Query 011051
Match_columns 494
No_of_seqs 188 out of 704
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 07:33:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011051.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011051hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3533 Uncharacterized protei 100.0 5.2E-88 1.1E-92 698.4 23.2 362 102-493 9-376 (589)
2 PF07944 DUF1680: Putative gly 100.0 2.4E-86 5.2E-91 718.4 30.4 371 109-493 1-389 (520)
3 cd00249 AGE AGE domain; N-acyl 99.2 8.3E-09 1.8E-13 107.4 24.2 298 168-479 54-375 (384)
4 PF07944 DUF1680: Putative gly 98.9 2.4E-08 5.1E-13 109.4 17.1 238 168-429 126-402 (520)
5 COG3533 Uncharacterized protei 98.9 5.2E-09 1.1E-13 110.9 8.0 224 168-429 132-389 (589)
6 cd00249 AGE AGE domain; N-acyl 98.7 8.5E-07 1.8E-11 92.4 18.0 219 231-455 51-290 (384)
7 PF03663 Glyco_hydro_76: Glyco 98.3 1.2E-05 2.6E-10 84.7 16.1 187 169-372 38-256 (370)
8 PF03663 Glyco_hydro_76: Glyco 98.3 4.5E-06 9.7E-11 87.9 12.5 187 232-434 35-251 (370)
9 COG1331 Highly conserved prote 98.2 9.3E-05 2E-09 82.1 19.3 258 170-442 276-575 (667)
10 cd04791 LanC_SerThrkinase Lant 98.0 0.00043 9.4E-09 70.3 17.6 178 238-442 88-278 (321)
11 cd04791 LanC_SerThrkinase Lant 97.9 0.00034 7.3E-09 71.1 15.0 185 172-372 88-276 (321)
12 PF07470 Glyco_hydro_88: Glyco 97.8 0.0023 5E-08 66.1 20.7 242 169-446 27-293 (336)
13 PF07221 GlcNAc_2-epim: N-acyl 97.5 0.0017 3.7E-08 67.2 14.0 191 170-373 84-311 (346)
14 PF07221 GlcNAc_2-epim: N-acyl 97.4 0.0029 6.2E-08 65.6 13.8 231 169-455 23-263 (346)
15 cd04434 LanC_like LanC-like pr 97.0 0.053 1.1E-06 54.8 18.7 224 174-439 57-300 (343)
16 cd04792 LanM-like LanM-like pr 97.0 0.036 7.9E-07 64.2 19.2 215 176-435 550-778 (825)
17 PF06662 C5-epim_C: D-glucuron 97.0 0.0058 1.3E-07 58.8 10.3 131 294-431 37-186 (189)
18 COG4225 Predicted unsaturated 96.8 0.082 1.8E-06 54.9 17.6 236 169-443 38-306 (357)
19 COG1331 Highly conserved prote 96.8 0.018 3.9E-07 64.5 13.4 136 170-317 414-565 (667)
20 cd04434 LanC_like LanC-like pr 96.7 0.25 5.4E-06 49.9 20.3 228 176-438 11-253 (343)
21 cd04792 LanM-like LanM-like pr 96.6 0.14 3.1E-06 59.3 19.8 225 170-436 490-734 (825)
22 PF07470 Glyco_hydro_88: Glyco 96.6 0.025 5.4E-07 58.5 12.3 190 232-443 24-230 (336)
23 PTZ00470 glycoside hydrolase f 96.6 0.028 6.1E-07 62.0 13.1 126 170-316 112-251 (522)
24 COG4225 Predicted unsaturated 96.4 0.01 2.2E-07 61.4 7.8 124 233-370 36-168 (357)
25 cd04794 euk_LANCL eukaryotic L 96.2 0.15 3.3E-06 52.9 15.4 190 169-372 103-305 (343)
26 COG4403 LcnDR2 Lantibiotic mod 96.0 0.043 9.3E-07 62.8 10.9 119 170-315 699-821 (963)
27 PF01532 Glyco_hydro_47: Glyco 95.9 0.055 1.2E-06 58.7 11.2 202 237-443 81-324 (452)
28 PF06662 C5-epim_C: D-glucuron 95.2 0.13 2.8E-06 49.6 9.4 145 155-316 24-188 (189)
29 cd04793 LanC LanC is the cycla 95.0 1.2 2.7E-05 46.7 17.0 185 184-372 120-328 (382)
30 cd04794 euk_LANCL eukaryotic L 94.9 0.26 5.6E-06 51.2 11.5 126 176-318 174-301 (343)
31 PF01532 Glyco_hydro_47: Glyco 94.8 0.08 1.7E-06 57.5 7.8 267 168-442 78-392 (452)
32 PTZ00470 glycoside hydrolase f 94.8 1.4 3E-05 48.9 17.4 261 168-440 156-456 (522)
33 KOG2787 Lanthionine synthetase 94.1 0.27 5.9E-06 50.8 9.1 126 170-317 221-356 (403)
34 COG2942 N-acyl-D-glucosamine 2 93.5 3.1 6.7E-05 44.3 16.0 194 173-380 122-347 (388)
35 COG2942 N-acyl-D-glucosamine 2 93.5 0.61 1.3E-05 49.5 10.7 142 168-317 175-333 (388)
36 PF00759 Glyco_hydro_9: Glycos 93.0 0.34 7.3E-06 52.0 8.4 128 185-319 93-247 (444)
37 KOG2244 Highly conserved prote 91.9 0.85 1.8E-05 50.1 9.4 140 170-316 508-672 (786)
38 PF05147 LANC_like: Lanthionin 90.3 1 2.2E-05 46.0 8.0 185 177-372 116-309 (355)
39 cd04793 LanC LanC is the cycla 90.2 2.7 5.9E-05 44.1 11.3 146 167-317 172-323 (382)
40 COG4403 LcnDR2 Lantibiotic mod 89.7 6.3 0.00014 45.9 14.1 160 178-366 658-822 (963)
41 PLN02266 endoglucanase 89.0 6.8 0.00015 43.4 13.5 125 185-315 129-280 (510)
42 PLN02909 Endoglucanase 88.6 8.6 0.00019 42.4 13.9 121 184-314 118-264 (486)
43 KOG2244 Highly conserved prote 85.8 52 0.0011 36.9 17.4 212 131-370 417-676 (786)
44 PLN02175 endoglucanase 85.8 22 0.00047 39.3 14.9 126 187-315 109-259 (484)
45 TIGR02474 pec_lyase pectate ly 85.3 19 0.00041 37.1 13.4 90 168-268 45-149 (290)
46 PLN00119 endoglucanase 84.3 13 0.00028 41.1 12.4 126 185-315 116-265 (489)
47 PF13243 Prenyltrans_1: Prenyl 83.8 1.2 2.6E-05 37.9 3.5 92 153-268 14-105 (109)
48 PF05147 LANC_like: Lanthionin 83.4 2.3 5E-05 43.4 6.0 133 171-317 171-304 (355)
49 PLN02340 endoglucanase 83.1 13 0.00028 42.1 12.1 124 185-315 115-264 (614)
50 PLN02345 endoglucanase 80.3 10 0.00022 41.7 9.7 122 185-313 81-228 (469)
51 TIGR02474 pec_lyase pectate ly 80.0 19 0.00041 37.1 11.0 126 295-433 52-212 (290)
52 PF00759 Glyco_hydro_9: Glycos 79.7 17 0.00036 39.1 11.2 189 169-378 156-371 (444)
53 PLN02613 endoglucanase 79.4 23 0.0005 39.2 12.2 121 184-315 110-257 (498)
54 PLN02420 endoglucanase 79.1 22 0.00047 39.7 11.9 126 184-315 125-276 (525)
55 PLN03009 cellulase 78.4 18 0.0004 40.0 11.1 128 184-314 111-264 (495)
56 PF05592 Bac_rhamnosid: Bacter 76.4 27 0.00058 38.2 11.8 123 181-316 163-311 (509)
57 PLN02308 endoglucanase 75.8 24 0.00051 39.1 11.0 123 186-314 112-261 (492)
58 PLN02171 endoglucanase 70.4 53 0.0011 37.5 12.4 123 186-315 116-265 (629)
59 KOG2787 Lanthionine synthetase 70.0 18 0.0004 37.8 7.8 114 252-372 241-361 (403)
60 cd02889 SQCY Squalene cyclase 66.7 47 0.001 34.0 10.3 145 118-268 44-203 (348)
61 cd02892 SQCY_1 Squalene cyclas 65.0 66 0.0014 36.6 11.9 98 169-268 377-488 (634)
62 PF09492 Pec_lyase: Pectic aci 64.7 34 0.00074 35.3 8.6 91 168-268 40-144 (289)
63 PF09492 Pec_lyase: Pectic aci 64.0 55 0.0012 33.8 9.9 142 240-433 46-207 (289)
64 KOG2204 Mannosyl-oligosacchari 63.4 72 0.0016 35.8 11.1 186 179-382 342-571 (625)
65 PF06917 Pectate_lyase_2: Peri 61.7 17 0.00036 40.1 6.0 86 294-380 391-479 (557)
66 PF06917 Pectate_lyase_2: Peri 61.6 30 0.00066 38.2 7.9 87 169-268 386-472 (557)
67 KOG2430 Glycosyl hydrolase, fa 57.3 1.1E+02 0.0023 32.5 10.7 183 233-435 185-390 (587)
68 KOG2431 1, 2-alpha-mannosidase 56.9 16 0.00035 39.4 4.7 80 237-317 179-271 (546)
69 KOG2430 Glycosyl hydrolase, fa 56.8 58 0.0013 34.4 8.7 95 169-269 187-284 (587)
70 PF02011 Glyco_hydro_48: Glyco 55.2 27 0.00058 39.0 6.3 94 172-269 412-524 (619)
71 PF13243 Prenyltrans_1: Prenyl 54.6 3 6.5E-05 35.3 -0.8 59 192-269 1-59 (109)
72 PF08139 LPAM_1: Prokaryotic m 53.6 7 0.00015 25.5 1.0 18 1-18 7-24 (25)
73 TIGR01787 squalene_cyclas squa 53.6 95 0.0021 35.4 10.6 81 184-268 382-472 (621)
74 PF13249 Prenyltrans_2: Prenyl 53.2 53 0.0011 27.5 6.7 61 192-268 42-104 (113)
75 TIGR01507 hopene_cyclase squal 52.2 1.3E+02 0.0028 34.4 11.5 77 169-268 454-531 (635)
76 KOG2429 Glycosyl hydrolase, fa 49.8 1.3E+02 0.0027 33.9 10.2 158 138-317 228-401 (622)
77 TIGR01507 hopene_cyclase squal 48.6 1.2E+02 0.0026 34.7 10.4 109 153-268 364-483 (635)
78 PLN02909 Endoglucanase 48.2 2.6E+02 0.0057 31.0 12.6 26 353-378 368-397 (486)
79 PF05426 Alginate_lyase: Algin 48.0 61 0.0013 32.1 7.3 44 336-379 165-209 (272)
80 TIGR01577 oligosac_amyl oligos 47.0 1.8E+02 0.004 32.9 11.6 119 190-316 314-450 (616)
81 TIGR03463 osq_cycl 2,3-oxidosq 46.4 2.1E+02 0.0046 32.7 12.0 114 153-268 357-489 (634)
82 TIGR01535 glucan_glucosid gluc 39.9 4E+02 0.0086 30.7 12.8 87 172-268 296-385 (648)
83 PRK11443 lipoprotein; Provisio 37.9 21 0.00046 32.2 1.9 18 1-19 1-18 (124)
84 PRK10449 heat-inducible protei 37.1 22 0.00048 32.4 1.9 23 1-23 1-23 (140)
85 PF06291 Lambda_Bor: Bor prote 35.3 25 0.00054 30.4 1.8 26 1-26 1-26 (97)
86 PLN03012 Camelliol C synthase 34.5 5.5E+02 0.012 30.2 12.9 98 169-268 488-602 (759)
87 KOG2431 1, 2-alpha-mannosidase 31.2 1.1E+02 0.0023 33.4 6.0 114 339-455 177-292 (546)
88 COG1554 ATH1 Trehalose and mal 30.7 2.1E+02 0.0045 33.6 8.6 110 151-270 345-476 (772)
89 cd02894 GGTase-II Geranylgeran 28.5 2.6E+02 0.0056 28.3 8.3 27 186-214 96-122 (287)
90 KOG0602 Neutral trehalase [Car 28.2 1.3E+02 0.0028 34.2 6.3 104 154-270 406-517 (600)
91 PF13249 Prenyltrans_2: Prenyl 26.9 65 0.0014 27.0 3.1 40 169-211 72-111 (113)
92 PLN00119 endoglucanase 26.9 2.2E+02 0.0048 31.6 7.8 64 356-432 202-265 (489)
93 PLN03009 cellulase 26.6 9.2E+02 0.02 26.8 14.1 25 354-378 374-402 (495)
94 PLN02340 endoglucanase 26.4 1E+03 0.022 27.3 15.5 27 237-263 240-266 (614)
95 KOG2429 Glycosyl hydrolase, fa 24.7 2.4E+02 0.0052 31.8 7.4 197 237-434 124-401 (622)
96 PF12234 Rav1p_C: RAVE protein 24.6 2.7E+02 0.0059 32.0 8.1 96 245-363 412-518 (631)
97 PLN02993 lupeol synthase 24.5 8.1E+02 0.017 28.9 12.0 98 169-268 488-602 (763)
98 PLN02345 endoglucanase 22.6 3.2E+02 0.0068 30.2 8.0 61 356-430 167-228 (469)
99 PLN02266 endoglucanase 21.8 3.4E+02 0.0073 30.4 8.1 66 356-432 215-280 (510)
100 TIGR03463 osq_cycl 2,3-oxidosq 20.8 4.6E+02 0.01 30.0 9.2 82 169-268 453-537 (634)
No 1
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=5.2e-88 Score=698.43 Aligned_cols=362 Identities=26% Similarity=0.387 Sum_probs=333.5
Q ss_pred ccccCCCCeEeCCCCcchHHHHHHHHHHHhcCcchhhHHHHHHhCCCCCCCCCCCccCCCcCccccchhHHHHHHHHHHH
Q 011051 102 LKEVSLHDVKLDPSSLHWRAQQTNLEYLLMLDVDSLVWSFQKTAGSPTAGKAYEGWEDPTCELRGHFVGHYLSASAHMWA 181 (494)
Q Consensus 102 ~~p~~l~~V~l~~~~~~~~~~~~~~~~ll~~~~d~lL~nFr~~AGl~~~g~~~ggWe~~d~~lrGh~~G~~LsA~a~~~a 181 (494)
++|+++++|.+ .+.|..++++++.+++|+|+++|-.+++++.+.+.++||+.. .|+||++||||||+|++++
T Consensus 9 ~r~v~v~~~~~------~~~qg~~~d~v~~~~~d~Lldr~~ea~~l~~~d~~r~g~~~q--~f~dsdlgkwlea~A~~l~ 80 (589)
T COG3533 9 LRPVTVKDVIF------GQFQGKNRDVVVSLQADRLLDRCHEAAMLPAKDPFRGGWETQ--MFWDSDLGKWLEAAAYSLA 80 (589)
T ss_pred cccCCcCchhc------cccccccceeEEecCHHHHHhHhhhccCCCccCcccccceee--eeccccHHHHHHHHHHHHh
Confidence 66666666665 344566778899999999999999999999888889999954 5899999999999999999
Q ss_pred hcCChhHHHHHHHHHHHHHHHhhhCCCcccccC-----CchhHhhhhhcCCCCcccchHHHHHHHHHHHHHHcCChhHHH
Q 011051 182 STHNVTLKEKMTAVVSALSECQNKMGSGYLSAF-----PSEQFDRFEALKPVWAPYYTIHKILAGLLDQYTFADNTQALK 256 (494)
Q Consensus 182 ~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~~~-----p~~~~~~l~~~~~~W~p~Y~~hkl~~GLvd~y~~tG~~kaL~ 256 (494)
.++|++|++++|++|++++++|+ +|||||++ |+++|++++.. +++||.|||++|+||+|++||+.++|+
T Consensus 81 ~~~dp~Lekr~D~vi~~~a~~Qd--edGYl~~~~q~~~pe~Rw~nlr~~----HelY~aghLieg~va~~qaTGkr~lld 154 (589)
T COG3533 81 NKGDPELEKRIDEVVEELARAQD--EDGYLGGWFQADFPEERWGNLRPN----HELYCAGHLIEGGVAAHQATGKRRLLD 154 (589)
T ss_pred cCCCHHHHHHHHHHHHHHHHhhc--cCCcccceeeccCchhhhhccccc----hHHHHhHHHHhhhhHHHHhhCcchHHH
Confidence 99999999999999999999999 99999997 78899999754 589999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccccccchhhhhhhhcccccchHHHHHHHHHhcCChhHHHHHhhhcccccchhhhhcCCCCCCCcc
Q 011051 257 MTKWMVEYFYNRVQNVITKYSVERHWNSLNEETGGMNDVLYRLYTITQDPKHLLLAHLFDKPCFLGLLAVQADDISGFHA 336 (494)
Q Consensus 257 ia~r~aD~~~~~~~~~~~k~~~~~~~~~l~~e~GGm~eaL~~LY~iTGd~ryL~lA~~F~~~~~~~~la~~~d~l~~~HA 336 (494)
|++|+|||+...|++..+ +.+..++|++|+++|++||++|||+|||+||++|.+.+..+|++.+.+.+.++||
T Consensus 155 V~~rlADhi~tvfgp~~~-------q~~g~~gH~eielAl~~Ly~~Tg~~rYL~LA~~Fi~~rg~~P~~~rg~e~~~gHA 227 (589)
T COG3533 155 VVCRLADHIATVFGPEED-------QVPGYCGHPEIELALAELYRLTGDQRYLDLARRFIHQRGVEPLAQRGDELEGGHA 227 (589)
T ss_pred HHHHHHHhhhhhcCcccc-------ccccccCCCchhHHHHHHHHHhcChHHHHHHHHHHHHhccChhhcCchhhhhhhH
Confidence 999999999999998533 2345689999999999999999999999999999999999999988888899999
Q ss_pred cchHHHHHHHHHHHHHhCChhHHHHHHHHHHHHhhcCceecccCCC-CCCCCCCCcccccCCCCccccchhhHHHHHHHH
Q 011051 337 NTHIPVVIGSQMRYEVTGDPLYKVTGTFFMDIVNASHGYATGGTSA-GEFWSDPKRLASTLGTENEESCTTYNMLKVSRH 415 (494)
Q Consensus 337 nt~ip~~~G~a~~y~~TGD~~yl~a~~~~w~~v~~~~~y~TGG~g~-~E~f~~~~~L~~~l~~~~~ETCas~n~lkl~~~ 415 (494)
|++||+++|+|++|+++||+.++.++++||++|+++++|||||+|+ +|+|+++|+|||. +.|+|||+||||+||++|
T Consensus 228 vr~iyl~~G~A~l~~~~gDds~r~~~~~lW~~~t~k~~YitGG~g~~~E~F~~~ydlpn~--~~yAEtCas~~l~~~a~R 305 (589)
T COG3533 228 VRQIYLYIGAADLAEETGDDSLRQAAEFLWQNVTTRQSYITGGNGSSNEHFGPDYDLPNR--TAYAETCASYNLLKLARR 305 (589)
T ss_pred HHHHHHhhhHHHHHHHhCCHHHHHHHHHHHHHhhhhheEEecccCCccccCCccccCccc--chHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999975 6999999999996 689999999999999999
Q ss_pred HhccCCCCchHHHHHHHHhhhhhccCCCCCCCeEEEecCCCCCCccccccCCCCCCCCcccccccccccchhhhhhcc
Q 011051 416 LFRWTKEMVYADYYERALTNGVLSIQRGTEPGVMIYMLPLGRGDSKAKSYHGWGTRFSSFWCCYGTGLGFIRWIQLSL 493 (494)
Q Consensus 416 L~~~tgd~~YaD~~Er~LyN~iLa~~~~~d~g~~~Y~~pL~~g~~k~~~~~~~~~~~~sfwCC~GtG~E~~~~~~~~~ 493 (494)
||.+++|++|||+|||+|||++|++|++ |+|+|||+|||+.+.. | .+.++++||||.++|+|+++++.+++
T Consensus 306 ml~~~~d~~yaDvmErALYN~iL~g~sl-Dg~~ffY~nPle~~gr-----h-~r~~w~~c~CCppn~ar~~as~g~yi 376 (589)
T COG3533 306 MLGWGPDSQYADVMERALYNHILAGQSL-DGGMFFYFNPLESGGR-----H-SRQKWFSCWCCPPNGARSVASIGDYI 376 (589)
T ss_pred HhccCCCchHHHHHHHHHHhccccccCC-CCCeeEEecchhhCCC-----c-cccccccCCCCCCcHhhhhhhccceE
Confidence 9999999999999999999999999999 9999999999976653 2 26799999999999999999988764
No 2
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=100.00 E-value=2.4e-86 Score=718.41 Aligned_cols=371 Identities=38% Similarity=0.590 Sum_probs=341.5
Q ss_pred CeEeCCCCcchHHHHHHHHHHHhcCcchhhHHHHHHhCCCCCCCCCCCcc--CCCcCccccchhHHHHHHHHHHHhcCCh
Q 011051 109 DVKLDPSSLHWRAQQTNLEYLLMLDVDSLVWSFQKTAGSPTAGKAYEGWE--DPTCELRGHFVGHYLSASAHMWASTHNV 186 (494)
Q Consensus 109 ~V~l~~~~~~~~~~~~~~~~ll~~~~d~lL~nFr~~AGl~~~g~~~ggWe--~~d~~lrGh~~G~~LsA~a~~~a~t~D~ 186 (494)
+|+|+ ++||+++|+++++|++++++|+|+++||..||++.++.++|||+ +++..|+||++||||||+|++++.++|+
T Consensus 1 ~V~l~-~~~~~~~~~~~~~~~l~~~~d~ll~~~r~~agl~~~~~~~g~we~~~~~~~~~~~~~g~wl~a~a~~~~~~~D~ 79 (520)
T PF07944_consen 1 DVRLT-DGFWKRRQELNRAYLLPLDPDRLLYNFRSHAGLPNFAIAYGGWEGEFPGWWFRGHDVGKWLEAAAYAYAYTGDP 79 (520)
T ss_pred CeEEC-cHHHHHHHHHHHHHHHHhHHHHHhhhcCcccCCCCccccCCCCccCCCCCccCCCcHHHHHHHHHHHHHHCCCH
Confidence 69999 58999999999999999999999999999999999888999999 8889999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhhCCCcccccCCchhHhhhhhcCCCCcc----cchHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 011051 187 TLKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFEALKPVWAP----YYTIHKILAGLLDQYTFADNTQALKMTKWMV 262 (494)
Q Consensus 187 ~L~~k~d~~Vd~l~~~Q~~~~dGYL~~~p~~~~~~l~~~~~~W~p----~Y~~hkl~~GLvd~y~~tG~~kaL~ia~r~a 262 (494)
+|++|++++|+.|.+||+ +||||++|++.. ....+++|.| +||+|||++||+|+|++|||+++|++++|+|
T Consensus 80 ~l~~~~d~~V~~l~~~Q~--~dGYl~~~~~~~---~~~~~~~w~~~~he~Y~~~~ll~gl~~~y~~tG~~~~L~v~~k~a 154 (520)
T PF07944_consen 80 ELKAKADEIVDELAAAQQ--PDGYLGTYPEER---NFNPDDRWAPDMHELYCLGKLLEGLIDYYEATGNERALDVATKLA 154 (520)
T ss_pred HHHHHHHHHHHHHHHhcc--CCceeccccccc---ccccccCCCCCccceehHhHHHHHHHHHHHHHCcHHHHHHHHHHH
Confidence 999999999999999999 999999998754 1235578888 9999999999999999999999999999999
Q ss_pred HHHHHhhcccccccchhhhhhhhcccccchHHHHHHHHHhcCChhHHHHHhhhcccccchh--hhhcCCCCCCCcccchH
Q 011051 263 EYFYNRVQNVITKYSVERHWNSLNEETGGMNDVLYRLYTITQDPKHLLLAHLFDKPCFLGL--LAVQADDISGFHANTHI 340 (494)
Q Consensus 263 D~~~~~~~~~~~k~~~~~~~~~l~~e~GGm~eaL~~LY~iTGd~ryL~lA~~F~~~~~~~~--la~~~d~l~~~HAnt~i 340 (494)
||+.++... .++++.+.+..+|||||+++|++||++|||++||+||++|++..+++| +..++|.+++.|+|+++
T Consensus 155 d~~~~~~~~----~~~~~~~~~~~~~~~~i~~~l~~LY~~Tgd~~yL~lA~~f~~~~~~~~~~~~~~~d~~~~~~a~~~~ 230 (520)
T PF07944_consen 155 DWVYRRLSR----LGPEPGQKMGYPEHGGINEALVRLYEITGDERYLDLAEYFVDQRGFDPYDLAYGQDHLPGRHANTHI 230 (520)
T ss_pred HHHHHHhcc----CCHHHhhcccccccchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCCchhhcCccCCCcccccee
Confidence 999665443 223444455678999999999999999999999999999999999998 88999999999999888
Q ss_pred HHHH-------HHHHHHHHhCChhHHHHHHHHHHHHhhcCceecccCCCC---CCCCCCCcccccCCCCccccchhhHHH
Q 011051 341 PVVI-------GSQMRYEVTGDPLYKVTGTFFMDIVNASHGYATGGTSAG---EFWSDPKRLASTLGTENEESCTTYNML 410 (494)
Q Consensus 341 p~~~-------G~a~~y~~TGD~~yl~a~~~~w~~v~~~~~y~TGG~g~~---E~f~~~~~L~~~l~~~~~ETCas~n~l 410 (494)
|.++ |++++|++|||++|++|++++|++|+++|||+|||+|++ |+|++++++|+. .+++|||++||||
T Consensus 231 ~h~vr~~y~~~g~a~~y~~tgd~~~~~a~~~~w~~v~~~~~y~tGg~g~~~~~E~f~~~~~lp~~--~~~~EtCas~~~~ 308 (520)
T PF07944_consen 231 GHAVRAMYLYSGAADLYEETGDEEYLDAAENFWDNVVRHHMYATGGIGSDHEGEHFGPPYDLPNR--LAYAETCASVNMM 308 (520)
T ss_pred eEEEEhhhhhhHHHHHHHHhCCHHHHHHHHHHHHHHHhcCeeccCCCcCCCCCccCCCCCCCCcC--CCCccccHHHHHH
Confidence 8776 999999999999999999999999999999999999998 999999999986 4579999999999
Q ss_pred HHHHHHhccCCCCchHHHHHHHHhhhhhccCCCCCCCeEEEecCCCCCCccccccCCCCCCCCcccccccccccchhhhh
Q 011051 411 KVSRHLFRWTKEMVYADYYERALTNGVLSIQRGTEPGVMIYMLPLGRGDSKAKSYHGWGTRFSSFWCCYGTGLGFIRWIQ 490 (494)
Q Consensus 411 kl~~~L~~~tgd~~YaD~~Er~LyN~iLa~~~~~d~g~~~Y~~pL~~g~~k~~~~~~~~~~~~sfwCC~GtG~E~~~~~~ 490 (494)
+|+++||++|||++|+|+|||++||++||+|++ |+|+++|+|||+++..|... ..+++++++||||+||++|.++|++
T Consensus 309 ~~~~~L~~~tgd~~yaD~~Er~lyN~~la~~~~-d~~~~~Y~~pl~~~~~~~~~-~~~~~~~~~~~CC~~n~~r~~~~~~ 386 (520)
T PF07944_consen 309 KLARRLFRLTGDARYADYYERALYNALLAGQSP-DGGSFFYFNPLNSGPYKHRW-KNYRTPWFSFWCCPGNGARGWAKLP 386 (520)
T ss_pred HHHHHHHhcCCCchHHHHHHHHHhcccccccCC-CCCeeEEecCCccCcCcccc-ccccCCCCCCCCCcchHHHHHHHHh
Confidence 999999999999999999999999999999999 99999999999888766421 3578899999999999999999999
Q ss_pred hcc
Q 011051 491 LSL 493 (494)
Q Consensus 491 ~~~ 493 (494)
+++
T Consensus 387 ~~i 389 (520)
T PF07944_consen 387 DYI 389 (520)
T ss_pred hhh
Confidence 864
No 3
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=99.16 E-value=8.3e-09 Score=107.43 Aligned_cols=298 Identities=12% Similarity=0.042 Sum_probs=181.9
Q ss_pred chhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhCC-CcccccCCchhHhhhhhcCCCCcc-cchHHHHHHHHHHH
Q 011051 168 FVGHYLSASAHMWASTHNVTLKEKMTAVVSALSECQNKMG-SGYLSAFPSEQFDRFEALKPVWAP-YYTIHKILAGLLDQ 245 (494)
Q Consensus 168 ~~G~~LsA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~~-dGYL~~~p~~~~~~l~~~~~~W~p-~Y~~hkl~~GLvd~ 245 (494)
..+..|-+.|..+..++|++.++.++..++.|.+.-.... .||+..++.+ +.... . .+ .|....++.|+..+
T Consensus 54 ~~ar~i~~~a~a~~~~~~~~~l~~A~~~~~fl~~~~~d~~~Gg~~~~~~~~-g~~~~-~----~~~l~~~a~~l~ala~~ 127 (384)
T cd00249 54 LQARQVYCFAVAYLLGWRPEWLEAAEHGLEYLDRHGRDPDHGGWYFALDQD-GRPVD-A----TKDLYSHAFALLAAAQA 127 (384)
T ss_pred EecHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhCcCCCCCCEEEEEcCC-CCCcc-c----ccchHHHHHHHHHHHHH
Confidence 3588999999999999999999999999999987533112 4788776421 10000 0 13 78888999999999
Q ss_pred HHHcCChhHHHHHHHHHHHHHHhhcccccccchhhh---hhhhcc--cccchHHHHHHHHHhcCChhHHHHHhhhcc---
Q 011051 246 YTFADNTQALKMTKWMVEYFYNRVQNVITKYSVERH---WNSLNE--ETGGMNDVLYRLYTITQDPKHLLLAHLFDK--- 317 (494)
Q Consensus 246 y~~tG~~kaL~ia~r~aD~~~~~~~~~~~k~~~~~~---~~~l~~--e~GGm~eaL~~LY~iTGd~ryL~lA~~F~~--- 317 (494)
|++||+++.|+.+++.++++.+.|-+..+.. .... +..+.. .+.=+-+++.+||++|||++|++.|+...+
T Consensus 128 ~~at~d~~~l~~A~~~~~~l~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~h~~~all~l~~~tgd~~~~~~A~~l~~~~~ 206 (384)
T cd00249 128 AKVGGDPEARALAEETIDLLERRFWEDHPGA-FDEADPGTPPYRGSNPHMHLLEAMLAAYEATGEQKYLDRADEIADLIL 206 (384)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHhccCCCcc-cCCCCCCCCCCCCCChhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999873100100 0000 010000 111113689999999999999999976532
Q ss_pred cccchh----hhhc--CC--CCC---CCcccc--hHHHHHHHHHHHHHhCChhHHHHHHHHHHHHhhcCcee-cccCCCC
Q 011051 318 PCFLGL----LAVQ--AD--DIS---GFHANT--HIPVVIGSQMRYEVTGDPLYKVTGTFFMDIVNASHGYA-TGGTSAG 383 (494)
Q Consensus 318 ~~~~~~----la~~--~d--~l~---~~HAnt--~ip~~~G~a~~y~~TGD~~yl~a~~~~w~~v~~~~~y~-TGG~g~~ 383 (494)
..+.++ +.+. .+ .++ +...+- +.-.+..+.++++++||++|++.++.+|+.+.++-.=. +||+-
T Consensus 207 ~~~~~~~~G~~~e~~~~~~~~~~~~~~~~~~Pgh~~e~a~~ll~l~~~~~~~~~~~~a~~~~~~~~~~~~d~~~G~~~-- 284 (384)
T cd00249 207 DRFIDAESGVVREHFDEDWNPYNGDKGRHQEPGHQFEWAWLLLRIASRSGQAWLIEKARRLFDLALALGWDPERGGLY-- 284 (384)
T ss_pred HHhcCcccCeEEEEECCCCCCCcCcCCCcCCCchHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhCcCccCCCEE--
Confidence 122111 1000 00 010 111100 12344566788999999999999999999988644212 23321
Q ss_pred CCCCCCCcccccCCCCccccchhhHHHHHHHHHhccCCCCchHHHHHHHHhhhhhccCCCCCCCeEEEecCCCCCCcccc
Q 011051 384 EFWSDPKRLASTLGTENEESCTTYNMLKVSRHLFRWTKEMVYADYYERALTNGVLSIQRGTEPGVMIYMLPLGRGDSKAK 463 (494)
Q Consensus 384 E~f~~~~~L~~~l~~~~~ETCas~n~lkl~~~L~~~tgd~~YaD~~Er~LyN~iLa~~~~~d~g~~~Y~~pL~~g~~k~~ 463 (494)
+.+.++...+ .....-......+++..-.|.++|||.+|.+.++++.=-..--..++..|+-+.+.++- |.+...
T Consensus 285 ~~~~~~~~~~---~~~~~~~w~~~E~~~a~~~l~~~tgd~~~~~~~~~~~~~~~~~~~d~~~G~w~~~~~~~--g~~~~~ 359 (384)
T cd00249 285 YSFLDDGGLL---EDDDKRWWPQTEALKAALALAGITGDERYWQWYQRAWAYLWRHFIDPEYGLWFGYLDAD--GKVLLT 359 (384)
T ss_pred EeeECCCCCc---ccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCCCCcceeeECCC--CCCcCC
Confidence 1111111111 12233445567777788889999999999999988732222223344223434455443 333221
Q ss_pred ccCCCCCCCCcccccc
Q 011051 464 SYHGWGTRFSSFWCCY 479 (494)
Q Consensus 464 ~~~~~~~~~~sfwCC~ 479 (494)
....+++.++.+-||.
T Consensus 360 ~~~~~~~~yH~~~a~~ 375 (384)
T cd00249 360 PKGPAKTFYHVVRALY 375 (384)
T ss_pred CCCCCCCCccHHhHHH
Confidence 1145778888888874
No 4
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=98.93 E-value=2.4e-08 Score=109.40 Aligned_cols=238 Identities=16% Similarity=0.130 Sum_probs=141.6
Q ss_pred chhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhCCCcccccCCchhHhhhhhcCCCCcccchHHHHHHHHHHHHH
Q 011051 168 FVGHYLSASAHMWASTHNVTLKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFEALKPVWAPYYTIHKILAGLLDQYT 247 (494)
Q Consensus 168 ~~G~~LsA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~~~p~~~~~~l~~~~~~W~p~Y~~hkl~~GLvd~y~ 247 (494)
..||.|+|+...|..|+|+++.+.+.+++|.+.+.-. .+.++.+ ...|.+-+ +-+.++|+..|+
T Consensus 126 ~~~~ll~gl~~~y~~tG~~~~L~v~~k~ad~~~~~~~--------~~~~~~~------~~~~~~~~--~~i~~~l~~LY~ 189 (520)
T PF07944_consen 126 CLGKLLEGLIDYYEATGNERALDVATKLADWVYRRLS--------RLGPEPG------QKMGYPEH--GGINEALVRLYE 189 (520)
T ss_pred hHhHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHhc--------cCCHHHh------hccccccc--chHHHHHHHHHH
Confidence 4799999999999999999999999999999844333 1222111 12233322 136689999999
Q ss_pred HcCChhHHHHHHHHHHHHHHhhcccc---cccchhhhhhh---hcccccchHHHHHHHHHhcCChhHHHHHhhhcccc--
Q 011051 248 FADNTQALKMTKWMVEYFYNRVQNVI---TKYSVERHWNS---LNEETGGMNDVLYRLYTITQDPKHLLLAHLFDKPC-- 319 (494)
Q Consensus 248 ~tG~~kaL~ia~r~aD~~~~~~~~~~---~k~~~~~~~~~---l~~e~GGm~eaL~~LY~iTGd~ryL~lA~~F~~~~-- 319 (494)
.|||++.|+.|.++.+.....-.... +..+ ..++.. ...+..-+..+++++|++|||++|++.+++|.+.-
T Consensus 190 ~Tgd~~yL~lA~~f~~~~~~~~~~~~~~~d~~~-~~~a~~~~~h~vr~~y~~~g~a~~y~~tgd~~~~~a~~~~w~~v~~ 268 (520)
T PF07944_consen 190 ITGDERYLDLAEYFVDQRGFDPYDLAYGQDHLP-GRHANTHIGHAVRAMYLYSGAADLYEETGDEEYLDAAENFWDNVVR 268 (520)
T ss_pred HhCCHHHHHHHHHHHHHhCCCCCchhhcCccCC-CccccceeeEEEEhhhhhhHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 99999999999888875321100000 0000 011110 01122233458899999999999999999995421
Q ss_pred ---c-chhhhhc--------CCCCCCCcccc----hHHHHHHHHHHHHHhCChhHHHHHHHH-HHHHhhcCceecccCCC
Q 011051 320 ---F-LGLLAVQ--------ADDISGFHANT----HIPVVIGSQMRYEVTGDPLYKVTGTFF-MDIVNASHGYATGGTSA 382 (494)
Q Consensus 320 ---~-~~~la~~--------~d~l~~~HAnt----~ip~~~G~a~~y~~TGD~~yl~a~~~~-w~~v~~~~~y~TGG~g~ 382 (494)
+ .+..... ...++...+.. .+.++.-..+++++|||++|.|..|+. +|-|.. |++.
T Consensus 269 ~~~y~tGg~g~~~~~E~f~~~~~lp~~~~~~EtCas~~~~~~~~~L~~~tgd~~yaD~~Er~lyN~~la-------~~~~ 341 (520)
T PF07944_consen 269 HHMYATGGIGSDHEGEHFGPPYDLPNRLAYAETCASVNMMKLARRLFRLTGDARYADYYERALYNALLA-------GQSP 341 (520)
T ss_pred cCeeccCCCcCCCCCccCCCCCCCCcCCCCccccHHHHHHHHHHHHHhcCCCchHHHHHHHHHhccccc-------ccCC
Confidence 1 1111111 12233222121 344555566889999999999999964 454553 3332
Q ss_pred -CCCCCCCCcccccC---------CCCccccchhhHHHH----HHHHHhccCCCCchHHHH
Q 011051 383 -GEFWSDPKRLASTL---------GTENEESCTTYNMLK----VSRHLFRWTKEMVYADYY 429 (494)
Q Consensus 383 -~E~f~~~~~L~~~l---------~~~~~ETCas~n~lk----l~~~L~~~tgd~~YaD~~ 429 (494)
+-.|..-..|.... .....-.||+.|.++ +...++..+++.-|+..|
T Consensus 342 d~~~~~Y~~pl~~~~~~~~~~~~~~~~~~~~CC~~n~~r~~~~~~~~iy~~~~~~l~v~ly 402 (520)
T PF07944_consen 342 DGGSFFYFNPLNSGPYKHRWKNYRTPWFSFWCCPGNGARGWAKLPDYIYFRDDDGLYVNLY 402 (520)
T ss_pred CCCeeEEecCCccCcCccccccccCCCCCCCCCcchHHHHHHHHhhhheEecCCEEEEEEE
Confidence 12222211111000 012345899988776 667778888777777655
No 5
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.85 E-value=5.2e-09 Score=110.87 Aligned_cols=224 Identities=16% Similarity=0.144 Sum_probs=155.4
Q ss_pred chhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhCCCcccccCCchhHhhhhhcCCCCcccchHH-HHHHHHHHHH
Q 011051 168 FVGHYLSASAHMWASTHNVTLKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFEALKPVWAPYYTIH-KILAGLLDQY 246 (494)
Q Consensus 168 ~~G~~LsA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~~~p~~~~~~l~~~~~~W~p~Y~~h-kl~~GLvd~y 246 (494)
..||-++|+...+..|+.+.+...+-++.|.|...=. |++. =.+.||-| .|-++|+..|
T Consensus 132 ~aghLieg~va~~qaTGkr~lldV~~rlADhi~tvfg----------p~~~----------q~~g~~gH~eielAl~~Ly 191 (589)
T COG3533 132 CAGHLIEGGVAAHQATGKRRLLDVVCRLADHIATVFG----------PEED----------QVPGYCGHPEIELALAELY 191 (589)
T ss_pred HhHHHHhhhhHHHHhhCcchHHHHHHHHHHhhhhhcC----------cccc----------ccccccCCCchhHHHHHHH
Confidence 3699999999999999999999999999999965533 1110 02567765 5888999999
Q ss_pred HHcCChhHHHHHHHHHHHHHHhhcccccccchhhhhhhhcccccchH-------HHHHHHHHhcCChhHHHHHhhhcccc
Q 011051 247 TFADNTQALKMTKWMVEYFYNRVQNVITKYSVERHWNSLNEETGGMN-------DVLYRLYTITQDPKHLLLAHLFDKPC 319 (494)
Q Consensus 247 ~~tG~~kaL~ia~r~aD~~~~~~~~~~~k~~~~~~~~~l~~e~GGm~-------eaL~~LY~iTGd~ryL~lA~~F~~~~ 319 (494)
+.||+++.|+++++|.++-... |. .+...++ + +||. -.+++||++|||+.+...+.+|.+.-
T Consensus 192 ~~Tg~~rYL~LA~~Fi~~rg~~--P~-~~rg~e~-------~-~gHAvr~iyl~~G~A~l~~~~gDds~r~~~~~lW~~~ 260 (589)
T COG3533 192 RLTGDQRYLDLARRFIHQRGVE--PL-AQRGDEL-------E-GGHAVRQIYLYIGAADLAEETGDDSLRQAAEFLWQNV 260 (589)
T ss_pred HHhcChHHHHHHHHHHHHhccC--hh-hcCchhh-------h-hhhHHHHHHHhhhHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9999999999999999985543 31 1112221 1 4443 27899999999999999999996531
Q ss_pred ------cchhh-hhc-----CCCCCCCcccc----hHHHHHHHHHHHHHhCChhHHHHHHH-HHHHHhhcCceecccCCC
Q 011051 320 ------FLGLL-AVQ-----ADDISGFHANT----HIPVVIGSQMRYEVTGDPLYKVTGTF-FMDIVNASHGYATGGTSA 382 (494)
Q Consensus 320 ------~~~~l-a~~-----~d~l~~~HAnt----~ip~~~G~a~~y~~TGD~~yl~a~~~-~w~~v~~~~~y~TGG~g~ 382 (494)
+.+-. +.+ .+++++.-++. .+.++.-+.++...++|..|.|..|+ ++|-+.. |.+.
