-+|+-+|.+++....-++.+...+..+=
T Consensus 169 ~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f 230 (497)
T 1ya0_A 169 SQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999887666666665554443
No 324
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=73.14 E-value=8.3 Score=33.18 Aligned_cols=96 Identities=10% Similarity=0.112 Sum_probs=70.4
Q ss_pred HHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHh-
Q 011050 53 KGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLL- 131 (494)
Q Consensus 53 ~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al- 131 (494)
.+-.++-.|+|.+|+.+... -+-....+--+.||.++++| ..|+.-.+..+
T Consensus 39 ~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdY-----------------------kkA~~~le~il~ 90 (242)
T 3kae_A 39 MSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDY-----------------------KKAIKSLESILE 90 (242)
T ss_dssp HHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCH-----------------------HHHHHHHHHHHT
T ss_pred hhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHh
Confidence 45667777888888766532 22344555568999999999 99999998888
Q ss_pred -hcc---------------ccchHH-HHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHH
Q 011050 132 -NLQ---------------SNSMKS-HLLKANALILLERYDMARDAILSGLQVDPFSNPLQA 176 (494)
Q Consensus 132 -~l~---------------p~~~~a-~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~ 176 (494)
..+ |.+-+- +..+|..+.+.|+-++|+.+|......+|-.+.+..
T Consensus 91 ~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEn 152 (242)
T 3kae_A 91 GKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVEN 152 (242)
T ss_dssp TCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred cccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHH
Confidence 222 333333 445688899999999999999999988887776543
No 325
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=72.66 E-value=1.4 Score=34.51 Aligned_cols=30 Identities=20% Similarity=0.584 Sum_probs=20.4
Q ss_pred ccCcEEcCCCCcccHhhHHHhccCCCCCCCCCccc
Q 011050 212 LYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVL 246 (494)
Q Consensus 212 ~~~Pv~~~cgh~fc~~Cl~~~~~~~~~CP~Cr~~~ 246 (494)
+..|....||++|+ ..+.....||.|+..-
T Consensus 65 v~p~~C~~CG~~F~-----~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 65 IKPAQCRKCGFVFK-----AEINIPSRCPKCKSEW 94 (105)
T ss_dssp ECCCBBTTTCCBCC-----CCSSCCSSCSSSCCCC
T ss_pred EECcChhhCcCeec-----ccCCCCCCCcCCCCCc
Confidence 44556679999992 2234456899999863
No 326
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=72.36 E-value=4.7 Score=30.41 Aligned_cols=49 Identities=22% Similarity=0.214 Sum_probs=31.0
Q ss_pred CCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCc
Q 011050 114 LDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSN 172 (494)
Q Consensus 114 ~~~~~~~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~ 172 (494)
|||++ ..|+....+|++.|... .--....-|.+|++.|..+++..|+..
T Consensus 9 ~~~~~--~~A~~lv~~Ave~D~~g--------~y~eAl~lY~~Aie~ll~alk~e~d~~ 57 (86)
T 4a5x_A 9 MDPQS--TAAATVLKRAVELDSES--------RYPQALVCYQEGIDLLLQVLKGTKDNT 57 (86)
T ss_dssp --CHH--HHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHHHHTCCCHH
T ss_pred CChHH--HHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHHHHHHhhCCCHH
Confidence 67777 78888888888876321 111233556777788888877776654
No 327
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=72.21 E-value=4.4 Score=40.08 Aligned_cols=91 Identities=12% Similarity=-0.035 Sum_probs=64.5
Q ss_pred HHHHHHHHhcChHHHHHHHHHHhccCCC--Cc----ccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHH
Q 011050 52 QKGNRAFRESNFEEAISNYSRANNIKPG--DP----IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (494)
Q Consensus 52 ~~g~~~~~~~~~~~Ai~~y~~al~~~p~--~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (494)
..|..++..|+|.+|...+++.++.-.. +. .+|......|..++++ .++-.
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~-----------------------~k~k~ 160 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNL-----------------------PKARA 160 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCH-----------------------HHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccH-----------------------HHHHH
Confidence 6788999999999999999988764221 22 5566667778888888 66666
Q ss_pred HHHHHhhcc------cc-chHHHHHHHHHHH-HHHHHHHHHHHHHccc
Q 011050 126 DAEKLLNLQ------SN-SMKSHLLKANALI-LLERYDMARDAILSGL 165 (494)
Q Consensus 126 ~~~~al~l~------p~-~~~a~~~~g~~~~-~~~~~~~A~~~~~~al 165 (494)
.+.+|.... |. .......-|..+. ..++|..|-.+|-+++
T Consensus 161 ~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 161 ALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 666655432 21 2223344577788 7999999999998886
No 328
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=71.97 E-value=5.4 Score=28.39 Aligned_cols=48 Identities=21% Similarity=0.392 Sum_probs=32.6
Q ss_pred CCcccccccccccccCcEEcCCCCcccHhhHHHhccC----CCCCCCCCccc
Q 011050 199 RTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDR----GNKCPLCRAVL 246 (494)
Q Consensus 199 ~~~~~~C~iC~~~~~~Pv~~~cgh~fc~~Cl~~~~~~----~~~CP~Cr~~~ 246 (494)
......|.+|.+--.--.--.|...|+..|+...+.. ...||.|....
T Consensus 9 ~~~~~~C~vC~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 9 LAPGARCGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp CCTTCCCTTTSCCTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCCCcCCCCCCCeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 3345679999864321112389999999999766543 35899998654
No 329
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=71.24 E-value=7.8 Score=28.19 Aligned_cols=35 Identities=11% Similarity=0.280 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcc
Q 011050 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPI 82 (494)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~ 82 (494)
..-...|..+...|++++|+.+|.+|+...|.=..
T Consensus 18 l~eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~ 52 (73)
T 3ax2_A 18 LEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ 52 (73)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence 34567999999999999999999999999876443
No 330
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=70.77 E-value=3.9 Score=40.41 Aligned_cols=61 Identities=11% Similarity=0.019 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHH
Q 011050 49 DLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAE 128 (494)
Q Consensus 49 ~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 128 (494)
.+...+..+...|++.+|+....+++..+|.+-.+|..+..+++..|+. .+|++.|+
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~-----------------------~~Al~~y~ 229 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQ-----------------------SDALGAYR 229 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCH-----------------------HHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-----------------------HHHHHHHH
Confidence 4455677788999999999999999999999999999999999999999 88988877
Q ss_pred HHhh
Q 011050 129 KLLN 132 (494)
Q Consensus 129 ~al~ 132 (494)
++-+
T Consensus 230 ~~r~ 233 (388)
T 2ff4_A 230 RVKT 233 (388)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7543
No 331
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=70.46 E-value=5.5 Score=29.61 Aligned_cols=48 Identities=23% Similarity=0.445 Sum_probs=33.1
Q ss_pred CCCCCcccccccccccccCcEEc---CCCCcccHhhHHHh----------------ccCCCCCCCCCc
Q 011050 196 TPERTDDFDCTLCLKLLYEPITT---PCGHSFCRSCLFQS----------------MDRGNKCPLCRA 244 (494)
Q Consensus 196 ~~~~~~~~~C~iC~~~~~~Pv~~---~cgh~fc~~Cl~~~----------------~~~~~~CP~Cr~ 244 (494)
.+....+-.|.+|...-.+ ..+ -|+..|+..||.+. ...+.+||.|..
T Consensus 9 ~e~~~~D~~C~VC~~~t~~-~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Cen 75 (89)
T 1wil_A 9 REPVVNDEMCDVCEVWTAE-SLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDN 75 (89)
T ss_dssp CCCCCCSCCCTTTCCCCSS-CCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCC
T ss_pred ccCCCCCcccCcccccccc-ceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccch
Confidence 3445577889999843332 333 58999999999884 123568999943
No 332
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=70.21 E-value=4.9 Score=30.14 Aligned_cols=36 Identities=28% Similarity=0.265 Sum_probs=31.4
Q ss_pred hhhHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcc
Q 011050 41 WDRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNI 76 (494)
Q Consensus 41 ~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~ 76 (494)
.+....+..+..+|...=..|+|++|+.+|.+|+++
T Consensus 7 ~~~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~ 42 (85)
T 2v6x_A 7 GDFLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDY 42 (85)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345667889999999999999999999999999984
No 333
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=69.64 E-value=7.1 Score=29.16 Aligned_cols=58 Identities=16% Similarity=0.054 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHhhh
Q 011050 120 AELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTT 185 (494)
Q Consensus 120 ~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~ 185 (494)
.+.|+..+.+|++.|..- .--.....|.+|++.|..+++..|+...-.....++...+
T Consensus 8 ~~~Ai~lv~~Ave~D~~g--------~y~eAl~lY~~aie~l~~~lk~e~d~~~k~~ir~K~~eY~ 65 (83)
T 2v6y_A 8 EDMARKYAILAVKADKEG--------KVEDAITYYKKAIEVLSQIIVLYPESVARTAYEQMINEYK 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc--------cHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 478999999998886421 1112335677888888888887776664333344444443
No 334
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=67.77 E-value=38 Score=25.71 Aligned_cols=35 Identities=14% Similarity=0.194 Sum_probs=28.4
Q ss_pred hhhHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhc
Q 011050 41 WDRYTHVFDLVQKGNRAFRESNFEEAISNYSRANN 75 (494)
Q Consensus 41 ~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~ 75 (494)
......|..+..+|...=..|+|++|+.+|..|++
T Consensus 9 ~~~l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie 43 (93)
T 1wfd_A 9 DSDSTAAVAVLKRAVELDAESRYQQALVCYQEGID 43 (93)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34566788888899888888999999888877776
No 335
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=67.65 E-value=4.1 Score=29.84 Aligned_cols=36 Identities=25% Similarity=0.529 Sum_probs=27.9
Q ss_pred CCcccccccccccccCcEEcC----CCCcccHhhHHHhcc
Q 011050 199 RTDDFDCTLCLKLLYEPITTP----CGHSFCRSCLFQSMD 234 (494)
Q Consensus 199 ~~~~~~C~iC~~~~~~Pv~~~----cgh~fc~~Cl~~~~~ 234 (494)
....+.|.+|.+-+.+--... =+|.||..|-.....
T Consensus 12 ~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk 51 (93)
T 2cs3_A 12 NSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIK 51 (93)
T ss_dssp SCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHH
T ss_pred CCCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHH
Confidence 456789999999998873333 489999999877654
No 336
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=67.07 E-value=6.1 Score=31.71 Aligned_cols=35 Identities=26% Similarity=0.393 Sum_probs=31.3
Q ss_pred hhHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcc
Q 011050 42 DRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNI 76 (494)
Q Consensus 42 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~ 76 (494)
.....|..+..+|...=..|+|++|+.+|.+|+++
T Consensus 13 ~~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~ 47 (117)
T 2cpt_A 13 PNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQY 47 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 46777889999999999999999999999999983
No 337
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=65.68 E-value=8.3 Score=29.60 Aligned_cols=38 Identities=11% Similarity=0.248 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccCCC
Q 011050 42 DRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPG 79 (494)
Q Consensus 42 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~ 79 (494)
...+--..-...|..++..|+++.|+.||.+|+...|.
T Consensus 15 ~~e~~Fl~eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 15 AVQKFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 33444456678999999999999999999999998665
No 338
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=64.49 E-value=42 Score=25.06 Aligned_cols=32 Identities=16% Similarity=0.272 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHhcc
Q 011050 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNI 76 (494)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~ 76 (494)
..+..+..+|..+=..|+|++|+.+|.+|+++
T Consensus 14 ~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 14 TAAATVLKRAVELDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34678889999999999999999999888763
No 339
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=63.03 E-value=12 Score=28.41 Aligned_cols=34 Identities=21% Similarity=0.314 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhc
Q 011050 42 DRYTHVFDLVQKGNRAFRESNFEEAISNYSRANN 75 (494)
Q Consensus 42 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~ 75 (494)
.....|..+-.+++.+.+.|+|++||.+..+|..
