Query 011052
Match_columns 494
No_of_seqs 517 out of 3022
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 07:34:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011052.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011052hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11634 ATP-dependent RNA hel 100.0 2.8E-52 6E-57 454.5 44.5 344 1-354 161-547 (629)
2 KOG0331 ATP-dependent RNA heli 100.0 9.9E-44 2.1E-48 368.4 18.8 206 1-206 251-460 (519)
3 COG0513 SrmB Superfamily II DN 100.0 6.6E-41 1.4E-45 358.5 22.8 217 1-218 186-406 (513)
4 KOG0328 Predicted ATP-dependen 100.0 4.3E-41 9.3E-46 317.3 17.9 213 1-216 181-395 (400)
5 KOG0342 ATP-dependent RNA heli 100.0 2.4E-40 5.2E-45 333.1 21.6 270 1-274 242-521 (543)
6 KOG0330 ATP-dependent RNA heli 100.0 6.1E-40 1.3E-44 321.6 19.6 211 1-214 216-427 (476)
7 KOG0333 U5 snRNP-like RNA heli 100.0 1.3E-39 2.8E-44 329.1 18.2 199 1-202 408-632 (673)
8 PRK11776 ATP-dependent RNA hel 100.0 1.7E-37 3.8E-42 329.9 28.5 285 1-352 159-444 (460)
9 KOG0336 ATP-dependent RNA heli 100.0 1.3E-37 2.9E-42 306.1 16.5 204 1-205 379-583 (629)
10 KOG0343 RNA Helicase [RNA proc 100.0 4.9E-37 1.1E-41 311.8 20.6 212 1-214 227-442 (758)
11 KOG0345 ATP-dependent RNA heli 100.0 3.3E-37 7.2E-42 308.5 18.3 219 1-220 169-390 (567)
12 KOG0338 ATP-dependent RNA heli 100.0 2.2E-36 4.7E-41 304.7 14.8 202 1-205 339-544 (691)
13 KOG0326 ATP-dependent RNA heli 100.0 7.2E-36 1.6E-40 286.1 15.5 210 1-214 239-449 (459)
14 KOG0340 ATP-dependent RNA heli 100.0 7.5E-35 1.6E-39 282.9 21.3 216 1-216 165-383 (442)
15 KOG0341 DEAD-box protein abstr 100.0 2.9E-36 6.4E-41 294.9 9.4 191 1-195 338-529 (610)
16 PTZ00110 helicase; Provisional 100.0 7.4E-34 1.6E-38 306.7 22.7 206 1-207 289-497 (545)
17 PRK10590 ATP-dependent RNA hel 100.0 1.3E-33 2.9E-38 299.5 22.8 210 1-213 161-371 (456)
18 PRK04837 ATP-dependent RNA hel 100.0 1.4E-33 3.1E-38 296.8 21.3 210 1-213 169-381 (423)
19 KOG0327 Translation initiation 100.0 6.8E-34 1.5E-38 279.8 17.3 210 1-215 181-391 (397)
20 KOG0332 ATP-dependent RNA heli 100.0 8.7E-34 1.9E-38 276.9 17.8 214 4-220 248-470 (477)
21 PRK04537 ATP-dependent RNA hel 100.0 2.9E-33 6.2E-38 303.4 22.8 208 1-211 171-381 (572)
22 KOG0335 ATP-dependent RNA heli 100.0 7.8E-34 1.7E-38 290.3 16.4 201 1-203 238-453 (482)
23 PRK11192 ATP-dependent RNA hel 100.0 9.6E-32 2.1E-36 283.9 22.9 208 1-211 159-369 (434)
24 PLN00206 DEAD-box ATP-dependen 100.0 1E-31 2.3E-36 288.9 22.7 204 1-207 282-488 (518)
25 KOG0346 RNA helicase [RNA proc 100.0 2.2E-31 4.8E-36 264.7 18.4 205 1-206 182-422 (569)
26 PRK01297 ATP-dependent RNA hel 100.0 7.8E-31 1.7E-35 279.9 23.2 208 1-211 249-459 (475)
27 KOG0339 ATP-dependent RNA heli 100.0 2.6E-31 5.7E-36 267.7 17.9 200 1-202 382-583 (731)
28 PTZ00424 helicase 45; Provisio 100.0 5.9E-30 1.3E-34 267.4 21.4 212 1-215 182-395 (401)
29 KOG0348 ATP-dependent RNA heli 100.0 1.1E-30 2.4E-35 264.9 13.2 207 1-207 299-567 (708)
30 KOG0334 RNA helicase [RNA proc 100.0 6.3E-30 1.4E-34 278.1 17.3 204 1-206 527-732 (997)
31 KOG0347 RNA helicase [RNA proc 100.0 8.6E-31 1.9E-35 266.4 8.6 223 1-227 352-603 (731)
32 TIGR03817 DECH_helic helicase/ 100.0 7.8E-28 1.7E-32 267.5 25.2 233 6-246 173-440 (742)
33 KOG0337 ATP-dependent RNA heli 100.0 4.1E-29 8.9E-34 247.5 12.1 214 1-216 176-390 (529)
34 KOG4284 DEAD box protein [Tran 99.9 1.4E-27 3.1E-32 246.4 15.9 196 4-202 183-388 (980)
35 PLN03137 ATP-dependent DNA hel 99.9 7.3E-27 1.6E-31 260.1 21.6 199 1-204 593-797 (1195)
36 TIGR00614 recQ_fam ATP-depende 99.9 3.1E-26 6.7E-31 244.1 24.4 196 2-204 140-343 (470)
37 PHA02653 RNA helicase NPH-II; 99.9 9.8E-26 2.1E-30 245.9 23.4 231 8-271 308-566 (675)
38 TIGR01970 DEAH_box_HrpB ATP-de 99.9 7.8E-26 1.7E-30 251.9 20.8 244 1-274 126-397 (819)
39 KOG0344 ATP-dependent RNA heli 99.9 3.4E-26 7.3E-31 235.9 15.2 199 5-206 305-507 (593)
40 PRK11057 ATP-dependent DNA hel 99.9 2.7E-25 5.8E-30 243.3 21.9 189 6-203 158-352 (607)
41 PRK11664 ATP-dependent RNA hel 99.9 2.2E-25 4.7E-30 248.8 19.9 240 11-280 140-406 (812)
42 TIGR02621 cas3_GSU0051 CRISPR- 99.9 6.6E-25 1.4E-29 241.1 18.7 183 2-191 182-388 (844)
43 TIGR01389 recQ ATP-dependent D 99.9 1.1E-23 2.3E-28 230.8 21.0 189 6-203 146-340 (591)
44 PRK09751 putative ATP-dependen 99.9 6.7E-23 1.4E-27 237.0 24.2 253 6-269 145-461 (1490)
45 PRK11131 ATP-dependent RNA hel 99.9 3.3E-23 7.2E-28 235.8 20.9 240 1-271 199-469 (1294)
46 KOG0350 DEAD-box ATP-dependent 99.9 1.7E-23 3.7E-28 211.6 15.0 191 16-207 356-553 (620)
47 TIGR00580 mfd transcription-re 99.9 1.2E-22 2.6E-27 228.8 21.8 191 8-205 587-787 (926)
48 PRK13767 ATP-dependent helicas 99.9 7.2E-22 1.6E-26 223.9 25.2 254 9-269 196-474 (876)
49 PRK10689 transcription-repair 99.9 3.8E-22 8.3E-27 229.1 21.7 188 11-205 739-936 (1147)
50 TIGR01587 cas3_core CRISPR-ass 99.9 1.7E-22 3.6E-27 208.2 16.1 179 10-194 144-336 (358)
51 TIGR01967 DEAH_box_HrpA ATP-de 99.9 8.3E-22 1.8E-26 225.1 20.8 242 1-273 192-464 (1283)
52 COG0514 RecQ Superfamily II DN 99.9 9.3E-22 2E-26 208.4 19.7 192 6-205 150-348 (590)
53 PRK12898 secA preprotein trans 99.9 1.3E-21 2.9E-26 210.8 15.3 169 22-196 410-588 (656)
54 PRK02362 ski2-like helicase; P 99.9 8.8E-21 1.9E-25 212.5 21.7 190 2-195 150-398 (737)
55 KOG0329 ATP-dependent RNA heli 99.9 2.4E-22 5.3E-27 188.0 5.6 168 5-208 202-370 (387)
56 PRK10917 ATP-dependent DNA hel 99.9 2.1E-20 4.5E-25 207.1 21.1 188 11-204 400-603 (681)
57 PRK00254 ski2-like helicase; P 99.9 3.6E-20 7.7E-25 207.1 23.2 224 1-230 150-423 (720)
58 PRK04914 ATP-dependent helicas 99.8 1.6E-20 3.4E-25 211.1 18.5 163 73-236 479-647 (956)
59 TIGR00643 recG ATP-dependent D 99.8 6.8E-20 1.5E-24 201.7 20.0 166 20-191 386-563 (630)
60 KOG0349 Putative DEAD-box RNA 99.8 2.5E-20 5.4E-25 185.5 13.4 190 1-193 375-614 (725)
61 PRK01172 ski2-like helicase; P 99.8 9.1E-19 2E-23 194.8 21.9 188 2-195 148-379 (674)
62 PRK09401 reverse gyrase; Revie 99.8 1.9E-19 4.1E-24 207.5 14.2 163 4-180 227-430 (1176)
63 PRK09200 preprotein translocas 99.8 1.6E-18 3.6E-23 190.7 20.0 169 22-196 365-543 (790)
64 PRK05298 excinuclease ABC subu 99.8 4E-18 8.6E-23 187.7 22.1 139 76-215 434-587 (652)
65 PRK14701 reverse gyrase; Provi 99.8 1E-18 2.2E-23 205.7 14.6 187 4-202 226-464 (1638)
66 TIGR03158 cas3_cyano CRISPR-as 99.8 7.7E-18 1.7E-22 173.4 18.1 158 11-179 172-357 (357)
67 TIGR01054 rgy reverse gyrase. 99.8 4E-18 8.8E-23 196.8 17.8 150 4-166 225-409 (1171)
68 KOG0351 ATP-dependent DNA heli 99.8 6.5E-18 1.4E-22 188.7 18.5 194 6-205 404-603 (941)
69 TIGR00963 secA preprotein tran 99.8 3.7E-18 8.1E-23 185.4 14.8 168 22-196 342-519 (745)
70 TIGR00631 uvrb excinuclease AB 99.8 1.1E-17 2.4E-22 183.2 18.5 128 76-204 430-563 (655)
71 TIGR03714 secA2 accessory Sec 99.8 5.3E-18 1.1E-22 185.2 15.1 167 22-196 361-539 (762)
72 cd00079 HELICc Helicase superf 99.8 1.1E-17 2.4E-22 146.0 12.9 127 63-190 3-131 (131)
73 PHA02558 uvsW UvsW helicase; P 99.8 2.5E-17 5.5E-22 176.9 18.3 112 74-185 329-443 (501)
74 COG1111 MPH1 ERCC4-like helica 99.7 6.9E-18 1.5E-22 172.4 12.4 122 72-194 347-481 (542)
75 COG1201 Lhr Lhr-like helicases 99.7 2.3E-16 4.9E-21 173.3 23.1 211 10-225 174-396 (814)
76 COG1643 HrpA HrpA-like helicas 99.7 5.9E-17 1.3E-21 179.1 18.4 236 10-273 185-448 (845)
77 PRK12906 secA preprotein trans 99.7 3E-17 6.6E-22 179.7 13.5 167 22-195 377-554 (796)
78 COG1202 Superfamily II helicas 99.7 2.3E-16 5E-21 162.5 18.4 175 14-195 366-554 (830)
79 KOG0922 DEAH-box RNA helicase 99.7 9E-17 1.9E-21 169.0 15.6 234 11-273 187-450 (674)
80 PRK12900 secA preprotein trans 99.7 1.4E-16 3.1E-21 175.6 12.9 169 22-196 535-713 (1025)
81 KOG0923 mRNA splicing factor A 99.7 3.6E-16 7.7E-21 163.2 14.5 242 19-287 409-681 (902)
82 PF00271 Helicase_C: Helicase 99.7 1E-16 2.2E-21 128.0 6.9 76 107-182 2-78 (78)
83 PRK09694 helicase Cas3; Provis 99.7 2.7E-15 5.9E-20 168.1 18.8 107 74-183 546-664 (878)
84 KOG0352 ATP-dependent DNA heli 99.7 1.6E-16 3.5E-21 158.5 8.0 179 19-203 175-371 (641)
85 TIGR00603 rad25 DNA repair hel 99.6 2.3E-15 4.9E-20 164.6 16.2 119 73-195 480-608 (732)
86 PRK13766 Hef nuclease; Provisi 99.6 1.1E-15 2.4E-20 172.9 14.1 121 72-193 346-478 (773)
87 KOG0354 DEAD-box like helicase 99.6 2.9E-15 6.4E-20 161.2 15.1 123 72-196 394-531 (746)
88 COG1204 Superfamily II helicas 99.6 1E-14 2.2E-19 161.9 17.2 175 18-193 178-407 (766)
89 COG1200 RecG RecG-like helicas 99.6 1.9E-14 4E-19 153.1 17.1 177 13-195 403-592 (677)
90 KOG0924 mRNA splicing factor A 99.6 1.7E-14 3.6E-19 151.0 14.4 225 19-270 499-755 (1042)
91 TIGR00595 priA primosomal prot 99.5 9.7E-14 2.1E-18 148.7 16.4 93 101-193 271-380 (505)
92 KOG0920 ATP-dependent RNA heli 99.5 2.3E-13 4.9E-18 150.5 18.7 246 4-269 303-603 (924)
93 PRK05580 primosome assembly pr 99.5 3E-13 6.5E-18 149.9 17.6 102 100-201 438-556 (679)
94 KOG0353 ATP-dependent DNA heli 99.5 1.1E-13 2.4E-18 136.5 12.3 187 6-196 234-469 (695)
95 smart00490 HELICc helicase sup 99.5 3.8E-14 8.3E-19 113.1 7.6 80 103-182 2-82 (82)
96 KOG0925 mRNA splicing factor A 99.5 1.4E-12 3E-17 132.6 19.0 231 10-273 182-448 (699)
97 COG0556 UvrB Helicase subunit 99.5 1.3E-12 2.8E-17 134.4 17.1 168 20-196 386-559 (663)
98 COG4098 comFA Superfamily II D 99.5 3E-12 6.5E-17 125.5 17.6 175 18-197 231-419 (441)
99 PRK12904 preprotein translocas 99.4 7.5E-13 1.6E-17 146.1 14.3 167 22-195 367-574 (830)
100 COG1205 Distinct helicase fami 99.4 1.5E-12 3.3E-17 146.5 17.0 194 10-207 222-437 (851)
101 COG1203 CRISPR-associated heli 99.4 6.8E-13 1.5E-17 148.4 14.0 172 20-194 370-550 (733)
102 KOG0950 DNA polymerase theta/e 99.4 1.1E-12 2.3E-17 142.9 13.5 115 88-202 460-619 (1008)
103 PRK13104 secA preprotein trans 99.4 1.2E-12 2.6E-17 144.7 14.1 168 22-195 381-588 (896)
104 COG1197 Mfd Transcription-repa 99.4 2.2E-12 4.8E-17 144.4 16.0 187 11-204 733-929 (1139)
105 PRK13107 preprotein translocas 99.4 2.9E-12 6.3E-17 141.4 13.9 169 22-196 386-593 (908)
106 KOG0947 Cytoplasmic exosomal R 99.3 1.4E-11 2.9E-16 133.8 15.0 106 89-194 568-723 (1248)
107 KOG0331 ATP-dependent RNA heli 99.3 1.7E-11 3.7E-16 128.6 14.6 255 88-356 165-464 (519)
108 KOG0926 DEAH-box RNA helicase 99.3 1.5E-11 3.3E-16 131.2 13.5 117 114-244 607-741 (1172)
109 KOG4150 Predicted ATP-dependen 99.3 1.8E-10 3.9E-15 119.1 20.4 224 19-246 450-695 (1034)
110 KOG0335 ATP-dependent RNA heli 99.3 4.4E-12 9.6E-17 130.9 7.6 245 89-371 153-469 (482)
111 KOG0952 DNA/RNA helicase MER3/ 99.3 2.2E-10 4.8E-15 125.8 18.6 175 18-196 273-493 (1230)
112 KOG0951 RNA helicase BRR2, DEA 99.3 1.4E-10 2.9E-15 129.0 17.0 175 19-198 473-706 (1674)
113 PLN03142 Probable chromatin-re 99.2 6.2E-11 1.3E-15 134.7 14.1 134 72-205 470-612 (1033)
114 PRK10590 ATP-dependent RNA hel 99.2 2.6E-10 5.7E-15 121.5 16.2 247 90-352 77-363 (456)
115 PF08152 GUCT: GUCT (NUC152) d 99.2 1.3E-11 2.9E-16 102.4 4.9 95 269-370 1-97 (97)
116 COG1061 SSL2 DNA or RNA helica 99.2 1.3E-10 2.7E-15 123.1 11.5 102 78-180 273-375 (442)
117 KOG0948 Nuclear exosomal RNA h 99.2 1.1E-10 2.4E-15 124.0 10.7 107 88-194 383-539 (1041)
118 KOG0339 ATP-dependent RNA heli 99.1 2.7E-09 6E-14 109.4 14.5 257 90-370 298-603 (731)
119 PRK11448 hsdR type I restricti 99.0 1.5E-09 3.2E-14 125.6 13.7 93 88-182 698-801 (1123)
120 COG4581 Superfamily II RNA hel 98.9 1.6E-08 3.6E-13 113.7 16.3 104 89-192 380-535 (1041)
121 PRK12903 secA preprotein trans 98.9 4.1E-08 8.8E-13 108.2 17.5 167 22-195 363-540 (925)
122 KOG0921 Dosage compensation co 98.9 3.4E-07 7.4E-12 99.6 23.8 105 88-193 643-773 (1282)
123 PRK12326 preprotein translocas 98.9 2.3E-08 4.9E-13 108.7 13.9 168 22-195 364-548 (764)
124 KOG0953 Mitochondrial RNA heli 98.9 8.7E-09 1.9E-13 106.9 9.8 157 42-202 311-484 (700)
125 COG0513 SrmB Superfamily II DN 98.8 3.4E-09 7.3E-14 114.3 6.1 237 91-341 102-380 (513)
126 COG1198 PriA Primosomal protei 98.8 7.2E-08 1.6E-12 106.1 16.2 193 7-202 337-611 (730)
127 PRK04537 ATP-dependent RNA hel 98.8 2.2E-07 4.8E-12 101.6 18.7 68 89-160 85-164 (572)
128 COG1110 Reverse gyrase [DNA re 98.8 9.9E-08 2.2E-12 105.4 15.6 131 19-165 275-416 (1187)
129 PRK12899 secA preprotein trans 98.8 4.9E-08 1.1E-12 108.6 12.8 168 22-195 505-682 (970)
130 PRK12901 secA preprotein trans 98.8 4.6E-08 1E-12 109.2 12.0 167 23-195 566-742 (1112)
131 PRK13103 secA preprotein trans 98.7 1E-07 2.2E-12 106.0 11.8 168 22-195 386-592 (913)
132 KOG0336 ATP-dependent RNA heli 98.7 1.1E-07 2.4E-12 95.5 9.8 266 88-369 294-599 (629)
133 TIGR01407 dinG_rel DnaQ family 98.6 8.5E-07 1.8E-11 101.5 15.7 106 87-193 673-813 (850)
134 KOG0341 DEAD-box protein abstr 98.5 5.8E-07 1.3E-11 89.8 11.1 54 88-145 246-310 (610)
135 KOG0330 ATP-dependent RNA heli 98.5 2.9E-07 6.3E-12 92.2 8.7 248 75-340 117-406 (476)
136 CHL00122 secA preprotein trans 98.5 2.8E-06 6.1E-11 94.3 16.7 125 22-153 361-490 (870)
137 KOG0385 Chromatin remodeling c 98.4 1.2E-06 2.6E-11 94.3 11.6 135 72-206 470-613 (971)
138 PF06862 DUF1253: Protein of u 98.4 1.2E-05 2.6E-10 84.1 18.5 181 21-202 216-423 (442)
139 KOG0384 Chromodomain-helicase 98.4 1.3E-06 2.9E-11 98.1 11.5 121 74-194 684-811 (1373)
140 KOG0333 U5 snRNP-like RNA heli 98.4 8.9E-07 1.9E-11 91.7 9.3 55 87-145 321-380 (673)
141 KOG0387 Transcription-coupled 98.4 2.7E-06 5.9E-11 92.0 12.2 118 72-189 529-651 (923)
142 PF03880 DbpA: DbpA RNA bindin 98.4 6.3E-07 1.4E-11 70.8 5.1 61 287-354 1-61 (74)
143 PRK11634 ATP-dependent RNA hel 98.3 5.8E-07 1.3E-11 99.1 4.8 69 88-160 74-154 (629)
144 KOG0338 ATP-dependent RNA heli 98.3 2.1E-06 4.5E-11 88.8 7.9 111 89-210 253-383 (691)
145 KOG0390 DNA repair protein, SN 98.3 5.3E-06 1.2E-10 91.3 11.6 119 72-190 577-701 (776)
146 PRK12902 secA preprotein trans 98.2 8.6E-06 1.9E-10 90.6 11.9 127 22-153 376-505 (939)
147 KOG0391 SNF2 family DNA-depend 98.2 1.1E-05 2.4E-10 90.0 12.3 122 72-193 1259-1386(1958)
148 KOG0392 SNF2 family DNA-depend 98.2 7.1E-06 1.5E-10 92.2 10.8 118 72-189 1309-1447(1549)
149 PTZ00110 helicase; Provisional 98.2 7.5E-07 1.6E-11 97.0 2.9 251 89-356 204-500 (545)
150 PRK11192 ATP-dependent RNA hel 98.1 3.5E-06 7.6E-11 89.3 6.9 264 89-367 74-378 (434)
151 PRK04837 ATP-dependent RNA hel 98.1 7.9E-06 1.7E-10 86.3 8.5 69 89-161 84-163 (423)
152 PRK11776 ATP-dependent RNA hel 98.1 8.7E-06 1.9E-10 87.0 7.9 238 89-351 73-359 (460)
153 PRK08074 bifunctional ATP-depe 98.1 5.7E-05 1.2E-09 87.2 15.1 79 87-165 751-834 (928)
154 KOG0949 Predicted helicase, DE 97.9 8.6E-05 1.9E-09 82.2 11.1 82 114-195 965-1049(1330)
155 COG1199 DinG Rad3-related DNA 97.8 0.00034 7.3E-09 78.2 16.0 94 88-184 479-607 (654)
156 PRK07246 bifunctional ATP-depe 97.8 0.00014 3E-09 82.8 12.7 77 86-165 645-724 (820)
157 COG0553 HepA Superfamily II DN 97.8 9.1E-05 2E-09 85.0 11.3 118 73-190 692-816 (866)
158 KOG0386 Chromatin remodeling c 97.8 0.00012 2.6E-09 81.4 10.9 124 71-194 708-836 (1157)
159 PRK11747 dinG ATP-dependent DN 97.8 0.00033 7.1E-09 78.5 14.7 76 87-165 533-615 (697)
160 KOG0389 SNF2 family DNA-depend 97.8 8.5E-05 1.8E-09 80.7 9.5 122 73-194 761-888 (941)
161 TIGR00348 hsdR type I site-spe 97.8 0.0002 4.4E-09 79.9 12.9 93 88-181 514-634 (667)
162 KOG1123 RNA polymerase II tran 97.8 0.00011 2.3E-09 76.3 9.6 106 73-182 527-635 (776)
163 TIGR02562 cas3_yersinia CRISPR 97.8 0.00018 4E-09 81.4 12.0 89 92-183 760-881 (1110)
164 KOG1002 Nucleotide excision re 97.8 0.00012 2.6E-09 75.7 9.6 121 73-193 620-748 (791)
165 KOG1000 Chromatin remodeling p 97.7 9E-05 2E-09 76.7 8.4 104 86-189 490-596 (689)
166 KOG0334 RNA helicase [RNA proc 97.7 6.5E-05 1.4E-09 84.0 7.6 244 89-352 439-732 (997)
167 COG4096 HsdR Type I site-speci 97.7 0.00013 2.9E-09 80.0 9.7 91 89-181 427-525 (875)
168 COG0653 SecA Preprotein transl 97.7 0.00013 2.7E-09 81.1 9.0 119 75-195 416-546 (822)
169 PF13307 Helicase_C_2: Helicas 97.7 9.6E-05 2.1E-09 67.9 6.9 105 87-193 8-149 (167)
170 KOG0340 ATP-dependent RNA heli 97.6 0.0008 1.7E-08 67.3 12.1 53 89-145 76-133 (442)
171 KOG0345 ATP-dependent RNA heli 97.5 0.00029 6.4E-09 72.6 8.4 243 90-351 81-374 (567)
172 KOG0347 RNA helicase [RNA proc 97.5 0.00022 4.8E-09 74.7 7.1 238 90-341 265-570 (731)
173 KOG0388 SNF2 family DNA-depend 97.5 0.00036 7.9E-09 75.0 8.3 118 72-189 1027-1147(1185)
174 KOG0329 ATP-dependent RNA heli 97.3 0.0014 3E-08 62.8 9.6 68 90-161 112-191 (387)
175 KOG3973 Uncharacterized conser 97.3 0.00091 2E-08 66.1 8.5 11 361-371 315-325 (465)
176 TIGR00604 rad3 DNA repair heli 97.3 0.0069 1.5E-07 68.3 16.3 78 88-166 522-615 (705)
177 TIGR03117 cas_csf4 CRISPR-asso 97.3 0.0019 4.1E-08 71.1 11.3 78 87-166 469-561 (636)
178 PLN00206 DEAD-box ATP-dependen 97.2 0.0058 1.3E-07 66.4 14.1 70 88-161 196-276 (518)
179 TIGR00596 rad1 DNA repair prot 97.2 0.0014 3.1E-08 74.0 9.4 59 142-203 431-526 (814)
180 KOG0342 ATP-dependent RNA heli 97.1 0.0026 5.6E-08 66.2 9.7 107 88-205 154-281 (543)
181 PRK14873 primosome assembly pr 97.0 0.012 2.6E-07 65.4 14.9 73 127-202 462-546 (665)
182 PLN03137 ATP-dependent DNA hel 97.0 0.0094 2E-07 68.9 13.7 60 87-146 499-561 (1195)
183 TIGR00614 recQ_fam ATP-depende 96.9 0.002 4.4E-08 69.1 7.8 60 87-146 50-110 (470)
184 KOG1015 Transcription regulato 96.8 0.0034 7.5E-08 69.7 8.1 118 73-190 1126-1271(1567)
185 KOG0921 Dosage compensation co 96.8 0.0071 1.5E-07 67.0 10.3 9 322-330 1075-1084(1282)
186 PRK10689 transcription-repair 96.7 0.0011 2.3E-08 77.9 3.9 75 86-160 647-727 (1147)
187 COG4889 Predicted helicase [Ge 96.7 0.0011 2.3E-08 73.1 3.1 101 89-189 461-583 (1518)
188 PRK01297 ATP-dependent RNA hel 96.7 0.0041 9E-08 66.7 7.4 70 89-161 163-243 (475)
189 PRK10917 ATP-dependent DNA hel 96.6 0.0069 1.5E-07 67.9 8.8 82 80-161 302-389 (681)
190 KOG0951 RNA helicase BRR2, DEA 96.5 0.06 1.3E-06 62.0 15.5 185 10-202 1279-1502(1674)
191 KOG3973 Uncharacterized conser 96.5 0.0093 2E-07 59.2 7.8 12 196-207 164-175 (465)
192 TIGR03817 DECH_helic helicase/ 96.4 0.0094 2E-07 67.5 8.8 70 87-161 80-163 (742)
193 KOG4439 RNA polymerase II tran 96.3 0.018 4E-07 62.4 9.5 117 73-189 729-851 (901)
194 PRK05580 primosome assembly pr 96.3 0.013 2.8E-07 65.7 8.9 90 72-162 173-265 (679)
195 TIGR00643 recG ATP-dependent D 96.3 0.014 3.1E-07 64.9 8.8 82 80-161 276-363 (630)
196 TIGR00595 priA primosomal prot 96.3 0.017 3.8E-07 62.4 9.1 89 72-161 8-99 (505)
197 PF13871 Helicase_C_4: Helicas 96.1 0.018 3.8E-07 57.0 7.6 79 128-206 52-142 (278)
198 KOG0328 Predicted ATP-dependen 96.0 0.0083 1.8E-07 58.5 4.5 244 87-340 94-369 (400)
199 TIGR00580 mfd transcription-re 96.0 0.021 4.4E-07 65.9 8.5 90 72-161 483-579 (926)
200 KOG0337 ATP-dependent RNA heli 95.9 0.094 2E-06 54.0 11.9 69 89-161 91-170 (529)
201 PF02399 Herpes_ori_bp: Origin 95.7 0.21 4.5E-06 56.0 14.6 102 75-182 269-377 (824)
202 PRK11057 ATP-dependent DNA hel 95.6 0.13 2.8E-06 57.1 12.7 60 87-146 64-124 (607)
203 KOG0326 ATP-dependent RNA heli 95.4 0.095 2.1E-06 52.1 9.5 249 89-351 154-439 (459)
204 KOG0343 RNA Helicase [RNA proc 95.4 0.026 5.7E-07 59.8 5.9 106 89-206 142-267 (758)
205 PTZ00424 helicase 45; Provisio 95.2 0.041 8.8E-07 57.5 6.7 70 88-161 96-176 (401)
206 TIGR01389 recQ ATP-dependent D 95.1 0.28 6.2E-06 54.2 13.4 60 87-146 52-112 (591)
207 PRK14873 primosome assembly pr 95.0 0.067 1.4E-06 59.6 8.0 91 72-163 171-265 (665)
208 KOG4284 DEAD box protein [Tran 95.0 0.092 2E-06 56.7 8.3 69 88-161 93-173 (980)
209 COG0514 RecQ Superfamily II DN 94.8 0.17 3.6E-06 55.2 10.1 213 88-320 57-324 (590)
210 PRK13767 ATP-dependent helicas 94.6 0.85 1.8E-05 52.9 15.9 69 89-161 85-178 (876)
211 COG1110 Reverse gyrase [DNA re 94.4 0.14 2.9E-06 58.3 8.4 60 87-146 124-190 (1187)
212 KOG2340 Uncharacterized conser 94.4 0.12 2.5E-06 54.8 7.3 182 21-202 470-676 (698)
213 smart00492 HELICc3 helicase su 94.1 0.21 4.5E-06 44.5 7.5 47 120-166 30-79 (141)
214 KOG1596 Fibrillarin and relate 94.0 0.35 7.6E-06 46.4 9.1 7 470-476 126-132 (317)
215 PRK14701 reverse gyrase; Provi 93.8 0.13 2.8E-06 62.8 7.3 60 87-146 121-187 (1638)
216 COG1198 PriA Primosomal protei 93.8 0.16 3.5E-06 56.8 7.4 90 70-160 226-318 (730)
217 TIGR01054 rgy reverse gyrase. 93.6 0.13 2.8E-06 61.0 6.8 60 87-146 120-187 (1171)
218 smart00491 HELICc2 helicase su 93.3 0.23 4.9E-06 44.3 6.3 41 125-165 32-79 (142)
219 KOG0348 ATP-dependent RNA heli 93.3 1.1 2.5E-05 47.7 12.1 84 88-176 211-316 (708)
220 KOG0701 dsRNA-specific nucleas 93.0 0.065 1.4E-06 64.0 3.0 94 89-182 293-399 (1606)
221 cd00268 DEADc DEAD-box helicas 91.3 1.3 2.8E-05 41.3 9.2 69 88-160 69-148 (203)
222 KOG0346 RNA helicase [RNA proc 90.9 1.7 3.8E-05 45.3 10.0 59 89-151 94-164 (569)
223 PF12683 DUF3798: Protein of u 90.7 0.92 2E-05 44.4 7.5 156 22-218 4-174 (275)
224 COG1111 MPH1 ERCC4-like helica 90.6 1.9 4.2E-05 45.7 10.2 71 88-163 58-139 (542)
225 PF00270 DEAD: DEAD/DEAH box h 90.5 1.8 3.9E-05 38.7 9.1 68 89-160 45-124 (169)
226 KOG1016 Predicted DNA helicase 90.4 0.74 1.6E-05 50.9 7.2 109 88-196 719-849 (1387)
227 KOG1596 Fibrillarin and relate 90.4 1.3 2.7E-05 42.8 7.9 7 469-475 89-95 (317)
228 COG1200 RecG RecG-like helicas 90.2 0.96 2.1E-05 49.7 7.9 83 79-161 302-390 (677)
229 KOG0344 ATP-dependent RNA heli 89.6 0.14 3.1E-06 54.7 1.0 71 88-161 209-294 (593)
230 PRK09401 reverse gyrase; Revie 89.4 1 2.3E-05 53.6 8.1 73 87-160 122-206 (1176)
231 KOG0327 Translation initiation 89.3 0.28 6.1E-06 50.0 2.9 55 279-335 306-361 (397)
232 COG1201 Lhr Lhr-like helicases 89.3 14 0.0003 42.2 16.4 68 90-161 75-155 (814)
233 PRK13766 Hef nuclease; Provisi 88.8 4.3 9.3E-05 46.4 12.4 70 87-161 57-137 (773)
234 PRK09751 putative ATP-dependen 88.4 1.2 2.5E-05 54.0 7.6 70 88-161 37-130 (1490)
235 KOG1001 Helicase-like transcri 87.1 0.24 5.2E-06 55.2 0.8 118 72-189 521-643 (674)
236 PRK02362 ski2-like helicase; P 86.7 19 0.00041 41.1 15.8 74 81-161 60-143 (737)
237 COG1197 Mfd Transcription-repa 85.9 2.6 5.6E-05 49.2 8.2 88 73-160 627-721 (1139)
238 KOG0116 RasGAP SH3 binding pro 84.5 6.3 0.00014 41.4 9.7 63 301-367 299-367 (419)
239 PF10593 Z1: Z1 domain; Inter 84.4 6.8 0.00015 38.1 9.4 87 111-202 110-201 (239)
240 KOG0351 ATP-dependent DNA heli 83.8 10 0.00022 44.2 11.7 57 89-145 305-364 (941)
241 TIGR02621 cas3_GSU0051 CRISPR- 83.7 2.3 4.9E-05 48.6 6.5 53 89-145 62-143 (844)
242 KOG0350 DEAD-box ATP-dependent 82.6 2.7 5.9E-05 44.6 6.0 72 89-160 216-300 (620)
243 KOG1513 Nuclear helicase MOP-3 82.3 2 4.3E-05 47.9 5.0 54 130-183 850-911 (1300)
244 PHA02653 RNA helicase NPH-II; 80.2 3.6 7.7E-05 46.2 6.4 68 88-161 222-297 (675)
245 smart00487 DEXDc DEAD-like hel 79.9 3.3 7.2E-05 37.3 5.2 46 5-50 145-190 (201)
246 PF05918 API5: Apoptosis inhib 79.6 0.58 1.3E-05 50.7 0.0 10 197-206 264-273 (556)
247 TIGR00963 secA preprotein tran 79.1 7.5 0.00016 43.8 8.4 61 79-146 89-154 (745)
248 PRK12898 secA preprotein trans 77.8 7.3 0.00016 43.4 7.8 54 86-145 142-200 (656)
249 COG4371 Predicted membrane pro 76.3 5.6 0.00012 38.3 5.5 10 339-348 9-18 (334)
250 PRK13104 secA preprotein trans 74.6 9.6 0.00021 43.8 7.7 62 78-146 114-180 (896)
251 PRK12899 secA preprotein trans 73.9 10 0.00022 43.8 7.7 52 88-145 135-191 (970)
252 cd00046 DEXDc DEAD-like helica 71.2 20 0.00043 29.9 7.5 71 72-146 11-88 (144)
253 PRK00254 ski2-like helicase; P 71.0 9.9 0.00021 43.2 7.0 67 87-160 67-143 (720)
254 smart00493 TOPRIM topoisomeras 66.8 12 0.00025 28.8 4.6 59 91-150 2-60 (76)
255 cd01524 RHOD_Pyr_redox Member 66.2 14 0.00031 29.4 5.2 41 82-122 45-86 (90)
256 PRK09200 preprotein translocas 66.1 19 0.00041 41.2 7.7 60 79-145 111-176 (790)
257 PRK11664 ATP-dependent RNA hel 65.7 22 0.00048 40.9 8.4 81 73-163 32-124 (812)
258 COG2519 GCD14 tRNA(1-methylade 63.6 34 0.00074 33.5 7.9 40 72-111 172-211 (256)
259 PRK01172 ski2-like helicase; P 63.6 14 0.00031 41.5 6.3 72 82-160 59-140 (674)
260 cd01523 RHOD_Lact_B Member of 62.2 13 0.00029 30.2 4.4 42 81-122 54-96 (100)
261 TIGR01659 sex-lethal sex-letha 62.0 2E+02 0.0042 29.7 13.9 59 287-354 194-257 (346)
262 COG1205 Distinct helicase fami 61.1 46 0.001 38.6 9.8 101 87-191 114-238 (851)
263 KOG1257 NADP+-dependent malic 60.8 2.5E+02 0.0054 30.5 15.2 216 91-332 115-354 (582)
264 smart00487 DEXDc DEAD-like hel 60.8 1.1E+02 0.0023 27.1 10.7 85 72-160 35-134 (201)
265 TIGR01970 DEAH_box_HrpB ATP-de 60.3 19 0.00042 41.4 6.6 67 87-163 44-121 (819)
266 KOG0332 ATP-dependent RNA heli 59.9 15 0.00032 37.9 4.9 22 89-110 161-182 (477)
267 KOG0389 SNF2 family DNA-depend 59.8 23 0.0005 39.9 6.7 66 81-148 441-510 (941)
268 TIGR00631 uvrb excinuclease AB 57.8 72 0.0016 35.9 10.4 107 69-177 37-175 (655)
269 COG1512 Beta-propeller domains 57.6 14 0.00029 36.7 4.2 18 165-182 76-93 (271)
270 COG4098 comFA Superfamily II D 55.4 2.1E+02 0.0045 29.6 12.0 141 23-190 91-239 (441)
271 COG4907 Predicted membrane pro 54.8 10 0.00022 39.8 2.8 43 304-346 488-530 (595)
272 PRK12904 preprotein translocas 53.8 43 0.00094 38.5 7.9 61 78-145 113-178 (830)
273 KOG0105 Alternative splicing f 53.2 47 0.001 30.8 6.5 45 302-351 18-64 (241)
274 KOG1133 Helicase of the DEAD s 53.2 3.3E+02 0.0071 30.8 13.9 76 88-166 629-720 (821)
275 KOG0298 DEAD box-containing he 50.0 56 0.0012 38.9 8.0 99 87-189 1220-1319(1394)
276 PF14617 CMS1: U3-containing 9 49.4 73 0.0016 31.2 7.7 69 89-160 127-206 (252)
277 TIGR01648 hnRNP-R-Q heterogene 49.1 3.5E+02 0.0075 30.0 13.7 70 287-367 234-307 (578)
278 COG1204 Superfamily II helicas 49.0 30 0.00065 39.6 5.7 73 81-160 68-151 (766)
279 KOG0116 RasGAP SH3 binding pro 47.4 29 0.00063 36.6 4.9 13 139-152 122-134 (419)
280 PRK05728 DNA polymerase III su 46.6 53 0.0012 29.1 5.9 81 70-163 10-93 (142)
281 COG4907 Predicted membrane pro 45.9 18 0.00039 38.1 3.0 15 19-33 116-130 (595)
282 cd01444 GlpE_ST GlpE sulfurtra 45.8 48 0.001 26.3 5.1 43 79-121 47-91 (96)
283 PRK05298 excinuclease ABC subu 45.2 1.5E+02 0.0033 33.2 10.6 107 69-177 40-178 (652)
284 PRK06958 single-stranded DNA-b 44.7 71 0.0015 29.7 6.5 6 287-292 29-34 (182)
285 smart00450 RHOD Rhodanese Homo 43.5 30 0.00066 27.2 3.6 37 86-122 54-92 (100)
286 COG0610 Type I site-specific r 43.3 1.3E+02 0.0028 35.6 9.8 82 126-208 580-666 (962)
287 cd01535 4RHOD_Repeat_4 Member 42.8 52 0.0011 29.2 5.2 46 77-122 38-85 (145)
288 PF04364 DNA_pol3_chi: DNA pol 42.1 70 0.0015 28.1 5.9 75 75-164 15-95 (137)
289 COG4359 Uncharacterized conser 42.0 1.3E+02 0.0028 28.2 7.5 86 3-96 75-166 (220)
290 COG1512 Beta-propeller domains 41.3 32 0.0007 34.1 3.9 9 137-145 100-108 (271)
291 KOG0352 ATP-dependent DNA heli 41.1 39 0.00085 35.6 4.5 82 64-146 38-122 (641)
292 COG0052 RpsB Ribosomal protein 41.1 34 0.00073 33.3 3.9 38 73-110 48-85 (252)
293 PF13245 AAA_19: Part of AAA d 40.5 51 0.0011 25.8 4.2 40 69-108 18-62 (76)
294 PTZ00240 60S ribosomal protein 38.8 2E+02 0.0043 29.4 9.2 134 9-181 11-154 (323)
295 TIGR03714 secA2 accessory Sec 38.6 89 0.0019 35.7 7.3 61 78-145 102-172 (762)
296 TIGR00696 wecB_tagA_cpsF bacte 35.9 1.5E+02 0.0032 27.3 7.2 62 75-136 34-99 (177)
297 PHA02558 uvsW UvsW helicase; P 35.6 1.6E+02 0.0035 31.9 8.6 79 71-160 139-227 (501)
298 cd01533 4RHOD_Repeat_2 Member 34.7 86 0.0019 25.8 5.1 36 87-122 65-103 (109)
299 PRK06646 DNA polymerase III su 34.3 1.2E+02 0.0026 27.4 6.2 40 70-109 10-50 (154)
300 KOG0385 Chromatin remodeling c 34.2 1.2E+02 0.0026 34.4 7.2 58 86-145 215-275 (971)
301 cd01529 4RHOD_Repeats Member o 33.7 61 0.0013 26.0 3.9 37 86-122 54-92 (96)
302 cd01526 RHOD_ThiF Member of th 33.3 46 0.001 28.2 3.3 37 86-122 70-109 (122)
303 COG3587 Restriction endonuclea 32.6 93 0.002 35.7 6.1 70 137-206 483-565 (985)
304 cd01528 RHOD_2 Member of the R 32.1 1.1E+02 0.0023 24.8 5.2 37 87-123 57-95 (101)
305 PRK00162 glpE thiosulfate sulf 32.0 1E+02 0.0023 25.2 5.2 45 78-122 48-94 (108)
306 PF01751 Toprim: Toprim domain 31.6 26 0.00057 28.7 1.4 61 91-151 1-74 (100)
307 COG4152 ABC-type uncharacteriz 31.6 5.2E+02 0.011 25.6 10.7 81 74-161 165-248 (300)
308 PF11496 HDA2-3: Class II hist 31.1 2E+02 0.0042 29.0 7.7 104 72-175 95-226 (297)
309 cd01520 RHOD_YbbB Member of th 31.1 85 0.0018 26.9 4.6 38 85-122 83-122 (128)
310 KOG0383 Predicted helicase [Ge 30.5 45 0.00097 37.5 3.3 76 74-149 616-695 (696)
311 cd01521 RHOD_PspE2 Member of t 30.5 66 0.0014 26.6 3.7 39 84-122 60-101 (110)
312 cd01527 RHOD_YgaP Member of th 30.0 68 0.0015 25.8 3.6 37 86-122 52-90 (99)
313 PF03808 Glyco_tran_WecB: Glyc 29.4 1.9E+02 0.0041 26.3 6.8 66 75-140 34-104 (172)
314 PF11019 DUF2608: Protein of u 29.3 3.6E+02 0.0077 26.3 9.1 105 8-114 84-205 (252)
315 cd01522 RHOD_1 Member of the R 29.2 1.1E+02 0.0025 25.6 5.0 37 86-122 62-100 (117)
316 PRK05320 rhodanese superfamily 29.1 1.9E+02 0.004 28.4 7.1 37 87-123 174-212 (257)
317 TIGR02329 propionate_PrpR prop 28.9 5.2E+02 0.011 28.3 11.1 136 6-145 15-153 (526)
318 PF07652 Flavi_DEAD: Flaviviru 28.8 98 0.0021 27.7 4.5 35 76-110 20-55 (148)
319 cd01518 RHOD_YceA Member of th 28.7 63 0.0014 26.2 3.2 37 86-122 59-97 (101)
320 cd01534 4RHOD_Repeat_3 Member 28.6 77 0.0017 25.4 3.7 35 88-122 56-91 (95)
321 PF02445 NadA: Quinolinate syn 28.6 2.8E+02 0.006 27.9 8.1 194 6-236 57-272 (296)
322 cd01449 TST_Repeat_2 Thiosulfa 28.1 1.1E+02 0.0023 25.4 4.7 45 77-121 65-113 (118)
323 cd06533 Glyco_transf_WecG_TagA 27.9 2.3E+02 0.005 25.7 7.1 63 75-137 32-99 (171)
324 COG4029 Uncharacterized protei 27.9 4E+02 0.0087 23.1 8.2 45 299-352 14-58 (142)
325 PLN03134 glycine-rich RNA-bind 27.5 4.3E+02 0.0093 23.3 10.8 60 286-354 34-98 (144)
326 PRK13107 preprotein translocas 27.4 1.7E+02 0.0038 34.0 7.2 62 77-145 113-179 (908)
327 cd00158 RHOD Rhodanese Homolog 27.0 97 0.0021 23.7 3.9 36 86-121 48-85 (89)
328 cd01448 TST_Repeat_1 Thiosulfa 26.9 1.2E+02 0.0027 25.3 4.9 37 86-122 77-116 (122)
329 COG3973 Superfamily I DNA and 26.5 5.3E+02 0.012 28.8 10.2 121 24-164 592-716 (747)
330 KOG0952 DNA/RNA helicase MER3/ 26.4 1.6E+02 0.0034 34.8 6.6 83 88-177 164-267 (1230)
331 PRK15483 type III restriction- 26.1 2.7E+02 0.0059 32.8 8.6 70 137-206 501-580 (986)
332 cd01532 4RHOD_Repeat_1 Member 26.0 90 0.002 24.9 3.6 36 87-122 49-88 (92)
333 PF12689 Acid_PPase: Acid Phos 26.0 2.4E+02 0.0053 25.8 6.8 121 5-135 45-168 (169)
334 PRK13103 secA preprotein trans 25.2 2.6E+02 0.0056 32.7 8.1 64 76-146 112-180 (913)
335 KOG3293 Small nuclear ribonucl 24.9 1.1E+02 0.0025 26.1 4.0 17 336-352 67-83 (134)
336 cd01447 Polysulfide_ST Polysul 24.8 77 0.0017 25.4 3.1 36 86-121 59-96 (103)
337 cd06578 HemD Uroporphyrinogen- 24.3 2.4E+02 0.0052 26.2 6.9 35 76-110 109-143 (239)
338 cd01519 RHOD_HSP67B2 Member of 24.2 82 0.0018 25.5 3.1 36 87-122 65-102 (106)
339 cd00188 TOPRIM Topoisomerase-p 23.7 1.7E+02 0.0036 21.6 4.7 60 91-151 2-61 (83)
340 PF12614 RRF_GI: Ribosome recy 23.3 2.6E+02 0.0056 24.4 5.9 32 167-214 8-39 (128)
341 PLN02160 thiosulfate sulfurtra 23.2 1.4E+02 0.0031 26.0 4.6 37 86-122 79-117 (136)
342 cd01531 Acr2p Eukaryotic arsen 23.1 2.3E+02 0.0049 23.4 5.7 36 87-122 61-107 (113)
343 cd01525 RHOD_Kc Member of the 22.8 98 0.0021 25.0 3.3 35 88-122 65-101 (105)
344 PRK06739 pyruvate kinase; Vali 22.5 3.2E+02 0.0069 28.2 7.6 32 123-154 250-281 (352)
345 PF15320 RAM: mRNA cap methyla 22.2 2.9E+02 0.0062 22.1 5.6 12 362-373 25-36 (81)
346 PF04094 DUF390: Protein of un 22.0 5.4E+02 0.012 29.1 9.3 16 304-319 13-28 (828)
347 KOG1132 Helicase of the DEAD s 21.4 6.2E+02 0.013 29.5 9.9 78 88-166 561-656 (945)
348 PRK10287 thiosulfate:cyanide s 21.0 2.3E+02 0.0051 23.5 5.2 34 88-121 60-94 (104)
349 cd01027 TOPRIM_RNase_M5_like T 20.9 1.9E+02 0.0041 22.9 4.5 53 91-147 3-55 (81)
350 PF00581 Rhodanese: Rhodanese- 20.9 1.4E+02 0.0031 24.0 4.0 37 86-122 65-108 (113)
351 KOG0107 Alternative splicing f 20.5 7E+02 0.015 23.2 14.1 72 285-366 9-86 (195)
352 PRK06827 phosphoribosylpyropho 20.3 2.1E+02 0.0046 29.9 5.8 59 88-147 264-329 (382)
353 KOG3293 Small nuclear ribonucl 20.3 3.6E+02 0.0078 23.2 6.0 7 337-343 53-59 (134)
No 1
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=2.8e-52 Score=454.47 Aligned_cols=344 Identities=29% Similarity=0.479 Sum_probs=298.5
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHH
Q 011052 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ 80 (494)
||+|||.++++.|+..+|..+|+++||||||+.+..+++.|+.+|..|.+.. .......+.+.++.+....|.+.|..
T Consensus 161 ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~--~~~~~~~i~q~~~~v~~~~k~~~L~~ 238 (629)
T PRK11634 161 MLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQS--SVTTRPDISQSYWTVWGMRKNEALVR 238 (629)
T ss_pred HhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccC--ccccCCceEEEEEEechhhHHHHHHH
Confidence 7899999999999999999999999999999999999999999998887653 23345667788887777788888888
Q ss_pred HHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEE
Q 011052 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (494)
Q Consensus 81 ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~V 159 (494)
++... ...++||||+|+..|+.+++.|.. ++.+..+||+|++.+|++++++|++|+++|||||+++++|||+|+|++|
T Consensus 239 ~L~~~-~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~V 317 (629)
T PRK11634 239 FLEAE-DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLV 317 (629)
T ss_pred HHHhc-CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEE
Confidence 88765 457999999999999999999986 7899999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceecCCCCHHHHHHHHHHHHHHHHccC-Cc
Q 011052 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGV-HP 238 (494)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~p~~~~i~~~~~~~~~~~l~~~-~~ 238 (494)
||||+|.++++|+||+|||||+|+.|.+++|+.+.|...++.|++.++.+++++.+|..+++.+.....+...+... ..
T Consensus 318 I~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 397 (629)
T PRK11634 318 VNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLES 397 (629)
T ss_pred EEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhCCCcceecCCcHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999888888877776543 33
Q ss_pred cchhhhhHHHHHHHhh-----cCHHHHHHHHHHHcCCCCC----C-------C---Ccc-----------------c--c
Q 011052 239 ESVEFFTPTAQRLIEE-----KGTDALAAALAQLSGFSRP----P-------S---SRS-----------------L--I 280 (494)
Q Consensus 239 ~~~~~f~~~a~~l~~~-----~~~~~l~aal~~~~g~~~~----~-------~---~rs-----------------l--~ 280 (494)
+.++.|.+.++++.++ .+++.++++|+.+.--..+ . + .+. . .
T Consensus 398 ~~~~~~~~~~~~l~~~~~~~~~~~~~~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (629)
T PRK11634 398 SDLDQYRALLAKIQPTAEGEELDLETLAAALLKMAQGERPLILPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPR 477 (629)
T ss_pred hhHHHHHHHHHHHHhhhccccCCHHHHHHHHHHHHcCCCccccccccccccccccccccccccccccccccccccccccc
Confidence 4567778888888754 6789999999988522111 0 0 000 0 0
Q ss_pred c---CCCCceEEEEecCCccccCccchhHHHHHhhhhcCcCccccccEEEeecCCcceeEEecCHHHHHHHHhhcCC
Q 011052 281 N---HEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIP 354 (494)
Q Consensus 281 ~---~~~~~~t~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~ig~i~~~~~~~~~gs~~d~~~~~~~~~~~~~~~ 354 (494)
. ...+|++++++.++ ++++.|++|+++|++..++...+||+|+|++++ ||||+|++.++++++.+..
T Consensus 478 ~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~~----s~v~~~~~~~~~~~~~~~~ 547 (629)
T PRK11634 478 RERRDVGDMQLYRIEVGR---DDGVEVRHIVGAIANEGDISSRYIGNIKLFASH----STIELPKGMPGEVLQHFTR 547 (629)
T ss_pred cccccCCCCEEEEEeccc---ccCCCHHHHHHHHHhhcCCChhhCCcEEEeCCc----eEEEcChhhHHHHHHHhcc
Confidence 0 12269999999998 899999999999999999999999999999999 6999999999999987654
No 2
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.9e-44 Score=368.44 Aligned_cols=206 Identities=45% Similarity=0.725 Sum_probs=192.7
Q ss_pred CCCCChHHHHHHHHHhC-CCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHH
Q 011052 1 MLAVGFEEDVELILENL-PPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILS 79 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~l-p~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~ 79 (494)
||||||+++|+.|+.++ ++.+|++++|||+|.+++.++..||++|..|++..........++.|....+++..|...|.