T Consensus 261 t~k~~YitGG~g~~~E~F~~~ydlpn~~~yAEtCas~~l~~~a~Rml~~~~d~~yaDvmErALYN~iL~-------g~sl 333 (589)
T COG3533 261 TTRQSYITGGNGSSNEHFGPDYDLPNRTAYAETCASYNLLKLARRMLGWGPDSQYADVMERALYNHILA-------GQSL 333 (589)
T ss_pred hhhheEEecccCCccccCCccccCcccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHhcccc-------ccCC
Confidence 11211 111 24455443332 56777777788999999999999984 6665554 7773
Q ss_pred -CCCCCCCCcccccCCC----CccccchhhHHHHH----HHHHhccCCCCchHHHH
Q 011051 383 -GEFWSDPKRLASTLGT----ENEESCTTYNMLKV----SRHLFRWTKEMVYADYY 429 (494)
Q Consensus 383 -~E~f~~~~~L~~~l~~----~~~ETCas~n~lkl----~~~L~~~tgd~~YaD~~ 429 (494)
+-+|...+.|...... -..--||.-|.+++ ..+|+-..+|..|...|
T Consensus 334 Dg~~ffY~nPle~~grh~r~~w~~c~CCppn~ar~~as~g~yiY~~~~d~lyvnLy 389 (589)
T COG3533 334 DGGMFFYFNPLESGGRHSRQKWFSCWCCPPNGARSVASIGDYIYTRADDALYVNLY 389 (589)
T ss_pred CCCeeEEecchhhCCCccccccccCCCCCCcHhhhhhhccceEEccCCCEEEEEEe
Confidence 6677766655543221 24456888887763 45566666777776655
No 6
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=98.68 E-value=8.5e-07 Score=92.39 Aligned_cols=219 Identities=12% Similarity=0.075 Sum_probs=136.4
Q ss_pred ccchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHhhcccc-ccc--chhhhhhhhc-----ccccchHHHHHHHHHh
Q 011051 231 PYYTIHKILAGLLDQYTFADNTQALKMTKWMVEYFYNRVQNVI-TKY--SVERHWNSLN-----EETGGMNDVLYRLYTI 302 (494)
Q Consensus 231 p~Y~~hkl~~GLvd~y~~tG~~kaL~ia~r~aD~~~~~~~~~~-~k~--~~~~~~~~l~-----~e~GGm~eaL~~LY~i 302 (494)
..|...-++-++..+|+++|++++++.|++.++++.+.+.... +.. ....-..... ..+.=+-.++..+|++
T Consensus 51 ~~~~~ar~i~~~a~a~~~~~~~~~l~~A~~~~~fl~~~~~d~~~Gg~~~~~~~~g~~~~~~~~l~~~a~~l~ala~~~~a 130 (384)
T cd00249 51 RLWLQARQVYCFAVAYLLGWRPEWLEAAEHGLEYLDRHGRDPDHGGWYFALDQDGRPVDATKDLYSHAFALLAAAQAAKV 130 (384)
T ss_pred eEEEecHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhCcCCCCCCEEEEEcCCCCCcccccchHHHHHHHHHHHHHHHh
Confidence 3677778889999999999999999999999999998764311 110 0000000000 0111122588999999
Q ss_pred cCChhHHHHHhhhcc---cccc-------hhhhhcCCCCCCCcccchHHHHHHHHHHHHHhCChhHHHHHHHHHHHHhhc
Q 011051 303 TQDPKHLLLAHLFDK---PCFL-------GLLAVQADDISGFHANTHIPVVIGSQMRYEVTGDPLYKVTGTFFMDIVNAS 372 (494)
Q Consensus 303 TGd~ryL~lA~~F~~---~~~~-------~~la~~~d~l~~~HAnt~ip~~~G~a~~y~~TGD~~yl~a~~~~w~~v~~~ 372 (494)
|||++||++|+...+ ..++ .....+...+++ .|.+.-.+.++.+++++|||++|++.++.+++.+.++
T Consensus 131 t~d~~~l~~A~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~h~~~all~l~~~tgd~~~~~~A~~l~~~~~~~ 208 (384)
T cd00249 131 GGDPEARALAEETIDLLERRFWEDHPGAFDEADPGTPPYRG--SNPHMHLLEAMLAAYEATGEQKYLDRADEIADLILDR 208 (384)
T ss_pred cCCHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCCCCCC--CChhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 999999999966522 2222 111111122333 4666666788999999999999999999999998864
Q ss_pred Cc-eecccCCCCCCCCCCCcccccCCCCccccchhhHHHHHHHHHhccCCCCchHHHHHHHHhhhhhc-cCCCCCCCeEE
Q 011051 373 HG-YATGGTSAGEFWSDPKRLASTLGTENEESCTTYNMLKVSRHLFRWTKEMVYADYYERALTNGVLS-IQRGTEPGVMI 450 (494)
Q Consensus 373 ~~-y~TGG~g~~E~f~~~~~L~~~l~~~~~ETCas~n~lkl~~~L~~~tgd~~YaD~~Er~LyN~iLa-~~~~~d~g~~~ 450 (494)
-. ...|++ -|.+..+..+.........+.-....++.+.-+|.+++|+.+|.+..++. ++.++. +.++ +.|.++
T Consensus 209 ~~~~~~G~~--~e~~~~~~~~~~~~~~~~~~Pgh~~e~a~~ll~l~~~~~~~~~~~~a~~~-~~~~~~~~~d~-~~G~~~ 284 (384)
T cd00249 209 FIDAESGVV--REHFDEDWNPYNGDKGRHQEPGHQFEWAWLLLRIASRSGQAWLIEKARRL-FDLALALGWDP-ERGGLY 284 (384)
T ss_pred hcCcccCeE--EEEECCCCCCCcCcCCCcCCCchHHHHHHHHHHHHhhcCCHHHHHHHHHH-HHHHHHhCcCc-cCCCEE
Confidence 32 234554 25554322111100111122222334556666778889999999999875 566665 4566 666676
Q ss_pred E-ecCC
Q 011051 451 Y-MLPL 455 (494)
Q Consensus 451 Y-~~pL 455 (494)
| +.+-
T Consensus 285 ~~~~~~ 290 (384)
T cd00249 285 YSFLDD 290 (384)
T ss_pred EeeECC
Confidence 7 5543
No 7
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=98.35 E-value=1.2e-05 Score=84.71 Aligned_cols=187 Identities=16% Similarity=0.106 Sum_probs=109.6
Q ss_pred hhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhCCCcccccCCchhHhhhhhcCCCCcccc-hHHHHHHHHHHHHH
Q 011051 169 VGHYLSASAHMWASTHNVTLKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFEALKPVWAPYY-TIHKILAGLLDQYT 247 (494)
Q Consensus 169 ~G~~LsA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~~~p~~~~~~l~~~~~~W~p~Y-~~hkl~~GLvd~y~ 247 (494)
.|+.+++++..+..++|++..+.+...+.....-.. +-|...... .+ .+| .+.-+..+++++|+
T Consensus 38 ~a~~~~~~~d~~~~t~d~~y~~~~~~~~~~~~~~~~---~~~~~~~~~-----------~~-~~~DD~aw~~la~l~aye 102 (370)
T PF03663_consen 38 QAVMLSALIDYYRRTGDPTYNDLIQNALLNQRGPNY---DSYNPSNGS-----------GD-RYYDDNAWWALALLRAYE 102 (370)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTT---SSS--S------------------BHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcchHHHHHHHHHHHHhcccc---ccccccccc-----------cc-CccChHHHHHHHHHHHHH
Confidence 589999999999999998888888877776543321 113222100 00 111 22346788999999
Q ss_pred HcCCh-----hHHHHHHHHHHHHHHhhcccccccchhhhhhhh----------cccccchHHHHHHHHHhcCChhHHHHH
Q 011051 248 FADNT-----QALKMTKWMVEYFYNRVQNVITKYSVERHWNSL----------NEETGGMNDVLYRLYTITQDPKHLLLA 312 (494)
Q Consensus 248 ~tG~~-----kaL~ia~r~aD~~~~~~~~~~~k~~~~~~~~~l----------~~e~GGm~eaL~~LY~iTGd~ryL~lA 312 (494)
+||++ +.|+.+++..+++........ .+-.-+|..- .+.-|..-...++||++|||++||+.|
T Consensus 103 ~t~~~~~~~~~yL~~A~~i~~~~~~~wd~~~--cgGGi~W~~~~~~~~~~~Kna~sN~~~~~laarL~~~t~~~~Yl~~A 180 (370)
T PF03663_consen 103 LTGDQPSDNPKYLDLAKEIFDFLISGWDDTS--CGGGIWWSIDDTNSGYDYKNAISNGPAAQLAARLYRITGDQTYLDWA 180 (370)
T ss_dssp HH--H-----HHHHHHHHHHHHHHHTB-SGG---GS-BEEET----TEEEEEEHHHHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred hhCCCcchHHHHHHHHHHHHHHHHHhcCCcc--CCCCccccccccCCCCCcccccchHHHHHHHHHHHHhcCChHHHHHH
Confidence 99999 999999999999986654421 0011123210 001112225788999999999999999
Q ss_pred hhhcc---c-ccchhh----hhcC-------CCCCCCcccchHHHHHHHHHHHHHhCCh-hHHHHHHHHHHHHhhc
Q 011051 313 HLFDK---P-CFLGLL----AVQA-------DDISGFHANTHIPVVIGSQMRYEVTGDP-LYKVTGTFFMDIVNAS 372 (494)
Q Consensus 313 ~~F~~---~-~~~~~l----a~~~-------d~l~~~HAnt~ip~~~G~a~~y~~TGD~-~yl~a~~~~w~~v~~~ 372 (494)
++..+ . .++++- ..+. +.-.....+.+=-.+.|++.+|+.|+|+ .|++.++++-+-+.++
T Consensus 181 ~~~~~W~~~~~L~d~~~g~v~Dg~~~~~~c~~~~~~~~TYNqG~~l~a~~~Ly~~T~~~~~yl~~A~~la~~~~~~ 256 (370)
T PF03663_consen 181 KKIYDWMRDSGLIDPSTGLVYDGINIDGNCTNINKTKWTYNQGVFLGAAAYLYNATNDEQTYLDRAEKLADAAINH 256 (370)
T ss_dssp HHHHHHHHH-HHB--TTS-B--EE-TTSSS-B-TT---HHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcceeEECCCcEEEeCCccCCCCCcCCCceechHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHH
Confidence 88743 2 333221 0111 1111123333444578888999999887 9999999999998865
No 8
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=98.33 E-value=4.5e-06 Score=87.86 Aligned_cols=187 Identities=19% Similarity=0.127 Sum_probs=107.1
Q ss_pred cchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHhhcc-cccc------cchhhhhhhhcccccchHHHHHHHHHhcC
Q 011051 232 YYTIHKILAGLLDQYTFADNTQALKMTKWMVEYFYNRVQN-VITK------YSVERHWNSLNEETGGMNDVLYRLYTITQ 304 (494)
Q Consensus 232 ~Y~~hkl~~GLvd~y~~tG~~kaL~ia~r~aD~~~~~~~~-~~~k------~~~~~~~~~l~~e~GGm~eaL~~LY~iTG 304 (494)
++..++++.+++++++.+|+++..+++.+........... ..+. .-++..| .-.+++++|++||
T Consensus 35 ~W~~a~~~~~~~d~~~~t~d~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DD~aw---------~~la~l~aye~t~ 105 (370)
T PF03663_consen 35 WWWQAVMLSALIDYYRRTGDPTYNDLIQNALLNQRGPNYDSYNPSNGSGDRYYDDNAW---------WALALLRAYELTG 105 (370)
T ss_dssp -HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTTSSS--S------BHHHHHH---------HHHHHHHHHHHH-
T ss_pred cChHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHhcccccccccccccccCccChHHH---------HHHHHHHHHHhhC
Confidence 3677889999999999999999999998877776544311 1110 0011111 1138999999999
Q ss_pred Ch-----hHHHHHhhhccc--ccchhhh--hcC--------CCCCCCcccchHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q 011051 305 DP-----KHLLLAHLFDKP--CFLGLLA--VQA--------DDISGFHANTHIPVVIGSQMRYEVTGDPLYKVTGTFFMD 367 (494)
Q Consensus 305 d~-----ryL~lA~~F~~~--~~~~~la--~~~--------d~l~~~HAnt~ip~~~G~a~~y~~TGD~~yl~a~~~~w~ 367 (494)
++ +||++|+...+. ..++... .|. .......+.+.-|.+..++++|++|||+.|++.+++.|+
T Consensus 106 ~~~~~~~~yL~~A~~i~~~~~~~wd~~~cgGGi~W~~~~~~~~~~~Kna~sN~~~~~laarL~~~t~~~~Yl~~A~~~~~ 185 (370)
T PF03663_consen 106 DQPSDNPKYLDLAKEIFDFLISGWDDTSCGGGIWWSIDDTNSGYDYKNAISNGPAAQLAARLYRITGDQTYLDWAKKIYD 185 (370)
T ss_dssp -H-----HHHHHHHHHHHHHHHTB-SGG-GS-BEEET----TEEEEEEHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHHHhcCCccCCCCccccccccCCCCCcccccchHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 99 999999887432 1112111 110 011112344577788999999999999999999999999
Q ss_pred HHhhcCce-e-cccCCCCCCCCCCCcccccCCCCccccchhhH---HHHHHHHHhccCCCC-chHHHHHHHHh
Q 011051 368 IVNASHGY-A-TGGTSAGEFWSDPKRLASTLGTENEESCTTYN---MLKVSRHLFRWTKEM-VYADYYERALT 434 (494)
Q Consensus 368 ~v~~~~~y-~-TGG~g~~E~f~~~~~L~~~l~~~~~ETCas~n---~lkl~~~L~~~tgd~-~YaD~~Er~Ly 434 (494)
.+.+..++ . +|-+- .......+- ....++-=||| +|.-+-.|++.|++. .|.|..++++-
T Consensus 186 W~~~~~L~d~~~g~v~--Dg~~~~~~c-----~~~~~~~~TYNqG~~l~a~~~Ly~~T~~~~~yl~~A~~la~ 251 (370)
T PF03663_consen 186 WMRDSGLIDPSTGLVY--DGINIDGNC-----TNINKTKWTYNQGVFLGAAAYLYNATNDEQTYLDRAEKLAD 251 (370)
T ss_dssp HHHH-HHB--TTS-B----EE-TTSSS------B-TT---HHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHH
T ss_pred HhhcceeEECCCcEEE--eCCccCCCC-----CcCCCceechHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 99985555 1 12221 100000000 01222223333 455677899999776 99999988763
No 9
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=9.3e-05 Score=82.13 Aligned_cols=258 Identities=17% Similarity=0.102 Sum_probs=143.8
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhCCCcccccCCchhHhhhhhcCCCCcc---cchHHHHHHHHHHHH
Q 011051 170 GHYLSASAHMWASTHNVTLKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFEALKPVWAP---YYTIHKILAGLLDQY 246 (494)
Q Consensus 170 G~~LsA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~~~p~~~~~~l~~~~~~W~p---~Y~~hkl~~GLvd~y 246 (494)
...|.+.+.+|+.|+|+..+..++.+++.|.+-=-..+.||-++-..+.+. -+..--.|.+ ...+|....-++.+|
T Consensus 276 A~l~~~y~~ay~~tgd~~y~~~a~~i~~~l~rel~sp~ggFyss~DAD~~g-~EG~~Y~Ws~eEi~~~Lg~d~~~~~~~f 354 (667)
T COG1331 276 ALLLRAYAEAYRATGDDLYRRAAEGILDYLLRELYSPEGGFYSSLDADSDG-EEGKYYTWSVEELKEVLGEDAELACKYF 354 (667)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCceeecccccCcc-cCCCeeecCHHHHHHHhcccHHHHHHHc
Confidence 567889999999999999999999999999876554233454443221111 0111122321 122222333344555
Q ss_pred HHcCCh-----------------------hHHHHHHHHHHHHHHhhcccccccchhhhhhhhcccc-cchHHHHHHHHHh
Q 011051 247 TFADNT-----------------------QALKMTKWMVEYFYNRVQNVITKYSVERHWNSLNEET-GGMNDVLYRLYTI 302 (494)
Q Consensus 247 ~~tG~~-----------------------kaL~ia~r~aD~~~~~~~~~~~k~~~~~~~~~l~~e~-GGm~eaL~~LY~i 302 (494)
.++..- ++-.+-.|+..+--+|..|..++ + ++. .+ |=|..+|.+.+++
T Consensus 355 ~vs~~GnfeGrnvL~~~~~~~~~~~~~~~~l~~~r~kL~~~R~~R~~P~~Dd----k---vlt-~wNglmi~aLa~a~~~ 426 (667)
T COG1331 355 DVSEEGNFEGRNVLHVPGPLEEAIEEAEEKLERAREKLLAAREKRKQPSRDD----K---VLT-DWNGLMIAALAEAGRV 426 (667)
T ss_pred ccCCCCCcCCceeecccCchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCCc----c---eee-ccHHHHHHHHHHHHHH
Confidence 444211 11122223333333333222111 1 111 11 3355799999999
Q ss_pred cCChhHHHHHhhhcc---cccchh-hh----hcCCCCCCCcccchHHHHHHHHHHHHHhCChhHHHHHHHHHHHHhhcCc
Q 011051 303 TQDPKHLLLAHLFDK---PCFLGL-LA----VQADDISGFHANTHIPVVIGSQMRYEVTGDPLYKVTGTFFMDIVNASHG 374 (494)
Q Consensus 303 TGd~ryL~lA~~F~~---~~~~~~-la----~~~d~l~~~HAnt~ip~~~G~a~~y~~TGD~~yl~a~~~~w~~v~~~~~ 374 (494)
+||++|+++|++-.+ ..+++. +. .|.-...+ -.-....++.|+..+|++|+|.+|++.|+.+++.++..--
T Consensus 427 ~~d~~~l~~A~~~~~fi~~~l~~~rl~~~~~~G~a~~~g-~leDYA~~i~gll~lye~t~d~~yL~~A~~L~~~~i~~f~ 505 (667)
T COG1331 427 LGDPEYLEAAERAADFILDNLYVDRLLRRYRGGEAAVAG-LLEDYAFLILGLLALYEATGDLAYLEKAIELADEAIADFW 505 (667)
T ss_pred cCChHHHHHHHHHHHHHHHhhcccchheeeecCcccccc-cchhHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhc
Confidence 999999999987532 222221 11 11111111 1112455778999999999999999999999999986543
Q ss_pred eecccC----CCCCCCC-CCCcccccCCCCccccchhhHHHHHHHHHhccCCCCchHHHHHHHH--hhhhhccCC
Q 011051 375 YATGGT----SAGEFWS-DPKRLASTLGTENEESCTTYNMLKVSRHLFRWTKEMVYADYYERAL--TNGVLSIQR 442 (494)
Q Consensus 375 y~TGG~----g~~E~f~-~~~~L~~~l~~~~~ETCas~n~lkl~~~L~~~tgd~~YaD~~Er~L--yN~iLa~~~ 442 (494)
=.+||. +.+|... .+.+.. ..-.++=+++... -.-+|-++|||.+|.|..|++| +=+.+....
T Consensus 506 d~~gGf~~t~~~~~~l~ir~~~~~----D~a~~S~na~~~~-~L~~Ls~ltg~~~y~e~A~~~L~a~~~~~~~~p 575 (667)
T COG1331 506 DDEGGFYDTPSDSEDLLIRPKEPT----DGATPSGNAVAAQ-ALLRLSLLTGDARYLEAAEDILQAFAGLAERAP 575 (667)
T ss_pred CCCCCcccCCCcccccccCCCCCC----CCCCCCHHHHHHH-HHHHHHhhcCchhHHHHHHHHHHHHHHHHHhCC
Confidence 344552 2223221 122111 1222343443332 3446788999999999999998 665555443
No 10
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=97.95 E-value=0.00043 Score=70.33 Aligned_cols=178 Identities=14% Similarity=-0.012 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHhhcccccccc--hhhh-hhhhcccccchHHHHHHHHHhcCChhHHHHHhh
Q 011051 238 ILAGLLDQYTFADNTQALKMTKWMVEYFYNRVQNVITKYS--VERH-WNSLNEETGGMNDVLYRLYTITQDPKHLLLAHL 314 (494)
Q Consensus 238 l~~GLvd~y~~tG~~kaL~ia~r~aD~~~~~~~~~~~k~~--~~~~-~~~l~~e~GGm~eaL~~LY~iTGd~ryL~lA~~ 314 (494)
++.+++..|+. |+++.++++++.++++.+...+...... .... -.-+.....|+..+|.+||+.|||++|++.|+.
T Consensus 88 ~~~~ll~l~~~-~~~~~l~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~hG~aGi~~~L~~l~~~t~d~~~l~~A~~ 166 (321)
T cd04791 88 IGLALLYFART-GDPALLEAAAKIAELLAEALERGDPALLWPDFDRVDHGLLHGWAGIALFLLRLYKATGDSRYLELAEE 166 (321)
T ss_pred HHHHHHHHHhc-CChHHHHHHHHHHHHHHHHhhccccccccccCCCCCCccccCcHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 55667788888 9999999999999998776432100000 0000 001122444777899999999999999999987
Q ss_pred hcccc--cchhhh------hcCC-CC-CCCcccchHHHHHHHHHHHHHhCChhHHHHHHHHHHHHhhcCceecccCCCCC
Q 011051 315 FDKPC--FLGLLA------VQAD-DI-SGFHANTHIPVVIGSQMRYEVTGDPLYKVTGTFFMDIVNASHGYATGGTSAGE 384 (494)
Q Consensus 315 F~~~~--~~~~la------~~~d-~l-~~~HAnt~ip~~~G~a~~y~~TGD~~yl~a~~~~w~~v~~~~~y~TGG~g~~E 384 (494)
..+.. .+.+.. .+.+ .. .-.|.+.- +.....++++.++|++|++.++...+.+....
T Consensus 167 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~wchG~aG--i~~~l~~l~~~~~d~~~~~~a~~~~~~~~~~~----------- 233 (321)
T cd04791 167 ALDKELARAVVDDGGLLQVDEGARLLPYLCSGSAG--LGLLMLRLEAITGDKRWRDEADGIAHAALSSC----------- 233 (321)
T ss_pred HHHHHHHhhccCCCCceEcCCCCccCcccCCCcHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhh-----------
Confidence 74321 011100 0111 11 12243332 23445578999999999999999988887531
Q ss_pred CCCCCCcccccCCCCccccchhhHHHHHHHHHhccCCCCchHHHHHHHHhhhhhccCC
Q 011051 385 FWSDPKRLASTLGTENEESCTTYNMLKVSRHLFRWTKEMVYADYYERALTNGVLSIQR 442 (494)
Q Consensus 385 ~f~~~~~L~~~l~~~~~ETCas~n~lkl~~~L~~~tgd~~YaD~~Er~LyN~iLa~~~ 442 (494)
+ ....=.|.+.+.+.+...+.+.++|.+|.+..++.. ..++..-.
T Consensus 234 -~-----------~~~~lchG~~G~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 278 (321)
T cd04791 234 -Y-----------ANPGLFSGTAGLGAHLNDLAAEGDNALYKAAAERLA-LYLIATAD 278 (321)
T ss_pred -c-----------cCccccCCcHhHHHHHHhhcccccChHHHHHHHHHH-HHhccccC
Confidence 1 012345667788888888899999999999998865 67675543
No 11
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=97.87 E-value=0.00034 Score=71.14 Aligned_cols=185 Identities=15% Similarity=0.083 Sum_probs=115.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhCCCcccccCCchhHhhhhhcCCCCcccchHHHHHHHHHHHHHHcCC
Q 011051 172 YLSASAHMWASTHNVTLKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFEALKPVWAPYYTIHKILAGLLDQYTFADN 251 (494)
Q Consensus 172 ~LsA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~~~p~~~~~~l~~~~~~W~p~Y~~hkl~~GLvd~y~~tG~ 251 (494)
.+-++..++.. +|+++.+.+.++++.|.+......++ . .++. .......|..-| .-++.+|+..|+.||+
T Consensus 88 ~~~~ll~l~~~-~~~~~l~~a~~~~~~l~~~~~~~~~~-~-~~~~-----~~~~~~G~~hG~--aGi~~~L~~l~~~t~d 157 (321)
T cd04791 88 IGLALLYFART-GDPALLEAAAKIAELLAEALERGDPA-L-LWPD-----FDRVDHGLLHGW--AGIALFLLRLYKATGD 157 (321)
T ss_pred HHHHHHHHHhc-CChHHHHHHHHHHHHHHHHhhccccc-c-cccc-----CCCCCCccccCc--HHHHHHHHHHHHHHCC
Confidence 45556666777 99999999999999998765421121 1 1100 000001122212 2377889999999999
Q ss_pred hhHHHHHHHHHHHHHHhhcccccccc--h--hhhhhhhcccccchHHHHHHHHHhcCChhHHHHHhhhcccccchhhhhc
Q 011051 252 TQALKMTKWMVEYFYNRVQNVITKYS--V--ERHWNSLNEETGGMNDVLYRLYTITQDPKHLLLAHLFDKPCFLGLLAVQ 327 (494)
Q Consensus 252 ~kaL~ia~r~aD~~~~~~~~~~~k~~--~--~~~~~~l~~e~GGm~eaL~~LY~iTGd~ryL~lA~~F~~~~~~~~la~~ 327 (494)
++.++.+++.+++..+.+.+...... . ......+.....|+..++.+||++|+|++|++.|+...+... ...
T Consensus 158 ~~~l~~A~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~wchG~aGi~~~l~~l~~~~~d~~~~~~a~~~~~~~~----~~~ 233 (321)
T cd04791 158 SRYLELAEEALDKELARAVVDDGGLLQVDEGARLLPYLCSGSAGLGLLMLRLEAITGDKRWRDEADGIAHAAL----SSC 233 (321)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCCceEcCCCCccCcccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh----hhh
Confidence 99999999999999887643111000 0 000001122344888899999999999999999988754331 001
Q ss_pred CCCCCCCcccchHHHHHHHHHHHHHhCChhHHHHHHHHHHHHhhc
Q 011051 328 ADDISGFHANTHIPVVIGSQMRYEVTGDPLYKVTGTFFMDIVNAS 372 (494)
Q Consensus 328 ~d~l~~~HAnt~ip~~~G~a~~y~~TGD~~yl~a~~~~w~~v~~~ 372 (494)
.....-.|-..- +..-+..+++.++|++|++.+.++.+.+..+
T Consensus 234 ~~~~~lchG~~G--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (321)
T cd04791 234 YANPGLFSGTAG--LGAHLNDLAAEGDNALYKAAAERLALYLIAT 276 (321)
T ss_pred ccCccccCCcHh--HHHHHHhhcccccChHHHHHHHHHHHHhccc
Confidence 111112243222 2333446678999999999999998888754
No 12
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=97.83 E-value=0.0023 Score=66.11 Aligned_cols=242 Identities=15% Similarity=0.048 Sum_probs=140.1
Q ss_pred hhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhCCCcccccCCchhHhhhhhcCCCCcccchHHHHHHHHHHHHHH
Q 011051 169 VGHYLSASAHMWASTHNVTLKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFEALKPVWAPYYTIHKILAGLLDQYTF 248 (494)
Q Consensus 169 ~G~~LsA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~~~p~~~~~~l~~~~~~W~p~Y~~hkl~~GLvd~y~~ 248 (494)
-|-++.|+..++..|+|+++++.+.+.++.+...+. . .+. ....+++.++ +..|+.
T Consensus 27 ~G~~~~gl~~~~~~tgd~~~~~~a~~~~~~~~~~~~--~-----~~~--------------~d~~~~g~~~---~~~y~~ 82 (336)
T PF07470_consen 27 NGVFWYGLLEAYEYTGDERYLDYAERWADRFIEEDG--S-----DYN--------------LDDHDIGFLL---LDLYER 82 (336)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH--T-----TTS--------------CCGTTHHHHH---HHHHHH
T ss_pred hhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhccC--C-----ccC--------------CchhhhHHHH---HHHHHH
Confidence 477888888999999999999999999998877776 2 000 1122344444 578999
Q ss_pred cCChhHHHHHHHHHHHHHHhhccc-ccccchhhh--hhhhcccccchH-HHHHHHHHhcCChhHHHHHhhhcc---cccc
Q 011051 249 ADNTQALKMTKWMVEYFYNRVQNV-ITKYSVERH--WNSLNEETGGMN-DVLYRLYTITQDPKHLLLAHLFDK---PCFL 321 (494)
Q Consensus 249 tG~~kaL~ia~r~aD~~~~~~~~~-~~k~~~~~~--~~~l~~e~GGm~-eaL~~LY~iTGd~ryL~lA~~F~~---~~~~ 321 (494)
||+++.++++.+.+|++.+...+. .+....... ..+.. -.-.|+ ..|++++++|||++|++.|..-.. ...+
T Consensus 83 t~d~~y~~~~~~~a~~~l~~~~~~~~G~~~~~~~~~~~~wi-D~~~M~~p~l~~~~~~tgd~~~~~~a~~q~~~~~~~~~ 161 (336)
T PF07470_consen 83 TGDEKYKDAAIQAADWLLARRPRTSDGGFWHNRPYPNQVWI-DGMYMNLPFLAWAGKLTGDPKYLDEAVRQFRLTRKYLY 161 (336)
T ss_dssp H-THHHHHHHHHHHHHHHHTSCBECTGCBECTTTSTTEEET-THHHHHHHHHHHHHHHHTGHHHHHHHHHHHHHHHHHHB
T ss_pred hCCHHHHHHHHHHHHHHHHhCCCCCCCccccCCCCCCceee-ccccccHHHHHHHHHHHCCcHHHHHHHHHHHHHHHhcc
Confidence 999999999999999888765331 011000000 00000 111234 689999999999999999955422 1223
Q ss_pred hhh----hhc-----CCCC-CCCcccchHHHHHHHHHHHHHhCC-----hhHHHHHHHHHHHHhhcCceecccCCCCCCC
Q 011051 322 GLL----AVQ-----ADDI-SGFHANTHIPVVIGSQMRYEVTGD-----PLYKVTGTFFMDIVNASHGYATGGTSAGEFW 386 (494)
Q Consensus 322 ~~l----a~~-----~d~l-~~~HAnt~ip~~~G~a~~y~~TGD-----~~yl~a~~~~w~~v~~~~~y~TGG~g~~E~f 386 (494)
++. ..+ ..+- ....+-.+--.+.|++++|+...+ +.+++.++.+.+.+.+.+- ..|.... .|
T Consensus 162 d~~tGl~~h~~~~~~~~~~s~~~WsRG~gW~~~Gl~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~~q~-~~G~w~~--~~ 238 (336)
T PF07470_consen 162 DPETGLYYHGYTYQGYADWSDSFWSRGNGWAIYGLAEVLEYLPEDHPERDELLEIAKKLADALARYQD-EDGLWYQ--DL 238 (336)
T ss_dssp -TTTSSBESEEETTSSSTTST--BHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTST-TTSBEBS--BT
T ss_pred CCCCCceeeccCCCCCcCcccccCcchhhHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHhcCC-CCCCcce--ec
Confidence 331 011 0000 011222344567999999998744 6777777777777665433 3333321 11
Q ss_pred CCCCcccccCCCCccccchhhHHHH-HHHHH-hccCCCCchHHHHHHHHhhhhhcc-CCCCCC
Q 011051 387 SDPKRLASTLGTENEESCTTYNMLK-VSRHL-FRWTKEMVYADYYERALTNGVLSI-QRGTEP 446 (494)
Q Consensus 387 ~~~~~L~~~l~~~~~ETCas~n~lk-l~~~L-~~~tgd~~YaD~~Er~LyN~iLa~-~~~~d~ 446 (494)
..|. +..+.||.+|.-... +.+-+ ..+..+.+|.+..||++ ++++.. +++ ||
T Consensus 239 ~~~~------~~~~~etSatA~~a~~l~~gi~~g~~d~~~y~~~a~~a~-~~l~~~~~~~-dG 293 (336)
T PF07470_consen 239 DDPD------PGNYRETSATAMFAYGLLRGIRLGLLDPEEYRPAAEKAL-EALLSNAIDP-DG 293 (336)
T ss_dssp TTTT------TTS-BEHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHH-HHHHHCEB-T-TS
T ss_pred CCCC------CCCcccHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHH-HHHHhCccCC-CC
Confidence 1111 235778877742222 22212 34444778999999864 888888 776 54
No 13
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=97.50 E-value=0.0017 Score=67.22 Aligned_cols=191 Identities=21% Similarity=0.214 Sum_probs=112.7
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhC-CCcccccCCchhHhhhhhcCCCCcc--cchHH-HHHHHHHHH
Q 011051 170 GHYLSASAHMWASTHNVTLKEKMTAVVSALSECQNKM-GSGYLSAFPSEQFDRFEALKPVWAP--YYTIH-KILAGLLDQ 245 (494)
Q Consensus 170 G~~LsA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~-~dGYL~~~p~~~~~~l~~~~~~W~p--~Y~~h-kl~~GLvd~ 245 (494)
...|-|+|. +..++|++.++.++++++.|.+--... ..||...++. .|.+ ..+.| |+++++++.
T Consensus 84 af~l~ala~-~~~tg~~~~~~~A~~~~~~l~~~~~d~~~g~~~~~~~~-----------~~~~~r~~n~~mhl~eA~l~l 151 (346)
T PF07221_consen 84 AFALLALAE-ARATGDPEALELAEQTLEFLERRFWDPEGGGYRESFDP-----------DWSPPRGQNPHMHLLEAFLAL 151 (346)
T ss_dssp HHHHHHHHH-HHCTT-TTHHHHHHHHHHHHHHHTEETTTTEE--EETT-----------TSSCBEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHhCChhHHHHHHHHHHHHHHHhcccccCcceeccCC-----------ccccCCCCChhHHHHHHHHHH
Confidence 456788888 788999999999999999987774321 2355544332 2222 24444 889999999
Q ss_pred HHHcCChhHHHHHHHHHHHHHHhhcccccccchh---hhhhhhc------------ccccchH-HH---HHHHH--HhcC
Q 011051 246 YTFADNTQALKMTKWMVEYFYNRVQNVITKYSVE---RHWNSLN------------EETGGMN-DV---LYRLY--TITQ 304 (494)
Q Consensus 246 y~~tG~~kaL~ia~r~aD~~~~~~~~~~~k~~~~---~~~~~l~------------~e~GGm~-ea---L~~LY--~iTG 304 (494)
|+++|+++.++.+.++++.+.+.|-......-.+ ..|..+. .+ .||+ |. |.++. ...+
T Consensus 152 ~~~~~~~~~~~~a~~l~~~~~~~f~~~~~g~~~E~f~~dw~~~~~~~~~d~~~~~~~~-pGH~~E~~wll~~~~~~~~~~ 230 (346)
T PF07221_consen 152 YEATGDPRYLDRAEELLDLFLDRFADPESGALPEFFDRDWNPLPDGSGDDTFRGRIVE-PGHDFEWAWLLLEAARLTGRG 230 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHCCTTEETSEEETTSEBETTTTTTHSTTTSSB--HHHHHHHHHHHHHHHHHCHCT
T ss_pred HHhccCHHHHHHHHHHHHHHHHHHHHhccCeeeeeeccccccccccccccccccCccC-CchhHHHHHHHHHHHHhcccc
Confidence 9999999999999999999987663210100001 1111110 11 2554 43 44444 3457
Q ss_pred ChhHHHHHhhhccccc---chhhhhc----CCCC--CCCccc---chHHHHHHHHHHHHHhCChhHHHHHHHHHHHHhhc
Q 011051 305 DPKHLLLAHLFDKPCF---LGLLAVQ----ADDI--SGFHAN---THIPVVIGSQMRYEVTGDPLYKVTGTFFMDIVNAS 372 (494)
Q Consensus 305 d~ryL~lA~~F~~~~~---~~~la~~----~d~l--~~~HAn---t~ip~~~G~a~~y~~TGD~~yl~a~~~~w~~v~~~ 372 (494)
++++++.|..+....+ +++-..+ .|.- +..... .|.=.+.++..+|+.|||+.|++.+++.|+.+.++
T Consensus 231 ~~~~~~~a~~l~~~~~~~G~d~~~gG~~~~~d~~g~~~~~~k~wW~q~Eal~a~~~~~~~tg~~~~~~~~~~~~~~~~~~ 310 (346)
T PF07221_consen 231 DPDWLERARRLFDFALEHGWDREGGGLFYSVDRDGKPPDRSKRWWPQAEALKALLAAYELTGDEKYLDWARRVWDYIFRH 310 (346)
T ss_dssp -HTHHHHHHHHHHHHHHHHBSTTTSSB-SEEETTS-BSST-EEHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHheEecCCCeEEEEEeCCCCccccCccccHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHh
Confidence 8999998866533211 1110000 0110 000111 13445677889999999999999999999988754
Q ss_pred C
Q 011051 373 H 373 (494)
Q Consensus 373 ~ 373 (494)
-
T Consensus 311 ~ 311 (346)
T PF07221_consen 311 F 311 (346)
T ss_dssp T
T ss_pred C
Confidence 3
No 14
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=97.38 E-value=0.0029 Score=65.56 Aligned_cols=231 Identities=16% Similarity=0.157 Sum_probs=141.8
Q ss_pred hhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhC-CCcccccCCchhHhhhhhcCCCCcccchHHHHHHHHHHHHH
Q 011051 169 VGHYLSASAHMWASTHNVTLKEKMTAVVSALSECQNKM-GSGYLSAFPSEQFDRFEALKPVWAPYYTIHKILAGLLDQYT 247 (494)
Q Consensus 169 ~G~~LsA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~-~dGYL~~~p~~~~~~l~~~~~~W~p~Y~~hkl~~GLvd~y~ 247 (494)
.+..|=..|.++. .++++.++.++.-++.|.+.-... ..||+....+.. .+.. =...|...-++.|+.. +.
T Consensus 23 q~R~~~~fa~a~~-~g~~~~l~~A~~~~~fl~~~~~D~~~Gg~~~~~~~~~--~~~~----~~~~Y~~af~l~ala~-~~ 94 (346)
T PF07221_consen 23 QARQLYTFARAYR-LGRPEYLELAEHGFDFLRKHFRDPEYGGWYRSLDDGG--PLDP----QKDLYDQAFALLALAE-AR 94 (346)
T ss_dssp HHHHHHHHHHHHH-TTSHHHHHHHHHHHHHHHHTTBTTTTSSBSSEEETTE--EEE------EEHHHHHHHHHHHHH-HH
T ss_pred eHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHhcccCCCCCEEEEeCCCC--CCcc----ccchHHHHHHHHHHHH-HH
Confidence 4777888888888 889999999999999998876422 356765542211 0100 1246777777888877 78
Q ss_pred HcCChhHHHHHHHHHHHHHHhhcccccccchhhhhhhhcccccchHHHHHHHHHhcCChhHHHHHhhhcccccchhhhhc
Q 011051 248 FADNTQALKMTKWMVEYFYNRVQNVITKYSVERHWNSLNEETGGMNDVLYRLYTITQDPKHLLLAHLFDKPCFLGLLAVQ 327 (494)
Q Consensus 248 ~tG~~kaL~ia~r~aD~~~~~~~~~~~k~~~~~~~~~l~~e~GGm~eaL~~LY~iTGd~ryL~lA~~F~~~~~~~~la~~ 327 (494)
+||++++++.+.+..+.+.+.+.. .+.||..+ + +.