T Consensus 10 spLn~AH~~~RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 10 GPLNLAHQQSRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3455577788899999999999999999988765
No 340
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=62.77 E-value=18 Score=38.73 Aligned_cols=20 Identities=15% Similarity=0.209 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHcccc
Q 011050 147 ALILLERYDMARDAILSGLQ 166 (494)
Q Consensus 147 ~~~~~~~~~~A~~~~~~al~ 166 (494)
+|...|++++|++.|.+.-+
T Consensus 745 ~~~~~g~~~~a~~~~~~~~~ 764 (814)
T 3mkq_A 745 AYWIAGDIQGAKDLLIKSQR 764 (814)
T ss_dssp HHHHHTCHHHHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHHHcCC
Confidence 45667888888887776644
No 341
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=58.50 E-value=13 Score=33.44 Aligned_cols=74 Identities=15% Similarity=0.274 Sum_probs=40.0
Q ss_pred HHHHHccccCCCCCchhHHHHHHHHhhhhhhhccc-------cCCCCCCCcccccccccccccCcE----EcCCCCcccH
Q 011050 158 RDAILSGLQVDPFSNPLQASLQNLERTTASLIGRR-------IHGTPERTDDFDCTLCLKLLYEPI----TTPCGHSFCR 226 (494)
Q Consensus 158 ~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~C~iC~~~~~~Pv----~~~cgh~fc~ 226 (494)
+..+..++.-+|....+......++..--...... ........+...|..|...|.--. .-.||+.||.
T Consensus 110 i~~W~~~f~~~~~~~~i~~~y~~Lk~~G~~FP~~~e~~a~f~~~~~~~W~~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~ 189 (220)
T 1dvp_A 110 VQTWAYAFRSSDKYQAIKDTMTILKAKGHTFPELREADAMFTADTAPNWADGRVCHRCRVEFTFTNRKHHCRNCGQVFCG 189 (220)
T ss_dssp HHHHHHHTTTCSSCCHHHHHHHHHHHTTCCCCCCCC---CCCCSCCCCCCCCSBCTTTCCBCCSSSCCEECTTTCCEECS
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhhcCccccccccccccccccccccCCCCCccCCCCCccCCcccccccCCcCCEECh
Confidence 33444445556666656566555544332221110 111223445678999988775221 2479999999
Q ss_pred hhHHH
Q 011050 227 SCLFQ 231 (494)
Q Consensus 227 ~Cl~~ 231 (494)
.|...
T Consensus 190 ~Cs~~ 194 (220)
T 1dvp_A 190 QCTAK 194 (220)
T ss_dssp TTSCE
T ss_pred HHhCC
Confidence 98543
No 342
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=58.37 E-value=14 Score=27.72 Aligned_cols=34 Identities=24% Similarity=0.439 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccC
Q 011050 44 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIK 77 (494)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~ 77 (494)
.+++..+..+|.++|+.++|.+|...+.++..+.
T Consensus 50 e~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~t 83 (106)
T 2vkj_A 50 EKKARSLIAEGKDLFETANYGEALVFFEKALNLS 83 (106)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHhcchhHHHHHHHHHHccc
Confidence 3568889999999999999999999999998653
No 343
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=55.26 E-value=10 Score=27.90 Aligned_cols=30 Identities=13% Similarity=0.185 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhcc
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNI 76 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~ 76 (494)
.......|..+...|+|+.|+.+|+.+++.
T Consensus 12 i~e~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 12 IVENVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 556778899999999999999999999873
No 344
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=55.06 E-value=22 Score=26.42 Aligned_cols=57 Identities=16% Similarity=0.075 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHhhh
Q 011050 121 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTT 185 (494)
Q Consensus 121 ~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~ 185 (494)
+.|+..+.+|++.|... ..-....-|.+|++.|..+++..|+...-.....++.+.+
T Consensus 17 ~~Ai~lv~~Ave~D~~g--------~y~eAl~lY~~aie~l~~alk~e~d~~~k~~ir~K~~eY~ 73 (83)
T 2w2u_A 17 EMARKYAINAVKADKEG--------NAEEAITNYKKAIEVLAQLVSLYRDGSTAAIYEQMINEYK 73 (83)
T ss_dssp HHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHHHHHSTTSSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc--------cHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 78899999998886421 1122335567788888888877776554333333444333
No 345
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=54.64 E-value=11 Score=42.84 Aligned_cols=90 Identities=10% Similarity=-0.004 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHhccC-CCCc----------------------ccccChhHHHHHHHhhhccCCCCCc
Q 011050 50 LVQKGNRAFRESNFEEAISNYSRANNIK-PGDP----------------------IVLGNRSSAYIRISQFLKHRPPSAS 106 (494)
Q Consensus 50 ~~~~g~~~~~~~~~~~Ai~~y~~al~~~-p~~~----------------------~~~~~~a~~~~~~~~~~~~~~~~~~ 106 (494)
.+.+|..++..|++++|..+|.+|-.-- ..+. .+|.+.+..+.+.+.+
T Consensus 845 ~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~--------- 915 (1139)
T 4fhn_B 845 VYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAY--------- 915 (1139)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCC---------
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCH---------
Confidence 4778999999999999999999985321 1111 1223333333333334
Q ss_pred cccccCCCCCchhHHHHHHHHHHHhhccccch---H--HHHHHHHHHHHHHHHHHHHHHHH
Q 011050 107 EYRPLNGLDPTTHAELALKDAEKLLNLQSNSM---K--SHLLKANALILLERYDMARDAIL 162 (494)
Q Consensus 107 ~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~---~--a~~~~g~~~~~~~~~~~A~~~~~ 162 (494)
+.+++.+..|++..+... . -|.+.-..+..+|+|++|-..+.
T Consensus 916 --------------~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~ 962 (1139)
T 4fhn_B 916 --------------IDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALM 962 (1139)
T ss_dssp --------------HHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred --------------HHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 778888888887653222 1 35566667788888888877664
No 346
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=51.40 E-value=21 Score=36.38 Aligned_cols=86 Identities=12% Similarity=0.064 Sum_probs=67.1
Q ss_pred cChHHHHHHHHHHhcc--CCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhc--ccc
Q 011050 61 SNFEEAISNYSRANNI--KPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNL--QSN 136 (494)
Q Consensus 61 ~~~~~Ai~~y~~al~~--~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l--~p~ 136 (494)
++.++|...|.+.... .| |...|..+..+|.+.|++ ++|++.+++..+. .|
T Consensus 84 ~~l~~A~~lf~~M~~~G~~P-d~~tyn~lI~~~~~~g~~-----------------------~~A~~l~~~M~~~g~~P- 138 (501)
T 4g26_A 84 PGLSRGFDIFKQMIVDKVVP-NEATFTNGARLAVAKDDP-----------------------EMAFDMVKQMKAFGIQP- 138 (501)
T ss_dssp HHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHHTCH-----------------------HHHHHHHHHHHHTTCCC-
T ss_pred chHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHhcCCH-----------------------HHHHHHHHHHHHcCCCC-
Confidence 4467888888887654 33 566788888999999999 9999999987764 35
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHcccc--CCCCC
Q 011050 137 SMKSHLLKANALILLERYDMARDAILSGLQ--VDPFS 171 (494)
Q Consensus 137 ~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~p~~ 171 (494)
+...|..+-.+|...|+.++|.+.|.+..+ +.|+.
T Consensus 139 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~ 175 (501)
T 4g26_A 139 RLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEE 175 (501)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCH
T ss_pred ccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCH
Confidence 456777888889999999999999988755 34543
No 347
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=49.98 E-value=19 Score=36.79 Aligned_cols=55 Identities=15% Similarity=0.120 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhhcc-----ccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhH
Q 011050 121 ELALKDAEKLLNLQ-----SNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQ 175 (494)
Q Consensus 121 ~~a~~~~~~al~l~-----p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~ 175 (494)
+.|.....++.-.. +....-+|+.|.++...++|.+|..++..|++..|.+..+.
T Consensus 248 ~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~ 307 (523)
T 4b4t_S 248 DSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSL 307 (523)
T ss_dssp TTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCS
T ss_pred HHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhh
Confidence 66767677764221 12355678899999999999999999999999988766443
No 348
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=49.85 E-value=18 Score=32.57 Aligned_cols=33 Identities=24% Similarity=0.531 Sum_probs=23.2
Q ss_pred CCcccccccccccccCcE----EcCCCCcccHhhHHH
Q 011050 199 RTDDFDCTLCLKLLYEPI----TTPCGHSFCRSCLFQ 231 (494)
Q Consensus 199 ~~~~~~C~iC~~~~~~Pv----~~~cgh~fc~~Cl~~ 231 (494)
..+.-.|..|...|.--. .-.||+.||..|-..
T Consensus 161 W~~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 161 WVDAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CCCCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred cccCCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 445568999987766321 247999999999653
No 349
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=48.56 E-value=33 Score=26.03 Aligned_cols=48 Identities=19% Similarity=0.154 Sum_probs=32.7
Q ss_pred hhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCch
Q 011050 118 THAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNP 173 (494)
Q Consensus 118 ~~~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~ 173 (494)
...+.|+..+.+|++.|..- .--.....|.+|++.|..+++..|+...
T Consensus 10 ~~l~~Ai~lv~~Ave~D~~g--------~y~eAl~~Y~~Aie~l~~alk~e~~~~~ 57 (93)
T 1wfd_A 10 SDSTAAVAVLKRAVELDAES--------RYQQALVCYQEGIDMLLQVLKGTKESSK 57 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHHHHTCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHhC--------CHHHHHHHHHHHHHHHHHHHHHCCCHHH
Confidence 34488999999999887421 1112335677888888888887776543
No 350
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=48.48 E-value=11 Score=28.25 Aligned_cols=45 Identities=24% Similarity=0.614 Sum_probs=32.5
Q ss_pred ccccccccccccC-----cE--EcCCCCcccHhhHHHhccCCC-CCCCCCccc
Q 011050 202 DFDCTLCLKLLYE-----PI--TTPCGHSFCRSCLFQSMDRGN-KCPLCRAVL 246 (494)
Q Consensus 202 ~~~C~iC~~~~~~-----Pv--~~~cgh~fc~~Cl~~~~~~~~-~CP~Cr~~~ 246 (494)
.-.|.||.+-.-- +. .-.|+...|+.|++--...+. .||.|+...