T Consensus 251 MldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~ 330 (519)
T KOG0331|consen 251 MLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLG 330 (519)
T ss_pred hhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHH
Confidence 99999999999999999 56679999999999999999999999999999876556677888999999999999999999
Q ss_pred HHHHHhc--cCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcc
Q 011052 80 DLITVYA--KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNV 156 (494)
Q Consensus 80 ~ll~~~~--~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v 156 (494)
.+|..+. +..|+||||+|++.|++|+..|.+ .+.+.+|||+.+|.+|+.+|+.|++|++.||||||||+||||||+|
T Consensus 331 ~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV 410 (519)
T KOG0331|consen 331 KLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDV 410 (519)
T ss_pred HHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccc
Confidence 9999885 567999999999999999999997 6999999999999999999999999999999999999999999999
Q ss_pred cEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHh
Q 011052 157 DLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDV 206 (494)
Q Consensus 157 ~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~ 206 (494)
++|||||+|.++++|+||+|||||+|++|.+++|++..+......+.+.+
T Consensus 411 ~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l 460 (519)
T KOG0331|consen 411 DLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVL 460 (519)
T ss_pred cEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988777776554
No 3
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.6e-41 Score=358.54 Aligned_cols=217 Identities=43% Similarity=0.733 Sum_probs=198.0
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCccc-HHHHHH
Q 011052 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATS-KRTILS 79 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~-k~~~L~ 79 (494)
||||||.++|+.|+..+|+++|+++||||||..+..+++.|+++|..|.+...........++|+++.+...+ |.++|.
T Consensus 186 mLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~ 265 (513)
T COG0513 186 MLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLL 265 (513)
T ss_pred hhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999888763334447788999999998766 999999
Q ss_pred HHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccE
Q 011052 80 DLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL 158 (494)
Q Consensus 80 ~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~ 158 (494)
.+++... ..++||||+|+..|+.++..|.. ++.+..|||+|+|.+|.++++.|++|+++||||||+++||||||+|++
T Consensus 266 ~ll~~~~-~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~ 344 (513)
T COG0513 266 KLLKDED-EGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSH 344 (513)
T ss_pred HHHhcCC-CCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccce
Confidence 9998764 35899999999999999999986 799999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCChhhHHHHhcccCCCCCCceEEEecChh-hHHHHHHHHHHhCCCce-ecCCCCH
Q 011052 159 IIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSS-QRRTVRSLERDVGCKFE-FVSPPVV 218 (494)
Q Consensus 159 VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~-e~~~l~~le~~~~~~~~-~~~~p~~ 218 (494)
|||||+|.+++.|+||+|||||+|++|.+++|+.+. |...+..+++.+...+. ...+|..
T Consensus 345 VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~~~~~~~~~~~ 406 (513)
T COG0513 345 VINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERKLPSAVLLPLD 406 (513)
T ss_pred eEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhccccccccCCcc
Confidence 999999999999999999999999999999999986 89999999999876655 3444443
No 4
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.3e-41 Score=317.30 Aligned_cols=213 Identities=35% Similarity=0.603 Sum_probs=198.7
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCccc-HHHHHH
Q 011052 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATS-KRTILS 79 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~-k~~~L~ 79 (494)
||+.||.+++-.|++.+|+.+|++++|||+|.+|.+...+|+.+|+.|-+. ..+.+.+.|+++|+.+..++ |.+.|+
T Consensus 181 mL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvk--rdeltlEgIKqf~v~ve~EewKfdtLc 258 (400)
T KOG0328|consen 181 MLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVK--RDELTLEGIKQFFVAVEKEEWKFDTLC 258 (400)
T ss_pred HHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEe--cCCCchhhhhhheeeechhhhhHhHHH
Confidence 789999999999999999999999999999999999999999999988553 45566778999999988776 999999
Q ss_pred HHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccE
Q 011052 80 DLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL 158 (494)
Q Consensus 80 ~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~ 158 (494)
++.+.+. -.+++|||||+..++.+.+.++. .+.+..+||+|+|++|+++++.||+++.+|||+||+.+||+|+|+|++
T Consensus 259 dLYd~Lt-ItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVsl 337 (400)
T KOG0328|consen 259 DLYDTLT-ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSL 337 (400)
T ss_pred HHhhhhe-hheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEE
Confidence 9988764 47999999999999999999986 789999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceecCCC
Q 011052 159 IIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216 (494)
Q Consensus 159 VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~p 216 (494)
|||||+|.+.+.|+||+||.||.|++|.++-|+...|.+.++.+|+++...+.+++..
T Consensus 338 viNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp~n 395 (400)
T KOG0328|consen 338 VINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMPMN 395 (400)
T ss_pred EEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhcccccch
Confidence 9999999999999999999999999999999999999999999999999888777654
No 5
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=2.4e-40 Score=333.10 Aligned_cols=270 Identities=34% Similarity=0.495 Sum_probs=221.8
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcC-CCcEEEeccccccccccceEEEEEEcCcccHHHHHH
Q 011052 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILS 79 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~-~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~ 79 (494)
+|||||++||+.|+..+|+.+|++|||||+|++|+++++..|+ +|+.|++++.....+.+.+++-|+.++...+..+|.
T Consensus 242 lLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ll~ 321 (543)
T KOG0342|consen 242 LLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFSLLY 321 (543)
T ss_pred hhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHHHHH
Confidence 5899999999999999999999999999999999999998887 589999998888888999999999888888888888
Q ss_pred HHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccE
Q 011052 80 DLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL 158 (494)
Q Consensus 80 ~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~ 158 (494)
.+|+.+....++||||+|...+..+++.|.. .++|..+||+++|..|..+..+|++.+.-|||||||++||+|+|+|++
T Consensus 322 ~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~ 401 (543)
T KOG0342|consen 322 TFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDW 401 (543)
T ss_pred HHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceE
Confidence 9998886669999999999999999999986 789999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceecCCCCH-HHHHHHHHHHHHHHHccCC
Q 011052 159 IIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVV-EDVLESSAEQVVATLNGVH 237 (494)
Q Consensus 159 VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~p~~-~~i~~~~~~~~~~~l~~~~ 237 (494)
||+||+|.++++||||+|||||.|++|.+++++.|+|..++++|+ ..++++.+.|.. .+.++...+.++..-...+
T Consensus 402 VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK---~lpl~~~e~~~~~~~~v~~~~~~li~~~y~~~ 478 (543)
T KOG0342|consen 402 VVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLK---KLPLEEFEFPPLKPEDVQSQLEKLISKNYSLK 478 (543)
T ss_pred EEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHh---hCCCcccCCCCCCHHHHHHHHHHHHHHHhhHH
Confidence 999999999999999999999999999999999999999999998 445554444433 3344444444444222222
Q ss_pred ccchhhhhHHHHHH-------HhhcCHHHHHHHHHHHcCCCCCC
Q 011052 238 PESVEFFTPTAQRL-------IEEKGTDALAAALAQLSGFSRPP 274 (494)
Q Consensus 238 ~~~~~~f~~~a~~l-------~~~~~~~~l~aal~~~~g~~~~~ 274 (494)
....+.|..+...+ ......-.|+ ++++.+|++.||
T Consensus 479 ~aak~ay~syl~~y~s~slk~~~~~~~l~La-~~~~s~gf~~pp 521 (543)
T KOG0342|consen 479 EAAKEAYKSYLGAYNSHSLKDIFNVNLLELA-AVAKSFGFSVPP 521 (543)
T ss_pred HHHHHHHHhhhhhccchhhhcccccchhhHH-HHHHHcCCCCCc
Confidence 22222222221111 1112233456 888999998876
No 6
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.1e-40 Score=321.59 Aligned_cols=211 Identities=36% Similarity=0.600 Sum_probs=198.9
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHH
Q 011052 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ 80 (494)
+|||-|.+++..||+.+|.++|++|||||||+.+.++....+++|+.|.+. ....+.++++++|+.++...|...|..
T Consensus 216 lLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s--~ky~tv~~lkQ~ylfv~~k~K~~yLV~ 293 (476)
T KOG0330|consen 216 LLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVS--SKYQTVDHLKQTYLFVPGKDKDTYLVY 293 (476)
T ss_pred hhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEecc--chhcchHHhhhheEeccccccchhHHH
Confidence 589999999999999999999999999999999999999999999988764 456678889999999999999999999
Q ss_pred HHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEE
Q 011052 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (494)
Q Consensus 81 ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~V 159 (494)
+++.. .+..+||||+|...++.++-.|.. ++.+..|||+|+|..|...++.|+++.++||||||+++||+|+|.|++|
T Consensus 294 ll~e~-~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~V 372 (476)
T KOG0330|consen 294 LLNEL-AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVV 372 (476)
T ss_pred HHHhh-cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEE
Confidence 99876 568999999999999999999997 8999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceecC
Q 011052 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 214 (494)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~ 214 (494)
||||+|.+..+||||+|||+|+|++|.+|.|++..|.+.+.+||..++.+.....
T Consensus 373 VNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~~~~ 427 (476)
T KOG0330|consen 373 VNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLPEYK 427 (476)
T ss_pred EecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCCccC
Confidence 9999999999999999999999999999999999999999999999998875543
No 7
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=1.3e-39 Score=329.07 Aligned_cols=199 Identities=41% Similarity=0.646 Sum_probs=182.4
Q ss_pred CCCCChHHHHHHHHHhCCC---C----------------------CcEEEEeecCChHHHHHHHHHcCCCcEEEeccccc
Q 011052 1 MLAVGFEEDVELILENLPP---K----------------------RQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQD 55 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~lp~---~----------------------~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~ 55 (494)
|+||||++|+..||.++|. . +|+++||||||+.+..+++.||.+|+.+.+- ..
T Consensus 408 miDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~vtig--~~ 485 (673)
T KOG0333|consen 408 MIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIG--SA 485 (673)
T ss_pred hhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeEEEec--cC
Confidence 8999999999999999983 1 7999999999999999999999999998764 34
Q ss_pred cccccceEEEEEEcCcccHHHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHcccc
Q 011052 56 EKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFR 134 (494)
Q Consensus 56 ~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr 134 (494)
.+..+.+++..+.+...+|...|..+|..+ ...++|||+|+++.|+.|++.|.+ ++.|+.|||+-+|+||+.+|+.|+
T Consensus 486 gk~~~rveQ~v~m~~ed~k~kkL~eil~~~-~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr 564 (673)
T KOG0333|consen 486 GKPTPRVEQKVEMVSEDEKRKKLIEILESN-FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFR 564 (673)
T ss_pred CCCccchheEEEEecchHHHHHHHHHHHhC-CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHH
Confidence 455677888888888888999999999876 568999999999999999999997 899999999999999999999999
Q ss_pred CCCeeEEEechhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHH
Q 011052 135 QGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 202 (494)
Q Consensus 135 ~g~~~iLVaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~l 202 (494)
.+..+||||||+|+||||||+|.+|||||++.++++|+||+|||||+|+.|++++|+++.+......|
T Consensus 565 ~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ydL 632 (673)
T KOG0333|consen 565 EGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYDL 632 (673)
T ss_pred hcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999885544333
No 8
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=1.7e-37 Score=329.94 Aligned_cols=285 Identities=31% Similarity=0.507 Sum_probs=245.4
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHH
Q 011052 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ 80 (494)
|++|||..+++.|+..+|+.+|+++||||+|+.+..++..++.+|..+.+.... ....++++++.++...|.+.|..
T Consensus 159 ~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~---~~~~i~~~~~~~~~~~k~~~l~~ 235 (460)
T PRK11776 159 MLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH---DLPAIEQRFYEVSPDERLPALQR 235 (460)
T ss_pred HhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC---CCCCeeEEEEEeCcHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999888765322 24557888888888889999999
Q ss_pred HHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEE
Q 011052 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (494)
Q Consensus 81 ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~V 159 (494)
++... ...++||||+|++.|+.+++.|.. ++.+..+||+|++.+|+.+++.|++|+++|||||+++++|||+|++++|
T Consensus 236 ll~~~-~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~V 314 (460)
T PRK11776 236 LLLHH-QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAV 314 (460)
T ss_pred HHHhc-CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeE
Confidence 88765 457899999999999999999986 7899999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceecCCCCHHHHHHHHHHHHHHHHccCCcc
Q 011052 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239 (494)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~p~~~~i~~~~~~~~~~~l~~~~~~ 239 (494)
||||+|.+.++|+||+|||||+|+.|.+++|+.+.|...++.+++.++.++++...|......
T Consensus 315 I~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~~~~~~~l~~~~~~~----------------- 377 (460)
T PRK11776 315 INYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGRKLNWEPLPSLSPLS----------------- 377 (460)
T ss_pred EEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCCCCceecCCchhhcc-----------------
Confidence 999999999999999999999999999999999999999999999999888776665422100
Q ss_pred chhhhhHHHHHHHhhcCHHHHHHHHHHHcCCCCCCCCcccccCCCCceEEEEecCCccccCccchhHHHHHhhhhcCcCc
Q 011052 240 SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAA 319 (494)
Q Consensus 240 ~~~~f~~~a~~l~~~~~~~~l~aal~~~~g~~~~~~~rsl~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~ 319 (494)
..+ ....+.++.+..++ +.++.+.++.+.+........
T Consensus 378 -------------------------------~~~--------~~~~~~~l~i~~~~---~~~~~~~~~~~~~~~~~~~~~ 415 (460)
T PRK11776 378 -------------------------------GVP--------LLPEMVTLCIDGGK---KDKLRPGDILGALTGDAGLDG 415 (460)
T ss_pred -------------------------------ccc--------CCCCeEEEEEeccc---ccCCCccchHHHhhcccCCCh
Confidence 000 01236777777665 456678889999888877788
Q ss_pred cccccEEEeecCCcceeEEecCHHHHHHHHhhc
Q 011052 320 DEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQ 352 (494)
Q Consensus 320 ~~ig~i~~~~~~~~~gs~~d~~~~~~~~~~~~~ 352 (494)
+++|.+.+.+.+ ++++++++.++..+...
T Consensus 416 ~~~g~~~~~~~~----~~~~~~~~~~~~~~~~~ 444 (460)
T PRK11776 416 AQIGKINVTDFH----AYVAVERAVAKKALKKL 444 (460)
T ss_pred hhcCCccccccc----ceeecchhhHHHHHHHh
Confidence 889999988877 69999999888888653
No 9
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-37 Score=306.13 Aligned_cols=204 Identities=37% Similarity=0.610 Sum_probs=186.7
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHH
Q 011052 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ 80 (494)
||||||+.+|.+||-.+.+++|++|.|||.|+.+.+++..|+++|..+- ++.-.-.....+++..+.....+|.+++..
T Consensus 379 MLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~-vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~~ 457 (629)
T KOG0336|consen 379 MLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVY-VGSLDLVAVKSVKQNIIVTTDSEKLEIVQF 457 (629)
T ss_pred hhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEE-ecccceeeeeeeeeeEEecccHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998764 333333345667888888888899999999
Q ss_pred HHHHhccCCcEEEEcCChhhHHHHHHHHh-ccCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEE
Q 011052 81 LITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (494)
Q Consensus 81 ll~~~~~~~~~IVF~~t~~~~~~l~~~L~-~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~V 159 (494)
++..+.+..++||||..+..|+.|...|. +++.+..|||+-.|.+|+..++.|++|+++||||||+++||||+|+|+||
T Consensus 458 f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV 537 (629)
T KOG0336|consen 458 FVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHV 537 (629)
T ss_pred HHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhccee
Confidence 99999899999999999999999988887 58999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHH
Q 011052 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERD 205 (494)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~ 205 (494)
+|||+|.+++.|+||+|||||+|++|++++|++..|......|-+.
T Consensus 538 ~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~I 583 (629)
T KOG0336|consen 538 YNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQI 583 (629)
T ss_pred eccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999998877666443
No 10
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=4.9e-37 Score=311.80 Aligned_cols=212 Identities=33% Similarity=0.504 Sum_probs=194.7
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHH
Q 011052 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ 80 (494)
||||||.+.++.|+..+|+++|++|||||....++.+++..+++|..|.+.......++.+++++|+.++..+|+++|..
T Consensus 227 ~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L~s 306 (758)
T KOG0343|consen 227 MLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDMLWS 306 (758)
T ss_pred HHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHHHHH
Confidence 79999999999999999999999999999999999999999999999988755567788999999999999999999999
Q ss_pred HHHHhccCCcEEEEcCChhhHHHHHHHHhc---cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCccc
Q 011052 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (494)
Q Consensus 81 ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~---~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~ 157 (494)
+|..+ ...+.|||+.|.++|..+++.+.+ ++++.+|||.|+|..|..++++|-....-||+|||+++||||+|.|+
T Consensus 307 FI~sh-lk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVd 385 (758)
T KOG0343|consen 307 FIKSH-LKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVD 385 (758)
T ss_pred HHHhc-cccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccc
Confidence 99887 458999999999999999998874 78999999999999999999999998899999999999999999999
Q ss_pred EEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhh-HHHHHHHHHHhCCCceecC
Q 011052 158 LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ-RRTVRSLERDVGCKFEFVS 214 (494)
Q Consensus 158 ~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e-~~~l~~le~~~~~~~~~~~ 214 (494)
+||++|+|.++++||||+|||+|....|.++++++|.| ..++..|++.. ++++.+.
T Consensus 386 wViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~k~-I~i~~i~ 442 (758)
T KOG0343|consen 386 WVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQKKK-IPIKEIK 442 (758)
T ss_pred eEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHHcC-CCHHhhc
Confidence 99999999999999999999999999999999999998 45666776653 5555433
No 11
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.3e-37 Score=308.53 Aligned_cols=219 Identities=34% Similarity=0.511 Sum_probs=197.0
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHH
Q 011052 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ 80 (494)
+|||||+.+++.||+.+|+++++-|||||+.+++.++++..++||+.|.+.......++..+..+|+.|++..|...|.+
T Consensus 169 LldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~~~lv~ 248 (567)
T KOG0345|consen 169 LLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKLSQLVH 248 (567)
T ss_pred HhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999988655554578889999999999999999999
Q ss_pred HHHHhccCCcEEEEcCChhhHHHHHHHHhc---cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCccc
Q 011052 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (494)
Q Consensus 81 ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~---~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~ 157 (494)
+|..+ ...++|||.+|...++..+..+.. ...+..+||.|.+.+|.++++.|++..-.+|+||||++||||||+|+
T Consensus 249 ~L~~~-~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD 327 (567)
T KOG0345|consen 249 LLNNN-KDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGID 327 (567)
T ss_pred HHhcc-ccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCce
Confidence 99885 568999999999999999988874 57899999999999999999999998888999999999999999999
Q ss_pred EEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceecCCCCHHH
Q 011052 158 LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVED 220 (494)
Q Consensus 158 ~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~p~~~~ 220 (494)
+|||||+|.++..|+||+|||+|+|+.|.+++|+.+.|..++..+.-.-...++....+....
T Consensus 328 ~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i~~~v~le~~~~e~~~~ 390 (567)
T KOG0345|consen 328 LVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFLRIKGKVELERIDTEKASL 390 (567)
T ss_pred EEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHHHHHhcCccchhhhcccccch
Confidence 999999999999999999999999999999999999998888877655445555555544443
No 12
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-36 Score=304.71 Aligned_cols=202 Identities=35% Similarity=0.576 Sum_probs=182.6
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCc---ccHHHH
Q 011052 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA---TSKRTI 77 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~---~~k~~~ 77 (494)
||+.||.++|.+|++.+|+++|++||||||..+|+.++.-.|++|+.|-+. ++..++..+.+.|+...+ .++..+
T Consensus 339 MLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd--~~~~~a~~LtQEFiRIR~~re~dRea~ 416 (691)
T KOG0338|consen 339 MLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVD--PNKDTAPKLTQEFIRIRPKREGDREAM 416 (691)
T ss_pred HHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeC--CccccchhhhHHHheeccccccccHHH
Confidence 899999999999999999999999999999999999999999999998764 344556666666665443 357778
Q ss_pred HHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcc
Q 011052 78 LSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNV 156 (494)
Q Consensus 78 L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v 156 (494)
|..++.... ..++|||+.|++.|..+.-.|-- ++.+.-|||.|+|.||...+++|++.+++||||||+|+|||||+.|
T Consensus 417 l~~l~~rtf-~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV 495 (691)
T KOG0338|consen 417 LASLITRTF-QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGV 495 (691)
T ss_pred HHHHHHHhc-ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccce
Confidence 888887663 58999999999999999888764 7899999999999999999999999999999999999999999999
Q ss_pred cEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHH
Q 011052 157 DLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERD 205 (494)
Q Consensus 157 ~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~ 205 (494)
..||||++|.+.+.|+||+|||+|+|+.|.+++|+...|++.++.+-+.
T Consensus 496 ~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~ 544 (691)
T KOG0338|consen 496 QTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKS 544 (691)
T ss_pred eEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999998766
No 13
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.2e-36 Score=286.11 Aligned_cols=210 Identities=30% Similarity=0.540 Sum_probs=198.6
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHH
Q 011052 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ 80 (494)
||+.-|.+-|++++..+|+++|++|||||+|-.++.+..++|++|..|++- ++.+...+.+||..+.+.+|...|..
T Consensus 239 lLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM---~eLtl~GvtQyYafV~e~qKvhCLnt 315 (459)
T KOG0326|consen 239 LLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLM---EELTLKGVTQYYAFVEERQKVHCLNT 315 (459)
T ss_pred hhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehh---hhhhhcchhhheeeechhhhhhhHHH
Confidence 688899999999999999999999999999999999999999999999885 45667889999999999999999999
Q ss_pred HHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEE
Q 011052 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (494)
Q Consensus 81 ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~V 159 (494)
++..+. -.++|||||+...++.+|..+.+ ++.|..+|+.|.|++|.+++..|++|.|+.|||||.+.||||++.|++|
T Consensus 316 LfskLq-INQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvV 394 (459)
T KOG0326|consen 316 LFSKLQ-INQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVV 394 (459)
T ss_pred HHHHhc-ccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEE
Confidence 887773 47899999999999999999987 8999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceecC
Q 011052 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 214 (494)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~ 214 (494)
||||+|.+.++|+||+||.||.|..|.+|.+++-.|+..+..||+.++.+++.++
T Consensus 395 INFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~pip 449 (459)
T KOG0326|consen 395 INFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKPIP 449 (459)
T ss_pred EecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccccccCC
Confidence 9999999999999999999999999999999999999999999999999887655
No 14
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.5e-35 Score=282.88 Aligned_cols=216 Identities=31% Similarity=0.507 Sum_probs=191.6
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHH
Q 011052 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ 80 (494)
||+-.|-++++.|.+.+|+.+|+++|||||.+.+..+..-..+.+....+.......+.+.+.+.|+.++...|...|.+
T Consensus 165 vL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkdaYLv~ 244 (442)
T KOG0340|consen 165 VLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDAYLVH 244 (442)
T ss_pred hhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhHHHHHH
Confidence 68889999999999999999999999999999888765433333212222222445667788999999999999999999
Q ss_pred HHHHhcc--CCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCccc
Q 011052 81 LITVYAK--GGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (494)
Q Consensus 81 ll~~~~~--~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~ 157 (494)
+|..+.. ...++||++|..+|+.++..|+. .+.+..+|+.|+|.+|...+.+||.+..+||||||||+||+|||.|+
T Consensus 245 ~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~ 324 (442)
T KOG0340|consen 245 LLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVE 324 (442)
T ss_pred HHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCcee
Confidence 9988855 67899999999999999999997 79999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceecCCC
Q 011052 158 LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216 (494)
Q Consensus 158 ~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~p 216 (494)
+|||||+|.++.+|+||+|||+|+|+.|.++.++++.|.+.++.||...+.++.+....
T Consensus 325 LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl~e~~~~ 383 (442)
T KOG0340|consen 325 LVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKLTEYNKV 383 (442)
T ss_pred EEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhccccccccc
Confidence 99999999999999999999999999999999999999999999999999998765443
No 15
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=2.9e-36 Score=294.91 Aligned_cols=191 Identities=32% Similarity=0.573 Sum_probs=162.7
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHH
Q 011052 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ 80 (494)
|+||||++||..|+..+...+|++|||||||..|+.+++..+-.|++|++-- .. ...-++.+..-.+..+.|.-.|.+
T Consensus 338 miDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGR-AG-AAsldViQevEyVkqEaKiVylLe 415 (610)
T KOG0341|consen 338 MIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGR-AG-AASLDVIQEVEYVKQEAKIVYLLE 415 (610)
T ss_pred HhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEeccc-cc-ccchhHHHHHHHHHhhhhhhhHHH
Confidence 8999999999999999999999999999999999999999999999998632 11 111222221112333445444444
Q ss_pred HHHHhccCCcEEEEcCChhhHHHHHHHHh-ccCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEE
Q 011052 81 LITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (494)
Q Consensus 81 ll~~~~~~~~~IVF~~t~~~~~~l~~~L~-~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~V 159 (494)
.|+. ...++||||..+.+++.++++|- +++.++.+||+-.|++|...++.|+.|+.+||||||+++.|+|+|++.||
T Consensus 416 CLQK--T~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHV 493 (610)
T KOG0341|consen 416 CLQK--TSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHV 493 (610)
T ss_pred Hhcc--CCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhh
Confidence 4443 34699999999999999999986 68999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhhHHHHhcccCCCCCCceEEEecChhh
Q 011052 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 195 (494)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e 195 (494)
||||+|.+++.|+||+|||||.|++|.+.+|++...
T Consensus 494 INyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~ 529 (610)
T KOG0341|consen 494 INYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQ 529 (610)
T ss_pred ccCCChHHHHHHHHHhcccCCCCCcceeeeeecccc
Confidence 999999999999999999999999999999998764
No 16
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=7.4e-34 Score=306.75 Aligned_cols=206 Identities=34% Similarity=0.579 Sum_probs=182.8
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcC-CCcEEEeccccccccccceEEEEEEcCcccHHHHHH
Q 011052 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILS 79 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~-~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~ 79 (494)
||++||.+++..|+..+++++|+++||||+|.++..+++.++. +|..+.+... ......++++.+..+....|...|.
T Consensus 289 mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~-~l~~~~~i~q~~~~~~~~~k~~~L~ 367 (545)
T PTZ00110 289 MLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSL-DLTACHNIKQEVFVVEEHEKRGKLK 367 (545)
T ss_pred hhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCC-ccccCCCeeEEEEEEechhHHHHHH
Confidence 7899999999999999999999999999999999999999886 4666655322 2233456777777777778888888
Q ss_pred HHHHHhc-cCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCccc
Q 011052 80 DLITVYA-KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (494)
Q Consensus 80 ~ll~~~~-~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~ 157 (494)
.++.... ...++||||+|++.|+.++..|.. ++.+..+||+|++.+|+.++++|++|+++|||||+++++|||+|+|+
T Consensus 368 ~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~ 447 (545)
T PTZ00110 368 MLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVK 447 (545)
T ss_pred HHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCC
Confidence 8887764 567999999999999999999985 78999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhC
Q 011052 158 LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVG 207 (494)
Q Consensus 158 ~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~ 207 (494)
+|||||+|.++++|+||+|||||+|+.|.+++|+++.+...++.|.+.+.
T Consensus 448 ~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~l~ 497 (545)
T PTZ00110 448 YVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKVLR 497 (545)
T ss_pred EEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998887777766554
No 17
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=1.3e-33 Score=299.54 Aligned_cols=210 Identities=39% Similarity=0.611 Sum_probs=188.7
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHH
Q 011052 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ 80 (494)
|+++||..++..|+..++..+|+++||||+++++..++.+++.+|..+.+.. .......+.+++..+....|.++|..
T Consensus 161 ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~--~~~~~~~i~~~~~~~~~~~k~~~l~~ 238 (456)
T PRK10590 161 MLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVAR--RNTASEQVTQHVHFVDKKRKRELLSQ 238 (456)
T ss_pred HhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEec--ccccccceeEEEEEcCHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999998877643 22334567777777777778888887
Q ss_pred HHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEE
Q 011052 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (494)
Q Consensus 81 ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~V 159 (494)
++... ...++||||+|++.|+.+++.|.. ++.+..+||+|++.+|.+++++|++|+++|||||+++++|||+|+|++|
T Consensus 239 l~~~~-~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~V 317 (456)
T PRK10590 239 MIGKG-NWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHV 317 (456)
T ss_pred HHHcC-CCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEE
Confidence 77653 457999999999999999999986 7899999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceec
Q 011052 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFV 213 (494)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~ 213 (494)
|||++|.++++|+||+|||||+|..|.+++|+...|...++.+++.+..++++.
T Consensus 318 I~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~~~~~ 371 (456)
T PRK10590 318 VNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRI 371 (456)
T ss_pred EEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCCCccc
Confidence 999999999999999999999999999999999999999999999887766443
No 18
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.4e-33 Score=296.84 Aligned_cols=210 Identities=34% Similarity=0.559 Sum_probs=187.6
Q ss_pred CCCCChHHHHHHHHHhCCC--CCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHH
Q 011052 1 MLAVGFEEDVELILENLPP--KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTIL 78 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~lp~--~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L 78 (494)
|+++||..+++.|++.+|. .+|+++||||+|..+..++..++.+|..+.+.. .......+.+.++.+....|...|
T Consensus 169 l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~--~~~~~~~i~~~~~~~~~~~k~~~l 246 (423)
T PRK04837 169 MFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEP--EQKTGHRIKEELFYPSNEEKMRLL 246 (423)
T ss_pred HhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcC--CCcCCCceeEEEEeCCHHHHHHHH
Confidence 6889999999999999984 578899999999999999999999998887643 233445667766666667788888
Q ss_pred HHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCccc
Q 011052 79 SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (494)
Q Consensus 79 ~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~ 157 (494)
..++... ...++||||+|+..|+.+++.|.. ++.+..+||+|++.+|.+++++|++|+++||||||++++|||+|+|+
T Consensus 247 ~~ll~~~-~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~ 325 (423)
T PRK04837 247 QTLIEEE-WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVT 325 (423)
T ss_pred HHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccC
Confidence 8888764 457999999999999999999985 78999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceec
Q 011052 158 LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFV 213 (494)
Q Consensus 158 ~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~ 213 (494)
+|||||+|.+.+.|+||+|||||.|+.|.+++|+.+.|...+..+++.++..++..
T Consensus 326 ~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~~~~~ 381 (423)
T PRK04837 326 HVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHSIPVS 381 (423)
T ss_pred EEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCCCCCc
Confidence 99999999999999999999999999999999999999999999999888776543
No 19
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.8e-34 Score=279.80 Aligned_cols=210 Identities=34% Similarity=0.605 Sum_probs=197.5
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHH
Q 011052 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ 80 (494)
||.-||+++|..|++++|++.|++++|||+|.|+..+.++|+.+|..|.+.. ...+...++++|+.+....|...|.+
T Consensus 181 mLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk--~~ltl~gikq~~i~v~k~~k~~~l~d 258 (397)
T KOG0327|consen 181 MLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKK--DELTLEGIKQFYINVEKEEKLDTLCD 258 (397)
T ss_pred hhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecc--hhhhhhheeeeeeeccccccccHHHH
Confidence 7899999999999999999999999999999999999999999999987653 34567889999999988889999999
Q ss_pred HHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEE
Q 011052 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (494)
Q Consensus 81 ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~V 159 (494)
+.+ .-.+++|||||++.+..+...|.. .+.+.++|++|.+.+|+.++..|+.|..+|||+|+.++||+|+.++..|
T Consensus 259 l~~---~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slv 335 (397)
T KOG0327|consen 259 LYR---RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLV 335 (397)
T ss_pred HHH---hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhccee
Confidence 887 347999999999999999999975 7899999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceecCC
Q 011052 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSP 215 (494)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~ 215 (494)
|||++|...+.|+||+||+||.|++|.++.+++..+...++.+|++++..+++++.
T Consensus 336 inydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~ 391 (397)
T KOG0327|consen 336 VNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEELPS 391 (397)
T ss_pred eeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCcceeccc
Confidence 99999999999999999999999999999999999999999999999999887754
No 20
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.7e-34 Score=276.94 Aligned_cols=214 Identities=31% Similarity=0.497 Sum_probs=190.7
Q ss_pred CChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCc-ccHHHHHHHHH
Q 011052 4 VGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA-TSKRTILSDLI 82 (494)
Q Consensus 4 ~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~L~~ll 82 (494)
.||.++-..|...+|++.|+++||||....+..++.+.+.++..+.+. .+.....+|+++|+.|.. .+|.++|..+.
T Consensus 248 qG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk--~eel~L~~IkQlyv~C~~~~~K~~~l~~ly 325 (477)
T KOG0332|consen 248 QGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILK--REELALDNIKQLYVLCACRDDKYQALVNLY 325 (477)
T ss_pred ccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeee--hhhccccchhhheeeccchhhHHHHHHHHH
Confidence 589999999999999999999999999999999999999999888764 345556788888887765 57999988876
Q ss_pred HHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEe
Q 011052 83 TVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH 161 (494)
Q Consensus 83 ~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~ 161 (494)
... .-+++||||.|++.|..++..|.. +..|..|||+|.-.+|..++++||.|..+|||+|+|++||||++.|++|||
T Consensus 326 g~~-tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvN 404 (477)
T KOG0332|consen 326 GLL-TIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVN 404 (477)
T ss_pred hhh-hhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEe
Confidence 655 347999999999999999999986 899999999999999999999999999999999999999999999999999
Q ss_pred cCCCC------ChhhHHHHhcccCCCCCCceEEEecChhh-HHHHHHHHHHhCCCceecCCCCHHH
Q 011052 162 YELPN------DPETFVHRSGRTGRAGKEGTAILMFTSSQ-RRTVRSLERDVGCKFEFVSPPVVED 220 (494)
Q Consensus 162 ~~~P~------~~~~y~qr~GR~gR~G~~g~~i~l~~~~e-~~~l~~le~~~~~~~~~~~~p~~~~ 220 (494)
||+|. |.++|+||+|||||.|+.|.++-|+...+ ...+..|+++.+.++....+...+|
T Consensus 405 ydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~~~~d~~E 470 (477)
T KOG0332|consen 405 YDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKIKRLDPDDLDE 470 (477)
T ss_pred cCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhcceecCCccHHH
Confidence 99994 78999999999999999999999987654 5678899999998888776644444
No 21
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.9e-33 Score=303.38 Aligned_cols=208 Identities=34% Similarity=0.547 Sum_probs=185.8
Q ss_pred CCCCChHHHHHHHHHhCCC--CCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHH
Q 011052 1 MLAVGFEEDVELILENLPP--KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTIL 78 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~lp~--~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L 78 (494)
|+++||..+|+.|++.+|. ++|+++||||++..+..++..++.+|..+.+.. .......+.+.++.+....|...|
T Consensus 171 lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~--~~~~~~~i~q~~~~~~~~~k~~~L 248 (572)
T PRK04537 171 MFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVET--ETITAARVRQRIYFPADEEKQTLL 248 (572)
T ss_pred HhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEecc--ccccccceeEEEEecCHHHHHHHH
Confidence 6889999999999999987 789999999999999999999999887665432 223445677777777777788887
Q ss_pred HHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCccc
Q 011052 79 SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (494)
Q Consensus 79 ~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~ 157 (494)
..++... ...++||||+|++.|+.|++.|.+ ++.+..+||+|++.+|++++++|++|+++||||||++++|||+|+|+
T Consensus 249 ~~ll~~~-~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~ 327 (572)
T PRK04537 249 LGLLSRS-EGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVK 327 (572)
T ss_pred HHHHhcc-cCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCC
Confidence 7777653 467999999999999999999986 78999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCce
Q 011052 158 LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFE 211 (494)
Q Consensus 158 ~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~ 211 (494)
+|||||+|.++++|+||+|||||.|++|.+++|+.+.+...+..+++.+..+++
T Consensus 328 ~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~~~~ 381 (572)
T PRK04537 328 YVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQKIP 381 (572)
T ss_pred EEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999999899999888776654
No 22
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.8e-34 Score=290.27 Aligned_cols=201 Identities=41% Similarity=0.660 Sum_probs=176.3
Q ss_pred CCC-CChHHHHHHHHHhCCC----CCcEEEEeecCChHHHHHHHHHcCC-CcEEEeccccccccccceEEEEEEcCcccH
Q 011052 1 MLA-VGFEEDVELILENLPP----KRQSMLFSATMPSWVKKLSRKYLDN-PLNIDLVGNQDEKLAEGIKLYAISTTATSK 74 (494)
Q Consensus 1 mL~-~GF~~~i~~Il~~lp~----~~q~ll~SATlp~~i~~l~~~~l~~-p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k 74 (494)
||| |||.++|.+|+.++.. ++|++|||||.|..+..++..|+.+ ...+.+. .......++.+..+.+...+|
T Consensus 238 MlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~--rvg~~~~ni~q~i~~V~~~~k 315 (482)
T KOG0335|consen 238 MLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVG--RVGSTSENITQKILFVNEMEK 315 (482)
T ss_pred hhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEe--eeccccccceeEeeeecchhh
Confidence 899 9999999999998753 7999999999999999999999986 4444432 234456788888888888888
Q ss_pred HHHHHHHHHHhc---cCC-----cEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEech
Q 011052 75 RTILSDLITVYA---KGG-----KTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (494)
Q Consensus 75 ~~~L~~ll~~~~---~~~-----~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~ 145 (494)
...|.+++.... ... +++|||+|++.|.+++..|.. ++++..+||+.+|.+|+++++.|++|++.+||||+
T Consensus 316 r~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~ 395 (482)
T KOG0335|consen 316 RSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATN 395 (482)
T ss_pred HHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcceEEEeh
Confidence 888888876543 233 899999999999999999986 89999999999999999999999999999999999
Q ss_pred hhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHH
Q 011052 146 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 203 (494)
Q Consensus 146 ~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le 203 (494)
+++||||+|+|+||||||+|.+.++|+||+|||||+|..|.++.|+........+.|-
T Consensus 396 VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~ 453 (482)
T KOG0335|consen 396 VAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALV 453 (482)
T ss_pred hhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHH
Confidence 9999999999999999999999999999999999999999999999966655444443
No 23
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=9.6e-32 Score=283.93 Aligned_cols=208 Identities=31% Similarity=0.540 Sum_probs=184.3
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeecCCh-HHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcC-cccHHHHH
Q 011052 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPS-WVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTT-ATSKRTIL 78 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~lp~~~q~ll~SATlp~-~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~-~~~k~~~L 78 (494)
||++||..+++.|...++...|+++||||++. .+..++..++.+|..+.+... ......+.++++.+. ...|.++|
T Consensus 159 ~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~i~~~~~~~~~~~~k~~~l 236 (434)
T PRK11192 159 MLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPS--RRERKKIHQWYYRADDLEHKTALL 236 (434)
T ss_pred HhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCC--cccccCceEEEEEeCCHHHHHHHH
Confidence 78999999999999999999999999999984 688899999999988876532 233455667666554 35688888
Q ss_pred HHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCccc
Q 011052 79 SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (494)
Q Consensus 79 ~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~ 157 (494)
..++... ...++||||+|++.|+.+++.|.. ++.+..+||+|++.+|..++++|++|+++|||||+++++|||+|+|+
T Consensus 237 ~~l~~~~-~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~ 315 (434)
T PRK11192 237 CHLLKQP-EVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVS 315 (434)
T ss_pred HHHHhcC-CCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCC
Confidence 8887653 457999999999999999999986 78999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCce
Q 011052 158 LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFE 211 (494)
Q Consensus 158 ~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~ 211 (494)
+|||||+|.+.+.|+||+|||||+|..|.+++|++..|...+..+++++..++.
T Consensus 316 ~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~~~~ 369 (434)
T PRK11192 316 HVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIEEPLK 369 (434)
T ss_pred EEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999999999999999999988766553
No 24
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=1e-31 Score=288.91 Aligned_cols=204 Identities=28% Similarity=0.458 Sum_probs=179.4
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHH
Q 011052 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ 80 (494)
|+++||.+++..|+..++ ++|+++||||+|+.+..++..++.++..|.+.. .......+++..+.+....|...|.+
T Consensus 282 ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~--~~~~~~~v~q~~~~~~~~~k~~~l~~ 358 (518)
T PLN00206 282 MLERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLAKDIILISIGN--PNRPNKAVKQLAIWVETKQKKQKLFD 358 (518)
T ss_pred HhhcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCC--CCCCCcceeEEEEeccchhHHHHHHH
Confidence 789999999999999995 689999999999999999999999888777542 23345567777777777777777777
Q ss_pred HHHHhcc-CCcEEEEcCChhhHHHHHHHHhc--cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCccc
Q 011052 81 LITVYAK-GGKTIVFTQTKRDADEVSLALTS--IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (494)
Q Consensus 81 ll~~~~~-~~~~IVF~~t~~~~~~l~~~L~~--~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~ 157 (494)
++..... ..++||||+|+..|+.+++.|.. ++.+..+||+|++.+|..++++|++|+++|||||++++||||+|+|+
T Consensus 359 ~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~ 438 (518)
T PLN00206 359 ILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVR 438 (518)
T ss_pred HHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCC
Confidence 7765432 35899999999999999999974 68899999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhC
Q 011052 158 LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVG 207 (494)
Q Consensus 158 ~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~ 207 (494)
+|||||+|.++++|+||+|||||.|..|.+++|+++.+...+..+.+.+.
T Consensus 439 ~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~l~ 488 (518)
T PLN00206 439 QVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVALLK 488 (518)
T ss_pred EEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988877777766544
No 25
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.97 E-value=2.2e-31 Score=264.71 Aligned_cols=205 Identities=26% Similarity=0.481 Sum_probs=188.1
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHH
Q 011052 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ 80 (494)
||..||++|+..|.+.+|+..|.+|||||+.+.|..+-+.+|++|+.+.+.+. +...+..+.||++.|..++|..++..
T Consensus 182 llsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~-el~~~dqL~Qy~v~cse~DKflllya 260 (569)
T KOG0346|consen 182 LLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEG-ELPNPDQLTQYQVKCSEEDKFLLLYA 260 (569)
T ss_pred hhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccc-cCCCcccceEEEEEeccchhHHHHHH
Confidence 67899999999999999999999999999999999999999999999887643 33356889999999999999999998
Q ss_pred HHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEech--------------
Q 011052 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-------------- 145 (494)
Q Consensus 81 ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~-------------- 145 (494)
+++..--.+++|||+||.+.|..+.-.|+. +++.++|+|.||.+-|..++++|..|-++|+||||
T Consensus 261 llKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kg 340 (569)
T KOG0346|consen 261 LLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKG 340 (569)
T ss_pred HHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccc
Confidence 887766679999999999999999999998 79999999999999999999999999999999999
Q ss_pred ---------------------hhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHH
Q 011052 146 ---------------------VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLER 204 (494)
Q Consensus 146 ---------------------~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~ 204 (494)
-++||||+.+|..|||||+|.++..||||+|||+|++++|.++.|+.+.+..-...||.
T Consensus 341 k~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~~le~ 420 (569)
T KOG0346|consen 341 KSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKESLES 420 (569)
T ss_pred cccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhhhHHHH
Confidence 35899999999999999999999999999999999999999999999999875555555
Q ss_pred Hh
Q 011052 205 DV 206 (494)
Q Consensus 205 ~~ 206 (494)
..
T Consensus 421 ~~ 422 (569)
T KOG0346|consen 421 IL 422 (569)
T ss_pred HH
Confidence 44
No 26
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.97 E-value=7.8e-31 Score=279.93 Aligned_cols=208 Identities=34% Similarity=0.582 Sum_probs=185.1
Q ss_pred CCCCChHHHHHHHHHhCCC--CCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHH
Q 011052 1 MLAVGFEEDVELILENLPP--KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTIL 78 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~lp~--~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L 78 (494)
|++++|..++..|++.++. ++|+++||||++..+..+++.++.+|..+.+... ......+.+.++.+...+|..+|
T Consensus 249 l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~~~~k~~~l 326 (475)
T PRK01297 249 MLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPE--NVASDTVEQHVYAVAGSDKYKLL 326 (475)
T ss_pred HHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccC--cCCCCcccEEEEEecchhHHHHH
Confidence 4688999999999999975 5799999999999999999999999988766432 23344566666666667888888
Q ss_pred HHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCccc
Q 011052 79 SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (494)
Q Consensus 79 ~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~ 157 (494)
..++... ...++||||++++.|+.+++.|.+ ++.+..+||++++.+|.++++.|++|+++|||||+++++|||+|+|+
T Consensus 327 ~~ll~~~-~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~ 405 (475)
T PRK01297 327 YNLVTQN-PWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGIS 405 (475)
T ss_pred HHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCC
Confidence 8887653 457999999999999999999986 78899999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCce
Q 011052 158 LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFE 211 (494)
Q Consensus 158 ~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~ 211 (494)
+||+|++|.++++|+||+||+||.|+.|.+++|+.+.|...+..+++.++.+++
T Consensus 406 ~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~~ 459 (475)
T PRK01297 406 HVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKIS 459 (475)
T ss_pred EEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCCc
Confidence 999999999999999999999999999999999999999999999999987764
No 27
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=2.6e-31 Score=267.73 Aligned_cols=200 Identities=35% Similarity=0.569 Sum_probs=176.8
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEE-EEcCcccHHHHHH
Q 011052 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYA-ISTTATSKRTILS 79 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~-~~~~~~~k~~~L~ 79 (494)
|.+|||+.++..|..++.+++|+|+||||++..|..+++.+|.+|+.+.... .......|.+.. ++.....|+..|.
T Consensus 382 mfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~--vgean~dITQ~V~V~~s~~~Kl~wl~ 459 (731)
T KOG0339|consen 382 MFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGE--VGEANEDITQTVSVCPSEEKKLNWLL 459 (731)
T ss_pred hhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEee--hhccccchhheeeeccCcHHHHHHHH
Confidence 8899999999999999999999999999999999999999999998875432 223345555544 4445567888776
Q ss_pred HHHHHhccCCcEEEEcCChhhHHHHHHHHh-ccCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccE
Q 011052 80 DLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL 158 (494)
Q Consensus 80 ~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~-~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~ 158 (494)
.-|......+++|||+..+..+++|+..|. +++.+..+||+|.|.+|.++|.+|+++.+.||||||+++||+|||++..
T Consensus 460 ~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikT 539 (731)
T KOG0339|consen 460 RHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKT 539 (731)
T ss_pred HHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccce
Confidence 666666667899999999999999999998 5899999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHH
Q 011052 159 IIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 202 (494)
Q Consensus 159 VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~l 202 (494)
|||||+-.+++.|.||+||+||+|..|++++++++.|....-.|
T Consensus 540 VvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~L 583 (731)
T KOG0339|consen 540 VVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHL 583 (731)
T ss_pred eecccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHH
Confidence 99999999999999999999999999999999999997654444
No 28
>PTZ00424 helicase 45; Provisional
Probab=99.97 E-value=5.9e-30 Score=267.42 Aligned_cols=212 Identities=33% Similarity=0.593 Sum_probs=183.9
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCc-ccHHHHHH
Q 011052 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA-TSKRTILS 79 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~L~ 79 (494)
|++.+|...+.++++.++++.|++++|||+|+++..+...++.+|..+.+.. .......+.++++.+.. ..+...+.
T Consensus 182 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~ 259 (401)
T PTZ00424 182 MLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKK--DELTLEGIRQFYVAVEKEEWKFDTLC 259 (401)
T ss_pred HHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCC--CCcccCCceEEEEecChHHHHHHHHH
Confidence 3567899999999999999999999999999999999999999887765432 22234556666666554 33556666
Q ss_pred HHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccE
Q 011052 80 DLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL 158 (494)
Q Consensus 80 ~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~ 158 (494)
.++... ...++||||+|++.|+.+++.|.. .+.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|++++
T Consensus 260 ~~~~~~-~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~ 338 (401)
T PTZ00424 260 DLYETL-TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSL 338 (401)
T ss_pred HHHHhc-CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCE
Confidence 666543 457899999999999999999986 688999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceecCC
Q 011052 159 IIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSP 215 (494)
Q Consensus 159 VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~ 215 (494)
||+|++|.+...|+||+||+||.|+.|.|++|+++.+...++.+++.+...++..++
T Consensus 339 VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~~~~~~~ 395 (401)
T PTZ00424 339 VINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQIEEMPM 395 (401)
T ss_pred EEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCcccccCc
Confidence 999999999999999999999999999999999999999999999999888776544
No 29
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=1.1e-30 Score=264.94 Aligned_cols=207 Identities=30% Similarity=0.481 Sum_probs=174.7
Q ss_pred CCCCChHHHHHHHHHhC-------------CCCCcEEEEeecCChHHHHHHHHHcCCCcEEEecccc-------------
Q 011052 1 MLAVGFEEDVELILENL-------------PPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQ------------- 54 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~l-------------p~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~------------- 54 (494)
+||+||.+||+.|+..+ |+..|.+|+||||.+.|.+++...|+||+.|.+....
T Consensus 299 lleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~ev 378 (708)
T KOG0348|consen 299 LLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQEV 378 (708)
T ss_pred HHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhhhhhc
Confidence 58999999999999876 3357999999999999999999999999998721100
Q ss_pred ----------ccccccceEEEEEEcCcccHHHHHHHHHHHh---ccCCcEEEEcCChhhHHHHHHHHhcc----------
Q 011052 55 ----------DEKLAEGIKLYAISTTATSKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTSI---------- 111 (494)
Q Consensus 55 ----------~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~---~~~~~~IVF~~t~~~~~~l~~~L~~~---------- 111 (494)
.-.+++.+.+.|..++..-++-.|..+|... .+..++|||+.+.+.++.=++.+...
T Consensus 379 ~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~ 458 (708)
T KOG0348|consen 379 DDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSG 458 (708)
T ss_pred CCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccC
Confidence 0123455677788888776666666665443 24569999999999999888877521
Q ss_pred -------------CceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEecCCCCChhhHHHHhccc
Q 011052 112 -------------IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178 (494)
Q Consensus 112 -------------~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~ 178 (494)
.++.-|||+|+|++|..+++.|+...-.||+||||++||||+|+|++||+||+|.++++|+||+|||
T Consensus 459 ~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRT 538 (708)
T KOG0348|consen 459 APDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRT 538 (708)
T ss_pred CcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhh
Confidence 2467899999999999999999998888999999999999999999999999999999999999999
Q ss_pred CCCCCCceEEEecChhhHHHHHHHHHHhC
Q 011052 179 GRAGKEGTAILMFTSSQRRTVRSLERDVG 207 (494)
Q Consensus 179 gR~G~~g~~i~l~~~~e~~~l~~le~~~~ 207 (494)
+|+|..|.+++|+.|.|..++..++.+..
T Consensus 539 ARaG~kG~alLfL~P~Eaey~~~l~~~~~ 567 (708)
T KOG0348|consen 539 ARAGEKGEALLFLLPSEAEYVNYLKKHHI 567 (708)
T ss_pred hhccCCCceEEEecccHHHHHHHHHhhcc
Confidence 99999999999999999999999887643
No 30
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.97 E-value=6.3e-30 Score=278.08 Aligned_cols=204 Identities=36% Similarity=0.597 Sum_probs=189.1
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcC-cccHHHHHH
Q 011052 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTT-ATSKRTILS 79 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~-~~~k~~~L~ 79 (494)
|+||||.+++..|++.+++.+|+++||||+|..+..++.+.++.|+.|.+- ....+...+++.+..++ ...|...|.
T Consensus 527 mfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~--~~svV~k~V~q~v~V~~~e~eKf~kL~ 604 (997)
T KOG0334|consen 527 MFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVG--GRSVVCKEVTQVVRVCAIENEKFLKLL 604 (997)
T ss_pred hheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEc--cceeEeccceEEEEEecCchHHHHHHH
Confidence 789999999999999999999999999999999999999999988886553 34455677777777777 788999999
Q ss_pred HHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccE
Q 011052 80 DLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL 158 (494)
Q Consensus 80 ~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~ 158 (494)
.+|..+..+.++||||...+.|+.+...|.+ ++.|..|||+.+|.+|..+++.|+++.+.+||||++++||+|++++.+
T Consensus 605 eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~L 684 (997)
T KOG0334|consen 605 ELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELIL 684 (997)
T ss_pred HHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceE
Confidence 9999888889999999999999999999987 789999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHh
Q 011052 159 IIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDV 206 (494)
Q Consensus 159 VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~ 206 (494)
|||||+|...+.|+||+|||||+|++|.|++|+++.+..+.-.|.+.+
T Consensus 685 vvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al 732 (997)
T KOG0334|consen 685 VVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKAL 732 (997)
T ss_pred EEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHH
Confidence 999999999999999999999999999999999998888888888877
No 31
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.96 E-value=8.6e-31 Score=266.45 Aligned_cols=223 Identities=33% Similarity=0.519 Sum_probs=179.5
Q ss_pred CCCCChHHHHHHHHHhCC-----CCCcEEEEeecCChH---------------------HHHHHHH--HcCCCcEEEecc
Q 011052 1 MLAVGFEEDVELILENLP-----PKRQSMLFSATMPSW---------------------VKKLSRK--YLDNPLNIDLVG 52 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~lp-----~~~q~ll~SATlp~~---------------------i~~l~~~--~l~~p~~i~~~~ 52 (494)
|++-|+-+++..||..+. ..+|+++||||+.-. |+.++++ +..+|.+|++..