T Consensus 95 ~tg~~~~~~~A~~~~~~l~~~~~d---------------~~~g~~~~--------~-----------~~----------- 129 (346)
T PF07221_consen 95 ATGDPEALELAEQTLEFLERRFWD---------------PEGGGYRE--------S-----------FD----------- 129 (346)
T ss_dssp CTT-TTHHHHHHHHHHHHHHHTEE---------------TTTTEE----------E-----------ET-----------
T ss_pred HhCChhHHHHHHHHHHHHHHHhcc---------------cccCccee--------c-----------cC-----------
Confidence 999999999999999999887643 11122110 0 00
Q ss_pred CCCCCCCcccchHHHHHHHHHHHHHhCChhHHHHHHHHHHHHhhcCceecccCCCCCCCCCCCcc-cccCCCC--c-ccc
Q 011051 328 ADDISGFHANTHIPVVIGSQMRYEVTGDPLYKVTGTFFMDIVNASHGYATGGTSAGEFWSDPKRL-ASTLGTE--N-EES 403 (494)
Q Consensus 328 ~d~l~~~HAnt~ip~~~G~a~~y~~TGD~~yl~a~~~~w~~v~~~~~y~TGG~g~~E~f~~~~~L-~~~l~~~--~-~ET 403 (494)
.+..+....|.|+-++.++..+|++|+|++|++.++.+.+.+.++..-...|. ..|+|..+-.. ++. ... . .--
T Consensus 130 ~~~~~~r~~n~~mhl~eA~l~l~~~~~~~~~~~~a~~l~~~~~~~f~~~~~g~-~~E~f~~dw~~~~~~-~~~d~~~~~~ 207 (346)
T PF07221_consen 130 PDWSPPRGQNPHMHLLEAFLALYEATGDPRYLDRAEELLDLFLDRFADPESGA-LPEFFDRDWNPLPDG-SGDDTFRGRI 207 (346)
T ss_dssp TTSSCBEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHCCTTE-ETSEEETTSEBETTT-TTTHSTTTSS
T ss_pred CccccCCCCChhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhccCe-eeeeecccccccccc-ccccccccCc
Confidence 00000012577777888889999999999999999999999996555444443 36777664321 110 000 0 001
Q ss_pred chhhHHHHHHHHHh-----ccCCCCchHHHHHHHHhhhhhccCCCCCCCeEEEecCC
Q 011051 404 CTTYNMLKVSRHLF-----RWTKEMVYADYYERALTNGVLSIQRGTEPGVMIYMLPL 455 (494)
Q Consensus 404 Cas~n~lkl~~~L~-----~~tgd~~YaD~~Er~LyN~iLa~~~~~d~g~~~Y~~pL 455 (494)
+..=-.+.+++-|+ ...+++.+.+..++.+--++--+.++ ++|.++|..+.
T Consensus 208 ~~pGH~~E~~wll~~~~~~~~~~~~~~~~~a~~l~~~~~~~G~d~-~~gG~~~~~d~ 263 (346)
T PF07221_consen 208 VEPGHDFEWAWLLLEAARLTGRGDPDWLERARRLFDFALEHGWDR-EGGGLFYSVDR 263 (346)
T ss_dssp B-HHHHHHHHHHHHHHHHHCHCT-HTHHHHHHHHHHHHHHHHBST-TTSSB-SEEET
T ss_pred cCCchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHheEec-CCCeEEEEEeC
Confidence 22222223444443 34467778766655555555557887 77767777655
No 15
>cd04434 LanC_like LanC-like proteins. LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans), in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. A related domain is also present in LanM and other pro- and eukaryotic proteins of unknown function.
Probab=97.04 E-value=0.053 Score=54.84 Aligned_cols=224 Identities=15% Similarity=0.068 Sum_probs=135.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHHHHhhh----CCCcccccCCchhHhhhhhcCCCCcccchHHHHHHHHHHHHHHc
Q 011051 174 SASAHMWASTHNVTLKEKMTAVVSALSECQNK----MGSGYLSAFPSEQFDRFEALKPVWAPYYTIHKILAGLLDQYTFA 249 (494)
Q Consensus 174 sA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~----~~dGYL~~~p~~~~~~l~~~~~~W~p~Y~~hkl~~GLvd~y~~t 249 (494)
-++..++..++|+++.+.+.++++.+.+.-.. ...++++.. .=++..|+..|+.+
T Consensus 57 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~G~---------------------aG~~~~ll~~~~~~ 115 (343)
T cd04434 57 YALAALSKGLGDQELLKELLELLLLLVELILEDLKDLNYDLLSGL---------------------AGLLLALLLLYKTF 115 (343)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhcccCCCCcceeech---------------------HHHHHHHHHHHHhc
Confidence 33445555789999999999998887654220 011222211 12556677888899
Q ss_pred CChhHHHHHHHHHHHHHHhhcccccccc-----hhhhh-hhhcccccchHHHHHHHHHhcCChhHHHHHhhhccc---cc
Q 011051 250 DNTQALKMTKWMVEYFYNRVQNVITKYS-----VERHW-NSLNEETGGMNDVLYRLYTITQDPKHLLLAHLFDKP---CF 320 (494)
Q Consensus 250 G~~kaL~ia~r~aD~~~~~~~~~~~k~~-----~~~~~-~~l~~e~GGm~eaL~~LY~iTGd~ryL~lA~~F~~~---~~ 320 (494)
+++..++.+.+.++++.+...+...... ..... -.+.-+..|+--+|.++|+.|.++.+.++++..... .+
T Consensus 116 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~HG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (343)
T cd04434 116 GEEIFLELIRKILDYLLELGKNGDGKIRWPMYFPEGRVNLGLAHGLAGILLALLLLYKKTVDKSLEALIKALLKYERRLQ 195 (343)
T ss_pred CCcCHHHHHHHHHHHHHHhhhhccCCCceeeeccCCccccchhhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHcc
Confidence 9999999999999999886543111100 00000 001112337778999999999888888877655321 11
Q ss_pred ------chh-hhhcCCCCCCCcccchHHHHHHHHHHHHHhCChhHHHHHHHHHHHHhhcCceecccCCCCCCCCCCCccc
Q 011051 321 ------LGL-LAVQADDISGFHANTHIPVVIGSQMRYEVTGDPLYKVTGTFFMDIVNASHGYATGGTSAGEFWSDPKRLA 393 (494)
Q Consensus 321 ------~~~-la~~~d~l~~~HAnt~ip~~~G~a~~y~~TGD~~yl~a~~~~w~~v~~~~~y~TGG~g~~E~f~~~~~L~ 393 (494)
+.+ ............++-..-+.....+.++.++|+.+.+.++...+.+.++....
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 258 (343)
T cd04434 196 DDSGGFWWPSRSNGGNRFLVAWCHGAPGILLALLLAYKALGDDKYDEAAEKALELAWKRGLLE----------------- 258 (343)
T ss_pred CCCCCCCCCCCCCCCccccceecCCChhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhhhcc-----------------
Confidence 111 00011111111122233345666788999999999999988887766432110
Q ss_pred ccCCCCccccchhhHHHHHHHHHhccCCCCchHHHHHHHHhhhhhc
Q 011051 394 STLGTENEESCTTYNMLKVSRHLFRWTKEMVYADYYERALTNGVLS 439 (494)
Q Consensus 394 ~~l~~~~~ETCas~n~lkl~~~L~~~tgd~~YaD~~Er~LyN~iLa 439 (494)
....+=.|...+.+....++...+++.+|.+..++.. +.++.
T Consensus 259 ---~~~~~lChG~~G~~~~ll~l~~~~~~~~~~~~a~~~~-~~~~~ 300 (343)
T cd04434 259 ---LKNPGLCHGIAGNLLILLLLYKLTGDLKFLARALALA-LLLIS 300 (343)
T ss_pred ---CCCCCcCcCccchHHHHHHHHHHhCCHHHHHHHHHHH-HHHHH
Confidence 0123445667888888899999999999888775554 45443
No 16
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=97.01 E-value=0.036 Score=64.17 Aligned_cols=215 Identities=13% Similarity=0.101 Sum_probs=130.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHHHHhhhC-CCcccccCCchhHhhhhhcCCCCcccchHHHHHHHHHHHHHHcCChhH
Q 011051 176 SAHMWASTHNVTLKEKMTAVVSALSECQNKM-GSGYLSAFPSEQFDRFEALKPVWAPYYTIHKILAGLLDQYTFADNTQA 254 (494)
Q Consensus 176 ~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~-~dGYL~~~p~~~~~~l~~~~~~W~p~Y~~hkl~~GLvd~y~~tG~~ka 254 (494)
+..++..++|+.+++.+.++++.+.+..... ..+++++. .=++.+|+..|+.+++++.
T Consensus 550 L~~l~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~D~~~G~---------------------aGii~~Ll~l~~~~~~~~~ 608 (825)
T cd04792 550 LTHLGKLLKDDRLLNLAKEILDLIDELIEKDEKLDFISGA---------------------AGLILVLLSLYELFLSERF 608 (825)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhhccccCCCEeeec---------------------HHHHHHHHHHHhccCChHH
Confidence 3455566899999999999999876654310 11222221 1145667788999999999
Q ss_pred HHHHHHHHHHHHHhhcccccccc-hhh-hhhhhcccccchHHHHHHHHHhcCChhHHHHHhhhccc--ccchhh-----h
Q 011051 255 LKMTKWMVEYFYNRVQNVITKYS-VER-HWNSLNEETGGMNDVLYRLYTITQDPKHLLLAHLFDKP--CFLGLL-----A 325 (494)
Q Consensus 255 L~ia~r~aD~~~~~~~~~~~k~~-~~~-~~~~l~~e~GGm~eaL~~LY~iTGd~ryL~lA~~F~~~--~~~~~l-----a 325 (494)
++++.+.++++.+.......... .+. .-..+..+..|+..+|.++|+.|+|++|++.|+...+. ..+.+. .
T Consensus 609 l~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~G~aHG~sGi~~aL~~l~~~~~d~~~~~~a~~~l~~~~~~~~~~~~~w~~ 688 (825)
T cd04792 609 LDLALKCGDHLLENASNEDGGIGPAEQPNLTGFAHGASGIAWALLRLYKVTGDSRYLKLAHKALKYERRLFSEEGWNWPR 688 (825)
T ss_pred HHHHHHHHHHHHHhhhhccCCcccccccccccccccHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhcCHhhcCCCC
Confidence 99999999998764322100000 000 00011223337778999999999999999999776431 111110 0
Q ss_pred hcCCC--CCCCcccchHHHHHHHHHHHHH--hCChhHHHHHHHHHHHHhhcCceecccCCCCCCCCCCCcccccCCCCcc
Q 011051 326 VQADD--ISGFHANTHIPVVIGSQMRYEV--TGDPLYKVTGTFFMDIVNASHGYATGGTSAGEFWSDPKRLASTLGTENE 401 (494)
Q Consensus 326 ~~~d~--l~~~HAnt~ip~~~G~a~~y~~--TGD~~yl~a~~~~w~~v~~~~~y~TGG~g~~E~f~~~~~L~~~l~~~~~ 401 (494)
..... ....|. ..-+..+...+++. .+|+.+.+.++..-+.+... | +.. ..+
T Consensus 689 ~~~~~~~~~WChG--~~GI~lal~~~~~~~~~~d~~~~~~i~~~~~~~~~~------~------~~~----------~~s 744 (825)
T cd04792 689 KDGNSFSAAWCHG--APGILLARLELLKFNDLDDEELKEEIEIALKTTLKE------G------FGN----------NHS 744 (825)
T ss_pred cCcCCCCCcccCC--cHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHh------c------CCC----------CCe
Confidence 00111 112233 22234555577787 68888888887776665532 1 111 122
Q ss_pred ccchhhHHHHHHHHHhccCCCCchHHHHHHHHhh
Q 011051 402 ESCTTYNMLKVSRHLFRWTKEMVYADYYERALTN 435 (494)
Q Consensus 402 ETCas~n~lkl~~~L~~~tgd~~YaD~~Er~LyN 435 (494)
=.|...+.+.+...+.+.+++.+|.+.+++.+-+
T Consensus 745 lCHG~~Gil~~ll~~~~~~~~~~~~~~a~~~~~~ 778 (825)
T cd04792 745 LCHGDLGNLEILLYAAKAFGDEKLQELANSLAIK 778 (825)
T ss_pred ecCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3566677787888888899999998888766443
No 17
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=96.98 E-value=0.0058 Score=58.78 Aligned_cols=131 Identities=21% Similarity=0.129 Sum_probs=85.7
Q ss_pred HHHHHHHHhcCChhHHHHHhhhcccccchhhhhc------CC--------C-CCCCc-ccchHHHHHHHHHHHHHhCChh
Q 011051 294 DVLYRLYTITQDPKHLLLAHLFDKPCFLGLLAVQ------AD--------D-ISGFH-ANTHIPVVIGSQMRYEVTGDPL 357 (494)
Q Consensus 294 eaL~~LY~iTGd~ryL~lA~~F~~~~~~~~la~~------~d--------~-l~~~H-Ant~ip~~~G~a~~y~~TGD~~ 357 (494)
.+|+|.|++|||++||+.|++..+.-. -|..+| .+ + .+..| =|.+|..++|+-+.+..+++++
T Consensus 37 s~l~RAy~~t~d~~Yl~aA~~al~~f~-~~~~~GG~~~~~~~~~~wyeEYp~~p~s~VLNGfiysL~GLyd~~~~~~~~~ 115 (189)
T PF06662_consen 37 SVLARAYQLTGDEKYLDAAKKALNSFK-VPVEEGGVLATFKNKYPWYEEYPTTPPSYVLNGFIYSLIGLYDYYRLTGDEE 115 (189)
T ss_pred HHHHHHHHhHCCHHHHHHHHHHHHHhc-ChHhhCCeeEEecCCcEeEeecCCCCCCEEeehHHHHHHHHHHHHHhcCCHH
Confidence 599999999999999999988643211 111111 01 0 11212 3668999999999999999998
Q ss_pred HHHHHHHHHHHHhhc-CceecccCCC--CCCCCCCCcccccCCCCccccchhhHHHHHHHHHhccCCCCchHHHHHH
Q 011051 358 YKVTGTFFMDIVNAS-HGYATGGTSA--GEFWSDPKRLASTLGTENEESCTTYNMLKVSRHLFRWTKEMVYADYYER 431 (494)
Q Consensus 358 yl~a~~~~w~~v~~~-~~y~TGG~g~--~E~f~~~~~L~~~l~~~~~ETCas~n~lkl~~~L~~~tgd~~YaD~~Er 431 (494)
..+.-+...+.+.+. ..|-||+.|. --|+.. ...|+.-+-.|-. -.+.....|..+|+|+.+.+++||
T Consensus 116 A~~lf~~Gl~sLk~~Lp~yD~G~wS~Ydl~h~~~-~~~~~~a~~~YH~-----lHi~qL~~L~~it~d~~f~~~a~r 186 (189)
T PF06662_consen 116 AKELFDKGLKSLKKMLPLYDTGSWSRYDLRHFTL-GNAPNIARWDYHR-----LHIQQLKWLYSITGDPIFKEYAER 186 (189)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCCCchhhcccccc-ccCcCcCcchHHH-----HHHHHHHHHHHhcCCHHHHHHHHH
Confidence 888887777776544 5788888874 233332 1122210011211 134456678999999999999987
No 18
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=96.82 E-value=0.082 Score=54.90 Aligned_cols=236 Identities=17% Similarity=0.124 Sum_probs=138.0
Q ss_pred hhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhCCCcccccCCchhHhhhhhcCCCCcccchHHHHHHH--HHHHH
Q 011051 169 VGHYLSASAHMWASTHNVTLKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFEALKPVWAPYYTIHKILAG--LLDQY 246 (494)
Q Consensus 169 ~G~~LsA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~~~p~~~~~~l~~~~~~W~p~Y~~hkl~~G--Lvd~y 246 (494)
.|=.+.+++.+|-.|+|++..+.+..++|.... .+| + |.|++.+|..| |+..|
T Consensus 38 ~GV~lyGv~~~~eAT~d~~yl~~l~~~~d~~i~-----~~g----~----------------~~~~id~i~~g~~L~~L~ 92 (357)
T COG4225 38 QGVFLYGVARAYEATGDAEYLDYLKTWFDEQID-----EGG----L----------------PPRNIDHIAAGLTLLPLY 92 (357)
T ss_pred ccchHHHHHHHHHHcCcHHHHHHHHHHHHhhhc-----cCC----C----------------CccchhhhccCceeeehh
Confidence 477899999999999999999999999886531 344 2 33555555555 56889
Q ss_pred HHcCChhHHHHHHHHHHHHHHhhccccc-----ccchhhhhhh-hcccccchHHHHHHHHHhcCChhHHHHHhh-h-cc-
Q 011051 247 TFADNTQALKMTKWMVEYFYNRVQNVIT-----KYSVERHWNS-LNEETGGMNDVLYRLYTITQDPKHLLLAHL-F-DK- 317 (494)
Q Consensus 247 ~~tG~~kaL~ia~r~aD~~~~~~~~~~~-----k~~~~~~~~~-l~~e~GGm~eaL~~LY~iTGd~ryL~lA~~-F-~~- 317 (494)
+.||+++.|+.++++++|+.+......+ ..-++|+|-- |- ++| .-++++=+++|+++|++=+-+ | .+
T Consensus 93 e~T~~~~Yl~~a~~~a~~l~~~~Rt~eG~f~H~~~~p~Q~W~DtL~--Ma~--~F~ak~g~~~~~~e~~d~~~~QF~~~~ 168 (357)
T COG4225 93 EQTGDPRYLEAAIKLASWLVHEPRTKEGGFQHKVKYPHQMWLDTLY--MAG--LFLAKYGQVTGRPEYFDEALYQFSLHE 168 (357)
T ss_pred hhhCCHHHHHHHHHHHHHHhhCcccCCCccccccCchhHhhhcchh--hhh--HHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999875311111 0123455531 10 011 267889999999999998733 3 21
Q ss_pred cccchhhh----hc---------CCCCCC---CcccchHHHHHHHHHHHHHhCC-----hhHHHHHHHHHHHHhhcCcee
Q 011051 318 PCFLGLLA----VQ---------ADDISG---FHANTHIPVVIGSQMRYEVTGD-----PLYKVTGTFFMDIVNASHGYA 376 (494)
Q Consensus 318 ~~~~~~la----~~---------~d~l~~---~HAnt~ip~~~G~a~~y~~TGD-----~~yl~a~~~~w~~v~~~~~y~ 376 (494)
+...+|.. .+ .+..+| +.|-..=-..+.+++..++-.+ ..+.+.++...+.|.+.+. .
T Consensus 169 ~~l~Dp~TGL~YH~wd~~~~~~w~~~~sG~~~fWaRg~gW~~mal~d~le~lp~~~~~r~~l~~~l~d~v~al~r~Qd-e 247 (357)
T COG4225 169 KYLRDPETGLYYHGWDEDGTMPWANNESGEPAFWARGNGWYAMALADLLELLPEDHPDRRELLNVLRDLVDALIRYQD-E 247 (357)
T ss_pred HHccCCCcCceEEeeccCCCCccccccCCCceeeecccchHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHhhc-c
Confidence 11122210 01 111111 1111111134666677665433 2567777777887777655 4
Q ss_pred cccCCCCCCCCCCCcccccCCCCccccchhhHHHH-HHHHHhccCCCCchHHHHHHHHhhhhhccCCC
Q 011051 377 TGGTSAGEFWSDPKRLASTLGTENEESCTTYNMLK-VSRHLFRWTKEMVYADYYERALTNGVLSIQRG 443 (494)
Q Consensus 377 TGG~g~~E~f~~~~~L~~~l~~~~~ETCas~n~lk-l~~~L~~~tgd~~YaD~~Er~LyN~iLa~~~~ 443 (494)
.|-. .. -|-+..+..+.||-+|...+. +.+-+-+=--+++|+-+.|+++ -+|+..+..
T Consensus 248 ~GlW------~t--iLDd~~~~sy~EsSaSa~faYallkgi~~G~l~~~~~~~~~kA~-~aLl~~i~~ 306 (357)
T COG4225 248 SGLW------HT--ILDDGRPGSYLESSASAGFAYALLKGINLGILDPEYAPVAEKAL-DALLGHIDE 306 (357)
T ss_pred ccch------hh--hhccCCCCCchhhhHHHHHHHHHHHHHhcCCCCchhhHHHHHHH-HHHHhhccc
Confidence 4433 21 111112356888887744332 2222222223677778888763 566666654
No 19
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.018 Score=64.48 Aligned_cols=136 Identities=15% Similarity=0.085 Sum_probs=95.0
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhCCCcccc-cCCchhHhhhhhcCCCCc--ccchHHHHHHHHHHHH
Q 011051 170 GHYLSASAHMWASTHNVTLKEKMTAVVSALSECQNKMGSGYLS-AFPSEQFDRFEALKPVWA--PYYTIHKILAGLLDQY 246 (494)
Q Consensus 170 G~~LsA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~-~~p~~~~~~l~~~~~~W~--p~Y~~hkl~~GLvd~y 246 (494)
|-.++|.|.++..++|++..+.++...+.|.+.+. .| .|. .+- +....... +-|-. ++.|+++.|
T Consensus 414 glmi~aLa~a~~~~~d~~~l~~A~~~~~fi~~~l~--~~-rl~~~~~-------~G~a~~~g~leDYA~--~i~gll~ly 481 (667)
T COG1331 414 GLMIAALAEAGRVLGDPEYLEAAERAADFILDNLY--VD-RLLRRYR-------GGEAAVAGLLEDYAF--LILGLLALY 481 (667)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhc--cc-chheeee-------cCcccccccchhHHH--HHHHHHHHH
Confidence 89999999999999999999999999999998888 44 221 110 00111122 34544 889999999
Q ss_pred HHcCChhHHHHHHHHHHHHHHhhccccccc--chhhhhh-------hhcccc----cchHHHHHHHHHhcCChhHHHHHh
Q 011051 247 TFADNTQALKMTKWMVEYFYNRVQNVITKY--SVERHWN-------SLNEET----GGMNDVLYRLYTITQDPKHLLLAH 313 (494)
Q Consensus 247 ~~tG~~kaL~ia~r~aD~~~~~~~~~~~k~--~~~~~~~-------~l~~e~----GGm~eaL~~LY~iTGd~ryL~lA~ 313 (494)
++|++.+.|+.|++++|=+...|...-+.. +...... ....+. +-+..+|.+|-.+|||.+|++.|.
T Consensus 482 e~t~d~~yL~~A~~L~~~~i~~f~d~~gGf~~t~~~~~~l~ir~~~~~D~a~~S~na~~~~~L~~Ls~ltg~~~y~e~A~ 561 (667)
T COG1331 482 EATGDLAYLEKAIELADEAIADFWDDEGGFYDTPSDSEDLLIRPKEPTDGATPSGNAVAAQALLRLSLLTGDARYLEAAE 561 (667)
T ss_pred HhhCcHHHHHHHHHHHHHHHHHhcCCCCCcccCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHHHhhcCchhHHHHHH
Confidence 999999999999999999888775421110 0000000 011111 123369999999999999999998
Q ss_pred hhcc
Q 011051 314 LFDK 317 (494)
Q Consensus 314 ~F~~ 317 (494)
...+
T Consensus 562 ~~L~ 565 (667)
T COG1331 562 DILQ 565 (667)
T ss_pred HHHH
Confidence 7754
No 20
>cd04434 LanC_like LanC-like proteins. LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans), in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. A related domain is also present in LanM and other pro- and eukaryotic proteins of unknown function.
Probab=96.69 E-value=0.25 Score=49.89 Aligned_cols=228 Identities=11% Similarity=0.042 Sum_probs=133.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHHHHhhhCC---CcccccCCchhHhhhhhcCCCCcccchHHHHHHHHHHHHHHcCCh
Q 011051 176 SAHMWASTHNVTLKEKMTAVVSALSECQNKMG---SGYLSAFPSEQFDRFEALKPVWAPYYTIHKILAGLLDQYTFADNT 252 (494)
Q Consensus 176 ~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~~---dGYL~~~p~~~~~~l~~~~~~W~p~Y~~hkl~~GLvd~y~~tG~~ 252 (494)
.+..+..++|+..++.++..++.+...-...+ .|+++. ..=+.-.+...|+.++++
T Consensus 11 l~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~G---------------------~~Gi~~~l~~l~~~~~~~ 69 (343)
T cd04434 11 LLELYRVTPDEKYQDLAHKALEYIVKSLSSLPDTDISLFSG---------------------LAGIAYALAALSKGLGDQ 69 (343)
T ss_pred HHHHHhccCCccHHHHHHHHHHHHHHHHHhCCCCCeeeecc---------------------hHHHHHHHHHHHHHcCCH
Confidence 34556678899999999998888776544211 122221 112445566788899999
Q ss_pred hHHHHHHHHHHHHHHhhcccccccchhhhhhhhcccccchHHHHHHHHHhcCChhHHHHHhhhcccccc----------h
Q 011051 253 QALKMTKWMVEYFYNRVQNVITKYSVERHWNSLNEETGGMNDVLYRLYTITQDPKHLLLAHLFDKPCFL----------G 322 (494)
Q Consensus 253 kaL~ia~r~aD~~~~~~~~~~~k~~~~~~~~~l~~e~GGm~eaL~~LY~iTGd~ryL~lA~~F~~~~~~----------~ 322 (494)
+.++.+.+.++.+.+..... .+. .... +..+..|+--+|..+|+.|+++.+++++..+.+.-.. +
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~-~~~---~~~d-~~~G~aG~~~~ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 144 (343)
T cd04434 70 ELLKELLELLLLLVELILED-LKD---LNYD-LLSGLAGLLLALLLLYKTFGEEIFLELIRKILDYLLELGKNGDGKIRW 144 (343)
T ss_pred HHHHHHHHHHHHhhhhhhcc-cCC---CCcc-eeechHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHhhhhccCCCce
Confidence 99999999998877653210 000 0001 1123346667999999999999999998776432110 0
Q ss_pred hhhhcCCC--CCCCcccchHHHHHHHHHHHHHhCChhHHHHHHHHHHHHhhcCceecccCCCCCCCCCCCcccccCCCCc
Q 011051 323 LLAVQADD--ISGFHANTHIPVVIGSQMRYEVTGDPLYKVTGTFFMDIVNASHGYATGGTSAGEFWSDPKRLASTLGTEN 400 (494)
Q Consensus 323 ~la~~~d~--l~~~HAnt~ip~~~G~a~~y~~TGD~~yl~a~~~~w~~v~~~~~y~TGG~g~~E~f~~~~~L~~~l~~~~ 400 (494)
+.....+. ..-.|. ..-++..+..+++.+.|+.+.++++...+...... ...+++ |.+...- .......
T Consensus 145 ~~~~~~~~~~~g~~HG--~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~-~~~~~~~ 215 (343)
T cd04434 145 PMYFPEGRVNLGLAHG--LAGILLALLLLYKKTVDKSLEALIKALLKYERRLQ-DDSGGF-----WWPSRSN-GGNRFLV 215 (343)
T ss_pred eeeccCCccccchhhh--hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHcc-CCCCCC-----CCCCCCC-CCccccc
Confidence 00000011 111233 23345566688888889999998888877654322 112221 1110000 0001112
Q ss_pred cccchhhHHHHHHHHHhccCCCCchHHHHHHHHhhhhh
Q 011051 401 EESCTTYNMLKVSRHLFRWTKEMVYADYYERALTNGVL 438 (494)
Q Consensus 401 ~ETCas~n~lkl~~~L~~~tgd~~YaD~~Er~LyN~iL 438 (494)
.=...+.+.+....++.+.+++.++.+..++.+-+.+-
T Consensus 216 ~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (343)
T cd04434 216 AWCHGAPGILLALLLAYKALGDDKYDEAAEKALELAWK 253 (343)
T ss_pred eecCCChhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 23334577777777889999999999999888765543
No 21
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=96.59 E-value=0.14 Score=59.33 Aligned_cols=225 Identities=15% Similarity=0.164 Sum_probs=128.1
Q ss_pred hHHHHHHHHH----HHhcCChhHHHHHHHHHHHHHHHhhhC-----CCcccccCCchhHhhhhhcCCCCcccchHHHHHH
Q 011051 170 GHYLSASAHM----WASTHNVTLKEKMTAVVSALSECQNKM-----GSGYLSAFPSEQFDRFEALKPVWAPYYTIHKILA 240 (494)
Q Consensus 170 G~~LsA~a~~----~a~t~D~~L~~k~d~~Vd~l~~~Q~~~-----~dGYL~~~p~~~~~~l~~~~~~W~p~Y~~hkl~~ 240 (494)
+.=+.|++.+ +..++|+..++.+.++++.+.+.-+.. +.|.++.. +=+.-
T Consensus 490 Y~G~aGIal~l~~l~~~t~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~gl~~G~---------------------aGi~~ 548 (825)
T cd04792 490 YDGSAGIALFLAYLGQLTGDERYTRLARKILDSLVKSLSELKTDDTGIGAFSGL---------------------GGILY 548 (825)
T ss_pred cCChHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHhcccccccCceeEech---------------------hHHHH
Confidence 3334455544 445789988888888888776543210 11222211 11344
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHHHHhhcccccccchhhhhhhhcccccchHHHHHHHHHhcCChhHHHHHhhhccccc
Q 011051 241 GLLDQYTFADNTQALKMTKWMVEYFYNRVQNVITKYSVERHWNSLNEETGGMNDVLYRLYTITQDPKHLLLAHLFDKPCF 320 (494)
Q Consensus 241 GLvd~y~~tG~~kaL~ia~r~aD~~~~~~~~~~~k~~~~~~~~~l~~e~GGm~eaL~~LY~iTGd~ryL~lA~~F~~~~~ 320 (494)
.+...|+.+++++.++.+.+.++.+.+...+ . ..... ..+..|.--+|..+|+.|++++++++|....+.-+
T Consensus 549 ~L~~l~~~~~~~~~~~~a~~~~~~l~~~~~~---~----~~~D~-~~G~aGii~~Ll~l~~~~~~~~~l~~a~~~~~~l~ 620 (825)
T cd04792 549 ALTHLGKLLKDDRLLNLAKEILDLIDELIEK---D----EKLDF-ISGAAGLILVLLSLYELFLSERFLDLALKCGDHLL 620 (825)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhhcc---c----cCCCE-eeecHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence 5667788999999999999998887654211 0 00011 12344666789999999999999999987654321
Q ss_pred chhhhhc-------CCCC-CCCcccchHHHHHHHHHHHHHhCChhHHHHHHHHHHHHhhcCceecccCCCCCCCCCCCcc
Q 011051 321 LGLLAVQ-------ADDI-SGFHANTHIPVVIGSQMRYEVTGDPLYKVTGTFFMDIVNASHGYATGGTSAGEFWSDPKRL 392 (494)
Q Consensus 321 ~~~la~~-------~d~l-~~~HAnt~ip~~~G~a~~y~~TGD~~yl~a~~~~w~~v~~~~~y~TGG~g~~E~f~~~~~L 392 (494)
-...... .... .-.|...- ++..+..+|+.++|+++++++..+++..... +..++. .|..+..
T Consensus 621 ~~~~~~~~~~~~~~~~~~~G~aHG~sG--i~~aL~~l~~~~~d~~~~~~a~~~l~~~~~~--~~~~~~----~w~~~~~- 691 (825)
T cd04792 621 ENASNEDGGIGPAEQPNLTGFAHGASG--IAWALLRLYKVTGDSRYLKLAHKALKYERRL--FSEEGW----NWPRKDG- 691 (825)
T ss_pred HhhhhccCCcccccccccccccccHHH--HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHh--cCHhhc----CCCCcCc-
Confidence 1000000 0011 12244222 4455668899999999999999998854321 221111 1211110
Q ss_pred cccCCCCccccchh-hHHHHHHHHHhcc--CCCCchHHHHHHHHhhh
Q 011051 393 ASTLGTENEESCTT-YNMLKVSRHLFRW--TKEMVYADYYERALTNG 436 (494)
Q Consensus 393 ~~~l~~~~~ETCas-~n~lkl~~~L~~~--tgd~~YaD~~Er~LyN~ 436 (494)
.....--|-. .+.+..--.+.+. ..+..+.+.+++++-..
T Consensus 692 ----~~~~~~WChG~~GI~lal~~~~~~~~~~d~~~~~~i~~~~~~~ 734 (825)
T cd04792 692 ----NSFSAAWCHGAPGILLARLELLKFNDLDDEELKEEIEIALKTT 734 (825)
T ss_pred ----CCCCCcccCCcHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 0112234544 4555444456666 57888888888876443
No 22
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=96.58 E-value=0.025 Score=58.48 Aligned_cols=190 Identities=15% Similarity=0.103 Sum_probs=102.5
Q ss_pred cchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHhhcccccccchhhhhhhhcccccchHHHHHHHHHhcCChhHHHH
Q 011051 232 YYTIHKILAGLLDQYTFADNTQALKMTKWMVEYFYNRVQNVITKYSVERHWNSLNEETGGMNDVLYRLYTITQDPKHLLL 311 (494)
Q Consensus 232 ~Y~~hkl~~GLvd~y~~tG~~kaL~ia~r~aD~~~~~~~~~~~k~~~~~~~~~l~~e~GGm~eaL~~LY~iTGd~ryL~l 311 (494)
.|+-|-++.|+..+|++||+++.++.+++.++.+....++. ...+.+ ..-..+..+|++|||++|++.
T Consensus 24 ~W~~G~~~~gl~~~~~~tgd~~~~~~a~~~~~~~~~~~~~~---~~~d~~---------~~g~~~~~~y~~t~d~~y~~~ 91 (336)
T PF07470_consen 24 DWTNGVFWYGLLEAYEYTGDERYLDYAERWADRFIEEDGSD---YNLDDH---------DIGFLLLDLYERTGDEKYKDA 91 (336)
T ss_dssp SHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHTT---TSCCGT---------THHHHHHHHHHHH-THHHHHH
T ss_pred CcChhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhccCCc---cCCchh---------hhHHHHHHHHHHhCCHHHHHH
Confidence 57888899999999999999999999999998877654330 000000 011366789999999999999
Q ss_pred Hhhhcccccchhh--hhcC----CCCCCCcccchHH-HHHHHHHHHHHhCChhHHHHHHHHHHHHhhcCce--ecccCCC
Q 011051 312 AHLFDKPCFLGLL--AVQA----DDISGFHANTHIP-VVIGSQMRYEVTGDPLYKVTGTFFMDIVNASHGY--ATGGTSA 382 (494)
Q Consensus 312 A~~F~~~~~~~~l--a~~~----d~l~~~HAnt~ip-~~~G~a~~y~~TGD~~yl~a~~~~w~~v~~~~~y--~TGG~g~ 382 (494)
+....+..+..+. ..+. ..-+..--...+. ..-=++..++.|||++|++.+.+-++...+. .| .||=.
T Consensus 92 ~~~~a~~~l~~~~~~~~G~~~~~~~~~~~~wiD~~~M~~p~l~~~~~~tgd~~~~~~a~~q~~~~~~~-~~d~~tGl~-- 168 (336)
T PF07470_consen 92 AIQAADWLLARRPRTSDGGFWHNRPYPNQVWIDGMYMNLPFLAWAGKLTGDPKYLDEAVRQFRLTRKY-LYDPETGLY-- 168 (336)
T ss_dssp HHHHHHHHHHTSCBECTGCBECTTTSTTEEETTHHHHHHHHHHHHHHHHTGHHHHHHHHHHHHHHHHH-HB-TTTSSB--
T ss_pred HHHHHHHHHHhCCCCCCCccccCCCCCCceeeccccccHHHHHHHHHHHCCcHHHHHHHHHHHHHHHh-ccCCCCCce--
Confidence 9776542111100 0010 0000000011232 2223345689999999999999877776654 22 12211
Q ss_pred CCCCCCCCcccccCCCCccccc-------hhhHHHHHHHHHhc-cCCCCchHHHHHHHHhhhhhccCCC
Q 011051 383 GEFWSDPKRLASTLGTENEESC-------TTYNMLKVSRHLFR-WTKEMVYADYYERALTNGVLSIQRG 443 (494)
Q Consensus 383 ~E~f~~~~~L~~~l~~~~~ETC-------as~n~lkl~~~L~~-~tgd~~YaD~~Er~LyN~iLa~~~~ 443 (494)
+..... .. ....+.+| +.+++..+.+.|=. -+....+.+.+++.+ .++..-|+.
T Consensus 169 ---~h~~~~-~~--~~~~s~~~WsRG~gW~~~Gl~~~l~~lp~~~~~~~~~~~~~~~~~-~~l~~~q~~ 230 (336)
T PF07470_consen 169 ---YHGYTY-QG--YADWSDSFWSRGNGWAIYGLAEVLEYLPEDHPERDELLEIAKKLA-DALARYQDE 230 (336)
T ss_dssp ---ESEEET-TS--SSTTST--BHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH-HHHHTTSTT
T ss_pred ---eeccCC-CC--CcCcccccCcchhhHHHHHHHHHHHHhcchhhhHHHHHHHHHHHH-HHHHhcCCC
Confidence 000000 00 00001123 22444444444322 123467888888888 557777774
No 23
>PTZ00470 glycoside hydrolase family 47 protein; Provisional
Probab=96.56 E-value=0.028 Score=61.97 Aligned_cols=126 Identities=19% Similarity=0.217 Sum_probs=79.7
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhCCCcccccCCchhHhhhhhcCCCCcccchHHHHHHHHHHHHHHc
Q 011051 170 GHYLSASAHMWASTHNVTLKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFEALKPVWAPYYTIHKILAGLLDQYTFA 249 (494)
Q Consensus 170 G~~LsA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~~~p~~~~~~l~~~~~~W~p~Y~~hkl~~GLvd~y~~t 249 (494)
---++++.-++-.--.+++.+.++.+.+.|.-.|. .|+.++.|- +.-.++-||+.+|.+|
T Consensus 112 ~TlVDSLDTL~IMgl~~Ef~~a~~~V~~~l~f~~~--~~~~vsvFE------------------ttIR~LGGLLSAy~Ls 171 (522)
T PTZ00470 112 LTIIDSLDTLKIMGLKKEYKEGRDWVANNLKQSKD--TGLGVSVFE------------------TTIRVLGGLLSAYDLT 171 (522)
T ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCC--CCCeeeeee------------------eehhhHhHHHHHHHHc
Confidence 34456665555544444444444333333322233 456665441 1224789999999999
Q ss_pred CChhHHHHHHHHHHHHHHhhcccccccchh-----------hhh---hhhcccccchHHHHHHHHHhcCChhHHHHHhhh
Q 011051 250 DNTQALKMTKWMVEYFYNRVQNVITKYSVE-----------RHW---NSLNEETGGMNDVLYRLYTITQDPKHLLLAHLF 315 (494)
Q Consensus 250 G~~kaL~ia~r~aD~~~~~~~~~~~k~~~~-----------~~~---~~l~~e~GGm~eaL~~LY~iTGd~ryL~lA~~F 315 (494)
|++.+|+.|+.++|-+...|.. +...|.. ..| .....|.|.+..-+..|.++|||++|.+.|++.
T Consensus 172 ~d~~lL~kA~dLgd~Ll~AFdT-ptgiP~~~vnl~~g~~~~~~~~~~~~~lAe~gSl~LEF~~LS~lTGd~kY~~~a~~i 250 (522)
T PTZ00470 172 GDEMYLEKAREIADRLLPAFNE-DTGFPASEINLATGRKSYPGWAGGCSILSEVGTLQLEFNYLSEITGDPKYAEYVDKV 250 (522)
T ss_pred CCHHHHHHHHHHHHHHHHhhcC-CCCCCcceeecccCCCCCcccCCCccchhhhhhHHHHHHHHHHhhCCHHHHHHHHHH
Confidence 9999999999999999988843 1111111 011 111236677766688899999999999999887
Q ss_pred c
Q 011051 316 D 316 (494)
Q Consensus 316 ~ 316 (494)
.
T Consensus 251 ~ 251 (522)
T PTZ00470 251 M 251 (522)
T ss_pred H
Confidence 4
No 24
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=96.38 E-value=0.01 Score=61.39 Aligned_cols=124 Identities=16% Similarity=0.191 Sum_probs=74.9
Q ss_pred chHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHhhcccccccchhhhhhhhcccccchHHHHHHHHHhcCChhHHHHH
Q 011051 233 YTIHKILAGLLDQYTFADNTQALKMTKWMVEYFYNRVQNVITKYSVERHWNSLNEETGGMNDVLYRLYTITQDPKHLLLA 312 (494)
Q Consensus 233 Y~~hkl~~GLvd~y~~tG~~kaL~ia~r~aD~~~~~~~~~~~k~~~~~~~~~l~~e~GGm~eaL~~LY~iTGd~ryL~lA 312 (494)
|..|=.+.|...+|++|||++.|+.+++.+|+....=|. +...++. +. .|. .|.-||+.|||++||++|
T Consensus 36 we~GV~lyGv~~~~eAT~d~~yl~~l~~~~d~~i~~~g~--~~~~id~----i~---~g~--~L~~L~e~T~~~~Yl~~a 104 (357)
T COG4225 36 WEQGVFLYGVARAYEATGDAEYLDYLKTWFDEQIDEGGL--PPRNIDH----IA---AGL--TLLPLYEQTGDPRYLEAA 104 (357)
T ss_pred ccccchHHHHHHHHHHcCcHHHHHHHHHHHHhhhccCCC--Cccchhh----hc---cCc--eeeehhhhhCCHHHHHHH
Confidence 334446778889999999999999999999987765321 1111111 11 122 688899999999999999
Q ss_pred hhhcccccchhhhhcCCCCCCCcccc---hH---HHHHH---HHHHHHHhCChhHHHHHHHHHHHHh
Q 011051 313 HLFDKPCFLGLLAVQADDISGFHANT---HI---PVVIG---SQMRYEVTGDPLYKVTGTFFMDIVN 370 (494)
Q Consensus 313 ~~F~~~~~~~~la~~~d~l~~~HAnt---~i---p~~~G---~a~~y~~TGD~~yl~a~~~~w~~v~ 370 (494)
....+.-.-.| .-....+ .|-+. ++ -+++| ++++-+++|+++|.+-+...+....