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrY 68 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRY 68 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcc
Confidence 3579999875321 21 237999999999987666554 699999875
No 351
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=48.42 E-value=20 Score=30.14 Aligned_cols=68 Identities=7% Similarity=-0.109 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHH
Q 011050 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDA 127 (494)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 127 (494)
.-|..-| .+...+|.++|-..|+.++.+..+.+.+|...|..-.+.|+. ..|.+.+
T Consensus 62 ~LWIrYA-~~~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl-----------------------~kARkIL 117 (161)
T 4h7y_A 62 RIQVRFA-ELKAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNV-----------------------KKSKQLL 117 (161)
T ss_dssp HHHHHHH-HHHHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCH-----------------------HHHHHHH
T ss_pred HHHHHHH-HHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccH-----------------------HHHHHHH
Confidence 3344444 335558999999999999998777778888888888888888 9999999
Q ss_pred HHHhhccccchH
Q 011050 128 EKLLNLQSNSMK 139 (494)
Q Consensus 128 ~~al~l~p~~~~ 139 (494)
.+|+.+.|...+
T Consensus 118 g~AiG~~~k~~~ 129 (161)
T 4h7y_A 118 QKAVERGAVPLE 129 (161)
T ss_dssp HHHHHTTCBCHH
T ss_pred HHHhccCCCcHH
Confidence 999999997644
No 352
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=47.37 E-value=12 Score=27.12 Aligned_cols=48 Identities=17% Similarity=0.280 Sum_probs=33.4
Q ss_pred CCcccccccccccccCc-EEc--CCCCcccHhhHHHhcc----CCCCCCCCCccc
Q 011050 199 RTDDFDCTLCLKLLYEP-ITT--PCGHSFCRSCLFQSMD----RGNKCPLCRAVL 246 (494)
Q Consensus 199 ~~~~~~C~iC~~~~~~P-v~~--~cgh~fc~~Cl~~~~~----~~~~CP~Cr~~~ 246 (494)
......|.+|......- ... .|...|+..|+..... ....||.|+..+
T Consensus 15 ~~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 15 GNQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKI 69 (75)
T ss_dssp SCEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHH
T ss_pred CCCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCch
Confidence 34556799998765432 222 7999999999976443 245799998765
No 353
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=47.36 E-value=10 Score=30.40 Aligned_cols=47 Identities=15% Similarity=0.169 Sum_probs=37.5
Q ss_pred ccccccccccccc---CcEEcCCCCcccHhhHHHhccCCCCCCCCCcccc
Q 011050 201 DDFDCTLCLKLLY---EPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 247 (494)
Q Consensus 201 ~~~~C~iC~~~~~---~Pv~~~cgh~fc~~Cl~~~~~~~~~CP~Cr~~~~ 247 (494)
..|.|..|...|. ......-|..||..|....+.....|..|..++.
T Consensus 31 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~ 80 (122)
T 1m3v_A 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGS 80 (122)
T ss_dssp HHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSC
T ss_pred hCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcC
Confidence 4589999999886 3455688999999999887765458999998774
No 354
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.33 E-value=39 Score=26.81 Aligned_cols=42 Identities=17% Similarity=0.113 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCC
Q 011050 121 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPF 170 (494)
Q Consensus 121 ~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~ 170 (494)
.+|.....+||.+|-. |.--.++..|.+.+..+.+++.+..+
T Consensus 20 ~~AF~~Is~AL~~DE~--------g~k~~Al~lYk~GI~eLe~Gl~I~~~ 61 (116)
T 2dl1_A 20 KKAFLFVNKGLNTDEL--------GQKEEAKNYYKQGIGHLLRGISISSK 61 (116)
T ss_dssp HHHHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred HHHHHHHHHHhhhhhc--------CCHHHHHHHHHHHHHHHHHhcccccc
Confidence 8899999999998863 33444566778888889999888764
No 355
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=44.86 E-value=27 Score=36.64 Aligned_cols=84 Identities=11% Similarity=-0.040 Sum_probs=56.3
Q ss_pred HhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhccccch
Q 011050 59 RESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSM 138 (494)
Q Consensus 59 ~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~ 138 (494)
..+...++...+.++.....+ ..+...++...+..+++ ..|...+...-.-.....
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~r~Alr~~d~-----------------------~~a~~~~~~l~~~~~~~~ 319 (618)
T 1qsa_A 264 GNDVTDEQAKWRDDAIMRSQS-TSLIERRVRMALGTGDR-----------------------RGLNTWLARLPMEAKEKD 319 (618)
T ss_dssp STTCCHHHHHHHHHHHHTCCC-HHHHHHHHHHHHHHTCH-----------------------HHHHHHHHHSCTTGGGSH
T ss_pred HcCCChHHHHHHHhccccCCC-hHHHHHHHHHHHHCCCH-----------------------HHHHHHHHHccccccccH
Confidence 334244555566655443322 22233444444566788 788777776655444568
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccc
Q 011050 139 KSHLLKANALILLERYDMARDAILSGLQ 166 (494)
Q Consensus 139 ~a~~~~g~~~~~~~~~~~A~~~~~~al~ 166 (494)
.+.|++|.++..+|+.++|...|.++.+
T Consensus 320 r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 320 EWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 8899999999999999999999999875
No 356
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=44.66 E-value=4.1 Score=28.44 Aligned_cols=33 Identities=24% Similarity=0.584 Sum_probs=20.3
Q ss_pred ccccccccccCc-----EE-cC--CCCcccHhhHHHhccCC
Q 011050 204 DCTLCLKLLYEP-----IT-TP--CGHSFCRSCLFQSMDRG 236 (494)
Q Consensus 204 ~C~iC~~~~~~P-----v~-~~--cgh~fc~~Cl~~~~~~~ 236 (494)
.||-|...+... ++ .. ||+.||..|...|...+
T Consensus 8 ~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~~ 48 (60)
T 1wd2_A 8 ECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHG 48 (60)
T ss_dssp CCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGGG
T ss_pred ECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccCC
Confidence 566666544432 22 23 88888888887766544
No 357
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=43.44 E-value=17 Score=26.41 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHH
Q 011050 142 LLKANALILLERYDMARDAILSGLQVDPFSNPLQASL 178 (494)
Q Consensus 142 ~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~ 178 (494)
..+|..+...|++++|..+|-+|+.+.|.-.++...+
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL~i~ 57 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVL 57 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3578999999999999999999999999888765444
No 358
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=41.60 E-value=14 Score=35.01 Aligned_cols=46 Identities=17% Similarity=0.267 Sum_probs=34.1
Q ss_pred CcccccccccccccCcEEc----CCC--CcccHhhHHHhccCCCCCCCCCcc
Q 011050 200 TDDFDCTLCLKLLYEPITT----PCG--HSFCRSCLFQSMDRGNKCPLCRAV 245 (494)
Q Consensus 200 ~~~~~C~iC~~~~~~Pv~~----~cg--h~fc~~Cl~~~~~~~~~CP~Cr~~ 245 (494)
+..-.||+|...-.--+.. .-| +-+|.-|-..|.-....||.|...
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 6778999999754433332 234 688999988887777789999874
No 359
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=41.55 E-value=19 Score=24.96 Aligned_cols=45 Identities=24% Similarity=0.521 Sum_probs=31.4
Q ss_pred CCCcccccccccccccCcEE--cCCCCcccHhhHHHhcc----CCCCCCCCCc
Q 011050 198 ERTDDFDCTLCLKLLYEPIT--TPCGHSFCRSCLFQSMD----RGNKCPLCRA 244 (494)
Q Consensus 198 ~~~~~~~C~iC~~~~~~Pv~--~~cgh~fc~~Cl~~~~~----~~~~CP~Cr~ 244 (494)
....+..|.+|...- -+. -.|-..|+..|+...+. ....||.|..
T Consensus 7 ~~~~~~~C~vC~~~g--~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 7 ETDHQDYCEVCQQGG--EIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SSCCCSSCTTTSCCS--SEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred cCCCCCCCccCCCCC--cEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 344567799998632 233 38999999999987543 2357999975
No 360
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=40.52 E-value=88 Score=29.92 Aligned_cols=117 Identities=9% Similarity=0.116 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHH-HhccCCC-CcccccChhHHHHHHHhhhccCCCCCccc-----cccCCCCC
Q 011050 44 YTHVFDLVQKGNRAFRESNFEEAISNYSR-ANNIKPG-DPIVLGNRSSAYIRISQFLKHRPPSASEY-----RPLNGLDP 116 (494)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~-al~~~p~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 116 (494)
+.....++..++.+.++++|++|++.... |..+--. ....-..++. +-+.-|.++....+.+. +.+..+++
T Consensus 32 YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~--llvevy~~~~~~~~~~~~~rL~~L~~~~~~ 109 (336)
T 3lpz_A 32 YEAAQETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAV--LLVDTFRQAGQRVDGASRGKLLGCLRLFQP 109 (336)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH--HHHHHHHHHTCCCCHHHHHHHHHHHTTSCT
T ss_pred cHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHH--HHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Confidence 44455677888889999999999985433 3332111 1111111111 11111222222111111 01222333
Q ss_pred c-----hhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 011050 117 T-----THAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAIL 162 (494)
Q Consensus 117 ~-----~~~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~ 162 (494)
. +.+.+|+....+.=...-.++.-|...|..|..-+++.+|..+|.
T Consensus 110 ~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i 160 (336)
T 3lpz_A 110 GEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV 160 (336)
T ss_dssp TCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 2 233455554444222334577889999999999999999999985
No 361
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=40.52 E-value=5.1 Score=30.63 Aligned_cols=40 Identities=33% Similarity=0.721 Sum_probs=27.6
Q ss_pred ccccccccccccCcEEcCCCCcccHhhHHHhccCCCCCCCCCccc
Q 011050 202 DFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVL 246 (494)
Q Consensus 202 ~~~C~iC~~~~~~Pv~~~cgh~fc~~Cl~~~~~~~~~CP~Cr~~~ 246 (494)
+..||.|...+.- .=|+.+|..|-.. +.....||.|..+|
T Consensus 32 ~~~CP~Cq~eL~~----~g~~~hC~~C~~~-f~~~a~CPdC~q~L 71 (101)
T 2jne_A 32 ELHCPQCQHVLDQ----DNGHARCRSCGEF-IEMKALCPDCHQPL 71 (101)
T ss_dssp CCBCSSSCSBEEE----ETTEEEETTTCCE-EEEEEECTTTCSBC
T ss_pred cccCccCCCccee----cCCEEECccccch-hhccccCcchhhHH
Confidence 4889999976542 2355569999443 33345799999987
No 362
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=39.90 E-value=44 Score=24.73 Aligned_cols=47 Identities=11% Similarity=0.121 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCc
Q 011050 118 THAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSN 172 (494)
Q Consensus 118 ~~~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~ 172 (494)
+....|+....+|++.|... .--....-|.+|++.|..+++..|+..
T Consensus 8 ~~l~~A~~l~~~Av~~D~~g--------~y~eAl~~Y~~aie~l~~a~k~e~~~~ 54 (85)
T 2v6x_A 8 DFLTKGIELVQKAIDLDTAT--------QYEEAYTAYYNGLDYLMLALKYEKNPK 54 (85)
T ss_dssp CHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 34478888888888765321 111233456677777777777666544
No 363
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=38.57 E-value=15 Score=25.55 Aligned_cols=47 Identities=19% Similarity=0.299 Sum_probs=30.9
Q ss_pred CCcccccccccccccCcEEcCCCCcccHhhHHHhccC----CCCCCCCCcc
Q 011050 199 RTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDR----GNKCPLCRAV 245 (494)
Q Consensus 199 ~~~~~~C~iC~~~~~~Pv~~~cgh~fc~~Cl~~~~~~----~~~CP~Cr~~ 245 (494)
...+..|.+|...-.--..-.|...|+..|+...+.. ...||.|...
T Consensus 6 d~~~~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 6 DHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp CSSCSSCTTTCCCSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred cCCCCcCCCCCCCCCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 3456679999863221112379999999999864432 3579999864
No 364
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=38.52 E-value=16 Score=29.40 Aligned_cols=48 Identities=21% Similarity=0.425 Sum_probs=37.9
Q ss_pred Cccccccccccccc---CcEEcCCCCcccHhhHHHhccCCCCCCCCCcccc
Q 011050 200 TDDFDCTLCLKLLY---EPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 247 (494)
Q Consensus 200 ~~~~~C~iC~~~~~---~Pv~~~cgh~fc~~Cl~~~~~~~~~CP~Cr~~~~ 247 (494)
...|.|..|...|. .+....-|..||..|....+.....|..|..++.