T Consensus 352 mvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~kpkiiD~t~ 431 (731)
T KOG0347|consen 352 MVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIGFRGKPKIIDLTP 431 (731)
T ss_pred HhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhCccCCCeeEecCc
Confidence 788999999999999886 468999999998421 2223332 233567777652
Q ss_pred ccccccccceEEEEEEcCcccHHHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHc
Q 011052 53 NQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLN 131 (494)
Q Consensus 53 ~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~ 131 (494)
...+...+..-.+.|+..+|.-.|..+|..| ++++|||||+.+.+..|+-.|.. .+....||+.|.|.+|.+.|+
T Consensus 432 --q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ry--PGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLE 507 (731)
T KOG0347|consen 432 --QSATASTLTESLIECPPLEKDLYLYYFLTRY--PGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLE 507 (731)
T ss_pred --chhHHHHHHHHhhcCCccccceeEEEEEeec--CCceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHH
Confidence 3334444444455566666655555555555 58999999999999999999987 789999999999999999999
Q ss_pred cccCCCeeEEEechhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCce
Q 011052 132 GFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFE 211 (494)
Q Consensus 132 ~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~ 211 (494)
+|++....||||||||+||||||.|+|||||..|.+.+.|+||+|||+|++..|.+++|+.|.|...+++|.+.+..+.+
T Consensus 508 kF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~~~~KL~ktL~k~~d 587 (731)
T KOG0347|consen 508 KFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEVGPLKKLCKTLKKKED 587 (731)
T ss_pred HHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHHhHHHHHHHHHHhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888876655
Q ss_pred ecCCCCHHHHHHHHHH
Q 011052 212 FVSPPVVEDVLESSAE 227 (494)
Q Consensus 212 ~~~~p~~~~i~~~~~~ 227 (494)
.-..|-.+.++....+
T Consensus 588 lpifPv~~~~m~~lke 603 (731)
T KOG0347|consen 588 LPIFPVETDIMDALKE 603 (731)
T ss_pred CCceeccHHHHHHHHH
Confidence 4445555555554433
No 32
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.96 E-value=7.8e-28 Score=267.48 Aligned_cols=233 Identities=20% Similarity=0.285 Sum_probs=175.6
Q ss_pred hHHHHHHHHH-------hCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcC--------
Q 011052 6 FEEDVELILE-------NLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTT-------- 70 (494)
Q Consensus 6 F~~~i~~Il~-------~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~-------- 70 (494)
|..++..+++ ..+.++|+++||||+++..+ +++.++..|..+ +.. ........++..+..+
T Consensus 173 fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~-i~~--~~~~~~~~~~~~~~p~~~~~~~~~ 248 (742)
T TIGR03817 173 FGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVA-VTE--DGSPRGARTVALWEPPLTELTGEN 248 (742)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEE-ECC--CCCCcCceEEEEecCCcccccccc
Confidence 5555555444 44678999999999998865 677788777543 221 1111222222222221
Q ss_pred --------cccHHHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc---------cCceeeecCCCCHHHHHHHHccc
Q 011052 71 --------ATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS---------IIASEALHGDISQHQRERTLNGF 133 (494)
Q Consensus 71 --------~~~k~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~---------~~~~~~lhg~~~~~~R~~~l~~F 133 (494)
...+..++..++. .+.++||||+|++.|+.++..|.+ ...+..+||++++++|.+++++|
T Consensus 249 ~~~~r~~~~~~~~~~l~~l~~---~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f 325 (742)
T TIGR03817 249 GAPVRRSASAEAADLLADLVA---EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERAL 325 (742)
T ss_pred ccccccchHHHHHHHHHHHHH---CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHH
Confidence 1134444555543 457999999999999999998764 24688999999999999999999
Q ss_pred cCCCeeEEEechhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecC--hhhHHHHHHHHHHhCCCce
Q 011052 134 RQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFT--SSQRRTVRSLERDVGCKFE 211 (494)
Q Consensus 134 r~g~~~iLVaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~--~~e~~~l~~le~~~~~~~~ 211 (494)
++|++++|||||++++|||+|++++||||++|.+.++|+||+|||||.|+.|.+++++. +.|...+..+++.+..+++
T Consensus 326 ~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~~~~~e 405 (742)
T TIGR03817 326 RDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALFDRPVE 405 (742)
T ss_pred HcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHhcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999986 5677788888888888877
Q ss_pred e-cCCCCHHHHHHHHHHHHHHHHccCCccchhhhhH
Q 011052 212 F-VSPPVVEDVLESSAEQVVATLNGVHPESVEFFTP 246 (494)
Q Consensus 212 ~-~~~p~~~~i~~~~~~~~~~~l~~~~~~~~~~f~~ 246 (494)
. ...|....++..++......+ .+..++.+.|.+
T Consensus 406 ~~~~~~~n~~il~~hl~~aa~e~-~l~~~~~~~~~~ 440 (742)
T TIGR03817 406 ATVFDPDNPYVLGPHLCCAAAEL-PLTEADLELFGP 440 (742)
T ss_pred cceeCCCcHHHHHHHHHHHHhcC-CCChHHHHhhch
Confidence 6 345777778887777666544 444444555543
No 33
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=4.1e-29 Score=247.54 Aligned_cols=214 Identities=33% Similarity=0.479 Sum_probs=198.6
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHH
Q 011052 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ 80 (494)
+++|||.+++.+|+..+|..+|+++||||+|..+..+++.-+.+|..|.+. -+.++.+.+++.+..+...+|...|..
T Consensus 176 lfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRld--vetkise~lk~~f~~~~~a~K~aaLl~ 253 (529)
T KOG0337|consen 176 LFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLD--VETKISELLKVRFFRVRKAEKEAALLS 253 (529)
T ss_pred HHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEee--hhhhcchhhhhheeeeccHHHHHHHHH
Confidence 368999999999999999999999999999999999999999999988753 355677888999999999999999999
Q ss_pred HHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEE
Q 011052 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (494)
Q Consensus 81 ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~V 159 (494)
++.....+.++||||.|+..|+.+...|.. ++.+..+++.|++..|...+.+|+.++..+||.||+++||+|+|-.+.|
T Consensus 254 il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnv 333 (529)
T KOG0337|consen 254 ILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNV 333 (529)
T ss_pred HHhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCcccccc
Confidence 998876778999999999999999999986 7899999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceecCCC
Q 011052 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216 (494)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~p 216 (494)
||||+|.+...|+||+||+.|+|++|.+|.++.+.+..++-.|...++.++.....+
T Consensus 334 inyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr~~~~~~~~ 390 (529)
T KOG0337|consen 334 INYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGRPLIFAISH 390 (529)
T ss_pred ccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcCCceeeccch
Confidence 999999999999999999999999999999999999999999999998887765443
No 34
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.95 E-value=1.4e-27 Score=246.42 Aligned_cols=196 Identities=28% Similarity=0.502 Sum_probs=171.8
Q ss_pred CChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcc--------cHH
Q 011052 4 VGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTAT--------SKR 75 (494)
Q Consensus 4 ~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~--------~k~ 75 (494)
--|+++|..|+..+|..+|++.||||.|..+..+..+||++|..|..... ....-.|++|++..+.. .|+
T Consensus 183 ~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~--d~~L~GikQyv~~~~s~nnsveemrlkl 260 (980)
T KOG4284|consen 183 ESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNAD--DVQLFGIKQYVVAKCSPNNSVEEMRLKL 260 (980)
T ss_pred hhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccC--CceeechhheeeeccCCcchHHHHHHHH
Confidence 35999999999999999999999999999999999999999999887533 33345677777665542 366
Q ss_pred HHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCC
Q 011052 76 TILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP 154 (494)
Q Consensus 76 ~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip 154 (494)
+.|.++++.+ +-.++||||+....|+.++..|.. ++.|.++.|.|+|.+|..+++.+|.-.++|||+||+.+||||-|
T Consensus 261 q~L~~vf~~i-py~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~ 339 (980)
T KOG4284|consen 261 QKLTHVFKSI-PYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDAD 339 (980)
T ss_pred HHHHHHHhhC-chHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCcc
Confidence 7777777765 557999999999999999999985 89999999999999999999999999999999999999999999
Q ss_pred cccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhH-HHHHHH
Q 011052 155 NVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQR-RTVRSL 202 (494)
Q Consensus 155 ~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~-~~l~~l 202 (494)
+|++|||.|.|.+.++|.||+||+||.|..|.+++|+...+. ..+..+
T Consensus 340 ~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e~~~f~~m 388 (980)
T KOG4284|consen 340 NVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERELKGFTAM 388 (980)
T ss_pred ccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchhhhhhHHH
Confidence 999999999999999999999999999999999998876543 443333
No 35
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.95 E-value=7.3e-27 Score=260.12 Aligned_cols=199 Identities=19% Similarity=0.258 Sum_probs=155.8
Q ss_pred CCCCC--hHHHHHHH--HHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCccc-HH
Q 011052 1 MLAVG--FEEDVELI--LENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATS-KR 75 (494)
Q Consensus 1 mL~~G--F~~~i~~I--l~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~-k~ 75 (494)
|++.| |+++...| +....++.|+++||||++..+.+.+...+.-...+.+... .. ..++. |...+... ..
T Consensus 593 VSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~S-f~--RpNL~--y~Vv~k~kk~l 667 (1195)
T PLN03137 593 VSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQS-FN--RPNLW--YSVVPKTKKCL 667 (1195)
T ss_pred hhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecc-cC--ccceE--EEEeccchhHH
Confidence 35666 88887763 4555567899999999999988866666653322222211 11 22332 22222222 23
Q ss_pred HHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCC
Q 011052 76 TILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP 154 (494)
Q Consensus 76 ~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip 154 (494)
+.|..++.....+.++||||+|++.|+.+++.|.. ++.+..+||+|++.+|..++++|++|+++|||||+++++|||+|
T Consensus 668 e~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkP 747 (1195)
T PLN03137 668 EDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKP 747 (1195)
T ss_pred HHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCcc
Confidence 44555554433456899999999999999999986 89999999999999999999999999999999999999999999
Q ss_pred cccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHH
Q 011052 155 NVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLER 204 (494)
Q Consensus 155 ~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~ 204 (494)
+|++||||++|.+++.|+||+|||||.|..+.|++||...|...++.+..
T Consensus 748 DVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI~ 797 (1195)
T PLN03137 748 DVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMIS 797 (1195)
T ss_pred CCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999988877666643
No 36
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.95 E-value=3.1e-26 Score=244.06 Aligned_cols=196 Identities=23% Similarity=0.377 Sum_probs=153.2
Q ss_pred CCCC--hHHHHHHH---HHhCCCCCcEEEEeecCChHHHHHHHHHcC--CCcEEEeccccccccccceEEEEEEcCcccH
Q 011052 2 LAVG--FEEDVELI---LENLPPKRQSMLFSATMPSWVKKLSRKYLD--NPLNIDLVGNQDEKLAEGIKLYAISTTATSK 74 (494)
Q Consensus 2 L~~G--F~~~i~~I---l~~lp~~~q~ll~SATlp~~i~~l~~~~l~--~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k 74 (494)
++.| |+++...| ...+ ++.|++++|||+++.+...+...+. +|..+... .. ..++... +.......
T Consensus 140 ~~~g~~fr~~~~~l~~l~~~~-~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s---~~--r~nl~~~-v~~~~~~~ 212 (470)
T TIGR00614 140 SQWGHDFRPDYKALGSLKQKF-PNVPIMALTATASPSVREDILRQLNLKNPQIFCTS---FD--RPNLYYE-VRRKTPKI 212 (470)
T ss_pred CccccccHHHHHHHHHHHHHc-CCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCC---CC--CCCcEEE-EEeCCccH
Confidence 4455 77776654 3444 5789999999999988766555543 45443321 11 1223222 22222234
Q ss_pred HHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCC
Q 011052 75 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDI 153 (494)
Q Consensus 75 ~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDi 153 (494)
.+.+..++....++..+||||+|++.|+.+++.|.. ++.+..+|++|++.+|.+++++|++|+++|||||+++++|||+
T Consensus 213 ~~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~ 292 (470)
T TIGR00614 213 LEDLLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINK 292 (470)
T ss_pred HHHHHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCc
Confidence 444455554333556779999999999999999986 7899999999999999999999999999999999999999999
Q ss_pred CcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHH
Q 011052 154 PNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLER 204 (494)
Q Consensus 154 p~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~ 204 (494)
|+|++||||++|.+++.|+||+|||||.|..+.|++|+++.|...++.+..
T Consensus 293 p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~~ 343 (470)
T TIGR00614 293 PDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLFYAPADINRLRRLLM 343 (470)
T ss_pred ccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999887777643
No 37
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.94 E-value=9.8e-26 Score=245.87 Aligned_cols=231 Identities=16% Similarity=0.239 Sum_probs=166.9
Q ss_pred HHHHHHHHhCC-CCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCc----------ccHHH
Q 011052 8 EDVELILENLP-PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA----------TSKRT 76 (494)
Q Consensus 8 ~~i~~Il~~lp-~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~----------~~k~~ 76 (494)
+.+..+++.++ ..+|+++||||+|.+++.+ ++|+++|..|.+.+ .+...++++|+.... ..+..
T Consensus 308 DllL~llk~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~g----rt~~pV~~~yi~~~~~~~~~~~y~~~~k~~ 382 (675)
T PHA02653 308 DIIIAVARKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPG----GTLFPISEVYVKNKYNPKNKRAYIEEEKKN 382 (675)
T ss_pred hHHHHHHHHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCC----CcCCCeEEEEeecCcccccchhhhHHHHHH
Confidence 44556666554 4469999999999988887 57999998887642 233556777764331 12333
Q ss_pred HHHHHHHHh-ccCCcEEEEcCChhhHHHHHHHHhc---cCceeeecCCCCHHHHHHHHccc-cCCCeeEEEechhhhccC
Q 011052 77 ILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGF-RQGKFTVLVATDVAARGL 151 (494)
Q Consensus 77 ~L~~ll~~~-~~~~~~IVF~~t~~~~~~l~~~L~~---~~~~~~lhg~~~~~~R~~~l~~F-r~g~~~iLVaT~~~~~Gi 151 (494)
++..+.... ..++++||||+++++|+.+++.|.+ .+.+.+|||+|++. ++++++| ++++.+||||||+|++||
T Consensus 383 ~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGI 460 (675)
T PHA02653 383 IVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSV 460 (675)
T ss_pred HHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccc
Confidence 333333222 1346899999999999999999985 47899999999985 4667777 789999999999999999
Q ss_pred CCCcccEEEecC---CCC---------ChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceecCCCCHH
Q 011052 152 DIPNVDLIIHYE---LPN---------DPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVE 219 (494)
Q Consensus 152 Dip~v~~VI~~~---~P~---------~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~p~~~ 219 (494)
|||+|++|||++ .|. +.++|+||+|||||. ++|.|+.|+++.+... ..
T Consensus 461 DIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~~p-------------------I~ 520 (675)
T PHA02653 461 TIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLLKP-------------------IK 520 (675)
T ss_pred cccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHhHH-------------------HH
Confidence 999999999998 665 888999999999999 7999999999887421 22
Q ss_pred HHHHHHHHHHHHHHccCCccchhhhhHHHHHHHhhcCHHHHHHHHHHHcCCC
Q 011052 220 DVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFS 271 (494)
Q Consensus 220 ~i~~~~~~~~~~~l~~~~~~~~~~f~~~a~~l~~~~~~~~l~aal~~~~g~~ 271 (494)
++....+..++..++....+..+.+ +++.+..+.+.+|+..|..+.
T Consensus 521 ri~~~~L~~~vL~lk~~g~~~~~~~------~ldpP~~~~l~~A~~~L~~lg 566 (675)
T PHA02653 521 RIDSEFLHNYILYAKYFNLTLPEDL------FVIPSNLDRLRKTEEYIDSFN 566 (675)
T ss_pred HHhHHHHHHHHHHHHHcCCCCcccc------cCCCCCHHHHHHHHHHHHHcC
Confidence 2222234444444444433322221 577778888888887776554
No 38
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.94 E-value=7.8e-26 Score=251.93 Aligned_cols=244 Identities=17% Similarity=0.235 Sum_probs=175.7
Q ss_pred CCCCChHHH-HHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHH----
Q 011052 1 MLAVGFEED-VELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKR---- 75 (494)
Q Consensus 1 mL~~GF~~~-i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~---- 75 (494)
||++.|.-. +.+|++.++++.|+|+||||++... ...|+.++..|.+.+. ...++++|+.....++.
T Consensus 126 ~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~~~~---l~~~l~~~~vI~~~gr-----~~pVe~~y~~~~~~~~~~~~v 197 (819)
T TIGR01970 126 SLDADLGLALALDVQSSLREDLKILAMSATLDGER---LSSLLPDAPVVESEGR-----SFPVEIRYLPLRGDQRLEDAV 197 (819)
T ss_pred hhccchHHHHHHHHHHhcCCCceEEEEeCCCCHHH---HHHHcCCCcEEEecCc-----ceeeeeEEeecchhhhHHHHH
Confidence 355555332 3456667788999999999998763 3568877776665321 12366777665544332
Q ss_pred -HHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhcc
Q 011052 76 -TILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 150 (494)
Q Consensus 76 -~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~G 150 (494)
..+..++.. ..+++||||+++++++.+++.|.+ .+.+..+||+|++++|.++++.|++|..+||||||++++|
T Consensus 198 ~~~l~~~l~~--~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErg 275 (819)
T TIGR01970 198 SRAVEHALAS--ETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETS 275 (819)
T ss_pred HHHHHHHHHh--cCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhc
Confidence 223333332 357999999999999999999985 5789999999999999999999999999999999999999
Q ss_pred CCCCcccEEEecCCCCC------------------hhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCcee
Q 011052 151 LDIPNVDLIIHYELPND------------------PETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEF 212 (494)
Q Consensus 151 iDip~v~~VI~~~~P~~------------------~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~ 212 (494)
||||+|++|||+++|.. .++|+||+|||||. ++|.||.|+++.+...+.. +.
T Consensus 276 ItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~~~l~~---~~------ 345 (819)
T TIGR01970 276 LTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQHQRLPA---QD------ 345 (819)
T ss_pred ccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHHHhhhc---CC------
Confidence 99999999999998853 34689999999999 7999999999877543222 11
Q ss_pred cCCCCHHHHHHHHHHHHHHHHccCCccchhhhhHHHHHHHhhcCHHHHHHHHHHHcCCCCCC
Q 011052 213 VSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPP 274 (494)
Q Consensus 213 ~~~p~~~~i~~~~~~~~~~~l~~~~~~~~~~f~~~a~~l~~~~~~~~l~aal~~~~g~~~~~ 274 (494)
..||+...+..++..++.........| .+++.+..+.+.+|+..|..+....
T Consensus 346 -----~PEI~r~~L~~~~L~l~~~g~~~~~~~-----~~l~~P~~~~i~~a~~~L~~lgald 397 (819)
T TIGR01970 346 -----EPEILQADLSGLALELAQWGAKDPSDL-----RWLDAPPSVALAAARQLLQRLGALD 397 (819)
T ss_pred -----CcceeccCcHHHHHHHHHcCCCChhhC-----CCCCCcCHHHHHHHHHHHHHCCCCC
Confidence 233344444445555555433333333 4567777788888887776555443
No 39
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.94 E-value=3.4e-26 Score=235.91 Aligned_cols=199 Identities=30% Similarity=0.466 Sum_probs=172.3
Q ss_pred ChHHHHHHHHHhCC-CCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEE-cCcccHHHHHHHHH
Q 011052 5 GFEEDVELILENLP-PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAIS-TTATSKRTILSDLI 82 (494)
Q Consensus 5 GF~~~i~~Il~~lp-~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~-~~~~~k~~~L~~ll 82 (494)
+|.+++..|++.+. ++..+-+||||+|..++++++..+.++..|.+- .. +.....+.|..+. .....|.-.+.+++
T Consensus 305 ~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg-~~-~sa~~~V~QelvF~gse~~K~lA~rq~v 382 (593)
T KOG0344|consen 305 FFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVG-LR-NSANETVDQELVFCGSEKGKLLALRQLV 382 (593)
T ss_pred hHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEe-cc-hhHhhhhhhhheeeecchhHHHHHHHHH
Confidence 79999999999875 567888999999999999999998888877543 22 2224455554444 44557888888888
Q ss_pred HHhccCCcEEEEcCChhhHHHHHHHHh--ccCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEE
Q 011052 83 TVYAKGGKTIVFTQTKRDADEVSLALT--SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII 160 (494)
Q Consensus 83 ~~~~~~~~~IVF~~t~~~~~~l~~~L~--~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI 160 (494)
..- -..++|||+.+.+.|.+|++.|. ..+.+.++||+.++.+|+.++++||.|+++|||||++++||+|+.+|++||
T Consensus 383 ~~g-~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VI 461 (593)
T KOG0344|consen 383 ASG-FKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVI 461 (593)
T ss_pred hcc-CCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEE
Confidence 764 35799999999999999999995 478999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHh
Q 011052 161 HYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDV 206 (494)
Q Consensus 161 ~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~ 206 (494)
|||+|.+.-+|+||+||+||+|+.|.+|+||++.+...++.++...
T Consensus 462 nyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~ 507 (593)
T KOG0344|consen 462 NYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVM 507 (593)
T ss_pred ecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHH
Confidence 9999999999999999999999999999999999998888886654
No 40
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.93 E-value=2.7e-25 Score=243.31 Aligned_cols=189 Identities=20% Similarity=0.379 Sum_probs=147.6
Q ss_pred hHHHHHHH---HHhCCCCCcEEEEeecCChHHHHHHHHHc--CCCcEEEeccccccccccceEEEEEEcCcccHHHHHHH
Q 011052 6 FEEDVELI---LENLPPKRQSMLFSATMPSWVKKLSRKYL--DNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (494)
Q Consensus 6 F~~~i~~I---l~~lp~~~q~ll~SATlp~~i~~l~~~~l--~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ 80 (494)
|++++..| ...+ ++.|++++|||+++.+...+...+ .+|... +.. .. ..++. +.......+.+.+..
T Consensus 158 fr~~y~~L~~l~~~~-p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~-~~~--~~--r~nl~--~~v~~~~~~~~~l~~ 229 (607)
T PRK11057 158 FRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQ-ISS--FD--RPNIR--YTLVEKFKPLDQLMR 229 (607)
T ss_pred ccHHHHHHHHHHHhC-CCCcEEEEecCCChhHHHHHHHHhCCCCeEEE-ECC--CC--CCcce--eeeeeccchHHHHHH
Confidence 66665443 4444 478999999999988766444443 344332 211 11 12232 222222334444444
Q ss_pred HHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEE
Q 011052 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (494)
Q Consensus 81 ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~V 159 (494)
++... .+.++||||+|++.|+.+++.|.. ++.+..+|++|++++|.++++.|++++++|||||+++++|||+|+|++|
T Consensus 230 ~l~~~-~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~V 308 (607)
T PRK11057 230 YVQEQ-RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFV 308 (607)
T ss_pred HHHhc-CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEE
Confidence 55443 567999999999999999999986 7899999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHH
Q 011052 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 203 (494)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le 203 (494)
|||++|.+.++|+||+|||||.|..+.|++|+++.|...++.+.
T Consensus 309 I~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~ 352 (607)
T PRK11057 309 VHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCL 352 (607)
T ss_pred EEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987776654
No 41
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.93 E-value=2.2e-25 Score=248.79 Aligned_cols=240 Identities=18% Similarity=0.242 Sum_probs=178.0
Q ss_pred HHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHH-----HHHHHHHHh
Q 011052 11 ELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRT-----ILSDLITVY 85 (494)
Q Consensus 11 ~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~-----~L~~ll~~~ 85 (494)
.++++.++++.|+|+||||++.. .+ ..|+.++..|.+.+. ...++++|+..+...+.+ .+..++..
T Consensus 140 ~~i~~~lr~~lqlilmSATl~~~--~l-~~~~~~~~~I~~~gr-----~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~- 210 (812)
T PRK11664 140 LDVQQGLRDDLKLLIMSATLDND--RL-QQLLPDAPVIVSEGR-----SFPVERRYQPLPAHQRFDEAVARATAELLRQ- 210 (812)
T ss_pred HHHHHhCCccceEEEEecCCCHH--HH-HHhcCCCCEEEecCc-----cccceEEeccCchhhhHHHHHHHHHHHHHHh-
Confidence 45677788899999999999875 23 567877766655322 123677777665544443 23333322
Q ss_pred ccCCcEEEEcCChhhHHHHHHHHhc----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEe
Q 011052 86 AKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH 161 (494)
Q Consensus 86 ~~~~~~IVF~~t~~~~~~l~~~L~~----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~ 161 (494)
..+.+|||||++++++.+++.|.+ .+.+..+||+|++.+|.++++.|++|+.+||||||++++|||||+|++|||
T Consensus 211 -~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID 289 (812)
T PRK11664 211 -ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVD 289 (812)
T ss_pred -CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEE
Confidence 358999999999999999999985 577899999999999999999999999999999999999999999999999
Q ss_pred cCCCCC------------------hhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceecCCCCHHHHHH
Q 011052 162 YELPND------------------PETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLE 223 (494)
Q Consensus 162 ~~~P~~------------------~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~p~~~~i~~ 223 (494)
+++|.. .++|+||+|||||. .+|.||.++++.+...+ ..-...||+.
T Consensus 290 ~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~~~l--------------~~~~~PEI~r 354 (812)
T PRK11664 290 SGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQAERA--------------AAQSEPEILH 354 (812)
T ss_pred CCCcccccccccCCcceeEEEeechhhhhhhccccCCC-CCcEEEEecCHHHHhhC--------------ccCCCCceec
Confidence 887753 46899999999999 59999999998875321 1122346666
Q ss_pred HHHHHHHHHHccCCccchhhhhHHHHHHHhhcCHHHHHHHHHHHcCCCCCCCCcccc
Q 011052 224 SSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLI 280 (494)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~f~~~a~~l~~~~~~~~l~aal~~~~g~~~~~~~rsl~ 280 (494)
..+..++..++.........| .+++.+.++.+.+|+..|..+........++
T Consensus 355 ~dL~~~~L~l~~~g~~~~~~~-----~~ld~P~~~~~~~A~~~L~~lgald~~g~lT 406 (812)
T PRK11664 355 SDLSGLLLELLQWGCHDPAQL-----SWLDQPPAAALAAAKRLLQQLGALDGQGRLT 406 (812)
T ss_pred cchHHHHHHHHHcCCCCHHhC-----CCCCCCCHHHHHHHHHHHHHCCCCCCCCCcC
Confidence 666666666666544333333 4667788888888888876555443333333
No 42
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.93 E-value=6.6e-25 Score=241.11 Aligned_cols=183 Identities=21% Similarity=0.277 Sum_probs=140.9
Q ss_pred CCCChHHHHHHHHHhC--CCC---CcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHH
Q 011052 2 LAVGFEEDVELILENL--PPK---RQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRT 76 (494)
Q Consensus 2 L~~GF~~~i~~Il~~l--p~~---~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~ 76 (494)
|+|||.++++.|++.+ ++. +|+++||||+|.++.++++.++.++..+.+.. .......+.++ +.++...|..
T Consensus 182 Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~--~~l~a~ki~q~-v~v~~e~Kl~ 258 (844)
T TIGR02621 182 LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLK--KRLAAKKIVKL-VPPSDEKFLS 258 (844)
T ss_pred hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeeccc--ccccccceEEE-EecChHHHHH
Confidence 6899999999999975 443 69999999999999999888988887766542 23334455554 3333334443
Q ss_pred HHHH-HHHHh-ccCCcEEEEcCChhhHHHHHHHHhccCceeeecCCCCHHHHH-----HHHccccC----CC-------e
Q 011052 77 ILSD-LITVY-AKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRE-----RTLNGFRQ----GK-------F 138 (494)
Q Consensus 77 ~L~~-ll~~~-~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~lhg~~~~~~R~-----~~l~~Fr~----g~-------~ 138 (494)
.+.. +...+ ...+++||||||++.|+.+++.|.+.- ...+||+|++.+|+ +++++|++ ++ .
T Consensus 259 ~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g-~~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~ 337 (844)
T TIGR02621 259 TMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEK-FELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGT 337 (844)
T ss_pred HHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcC-CeEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccc
Confidence 3222 22212 245789999999999999999998632 28999999999999 88999987 43 6
Q ss_pred eEEEechhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCc-eEEEec
Q 011052 139 TVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEG-TAILMF 191 (494)
Q Consensus 139 ~iLVaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g-~~i~l~ 191 (494)
.|||||+++++||||+. ++||++..| .++|+||+||+||.|+.+ ..++++
T Consensus 338 ~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv 388 (844)
T TIGR02621 338 VYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVV 388 (844)
T ss_pred eEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEE
Confidence 89999999999999987 889987776 689999999999999753 335554
No 43
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.91 E-value=1.1e-23 Score=230.76 Aligned_cols=189 Identities=23% Similarity=0.431 Sum_probs=151.4
Q ss_pred hHHHHHHH---HHhCCCCCcEEEEeecCChHHHHHHHHHcC--CCcEEEeccccccccccceEEEEEEcCcccHHHHHHH
Q 011052 6 FEEDVELI---LENLPPKRQSMLFSATMPSWVKKLSRKYLD--NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (494)
Q Consensus 6 F~~~i~~I---l~~lp~~~q~ll~SATlp~~i~~l~~~~l~--~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ 80 (494)
|+++...| ...+| +.+++++|||++..+...+...+. ++..+ ... .. ..++. +.......+.+.+.+
T Consensus 146 frp~y~~l~~l~~~~~-~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~--~~~-~~--r~nl~--~~v~~~~~~~~~l~~ 217 (591)
T TIGR01389 146 FRPEYQRLGSLAERFP-QVPRIALTATADAETRQDIRELLRLADANEF--ITS-FD--RPNLR--FSVVKKNNKQKFLLD 217 (591)
T ss_pred cHHHHHHHHHHHHhCC-CCCEEEEEeCCCHHHHHHHHHHcCCCCCCeE--ecC-CC--CCCcE--EEEEeCCCHHHHHHH
Confidence 77766555 34454 456999999999988876666665 33322 111 11 12222 222333456666666
Q ss_pred HHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEE
Q 011052 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (494)
Q Consensus 81 ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~V 159 (494)
++... .+.++||||+|++.|+.+++.|.. ++.+..+|++|++++|..+++.|++|+++|||||+++++|||+|+|++|
T Consensus 218 ~l~~~-~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~V 296 (591)
T TIGR01389 218 YLKKH-RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFV 296 (591)
T ss_pred HHHhc-CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEE
Confidence 66654 357999999999999999999985 7899999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHH
Q 011052 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 203 (494)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le 203 (494)
|||++|.+.+.|+|++||+||.|..+.|++++++.|...++.+.
T Consensus 297 I~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~i 340 (591)
T TIGR01389 297 IHYDMPGNLESYYQEAGRAGRDGLPAEAILLYSPADIALLKRRI 340 (591)
T ss_pred EEcCCCCCHHHHhhhhccccCCCCCceEEEecCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987766654
No 44
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.91 E-value=6.7e-23 Score=236.97 Aligned_cols=253 Identities=22% Similarity=0.339 Sum_probs=169.1
Q ss_pred hHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcC--CCcEEEeccccccccccceEEEEEEcCccc----------
Q 011052 6 FEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLD--NPLNIDLVGNQDEKLAEGIKLYAISTTATS---------- 73 (494)
Q Consensus 6 F~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~--~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~---------- 73 (494)
|...|+.|...++.+.|+|++|||+++ .+++++ |+. ++..| +.....+ ...+++. +......
T Consensus 145 Lel~LeRL~~l~~~~~QrIgLSATI~n-~eevA~-~L~g~~pv~I--v~~~~~r-~~~l~v~-vp~~d~~~~~~~~~~~~ 218 (1490)
T PRK09751 145 LALSLERLDALLHTSAQRIGLSATVRS-ASDVAA-FLGGDRPVTV--VNPPAMR-HPQIRIV-VPVANMDDVSSVASGTG 218 (1490)
T ss_pred HHHHHHHHHHhCCCCCeEEEEEeeCCC-HHHHHH-HhcCCCCEEE--ECCCCCc-ccceEEE-EecCchhhccccccccc
Confidence 566788888888888999999999987 455654 554 24433 2211111 1223322 1111100
Q ss_pred -----------HHHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhccC------------------------------
Q 011052 74 -----------KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSII------------------------------ 112 (494)
Q Consensus 74 -----------k~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~------------------------------ 112 (494)
...+...++..+....++||||||+..|+.++..|++..
T Consensus 219 ~~~~~~r~~~i~~~v~~~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (1490)
T PRK09751 219 EDSHAGREGSIWPYIETGILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQS 298 (1490)
T ss_pred cccchhhhhhhhHHHHHHHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhcccc
Confidence 011223445444456899999999999999999887421
Q ss_pred ----ceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCC-CCCceE
Q 011052 113 ----ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRA-GKEGTA 187 (494)
Q Consensus 113 ----~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~-G~~g~~ 187 (494)
.+.++||+|++++|..+++.|++|++++||||+.+++||||++|++||||+.|.++.+|+||+||+||. +..+.+
T Consensus 299 ~~~~ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~g 378 (1490)
T PRK09751 299 SDVFIARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKG 378 (1490)
T ss_pred ccceeeeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEE
Confidence 256899999999999999999999999999999999999999999999999999999999999999996 344555
Q ss_pred EEecChhhHHHH---HHHHHHhCCCceecCCCCH-HHHHHHHHHHHHHHHccCCccchhhhhHHHHH--HHhhcCHHHHH
Q 011052 188 ILMFTSSQRRTV---RSLERDVGCKFEFVSPPVV-EDVLESSAEQVVATLNGVHPESVEFFTPTAQR--LIEEKGTDALA 261 (494)
Q Consensus 188 i~l~~~~e~~~l---~~le~~~~~~~~~~~~p~~-~~i~~~~~~~~~~~l~~~~~~~~~~f~~~a~~--l~~~~~~~~l~ 261 (494)
+++..... ..+ -.++.+....++.+.+|.. -+++..++-.+... ..++.+.+ | +.... -+..+..+.+.
T Consensus 379 li~p~~r~-dlle~~~~ve~~l~g~iE~~~~p~nplDVLaqqiva~a~~-~~~~~d~l--~-~~vrra~pf~~L~~~~f~ 453 (1490)
T PRK09751 379 LFFPRTRR-DLVDSAVIVECMFAGRLENLTPPHNPLDVLAQQTVAAAAM-DALQVDEW--Y-SRVRRAAPWKDLPRRVFD 453 (1490)
T ss_pred EEEeCcHH-HHHhhHHHHHHHhcCCCCccCCCCChHHHHHHHHHHHHhc-CCCCHHHH--H-HHhhccCCcccCCHHHHH
Confidence 54444322 222 2467777888887666644 46776665555442 22222211 1 11111 12345667777
Q ss_pred HHHHHHcC
Q 011052 262 AALAQLSG 269 (494)
Q Consensus 262 aal~~~~g 269 (494)
+.|..+.+
T Consensus 454 ~vl~~L~~ 461 (1490)
T PRK09751 454 ATLDMLSG 461 (1490)
T ss_pred HHHHHHhc
Confidence 77777765
No 45
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.91 E-value=3.3e-23 Score=235.77 Aligned_cols=240 Identities=18% Similarity=0.336 Sum_probs=171.8
Q ss_pred CCCCChHHH-HHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCccc---HHH
Q 011052 1 MLAVGFEED-VELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATS---KRT 76 (494)
Q Consensus 1 mL~~GF~~~-i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~---k~~ 76 (494)
||+++|... +..++... ++.|+|+||||++. ..+++.|.+.| .|.+.+.. ..++++|....... +.+
T Consensus 199 sLn~DfLLg~Lk~lL~~r-pdlKvILmSATid~--e~fs~~F~~ap-vI~V~Gr~-----~pVei~y~p~~~~~~~~~~d 269 (1294)
T PRK11131 199 SLNIDFILGYLKELLPRR-PDLKVIITSATIDP--ERFSRHFNNAP-IIEVSGRT-----YPVEVRYRPIVEEADDTERD 269 (1294)
T ss_pred ccccchHHHHHHHhhhcC-CCceEEEeeCCCCH--HHHHHHcCCCC-EEEEcCcc-----ccceEEEeecccccchhhHH
Confidence 688999764 55555443 47899999999975 46666555444 46554321 23556665543221 233
Q ss_pred HHHHHHH---Hh--ccCCcEEEEcCChhhHHHHHHHHhc-cC---ceeeecCCCCHHHHHHHHccccCCCeeEEEechhh
Q 011052 77 ILSDLIT---VY--AKGGKTIVFTQTKRDADEVSLALTS-II---ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 147 (494)
Q Consensus 77 ~L~~ll~---~~--~~~~~~IVF~~t~~~~~~l~~~L~~-~~---~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~ 147 (494)
.+..++. .+ ...+++||||+++++++.+++.|.+ .+ .+.++||+|++++|.++++. .+..+||||||++
T Consensus 270 ~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIA 347 (1294)
T PRK11131 270 QLQAIFDAVDELGREGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVA 347 (1294)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHH
Confidence 3333332 22 2457899999999999999999985 33 47789999999999999987 4678999999999
Q ss_pred hccCCCCcccEEEecC---------------CC---CChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCC
Q 011052 148 ARGLDIPNVDLIIHYE---------------LP---NDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 209 (494)
Q Consensus 148 ~~GiDip~v~~VI~~~---------------~P---~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~ 209 (494)
++|||||+|++|||++ +| .+.++|+||+|||||. .+|.||.+|++.+...+.
T Consensus 348 EtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~~~~~--------- 417 (1294)
T PRK11131 348 ETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDFLSRP--------- 417 (1294)
T ss_pred hhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHHHhhh---------
Confidence 9999999999999986 34 4568999999999999 699999999987743221
Q ss_pred ceecCCCCHHHHHHHHHHHHHHHHccCCccchhhhhHHHHHHHhhcCHHHHHHHHHHHcCCC
Q 011052 210 FEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFS 271 (494)
Q Consensus 210 ~~~~~~p~~~~i~~~~~~~~~~~l~~~~~~~~~~f~~~a~~l~~~~~~~~l~aal~~~~g~~ 271 (494)
.-+..||+...+..++..++......+..| .+++.+..+.+..++..|..+.
T Consensus 418 -----~~~~PEIlR~~L~~viL~lk~lgl~di~~F-----~fldpP~~~~i~~al~~L~~Lg 469 (1294)
T PRK11131 418 -----EFTDPEILRTNLASVILQMTALGLGDIAAF-----PFVEAPDKRNIQDGVRLLEELG 469 (1294)
T ss_pred -----cccCCccccCCHHHHHHHHHHcCCCCccee-----eCCCCCCHHHHHHHHHHHHHCC
Confidence 112345666667777777776655555555 4677778888888777775443
No 46
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.90 E-value=1.7e-23 Score=211.57 Aligned_cols=191 Identities=28% Similarity=0.434 Sum_probs=161.4
Q ss_pred hCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEecc--ccccccccceEEEEEEcCcccHHHHHHHHHHHhccCCcEEE
Q 011052 16 NLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVG--NQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIV 93 (494)
Q Consensus 16 ~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~--~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IV 93 (494)
.+++..+.++||||+...-.++...-+..|....+.. ...-.++..+.|+++.+...-|.-.+..++... +-.++|+
T Consensus 356 ~~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~-k~~r~lc 434 (620)
T KOG0350|consen 356 KLYPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSN-KLNRTLC 434 (620)
T ss_pred CcCchhHhhhcchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHh-hcceEEE
Confidence 3455677899999997776677766777886554432 112345677888888888877888888888776 5689999
Q ss_pred EcCChhhHHHHHHHHh-c----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEecCCCCCh
Q 011052 94 FTQTKRDADEVSLALT-S----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDP 168 (494)
Q Consensus 94 F~~t~~~~~~l~~~L~-~----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~~~~P~~~ 168 (494)
|+++.+.+..++..|+ . .+.+..+.|.++...|.+.+++|+.|+++||||||+++||||+.+|+.|||||+|.+.
T Consensus 435 f~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ 514 (620)
T KOG0350|consen 435 FVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASD 514 (620)
T ss_pred EecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchh
Confidence 9999999999999987 1 4567779999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhC
Q 011052 169 ETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVG 207 (494)
Q Consensus 169 ~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~ 207 (494)
.+|+||+|||+|+|+.|.|++++..++.+.+.++.+..+
T Consensus 515 ktyVHR~GRTARAgq~G~a~tll~~~~~r~F~klL~~~~ 553 (620)
T KOG0350|consen 515 KTYVHRAGRTARAGQDGYAITLLDKHEKRLFSKLLKKTN 553 (620)
T ss_pred hHHHHhhcccccccCCceEEEeeccccchHHHHHHHHhc
Confidence 999999999999999999999999999887776666554
No 47
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.90 E-value=1.2e-22 Score=228.82 Aligned_cols=191 Identities=18% Similarity=0.280 Sum_probs=149.2
Q ss_pred HHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHHHHHHhcc
Q 011052 8 EDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAK 87 (494)
Q Consensus 8 ~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~ 87 (494)
.+..++++.++.++|+++||||+++....++...+.++..|...+. . ...+++++.... ...+...++.....
T Consensus 587 v~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~--~--R~~V~t~v~~~~---~~~i~~~i~~el~~ 659 (926)
T TIGR00580 587 VKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPE--D--RLPVRTFVMEYD---PELVREAIRRELLR 659 (926)
T ss_pred hhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCC--C--ccceEEEEEecC---HHHHHHHHHHHHHc
Confidence 3456777888889999999999877766666666667776654321 1 123444443222 12222334444456
Q ss_pred CCcEEEEcCChhhHHHHHHHHhc---cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEecCC
Q 011052 88 GGKTIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYEL 164 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~---~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~~~~ 164 (494)
+++++||||+++.++.+++.|++ .+.+..+||+|++.+|++++++|++|+++|||||+++++|||+|++++||+++.
T Consensus 660 g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a 739 (926)
T TIGR00580 660 GGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERA 739 (926)
T ss_pred CCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecC
Confidence 78999999999999999999986 578999999999999999999999999999999999999999999999999998
Q ss_pred CC-ChhhHHHHhcccCCCCCCceEEEecCh------hhHHHHHHHHHH
Q 011052 165 PN-DPETFVHRSGRTGRAGKEGTAILMFTS------SQRRTVRSLERD 205 (494)
Q Consensus 165 P~-~~~~y~qr~GR~gR~G~~g~~i~l~~~------~e~~~l~~le~~ 205 (494)
|. ...+|+||+||+||.|+.|.|++++.+ ...+.++.|++.
T Consensus 740 ~~~gls~l~Qr~GRvGR~g~~g~aill~~~~~~l~~~~~~RL~~~~~~ 787 (926)
T TIGR00580 740 DKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQKALTEDAQKRLEAIQEF 787 (926)
T ss_pred CCCCHHHHHHHhcCCCCCCCCeEEEEEECCcccCCHHHHHHHHHHHHh
Confidence 75 678999999999999999999999854 334555655543
No 48
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.89 E-value=7.2e-22 Score=223.93 Aligned_cols=254 Identities=20% Similarity=0.268 Sum_probs=156.4
Q ss_pred HHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCC------CcEEEeccccccccccceEEEEEE-------cCcccHH
Q 011052 9 DVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDN------PLNIDLVGNQDEKLAEGIKLYAIS-------TTATSKR 75 (494)
Q Consensus 9 ~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~------p~~i~~~~~~~~~~~~~i~~~~~~-------~~~~~k~ 75 (494)
.++.+....+...|++++|||+++ ...+++ ++.. +..+.++..... ..+...... .......
T Consensus 196 ~L~rL~~l~~~~~q~IglSATl~~-~~~va~-~L~~~~~~~~~r~~~iv~~~~~---k~~~i~v~~p~~~l~~~~~~~~~ 270 (876)
T PRK13767 196 SLERLEELAGGEFVRIGLSATIEP-LEEVAK-FLVGYEDDGEPRDCEIVDARFV---KPFDIKVISPVDDLIHTPAEEIS 270 (876)
T ss_pred HHHHHHHhcCCCCeEEEEecccCC-HHHHHH-HhcCccccCCCCceEEEccCCC---ccceEEEeccCccccccccchhH
Confidence 345555555568899999999976 233433 3321 222222211111 111111110 1111111
Q ss_pred H-HHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhcc-------CceeeecCCCCHHHHHHHHccccCCCeeEEEechhh
Q 011052 76 T-ILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-------IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 147 (494)
Q Consensus 76 ~-~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~~-------~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~ 147 (494)
. ++..+.+......++||||||++.|+.++..|.+. ..+.++||+|++++|..++++|++|.++|||||+++
T Consensus 271 ~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~L 350 (876)
T PRK13767 271 EALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSL 350 (876)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChH
Confidence 2 22223333345689999999999999999999752 568999999999999999999999999999999999
Q ss_pred hccCCCCcccEEEecCCCCChhhHHHHhcccCCC-CCCceEEEecCh-hh-HHHHHHHHHHhCCCceecCCCC-HHHHHH
Q 011052 148 ARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRA-GKEGTAILMFTS-SQ-RRTVRSLERDVGCKFEFVSPPV-VEDVLE 223 (494)
Q Consensus 148 ~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~-G~~g~~i~l~~~-~e-~~~l~~le~~~~~~~~~~~~p~-~~~i~~ 223 (494)
++|||+|+|++||+|+.|.++.+|+||+||+||. |..+.+++++.. .| .+....++......++.+.+|. ..+++.
T Consensus 351 e~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~~~~l~e~~~~~~~~~~~~ie~~~~~~~~~dvl~ 430 (876)
T PRK13767 351 ELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVDRDDLVECAVLLKKAREGKIDRVHIPKNPLDVLA 430 (876)
T ss_pred HhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcCchhHHHHHHHHHHHHhCCCCCCCCCCCcHHHHH
Confidence 9999999999999999999999999999999986 444444444332 22 2223334455555566655553 456666
Q ss_pred HHHHHHHHHHccCCccchhhhhHHHHHHHhhcCHHHHHHHHHHHcC
Q 011052 224 SSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSG 269 (494)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~f~~~a~~l~~~~~~~~l~aal~~~~g 269 (494)
.++..+... ...+.+.+-.+...+ -.+.....+.+...+..+.+
T Consensus 431 q~i~~~~~~-~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~l~~l~~ 474 (876)
T PRK13767 431 QHIVGMAIE-RPWDIEEAYNIVRRA-YPYRDLSDEDFESVLRYLAG 474 (876)
T ss_pred HHHHHHHHc-CCCCHHHHHHHHhcc-CCcccCCHHHHHHHHHHHhc
Confidence 555443333 222222221111111 01233456666666666653
No 49
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.89 E-value=3.8e-22 Score=229.14 Aligned_cols=188 Identities=16% Similarity=0.241 Sum_probs=147.0
Q ss_pred HHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHHHHHHhccCCc
Q 011052 11 ELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGK 90 (494)
Q Consensus 11 ~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~ 90 (494)
.++++.++.++|+++||||+++.+..++...+.++..|..... . ...++++...... ......++..+..+++
T Consensus 739 ~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~--~--r~~v~~~~~~~~~---~~~k~~il~el~r~gq 811 (1147)
T PRK10689 739 KERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPA--R--RLAVKTFVREYDS---LVVREAILREILRGGQ 811 (1147)
T ss_pred HHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCC--C--CCCceEEEEecCc---HHHHHHHHHHHhcCCe
Confidence 4667888899999999999888888888888888887765321 1 1234444333221 1223344444445689
Q ss_pred EEEEcCChhhHHHHHHHHhc---cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEecCCC-C
Q 011052 91 TIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELP-N 166 (494)
Q Consensus 91 ~IVF~~t~~~~~~l~~~L~~---~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~~~~P-~ 166 (494)
++||||+++.++.+++.|.+ .+.+.++||+|++.+|++++++|++|+++|||||+++++|||+|++++||.++.. .
T Consensus 812 v~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~f 891 (1147)
T PRK10689 812 VYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHF 891 (1147)
T ss_pred EEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCCCC
Confidence 99999999999999999986 3679999999999999999999999999999999999999999999999954432 3
Q ss_pred ChhhHHHHhcccCCCCCCceEEEecCh------hhHHHHHHHHHH
Q 011052 167 DPETFVHRSGRTGRAGKEGTAILMFTS------SQRRTVRSLERD 205 (494)
Q Consensus 167 ~~~~y~qr~GR~gR~G~~g~~i~l~~~------~e~~~l~~le~~ 205 (494)
+..+|+||+||+||.|+.|.|++++.+ ...+.++.|++.
T Consensus 892 glaq~~Qr~GRvGR~g~~g~a~ll~~~~~~~~~~~~~rl~~~~~~ 936 (1147)
T PRK10689 892 GLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASL 936 (1147)
T ss_pred CHHHHHHHhhccCCCCCceEEEEEeCCCcccCHHHHHHHHHHHHh
Confidence 566799999999999999999998753 334566666654
No 50
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.89 E-value=1.7e-22 Score=208.18 Aligned_cols=179 Identities=24% Similarity=0.309 Sum_probs=130.8
Q ss_pred HHHHHHhCC-CCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEE--EcCcccHHHHHHHHHHHhc
Q 011052 10 VELILENLP-PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAI--STTATSKRTILSDLITVYA 86 (494)
Q Consensus 10 i~~Il~~lp-~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~--~~~~~~k~~~L~~ll~~~~ 86 (494)
+..+++.++ .+.|+++||||+|+.+.++++.+...+...... ... ......+.+. ......+.+.+..+++...
T Consensus 144 l~~~l~~l~~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 220 (358)
T TIGR01587 144 ILAVLEVLKDNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLD-LKE--ERRFERHRFIKIESDKVGEISSLERLLEFIK 220 (358)
T ss_pred HHHHHHHHHHcCCCEEEEecCchHHHHHHHhcCCCcccccCCC-Ccc--ccccccccceeeccccccCHHHHHHHHHHhh
Confidence 555555554 478999999999988877776554332211111 000 0001122221 2222356677777777766
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhcc-C--ceeeecCCCCHHHHHHH----HccccCCCeeEEEechhhhccCCCCcccEE
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTSI-I--ASEALHGDISQHQRERT----LNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~~-~--~~~~lhg~~~~~~R~~~----l~~Fr~g~~~iLVaT~~~~~GiDip~v~~V 159 (494)
++.++||||+|++.|+.+++.|.+. . .+..+||++++.+|.++ ++.|++++.+|||||+++++|+|++ +++|
T Consensus 221 ~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~v 299 (358)
T TIGR01587 221 KGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVM 299 (358)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEE
Confidence 6789999999999999999999863 3 48999999999999764 8999999999999999999999996 8899
Q ss_pred EecCCCCChhhHHHHhcccCCCCCC----ceEEEecChh
Q 011052 160 IHYELPNDPETFVHRSGRTGRAGKE----GTAILMFTSS 194 (494)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~G~~----g~~i~l~~~~ 194 (494)
|++..| +++|+||+||+||.|+. +..+++....
T Consensus 300 i~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~ 336 (358)
T TIGR01587 300 ITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAP 336 (358)
T ss_pred EEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecC
Confidence 998776 78999999999998854 3566665543
No 51
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.88 E-value=8.3e-22 Score=225.13 Aligned_cols=242 Identities=17% Similarity=0.292 Sum_probs=173.1
Q ss_pred CCCCChHHH-HHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCc------cc
Q 011052 1 MLAVGFEED-VELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA------TS 73 (494)
Q Consensus 1 mL~~GF~~~-i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~------~~ 73 (494)
||+++|... +..|+... ++.|+|+||||++. ..+++.|.+.| .|.+.+.. ..++.+|..... .+
T Consensus 192 sL~~D~LL~lLk~il~~r-pdLKlIlmSATld~--~~fa~~F~~ap-vI~V~Gr~-----~PVev~Y~~~~~~~~~~~~~ 262 (1283)
T TIGR01967 192 SLNIDFLLGYLKQLLPRR-PDLKIIITSATIDP--ERFSRHFNNAP-IIEVSGRT-----YPVEVRYRPLVEEQEDDDLD 262 (1283)
T ss_pred hccchhHHHHHHHHHhhC-CCCeEEEEeCCcCH--HHHHHHhcCCC-EEEECCCc-----ccceeEEecccccccchhhh
Confidence 578888875 67777665 47899999999974 46666554444 46554321 123444443321 12
Q ss_pred HHHHHHHHHHHh--ccCCcEEEEcCChhhHHHHHHHHhc----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhh
Q 011052 74 KRTILSDLITVY--AKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 147 (494)
Q Consensus 74 k~~~L~~ll~~~--~~~~~~IVF~~t~~~~~~l~~~L~~----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~ 147 (494)
+.+.+..++... ...+.+|||++++++++.+++.|.+ .+.+..+||+|++++|.++++.+. ..+||||||++
T Consensus 263 ~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~~--~rkIVLATNIA 340 (1283)
T TIGR01967 263 QLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPHS--GRRIVLATNVA 340 (1283)
T ss_pred HHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCCC--CceEEEeccHH
Confidence 334343434332 2457999999999999999999985 245889999999999999987753 46899999999
Q ss_pred hccCCCCcccEEEecCCC------------------CChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCC
Q 011052 148 ARGLDIPNVDLIIHYELP------------------NDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 209 (494)
Q Consensus 148 ~~GiDip~v~~VI~~~~P------------------~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~ 209 (494)
++|||||+|++|||++++ .+.++|+||+|||||.+ +|.||.+|+..+...+..