T Consensus 105 ~~~a~~l~~~~-Rt~eG~f--~H~~~~p~Q~W~DtL~Ma~~F~ak~g~~~~~~e~~d~~~~QF~~~~ 168 (357)
T COG4225 105 IKLASWLVHEP-RTKEGGF--QHKVKYPHQMWLDTLYMAGLFLAKYGQVTGRPEYFDEALYQFSLHE 168 (357)
T ss_pred HHHHHHHhhCc-ccCCCcc--ccccCchhHhhhcchhhhhHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 88743221111 0000000 12221 01 02333 3467789999999987775444433
No 25
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=96.18 E-value=0.15 Score=52.87 Aligned_cols=190 Identities=16% Similarity=0.128 Sum_probs=113.7
Q ss_pred hhHHHHHHHHHHHhcCC-hhHHHHHHHHHHHHHHHhhhCCCcccccCCchhHhhhhhcCCCCcc----cchHH--HHHHH
Q 011051 169 VGHYLSASAHMWASTHN-VTLKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFEALKPVWAP----YYTIH--KILAG 241 (494)
Q Consensus 169 ~G~~LsA~a~~~a~t~D-~~L~~k~d~~Vd~l~~~Q~~~~dGYL~~~p~~~~~~l~~~~~~W~p----~Y~~h--kl~~G 241 (494)
..=++-++..++..+++ +.+.+.++++++.+.+.-+...+.+....|. .| .|.. -++-| =|+..
T Consensus 103 ~aG~l~~Ll~l~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~-~~--------~~~~~~~~G~aHG~aGI~~~ 173 (343)
T cd04794 103 RAGYLYALLFLNKKFGFKKIPSSLIKSICDAILESGRTGAAKYRAPCPL-MY--------EWHGKEYLGAAHGLAGILYI 173 (343)
T ss_pred HHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHhhhccCCCCCc-cc--------cccCceecchhhhHHHHHHH
Confidence 34467777777777773 4577788888887665422112222111111 11 1111 01111 25666
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHHHhhcc---cccccchhhhhhh--hcccccchHHHHHHHHHhcCChhHHHHHhhhc
Q 011051 242 LLDQYTFADNTQALKMTKWMVEYFYNRVQN---VITKYSVERHWNS--LNEETGGMNDVLYRLYTITQDPKHLLLAHLFD 316 (494)
Q Consensus 242 Lvd~y~~tG~~kaL~ia~r~aD~~~~~~~~---~~~k~~~~~~~~~--l~~e~GGm~eaL~~LY~iTGd~ryL~lA~~F~ 316 (494)
|+..+..+++++.++.+.+..+|..+...+ ++...+..+.... ...+..|+-..+.++|++++|++|++.++.-.
T Consensus 174 L~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~g~w~~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~ 253 (343)
T cd04794 174 LLQTPLFLLKPSLAPLIKRSLDYLLSLQFPSGNFPSSLGNRKRDRLVQWCHGAPGIVYLLAKAYLVFKEEQYLEAAIKCG 253 (343)
T ss_pred HHhhhhhcCCccHHHHHHHHHHHHHHhhccCCCCCCccCCCCCCccccccCCCchHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 888999999999999999999998876321 1111110000000 11233478889999999999999999987765
Q ss_pred ccccc-hhhhhcCCCCCCCcccchHHHHHHHHHHHHHhCChhHHHHHHHHHHHHhhc
Q 011051 317 KPCFL-GLLAVQADDISGFHANTHIPVVIGSQMRYEVTGDPLYKVTGTFFMDIVNAS 372 (494)
Q Consensus 317 ~~~~~-~~la~~~d~l~~~HAnt~ip~~~G~a~~y~~TGD~~yl~a~~~~w~~v~~~ 372 (494)
+..+. +.+ .....-.|-..- +..++.++|+.|+|+++++.|..+.+.+.++
T Consensus 254 ~~~~~~g~~---~~~~~lCHG~~G--~~~~lL~~~~~~~~~~~~~~a~~~~~~~~~~ 305 (343)
T cd04794 254 ELIWKRGLL---KKGPGLCHGIAG--NAYAFLLLYRLTGDLKYLYRACKFAEFLINY 305 (343)
T ss_pred HHHHHhCCc---cCCCccccCccc--hHHHHHHHHHHhCcHHHHHHHHHHHHHHhcc
Confidence 43210 110 011112354332 3566678999999999999999999998865
No 26
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms]
Probab=96.01 E-value=0.043 Score=62.84 Aligned_cols=119 Identities=15% Similarity=0.218 Sum_probs=87.3
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhC-CCcccccCCchhHhhhhhcCCCCcccchHHHHHHHHHHHHHH
Q 011051 170 GHYLSASAHMWASTHNVTLKEKMTAVVSALSECQNKM-GSGYLSAFPSEQFDRFEALKPVWAPYYTIHKILAGLLDQYTF 248 (494)
Q Consensus 170 G~~LsA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~-~dGYL~~~p~~~~~~l~~~~~~W~p~Y~~hkl~~GLvd~y~~ 248 (494)
+-++=|+...+..++|..|.+.+...|..|..+-++. .-+|+++- .-++.-|+..|+.
T Consensus 699 ~g~~yal~~I~~~~~~~~l~~~~~~~i~~le~~v~~~~~~d~i~Gl---------------------~g~i~~L~~iYk~ 757 (963)
T COG4403 699 SGYFYALWKIYSVTRDNYLIQSAENSIRHLEILVQKSKDPDFINGL---------------------AGVICVLVSIYKL 757 (963)
T ss_pred chhhhhhHHHHHhcccHHHHHHHHHHHHHHHHHHhhccCcchhhcc---------------------HHHHHHHHHHHhh
Confidence 4566678888889999999999999999888875532 22444431 1255678999999
Q ss_pred cCChhHHHHHHHHHHHHHHhhcccccccchhhhhhh-hccccc--chHHHHHHHHHhcCChhHHHHHhhh
Q 011051 249 ADNTQALKMTKWMVEYFYNRVQNVITKYSVERHWNS-LNEETG--GMNDVLYRLYTITQDPKHLLLAHLF 315 (494)
Q Consensus 249 tG~~kaL~ia~r~aD~~~~~~~~~~~k~~~~~~~~~-l~~e~G--Gm~eaL~~LY~iTGd~ryL~lA~~F 315 (494)
|..++.|++|.-.++++++..-.. ++ ...+ +.-.|| |+.-+|.+||+.|||+++++.++..
T Consensus 758 ~~epk~l~~ais~~~~l~~~~v~~-----d~-s~~~l~gfshg~sgi~~tL~~ly~~T~e~~l~~~i~e~ 821 (963)
T COG4403 758 TDEPKFLELAISLGRILMEKIVGN-----DS-SETVLLGFSHGASGIILTLLKLYEATGEESLLKKIKEL 821 (963)
T ss_pred ccchHHHHHHHHHHHHHHHHhhcc-----cc-ccceecccccchHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 999999999999999988653221 11 1112 222344 6678999999999999999998654
No 27
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 47 GH47 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.113 from EC). Alpha-mannosidase is involved in the maturation of Asn-linked oligo-saccharides []. The enzyme hydrolyses terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide man(9)(glcnac)(2) in a calcium-dependent manner. The mannose residues are trimmed away to produce, first, man(8)glcnac(2), then a man(5)(glcnac)(2) structure.; GO: 0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, 0005509 calcium ion binding, 0016020 membrane; PDB: 2RI9_A 2RI8_B 1KRE_B 1KKT_A 1KRF_A 1NXC_A 1G6I_A 1DL2_A 1HCU_A 1FO2_A ....
Probab=95.95 E-value=0.055 Score=58.71 Aligned_cols=202 Identities=18% Similarity=0.104 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHHc--CChhHHHHHHHHHHHHHHhhcccccccchhh----------hhh--hhcccccchHHHHHHHHHh
Q 011051 237 KILAGLLDQYTFA--DNTQALKMTKWMVEYFYNRVQNVITKYSVER----------HWN--SLNEETGGMNDVLYRLYTI 302 (494)
Q Consensus 237 kl~~GLvd~y~~t--G~~kaL~ia~r~aD~~~~~~~~~~~k~~~~~----------~~~--~l~~e~GGm~eaL~~LY~i 302 (494)
.++-||+.+|+++ |++.+|+.|+.+||.+...|.. +.+.+... +.. ....|.|.+.--+.+|.++
T Consensus 81 R~lGgLLSay~ls~~~d~~lL~kA~~lad~Ll~aF~t-~~g~P~~~~n~~~~~~~~~~~~~~~la~~gs~~lEf~~LS~l 159 (452)
T PF01532_consen 81 RVLGGLLSAYDLSGEGDPILLSKAVELADRLLPAFDT-PTGIPYPRVNLRTGGKNRWPGGESSLAEAGSLQLEFTRLSQL 159 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSS-SSS---SEEETTTCEEETTCCGEEEHHHHCSSHHHHHHHHHH
T ss_pred HhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHhccC-CCccccceeeecccCCCCCCCCcccccccccceechhHHHHH
Confidence 5789999999999 9999999999999999888853 11222111 000 1113566666678889999
Q ss_pred cCChhHHHHHhhhcccc--------cchhhhhcCCCCCCCccc-------chHHHHHHHHHHHHHhC--ChhHHHHHHHH
Q 011051 303 TQDPKHLLLAHLFDKPC--------FLGLLAVQADDISGFHAN-------THIPVVIGSQMRYEVTG--DPLYKVTGTFF 365 (494)
Q Consensus 303 TGd~ryL~lA~~F~~~~--------~~~~la~~~d~l~~~HAn-------t~ip~~~G~a~~y~~TG--D~~yl~a~~~~ 365 (494)
|||++|.+.|++..+.- +.+-.....|...+.--. ..=..+.-+.+.|.++| |+.|++.-+..
T Consensus 160 Tgd~kY~~~a~~~~~~l~~~~~~~~~~gL~p~~id~~~g~~~~~~~~~Ga~~DS~YEYLlK~~lL~g~~d~~~~~~~~~a 239 (452)
T PF01532_consen 160 TGDPKYFDAADRIYDALWRSQNRSKIPGLFPNFIDPSTGKWTSSSISLGAGGDSFYEYLLKMYLLLGGTDEQYRDMYDEA 239 (452)
T ss_dssp HS-THHHHHHHHHHHHHHCCCCCHSBTTB-BSEEETTTS-BSSTEE-SSTTTHHHHHHHHHHHHHTTTTTHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHHhhhccCCcccCcceecCCcCcccccccccCCCcchHHHhhhhhhhhcCccchHHHHHHHHH
Confidence 99999999998874321 111111111111110000 01224566778999999 98998888888
Q ss_pred HHHHhhcCceecccCCCCCC--CCCCCc--ccc-cCCCCccccchhhHHHHHHHHHhccCCCCchHHHHHHH------Hh
Q 011051 366 MDIVNASHGYATGGTSAGEF--WSDPKR--LAS-TLGTENEESCTTYNMLKVSRHLFRWTKEMVYADYYERA------LT 434 (494)
Q Consensus 366 w~~v~~~~~y~TGG~g~~E~--f~~~~~--L~~-~l~~~~~ETCas~n~lkl~~~L~~~tgd~~YaD~~Er~------Ly 434 (494)
.+.|.++ +...-..-..+. |-.... ... ..+....-+|-.-+|+.+..+++.- .++.+.-++. +|
T Consensus 240 ~~~i~~~-Ll~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~hLsCF~pG~l~Lg~~~~~~---~~~~~~A~~l~~~C~~~y 315 (452)
T PF01532_consen 240 VDAIKKH-LLFRPSTPGDYDLLFLGEYSTGGGGRLSPKMDHLSCFLPGMLALGAKLFND---EGDLELAEELTETCYWLY 315 (452)
T ss_dssp HHHHHHH-TEEEBTTTT--T-EEE-EEETTTTTEEESEEECGGGGHHHHHHHHHHTTTC---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-hhccCCCCCccceeEeeeeecccCccccccccchhhcchhHHHHhhcccCc---hhHHHHHHHHHHHHHHHH
Confidence 8777744 222211111011 111110 000 0013356789999999999999833 5555555443 35
Q ss_pred hhhhccCCC
Q 011051 435 NGVLSIQRG 443 (494)
Q Consensus 435 N~iLa~~~~ 443 (494)
+....++.|
T Consensus 316 ~~~~tGl~P 324 (452)
T PF01532_consen 316 KSTPTGLGP 324 (452)
T ss_dssp HTSSSSS--
T ss_pred HhcccCCCc
Confidence 555555665
No 28
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=95.16 E-value=0.13 Score=49.56 Aligned_cols=145 Identities=22% Similarity=0.311 Sum_probs=89.4
Q ss_pred CCccCCCcCccccchhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhCCCcccccCCchhHhhhhhcCCCCc----
Q 011051 155 EGWEDPTCELRGHFVGHYLSASAHMWASTHNVTLKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFEALKPVWA---- 230 (494)
Q Consensus 155 ggWe~~d~~lrGh~~G~~LsA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~~~p~~~~~~l~~~~~~W~---- 230 (494)
.||.+.=+ -|+=||..+++|..|+|++..+.+++.++-...--+ ..|-+..+.. +..|-
T Consensus 24 ~gW~Sama------QG~a~s~l~RAy~~t~d~~Yl~aA~~al~~f~~~~~--~GG~~~~~~~---------~~~wyeEYp 86 (189)
T PF06662_consen 24 PGWYSAMA------QGQAISVLARAYQLTGDEKYLDAAKKALNSFKVPVE--EGGVLATFKN---------KYPWYEEYP 86 (189)
T ss_pred CCcHhHHH------HHHHHHHHHHHHHhHCCHHHHHHHHHHHHHhcChHh--hCCeeEEecC---------CcEeEeecC
Confidence 37876432 499999999999999999999999999888755544 4555544321 01222
Q ss_pred ---ccchH-HHH--HHHHHHHHHHcCChhHHHHHHHHHHHHHHhhcccc-cccc-hh-hh---hhh--hc--ccccchHH
Q 011051 231 ---PYYTI-HKI--LAGLLDQYTFADNTQALKMTKWMVEYFYNRVQNVI-TKYS-VE-RH---WNS--LN--EETGGMND 294 (494)
Q Consensus 231 ---p~Y~~-hkl--~~GLvd~y~~tG~~kaL~ia~r~aD~~~~~~~~~~-~k~~-~~-~~---~~~--l~--~e~GGm~e 294 (494)
|.|++ |+| +.||-|++..+++++|.++..+-.+=+.+.+...- +..+ .+ .| ... +. .-|.-|-.
T Consensus 87 ~~p~s~VLNGfiysL~GLyd~~~~~~~~~A~~lf~~Gl~sLk~~Lp~yD~G~wS~Ydl~h~~~~~~~~~a~~~YH~lHi~ 166 (189)
T PF06662_consen 87 TTPPSYVLNGFIYSLIGLYDYYRLTGDEEAKELFDKGLKSLKKMLPLYDTGSWSRYDLRHFTLGNAPNIARWDYHRLHIQ 166 (189)
T ss_pred CCCCCEEeehHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhhcCCCchhhccccccccCcCcCcchHHHHHHH
Confidence 33444 444 35899999999999888766655444433321100 0000 00 00 000 00 01112224
Q ss_pred HHHHHHHhcCChhHHHHHhhhc
Q 011051 295 VLYRLYTITQDPKHLLLAHLFD 316 (494)
Q Consensus 295 aL~~LY~iTGd~ryL~lA~~F~ 316 (494)
=|..||.+|||+.+.+.|+++.
T Consensus 167 qL~~L~~it~d~~f~~~a~rW~ 188 (189)
T PF06662_consen 167 QLKWLYSITGDPIFKEYAERWK 188 (189)
T ss_pred HHHHHHHhcCCHHHHHHHHHhc
Confidence 6888999999999999999875
No 29
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase. Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition.
Probab=94.96 E-value=1.2 Score=46.70 Aligned_cols=185 Identities=12% Similarity=-0.020 Sum_probs=102.9
Q ss_pred CChhHHHHHHHHHHHHHHHhhhCCCcccccCCc-hhHhhhhhcCCCCcccchHHH----HHHHHHHHHHHc-CChhHHHH
Q 011051 184 HNVTLKEKMTAVVSALSECQNKMGSGYLSAFPS-EQFDRFEALKPVWAPYYTIHK----ILAGLLDQYTFA-DNTQALKM 257 (494)
Q Consensus 184 ~D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~~~p~-~~~~~l~~~~~~W~p~Y~~hk----l~~GLvd~y~~t-G~~kaL~i 257 (494)
.+.+..+.+.++++.+.+.+....++|+...+. ...... ......+.--+.| ++..|...|+.+ ++++.+++
T Consensus 120 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~G~aHG~aGi~~~L~~~~~~~~~~~~~~~~ 197 (382)
T cd04793 120 PDSELLREILDYLVYLTEPLNQDITLYIWSENQPSETESK--EFPEGHINLGLAHGIAGPLALLALAKERGIRVDGQLEA 197 (382)
T ss_pred cchhHHHHHHHHHHHHHHHHhcCCCCccCcCcCCCccccc--cCCCccccccchhcchHHHHHHHHHHHcCCCcCChHHH
Confidence 567777778888888777643223333332111 000000 0000001101112 556677788888 89999999
Q ss_pred HHHHHHHHHHhhcc-----ccc-ccchhh------hhh---hhccccc--chHHHHHHHHHhcCChhHHHHHhhhccccc
Q 011051 258 TKWMVEYFYNRVQN-----VIT-KYSVER------HWN---SLNEETG--GMNDVLYRLYTITQDPKHLLLAHLFDKPCF 320 (494)
Q Consensus 258 a~r~aD~~~~~~~~-----~~~-k~~~~~------~~~---~l~~e~G--Gm~eaL~~LY~iTGd~ryL~lA~~F~~~~~ 320 (494)
+.+..+|..+.+-+ +.+ ..+... ... ...--|| |+..++..+++.++|+++++.|....+...
T Consensus 198 i~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~a~~~~~~~~ 277 (382)
T cd04793 198 IQKIIAWLDRWRLKNRKGPWWPGLITNREQIGGRPNNPNPFRDAWCYGTPGIARALQLAGKALDDQKLQEAAEKILKAAL 277 (382)
T ss_pred HHHHHHHHHHHHHhCCCCCCCcccccHHHHhccccccCCCCCCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 99998887665421 000 000000 000 0111233 777899999999999999999987754332
Q ss_pred chhhhhc-CCCCCCCcccchHHHHHHHHHHHHHhCChhHHHHHHHHHHHHhhc
Q 011051 321 LGLLAVQ-ADDISGFHANTHIPVVIGSQMRYEVTGDPLYKVTGTFFMDIVNAS 372 (494)
Q Consensus 321 ~~~la~~-~d~l~~~HAnt~ip~~~G~a~~y~~TGD~~yl~a~~~~w~~v~~~ 372 (494)
-...... .....-.|-..- +...+.++|+.|+|++++++++++.+.+.+.
T Consensus 278 ~~~~~~~~~~~~~lChG~~G--~~~~l~~~~~~~~~~~~~~~a~~~~~~~l~~ 328 (382)
T cd04793 278 KDKKQLSKLISPTLCHGLAG--LLFIFYLLYKDTNTNEFKSALEYLLNQIISS 328 (382)
T ss_pred hChhhhccCCCCCcCccHHH--HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 1100000 111112344222 3455568899999999999999999988754
No 30
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=94.89 E-value=0.26 Score=51.16 Aligned_cols=126 Identities=20% Similarity=0.098 Sum_probs=83.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHHHHhhhCCCcccccCCchhHhhhhhcCCCCcccchHH--HHHHHHHHHHHHcCChh
Q 011051 176 SAHMWASTHNVTLKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFEALKPVWAPYYTIH--KILAGLLDQYTFADNTQ 253 (494)
Q Consensus 176 ~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~~~p~~~~~~l~~~~~~W~p~Y~~h--kl~~GLvd~y~~tG~~k 253 (494)
...++..++|+++++.+...++.+.+.+. ++|.+...... +-......| |-| =++..++.+++.+++++
T Consensus 174 L~~~~~~~~~~~~~~~i~~~i~~~~~~~~--~~g~w~~~~~~---~~~~~~~~w----ChG~~Gi~~~l~~~~~~~~~~~ 244 (343)
T cd04794 174 LLQTPLFLLKPSLAPLIKRSLDYLLSLQF--PSGNFPSSLGN---RKRDRLVQW----CHGAPGIVYLLAKAYLVFKEEQ 244 (343)
T ss_pred HHhhhhhcCCccHHHHHHHHHHHHHHhhc--cCCCCCCccCC---CCCCccccc----cCCCchHHHHHHHHHHHhCCHH
Confidence 44445567899999999999999988877 67754221110 000000112 322 26677889999999999
Q ss_pred HHHHHHHHHHHHHHhhcccccccchhhhhhhhcccccchHHHHHHHHHhcCChhHHHHHhhhccc
Q 011051 254 ALKMTKWMVEYFYNRVQNVITKYSVERHWNSLNEETGGMNDVLYRLYTITQDPKHLLLAHLFDKP 318 (494)
Q Consensus 254 aL~ia~r~aD~~~~~~~~~~~k~~~~~~~~~l~~e~GGm~eaL~~LY~iTGd~ryL~lA~~F~~~ 318 (494)
.++.+.+.++.+.++ +. ...++ .+-.+.-|.-++|.++|+.|++++|++.|..+.+.
T Consensus 245 ~~~~~~~~~~~~~~~-g~--~~~~~-----~lCHG~~G~~~~lL~~~~~~~~~~~~~~a~~~~~~ 301 (343)
T cd04794 245 YLEAAIKCGELIWKR-GL--LKKGP-----GLCHGIAGNAYAFLLLYRLTGDLKYLYRACKFAEF 301 (343)
T ss_pred HHHHHHHHHHHHHHh-CC--ccCCC-----ccccCccchHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 999999988876543 11 00000 12223347778999999999999999999888553
No 31
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 47 GH47 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.113 from EC). Alpha-mannosidase is involved in the maturation of Asn-linked oligo-saccharides []. The enzyme hydrolyses terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide man(9)(glcnac)(2) in a calcium-dependent manner. The mannose residues are trimmed away to produce, first, man(8)glcnac(2), then a man(5)(glcnac)(2) structure.; GO: 0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, 0005509 calcium ion binding, 0016020 membrane; PDB: 2RI9_A 2RI8_B 1KRE_B 1KKT_A 1KRF_A 1NXC_A 1G6I_A 1DL2_A 1HCU_A 1FO2_A ....
Probab=94.84 E-value=0.08 Score=57.47 Aligned_cols=267 Identities=9% Similarity=0.053 Sum_probs=139.8
Q ss_pred chhHHHHHHHHHHHhc--CChhHHHHHHHHHHHHHHHhhhCCCcccccCCchhHhhhhhcCCCCccc-chH---HHHHHH
Q 011051 168 FVGHYLSASAHMWAST--HNVTLKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFEALKPVWAPY-YTI---HKILAG 241 (494)
Q Consensus 168 ~~G~~LsA~a~~~a~t--~D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~~~p~~~~~~l~~~~~~W~p~-Y~~---hkl~~G 241 (494)
+.-.+|.|+.-+|..+ +|+.|.+|+.++.|.|..+-+. ++|.- ++.-.+.. .....|.+. =++ |-+..-
T Consensus 78 t~iR~lGgLLSay~ls~~~d~~lL~kA~~lad~Ll~aF~t-~~g~P--~~~~n~~~--~~~~~~~~~~~~la~~gs~~lE 152 (452)
T PF01532_consen 78 TTIRVLGGLLSAYDLSGEGDPILLSKAVELADRLLPAFDT-PTGIP--YPRVNLRT--GGKNRWPGGESSLAEAGSLQLE 152 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSS-SSS-----SEEETTT--CEEETTCCGEEEHHHHCSSHHH
T ss_pred hhhHhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHhccC-CCccc--cceeeecc--cCCCCCCCCcccccccccceec
Confidence 4678888887777878 9999999999999999888753 55542 22111100 011122210 122 223344
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHHHhh-----cccccc-cchh-hhhhhhcccccchH----HHHHHHHHhcC--ChhH
Q 011051 242 LLDQYTFADNTQALKMTKWMVEYFYNRV-----QNVITK-YSVE-RHWNSLNEETGGMN----DVLYRLYTITQ--DPKH 308 (494)
Q Consensus 242 Lvd~y~~tG~~kaL~ia~r~aD~~~~~~-----~~~~~k-~~~~-~~~~~l~~e~GGm~----eaL~~LY~iTG--d~ry 308 (494)
.....++|||++..+.+.|..+.+.+.- ..+.+. .... ..+..-....|+.. |-|.+.|.++| |+.|
T Consensus 153 f~~LS~lTgd~kY~~~a~~~~~~l~~~~~~~~~~gL~p~~id~~~g~~~~~~~~~Ga~~DS~YEYLlK~~lL~g~~d~~~ 232 (452)
T PF01532_consen 153 FTRLSQLTGDPKYFDAADRIYDALWRSQNRSKIPGLFPNFIDPSTGKWTSSSISLGAGGDSFYEYLLKMYLLLGGTDEQY 232 (452)
T ss_dssp HHHHHHHHS-THHHHHHHHHHHHHHCCCCCHSBTTB-BSEEETTTS-BSSTEE-SSTTTHHHHHHHHHHHHHTTTTTHHH
T ss_pred hhHHHHHhhccHHHHHHHHHHHHHHHhhhccCCcccCcceecCCcCcccccccccCCCcchHHHhhhhhhhhcCccchHH
Confidence 5567789999999999999999998821 111111 0000 00111012345444 79999999999 8888
Q ss_pred HHHHhhhccc---c-cchhhhhc---------CC---CCCCCcccchHHHHHHHH-HH-HHHhCChhHHHHHHHHHHHHh
Q 011051 309 LLLAHLFDKP---C-FLGLLAVQ---------AD---DISGFHANTHIPVVIGSQ-MR-YEVTGDPLYKVTGTFFMDIVN 370 (494)
Q Consensus 309 L~lA~~F~~~---~-~~~~la~~---------~d---~l~~~HAnt~ip~~~G~a-~~-y~~TGD~~yl~a~~~~w~~v~ 370 (494)
+++=+...+. . ...|...+ .+ ...-.|-..|+-++.|-. .+ ...-+++.+++.++.+.+.-.
T Consensus 233 ~~~~~~a~~~i~~~Ll~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~hLsCF~pG~l~Lg~~~~~~~~~~~~A~~l~~~C~ 312 (452)
T PF01532_consen 233 RDMYDEAVDAIKKHLLFRPSTPGDYDLLFLGEYSTGGGGRLSPKMDHLSCFLPGMLALGAKLFNDEGDLELAEELTETCY 312 (452)
T ss_dssp HHHHHHHHHHHHHHTEEEBTTTT--T-EEE-EEETTTTTEEESEEECGGGGHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccCCCCCccceeEeeeeecccCccccccccchhhcchhHHHHhhcccCchhHHHHHHHHHHHHH
Confidence 7765444211 1 11111000 00 000112234555554432 22 233477899999988777633
Q ss_pred -hcCceecccCCCCCCCCCCCccc----------ccCCCCccccchhhHHHHHHHHHhccCCCCchHHHHHHHHhhhhhc
Q 011051 371 -ASHGYATGGTSAGEFWSDPKRLA----------STLGTENEESCTTYNMLKVSRHLFRWTKEMVYADYYERALTNGVLS 439 (494)
Q Consensus 371 -~~~~y~TGG~g~~E~f~~~~~L~----------~~l~~~~~ETCas~n~lkl~~~L~~~tgd~~YaD~~Er~LyN~iLa 439 (494)
-.+.++||.. -|.|.-..... ..+........-..+.+-..-+|+++|||++|-|+-.. +|++|-.
T Consensus 313 ~~y~~~~tGl~--PE~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~LRPE~iES~fylyR~TgD~~yre~gw~-if~ai~k 389 (452)
T PF01532_consen 313 WLYKSTPTGLG--PEIFSFDPCEENCQWDEERKDFMIKISDPRYLLRPETIESLFYLYRATGDPKYREWGWD-IFQAIEK 389 (452)
T ss_dssp HHHHTSSSSS----SEEEESCSCG--TEETGGCSCCHHGGG--B-S--HHHHHHHHHHHHH-BHHHHHHHHH-HHHHHHH
T ss_pred HHHHhcccCCC--ceEEEeeccccccccchhhcccccccccccccchhhhhhheeEEEEEcCCchHHHHHHH-HHHHHHH
Confidence 3455566654 24332211000 00000011122224667788899999999999998765 4555555
Q ss_pred cCC
Q 011051 440 IQR 442 (494)
Q Consensus 440 ~~~ 442 (494)
.-.
T Consensus 390 ~~r 392 (452)
T PF01532_consen 390 YCR 392 (452)
T ss_dssp HTE
T ss_pred hcc
Confidence 433
No 32
>PTZ00470 glycoside hydrolase family 47 protein; Provisional
Probab=94.82 E-value=1.4 Score=48.93 Aligned_cols=261 Identities=12% Similarity=0.125 Sum_probs=137.6
Q ss_pred chhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhCCCcccccCCchhHhhhh---hcCCCCc-c---cchHHHHHH
Q 011051 168 FVGHYLSASAHMWASTHNVTLKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFE---ALKPVWA-P---YYTIHKILA 240 (494)
Q Consensus 168 ~~G~~LsA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~~~p~~~~~~l~---~~~~~W~-p---~Y~~hkl~~ 240 (494)
+.-.+|.|+.-+|..++|+.|++|+.++.|.|..+=+. +.|. |-..+ ++. .....|. + .=.+|-+..
T Consensus 156 ttIR~LGGLLSAy~Ls~d~~lL~kA~dLgd~Ll~AFdT-ptgi----P~~~v-nl~~g~~~~~~~~~~~~~lAe~gSl~L 229 (522)
T PTZ00470 156 TTIRVLGGLLSAYDLTGDEMYLEKAREIADRLLPAFNE-DTGF----PASEI-NLATGRKSYPGWAGGCSILSEVGTLQL 229 (522)
T ss_pred eehhhHhHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcC-CCCC----Cccee-ecccCCCCCcccCCCccchhhhhhHHH
Confidence 35788888888888899999999999999999988642 4442 21111 111 1122342 1 112344555
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHHHHhhcccccccc----h-hhhhhhhcccccchH----HHHHHHHHhcC--ChhHH
Q 011051 241 GLLDQYTFADNTQALKMTKWMVEYFYNRVQNVITKYS----V-ERHWNSLNEETGGMN----DVLYRLYTITQ--DPKHL 309 (494)
Q Consensus 241 GLvd~y~~tG~~kaL~ia~r~aD~~~~~~~~~~~k~~----~-~~~~~~l~~e~GGm~----eaL~~LY~iTG--d~ryL 309 (494)
-.....++|||++..+.+.|..+.+.+.-.+.++-.+ . ...|..-....|++. |-|.+.|-++| |+.|+
T Consensus 230 EF~~LS~lTGd~kY~~~a~~i~~~l~~~~~~~~GL~p~~i~~~~g~~~~~~~siGa~~DS~YEYLlK~~il~~~~d~~~~ 309 (522)
T PTZ00470 230 EFNYLSEITGDPKYAEYVDKVMDALFSMKPAINGLYPIFLNPDAGRFCGNHISLGALGDSYYEYLLKQWLYTNGREERYR 309 (522)
T ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHHhcCCCCCCccceEECCccCccCCCceeecCCcchhHHHHHHHHHhcCCCcHHHH
Confidence 5667788999999999999999998764221011000 0 001110011334443 78899999996 77777
Q ss_pred HHHhhhccc---c-cchh---h--hhcCCCCCCCcccchHHHHHHHHHHHH--------HhCChhHHHHHHHHHHHHh-h
Q 011051 310 LLAHLFDKP---C-FLGL---L--AVQADDISGFHANTHIPVVIGSQMRYE--------VTGDPLYKVTGTFFMDIVN-A 371 (494)
Q Consensus 310 ~lA~~F~~~---~-~~~~---l--a~~~d~l~~~HAnt~ip~~~G~a~~y~--------~TGD~~yl~a~~~~w~~v~-~ 371 (494)
++-+...+. . +..+ + ....+.-.-.|-..|+-++.|-.-+-- ...++++++.++.+.+.-. .
T Consensus 310 ~~~~~a~~~i~~~l~~~s~~~~~~v~~~~~~~~~~~~~hL~cF~gG~~aLg~~~~~~~~~~~~~~~~~~a~~l~~tC~~~ 389 (522)
T PTZ00470 310 RLFVESAKGIIEHLYKRSPKGLTYIAEMDGGSLTNKMEHLACFAGGMFALGAAINITPDDEKSARYMEVGEEVTKTCYET 389 (522)
T ss_pred HHHHHHHHHHHHHhcccCCCCcEEEeeccCCcCcchhhhhhhhccchhhhcccccccccccccHHHHHHHHHHHHHHHHH
Confidence 654443111 0 0000 0 000000011244456666655432211 1134567787777666532 2
Q ss_pred cCceecccCCCCCCCCCCC---cccccC-CCCccccchhhHHHHHHHHHhccCCCCchHHHHHHHHhhhhhcc
Q 011051 372 SHGYATGGTSAGEFWSDPK---RLASTL-GTENEESCTTYNMLKVSRHLFRWTKEMVYADYYERALTNGVLSI 440 (494)
Q Consensus 372 ~~~y~TGG~g~~E~f~~~~---~L~~~l-~~~~~ETCas~n~lkl~~~L~~~tgd~~YaD~~Er~LyN~iLa~ 440 (494)
.+...||- ++ |.|.-.. ++.-.. ...|- --.+.+-+.-.|+++|||++|-|+-.+ +|.+|-..
T Consensus 390 Y~~~~tGl-~P-E~~~~~~~~~~~~~~~~d~~Y~---LRPE~iES~fylyR~TgD~~yre~gW~-~f~ai~k~ 456 (522)
T PTZ00470 390 YATSPTGL-GP-EIFHFDPNSGDISPNVHDSHYI---LRPETVESIFILYRLTGDPKYREWAWK-IFQAIEKH 456 (522)
T ss_pred HHhcccCC-CC-ceEEeccCccccccccCCCCCC---CChhHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHH
Confidence 33445543 33 4443110 000000 01110 012334456678999999999998866 44555443
No 33
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms]
Probab=94.08 E-value=0.27 Score=50.75 Aligned_cols=126 Identities=21% Similarity=0.313 Sum_probs=82.1
Q ss_pred hHHHHHHHHHHHhc----CChhHHHHHHHHHHHHHHHhhhCCCcccccCCch---hHhhhhhcCCCCc---ccchHHHHH
Q 011051 170 GHYLSASAHMWAST----HNVTLKEKMTAVVSALSECQNKMGSGYLSAFPSE---QFDRFEALKPVWA---PYYTIHKIL 239 (494)
Q Consensus 170 G~~LsA~a~~~a~t----~D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~~~p~~---~~~~l~~~~~~W~---p~Y~~hkl~ 239 (494)
.|=|-|+-+++... .++++.+-+...||.+.+-|. ++|- ||.. .-++|- .|. |- +.
T Consensus 221 AhGLagI~~vLm~~~L~~d~~~~~~dVK~sldym~~~rf--psGN---yP~s~~~~~drLV----hWcHGApG-----v~ 286 (403)
T KOG2787|consen 221 AHGLAGILYVLMDPTLKVDQPALLKDVKGSLDYMIQNRF--PSGN---YPSSEGNKRDRLV----HWCHGAPG-----VA 286 (403)
T ss_pred hhhHHHHHHHHhCCCCCCcchhHHHhhhhHHHHHHHccC--CCCC---CCcccCCCcceee----eeccCCch-----HH
Confidence 34455555555432 456788889999999977777 7764 3432 111221 242 32 23
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHHHhhcccccccchhhhhhhhcccccchHHHHHHHHHhcCChhHHHHHhhhcc
Q 011051 240 AGLLDQYTFADNTQALKMTKWMVEYFYNRVQNVITKYSVERHWNSLNEETGGMNDVLYRLYTITQDPKHLLLAHLFDK 317 (494)
Q Consensus 240 ~GLvd~y~~tG~~kaL~ia~r~aD~~~~~~~~~~~k~~~~~~~~~l~~e~GGm~eaL~~LY~iTGd~ryL~lA~~F~~ 317 (494)
--|+.+|++.+.++.|+.+.+.+|-+.++ | ++.| +.. +..+..|-.-++.-||++|+|.+||-=|+.|.+
T Consensus 287 ~~L~kAy~VF~Eekyl~aa~ecadvVW~r-G-lLkk-g~G-----ichGvaGNaYvFLsLyRLT~d~kYlyRA~kFae 356 (403)
T KOG2787|consen 287 YTLAKAYQVFKEEKYLEAAMECADVVWKR-G-LLKK-GVG-----ICHGVAGNAYVFLSLYRLTGDMKYLYRAKKFAE 356 (403)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHh-h-hhhc-CCc-----ccccccCchhhhHhHHHHcCcHHHHHHHHHHHH
Confidence 33668899999999999999999988876 1 1111 110 111222444689999999999999999999964
No 34
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=93.52 E-value=3.1 Score=44.30 Aligned_cols=194 Identities=15% Similarity=0.063 Sum_probs=110.0
Q ss_pred HHHHHHHHHhcCChh---HHHHHHHHHHHHHHHhhhCCCcccccCCchhHhhhhhcCCCCcccchHHHHHHHHHHHHHHc
Q 011051 173 LSASAHMWASTHNVT---LKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFEALKPVWAPYYTIHKILAGLLDQYTFA 249 (494)
Q Consensus 173 LsA~a~~~a~t~D~~---L~~k~d~~Vd~l~~~Q~~~~dGYL~~~p~~~~~~l~~~~~~W~p~Y~~hkl~~GLvd~y~~t 249 (494)
|=|+|. ++..++++ +++..-.+++....-++.---||.-+.|.+. ...++ | +| ||++++++.|+++
T Consensus 122 llA~A~-~a~a~~~~a~~~~~~a~~~l~~~~~~~~~pl~~~e~~~~~~~---pl~sN----p--~M-Hl~EA~LA~~e~~ 190 (388)
T COG2942 122 LLAAAH-AATAGPPRADELLDEALDVLERRFWREEHPLGGFEEDNPGSA---PLGSN----P--HM-HLLEAMLAAYEAT 190 (388)
T ss_pred HHHHHH-HHhcCChhHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCC---ccCCC----c--ch-HHHHHHHHHHhcc
Confidence 445555 34445554 5555555555555555422234444443211 11111 2 22 7999999999999
Q ss_pred CChhHHHHHHHHHHHHHHhhcccccc----cchhhhhhh---hc--ccccchH----HHHHHHHHhcCChhHHHHHhhhc
Q 011051 250 DNTQALKMTKWMVEYFYNRVQNVITK----YSVERHWNS---LN--EETGGMN----DVLYRLYTITQDPKHLLLAHLFD 316 (494)
Q Consensus 250 G~~kaL~ia~r~aD~~~~~~~~~~~k----~~~~~~~~~---l~--~e~GGm~----eaL~~LY~iTGd~ryL~lA~~F~ 316 (494)
|.+..++.+.+.|+-+..+|-..... .-+++ |.. .+ .--.||. --|+++-+.-|+...+..|++..
T Consensus 191 ~~~~~~~~A~~ia~l~~~rf~d~~~g~v~E~fd~d-W~p~~~frg~~~ePGH~fEW~~Lll~~a~~~~~~~l~~~A~~lf 269 (388)
T COG2942 191 GEKTWLDRADRIADLIISRFADAESGLVREHFDHD-WNPAHGFRGRGIEPGHQFEWAWLLLDIARRRGRAWLIEAARRLF 269 (388)
T ss_pred CchhHHHHHHHHHHHHHHHhhhcccCcHhhhcccc-CCcCCCcccCCCCCchHHHHHHHHHHHHHHhchhHHHHHHHHHH
Confidence 99999999999999999987431111 11111 110 11 0112443 26788999999999999998875
Q ss_pred cccc---chhhhhc------CCCCCCCc--ccchHHH---HHHHHHHHHHhC-ChhHHHHHHHHHHHHhhcC-ceecccC
Q 011051 317 KPCF---LGLLAVQ------ADDISGFH--ANTHIPV---VIGSQMRYEVTG-DPLYKVTGTFFMDIVNASH-GYATGGT 380 (494)
Q Consensus 317 ~~~~---~~~la~~------~d~l~~~H--Ant~ip~---~~G~a~~y~~TG-D~~yl~a~~~~w~~v~~~~-~y~TGG~ 380 (494)
+... .++...+ .|. ..| ..+.-|+ +-.+..++..|| ++.|.+...++|+-...+- ..+.|..