T Consensus 27 ~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~ 77 (131)
T 2xjy_A 27 EDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIR 77 (131)
T ss_dssp TTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEEC
T ss_pred HHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccC
Confidence 35689999999885 3566788999999999876654448999998774
No 365
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=38.14 E-value=9.9 Score=29.06 Aligned_cols=11 Identities=45% Similarity=1.068 Sum_probs=10.2
Q ss_pred ccHhhHHHhcc
Q 011050 224 FCRSCLFQSMD 234 (494)
Q Consensus 224 fc~~Cl~~~~~ 234 (494)
||+.||..|..
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999985
No 366
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=37.99 E-value=9.9 Score=29.10 Aligned_cols=11 Identities=45% Similarity=1.020 Sum_probs=10.2
Q ss_pred ccHhhHHHhcc
Q 011050 224 FCRSCLFQSMD 234 (494)
Q Consensus 224 fc~~Cl~~~~~ 234 (494)
||+.||.+|..
T Consensus 43 FCRNCLskWy~ 53 (105)
T 2o35_A 43 FCRNCLSNWYR 53 (105)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999985
No 367
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=37.29 E-value=26 Score=37.05 Aligned_cols=51 Identities=8% Similarity=0.124 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhh
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQF 97 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~ 97 (494)
+.....+|..++..|+|.-|....+.++..+|++..+..-+|.+|-++|.-
T Consensus 449 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~ 499 (658)
T 2cfu_A 449 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQ 499 (658)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHh
Confidence 456788999999999999999999999999999999988888888888765
No 368
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=37.20 E-value=25 Score=34.32 Aligned_cols=48 Identities=19% Similarity=0.388 Sum_probs=33.4
Q ss_pred CCCcccccccccccccCcEEc--CCCCcccHhhHHHhccC----------CCCCCCCCcc
Q 011050 198 ERTDDFDCTLCLKLLYEPITT--PCGHSFCRSCLFQSMDR----------GNKCPLCRAV 245 (494)
Q Consensus 198 ~~~~~~~C~iC~~~~~~Pv~~--~cgh~fc~~Cl~~~~~~----------~~~CP~Cr~~ 245 (494)
....+..|.+|-+--.--..= .|...||..||...+.. ...|-.|.-.
T Consensus 89 ~DG~~~yCr~C~~Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 89 DDGYQSYCSICCSGETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp SSSSBCSCTTTCCCSSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CCCCcccceEcCCCCeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 344567888888654322223 89999999999987643 3579999753
No 369
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=37.16 E-value=6.9 Score=28.98 Aligned_cols=20 Identities=35% Similarity=0.986 Sum_probs=14.8
Q ss_pred CCCCcccHhhHHHhccCCCCCC
Q 011050 219 PCGHSFCRSCLFQSMDRGNKCP 240 (494)
Q Consensus 219 ~cgh~fc~~Cl~~~~~~~~~CP 240 (494)
.||+.||..|...|-. ..|.
T Consensus 55 ~C~~~FC~~C~~~wH~--~~C~ 74 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE--GECS 74 (80)
T ss_dssp CCSCCEETTTTEECCS--SCSS
T ss_pred CCCCeeccccCccccC--Cccc
Confidence 6999999999876533 4454
No 370
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.48 E-value=48 Score=26.30 Aligned_cols=34 Identities=26% Similarity=0.324 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhc
Q 011050 42 DRYTHVFDLVQKGNRAFRESNFEEAISNYSRANN 75 (494)
Q Consensus 42 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~ 75 (494)
...+.|..++.+|...=..|+-+.|+.+|.+.+.
T Consensus 17 ~~h~~AF~~Is~AL~~DE~g~k~~Al~lYk~GI~ 50 (116)
T 2dl1_A 17 EAYKKAFLFVNKGLNTDELGQKEEAKNYYKQGIG 50 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence 4556788888888888888999999999988876
No 371
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=36.47 E-value=1.2e+02 Score=28.50 Aligned_cols=119 Identities=16% Similarity=0.017 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHH-hcc-CCCCcccccChhHHHHHHHhhhccCCCCCccccc----cC-CCCC
Q 011050 44 YTHVFDLVQKGNRAFRESNFEEAISNYSRA-NNI-KPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRP----LN-GLDP 116 (494)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~a-l~~-~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~ 116 (494)
+.....++..++.+.++++|++|++..... ..+ .-+....-..+|..+ +.-|.++....+.+... ++ ..++
T Consensus 30 YEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~ll--vev~~~~~~~~~~~~~~rl~~l~~~~p~ 107 (312)
T 2wpv_A 30 YEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYL--LEVYDLAEVKVDDISVARLVRLIAELDP 107 (312)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH--HHHHHHTTCCCSHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHH--HHHHHHcCCCCCHHHHHHHHHHHHHCCC
Confidence 333456677888888999999999874443 332 111111111111111 11122222222211110 11 1122
Q ss_pred c-----hhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 011050 117 T-----THAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSG 164 (494)
Q Consensus 117 ~-----~~~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~a 164 (494)
. +.+.+|+....+.-...-.++.-|...|..|..-+++.+|..+|..+
T Consensus 108 ~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~ 160 (312)
T 2wpv_A 108 SEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLG 160 (312)
T ss_dssp TCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred CCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhC
Confidence 2 23344544444443323357888999999999999999999998744
No 372
>2oo2_A Hypothetical protein AF_1782; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: a.8.11.1
Probab=36.46 E-value=50 Score=24.69 Aligned_cols=33 Identities=3% Similarity=-0.030 Sum_probs=28.5
Q ss_pred chhhHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Q 011050 40 PWDRYTHVFDLVQKGNRAFRESNFEEAISNYSR 72 (494)
Q Consensus 40 ~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ 72 (494)
..+....+..+++.|.-|+++||+..|+.++.=
T Consensus 28 a~~~l~mA~~Y~~Da~~fl~kGD~v~Ala~isY 60 (86)
T 2oo2_A 28 DEGFMRNIEAYISDSRYFLEKGDLVRAFECVVW 60 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 467788899999999999999999999887643
No 373
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=36.36 E-value=5.7 Score=29.48 Aligned_cols=39 Identities=26% Similarity=0.586 Sum_probs=24.1
Q ss_pred cccccccccccCcEEcCCCCcccHhhHHHhccCCCCCCCCCccc
Q 011050 203 FDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVL 246 (494)
Q Consensus 203 ~~C~iC~~~~~~Pv~~~cgh~fc~~Cl~~~~~~~~~CP~Cr~~~ 246 (494)
..||.|...+.- .=++.+|..|-...... ..||.|.+++
T Consensus 3 ~~CP~C~~~l~~----~~~~~~C~~C~~~~~~~-afCPeCgq~L 41 (81)
T 2jrp_A 3 ITCPVCHHALER----NGDTAHCETCAKDFSLQ-ALCPDCRQPL 41 (81)
T ss_dssp CCCSSSCSCCEE----CSSEEECTTTCCEEEEE-EECSSSCSCC
T ss_pred CCCCCCCCcccc----CCCceECccccccCCCc-ccCcchhhHH
Confidence 568888865442 23355577775443333 3788888876
No 374
>2pmr_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.32A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.8.11.1
Probab=36.17 E-value=49 Score=24.79 Aligned_cols=32 Identities=0% Similarity=-0.049 Sum_probs=27.5
Q ss_pred chhhHHHHHHHHHHHHHHHHhcChHHHHHHHH
Q 011050 40 PWDRYTHVFDLVQKGNRAFRESNFEEAISNYS 71 (494)
Q Consensus 40 ~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~ 71 (494)
..+....+..+++.|.-|+++||+..|+.++.
T Consensus 32 a~~~l~mA~~Y~~Da~~fl~kGD~v~Ala~is 63 (87)
T 2pmr_A 32 EEAVVERALNYRDDSVYYLEKGDHITSFGCIT 63 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35677789999999999999999999988764
No 375
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=35.77 E-value=32 Score=23.78 Aligned_cols=39 Identities=28% Similarity=0.558 Sum_probs=25.8
Q ss_pred ccccccccccCcE---EcCCCCcccHhhHHHhccCCCCCCCC
Q 011050 204 DCTLCLKLLYEPI---TTPCGHSFCRSCLFQSMDRGNKCPLC 242 (494)
Q Consensus 204 ~C~iC~~~~~~Pv---~~~cgh~fc~~Cl~~~~~~~~~CP~C 242 (494)
.|--|...+.+.. -..|++.||.+|=.-.-..-..||-|
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred cccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 3777887776554 24899999999932211223469987
No 376
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=35.60 E-value=12 Score=33.29 Aligned_cols=45 Identities=18% Similarity=0.380 Sum_probs=30.7
Q ss_pred cccccccccccccCcEEcCCCCcccHhhHHHhcc----CCCCCCCCCcc
Q 011050 201 DDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMD----RGNKCPLCRAV 245 (494)
Q Consensus 201 ~~~~C~iC~~~~~~Pv~~~cgh~fc~~Cl~~~~~----~~~~CP~Cr~~ 245 (494)
.+..|.+|..--.--..=.|...|+..|+...+. ....||.|+..
T Consensus 6 ~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 54 (207)
T 3u5n_A 6 NEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDI 54 (207)
T ss_dssp SCSSBTTTCCCEEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCCCCCCCCCCceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCc
Confidence 4456999985433111237999999999976544 23689999875
No 377
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=35.44 E-value=29 Score=28.72 Aligned_cols=46 Identities=20% Similarity=0.515 Sum_probs=32.2
Q ss_pred CCcccccccccccccCcEEcCCCCcccHhhHHHhcc-----------CCCCCCCCCc
Q 011050 199 RTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMD-----------RGNKCPLCRA 244 (494)
Q Consensus 199 ~~~~~~C~iC~~~~~~Pv~~~cgh~fc~~Cl~~~~~-----------~~~~CP~Cr~ 244 (494)
...+..|.+|.+--.--..-.|-..||..||...+. ....||.|+.
T Consensus 60 Dg~~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 60 DGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TSCBCSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCeecccCCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 445667999986443222248999999999986542 2467999974
No 378
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=35.42 E-value=11 Score=32.84 Aligned_cols=48 Identities=19% Similarity=0.431 Sum_probs=37.7
Q ss_pred CcccccccccccccC---cEEcCCCCcccHhhHHHhccCCCCCCCCCcccc
Q 011050 200 TDDFDCTLCLKLLYE---PITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 247 (494)
Q Consensus 200 ~~~~~C~iC~~~~~~---Pv~~~cgh~fc~~Cl~~~~~~~~~CP~Cr~~~~ 247 (494)
...|.|..|...|.. +....-|..||..|....+.....|..|...+.
T Consensus 30 ~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~ 80 (188)
T 1rut_X 30 SRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIP 80 (188)
T ss_dssp GGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEEC
T ss_pred ccCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccc
Confidence 367899999988874 566688999999998876643337999998774
No 379
>1erd_A Pheromone ER-2; NMR {Euplotes raikovi} SCOP: a.10.1.1
Probab=34.54 E-value=8.6 Score=22.89 Aligned_cols=15 Identities=27% Similarity=0.707 Sum_probs=12.1
Q ss_pred cCCCCcccHhhHHHh
Q 011050 218 TPCGHSFCRSCLFQS 232 (494)
Q Consensus 218 ~~cgh~fc~~Cl~~~ 232 (494)
.+|.|++|..|-...