T Consensus 341 EtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~~~~~~-------- 411 (1283)
T TIGR01967 341 ETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDFNSRPE-------- 411 (1283)
T ss_pred HhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHHHhhhh--------
Confidence 999999999999999854 35689999999999998 999999999877533211
Q ss_pred ceecCCCCHHHHHHHHHHHHHHHHccCCccchhhhhHHHHHHHhhcCHHHHHHHHHHHcCCCCC
Q 011052 210 FEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRP 273 (494)
Q Consensus 210 ~~~~~~p~~~~i~~~~~~~~~~~l~~~~~~~~~~f~~~a~~l~~~~~~~~l~aal~~~~g~~~~ 273 (494)
-+..||+...+..++..++......+..| .+++.+..+.+..++..|..+...
T Consensus 412 ------~~~PEIlR~~L~~viL~l~~lg~~di~~f-----~fldpP~~~~i~~A~~~L~~LGAl 464 (1283)
T TIGR01967 412 ------FTDPEILRTNLASVILQMLALRLGDIAAF-----PFIEAPDPRAIRDGFRLLEELGAL 464 (1283)
T ss_pred ------ccCcccccccHHHHHHHHHhcCCCCcccc-----cCCCCCCHHHHHHHHHHHHHCCCC
Confidence 12345666667777777776554444444 467778888888888877654443
No 52
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.88 E-value=9.3e-22 Score=208.40 Aligned_cols=192 Identities=26% Similarity=0.400 Sum_probs=149.1
Q ss_pred hHHHHHHHH---HhCCCCCcEEEEeecCChHHHHHHHHHcC--CCcEEEeccccccccccceEEEEEEcCcccHHHHHHH
Q 011052 6 FEEDVELIL---ENLPPKRQSMLFSATMPSWVKKLSRKYLD--NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (494)
Q Consensus 6 F~~~i~~Il---~~lp~~~q~ll~SATlp~~i~~l~~~~l~--~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ 80 (494)
|+++...+- ..+| +.+++.+|||.++.+..-+...|. ++..+... .. .+++........ +.+.+.+ -
T Consensus 150 FRP~Y~~lg~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~s---fd--RpNi~~~v~~~~-~~~~q~~-f 221 (590)
T COG0514 150 FRPDYRRLGRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFRGS---FD--RPNLALKVVEKG-EPSDQLA-F 221 (590)
T ss_pred cCHhHHHHHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEec---CC--Cchhhhhhhhcc-cHHHHHH-H
Confidence 777655544 4455 889999999999988887766665 33333221 11 222222221111 1222222 2
Q ss_pred HHH-HhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccE
Q 011052 81 LIT-VYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL 158 (494)
Q Consensus 81 ll~-~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~ 158 (494)
+.+ .....+..||||.|++.|+.+++.|.. ++.+..+|++|+.++|+.+.++|..++.+|+|||.++.+|||-|+|++
T Consensus 222 i~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRf 301 (590)
T COG0514 222 LATVLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRF 301 (590)
T ss_pred HHhhccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceE
Confidence 221 123456789999999999999999996 799999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHH
Q 011052 159 IIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERD 205 (494)
Q Consensus 159 VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~ 205 (494)
|||||+|.+++.|.|-+|||||.|....|++|+.+.|....+.+...
T Consensus 302 ViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~ 348 (590)
T COG0514 302 VIHYDLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQ 348 (590)
T ss_pred EEEecCCCCHHHHHHHHhhccCCCCcceEEEeeccccHHHHHHHHHh
Confidence 99999999999999999999999999999999999998777666443
No 53
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.87 E-value=1.3e-21 Score=210.83 Aligned_cols=169 Identities=18% Similarity=0.169 Sum_probs=136.5
Q ss_pred cEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHHHHHHh-ccCCcEEEEcCChhh
Q 011052 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVY-AKGGKTIVFTQTKRD 100 (494)
Q Consensus 22 q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~-~~~~~~IVF~~t~~~ 100 (494)
.+.-||||.+....++.+.|..++..|.... .. .....+.++.+...+|...|.+++... ..+.++||||+|++.
T Consensus 410 kl~GmTGTa~~~~~El~~~y~l~vv~IPt~k---p~-~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~ 485 (656)
T PRK12898 410 RLAGMTGTAREVAGELWSVYGLPVVRIPTNR---PS-QRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAA 485 (656)
T ss_pred HHhcccCcChHHHHHHHHHHCCCeEEeCCCC---Cc-cceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHH
Confidence 5678999999998899999988876665421 11 222334455566678888888887664 235789999999999
Q ss_pred HHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCC---ccc-----EEEecCCCCChhhH
Q 011052 101 ADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP---NVD-----LIIHYELPNDPETF 171 (494)
Q Consensus 101 ~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip---~v~-----~VI~~~~P~~~~~y 171 (494)
++.+++.|.+ ++++.+|||++.+.+ ..+..|+.+...|+||||+++||+||+ +|. |||+|++|.+...|
T Consensus 486 se~L~~~L~~~gi~~~~Lhg~~~~rE--~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y 563 (656)
T PRK12898 486 SERLSALLREAGLPHQVLNAKQDAEE--AAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARID 563 (656)
T ss_pred HHHHHHHHHHCCCCEEEeeCCcHHHH--HHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHH
Confidence 9999999986 899999999865544 445555555567999999999999999 776 99999999999999
Q ss_pred HHHhcccCCCCCCceEEEecChhhH
Q 011052 172 VHRSGRTGRAGKEGTAILMFTSSQR 196 (494)
Q Consensus 172 ~qr~GR~gR~G~~g~~i~l~~~~e~ 196 (494)
+||+|||||.|.+|.+++|++..|.
T Consensus 564 ~hr~GRTGRqG~~G~s~~~is~eD~ 588 (656)
T PRK12898 564 RQLAGRCGRQGDPGSYEAILSLEDD 588 (656)
T ss_pred HHhcccccCCCCCeEEEEEechhHH
Confidence 9999999999999999999998663
No 54
>PRK02362 ski2-like helicase; Provisional
Probab=99.86 E-value=8.8e-21 Score=212.51 Aligned_cols=190 Identities=25% Similarity=0.381 Sum_probs=133.8
Q ss_pred CCCChHHHHHHHHHhC---CCCCcEEEEeecCChHHHHHHHHHcCC--------CcEEEeccccccccccceEEEEEEcC
Q 011052 2 LAVGFEEDVELILENL---PPKRQSMLFSATMPSWVKKLSRKYLDN--------PLNIDLVGNQDEKLAEGIKLYAISTT 70 (494)
Q Consensus 2 L~~GF~~~i~~Il~~l---p~~~q~ll~SATlp~~i~~l~~~~l~~--------p~~i~~~~~~~~~~~~~i~~~~~~~~ 70 (494)
++.++-..++.++..+ +++.|++++|||+|+. .+++. ++.. |+.+...-...........+..+ .
T Consensus 150 ~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n~-~~la~-wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~--~ 225 (737)
T PRK02362 150 DSANRGPTLEVTLAKLRRLNPDLQVVALSATIGNA-DELAD-WLDAELVDSEWRPIDLREGVFYGGAIHFDDSQREV--E 225 (737)
T ss_pred CCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCCH-HHHHH-HhCCCcccCCCCCCCCeeeEecCCeeccccccccC--C
Confidence 4567777777776554 5789999999999863 34443 3331 11111000000000000001111 1
Q ss_pred cccHHHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhcc-------------------------------------Cc
Q 011052 71 ATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-------------------------------------IA 113 (494)
Q Consensus 71 ~~~k~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~~-------------------------------------~~ 113 (494)
...+...+..+++.+..++++||||+|++.|+.++..|... ..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~g 305 (737)
T PRK02362 226 VPSKDDTLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKG 305 (737)
T ss_pred CccchHHHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhC
Confidence 11223344445554556789999999999999988877531 25
Q ss_pred eeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEe----cC-----CCCChhhHHHHhcccCCCCCC
Q 011052 114 SEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH----YE-----LPNDPETFVHRSGRTGRAGKE 184 (494)
Q Consensus 114 ~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~----~~-----~P~~~~~y~qr~GR~gR~G~~ 184 (494)
+.++|++|++.+|..+++.|++|.++|||||+++++|+|+|.+++||+ || .|.+..+|+||+|||||.|..
T Consensus 306 va~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d 385 (737)
T PRK02362 306 AAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLD 385 (737)
T ss_pred EEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCC
Confidence 788999999999999999999999999999999999999999999997 76 689999999999999999854
Q ss_pred --ceEEEecChhh
Q 011052 185 --GTAILMFTSSQ 195 (494)
Q Consensus 185 --g~~i~l~~~~e 195 (494)
|.+++++...+
T Consensus 386 ~~G~~ii~~~~~~ 398 (737)
T PRK02362 386 PYGEAVLLAKSYD 398 (737)
T ss_pred CCceEEEEecCch
Confidence 99999987653
No 55
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.86 E-value=2.4e-22 Score=188.03 Aligned_cols=168 Identities=28% Similarity=0.568 Sum_probs=141.5
Q ss_pred ChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHHHHHH
Q 011052 5 GFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 84 (494)
Q Consensus 5 GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~ 84 (494)
..+.|+++|++..|.+.|+++||||++++|+.++++||.+|..|-+. +....+...++++|+.....+|...|.++|+.
T Consensus 202 DMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vD-dE~KLtLHGLqQ~YvkLke~eKNrkl~dLLd~ 280 (387)
T KOG0329|consen 202 DMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVD-DEAKLTLHGLQQYYVKLKENEKNRKLNDLLDV 280 (387)
T ss_pred HHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhcc-chhhhhhhhHHHHHHhhhhhhhhhhhhhhhhh
Confidence 46789999999999999999999999999999999999999988543 44555678899999999999999899999988
Q ss_pred hccCCcEEEEcCChhhHHHHHHHHhccCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEecCC
Q 011052 85 YAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYEL 164 (494)
Q Consensus 85 ~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~~~~ 164 (494)
+ .-.+++||+.+... | + | ..+ ||||++..||+||..|+.|+|||+
T Consensus 281 L-eFNQVvIFvKsv~R-------l-------------~----------f---~kr-~vat~lfgrgmdiervNi~~NYdm 325 (387)
T KOG0329|consen 281 L-EFNQVVIFVKSVQR-------L-------------S----------F---QKR-LVATDLFGRGMDIERVNIVFNYDM 325 (387)
T ss_pred h-hhcceeEeeehhhh-------h-------------h----------h---hhh-hHHhhhhccccCcccceeeeccCC
Confidence 7 34799999987654 1 0 2 112 899999999999999999999999
Q ss_pred CCChhhHHHHhcccCCCCCCceEEEecChhh-HHHHHHHHHHhCC
Q 011052 165 PNDPETFVHRSGRTGRAGKEGTAILMFTSSQ-RRTVRSLERDVGC 208 (494)
Q Consensus 165 P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e-~~~l~~le~~~~~ 208 (494)
|.+.++|+||++||||.|.+|.+|+|++..+ ...+..++.....
T Consensus 326 p~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v 370 (387)
T KOG0329|consen 326 PEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEV 370 (387)
T ss_pred CCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhc
Confidence 9999999999999999999999999988654 4455555544433
No 56
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.85 E-value=2.1e-20 Score=207.14 Aligned_cols=188 Identities=19% Similarity=0.292 Sum_probs=134.5
Q ss_pred HHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHHHHHHhccCCc
Q 011052 11 ELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGK 90 (494)
Q Consensus 11 ~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~ 90 (494)
...+...+..+|+++||||+.+....+......+...++... . ....+...++ ....+..++..+......+.+
T Consensus 400 r~~l~~~~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p--~--~r~~i~~~~~--~~~~~~~~~~~i~~~~~~g~q 473 (681)
T PRK10917 400 RLALREKGENPHVLVMTATPIPRTLAMTAYGDLDVSVIDELP--P--GRKPITTVVI--PDSRRDEVYERIREEIAKGRQ 473 (681)
T ss_pred HHHHHhcCCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecCC--C--CCCCcEEEEe--CcccHHHHHHHHHHHHHcCCc
Confidence 344555566789999999976655444321111222232111 1 1122444333 233344444555555566789
Q ss_pred EEEEcCChh--------hHHHHHHHHhcc---CceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEE
Q 011052 91 TIVFTQTKR--------DADEVSLALTSI---IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (494)
Q Consensus 91 ~IVF~~t~~--------~~~~l~~~L~~~---~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~V 159 (494)
++|||++.+ .++.+++.|.+. +.+..+||+|++.+|++++++|++|+++|||||+++++|+|+|++++|
T Consensus 474 ~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~V 553 (681)
T PRK10917 474 AYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVM 553 (681)
T ss_pred EEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEE
Confidence 999999654 456677777753 579999999999999999999999999999999999999999999999
Q ss_pred EecCCCC-ChhhHHHHhcccCCCCCCceEEEecC-h---hhHHHHHHHHH
Q 011052 160 IHYELPN-DPETFVHRSGRTGRAGKEGTAILMFT-S---SQRRTVRSLER 204 (494)
Q Consensus 160 I~~~~P~-~~~~y~qr~GR~gR~G~~g~~i~l~~-~---~e~~~l~~le~ 204 (494)
|+++.|. ...+|+||+||+||.|..|.|++++. + .....++.+++
T Consensus 554 Ii~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~~~~~~~~~rl~~~~~ 603 (681)
T PRK10917 554 VIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKDPLSETARERLKIMRE 603 (681)
T ss_pred EEeCCCCCCHHHHHHHhhcccCCCCceEEEEEECCCCChhHHHHHHHHHH
Confidence 9999997 57889999999999999999999985 3 23344554443
No 57
>PRK00254 ski2-like helicase; Provisional
Probab=99.85 E-value=3.6e-20 Score=207.13 Aligned_cols=224 Identities=22% Similarity=0.294 Sum_probs=146.8
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccce-EEEEEEcCcc--cH--H
Q 011052 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGI-KLYAISTTAT--SK--R 75 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i-~~~~~~~~~~--~k--~ 75 (494)
|.+.++...++.|+..++...|++++|||+++ ..+++. ++..+.... . .........+ .+.++..... .+ .
T Consensus 150 l~~~~rg~~le~il~~l~~~~qiI~lSATl~n-~~~la~-wl~~~~~~~-~-~rpv~l~~~~~~~~~~~~~~~~~~~~~~ 225 (720)
T PRK00254 150 IGSYDRGATLEMILTHMLGRAQILGLSATVGN-AEELAE-WLNAELVVS-D-WRPVKLRKGVFYQGFLFWEDGKIERFPN 225 (720)
T ss_pred cCCccchHHHHHHHHhcCcCCcEEEEEccCCC-HHHHHH-HhCCccccC-C-CCCCcceeeEecCCeeeccCcchhcchH
Confidence 34567888999999999999999999999986 355654 554332111 0 0110110011 1111111111 11 1
Q ss_pred HHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc----------------------------------cCceeeecCCC
Q 011052 76 TILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS----------------------------------IIASEALHGDI 121 (494)
Q Consensus 76 ~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~----------------------------------~~~~~~lhg~~ 121 (494)
.....+.+....+.++||||+|++.|+.++..|.. ...+.++|++|
T Consensus 226 ~~~~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl 305 (720)
T PRK00254 226 SWESLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGL 305 (720)
T ss_pred HHHHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCC
Confidence 11122223333568999999999999887766531 12488999999
Q ss_pred CHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEe-------cCCCC-ChhhHHHHhcccCCCC--CCceEEEec
Q 011052 122 SQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH-------YELPN-DPETFVHRSGRTGRAG--KEGTAILMF 191 (494)
Q Consensus 122 ~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~-------~~~P~-~~~~y~qr~GR~gR~G--~~g~~i~l~ 191 (494)
++.+|..+++.|++|.++|||||+++++|+|+|.+++||. ++.|. +..+|+||+|||||.| ..|.+++++
T Consensus 306 ~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~ 385 (720)
T PRK00254 306 GRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVA 385 (720)
T ss_pred CHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEe
Confidence 9999999999999999999999999999999999999994 55554 5678999999999976 679999998
Q ss_pred ChhhHHHHHHHHHHhCCCceec-CCCCHHHHHHHHHHHHH
Q 011052 192 TSSQRRTVRSLERDVGCKFEFV-SPPVVEDVLESSAEQVV 230 (494)
Q Consensus 192 ~~~e~~~l~~le~~~~~~~~~~-~~p~~~~i~~~~~~~~~ 230 (494)
...+.. +.+++++..+++.+ .....++.+..++...+
T Consensus 386 ~~~~~~--~~~~~~~~~~pe~l~s~l~~es~l~~~ll~~i 423 (720)
T PRK00254 386 TTEEPS--KLMERYIFGKPEKLFSMLSNESAFRSQVLALI 423 (720)
T ss_pred cCcchH--HHHHHHHhCCchhhhccCCchHHHHHHHHHHH
Confidence 765422 22445544444332 22233445554444333
No 58
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.85 E-value=1.6e-20 Score=211.12 Aligned_cols=163 Identities=17% Similarity=0.243 Sum_probs=140.2
Q ss_pred cHHHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHh-c-cCceeeecCCCCHHHHHHHHccccCC--CeeEEEechhhh
Q 011052 73 SKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-S-IIASEALHGDISQHQRERTLNGFRQG--KFTVLVATDVAA 148 (494)
Q Consensus 73 ~k~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~-~-~~~~~~lhg~~~~~~R~~~l~~Fr~g--~~~iLVaT~~~~ 148 (494)
.|.+.|.++++.. ...|+||||++++.++.+++.|. . ++.+..+||+|++.+|+++++.|+++ .++|||||++++
T Consensus 479 ~Ki~~L~~~L~~~-~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgs 557 (956)
T PRK04914 479 PRVEWLIDFLKSH-RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGS 557 (956)
T ss_pred HHHHHHHHHHHhc-CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhc
Confidence 4666677777665 46899999999999999999995 3 78999999999999999999999974 699999999999
Q ss_pred ccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCC--CceecCCCCHHHHHHHHH
Q 011052 149 RGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGC--KFEFVSPPVVEDVLESSA 226 (494)
Q Consensus 149 ~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~--~~~~~~~p~~~~i~~~~~ 226 (494)
+|+|++.+++|||||+|++++.|+||+||++|.|+++.+.+++...+......|.+.+.. .+-...+|+.+++.+...
T Consensus 558 eGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l~ife~~~~~~~~v~~~~~ 637 (956)
T PRK04914 558 EGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEGLNAFEHTCPTGRALYDEFG 637 (956)
T ss_pred cCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhhhcCceeccCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999988777766665566666666544 666788899999999888
Q ss_pred HHHHHHHccC
Q 011052 227 EQVVATLNGV 236 (494)
Q Consensus 227 ~~~~~~l~~~ 236 (494)
..+...+...
T Consensus 638 ~~l~~~l~~~ 647 (956)
T PRK04914 638 DELIPYLASP 647 (956)
T ss_pred HHHHHHHhCC
Confidence 8887777554
No 59
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.84 E-value=6.8e-20 Score=201.65 Aligned_cols=166 Identities=22% Similarity=0.282 Sum_probs=122.9
Q ss_pred CCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHHHHHHhccCCcEEEEcCCh-
Q 011052 20 KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTK- 98 (494)
Q Consensus 20 ~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IVF~~t~- 98 (494)
.+|+++||||+.+....+.....-+...++... . ....+..+.+ ....+..++..+.+....+.+++|||++.
T Consensus 386 ~~~~l~~SATp~prtl~l~~~~~l~~~~i~~~p--~--~r~~i~~~~~--~~~~~~~~~~~i~~~l~~g~q~~v~~~~i~ 459 (630)
T TIGR00643 386 TPHVLVMSATPIPRTLALTVYGDLDTSIIDELP--P--GRKPITTVLI--KHDEKDIVYEFIEEEIAKGRQAYVVYPLIE 459 (630)
T ss_pred CCCEEEEeCCCCcHHHHHHhcCCcceeeeccCC--C--CCCceEEEEe--CcchHHHHHHHHHHHHHhCCcEEEEEcccc
Confidence 689999999976554433221111112222111 1 1122333332 22334445555555555678999999976
Q ss_pred -------hhHHHHHHHHhc---cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEecCCCC-C
Q 011052 99 -------RDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPN-D 167 (494)
Q Consensus 99 -------~~~~~l~~~L~~---~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~~~~P~-~ 167 (494)
..++.+++.|.+ .+.+..+||+|++.+|.+++++|++|+.+|||||+++++|||+|++++||+++.|. .
T Consensus 460 ~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi~~~~r~g 539 (630)
T TIGR00643 460 ESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVIEDAERFG 539 (630)
T ss_pred ccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEEeCCCcCC
Confidence 346677777764 46799999999999999999999999999999999999999999999999999987 6
Q ss_pred hhhHHHHhcccCCCCCCceEEEec
Q 011052 168 PETFVHRSGRTGRAGKEGTAILMF 191 (494)
Q Consensus 168 ~~~y~qr~GR~gR~G~~g~~i~l~ 191 (494)
..+|+||+||+||.|++|.|++++
T Consensus 540 ls~lhQ~~GRvGR~g~~g~~il~~ 563 (630)
T TIGR00643 540 LSQLHQLRGRVGRGDHQSYCLLVY 563 (630)
T ss_pred HHHHHHHhhhcccCCCCcEEEEEE
Confidence 788999999999999999999998
No 60
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.83 E-value=2.5e-20 Score=185.53 Aligned_cols=190 Identities=31% Similarity=0.483 Sum_probs=150.4
Q ss_pred CCCCChHHHHHHHHHhCCC------CCcEEEEeecCC-hHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcc-
Q 011052 1 MLAVGFEEDVELILENLPP------KRQSMLFSATMP-SWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTAT- 72 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~lp~------~~q~ll~SATlp-~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~- 72 (494)
+|..||-+-|..+..++|. ..|.+++|||+. -+++++.++.|.-|..|++.+ +..+++.+.|+...+.+.
T Consensus 375 lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkg--eD~vpetvHhvv~lv~p~~ 452 (725)
T KOG0349|consen 375 LLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKG--EDLVPETVHHVVKLVCPSV 452 (725)
T ss_pred hhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEeccc--ccccchhhccceeecCCcc
Confidence 4667888999988888873 479999999986 367788888999999988763 333444444443322211
Q ss_pred c-HHHHH-------------------------H------------HHHHHhccCCcEEEEcCChhhHHHHHHHHhc----
Q 011052 73 S-KRTIL-------------------------S------------DLITVYAKGGKTIVFTQTKRDADEVSLALTS---- 110 (494)
Q Consensus 73 ~-k~~~L-------------------------~------------~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~---- 110 (494)
+ ...-| . ..++.+ .-.++||||.|+.+|+.+..++.+
T Consensus 453 d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h-~mdkaiifcrtk~dcDnLer~~~qkgg~ 531 (725)
T KOG0349|consen 453 DGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRH-AMDKAIIFCRTKQDCDNLERMMNQKGGK 531 (725)
T ss_pred CccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhh-ccCceEEEEeccccchHHHHHHHHcCCc
Confidence 0 00001 0 111111 236899999999999999999974
Q ss_pred cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEe
Q 011052 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILM 190 (494)
Q Consensus 111 ~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l 190 (494)
.+.|+++||+..+.+|.+.++.|++..++.|||||+++|||||..+.++||.-+|.+...|+||+||+||+.+-|.+|.+
T Consensus 532 ~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgraermglaisl 611 (725)
T KOG0349|consen 532 HYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAERMGLAISL 611 (725)
T ss_pred cceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhhhcceeEEE
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999988988887
Q ss_pred cCh
Q 011052 191 FTS 193 (494)
Q Consensus 191 ~~~ 193 (494)
+..
T Consensus 612 vat 614 (725)
T KOG0349|consen 612 VAT 614 (725)
T ss_pred eec
Confidence 643
No 61
>PRK01172 ski2-like helicase; Provisional
Probab=99.81 E-value=9.1e-19 Score=194.75 Aligned_cols=188 Identities=23% Similarity=0.316 Sum_probs=125.8
Q ss_pred CCCChHHHHHHHHH---hCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceE---EEEEEcCcccHH
Q 011052 2 LAVGFEEDVELILE---NLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIK---LYAISTTATSKR 75 (494)
Q Consensus 2 L~~GF~~~i~~Il~---~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~---~~~~~~~~~~k~ 75 (494)
.|.++...++.++. .++++.|+|++|||+++ ..++++ ++..+. +... .....+...+. ..+.........
T Consensus 148 ~d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n-~~~la~-wl~~~~-~~~~-~r~vpl~~~i~~~~~~~~~~~~~~~~ 223 (674)
T PRK01172 148 GDEDRGPTLETVLSSARYVNPDARILALSATVSN-ANELAQ-WLNASL-IKSN-FRPVPLKLGILYRKRLILDGYERSQV 223 (674)
T ss_pred cCCCccHHHHHHHHHHHhcCcCCcEEEEeCccCC-HHHHHH-HhCCCc-cCCC-CCCCCeEEEEEecCeeeecccccccc
Confidence 34556556666654 45678999999999986 355554 443222 1100 00000000011 011111111111
Q ss_pred HHHHHHHHH-hccCCcEEEEcCChhhHHHHHHHHhcc--------------------------CceeeecCCCCHHHHHH
Q 011052 76 TILSDLITV-YAKGGKTIVFTQTKRDADEVSLALTSI--------------------------IASEALHGDISQHQRER 128 (494)
Q Consensus 76 ~~L~~ll~~-~~~~~~~IVF~~t~~~~~~l~~~L~~~--------------------------~~~~~lhg~~~~~~R~~ 128 (494)
. +..++.. ..+++++||||+|++.|+.++..|... ..+..+|++|++.+|..
T Consensus 224 ~-~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ 302 (674)
T PRK01172 224 D-INSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRF 302 (674)
T ss_pred c-HHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHH
Confidence 1 2233333 345689999999999999999888532 13678999999999999
Q ss_pred HHccccCCCeeEEEechhhhccCCCCcccEEEecC---------CCCChhhHHHHhcccCCCC--CCceEEEecChhh
Q 011052 129 TLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYE---------LPNDPETFVHRSGRTGRAG--KEGTAILMFTSSQ 195 (494)
Q Consensus 129 ~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~~~---------~P~~~~~y~qr~GR~gR~G--~~g~~i~l~~~~e 195 (494)
+++.|++|.++|||||+++++|+|+|...+|| ++ .|.++.+|.||+|||||.| ..|.+++++...+
T Consensus 303 ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~ 379 (674)
T PRK01172 303 IEEMFRNRYIKVIVATPTLAAGVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPA 379 (674)
T ss_pred HHHHHHcCCCeEEEecchhhccCCCcceEEEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcc
Confidence 99999999999999999999999999976555 33 3568889999999999998 4677888765443
No 62
>PRK09401 reverse gyrase; Reviewed
Probab=99.80 E-value=1.9e-19 Score=207.47 Aligned_cols=163 Identities=24% Similarity=0.307 Sum_probs=133.0
Q ss_pred CChH-HHHHHHHHhCCC------------------------CCcEEEEeecCChH-HHHHHHHHcCCCcEEEeccccccc
Q 011052 4 VGFE-EDVELILENLPP------------------------KRQSMLFSATMPSW-VKKLSRKYLDNPLNIDLVGNQDEK 57 (494)
Q Consensus 4 ~GF~-~~i~~Il~~lp~------------------------~~q~ll~SATlp~~-i~~l~~~~l~~p~~i~~~~~~~~~ 57 (494)
|||. ++|+.|+..+|. +.|+++||||+++. +.. .+++++..+++.. ...
T Consensus 227 lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v~~--~~~ 301 (1176)
T PRK09401 227 LGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFEVGS--PVF 301 (1176)
T ss_pred CCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceEEecC--ccc
Confidence 8995 789999988875 78999999999874 432 2344555555432 233
Q ss_pred cccceEEEEEEcCcccHHHHHHHHHHHhccCCcEEEEcCChhh---HHHHHHHHhc-cCceeeecCCCCHHHHHHHHccc
Q 011052 58 LAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRD---ADEVSLALTS-IIASEALHGDISQHQRERTLNGF 133 (494)
Q Consensus 58 ~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IVF~~t~~~---~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~F 133 (494)
...++.+.|+.+. ++.+.|..+++.+ +.++||||+|++. |+.+++.|.. ++.+..+||+| .+.+++|
T Consensus 302 ~~rnI~~~yi~~~--~k~~~L~~ll~~l--~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F 372 (1176)
T PRK09401 302 YLRNIVDSYIVDE--DSVEKLVELVKRL--GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKF 372 (1176)
T ss_pred ccCCceEEEEEcc--cHHHHHHHHHHhc--CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHH
Confidence 4567888887665 6777788888765 3589999999888 9999999986 79999999999 3346999
Q ss_pred cCCCeeEEEe----chhhhccCCCCc-ccEEEecCCCC------ChhhHHHHhcccCC
Q 011052 134 RQGKFTVLVA----TDVAARGLDIPN-VDLIIHYELPN------DPETFVHRSGRTGR 180 (494)
Q Consensus 134 r~g~~~iLVa----T~~~~~GiDip~-v~~VI~~~~P~------~~~~y~qr~GR~gR 180 (494)
++|+++|||| ||+++||||+|+ |++||||++|. ..+.|.||+||+-.
T Consensus 373 ~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 373 EEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred HCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHh
Confidence 9999999999 699999999999 89999999998 78899999999863
No 63
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.80 E-value=1.6e-18 Score=190.72 Aligned_cols=169 Identities=18% Similarity=0.192 Sum_probs=131.8
Q ss_pred cEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHHHHHH-hccCCcEEEEcCChhh
Q 011052 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV-YAKGGKTIVFTQTKRD 100 (494)
Q Consensus 22 q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~-~~~~~~~IVF~~t~~~ 100 (494)
.+..||.|.-.+-.++.+.|-- .++.+ +...........- .+.+...+|...|...+.. +....++||||+|++.
T Consensus 365 kl~GmTGTa~t~~~e~~~~Y~l--~v~~I-Pt~kp~~r~d~~~-~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~ 440 (790)
T PRK09200 365 KLSGMTGTAKTEEKEFFEVYNM--EVVQI-PTNRPIIRIDYPD-KVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQ 440 (790)
T ss_pred HHhccCCCChHHHHHHHHHhCC--cEEEC-CCCCCcccccCCC-eEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHH
Confidence 4667888886666666665532 22322 2222211211211 2234556788877776654 3467899999999999
Q ss_pred HHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCC---Cccc-----EEEecCCCCChhhH
Q 011052 101 ADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDI---PNVD-----LIIHYELPNDPETF 171 (494)
Q Consensus 101 ~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDi---p~v~-----~VI~~~~P~~~~~y 171 (494)
++.++..|.+ ++++.++|+++.+.++..+.++++.+ .|+||||+|+||+|| |+|. |||+|++|.+.+.|
T Consensus 441 se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y 518 (790)
T PRK09200 441 SETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVD 518 (790)
T ss_pred HHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHH
Confidence 9999999986 89999999999999998888888866 699999999999999 7998 99999999999999
Q ss_pred HHHhcccCCCCCCceEEEecChhhH
Q 011052 172 VHRSGRTGRAGKEGTAILMFTSSQR 196 (494)
Q Consensus 172 ~qr~GR~gR~G~~g~~i~l~~~~e~ 196 (494)
+||+|||||.|.+|.+++|++..|.
T Consensus 519 ~qr~GRtGR~G~~G~s~~~is~eD~ 543 (790)
T PRK09200 519 LQLRGRSGRQGDPGSSQFFISLEDD 543 (790)
T ss_pred HHhhccccCCCCCeeEEEEEcchHH
Confidence 9999999999999999999987653
No 64
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.80 E-value=4e-18 Score=187.72 Aligned_cols=139 Identities=27% Similarity=0.417 Sum_probs=120.1
Q ss_pred HHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCC
Q 011052 76 TILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP 154 (494)
Q Consensus 76 ~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip 154 (494)
.++..+......+.++||||+|++.++.+++.|.. ++.+..+|+++++.+|..+++.|+.|++.|||||+++++|+|+|
T Consensus 434 ~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp 513 (652)
T PRK05298 434 DLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIP 513 (652)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCcccc
Confidence 34444444445678999999999999999999986 78999999999999999999999999999999999999999999
Q ss_pred cccEEEecCC-----CCChhhHHHHhcccCCCCCCceEEEecCh---------hhHHHHHHHHHHhCCCceecCC
Q 011052 155 NVDLIIHYEL-----PNDPETFVHRSGRTGRAGKEGTAILMFTS---------SQRRTVRSLERDVGCKFEFVSP 215 (494)
Q Consensus 155 ~v~~VI~~~~-----P~~~~~y~qr~GR~gR~G~~g~~i~l~~~---------~e~~~l~~le~~~~~~~~~~~~ 215 (494)
++++||++|. |.+.++|+||+|||||. ..|.+++|++. .|...++.++..++.+...++.
T Consensus 514 ~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 587 (652)
T PRK05298 514 EVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITPK 587 (652)
T ss_pred CCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCCh
Confidence 9999998874 78999999999999996 68999999984 5666778888887777665543
No 65
>PRK14701 reverse gyrase; Provisional
Probab=99.78 E-value=1e-18 Score=205.70 Aligned_cols=187 Identities=18% Similarity=0.246 Sum_probs=143.6
Q ss_pred CChHHHHHH----HHH----------------------hCCCCCc-EEEEeecCChHHHHHHHHHcCCCcEEEecccccc
Q 011052 4 VGFEEDVEL----ILE----------------------NLPPKRQ-SMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDE 56 (494)
Q Consensus 4 ~GF~~~i~~----Il~----------------------~lp~~~q-~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~ 56 (494)
|||.+++.+ |++ .+|+.+| ++++|||+++.-. ...+++++..+.+.. ..
T Consensus 226 lGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~--~~~l~~~~l~f~v~~--~~ 301 (1638)
T PRK14701 226 LGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGD--RVKLYRELLGFEVGS--GR 301 (1638)
T ss_pred CCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhH--HHHHhhcCeEEEecC--CC
Confidence 799999975 543 3456667 5679999986311 123446666666532 23
Q ss_pred ccccceEEEEEEcCcccHHHHHHHHHHHhccCCcEEEEcCChhh---HHHHHHHHhc-cCceeeecCCCCHHHHHHHHcc
Q 011052 57 KLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRD---ADEVSLALTS-IIASEALHGDISQHQRERTLNG 132 (494)
Q Consensus 57 ~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IVF~~t~~~---~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~ 132 (494)
....++.+.|+.+....+ ..|..+++.. +..+||||+|++. |+.+++.|.. ++.+..+|++ |..++++
T Consensus 302 ~~lr~i~~~yi~~~~~~k-~~L~~ll~~~--g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~ 373 (1638)
T PRK14701 302 SALRNIVDVYLNPEKIIK-EHVRELLKKL--GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDL 373 (1638)
T ss_pred CCCCCcEEEEEECCHHHH-HHHHHHHHhC--CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHH
Confidence 455678888887655545 4566777665 4689999999886 4899999986 8999999995 8899999
Q ss_pred ccCCCeeEEEec----hhhhccCCCCc-ccEEEecCCCC---ChhhHHHHh-------------cccCCCCCCceEEEec
Q 011052 133 FRQGKFTVLVAT----DVAARGLDIPN-VDLIIHYELPN---DPETFVHRS-------------GRTGRAGKEGTAILMF 191 (494)
Q Consensus 133 Fr~g~~~iLVaT----~~~~~GiDip~-v~~VI~~~~P~---~~~~y~qr~-------------GR~gR~G~~g~~i~l~ 191 (494)
|++|+++||||| ++++||||+|+ |++|||||+|. +.+.|.|.. ||++|.|....+++.+
T Consensus 374 F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~ 453 (1638)
T PRK14701 374 FEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEGVLDV 453 (1638)
T ss_pred HHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcchhHHHh
Confidence 999999999999 59999999999 99999999999 888776655 9999999888887766
Q ss_pred ChhhHHHHHHH
Q 011052 192 TSSQRRTVRSL 202 (494)
Q Consensus 192 ~~~e~~~l~~l 202 (494)
...+...++.+
T Consensus 454 ~~~~~~~~~~~ 464 (1638)
T PRK14701 454 FPEDVEFLRSI 464 (1638)
T ss_pred HHHHHHHHHHH
Confidence 66666555544
No 66
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.77 E-value=7.7e-18 Score=173.35 Aligned_cols=158 Identities=20% Similarity=0.255 Sum_probs=111.4
Q ss_pred HHHHHhCCCCCcEEEEeecCChHHHHHHHHH--cCCCcEEEeccc--cc---------------cccccceEEEEEEcCc
Q 011052 11 ELILENLPPKRQSMLFSATMPSWVKKLSRKY--LDNPLNIDLVGN--QD---------------EKLAEGIKLYAISTTA 71 (494)
Q Consensus 11 ~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~--l~~p~~i~~~~~--~~---------------~~~~~~i~~~~~~~~~ 71 (494)
..+++..+...+++++|||+|+++....... +..+..+ +.+. .. ..+...+++.+.. ..
T Consensus 172 ~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~-v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~ 249 (357)
T TIGR03158 172 MQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAP-IDGEKYQFPDNPELEADNKTQSFRPVLPPVELELIP-AP 249 (357)
T ss_pred HHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeee-ecCcccccCCChhhhccccccccceeccceEEEEEe-CC
Confidence 3444444446899999999999888777654 3433221 1111 00 0011345555544 33
Q ss_pred ccHHHHHHHHHHHh------ccCCcEEEEcCChhhHHHHHHHHhc---cCceeeecCCCCHHHHHHHHccccCCCeeEEE
Q 011052 72 TSKRTILSDLITVY------AKGGKTIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLV 142 (494)
Q Consensus 72 ~~k~~~L~~ll~~~------~~~~~~IVF~~t~~~~~~l~~~L~~---~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLV 142 (494)
..|.+.+..+++.. .++.++||||+|++.|+.+++.|++ .+.+..+||.+++.+|+++. +..|||
T Consensus 250 ~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~------~~~iLV 323 (357)
T TIGR03158 250 DFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM------QFDILL 323 (357)
T ss_pred chhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc------cCCEEE
Confidence 34444444433322 2457999999999999999999985 35788999999999998664 678999
Q ss_pred echhhhccCCCCcccEEEecCCCCChhhHHHHhcccC
Q 011052 143 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179 (494)
Q Consensus 143 aT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~g 179 (494)
||+++++|||+|.+ +|| ++ |.+.++|+||+||||
T Consensus 324 aTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 324 GTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred EecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 99999999999987 566 45 899999999999987
No 67
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.77 E-value=4e-18 Score=196.76 Aligned_cols=150 Identities=23% Similarity=0.405 Sum_probs=115.3
Q ss_pred CChHHH-HHHHH----------------------HhCCCCCc--EEEEeec-CChHHHHHHHHHcCCCcEEEeccccccc
Q 011052 4 VGFEED-VELIL----------------------ENLPPKRQ--SMLFSAT-MPSWVKKLSRKYLDNPLNIDLVGNQDEK 57 (494)
Q Consensus 4 ~GF~~~-i~~Il----------------------~~lp~~~q--~ll~SAT-lp~~i~~l~~~~l~~p~~i~~~~~~~~~ 57 (494)
|||.++ |+.|+ +.+|+++| +++|||| +|..+.. .+++++..+++.. ...
T Consensus 225 lGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r~ll~~~v~~--~~~ 299 (1171)
T TIGR01054 225 LGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFRELLGFEVGG--GSD 299 (1171)
T ss_pred cCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHcccccceEecC--ccc
Confidence 899875 66654 34566666 5678999 6766543 3456666666532 233
Q ss_pred cccceEEEEEEcCcccHHHHHHHHHHHhccCCcEEEEcCCh---hhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccc
Q 011052 58 LAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTK---RDADEVSLALTS-IIASEALHGDISQHQRERTLNGF 133 (494)
Q Consensus 58 ~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IVF~~t~---~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~F 133 (494)
...++.+.++.+.. +.+.|.++++.+ +.++||||+|+ +.|+++++.|.+ ++.+..+||+|++ .++++|
T Consensus 300 ~~r~I~~~~~~~~~--~~~~L~~ll~~l--~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~----~~l~~F 371 (1171)
T TIGR01054 300 TLRNVVDVYVEDED--LKETLLEIVKKL--GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK----EDYEKF 371 (1171)
T ss_pred cccceEEEEEeccc--HHHHHHHHHHHc--CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH----HHHHHH
Confidence 45678888775543 345566777665 36899999999 999999999986 7999999999973 689999
Q ss_pred cCCCeeEEEe----chhhhccCCCCc-ccEEEecCCCC
Q 011052 134 RQGKFTVLVA----TDVAARGLDIPN-VDLIIHYELPN 166 (494)
Q Consensus 134 r~g~~~iLVa----T~~~~~GiDip~-v~~VI~~~~P~ 166 (494)
++|+++|||| ||+++||||+|+ |++|||||+|.
T Consensus 372 r~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 372 AEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred HcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 9999999999 599999999999 89999999873
No 68
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.77 E-value=6.5e-18 Score=188.69 Aligned_cols=194 Identities=21% Similarity=0.324 Sum_probs=154.0
Q ss_pred hHHHHHH---HHHhCCCCCcEEEEeecCChHHHHHHHHHcC--CCcEEEeccccccccccceEEEEEEcCcccHHHHHHH
Q 011052 6 FEEDVEL---ILENLPPKRQSMLFSATMPSWVKKLSRKYLD--NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (494)
Q Consensus 6 F~~~i~~---Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~--~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ 80 (494)
|+++-.+ ++...| ...+|.++||....+..-+-..|+ +|..+.- . ...+++...............+..
T Consensus 404 FRp~Yk~l~~l~~~~~-~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~---s--fnR~NL~yeV~~k~~~~~~~~~~~ 477 (941)
T KOG0351|consen 404 FRPSYKRLGLLRIRFP-GVPFIALTATATERVREDVIRSLGLRNPELFKS---S--FNRPNLKYEVSPKTDKDALLDILE 477 (941)
T ss_pred ccHHHHHHHHHHhhCC-CCCeEEeehhccHHHHHHHHHHhCCCCcceecc---c--CCCCCceEEEEeccCccchHHHHH
Confidence 5555443 344444 489999999998888776655554 5553321 1 223444443333332334444445
Q ss_pred HHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEE
Q 011052 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (494)
Q Consensus 81 ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~V 159 (494)
.+..+.+....||||.++.+|++++..|.+ ++.+..+|++|+..+|..+-++|-.++++|+|||=++..|||.|+|+.|
T Consensus 478 ~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~V 557 (941)
T KOG0351|consen 478 ESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFV 557 (941)
T ss_pred HhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEE
Confidence 555566788999999999999999999997 6799999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHH
Q 011052 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERD 205 (494)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~ 205 (494)
|||.+|.+.+.|.|-+|||||.|....|++|+...+...++.+...
T Consensus 558 iH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~s 603 (941)
T KOG0351|consen 558 IHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLTS 603 (941)
T ss_pred EECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHHHc
Confidence 9999999999999999999999999999999999988877776543
No 69
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.77 E-value=3.7e-18 Score=185.35 Aligned_cols=168 Identities=20% Similarity=0.207 Sum_probs=131.3
Q ss_pred cEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEE-EEEcCcccHHHHH-HHHHHHhccCCcEEEEcCChh
Q 011052 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLY-AISTTATSKRTIL-SDLITVYAKGGKTIVFTQTKR 99 (494)
Q Consensus 22 q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~-~~~~~~~~k~~~L-~~ll~~~~~~~~~IVF~~t~~ 99 (494)
.+.-||.|...+..++.+.|--+ ++.+. .+++.....+- .+.....+|...+ ..+...+..+.++||||+|++
T Consensus 342 kl~GmTGTa~te~~E~~~iY~l~--vv~IP---tnkp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~ 416 (745)
T TIGR00963 342 KLSGMTGTAKTEEEEFEKIYNLE--VVVVP---TNRPVIRKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVE 416 (745)
T ss_pred hhhccCCCcHHHHHHHHHHhCCC--EEEeC---CCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHH
Confidence 45678888877777777666433 22222 11111111111 1122334566554 445556677889999999999
Q ss_pred hHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCc-------ccEEEecCCCCChhhH
Q 011052 100 DADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPN-------VDLIIHYELPNDPETF 171 (494)
Q Consensus 100 ~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~-------v~~VI~~~~P~~~~~y 171 (494)
.++.++..|.+ ++++..||++ +.+|+..+..|+.+...|+||||+|+||+||+. ..|||+++.|.+...|
T Consensus 417 ~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~ 494 (745)
T TIGR00963 417 KSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRID 494 (745)
T ss_pred HHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHH
Confidence 99999999986 8999999999 899999999999999999999999999999988 4599999999999999
Q ss_pred HHHhcccCCCCCCceEEEecChhhH
Q 011052 172 VHRSGRTGRAGKEGTAILMFTSSQR 196 (494)
Q Consensus 172 ~qr~GR~gR~G~~g~~i~l~~~~e~ 196 (494)
.|+.|||||.|.+|.+.+|++..|.
T Consensus 495 ~q~~GRtGRqG~~G~s~~~ls~eD~ 519 (745)
T TIGR00963 495 NQLRGRSGRQGDPGSSRFFLSLEDN 519 (745)
T ss_pred HHHhccccCCCCCcceEEEEeccHH
Confidence 9999999999999999999987764
No 70
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.76 E-value=1.1e-17 Score=183.22 Aligned_cols=128 Identities=25% Similarity=0.432 Sum_probs=112.6
Q ss_pred HHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCC
Q 011052 76 TILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP 154 (494)
Q Consensus 76 ~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip 154 (494)
.++..+......+.++||||+|++.++.+++.|.+ ++.+..+|+++++.+|.++++.|++|++.|||||+++++|+|+|
T Consensus 430 ~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP 509 (655)
T TIGR00631 430 DLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLP 509 (655)
T ss_pred HHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeC
Confidence 34444444445678999999999999999999986 78999999999999999999999999999999999999999999
Q ss_pred cccEEEecC-----CCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHH
Q 011052 155 NVDLIIHYE-----LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLER 204 (494)
Q Consensus 155 ~v~~VI~~~-----~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~ 204 (494)
++++||++| +|.+..+|+||+|||||. ..|.++++++..+..+.+.|+.
T Consensus 510 ~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~~ 563 (655)
T TIGR00631 510 EVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIEE 563 (655)
T ss_pred CCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHHH
Confidence 999999988 899999999999999998 6899999998776555555543
No 71
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.76 E-value=5.3e-18 Score=185.23 Aligned_cols=167 Identities=19% Similarity=0.194 Sum_probs=129.2
Q ss_pred cEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEE-EEEEcCcccHHHHHHHHHHH-hccCCcEEEEcCChh
Q 011052 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKL-YAISTTATSKRTILSDLITV-YAKGGKTIVFTQTKR 99 (494)
Q Consensus 22 q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~-~~~~~~~~~k~~~L~~ll~~-~~~~~~~IVF~~t~~ 99 (494)
.+.-||.|...+..++.+.|--+ ++.+ + .+++.....+ -.+.+....|...+...+.. +..+.++||||+|++
T Consensus 361 kl~GmTGTa~~~~~Ef~~iY~l~--v~~I-P--t~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~ 435 (762)
T TIGR03714 361 KLSGMTGTGKVAEKEFIETYSLS--VVKI-P--TNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVE 435 (762)
T ss_pred hhcccCCCChhHHHHHHHHhCCC--EEEc-C--CCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHH
Confidence 56678888766666676655322 2222 2 2222222221 12334455677766665543 456789999999999
Q ss_pred hHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCC---------cccEEEecCCCCChh
Q 011052 100 DADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP---------NVDLIIHYELPNDPE 169 (494)
Q Consensus 100 ~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip---------~v~~VI~~~~P~~~~ 169 (494)
.++.++..|.+ ++++.++|+++.+.++..+.++++.| .|+||||+|+||+||| ++.+|++|++|....
T Consensus 436 ~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~ri 513 (762)
T TIGR03714 436 MSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRV 513 (762)
T ss_pred HHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHH
Confidence 99999999986 89999999999999999888888877 6999999999999999 999999999999877
Q ss_pred hHHHHhcccCCCCCCceEEEecChhhH
Q 011052 170 TFVHRSGRTGRAGKEGTAILMFTSSQR 196 (494)
Q Consensus 170 ~y~qr~GR~gR~G~~g~~i~l~~~~e~ 196 (494)
. +||+|||||.|.+|.+++|++..|.
T Consensus 514 d-~qr~GRtGRqG~~G~s~~~is~eD~ 539 (762)
T TIGR03714 514 D-LQLRGRSGRQGDPGSSQFFVSLEDD 539 (762)
T ss_pred H-HHhhhcccCCCCceeEEEEEccchh
Confidence 7 9999999999999999999988664
No 72
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.75 E-value=1.1e-17 Score=146.05 Aligned_cols=127 Identities=46% Similarity=0.772 Sum_probs=112.3
Q ss_pred EEEEEEcCcccHHHHHHHHHHHhc-cCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeE
Q 011052 63 KLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTV 140 (494)
Q Consensus 63 ~~~~~~~~~~~k~~~L~~ll~~~~-~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~i 140 (494)
.+++...+ ..|.+.+..++.... .+.++||||++++.++.+++.|.+ ...+..+|++++..+|..+++.|+++...|
T Consensus 3 ~~~~~~~~-~~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~i 81 (131)
T cd00079 3 KQYVLPVE-DEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVV 81 (131)
T ss_pred EEEEEECC-HHHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcE
Confidence 34444443 367777777777653 468999999999999999999986 678999999999999999999999999999
Q ss_pred EEechhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEe
Q 011052 141 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILM 190 (494)
Q Consensus 141 LVaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l 190 (494)
|++|+++++|+|+|.+++||.+++|++...|+|++||++|.|..+.++++
T Consensus 82 li~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 82 LVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred EEEcChhhcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 99999999999999999999999999999999999999999988887764
No 73
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.75 E-value=2.5e-17 Score=176.86 Aligned_cols=112 Identities=18% Similarity=0.213 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHh-ccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEec-hhhhcc
Q 011052 74 KRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVAT-DVAARG 150 (494)
Q Consensus 74 k~~~L~~ll~~~-~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT-~~~~~G 150 (494)
+..++..++..+ ..+.++||||++++.++.+++.|.+ ++.+..+||+|++++|..+++.|++++..||||| +++++|
T Consensus 329 Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG 408 (501)
T PHA02558 329 RNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTG 408 (501)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccc
Confidence 334444444333 3457899999999999999999986 7899999999999999999999999999999998 899999
Q ss_pred CCCCcccEEEecCCCCChhhHHHHhcccCCCCCCc
Q 011052 151 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEG 185 (494)
Q Consensus 151 iDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g 185 (494)
+|+|++++||++.+|.+...|+||+||++|.+...
T Consensus 409 ~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K 443 (501)
T PHA02558 409 ISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSK 443 (501)
T ss_pred cccccccEEEEecCCcchhhhhhhhhccccCCCCC
Confidence 99999999999999999999999999999987544
No 74
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.75 E-value=6.9e-18 Score=172.43 Aligned_cols=122 Identities=33% Similarity=0.562 Sum_probs=106.0
Q ss_pred ccHHHHHHHHHHHh---ccCCcEEEEcCChhhHHHHHHHHhc-cCcee-ee--------cCCCCHHHHHHHHccccCCCe
Q 011052 72 TSKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS-IIASE-AL--------HGDISQHQRERTLNGFRQGKF 138 (494)
Q Consensus 72 ~~k~~~L~~ll~~~---~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~-~l--------hg~~~~~~R~~~l~~Fr~g~~ 138 (494)
..|++.+..+++.+ ..+.++|||++.+++|+.|.+.|.+ +..+. .+ ..||+|.+|.+++++|++|.+
T Consensus 347 HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~ 426 (542)
T COG1111 347 HPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEY 426 (542)
T ss_pred CccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCCc
Confidence 35777777777655 2457999999999999999999986 33331 22 257999999999999999999
Q ss_pred eEEEechhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChh
Q 011052 139 TVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSS 194 (494)
Q Consensus 139 ~iLVaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~ 194 (494)
+|||||+++++|||||++++||.|++-.++-.++||.|||||. +.|.+++|++..