T Consensus 270 ~~a~~~g~d~~~gg~~~sl~~D~--~~~d~~~r~WpQ~E~l~AA~ala~~~~~~~~y~~~~~R~~~~~~~hl~d~~~G~W 347 (388)
T COG2942 270 DIAVADGWDPERGGAYYSLDDDG--SPHDRQQRLWPQTEALKAAVALAETTGARERYWQWYARAWDYLWWHLDDPEYGLW 347 (388)
T ss_pred HHHHHhccCcccCeEEEEecCCC--CcCCHHHhhChHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhcCCCcCCcc
Confidence 5432 1111100 111 112 1122233 334446778899 9999999999999877543 3455544
No 35
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=93.49 E-value=0.61 Score=49.46 Aligned_cols=142 Identities=11% Similarity=0.027 Sum_probs=97.9
Q ss_pred chhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhCCCcccccCCchhHhhhhhcCCCCcccchHHHHHHH---HHH
Q 011051 168 FVGHYLSASAHMWASTHNVTLKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFEALKPVWAPYYTIHKILAG---LLD 244 (494)
Q Consensus 168 ~~G~~LsA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~~~p~~~~~~l~~~~~~W~p~Y~~hkl~~G---Lvd 244 (494)
-.=|-+||+-..|..+++...+++++++++.+..-+-..++|=+.-++...|+-...-.+. .++=||-++- +++
T Consensus 175 p~MHl~EA~LA~~e~~~~~~~~~~A~~ia~l~~~rf~d~~~g~v~E~fd~dW~p~~~frg~---~~ePGH~fEW~~Lll~ 251 (388)
T COG2942 175 PHMHLLEAMLAAYEATGEKTWLDRADRIADLIISRFADAESGLVREHFDHDWNPAHGFRGR---GIEPGHQFEWAWLLLD 251 (388)
T ss_pred cchHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhhhcccCcHhhhccccCCcCCCcccC---CCCCchHHHHHHHHHH
Confidence 3679999999999999999999999999999999998778888887766555221111111 1222343332 568
Q ss_pred HHHHcCChhHHHHHHHHHHHHHHh-----hcccc-----ccc---chhhhhhhhcccccchHHHHHHHHHhcC-ChhHHH
Q 011051 245 QYTFADNTQALKMTKWMVEYFYNR-----VQNVI-----TKY---SVERHWNSLNEETGGMNDVLYRLYTITQ-DPKHLL 310 (494)
Q Consensus 245 ~y~~tG~~kaL~ia~r~aD~~~~~-----~~~~~-----~k~---~~~~~~~~l~~e~GGm~eaL~~LY~iTG-d~ryL~ 310 (494)
..+..|+.+++..|+++.+-..+. ++-.. +.. +....|.. +|. -.+++-|+..|| +++|.+
T Consensus 252 ~a~~~~~~~l~~~A~~lf~~a~~~g~d~~~gg~~~sl~~D~~~~d~~~r~WpQ--~E~---l~AA~ala~~~~~~~~y~~ 326 (388)
T COG2942 252 IARRRGRAWLIEAARRLFDIAVADGWDPERGGAYYSLDDDGSPHDRQQRLWPQ--TEA---LKAAVALAETTGARERYWQ 326 (388)
T ss_pred HHHHhchhHHHHHHHHHHHHHHHhccCcccCeEEEEecCCCCcCCHHHhhChH--HHH---HHHHHHHHhcCCchHHHHH
Confidence 888999999999999998876654 11000 000 01112221 233 148889999999 999999
Q ss_pred HHhhhcc
Q 011051 311 LAHLFDK 317 (494)
Q Consensus 311 lA~~F~~ 317 (494)
...++.+
T Consensus 327 ~~~R~~~ 333 (388)
T COG2942 327 WYARAWD 333 (388)
T ss_pred HHHHHHH
Confidence 9988854
No 36
>PF00759 Glyco_hydro_9: Glycosyl hydrolase family 9; InterPro: IPR001701 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 9 GH9 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family E. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1RQ5_A 1CLC_A 3H7L_B 1K72_B 1G87_B 1GA2_A 1KFG_A 1UT9_A 2YIK_A 3RX5_A ....
Probab=93.04 E-value=0.34 Score=52.00 Aligned_cols=128 Identities=16% Similarity=0.011 Sum_probs=72.4
Q ss_pred ChhHHHHHHHHHHHHHHHhhhCCCcccccC------CchhHhhhhh-cCCCCcccch--------HHHHHHHHHHHHHHc
Q 011051 185 NVTLKEKMTAVVSALSECQNKMGSGYLSAF------PSEQFDRFEA-LKPVWAPYYT--------IHKILAGLLDQYTFA 249 (494)
Q Consensus 185 D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~~~------p~~~~~~l~~-~~~~W~p~Y~--------~hkl~~GLvd~y~~t 249 (494)
-+.+++.+..-+|.|.++|. ++|.|-.. ....|.+.+. ..++-...|. .+.+-++|-.++++-
T Consensus 93 ~~dllde~kwg~D~llkm~~--~~~~~~~qvgdg~~~h~~w~~~~~~~~~~~~~~~~~~~~~t~~~~~~AAalA~As~v~ 170 (444)
T PF00759_consen 93 IPDLLDEAKWGLDWLLKMQD--SDGTFYAQVGDGGVDHKVWGRPEIMPDDDPSYRYDAPNPGTDATAEFAAALAAASRVF 170 (444)
T ss_dssp HHHHHHHHHHHHHHHHHTBS--CTTEEEEEESTHHHHHTEESTGGGTGSGESEEEEETTB-EHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccC--CCCceeeeccCccchhhcccCCCCCCCCCCcceEecCCCchHHHHHHHHHHHHHHHhc
Confidence 46788888999999999999 65543221 0112332211 0011111111 234445555666665
Q ss_pred CC------hhHHHHHHHHHHHHHHhhcccccccchhhhhhhhccccc---c---hHHHHHHHHHhcCChhHHHHHhhhcc
Q 011051 250 DN------TQALKMTKWMVEYFYNRVQNVITKYSVERHWNSLNEETG---G---MNDVLYRLYTITQDPKHLLLAHLFDK 317 (494)
Q Consensus 250 G~------~kaL~ia~r~aD~~~~~~~~~~~k~~~~~~~~~l~~e~G---G---m~eaL~~LY~iTGd~ryL~lA~~F~~ 317 (494)
.+ ++.|+.|++.-+|..+..+....... ......++ . +..+-++||+.|||++|++-++.+..
T Consensus 171 k~~d~~~A~~~L~~A~~~~~~a~~~~~~~~~~~~-----~~~~~~Y~~~~~~De~~wAA~~Ly~aTg~~~Y~~~a~~~~~ 245 (444)
T PF00759_consen 171 KDFDPAYAAQCLKAAKEAYAFAKKNPGVYSDNPQ-----PNGGGFYNSSGYEDELAWAAAELYRATGDESYLDYAKEYYD 245 (444)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHSTTHGGGTST-----CTTTTTSHCS-SHHHHHHHHHHHHHHHT-HHHHHHHHHHCC
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhCCCcccCCcc-----cccCCcccCCCcccHHHHHHHHHHHhcCcHHHHHHHHHhHH
Confidence 55 57999999999998776432111000 00001111 1 12378899999999999999988875
Q ss_pred cc
Q 011051 318 PC 319 (494)
Q Consensus 318 ~~ 319 (494)
..
T Consensus 246 ~~ 247 (444)
T PF00759_consen 246 DL 247 (444)
T ss_dssp TS
T ss_pred hh
Confidence 43
No 37
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=91.92 E-value=0.85 Score=50.14 Aligned_cols=140 Identities=24% Similarity=0.207 Sum_probs=87.7
Q ss_pred hHHHHHHHHHHHhcC-ChhHHHHHHHHHHHHHHHhhhC-------CCcccccCCchhHhhhhh-cCCCCcc----cchHH
Q 011051 170 GHYLSASAHMWASTH-NVTLKEKMTAVVSALSECQNKM-------GSGYLSAFPSEQFDRFEA-LKPVWAP----YYTIH 236 (494)
Q Consensus 170 G~~LsA~a~~~a~t~-D~~L~~k~d~~Vd~l~~~Q~~~-------~dGYL~~~p~~~~~~l~~-~~~~W~p----~Y~~h 236 (494)
|-.|++.|.++..++ ++++.+.+...++.|.+-=-.. +.=|.++--+ ++. .+..|+| -|-.
T Consensus 508 GLviSgl~kag~~~~a~~~y~~~a~~~a~fl~k~m~d~~eklliR~scY~ga~g~-----ve~~n~~~~~~~FldDYAF- 581 (786)
T KOG2244|consen 508 GLVISGLAKAGKILKAEPEYTKYAFPVANFLPKDMIDVAEKLLIRGSCYDGASGR-----VEHSNRPSKAPAFLDDYAF- 581 (786)
T ss_pred chhhHHHHHHHHHhhcCHHHHHHHHHHHhhhhhhhhchhhhheeecccccCCCcc-----eeccCCccccchhhhhHHH-
Confidence 778999999998776 4588888888777765443211 1223332111 111 2244554 3544
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHhhcc----cccccchhhhhhhhcccccchH--------HHHHHHHHhcC
Q 011051 237 KILAGLLDQYTFADNTQALKMTKWMVEYFYNRVQN----VITKYSVERHWNSLNEETGGMN--------DVLYRLYTITQ 304 (494)
Q Consensus 237 kl~~GLvd~y~~tG~~kaL~ia~r~aD~~~~~~~~----~~~k~~~~~~~~~l~~e~GGm~--------eaL~~LY~iTG 304 (494)
|+.||+|+|+++|+-..|+-|+++-|=.++.|=+ .+.+.+.+..--.+...+.|-+ -.|++||.+++
T Consensus 582 -lI~gLLDlYea~~~~e~LkwA~~LQdtqdklFWdgggYF~Se~~~~~v~vRlkeDhDGAEPs~nSVsahNLvrL~~~~~ 660 (786)
T KOG2244|consen 582 -LISGLLDLYEAGGGIEWLKWAIKLQDTQDKLFWDGGGYFISEKTDEDVSVRLKEDHDGAEPSGNSVSAHNLVRLASIVA 660 (786)
T ss_pred -HHHHHHHHHHccCchHHHHHHHHHHHHHHHheecCCceeeeeccCCCcceeeccccCCCCCCccchhhhhHHHHHHHhh
Confidence 9999999999999999999999999888775522 0000011100001112222221 37999999999
Q ss_pred ChhHHHHHhhhc
Q 011051 305 DPKHLLLAHLFD 316 (494)
Q Consensus 305 d~ryL~lA~~F~ 316 (494)
.+.||+-|.+..
T Consensus 661 ~e~yl~ka~~ll 672 (786)
T KOG2244|consen 661 AESYLNKAHRLL 672 (786)
T ss_pred HHHHHHHHHHHH
Confidence 999999997753
No 38
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others. The 3D structure of the lantibiotic cyclase from L. lactis has been determined by X-ray crystallography to 2.5A resolution []. The globular structure is characterised by an all-alpha fold, in which an outer ring of helices envelops an inner toroid composed of 7 shorter, hydrophobic helices. This 7-fold hyrophobic periodicity has led several authors to claim various members of the family, including eukaryotic LanC-1 and GCR2, to be novel G protein-coupled receptors [, ]; some of these claims have since been corrected [, , ]. ; PDB: 3E6U_D 3E73_B 2G0D_A 2G02_A.
Probab=90.32 E-value=1 Score=46.02 Aligned_cols=185 Identities=16% Similarity=0.120 Sum_probs=101.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHHHHhhhCCCcccccCC-chhHh-hhhhcCCCCcccchHHHHHHHHHHHH-HHcCChh
Q 011051 177 AHMWASTHNVTLKEKMTAVVSALSECQNKMGSGYLSAFP-SEQFD-RFEALKPVWAPYYTIHKILAGLLDQY-TFADNTQ 253 (494)
Q Consensus 177 a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~~~p-~~~~~-~l~~~~~~W~p~Y~~hkl~~GLvd~y-~~tG~~k 253 (494)
...+..++++++.+.+..+++.|.+... ... ....+ -..|. ..... .--+-+-=++.+|...| +.+++++
T Consensus 116 l~~~~~~~~~~~l~~i~~~~~~l~~~~~--~~~-~~~~~~~~~~~~~~~~~----G~aHG~~Gi~~~L~~~~~~~~~~~~ 188 (355)
T PF05147_consen 116 LSLYEKTKDPKYLDIIEKILEKLLESII--NDD-PSENQIGSEWKEGFINL----GFAHGIAGILYALLRLYKKGTKDPE 188 (355)
T ss_dssp CCHHHHHCCHHS-HHHHHHHHHCCCHHC--CCH-TCCGSSSHHCHTTBEE-----STTTSHHHHHHHHCHCCHHT--HHH
T ss_pred HHHHhhccchHHHHHHHHHHHHHHHHHh--hcc-cccCCCccccCCCCccC----CccccHHHHHHHHHHhhhcccCchh
Confidence 3344455888888888888888876666 211 00000 00110 00000 00111112556677777 6999999
Q ss_pred HHHHHHHHHHHHHHhhcc----cccccchhhhh--hhhcccccchHHHHHHHHHhcCChhHHHHHhhhcccccchhhhhc
Q 011051 254 ALKMTKWMVEYFYNRVQN----VITKYSVERHW--NSLNEETGGMNDVLYRLYTITQDPKHLLLAHLFDKPCFLGLLAVQ 327 (494)
Q Consensus 254 aL~ia~r~aD~~~~~~~~----~~~k~~~~~~~--~~l~~e~GGm~eaL~~LY~iTGd~ryL~lA~~F~~~~~~~~la~~ 327 (494)
.++++.+..++..+.... +++....+... .....+..|+.-++.++++.++++.+.+.+..+......... .
T Consensus 189 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WC~G~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 266 (355)
T PF05147_consen 189 YLKLIEQILNFLLKHFNTDDGGWPDNRNNSNYKSRPSWCYGSPGILLALLKAYKILDDEEYDEEAEQALESILQKGL--F 266 (355)
T ss_dssp HHHCHHHHHHHHHHC--TGCCT--SECTHHHHHC--SSSSSHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH-T--C
T ss_pred HHHHHHHHHHHHHHhcCcccCCCCCCCCccccccccccccCcHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHccc--c
Confidence 999999999999887632 11111111100 001112237778999999999999999998877544321100 1
Q ss_pred CCCCCCCcccchHHHHHHHHHHHHHhCChhHHHHHHHHHHHHhhc
Q 011051 328 ADDISGFHANTHIPVVIGSQMRYEVTGDPLYKVTGTFFMDIVNAS 372 (494)
Q Consensus 328 ~d~l~~~HAnt~ip~~~G~a~~y~~TGD~~yl~a~~~~w~~v~~~ 372 (494)
.....=.|...- .+.-+..+|+.++++.+++.++.+++.+++.
T Consensus 267 ~~~~~lCHG~aG--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (355)
T PF05147_consen 267 LNNPSLCHGTAG--ILEILLDLYKYTGDEEYKELANKLIQKLLSY 309 (355)
T ss_dssp TTSS-STTSHHH--HHHHHHHHHHHH--HCCHHHHHHHHHHHCTT
T ss_pred CCCCceeCchHH--hHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 111122354332 3444667899999999999999999998854
No 39
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase. Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition.
Probab=90.20 E-value=2.7 Score=44.12 Aligned_cols=146 Identities=12% Similarity=0.029 Sum_probs=87.2
Q ss_pred cchhHHHHHHHHHHHhc-CChhHHHHHHHHHHHHHHHhhhCCCccccc--CCch-hHhhhhhcCCCCcccchHH--HHHH
Q 011051 167 HFVGHYLSASAHMWAST-HNVTLKEKMTAVVSALSECQNKMGSGYLSA--FPSE-QFDRFEALKPVWAPYYTIH--KILA 240 (494)
Q Consensus 167 h~~G~~LsA~a~~~a~t-~D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~~--~p~~-~~~~l~~~~~~W~p~Y~~h--kl~~ 240 (494)
|=+.=.+.+++.++..+ .++..++.+.+.++.+.+.+.....|-..+ +|.. .+.........-.+.+|.| =+..
T Consensus 172 HG~aGi~~~L~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~wChG~~Gi~~ 251 (382)
T cd04793 172 HGIAGPLALLALAKERGIRVDGQLEAIQKIIAWLDRWRLKNRKGPWWPGLITNREQIGGRPNNPNPFRDAWCYGTPGIAR 251 (382)
T ss_pred hcchHHHHHHHHHHHcCCCcCChHHHHHHHHHHHHHHHHhCCCCCCCcccccHHHHhccccccCCCCCCCCCCCcHHHHH
Confidence 43444556667777777 899999999999998887775333331111 1110 0000000000111234444 3667
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHHHHhhcccccccchhhhhhhhcccccchHHHHHHHHHhcCChhHHHHHhhhcc
Q 011051 241 GLLDQYTFADNTQALKMTKWMVEYFYNRVQNVITKYSVERHWNSLNEETGGMNDVLYRLYTITQDPKHLLLAHLFDK 317 (494)
Q Consensus 241 GLvd~y~~tG~~kaL~ia~r~aD~~~~~~~~~~~k~~~~~~~~~l~~e~GGm~eaL~~LY~iTGd~ryL~lA~~F~~ 317 (494)
+++..++.+++++.++.+.+...-+........+..+ ..+..+.-|+-+.|.++|+.|+|+++++.|+++.+
T Consensus 252 ~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-----~~lChG~~G~~~~l~~~~~~~~~~~~~~~a~~~~~ 323 (382)
T cd04793 252 ALQLAGKALDDQKLQEAAEKILKAALKDKKQLSKLIS-----PTLCHGLAGLLFIFYLLYKDTNTNEFKSALEYLLN 323 (382)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHhChhhhccCCC-----CCcCccHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 7888899999999999988887765543211000000 01222333777899999999999999999988754
No 40
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms]
Probab=89.65 E-value=6.3 Score=45.89 Aligned_cols=160 Identities=18% Similarity=0.168 Sum_probs=94.3
Q ss_pred HHHHhcCChhHHHHHHHHHHHHHHHhhhCCCcccccCCchhHhhhhhcCCCCcccchHHHHHHHHHHHHHHcCChhHHHH
Q 011051 178 HMWASTHNVTLKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFEALKPVWAPYYTIHKILAGLLDQYTFADNTQALKM 257 (494)
Q Consensus 178 ~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~~~p~~~~~~l~~~~~~W~p~Y~~hkl~~GLvd~y~~tG~~kaL~i 257 (494)
++...|+....++.+.+.+..+.+.-...-.+ .+.. -|+.+ =...|. |.--+.++++..+..-
T Consensus 658 yL~~vtgk~~Y~~ia~~~L~~~~~sv~~~~~~-~~ig---a~~G~------~g~~ya-------l~~I~~~~~~~~l~~~ 720 (963)
T COG4403 658 YLALVTGKDYYKEIAIKALQDSRKSVNNNLNP-INIG---AFTGL------SGYFYA-------LWKIYSVTRDNYLIQS 720 (963)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHhhhhccCC-cccc---ccccc------chhhhh-------hHHHHHhcccHHHHHH
Confidence 34446888888888888777765553311112 2110 01111 123444 4455678999998888
Q ss_pred HHHHHHHHHHhhcccccccchhhhhhhhcccccchHHHHHHHHHhcCChhHHHHHhhhcccccchhhhhcCC----CCC-
Q 011051 258 TKWMVEYFYNRVQNVITKYSVERHWNSLNEETGGMNDVLYRLYTITQDPKHLLLAHLFDKPCFLGLLAVQAD----DIS- 332 (494)
Q Consensus 258 a~r~aD~~~~~~~~~~~k~~~~~~~~~l~~e~GGm~eaL~~LY~iTGd~ryL~lA~~F~~~~~~~~la~~~d----~l~- 332 (494)
+.+.+.++...... .+. + ..+ .+-.|.--+|+.+|+.|.++|.|++|.-..+...-.. .+.| .+-
T Consensus 721 ~~~~i~~le~~v~~--~~~-~----d~i-~Gl~g~i~~L~~iYk~~~epk~l~~ais~~~~l~~~~--v~~d~s~~~l~g 790 (963)
T COG4403 721 AENSIRHLEILVQK--SKD-P----DFI-NGLAGVICVLVSIYKLTDEPKFLELAISLGRILMEKI--VGNDSSETVLLG 790 (963)
T ss_pred HHHHHHHHHHHHhh--ccC-c----chh-hccHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHh--hccccccceecc
Confidence 88888876554332 111 1 111 2233444699999999999999999976644332111 1111 111
Q ss_pred CCcccchHHHHHHHHHHHHHhCChhHHHHHHHHH
Q 011051 333 GFHANTHIPVVIGSQMRYEVTGDPLYKVTGTFFM 366 (494)
Q Consensus 333 ~~HAnt~ip~~~G~a~~y~~TGD~~yl~a~~~~w 366 (494)
-.|.+.. ++..++.+|++|||+.++++.+.+.
T Consensus 791 fshg~sg--i~~tL~~ly~~T~e~~l~~~i~e~~ 822 (963)
T COG4403 791 FSHGASG--IILTLLKLYEATGEESLLKKIKELL 822 (963)
T ss_pred cccchHH--HHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 2365444 3556779999999999998887543
No 41
>PLN02266 endoglucanase
Probab=89.02 E-value=6.8 Score=43.41 Aligned_cols=125 Identities=10% Similarity=0.037 Sum_probs=70.2
Q ss_pred ChhHHHHHHHHHHHHHHHhhhCCCccccc-C-----CchhHhhhhhcC-CCCcccch----------HHHHHHHHHHHHH
Q 011051 185 NVTLKEKMTAVVSALSECQNKMGSGYLSA-F-----PSEQFDRFEALK-PVWAPYYT----------IHKILAGLLDQYT 247 (494)
Q Consensus 185 D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~~-~-----p~~~~~~l~~~~-~~W~p~Y~----------~hkl~~GLvd~y~ 247 (494)
-+.+++.+..-+|.|.+||. +||-+-. . +...|..-+... ++ |.|. .+..-++|-++++
T Consensus 129 ~pd~Ldelkw~~D~llk~~~--~~~~vy~qVg~~~~Dh~~W~~Pe~~~~~R--~~y~i~~~~pgsd~a~e~AAALAaas~ 204 (510)
T PLN02266 129 LQNAKDAIRWATDYLLKATA--HPDTIYVQVGDANKDHACWERPEDMDTPR--SVFKVDKNTPGSDVAAETAAALAAASL 204 (510)
T ss_pred cHHHHHHHHHHHHHHHHhcc--CCCeEEEEeCCCCCCcccCCChhhcCCCC--eeEEeCCCCCchHHHHHHHHHHHHHHH
Confidence 57788889999999999997 4443321 1 111222211110 11 2232 2345566666677
Q ss_pred HcCC------hhHHHHHHHHHHHHHHhhcccccccchhhhhhhhcccccchH----HHHHHHHHhcCChhHHHHHhhh
Q 011051 248 FADN------TQALKMTKWMVEYFYNRVQNVITKYSVERHWNSLNEETGGMN----DVLYRLYTITQDPKHLLLAHLF 315 (494)
Q Consensus 248 ~tG~------~kaL~ia~r~aD~~~~~~~~~~~k~~~~~~~~~l~~e~GGm~----eaL~~LY~iTGd~ryL~lA~~F 315 (494)
+-.+ ++.|+.|+++-+|..+.-+.... ++...........+|.. .+-++||+.|||++||+.++..
T Consensus 205 vfk~~D~~yA~~~L~~Ak~ly~fa~~~~g~y~~--~~~~~~~~~y~s~s~~~DEl~WAAawLy~ATGd~~Yl~~~~~~ 280 (510)
T PLN02266 205 VFRKSDPTYSKLLVRRAIRVFQFADKYRGAYSN--GLKPDVCPFYCSYSGYQDELLWGAAWLHKATKNPTYLNYIQVN 280 (510)
T ss_pred HhccCCHHHHHHHHHHHHHHHHHHHhCCCCccC--CCCcccCCCcccCCcchHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 6654 46899999999998764221100 00000000111223333 3778999999999999987654
No 42
>PLN02909 Endoglucanase
Probab=88.61 E-value=8.6 Score=42.38 Aligned_cols=121 Identities=12% Similarity=0.056 Sum_probs=71.6
Q ss_pred CChhHHHHHHHHHHHHHHHhhhCCCcccccC------CchhHhhhhhcCCCCcccch----------HHHHHHHHHHHHH
Q 011051 184 HNVTLKEKMTAVVSALSECQNKMGSGYLSAF------PSEQFDRFEALKPVWAPYYT----------IHKILAGLLDQYT 247 (494)
Q Consensus 184 ~D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~~~------p~~~~~~l~~~~~~W~p~Y~----------~hkl~~GLvd~y~ 247 (494)
+-+.++..+..-+|.|.+||. +||-+-.- +...|..-+.... =-|.|. .+..-++|-.+++
T Consensus 118 ~~~d~ldeikw~~D~llk~~~--~~~~~y~qVg~~~~Dh~~W~~Pe~~~~-~R~~~~i~~~~pgtd~a~~~AAAlA~as~ 194 (486)
T PLN02909 118 ELENVRAAIRWGTDYFLKAAS--RKNRLYVQVGDPNLDHQCWVRPENMKT-PRTVLEIDEKTPGTEIAAETAAAMAASSM 194 (486)
T ss_pred ChHHHHHHHHHHHHHHHHhcc--CCCeEEEEeCCCCCCcccCCChhhccC-CceeEecCCCCCCcHHHHHHHHHHHHHHH
Confidence 347788888899999999998 55433211 1122322221110 012333 4566667777777
Q ss_pred HcCC------hhHHHHHHHHHHHHHHhhcccccccchhhhhhhhcccccchH----HHHHHHHHhcCChhHHHHHhh
Q 011051 248 FADN------TQALKMTKWMVEYFYNRVQNVITKYSVERHWNSLNEETGGMN----DVLYRLYTITQDPKHLLLAHL 314 (494)
Q Consensus 248 ~tG~------~kaL~ia~r~aD~~~~~~~~~~~k~~~~~~~~~l~~e~GGm~----eaL~~LY~iTGd~ryL~lA~~ 314 (494)
+-.+ ++.|+.|+++-+|..+.-+. .+.. ...-...+|-. .+-++||+.|||++||+.++.
T Consensus 195 vfk~~D~~yA~~lL~~Ak~~y~fA~~~~g~----y~~~---~~~y~s~s~y~DEl~WAAawLy~aTgd~~Yl~~~~~ 264 (486)
T PLN02909 195 VFRHVDHKYSRRLLNKAKLLFKFAKAHKGT----YDGE---CPFYCSYSGYNDELLWAATWLYKATKKQMYLKYIKH 264 (486)
T ss_pred hhccCCHHHHHHHHHHHHHHHHHHHhCCCC----cCCC---CCccccCCCcchHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 7665 46899999999998775221 1100 00111222222 377899999999999997654
No 43
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=85.81 E-value=52 Score=36.86 Aligned_cols=212 Identities=14% Similarity=0.111 Sum_probs=114.4
Q ss_pred hcCcchhhHHHHHHhCCCCCCCCCCCccCCCcCccccchhHH-------HHHHHHHHHhcCChhHHHHHHHHHHHHHHHh
Q 011051 131 MLDVDSLVWSFQKTAGSPTAGKAYEGWEDPTCELRGHFVGHY-------LSASAHMWASTHNVTLKEKMTAVVSALSECQ 203 (494)
Q Consensus 131 ~~~~d~lL~nFr~~AGl~~~g~~~ggWe~~d~~lrGh~~G~~-------LsA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q 203 (494)
.+.|.++.+-|..--|+..+|. .++.+|=.||+.||= .|+.|--. ...-+++++.+++--+.|-.+.
T Consensus 417 ~i~p~~~fdl~a~hygvk~sGn-----vs~ssDPhgel~gkNVL~vr~s~e~taanf-~lsve~~kkll~e~~e~L~~aR 490 (786)
T KOG2244|consen 417 AIGPASLFDLFAEHYGVKKSGN-----VSSSSDPHGELAGKNVLIVRNSTEATAANF-SLSVEKYKKLLGECREKLFDAR 490 (786)
T ss_pred CCCcchHHHHHHHHcCCCCCCC-----CCCCCCCcccccCceEEEEecchHhhHhhc-cccHHHHHHHHHHHHHHHHHHh
Confidence 3456667677777778876552 122233446666653 23333211 1223556666666555554443
Q ss_pred hhCCCcccccCCchhHhhhhhcCCCCcccchHHHHHHHHHHHHHHcCCh-hHHHHHHHHHHHHHHhhcccccccchhhhh
Q 011051 204 NKMGSGYLSAFPSEQFDRFEALKPVWAPYYTIHKILAGLLDQYTFADNT-QALKMTKWMVEYFYNRVQNVITKYSVERHW 282 (494)
Q Consensus 204 ~~~~dGYL~~~p~~~~~~l~~~~~~W~p~Y~~hkl~~GLvd~y~~tG~~-kaL~ia~r~aD~~~~~~~~~~~k~~~~~~~ 282 (494)
.+-|.=-|.+- .=-.|.- -++.|++.++.+++-+ +.++-+...++++-+.+-.+-.++- +.
T Consensus 491 ~kRPkPHLDsK----------ii~sWnG-----LviSgl~kag~~~~a~~~y~~~a~~~a~fl~k~m~d~~ekll---iR 552 (786)
T KOG2244|consen 491 LKRPKPHLDSK----------IIVSWNG-----LVISGLAKAGKILKAEPEYTKYAFPVANFLPKDMIDVAEKLL---IR 552 (786)
T ss_pred hcCCCCCccch----------heeeccc-----hhhHHHHHHHHHhhcCHHHHHHHHHHHhhhhhhhhchhhhhe---ee
Confidence 32122111110 0012432 3778999999988876 9999999999988765432211110 00
Q ss_pred hhh------ccccc-------chH-------HHHHHHHHhcCChhHHHHHhhhccc---ccchh------hhhcCCCC--
Q 011051 283 NSL------NEETG-------GMN-------DVLYRLYTITQDPKHLLLAHLFDKP---CFLGL------LAVQADDI-- 331 (494)
Q Consensus 283 ~~l------~~e~G-------Gm~-------eaL~~LY~iTGd~ryL~lA~~F~~~---~~~~~------la~~~d~l-- 331 (494)
... ..|++ |.- -+|.+||+.+|+-.||+.|.++.+. -|++- .+.+.|..
T Consensus 553 ~scY~ga~g~ve~~n~~~~~~~FldDYAFlI~gLLDlYea~~~~e~LkwA~~LQdtqdklFWdgggYF~Se~~~~~v~vR 632 (786)
T KOG2244|consen 553 GSCYDGASGRVEHSNRPSKAPAFLDDYAFLISGLLDLYEAGGGIEWLKWAIKLQDTQDKLFWDGGGYFISEKTDEDVSVR 632 (786)
T ss_pred cccccCCCcceeccCCccccchhhhhHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHheecCCceeeeeccCCCccee
Confidence 000 01111 222 3899999999999999999887542 22221 11111111
Q ss_pred ---------CCCcccchHHHHHHHHHHHHHhCChhHHHHHHHHHHHHh
Q 011051 332 ---------SGFHANTHIPVVIGSQMRYEVTGDPLYKVTGTFFMDIVN 370 (494)
Q Consensus 332 ---------~~~HAnt~ip~~~G~a~~y~~TGD~~yl~a~~~~w~~v~ 370 (494)
|..-.++.. -+.++|-+++.+.|++.|..+.....
T Consensus 633 lkeDhDGAEPs~nSVsah----NLvrL~~~~~~e~yl~ka~~ll~~fs 676 (786)
T KOG2244|consen 633 LKEDHDGAEPSGNSVSAH----NLVRLASIVAAESYLNKAHRLLAVFS 676 (786)
T ss_pred eccccCCCCCCccchhhh----hHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 111222222 24477888899999999998877544
No 44
>PLN02175 endoglucanase
Probab=85.79 E-value=22 Score=39.30 Aligned_cols=126 Identities=12% Similarity=0.057 Sum_probs=66.3
Q ss_pred hHHHHHHHHHHHHHHHhhhCCCcccccC-----CchhHhhhhhcCCCCcccc----------hHHHHHHHHHHHHHHcCC
Q 011051 187 TLKEKMTAVVSALSECQNKMGSGYLSAF-----PSEQFDRFEALKPVWAPYY----------TIHKILAGLLDQYTFADN 251 (494)
Q Consensus 187 ~L~~k~d~~Vd~l~~~Q~~~~dGYL~~~-----p~~~~~~l~~~~~~W~p~Y----------~~hkl~~GLvd~y~~tG~ 251 (494)
.++..+..-+|.|.+||...+++...-. +...|.+-+..+. =-|.| ..+.+-++|-+++++-.+
T Consensus 109 ~~l~~lkw~~Dyllk~~~~~~g~vy~qVG~~~~Dh~~W~~PE~~~~-~R~~~~is~~~PGSd~aae~AAALAaaS~vfk~ 187 (484)
T PLN02175 109 NARVNIRWATDYLLKCARATPGKLYVGVGDPNVDHKCWERPEDMDT-PRTVYSVSPSNPGSDVAAETAAALAAASMVFRK 187 (484)
T ss_pred HHHHHHHHHHHHHHhCcCCCCCeEEEEeCCCCCCcccCCChhHccC-ccceEecCCCCCccHHHHHHHHHHHHHHHHhcc
Confidence 3445566678889999963223322111 1123332222110 01222 223455566666666654
Q ss_pred ------hhHHHHHHHHHHHHHHhhcccccccchhhhhhhhcccccchH----HHHHHHHHhcCChhHHHHHhhh
Q 011051 252 ------TQALKMTKWMVEYFYNRVQNVITKYSVERHWNSLNEETGGMN----DVLYRLYTITQDPKHLLLAHLF 315 (494)
Q Consensus 252 ------~kaL~ia~r~aD~~~~~~~~~~~k~~~~~~~~~l~~e~GGm~----eaL~~LY~iTGd~ryL~lA~~F 315 (494)
.+.|+.|+++-+|..+.-+......+ ......-...+|.. .+-++||+.|||++||+.++.+
T Consensus 188 ~D~~YA~~lL~~Ak~ly~fA~~~~g~y~~~~~--~~~~~~Y~s~s~y~DEl~WAAawLY~ATgd~~Yl~~~~~~ 259 (484)
T PLN02175 188 VDSKYSRLLLATAKKVMQFAIQYRGAYSDSLS--SSVCPFYCSYSGYKDELMWGASWLLRATNDPYYANFIKSL 259 (484)
T ss_pred cCHHHHHHHHHHHHHHHHHHHhCCCCcccCcc--ccccCccccCCCccHHHHHHHHHHHHHhCCHHHHHHHHHc
Confidence 36899999999998875332110000 00000111223333 3788999999999999877654
No 45
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=85.34 E-value=19 Score=37.11 Aligned_cols=90 Identities=14% Similarity=0.107 Sum_probs=63.4
Q ss_pred chhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhCCCccccc-CCchhHhhhhhcCCCCccc-----chHHHHHHH
Q 011051 168 FVGHYLSASAHMWASTHNVTLKEKMTAVVSALSECQNKMGSGYLSA-FPSEQFDRFEALKPVWAPY-----YTIHKILAG 241 (494)
Q Consensus 168 ~~G~~LsA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~~-~p~~~~~~l~~~~~~W~p~-----Y~~hkl~~G 241 (494)
...-=|.=++.+|..++|+..++.+.+-|+.|.++|- ++|=... ||.. +.+... -.+-++|+.
T Consensus 45 aT~~e~~fLa~~y~~t~d~~y~~A~~rgld~LL~aQy--pnGGWPQf~p~~---------~~Y~~~ITfND~am~~vl~l 113 (290)
T TIGR02474 45 ATVTEIRYLAQVYQQEKNAKYRDAARKGIEYLLKAQY--PNGGWPQFYPLK---------GGYSDAITYNDNAMVNVLTL 113 (290)
T ss_pred cHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhhC--CCCCcCcccCCc---------CCcccccccCcHHHHHHHHH
Confidence 3455567778889999999999999999999999999 6542222 2321 111111 114578888
Q ss_pred HHHHHHHcCC---------hhHHHHHHHHHHHHHHh
Q 011051 242 LLDQYTFADN---------TQALKMTKWMVEYFYNR 268 (494)
Q Consensus 242 Lvd~y~~tG~---------~kaL~ia~r~aD~~~~~ 268 (494)
|.+.++.-++ +++..++.|-.||+.+.
T Consensus 114 L~~i~~~~~~~~~~~~~~~~r~~~Ai~Rgid~ILkt 149 (290)
T TIGR02474 114 LDDIANGKDPFDVFPDSTRTRAKTAVTKGIECILKT 149 (290)
T ss_pred HHHHHhccCCcccccHHHHHHHHHHHHHHHHHHHHh
Confidence 8887764442 68889999999998764
No 46
>PLN00119 endoglucanase
Probab=84.31 E-value=13 Score=41.09 Aligned_cols=126 Identities=12% Similarity=-0.035 Sum_probs=69.3
Q ss_pred ChhHHHHHHHHHHHHHHHhhhCCCccccc------CCchhHhhhhhcC-CCCc-------c-cchHHHHHHHHHHHHHHc
Q 011051 185 NVTLKEKMTAVVSALSECQNKMGSGYLSA------FPSEQFDRFEALK-PVWA-------P-YYTIHKILAGLLDQYTFA 249 (494)
Q Consensus 185 D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~~------~p~~~~~~l~~~~-~~W~-------p-~Y~~hkl~~GLvd~y~~t 249 (494)
-+.+++.+..-.|.|.+||. .+|.|-. .....|.+-++.. .+.. | --..+..-++|-.++++-
T Consensus 116 ~~~~lde~kw~~Dyllk~~~--~~~~~y~qVgdg~~DH~~W~~Pe~~~~~R~~y~i~~~~pgSd~a~~~AAAlA~as~vf 193 (489)
T PLN00119 116 LGNALAALKWATDYLIKAHP--QPNVLYGQVGDGNSDHACWMRPEDMTTPRTSYRIDAQHPGSDLAGETAAAMAAASIAF 193 (489)
T ss_pred cHHHHHHHHHHHHHHHHhcC--CCCeEEEEeccCCCcccccCChhhCCCcCceeecCCCCCchHHHHHHHHHHHHHHHHc
Confidence 35677888889999999997 4443321 0112343222111 1110 1 012456666666777766
Q ss_pred CC------hhHHHHHHHHHHHHHHhhcccccccchhhhhhhhccccc---chHHHHHHHHHhcCChhHHHHHhhh
Q 011051 250 DN------TQALKMTKWMVEYFYNRVQNVITKYSVERHWNSLNEETG---GMNDVLYRLYTITQDPKHLLLAHLF 315 (494)
Q Consensus 250 G~------~kaL~ia~r~aD~~~~~~~~~~~k~~~~~~~~~l~~e~G---Gm~eaL~~LY~iTGd~ryL~lA~~F 315 (494)
.+ +++|+.|+++-+|..+.-+.. . .+........ ...+ .+..+-++||+.|||+.||+.++..
T Consensus 194 k~~D~~yA~~lL~~Ak~~y~fA~~~~g~y-~-~~~~~~~g~Y-~ss~~~DEl~WAAawLY~aTgd~~Yl~~~~~~ 265 (489)
T PLN00119 194 APSDPAYASILIGHAKDLFEFAKAHPGLY-Q-NSIPNAGGFY-ASSGYEDELLWAAAWLHRATNDQTYLDYLTQA 265 (489)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhCCCcc-c-CCCCCCCCCC-CCCchhhHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 65 468999999999987742211 0 0000000000 0101 1224788999999999999977644
No 47
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=83.82 E-value=1.2 Score=37.85 Aligned_cols=92 Identities=13% Similarity=0.036 Sum_probs=34.7
Q ss_pred CCCCccCCCcCccccchhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhCCCcccccCCchhHhhhhhcCCCCccc
Q 011051 153 AYEGWEDPTCELRGHFVGHYLSASAHMWASTHNVTLKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFEALKPVWAPY 232 (494)
Q Consensus 153 ~~ggWe~~d~~lrGh~~G~~LsA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~~~p~~~~~~l~~~~~~W~p~ 232 (494)
+-|+|...- . .-.-..-+++.++...++++..+.|++.++.|.++|. +||-++..+.+ ..
T Consensus 14 ~dG~W~~~~---~--~~~~~t~~~~~al~~~~~~~~~~ai~ka~~~l~~~Q~--~dG~w~~~~~~-------------~~ 73 (109)
T PF13243_consen 14 PDGSWGYNW---G--SDVFVTAALILALAAAGDAAVDEAIKKAIDWLLSHQN--PDGGWGYSGGE-------------YV 73 (109)
T ss_dssp --------------------------------TS-SSBSSHHHHHHHHH-----TTS--S-TS---------------HH
T ss_pred ccccccccc---c--ccccccccccccccccCCCCcHHHHHHHHHHHHHhcC--CCCCCCCcCCC-------------CH
Confidence 456776431 1 1133444455555666788888999999999999999 89876643321 11
Q ss_pred chHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHh
Q 011051 233 YTIHKILAGLLDQYTFADNTQALKMTKWMVEYFYNR 268 (494)
Q Consensus 233 Y~~hkl~~GLvd~y~~tG~~kaL~ia~r~aD~~~~~ 268 (494)
++. ..++....+++...-.+.+.|-++|+.+.
T Consensus 74 ~~t----~~~~~~l~~~~~~~~~~~~~r~~~wi~~~ 105 (109)
T PF13243_consen 74 SMT----AAAIAALALAGVYPDDEAVERGLEWILSH 105 (109)
T ss_dssp HHH----HHHHHHHHHHHTT--HHHHHHHHHHHHHH
T ss_pred HHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Confidence 221 12222223334434556678888898765
No 48
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others. The 3D structure of the lantibiotic cyclase from L. lactis has been determined by X-ray crystallography to 2.5A resolution []. The globular structure is characterised by an all-alpha fold, in which an outer ring of helices envelops an inner toroid composed of 7 shorter, hydrophobic helices. This 7-fold hyrophobic periodicity has led several authors to claim various members of the family, including eukaryotic LanC-1 and GCR2, to be novel G protein-coupled receptors [, ]; some of these claims have since been corrected [, , ]. ; PDB: 3E6U_D 3E73_B 2G0D_A 2G02_A.