T Consensus 10 ascehtmcgycqgpl 24 (40)
T 1erd_A 10 ASCEHTMCGYCQGPL 24 (40)
T ss_dssp HHTCGGGGGGSCHHH
T ss_pred HhccccccccccCCe
Confidence 489999999996553
No 380
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=34.26 E-value=25 Score=28.86 Aligned_cols=31 Identities=23% Similarity=0.520 Sum_probs=20.9
Q ss_pred Cccccccccccccc---Cc--EEcCCCCcccHhhHH
Q 011050 200 TDDFDCTLCLKLLY---EP--ITTPCGHSFCRSCLF 230 (494)
Q Consensus 200 ~~~~~C~iC~~~~~---~P--v~~~cgh~fc~~Cl~ 230 (494)
...-.|.+|...|. ++ +...|.|.+|.+|-.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 35678999998762 22 335788888887743
No 381
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=34.04 E-value=63 Score=25.66 Aligned_cols=48 Identities=17% Similarity=0.106 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCch
Q 011050 118 THAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNP 173 (494)
Q Consensus 118 ~~~~~a~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~ 173 (494)
.....|+..+.+|++.|-. |..-.....|.+|++.|..+++..+.+..
T Consensus 13 ~~l~kAi~lv~~Ave~D~a--------g~y~eAl~lY~~Aie~l~~alk~e~~~~~ 60 (117)
T 2cpt_A 13 PNLQKAIDLASKAAQEDKA--------GNYEEALQLYQHAVQYFLHVVKYEAQGDK 60 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHHHHHHHHTSCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHc--------cCHHHHHHHHHHHHHHHHHHHHhccCCHH
Confidence 3458888999999876531 11122345677888888888887765554
No 382
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=34.03 E-value=29 Score=22.84 Aligned_cols=41 Identities=24% Similarity=0.621 Sum_probs=26.4
Q ss_pred cccccccccc-CcEE--cCCCCcccHhhHHHhccC----CCCCCCCCc
Q 011050 204 DCTLCLKLLY-EPIT--TPCGHSFCRSCLFQSMDR----GNKCPLCRA 244 (494)
Q Consensus 204 ~C~iC~~~~~-~Pv~--~~cgh~fc~~Cl~~~~~~----~~~CP~Cr~ 244 (494)
.|.+|...-. +.+. -.|...|+..|+...+.. ...||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 3667765432 1222 279999999999754432 357999975
No 383
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=33.25 E-value=62 Score=32.00 Aligned_cols=68 Identities=13% Similarity=0.016 Sum_probs=54.6
Q ss_pred CCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhccc---cchHHHHHHHHHHHHHHH
Q 011050 77 KPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQS---NSMKSHLLKANALILLER 153 (494)
Q Consensus 77 ~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p---~~~~a~~~~g~~~~~~~~ 153 (494)
+.....++..+|..|++.|++ .+|++.+.++..... .-...++....++...++
T Consensus 127 e~e~~~~~~~la~~~~~~Gd~-----------------------~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d 183 (429)
T 4b4t_R 127 ELEQAQAWINLGEYYAQIGDK-----------------------DNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYND 183 (429)
T ss_dssp CCCCSSCCHHHHHHHHHHCCC-----------------------TTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHcCCH-----------------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcc
Confidence 334456888899999999999 899998888877542 345677788888889999
Q ss_pred HHHHHHHHHccccC
Q 011050 154 YDMARDAILSGLQV 167 (494)
Q Consensus 154 ~~~A~~~~~~al~l 167 (494)
+..+...+.++-.+
T Consensus 184 ~~~~~~~~~ka~~~ 197 (429)
T 4b4t_R 184 QLYVKEKLEAVNSM 197 (429)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998554
No 384
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=33.03 E-value=1.1e+02 Score=30.32 Aligned_cols=97 Identities=11% Similarity=-0.046 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhcc----CCCC--cccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhH
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNI----KPGD--PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHA 120 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~----~p~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (494)
+.-....+..++..|+|.+|.........- ++.. ..++..-...|+..++|
T Consensus 137 arl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~----------------------- 193 (445)
T 4b4t_P 137 ARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDY----------------------- 193 (445)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCH-----------------------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCH-----------------------
Confidence 444566789999999999999988776421 1111 24555566778888888
Q ss_pred HHHHHHHHHHhh---cccc--ch--HHHHHHHHHHHHHHHHHHHHHHHHcccc
Q 011050 121 ELALKDAEKLLN---LQSN--SM--KSHLLKANALILLERYDMARDAILSGLQ 166 (494)
Q Consensus 121 ~~a~~~~~~al~---l~p~--~~--~a~~~~g~~~~~~~~~~~A~~~~~~al~ 166 (494)
..|...++++.. -.+. .. ..+...|..+...++|.+|-.+|..++.
T Consensus 194 ~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 194 SQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 777777776532 1122 22 2344567778889999999999988875
No 385
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=32.91 E-value=91 Score=30.55 Aligned_cols=97 Identities=16% Similarity=0.147 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHhccC----------------------CCCc-------------------c----
Q 011050 48 FDLVQKGNRAFRESNFEEAISNYSRANNIK----------------------PGDP-------------------I---- 82 (494)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~----------------------p~~~-------------------~---- 82 (494)
......|..+.+.|++++-..........- |+.. .
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788899999999988777776554332 2111 1
Q ss_pred -cccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhhc----cc--cchHHHHHHHHHHHHHHHHH
Q 011050 83 -VLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNL----QS--NSMKSHLLKANALILLERYD 155 (494)
Q Consensus 83 -~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l----~p--~~~~a~~~~g~~~~~~~~~~ 155 (494)
+-.++|..|+..|+| .+|++.+.+.++- |. .-.+.|......|..++++.
T Consensus 100 ~l~~kL~~l~~~~~~y-----------------------~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~ 156 (394)
T 3txn_A 100 SLEARLIALYFDTALY-----------------------TEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLP 156 (394)
T ss_dssp HHHHHHHHHHHHTTCH-----------------------HHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhhhH-----------------------HHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHH
Confidence 112567777888888 8887777666653 21 23456777778888899999
Q ss_pred HHHHHHHccccC
Q 011050 156 MARDAILSGLQV 167 (494)
Q Consensus 156 ~A~~~~~~al~l 167 (494)
++.+.|.+|.+.
T Consensus 157 k~k~~l~~a~~~ 168 (394)
T 3txn_A 157 KARAALTSARTT 168 (394)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999888888654
No 386
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=32.79 E-value=47 Score=35.32 Aligned_cols=19 Identities=11% Similarity=0.079 Sum_probs=13.0
Q ss_pred CCcccccChhHHHHHHHhh
Q 011050 79 GDPIVLGNRSSAYIRISQF 97 (494)
Q Consensus 79 ~~~~~~~~~a~~~~~~~~~ 97 (494)
++...|.++|..+.+.+++
T Consensus 679 ~~~~~W~~la~~al~~~~~ 697 (814)
T 3mkq_A 679 SAEMKWRALGDASLQRFNF 697 (814)
T ss_dssp CCHHHHHHHHHHHHHTTCH
T ss_pred CcHhHHHHHHHHHHHcCCH
Confidence 4556677777777777776
No 387
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=32.32 E-value=17 Score=31.53 Aligned_cols=44 Identities=20% Similarity=0.401 Sum_probs=30.2
Q ss_pred ccccccccccccCcEEcCCCCcccHhhHHHhccC----CCCCCCCCcc
Q 011050 202 DFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDR----GNKCPLCRAV 245 (494)
Q Consensus 202 ~~~C~iC~~~~~~Pv~~~cgh~fc~~Cl~~~~~~----~~~CP~Cr~~ 245 (494)
+..|.+|..--.--..-.|...|+..|+...+.. ...||.|+..
T Consensus 4 ~~~C~~C~~~g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~ 51 (184)
T 3o36_A 4 EDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDL 51 (184)
T ss_dssp CSSCTTTCCCSSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCccccCCCCCeeeecCCCCcccCccccCCCCCCCCCCCEECccccCc
Confidence 4458889865332222379999999998765442 3679999874
No 388
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=31.41 E-value=83 Score=26.07 Aligned_cols=64 Identities=9% Similarity=-0.093 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHH-HhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHH
Q 011050 47 VFDLVQKGNRAF-RESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (494)
Q Consensus 47 ~~~~~~~g~~~~-~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (494)
..+++..|..+. .+|+-++--..+...+.-.+-++.++..+|.+|-++|+- .+|.+
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~-----------------------r~a~e 146 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDE-----------------------RDATT 146 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCH-----------------------HHHHH
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcch-----------------------hhHHH
Confidence 346777777665 556666666667776777777799999999999999999 88888
Q ss_pred HHHHHhhc
Q 011050 126 DAEKLLNL 133 (494)
Q Consensus 126 ~~~~al~l 133 (494)
...+|.+.
T Consensus 147 Ll~~AC~k 154 (172)
T 1wy6_A 147 LLIEACKK 154 (172)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 88888764
No 389
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=30.91 E-value=39 Score=25.45 Aligned_cols=34 Identities=15% Similarity=0.182 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHHHHHHHh---cChHHHHHHHHHHhc
Q 011050 42 DRYTHVFDLVQKGNRAFRE---SNFEEAISNYSRANN 75 (494)
Q Consensus 42 ~~~~~~~~~~~~g~~~~~~---~~~~~Ai~~y~~al~ 75 (494)
...+.|..++++|...=.. |+-+.|+.+|.+.+.
T Consensus 11 ~~h~~AF~~Is~aL~~DE~~~~G~k~~A~~~YkkGi~ 47 (89)
T 3eab_A 11 VFHKQAFEYISIALRIDEDEKAGQKEQAVEWYKKGIE 47 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCSSSGGGSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHH
Confidence 4456678888888888777 888888888888765
No 390
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=30.82 E-value=32 Score=27.37 Aligned_cols=46 Identities=17% Similarity=0.398 Sum_probs=36.4
Q ss_pred CcccccccccccccC-cEEcCCCCcccHhhHHHhccCCCCCCCCCcccc
Q 011050 200 TDDFDCTLCLKLLYE-PITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 247 (494)
Q Consensus 200 ~~~~~C~iC~~~~~~-Pv~~~cgh~fc~~Cl~~~~~~~~~CP~Cr~~~~ 247 (494)
...|.|..|...+.. +....-|..||..|..... +..|..|+.++.
T Consensus 28 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~--~~~C~~C~~~I~ 74 (126)
T 2xqn_T 28 LKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNH--AVVCQGCHNAID 74 (126)
T ss_dssp GGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHS--CCBCTTTCSBCC
T ss_pred CCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCc--CccCcccCCcCC
Confidence 356899999988876 4456889999999987653 568999999874
No 391
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=30.29 E-value=32 Score=29.46 Aligned_cols=9 Identities=44% Similarity=1.139 Sum_probs=7.2
Q ss_pred CCCCCCCcc
Q 011050 237 NKCPLCRAV 245 (494)
Q Consensus 237 ~~CP~Cr~~ 245 (494)
..||.|..+
T Consensus 154 ~~CP~Cg~~ 162 (170)
T 3pwf_A 154 EYCPVCGAP 162 (170)
T ss_dssp SBCTTTCCB
T ss_pred CCCCCCCCC
Confidence 389999865
No 392
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=29.90 E-value=26 Score=25.25 Aligned_cols=30 Identities=27% Similarity=0.514 Sum_probs=21.3
Q ss_pred cccccccccccccCcE----EcCCCCcccHhhHH
Q 011050 201 DDFDCTLCLKLLYEPI----TTPCGHSFCRSCLF 230 (494)
Q Consensus 201 ~~~~C~iC~~~~~~Pv----~~~cgh~fc~~Cl~ 230 (494)
++-.|..|...|.--. --.||+.||..|..