T Consensus 427 nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~g 481 (542)
T COG1111 427 NVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEG 481 (542)
T ss_pred eEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecC
Confidence 9999999999999999999999999999999999999999998 799999998876
No 75
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.74 E-value=2.3e-16 Score=173.29 Aligned_cols=211 Identities=21% Similarity=0.315 Sum_probs=144.1
Q ss_pred HHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcc------cHHHHHHHHHH
Q 011052 10 VELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTAT------SKRTILSDLIT 83 (494)
Q Consensus 10 i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~------~k~~~L~~ll~ 83 (494)
++.+....+ +.|.|.+|||+.+. ..+++..........++..... ...++..+..... .....+..+.+
T Consensus 174 LeRL~~l~~-~~qRIGLSATV~~~-~~varfL~g~~~~~~Iv~~~~~---k~~~i~v~~p~~~~~~~~~~~~~~~~~i~~ 248 (814)
T COG1201 174 LERLRELAG-DFQRIGLSATVGPP-EEVAKFLVGFGDPCEIVDVSAA---KKLEIKVISPVEDLIYDEELWAALYERIAE 248 (814)
T ss_pred HHHHHhhCc-ccEEEeehhccCCH-HHHHHHhcCCCCceEEEEcccC---CcceEEEEecCCccccccchhHHHHHHHHH
Confidence 444445555 89999999999643 3444433333212222211111 2222222222221 11223333433
Q ss_pred HhccCCcEEEEcCChhhHHHHHHHHhcc--CceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEe
Q 011052 84 VYAKGGKTIVFTQTKRDADEVSLALTSI--IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH 161 (494)
Q Consensus 84 ~~~~~~~~IVF~~t~~~~~~l~~~L~~~--~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~ 161 (494)
.......+|||+||+..|+.++..|.+. ..+.++||.++.++|..+.++|++|+.+++|||..++-|||+.+|++|||
T Consensus 249 ~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq 328 (814)
T COG1201 249 LVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQ 328 (814)
T ss_pred HHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEE
Confidence 4444569999999999999999999974 68999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChhhHHHHhcccCC-CCCCceEEEecChhhH--HHHHHHHHHhCCCceecCCCCH-HHHHHHH
Q 011052 162 YELPNDPETFVHRSGRTGR-AGKEGTAILMFTSSQR--RTVRSLERDVGCKFEFVSPPVV-EDVLESS 225 (494)
Q Consensus 162 ~~~P~~~~~y~qr~GR~gR-~G~~g~~i~l~~~~e~--~~l~~le~~~~~~~~~~~~p~~-~~i~~~~ 225 (494)
|..|.++..++||+||+|+ .+.....+++....+. ...........-+++.+.+|.. -+++..+
T Consensus 329 ~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~r~dllE~~vi~~~a~~g~le~~~i~~~~LDVLaq~ 396 (814)
T COG1201 329 LGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAEDRDDLLECLVLADLALEGKLERIKIPKNPLDVLAQQ 396 (814)
T ss_pred eCCcHHHHHHhHhccccccccCCcccEEEEecCHHHHHHHHHHHHHHHhCCcccCCCCCcchhHHHHH
Confidence 9999999999999999996 5666777777766432 2233334445556665555533 3444443
No 76
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.73 E-value=5.9e-17 Score=179.08 Aligned_cols=236 Identities=19% Similarity=0.311 Sum_probs=178.4
Q ss_pred HHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCc-cc-HHHHHHHHHHHh--
Q 011052 10 VELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA-TS-KRTILSDLITVY-- 85 (494)
Q Consensus 10 i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~-~~-k~~~L~~ll~~~-- 85 (494)
+..++...+++.++|+||||+..+ ++. +|+.+..++.+.+. .-.++.+|..... .. -.+.+...+..+
T Consensus 185 lk~~~~~rr~DLKiIimSATld~~--rfs-~~f~~apvi~i~GR-----~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~ 256 (845)
T COG1643 185 LKDLLARRRDDLKLIIMSATLDAE--RFS-AYFGNAPVIEIEGR-----TYPVEIRYLPEAEADYILLDAIVAAVDIHLR 256 (845)
T ss_pred HHHHHhhcCCCceEEEEecccCHH--HHH-HHcCCCCEEEecCC-----ccceEEEecCCCCcchhHHHHHHHHHHHhcc
Confidence 445677777789999999999543 444 46777666766432 1235555543332 23 344455555544
Q ss_pred ccCCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEE
Q 011052 86 AKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII 160 (494)
Q Consensus 86 ~~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI 160 (494)
...+.+|||.+..++.+.+++.|.+ .+.+++|||.|+.+++.++++.-..++.+|++||++|+.+|.||+|.+||
T Consensus 257 ~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VI 336 (845)
T COG1643 257 EGSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVI 336 (845)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEe
Confidence 3457999999999999999999985 35689999999999999999998888888999999999999999999999
Q ss_pred ecCC------------------CCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceecCCCCHHHHH
Q 011052 161 HYEL------------------PNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVL 222 (494)
Q Consensus 161 ~~~~------------------P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~p~~~~i~ 222 (494)
+-+. |.+.++..||+|||||.+ +|.||-+|+..+.. ..+.-+..||+
T Consensus 337 DsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~-pGicyRLyse~~~~--------------~~~~~t~PEIl 401 (845)
T COG1643 337 DSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTG-PGICYRLYSEEDFL--------------AFPEFTLPEIL 401 (845)
T ss_pred cCCcccccccccccCceeeeEEEechhhhhhhccccccCC-CceEEEecCHHHHH--------------hcccCCChhhh
Confidence 6553 457788899999999997 99999999986632 22334567899
Q ss_pred HHHHHHHHHHHccCCcc-chhhhhHHHHHHHhhcCHHHHHHHHHHHcCCCCC
Q 011052 223 ESSAEQVVATLNGVHPE-SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRP 273 (494)
Q Consensus 223 ~~~~~~~~~~l~~~~~~-~~~~f~~~a~~l~~~~~~~~l~aal~~~~g~~~~ 273 (494)
...+..+...+++.... +...| .+++.+....+.+|+..|..+...
T Consensus 402 rtdLs~~vL~l~~~G~~~d~~~f-----~fld~P~~~~i~~A~~~L~~LGAl 448 (845)
T COG1643 402 RTDLSGLVLQLKSLGIGQDIAPF-----PFLDPPPEAAIQAALTLLQELGAL 448 (845)
T ss_pred hcchHHHHHHHHhcCCCCCcccC-----ccCCCCChHHHHHHHHHHHHcCCc
Confidence 99999999999887663 55555 567788888888887777644433
No 77
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.72 E-value=3e-17 Score=179.72 Aligned_cols=167 Identities=22% Similarity=0.234 Sum_probs=129.1
Q ss_pred cEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEE-EEEEcCcccHHHHHHHHH-HHhccCCcEEEEcCChh
Q 011052 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKL-YAISTTATSKRTILSDLI-TVYAKGGKTIVFTQTKR 99 (494)
Q Consensus 22 q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~-~~~~~~~~~k~~~L~~ll-~~~~~~~~~IVF~~t~~ 99 (494)
++.-||.|...+..++.+.|--+ ++.+ +. +++.....+ -.+......|...|...+ ..+..+.++||||+|++
T Consensus 377 kl~GmTGTa~~e~~Ef~~iY~l~--vv~I-Pt--nkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~ 451 (796)
T PRK12906 377 KLSGMTGTAKTEEEEFREIYNME--VITI-PT--NRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIE 451 (796)
T ss_pred hhhccCCCCHHHHHHHHHHhCCC--EEEc-CC--CCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHH
Confidence 45677888877666666656322 2322 21 221111111 112233456776666655 34456789999999999
Q ss_pred hHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCC---Cccc-----EEEecCCCCChhh
Q 011052 100 DADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDI---PNVD-----LIIHYELPNDPET 170 (494)
Q Consensus 100 ~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDi---p~v~-----~VI~~~~P~~~~~ 170 (494)
.++.++..|.+ ++++.+||+++.+.+++.+.++++.|. |+|||++|+||+|| ++|. |||+++.|.+...
T Consensus 452 ~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri 529 (796)
T PRK12906 452 SSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRI 529 (796)
T ss_pred HHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHH
Confidence 99999999986 799999999999888888888888776 99999999999999 4899 9999999999999
Q ss_pred HHHHhcccCCCCCCceEEEecChhh
Q 011052 171 FVHRSGRTGRAGKEGTAILMFTSSQ 195 (494)
Q Consensus 171 y~qr~GR~gR~G~~g~~i~l~~~~e 195 (494)
|.|+.|||||.|.+|.+.+|++..|
T Consensus 530 ~~Ql~GRtGRqG~~G~s~~~~sleD 554 (796)
T PRK12906 530 DNQLRGRSGRQGDPGSSRFYLSLED 554 (796)
T ss_pred HHHHhhhhccCCCCcceEEEEeccc
Confidence 9999999999999999999988765
No 78
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.72 E-value=2.3e-16 Score=162.47 Aligned_cols=175 Identities=24% Similarity=0.351 Sum_probs=136.9
Q ss_pred HHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHHHHHHh-------c
Q 011052 14 LENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVY-------A 86 (494)
Q Consensus 14 l~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~-------~ 86 (494)
|+.+-++.|.|.+|||+.+. ..+++++-.+.+..+ ..+.+--.|..++....+|.+++..+.+.. .
T Consensus 366 Lr~l~~~AQ~i~LSATVgNp-~elA~~l~a~lV~y~------~RPVplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg 438 (830)
T COG1202 366 LRYLFPGAQFIYLSATVGNP-EELAKKLGAKLVLYD------ERPVPLERHLVFARNESEKWDIIARLVKREFSTESSKG 438 (830)
T ss_pred HHHhCCCCeEEEEEeecCCh-HHHHHHhCCeeEeec------CCCCChhHeeeeecCchHHHHHHHHHHHHHHhhhhccC
Confidence 44555689999999999654 456665533333221 122222235555566788999998887653 1
Q ss_pred cCCcEEEEcCChhhHHHHHHHHh-ccCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEe---c
Q 011052 87 KGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH---Y 162 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~-~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~---~ 162 (494)
-.+++|||++++..|..++..|. +++++.++|++|++.+|..+...|.++++.++|+|-+++.|+|+|.-.+|.. +
T Consensus 439 ~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLaM 518 (830)
T COG1202 439 YRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESLAM 518 (830)
T ss_pred cCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHHHc
Confidence 24699999999999999999998 4899999999999999999999999999999999999999999998765552 4
Q ss_pred CCC-CChhhHHHHhcccCCCC--CCceEEEecChhh
Q 011052 163 ELP-NDPETFVHRSGRTGRAG--KEGTAILMFTSSQ 195 (494)
Q Consensus 163 ~~P-~~~~~y~qr~GR~gR~G--~~g~~i~l~~~~e 195 (494)
+.- -++..|.||+||+||.+ ..|.+|+++.+..
T Consensus 519 G~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~ 554 (830)
T COG1202 519 GIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGK 554 (830)
T ss_pred ccccCCHHHHHHHhcccCCCCcccCceEEEEecCCh
Confidence 444 38999999999999988 5699999987754
No 79
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.72 E-value=9e-17 Score=169.02 Aligned_cols=234 Identities=19% Similarity=0.323 Sum_probs=179.4
Q ss_pred HHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHH-HHHHHHHHHh--cc
Q 011052 11 ELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKR-TILSDLITVY--AK 87 (494)
Q Consensus 11 ~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~-~~L~~ll~~~--~~ 87 (494)
++|++.- ++.++|+||||+.. . ....|+.+...+.+.+. ...++.+|...+..+.. +.+..+++.+ .+
T Consensus 187 Kki~~~R-~~LklIimSATlda--~-kfS~yF~~a~i~~i~GR-----~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~ 257 (674)
T KOG0922|consen 187 KKILKKR-PDLKLIIMSATLDA--E-KFSEYFNNAPILTIPGR-----TFPVEILYLKEPTADYVDAALITVIQIHLTEP 257 (674)
T ss_pred HHHHhcC-CCceEEEEeeeecH--H-HHHHHhcCCceEeecCC-----CCceeEEeccCCchhhHHHHHHHHHHHHccCC
Confidence 3444443 46799999999953 3 34557777666766432 23366677665555543 3344444433 45
Q ss_pred CCcEEEEcCChhhHHHHHHHHhcc---C------ceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccE
Q 011052 88 GGKTIVFTQTKRDADEVSLALTSI---I------ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL 158 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~~---~------~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~ 158 (494)
.+.+|||.+..++++.+++.|.+. . -+.++||.|+.+++.++++.-..|..+|++||++|+..|.||.|.+
T Consensus 258 ~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~Y 337 (674)
T KOG0922|consen 258 PGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRY 337 (674)
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEE
Confidence 679999999999999999999742 1 2468999999999999999999999999999999999999999999
Q ss_pred EEecCC------------------CCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceecCCCCHHH
Q 011052 159 IIHYEL------------------PNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVED 220 (494)
Q Consensus 159 VI~~~~------------------P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~p~~~~ 220 (494)
||+.++ |.+.++-.||+||+||.+ +|.|+-+|+..+. +.++..+..|
T Consensus 338 VVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~--------------~~~~~~~~PE 402 (674)
T KOG0922|consen 338 VVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAY--------------DKMPLQTVPE 402 (674)
T ss_pred EEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHH--------------hhcccCCCCc
Confidence 996553 567888899999999997 9999999998874 2334455667
Q ss_pred HHHHHHHHHHHHHccCCccchhhhhHHHHHHHhhcCHHHHHHHHHHHcCCCCC
Q 011052 221 VLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRP 273 (494)
Q Consensus 221 i~~~~~~~~~~~l~~~~~~~~~~f~~~a~~l~~~~~~~~l~aal~~~~g~~~~ 273 (494)
|....+..+...|++...+++-.| .+++.+.++.+.+||..|.-+...
T Consensus 403 I~R~~Ls~~vL~Lkalgi~d~l~F-----~f~d~P~~~~l~~AL~~L~~lgal 450 (674)
T KOG0922|consen 403 IQRVNLSSAVLQLKALGINDPLRF-----PFIDPPPPEALEEALEELYSLGAL 450 (674)
T ss_pred eeeechHHHHHHHHhcCCCCcccC-----CCCCCCChHHHHHHHHHHHhcCcc
Confidence 788888888888888777776666 678888999999999998754443
No 80
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.69 E-value=1.4e-16 Score=175.65 Aligned_cols=169 Identities=21% Similarity=0.232 Sum_probs=128.8
Q ss_pred cEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHHHHHH-hccCCcEEEEcCChhh
Q 011052 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV-YAKGGKTIVFTQTKRD 100 (494)
Q Consensus 22 q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~-~~~~~~~IVF~~t~~~ 100 (494)
++--||.|...+-.++.+.|--+ ++. ++........+... .+......|...|...+.. +..+.++||||+|++.
T Consensus 535 kLaGMTGTA~te~~Ef~~iY~L~--Vv~-IPTnrP~~R~D~~d-~vy~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~ 610 (1025)
T PRK12900 535 KLAGMTGTAETEASEFFEIYKLD--VVV-IPTNKPIVRKDMDD-LVYKTRREKYNAIVLKVEELQKKGQPVLVGTASVEV 610 (1025)
T ss_pred hhcccCCCChhHHHHHHHHhCCc--EEE-CCCCCCcceecCCC-eEecCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHH
Confidence 34567777766666666655322 222 22111111111111 2223445677777766644 4567899999999999
Q ss_pred HHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCC---ccc-----EEEecCCCCChhhH
Q 011052 101 ADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP---NVD-----LIIHYELPNDPETF 171 (494)
Q Consensus 101 ~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip---~v~-----~VI~~~~P~~~~~y 171 (494)
++.++..|.. ++++.+||+ .+.+|+..+.+|+.+...|+||||+|+||+||+ .|. +||+++.|.+...|
T Consensus 611 sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid 688 (1025)
T PRK12900 611 SETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLFILGSERHESRRID 688 (1025)
T ss_pred HHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHH
Confidence 9999999985 899999997 699999999999999999999999999999998 564 45999999999999
Q ss_pred HHHhcccCCCCCCceEEEecChhhH
Q 011052 172 VHRSGRTGRAGKEGTAILMFTSSQR 196 (494)
Q Consensus 172 ~qr~GR~gR~G~~g~~i~l~~~~e~ 196 (494)
.|+.|||||.|.+|.+++|++..|.
T Consensus 689 ~Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 689 RQLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred HHHhhhhhcCCCCcceEEEechhHH
Confidence 9999999999999999999988764
No 81
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.68 E-value=3.6e-16 Score=163.18 Aligned_cols=242 Identities=18% Similarity=0.286 Sum_probs=183.0
Q ss_pred CCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHH-HHHHHHh--ccCCcEEEEc
Q 011052 19 PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTIL-SDLITVY--AKGGKTIVFT 95 (494)
Q Consensus 19 ~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L-~~ll~~~--~~~~~~IVF~ 95 (494)
++..+|+.||||..+ ++ ..|+.+..+..+.+. .-.+..+|-..+..+.+++. ..+++.+ .+.+.+|||.
T Consensus 409 pdLKllIsSAT~DAe--kF-S~fFDdapIF~iPGR-----RyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFl 480 (902)
T KOG0923|consen 409 PDLKLLISSATMDAE--KF-SAFFDDAPIFRIPGR-----RYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFL 480 (902)
T ss_pred CcceEEeeccccCHH--HH-HHhccCCcEEeccCc-----ccceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEe
Confidence 688999999999543 44 457776665555432 12355667677776665543 3444433 3567999999
Q ss_pred CChhhHHHHHHHHhc----------cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEecCC-
Q 011052 96 QTKRDADEVSLALTS----------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYEL- 164 (494)
Q Consensus 96 ~t~~~~~~l~~~L~~----------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~~~~- 164 (494)
.-.++.+.+.+.|.. .+-++++|+.||+..+.++++..-.|..+|++||++|+..|.|++|.+||+-++
T Consensus 481 tGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~ 560 (902)
T KOG0923|consen 481 TGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFV 560 (902)
T ss_pred ccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccc
Confidence 999988887777752 256899999999999999999999999999999999999999999999996442
Q ss_pred -----------------CCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceecCCCCHHHHHHHHHH
Q 011052 165 -----------------PNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAE 227 (494)
Q Consensus 165 -----------------P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~p~~~~i~~~~~~ 227 (494)
|.+..+-.||+||+||.| +|.|+-+|+...+ .+.+| .+ +..+|....+.
T Consensus 561 K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~~aY--~~eLE--------~~---t~PEIqRtnL~ 626 (902)
T KOG0923|consen 561 KQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTAWAY--EHELE--------EM---TVPEIQRTNLG 626 (902)
T ss_pred cccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeechhhh--hhhhc--------cC---CCcceeeccch
Confidence 567788899999999998 9999999997553 22222 22 23456677788
Q ss_pred HHHHHHccCCccchhhhhHHHHHHHhhcCHHHHHHHHHHHcCCCCCCCCcccccCCCCce
Q 011052 228 QVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWV 287 (494)
Q Consensus 228 ~~~~~l~~~~~~~~~~f~~~a~~l~~~~~~~~l~aal~~~~g~~~~~~~rsl~~~~~~~~ 287 (494)
.+...|+++...++-.| .+++.+..+.|..||..|..+......-.|+...+.|+
T Consensus 627 nvVL~LkSLGI~Dl~~F-----dFmDpPp~etL~~aLE~LyaLGALn~~GeLTk~GrrMa 681 (902)
T KOG0923|consen 627 NVVLLLKSLGIHDLIHF-----DFLDPPPTETLLKALEQLYALGALNHLGELTKLGRRMA 681 (902)
T ss_pred hHHHHHHhcCcchhccc-----ccCCCCChHHHHHHHHHHHHhhccccccchhhhhhhhh
Confidence 88888999888887777 78899999999999999987776655555554444444
No 82
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.67 E-value=1e-16 Score=128.05 Aligned_cols=76 Identities=39% Similarity=0.768 Sum_probs=72.2
Q ss_pred HHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCC
Q 011052 107 ALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAG 182 (494)
Q Consensus 107 ~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G 182 (494)
.|+. ++.+..+||++++.+|..+++.|+++...|||||+++++|+|+|++++||++++|+++..|+|++||++|.|
T Consensus 2 ~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 2 FLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred ChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 3443 789999999999999999999999999999999999999999999999999999999999999999999976
No 83
>PRK09694 helicase Cas3; Provisional
Probab=99.66 E-value=2.7e-15 Score=168.10 Aligned_cols=107 Identities=25% Similarity=0.449 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhcc----CceeeecCCCCHHHH----HHHHccc-cCCC---eeEE
Q 011052 74 KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI----IASEALHGDISQHQR----ERTLNGF-RQGK---FTVL 141 (494)
Q Consensus 74 k~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~~----~~~~~lhg~~~~~~R----~~~l~~F-r~g~---~~iL 141 (494)
...++..+++....++++||||||++.|+++++.|++. ..+..+|+.+++.+| +++++.| ++++ ..||
T Consensus 546 ~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~IL 625 (878)
T PRK09694 546 DLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRIL 625 (878)
T ss_pred HHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEE
Confidence 34566667766667789999999999999999999863 479999999999999 4577888 6665 4799
Q ss_pred EechhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCC
Q 011052 142 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGK 183 (494)
Q Consensus 142 VaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~ 183 (494)
|||+++++|||| +++++|....| .+.|+||+||++|.+.
T Consensus 626 VaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 626 VATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred EECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 999999999999 58999998888 6899999999999875
No 84
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.66 E-value=1.6e-16 Score=158.46 Aligned_cols=179 Identities=22% Similarity=0.351 Sum_probs=138.3
Q ss_pred CCCcEEEEeecCChHHHHHHH--HHcCCCcEEEeccccccccccceEEEEEEc---CcccHHHHHHHHHHH-hc------
Q 011052 19 PKRQSMLFSATMPSWVKKLSR--KYLDNPLNIDLVGNQDEKLAEGIKLYAIST---TATSKRTILSDLITV-YA------ 86 (494)
Q Consensus 19 ~~~q~ll~SATlp~~i~~l~~--~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~---~~~~k~~~L~~ll~~-~~------ 86 (494)
++...+.++||....+++-+- ..|++|+.|--.+ ....++ +|-.. .-.+-...|.++... +.
T Consensus 175 ~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP----~FR~NL--FYD~~~K~~I~D~~~~LaDF~~~~LG~~~~~~ 248 (641)
T KOG0352|consen 175 PGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTP----TFRDNL--FYDNHMKSFITDCLTVLADFSSSNLGKHEKAS 248 (641)
T ss_pred CCCceEEeecccChhHHHHHHHHHhhcCcHHhccCc----chhhhh--hHHHHHHHHhhhHhHhHHHHHHHhcCChhhhh
Confidence 478899999999988887443 3456776542111 111111 11000 001222333333211 11
Q ss_pred -----cCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEE
Q 011052 87 -----KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII 160 (494)
Q Consensus 87 -----~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI 160 (494)
..+..||||.|++.|++++-.|.. ++.+..+|.++...+|.++-++|.++++.|++||..+.+|+|-|+|++||
T Consensus 249 ~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFVi 328 (641)
T KOG0352|consen 249 QNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVI 328 (641)
T ss_pred cCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEE
Confidence 024679999999999999999985 89999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHH
Q 011052 161 HYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 203 (494)
Q Consensus 161 ~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le 203 (494)
|+++|.+...|.|..||+||.|+...|-++|...|...+..|.
T Consensus 329 HW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi 371 (641)
T KOG0352|consen 329 HWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLV 371 (641)
T ss_pred ecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHHH
Confidence 9999999999999999999999999999999999988777664
No 85
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.64 E-value=2.3e-15 Score=164.64 Aligned_cols=119 Identities=24% Similarity=0.339 Sum_probs=101.2
Q ss_pred cHHHHHHHHHHHhc-cCCcEEEEcCChhhHHHHHHHHhccCceeeecCCCCHHHHHHHHccccCC-CeeEEEechhhhcc
Q 011052 73 SKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQG-KFTVLVATDVAARG 150 (494)
Q Consensus 73 ~k~~~L~~ll~~~~-~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~lhg~~~~~~R~~~l~~Fr~g-~~~iLVaT~~~~~G 150 (494)
.|...+..++..+. .+.++||||.+.+.++.++..|. +..+||++++.+|.+++++|+++ .+++||+|+++.+|
T Consensus 480 ~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~----~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeG 555 (732)
T TIGR00603 480 NKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG----KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTS 555 (732)
T ss_pred HHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC----CceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccc
Confidence 45566666776552 56799999999999998888873 56799999999999999999875 78999999999999
Q ss_pred CCCCcccEEEecCCC-CChhhHHHHhcccCCCCCCceE-------EEecChhh
Q 011052 151 LDIPNVDLIIHYELP-NDPETFVHRSGRTGRAGKEGTA-------ILMFTSSQ 195 (494)
Q Consensus 151 iDip~v~~VI~~~~P-~~~~~y~qr~GR~gR~G~~g~~-------i~l~~~~e 195 (494)
||+|++++||+++.| .+..+|+||+||++|.+..+.+ |.|+++..
T Consensus 556 IDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT 608 (732)
T TIGR00603 556 IDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDT 608 (732)
T ss_pred cCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCc
Confidence 999999999999998 4999999999999999866654 66666544
No 86
>PRK13766 Hef nuclease; Provisional
Probab=99.64 E-value=1.1e-15 Score=172.90 Aligned_cols=121 Identities=36% Similarity=0.562 Sum_probs=108.2
Q ss_pred ccHHHHHHHHHHHh---ccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCC--------CCHHHHHHHHccccCCCee
Q 011052 72 TSKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGD--------ISQHQRERTLNGFRQGKFT 139 (494)
Q Consensus 72 ~~k~~~L~~ll~~~---~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~--------~~~~~R~~~l~~Fr~g~~~ 139 (494)
..|.+.|.++|... .++.++||||++++.|+.|++.|.. ++.+..+||. |++.+|.+++++|++++++
T Consensus 346 ~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~ 425 (773)
T PRK13766 346 HPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFN 425 (773)
T ss_pred ChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCC
Confidence 45777788887664 3568999999999999999999965 7788888886 9999999999999999999
Q ss_pred EEEechhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecCh
Q 011052 140 VLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTS 193 (494)
Q Consensus 140 iLVaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~ 193 (494)
|||||+++++|+|+|++++||+||+|+++..|+||+||+||.+ .+.+++++..
T Consensus 426 vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~-~~~v~~l~~~ 478 (773)
T PRK13766 426 VLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQE-EGRVVVLIAK 478 (773)
T ss_pred EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCC-CCEEEEEEeC
Confidence 9999999999999999999999999999999999999999987 4777777754
No 87
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.63 E-value=2.9e-15 Score=161.22 Aligned_cols=123 Identities=33% Similarity=0.525 Sum_probs=104.8
Q ss_pred ccHHHHHHHHHHHh---ccCCcEEEEcCChhhHHHHHHHHhc----cCceeeec--------CCCCHHHHHHHHccccCC
Q 011052 72 TSKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS----IIASEALH--------GDISQHQRERTLNGFRQG 136 (494)
Q Consensus 72 ~~k~~~L~~ll~~~---~~~~~~IVF~~t~~~~~~l~~~L~~----~~~~~~lh--------g~~~~~~R~~~l~~Fr~g 136 (494)
..|++.|..++..+ .++.++||||+||+.|..|...|.. +++...+- -+|+|.++.+++++|++|
T Consensus 394 npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G 473 (746)
T KOG0354|consen 394 NPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDG 473 (746)
T ss_pred ChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCC
Confidence 56777777766554 3567999999999999999999873 23443333 389999999999999999
Q ss_pred CeeEEEechhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhH
Q 011052 137 KFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQR 196 (494)
Q Consensus 137 ~~~iLVaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~ 196 (494)
+++|||||+++++||||+.|++||-||.-.++-..+||.|| ||+- .|.|+++++..+.
T Consensus 474 ~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa~-ns~~vll~t~~~~ 531 (746)
T KOG0354|consen 474 EINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRAR-NSKCVLLTTGSEV 531 (746)
T ss_pred CccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-cccc-CCeEEEEEcchhH
Confidence 99999999999999999999999999999999999999999 9984 8888888875443
No 88
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.61 E-value=1e-14 Score=161.89 Aligned_cols=175 Identities=22% Similarity=0.329 Sum_probs=124.5
Q ss_pred CCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEc------CcccHHHHHHHHHHHhccCCcE
Q 011052 18 PPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAIST------TATSKRTILSDLITVYAKGGKT 91 (494)
Q Consensus 18 p~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~------~~~~k~~~L~~ll~~~~~~~~~ 91 (494)
....|++.+|||+|+- .+++...-.++.....-.............++... +.......+..++.....++++
T Consensus 178 ~~~~rivgLSATlpN~-~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~qv 256 (766)
T COG1204 178 NELIRIVGLSATLPNA-EEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLESLAEGGQV 256 (766)
T ss_pred CcceEEEEEeeecCCH-HHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHHHHHhcCCeE
Confidence 3458999999999874 45555332233311111111111111111222111 1123355667777777888999
Q ss_pred EEEcCChhhHHHHHHHHhcc--------------------------------------CceeeecCCCCHHHHHHHHccc
Q 011052 92 IVFTQTKRDADEVSLALTSI--------------------------------------IASEALHGDISQHQRERTLNGF 133 (494)
Q Consensus 92 IVF~~t~~~~~~l~~~L~~~--------------------------------------~~~~~lhg~~~~~~R~~~l~~F 133 (494)
||||+++..+...+..|.+. ..+..+|++|+..+|..+.+.|
T Consensus 257 LvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~F 336 (766)
T COG1204 257 LVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAF 336 (766)
T ss_pred EEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHH
Confidence 99999999999998888620 0255789999999999999999
Q ss_pred cCCCeeEEEechhhhccCCCCcccEEE----ecC-----CCCChhhHHHHhcccCCCC--CCceEEEecCh
Q 011052 134 RQGKFTVLVATDVAARGLDIPNVDLII----HYE-----LPNDPETFVHRSGRTGRAG--KEGTAILMFTS 193 (494)
Q Consensus 134 r~g~~~iLVaT~~~~~GiDip~v~~VI----~~~-----~P~~~~~y~qr~GR~gR~G--~~g~~i~l~~~ 193 (494)
+.|+++|||||+.++.|+|+|.-.+|| -|+ .+.++-+|+|+.|||||.| ..|.++++.+.
T Consensus 337 r~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~ 407 (766)
T COG1204 337 RKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILATS 407 (766)
T ss_pred hcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEEEecC
Confidence 999999999999999999999988888 366 5678899999999999998 55777777733
No 89
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.60 E-value=1.9e-14 Score=153.07 Aligned_cols=177 Identities=19% Similarity=0.330 Sum_probs=132.2
Q ss_pred HHHhCCC-CCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHHHHHHhccCCcE
Q 011052 13 ILENLPP-KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKT 91 (494)
Q Consensus 13 Il~~lp~-~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~ 91 (494)
.|..... .+.+++||||.=+....+. .+.+ ..+.+. .+.++..-...-...+.+.+.+++..+.....++.++
T Consensus 403 ~L~~KG~~~Ph~LvMTATPIPRTLAlt--~fgD-ldvS~I---dElP~GRkpI~T~~i~~~~~~~v~e~i~~ei~~GrQa 476 (677)
T COG1200 403 ALREKGEQNPHVLVMTATPIPRTLALT--AFGD-LDVSII---DELPPGRKPITTVVIPHERRPEVYERIREEIAKGRQA 476 (677)
T ss_pred HHHHhCCCCCcEEEEeCCCchHHHHHH--Hhcc-ccchhh---ccCCCCCCceEEEEeccccHHHHHHHHHHHHHcCCEE
Confidence 3444444 6789999999644433333 3332 222222 1112222222233345567778888888888888999
Q ss_pred EEEcCChh--------hHHHHHHHHhc---cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEE
Q 011052 92 IVFTQTKR--------DADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII 160 (494)
Q Consensus 92 IVF~~t~~--------~~~~l~~~L~~---~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI 160 (494)
.|.||-.+ .|+.+++.|+. .+.+..+||.|+..++++++++|++|+++|||||.|.+.|||+|+.+++|
T Consensus 477 Y~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMV 556 (677)
T COG1200 477 YVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMV 556 (677)
T ss_pred EEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEE
Confidence 99999765 45566777774 35689999999999999999999999999999999999999999999988
Q ss_pred ecCCC-CChhhHHHHhcccCCCCCCceEEEecChhh
Q 011052 161 HYELP-NDPETFVHRSGRTGRAGKEGTAILMFTSSQ 195 (494)
Q Consensus 161 ~~~~P-~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e 195 (494)
.++.- --.+++.|-.||+||....+.|++++.+..
T Consensus 557 Ie~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 557 IENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred EechhhhhHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 87754 367889999999999999999999998766
No 90
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.58 E-value=1.7e-14 Score=151.04 Aligned_cols=225 Identities=19% Similarity=0.303 Sum_probs=164.7
Q ss_pred CCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHH-HHHHHHHHh--ccCCcEEEEc
Q 011052 19 PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRT-ILSDLITVY--AKGGKTIVFT 95 (494)
Q Consensus 19 ~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~-~L~~ll~~~--~~~~~~IVF~ 95 (494)
.+..+|++||||. .++++. |+.+.....+.+.. -.++..|...+.++..+ ++.+.+..+ ...+.+|||.
T Consensus 499 rdlKliVtSATm~--a~kf~n-fFgn~p~f~IpGRT-----yPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfm 570 (1042)
T KOG0924|consen 499 RDLKLIVTSATMD--AQKFSN-FFGNCPQFTIPGRT-----YPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFM 570 (1042)
T ss_pred ccceEEEeecccc--HHHHHH-HhCCCceeeecCCc-----cceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEec
Confidence 4779999999994 556655 55554445443321 22455565555555443 344444443 3457899999
Q ss_pred CChhhHHHHHHHHhc-----------cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEecC-
Q 011052 96 QTKRDADEVSLALTS-----------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYE- 163 (494)
Q Consensus 96 ~t~~~~~~l~~~L~~-----------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~~~- 163 (494)
+..+.++..+..+.. .+.+.++++.||+.-+.++++.-..+..+++|||++|+..|.||++.+||+.+
T Consensus 571 tGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy 650 (1042)
T KOG0924|consen 571 TGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGY 650 (1042)
T ss_pred CCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCc
Confidence 988877766665542 35789999999999999999999999999999999999999999999999766
Q ss_pred -----------------CCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceecCCCCHHHHHHHHH
Q 011052 164 -----------------LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSA 226 (494)
Q Consensus 164 -----------------~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~p~~~~i~~~~~ 226 (494)
.|.+...-.||+|||||.| +|.||-+|+.... ...+.+.+..||....+
T Consensus 651 ~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~ay-------------~~eml~stvPEIqRTNl 716 (1042)
T KOG0924|consen 651 CKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTEDAY-------------KNEMLPSTVPEIQRTNL 716 (1042)
T ss_pred eeeeecccccccceeEEEechhccchhhccccCCCC-CcceeeehhhhHH-------------HhhcccCCCchhhhcch
Confidence 3567777899999999998 9999999987542 11233445567788888
Q ss_pred HHHHHHHccCCccchhhhhHHHHHHHhhcCHHHHHHHHHHHcCC
Q 011052 227 EQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGF 270 (494)
Q Consensus 227 ~~~~~~l~~~~~~~~~~f~~~a~~l~~~~~~~~l~aal~~~~g~ 270 (494)
..+...|+++.-+++..| .+++.+..+.+..++-.|.-+
T Consensus 717 ~nvVLlLkslgV~dll~F-----dFmD~Pped~~~~sly~Lw~L 755 (1042)
T KOG0924|consen 717 SNVVLLLKSLGVDDLLKF-----DFMDPPPEDNLLNSLYQLWTL 755 (1042)
T ss_pred hhHHHHHHhcChhhhhCC-----CcCCCCHHHHHHHHHHHHHHh
Confidence 888888888776666666 566777777777777776533
No 91
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.54 E-value=9.7e-14 Score=148.67 Aligned_cols=93 Identities=27% Similarity=0.461 Sum_probs=78.3
Q ss_pred HHHHHHHHhcc---CceeeecCCCCHHHH--HHHHccccCCCeeEEEechhhhccCCCCcccEEE--ecCC----CC---
Q 011052 101 ADEVSLALTSI---IASEALHGDISQHQR--ERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII--HYEL----PN--- 166 (494)
Q Consensus 101 ~~~l~~~L~~~---~~~~~lhg~~~~~~R--~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI--~~~~----P~--- 166 (494)
++.+++.|.+. .++..+|+++++.++ ++++++|++|+.+|||+|+++++|+|+|+|++|+ ++|. |.
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra 350 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRA 350 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccch
Confidence 57888888763 578899999988766 8999999999999999999999999999999875 6664 32
Q ss_pred ---ChhhHHHHhcccCCCCCCceEEEecCh
Q 011052 167 ---DPETFVHRSGRTGRAGKEGTAILMFTS 193 (494)
Q Consensus 167 ---~~~~y~qr~GR~gR~G~~g~~i~l~~~ 193 (494)
....|+|++||+||.++.|.+++....
T Consensus 351 ~E~~~~ll~q~~GRagR~~~~g~viiqt~~ 380 (505)
T TIGR00595 351 AERGFQLLTQVAGRAGRAEDPGQVIIQTYN 380 (505)
T ss_pred HHHHHHHHHHHHhccCCCCCCCEEEEEeCC
Confidence 246789999999999999999865433
No 92
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.53 E-value=2.3e-13 Score=150.53 Aligned_cols=246 Identities=19% Similarity=0.247 Sum_probs=170.8
Q ss_pred CChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccc-----------c---ccceEEE----
Q 011052 4 VGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEK-----------L---AEGIKLY---- 65 (494)
Q Consensus 4 ~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~-----------~---~~~i~~~---- 65 (494)
..|.--+.+.+-...++.++||||||+.. +..+.|+....++.+.+...+. + .....++
T Consensus 303 ~DflLi~lk~lL~~~p~LkvILMSAT~da---e~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~ 379 (924)
T KOG0920|consen 303 TDFLLILLKDLLPRNPDLKVILMSATLDA---ELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPE 379 (924)
T ss_pred cccHHHHHHHHhhhCCCceEEEeeeecch---HHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccc
Confidence 34444443434344579999999999963 3445566666666553321100 0 0000011
Q ss_pred --------EEEcCcccHHHHHHHHHHHhc---cCCcEEEEcCChhhHHHHHHHHhc--------cCceeeecCCCCHHHH
Q 011052 66 --------AISTTATSKRTILSDLITVYA---KGGKTIVFTQTKRDADEVSLALTS--------IIASEALHGDISQHQR 126 (494)
Q Consensus 66 --------~~~~~~~~k~~~L~~ll~~~~---~~~~~IVF~~t~~~~~~l~~~L~~--------~~~~~~lhg~~~~~~R 126 (494)
......+...+++.++++.+. ..+.+|||.|..++...+++.|.. .+-+.++|+.|+..++
T Consensus 380 ~~~~~~~~~~~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ 459 (924)
T KOG0920|consen 380 RSQLRLARLKLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQ 459 (924)
T ss_pred cCccccccchhccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHH
Confidence 000011234556666666553 357899999999999999999962 2567899999999999
Q ss_pred HHHHccccCCCeeEEEechhhhccCCCCcccEEEec--------CCCC----------ChhhHHHHhcccCCCCCCceEE
Q 011052 127 ERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY--------ELPN----------DPETFVHRSGRTGRAGKEGTAI 188 (494)
Q Consensus 127 ~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~~--------~~P~----------~~~~y~qr~GR~gR~G~~g~~i 188 (494)
..+++..-.|..+|++||++|+..|.|++|-+||+. |+-. +...-.||.||+||. .+|.||
T Consensus 460 ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy 538 (924)
T KOG0920|consen 460 QAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICY 538 (924)
T ss_pred HHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeE
Confidence 999999999999999999999999999999999954 4332 345558999999998 599999
Q ss_pred EecChhhHHHHHHHHHHhCCCceecCCCCHHHHHHHHHHHHHHHHccCCccchhhhhHHHHHHHhhcCHHHHHHHHHHHc
Q 011052 189 LMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLS 268 (494)
Q Consensus 189 ~l~~~~e~~~l~~le~~~~~~~~~~~~p~~~~i~~~~~~~~~~~l~~~~~~~~~~f~~~a~~l~~~~~~~~l~aal~~~~ 268 (494)
-+|+......+ ...-+..|++...++++...++.+....+..| ..++++.+..+++..|+..+.
T Consensus 539 ~L~~~~~~~~~-------------~~~~q~PEilR~pL~~l~L~iK~l~~~~~~~f---LskaldpP~~~~v~~a~~~L~ 602 (924)
T KOG0920|consen 539 HLYTRSRYEKL-------------MLAYQLPEILRTPLEELCLHIKVLEQGSIKAF---LSKALDPPPADAVDLAIERLK 602 (924)
T ss_pred Eeechhhhhhc-------------ccccCChHHHhChHHHhhheeeeccCCCHHHH---HHHhcCCCChHHHHHHHHHHH
Confidence 99987653221 11124567888888888888887666666644 447788888888888877775
Q ss_pred C
Q 011052 269 G 269 (494)
Q Consensus 269 g 269 (494)
-
T Consensus 603 ~ 603 (924)
T KOG0920|consen 603 Q 603 (924)
T ss_pred H
Confidence 3
No 93
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.51 E-value=3e-13 Score=149.91 Aligned_cols=102 Identities=23% Similarity=0.354 Sum_probs=82.4
Q ss_pred hHHHHHHHHhc---cCceeeecCCCCH--HHHHHHHccccCCCeeEEEechhhhccCCCCcccEEE--ecCCCCC-----
Q 011052 100 DADEVSLALTS---IIASEALHGDISQ--HQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII--HYELPND----- 167 (494)
Q Consensus 100 ~~~~l~~~L~~---~~~~~~lhg~~~~--~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI--~~~~P~~----- 167 (494)
.++.+++.|.+ ...+..+|+++.+ .++++++++|++|+.+|||+|+++++|+|+|+|++|+ +.|.+-+
T Consensus 438 G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfr 517 (679)
T PRK05580 438 GTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFR 517 (679)
T ss_pred cHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccc
Confidence 45677888876 4578899999975 5789999999999999999999999999999999985 5555543
Q ss_pred -----hhhHHHHhcccCCCCCCceEEEecChhhHHHHHH
Q 011052 168 -----PETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 201 (494)
Q Consensus 168 -----~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~ 201 (494)
...|+|++||+||.++.|.+++.....+...++.
T Consensus 518 a~Er~~~~l~q~~GRagR~~~~g~viiqT~~p~~~~~~~ 556 (679)
T PRK05580 518 ASERTFQLLTQVAGRAGRAEKPGEVLIQTYHPEHPVIQA 556 (679)
T ss_pred hHHHHHHHHHHHHhhccCCCCCCEEEEEeCCCCCHHHHH
Confidence 3678999999999999999998665444343333
No 94
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.51 E-value=1.1e-13 Score=136.49 Aligned_cols=187 Identities=22% Similarity=0.328 Sum_probs=143.8
Q ss_pred hHHHHH--HHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHHHHH
Q 011052 6 FEEDVE--LILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 83 (494)
Q Consensus 6 F~~~i~--~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~ 83 (494)
|++|-. .||+.--+...++-++||....+..-++..+.-...+.+.. .. ..+++.+.... .+....+.++++.+
T Consensus 234 fr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a-~f--nr~nl~yev~q-kp~n~dd~~edi~k 309 (695)
T KOG0353|consen 234 FRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRA-GF--NRPNLKYEVRQ-KPGNEDDCIEDIAK 309 (695)
T ss_pred cCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeec-cc--CCCCceeEeee-CCCChHHHHHHHHH
Confidence 444433 34544446889999999999888877776654222222211 11 12334433333 33344455555555
Q ss_pred Hh---ccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEE
Q 011052 84 VY---AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (494)
Q Consensus 84 ~~---~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~V 159 (494)
.+ -.+...||||-++++|++++..|+. ++.+-.+|..|.+.++.-+-+.|-.|+++|+|||-.+..|||-|+|++|
T Consensus 310 ~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfv 389 (695)
T KOG0353|consen 310 LIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFV 389 (695)
T ss_pred HhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEE
Confidence 44 3456789999999999999999997 8999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhhHHH-------------------------------------------HhcccCCCCCCceEEEecChhhH
Q 011052 160 IHYELPNDPETFVH-------------------------------------------RSGRTGRAGKEGTAILMFTSSQR 196 (494)
Q Consensus 160 I~~~~P~~~~~y~q-------------------------------------------r~GR~gR~G~~g~~i~l~~~~e~ 196 (494)
||..+|.+++.|.| ..||+||.+.+..||++|.-.|.
T Consensus 390 ihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~~di 469 (695)
T KOG0353|consen 390 IHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFADI 469 (695)
T ss_pred EecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEechHHH
Confidence 99999999999999 78999999999999999876554
No 95
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.51 E-value=3.8e-14 Score=113.09 Aligned_cols=80 Identities=53% Similarity=0.867 Sum_probs=74.3
Q ss_pred HHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCC
Q 011052 103 EVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRA 181 (494)
Q Consensus 103 ~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~ 181 (494)
.+++.|.. .+.+..+||++++.+|..+++.|+++...|||+|+++++|+|+|.+++||.+++|++...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 45566654 68899999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 011052 182 G 182 (494)
Q Consensus 182 G 182 (494)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 5
No 96
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.49 E-value=1.4e-12 Score=132.57 Aligned_cols=231 Identities=17% Similarity=0.326 Sum_probs=172.7
Q ss_pred HHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHH-HHHHHHh--c
Q 011052 10 VELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTIL-SDLITVY--A 86 (494)
Q Consensus 10 i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L-~~ll~~~--~ 86 (494)
+++++..-| +..+|.||||+-. ...+.|+.++..+.+.+ ...++.+|...+..+.++.. ..+++.+ .
T Consensus 182 lk~v~~~rp-dLk~vvmSatl~a---~Kfq~yf~n~Pll~vpg------~~PvEi~Yt~e~erDylEaairtV~qih~~e 251 (699)
T KOG0925|consen 182 LKEVVRNRP-DLKLVVMSATLDA---EKFQRYFGNAPLLAVPG------THPVEIFYTPEPERDYLEAAIRTVLQIHMCE 251 (699)
T ss_pred HHHHHhhCC-CceEEEeecccch---HHHHHHhCCCCeeecCC------CCceEEEecCCCChhHHHHHHHHHHHHHhcc
Confidence 344455554 8999999999843 23466888887777642 23356677666666665544 4444444 3
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhcc----------CceeeecCCCCHHHHHHHHccccC---C--CeeEEEechhhhccC
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTSI----------IASEALHGDISQHQRERTLNGFRQ---G--KFTVLVATDVAARGL 151 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~~----------~~~~~lhg~~~~~~R~~~l~~Fr~---g--~~~iLVaT~~~~~Gi 151 (494)
..+.+|||....++.+..++.+.+. ++|.+|| ++++.++++.-.. + ..+|+|+|++++..+
T Consensus 252 e~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetsl 327 (699)
T KOG0925|consen 252 EPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSL 327 (699)
T ss_pred CCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheee
Confidence 4679999999999999999988731 5788899 5566666654432 1 357999999999999
Q ss_pred CCCcccEEEecCC------------------CCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceec
Q 011052 152 DIPNVDLIIHYEL------------------PNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFV 213 (494)
Q Consensus 152 Dip~v~~VI~~~~------------------P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~ 213 (494)
.++.|.+||+-++ |.+..+-.||.||+||. ++|.|+.+|++.-. . ..+
T Consensus 328 tidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~~~----------~---~em 393 (699)
T KOG0925|consen 328 TIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF----------E---KEM 393 (699)
T ss_pred eeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHHhh----------h---hcC
Confidence 9999999996553 66788889999999997 59999999987542 1 124
Q ss_pred CCCCHHHHHHHHHHHHHHHHccCCccchhhhhHHHHHHHhhcCHHHHHHHHHHHcCCCCC
Q 011052 214 SPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRP 273 (494)
Q Consensus 214 ~~p~~~~i~~~~~~~~~~~l~~~~~~~~~~f~~~a~~l~~~~~~~~l~aal~~~~g~~~~ 273 (494)
.+.+..+++++.+..+...++++..+.+..| .+++.+.++.++.||--+.-+...
T Consensus 394 ~~~typeilrsNL~s~VL~LKklgI~dlvhf-----dfmDpPAPEtLMrALE~LnYLaaL 448 (699)
T KOG0925|consen 394 QPQTYPEILRSNLSSTVLQLKKLGIDDLVHF-----DFMDPPAPETLMRALEVLNYLAAL 448 (699)
T ss_pred CCCCcHHHHHHhhHHHHHHHHhcCcccccCC-----cCCCCCChHHHHHHHHHhhhhhhh
Confidence 4556789999999999999999988888888 788999999999998887644433
No 97
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.47 E-value=1.3e-12 Score=134.44 Aligned_cols=168 Identities=25% Similarity=0.345 Sum_probs=131.6
Q ss_pred CCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHHHHHHhccCCcEEEEcCChh
Q 011052 20 KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKR 99 (494)
Q Consensus 20 ~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IVF~~t~~ 99 (494)
..|+|.+|||..++-.+.. ...+++-+-.+...+.+.++ +.....+..+++..+-+....+.++||-+=|++
T Consensus 386 ~~q~i~VSATPg~~E~e~s-----~~~vveQiIRPTGLlDP~ie---vRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKk 457 (663)
T COG0556 386 IPQTIYVSATPGDYELEQS-----GGNVVEQIIRPTGLLDPEIE---VRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKK 457 (663)
T ss_pred cCCEEEEECCCChHHHHhc-----cCceeEEeecCCCCCCCcee---eecCCCcHHHHHHHHHHHHhcCCeEEEEeehHH
Confidence 4699999999877644433 11233322222222233333 233344566677777666677899999999999
Q ss_pred hHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEecC-----CCCChhhHHH
Q 011052 100 DADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYE-----LPNDPETFVH 173 (494)
Q Consensus 100 ~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~~~-----~P~~~~~y~q 173 (494)
+|+.|.++|.+ ++++..+|+++..-+|.+++...|.|.++|||.-+.+-.|||+|.|.+|..+| +..+..+++|
T Consensus 458 mAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQ 537 (663)
T COG0556 458 MAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQ 537 (663)
T ss_pred HHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHH
Confidence 99999999996 89999999999999999999999999999999999999999999999998766 5678999999
Q ss_pred HhcccCCCCCCceEEEecChhhH
Q 011052 174 RSGRTGRAGKEGTAILMFTSSQR 196 (494)
Q Consensus 174 r~GR~gR~G~~g~~i~l~~~~e~ 196 (494)
-+|||+|-- .|.+|++.+.-..
T Consensus 538 tIGRAARN~-~GkvIlYAD~iT~ 559 (663)
T COG0556 538 TIGRAARNV-NGKVILYADKITD 559 (663)
T ss_pred HHHHHhhcc-CCeEEEEchhhhH
Confidence 999999963 7999988665433
No 98
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.46 E-value=3e-12 Score=125.49 Aligned_cols=175 Identities=19% Similarity=0.291 Sum_probs=121.2
Q ss_pred CCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHH------HHHHHHHHh-ccCCc
Q 011052 18 PPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRT------ILSDLITVY-AKGGK 90 (494)
Q Consensus 18 p~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~------~L~~ll~~~-~~~~~ 90 (494)
.++--+|++|||.|+.+++-+.+- +-..+.+. ...+.-+-.+..+...-.+..++. .|...|+.. ..+.+
T Consensus 231 k~~g~~IylTATp~k~l~r~~~~g--~~~~~klp-~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P 307 (441)
T COG4098 231 KKEGATIYLTATPTKKLERKILKG--NLRILKLP-ARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRP 307 (441)
T ss_pred cccCceEEEecCChHHHHHHhhhC--CeeEeecc-hhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCc
Confidence 456789999999998766544321 22223322 222222223334444444443331 344444433 45679
Q ss_pred EEEEcCChhhHHHHHHHHhcc---CceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEe-cCC-C
Q 011052 91 TIVFTQTKRDADEVSLALTSI---IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH-YEL-P 165 (494)
Q Consensus 91 ~IVF~~t~~~~~~l~~~L~~~---~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~-~~~-P 165 (494)
++||+++.+..+++++.|++. ..+..+|+. ...|.+..++||+|++++||+|.+++||+.+|+|++.|. .+- -
T Consensus 308 ~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~v 385 (441)
T COG4098 308 VLIFFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRV 385 (441)
T ss_pred EEEEecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCccc
Confidence 999999999999999999754 346778887 567888999999999999999999999999999998664 332 3
Q ss_pred CChhhHHHHhcccCCCC--CCceEEEecChhhHH
Q 011052 166 NDPETFVHRSGRTGRAG--KEGTAILMFTSSQRR 197 (494)
Q Consensus 166 ~~~~~y~qr~GR~gR~G--~~g~~i~l~~~~e~~ 197 (494)
.+.+.++|.+||+||.- .+|..+.|-......
T Consensus 386 fTesaLVQIaGRvGRs~~~PtGdv~FFH~G~ska 419 (441)
T COG4098 386 FTESALVQIAGRVGRSLERPTGDVLFFHYGKSKA 419 (441)
T ss_pred ccHHHHHHHhhhccCCCcCCCCcEEEEeccchHH
Confidence 57899999999999964 468777775544433
No 99
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.45 E-value=7.5e-13 Score=146.07 Aligned_cols=167 Identities=20% Similarity=0.183 Sum_probs=128.2
Q ss_pred cEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEE-EEEEcCcccHHHHHHHHHHH-hccCCcEEEEcCChh
Q 011052 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKL-YAISTTATSKRTILSDLITV-YAKGGKTIVFTQTKR 99 (494)
Q Consensus 22 q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~-~~~~~~~~~k~~~L~~ll~~-~~~~~~~IVF~~t~~ 99 (494)
.+.-||.|...+..++.+.|--+ ++. ++. +++.....+ -.+......|...+...+.. +..+.++||||+|++
T Consensus 367 kl~GmTGTa~te~~E~~~iY~l~--vv~-IPt--nkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~ 441 (830)
T PRK12904 367 KLAGMTGTADTEAEEFREIYNLD--VVV-IPT--NRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIE 441 (830)
T ss_pred hhcccCCCcHHHHHHHHHHhCCC--EEE-cCC--CCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHH
Confidence 45678888877777777666332 222 221 222111111 12223445677777666644 456789999999999
Q ss_pred hHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcc----------------------
Q 011052 100 DADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNV---------------------- 156 (494)
Q Consensus 100 ~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v---------------------- 156 (494)
.++.+++.|.+ ++++..||+. +.+|+..+.+|+.+...|+||||+|+||+||+==
T Consensus 442 ~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~ 519 (830)
T PRK12904 442 KSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKI 519 (830)
T ss_pred HHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHH
Confidence 99999999986 7999999996 8999999999999999999999999999999532
Q ss_pred ----------------cEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhh
Q 011052 157 ----------------DLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 195 (494)
Q Consensus 157 ----------------~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e 195 (494)
-|||-...|.+..--.|-.||+||.|.+|.+..|++-.|
T Consensus 520 ~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD 574 (830)
T PRK12904 520 KAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLED 574 (830)
T ss_pred HHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCc
Confidence 278888899999999999999999999999999887655
No 100
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.45 E-value=1.5e-12 Score=146.50 Aligned_cols=194 Identities=20% Similarity=0.332 Sum_probs=143.3
Q ss_pred HHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcC---------cccHHHHHHH
Q 011052 10 VELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTT---------ATSKRTILSD 80 (494)
Q Consensus 10 i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~---------~~~k~~~L~~ 80 (494)
+..+++..+.+.|+|+.|||+.+. .++++.+.+....+.+. +...+...+++....+ ..++...+..