Probab=83.41 E-value=2.3 Score=43.40 Aligned_cols=133 Identities=20% Similarity=0.292 Sum_probs=78.4
Q ss_pred HHHHHHHHHH-HhcCChhHHHHHHHHHHHHHHHhhhCCCcccccCCchhHhhhhhcCCCCcccchHHHHHHHHHHHHHHc
Q 011051 171 HYLSASAHMW-ASTHNVTLKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFEALKPVWAPYYTIHKILAGLLDQYTFA 249 (494)
Q Consensus 171 ~~LsA~a~~~-a~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~~~p~~~~~~l~~~~~~W~p~Y~~hkl~~GLvd~y~~t 249 (494)
=.+-+++.++ ..+++++.++.+.++++.+.+.+....++|......+. .. ...-|- |-.-=+..++...++..
T Consensus 171 Gi~~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~WC--~G~~Gi~~~~~~~~~~~ 244 (355)
T PF05147_consen 171 GILYALLRLYKKGTKDPEYLKLIEQILNFLLKHFNTDDGGWPDNRNNSN---YK-SRPSWC--YGSPGILLALLKAYKIL 244 (355)
T ss_dssp HHHHHHCHCCHHT--HHHHHHCHHHHHHHHHHC--TGCCT--SECTHHH---HH-C--SSS--SSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhhcccCchhHHHHHHHHHHHHHHhcCcccCCCCCCCCccc---cc-cccccc--cCcHHHHHHHHHHHHhh
Confidence 3444444455 36778999999999999999888543555444322211 00 012232 22223566678889999
Q ss_pred CChhHHHHHHHHHHHHHHhhcccccccchhhhhhhhcccccchHHHHHHHHHhcCChhHHHHHhhhcc
Q 011051 250 DNTQALKMTKWMVEYFYNRVQNVITKYSVERHWNSLNEETGGMNDVLYRLYTITQDPKHLLLAHLFDK 317 (494)
Q Consensus 250 G~~kaL~ia~r~aD~~~~~~~~~~~k~~~~~~~~~l~~e~GGm~eaL~~LY~iTGd~ryL~lA~~F~~ 317 (494)
+++...+.+.+.++.+.+.-.. .. + ..+..+.-|.-+.+..+|+.|++++|.+.|+++.+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~-~~--~-----~~lCHG~aG~~~~l~~~~~~~~~~~~~~~~~~~~~ 304 (355)
T PF05147_consen 245 DDEEYDEEAEQALESILQKGLF-LN--N-----PSLCHGTAGILEILLDLYKYTGDEEYKELANKLIQ 304 (355)
T ss_dssp T-HHHHHHHHHHHHHHHHH-TC-TT--S-----S-STTSHHHHHHHHHHHHHHH--HCCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHcccc-CC--C-----CceeCchHHhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999998888877653100 00 0 11222334777899999999999999999988843
No 49
>PLN02340 endoglucanase
Probab=83.08 E-value=13 Score=42.15 Aligned_cols=124 Identities=12% Similarity=-0.046 Sum_probs=69.7
Q ss_pred ChhHHHHHHHHHHHHHHHhhhCCCccccc------CCchhHhhhhhcCCCCcccc----------hHHHHHHHHHHHHHH
Q 011051 185 NVTLKEKMTAVVSALSECQNKMGSGYLSA------FPSEQFDRFEALKPVWAPYY----------TIHKILAGLLDQYTF 248 (494)
Q Consensus 185 D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~~------~p~~~~~~l~~~~~~W~p~Y----------~~hkl~~GLvd~y~~ 248 (494)
-+.+++.+..-+|.+.+||. +++-|-. .....|..-++.+.. -+.| ..+.+-++|.+++++
T Consensus 115 ~~~~ldeirw~~Dyllk~~~--~~~~~~~qVGdg~~DH~~W~~PE~~~~~-R~~y~i~~~~pgSd~a~e~AAAlAaas~v 191 (614)
T PLN02340 115 MQRTLWAIRWGTDYFIKAHT--QPNVLWGQVGDGDSDHYCWERAEDMTTP-RTAYKLDQNHPGSDLAGETAAALAAASKA 191 (614)
T ss_pred hHHHHHHHHHHHHHHHHhcC--CCCeEEEEeCCCCcccccCCChhhcCCc-CceeecCCCCCccHHHHHHHHHHHHHHHh
Confidence 46788888889999999987 4332211 011233322221100 0112 224555666666666
Q ss_pred cCC------hhHHHHHHHHHHHHHHhhcccccccchhhhhhhhcccccchH----HHHHHHHHhcCChhHHHHHhhh
Q 011051 249 ADN------TQALKMTKWMVEYFYNRVQNVITKYSVERHWNSLNEETGGMN----DVLYRLYTITQDPKHLLLAHLF 315 (494)
Q Consensus 249 tG~------~kaL~ia~r~aD~~~~~~~~~~~k~~~~~~~~~l~~e~GGm~----eaL~~LY~iTGd~ryL~lA~~F 315 (494)
-.+ ++.|+.|+++.+|..+.-+..-+ +...-.... .. .|.. .+-++||+.|||++||+-+...
T Consensus 192 fk~~D~~YA~~lL~~Ak~ly~fA~~~~g~y~~--s~~~a~~~Y-~s-s~~~DEl~WAAawLy~ATgd~~Yl~~~~~~ 264 (614)
T PLN02340 192 FKPYNSSYSDLLLVHAKQLFSFADKFRGLYDD--SIQNAKKFY-TS-SGYSDELLWAAAWLYRATGDEYYLKYVVDN 264 (614)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHhCCCCccC--CCCccccCC-CC-CCcchHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 554 36899999999998875332100 000000000 01 2222 3788999999999999988654
No 50
>PLN02345 endoglucanase
Probab=80.29 E-value=10 Score=41.71 Aligned_cols=122 Identities=13% Similarity=0.064 Sum_probs=69.3
Q ss_pred ChhHHHHHHHHHHHHHHHhhhCCCccccc-C-----CchhHhhhhhcCCCCcccch----------HHHHHHHHHHHHHH
Q 011051 185 NVTLKEKMTAVVSALSECQNKMGSGYLSA-F-----PSEQFDRFEALKPVWAPYYT----------IHKILAGLLDQYTF 248 (494)
Q Consensus 185 D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~~-~-----p~~~~~~l~~~~~~W~p~Y~----------~hkl~~GLvd~y~~ 248 (494)
-+.+++.|..-+|.|.+||. +||-+-. . +...|..-+... .--|.|- .+..-++|..++.+
T Consensus 81 ~~~~ldelkw~~Dyllk~~~--~~~~~y~qVg~~~~Dh~~W~~Pe~~~-~~R~~~~~~~~~pgsd~a~~~AAAlA~as~v 157 (469)
T PLN02345 81 LDSAKDSLKWITDYLINAHP--SENVLYIQVGDPKLDHKCWERPETMD-EKRPLTKINTSSPGSEVAAETAAAMAAASLV 157 (469)
T ss_pred hHHHHHHHhHHHHHHHHhcC--CCCeEEEEecCCCCCcccCCChhhcC-CcceEEecCCCCCCcHHHHHHHHHHHHHHHH
Confidence 36788888899999999998 5553321 1 111232222111 1113332 24555666677776
Q ss_pred cCC------hhHHHHHHHHHHHHHHhhcccccccchhhhhhhhcccccch----HHHHHHHHHhcCChhHHHHHh
Q 011051 249 ADN------TQALKMTKWMVEYFYNRVQNVITKYSVERHWNSLNEETGGM----NDVLYRLYTITQDPKHLLLAH 313 (494)
Q Consensus 249 tG~------~kaL~ia~r~aD~~~~~~~~~~~k~~~~~~~~~l~~e~GGm----~eaL~~LY~iTGd~ryL~lA~ 313 (494)
-.+ .++|+.|+++-+|..+.-+......+.. ... -.+ ++. ..+-++||+.|||++||+.+.
T Consensus 158 fk~~D~~YA~~lL~~Ak~ly~fa~~~~g~y~~~~~~~--~~~-Y~s-~~~~DEl~WAAawLy~ATgd~~Yl~~~~ 228 (469)
T PLN02345 158 FKSSDSTYSDTLLKHAKQLFNFADKYRGSYSESIPEV--QDY-YNS-TGYGDELLWAASWLYHATGDKTYLAYVT 228 (469)
T ss_pred hccCCHHHHHHHHHHHHHHHHHHHhCCCcccCCCCcc--CCC-CCC-cccccHHHHHHHHHHHHhCCHHHHHHHH
Confidence 665 4689999999999887522110000000 000 011 122 248889999999999999874
No 51
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=80.02 E-value=19 Score=37.11 Aligned_cols=126 Identities=12% Similarity=-0.046 Sum_probs=72.9
Q ss_pred HHHHHHHhcCChhHHHHHhhhcc-------cccchhhhhcCCCCCCCcccc--------hHHHHHHHHHHHHHhCC----
Q 011051 295 VLYRLYTITQDPKHLLLAHLFDK-------PCFLGLLAVQADDISGFHANT--------HIPVVIGSQMRYEVTGD---- 355 (494)
Q Consensus 295 aL~~LY~iTGd~ryL~lA~~F~~-------~~~~~~la~~~d~l~~~HAnt--------~ip~~~G~a~~y~~TGD---- 355 (494)
-|+++|+.|+|++|.+.+.+=.+ +.--+|. .+++.+ +-.. .+.++.-+.++++..++
T Consensus 52 fLa~~y~~t~d~~y~~A~~rgld~LL~aQypnGGWPQ---f~p~~~-~Y~~~ITfND~am~~vl~lL~~i~~~~~~~~~~ 127 (290)
T TIGR02474 52 YLAQVYQQEKNAKYRDAARKGIEYLLKAQYPNGGWPQ---FYPLKG-GYSDAITYNDNAMVNVLTLLDDIANGKDPFDVF 127 (290)
T ss_pred HHHHHHHhcCchhHHHHHHHHHHHHHhhhCCCCCcCc---ccCCcC-CcccccccCcHHHHHHHHHHHHHHhccCCcccc
Confidence 79999999999999998866432 1111110 111111 1122 34445555566654432
Q ss_pred -----hhHHHHHHHHHHHHhhcCceecc---cCCC--CCC-CC----CCCcccccCCCCccccchhhHHHHHHHHHhcc-
Q 011051 356 -----PLYKVTGTFFMDIVNASHGYATG---GTSA--GEF-WS----DPKRLASTLGTENEESCTTYNMLKVSRHLFRW- 419 (494)
Q Consensus 356 -----~~yl~a~~~~w~~v~~~~~y~TG---G~g~--~E~-f~----~~~~L~~~l~~~~~ETCas~n~lkl~~~L~~~- 419 (494)
++...|+++..+.|.+.+.-..| +.+. +|. +. -.+++|. -.+.||+..+..| ..+
T Consensus 128 ~~~~~~r~~~Ai~Rgid~ILktQ~~~gg~~t~Wg~Qyd~~tl~Pa~AR~yE~pS---ls~~ES~~iv~~L------M~~~ 198 (290)
T TIGR02474 128 PDSTRTRAKTAVTKGIECILKTQVVQNGKLTVWCQQHDALTLQPKKARAYELPS---LSSSESVGILLFL------MTQP 198 (290)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhcccCCcCCchhhccCccccccccccccCCcc---cccccHHHHHHHH------hcCC
Confidence 68899999999999987765533 3332 332 22 2344443 2456666554443 333
Q ss_pred CCCCchHHHHHHHH
Q 011051 420 TKEMVYADYYERAL 433 (494)
Q Consensus 420 tgd~~YaD~~Er~L 433 (494)
.+++++.+-+|-++
T Consensus 199 ~ps~~i~~ai~~A~ 212 (290)
T TIGR02474 199 NPSAEIKEAIRAGV 212 (290)
T ss_pred CCCHHHHHHHHHHH
Confidence 47888888877664
No 52
>PF00759 Glyco_hydro_9: Glycosyl hydrolase family 9; InterPro: IPR001701 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 9 GH9 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family E. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1RQ5_A 1CLC_A 3H7L_B 1K72_B 1G87_B 1GA2_A 1KFG_A 1UT9_A 2YIK_A 3RX5_A ....
Probab=79.75 E-value=17 Score=39.06 Aligned_cols=189 Identities=13% Similarity=0.090 Sum_probs=91.5
Q ss_pred hhHHHHHHHHHHHhc--CChhHHHHHHHHHHHHHHHhhhCCCcccccCCchhHhhhhhcCCCCcccch----HHHHHHHH
Q 011051 169 VGHYLSASAHMWAST--HNVTLKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFEALKPVWAPYYT----IHKILAGL 242 (494)
Q Consensus 169 ~G~~LsA~a~~~a~t--~D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~~~p~~~~~~l~~~~~~W~p~Y~----~hkl~~GL 242 (494)
.+..--|+|.++..- -|+++.++.-+....+-+--++.++-|....+. .....|+ ...++-|+
T Consensus 156 ~~~~AAalA~As~v~k~~d~~~A~~~L~~A~~~~~~a~~~~~~~~~~~~~-----------~~~~~Y~~~~~~De~~wAA 224 (444)
T PF00759_consen 156 TAEFAAALAAASRVFKDFDPAYAAQCLKAAKEAYAFAKKNPGVYSDNPQP-----------NGGGFYNSSGYEDELAWAA 224 (444)
T ss_dssp HHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHSTTHGGGTSTC-----------TTTTTSHCS-SHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhCCCcccCCccc-----------ccCCcccCCCcccHHHHHH
Confidence 344444444444432 367766555544444443333334444332211 1112222 23467789
Q ss_pred HHHHHHcCChhHHHHHHHHHHHHHHhhcccccccchhhhhhhhcccccchHHHHHHHHHhcC--------ChhHHHHHhh
Q 011051 243 LDQYTFADNTQALKMTKWMVEYFYNRVQNVITKYSVERHWNSLNEETGGMNDVLYRLYTITQ--------DPKHLLLAHL 314 (494)
Q Consensus 243 vd~y~~tG~~kaL~ia~r~aD~~~~~~~~~~~k~~~~~~~~~l~~e~GGm~eaL~~LY~iTG--------d~ryL~lA~~ 314 (494)
+..|++||+++.++.+.+..+-+...... .+ ..-.|.. . ...+.+.|...+- .++|+..++.
T Consensus 225 ~~Ly~aTg~~~Y~~~a~~~~~~~~~~~~~--~~--~~~~W~~---~---~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~ 294 (444)
T PF00759_consen 225 AELYRATGDESYLDYAKEYYDDLEASQWS--NE--WSFSWDN---K---AAGAQLLLAKLTNDDPSRDAAREQYKSAADK 294 (444)
T ss_dssp HHHHHHHT-HHHHHHHHHHCCTSSBSTTS--SS--SSSCTTB---S---HHHHHHHHHHHHCCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHhHHhhcccccc--cc--cccchhh---h---hhhhhHHHHhcccchhhhHHHHHHHHHHHHH
Confidence 99999999998888776665432211000 00 0001110 0 1124444555541 2455555555
Q ss_pred hcccccchh---hhhcCC---CCCCCcccchHHHHHHHHHHHH---HhCChhHHHHHHHHHHHHhhc----Cceecc
Q 011051 315 FDKPCFLGL---LAVQAD---DISGFHANTHIPVVIGSQMRYE---VTGDPLYKVTGTFFMDIVNAS----HGYATG 378 (494)
Q Consensus 315 F~~~~~~~~---la~~~d---~l~~~HAnt~ip~~~G~a~~y~---~TGD~~yl~a~~~~w~~v~~~----~~y~TG 378 (494)
+.....-.+ ...... .....-.++......-++.+|. .+++++|++.+....+.|... .+|+||
T Consensus 295 ~~~~~~~~~~~~~~~~~~g~~~~~~WGs~~~~~~~a~l~~~~~~~~~~~~~~y~~~a~~qldyiLG~Np~~~SyV~G 371 (444)
T PF00759_consen 295 FLNKWLNDGYGSVPYTPGGLAWIYEWGSNRYAANAAFLALAYAKYDLTGDQEYRDFAQSQLDYILGRNPFGQSYVTG 371 (444)
T ss_dssp HHHHHHHSTTTBSEBCTTSSBESESTTHHHHHHHHHHHHHHHHHTCHCHHHHHHHHHHHHHHHHHTTSTT--BSBTT
T ss_pred HHHHHhhccCCCcccCccccccccCCCccHHHHHHHHHHHHHHhcccCChHHHHHHHHHHhhhhcCcCCCCceeeec
Confidence 533221100 000000 0011122344444455566777 999999999999999999865 377776
No 53
>PLN02613 endoglucanase
Probab=79.43 E-value=23 Score=39.20 Aligned_cols=121 Identities=14% Similarity=0.120 Sum_probs=69.0
Q ss_pred CChhHHHHHHHHHHHHHHHhhh-------CCCcccccCCchhHhhhhhcCCCCcccch----------HHHHHHHHHHHH
Q 011051 184 HNVTLKEKMTAVVSALSECQNK-------MGSGYLSAFPSEQFDRFEALKPVWAPYYT----------IHKILAGLLDQY 246 (494)
Q Consensus 184 ~D~~L~~k~d~~Vd~l~~~Q~~-------~~dGYL~~~p~~~~~~l~~~~~~W~p~Y~----------~hkl~~GLvd~y 246 (494)
+.+.+++.+..-.|.|.+||.. .+||-.. ...|..-+... .=-+.|. .+..-++|-.++
T Consensus 110 ~~~d~ldeikw~lD~llkm~~~~~~~~~QVGdg~~d---H~~W~~Pe~~~-~~R~~~~~t~~~pgTd~a~~~AAALAaas 185 (498)
T PLN02613 110 QLGYLRSAIRWGTDFILRAHTSPTTLYTQVGDGNAD---HQCWERPEDMD-TPRTLYKITSSSPGSEAAGEAAAALAAAS 185 (498)
T ss_pred CchHHHHHHHHHHHHHHHhccCCCeEEEEeCCCCcc---ccccCCccccC-CCCeeEecCCCCCccHHHHHHHHHHHHHH
Confidence 4578888899999999999862 0333211 11232111110 0012232 234556666677
Q ss_pred HHcCC------hhHHHHHHHHHHHHHHhhcccccccchhhhhhhhcccccchH----HHHHHHHHhcCChhHHHHHhhh
Q 011051 247 TFADN------TQALKMTKWMVEYFYNRVQNVITKYSVERHWNSLNEETGGMN----DVLYRLYTITQDPKHLLLAHLF 315 (494)
Q Consensus 247 ~~tG~------~kaL~ia~r~aD~~~~~~~~~~~k~~~~~~~~~l~~e~GGm~----eaL~~LY~iTGd~ryL~lA~~F 315 (494)
++-.+ ++.|+.|+++-+|..+.-+. .... ...-...+|.. .+-++||+.|||++||+.++..
T Consensus 186 ~vfk~~D~~yA~~~L~~Ak~ly~~a~~~~g~----y~~~---~~~y~s~s~~~DEl~WAAawLy~aTGd~~Yl~~~~~~ 257 (498)
T PLN02613 186 LVFKDVDSSYSSKLLNHARSLFEFADKYRGS----YQAS---CPFYCSYSGYQDELLWAAAWLYKATGEKKYLNYVISN 257 (498)
T ss_pred HhcccCCHHHHHHHHHHHHHHHHHHHhCCCC----cCCC---CCcccccCccchHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 76665 36899999999998765221 1100 00001112222 3778999999999999977654
No 54
>PLN02420 endoglucanase
Probab=79.13 E-value=22 Score=39.72 Aligned_cols=126 Identities=10% Similarity=-0.005 Sum_probs=67.2
Q ss_pred CChhHHHHHHHHHHHHHHHhhhCCCcccc-cC-----CchhHhhhhhcC-CCCcccch----------HHHHHHHHHHHH
Q 011051 184 HNVTLKEKMTAVVSALSECQNKMGSGYLS-AF-----PSEQFDRFEALK-PVWAPYYT----------IHKILAGLLDQY 246 (494)
Q Consensus 184 ~D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~-~~-----p~~~~~~l~~~~-~~W~p~Y~----------~hkl~~GLvd~y 246 (494)
+-+.+++.+..-+|.|.+||. .++-+- -. ....|..-+..+ .+ |.|. .+..-++|-.++
T Consensus 125 ~~~d~Ldeikw~lD~llk~~~--~~~~~~~qvGdg~~DH~~w~~Pe~~~~~R--~~~~i~~~~pgsd~aa~~AAALA~AS 200 (525)
T PLN02420 125 ELSHALEAIKWGTDYFIKAHT--SPNVLWAEVGDGDTDHYCWQRPEDMTTSR--RAFKIDENNPGSDIAGETAAAMAAAS 200 (525)
T ss_pred CcHHHHHHHHHHHHHHHHhCc--CCCceEEeeCCCCcccccccChhhccccC--ceEEecCCCCccHHHHHHHHHHHHHH
Confidence 357888889999999999997 332221 00 001121111110 11 1221 244555566666
Q ss_pred HHcCC------hhHHHHHHHHHHHHHHhhcccccccchhhhhhhhccccc---chHHHHHHHHHhcCChhHHHHHhhh
Q 011051 247 TFADN------TQALKMTKWMVEYFYNRVQNVITKYSVERHWNSLNEETG---GMNDVLYRLYTITQDPKHLLLAHLF 315 (494)
Q Consensus 247 ~~tG~------~kaL~ia~r~aD~~~~~~~~~~~k~~~~~~~~~l~~e~G---Gm~eaL~~LY~iTGd~ryL~lA~~F 315 (494)
++-.+ ++.|+.|+++-+|..+.-+.. .. +............+ .+..+-++||+.|||++||+.+...
T Consensus 201 ~vfk~~D~~YA~~~L~~Ak~ly~fA~~~~g~y-~~-~~~~~~g~Y~s~s~y~DEl~WAAawLY~ATgd~~Yl~~a~~~ 276 (525)
T PLN02420 201 IVFRSTNPHYSHLLLHHAQQLFEFGDKYRGKY-DE-SLKVVKSYYASVSGYMDELLWGATWLYRATDNEHYMSYVVDM 276 (525)
T ss_pred HhcccCCHHHHHHHHHHHHHHHHHHHhcCCcc-CC-CCcccCCCCCCcCcccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 66654 358999999988887642211 00 00000000000011 1123788999999999999988654
No 55
>PLN03009 cellulase
Probab=78.37 E-value=18 Score=39.97 Aligned_cols=128 Identities=9% Similarity=-0.061 Sum_probs=69.8
Q ss_pred CChhHHHHHHHHHHHHHHHhhhCCCccccc-C-----CchhHhhhhhcCCCCcccch----------HHHHHHHHHHHHH
Q 011051 184 HNVTLKEKMTAVVSALSECQNKMGSGYLSA-F-----PSEQFDRFEALKPVWAPYYT----------IHKILAGLLDQYT 247 (494)
Q Consensus 184 ~D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~~-~-----p~~~~~~l~~~~~~W~p~Y~----------~hkl~~GLvd~y~ 247 (494)
+-+.++..+..-+|.|.+||. .+|-+-. . +...|..-+..+ .=-+.|. .+..-++|-.+++
T Consensus 111 ~~~diLdeikw~~D~llkm~~--~~~~~y~qVg~~~~Dh~~W~~Pe~~~-~~R~~~~is~~~p~sd~a~~~AAalA~as~ 187 (495)
T PLN03009 111 ELRNSLVAIRWATDYLLKTVS--QPNRIFVQVGDPIADHNCWERPEDMD-TPRTVYAVNAPNPASDVAGETAAALAASSM 187 (495)
T ss_pred ccHHHHHHHHHHHHHHHHccc--CcCeEEEEeCCCCCCcccCcChhhcC-CCCeEEEecCCCCccHHHHHHHHHHHHHHH
Confidence 346677888889999999987 4433221 1 112232211111 0013342 3566677777777
Q ss_pred HcCC------hhHHHHHHHHHHHHHHhhcccccccchhhhhhhhcccccchH----HHHHHHHHhcCChhHHHHHhh
Q 011051 248 FADN------TQALKMTKWMVEYFYNRVQNVITKYSVERHWNSLNEETGGMN----DVLYRLYTITQDPKHLLLAHL 314 (494)
Q Consensus 248 ~tG~------~kaL~ia~r~aD~~~~~~~~~~~k~~~~~~~~~l~~e~GGm~----eaL~~LY~iTGd~ryL~lA~~ 314 (494)
+-.+ ++.|+.|+++-+|..+.-+..........-....-....|.. .+-++||+.|||++||+-++.
T Consensus 188 vfk~~D~~YA~~ll~~Ak~ly~~a~~~~g~y~~~~~~~~g~~~~Y~~~s~~~DE~~WAAawLy~aTgd~~Yl~~~~~ 264 (495)
T PLN03009 188 AFRSSDPGYSETLLRNAIKTFQFADMYRGAYSDNDDIKDGVCPFYCDFDGYQDELLWGAAWLRRASGDDSYLNYIEN 264 (495)
T ss_pred hccccCHHHHHHHHHHHHHHHHHHHHcCCCccCCccccCccccCcCCcccccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 7664 358899999999987653221000000000000000111122 378899999999999998754
No 56
>PF05592 Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; InterPro: IPR008902 This entry consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria [].; PDB: 2OKX_B 3CIH_A.
Probab=76.36 E-value=27 Score=38.16 Aligned_cols=123 Identities=15% Similarity=0.154 Sum_probs=68.8
Q ss_pred HhcCChhHHHHHHHHHHHHHHHhhhCCCccccc-CCchhHhhhhhcCCCCcccchHHHHHHHHHHHHHHcCChhHH----
Q 011051 181 ASTHNVTLKEKMTAVVSALSECQNKMGSGYLSA-FPSEQFDRFEALKPVWAPYYTIHKILAGLLDQYTFADNTQAL---- 255 (494)
Q Consensus 181 a~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~~-~p~~~~~~l~~~~~~W~p~Y~~hkl~~GLvd~y~~tG~~kaL---- 255 (494)
...+|.+| +.+.++.+...|. +||.+.. +|.... ...-.|-|.+ ..+..+-++|+++||.+++
T Consensus 163 ~~~~~~~l---~~~~l~~~~~~q~--~~G~~p~~~P~~~~------~~~~~~~w~l-~~i~~~~~~y~~tGD~~~l~~~~ 230 (509)
T PF05592_consen 163 YSFGDAAL---YRKWLRDFADSQR--PDGLLPSVAPSYGG------GGFGIPDWSL-AWIIIPWDYYLYTGDREFLEEYY 230 (509)
T ss_dssp CCT--HHH---HHHHHHHHHGGTT--TSTT-SSBSS---S------SGGGBHHHHH-HHHHHHHHHHHHHT-HHHHHHHH
T ss_pred HhCCcHHH---HHHHHHHHHHhhc--ccCCceEEecccCC------CCCCCccHHH-HHHHHHHHHHHHhCCHHHHHHHH
Confidence 34556554 6667888888999 8998875 354210 0011244544 3567788999999998766
Q ss_pred HHHHHHHHHHHHhhccc---ccccchhhhhh----hhccccc----------chHHHHHHHHHhcCCh----hHHHHHhh
Q 011051 256 KMTKWMVEYFYNRVQNV---ITKYSVERHWN----SLNEETG----------GMNDVLYRLYTITQDP----KHLLLAHL 314 (494)
Q Consensus 256 ~ia~r~aD~~~~~~~~~---~~k~~~~~~~~----~l~~e~G----------Gm~eaL~~LY~iTGd~----ryL~lA~~ 314 (494)
+.++++.||+.....+. +....... |. ......+ .....+.+|.++.|++ +|.++|+.
T Consensus 231 ~~~~~~l~~~~~~~~~~~~~~~~~~~~D-W~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~lA~~lg~~~~a~~y~~~a~~ 309 (509)
T PF05592_consen 231 PAMKRYLDYLERRVDDGLDGLPGWGFGD-WLAPGNDGDGPTPGATITNALYYYALRAAAELAEALGKDEDAAEYRARAER 309 (509)
T ss_dssp HHHHHHHHHHHTTB-TSSB-CCSB--S--SS----TT---SCCEEHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCccccCCCCCceee-cCCccCcccccchHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 58889999988876541 11111111 11 0000011 1114788999999984 79998877
Q ss_pred hc
Q 011051 315 FD 316 (494)
Q Consensus 315 F~ 316 (494)
+.
T Consensus 310 lk 311 (509)
T PF05592_consen 310 LK 311 (509)
T ss_dssp HH
T ss_pred HH
Confidence 73
No 57
>PLN02308 endoglucanase
Probab=75.80 E-value=24 Score=39.09 Aligned_cols=123 Identities=7% Similarity=-0.081 Sum_probs=68.8
Q ss_pred hhHHHHHHHHHHHHHHHhhhCCCcccccC------CchhHhhhhhcC-CCCcccc----------hHHHHHHHHHHHHHH
Q 011051 186 VTLKEKMTAVVSALSECQNKMGSGYLSAF------PSEQFDRFEALK-PVWAPYY----------TIHKILAGLLDQYTF 248 (494)
Q Consensus 186 ~~L~~k~d~~Vd~l~~~Q~~~~dGYL~~~------p~~~~~~l~~~~-~~W~p~Y----------~~hkl~~GLvd~y~~ 248 (494)
+.+++.+..-+|.|.+||. +||-+-.- +...|..-+... .+ |.| ..+...++|-.++++
T Consensus 112 ~~~ldeikw~~D~llkm~~--~~~~vy~qVg~~~~dh~~W~~Pe~~~~~R--~~y~~~~~~pgSd~a~~~AAAlA~as~v 187 (492)
T PLN02308 112 ENAVKAVKWATDYLMKATA--IPNVVYVQVGDAYSDHNCWERPEDMDTLR--TVYKIDPSHPGSDVAGETAAALAAASIV 187 (492)
T ss_pred HHHHHHHHHHHHHHHHhcC--CCCeEEEEecCCCCCccCCCChhHcCCcc--eEEecCCCCCcchHHHHHHHHHHHHHHh
Confidence 3456677778999999998 66654311 112232222111 11 122 245666677777777
Q ss_pred cCC------hhHHHHHHHHHHHHHHhhcccccccchhhhhhhhcccccchH----HHHHHHHHhcCChhHHHHHhh
Q 011051 249 ADN------TQALKMTKWMVEYFYNRVQNVITKYSVERHWNSLNEETGGMN----DVLYRLYTITQDPKHLLLAHL 314 (494)
Q Consensus 249 tG~------~kaL~ia~r~aD~~~~~~~~~~~k~~~~~~~~~l~~e~GGm~----eaL~~LY~iTGd~ryL~lA~~ 314 (494)
-.+ ++.|+.|+++-+|..+.-+...... ........ ....|.. .+-++||+.|||++||+.++.
T Consensus 188 f~~~D~~YA~~lL~~Ak~ly~fa~~~~g~y~~~~-~~~~~~~Y-~~~s~~~DEl~WAAawLy~ATgd~~Yl~~~~~ 261 (492)
T PLN02308 188 FRKRDPAYSRLLLDRAVRVFAFADKYRGAYSSSL-HAAVCPFY-CDFNGYQDELLWGAAWLHKASRRREYREYIVK 261 (492)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHcCCcccCCC-CcccCCCc-CCCCcccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 663 4689999999999887522210000 00000000 0111222 378899999999999997755
No 58
>PLN02171 endoglucanase
Probab=70.43 E-value=53 Score=37.53 Aligned_cols=123 Identities=11% Similarity=0.003 Sum_probs=68.7
Q ss_pred hhHHHHHHHHHHHHHHHhhhCCCccccc-C-----CchhHhhhhhcC-CCCcccc----------hHHHHHHHHHHHHHH
Q 011051 186 VTLKEKMTAVVSALSECQNKMGSGYLSA-F-----PSEQFDRFEALK-PVWAPYY----------TIHKILAGLLDQYTF 248 (494)
Q Consensus 186 ~~L~~k~d~~Vd~l~~~Q~~~~dGYL~~-~-----p~~~~~~l~~~~-~~W~p~Y----------~~hkl~~GLvd~y~~ 248 (494)
+.+++.+..-.|.|.+||. ++|-|-. . ....|..-++.. ++ +.| ..+..-++|-+++++
T Consensus 116 ~~~Ldeikw~~Dyllk~~~--~~~~~y~qVgdg~~DH~~W~~Pe~~~~~R--~~y~i~~~~pgSd~a~e~AAAlAaaS~v 191 (629)
T PLN02171 116 GHAMDAVKWGTDYFIKAHP--EPNVLYGEVGDGDTDHYCWQRPEDMTTDR--QAYRIDPQNPGSDLAGETAAAMAAASIV 191 (629)
T ss_pred HHHHHHHHHHHHHHHHhcc--CCCeEEEEeCCCCccccCcCChhHccccc--eeEEecCCCCchHHHHHHHHHHHHHHHh
Confidence 4577778888999999997 4332211 0 001122221111 11 233 245666677777777
Q ss_pred cCC------hhHHHHHHHHHHHHHHhhcccccccchhhhhhhhcccccchH----HHHHHHHHhcCChhHHHHHhhh
Q 011051 249 ADN------TQALKMTKWMVEYFYNRVQNVITKYSVERHWNSLNEETGGMN----DVLYRLYTITQDPKHLLLAHLF 315 (494)
Q Consensus 249 tG~------~kaL~ia~r~aD~~~~~~~~~~~k~~~~~~~~~l~~e~GGm~----eaL~~LY~iTGd~ryL~lA~~F 315 (494)
-.+ +++|+.|+++-+|..+.-+.. . .+...-..... ...|.. .+-++||+.|||++||+-++..
T Consensus 192 fk~~D~~YA~~lL~~Ak~ly~fA~~~~g~y-~-~~~~~~~~~Y~-s~s~y~DEl~WAAawLy~ATgd~~Yl~~~~~~ 265 (629)
T PLN02171 192 FRRSNPGYANELLTHAKQLFDFADKYRGKY-D-SSITVAQKYYR-SVSGYGDELLWAAAWLYQATNNQYYLDYLGNN 265 (629)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHhCCCcc-c-CCCcccCCccC-CCCCccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 654 468999999999988752211 0 00000000011 111222 3888999999999999987654
No 59
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms]
Probab=70.04 E-value=18 Score=37.80 Aligned_cols=114 Identities=21% Similarity=0.223 Sum_probs=69.4
Q ss_pred hhHHHHHHHHHHHHHHh-hcccccccchhh--hhhhhc---ccccchHHHHHHHHHhcCChhHHHHHhhhccccc-chhh
Q 011051 252 TQALKMTKWMVEYFYNR-VQNVITKYSVER--HWNSLN---EETGGMNDVLYRLYTITQDPKHLLLAHLFDKPCF-LGLL 324 (494)
Q Consensus 252 ~kaL~ia~r~aD~~~~~-~~~~~~k~~~~~--~~~~l~---~e~GGm~eaL~~LY~iTGd~ryL~lA~~F~~~~~-~~~l 324 (494)
+..++.+++-.||+.+. |. .+..+... -...|. -+..|+.-.|++.|++-++++||+-|-.--+--+ .+-+
T Consensus 241 ~~~~~dVK~sldym~~~rfp--sGNyP~s~~~~~drLVhWcHGApGv~~~L~kAy~VF~Eekyl~aa~ecadvVW~rGlL 318 (403)
T KOG2787|consen 241 PALLKDVKGSLDYMIQNRFP--SGNYPSSEGNKRDRLVHWCHGAPGVAYTLAKAYQVFKEEKYLEAAMECADVVWKRGLL 318 (403)
T ss_pred hhHHHhhhhHHHHHHHccCC--CCCCCcccCCCcceeeeeccCCchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhh
Confidence 45688899999998765 32 12222111 001111 1334888899999999999999998866543221 1222
Q ss_pred hhcCCCCCCCcccchHHHHHHHHHHHHHhCChhHHHHHHHHHHHHhhc
Q 011051 325 AVQADDISGFHANTHIPVVIGSQMRYEVTGDPLYKVTGTFFMDIVNAS 372 (494)
Q Consensus 325 a~~~d~l~~~HAnt~ip~~~G~a~~y~~TGD~~yl~a~~~~w~~v~~~ 372 (494)
..|.-.--|.-.|. ++ +.-+|++|+|.+|+--|..|-..+.++
T Consensus 319 kkg~GichGvaGNa--Yv---FLsLyRLT~d~kYlyRA~kFae~lld~ 361 (403)
T KOG2787|consen 319 KKGVGICHGVAGNA--YV---FLSLYRLTGDMKYLYRAKKFAEWLLDY 361 (403)
T ss_pred hcCCcccccccCch--hh---hHhHHHHcCcHHHHHHHHHHHHHHHhh
Confidence 22221111111122 22 334899999999999999999998864
No 60
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=66.71 E-value=47 Score=34.01 Aligned_cols=145 Identities=15% Similarity=0.095 Sum_probs=75.9
Q ss_pred chHHHHHHHHHHHhcCcchhhHHHHHHhCCCCCCCCCCCccCCCcCc---cccchhHHHHHHHHHHHhcC--ChhHHHHH
Q 011051 118 HWRAQQTNLEYLLMLDVDSLVWSFQKTAGSPTAGKAYEGWEDPTCEL---RGHFVGHYLSASAHMWASTH--NVTLKEKM 192 (494)
Q Consensus 118 ~~~~~~~~~~~ll~~~~d~lL~nFr~~AGl~~~g~~~ggWe~~d~~l---rGh~~G~~LsA~a~~~a~t~--D~~L~~k~ 192 (494)
..+..++.++||+..+....-..+.+ .. +..+-|||....... ..-..+.-+.+++.+....+ +....+.+
T Consensus 44 ~~~~~~ka~~~l~~~q~~~~~~~~~~--~~--~~~~~Ggw~y~~~~~~~~~~~~Ta~~l~al~~~~~~~~~~~~~~~~~i 119 (348)
T cd02889 44 FDPALKKALEWLLKSQIRDNPDDWKV--KY--RHLRKGGWAFSTANQGYPDSDDTAEALKALLRLQKKPPDGKKVSRERL 119 (348)
T ss_pred cCHHHHHHHHHHHhcCCCCCCCchhh--cC--CCCCCCcCcccCcCCCCCCCCChHHHHHHHHHhhccCcccchhhHHHH
Confidence 34566777788876542211000100 00 113456776532110 01134666777766554442 46778899
Q ss_pred HHHHHHHHHHhhhCCCcccccCCch---hHhhhh---hcCCCC--cccchHHHHHHHHHHHHHHcCC--hhHHHHHHHHH
Q 011051 193 TAVVSALSECQNKMGSGYLSAFPSE---QFDRFE---ALKPVW--APYYTIHKILAGLLDQYTFADN--TQALKMTKWMV 262 (494)
Q Consensus 193 d~~Vd~l~~~Q~~~~dGYL~~~p~~---~~~~l~---~~~~~W--~p~Y~~hkl~~GLvd~y~~tG~--~kaL~ia~r~a 262 (494)
+..++.|.++|. +||-+..|... .|.... ..+..+ ....+.++.+.+|...-....+ ++..+.+.|.+
T Consensus 120 ~~a~~~L~~~Q~--~dG~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~i~~a~ 197 (348)
T cd02889 120 YDAVDWLLSMQN--SNGGFAAFEPDNTYKYLELIPEVDGDIMIDPPYVECTGSVLEALGLFGKLYPEHRREIDPAIRRAV 197 (348)
T ss_pred HHHHHHHHHhcc--CCCCEeeecCCccHHHHhcCchhhcCCccCCCCcchHHHHHHHHHHhhhcCCchHHHHHHHHHHHH
Confidence 999999999999 89988766321 121000 000011 1234456677777654433221 23446777888
Q ss_pred HHHHHh
Q 011051 263 EYFYNR 268 (494)
Q Consensus 263 D~~~~~ 268 (494)
+|+.+.
T Consensus 198 ~~L~~~ 203 (348)
T cd02889 198 KYLERE 203 (348)
T ss_pred HHHHHh
Confidence 887653
No 61
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=64.98 E-value=66 Score=36.56 Aligned_cols=98 Identities=14% Similarity=0.087 Sum_probs=55.6
Q ss_pred hhHHHHHHHHHHHhcC--ChhHHHHHHHHHHHHHHHhhhCCCcccccCCch---h-Hhhhhh----cC--CCCcccchHH
Q 011051 169 VGHYLSASAHMWASTH--NVTLKEKMTAVVSALSECQNKMGSGYLSAFPSE---Q-FDRFEA----LK--PVWAPYYTIH 236 (494)
Q Consensus 169 ~G~~LsA~a~~~a~t~--D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~~~p~~---~-~~~l~~----~~--~~W~p~Y~~h 236 (494)
.+.-|.|+..+....+ +..-.+.+++.|+.|.++|. +||-+.+|... . +.++.. ++ -...-.-+-.
T Consensus 377 Ta~~l~AL~~~~~~~~~~~~~~~~~i~~Av~wLl~~Qn--~dGgf~~y~~~~~~~~~~~~~p~e~~g~~~~d~~~~~~Ta 454 (634)
T cd02892 377 TAEALKALLRLQELPPFGEKVSRERLYDAVDWLLGMQN--SNGGFAAFEPDNTYHWLENLNPFEDFGDIMIDPPYVECTG 454 (634)
T ss_pred hHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHhccC--CCCCEeeecCCCchhhHhhcCchhhhcccccCCCCcchHH
Confidence 5777777766554432 45667899999999999999 89988877321 1 111100 00 0011112334
Q ss_pred HHHHHHHHHHHHcCC--hhHHHHHHHHHHHHHHh
Q 011051 237 KILAGLLDQYTFADN--TQALKMTKWMVEYFYNR 268 (494)
Q Consensus 237 kl~~GLvd~y~~tG~--~kaL~ia~r~aD~~~~~ 268 (494)
..+++|...-....+ .++.+.+.|.++|+.+.
