BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 011051
         (494 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|B2V3Z2|GPDA_CLOBA Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Clostridium
           botulinum (strain Alaska E43 / Type E3) GN=gpsA PE=3
           SV=1
          Length = 330

 Score = 37.0 bits (84), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 41/96 (42%), Gaps = 13/96 (13%)

Query: 173 LSASAHMWASTHNVTLKEKMTAVVS-----ALSECQNKMGSGYLSAFPSEQFDRFEALKP 227
           LS  +H       V LK   T VVS     A SE QN   + +   + +E     E    
Sbjct: 131 LSGPSH----AEEVVLKLPTTLVVSSENMNAASEAQNLFMTSFFRVYTNEDLVGVE---- 182

Query: 228 VWAPYYTIHKILAGLLDQYTFADNTQALKMTKWMVE 263
           V      I  + AG+LD   + DNT+A  MT+ M E
Sbjct: 183 VGGAVKNIIALAAGILDGLGYGDNTKAALMTRGMKE 218


>sp|P32812|YGL1_GEOSE Uncharacterized protein in gldA 5'region (Fragment) OS=Geobacillus
           stearothermophilus PE=4 SV=1
          Length = 97

 Score = 33.1 bits (74), Expect = 5.0,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 5/58 (8%)

Query: 247 TFADNTQALKMTKWMVEYFYNRVQNVITKYSVE-----RHWNSLNEETGGMNDVLYRL 299
           TFA+  + LK   W+ +  ++RV N+I    +E     + +   N+E  G+++ L RL
Sbjct: 22  TFAEYLEILKEKPWIAQSAHSRVYNMIKDAGIEEINGRKRYKFFNQEIFGLDEALERL 79


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.134    0.427 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 196,109,724
Number of Sequences: 539616
Number of extensions: 8339278
Number of successful extensions: 16156
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 16155
Number of HSP's gapped (non-prelim): 3
length of query: 494
length of database: 191,569,459
effective HSP length: 122
effective length of query: 372
effective length of database: 125,736,307
effective search space: 46773906204
effective search space used: 46773906204
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)