T Consensus 222 L~~~~~~~~~~~q~i~~SAT~~np-~e~~~~l~~~~f~~~v~---~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~~~~~~ 297 (851)
T COG1205 222 LLRRLRRYGSPLQIICTSATLANP-GEFAEELFGRDFEVPVD---EDGSPRGLRYFVRREPPIRELAESIRRSALAELAT 297 (851)
T ss_pred HHHHHhccCCCceEEEEeccccCh-HHHHHHhcCCcceeecc---CCCCCCCceEEEEeCCcchhhhhhcccchHHHHHH
Confidence 344455556789999999999654 55677777766555432 2223334444444444 2245555555
Q ss_pred HHHHh-ccCCcEEEEcCChhhHHHHHHHHh----c-c----CceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhcc
Q 011052 81 LITVY-AKGGKTIVFTQTKRDADEVSLALT----S-I----IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 150 (494)
Q Consensus 81 ll~~~-~~~~~~IVF~~t~~~~~~l~~~L~----~-~----~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~G 150 (494)
++... ..+-++|+|+.++..|+.++.... . . ..+..+|++|...+|.+++..|+.|+..++++|++++-|
T Consensus 298 ~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~Alelg 377 (851)
T COG1205 298 LAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELG 377 (851)
T ss_pred HHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhc
Confidence 55443 456799999999999999973332 2 3 358889999999999999999999999999999999999
Q ss_pred CCCCcccEEEecCCCC-ChhhHHHHhcccCCCCCCceEEEecC--hhhHHHHHHHHHHhC
Q 011052 151 LDIPNVDLIIHYELPN-DPETFVHRSGRTGRAGKEGTAILMFT--SSQRRTVRSLERDVG 207 (494)
Q Consensus 151 iDip~v~~VI~~~~P~-~~~~y~qr~GR~gR~G~~g~~i~l~~--~~e~~~l~~le~~~~ 207 (494)
|||.+++.||.+..|. +..+++||+||+||.++....++++. +.+..++..-+....
T Consensus 378 idiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~~~d~yy~~~p~~~~~ 437 (851)
T COG1205 378 IDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSDPLDSYYLRHPEELLE 437 (851)
T ss_pred eeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCCccchhhhhCcHhhhh
Confidence 9999999999999999 89999999999999997777666654 334455555555544
No 101
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.44 E-value=6.8e-13 Score=148.36 Aligned_cols=172 Identities=22% Similarity=0.237 Sum_probs=121.1
Q ss_pred CCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccH--HHHHHHHHHHhccCCcEEEEcCC
Q 011052 20 KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSK--RTILSDLITVYAKGGKTIVFTQT 97 (494)
Q Consensus 20 ~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k--~~~L~~ll~~~~~~~~~IVF~~t 97 (494)
+..+|+||||+|+..++....++.+...+........................+. .+....+.....++.+++|.|||
T Consensus 370 g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvlvI~NT 449 (733)
T COG1203 370 GVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELIELISEEVKEGKKVLVIVNT 449 (733)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhhhhcchhhhccCCcEEEEEec
Confidence 6899999999999999988888766554432211000000000000101111111 13344455555677899999999
Q ss_pred hhhHHHHHHHHhccC-ceeeecCCCCHHHHHHHHccc----cCCCeeEEEechhhhccCCCCcccEEEecCCCCChhhHH
Q 011052 98 KRDADEVSLALTSII-ASEALHGDISQHQRERTLNGF----RQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFV 172 (494)
Q Consensus 98 ~~~~~~l~~~L~~~~-~~~~lhg~~~~~~R~~~l~~F----r~g~~~iLVaT~~~~~GiDip~v~~VI~~~~P~~~~~y~ 172 (494)
+..|.++++.|+... +++.+|+.+...+|.+.++.+ +.....|+|||+|++.|+|+. .+++|-= +..+++++
T Consensus 450 V~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mITe--~aPidSLI 526 (733)
T COG1203 450 VDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDVLITE--LAPIDSLI 526 (733)
T ss_pred HHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCeeeec--CCCHHHHH
Confidence 999999999999744 499999999999998888754 346788999999999999995 6666543 45688999
Q ss_pred HHhcccCCCC--CCceEEEecChh
Q 011052 173 HRSGRTGRAG--KEGTAILMFTSS 194 (494)
Q Consensus 173 qr~GR~gR~G--~~g~~i~l~~~~ 194 (494)
||+||++|.| ..+..+++....
T Consensus 527 QR~GRv~R~g~~~~~~~~v~~~~~ 550 (733)
T COG1203 527 QRAGRVNRHGKKENGKIYVYNDEE 550 (733)
T ss_pred HHHHHHhhcccccCCceeEeeccc
Confidence 9999999999 567777765543
No 102
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.43 E-value=1.1e-12 Score=142.90 Aligned_cols=115 Identities=30% Similarity=0.487 Sum_probs=97.8
Q ss_pred CCcEEEEcCChhhHHHHHHHHhcc---------------------------------------CceeeecCCCCHHHHHH
Q 011052 88 GGKTIVFTQTKRDADEVSLALTSI---------------------------------------IASEALHGDISQHQRER 128 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~~---------------------------------------~~~~~lhg~~~~~~R~~ 128 (494)
+.++||||+++..|+.++..+.+. +.++++|.+++.++|+.
T Consensus 460 ~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~ 539 (1008)
T KOG0950|consen 460 GSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREI 539 (1008)
T ss_pred CCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHHH
Confidence 456999999999999988665311 13678999999999999
Q ss_pred HHccccCCCeeEEEechhhhccCCCCcccEEEec---C-CCCChhhHHHHhcccCCCC--CCceEEEecChhhHHHHHHH
Q 011052 129 TLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY---E-LPNDPETFVHRSGRTGRAG--KEGTAILMFTSSQRRTVRSL 202 (494)
Q Consensus 129 ~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~~---~-~P~~~~~y~qr~GR~gR~G--~~g~~i~l~~~~e~~~l~~l 202 (494)
+...|++|.+.|++||+.++.|+++|..+++|-. + .+.+.-+|.||+|||||+| ..|.+++++.+.+.+.+..+
T Consensus 540 iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~~~~~l 619 (1008)
T KOG0950|consen 540 IEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEKKRVREL 619 (1008)
T ss_pred HHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhcccccCcceEEEeeccchhHHHHH
Confidence 9999999999999999999999999999998853 2 2357889999999999998 56999999999997766554
No 103
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.43 E-value=1.2e-12 Score=144.69 Aligned_cols=168 Identities=18% Similarity=0.187 Sum_probs=126.0
Q ss_pred cEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHH-HHHHHHhccCCcEEEEcCChhh
Q 011052 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTIL-SDLITVYAKGGKTIVFTQTKRD 100 (494)
Q Consensus 22 q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L-~~ll~~~~~~~~~IVF~~t~~~ 100 (494)
.+--||.|...+..++.+.|--+ ++. ++............. +......|...+ ..+...+..+.++||||+|++.
T Consensus 381 kLsGMTGTa~te~~Ef~~iY~l~--Vv~-IPtnkp~~R~d~~d~-v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~ 456 (896)
T PRK13104 381 KLSGMTGTADTEAYEFQQIYNLE--VVV-IPTNRSMIRKDEADL-VYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEA 456 (896)
T ss_pred hhccCCCCChhHHHHHHHHhCCC--EEE-CCCCCCcceecCCCe-EEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHH
Confidence 45567888877767776666322 222 222221111112212 223344565544 4555666778899999999999
Q ss_pred HHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCC-------------------------
Q 011052 101 ADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP------------------------- 154 (494)
Q Consensus 101 ~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip------------------------- 154 (494)
++.++..|.+ ++++.+||+.+.+.+++.+.++|+.|. |+||||+|+||+||.
T Consensus 457 sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~ 534 (896)
T PRK13104 457 SEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVK 534 (896)
T ss_pred HHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHH
Confidence 9999999986 899999999999999999999999995 999999999999984
Q ss_pred --------cc-----cEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhh
Q 011052 155 --------NV-----DLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 195 (494)
Q Consensus 155 --------~v-----~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e 195 (494)
.| -|||-...+.+..---|-.||+||.|.+|.+.+|++-.|
T Consensus 535 ~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD 588 (896)
T PRK13104 535 KEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 588 (896)
T ss_pred HHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCc
Confidence 11 178888888888888999999999999999999887655
No 104
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.42 E-value=2.2e-12 Score=144.38 Aligned_cols=187 Identities=18% Similarity=0.288 Sum_probs=142.3
Q ss_pred HHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHHHHHHhccCCc
Q 011052 11 ELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGK 90 (494)
Q Consensus 11 ~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~ 90 (494)
++-++.+..+.-++-+|||.=+....++-.-+++-..|...+. .. -.|+.+. .+. +..-+=..++.++..+++
T Consensus 733 KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~--~R--~pV~T~V--~~~-d~~~ireAI~REl~RgGQ 805 (1139)
T COG1197 733 KEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPE--DR--LPVKTFV--SEY-DDLLIREAILRELLRGGQ 805 (1139)
T ss_pred HHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCC--CC--cceEEEE--ecC-ChHHHHHHHHHHHhcCCE
Confidence 4556667778899999999766666666666677666654321 11 1122222 222 222223445566678899
Q ss_pred EEEEcCChhhHHHHHHHHhc---cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEecCCC-C
Q 011052 91 TIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELP-N 166 (494)
Q Consensus 91 ~IVF~~t~~~~~~l~~~L~~---~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~~~~P-~ 166 (494)
+-..+|..+..+++++.|+. ..++.+.||.|+..+-++++..|-+|+++|||||.+.+.|||||+++.+|..+.- -
T Consensus 806 vfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~f 885 (1139)
T COG1197 806 VFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKF 885 (1139)
T ss_pred EEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEeccccc
Confidence 99999999999999999986 3568999999999999999999999999999999999999999999987754432 3
Q ss_pred ChhhHHHHhcccCCCCCCceEEEecChh------hHHHHHHHHH
Q 011052 167 DPETFVHRSGRTGRAGKEGTAILMFTSS------QRRTVRSLER 204 (494)
Q Consensus 167 ~~~~y~qr~GR~gR~G~~g~~i~l~~~~------e~~~l~~le~ 204 (494)
-.+++.|-.||+||..+.+.||++|.+. -.+.++.|+.
T Consensus 886 GLsQLyQLRGRVGRS~~~AYAYfl~p~~k~lT~~A~kRL~aI~~ 929 (1139)
T COG1197 886 GLAQLYQLRGRVGRSNKQAYAYFLYPPQKALTEDAEKRLEAIAS 929 (1139)
T ss_pred cHHHHHHhccccCCccceEEEEEeecCccccCHHHHHHHHHHHh
Confidence 5789999999999999999999998753 3456666655
No 105
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.39 E-value=2.9e-12 Score=141.37 Aligned_cols=169 Identities=20% Similarity=0.235 Sum_probs=126.2
Q ss_pred cEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHH-HHHHHHHHhccCCcEEEEcCChhh
Q 011052 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRT-ILSDLITVYAKGGKTIVFTQTKRD 100 (494)
Q Consensus 22 q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~-~L~~ll~~~~~~~~~IVF~~t~~~ 100 (494)
.+.-||.|...+..++.+.|--+ ++.+ +...........-..+. ....|.. ++..+...+..+.++||||+|++.
T Consensus 386 kL~GMTGTa~te~~Ef~~iY~l~--Vv~I-PTnkp~~R~d~~d~iy~-t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~ 461 (908)
T PRK13107 386 KLAGMTGTADTEAFEFQHIYGLD--TVVV-PTNRPMVRKDMADLVYL-TADEKYQAIIKDIKDCRERGQPVLVGTVSIEQ 461 (908)
T ss_pred HhhcccCCChHHHHHHHHHhCCC--EEEC-CCCCCccceeCCCcEEe-CHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHH
Confidence 45567888776666666666332 2222 11111111112212222 2334544 455566666778899999999999
Q ss_pred HHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCC-------------------------
Q 011052 101 ADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP------------------------- 154 (494)
Q Consensus 101 ~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip------------------------- 154 (494)
++.++..|.+ ++++.+||+++++.+++.+.+.|+.|. |+|||++|+||+||.
T Consensus 462 se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~ 539 (908)
T PRK13107 462 SELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKA 539 (908)
T ss_pred HHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHH
Confidence 9999999986 899999999999999999999999998 999999999999984
Q ss_pred -------cc-----cEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhH
Q 011052 155 -------NV-----DLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQR 196 (494)
Q Consensus 155 -------~v-----~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~ 196 (494)
.| -|||-...+.+..---|-.||+||.|.+|.+.+|++-.|.
T Consensus 540 ~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 540 DWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred HHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 12 2788888899998899999999999999999998876653
No 106
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.34 E-value=1.4e-11 Score=133.77 Aligned_cols=106 Identities=28% Similarity=0.416 Sum_probs=89.7
Q ss_pred CcEEEEcCChhhHHHHHHHHhc-cC---------------------------------------ceeeecCCCCHHHHHH
Q 011052 89 GKTIVFTQTKRDADEVSLALTS-II---------------------------------------ASEALHGDISQHQRER 128 (494)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~-~~---------------------------------------~~~~lhg~~~~~~R~~ 128 (494)
-++||||-+++.|++.++.|.. .+ .++++||++-+--++-
T Consensus 568 LP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~ 647 (1248)
T KOG0947|consen 568 LPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEV 647 (1248)
T ss_pred CceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHH
Confidence 4899999999999999999852 10 3678999999999999
Q ss_pred HHccccCCCeeEEEechhhhccCCCCcccEEEec----C----CCCChhhHHHHhcccCCCC--CCceEEEecChh
Q 011052 129 TLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY----E----LPNDPETFVHRSGRTGRAG--KEGTAILMFTSS 194 (494)
Q Consensus 129 ~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~~----~----~P~~~~~y~qr~GR~gR~G--~~g~~i~l~~~~ 194 (494)
+..-|..|-++||+||..++.|+|+|.-.+|+.- | ---.+-.|.||+|||||.| .+|++++++...
T Consensus 648 VE~LFqrGlVKVLFATETFAMGVNMPARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 648 VELLFQRGLVKVLFATETFAMGVNMPARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred HHHHHhcCceEEEeehhhhhhhcCCCceeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 9999999999999999999999999998888731 1 1135778999999999988 679998887654
No 107
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.33 E-value=1.7e-11 Score=128.58 Aligned_cols=255 Identities=16% Similarity=0.223 Sum_probs=160.2
Q ss_pred CCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEech-----hhhcc-CCCCcc
Q 011052 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARG-LDIPNV 156 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~-----~~~~G-iDip~v 156 (494)
...+||.+|||+.|.++...+.. .+.+.+++|+.+...|.+.+++ .++|+|||+ .+..| +|+..|
T Consensus 165 ~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~----gvdiviaTPGRl~d~le~g~~~l~~v 240 (519)
T KOG0331|consen 165 GPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLER----GVDVVIATPGRLIDLLEEGSLNLSRV 240 (519)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhc----CCcEEEeCChHHHHHHHcCCccccce
Confidence 45799999999999999988764 3569999999999999999988 899999997 55555 788899
Q ss_pred cEEE--------ecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHH-hCCCceecCCCCHHHHH-----
Q 011052 157 DLII--------HYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERD-VGCKFEFVSPPVVEDVL----- 222 (494)
Q Consensus 157 ~~VI--------~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~-~~~~~~~~~~p~~~~i~----- 222 (494)
+|+| +.++-.+++.+++.+.++-| -.++++..-...++.|... ++ ....+.+-...+..
T Consensus 241 ~ylVLDEADrMldmGFe~qI~~Il~~i~~~~r------Qtlm~saTwp~~v~~lA~~fl~-~~~~i~ig~~~~~~a~~~i 313 (519)
T KOG0331|consen 241 TYLVLDEADRMLDMGFEPQIRKILSQIPRPDR------QTLMFSATWPKEVRQLAEDFLN-NPIQINVGNKKELKANHNI 313 (519)
T ss_pred eEEEeccHHhhhccccHHHHHHHHHhcCCCcc------cEEEEeeeccHHHHHHHHHHhc-CceEEEecchhhhhhhcch
Confidence 9988 45566778888999988776 2333333333334444332 33 22222111111111
Q ss_pred ------------HHHHHHHHHHHccCCccchhhhhHH---HHHHHhhcCHHHHHHHHHHHcCCCCCCCCcccccCCCCce
Q 011052 223 ------------ESSAEQVVATLNGVHPESVEFFTPT---AQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWV 287 (494)
Q Consensus 223 ------------~~~~~~~~~~l~~~~~~~~~~f~~~---a~~l~~~~~~~~l~aal~~~~g~~~~~~~rsl~~~~~~~~ 287 (494)
...+..++....+..+..+..|-++ ++++...+....+-+...|.. .+|..+...|...++|..
T Consensus 314 ~qive~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd-~sQ~eR~~~L~~FreG~~ 392 (519)
T KOG0331|consen 314 RQIVEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGD-KSQSERDWVLKGFREGKS 392 (519)
T ss_pred hhhhhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeeccc-ccHHHHHHHHHhcccCCc
Confidence 1111222222221122222223222 222222111111112222221 233334445667889999
Q ss_pred EEEEecCCccccCccchhHHHHHhhhhcCcCccc----cccEEEeecCCcceeEEec-CHHHHHHHHhhcCCCC
Q 011052 288 TLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDL-PEEIAKELLNKQIPPG 356 (494)
Q Consensus 288 t~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~~d~-~~~~~~~~~~~~~~~~ 356 (494)
-++|++|. |++++|.++|..+|+++.|...+| ||+++++...+.+.+||.. +...+.++++.+.+.+
T Consensus 393 ~vLVATdV--AaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e~~ 464 (519)
T KOG0331|consen 393 PVLVATDV--AARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLREAG 464 (519)
T ss_pred ceEEEccc--ccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHHHcc
Confidence 99999999 899999999999999999988887 8888887777777888877 4556666666655544
No 108
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=1.5e-11 Score=131.20 Aligned_cols=117 Identities=23% Similarity=0.387 Sum_probs=89.2
Q ss_pred eeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEecCCC--------C----------ChhhHHHHh
Q 011052 114 SEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELP--------N----------DPETFVHRS 175 (494)
Q Consensus 114 ~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~~~~P--------~----------~~~~y~qr~ 175 (494)
|.+|++=++...+.++++.--.|..-++|||+||+..|.||+|.+||+++.- . +..+--||+
T Consensus 607 vLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRA 686 (1172)
T KOG0926|consen 607 VLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRA 686 (1172)
T ss_pred EeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhc
Confidence 4556778899999999999999998999999999999999999999976643 2 334447999
Q ss_pred cccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceecCCCCHHHHHHHHHHHHHHHHccCCccchhhh
Q 011052 176 GRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFF 244 (494)
Q Consensus 176 GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~p~~~~i~~~~~~~~~~~l~~~~~~~~~~f 244 (494)
|||||.| .|+||-+|+..-.. ..|+.. +..+|++.-.+.++..+++.+...+..|
T Consensus 687 GRAGRtg-pGHcYRLYSSAVf~----------~~Fe~f---S~PEIlk~Pve~lvLqMKsMnI~kVvnF 741 (1172)
T KOG0926|consen 687 GRAGRTG-PGHCYRLYSSAVFS----------NDFEEF---SLPEILKKPVESLVLQMKSMNIDKVVNF 741 (1172)
T ss_pred cccCCCC-CCceeehhhhHHhh----------cchhhh---ccHHHhhCcHHHHHHHHHhcCccceecC
Confidence 9999998 99999999864321 112222 3456777777778888887766655544
No 109
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.31 E-value=1.8e-10 Score=119.10 Aligned_cols=224 Identities=18% Similarity=0.215 Sum_probs=151.2
Q ss_pred CCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCc---cc------HHHHHHHHH-HHhccC
Q 011052 19 PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA---TS------KRTILSDLI-TVYAKG 88 (494)
Q Consensus 19 ~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~---~~------k~~~L~~ll-~~~~~~ 88 (494)
.+.|++-.|||+...++-....+ +-..++++... -.+..-+++.++.++ .+ +..-..+++ +....+
T Consensus 450 ~~~~~~~~~~~~K~~~~~~~~~~--~~~E~~Li~~D--GSPs~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i~~~ 525 (1034)
T KOG4150|consen 450 INMGVYDGDTPYKDRTRLRSELA--NLSELELVTID--GSPSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMVQHG 525 (1034)
T ss_pred cCcceEeCCCCcCCHHHHHHHhc--CCcceEEEEec--CCCCccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHHHcC
Confidence 47899999999977765544333 22333333221 123344555555443 11 221222222 223456
Q ss_pred CcEEEEcCChhhHHHHHHHHhccC---------ceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEE
Q 011052 89 GKTIVFTQTKRDADEVSLALTSII---------ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (494)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~~~---------~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~V 159 (494)
-++|-||+.++.|+.+....++-+ .+..+.|+....+|.++...+-.|+..-+|||++++.||||..++.|
T Consensus 526 ~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAV 605 (1034)
T KOG4150|consen 526 LRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAV 605 (1034)
T ss_pred CcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeE
Confidence 799999999999998766655311 24567899999999999999999999999999999999999999999
Q ss_pred EecCCCCChhhHHHHhcccCCCCCCceEEEe--cChhhHHHHHHHHHHhCCC-ceecCCCCHHHHHHHHHHHHHHHHccC
Q 011052 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILM--FTSSQRRTVRSLERDVGCK-FEFVSPPVVEDVLESSAEQVVATLNGV 236 (494)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l--~~~~e~~~l~~le~~~~~~-~~~~~~p~~~~i~~~~~~~~~~~l~~~ 236 (494)
+++++|.+...+.|..||+||..++..++++ ..|-|..++..-+...+.+ ++.....+..-+++.++.-....|.-.
T Consensus 606 l~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~~HP~~l~~~pN~EL~LD~~N~~iL~~HlQCAA~ELPIN 685 (1034)
T KOG4150|consen 606 LHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYMSHPDKLFGSPNEELHLDSQNKHVLMQHLQCAALELPIN 685 (1034)
T ss_pred EEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHhhcCcHHHhCCCcceeEEecccHHHHHHHHhHHhhcCccc
Confidence 9999999999999999999999988776654 4566777776666655443 333333445566666665555444433
Q ss_pred CccchhhhhH
Q 011052 237 HPESVEFFTP 246 (494)
Q Consensus 237 ~~~~~~~f~~ 246 (494)
-..+.++|.+
T Consensus 686 ~~~D~q~Fg~ 695 (1034)
T KOG4150|consen 686 LQYDQQHFGS 695 (1034)
T ss_pred cchhhhhccc
Confidence 3333444543
No 110
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.29 E-value=4.4e-12 Score=130.95 Aligned_cols=245 Identities=18% Similarity=0.223 Sum_probs=180.3
Q ss_pred CcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEech------------------
Q 011052 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD------------------ 145 (494)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~------------------ 145 (494)
..+||++||++.|+++++.-++ .+.+...+|+.+...+.+-+++ .++|||||+
T Consensus 153 P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~----gcdIlvaTpGrL~d~~e~g~i~l~~~k 228 (482)
T KOG0335|consen 153 PRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKR----GCDILVATPGRLKDLIERGKISLDNCK 228 (482)
T ss_pred CceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhcc----CccEEEecCchhhhhhhcceeehhhCc
Confidence 5789999999999999999875 3678888999776666655555 899999998
Q ss_pred -----hhhccCC----CCcccEEEecC-CCC---------------Ch---------hhH-HHHhcccCCCC-CCceEEE
Q 011052 146 -----VAARGLD----IPNVDLIIHYE-LPN---------------DP---------ETF-VHRSGRTGRAG-KEGTAIL 189 (494)
Q Consensus 146 -----~~~~GiD----ip~v~~VI~~~-~P~---------------~~---------~~y-~qr~GR~gR~G-~~g~~i~ 189 (494)
.|.+.|| .|+++++|.+. +|. ++ +.| .+++||.|+.- ..-.+++
T Consensus 229 ~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~ 308 (482)
T KOG0335|consen 229 FLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKIL 308 (482)
T ss_pred EEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEee
Confidence 5667777 26777666433 321 11 111 35667777753 4456777
Q ss_pred ecChhhHH-HHHHHHHHhC-----------CCceecCCCCHHHHHHHHHHHHHHHHccCCccchhhhhHHHHHHHhhcCH
Q 011052 190 MFTSSQRR-TVRSLERDVG-----------CKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGT 257 (494)
Q Consensus 190 l~~~~e~~-~l~~le~~~~-----------~~~~~~~~p~~~~i~~~~~~~~~~~l~~~~~~~~~~f~~~a~~l~~~~~~ 257 (494)
++...+++ .+-.+..... ..+.+++.+...+.+...+...-...+++|.+..+..++.+..++.....
T Consensus 309 ~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~ 388 (482)
T KOG0335|consen 309 FVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKA 388 (482)
T ss_pred eecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCc
Confidence 77766544 3333322111 34567888888888888888888888899999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCcccccCCCCceEEEEecCCccccCccchhHHHHHhhhhcCcCccccccEEEeecCCcceeE
Q 011052 258 DALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAV 337 (494)
Q Consensus 258 ~~l~aal~~~~g~~~~~~~rsl~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~ig~i~~~~~~~~~gs~ 337 (494)
..++|+.+...|++.+ .|++++++|. |.++..++|+.+++.+ .|+.+++ -+|
T Consensus 389 pvlVaT~VaaRGlDi~------------~V~hVInyDm--------P~d~d~YvHRIGRTGR--~Gn~G~a------tsf 440 (482)
T KOG0335|consen 389 PVLVATNVAARGLDIP------------NVKHVINYDM--------PADIDDYVHRIGRTGR--VGNGGRA------TSF 440 (482)
T ss_pred ceEEEehhhhcCCCCC------------CCceeEEeec--------CcchhhHHHhcccccc--CCCCcee------EEE
Confidence 9999999999999988 8999999998 8999999999666555 5555544 456
Q ss_pred Ee-cCHHHHHHHHhhcCCCCCceEeeccCCCcCCC
Q 011052 338 FD-LPEEIAKELLNKQIPPGNTISKITKLPALQDD 371 (494)
Q Consensus 338 ~d-~~~~~~~~~~~~~~~~~~~l~v~~~LP~~~~~ 371 (494)
|+ ...++++.+.+...+.+ ++.|.+..+
T Consensus 441 ~n~~~~~i~~~L~~~l~ea~------q~vP~wl~~ 469 (482)
T KOG0335|consen 441 FNEKNQNIAKALVEILTEAN------QEVPQWLSE 469 (482)
T ss_pred eccccchhHHHHHHHHHHhc------ccCcHHHHh
Confidence 66 67788888888777655 345555544
No 111
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.25 E-value=2.2e-10 Score=125.81 Aligned_cols=175 Identities=19% Similarity=0.337 Sum_probs=118.8
Q ss_pred CCCCcEEEEeecCChHHHHHHHHHcC-CCc-EEEeccccccccccceEEEEEEcCcc---cHHH-----HHHHHHHHhcc
Q 011052 18 PPKRQSMLFSATMPSWVKKLSRKYLD-NPL-NIDLVGNQDEKLAEGIKLYAISTTAT---SKRT-----ILSDLITVYAK 87 (494)
Q Consensus 18 p~~~q~ll~SATlp~~i~~l~~~~l~-~p~-~i~~~~~~~~~~~~~i~~~~~~~~~~---~k~~-----~L~~ll~~~~~ 87 (494)
....+++.+|||+|+- .+++. ||+ +|. -+-.-...-. +-.+.+.++-.+.. .+.+ ....+++.+..
T Consensus 273 qs~IRivgLSATlPN~-eDvA~-fL~vn~~~glfsFd~~yR--PvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~~ 348 (1230)
T KOG0952|consen 273 QSMIRIVGLSATLPNY-EDVAR-FLRVNPYAGLFSFDQRYR--PVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQE 348 (1230)
T ss_pred hhheEEEEeeccCCCH-HHHHH-HhcCCCccceeeeccccc--ccceeeeEEeeecccchhhhhhHHHHHHHHHHHHHHc
Confidence 3567899999999974 45554 555 322 1111111111 12233333322222 1111 22345555667
Q ss_pred CCcEEEEcCChhhHHHHHHHHhc-----c-------------------CceeeecCCCCHHHHHHHHccccCCCeeEEEe
Q 011052 88 GGKTIVFTQTKRDADEVSLALTS-----I-------------------IASEALHGDISQHQRERTLNGFRQGKFTVLVA 143 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~-----~-------------------~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVa 143 (494)
+.+++|||.++..+...|+.|.+ + .....+|++|.-.+|..+.+.|..|.++||+|
T Consensus 349 g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~c 428 (1230)
T KOG0952|consen 349 GHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCC 428 (1230)
T ss_pred CCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEe
Confidence 88999999999999998888852 1 12457899999999999999999999999999
Q ss_pred chhhhccCCCCcccEEE----ecCCCC------ChhhHHHHhcccCCCC--CCceEEEecChhhH
Q 011052 144 TDVAARGLDIPNVDLII----HYELPN------DPETFVHRSGRTGRAG--KEGTAILMFTSSQR 196 (494)
Q Consensus 144 T~~~~~GiDip~v~~VI----~~~~P~------~~~~y~qr~GR~gR~G--~~g~~i~l~~~~e~ 196 (494)
|..++.|+|+|+--+|| -||.-. ..-+.+|..|||||.. ..|.++++.+....
T Consensus 429 TaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl 493 (1230)
T KOG0952|consen 429 TATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKL 493 (1230)
T ss_pred cceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHH
Confidence 99999999999865555 244332 4566799999999976 67888887665443
No 112
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.25 E-value=1.4e-10 Score=128.99 Aligned_cols=175 Identities=21% Similarity=0.331 Sum_probs=121.5
Q ss_pred CCCcEEEEeecCChHHHHHHHHHcC-CCcEEEeccccccccccceEEEEEEcCcc--cH-HH-----HHHHHHHHhccCC
Q 011052 19 PKRQSMLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKLAEGIKLYAISTTAT--SK-RT-----ILSDLITVYAKGG 89 (494)
Q Consensus 19 ~~~q~ll~SATlp~~i~~l~~~~l~-~p~~i~~~~~~~~~~~~~i~~~~~~~~~~--~k-~~-----~L~~ll~~~~~~~ 89 (494)
..++++-+|||+|+-. +.+ .|+. ++.-+-.-+..-. +..+++.++-+... .| .+ ...++++... ..
T Consensus 473 e~~RlVGLSATLPNy~-DV~-~Fl~v~~~glf~fd~syR--pvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~ag-k~ 547 (1674)
T KOG0951|consen 473 EGSRLVGLSATLPNYE-DVA-SFLRVDPEGLFYFDSSYR--PVPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAG-KN 547 (1674)
T ss_pred cCceeeeecccCCchh-hhH-HHhccCcccccccCcccC--cCCccceEeccccCCchHHHHHHHHHHHHHHHHhCC-CC
Confidence 4789999999999753 222 2433 3322212111112 22344555544332 22 22 2334444443 38
Q ss_pred cEEEEcCChhhHHHHHHHHhcc--------------------------------------CceeeecCCCCHHHHHHHHc
Q 011052 90 KTIVFTQTKRDADEVSLALTSI--------------------------------------IASEALHGDISQHQRERTLN 131 (494)
Q Consensus 90 ~~IVF~~t~~~~~~l~~~L~~~--------------------------------------~~~~~lhg~~~~~~R~~~l~ 131 (494)
++|||+.+|+++.+.|..++.. +..+.+|+||+..+|..+.+
T Consensus 548 qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~Ed 627 (1674)
T KOG0951|consen 548 QVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVED 627 (1674)
T ss_pred cEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHH
Confidence 9999999999888888777510 14677999999999999999
Q ss_pred cccCCCeeEEEechhhhccCCCCcccEEE----ecCC------CCChhhHHHHhcccCCCC--CCceEEEecChhhHHH
Q 011052 132 GFRQGKFTVLVATDVAARGLDIPNVDLII----HYEL------PNDPETFVHRSGRTGRAG--KEGTAILMFTSSQRRT 198 (494)
Q Consensus 132 ~Fr~g~~~iLVaT~~~~~GiDip~v~~VI----~~~~------P~~~~~y~qr~GR~gR~G--~~g~~i~l~~~~e~~~ 198 (494)
.|++|.++|||+|-.+++|+|+|.-+++| -|++ +.++.+.+||.||+||.+ ..|..++.....|..+
T Consensus 628 Lf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiiit~~se~qy 706 (1674)
T KOG0951|consen 628 LFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQY 706 (1674)
T ss_pred HHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhh
Confidence 99999999999999999999999998888 3654 457889999999999987 4566777666655443
No 113
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.24 E-value=6.2e-11 Score=134.74 Aligned_cols=134 Identities=18% Similarity=0.362 Sum_probs=110.7
Q ss_pred ccHHHHHHHHHHHh-ccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCC---CeeEEEechh
Q 011052 72 TSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQG---KFTVLVATDV 146 (494)
Q Consensus 72 ~~k~~~L~~ll~~~-~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g---~~~iLVaT~~ 146 (494)
..|+.+|..+|..+ ..+.++||||......+.|.+.|.. ++.++.+||+++..+|..+++.|.+. ...+|++|.+
T Consensus 470 SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrA 549 (1033)
T PLN03142 470 SGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRA 549 (1033)
T ss_pred hhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccc
Confidence 46778888887665 3467999999999999999999874 78999999999999999999999753 3568999999
Q ss_pred hhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEE--ecCh--hhHHHHHHHHHH
Q 011052 147 AARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAIL--MFTS--SQRRTVRSLERD 205 (494)
Q Consensus 147 ~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~--l~~~--~e~~~l~~le~~ 205 (494)
++.|||+..+++||+||+||++..+.|++||+.|.|++..+.+ |++. -|.+.+....+.
T Consensus 550 GGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera~~K 612 (1033)
T PLN03142 550 GGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKK 612 (1033)
T ss_pred cccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999997766554 3433 244444444333
No 114
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.21 E-value=2.6e-10 Score=121.47 Aligned_cols=247 Identities=17% Similarity=0.232 Sum_probs=122.9
Q ss_pred cEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEech------hhhccCCCCcccE
Q 011052 90 KTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD------VAARGLDIPNVDL 158 (494)
Q Consensus 90 ~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~------~~~~GiDip~v~~ 158 (494)
++||.|||++.|.++++.+.. .+.+..++|+.+...+...+. +..+|||||+ .....+++.++++
T Consensus 77 ~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~----~~~~IiV~TP~rL~~~~~~~~~~l~~v~~ 152 (456)
T PRK10590 77 RALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLR----GGVDVLVATPGRLLDLEHQNAVKLDQVEI 152 (456)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHc----CCCcEEEEChHHHHHHHHcCCcccccceE
Confidence 699999999999999988874 356788899998877655543 3789999997 2344567888888
Q ss_pred EEec--CC--CCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHH-hCCCcee-cC-CCC-HHHH-------HH
Q 011052 159 IIHY--EL--PNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERD-VGCKFEF-VS-PPV-VEDV-------LE 223 (494)
Q Consensus 159 VI~~--~~--P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~-~~~~~~~-~~-~p~-~~~i-------~~ 223 (494)
||.= |. -......+.++= .... ....+++++.+-...+..+... +...... +. ... .+.+ ..
T Consensus 153 lViDEah~ll~~~~~~~i~~il--~~l~-~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~ 229 (456)
T PRK10590 153 LVLDEADRMLDMGFIHDIRRVL--AKLP-AKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDK 229 (456)
T ss_pred EEeecHHHHhccccHHHHHHHH--HhCC-ccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCH
Confidence 7732 21 111111111110 0111 1122333333222223333322 2222111 00 000 0000 00
Q ss_pred HHHHHHHHHHc-cCCccchhhhhHHHHHHHhhcCHHHHHHHHHHHcCC---------CCCCCCcccccCCCCceEEEEec
Q 011052 224 SSAEQVVATLN-GVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGF---------SRPPSSRSLINHEQGWVTLQLTR 293 (494)
Q Consensus 224 ~~~~~~~~~l~-~~~~~~~~~f~~~a~~l~~~~~~~~l~aal~~~~g~---------~~~~~~rsl~~~~~~~~t~~~~~ 293 (494)
.....++..+. ......+-.|.... ...+.++..|.+ .++ ++..+.+.+...+.+.+.++|++
T Consensus 230 ~~k~~~l~~l~~~~~~~~~lVF~~t~------~~~~~l~~~L~~-~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT 302 (456)
T PRK10590 230 KRKRELLSQMIGKGNWQQVLVFTRTK------HGANHLAEQLNK-DGIRSAAIHGNKSQGARTRALADFKSGDIRVLVAT 302 (456)
T ss_pred HHHHHHHHHHHHcCCCCcEEEEcCcH------HHHHHHHHHHHH-CCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEc
Confidence 01111111111 11111111221110 011223333322 111 11112223344567788899999
Q ss_pred CCccccCccchhHHHHHhhhhcCcCccc----cccEEEeecCCcceeEEecCHHHHHHHHhhc
Q 011052 294 DSAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDLPEEIAKELLNKQ 352 (494)
Q Consensus 294 ~~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~~d~~~~~~~~~~~~~ 352 (494)
+. ...++|.++|..+|+...|...++ +|+..+....+.+-+++...+....+.+++.
T Consensus 303 dv--~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~ 363 (456)
T PRK10590 303 DI--AARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKL 363 (456)
T ss_pred cH--HhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHH
Confidence 87 678899999998888887765544 6777776665544466666554444444443
No 115
>PF08152 GUCT: GUCT (NUC152) domain; InterPro: IPR012562 This is the C-terminal domain found in the RNA helicase II / Gu protein family [].; GO: 0003723 RNA binding, 0004386 helicase activity, 0005524 ATP binding, 0005634 nucleus; PDB: 2E29_A.
Probab=99.21 E-value=1.3e-11 Score=102.35 Aligned_cols=95 Identities=38% Similarity=0.563 Sum_probs=51.3
Q ss_pred CCCCCCCCcccccCCCCceEEEEecCCccccCccchhHHHHHhhhhcCc-CccccccEEEeecCCcceeEEecCHHHHHH
Q 011052 269 GFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPT-AADEIGKIHIIADDRVQGAVFDLPEEIAKE 347 (494)
Q Consensus 269 g~~~~~~~rsl~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~i~~~~~~-~~~~ig~i~~~~~~~~~gs~~d~~~~~~~~ 347 (494)
|+.+ ++.|||+++.+|++|+.+....++ -++..++..|.+..+. ..+.|++|.+.++. +|++||||++.+++
T Consensus 1 G~t~-~~~RSLLt~~~g~vTl~l~~~~~i----~~~~y~~~~L~~~L~e~~~~~v~~m~l~~d~--~GavFDvP~~~~~~ 73 (97)
T PF08152_consen 1 GYTE-IKQRSLLTSEEGFVTLQLTCSREI----RSPGYAWRILRRQLSEEIADKVKGMTLLKDK--MGAVFDVPSEIAEE 73 (97)
T ss_dssp S-S--------------EEEEEEE-SS------SSTHHHHHHHHHHS-HHHHTT-EEEEE-TTS--SEEEEEEEHHHHHH
T ss_pred CCCC-CCccccccCCCCCEEEEEEcCCcC----CCchhHHHHHHHhcCHHHHHhhCcEEEecCC--CEEEEEChHHHHHH
Confidence 4556 788999999999999999887643 3466777777766553 55679999999886 79999999999999
Q ss_pred HHhhcCCC-CCceEeeccCCCcCC
Q 011052 348 LLNKQIPP-GNTISKITKLPALQD 370 (494)
Q Consensus 348 ~~~~~~~~-~~~l~v~~~LP~~~~ 370 (494)
+++.+.+. +++++++++||+|++
T Consensus 74 ~~~~~~~~~~~~l~v~~~LPeL~e 97 (97)
T PF08152_consen 74 FLAKWEDSRGWQLSVATELPELQE 97 (97)
T ss_dssp HHHH--SS-S-EEE----------
T ss_pred HHHhCcccCCcEEEEcccCcCccC
Confidence 99998885 999999999999874
No 116
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.17 E-value=1.3e-10 Score=123.07 Aligned_cols=102 Identities=32% Similarity=0.532 Sum_probs=92.0
Q ss_pred HHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcc
Q 011052 78 LSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNV 156 (494)
Q Consensus 78 L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v 156 (494)
+..++..+..+.+++|||..++.++.++..+.. .+ +..+.+..++.+|..++++|+.+.+++||++.++..|+|+|++
T Consensus 273 ~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~ 351 (442)
T COG1061 273 VRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDA 351 (442)
T ss_pred HHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCC
Confidence 333443332457999999999999999999985 45 8899999999999999999999999999999999999999999
Q ss_pred cEEEecCCCCChhhHHHHhcccCC
Q 011052 157 DLIIHYELPNDPETFVHRSGRTGR 180 (494)
Q Consensus 157 ~~VI~~~~P~~~~~y~qr~GR~gR 180 (494)
+++|......+...|+||+||.-|
T Consensus 352 ~~~i~~~~t~S~~~~~Q~lGR~LR 375 (442)
T COG1061 352 DVLIILRPTGSRRLFIQRLGRGLR 375 (442)
T ss_pred cEEEEeCCCCcHHHHHHHhhhhcc
Confidence 999999999999999999999999
No 117
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.17 E-value=1.1e-10 Score=124.05 Aligned_cols=107 Identities=24% Similarity=0.419 Sum_probs=88.6
Q ss_pred CCcEEEEcCChhhHHHHHHHHhcc-C---------------------------------------ceeeecCCCCHHHHH
Q 011052 88 GGKTIVFTQTKRDADEVSLALTSI-I---------------------------------------ASEALHGDISQHQRE 127 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~~-~---------------------------------------~~~~lhg~~~~~~R~ 127 (494)
..++|||+-++++|+.+|..+.+- + .+.++|+|+-+--++
T Consensus 383 ~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE 462 (1041)
T KOG0948|consen 383 YLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKE 462 (1041)
T ss_pred CCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHH
Confidence 358999999999999998887531 1 255789999999999
Q ss_pred HHHccccCCCeeEEEechhhhccCCCCcccEEEe----cCC---C-CChhhHHHHhcccCCCC--CCceEEEecChh
Q 011052 128 RTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH----YEL---P-NDPETFVHRSGRTGRAG--KEGTAILMFTSS 194 (494)
Q Consensus 128 ~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~----~~~---P-~~~~~y~qr~GR~gR~G--~~g~~i~l~~~~ 194 (494)
.+.--|..|-+++|.||..++.|+|+|.-++|.- ||- - .+.-.|+|++|||||.| ..|.||++++..
T Consensus 463 ~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 463 VIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred HHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCCcceeeecccceEEecccccccCCCCCceEEEEecCc
Confidence 9999999999999999999999999999887772 331 1 25667999999999998 558899988653
No 118
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.05 E-value=2.7e-09 Score=109.36 Aligned_cols=257 Identities=15% Similarity=0.184 Sum_probs=147.3
Q ss_pred cEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEech------hhhccCCCCcccE
Q 011052 90 KTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD------VAARGLDIPNVDL 158 (494)
Q Consensus 90 ~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~------~~~~GiDip~v~~ 158 (494)
-.||.|||++.|.+|+...++ ++.++++||+++..++...|+. .+.|+|||+ |--.++|+..|++
T Consensus 298 i~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~----g~EivVaTPgRlid~VkmKatn~~rvS~ 373 (731)
T KOG0339|consen 298 IGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKE----GAEIVVATPGRLIDMVKMKATNLSRVSY 373 (731)
T ss_pred eEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhc----CCeEEEechHHHHHHHHhhcccceeeeE
Confidence 457889999999999877664 4789999999999999999985 889999998 5556788888887
Q ss_pred EEe--------cCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceecC----------------
Q 011052 159 IIH--------YELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS---------------- 214 (494)
Q Consensus 159 VI~--------~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~---------------- 214 (494)
+|. .++-..+.++.|.+ | ..-.|++|-.....+..+.....+...+..+.
T Consensus 374 LV~DEadrmfdmGfe~qVrSI~~hi----r--pdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V 447 (731)
T KOG0339|consen 374 LVLDEADRMFDMGFEPQVRSIKQHI----R--PDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSV 447 (731)
T ss_pred EEEechhhhhccccHHHHHHHHhhc----C--CcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeee
Confidence 662 22333455555554 1 13345555444443333333334443333221
Q ss_pred CCCHHHHHHHHHHHHHHHHccCCccchhhhhHHHHHHHhhcCHHHHHHHHHHHcC---------CCCCCCCcccccCCCC
Q 011052 215 PPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSG---------FSRPPSSRSLINHEQG 285 (494)
Q Consensus 215 ~p~~~~i~~~~~~~~~~~l~~~~~~~~~~f~~~a~~l~~~~~~~~l~aal~~~~g---------~~~~~~~rsl~~~~~~ 285 (494)
.|+.+.-+...+..+...+ ....+-.|.. ++.+.+.+++.| .+.+ .+|..++..|...+..
T Consensus 448 ~~s~~~Kl~wl~~~L~~f~---S~gkvlifVT------Kk~~~e~i~a~L-klk~~~v~llhgdkdqa~rn~~ls~fKkk 517 (731)
T KOG0339|consen 448 CPSEEKKLNWLLRHLVEFS---SEGKVLIFVT------KKADAEEIAANL-KLKGFNVSLLHGDKDQAERNEVLSKFKKK 517 (731)
T ss_pred ccCcHHHHHHHHHHhhhhc---cCCcEEEEEe------ccCCHHHHHHHh-ccccceeeeecCchhhHHHHHHHHHHhhc
Confidence 1222222222222221111 1111111110 111223333322 2222 2233334445556666
Q ss_pred ceEEEEecCCccccCccchhHHHHHhhhhcCcC----ccccccEEEeecCCcceeEE-ecCHHHHHHHHhhcCCCCCceE
Q 011052 286 WVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTA----ADEIGKIHIIADDRVQGAVF-DLPEEIAKELLNKQIPPGNTIS 360 (494)
Q Consensus 286 ~~t~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~----~~~ig~i~~~~~~~~~gs~~-d~~~~~~~~~~~~~~~~~~~l~ 360 (494)
..-+++++|. +++++++.+|..+|+.+.-.. ..-||+++++...+++=+++ +-..+.|-.|++.+...+. .
T Consensus 518 ~~~VlvatDv--aargldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~LVnnLe~agQ--n 593 (731)
T KOG0339|consen 518 RKPVLVATDV--AARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVNNLEGAGQ--N 593 (731)
T ss_pred CCceEEEeeH--hhcCCCccccceeecccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHHHHHHhhccc--c
Confidence 6778888888 688888888888887654211 12288998888876554444 4466677888877665554 3
Q ss_pred eeccCCCcCC
Q 011052 361 KITKLPALQD 370 (494)
Q Consensus 361 v~~~LP~~~~ 370 (494)
|+.+|-.|..
T Consensus 594 VP~~l~dlam 603 (731)
T KOG0339|consen 594 VPDELMDLAM 603 (731)
T ss_pred CChHHHHHHh
Confidence 4555555444
No 119
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.04 E-value=1.5e-09 Score=125.63 Aligned_cols=93 Identities=23% Similarity=0.429 Sum_probs=81.8
Q ss_pred CCcEEEEcCChhhHHHHHHHHhcc-------C---ceeeecCCCCHHHHHHHHccccCCCe-eEEEechhhhccCCCCcc
Q 011052 88 GGKTIVFTQTKRDADEVSLALTSI-------I---ASEALHGDISQHQRERTLNGFRQGKF-TVLVATDVAARGLDIPNV 156 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~~-------~---~~~~lhg~~~~~~R~~~l~~Fr~g~~-~iLVaT~~~~~GiDip~v 156 (494)
++|+||||.+++.|+.+++.|.+. + .+..+||+++ ++.+++++|+++.. +|+|+++++.+|+|+|.|
T Consensus 698 ~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v 775 (1123)
T PRK11448 698 EGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSI 775 (1123)
T ss_pred CCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccc
Confidence 379999999999999999887642 1 3567899876 46779999999876 699999999999999999
Q ss_pred cEEEecCCCCChhhHHHHhcccCCCC
Q 011052 157 DLIIHYELPNDPETFVHRSGRTGRAG 182 (494)
Q Consensus 157 ~~VI~~~~P~~~~~y~qr~GR~gR~G 182 (494)
.+||.+.++.+...|+||+||+.|.-
T Consensus 776 ~~vVf~rpvkS~~lf~QmIGRgtR~~ 801 (1123)
T PRK11448 776 CNLVFLRRVRSRILYEQMLGRATRLC 801 (1123)
T ss_pred cEEEEecCCCCHHHHHHHHhhhccCC
Confidence 99999999999999999999999953
No 120
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=98.94 E-value=1.6e-08 Score=113.65 Aligned_cols=104 Identities=25% Similarity=0.422 Sum_probs=86.0
Q ss_pred CcEEEEcCChhhHHHHHHHHhc----------c-------------------C-------------ceeeecCCCCHHHH
Q 011052 89 GKTIVFTQTKRDADEVSLALTS----------I-------------------I-------------ASEALHGDISQHQR 126 (494)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~----------~-------------------~-------------~~~~lhg~~~~~~R 126 (494)
-++|+||-++..|+..+..+.. . + .+.++|++|-+..+
T Consensus 380 lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K 459 (1041)
T COG4581 380 LPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIK 459 (1041)
T ss_pred CceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHH
Confidence 4899999999999988776641 1 1 13468999999999
Q ss_pred HHHHccccCCCeeEEEechhhhccCCCCcccEEE----ecC----CCCChhhHHHHhcccCCCC--CCceEEEecC
Q 011052 127 ERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII----HYE----LPNDPETFVHRSGRTGRAG--KEGTAILMFT 192 (494)
Q Consensus 127 ~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI----~~~----~P~~~~~y~qr~GR~gR~G--~~g~~i~l~~ 192 (494)
..+.+.|..|-++||+||.+++.|+|+|.-++|+ .+| -+-++..|+|++||+||.| ..|.+|++-.
T Consensus 460 ~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~ 535 (1041)
T COG4581 460 ELVEELFQEGLVKVVFATETFAIGINMPARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEP 535 (1041)
T ss_pred HHHHHHHhccceeEEeehhhhhhhcCCcccceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecC
Confidence 9999999999999999999999999999888776 222 3457899999999999998 5688888733
No 121
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.91 E-value=4.1e-08 Score=108.18 Aligned_cols=167 Identities=20% Similarity=0.192 Sum_probs=114.6
Q ss_pred cEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEE-EEEcCcccHHH-HHHHHHHHhccCCcEEEEcCChh
Q 011052 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLY-AISTTATSKRT-ILSDLITVYAKGGKTIVFTQTKR 99 (494)
Q Consensus 22 q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~-~~~~~~~~k~~-~L~~ll~~~~~~~~~IVF~~t~~ 99 (494)
.+.-||.|.-.+-.++.+.|--+ ++. ++ .+++.....+- .+......|.. ++..+...+.++.++||.|.|.+
T Consensus 363 kLsGMTGTA~te~~Ef~~iY~l~--Vv~-IP--TnkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe 437 (925)
T PRK12903 363 KLSGMTGTAKTEEQEFIDIYNMR--VNV-VP--TNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVE 437 (925)
T ss_pred hhhccCCCCHHHHHHHHHHhCCC--EEE-CC--CCCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHH
Confidence 45567788766666666655322 222 22 22221111111 12223334544 44556666677889999999999
Q ss_pred hHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCC---ccc-----EEEecCCCCChhh
Q 011052 100 DADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP---NVD-----LIIHYELPNDPET 170 (494)
Q Consensus 100 ~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip---~v~-----~VI~~~~P~~~~~ 170 (494)
.++.++..|.+ ++++.+|++. +.+++..+-.=.-..-.|.|||++|+||.||. .|. |||....|.+..-
T Consensus 438 ~SE~ls~~L~~~gi~h~vLNAk--~~e~EA~IIa~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRI 515 (925)
T PRK12903 438 DSETLHELLLEANIPHTVLNAK--QNAREAEIIAKAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRI 515 (925)
T ss_pred HHHHHHHHHHHCCCCceeeccc--chhhHHHHHHhCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHH
Confidence 99999999986 7888899886 34444433331122456999999999999994 232 8999999999988
Q ss_pred HHHHhcccCCCCCCceEEEecChhh
Q 011052 171 FVHRSGRTGRAGKEGTAILMFTSSQ 195 (494)
Q Consensus 171 y~qr~GR~gR~G~~g~~i~l~~~~e 195 (494)
--|-.||+||.|.+|.+.+|++-.|
T Consensus 516 DnQLrGRaGRQGDpGss~f~lSLeD 540 (925)
T PRK12903 516 DNQLRGRSGRQGDVGESRFFISLDD 540 (925)
T ss_pred HHHHhcccccCCCCCcceEEEecch
Confidence 8999999999999999988887655
No 122
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.90 E-value=3.4e-07 Score=99.58 Aligned_cols=105 Identities=17% Similarity=0.324 Sum_probs=86.4
Q ss_pred CCcEEEEcCChhhHHHHHHHHhc--------cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEE
Q 011052 88 GGKTIVFTQTKRDADEVSLALTS--------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~--------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~V 159 (494)
.+.++||.+--...-.|...|.. .+.+..+|+.++..++.++.+....+..++++.|.+++..+.+.++.+|
T Consensus 643 ~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~v 722 (1282)
T KOG0921|consen 643 DGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYV 722 (1282)
T ss_pred ccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEE
Confidence 46889999999988888877752 3678899999999999999999999999999999999999999998888
Q ss_pred EecCCC------------------CChhhHHHHhcccCCCCCCceEEEecCh
Q 011052 160 IHYELP------------------NDPETFVHRSGRTGRAGKEGTAILMFTS 193 (494)
Q Consensus 160 I~~~~P------------------~~~~~y~qr~GR~gR~G~~g~~i~l~~~ 193 (494)
|+.+.- .+.-..+||.||+||. ++|.|..++..