T Consensus 455 ~~l~aL~~~~~~~~~~r~~i~~~i~rAv~~L~~~ 488 (634)
T cd02892 455 SVLEALGLFGKLYPGHRREIDPAIRRAVKYLLRE 488 (634)
T ss_pred HHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHc
Confidence 566666443221111 13446778888888764
No 62
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=64.66 E-value=34 Score=35.27 Aligned_cols=91 Identities=12% Similarity=0.104 Sum_probs=64.4
Q ss_pred chhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhCCCcccccCCchhHhhhhhcCCCCcccc-----hHHHHHHHH
Q 011051 168 FVGHYLSASAHMWASTHNVTLKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFEALKPVWAPYY-----TIHKILAGL 242 (494)
Q Consensus 168 ~~G~~LsA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~~~p~~~~~~l~~~~~~W~p~Y-----~~hkl~~GL 242 (494)
..-.=|.-++.+|..++|++.++-+.+-|+.|.++|-. ..||=.-||... .++..+ .|-.+|.=|
T Consensus 40 aT~~ei~fLa~~y~~t~d~~y~~A~~kgl~ylL~aQyp-nGGWPQ~yP~~~---------~Y~~~ITfNDdam~~vl~lL 109 (289)
T PF09492_consen 40 ATTTEIRFLARVYQATKDPRYREAFLKGLDYLLKAQYP-NGGWPQFYPLRG---------GYHDHITFNDDAMVNVLELL 109 (289)
T ss_dssp TTHHHHHHHHHHHHHCG-HHHHHHHHHHHHHHHHHS-T-TS--BSECS--S---------GGGGSEE-GGGHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCC-CCCCCccCCCCC---------CCCCceEEccHHHHHHHHHH
Confidence 35666788899999999999999999999999999994 345665666421 011211 234566777
Q ss_pred HHHHHHcCCh---------hHHHHHHHHHHHHHHh
Q 011051 243 LDQYTFADNT---------QALKMTKWMVEYFYNR 268 (494)
Q Consensus 243 vd~y~~tG~~---------kaL~ia~r~aD~~~~~ 268 (494)
.+.++..++- ++.+.+.|-.|++.+.
T Consensus 110 ~~v~~~~~~~~~v~~~~~~r~~~A~~kgi~ciL~t 144 (289)
T PF09492_consen 110 RDVAEGKGDFAFVDESLRARARAAVDKGIDCILKT 144 (289)
T ss_dssp HHHHCT-TTSTTS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCCccccCHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888877 8999999999999875
No 63
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=63.95 E-value=55 Score=33.80 Aligned_cols=142 Identities=15% Similarity=0.066 Sum_probs=72.5
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHHHhhcccccccchhhhhhhhcccccchHHHHHHHHHhcCChhHHHHHhhhcccc
Q 011051 240 AGLLDQYTFADNTQALKMTKWMVEYFYNRVQNVITKYSVERHWNSLNEETGGMNDVLYRLYTITQDPKHLLLAHLFDKPC 319 (494)
Q Consensus 240 ~GLvd~y~~tG~~kaL~ia~r~aD~~~~~~~~~~~k~~~~~~~~~l~~e~GGm~eaL~~LY~iTGd~ryL~lA~~F~~~~ 319 (494)
.=|...|+.|+|++.++.+.|-.||+.+. +++-..+.+.. +..+| +-++-.
T Consensus 46 ~fLa~~y~~t~d~~y~~A~~kgl~ylL~a------QypnGGWPQ~y-P~~~~----------------------Y~~~IT 96 (289)
T PF09492_consen 46 RFLARVYQATKDPRYREAFLKGLDYLLKA------QYPNGGWPQFY-PLRGG----------------------YHDHIT 96 (289)
T ss_dssp HHHHHHHHHCG-HHHHHHHHHHHHHHHHH------S-TTS--BSEC-S--SG----------------------GGGSEE
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHHHh------hCCCCCCCccC-CCCCC----------------------CCCceE
Confidence 44668999999999999999999999764 11111111110 00011 111111
Q ss_pred cchhhhhcCCCCCCCcccchHHHHHHHHHHHHHhCCh---------hHHHHHHHHHHHHhhcCceecccCCC-----CCC
Q 011051 320 FLGLLAVQADDISGFHANTHIPVVIGSQMRYEVTGDP---------LYKVTGTFFMDIVNASHGYATGGTSA-----GEF 385 (494)
Q Consensus 320 ~~~~la~~~d~l~~~HAnt~ip~~~G~a~~y~~TGD~---------~yl~a~~~~w~~v~~~~~y~TGG~g~-----~E~ 385 (494)
|.| +..+.++.=+.++++-.++- ++++|+++..+.|.+.++-+.|=... +|.
T Consensus 97 fND--------------dam~~vl~lL~~v~~~~~~~~~v~~~~~~r~~~A~~kgi~ciL~tQi~~~g~~t~W~qQhD~~ 162 (289)
T PF09492_consen 97 FND--------------DAMVNVLELLRDVAEGKGDFAFVDESLRARARAAVDKGIDCILKTQIRQNGKLTAWCQQHDEV 162 (289)
T ss_dssp -GG--------------GHHHHHHHHHHHHHCT-TTSTTS-HHHHHHHHHHHHHHHHHHHHHS-EETTEE----SEE-TT
T ss_pred Ecc--------------HHHHHHHHHHHHHHhhcCCccccCHHHHHHHHHHHHHHHHHHHHHHcccCCCCCchhhccCcc
Confidence 111 11222333333444444444 77899999999999999987654432 333
Q ss_pred -C----CCCCcccccCCCCccccchhhHHHHHHHHHhccC-CCCchHHHHHHHH
Q 011051 386 -W----SDPKRLASTLGTENEESCTTYNMLKVSRHLFRWT-KEMVYADYYERAL 433 (494)
Q Consensus 386 -f----~~~~~L~~~l~~~~~ETCas~n~lkl~~~L~~~t-gd~~YaD~~Er~L 433 (494)
+ ...+++|.. .+.||...+.. |..+. +.+++.+-+|-++
T Consensus 163 Tl~Pa~AR~yE~pSl---s~~ES~~iv~~------LM~~~~ps~~v~~aI~~Av 207 (289)
T PF09492_consen 163 TLQPAWARAYEPPSL---SGSESVGIVRF------LMSLPNPSPEVLAAIEAAV 207 (289)
T ss_dssp T-SB---STT--SSE---ECCCHHHHHHH------HCTSSS--HHHHHHHHHHH
T ss_pred cccccccccCCCccc---ccccHHHHHHH------HhcCCCCCHHHHHHHHHHH
Confidence 2 234454432 45566554444 44444 5677887777664
No 64
>KOG2204 consensus Mannosyl-oligosaccharide alpha-1,2-mannosidase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=63.41 E-value=72 Score=35.76 Aligned_cols=186 Identities=22% Similarity=0.218 Sum_probs=98.8
Q ss_pred HHHhcCChhHHHHHHHHHHHHHHHhhhCCCcccccC--CchhHhhhhhcCCCCcccch-HH----HHHHHHHHHHHHcCC
Q 011051 179 MWASTHNVTLKEKMTAVVSALSECQNKMGSGYLSAF--PSEQFDRFEALKPVWAPYYT-IH----KILAGLLDQYTFADN 251 (494)
Q Consensus 179 ~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~~~--p~~~~~~l~~~~~~W~p~Y~-~h----kl~~GLvd~y~~tG~ 251 (494)
+-..++||...+|+..|.+.+.+.-. |+|-...| |. +..|....+ +| -+++=|+..+..+|+
T Consensus 342 LS~ltg~P~~~ekv~~IRk~l~k~ek--P~GLypnYinP~---------sg~wgq~~tslg~lgDSfyeyllK~wl~s~k 410 (625)
T KOG2204|consen 342 LSKLTGNPTFAEKVVKIRKVLNKSEK--PHGLYPNYINPS---------SGEWGQHHTSLGALGDSFYEYLLKAWLQSDK 410 (625)
T ss_pred hhhccCCchHHHHHHHHHHHHHhhcC--CCCCCcccccCC---------CCchhhHHhHHhhhhhhHHHHHHHHHhhcCC
Confidence 33468999999999999999988888 88755444 22 113433222 11 134557778888887
Q ss_pred hhHHHHHHHHHHHHHHhhcc-cccccch-----------hhh-h--hhhcccccchHHHHHHHHHhcCC-----hhHHHH
Q 011051 252 TQALKMTKWMVEYFYNRVQN-VITKYSV-----------ERH-W--NSLNEETGGMNDVLYRLYTITQD-----PKHLLL 311 (494)
Q Consensus 252 ~kaL~ia~r~aD~~~~~~~~-~~~k~~~-----------~~~-~--~~l~~e~GGm~eaL~~LY~iTGd-----~ryL~l 311 (494)
.. .-+++|-+=.+...+. ++-+.+. .+. + .-+.|-.||| .-|=.++++ ++|++|
T Consensus 411 Td--~eak~my~~am~Ai~~~li~~S~~s~ltyi~e~~~g~lehKm~hlacf~gGm----~algA~~~~~~~~~~~y~el 484 (625)
T KOG2204|consen 411 TD--CEAKGMYEDAMIAIEKYLIFKSDGSGLTYISEWNGGGLEHKMGHLACFAGGM----FALGAIKGDTVGSSKHYLEL 484 (625)
T ss_pred cc--hHHHHhHHHHHHHHHhhheeccCCCCeEEEEecCCCchhhhhchhhcccccc----eeeccccCCCcchhHHHHHH
Confidence 66 3344443322222111 1100000 000 0 1133344544 346666665 579999
Q ss_pred Hhhhccccc---------chhhhhcCCCCCCCcccc--------hHHHHHHHHHHHHHhCChhHHHHHHHHHHHHhhcCc
Q 011051 312 AHLFDKPCF---------LGLLAVQADDISGFHANT--------HIPVVIGSQMRYEVTGDPLYKVTGTFFMDIVNASHG 374 (494)
Q Consensus 312 A~~F~~~~~---------~~~la~~~d~l~~~HAnt--------~ip~~~G~a~~y~~TGD~~yl~a~~~~w~~v~~~~~ 374 (494)
+.-....+- ++|.+..-+.-...-+++ .-.++.+.--++++|||++|++-.......+- ++.
T Consensus 485 ~~eia~TchesY~rt~T~lgpesf~fn~~~ea~~~r~~EsyyILrpEviEs~fYlwRlT~d~kyR~wgweavqale-k~c 563 (625)
T KOG2204|consen 485 GGEIATTCHESYTRTTTKLGPESFWFNHGVEAFAVRKVESYYILRPEVIESYFYLWRLTGDQKYRSWGWEAVQALE-KYC 563 (625)
T ss_pred hHHHHHHHHHHHhccccccChhhhcccCccchhhhhcccceeecCHHHHHHHHHHhhhcCChhHHHHHHHHHHHHH-Hhc
Confidence 987744321 223221111111111111 11246777788999999999997665555555 344
Q ss_pred eecccCCC
Q 011051 375 YATGGTSA 382 (494)
Q Consensus 375 y~TGG~g~ 382 (494)
=+.+|.+.
T Consensus 564 r~~~G~~g 571 (625)
T KOG2204|consen 564 RVAKGYSG 571 (625)
T ss_pred ccccchhh
Confidence 45556553
No 65
>PF06917 Pectate_lyase_2: Periplasmic pectate lyase; InterPro: IPR010702 This family consists of several Enterobacterial periplasmic pectate lyase proteins. A major virulence determinant of the plant-pathogenic enterobacterium Erwinia chrysanthemi is the production of pectate lyase enzymes that degrade plant cell walls [].; GO: 0016837 carbon-oxygen lyase activity, acting on polysaccharides, 0045490 pectin catabolic process, 0005737 cytoplasm; PDB: 2V8J_A 2V8K_A 2V8I_A.
Probab=61.72 E-value=17 Score=40.06 Aligned_cols=86 Identities=17% Similarity=0.147 Sum_probs=54.5
Q ss_pred HHHHHHHHhcCChhHHHHHhhhcccccchhhh---hcCCCCCCCcccchHHHHHHHHHHHHHhCChhHHHHHHHHHHHHh
Q 011051 294 DVLYRLYTITQDPKHLLLAHLFDKPCFLGLLA---VQADDISGFHANTHIPVVIGSQMRYEVTGDPLYKVTGTFFMDIVN 370 (494)
Q Consensus 294 eaL~~LY~iTGd~ryL~lA~~F~~~~~~~~la---~~~d~l~~~HAnt~ip~~~G~a~~y~~TGD~~yl~a~~~~w~~v~ 370 (494)
-++++-|++++|+..-+++..+.+.--++.+. ...-.++.-+.+..-..+.++.++|+.|++++|++.|+.+=+++.
T Consensus 391 l~~vra~~~s~D~~Lw~~~~~m~~~~gLGdig~~~~~~~~~~~~~~~~sp~~L~allEL~~atq~~~~l~lA~~~g~~l~ 470 (557)
T PF06917_consen 391 LPYVRAYRLSRDPELWDLARTMAHHFGLGDIGNAAGKEPRVNMQTDNASPYLLFALLELYQATQDARYLELADQVGENLF 470 (557)
T ss_dssp HHHHHHHHHS--HHHHHHHHHHHHHTT-EE-TTBTTBS-EE-TT-----HHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhhcCcccccCccccccccccCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 38999999999999999998887644333221 111112233445666788999999999999999999999999998
Q ss_pred hcCceecccC
Q 011051 371 ASHGYATGGT 380 (494)
Q Consensus 371 ~~~~y~TGG~ 380 (494)
++| |.-|=+
T Consensus 471 ~~~-~~~GlF 479 (557)
T PF06917_consen 471 EQH-FHRGLF 479 (557)
T ss_dssp HHH-EETTEE
T ss_pred HHH-ccCcee
Confidence 654 334433
No 66
>PF06917 Pectate_lyase_2: Periplasmic pectate lyase; InterPro: IPR010702 This family consists of several Enterobacterial periplasmic pectate lyase proteins. A major virulence determinant of the plant-pathogenic enterobacterium Erwinia chrysanthemi is the production of pectate lyase enzymes that degrade plant cell walls [].; GO: 0016837 carbon-oxygen lyase activity, acting on polysaccharides, 0045490 pectin catabolic process, 0005737 cytoplasm; PDB: 2V8J_A 2V8K_A 2V8I_A.
Probab=61.60 E-value=30 Score=38.15 Aligned_cols=87 Identities=16% Similarity=0.273 Sum_probs=54.5
Q ss_pred hhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhCCCcccccCCchhHhhhhhcCCCCcccchHHHHHHHHHHHHHH
Q 011051 169 VGHYLSASAHMWASTHNVTLKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFEALKPVWAPYYTIHKILAGLLDQYTF 248 (494)
Q Consensus 169 ~G~~LsA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~~~p~~~~~~l~~~~~~W~p~Y~~hkl~~GLvd~y~~ 248 (494)
-++||=+.+..|..++|++|-+.+..|...+ +=|=|+..+...- +++ ....-+.-| ++.++++.|++
T Consensus 386 ~~~yll~~vra~~~s~D~~Lw~~~~~m~~~~-------gLGdig~~~~~~~-~~~-~~~~~~sp~----~L~allEL~~a 452 (557)
T PF06917_consen 386 DPDYLLPYVRAYRLSRDPELWDLARTMAHHF-------GLGDIGNAAGKEP-RVN-MQTDNASPY----LLFALLELYQA 452 (557)
T ss_dssp -HHHHHHHHHHHHHS--HHHHHHHHHHHHHT-------T-EE-TTBTTBS--EE--TT-----HH----HHHHHHHHHHH
T ss_pred chhHhHHHHHHHHcCCCHHHHHHHHHHHhhc-------CcccccCcccccc-ccc-cCCCCCCHH----HHHHHHHHHHH
Confidence 3789999999999999999998877776644 3444554322110 011 111112233 67899999999
Q ss_pred cCChhHHHHHHHHHHHHHHh
Q 011051 249 ADNTQALKMTKWMVEYFYNR 268 (494)
Q Consensus 249 tG~~kaL~ia~r~aD~~~~~ 268 (494)
|++++.|..|.++++-+.++
T Consensus 453 tq~~~~l~lA~~~g~~l~~~ 472 (557)
T PF06917_consen 453 TQDARYLELADQVGENLFEQ 472 (557)
T ss_dssp H--HHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999887654
No 67
>KOG2430 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=57.32 E-value=1.1e+02 Score=32.47 Aligned_cols=183 Identities=12% Similarity=0.199 Sum_probs=97.9
Q ss_pred chHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHhhccccc--ccchh---hhhhhhccccc-chH---HHHHHHHHhc
Q 011051 233 YTIHKILAGLLDQYTFADNTQALKMTKWMVEYFYNRVQNVIT--KYSVE---RHWNSLNEETG-GMN---DVLYRLYTIT 303 (494)
Q Consensus 233 Y~~hkl~~GLvd~y~~tG~~kaL~ia~r~aD~~~~~~~~~~~--k~~~~---~~~~~l~~e~G-Gm~---eaL~~LY~iT 303 (494)
=|.|-++.-..+.-++||.+-.-+-++|..|++.+.-..-.. ...+. ..|..-..+.| |+. |-+.+.|-+-
T Consensus 185 ac~gtlilefaals~~tg~~ifee~arkaldflwekr~rss~l~g~~inihsgdw~rkdsgigagidsyyey~lkayill 264 (587)
T KOG2430|consen 185 ACAGTLILEFAALSRFTGAPIFEEKARKALDFLWEKRHRSSDLMGTTINIHSGDWTRKDSGIGAGIDSYYEYLLKAYILL 264 (587)
T ss_pred hccchhhhhHHHHhhccCChhhHHHHHHHHHHHHHHhcccccccceeEEeccCcceecccCcCcchHHHHHHHHHHhhee
Confidence 466777777777888999999999999999998765322100 00011 11211001112 443 7888999999
Q ss_pred CChhHHHHHhhhcccccchhhhh---cCCCCCCCcccchHHHH--HHHHHH--------HHHhCChh-HHHHHHHHHHHH
Q 011051 304 QDPKHLLLAHLFDKPCFLGLLAV---QADDISGFHANTHIPVV--IGSQMR--------YEVTGDPL-YKVTGTFFMDIV 369 (494)
Q Consensus 304 Gd~ryL~lA~~F~~~~~~~~la~---~~d~l~~~HAnt~ip~~--~G~a~~--------y~~TGD~~-yl~a~~~~w~~v 369 (494)
||..||+ +|.... +...+ ....+-..|- |-|++ -|+++. -.+.||-+ -.+.-+-+++.|
T Consensus 265 gddsfld---rfn~hy--dai~ryi~k~pi~ldvhi--hkp~l~ar~~mdallaf~pglqvlkgdik~aie~heml~qvi 337 (587)
T KOG2430|consen 265 GDDSFLD---RFNKHY--DAIKRYINKGPIFLDVHI--HKPMLAARGFMDALLAFFPGLQVLKGDIKEAIEMHEMLFQVI 337 (587)
T ss_pred ccHHHHH---HHHHHH--HHHHHHhcCCCeEEEEec--ccchhhHhhHHHHHHHhCcchhhhccccHHHHHHHHHHHHHH
Confidence 9999986 343221 11111 0011111232 23332 233322 23456632 233334566655
Q ss_pred hhcCceecccCCCCCCCCCCCcccccCCCCccccchhhHHHHHHHHHhccCCCCchHHHHHHHHhh
Q 011051 370 NASHGYATGGTSAGEFWSDPKRLASTLGTENEESCTTYNMLKVSRHLFRWTKEMVYADYYERALTN 435 (494)
Q Consensus 370 ~~~~~y~TGG~g~~E~f~~~~~L~~~l~~~~~ETCas~n~lkl~~~L~~~tgd~~YaD~~Er~LyN 435 (494)
.+++.. .|+|+.+.+ -+.+|.=.-.+....+.-|++.|||+.|..+--..+=|
T Consensus 338 kkh~fl-------peaft~df~------vhwaehpirpefaestyflykat~dp~yl~v~k~iidn 390 (587)
T KOG2430|consen 338 KKHKFL-------PEAFTHDFQ------VHWAEHPIRPEFAESTYFLYKATGDPHYLEVAKQIIDN 390 (587)
T ss_pred HHcccC-------hHhhcccce------eecccCCCChhhhhhheeeecccCCchHHHHHHHHHHH
Confidence 544332 366666543 12333333344444566689999999999887666544
No 68
>KOG2431 consensus 1, 2-alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=56.86 E-value=16 Score=39.41 Aligned_cols=80 Identities=20% Similarity=0.279 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHhhcccccccchhh-----------hhh--hhcccccchHHHHHHHHHhc
Q 011051 237 KILAGLLDQYTFADNTQALKMTKWMVEYFYNRVQNVITKYSVER-----------HWN--SLNEETGGMNDVLYRLYTIT 303 (494)
Q Consensus 237 kl~~GLvd~y~~tG~~kaL~ia~r~aD~~~~~~~~~~~k~~~~~-----------~~~--~l~~e~GGm~eaL~~LY~iT 303 (494)
.++-||+.+|-++|++-.|+.|+.++|-+...|.. +...+... .|. .-..|.-.+..-+-.|-++|
T Consensus 179 RvLGGLLSayHLsg~~~~L~kA~dlgdrLl~AF~s-ps~IPysdVnL~~~~A~~p~~~~~SStaEvttiQlEfr~Ls~lt 257 (546)
T KOG2431|consen 179 RVLGGLLSAYHLSGDEMFLNKAEDLGDRLLPAFSS-PSPIPYSDVNLGTGTAHPPRWTGDSSTAEVTTIQLEFRYLSRLT 257 (546)
T ss_pred HHHhhhhhhhccccchhHHHHHHHHHHHHHHhhcC-CCCCCcceeecCCCcccCCCCCCccchhhheeeeeeHHHHHhhc
Confidence 57889999999999999999999999999888842 12222111 010 00112222222456799999
Q ss_pred CChhHHHHHhhhcc
Q 011051 304 QDPKHLLLAHLFDK 317 (494)
Q Consensus 304 Gd~ryL~lA~~F~~ 317 (494)
||++|-++|.+..+
T Consensus 258 gd~kY~~~a~kv~e 271 (546)
T KOG2431|consen 258 GDPKYEELAEKVTE 271 (546)
T ss_pred CCchHHHHHHHHHH
Confidence 99999999988743
No 69
>KOG2430 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=56.84 E-value=58 Score=34.36 Aligned_cols=95 Identities=17% Similarity=0.140 Sum_probs=58.8
Q ss_pred hhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhCCCcccccC---CchhHhhhhhcCCCCcccchHHHHHHHHHHH
Q 011051 169 VGHYLSASAHMWASTHNVTLKEKMTAVVSALSECQNKMGSGYLSAF---PSEQFDRFEALKPVWAPYYTIHKILAGLLDQ 245 (494)
Q Consensus 169 ~G~~LsA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~~~---p~~~~~~l~~~~~~W~p~Y~~hkl~~GLvd~ 245 (494)
.|-.|--.|.+-..|+++.+++++...+|.|-+-.+. +.--.++. -...|++-+.+ +-+ .+..-++=++.+
T Consensus 187 ~gtlilefaals~~tg~~ifee~arkaldflwekr~r-ss~l~g~~inihsgdw~rkdsg--iga---gidsyyey~lka 260 (587)
T KOG2430|consen 187 AGTLILEFAALSRFTGAPIFEEKARKALDFLWEKRHR-SSDLMGTTINIHSGDWTRKDSG--IGA---GIDSYYEYLLKA 260 (587)
T ss_pred cchhhhhHHHHhhccCChhhHHHHHHHHHHHHHHhcc-cccccceeEEeccCcceecccC--cCc---chHHHHHHHHHH
Confidence 3555555555667899999999999999988654432 23333321 12234333211 000 111223557788
Q ss_pred HHHcCChhHHHHHHHHHHHHHHhh
Q 011051 246 YTFADNTQALKMTKWMVEYFYNRV 269 (494)
Q Consensus 246 y~~tG~~kaL~ia~r~aD~~~~~~ 269 (494)
|-.-||+..|+-.-+.-|-+.+.+
T Consensus 261 yillgddsfldrfn~hydai~ryi 284 (587)
T KOG2430|consen 261 YILLGDDSFLDRFNKHYDAIKRYI 284 (587)
T ss_pred hheeccHHHHHHHHHHHHHHHHHh
Confidence 889999999998888877776664
No 70
>PF02011 Glyco_hydro_48: Glycosyl hydrolase family 48; InterPro: IPR000556 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 48 GH48 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); cellobiohydrolase (3.2.1.91 from EC). The largest cellulase gene sequenced to date is one of the cellulases (celA) from the genome of the thermophilic anaerobic bacterium Caldocellum saccharolyticum. The celA gene product is a polypeptide of 1751 amino acids; this has a multidomain structure comprising two catalytic domains and two cellulose-binding domains, linked by Pro-Thr-rich regions. The N-terminal domain encodes an endoglucanase activity on carboxymethylcellulose, consistent with its similarity to several endo-1, 4-beta-D-glucanase sequences. The C-terminal domain shows similarity to a cellulase from Clostridium thermocellum (CelS), which acts synergistically with a second component to hydrolyse crystalline cellulose [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1FAE_A 1FBO_A 1FBW_A 1FCE_A 1F9D_A 1F9O_A 1G9G_A 1G9J_A 2QNO_A 1L1Y_E ....
Probab=55.21 E-value=27 Score=38.98 Aligned_cols=94 Identities=13% Similarity=0.128 Sum_probs=61.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhCCCcccccCCch-hHhhhhhcCCCCc------------------cc
Q 011051 172 YLSASAHMWASTHNVTLKEKMTAVVSALSECQNKMGSGYLSAFPSE-QFDRFEALKPVWA------------------PY 232 (494)
Q Consensus 172 ~LsA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~~~p~~-~~~~l~~~~~~W~------------------p~ 232 (494)
=++=+|..|..|+|++.++.+|++|..+...-...+||=+. +|.. .|+..- +.|. ..
T Consensus 412 sm~R~AeyYy~tGd~~ak~ildKWv~W~~~~~~~~~dG~f~-IPs~L~WSGqP---DtW~~s~t~N~nLHV~V~~yg~Dv 487 (619)
T PF02011_consen 412 SMERVAEYYYETGDARAKAILDKWVAWALSNTTVNSDGTFE-IPSTLEWSGQP---DTWTGSPTGNPNLHVTVTDYGQDV 487 (619)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHTT-EE-TTS-EE-EEEEEEEES--------TTS----TTEEEEEEEEE--H
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHHHhhceeCCCCcEe-cCCCCcccCCC---CCccCCCCCCCceEEEEecCCCch
Confidence 37888999999999999999999999998776544666332 2431 121110 1121 12
Q ss_pred chHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHhh
Q 011051 233 YTIHKILAGLLDQYTFADNTQALKMTKWMVEYFYNRV 269 (494)
Q Consensus 233 Y~~hkl~~GLvd~y~~tG~~kaL~ia~r~aD~~~~~~ 269 (494)
=+.+-+...|.-|...+|+++++++++.+.|-+.+..
T Consensus 488 Gva~S~AktL~yYAA~sg~~~Ak~~Ak~LLD~iW~~~ 524 (619)
T PF02011_consen 488 GVAGSYAKTLTYYAAKSGDQEAKDTAKQLLDAIWNNY 524 (619)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhC
Confidence 2445566677777778899999999999999997753
No 71
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=54.59 E-value=3 Score=35.33 Aligned_cols=59 Identities=14% Similarity=0.218 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHhhhCCCcccccCCchhHhhhhhcCCCCcccchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHhh
Q 011051 192 MTAVVSALSECQNKMGSGYLSAFPSEQFDRFEALKPVWAPYYTIHKILAGLLDQYTFADNTQALKMTKWMVEYFYNRV 269 (494)
Q Consensus 192 ~d~~Vd~l~~~Q~~~~dGYL~~~p~~~~~~l~~~~~~W~p~Y~~hkl~~GLvd~y~~tG~~kaL~ia~r~aD~~~~~~ 269 (494)
|++.|+.|.+.|. +||..+ ++ +. ...+ ...+++.++...++++..+.+.|.++|+.+.-
T Consensus 1 i~~~~~~l~~~Q~--~dG~W~-~~---~~---------~~~~----~t~~~~~al~~~~~~~~~~ai~ka~~~l~~~Q 59 (109)
T PF13243_consen 1 IKRAAEWLLSQQN--PDGSWG-YN---WG---------SDVF----VTAALILALAAAGDAAVDEAIKKAIDWLLSHQ 59 (109)
T ss_dssp -----------------------------------------------------------TS-SSBSSHHHHHHHHH--
T ss_pred Ccccccccccccc--cccccc-cc---cc---------cccc----ccccccccccccCCCCcHHHHHHHHHHHHHhc
Confidence 5678999999999 998885 22 10 0111 22344555566688888889999999998863
No 72
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=53.65 E-value=7 Score=25.54 Aligned_cols=18 Identities=33% Similarity=0.606 Sum_probs=14.1
Q ss_pred CcchhHHHHHHHHHhhcc
Q 011051 1 MKNFVFKVLVLFLSCWVA 18 (494)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (494)
||+.++-++++++|.||+
T Consensus 7 mKkil~~l~a~~~LagCs 24 (25)
T PF08139_consen 7 MKKILFPLLALFMLAGCS 24 (25)
T ss_pred HHHHHHHHHHHHHHhhcc
Confidence 377777677788899996
No 73
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=53.64 E-value=95 Score=35.37 Aligned_cols=81 Identities=11% Similarity=0.260 Sum_probs=50.8
Q ss_pred CChhHHHHHHHHHHHHHHHhhhCCCcccccCCch---hH-hhhhh---cCCC-Ccccc--hHHHHHHHHHHHHHHcCChh
Q 011051 184 HNVTLKEKMTAVVSALSECQNKMGSGYLSAFPSE---QF-DRFEA---LKPV-WAPYY--TIHKILAGLLDQYTFADNTQ 253 (494)
Q Consensus 184 ~D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~~~p~~---~~-~~l~~---~~~~-W~p~Y--~~hkl~~GLvd~y~~tG~~k 253 (494)
+++...+.+++.|+.|.+.|. +||-+++|... .| ..+.. -.+. +-+-| +.+..+++|..+- . ..+.
T Consensus 382 ~~~~~~~~l~~a~~~Ll~~Qn--~dGGw~ay~~~~~~~~l~~l~p~e~f~d~~~d~~~~~~T~~~l~aL~~~~-~-r~~~ 457 (621)
T TIGR01787 382 DEHVKRDRLRDAVNWILGMQS--SNGGFAAYDPDNTGEWLELLNPSEVFGDIMIDPPYVDVTARVIQALGAFG-H-RADE 457 (621)
T ss_pred cccccHHHHHHHHHHHHHHcC--CCCCEeeeccccchHHHHHhcchhhhccccccCCCCchHHHHHHHHHHhc-C-ccHh
Confidence 466777889999999999999 99999887421 11 11100 0111 11223 5677888886542 1 1134
Q ss_pred HHHHHHHHHHHHHHh
Q 011051 254 ALKMTKWMVEYFYNR 268 (494)
Q Consensus 254 aL~ia~r~aD~~~~~ 268 (494)
..+.+.|.++|+.+.
T Consensus 458 ~~~~i~rAl~~L~~~ 472 (621)
T TIGR01787 458 IRNVLERALEYLRRE 472 (621)
T ss_pred HHHHHHHHHHHHHHh
Confidence 557888999998764
No 74
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=53.17 E-value=53 Score=27.52 Aligned_cols=61 Identities=16% Similarity=0.143 Sum_probs=36.6
Q ss_pred HHHH--HHHHHHHhhhCCCcccccCCchhHhhhhhcCCCCcccchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHh
Q 011051 192 MTAV--VSALSECQNKMGSGYLSAFPSEQFDRFEALKPVWAPYYTIHKILAGLLDQYTFADNTQALKMTKWMVEYFYNR 268 (494)
Q Consensus 192 ~d~~--Vd~l~~~Q~~~~dGYL~~~p~~~~~~l~~~~~~W~p~Y~~hkl~~GLvd~y~~tG~~kaL~ia~r~aD~~~~~ 268 (494)
.+++ ++.|.++|. +||-++..|... . ...|. .+.++... ...|.+...+.+.|.++|+...
T Consensus 42 ~~~~~~~~~L~~~q~--~dGg~~~~~~~~------~----~~~~~---t~~~l~~l-~~~~~~~~~~~~~~a~~~l~~~ 104 (113)
T PF13249_consen 42 RDRAAAVEWLLSQQN--PDGGWGSNPDGG------P----PDVYT---TYVALAAL-ELLGRPDDEEAVRKAVDWLLSC 104 (113)
T ss_dssp HHHHHHHHHHHHHB---TTSGBBSSTTTT-----------BSHHH---HHHHHHHH-HHHT-GGCHTTHCCHHHHHHHT
T ss_pred HHHHHHHHHHHHhCC--CCCCccCCCCCC------C----ccHHH---HHHHHHHH-HHcCCCcccHHHHHHHHHHHHh
Confidence 5556 999999999 999888765311 0 01222 22333333 4556655577888888988763
No 75
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=52.19 E-value=1.3e+02 Score=34.39 Aligned_cols=77 Identities=10% Similarity=0.053 Sum_probs=50.2
Q ss_pred hhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhCCCccc-ccCCchhHhhhhhcCCCCcccchHHHHHHHHHHHHH
Q 011051 169 VGHYLSASAHMWASTHNVTLKEKMTAVVSALSECQNKMGSGYL-SAFPSEQFDRFEALKPVWAPYYTIHKILAGLLDQYT 247 (494)
Q Consensus 169 ~G~~LsA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYL-~~~p~~~~~~l~~~~~~W~p~Y~~hkl~~GLvd~y~ 247 (494)
.++-|+|.+.. ++..-...+++-|+.|.+.|+ +||.. +.+.. ...|.....+.||.+
T Consensus 454 Ta~~l~al~~~----g~~~~~~~i~rav~~L~~~Q~--~dG~W~g~wg~-------------~~~Y~T~~al~aL~~--- 511 (635)
T TIGR01507 454 TARVLECLGSF----GYDDAWPVIERAVEYLKREQE--PDGSWFGRWGV-------------NYLYGTGAVLSALKA--- 511 (635)
T ss_pred HHHHHHHHHHh----CCCchhHHHHHHHHHHHHccC--CCCCCccCCCC-------------ccccHHHHHHHHHHH---
Confidence 46777777653 222227789999999999999 88864 43210 134666667777753
Q ss_pred HcCChhHHHHHHHHHHHHHHh
Q 011051 248 FADNTQALKMTKWMVEYFYNR 268 (494)
Q Consensus 248 ~tG~~kaL~ia~r~aD~~~~~ 268 (494)
.|-+..-+.+.|.++|+.+.
T Consensus 512 -~g~~~~~~~i~rAv~wL~~~ 531 (635)
T TIGR01507 512 -VGIDTREPYIQKALAWLESH 531 (635)
T ss_pred -cCCCcccHHHHHHHHHHHHh
Confidence 35444456788888998764
No 76
>KOG2429 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=49.82 E-value=1.3e+02 Score=33.92 Aligned_cols=158 Identities=21% Similarity=0.348 Sum_probs=85.0
Q ss_pred hHHHHHHhCCCCCC--CCCCCccCCCcCccccchhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhCCCcccccCC
Q 011051 138 VWSFQKTAGSPTAG--KAYEGWEDPTCELRGHFVGHYLSASAHMWASTHNVTLKEKMTAVVSALSECQNKMGSGYLSAFP 215 (494)
Q Consensus 138 L~nFr~~AGl~~~g--~~~ggWe~~d~~lrGh~~G~~LsA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~~~p 215 (494)
|++.|..-||-... ..-|-|..+++-+ |--+=-+-|-+...|.--+|+++.+.-.+.-..|.+--++ ++=|.+-.-
T Consensus 228 lW~~RS~igLlGn~idV~tG~W~~~~sGI-GAgiDSfyEYllK~yILfgd~e~lemf~ea~~ai~~y~r~-~~wY~~V~m 305 (622)
T KOG2429|consen 228 LWSLRSGIGLLGNHIDVQTGEWTAPDSGI-GAGIDSFYEYLLKGYILFGDPELLEMFNEAYEAIQKYTRK-GPWYVNVNM 305 (622)
T ss_pred HHhhcCCCCcccceeeccccceecccccc-ccchHHHHHHHHHHheecCCHHHHHHHHHHHHHHHHHhhc-CCeEEEEec
Confidence 67777766664211 1335688776543 3444456677778888889999998887777666554442 222222110
Q ss_pred ------chhHhhhhhcCCCCcccchHHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHHHHhhcccccccchh-------hh
Q 011051 216 ------SEQFDRFEALKPVWAPYYTIHKILAGLLDQYTFADN-TQALKMTKWMVEYFYNRVQNVITKYSVE-------RH 281 (494)
Q Consensus 216 ------~~~~~~l~~~~~~W~p~Y~~hkl~~GLvd~y~~tG~-~kaL~ia~r~aD~~~~~~~~~~~k~~~~-------~~ 281 (494)
-.+|+.|+. -| | ||. ..+|| +.|......+. -+.++||-++...... +-
T Consensus 306 ~~G~v~~p~~dSLqA---fw-p---------Glq---vLaGDvd~A~~~h~~y~-~vwkkyG~lPEryN~~~~~~~~~~~ 368 (622)
T KOG2429|consen 306 DSGSVSLPWFDSLQA---FW-P---------GLQ---VLAGDVDDAIRTHLMYF-SVWKKYGFLPERYNLATQEPPPKRE 368 (622)
T ss_pred CCCceehHHHhhHHh---hc-c---------chh---hhhcchHHHHHHHHHHH-HHHHHcCCCcccccccCCCCCCCcc
Confidence 012333321 12 1 111 23344 22222222222 2456676544332211 11
Q ss_pred hhhhcccccchHHHHHHHHHhcCChhHHHHHhhhcc
Q 011051 282 WNSLNEETGGMNDVLYRLYTITQDPKHLLLAHLFDK 317 (494)
Q Consensus 282 ~~~l~~e~GGm~eaL~~LY~iTGd~ryL~lA~~F~~ 317 (494)
+-.|++| +-|..+-||+.|+|+.||++..-+.+
T Consensus 369 ~YPLRPE---lvEStyyLYrATkdp~yL~vG~~~l~ 401 (622)
T KOG2429|consen 369 GYPLRPE---LVESTYYLYRATKDPFYLHVGEDMLK 401 (622)
T ss_pred cCCCCHH---HHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 1124433 35788999999999999999987743
No 77
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=48.64 E-value=1.2e+02 Score=34.71 Aligned_cols=109 Identities=16% Similarity=0.129 Sum_probs=61.2
Q ss_pred CCCCccCCCcC--c-cccchhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhCCCcccccCCch-hHhhhhhcC--
Q 011051 153 AYEGWEDPTCE--L-RGHFVGHYLSASAHMWASTHNVTLKEKMTAVVSALSECQNKMGSGYLSAFPSE-QFDRFEALK-- 226 (494)
Q Consensus 153 ~~ggWe~~d~~--l-rGh~~G~~LsA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~~~p~~-~~~~l~~~~-- 226 (494)
+.|||-+...+ . .--+...-|.|+..+ ....++...+.+++-|+.|...|. +||.+++|... ...-++..+
T Consensus 364 ~~GGW~f~~~~~~~pd~ddTa~~L~AL~~~-~~~~~~~~~~~i~ra~~wLl~~Qn--~dGgw~af~~~~~~~~l~~~~f~ 440 (635)
T TIGR01507 364 EPGGWAFQFDNVYYPDVDDTAVVVWALNGL-RLPDERRRRDAMTKAFRWIAGMQS--SNGGWGAFDVDNTSDLLNHIPFC 440 (635)
T ss_pred CCCccCCCCCCCCCCCchhHHHHHHHHHHc-CCCccccchHHHHHHHHHHHHhcC--CCCCEecccCCcchhHHhcCCcc
Confidence 45788764211 0 001356778887664 223456677899999999999999 99999987421 111011100
Q ss_pred C--C-Ccccc--hHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHh
Q 011051 227 P--V-WAPYY--TIHKILAGLLDQYTFADNTQALKMTKWMVEYFYNR 268 (494)
Q Consensus 227 ~--~-W~p~Y--~~hkl~~GLvd~y~~tG~~kaL~ia~r~aD~~~~~ 268 (494)
+ . =-|-+ +.+.++++|.. .|..+.-+.+.|.++|+.+.