T Consensus 10 ~~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 10 DSDACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred cCCcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 3457999988765321 14799999999964
No 393
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=29.81 E-value=1.5e+02 Score=25.44 Aligned_cols=82 Identities=21% Similarity=0.093 Sum_probs=55.0
Q ss_pred HHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHHHHHHHhh
Q 011050 53 KGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLN 132 (494)
Q Consensus 53 ~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~ 132 (494)
+-...++=.||+.|+-.-.=.+ |..+..-.-++..++..|+| ..++-.+.+
T Consensus 8 kI~Ks~kY~dYdt~~fLsa~L~---~~~~eY~lL~~I~LyyngEY-----------------------~R~Lf~L~~--- 58 (242)
T 3kae_A 8 KICKSIRYRDYETAIFLAACLL---PCKPEYRMLMSIVLYLNGEY-----------------------TRALFHLHK--- 58 (242)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC-------CTHHHHHHHHHHTTCH-----------------------HHHHHHHHT---
T ss_pred HHHHHhhcccccHHHHHHHHHc---cCChHHHhhhhhhhhhcchH-----------------------hHHHHHHHh---
Confidence 3445677788888865433222 33333334455667778888 777554332
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHccc
Q 011050 133 LQSNSMKSHLLKANALILLERYDMARDAILSGL 165 (494)
Q Consensus 133 l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al 165 (494)
-+-..+.|..+.||..+++|.+|+..++..+
T Consensus 59 --lNT~Ts~YYk~LCy~klKdYkkA~~~le~il 89 (242)
T 3kae_A 59 --LNTCTSKYYESLCYKKKKDYKKAIKSLESIL 89 (242)
T ss_dssp --CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred --cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2456788899999999999999999999988
No 394
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=29.80 E-value=32 Score=25.92 Aligned_cols=47 Identities=19% Similarity=0.458 Sum_probs=32.2
Q ss_pred CCcccccccccccccCcEEcCCCCcccHhhHHHhccC----CCCCCCCCcc
Q 011050 199 RTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDR----GNKCPLCRAV 245 (494)
Q Consensus 199 ~~~~~~C~iC~~~~~~Pv~~~cgh~fc~~Cl~~~~~~----~~~CP~Cr~~ 245 (494)
......|.+|..--.--..-.|-..|+..|+.+.+.. ...||.|...
T Consensus 22 d~n~~~C~vC~~~g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 22 DDSATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSCCSSSCSSSCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCCcCcCcCCCCCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 4455679999965321112389999999999765543 3579999864
No 395
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=28.68 E-value=21 Score=28.92 Aligned_cols=30 Identities=27% Similarity=0.634 Sum_probs=21.5
Q ss_pred ccccccccccccCcE----EcCCCCcccHhhHHH
Q 011050 202 DFDCTLCLKLLYEPI----TTPCGHSFCRSCLFQ 231 (494)
Q Consensus 202 ~~~C~iC~~~~~~Pv----~~~cgh~fc~~Cl~~ 231 (494)
...|..|...|.--. .-.||+.||..|...
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 347888988776321 247999999999644
No 396
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=28.53 E-value=19 Score=30.60 Aligned_cols=11 Identities=27% Similarity=0.673 Sum_probs=8.4
Q ss_pred CCCCCCCcccc
Q 011050 237 NKCPLCRAVLF 247 (494)
Q Consensus 237 ~~CP~Cr~~~~ 247 (494)
..||.|+.++.
T Consensus 149 ~~Cp~CG~~~~ 159 (165)
T 2lcq_A 149 GVCPDCGSKVK 159 (165)
T ss_dssp GBCTTTCCBEE
T ss_pred CcCCCCCCcce
Confidence 47999998763
No 397
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=27.61 E-value=35 Score=28.66 Aligned_cols=45 Identities=22% Similarity=0.580 Sum_probs=29.1
Q ss_pred Ccccccccccccc---cCc--EEcCCCCcccHhhHHHhc-cCCCCCCCCCc
Q 011050 200 TDDFDCTLCLKLL---YEP--ITTPCGHSFCRSCLFQSM-DRGNKCPLCRA 244 (494)
Q Consensus 200 ~~~~~C~iC~~~~---~~P--v~~~cgh~fc~~Cl~~~~-~~~~~CP~Cr~ 244 (494)
...-.|.+|...| .++ +...|.|.+|..|-.... .....|-+|+.
T Consensus 66 ~~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 66 LNETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEECCSSSSSCEEHHHHH
T ss_pred CCCccchhhcCccccccCCCCcCCCCCchhhcccccccCCCCcEeeHHHHH
Confidence 3578899999864 233 346899999999953211 12345777765
No 398
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=27.57 E-value=52 Score=26.71 Aligned_cols=46 Identities=20% Similarity=0.530 Sum_probs=31.5
Q ss_pred CCcccccccccccccCcEEcCCCCcccHhhHHHhc-----------cCCCCCCCCCc
Q 011050 199 RTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSM-----------DRGNKCPLCRA 244 (494)
Q Consensus 199 ~~~~~~C~iC~~~~~~Pv~~~cgh~fc~~Cl~~~~-----------~~~~~CP~Cr~ 244 (494)
...+..|.+|.+--.-...=.|-..||..||...+ .....|+.|+.
T Consensus 54 Dg~~~~C~vC~dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 54 DGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp TSCBSSCTTTCCCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCCcCeecCCCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 34455699998654322234899999999998642 23468999964
No 399
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=27.49 E-value=1.7e+02 Score=32.80 Aligned_cols=94 Identities=7% Similarity=-0.110 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHhcc----CCCCcccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHH
Q 011050 49 DLVQKGNRAFRESNFEEAISNYSRANNI----KPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 124 (494)
Q Consensus 49 ~~~~~g~~~~~~~~~~~Ai~~y~~al~~----~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 124 (494)
.+...-+.+.+.|+.++|...+.+.-+. -.-|...|+-+-..|.+.|++ ++|+
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~-----------------------~eA~ 185 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAF-----------------------KELV 185 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCH-----------------------HHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCH-----------------------HHHH
Confidence 3445566788999999999999775432 123567788888899999999 9999
Q ss_pred HHHHHHhhc--cccchHHHHHHHHHHHHHHHH-HHHHHHHHcccc
Q 011050 125 KDAEKLLNL--QSNSMKSHLLKANALILLERY-DMARDAILSGLQ 166 (494)
Q Consensus 125 ~~~~~al~l--~p~~~~a~~~~g~~~~~~~~~-~~A~~~~~~al~ 166 (494)
+.+++..+. .| +.-.|.-+-.+++..|+. ++|.+.|++...
T Consensus 186 ~Lf~eM~~~G~~P-DvvTYntLI~glcK~G~~~e~A~~Ll~EM~~ 229 (1134)
T 3spa_A 186 YVLFMVKDAGLTP-DLLSYAAALQCMGRQDQDAGTIERCLEQMSQ 229 (1134)
T ss_dssp HHHHHHHHTTCCC-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCC-cHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 999987654 46 445666666788888875 678777777654
No 400
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=27.18 E-value=18 Score=31.41 Aligned_cols=42 Identities=21% Similarity=0.306 Sum_probs=29.8
Q ss_pred ccccccccccCcE----Ec---CCCCcccHhhHHHhc------c-----CCCCCCCCCcc
Q 011050 204 DCTLCLKLLYEPI----TT---PCGHSFCRSCLFQSM------D-----RGNKCPLCRAV 245 (494)
Q Consensus 204 ~C~iC~~~~~~Pv----~~---~cgh~fc~~Cl~~~~------~-----~~~~CP~Cr~~ 245 (494)
.|++|...+.+.- ++ .|...|+..|..-.- . ....||.|+..
T Consensus 4 ~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~ 63 (183)
T 3lqh_A 4 FCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 63 (183)
T ss_dssp BCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCS
T ss_pred cCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCC
Confidence 4999998876542 33 688899999984321 0 15789999874
No 401
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=26.45 E-value=40 Score=25.54 Aligned_cols=28 Identities=14% Similarity=0.173 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHccc
Q 011050 138 MKSHLLKANALILLERYDMARDAILSGL 165 (494)
Q Consensus 138 ~~a~~~~g~~~~~~~~~~~A~~~~~~al 165 (494)
+-.+-++|..+...|+|++||+...+|.
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 3445688999999999999876555543
No 402
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=25.36 E-value=17 Score=22.12 Aligned_cols=13 Identities=38% Similarity=0.746 Sum_probs=7.6
Q ss_pred cccccccccccCc
Q 011050 203 FDCTLCLKLLYEP 215 (494)
Q Consensus 203 ~~C~iC~~~~~~P 215 (494)
|.||+|+..+.++
T Consensus 6 FiCP~C~~~l~s~ 18 (34)
T 3mjh_B 6 FICPQCMKSLGSA 18 (34)
T ss_dssp EECTTTCCEESSH
T ss_pred cCCcHHHHHcCCH
Confidence 5666666555544
No 403
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=25.21 E-value=39 Score=25.89 Aligned_cols=43 Identities=16% Similarity=0.272 Sum_probs=28.7
Q ss_pred cccccccccccccCcEEc---CCCCcccHhhHHHhcc---CCCCCCCCCc
Q 011050 201 DDFDCTLCLKLLYEPITT---PCGHSFCRSCLFQSMD---RGNKCPLCRA 244 (494)
Q Consensus 201 ~~~~C~iC~~~~~~Pv~~---~cgh~fc~~Cl~~~~~---~~~~CP~Cr~ 244 (494)
+...| +|......-.++ .|...|+..|+..... ..+.||.|+.
T Consensus 27 d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 34567 787655444333 7899999999865433 2357999974
No 404
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=25.12 E-value=26 Score=26.85 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHH
Q 011050 142 LLKANALILLERYDMARDAILSGLQVDPFSNPLQASL 178 (494)
Q Consensus 142 ~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~ 178 (494)
..+|..+...|+++.|+.+|-+|+.+.|.-.++...+
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~LL~i~ 60 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVL 60 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3568888899999999999999999988877654433
No 405
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=24.86 E-value=27 Score=30.40 Aligned_cols=43 Identities=21% Similarity=0.507 Sum_probs=28.9
Q ss_pred cccccccccccCcEEcCCCCcccHhhHHHhcc----CCCCCCCCCcc
Q 011050 203 FDCTLCLKLLYEPITTPCGHSFCRSCLFQSMD----RGNKCPLCRAV 245 (494)
Q Consensus 203 ~~C~iC~~~~~~Pv~~~cgh~fc~~Cl~~~~~----~~~~CP~Cr~~ 245 (494)
-.|.+|..--.--..-.|-..|+..|+...+. ....||.|+..