T Consensus 723 id~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~lcs~ 773 (1282)
T KOG0921|consen 723 IDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHLCSR 773 (1282)
T ss_pred EeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccccHH
Confidence 854421 2455669999999997 47888877653
No 123
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=98.87 E-value=2.3e-08 Score=108.68 Aligned_cols=168 Identities=18% Similarity=0.186 Sum_probs=117.6
Q ss_pred cEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHH-HHHHHHHHhccCCcEEEEcCChhh
Q 011052 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRT-ILSDLITVYAKGGKTIVFTQTKRD 100 (494)
Q Consensus 22 q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~-~L~~ll~~~~~~~~~IVF~~t~~~ 100 (494)
.+.-||.|...+..++.+.|--+ ++. ++...+....+.....+. ....|.. ++..+...+..+.++||.|.+.+.
T Consensus 364 kLsGMTGTa~t~~~Ef~~iY~l~--Vv~-IPtnkp~~R~d~~d~iy~-t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~ 439 (764)
T PRK12326 364 TVCGMTGTAVAAGEQLRQFYDLG--VSV-IPPNKPNIREDEADRVYA-TAAEKNDAIVEHIAEVHETGQPVLVGTHDVAE 439 (764)
T ss_pred hheeecCCChhHHHHHHHHhCCc--EEE-CCCCCCceeecCCCceEe-CHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHH
Confidence 46788999877777777666433 222 222222211222222222 2334544 445566666788999999999999
Q ss_pred HHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCC----------ccc-----EEEecCC
Q 011052 101 ADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP----------NVD-----LIIHYEL 164 (494)
Q Consensus 101 ~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip----------~v~-----~VI~~~~ 164 (494)
.+.++..|.+ ++++.+|++.-...+-+.+-+.=+ .-.|.|||++|.||.||. .|. |||-...
T Consensus 440 SE~ls~~L~~~gI~h~vLNAk~~~~EA~IIa~AG~--~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTer 517 (764)
T PRK12326 440 SEELAERLRAAGVPAVVLNAKNDAEEARIIAEAGK--YGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGR 517 (764)
T ss_pred HHHHHHHHHhCCCcceeeccCchHhHHHHHHhcCC--CCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccC
Confidence 9999999986 789999988733333222223322 345999999999999984 232 8999999
Q ss_pred CCChhhHHHHhcccCCCCCCceEEEecChhh
Q 011052 165 PNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 195 (494)
Q Consensus 165 P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e 195 (494)
|.+..--.|-.||+||.|.+|.+.+|++-.|
T Consensus 518 heSrRID~QLrGRaGRQGDpGss~f~lSleD 548 (764)
T PRK12326 518 HRSERLDNQLRGRAGRQGDPGSSVFFVSLED 548 (764)
T ss_pred CchHHHHHHHhcccccCCCCCceeEEEEcch
Confidence 9999999999999999999999999887665
No 124
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=98.86 E-value=8.7e-09 Score=106.93 Aligned_cols=157 Identities=19% Similarity=0.285 Sum_probs=104.1
Q ss_pred cCCCcEEEeccccccccccceEEEEE-EcCcccHHHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc--cCceeeec
Q 011052 42 LDNPLNIDLVGNQDEKLAEGIKLYAI-STTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS--IIASEALH 118 (494)
Q Consensus 42 l~~p~~i~~~~~~~~~~~~~i~~~~~-~~~~~~k~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~--~~~~~~lh 118 (494)
+.+|.+++++..--..+-+.++.+.+ ...+-...+.+..-++.+. ++.|||-. +++..-.+...+.+ ..++++++
T Consensus 311 CGepsvldlV~~i~k~TGd~vev~~YeRl~pL~v~~~~~~sl~nlk-~GDCvV~F-Skk~I~~~k~kIE~~g~~k~aVIY 388 (700)
T KOG0953|consen 311 CGEPSVLDLVRKILKMTGDDVEVREYERLSPLVVEETALGSLSNLK-PGDCVVAF-SKKDIFTVKKKIEKAGNHKCAVIY 388 (700)
T ss_pred cCCchHHHHHHHHHhhcCCeeEEEeecccCcceehhhhhhhhccCC-CCCeEEEe-ehhhHHHHHHHHHHhcCcceEEEe
Confidence 34566666654333334444444332 2222222233333344443 45555544 56667777777775 35699999
Q ss_pred CCCCHHHHHHHHccccC--CCeeEEEechhhhccCCCCcccEEEecCC---------CCChhhHHHHhcccCCCC---CC
Q 011052 119 GDISQHQRERTLNGFRQ--GKFTVLVATDVAARGLDIPNVDLIIHYEL---------PNDPETFVHRSGRTGRAG---KE 184 (494)
Q Consensus 119 g~~~~~~R~~~l~~Fr~--g~~~iLVaT~~~~~GiDip~v~~VI~~~~---------P~~~~~y~qr~GR~gR~G---~~ 184 (494)
|.+|++.|.+.-..|.+ ++++||||||++.+|+|+ +|+-||.|++ |-+..+..|-+|||||.| ..
T Consensus 389 GsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~ 467 (700)
T KOG0953|consen 389 GSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQ 467 (700)
T ss_pred cCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcC
Confidence 99999999999999987 899999999999999999 6788887764 456788899999999987 34
Q ss_pred ceEEEecChhhHHHHHHH
Q 011052 185 GTAILMFTSSQRRTVRSL 202 (494)
Q Consensus 185 g~~i~l~~~~e~~~l~~l 202 (494)
|.+.+|.. +|...++.+
T Consensus 468 G~vTtl~~-eDL~~L~~~ 484 (700)
T KOG0953|consen 468 GEVTTLHS-EDLKLLKRI 484 (700)
T ss_pred ceEEEeeH-hhHHHHHHH
Confidence 66665543 333333333
No 125
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=3.4e-09 Score=114.27 Aligned_cols=237 Identities=16% Similarity=0.222 Sum_probs=141.0
Q ss_pred EEEEcCChhhHHHHHHHHhc------cCceeeecCCCCHHHHHHHHccccCCCeeEEEech-----hhhcc-CCCCcccE
Q 011052 91 TIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARG-LDIPNVDL 158 (494)
Q Consensus 91 ~IVF~~t~~~~~~l~~~L~~------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~-----~~~~G-iDip~v~~ 158 (494)
+||++||++.|.++++.+.. .+.++.++|+++...+...++. + .+|||||| .+.++ +|+..+.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~---~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKR---G-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhc---C-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 99999999999999999873 3568999999999988877776 4 99999998 56666 88999998
Q ss_pred EEe--------cCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceecCCC--CH----HHHH--
Q 011052 159 IIH--------YELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP--VV----EDVL-- 222 (494)
Q Consensus 159 VI~--------~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~p--~~----~~i~-- 222 (494)
+|. +++..+++..+-.+-. .-...+|...... .+..+.+.+-.....+... .. ..+.
T Consensus 178 lVlDEADrmLd~Gf~~~i~~I~~~~p~------~~qtllfSAT~~~-~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~ 250 (513)
T COG0513 178 LVLDEADRMLDMGFIDDIEKILKALPP------DRQTLLFSATMPD-DIRELARRYLNDPVEIEVSVEKLERTLKKIKQF 250 (513)
T ss_pred EEeccHhhhhcCCCHHHHHHHHHhCCc------ccEEEEEecCCCH-HHHHHHHHHccCCcEEEEccccccccccCceEE
Confidence 882 3344444444444321 2233333322222 3555544433233222111 11 1000
Q ss_pred ------H-HHHHHHHHHHccCCccchhhhhHH---HHHHHhhcCHHHHHHHHHHHcCCCCCCCCcccccCCCCceEEEEe
Q 011052 223 ------E-SSAEQVVATLNGVHPESVEFFTPT---AQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLT 292 (494)
Q Consensus 223 ------~-~~~~~~~~~l~~~~~~~~~~f~~~---a~~l~~~~~~~~l~aal~~~~g~~~~~~~rsl~~~~~~~~t~~~~ 292 (494)
+ .....+...+.......+..|..+ ++++...+....+.++..|.. +++..+.+.+...+.+...++|+
T Consensus 251 ~~~v~~~~~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~-l~q~~R~~~l~~F~~g~~~vLVa 329 (513)
T COG0513 251 YLEVESEEEKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGD-LPQEERDRALEKFKDGELRVLVA 329 (513)
T ss_pred EEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCC-CCHHHHHHHHHHHHcCCCCEEEE
Confidence 0 122233333333333333333222 222111111111111111111 33333445556667889999999
Q ss_pred cCCccccCccchhHHHHHhhhhcCcCccc----cccEEEeecCCcceeEEecC
Q 011052 293 RDSAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDLP 341 (494)
Q Consensus 293 ~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~~d~~ 341 (494)
+|. +.++++.++|.++++++.|...++ ||+++++...+.+-+|+.-.
T Consensus 330 TDv--aaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~ 380 (513)
T COG0513 330 TDV--AARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEE 380 (513)
T ss_pred ech--hhccCCccccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcH
Confidence 999 789999999999999999977665 89999988877777888753
No 126
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=98.83 E-value=7.2e-08 Score=106.11 Aligned_cols=193 Identities=18% Similarity=0.307 Sum_probs=122.5
Q ss_pred HHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccH-----HHHHHHH
Q 011052 7 EEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSK-----RTILSDL 81 (494)
Q Consensus 7 ~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k-----~~~L~~l 81 (494)
..||-....+ ..++++||-|||..-+ .+...--.....+.+...........+............ ..++..+
T Consensus 337 ARdvA~~Ra~-~~~~pvvLgSATPSLE--S~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i 413 (730)
T COG1198 337 ARDVAVLRAK-KENAPVVLGSATPSLE--SYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAI 413 (730)
T ss_pred HHHHHHHHHH-HhCCCEEEecCCCCHH--HHHhhhcCceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHH
Confidence 3455433333 3689999999997544 333321122233444332222223334333333222222 3455555
Q ss_pred HHHhccCCcEEEEcCChh------------------------------------------------------------hH
Q 011052 82 ITVYAKGGKTIVFTQTKR------------------------------------------------------------DA 101 (494)
Q Consensus 82 l~~~~~~~~~IVF~~t~~------------------------------------------------------------~~ 101 (494)
-+.+..+.++|+|.|.|- -+
T Consensus 414 ~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~Gt 493 (730)
T COG1198 414 RKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGT 493 (730)
T ss_pred HHHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccH
Confidence 556677889999987654 44
Q ss_pred HHHHHHHhc---cCceeeecCCCCHHH--HHHHHccccCCCeeEEEechhhhccCCCCcccEEEecCC------CC----
Q 011052 102 DEVSLALTS---IIASEALHGDISQHQ--RERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYEL------PN---- 166 (494)
Q Consensus 102 ~~l~~~L~~---~~~~~~lhg~~~~~~--R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~~~~------P~---- 166 (494)
+.+.+.|.+ ..++..+.++.+... -+..++.|.+|+.+|||.|.+++.|.|+|++++|...|. |+
T Consensus 494 erieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~ 573 (730)
T COG1198 494 ERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRAS 573 (730)
T ss_pred HHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchH
Confidence 666666664 245667777765543 467899999999999999999999999999998764332 21
Q ss_pred --ChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHH
Q 011052 167 --DPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 202 (494)
Q Consensus 167 --~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~l 202 (494)
....+.|-+||+||.+++|.+++-....+...++.+
T Consensus 574 Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~hp~i~~~ 611 (730)
T COG1198 574 ERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDHPAIQAL 611 (730)
T ss_pred HHHHHHHHHHHhhhccCCCCCeEEEEeCCCCcHHHHHH
Confidence 345568999999999999999887655555555544
No 127
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=98.79 E-value=2.2e-07 Score=101.58 Aligned_cols=68 Identities=10% Similarity=0.199 Sum_probs=53.7
Q ss_pred CcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEech-----hhhc--cCCCCcc
Q 011052 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAAR--GLDIPNV 156 (494)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~-----~~~~--GiDip~v 156 (494)
.++||.|||++.|.++++.+.+ .+.+..+||+.+...+...++. ..+|||+|+ .+.. .+++..+
T Consensus 85 ~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~----~~dIiV~TP~rL~~~l~~~~~~~l~~v 160 (572)
T PRK04537 85 PRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQ----GVDVIIATPGRLIDYVKQHKVVSLHAC 160 (572)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhC----CCCEEEECHHHHHHHHHhccccchhhe
Confidence 5899999999999999988764 3678899999998887777654 678999997 2222 3667777
Q ss_pred cEEE
Q 011052 157 DLII 160 (494)
Q Consensus 157 ~~VI 160 (494)
.+||
T Consensus 161 ~~lV 164 (572)
T PRK04537 161 EICV 164 (572)
T ss_pred eeeE
Confidence 7766
No 128
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=98.79 E-value=9.9e-08 Score=105.43 Aligned_cols=131 Identities=25% Similarity=0.386 Sum_probs=94.6
Q ss_pred CCCcEEEEeecCChH--HHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHHHHHHhccCCcEEEEcC
Q 011052 19 PKRQSMLFSATMPSW--VKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQ 96 (494)
Q Consensus 19 ~~~q~ll~SATlp~~--i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IVF~~ 96 (494)
+.-+++..|||..+. -..+.+..+.- ++ + .......+|...|+.. .-.+.+..+++.+. .-.|||++
T Consensus 275 k~g~LvvsSATg~~rg~R~~LfReLlgF----ev-G-~~~~~LRNIvD~y~~~---~~~e~~~elvk~lG--~GgLIfV~ 343 (1187)
T COG1110 275 KLGILVVSSATGKPRGSRLKLFRELLGF----EV-G-SGGEGLRNIVDIYVES---ESLEKVVELVKKLG--DGGLIFVP 343 (1187)
T ss_pred CCceEEEeeccCCCCCchHHHHHHHhCC----cc-C-ccchhhhheeeeeccC---ccHHHHHHHHHHhC--CCeEEEEE
Confidence 456889999997432 22344444431 11 1 1223345666666655 33444556676663 47899999
Q ss_pred C---hhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEec----hhhhccCCCCc-ccEEEecCCC
Q 011052 97 T---KRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVAT----DVAARGLDIPN-VDLIIHYELP 165 (494)
Q Consensus 97 t---~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT----~~~~~GiDip~-v~~VI~~~~P 165 (494)
+ ++.+++|++.|+. ++.+..+|+. .++.++.|..|++++||.. .++-||||+|. +.++|.|+.|
T Consensus 344 ~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 344 IDYGREKAEELAEYLRSHGINAELIHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred cHHhHHHHHHHHHHHHhcCceEEEeecc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 9 9999999999996 7999999984 3788999999999999875 48999999996 6789988877
No 129
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=98.78 E-value=4.9e-08 Score=108.62 Aligned_cols=168 Identities=18% Similarity=0.164 Sum_probs=115.7
Q ss_pred cEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHH-HHHHHHHHhccCCcEEEEcCChhh
Q 011052 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRT-ILSDLITVYAKGGKTIVFTQTKRD 100 (494)
Q Consensus 22 q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~-~L~~ll~~~~~~~~~IVF~~t~~~ 100 (494)
++..||.|.-.+-.++.+.|--+ ++.+ +............. +......|.. ++..+...+..+.++||-|.+.+.
T Consensus 505 kl~GmTGTa~~e~~Ef~~iY~l~--v~~i-Pt~kp~~r~d~~d~-iy~t~~~k~~ai~~ei~~~~~~grPvLigt~si~~ 580 (970)
T PRK12899 505 KLAGMTGTAITESREFKEIYNLY--VLQV-PTFKPCLRIDHNDE-FYMTEREKYHAIVAEIASIHRKGNPILIGTESVEV 580 (970)
T ss_pred hhcccCCCCHHHHHHHHHHhCCC--EEEC-CCCCCceeeeCCCc-EecCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHH
Confidence 56678888866666666655322 2222 21111111111111 2233334544 556667777788899999999999
Q ss_pred HHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCC---ccc-----EEEecCCCCChhhH
Q 011052 101 ADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP---NVD-----LIIHYELPNDPETF 171 (494)
Q Consensus 101 ~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip---~v~-----~VI~~~~P~~~~~y 171 (494)
.+.++..|.+ +++..+|+..-...+-+-+-+.=+ .-.|.|||++|+||.||. .|. |||....|.+..--
T Consensus 581 se~ls~~L~~~gi~h~vLNak~~~~Ea~iia~AG~--~g~VTIATNmAGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid 658 (970)
T PRK12899 581 SEKLSRILRQNRIEHTVLNAKNHAQEAEIIAGAGK--LGAVTVATNMAGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRID 658 (970)
T ss_pred HHHHHHHHHHcCCcceecccchhhhHHHHHHhcCC--CCcEEEeeccccCCcccccCchHHhcCCcEEEeeccCchHHHH
Confidence 9999999985 788888888733223222223222 346999999999999993 333 89999999999999
Q ss_pred HHHhcccCCCCCCceEEEecChhh
Q 011052 172 VHRSGRTGRAGKEGTAILMFTSSQ 195 (494)
Q Consensus 172 ~qr~GR~gR~G~~g~~i~l~~~~e 195 (494)
.|-.||+||.|.+|.+.+|++-.|
T Consensus 659 ~Ql~GRagRQGdpGss~f~lSlED 682 (970)
T PRK12899 659 RQLRGRCARLGDPGAAKFFLSFED 682 (970)
T ss_pred HHHhcccccCCCCCceeEEEEcch
Confidence 999999999999999999887665
No 130
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.76 E-value=4.6e-08 Score=109.22 Aligned_cols=167 Identities=19% Similarity=0.189 Sum_probs=115.9
Q ss_pred EEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHH-HHHHHHHHHhccCCcEEEEcCChhhH
Q 011052 23 SMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKR-TILSDLITVYAKGGKTIVFTQTKRDA 101 (494)
Q Consensus 23 ~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~-~~L~~ll~~~~~~~~~IVF~~t~~~~ 101 (494)
+--||.|...+-.++.+.|--+ ++. ++........+.....+ .....|. .++..+...+..+.++||-|.|.+..
T Consensus 566 LsGMTGTA~tea~Ef~~IY~L~--Vv~-IPTnrP~~R~D~~D~vy-~t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~S 641 (1112)
T PRK12901 566 LAGMTGTAETEAGEFWDIYKLD--VVV-IPTNRPIARKDKEDLVY-KTKREKYNAVIEEITELSEAGRPVLVGTTSVEIS 641 (1112)
T ss_pred hcccCCCCHHHHHHHHHHhCCC--EEE-CCCCCCcceecCCCeEe-cCHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHH
Confidence 4467788777666666666333 222 22111111111111222 2333454 45566667777889999999999999
Q ss_pred HHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCC---cc-----cEEEecCCCCChhhHH
Q 011052 102 DEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP---NV-----DLIIHYELPNDPETFV 172 (494)
Q Consensus 102 ~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip---~v-----~~VI~~~~P~~~~~y~ 172 (494)
+.|+..|.. ++++.+|++.....+-+-+-++=+ .-.|-|||++|.||.||. .| -|||-...|.+..---
T Consensus 642 E~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~--~GaVTIATNMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~ 719 (1112)
T PRK12901 642 ELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQ--PGTVTIATNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDR 719 (1112)
T ss_pred HHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCC--CCcEEEeccCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHH
Confidence 999999985 788888888744444333334333 345899999999999994 33 3899999999999999
Q ss_pred HHhcccCCCCCCceEEEecChhh
Q 011052 173 HRSGRTGRAGKEGTAILMFTSSQ 195 (494)
Q Consensus 173 qr~GR~gR~G~~g~~i~l~~~~e 195 (494)
|-.||+||.|.+|.+.+|++-.|
T Consensus 720 QLrGRaGRQGDPGsS~f~lSLED 742 (1112)
T PRK12901 720 QLRGRAGRQGDPGSSQFYVSLED 742 (1112)
T ss_pred HHhcccccCCCCCcceEEEEccc
Confidence 99999999999999998887655
No 131
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=98.69 E-value=1e-07 Score=106.00 Aligned_cols=168 Identities=20% Similarity=0.198 Sum_probs=115.5
Q ss_pred cEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHH-HHHHHHHHhccCCcEEEEcCChhh
Q 011052 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRT-ILSDLITVYAKGGKTIVFTQTKRD 100 (494)
Q Consensus 22 q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~-~L~~ll~~~~~~~~~IVF~~t~~~ 100 (494)
.+.-||.|...+-.++.+.|--+ ++. ++..............+ .....|.. ++..+...+..+.++||-|.|.+.
T Consensus 386 kLsGMTGTa~te~~Ef~~iY~l~--Vv~-IPTnkP~~R~D~~d~vy-~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~ 461 (913)
T PRK13103 386 KLSGMTGTADTEAFEFRQIYGLD--VVV-IPPNKPLARKDFNDLVY-LTAEEKYAAIITDIKECMALGRPVLVGTATIET 461 (913)
T ss_pred hhccCCCCCHHHHHHHHHHhCCC--EEE-CCCCCCcccccCCCeEE-cCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHH
Confidence 45667888877766676666332 222 22222222222222222 23344554 445666666778999999999999
Q ss_pred HHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCC-------------------------
Q 011052 101 ADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP------------------------- 154 (494)
Q Consensus 101 ~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip------------------------- 154 (494)
.+.++..|.+ +++..+|+..-...+-+-+-+.=+ .-.|.|||++|.||.||.
T Consensus 462 SE~ls~~L~~~gi~h~VLNAk~~~~EA~IIa~AG~--~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~ 539 (913)
T PRK13103 462 SEHMSNLLKKEGIEHKVLNAKYHEKEAEIIAQAGR--PGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKA 539 (913)
T ss_pred HHHHHHHHHHcCCcHHHhccccchhHHHHHHcCCC--CCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHH
Confidence 9999999986 788888887643333333333322 345999999999999993
Q ss_pred -------ccc-----EEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhh
Q 011052 155 -------NVD-----LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 195 (494)
Q Consensus 155 -------~v~-----~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e 195 (494)
.|. |||-...|.+..---|-.||+||.|.+|.+.+|++-.|
T Consensus 540 ~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED 592 (913)
T PRK13103 540 DWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 592 (913)
T ss_pred HHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCc
Confidence 222 78888899999999999999999999999999887654
No 132
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.65 E-value=1.1e-07 Score=95.48 Aligned_cols=266 Identities=12% Similarity=0.151 Sum_probs=151.8
Q ss_pred CCcEEEEcCChhhHHHHHHHHh----ccCceeeecCCCCHHHHHHHHccccCCCeeEEEech------hhhccCCCCccc
Q 011052 88 GGKTIVFTQTKRDADEVSLALT----SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATD------VAARGLDIPNVD 157 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~----~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~------~~~~GiDip~v~ 157 (494)
...+||+++|++.+.++..+.. +++...+++|+-...++.+.+++ ...|++||+ ...--||+..|+
T Consensus 294 ~p~~lvl~ptreLalqie~e~~kysyng~ksvc~ygggnR~eqie~lkr----gveiiiatPgrlndL~~~n~i~l~siT 369 (629)
T KOG0336|consen 294 GPGVLVLTPTRELALQIEGEVKKYSYNGLKSVCVYGGGNRNEQIEDLKR----GVEIIIATPGRLNDLQMDNVINLASIT 369 (629)
T ss_pred CCceEEEeccHHHHHHHHhHHhHhhhcCcceEEEecCCCchhHHHHHhc----CceEEeeCCchHhhhhhcCeeeeeeeE
Confidence 4578999999999998876665 35788889998888888888777 889999998 233446677777
Q ss_pred EEEe------cCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHh-CCCcee----------------cC
Q 011052 158 LIIH------YELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDV-GCKFEF----------------VS 214 (494)
Q Consensus 158 ~VI~------~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~-~~~~~~----------------~~ 214 (494)
++|. .|+-..+ .+-++==-= ++-...++.+..-..-++.|...+ +..+.. +.
T Consensus 370 YlVlDEADrMLDMgFEp--qIrkilldi---RPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~ 444 (629)
T KOG0336|consen 370 YLVLDEADRMLDMGFEP--QIRKILLDI---RPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNII 444 (629)
T ss_pred EEEecchhhhhcccccH--HHHHHhhhc---CCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEE
Confidence 7663 2221111 111110000 123333444443334455554333 221110 11
Q ss_pred CCCHHHHHHHHHHHHHHHHccCCccchhhhh--HHHHHHHhhcCHHHHHHHHHHHcCCCCCCCCcccccCCCCceEEEEe
Q 011052 215 PPVVEDVLESSAEQVVATLNGVHPESVEFFT--PTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLT 292 (494)
Q Consensus 215 ~p~~~~i~~~~~~~~~~~l~~~~~~~~~~f~--~~a~~l~~~~~~~~l~aal~~~~g~~~~~~~rsl~~~~~~~~t~~~~ 292 (494)
.++..+-+ .....+.+.+.+ +...+.+.. -.|+.|-..+.-..+.+.-+|.. ..|..+++.+...+.|.++++++
T Consensus 445 v~~d~~k~-~~~~~f~~~ms~-ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~-r~Q~DrE~al~~~ksG~vrILva 521 (629)
T KOG0336|consen 445 VTTDSEKL-EIVQFFVANMSS-NDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGN-REQSDREMALEDFKSGEVRILVA 521 (629)
T ss_pred ecccHHHH-HHHHHHHHhcCC-CceEEEEEechhhhhhccchhhhcccchhhccCC-hhhhhHHHHHHhhhcCceEEEEE
Confidence 12222221 111111111111 111122211 11222222222222222222222 23445556677788999999999
Q ss_pred cCCccccCccchhHHHHHhhhhcCcCccc----cccEEEeecCCcceeEEecC-HHHHHHHHhhcCCCCCceEeeccCCC
Q 011052 293 RDSAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDLP-EEIAKELLNKQIPPGNTISKITKLPA 367 (494)
Q Consensus 293 ~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~~d~~-~~~~~~~~~~~~~~~~~l~v~~~LP~ 367 (494)
+|. +.++++..||.|+++++.|..-++ +|+++.+.+.+.+.+|+.-+ -..++++|+.+..++. +|+++|-.
T Consensus 522 TDl--aSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~ILe~aeQ--evPdeL~~ 597 (629)
T KOG0336|consen 522 TDL--ASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQILERAEQ--EVPDELVR 597 (629)
T ss_pred ech--hhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHHHHHHhhh--hCcHHHHH
Confidence 998 788999999999999999877665 89998888877667888764 5577888887766554 34555544
Q ss_pred cC
Q 011052 368 LQ 369 (494)
Q Consensus 368 ~~ 369 (494)
+.
T Consensus 598 mA 599 (629)
T KOG0336|consen 598 MA 599 (629)
T ss_pred HH
Confidence 33
No 133
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=98.58 E-value=8.5e-07 Score=101.51 Aligned_cols=106 Identities=21% Similarity=0.278 Sum_probs=76.1
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhcc---CceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCccc--EEEe
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTSI---IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD--LIIH 161 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~~---~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~--~VI~ 161 (494)
..+++|||+++.+..+.+++.|... .....+..+.. ..|.+++++|++++..||++|+.+.+|||+|+.. +||.
T Consensus 673 ~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI 751 (850)
T TIGR01407 673 TSPKILVLFTSYEMLHMVYDMLNELPEFEGYEVLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVI 751 (850)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHhhhccccCceEEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEE
Confidence 3579999999999999999998741 11223333333 5788999999999999999999999999999766 4555
Q ss_pred cCCCC----Ch--------------------------hhHHHHhcccCCCCCCceEEEecCh
Q 011052 162 YELPN----DP--------------------------ETFVHRSGRTGRAGKEGTAILMFTS 193 (494)
Q Consensus 162 ~~~P~----~~--------------------------~~y~qr~GR~gR~G~~g~~i~l~~~ 193 (494)
..+|. ++ ..+.|.+||.=|....--++++++.
T Consensus 752 ~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~ 813 (850)
T TIGR01407 752 PRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDR 813 (850)
T ss_pred eCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEcc
Confidence 55552 11 2237888999887644334444443
No 134
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=98.53 E-value=5.8e-07 Score=89.85 Aligned_cols=54 Identities=13% Similarity=0.175 Sum_probs=44.2
Q ss_pred CCcEEEEcCChhhHHHHHHHHhcc-----------CceeeecCCCCHHHHHHHHccccCCCeeEEEech
Q 011052 88 GGKTIVFTQTKRDADEVSLALTSI-----------IASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~~-----------~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~ 145 (494)
+.-.||.||+++.|.+.++.+... +.+..--|+++-.++..++.+ .+.|+|||+
T Consensus 246 GP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~----GvHivVATP 310 (610)
T KOG0341|consen 246 GPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRR----GVHIVVATP 310 (610)
T ss_pred CCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhc----CeeEEEcCc
Confidence 456799999999999988877532 344555699999999999888 899999998
No 135
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.52 E-value=2.9e-07 Score=92.17 Aligned_cols=248 Identities=15% Similarity=0.168 Sum_probs=153.4
Q ss_pred HHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEech----
Q 011052 75 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD---- 145 (494)
Q Consensus 75 ~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~---- 145 (494)
+.+|..++..- +...++|.+||++.|.+|++.+.. ++.++++-|+|....+...+.+ +..|||||+
T Consensus 117 LPIl~~LL~~p-~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~k----kPhilVaTPGrL~ 191 (476)
T KOG0330|consen 117 LPILQRLLQEP-KLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSK----KPHILVATPGRLW 191 (476)
T ss_pred HHHHHHHHcCC-CCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhc----CCCEEEeCcHHHH
Confidence 34555666532 346899999999999999988763 5789999999998877766666 788999998
Q ss_pred --hh-hccCCCCcccEEE--------ecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceecC
Q 011052 146 --VA-ARGLDIPNVDLII--------HYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 214 (494)
Q Consensus 146 --~~-~~GiDip~v~~VI--------~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~ 214 (494)
+- ..|+.+..+.+.| +.|+-...+.++-.+- ...-.++++..-...+++|++..-..+..+.
T Consensus 192 dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ip-------~erqt~LfsATMt~kv~kL~rasl~~p~~v~ 264 (476)
T KOG0330|consen 192 DHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDYILKVIP-------RERQTFLFSATMTKKVRKLQRASLDNPVKVA 264 (476)
T ss_pred HHHHhccCccHHHhHHHhhchHHhhhhhhhHHHHHHHHHhcC-------ccceEEEEEeecchhhHHHHhhccCCCeEEe
Confidence 22 5777777776655 5556556666666653 2333455555555667777766666666665
Q ss_pred CCCHHHHHHHHHHHHHHHHccCCccchhhhh-HHHHHH--------HhhcCHHHHHHHHHHHcCCCCCC---------CC
Q 011052 215 PPVVEDVLESSAEQVVATLNGVHPESVEFFT-PTAQRL--------IEEKGTDALAAALAQLSGFSRPP---------SS 276 (494)
Q Consensus 215 ~p~~~~i~~~~~~~~~~~l~~~~~~~~~~f~-~~a~~l--------~~~~~~~~l~aal~~~~g~~~~~---------~~ 276 (494)
.++.-..+....+.. .-+....-..+. ....++ ..........+.++...|+...+ +.
T Consensus 265 ~s~ky~tv~~lkQ~y----lfv~~k~K~~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rl 340 (476)
T KOG0330|consen 265 VSSKYQTVDHLKQTY----LFVPGKDKDTYLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRL 340 (476)
T ss_pred ccchhcchHHhhhhe----EeccccccchhHHHHHHhhcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHH
Confidence 554433332221111 111111111110 001111 11223445666666666654322 22
Q ss_pred cccccCCCCceEEEEecCCccccCccchhHHHHHhhhhcCcCccc----cccEEEeecCCcceeEEec
Q 011052 277 RSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDL 340 (494)
Q Consensus 277 rsl~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~~d~ 340 (494)
-++...+.+...+++.+|. +.+++|...+..+||++.|....| +|++.++++.+.+.++|.-
T Consensus 341 g~l~~Fk~~~r~iLv~TDV--aSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtq 406 (476)
T KOG0330|consen 341 GALNKFKAGARSILVCTDV--ASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQ 406 (476)
T ss_pred HHHHHHhccCCcEEEecch--hcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEeh
Confidence 2445567777888888888 788888888888888888876666 6888877776655566654
No 136
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.51 E-value=2.8e-06 Score=94.32 Aligned_cols=125 Identities=18% Similarity=0.161 Sum_probs=79.8
Q ss_pred cEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEE-EEEcCcccHHH-HHHHHHHHhccCCcEEEEcCChh
Q 011052 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLY-AISTTATSKRT-ILSDLITVYAKGGKTIVFTQTKR 99 (494)
Q Consensus 22 q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~-~~~~~~~~k~~-~L~~ll~~~~~~~~~IVF~~t~~ 99 (494)
.+..||.|.-.+-.++.+.|--+ ++. ++ .+++.....+- .+......|.. ++..+...+..+.++||-|.|.+
T Consensus 361 kL~GMTGTa~te~~Ef~~iY~l~--vv~-IP--tnkp~~R~d~~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe 435 (870)
T CHL00122 361 KLSGMTGTAKTEELEFEKIYNLE--VVC-IP--THRPMLRKDLPDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIE 435 (870)
T ss_pred hhcccCCCCHHHHHHHHHHhCCC--EEE-CC--CCCCccceeCCCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHH
Confidence 46677888876666666655322 222 22 22222222221 12223334544 55666777778899999999999
Q ss_pred hHHHHHHHHhc-cCceeeecCCCC--HHHHHHHHccccCCCeeEEEechhhhccCCC
Q 011052 100 DADEVSLALTS-IIASEALHGDIS--QHQRERTLNGFRQGKFTVLVATDVAARGLDI 153 (494)
Q Consensus 100 ~~~~l~~~L~~-~~~~~~lhg~~~--~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDi 153 (494)
..+.++..|.+ ++++.+|++.-. ..+-+-+-++ -..-.|.|||++|+||.||
T Consensus 436 ~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~A--G~~G~VTIATNMAGRGTDI 490 (870)
T CHL00122 436 KSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQA--GRKGSITIATNMAGRGTDI 490 (870)
T ss_pred HHHHHHHHHHHcCCccceeeCCCccchhHHHHHHhc--CCCCcEEEeccccCCCcCe
Confidence 99999999986 888999998632 2333323232 2244699999999999998
No 137
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=98.45 E-value=1.2e-06 Score=94.29 Aligned_cols=135 Identities=21% Similarity=0.374 Sum_probs=111.7
Q ss_pred ccHHHHHHHHHHHh-ccCCcEEEEcCChhhHHHHHHHHh-ccCceeeecCCCCHHHHHHHHccccCC---CeeEEEechh
Q 011052 72 TSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQG---KFTVLVATDV 146 (494)
Q Consensus 72 ~~k~~~L~~ll~~~-~~~~~~IVF~~t~~~~~~l~~~L~-~~~~~~~lhg~~~~~~R~~~l~~Fr~g---~~~iLVaT~~ 146 (494)
..|+.+|..+|..+ ..+.+||||..-....+.+.++.. ++|..+-+.|.++.++|...++.|... ..-.|++|-+
T Consensus 470 SGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRA 549 (971)
T KOG0385|consen 470 SGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRA 549 (971)
T ss_pred CcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccc
Confidence 46788888888665 457799999999998888888876 578999999999999999999999764 4568899999
Q ss_pred hhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEE--ecChh--hHHHHHHHHHHh
Q 011052 147 AARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAIL--MFTSS--QRRTVRSLERDV 206 (494)
Q Consensus 147 ~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~--l~~~~--e~~~l~~le~~~ 206 (494)
...|||+...+.||.||-.|+|..-+|..-||.|.|++..+.+ |++.. |...+++-+..+
T Consensus 550 GGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~KL 613 (971)
T KOG0385|consen 550 GGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAAKL 613 (971)
T ss_pred cccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999997665555 55544 344455444444
No 138
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=98.44 E-value=1.2e-05 Score=84.07 Aligned_cols=181 Identities=17% Similarity=0.219 Sum_probs=134.4
Q ss_pred CcEEEEeecCChHHHHHHHHHcCCCc-EEEeccccc-----cccccceEEEEEEcCccc-------HHH-----HHHHHH
Q 011052 21 RQSMLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQD-----EKLAEGIKLYAISTTATS-------KRT-----ILSDLI 82 (494)
Q Consensus 21 ~q~ll~SATlp~~i~~l~~~~l~~p~-~i~~~~~~~-----~~~~~~i~~~~~~~~~~~-------k~~-----~L~~ll 82 (494)
+|+|+||+.+.+++..+...++.|.. .+.+..... ..+...++|.+...+..+ +.+ +|..+.
T Consensus 216 RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~iLP~l~ 295 (442)
T PF06862_consen 216 RQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKKILPQLK 295 (442)
T ss_pred eEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHHHHHHhh
Confidence 69999999999999999998777643 333332222 234455667666543322 221 233333
Q ss_pred HHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEech--hhhccCCCCcccEE
Q 011052 83 TVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD--VAARGLDIPNVDLI 159 (494)
Q Consensus 83 ~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~--~~~~GiDip~v~~V 159 (494)
. -.....+|||+|+--+=-.|...|++ .+....+|--.++.+-.++-..|.+|+.+||+.|. ..-+-..|.+|.+|
T Consensus 296 ~-~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irGi~~v 374 (442)
T PF06862_consen 296 R-DSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIRGIRHV 374 (442)
T ss_pred h-ccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecCCcEE
Confidence 2 12457999999999999999999985 68888899999999999999999999999999997 44566678899999
Q ss_pred EecCCCCChhhHHHHhcccCCCC------CCceEEEecChhhHHHHHHH
Q 011052 160 IHYELPNDPETFVHRSGRTGRAG------KEGTAILMFTSSQRRTVRSL 202 (494)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~G------~~g~~i~l~~~~e~~~l~~l 202 (494)
|-|.+|..+.-|...+.-..... ....|.++++..|.-.|+.|
T Consensus 375 iFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErI 423 (442)
T PF06862_consen 375 IFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERI 423 (442)
T ss_pred EEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHH
Confidence 99999999999977775544433 25789999999887665555
No 139
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=98.42 E-value=1.3e-06 Score=98.09 Aligned_cols=121 Identities=20% Similarity=0.377 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHhcc-CCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccC---CCeeEEEechhhh
Q 011052 74 KRTILSDLITVYAK-GGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQ---GKFTVLVATDVAA 148 (494)
Q Consensus 74 k~~~L~~ll~~~~~-~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~---g~~~iLVaT~~~~ 148 (494)
|+-+|..||..+.. +.+||||.......+.|+++|.. +|+..-|.|.+..+.|..+++.|.. ..+..|+||-+.+
T Consensus 684 KlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGG 763 (1373)
T KOG0384|consen 684 KLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGG 763 (1373)
T ss_pred cEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCc
Confidence 44455666666644 47999999999999999999984 8999999999999999999999975 4678999999999
Q ss_pred ccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCce--EEEecChh
Q 011052 149 RGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGT--AILMFTSS 194 (494)
Q Consensus 149 ~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~--~i~l~~~~ 194 (494)
.|||+-..+.||.||--|+|..-+|...||.|.|++-. +|-|++..
T Consensus 764 LGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~ 811 (1373)
T KOG0384|consen 764 LGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKN 811 (1373)
T ss_pred ccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCC
Confidence 99999999999999999999999999999999996654 45567654
No 140
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=98.42 E-value=8.9e-07 Score=91.72 Aligned_cols=55 Identities=18% Similarity=0.245 Sum_probs=45.3
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEech
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~ 145 (494)
.+..+||..+|++.+++|.+.-.+ ++.+..+-|+++-+++---+.. .|.|+|||+
T Consensus 321 ~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~----gceiviatP 380 (673)
T KOG0333|consen 321 EGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSM----GCEIVIATP 380 (673)
T ss_pred cCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhc----cceeeecCc
Confidence 356899999999999999887653 4788889999998887545554 789999998
No 141
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=98.38 E-value=2.7e-06 Score=91.99 Aligned_cols=118 Identities=19% Similarity=0.381 Sum_probs=104.5
Q ss_pred ccHHHHHHHHHHHh-ccCCcEEEEcCChhhHHHHHHHHh--ccCceeeecCCCCHHHHHHHHccccCCC--eeEEEechh
Q 011052 72 TSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALT--SIIASEALHGDISQHQRERTLNGFRQGK--FTVLVATDV 146 (494)
Q Consensus 72 ~~k~~~L~~ll~~~-~~~~~~IVF~~t~~~~~~l~~~L~--~~~~~~~lhg~~~~~~R~~~l~~Fr~g~--~~iLVaT~~ 146 (494)
.-|+++|..++... ..+.++|+|..|+...+.|...|. +++..+-+.|..+...|..++++|.++. .-.|++|.|
T Consensus 529 sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrv 608 (923)
T KOG0387|consen 529 SGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRV 608 (923)
T ss_pred cchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecc
Confidence 45888888888665 456799999999999999999998 4899999999999999999999999765 336899999
Q ss_pred hhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEE
Q 011052 147 AARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAIL 189 (494)
Q Consensus 147 ~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~ 189 (494)
..-|+|+-..+-||.||+-|+|.+-.|..-|+-|.|++-.+++
T Consensus 609 GGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~V 651 (923)
T KOG0387|consen 609 GGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVV 651 (923)
T ss_pred cccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEE
Confidence 9999999999999999999999999999999999997655544
No 142
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=98.35 E-value=6.3e-07 Score=70.79 Aligned_cols=61 Identities=21% Similarity=0.401 Sum_probs=48.9
Q ss_pred eEEEEecCCccccCccchhHHHHHhhhhcCcCccccccEEEeecCCcceeEEecCHHHHHHHHhhcCC
Q 011052 287 VTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIP 354 (494)
Q Consensus 287 ~t~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~ig~i~~~~~~~~~gs~~d~~~~~~~~~~~~~~~ 354 (494)
|+++++.++ +++++|++|.++|+...++..++||+|.+.+++ |||++|++.++++++.+..
T Consensus 1 vrl~in~Gr---~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~~----S~vev~~~~a~~v~~~l~~ 61 (74)
T PF03880_consen 1 VRLFINVGR---KDGLTPRDIVGAICNEAGIPGRDIGRIDIFDNF----SFVEVPEEVAEKVLEALNG 61 (74)
T ss_dssp -EEEES-SG---GGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS-----EEEEE-TT-HHHHHHHHTT
T ss_pred CEEEEEccc---ccCCCHHHHHHHHHhccCCCHHhEEEEEEeeeE----EEEEECHHHHHHHHHHhcC
Confidence 588999998 899999999999999999999999999999999 7999999999999998764
No 143
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=98.29 E-value=5.8e-07 Score=99.13 Aligned_cols=69 Identities=23% Similarity=0.253 Sum_probs=54.4
Q ss_pred CCcEEEEcCChhhHHHHHHHHhc------cCceeeecCCCCHHHHHHHHccccCCCeeEEEech-----hhhc-cCCCCc
Q 011052 88 GGKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAAR-GLDIPN 155 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~-----~~~~-GiDip~ 155 (494)
..++||.|||++.|.++++.+.. .+.+..+||+.+...+.+.++. ..+|+|+|+ .+.+ .+++.+
T Consensus 74 ~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~----~~~IVVgTPgrl~d~l~r~~l~l~~ 149 (629)
T PRK11634 74 APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ----GPQIVVGTPGRLLDHLKRGTLDLSK 149 (629)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcC----CCCEEEECHHHHHHHHHcCCcchhh
Confidence 35899999999999999888763 4678899999988877776654 678999996 3333 367888
Q ss_pred ccEEE
Q 011052 156 VDLII 160 (494)
Q Consensus 156 v~~VI 160 (494)
+.+||
T Consensus 150 l~~lV 154 (629)
T PRK11634 150 LSGLV 154 (629)
T ss_pred ceEEE
Confidence 88877
No 144
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.27 E-value=2.1e-06 Score=88.79 Aligned_cols=111 Identities=14% Similarity=0.211 Sum_probs=76.4
Q ss_pred CcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEech-------hhhccCCCCcc
Q 011052 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-------VAARGLDIPNV 156 (494)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~-------~~~~GiDip~v 156 (494)
.++||.|||++.+-+++...++ .+.++..-|+|+-..++.+|.. ..+|+|||| --+.+.|+.++
T Consensus 253 TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs----~PDIVIATPGRlIDHlrNs~sf~ldsi 328 (691)
T KOG0338|consen 253 TRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRS----RPDIVIATPGRLIDHLRNSPSFNLDSI 328 (691)
T ss_pred eeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhh----CCCEEEecchhHHHHhccCCCccccce
Confidence 4899999999999998887663 3677888899999999999988 789999998 23445666777
Q ss_pred cEEEecCCCC--------ChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCc
Q 011052 157 DLIIHYELPN--------DPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 210 (494)
Q Consensus 157 ~~VI~~~~P~--------~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~ 210 (494)
.++|.-.... ....+++.| .+....++++..-...++.|....-.++
T Consensus 329 EVLvlDEADRMLeegFademnEii~lc-------pk~RQTmLFSATMteeVkdL~slSL~kP 383 (691)
T KOG0338|consen 329 EVLVLDEADRMLEEGFADEMNEIIRLC-------PKNRQTMLFSATMTEEVKDLASLSLNKP 383 (691)
T ss_pred eEEEechHHHHHHHHHHHHHHHHHHhc-------cccccceeehhhhHHHHHHHHHhhcCCC
Confidence 7666433332 233334444 2334455666666666666666543333
No 145
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=98.27 E-value=5.3e-06 Score=91.33 Aligned_cols=119 Identities=18% Similarity=0.261 Sum_probs=90.9
Q ss_pred ccHHHHHHHHHHHhcc--CCcEEEEcCChhhHHHHHHHHh-ccCceeeecCCCCHHHHHHHHccccCCC---eeEEEech
Q 011052 72 TSKRTILSDLITVYAK--GGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGK---FTVLVATD 145 (494)
Q Consensus 72 ~~k~~~L~~ll~~~~~--~~~~IVF~~t~~~~~~l~~~L~-~~~~~~~lhg~~~~~~R~~~l~~Fr~g~---~~iLVaT~ 145 (494)
..|+..|..++..... ..++++..|.+...+.+....+ +++.++.|||.|+..+|+.+++.|.+-. .-.|.+|-
T Consensus 577 s~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsK 656 (776)
T KOG0390|consen 577 SGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSK 656 (776)
T ss_pred hhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecc
Confidence 3456666666543311 1234444455554444444443 3789999999999999999999998733 44677889
Q ss_pred hhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEe
Q 011052 146 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILM 190 (494)
Q Consensus 146 ~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l 190 (494)
+.+.||++-..+.||.||++|+|+.-.|.+.|+-|.|++-.|+++
T Consensus 657 Agg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iY 701 (776)
T KOG0390|consen 657 AGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIY 701 (776)
T ss_pred cccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEE
Confidence 999999999999999999999999999999999999988888774
No 146
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.22 E-value=8.6e-06 Score=90.56 Aligned_cols=127 Identities=17% Similarity=0.149 Sum_probs=79.1
Q ss_pred cEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHH-HHHHHHHHhccCCcEEEEcCChhh
Q 011052 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRT-ILSDLITVYAKGGKTIVFTQTKRD 100 (494)
Q Consensus 22 q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~-~L~~ll~~~~~~~~~IVF~~t~~~ 100 (494)
.+.-||.|.-.+-.++.+.|--+ ++.+ +...........-.. ......|.. ++.++...+..+.++||-|.|.+.
T Consensus 376 kLsGMTGTa~te~~Ef~~iY~l~--Vv~I-PTnkP~~R~d~~d~v-y~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~ 451 (939)
T PRK12902 376 KLAGMTGTAKTEEVEFEKTYKLE--VTVI-PTNRPRRRQDWPDQV-YKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEK 451 (939)
T ss_pred hhcccCCCCHHHHHHHHHHhCCc--EEEc-CCCCCeeeecCCCeE-EcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHH
Confidence 55677888766666666666332 2222 111111111111112 223335554 445666667788999999999999
Q ss_pred HHHHHHHHhc-cCceeeecCCCCHHHHHH-HHccccCCCeeEEEechhhhccCCC
Q 011052 101 ADEVSLALTS-IIASEALHGDISQHQRER-TLNGFRQGKFTVLVATDVAARGLDI 153 (494)
Q Consensus 101 ~~~l~~~L~~-~~~~~~lhg~~~~~~R~~-~l~~Fr~g~~~iLVaT~~~~~GiDi 153 (494)
.+.++..|.+ ++++.+|+..-.+.+++. ++.. .-..-.|.|||++|.||.||
T Consensus 452 SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~-AG~~GaVTIATNMAGRGTDI 505 (939)
T PRK12902 452 SELLSALLQEQGIPHNLLNAKPENVEREAEIVAQ-AGRKGAVTIATNMAGRGTDI 505 (939)
T ss_pred HHHHHHHHHHcCCchheeeCCCcchHhHHHHHHh-cCCCCcEEEeccCCCCCcCE
Confidence 9999999986 888888988632323333 3322 22234599999999999998
No 147
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=98.20 E-value=1.1e-05 Score=90.03 Aligned_cols=122 Identities=20% Similarity=0.336 Sum_probs=101.3
Q ss_pred ccHHHHHHHHHHHh-ccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCC--eeEEEechhh
Q 011052 72 TSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGK--FTVLVATDVA 147 (494)
Q Consensus 72 ~~k~~~L~~ll~~~-~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~--~~iLVaT~~~ 147 (494)
..|++.|.-||..+ ..+.+||||+....+.+-|..+|.- ++..+-|.|....++|+..+++|.... +..|++|-.-
T Consensus 1259 cGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSg 1338 (1958)
T KOG0391|consen 1259 CGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSG 1338 (1958)
T ss_pred cchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCC
Confidence 46777777777665 4567999999999999999999984 677888999999999999999998654 5678899999
Q ss_pred hccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceE--EEecCh
Q 011052 148 ARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTA--ILMFTS 193 (494)
Q Consensus 148 ~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~--i~l~~~ 193 (494)
..|||+-..+.||.||--|++..-.|.--||.|.|++-.+ |-|++.
T Consensus 1339 gvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe 1386 (1958)
T KOG0391|consen 1339 GVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISE 1386 (1958)
T ss_pred ccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeecc
Confidence 9999999999999999999998888877788887755444 445554
No 148
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.20 E-value=7.1e-06 Score=92.24 Aligned_cols=118 Identities=21% Similarity=0.342 Sum_probs=99.7
Q ss_pred ccHHHHHHHHHHHhc---------------cCCcEEEEcCChhhHHHHHHHHhcc----CceeeecCCCCHHHHHHHHcc
Q 011052 72 TSKRTILSDLITVYA---------------KGGKTIVFTQTKRDADEVSLALTSI----IASEALHGDISQHQRERTLNG 132 (494)
Q Consensus 72 ~~k~~~L~~ll~~~~---------------~~~~~IVF~~t~~~~~~l~~~L~~~----~~~~~lhg~~~~~~R~~~l~~ 132 (494)
..|+.+|.++|.... ...++||||.-+...+.+.+.|.+. +....|.|..++.+|.++.++
T Consensus 1309 spKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~ 1388 (1549)
T KOG0392|consen 1309 SPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVER 1388 (1549)
T ss_pred chhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHH
Confidence 357788888876541 2358999999999999999888752 334578999999999999999
Q ss_pred ccCC-CeeEE-EechhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEE
Q 011052 133 FRQG-KFTVL-VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAIL 189 (494)
Q Consensus 133 Fr~g-~~~iL-VaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~ 189 (494)
|.++ .++|| ++|.|.+-|+|+...+.||.++--|++..-+|..-||.|.|++-++-+
T Consensus 1389 FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNV 1447 (1549)
T KOG0392|consen 1389 FNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNV 1447 (1549)
T ss_pred hcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeee
Confidence 9998 77766 678999999999999999999999999999999999999997765443
No 149
>PTZ00110 helicase; Provisional
Probab=98.19 E-value=7.5e-07 Score=96.98 Aligned_cols=251 Identities=15% Similarity=0.202 Sum_probs=127.9
Q ss_pred CcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEech-----hhhcc-CCCCccc
Q 011052 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARG-LDIPNVD 157 (494)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~-----~~~~G-iDip~v~ 157 (494)
..+||.|||++.|.++++.+.+ .+.+.+++|+.+...+...+.. .++|||+|+ .+..+ +++..++
T Consensus 204 p~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~----~~~IlVaTPgrL~d~l~~~~~~l~~v~ 279 (545)
T PTZ00110 204 PIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRR----GVEILIACPGRLIDFLESNVTNLRRVT 279 (545)
T ss_pred cEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHc----CCCEEEECHHHHHHHHHcCCCChhhCc
Confidence 4689999999999999988874 3678889999988777666654 678999997 33333 6677888
Q ss_pred EEEe--cCC--CCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHH-hCCCceec-----CCCCH---------
Q 011052 158 LIIH--YEL--PNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERD-VGCKFEFV-----SPPVV--------- 218 (494)
Q Consensus 158 ~VI~--~~~--P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~-~~~~~~~~-----~~p~~--------- 218 (494)
+||. .|. -...+..+.++-..-+ ...-+++++.+-...++.+.+. +......+ .....