T Consensus 441 d~~~~~D~~~~d~Ta~~l~al~~----~g~~~~~~~i~rav~~L~~~ 483 (635)
T TIGR01507 441 DFGAVTDPPTADVTARVLECLGS----FGYDDAWPVIERAVEYLKRE 483 (635)
T ss_pred ccccccCCCCccHHHHHHHHHHH----hCCCchhHHHHHHHHHHHHc
Confidence 0 0 00112 23455555543 34444356778888888764
No 78
>PLN02909 Endoglucanase
Probab=48.22 E-value=2.6e+02 Score=31.00 Aligned_cols=26 Identities=12% Similarity=0.128 Sum_probs=22.3
Q ss_pred hCChhHHHHHHHHHHHHhhc----Cceecc
Q 011051 353 TGDPLYKVTGTFFMDIVNAS----HGYATG 378 (494)
Q Consensus 353 TGD~~yl~a~~~~w~~v~~~----~~y~TG 378 (494)
++.++|++.++..++-|..+ ++|++|
T Consensus 368 ~~~~~y~~fA~~QidYiLG~NP~~~SYVVG 397 (486)
T PLN02909 368 FDSTRLMAFAKQQIDYLLGANPQGRSYMVG 397 (486)
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCCceEec
Confidence 46789999999999999854 599998
No 79
>PF05426 Alginate_lyase: Alginate lyase; InterPro: IPR008397 Alginate is a family of 1-4-linked copolymers of beta-D-mannuronic acid (M) and alpha-L-guluronic acid (G). It is produced by brown algae and by some bacteria belonging to the genera Azotobacter and Pseudomonas. Alginate lyases catalyse the depolymerisation of alginates by beta -elimination, generating a molecule containing 4-deoxy-L-erythro-hex-4-enepyranosyluronate at the nonreducing end []. Two subfamilies of alginate lyase exist: the poly(beta-D-mannuronate) lyase, 4.2.2.3 from EC, and the poly(alpha-L-guluronate) lyase, 4.2.2.11 from EC. This entry represents a domain found in the former.; GO: 0045135 poly(beta-D-mannuronate) lyase activity, 0042122 alginic acid catabolic process, 0042597 periplasmic space; PDB: 4E1Y_A 4E25_A 4E23_B 1QAZ_A 1HV6_A 3NFV_A 3NNB_A.
Probab=48.05 E-value=61 Score=32.05 Aligned_cols=44 Identities=9% Similarity=-0.156 Sum_probs=28.8
Q ss_pred ccchHHHHHHHHHHHHHhCChhHHHHHHH-HHHHHhhcCceeccc
Q 011051 336 ANTHIPVVIGSQMRYEVTGDPLYKVTGTF-FMDIVNASHGYATGG 379 (494)
Q Consensus 336 Ant~ip~~~G~a~~y~~TGD~~yl~a~~~-~w~~v~~~~~y~TGG 379 (494)
.|-.+-...+++.+..+++|+++.+.+.+ +++.+...++...|.
T Consensus 165 nNh~~~~~~~~~~~ai~l~d~~~~~~a~~~~~~~~~~~qi~~dG~ 209 (272)
T PF05426_consen 165 NNHGTWANAAVMAIAIFLDDDELYDRAVNRFKKGIINKQIDPDGS 209 (272)
T ss_dssp SHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHCHHCCC-TTS-
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhccccccc
Confidence 34455566777788889999877666654 577777777776663
No 80
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=47.03 E-value=1.8e+02 Score=32.87 Aligned_cols=119 Identities=9% Similarity=0.126 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHhhhCCCcccccCCchhHhhhhhcCC--CCcccch-HHHHHHHHHHHHHHcCChhH----HHHHHHHH
Q 011051 190 EKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFEALKP--VWAPYYT-IHKILAGLLDQYTFADNTQA----LKMTKWMV 262 (494)
Q Consensus 190 ~k~d~~Vd~l~~~Q~~~~dGYL~~~p~~~~~~l~~~~~--~W~p~Y~-~hkl~~GLvd~y~~tG~~ka----L~ia~r~a 262 (494)
+.+.+.++.+.+.|. +||++-. ..+ +..... .|..--. .+.++-++..|++.||+... .+.+++.+
T Consensus 314 ~~a~~~l~~l~~~q~--~~G~~~~---~~~--~dG~~~~~~~~~Q~D~~g~~l~al~~y~~~t~d~~~~~~~~~~v~~a~ 386 (616)
T TIGR01577 314 DRVDRFFRWAMQTQS--RDGSWQQ---RYY--LNGRLAPLQWGLQIDETGSILWAMDQHYRLTNDRAFLEEIWESVQKAA 386 (616)
T ss_pred HHHHHHHHHHHHhhC--cCCCcce---EEe--cCCCCCCCCCCccccchhHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 556677899999999 8997521 111 100001 0111111 23355677788899998754 46788999
Q ss_pred HHHHHhhcccccccchhhhhhhhcc---cccchH----HHHHHHHHhcCCh----hHHHHHhhhc
Q 011051 263 EYFYNRVQNVITKYSVERHWNSLNE---ETGGMN----DVLYRLYTITQDP----KHLLLAHLFD 316 (494)
Q Consensus 263 D~~~~~~~~~~~k~~~~~~~~~l~~---e~GGm~----eaL~~LY~iTGd~----ryL~lA~~F~ 316 (494)
+|+.+..++-++. +....|+.-.. ..-.+. ...++|.+..|++ +|.+.|+.+.
T Consensus 387 ~fl~~~~~~~l~~-~~~~lWEer~G~~~~t~a~~~aAL~~aa~lA~~lGd~~~a~~~~~~Ad~ik 450 (616)
T TIGR01577 387 QYLILFIDPETPL-PCRDLWEEREGVFTYTASAVYGGLDAAAAVADKLGEKRLAQNWKKAAEFIK 450 (616)
T ss_pred HHHHHhccCCCCC-CCCccceecCCccCccHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 9998865321111 22233432000 001111 3667788888885 6777777764
No 81
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=46.40 E-value=2.1e+02 Score=32.72 Aligned_cols=114 Identities=13% Similarity=0.085 Sum_probs=65.1
Q ss_pred CCCCccCCCcC--cc-ccchhHHHHHHHHHHHhcC---ChhHHHHHHHHHHHHHHHhhhCCCcccccCCc---hhHhh-h
Q 011051 153 AYEGWEDPTCE--LR-GHFVGHYLSASAHMWASTH---NVTLKEKMTAVVSALSECQNKMGSGYLSAFPS---EQFDR-F 222 (494)
Q Consensus 153 ~~ggWe~~d~~--lr-Gh~~G~~LsA~a~~~a~t~---D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~~~p~---~~~~~-l 222 (494)
..|||-+.+.+ .. --..+.-|+|+..+-.... ++.-.+.+.+.|+.|..+|. +||=.++|.. ..|-+ +
T Consensus 357 ~~GGW~f~~~~~~~pdsD~Ta~~L~Al~~~~~~~~~~~~~~~~~~l~~av~~Ll~~Qn--~dGGw~~y~~~~~~~~l~~~ 434 (634)
T TIGR03463 357 AKGGWCFSDGDHGWPVSDCTAEALSASLVLEPLGLNPEERVPQARLQDAVEFILSRQN--EDGGFGTYERQRGPRVLELL 434 (634)
T ss_pred CCCccccccCCCCCCccccHHHHHHHHHHHhhcCCcccccccHHHHHHHHHHHHHhcC--CCCCEeccCCCCcHHHHhcC
Confidence 45777665311 00 0136788888766532111 11334789999999999999 7887777743 12210 0
Q ss_pred ------hhcCCCCcccchHHHHHHHHHHHHHHcC---ChhHHHHHHHHHHHHHHh
Q 011051 223 ------EALKPVWAPYYTIHKILAGLLDQYTFAD---NTQALKMTKWMVEYFYNR 268 (494)
Q Consensus 223 ------~~~~~~W~p~Y~~hkl~~GLvd~y~~tG---~~kaL~ia~r~aD~~~~~ 268 (494)
...--...--+|-++.+++|..+..... +++.-..+.|.++|+.+.
T Consensus 435 ~~~~~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~~~~~~~~i~~ai~rav~~L~~~ 489 (634)
T TIGR03463 435 NPSEMFSTCMTDVSYVECTSSCLQALAAWRKHHPHVPDGRITRAISRGVRFLRSR 489 (634)
T ss_pred ChHHhhcccccCCCcCcHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHh
Confidence 0000011234667788888877643332 234456778888888764
No 82
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=39.86 E-value=4e+02 Score=30.72 Aligned_cols=87 Identities=11% Similarity=0.052 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhCCCccc-ccCCchhHhhhhhcCCCCcc--cchHHHHHHHHHHHHHH
Q 011051 172 YLSASAHMWASTHNVTLKEKMTAVVSALSECQNKMGSGYL-SAFPSEQFDRFEALKPVWAP--YYTIHKILAGLLDQYTF 248 (494)
Q Consensus 172 ~LsA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYL-~~~p~~~~~~l~~~~~~W~p--~Y~~hkl~~GLvd~y~~ 248 (494)
|+.=++++....-..-..+.+.++.+.|.+.|. ++|++ ..| + + ++...|.+ +=..+.++.++-.+++
T Consensus 296 W~RD~a~~a~AL~~~G~~~~a~~~~~~l~~~~~--~~G~~lq~y----~--v-dG~~~~~~iQlD~~g~~i~~~~~l~~- 365 (648)
T TIGR01535 296 WPRDLYQVANAFLAAGDVDSALRSLDYLAKVQQ--DNGMFPQNS----W--V-DGKPYWTGIQLDETAFPILLAYRLHR- 365 (648)
T ss_pred ehhhHHHHHHHHHHCCCHHHHHHHHHHHHHHhc--cCCCcCcee----c--c-CCCCCCCCccccHHHHHHHHHHHHHH-
Confidence 554444444433223344567778888888999 78875 222 1 1 13333432 1112334554444444
Q ss_pred cCChhHHHHHHHHHHHHHHh
Q 011051 249 ADNTQALKMTKWMVEYFYNR 268 (494)
Q Consensus 249 tG~~kaL~ia~r~aD~~~~~ 268 (494)
.|.....+++++.|||+.+.
T Consensus 366 ~~~~~~~~~vk~aadfl~~~ 385 (648)
T TIGR01535 366 YDHAFYDKMLKPAADFIVKN 385 (648)
T ss_pred cCcHHHHHHHHHHHHHHHHc
Confidence 34455667899999999885
No 83
>PRK11443 lipoprotein; Provisional
Probab=37.86 E-value=21 Score=32.16 Aligned_cols=18 Identities=28% Similarity=0.399 Sum_probs=13.6
Q ss_pred CcchhHHHHHHHHHhhccc
Q 011051 1 MKNFVFKVLVLFLSCWVAL 19 (494)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (494)
||.+++ ++++++|.||+.
T Consensus 1 Mk~~~~-~~~~~lLsgCa~ 18 (124)
T PRK11443 1 MKKFIA-PLLALLLSGCQI 18 (124)
T ss_pred ChHHHH-HHHHHHHHhccC
Confidence 887776 566678999875
No 84
>PRK10449 heat-inducible protein; Provisional
Probab=37.07 E-value=22 Score=32.42 Aligned_cols=23 Identities=22% Similarity=0.111 Sum_probs=18.5
Q ss_pred CcchhHHHHHHHHHhhccccCcc
Q 011051 1 MKNFVFKVLVLFLSCWVALCKEC 23 (494)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~ 23 (494)
||.++..++++++|.+|+.....
T Consensus 1 mk~~~~~~~~~~~l~~C~~~~~~ 23 (140)
T PRK10449 1 MKKVVALVALSLLMAGCVSSGKI 23 (140)
T ss_pred ChhHHHHHHHHHHHHHhcCCCCC
Confidence 88888778888889999886543
No 85
>PF06291 Lambda_Bor: Bor protein; InterPro: IPR010438 This family consists of several Bacteriophage lambda Bor and Escherichia coli Iss proteins. Expression of bor significantly increases the survival of the E. coli host cell in animal serum. This property is a well known bacterial virulence determinant indeed, bor and its adjacent sequences are highly homologous to the iss serum resistance locus of the plasmid ColV2-K94, which confers virulence in animals. It has been suggested that lysogeny may generally have a role in bacterial survival in animal hosts, and perhaps in pathogenesis [].
Probab=35.29 E-value=25 Score=30.44 Aligned_cols=26 Identities=15% Similarity=0.109 Sum_probs=22.6
Q ss_pred CcchhHHHHHHHHHhhccccCcccCC
Q 011051 1 MKNFVFKVLVLFLSCWVALCKECTNS 26 (494)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 26 (494)
||++++..+++++|-||+...-+.+.
T Consensus 1 mKk~ll~~~lallLtgCatqt~~~~~ 26 (97)
T PF06291_consen 1 MKKLLLAAALALLLTGCATQTFTVGN 26 (97)
T ss_pred CcHHHHHHHHHHHHcccceeEEEeCC
Confidence 99999988999999999988887653
No 86
>PLN03012 Camelliol C synthase
Probab=34.53 E-value=5.5e+02 Score=30.24 Aligned_cols=98 Identities=12% Similarity=0.066 Sum_probs=55.8
Q ss_pred hhHHHHHHHHHHHhcC----ChhHHHHHHHHHHHHHHHhhhCCCcccccCCch---hHhhhhhcC---CCC--cccc--h
Q 011051 169 VGHYLSASAHMWASTH----NVTLKEKMTAVVSALSECQNKMGSGYLSAFPSE---QFDRFEALK---PVW--APYY--T 234 (494)
Q Consensus 169 ~G~~LsA~a~~~a~t~----D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~~~p~~---~~~~l~~~~---~~W--~p~Y--~ 234 (494)
.+.-|.|+..+..... ++.-.+++.+-|+.|..-|. .||=+++|... .|-+.-... .++ -+-| |
T Consensus 488 TAe~Lka~lll~~~~~~~~~~~~~~~~l~~av~wlL~mQn--~dGGwaafe~~~~~~~le~lnp~E~F~d~mid~~y~dc 565 (759)
T PLN03012 488 TAEGFKCCLLFSMIAPDIVGPKMDPEQLHDAVNILLSLQS--KNGGMTAWEPAGAPEWLELLNPTEMFADIVIEHEYNEC 565 (759)
T ss_pred cHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHhccC--CCCCEeeecCCcchHHHHhcChhhhhcCeecCCCcccH
Confidence 5777776544443222 34455899999999999999 88888777321 121110000 001 1223 3
Q ss_pred HHHHHHHHHHHHHHcCC---hhHHHHHHHHHHHHHHh
Q 011051 235 IHKILAGLLDQYTFADN---TQALKMTKWMVEYFYNR 268 (494)
Q Consensus 235 ~hkl~~GLvd~y~~tG~---~kaL~ia~r~aD~~~~~ 268 (494)
-+..+++|...-..-.+ ++.-..+.|.++|+.+.
T Consensus 566 Ta~~l~aL~~f~~~~~~~r~~~i~~~i~rAv~~L~~~ 602 (759)
T PLN03012 566 TSSAIQALILFKQLYPDHRTEEINAFIKKAAEYIENI 602 (759)
T ss_pred HHHHHHHHHHHhhhCcccchhhhHHHHHHHHHHHHHh
Confidence 67777877654433222 22345677788888764
No 87
>KOG2431 consensus 1, 2-alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=31.15 E-value=1.1e+02 Score=33.43 Aligned_cols=114 Identities=15% Similarity=0.156 Sum_probs=66.8
Q ss_pred hHHHHHHHHHHHHHhCChhHHHHHHHHHHHHhhcCceecccCCCCCCCCCCCcccccCCCCccccchhhHHHHH-HHHHh
Q 011051 339 HIPVVIGSQMRYEVTGDPLYKVTGTFFMDIVNASHGYATGGTSAGEFWSDPKRLASTLGTENEESCTTYNMLKV-SRHLF 417 (494)
Q Consensus 339 ~ip~~~G~a~~y~~TGD~~yl~a~~~~w~~v~~~~~y~TGG~g~~E~f~~~~~L~~~l~~~~~ETCas~n~lkl-~~~L~ 417 (494)
.|-++-|+.-.|.++|++-|+..+..+=|.+..--.-.++--=++=..+...--++. ....-+-+-+..+++ -+.|-
T Consensus 177 TIRvLGGLLSayHLsg~~~~L~kA~dlgdrLl~AF~sps~IPysdVnL~~~~A~~p~--~~~~SStaEvttiQlEfr~Ls 254 (546)
T KOG2431|consen 177 TIRVLGGLLSAYHLSGDEMFLNKAEDLGDRLLPAFSSPSPIPYSDVNLGTGTAHPPR--WTGDSSTAEVTTIQLEFRYLS 254 (546)
T ss_pred hHHHHhhhhhhhccccchhHHHHHHHHHHHHHHhhcCCCCCCcceeecCCCcccCCC--CCCccchhhheeeeeeHHHHH
Confidence 388889999999999999999999999888776433333221111000000000000 001122222334443 46789
Q ss_pred ccCCCCchHHHHHHHHhhhhhccCCCC-CCCeEEEecCC
Q 011051 418 RWTKEMVYADYYERALTNGVLSIQRGT-EPGVMIYMLPL 455 (494)
Q Consensus 418 ~~tgd~~YaD~~Er~LyN~iLa~~~~~-d~g~~~Y~~pL 455 (494)
++|||++|-+..|++. -+|.+--... ||=+-+|.||-
T Consensus 255 ~ltgd~kY~~~a~kv~-ehih~~~~~~~dGLvPi~in~~ 292 (546)
T KOG2431|consen 255 RLTGDPKYEELAEKVT-EHIHGLGKKKHDGLVPIFINPN 292 (546)
T ss_pred hhcCCchHHHHHHHHH-HHHhccCccccCCeeeEEEcCC
Confidence 9999999999999974 3443332221 44466888874
No 88
>COG1554 ATH1 Trehalose and maltose hydrolases (possible phosphorylases) [Carbohydrate transport and metabolism]
Probab=30.68 E-value=2.1e+02 Score=33.59 Aligned_cols=110 Identities=15% Similarity=0.196 Sum_probs=63.0
Q ss_pred CCCCCCccCCCcCccccchhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhC-CCcccccC-CchhHhhhhhcCCC
Q 011051 151 GKAYEGWEDPTCELRGHFVGHYLSASAHMWASTHNVTLKEKMTAVVSALSECQNKM-GSGYLSAF-PSEQFDRFEALKPV 228 (494)
Q Consensus 151 g~~~ggWe~~d~~lrGh~~G~~LsA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~-~dGYL~~~-p~~~~~~l~~~~~~ 228 (494)
|+.|+|--+-|+++ | +.+.+..+.=..-+.-+.+=...|-.||++. ..||.|+. |=+-++.-...++-
T Consensus 345 GegY~GhvfWDTEi-------f---~lP~l~~t~P~vArnLL~YR~~~L~~Ak~nA~~~G~~GAlyPW~S~~~G~E~t~~ 414 (772)
T COG1554 345 GEGYGGHVFWDTEI-------F---VLPFLLFTDPEVARNLLLYRYNTLPGAKENAKKYGLKGALYPWESATDGDECTPE 414 (772)
T ss_pred ccccCCeeeecchH-------H---hhhhhhccChHHHHHHHHHHHhcCHHHHHHHHHcCCCcccceeeecCCCCccCCc
Confidence 45677655555441 1 2233334433344556677777788888643 68999984 41111111112233
Q ss_pred Ccc---------------cchHHHHHHHHHHHHHHcCChhHH-----HHHHHHHHHHHHhhc
Q 011051 229 WAP---------------YYTIHKILAGLLDQYTFADNTQAL-----KMTKWMVEYFYNRVQ 270 (494)
Q Consensus 229 W~p---------------~Y~~hkl~~GLvd~y~~tG~~kaL-----~ia~r~aD~~~~~~~ 270 (494)
|+. ...-+-|--+...|+++|||++.| +++.-.|.+...+..
T Consensus 415 w~~~~~~~~~~~~~~~~E~Hin~dIAyAv~~Y~q~TgD~~yl~~~G~evl~etArFW~srv~ 476 (772)
T COG1554 415 WEATFERTGWRVASSDREIHINADIAYAVWNYWQVTGDDSYLADCGLEVLLETARFWASRVH 476 (772)
T ss_pred ccccccccccccCccccceehhhHHHHHHHHHHhhcCcHHHHHhcCHHHHHHHHHHHHHHhe
Confidence 432 222233445677889999999876 588888888877754
No 89
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=28.54 E-value=2.6e+02 Score=28.27 Aligned_cols=27 Identities=19% Similarity=0.204 Sum_probs=20.8
Q ss_pred hhHHHHHHHHHHHHHHHhhhCCCcccccC
Q 011051 186 VTLKEKMTAVVSALSECQNKMGSGYLSAF 214 (494)
Q Consensus 186 ~~L~~k~d~~Vd~l~~~Q~~~~dGYL~~~ 214 (494)
..+.+..+++|+.|.+||. +||.++.-
T Consensus 96 ~~i~~~~~~~~~~i~~~q~--~dGgf~~~ 122 (287)
T cd02894 96 NKIDENKEKIAKFIKGLQN--EDGSFSGD 122 (287)
T ss_pred hhccHHHHHHHHHHHHHcC--CCCCeecC
Confidence 3444457889999999999 89888753
No 90
>KOG0602 consensus Neutral trehalase [Carbohydrate transport and metabolism]
Probab=28.15 E-value=1.3e+02 Score=34.19 Aligned_cols=104 Identities=22% Similarity=0.357 Sum_probs=71.4
Q ss_pred CCCccCCCcCccccchhHHHHHHHHHHHhcCChhHHH-HHHHHHHHHHHHhhhCCCcccccCC------chhHhhhhhcC
Q 011051 154 YEGWEDPTCELRGHFVGHYLSASAHMWASTHNVTLKE-KMTAVVSALSECQNKMGSGYLSAFP------SEQFDRFEALK 226 (494)
Q Consensus 154 ~ggWe~~d~~lrGh~~G~~LsA~a~~~a~t~D~~L~~-k~d~~Vd~l~~~Q~~~~dGYL~~~p------~~~~~~l~~~~ 226 (494)
.|-|.+=|+.+-.|..+.+.+.++.+++..-++.=.+ .++.+++.+.+.=. ..|-+..| .+.|+ ..
T Consensus 406 ~g~w~DYd~~~~~~~~~~~~sn~~Pl~~~~~~~~~~~~~~~~v~~~le~~g~---~~~p~giP~Sl~~s~eQWD----~P 478 (600)
T KOG0602|consen 406 DGAWFDYDLELKKHNTYFYASNFAPLWAGCYPAPDDDKSVDKVLDYLEKSGA---LTFPGGIPTSLSNSGEQWD----FP 478 (600)
T ss_pred CCcceeccccccccCCCcCchhhhhhhccCCCcccccchHHHHHHHHHHcCC---cCCCCCCcccCCCchhhcc----CC
Confidence 5679988888899999999999999999766533333 45555555543321 22222222 34563 33
Q ss_pred CCCcccchHHHHHHHHHHHHHHcCChhHHHHHHHHH-HHHHHhhc
Q 011051 227 PVWAPYYTIHKILAGLLDQYTFADNTQALKMTKWMV-EYFYNRVQ 270 (494)
Q Consensus 227 ~~W~p~Y~~hkl~~GLvd~y~~tG~~kaL~ia~r~a-D~~~~~~~ 270 (494)
..|+|.=.+ +++|| +.+|++.+.+++.|+| .|+...+.
T Consensus 479 n~WaP~q~m--~~~gl----~~~~~~~~~~~A~kla~~wl~~~~~ 517 (600)
T KOG0602|consen 479 NGWAPNQHM--AIEGL----RRAGNQELQEVALKLAQRWLETNFA 517 (600)
T ss_pred CCCCcceeh--hhhhh----hhcCCHHHHHHHHHHHHHHHHHhhh
Confidence 579997544 88888 5669999999999998 67766653
No 91
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=26.94 E-value=65 Score=26.96 Aligned_cols=40 Identities=25% Similarity=0.133 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhCCCccc
Q 011051 169 VGHYLSASAHMWASTHNVTLKEKMTAVVSALSECQNKMGSGYL 211 (494)
Q Consensus 169 ~G~~LsA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYL 211 (494)
+..-..+++.+.....++. .+.+++.|+.|..+|. +||=+
T Consensus 72 ~~~t~~~l~~l~~~~~~~~-~~~~~~a~~~l~~~Q~--~dGg~ 111 (113)
T PF13249_consen 72 VYTTYVALAALELLGRPDD-EEAVRKAVDWLLSCQN--PDGGW 111 (113)
T ss_dssp HHHHHHHHHHHHHHT-GGC-HTTHCCHHHHHHHTB---TTSSB
T ss_pred HHHHHHHHHHHHHcCCCcc-cHHHHHHHHHHHHhcC--CCCCC
Confidence 5555555555444443333 7778889999999999 77743
No 92
>PLN00119 endoglucanase
Probab=26.94 E-value=2.2e+02 Score=31.62 Aligned_cols=64 Identities=17% Similarity=0.155 Sum_probs=40.5
Q ss_pred hhHHHHHHHHHHHHhhcCceecccCCCCCCCCCCCcccccCCCCccccchhhHHHHHHHHHhccCCCCchHHHHHHH
Q 011051 356 PLYKVTGTFFMDIVNASHGYATGGTSAGEFWSDPKRLASTLGTENEESCTTYNMLKVSRHLFRWTKEMVYADYYERA 432 (494)
Q Consensus 356 ~~yl~a~~~~w~~v~~~~~y~TGG~g~~E~f~~~~~L~~~l~~~~~ETCas~n~lkl~~~L~~~tgd~~YaD~~Er~ 432 (494)
.+++++++.+|+...+++..-...+...+. .|..+.-.=+++--+-.|++.|||.+|.++++..
T Consensus 202 ~~lL~~Ak~~y~fA~~~~g~y~~~~~~~~g-------------~Y~ss~~~DEl~WAAawLY~aTgd~~Yl~~~~~~ 265 (489)
T PLN00119 202 SILIGHAKDLFEFAKAHPGLYQNSIPNAGG-------------FYASSGYEDELLWAAAWLHRATNDQTYLDYLTQA 265 (489)
T ss_pred HHHHHHHHHHHHHHHhCCCcccCCCCCCCC-------------CCCCCchhhHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 457999999999988765321111111111 2333333345666667799999999999998743
No 93
>PLN03009 cellulase
Probab=26.57 E-value=9.2e+02 Score=26.82 Aligned_cols=25 Identities=16% Similarity=0.240 Sum_probs=22.2
Q ss_pred CChhHHHHHHHHHHHHhh----cCceecc
Q 011051 354 GDPLYKVTGTFFMDIVNA----SHGYATG 378 (494)
Q Consensus 354 GD~~yl~a~~~~w~~v~~----~~~y~TG 378 (494)
++++|++.++..++-|.. .++|+||
T Consensus 374 ~~~~y~~~A~~Q~dYiLG~Np~~~SYVvG 402 (495)
T PLN03009 374 GPDSLRQQAKRQVDYILGDNPMGLSYMVG 402 (495)
T ss_pred CHHHHHHHHHHHHHHhcCCCCCCCceEec
Confidence 678999999999999986 5799998
No 94
>PLN02340 endoglucanase
Probab=26.40 E-value=1e+03 Score=27.30 Aligned_cols=27 Identities=15% Similarity=-0.047 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHH
Q 011051 237 KILAGLLDQYTFADNTQALKMTKWMVE 263 (494)
Q Consensus 237 kl~~GLvd~y~~tG~~kaL~ia~r~aD 263 (494)
.++=|++-.|++||+++.|+.+.+..+
T Consensus 240 El~WAAawLy~ATgd~~Yl~~~~~~~~ 266 (614)
T PLN02340 240 ELLWAAAWLYRATGDEYYLKYVVDNAV 266 (614)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 467788899999999999998877655
No 95
>KOG2429 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=24.70 E-value=2.4e+02 Score=31.83 Aligned_cols=197 Identities=21% Similarity=0.173 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHcCC------------hhHHHHHHHHHHHHHHhhcccccccchhhh---hhhhcc---cc--cchH---
Q 011051 237 KILAGLLDQYTFADN------------TQALKMTKWMVEYFYNRVQNVITKYSVERH---WNSLNE---ET--GGMN--- 293 (494)
Q Consensus 237 kl~~GLvd~y~~tG~------------~kaL~ia~r~aD~~~~~~~~~~~k~~~~~~---~~~l~~---e~--GGm~--- 293 (494)
.++-||+.+|.++.+ -.+|.+|..+|+-+.-.|... ...|.... ...... |. .|+-
T Consensus 124 RVlGGLLSAHllA~~~~~~~~~~~~y~g~LLrLA~dlA~RLLPAF~T~-TGiPy~~vNLk~GV~~~Et~~tctAg~gsll 202 (622)
T KOG2429|consen 124 RVLGGLLSAHLLAKKDPVGVFLGPDYDGELLRLAEDLARRLLPAFETP-TGIPYGRVNLKYGVDKGETTETCTAGAGSLL 202 (622)
T ss_pred hhhhhHHHHHHhhccCccCccccCCCCchHHHHHHHHHHhhcccccCC-CCCCcceeehhcCCCCCCCcceeccccccee
Confidence 477889999998822 247888888887666555431 11222111 000000 00 0111
Q ss_pred HHHHHHHHhcCChhHHHHHhhhcccc-----cchhhhhcCCCCCCCcccc------hHH-HHHHHHHHHHHhCChhHHHH
Q 011051 294 DVLYRLYTITQDPKHLLLAHLFDKPC-----FLGLLAVQADDISGFHANT------HIP-VVIGSQMRYEVTGDPLYKVT 361 (494)
Q Consensus 294 eaL~~LY~iTGd~ryL~lA~~F~~~~-----~~~~la~~~d~l~~~HAnt------~ip-~~~G~a~~y~~TGD~~yl~a 361 (494)
--+--|=++|||++|-+.|++-.+.- -.+-+....|+..|..... .|- .+.=+.+-|-+=||++|++.
T Consensus 203 lEFg~LSrLTGD~~fE~vA~~A~~~lW~~RS~igLlGn~idV~tG~W~~~~sGIGAgiDSfyEYllK~yILfgd~e~lem 282 (622)
T KOG2429|consen 203 LEFGTLSRLTGDPKFEKVARRALDALWSLRSGIGLLGNHIDVQTGEWTAPDSGIGAGIDSFYEYLLKGYILFGDPELLEM 282 (622)
T ss_pred eehhhhHHhhCCcHHHHHHHHHHHHHHhhcCCCCcccceeeccccceeccccccccchHHHHHHHHHHheecCCHHHHHH
Confidence 01223778899999999998764432 1222222222222211100 011 12334466777899999876
Q ss_pred HHHHHHHHh----hcCcee-----cccCCC-----CCCCCCCC-ccccc--------------------CC-------CC
Q 011051 362 GTFFMDIVN----ASHGYA-----TGGTSA-----GEFWSDPK-RLAST--------------------LG-------TE 399 (494)
Q Consensus 362 ~~~~w~~v~----~~~~y~-----TGG~g~-----~E~f~~~~-~L~~~--------------------l~-------~~ 399 (494)
-......+. +..-|+ +|.++. -|+|.+.= .|..+ +| ..
T Consensus 283 f~ea~~ai~~y~r~~~wY~~V~m~~G~v~~p~~dSLqAfwpGlqvLaGDvd~A~~~h~~y~~vwkkyG~lPEryN~~~~~ 362 (622)
T KOG2429|consen 283 FNEAYEAIQKYTRKGPWYVNVNMDSGSVSLPWFDSLQAFWPGLQVLAGDVDDAIRTHLMYFSVWKKYGFLPERYNLATQE 362 (622)
T ss_pred HHHHHHHHHHHhhcCCeEEEEecCCCceehHHHhhHHhhccchhhhhcchHHHHHHHHHHHHHHHHcCCCcccccccCCC
Confidence 665555443 334443 454441 23333311 01000 00 01
Q ss_pred ccccchh----hHHHHHHHHHhccCCCCchHHHHHHHHh
Q 011051 400 NEESCTT----YNMLKVSRHLFRWTKEMVYADYYERALT 434 (494)
Q Consensus 400 ~~ETCas----~n~lkl~~~L~~~tgd~~YaD~~Er~Ly 434 (494)
..+.=.. .+++-++-.|++.|+|+.|.++=|..|=
T Consensus 363 ~~~~~~~YPLRPElvEStyyLYrATkdp~yL~vG~~~l~ 401 (622)
T KOG2429|consen 363 PPPKREGYPLRPELVESTYYLYRATKDPFYLHVGEDMLK 401 (622)
T ss_pred CCCCcccCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 1112222 4677889999999999999998776653
No 96
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=24.59 E-value=2.7e+02 Score=31.97 Aligned_cols=96 Identities=16% Similarity=0.124 Sum_probs=55.1
Q ss_pred HHHHcCChhHHHHHHH----------HHHHHHHhhcccccccchhhhhhhhcccccchHHHHHHHHHhcCChhHHHHHhh
Q 011051 245 QYTFADNTQALKMTKW----------MVEYFYNRVQNVITKYSVERHWNSLNEETGGMNDVLYRLYTITQDPKHLLLAHL 314 (494)
Q Consensus 245 ~y~~tG~~kaL~ia~r----------~aD~~~~~~~~~~~k~~~~~~~~~l~~e~GGm~eaL~~LY~iTGd~ryL~lA~~ 314 (494)
+|-+-|++++|.-+-| +++++.+.|.. +++.. -|+-..|.+-|..||...|.+
T Consensus 412 ~YlAl~Kk~vL~~L~k~a~~~~~~~k~~~Fl~ndF~~-------~rwr~----------AAlKNAyaLlsk~Ry~~AAaF 474 (631)
T PF12234_consen 412 FYLALGKKKVLAGLWKMASWHKEQQKMAKFLSNDFTE-------PRWRT----------AALKNAYALLSKHRYEYAAAF 474 (631)
T ss_pred HHHHhccHHHHHHHHHhhhcccccHHHHHHHhhcCCC-------hHHHH----------HHHHhHHHHHhcccHHHHHHH
Confidence 4566677777766666 34444444422 23322 278889999999999999999
Q ss_pred hcccc-cchhhhhcCCCCCCCcccchHHHHHHHHHHHHHhCChhHHHHHH
Q 011051 315 FDKPC-FLGLLAVQADDISGFHANTHIPVVIGSQMRYEVTGDPLYKVTGT 363 (494)
Q Consensus 315 F~~~~-~~~~la~~~d~l~~~HAnt~ip~~~G~a~~y~~TGD~~yl~a~~ 363 (494)
|.=-. +-+....-.. .+ .-+.+.+.++|+|+-.+.|-+++..+
T Consensus 475 FLLag~l~dAv~V~~~---~l---~D~qLAi~i~Rl~e~d~gp~~~~ll~ 518 (631)
T PF12234_consen 475 FLLAGSLKDAVNVCLR---QL---NDPQLAIAIARLYEGDNGPVLKKLLE 518 (631)
T ss_pred HHhcccHHHHHHHHHH---Hc---cChhHHHHHHHHHcCCCchHHHHHHH
Confidence 94211 1111100000 00 12566788888888665565554443
No 97
>PLN02993 lupeol synthase
Probab=24.45 E-value=8.1e+02 Score=28.92 Aligned_cols=98 Identities=10% Similarity=0.068 Sum_probs=56.8
Q ss_pred hhHHHHHHHHHHHhcC----ChhHHHHHHHHHHHHHHHhhhCCCcccccCCch---hHhhhhhcCCC-------Ccccch
Q 011051 169 VGHYLSASAHMWASTH----NVTLKEKMTAVVSALSECQNKMGSGYLSAFPSE---QFDRFEALKPV-------WAPYYT 234 (494)
Q Consensus 169 ~G~~LsA~a~~~a~t~----D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~~~p~~---~~~~l~~~~~~-------W~p~Y~ 234 (494)
...-|.|+..+-.... ++.-.+++.+-|+.|..-|. .||=+++|... .|-+.-...+. -.--+|
T Consensus 488 TAe~lka~l~l~~~~~~~~~~~~~~~~l~~av~wlL~mQn--~dGG~aafe~~~~~~~le~ln~ae~f~~~miD~~~~dc 565 (763)
T PLN02993 488 TAEALKCCMLLSMMPADVVGQKIDPEQLYDSVNLLLSLQS--ENGGVTAWEPVRAYKWLELLNPTDFFANTMVEREYVEC 565 (763)
T ss_pred hHHHHHHHHHHhhCccccccccchHHHHHHHHHHHHhhcc--CCCCEEeeeCCCchhHHHcCCHHHhhcCcccCCCCcCH
Confidence 5666665433332222 34455899999999999999 88888888321 22111000011 112467
Q ss_pred HHHHHHHHHHHHHHcCC---hhHHHHHHHHHHHHHHh
Q 011051 235 IHKILAGLLDQYTFADN---TQALKMTKWMVEYFYNR 268 (494)
Q Consensus 235 ~hkl~~GLvd~y~~tG~---~kaL~ia~r~aD~~~~~ 268 (494)
-...+++|...-....+ ++.-..+.|.++|+.+.
T Consensus 566 T~~vl~aL~~~~~~~p~~r~~ei~~~i~rAv~yL~~~ 602 (763)
T PLN02993 566 TSAVIQALVLFKQLYPDHRTKEIIKSIEKAVQFIESK 602 (763)
T ss_pred HHHHHHHHHHhcccCcchhhhhHHHHHHHHHHHHHHh
Confidence 78899988765332222 33345677788888763
No 98
>PLN02345 endoglucanase
Probab=22.56 E-value=3.2e+02 Score=30.24 Aligned_cols=61 Identities=11% Similarity=0.183 Sum_probs=37.7
Q ss_pred hhHHHHHHHHHHHHhhcCc-eecccCCCCCCCCCCCcccccCCCCccccchhhHHHHHHHHHhccCCCCchHHHHH
Q 011051 356 PLYKVTGTFFMDIVNASHG-YATGGTSAGEFWSDPKRLASTLGTENEESCTTYNMLKVSRHLFRWTKEMVYADYYE 430 (494)
Q Consensus 356 ~~yl~a~~~~w~~v~~~~~-y~TGG~g~~E~f~~~~~L~~~l~~~~~ETCas~n~lkl~~~L~~~tgd~~YaD~~E 430 (494)
.+++++++.+|+...+++. |... +.....|-. ++--.=+++.=+-.|++.|||.+|.+++.
T Consensus 167 ~~lL~~Ak~ly~fa~~~~g~y~~~-~~~~~~~Y~-------------s~~~~DEl~WAAawLy~ATgd~~Yl~~~~ 228 (469)
T PLN02345 167 DTLLKHAKQLFNFADKYRGSYSES-IPEVQDYYN-------------STGYGDELLWAASWLYHATGDKTYLAYVT 228 (469)
T ss_pred HHHHHHHHHHHHHHHhCCCcccCC-CCccCCCCC-------------CcccccHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4679999999999887653 3211 222222221 11111345545566899999999999884
No 99
>PLN02266 endoglucanase
Probab=21.82 E-value=3.4e+02 Score=30.37 Aligned_cols=66 Identities=17% Similarity=0.118 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHHHHhhcCceecccCCCCCCCCCCCcccccCCCCccccchhhHHHHHHHHHhccCCCCchHHHHHHH
Q 011051 356 PLYKVTGTFFMDIVNASHGYATGGTSAGEFWSDPKRLASTLGTENEESCTTYNMLKVSRHLFRWTKEMVYADYYERA 432 (494)
Q Consensus 356 ~~yl~a~~~~w~~v~~~~~y~TGG~g~~E~f~~~~~L~~~l~~~~~ETCas~n~lkl~~~L~~~tgd~~YaD~~Er~ 432 (494)
.+++++++.+|+...+++.....++.+. ..++- ...+.-.=+++.-+-.|++.|||.+|.|.++..
T Consensus 215 ~~~L~~Ak~ly~fa~~~~g~y~~~~~~~---~~~~y--------~s~s~~~DEl~WAAawLy~ATGd~~Yl~~~~~~ 280 (510)
T PLN02266 215 KLLVRRAIRVFQFADKYRGAYSNGLKPD---VCPFY--------CSYSGYQDELLWGAAWLHKATKNPTYLNYIQVN 280 (510)
T ss_pred HHHHHHHHHHHHHHHhCCCCccCCCCcc---cCCCc--------ccCCcchHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4679999999999887763222222111 11110 001111234444556799999999999998763
No 100
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=20.84 E-value=4.6e+02 Score=29.99 Aligned_cols=82 Identities=13% Similarity=0.081 Sum_probs=52.9
Q ss_pred hhHHHHHHHHHHHhcC---ChhHHHHHHHHHHHHHHHhhhCCCcccccCCchhHhhhhhcCCCCcccchHHHHHHHHHHH
Q 011051 169 VGHYLSASAHMWASTH---NVTLKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFEALKPVWAPYYTIHKILAGLLDQ 245 (494)
Q Consensus 169 ~G~~LsA~a~~~a~t~---D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~~~p~~~~~~l~~~~~~W~p~Y~~hkl~~GLvd~ 245 (494)
.++-|+|++....... .+++.+.+++.|+.|.+.|. +||-.... |.. ...|.....++||.+
T Consensus 453 Ta~~l~aL~~~~~~~~~~~~~~i~~ai~rav~~L~~~Q~--~dGsW~g~----Wg~--------~~~Y~T~~al~aL~~- 517 (634)
T TIGR03463 453 TSSCLQALAAWRKHHPHVPDGRITRAISRGVRFLRSRQR--EDGSFPGS----WGV--------CFTYGTFHGVMGLRA- 517 (634)
T ss_pred HHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHhcC--CCCCcccc----CCC--------CCcHHHHHHHHHHHH-
Confidence 5777888877654333 24667789999999999999 78654321 110 123555566666643
Q ss_pred HHHcCChhHHHHHHHHHHHHHHh
Q 011051 246 YTFADNTQALKMTKWMVEYFYNR 268 (494)
Q Consensus 246 y~~tG~~kaL~ia~r~aD~~~~~ 268 (494)
.|.+.--..+.|.++|+.+.
T Consensus 518 ---~G~~~~~~~i~rA~~~Ll~~ 537 (634)
T TIGR03463 518 ---AGASPDDMALQRAAAWLRSY 537 (634)
T ss_pred ---cCCCcCcHHHHHHHHHHHHc
Confidence 45543347788888998764
Done!