T Consensus 3 ~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 3 TICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCBTTTCCCSSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CcCccCCCCCceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 35778875433222347899999999976543 23579999865
No 406
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=24.60 E-value=52 Score=27.71 Aligned_cols=46 Identities=22% Similarity=0.491 Sum_probs=31.4
Q ss_pred CCCcccccccccccccCcEE---cCCCCcccHhhHHHhccCC----------CCCCCCCc
Q 011050 198 ERTDDFDCTLCLKLLYEPIT---TPCGHSFCRSCLFQSMDRG----------NKCPLCRA 244 (494)
Q Consensus 198 ~~~~~~~C~iC~~~~~~Pv~---~~cgh~fc~~Cl~~~~~~~----------~~CP~Cr~ 244 (494)
....+..|.+|-+--. -+. -+|...||..||...+..+ ..|-.|.-
T Consensus 75 eDG~~~yC~wC~~Gg~-l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 75 DDGYQSYCTICCGGRE-VLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp TTSSBSSCTTTSCCSE-EEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred CCCCcceeeEecCCCe-EEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 3445678888886432 111 2688999999998876542 46999964
No 407
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=24.32 E-value=1.5e+02 Score=24.89 Aligned_cols=88 Identities=11% Similarity=0.171 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHhccCCCC--cccccChhHHHHHHHhhhccCCCCCccccccCCCCCchhHHHHHH
Q 011050 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGD--PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (494)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (494)
...+..++.+|-+.||.+.|..+.. .+|.. ...-+-+|..|++...+. .+.-+
T Consensus 9 q~a~i~a~~afl~~dYs~VI~~L~~---~~~~~Lp~~~kY~LA~SYI~~e~Ls----------------------~eQKe 63 (161)
T 2ynq_A 9 QEAYIQSTELFLQNKYSDVITTLED---YAPEDMPYVIQYELASSYVMTESLT----------------------EEQRQ 63 (161)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHTT---SCGGGSCHHHHHHHHHHHHHTSSSC----------------------HHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhc---CChhhCChhHHHHHHHHHHHccCCC----------------------HHHHH
Confidence 4456788999999999998877643 44443 255566777777766661 23333
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHc
Q 011050 126 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILS 163 (494)
Q Consensus 126 ~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~ 163 (494)
..-..+.+..+. -+.+-.+|.+.|++++|++....
T Consensus 64 nIln~itlkSde---~yL~YWIyiGRg~~~eAlDiA~~ 98 (161)
T 2ynq_A 64 TVSNNITLKTDE---QYMLYWIYIGRSQSEEALELART 98 (161)
T ss_dssp HHHHTCCTTSCH---HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHhhCCccCCH---HHHHHHHHHcCCchHHHHHHHHh
Confidence 344444443322 22334578889999999887543
No 408
>3jq1_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 1.55A {Bacteroides vulgatus atcc 8482}
Probab=24.29 E-value=96 Score=31.16 Aligned_cols=86 Identities=12% Similarity=0.004 Sum_probs=54.9
Q ss_pred cccccChhHHHHHHHhhh-----ccCCCCCccccccCCCCCchhHHHHHHHHHHHhhcccc--------chHHHHHHHHH
Q 011050 81 PIVLGNRSSAYIRISQFL-----KHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSN--------SMKSHLLKANA 147 (494)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~--------~~~a~~~~g~~ 147 (494)
..++..||.+|+.+-+.- ...+..+.+-...-.-+..+..+..++|++.|+.+-|. ..-|+..+|.+
T Consensus 110 aEa~flRA~~yf~L~~~fG~VP~~~~~~~~~~~~~~~r~~~~evy~~I~~DL~~A~~~Lp~~~~~gr~tk~aA~allarv 189 (481)
T 3jq1_A 110 GECLFIRGFYLFQLAKEFKDAPLRLTASQSPSTFPLAKSSQADIWAQAKEDLKTAASLLPITNKIGKPTQGAAYAALGKI 189 (481)
T ss_dssp HHHHHHHHHHHHHHHHHHSSEECCCCCCSSCCCSCCCEECHHHHHHHHHHHHHHHHHHSCSSCSTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCeeeeccCCCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHH
Confidence 377788999999887631 11111111000111112233446778899999876553 33478889999
Q ss_pred HHHHHHHHHHHHHHHcccc
Q 011050 148 LILLERYDMARDAILSGLQ 166 (494)
Q Consensus 148 ~~~~~~~~~A~~~~~~al~ 166 (494)
|..+++|++|++..++++.
T Consensus 190 yL~~~~~~~A~~~a~~vi~ 208 (481)
T 3jq1_A 190 YVYEENWQEAINVLEPLTQ 208 (481)
T ss_dssp HHHTTCHHHHHHHHGGGGS
T ss_pred HHHHhHHHHHHHHHHHHHh
Confidence 9999999999999998864
No 409
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=24.15 E-value=9 Score=30.84 Aligned_cols=45 Identities=22% Similarity=0.487 Sum_probs=27.5
Q ss_pred cccccccccccccCcE----EcCCCCcccHhhHHHhccCCCCCCCCCcc
Q 011050 201 DDFDCTLCLKLLYEPI----TTPCGHSFCRSCLFQSMDRGNKCPLCRAV 245 (494)
Q Consensus 201 ~~~~C~iC~~~~~~Pv----~~~cgh~fc~~Cl~~~~~~~~~CP~Cr~~ 245 (494)
....|..|...|.--. .-.||..||..|..........|-.|-..
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~ 66 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRF 66 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHH
Confidence 3457888888775321 25899999999976544444557777543
No 410
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=24.10 E-value=19 Score=25.42 Aligned_cols=46 Identities=17% Similarity=0.395 Sum_probs=29.9
Q ss_pred CcccccccccccccCcEEcCCCCcccHhhHHHhcc----CCCCCCCCCcc
Q 011050 200 TDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMD----RGNKCPLCRAV 245 (494)
Q Consensus 200 ~~~~~C~iC~~~~~~Pv~~~cgh~fc~~Cl~~~~~----~~~~CP~Cr~~ 245 (494)
..+..|.+|...-.--..-.|...|+..|+...+. ....||.|...
T Consensus 6 ~~~~~C~vC~~~g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 6 KNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp SCCCSBSSSSCCSSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCccCCCCCCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 45667999986422111237889999999875443 23579998754
No 411
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.83 E-value=3.4e+02 Score=27.59 Aligned_cols=99 Identities=13% Similarity=-0.008 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHH-------HHHHhhhccCCCCCccccccCCCCCchh
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAY-------IRISQFLKHRPPSASEYRPLNGLDPTTH 119 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (494)
+.-++-.|..++-+++|.+|-.++..|+...|.+..+...+-.++ +-+|++
T Consensus 270 ~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~gfr~~a~K~lI~V~LLlG~i---------------------- 327 (523)
T 4b4t_S 270 ARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSLGFLQQSNKLHCCIQLLMGDI---------------------- 327 (523)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCSHHHHHHHHHHHHHHHHHTCC----------------------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhhhHHHHHHHHHHhHHhhcCCC----------------------
Confidence 455567899999999999999999999999998765544443332 224444
Q ss_pred HHHHHHHHHHHhhcccc---chHHHHHHHHHHH--HHHHHHHHHHHHHccccCCCCCchh
Q 011050 120 AELALKDAEKLLNLQSN---SMKSHLLKANALI--LLERYDMARDAILSGLQVDPFSNPL 174 (494)
Q Consensus 120 ~~~a~~~~~~al~l~p~---~~~a~~~~g~~~~--~~~~~~~A~~~~~~al~l~p~~~~~ 174 (494)
... ..+. .+. ....|+.++.++. .+..|..+++.+...+..+....-+
T Consensus 328 -P~r-~lf~-----q~~l~~~L~pY~~Lv~Avr~GdL~~F~~~L~~h~~~F~~Dgty~LI 380 (523)
T 4b4t_S 328 -PEL-SFFH-----QSNMQKSLLPYYHLTKAVKLGDLKKFTSTITKYKQLLLKDDTYQLC 380 (523)
T ss_dssp -CCH-HHHT-----TTSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCTHHH
T ss_pred -CCh-HHhh-----chhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhcceeccCChhHHH
Confidence 110 0000 111 1234677777763 3566777777777777766555443
No 412
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=23.82 E-value=33 Score=25.28 Aligned_cols=30 Identities=30% Similarity=0.671 Sum_probs=21.5
Q ss_pred ccccccccccccCcE----EcCCCCcccHhhHHH
Q 011050 202 DFDCTLCLKLLYEPI----TTPCGHSFCRSCLFQ 231 (494)
Q Consensus 202 ~~~C~iC~~~~~~Pv----~~~cgh~fc~~Cl~~ 231 (494)
...|..|...|.--. .-.||+.||..|...
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 346888888776321 247999999999754
No 413
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=23.45 E-value=64 Score=27.19 Aligned_cols=46 Identities=22% Similarity=0.512 Sum_probs=35.7
Q ss_pred CcccccccccccccCcEEcCCCCcccHhhHHHhccCCCCCCCCCcccc
Q 011050 200 TDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 247 (494)
Q Consensus 200 ~~~~~C~iC~~~~~~Pv~~~cgh~fc~~Cl~~~~~~~~~CP~Cr~~~~ 247 (494)
...|.|..|...|..-....-|..||..|....+ +..|..|...+.
T Consensus 31 ~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f--~~~C~~C~~~I~ 76 (169)
T 2rgt_A 31 SKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRF--GTKCAACQLGIP 76 (169)
T ss_dssp TTTSBCTTTCCBCCSCCEESSSCEECHHHHHHHH--SCBCTTTCCBCC
T ss_pred cccCccCCCCCcCCCCCcccCCeeeecccccccc--cccccccccccC
Confidence 3678999999888765445789999999987654 458999988763
No 414
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=23.44 E-value=80 Score=26.15 Aligned_cols=37 Identities=16% Similarity=0.268 Sum_probs=31.7
Q ss_pred chhhHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcc
Q 011050 40 PWDRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNI 76 (494)
Q Consensus 40 ~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~ 76 (494)
.....+.+..++..|..+...||++.|-..|-++..+
T Consensus 33 l~~ylrta~~llr~A~~y~~egd~e~AYily~R~~~L 69 (146)
T 2xze_A 33 PRRYFRSGVEIIRMASIYSEEGNIEHAFILYNKYITL 69 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3456788899999999999999999999999886443
No 415
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=23.43 E-value=78 Score=33.40 Aligned_cols=46 Identities=11% Similarity=0.024 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHccccCCCCCchhHHHHHHHHhhhh
Q 011050 141 HLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTA 186 (494)
Q Consensus 141 ~~~~g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~ 186 (494)
....|...+..|+|.-|....+.++..+|+|.+++..+...-+.+.
T Consensus 452 ~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~ 497 (658)
T 2cfu_A 452 LLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLG 497 (658)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 3344444444445555555555554445555544444444444433
No 416
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=22.83 E-value=34 Score=25.38 Aligned_cols=31 Identities=23% Similarity=0.548 Sum_probs=21.9
Q ss_pred cccccccccccccCcE----EcCCCCcccHhhHHH
Q 011050 201 DDFDCTLCLKLLYEPI----TTPCGHSFCRSCLFQ 231 (494)
Q Consensus 201 ~~~~C~iC~~~~~~Pv----~~~cgh~fc~~Cl~~ 231 (494)
+...|..|...|.--. .-.||+.||..|...
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 3457888888765331 247999999999654
No 417
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=22.53 E-value=55 Score=28.02 Aligned_cols=45 Identities=22% Similarity=0.513 Sum_probs=30.5
Q ss_pred cccccccccccccCcEEcCCCCcccHhhHHHhccCCCCCCCCCcccc
Q 011050 201 DDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 247 (494)
Q Consensus 201 ~~~~C~iC~~~~~~Pv~~~cgh~fc~~Cl~~~~~~~~~CP~Cr~~~~ 247 (494)
..|.|..|...|.......-|..||..|....+ +..|..|+..+.
T Consensus 86 ~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f--~~kC~~C~~~I~ 130 (182)
T 2jtn_A 86 KCLKCSDCHVPLAERCFSRGESVYCKDDFFKRF--GTKCAACQLGIP 130 (182)
T ss_dssp STTSCTTTCCCCSSCCEEETTEEECHHHHHHTT--SCCCTTTCCCCC
T ss_pred ccCccCCCCCccCCCceeECCEeeecCcccccc--ccccccCCCccC
Confidence 557777777766654334567788888876543 457888887663
No 418
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=22.51 E-value=1.9e+02 Score=25.19 Aligned_cols=9 Identities=44% Similarity=1.180 Sum_probs=7.4
Q ss_pred CCCCCCCcc
Q 011050 237 NKCPLCRAV 245 (494)
Q Consensus 237 ~~CP~Cr~~ 245 (494)
..||.|..+
T Consensus 187 ~~CP~C~~~ 195 (202)
T 1yuz_A 187 EKCPICFRP 195 (202)
T ss_dssp SBCTTTCCB
T ss_pred CCCCCCCCC
Confidence 589999875
No 419
>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}
Probab=22.12 E-value=19 Score=33.10 Aligned_cols=34 Identities=15% Similarity=0.253 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcc
Q 011050 43 RYTHVFDLVQKGNRAFRESNFEEAISNYSRANNI 76 (494)
Q Consensus 43 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~ 76 (494)
....|..+..+|..+=+.|+|++|+.+|.+|+++
T Consensus 19 ~~~~Ai~lv~~AVe~D~~g~y~eAl~lY~eaIe~ 52 (257)
T 2ymb_A 19 QSTAAATVLKRAVELDSESRYPQALVCYQEGIDL 52 (257)
T ss_dssp ----------------------------------
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455778899999999999999999999999984
No 420
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.97 E-value=16 Score=24.83 Aligned_cols=44 Identities=20% Similarity=0.438 Sum_probs=27.9
Q ss_pred CcccccccccccccCcEEcCCCCcccHhhHHHhccC----CCCCCCCC
Q 011050 200 TDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDR----GNKCPLCR 243 (494)
Q Consensus 200 ~~~~~C~iC~~~~~~Pv~~~cgh~fc~~Cl~~~~~~----~~~CP~Cr 243 (494)
..+..|.+|...-.--..-.|...|+..|+...+.. ...||.|.
T Consensus 7 ~~~~~C~vC~~~g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~ 54 (56)
T 2yql_A 7 GHEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 54 (56)
T ss_dssp SSCCSCSSSCCSSCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred CCCCCCccCCCCCeEEEcCCCCcceECccCCCCcCCCCCCceEChhhh
Confidence 345678888864211112379999999998754432 34688774
No 421
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=27.45 E-value=19 Score=38.19 Aligned_cols=51 Identities=8% Similarity=0.028 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhccCCCCcccccChhHHHHHHHhh
Q 011050 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQF 97 (494)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~ 97 (494)
+.....+|..++.+|+|+-|....+.++..+|++..+..-+|.+|-++|.-
T Consensus 461 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~ 511 (668)
T 2yhe_A 461 ADAVLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGYQ 511 (668)
Confidence 456778999999999999999999999999999999999999998888865
No 422
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=21.43 E-value=1.1e+02 Score=23.73 Aligned_cols=31 Identities=16% Similarity=0.090 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHhc
Q 011050 45 THVFDLVQKGNRAFRESNFEEAISNYSRANN 75 (494)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~ 75 (494)
.+++...-.|....+.|+|++|-....+|-+
T Consensus 18 G~ArS~~~eAl~~Ak~g~fe~A~~~l~eA~~ 48 (105)
T 2e2a_A 18 GDARSKLLEALKAAENGDFAKADSLVVEAGS 48 (105)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3567788889999999999999888887754
No 423
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=21.20 E-value=29 Score=26.05 Aligned_cols=48 Identities=17% Similarity=0.267 Sum_probs=33.2
Q ss_pred CCccccccccccccc-C--cEEc--CCCCcccHhhHHHhcc--CCCCCCCCCccc
Q 011050 199 RTDDFDCTLCLKLLY-E--PITT--PCGHSFCRSCLFQSMD--RGNKCPLCRAVL 246 (494)
Q Consensus 199 ~~~~~~C~iC~~~~~-~--Pv~~--~cgh~fc~~Cl~~~~~--~~~~CP~Cr~~~ 246 (494)
...+..|.+|...-. + .+.+ .|.-.|+..|+..... ....||.|....
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 446678999997541 1 2332 8999999999976433 346799997653
No 424
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=21.19 E-value=52 Score=24.82 Aligned_cols=45 Identities=22% Similarity=0.518 Sum_probs=34.6
Q ss_pred cccccccccccccCc-EEcCCCCcccHhhHHHhccCCCCCCCCCcccc
Q 011050 201 DDFDCTLCLKLLYEP-ITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 247 (494)
Q Consensus 201 ~~~~C~iC~~~~~~P-v~~~cgh~fc~~Cl~~~~~~~~~CP~Cr~~~~ 247 (494)
.-|.|..|...|... ....-|..||..|.... .+..|..|..++.
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~--~~~~C~~C~~~I~ 77 (101)
T 2cup_A 32 TCFRCAKCLHPLANETFVAKDNKILCNKCTTRE--DSPKCKGCFKAIV 77 (101)
T ss_dssp TTCCCSSSCCCTTSSCCEEETTEEECHHHHTTC--CCCBCSSSCCBCC
T ss_pred cCCcccccCCCCCcCeeECcCCEEEChhHhhhh--cCCccccCCCccc
Confidence 568899999887654 44578999999998654 3568999998774
No 425
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=21.07 E-value=19 Score=26.94 Aligned_cols=28 Identities=29% Similarity=0.547 Sum_probs=17.9
Q ss_pred ccccccccc-----CcEEc-CCCCcccHhhHHHh
Q 011050 205 CTLCLKLLY-----EPITT-PCGHSFCRSCLFQS 232 (494)
Q Consensus 205 C~iC~~~~~-----~Pv~~-~cgh~fc~~Cl~~~ 232 (494)
||-|...+. .++.= .||+.||..|-..|
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred CcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 776665432 12343 49999999987655
No 426
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=21.00 E-value=1.2e+02 Score=23.54 Aligned_cols=31 Identities=10% Similarity=0.125 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHhc
Q 011050 45 THVFDLVQKGNRAFRESNFEEAISNYSRANN 75 (494)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~ 75 (494)
.+++.+.-.|....+.|+|++|-....+|-+
T Consensus 16 G~Ars~~~eAl~~Ak~g~fe~A~~~l~eA~~ 46 (103)
T 1wcr_A 16 GQARSLAYAALKQAKQGDFAAAKAMMDQSRM 46 (103)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3577788889999999999999888877754
No 427
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=20.98 E-value=1.2e+02 Score=30.39 Aligned_cols=86 Identities=15% Similarity=0.125 Sum_probs=53.6
Q ss_pred ccccChhHHHHHHHhhhc-----cCCCCCcccc---------ccCCCCCchhHHHHHHHHHHHhhccc------------
Q 011050 82 IVLGNRSSAYIRISQFLK-----HRPPSASEYR---------PLNGLDPTTHAELALKDAEKLLNLQS------------ 135 (494)
Q Consensus 82 ~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~---------~~~~~~~~~~~~~a~~~~~~al~l~p------------ 135 (494)
.++..||.+|+.+-+.-- ....-+..+. ..-.-+..+..+..+.|++.|+.+-|
T Consensus 108 EA~flRA~~yf~L~~~fG~~Y~~~~~~~~VPl~~~~~~~~~~~~~r~t~~evy~~I~~DL~~A~~~L~~~~~~~~~~~gr 187 (460)
T 3snx_A 108 QALALRAFCYLHLVQHYQFTYLKDKDAPCVPIYTEPTTSGTKPKGKSTVAQVYQQIFDDLNLAQDYLTNYVRKGDGQKFK 187 (460)
T ss_dssp HHHHHHHHHHHHHHHHSSCCTTTCTTSBCCCCCCSCCCTTCCCCCCCBHHHHHHHHHHHHHHHHHHTTTCCCCSGGGTTS
T ss_pred HHHHHHHHHHHHHHHHhCcccccCCCCCCceEEeccCCccccCCCCCCHHHHHHHHHHHHHHHHHhcccccCCccccCcc
Confidence 677889999998876421 0000011110 00111112233667888888876433
Q ss_pred -cchHHHHHHHHHHHHHHHHHHHHHHHHccccC
Q 011050 136 -NSMKSHLLKANALILLERYDMARDAILSGLQV 167 (494)
Q Consensus 136 -~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 167 (494)
+..-|+-.+|.+|..+++|++|.+..++++.-
T Consensus 188 ~tk~aA~aLlARvyL~~~~~~~A~~~a~~vi~~ 220 (460)
T 3snx_A 188 PNTDVVNGLMARAYLLTGQWGEAAKAAEAARKG 220 (460)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred cCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 23347888999999999999999999999864
No 428
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=20.89 E-value=1.6e+02 Score=32.42 Aligned_cols=40 Identities=13% Similarity=-0.007 Sum_probs=34.0
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHccc
Q 011050 126 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGL 165 (494)
Q Consensus 126 ~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al 165 (494)
.++..+..-|.++-.-|.+|.+|...|++++|...|++|-
T Consensus 828 ~a~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 828 ACMQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3455667777777788999999999999999999999885
No 429
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=20.85 E-value=47 Score=25.92 Aligned_cols=43 Identities=26% Similarity=0.598 Sum_probs=29.3
Q ss_pred cccccccccccccC-c-EE-cCCCCcccHhhHHHhcc----CCCCCCCCC
Q 011050 201 DDFDCTLCLKLLYE-P-IT-TPCGHSFCRSCLFQSMD----RGNKCPLCR 243 (494)
Q Consensus 201 ~~~~C~iC~~~~~~-P-v~-~~cgh~fc~~Cl~~~~~----~~~~CP~Cr 243 (494)
.+..|.+|...-.. . +. -.|+..|+..|+..... ....||.|+
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 45678999865432 2 22 58999999999976554 235677764
No 430
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=20.61 E-value=92 Score=22.18 Aligned_cols=45 Identities=22% Similarity=0.503 Sum_probs=28.4
Q ss_pred CcccccccccccccCcEEc--C--CC-CcccHhhHHHhcc--CCCCCCCCCcc
Q 011050 200 TDDFDCTLCLKLLYEPITT--P--CG-HSFCRSCLFQSMD--RGNKCPLCRAV 245 (494)
Q Consensus 200 ~~~~~C~iC~~~~~~Pv~~--~--cg-h~fc~~Cl~~~~~--~~~~CP~Cr~~ 245 (494)
.....| +|........+. . |. ..|+..|+.-... ....||.|+..
T Consensus 14 ~~~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvgl~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 14 NEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp TSCCCS-TTCCCSCSSEECCSCSSCSCCCEETTTTTCSSCCSSCCCCTTTSSC
T ss_pred CCCCEE-ECCCCCCCCEeEeeCCCCCCccEecccCCcCcCCCCCEECCCCCcc
Confidence 345567 798764443222 3 65 5899999863322 23579999875
No 431
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=20.53 E-value=22 Score=24.43 Aligned_cols=45 Identities=20% Similarity=0.423 Sum_probs=28.4
Q ss_pred cccccccccccccCcEEcCCCCcccHhhHHHhccC----CCCCCCCCcc
Q 011050 201 DDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDR----GNKCPLCRAV 245 (494)
Q Consensus 201 ~~~~C~iC~~~~~~Pv~~~cgh~fc~~Cl~~~~~~----~~~CP~Cr~~ 245 (494)
.+..|.+|...-.--..-.|...|+..|+...+.. ...||.|...
T Consensus 4 ~~~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 4 HEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQ 52 (60)
T ss_dssp CCSSCTTTCCCSSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHH
T ss_pred CCCCCcCCCCCCcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccCh
Confidence 35568888864211112379999999998754432 3468888654
Done!