T Consensus 280 ~lViDEAd~mld~gf~~~i~~il~~~~---~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~ 356 (545)
T PTZ00110 280 YLVLDEADRMLDMGFEPQIRKIVSQIR---PDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFV 356 (545)
T ss_pred EEEeehHHhhhhcchHHHHHHHHHhCC---CCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEE
Confidence 7773 221 1111111222211112 2222333332211222222222 11111100 00000
Q ss_pred --HHHHHHHHHHHHHHHccCCccchhhhhHHHHHHHhhcCHHHHHHHHHHHcCCC---------CCCCCcccccCCCCce
Q 011052 219 --EDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFS---------RPPSSRSLINHEQGWV 287 (494)
Q Consensus 219 --~~i~~~~~~~~~~~l~~~~~~~~~~f~~~a~~l~~~~~~~~l~aal~~~~g~~---------~~~~~rsl~~~~~~~~ 287 (494)
+......+..++..+.. ....+-.|....+ ..+.++..|. ..++. +..+...+...+.+.+
T Consensus 357 ~~~~~k~~~L~~ll~~~~~-~~~k~LIF~~t~~------~a~~l~~~L~-~~g~~~~~ihg~~~~~eR~~il~~F~~G~~ 428 (545)
T PTZ00110 357 VEEHEKRGKLKMLLQRIMR-DGDKILIFVETKK------GADFLTKELR-LDGWPALCIHGDKKQEERTWVLNEFKTGKS 428 (545)
T ss_pred EechhHHHHHHHHHHHhcc-cCCeEEEEecChH------HHHHHHHHHH-HcCCcEEEEECCCcHHHHHHHHHHHhcCCC
Confidence 00011112222222221 1111222211100 0122222221 12221 1111122334556777
Q ss_pred EEEEecCCccccCccchhHHHHHhhhhcCcCccc----cccEEEeecCCcceeEEecC-HHHHHHHHhhcCCCC
Q 011052 288 TLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDLP-EEIAKELLNKQIPPG 356 (494)
Q Consensus 288 t~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~~d~~-~~~~~~~~~~~~~~~ 356 (494)
.++|+++. +..++|.++|..+|+...|...++ +||+++....+.+-+||+-. ...+.++++.+...+
T Consensus 429 ~ILVaTdv--~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~l~~~~ 500 (545)
T PTZ00110 429 PIMIATDV--ASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKVLREAK 500 (545)
T ss_pred cEEEEcch--hhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHHHHHcc
Confidence 88999987 678899999999998887766554 78888776665555777654 345666666655544
No 150
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=98.15 E-value=3.5e-06 Score=89.29 Aligned_cols=264 Identities=15% Similarity=0.157 Sum_probs=133.0
Q ss_pred CcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechh------hhccCCCCccc
Q 011052 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV------AARGLDIPNVD 157 (494)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~------~~~GiDip~v~ 157 (494)
.++||.+||++.|.++++.+.. .+.+..++|+.+...+..++.. ..+|||||+- ....+++.+++
T Consensus 74 ~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~----~~~IlV~Tp~rl~~~~~~~~~~~~~v~ 149 (434)
T PRK11192 74 PRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSE----NQDIVVATPGRLLQYIKEENFDCRAVE 149 (434)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcC----CCCEEEEChHHHHHHHHcCCcCcccCC
Confidence 5899999999999999887653 4678899999998888777754 6789999982 23456778888
Q ss_pred EEEecC----CCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceec-CCCCHHH------------
Q 011052 158 LIIHYE----LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFV-SPPVVED------------ 220 (494)
Q Consensus 158 ~VI~~~----~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~-~~p~~~~------------ 220 (494)
+||.=+ +.......+.++-..-+. ....++|-.......+..+.+.+......+ ..+...+
T Consensus 150 ~lViDEah~~l~~~~~~~~~~i~~~~~~--~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~ 227 (434)
T PRK11192 150 TLILDEADRMLDMGFAQDIETIAAETRW--RKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRAD 227 (434)
T ss_pred EEEEECHHHHhCCCcHHHHHHHHHhCcc--ccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeC
Confidence 777322 222222333333221111 112233322223334444444443222111 1111000
Q ss_pred HHHHHHHHHHHHHccCCccchhhhhHHHHHHHhhcCHHHHHHHHHHHcCC---------CCCCCCcccccCCCCceEEEE
Q 011052 221 VLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGF---------SRPPSSRSLINHEQGWVTLQL 291 (494)
Q Consensus 221 i~~~~~~~~~~~l~~~~~~~~~~f~~~a~~l~~~~~~~~l~aal~~~~g~---------~~~~~~rsl~~~~~~~~t~~~ 291 (494)
-.+.....+...+........-.|....+ ..+.++..|.. .++ ++..+...+...+.|.+.++|
T Consensus 228 ~~~~k~~~l~~l~~~~~~~~~lVF~~s~~------~~~~l~~~L~~-~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLV 300 (434)
T PRK11192 228 DLEHKTALLCHLLKQPEVTRSIVFVRTRE------RVHELAGWLRK-AGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLV 300 (434)
T ss_pred CHHHHHHHHHHHHhcCCCCeEEEEeCChH------HHHHHHHHHHh-CCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEE
Confidence 01111112222222212222222211100 01122222221 111 111112223345677889999
Q ss_pred ecCCccccCccchhHHHHHhhhhcCcCccc----cccEEEeecCCcceeEEecCHHHHHHHHhhcCCCCCceEeeccCCC
Q 011052 292 TRDSAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPA 367 (494)
Q Consensus 292 ~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~~d~~~~~~~~~~~~~~~~~~~l~v~~~LP~ 367 (494)
+++. +..++|.+++..+|+...+...++ +||+++....+.+-++++..+.....-++.+....+...+++.+++
T Consensus 301 aTd~--~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~~~~~~~~~~~~~ 378 (434)
T PRK11192 301 ATDV--AARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIEEPLKARVIDELRP 378 (434)
T ss_pred Eccc--cccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHhccccccccccccc
Confidence 9987 678899999999998877765444 6777776555444456655443333333333333332233444443
No 151
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=98.10 E-value=7.9e-06 Score=86.31 Aligned_cols=69 Identities=10% Similarity=0.193 Sum_probs=52.8
Q ss_pred CcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechh-----h-hccCCCCccc
Q 011052 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----A-ARGLDIPNVD 157 (494)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~-----~-~~GiDip~v~ 157 (494)
.++||.+||++.|.++++.+.. ++.+..++|+.+...+...++. ..+|||+|+- + ..-+++.++.
T Consensus 84 ~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~----~~~IlV~TP~~l~~~l~~~~~~l~~v~ 159 (423)
T PRK04837 84 PRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLES----GVDILIGTTGRLIDYAKQNHINLGAIQ 159 (423)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcC----CCCEEEECHHHHHHHHHcCCccccccc
Confidence 5799999999999999877652 4678889999887766665543 6789999982 2 2346778888
Q ss_pred EEEe
Q 011052 158 LIIH 161 (494)
Q Consensus 158 ~VI~ 161 (494)
+||.
T Consensus 160 ~lVi 163 (423)
T PRK04837 160 VVVL 163 (423)
T ss_pred EEEE
Confidence 8773
No 152
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=98.06 E-value=8.7e-06 Score=86.98 Aligned_cols=238 Identities=14% Similarity=0.200 Sum_probs=124.9
Q ss_pred CcEEEEcCChhhHHHHHHHHhc------cCceeeecCCCCHHHHHHHHccccCCCeeEEEech-----hhh-ccCCCCcc
Q 011052 89 GKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAA-RGLDIPNV 156 (494)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~-----~~~-~GiDip~v 156 (494)
.++||.|||++.|.++++.++. .+.+..++|+.+...+...++. ..+|+|+|+ .+. ..+++.++
T Consensus 73 ~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~----~~~IvV~Tp~rl~~~l~~~~~~l~~l 148 (460)
T PRK11776 73 VQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEH----GAHIIVGTPGRILDHLRKGTLDLDAL 148 (460)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcC----CCCEEEEChHHHHHHHHcCCccHHHC
Confidence 3799999999999999988763 3678889999999887776663 788999996 333 35778888
Q ss_pred cEEEecCC--------CCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHh-CCCcee-c-------------
Q 011052 157 DLIIHYEL--------PNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDV-GCKFEF-V------------- 213 (494)
Q Consensus 157 ~~VI~~~~--------P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~-~~~~~~-~------------- 213 (494)
.+||.-+. -.+....++.. ....-+++++.+-...+..+.+.. ...... +
T Consensus 149 ~~lViDEad~~l~~g~~~~l~~i~~~~-------~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~i~~~~ 221 (460)
T PRK11776 149 NTLVLDEADRMLDMGFQDAIDAIIRQA-------PARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTHDLPAIEQRF 221 (460)
T ss_pred CEEEEECHHHHhCcCcHHHHHHHHHhC-------CcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCCCCCCeeEEE
Confidence 88873221 11122222222 112223333332223333333332 221111 0
Q ss_pred -CCCCHHHHHHHHHHHHHHHHccCCccchhhhhHHHHHHHhhcCHHHHHHHHHHHcC---------CCCCCCCcccccCC
Q 011052 214 -SPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSG---------FSRPPSSRSLINHE 283 (494)
Q Consensus 214 -~~p~~~~i~~~~~~~~~~~l~~~~~~~~~~f~~~a~~l~~~~~~~~l~aal~~~~g---------~~~~~~~rsl~~~~ 283 (494)
..+. .+ ....+...+....+...-.|..+.+ ..+.++..|.. .+ +++..+.+.+...+
T Consensus 222 ~~~~~-~~----k~~~l~~ll~~~~~~~~lVF~~t~~------~~~~l~~~L~~-~~~~v~~~hg~~~~~eR~~~l~~F~ 289 (460)
T PRK11776 222 YEVSP-DE----RLPALQRLLLHHQPESCVVFCNTKK------ECQEVADALNA-QGFSALALHGDLEQRDRDQVLVRFA 289 (460)
T ss_pred EEeCc-HH----HHHHHHHHHHhcCCCceEEEECCHH------HHHHHHHHHHh-CCCcEEEEeCCCCHHHHHHHHHHHH
Confidence 0111 11 1122222222222222222211100 01122222211 11 11111222334456
Q ss_pred CCceEEEEecCCccccCccchhHHHHHhhhhcCcCccc----cccEEEeecCCcceeEEecCHHHHHHHHhh
Q 011052 284 QGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDLPEEIAKELLNK 351 (494)
Q Consensus 284 ~~~~t~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~~d~~~~~~~~~~~~ 351 (494)
.+...++|+++. +..++|.+++..+|+...|...+. +||+++....+.+-+++...+......++.
T Consensus 290 ~g~~~vLVaTdv--~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~ 359 (460)
T PRK11776 290 NRSCSVLVATDV--AARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIED 359 (460)
T ss_pred cCCCcEEEEecc--cccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHH
Confidence 677889999987 688899999999998887765443 788887766554445555544333333443
No 153
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.06 E-value=5.7e-05 Score=87.23 Aligned_cols=79 Identities=22% Similarity=0.288 Sum_probs=61.4
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhccCc---eeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCc--ccEEEe
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTSIIA---SEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPN--VDLIIH 161 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~~~~---~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~--v~~VI~ 161 (494)
.++++|||+++.+..+.+++.|..... ...+.-+++...|.+++++|+.++-.||++|..+.+|||+|+ +++||.
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI 830 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVI 830 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEE
Confidence 457999999999999999999975321 222332444456788999999888889999999999999986 467876
Q ss_pred cCCC
Q 011052 162 YELP 165 (494)
Q Consensus 162 ~~~P 165 (494)
..+|
T Consensus 831 ~kLP 834 (928)
T PRK08074 831 VRLP 834 (928)
T ss_pred ecCC
Confidence 6655
No 154
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=97.87 E-value=8.6e-05 Score=82.23 Aligned_cols=82 Identities=28% Similarity=0.459 Sum_probs=70.1
Q ss_pred eeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEecC-CCCChhhHHHHhcccCCCC--CCceEEEe
Q 011052 114 SEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYE-LPNDPETFVHRSGRTGRAG--KEGTAILM 190 (494)
Q Consensus 114 ~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~~~-~P~~~~~y~qr~GR~gR~G--~~g~~i~l 190 (494)
+-++|++|...+|..+.--||.|...||+||..++-|||+|.-++|.--| +--++-.|.|++|||||.| ..|.++.+
T Consensus 965 iG~HHaglNr~yR~~VEvLFR~g~L~VlfaT~TLsLGiNMPCrTVvF~gDsLQL~plny~QmaGRAGRRGFD~lGnV~Fm 1044 (1330)
T KOG0949|consen 965 IGVHHAGLNRKYRSLVEVLFRQGHLQVLFATETLSLGINMPCRTVVFAGDSLQLDPLNYKQMAGRAGRRGFDTLGNVVFM 1044 (1330)
T ss_pred ccccccccchHHHHHHHHHhhcCceEEEEEeeehhcccCCCceeEEEeccccccCchhHHhhhccccccccccccceEEE
Confidence 34689999999999999999999999999999999999999888777655 4568889999999999998 45777776
Q ss_pred cChhh
Q 011052 191 FTSSQ 195 (494)
Q Consensus 191 ~~~~e 195 (494)
--|..
T Consensus 1045 giP~~ 1049 (1330)
T KOG0949|consen 1045 GIPRQ 1049 (1330)
T ss_pred eCcHH
Confidence 55543
No 155
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=97.85 E-value=0.00034 Score=78.16 Aligned_cols=94 Identities=21% Similarity=0.253 Sum_probs=69.9
Q ss_pred CCcEEEEcCChhhHHHHHHHHhccCc--eeeecCCCCHHHHHHHHccccCCCe-eEEEechhhhccCCCCcc--cEEEec
Q 011052 88 GGKTIVFTQTKRDADEVSLALTSIIA--SEALHGDISQHQRERTLNGFRQGKF-TVLVATDVAARGLDIPNV--DLIIHY 162 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~~~~--~~~lhg~~~~~~R~~~l~~Fr~g~~-~iLVaT~~~~~GiDip~v--~~VI~~ 162 (494)
++++|||+++.+..+.+++.+..... ....++..+ +...+++|+...- -++|+|..+++|||+|+- ..||..
T Consensus 479 ~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI~ 555 (654)
T COG1199 479 PGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVIV 555 (654)
T ss_pred CCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEEE
Confidence 46999999999999999999986432 445555543 4478888876554 899999999999999854 667766
Q ss_pred CCCCC------------------------------hhhHHHHhcccCCCCCC
Q 011052 163 ELPND------------------------------PETFVHRSGRTGRAGKE 184 (494)
Q Consensus 163 ~~P~~------------------------------~~~y~qr~GR~gR~G~~ 184 (494)
.+|.. .....|.+||.=|.-..
T Consensus 556 ~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D 607 (654)
T COG1199 556 GLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDD 607 (654)
T ss_pred ecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCC
Confidence 66531 23348999999995433
No 156
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=97.84 E-value=0.00014 Score=82.79 Aligned_cols=77 Identities=16% Similarity=0.154 Sum_probs=57.3
Q ss_pred ccCCcEEEEcCChhhHHHHHHHHhcc-CceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCc--ccEEEec
Q 011052 86 AKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPN--VDLIIHY 162 (494)
Q Consensus 86 ~~~~~~IVF~~t~~~~~~l~~~L~~~-~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~--v~~VI~~ 162 (494)
..+++++|++++.+..+.+++.|... +.+ ...|.-. .+.+++++|+++.-.||++|..+.+|||+|. ...||..
T Consensus 645 ~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI~ 721 (820)
T PRK07246 645 QLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVIT 721 (820)
T ss_pred hcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEEe
Confidence 34689999999999999999998742 333 3334221 2456899999988889999999999999973 4455554
Q ss_pred CCC
Q 011052 163 ELP 165 (494)
Q Consensus 163 ~~P 165 (494)
.+|
T Consensus 722 kLP 724 (820)
T PRK07246 722 RLP 724 (820)
T ss_pred cCC
Confidence 444
No 157
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=97.83 E-value=9.1e-05 Score=85.00 Aligned_cols=118 Identities=19% Similarity=0.304 Sum_probs=102.1
Q ss_pred cHHHHHHHHH-HH-hccCC--cEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCC--CeeEEEech
Q 011052 73 SKRTILSDLI-TV-YAKGG--KTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQG--KFTVLVATD 145 (494)
Q Consensus 73 ~k~~~L~~ll-~~-~~~~~--~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g--~~~iLVaT~ 145 (494)
.|...+.+++ .. ..... ++|||++.....+.+...+.. .+..+.++|.++.++|...+++|.++ ..-++++|.
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~k 771 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLK 771 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEec
Confidence 6777777777 33 34445 899999999999999999986 46899999999999999999999985 456778889
Q ss_pred hhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEe
Q 011052 146 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILM 190 (494)
Q Consensus 146 ~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l 190 (494)
+...|+|+-..++||+||..|++....|...|+.|.|++..+.++
T Consensus 772 agg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~ 816 (866)
T COG0553 772 AGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVY 816 (866)
T ss_pred ccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEE
Confidence 999999999999999999999999999999999999977665553
No 158
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=97.80 E-value=0.00012 Score=81.43 Aligned_cols=124 Identities=19% Similarity=0.300 Sum_probs=107.6
Q ss_pred cccHHHHHHHHHHHhc-cCCcEEEEcCChhhHHHHHHHHh-ccCceeeecCCCCHHHHHHHHccccCCC---eeEEEech
Q 011052 71 ATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGK---FTVLVATD 145 (494)
Q Consensus 71 ~~~k~~~L~~ll~~~~-~~~~~IVF~~t~~~~~~l~~~L~-~~~~~~~lhg~~~~~~R~~~l~~Fr~g~---~~iLVaT~ 145 (494)
...|.++|..++..+. .++++|.||......+.+..+|. +.+...-+.|.....+|-..++.|..-. ...|.+|-
T Consensus 708 ~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~Fllstr 787 (1157)
T KOG0386|consen 708 VSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTR 787 (1157)
T ss_pred hccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeec
Confidence 4578999999987763 46899999999999999999998 4788889999999999999999998643 55789999
Q ss_pred hhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChh
Q 011052 146 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSS 194 (494)
Q Consensus 146 ~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~ 194 (494)
....|+|+...+.||.||.-|++....|+--|+.|.|..-.+-++....
T Consensus 788 agglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~t 836 (1157)
T KOG0386|consen 788 AGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLIT 836 (1157)
T ss_pred ccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeeh
Confidence 9999999999999999999999999999999999999777666654433
No 159
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=97.80 E-value=0.00033 Score=78.55 Aligned_cols=76 Identities=26% Similarity=0.435 Sum_probs=57.4
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhccC-ceeeecCCCCHHHHHHHHcccc----CCCeeEEEechhhhccCCCCc--ccEE
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTSII-ASEALHGDISQHQRERTLNGFR----QGKFTVLVATDVAARGLDIPN--VDLI 159 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~~~-~~~~lhg~~~~~~R~~~l~~Fr----~g~~~iLVaT~~~~~GiDip~--v~~V 159 (494)
..+.+|||+++.+..+++++.|.... .....++. ..+.++++.|+ .++..||++|..+.+|||+|+ +++|
T Consensus 533 ~~gg~LVlFtSy~~l~~v~~~l~~~~~~~ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~v 609 (697)
T PRK11747 533 KHKGSLVLFASRRQMQKVADLLPRDLRLMLLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQV 609 (697)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHhcCCcEEEeCC---chHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEE
Confidence 45679999999999999999987422 22344554 24667786666 466779999999999999986 6788
Q ss_pred EecCCC
Q 011052 160 IHYELP 165 (494)
Q Consensus 160 I~~~~P 165 (494)
|...+|
T Consensus 610 II~kLP 615 (697)
T PRK11747 610 IITKIP 615 (697)
T ss_pred EEEcCC
Confidence 876655
No 160
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=97.79 E-value=8.5e-05 Score=80.70 Aligned_cols=122 Identities=20% Similarity=0.334 Sum_probs=103.1
Q ss_pred cHHHHHHHHHHHhcc-CCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCC--eeEEEechhhh
Q 011052 73 SKRTILSDLITVYAK-GGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGK--FTVLVATDVAA 148 (494)
Q Consensus 73 ~k~~~L~~ll~~~~~-~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~--~~iLVaT~~~~ 148 (494)
.|...|..+|....+ +.++|||..-....+.|...|.. .+...-|.|...-..|+.+++.|...+ .-.|++|-+.+
T Consensus 761 gK~r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG 840 (941)
T KOG0389|consen 761 GKCRKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGG 840 (941)
T ss_pred hhHhHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCc
Confidence 467778888877644 57999999999998888888874 788899999999999999999998654 45789999999
Q ss_pred ccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCce--EEEecChh
Q 011052 149 RGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGT--AILMFTSS 194 (494)
Q Consensus 149 ~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~--~i~l~~~~ 194 (494)
-|||+-..++||.+|+..+|-.-.|.--||.|.|++-. ++.|++..
T Consensus 841 ~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~ 888 (941)
T KOG0389|consen 841 FGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKS 888 (941)
T ss_pred ceecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecC
Confidence 99999999999999999999999999999999996544 44456554
No 161
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=97.79 E-value=0.0002 Score=79.85 Aligned_cols=93 Identities=18% Similarity=0.212 Sum_probs=73.2
Q ss_pred CCcEEEEcCChhhHHHHHHHHhcc------CceeeecCCCCHH---------------------HHHHHHccccC-CCee
Q 011052 88 GGKTIVFTQTKRDADEVSLALTSI------IASEALHGDISQH---------------------QRERTLNGFRQ-GKFT 139 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~~------~~~~~lhg~~~~~---------------------~R~~~l~~Fr~-g~~~ 139 (494)
..+++|||.++..|..+++.|.+. ...+++++..+.. ....++++|++ +..+
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ 593 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPK 593 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCce
Confidence 479999999999999999888642 2344555543322 22468889976 6789
Q ss_pred EEEechhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCC
Q 011052 140 VLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRA 181 (494)
Q Consensus 140 iLVaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~ 181 (494)
|||++|++..|.|.|.+++++..-+-.+. .++|.+||+.|.
T Consensus 594 ilIVvdmllTGFDaP~l~tLyldKplk~h-~LlQai~R~nR~ 634 (667)
T TIGR00348 594 LLIVVDMLLTGFDAPILNTLYLDKPLKYH-GLLQAIARTNRI 634 (667)
T ss_pred EEEEEcccccccCCCccceEEEecccccc-HHHHHHHHhccc
Confidence 99999999999999999988877766654 589999999994
No 162
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=97.79 E-value=0.00011 Score=76.28 Aligned_cols=106 Identities=25% Similarity=0.352 Sum_probs=85.4
Q ss_pred cHHHHHHHHHHHhc-cCCcEEEEcCChhhHHHHHHHHhccCceeeecCCCCHHHHHHHHccccC-CCeeEEEechhhhcc
Q 011052 73 SKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQ-GKFTVLVATDVAARG 150 (494)
Q Consensus 73 ~k~~~L~~ll~~~~-~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~lhg~~~~~~R~~~l~~Fr~-g~~~iLVaT~~~~~G 150 (494)
.|..+..-|++.+. .+.++|||....-...+.+-.|.+ -.++|..+|.+|.++++.|+- ..++-+.-+.|....
T Consensus 527 ~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~K----pfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtS 602 (776)
T KOG1123|consen 527 NKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLGK----PFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDTS 602 (776)
T ss_pred chhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcCC----ceEECCCchhHHHHHHHhcccCCccceEEEeeccCcc
Confidence 45666666776663 467999999888777777666654 358999999999999999985 467888889999999
Q ss_pred CCCCcccEEEecCCC-CChhhHHHHhcccCCCC
Q 011052 151 LDIPNVDLIIHYELP-NDPETFVHRSGRTGRAG 182 (494)
Q Consensus 151 iDip~v~~VI~~~~P-~~~~~y~qr~GR~gR~G 182 (494)
+|+|..+++|+.... -+..+-.||.||.-|+.
T Consensus 603 iDLPEAnvLIQISSH~GSRRQEAQRLGRILRAK 635 (776)
T KOG1123|consen 603 IDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 635 (776)
T ss_pred ccCCcccEEEEEcccccchHHHHHHHHHHHHHh
Confidence 999999999986544 46677789999988875
No 163
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=97.77 E-value=0.00018 Score=81.45 Aligned_cols=89 Identities=17% Similarity=0.160 Sum_probs=65.3
Q ss_pred EEEcCChhhHHHHHHHHhc-------cCceeeecCCCCHHHHHHHHccc----------------------cC----CCe
Q 011052 92 IVFTQTKRDADEVSLALTS-------IIASEALHGDISQHQRERTLNGF----------------------RQ----GKF 138 (494)
Q Consensus 92 IVF~~t~~~~~~l~~~L~~-------~~~~~~lhg~~~~~~R~~~l~~F----------------------r~----g~~ 138 (494)
+|-+++++.+-.++..|.. .+.++++|+..+...|..+.+.. ++ +..
T Consensus 760 liR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~ 839 (1110)
T TIGR02562 760 LIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHL 839 (1110)
T ss_pred EEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCC
Confidence 6667777777777777752 24578899998777775544332 11 356
Q ss_pred eEEEechhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCC
Q 011052 139 TVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGK 183 (494)
Q Consensus 139 ~iLVaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~ 183 (494)
.|+|||++++.|+|+. .+++|- -|.+..+.+|++||+.|.+.
T Consensus 840 ~i~v~Tqv~E~g~D~d-fd~~~~--~~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 840 FIVLATPVEEVGRDHD-YDWAIA--DPSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred eEEEEeeeEEEEeccc-CCeeee--ccCcHHHHHHHhhccccccc
Confidence 7999999999999983 444443 36789999999999999873
No 164
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.77 E-value=0.00012 Score=75.75 Aligned_cols=121 Identities=19% Similarity=0.249 Sum_probs=96.6
Q ss_pred cHHHHHHHHHHHh---ccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCC-CeeE-EEechh
Q 011052 73 SKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQG-KFTV-LVATDV 146 (494)
Q Consensus 73 ~k~~~L~~ll~~~---~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g-~~~i-LVaT~~ 146 (494)
.|.++|..-|..+ ...-+.|||..-....+.|.-.|.+ ++.|+-|.|+|++.+|..+++.|++. .+.| ||+-.+
T Consensus 620 TKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkA 699 (791)
T KOG1002|consen 620 TKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKA 699 (791)
T ss_pred hHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEecc
Confidence 4566655444333 2234889999999999999999987 89999999999999999999999875 4554 566677
Q ss_pred hhccCCCCcccEEEecCCCCChhhHHHHhcccCCCC--CCceEEEecCh
Q 011052 147 AARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAG--KEGTAILMFTS 193 (494)
Q Consensus 147 ~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G--~~g~~i~l~~~ 193 (494)
...-+|+-...+|+.+|+-|++.--.|.-.|..|.| ++-.++.|+-+
T Consensus 700 GGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iE 748 (791)
T KOG1002|consen 700 GGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIE 748 (791)
T ss_pred CceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehh
Confidence 777899999999999999999999999888888888 34455556543
No 165
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=97.75 E-value=9e-05 Score=76.70 Aligned_cols=104 Identities=19% Similarity=0.378 Sum_probs=89.6
Q ss_pred ccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCC-CeeE-EEechhhhccCCCCcccEEEec
Q 011052 86 AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQG-KFTV-LVATDVAARGLDIPNVDLIIHY 162 (494)
Q Consensus 86 ~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g-~~~i-LVaT~~~~~GiDip~v~~VI~~ 162 (494)
.+..|.+|||.-....+.|...+.+ ++...-+.|..+...|....+.|... ++.| +++-.++..||++...+.||..
T Consensus 490 ~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFa 569 (689)
T KOG1000|consen 490 APPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFA 569 (689)
T ss_pred CCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEE
Confidence 3567999999999999999999985 78899999999999999999999764 3443 3455688999999999999999
Q ss_pred CCCCChhhHHHHhcccCCCCCCceEEE
Q 011052 163 ELPNDPETFVHRSGRTGRAGKEGTAIL 189 (494)
Q Consensus 163 ~~P~~~~~y~qr~GR~gR~G~~g~~i~ 189 (494)
.+|+++.-++|.--|+.|.|++..+.+
T Consensus 570 EL~wnPgvLlQAEDRaHRiGQkssV~v 596 (689)
T KOG1000|consen 570 ELHWNPGVLLQAEDRAHRIGQKSSVFV 596 (689)
T ss_pred EecCCCceEEechhhhhhccccceeeE
Confidence 999999999999999999997755444
No 166
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=97.73 E-value=6.5e-05 Score=84.02 Aligned_cols=244 Identities=13% Similarity=0.180 Sum_probs=129.0
Q ss_pred CcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCC----------
Q 011052 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDI---------- 153 (494)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDi---------- 153 (494)
.-+||.|||++.+.+|.+.++. .+.+++.+|+....++...+++ ...|+|||+ .|.||+
T Consensus 439 Pi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkR----g~eIvV~tp--GRmiD~l~~n~grvtn 512 (997)
T KOG0334|consen 439 PIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKR----GAEIVVCTP--GRMIDILCANSGRVTN 512 (997)
T ss_pred ceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhc----CCceEEecc--chhhhhHhhcCCcccc
Confidence 4579999999999999998874 4788999999988888777766 488999998 344443
Q ss_pred -CcccEEEe------cC--CCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceec-----------
Q 011052 154 -PNVDLIIH------YE--LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFV----------- 213 (494)
Q Consensus 154 -p~v~~VI~------~~--~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~----------- 213 (494)
-.+++|+. +| +-.....++|.+ |+-| -.++++.+....+..+.+..-.++..+
T Consensus 513 lrR~t~lv~deaDrmfdmgfePq~~~Ii~nl-rpdr------QtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~ 585 (997)
T KOG0334|consen 513 LRRVTYLVLDEADRMFDMGFEPQITRILQNL-RPDR------QTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKE 585 (997)
T ss_pred ccccceeeechhhhhheeccCcccchHHhhc-chhh------hhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEecc
Confidence 34445551 22 222333378877 4333 234444444444666655442222111
Q ss_pred ------CCCCHHHHHHHHHHHHHHHHccC--Cccchhhhh--HHHHHHHhhcCHHHHHHHHHHHcCCCCCCCCcccccCC
Q 011052 214 ------SPPVVEDVLESSAEQVVATLNGV--HPESVEFFT--PTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHE 283 (494)
Q Consensus 214 ------~~p~~~~i~~~~~~~~~~~l~~~--~~~~~~~f~--~~a~~l~~~~~~~~l~aal~~~~g~~~~~~~rsl~~~~ 283 (494)
..+...+- ..++.+.|... ....+.+.. +.+..+.+.+....+.+..+|.. .++..+.-.+...+
T Consensus 586 V~q~v~V~~~e~eK----f~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGg-v~q~dR~sti~dfK 660 (997)
T KOG0334|consen 586 VTQVVRVCAIENEK----FLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGG-VDQHDRSSTIEDFK 660 (997)
T ss_pred ceEEEEEecCchHH----HHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCC-CchHHHHhHHHHHh
Confidence 11111111 11111111110 111111111 11222222222222222222222 34433333455677
Q ss_pred CCceEEEEecCCccccCccchhHHHHHhhhhcCcCccc----cccEEEeecCCcceeEEec-CHHHHHHHHhhc
Q 011052 284 QGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDL-PEEIAKELLNKQ 352 (494)
Q Consensus 284 ~~~~t~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~~d~-~~~~~~~~~~~~ 352 (494)
.+.+.|++.++. +++++++.++.=+|++..+.--+| +|+++++...+.+-+|++- ....+.++.+.+
T Consensus 661 ~~~~~LLvaTsv--varGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al 732 (997)
T KOG0334|consen 661 NGVVNLLVATSV--VARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKAL 732 (997)
T ss_pred ccCceEEEehhh--hhcccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHH
Confidence 888899998887 688888888876666666554443 5666666555423344444 233445555544
No 167
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=97.72 E-value=0.00013 Score=80.01 Aligned_cols=91 Identities=25% Similarity=0.387 Sum_probs=75.7
Q ss_pred CcEEEEcCChhhHHHHHHHHhccC------ceeeecCCCCHHHHHHHHccccC--CCeeEEEechhhhccCCCCcccEEE
Q 011052 89 GKTIVFTQTKRDADEVSLALTSII------ASEALHGDISQHQRERTLNGFRQ--GKFTVLVATDVAARGLDIPNVDLII 160 (494)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~~~------~~~~lhg~~~~~~R~~~l~~Fr~--g~~~iLVaT~~~~~GiDip~v~~VI 160 (494)
+|+||||.+..+|+.+.+.|.+.+ .+..+.++..+.++ .++.|.. .-.+|.|+.+++..|||+|.|..+|
T Consensus 427 ~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~~q~--~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlV 504 (875)
T COG4096 427 GKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQAQA--LIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLV 504 (875)
T ss_pred CceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccchhhHH--HHHHHHhcCCCCceEEehhhhhcCCCchheeeee
Confidence 699999999999999999998532 37788888665544 3555543 3456889999999999999999999
Q ss_pred ecCCCCChhhHHHHhcccCCC
Q 011052 161 HYELPNDPETFVHRSGRTGRA 181 (494)
Q Consensus 161 ~~~~P~~~~~y~qr~GR~gR~ 181 (494)
.+-.-.|...|.||+||.-|.
T Consensus 505 F~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 505 FDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred ehhhhhhHHHHHHHhcCcccc
Confidence 999999999999999998884
No 168
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.68 E-value=0.00013 Score=81.06 Aligned_cols=119 Identities=24% Similarity=0.289 Sum_probs=87.5
Q ss_pred HHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCC
Q 011052 75 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDI 153 (494)
Q Consensus 75 ~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDi 153 (494)
..++.++...+..+.|+||-+.+.+..+.+...|.+ +++..+|...-. +|+.-+-.+.-..--|-|||++|.||.||
T Consensus 416 ~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h--~~EA~Iia~AG~~gaVTiATNMAGRGTDI 493 (822)
T COG0653 416 KAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNH--AREAEIIAQAGQPGAVTIATNMAGRGTDI 493 (822)
T ss_pred HHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccH--HHHHHHHhhcCCCCccccccccccCCccc
Confidence 456677777788899999999999999999999985 788888877644 44433333333233588999999999999
Q ss_pred C---ccc--------EEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhh
Q 011052 154 P---NVD--------LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 195 (494)
Q Consensus 154 p---~v~--------~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e 195 (494)
. +.. +||-..--.+..---|-.||+||.|.+|.+..|++-.+
T Consensus 494 kLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lSleD 546 (822)
T COG0653 494 KLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 546 (822)
T ss_pred ccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhhhhHH
Confidence 3 321 45554444454445699999999999999888776554
No 169
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.68 E-value=9.6e-05 Score=67.90 Aligned_cols=105 Identities=24% Similarity=0.396 Sum_probs=70.8
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhccC---ceeeecCCCCHHHHHHHHccccCCCeeEEEech--hhhccCCCCc--ccEE
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTSII---ASEALHGDISQHQRERTLNGFRQGKFTVLVATD--VAARGLDIPN--VDLI 159 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~~~---~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~--~~~~GiDip~--v~~V 159 (494)
.++.+|||+++.+..+.+++.+.... ...++.- .......+++.|+++.-.||+|+. .+..|||+|+ ++.|
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~v 85 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAV 85 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhhee
Confidence 35899999999999999999988532 1222222 355788899999999999999998 9999999985 7788
Q ss_pred EecCCCC----Ch--------------------------hhHHHHhcccCCCCCCceEEEecCh
Q 011052 160 IHYELPN----DP--------------------------ETFVHRSGRTGRAGKEGTAILMFTS 193 (494)
Q Consensus 160 I~~~~P~----~~--------------------------~~y~qr~GR~gR~G~~g~~i~l~~~ 193 (494)
|...+|. ++ ....|.+||+=|....--++++++.
T Consensus 86 ii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 86 IIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDS 149 (167)
T ss_dssp EEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESG
T ss_pred eecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcC
Confidence 8888773 21 1116889999998755444445544
No 170
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.59 E-value=0.0008 Score=67.29 Aligned_cols=53 Identities=19% Similarity=0.155 Sum_probs=46.8
Q ss_pred CcEEEEcCChhhHHHHHHHHh-----ccCceeeecCCCCHHHHHHHHccccCCCeeEEEech
Q 011052 89 GKTIVFTQTKRDADEVSLALT-----SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (494)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~-----~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~ 145 (494)
.-++||+||++.|-++++.+. ..+++.++.|+++.-.+...|.+ +-+++|||+
T Consensus 76 iFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~----rPHvVvatP 133 (442)
T KOG0340|consen 76 IFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSD----RPHVVVATP 133 (442)
T ss_pred ceEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhccc----CCCeEecCc
Confidence 468999999999999999986 25789999999999888888877 788999998
No 171
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.53 E-value=0.00029 Score=72.64 Aligned_cols=243 Identities=18% Similarity=0.224 Sum_probs=135.6
Q ss_pred cEEEEcCChhhHHHHHHHHhc------cCceeeecCCCCHHHHHHHHccccCCCeeEEEech-----hhhc---cCCCCc
Q 011052 90 KTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAAR---GLDIPN 155 (494)
Q Consensus 90 ~~IVF~~t~~~~~~l~~~L~~------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~-----~~~~---GiDip~ 155 (494)
-+||.+||++.|.+|.+-+.. .+.+..+-|+.+..+ -++.|++...+|||+|| ++.+ .+|+-.
T Consensus 81 galIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~---Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rs 157 (567)
T KOG0345|consen 81 GALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEE---DIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRS 157 (567)
T ss_pred eEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHH---HHHHHHHhCCcEEEeCchhHHHHHhchhhhccccc
Confidence 579999999999999887763 356888889976654 45667777889999998 3333 455557
Q ss_pred ccEEE--------ecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceecC--------CCCHH
Q 011052 156 VDLII--------HYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS--------PPVVE 219 (494)
Q Consensus 156 v~~VI--------~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~--------~p~~~ 219 (494)
+.++| ++++-.+..+.+-+.-+--|.| +++.+....+..|.+.---+...+. .|+.-
T Consensus 158 Le~LVLDEADrLldmgFe~~~n~ILs~LPKQRRTG-------LFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L 230 (567)
T KOG0345|consen 158 LEILVLDEADRLLDMGFEASVNTILSFLPKQRRTG-------LFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSL 230 (567)
T ss_pred cceEEecchHhHhcccHHHHHHHHHHhcccccccc-------cccchhhHHHHHHHHhhccCceeeeecccccccCchhh
Confidence 77666 3455556666666666555554 3444444445555443211111111 11100
Q ss_pred HH----H--HHHHHHHHHHHccCC----------ccchhhhhHHHHHHHhhcCHHHHHHHHHHHcC-CCCCCCCcccccC
Q 011052 220 DV----L--ESSAEQVVATLNGVH----------PESVEFFTPTAQRLIEEKGTDALAAALAQLSG-FSRPPSSRSLINH 282 (494)
Q Consensus 220 ~i----~--~~~~~~~~~~l~~~~----------~~~~~~f~~~a~~l~~~~~~~~l~aal~~~~g-~~~~~~~rsl~~~ 282 (494)
.. + ......+++-|.... +..+++|......++.... +..+-| +.++.+.+.+...
T Consensus 231 ~~~Y~v~~a~eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~-------i~~iHGK~~q~~R~k~~~~F 303 (567)
T KOG0345|consen 231 ALEYLVCEADEKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKRE-------IFSIHGKMSQKARAKVLEAF 303 (567)
T ss_pred cceeeEecHHHHHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCc-------EEEecchhcchhHHHHHHHH
Confidence 00 0 012223333333322 2233333333333311100 000000 1122222223222
Q ss_pred CCCceEEEEecCCccccCccchhHHHHHhhhhcCcCccc----cccEEEeecCCcceeEEecCHHHHHHHHhh
Q 011052 283 EQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDLPEEIAKELLNK 351 (494)
Q Consensus 283 ~~~~~t~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~~d~~~~~~~~~~~~ 351 (494)
....-.+++.+|. +++++|.++|+-+|..+.|...+- .|++.++++.+.+-+|..-.++...+++..
T Consensus 304 ~~~~~~vl~~TDV--aARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i 374 (567)
T KOG0345|consen 304 RKLSNGVLFCTDV--AARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFLRI 374 (567)
T ss_pred HhccCceEEeehh--hhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHHHHHh
Confidence 2233456778887 788999999999998888876654 788888888776666666666666677654
No 172
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=97.50 E-value=0.00022 Score=74.75 Aligned_cols=238 Identities=13% Similarity=0.203 Sum_probs=126.5
Q ss_pred cEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEech-----hhhcc-C---CCCc
Q 011052 90 KTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARG-L---DIPN 155 (494)
Q Consensus 90 ~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~-----~~~~G-i---Dip~ 155 (494)
-.|||+||++.|.+|...|.. .+.++.+.|||+...+++++++ .-+|+|||+ +...+ . ++.+
T Consensus 265 ~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~----~p~IVVATPGRlweli~e~n~~l~~~k~ 340 (731)
T KOG0347|consen 265 IALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ----RPDIVVATPGRLWELIEEDNTHLGNFKK 340 (731)
T ss_pred eeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc----CCCEEEecchHHHHHHHhhhhhhhhhhh
Confidence 389999999999999999872 5889999999999999999998 678999999 22222 1 3456
Q ss_pred ccEEEecCCC--------CChhhHHHHhcccCCCCCCceEEEecC------hh-----------hH---HHHHHHHHHhC
Q 011052 156 VDLIIHYELP--------NDPETFVHRSGRTGRAGKEGTAILMFT------SS-----------QR---RTVRSLERDVG 207 (494)
Q Consensus 156 v~~VI~~~~P--------~~~~~y~qr~GR~gR~G~~g~~i~l~~------~~-----------e~---~~l~~le~~~~ 207 (494)
|.++|.-... .....++-.++ --+....-..++|-. .. +. ..++.|.+.++
T Consensus 341 vkcLVlDEaDRmvekghF~Els~lL~~L~-e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig 419 (731)
T KOG0347|consen 341 VKCLVLDEADRMVEKGHFEELSKLLKHLN-EEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIG 419 (731)
T ss_pred ceEEEEccHHHHhhhccHHHHHHHHHHhh-hhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhC
Confidence 6765532211 12223333333 111111222222211 00 00 12222323332
Q ss_pred C--CceecCCCCHHHHHHHHHHHHHHHHccCCccchh------------hhhHH---HHH---HHhhcCH--HHHHHHHH
Q 011052 208 C--KFEFVSPPVVEDVLESSAEQVVATLNGVHPESVE------------FFTPT---AQR---LIEEKGT--DALAAALA 265 (494)
Q Consensus 208 ~--~~~~~~~p~~~~i~~~~~~~~~~~l~~~~~~~~~------------~f~~~---a~~---l~~~~~~--~~l~aal~ 265 (494)
. +...+.+...........+..+.. ...+.+..- .|-.. +.+ ++..++. -.|-|.+
T Consensus 420 ~~~kpkiiD~t~q~~ta~~l~Es~I~C-~~~eKD~ylyYfl~ryPGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M- 497 (731)
T KOG0347|consen 420 FRGKPKIIDLTPQSATASTLTESLIEC-PPLEKDLYLYYFLTRYPGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASM- 497 (731)
T ss_pred ccCCCeeEecCcchhHHHHHHHHhhcC-CccccceeEEEEEeecCCceEEEechHHHHHHHHHHHhhcCCCCchhhHHH-
Confidence 2 123333333333333333322221 001111100 11100 111 1111110 0011111
Q ss_pred HHcCCCCCCCCcccccCCCCceEEEEecCCccccCccchhHHHHHhhhhcCcCccc----cccEEEeecCCcceeEEecC
Q 011052 266 QLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDLP 341 (494)
Q Consensus 266 ~~~g~~~~~~~rsl~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~~d~~ 341 (494)
.|..+.++|...++.-.++++++|. |+++++...|.|+||+..|...+- -|++.++...++.-.+++-+
T Consensus 498 -----~QKqRLknLEkF~~~~~~VLiaTDV--AARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~ 570 (731)
T KOG0347|consen 498 -----IQKQRLKNLEKFKQSPSGVLIATDV--AARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQ 570 (731)
T ss_pred -----HHHHHHHhHHHHhcCCCeEEEeehh--hhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChH
Confidence 1112234566666777899999999 899999999999999998866543 58888888877544445443
No 173
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=97.46 E-value=0.00036 Score=75.00 Aligned_cols=118 Identities=19% Similarity=0.326 Sum_probs=102.1
Q ss_pred ccHHHHHHHHHHHh-ccCCcEEEEcCChhhHHHHHHHHh-ccCceeeecCCCCHHHHHHHHccccCC-CeeEEEechhhh
Q 011052 72 TSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQG-KFTVLVATDVAA 148 (494)
Q Consensus 72 ~~k~~~L~~ll~~~-~~~~~~IVF~~t~~~~~~l~~~L~-~~~~~~~lhg~~~~~~R~~~l~~Fr~g-~~~iLVaT~~~~ 148 (494)
..|+..|..+|..+ ..+.++|+|+...+..+.+.++|. +++...-|.|.....+|..++..|... .+-.|++|-+..
T Consensus 1027 SgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGG 1106 (1185)
T KOG0388|consen 1027 SGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGG 1106 (1185)
T ss_pred ccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCc
Confidence 35677777777666 346799999999999999999997 488899999999999999999999864 455789999999
Q ss_pred ccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEE
Q 011052 149 RGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAIL 189 (494)
Q Consensus 149 ~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~ 189 (494)
.||++...+.||.||-.|++..-.|...|+.|-|++-.+.+
T Consensus 1107 LGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtv 1147 (1185)
T KOG0388|consen 1107 LGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTV 1147 (1185)
T ss_pred ccccccccceEEEecCCCCcchhhHHHHHHHhccCccceee
Confidence 99999999999999999999999999999999997655433
No 174
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.33 E-value=0.0014 Score=62.83 Aligned_cols=68 Identities=21% Similarity=0.281 Sum_probs=56.0
Q ss_pred cEEEEcCChhhHHHHHHHHhc------cCceeeecCCCCHHHHHHHHccccCCCeeEEEech------hhhccCCCCccc
Q 011052 90 KTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD------VAARGLDIPNVD 157 (494)
Q Consensus 90 ~~IVF~~t~~~~~~l~~~L~~------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~------~~~~GiDip~v~ 157 (494)
.++|.|.|++.|-+|.....+ .+++.+++|+++.+.-+++++. -..|+|+|+ +-.+-+++.+|.
T Consensus 112 svlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~----~PhivVgTPGrilALvr~k~l~lk~vk 187 (387)
T KOG0329|consen 112 SVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKN----CPHIVVGTPGRILALVRNRSLNLKNVK 187 (387)
T ss_pred EEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhC----CCeEEEcCcHHHHHHHHhccCchhhcc
Confidence 679999999999999877653 3678999999999988888877 667999998 445678888888
Q ss_pred EEEe
Q 011052 158 LIIH 161 (494)
Q Consensus 158 ~VI~ 161 (494)
+-|.
T Consensus 188 hFvl 191 (387)
T KOG0329|consen 188 HFVL 191 (387)
T ss_pred eeeh
Confidence 7663
No 175
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=97.31 E-value=0.00091 Score=66.08 Aligned_cols=11 Identities=18% Similarity=0.407 Sum_probs=7.0
Q ss_pred eeccCCCcCCC
Q 011052 361 KITKLPALQDD 371 (494)
Q Consensus 361 v~~~LP~~~~~ 371 (494)
.+.++|+++..
T Consensus 315 pppempswqqq 325 (465)
T KOG3973|consen 315 PPPEMPSWQQQ 325 (465)
T ss_pred CCCCCCcHHHh
Confidence 34577777764
No 176
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.26 E-value=0.0069 Score=68.28 Aligned_cols=78 Identities=15% Similarity=0.258 Sum_probs=57.3
Q ss_pred CCcEEEEcCChhhHHHHHHHHhcc-C-------ceeeecCCCCHHHHHHHHccccC----CCeeEEEec--hhhhccCCC
Q 011052 88 GGKTIVFTQTKRDADEVSLALTSI-I-------ASEALHGDISQHQRERTLNGFRQ----GKFTVLVAT--DVAARGLDI 153 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~~-~-------~~~~lhg~~~~~~R~~~l~~Fr~----g~~~iLVaT--~~~~~GiDi 153 (494)
++.+|||+++....+.+++.+... + +...+-+ -...++..++++|+. +.-.||+|+ ..+++|||+
T Consensus 522 pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~-~~~~~~~~~l~~f~~~~~~~~gavL~av~gGk~sEGIDf 600 (705)
T TIGR00604 522 PDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVET-KDAQETSDALERYKQAVSEGRGAVLLSVAGGKVSEGIDF 600 (705)
T ss_pred CCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeC-CCcchHHHHHHHHHHHHhcCCceEEEEecCCcccCcccc
Confidence 588999999999999998887631 1 1122211 112577889999964 345699998 889999999
Q ss_pred Cc--ccEEEecCCCC
Q 011052 154 PN--VDLIIHYELPN 166 (494)
Q Consensus 154 p~--v~~VI~~~~P~ 166 (494)
++ ++.||..++|.
T Consensus 601 ~~~~~r~ViivGlPf 615 (705)
T TIGR00604 601 CDDLGRAVIMVGIPY 615 (705)
T ss_pred CCCCCcEEEEEccCC
Confidence 86 67888888875
No 177
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=97.26 E-value=0.0019 Score=71.05 Aligned_cols=78 Identities=18% Similarity=0.143 Sum_probs=61.2
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhccCc-eeeecCCCCHHHHHHHHccccCC----CeeEEEechhhhccCCC--------
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTSIIA-SEALHGDISQHQRERTLNGFRQG----KFTVLVATDVAARGLDI-------- 153 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~~~~-~~~lhg~~~~~~R~~~l~~Fr~g----~~~iLVaT~~~~~GiDi-------- 153 (494)
..+.++|.+.+....+.+++.|...+. ...+.|+.+ .+...+++|+.. .-.||++|+.+..|||+
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~ 546 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPD 546 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCC
Confidence 467999999999999999999986543 344556543 345678888863 67899999999999999
Q ss_pred --CcccEEEecCCCC
Q 011052 154 --PNVDLIIHYELPN 166 (494)
Q Consensus 154 --p~v~~VI~~~~P~ 166 (494)
..+++||...+|.
T Consensus 547 ~G~~Ls~ViI~kLPF 561 (636)
T TIGR03117 547 KDNLLTDLIITCAPF 561 (636)
T ss_pred CCCcccEEEEEeCCC
Confidence 3478888877774
No 178
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=97.18 E-value=0.0058 Score=66.36 Aligned_cols=70 Identities=14% Similarity=0.187 Sum_probs=49.5
Q ss_pred CCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEech-----hh-hccCCCCcc
Q 011052 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VA-ARGLDIPNV 156 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~-----~~-~~GiDip~v 156 (494)
+.++||.+||++.|.++++.++. .+.+..+.|+.+..++...+.. ..+|+|+|+ .+ ...+++.++
T Consensus 196 ~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~----~~~IiV~TPgrL~~~l~~~~~~l~~v 271 (518)
T PLN00206 196 NPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQ----GVELIVGTPGRLIDLLSKHDIELDNV 271 (518)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcC----CCCEEEECHHHHHHHHHcCCccchhe
Confidence 45799999999999998877653 2456677777666555444433 578999996 33 335778888
Q ss_pred cEEEe
Q 011052 157 DLIIH 161 (494)
Q Consensus 157 ~~VI~ 161 (494)
.+||.
T Consensus 272 ~~lVi 276 (518)
T PLN00206 272 SVLVL 276 (518)
T ss_pred eEEEe
Confidence 87773
No 179
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=97.17 E-value=0.0014 Score=74.02 Aligned_cols=59 Identities=19% Similarity=0.214 Sum_probs=42.5
Q ss_pred EechhhhccCCCCc----------------------c----------cEEEecCCCCChhhHHH--HhcccCCCCCCceE
Q 011052 142 VATDVAARGLDIPN----------------------V----------DLIIHYELPNDPETFVH--RSGRTGRAGKEGTA 187 (494)
Q Consensus 142 VaT~~~~~GiDip~----------------------v----------~~VI~~~~P~~~~~y~q--r~GR~gR~G~~g~~ 187 (494)
|+|.+...|+|+|. + ++||.|++-.+.-.-+| |++|++|. +.+
T Consensus 431 ~~~~~~~e~~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~L~e~~P~~VImYEP~~sfIR~IEvyra~r~~r~---~rV 507 (814)
T TIGR00596 431 FEIIDEENDIDIYSGAEFDNLPQHITHFLWGERDEYVLRCSLEELMPRYVIMYEPDISFIRQLEVYKASRPLRP---LRV 507 (814)
T ss_pred ccccccccccccchhhccccccceeeeecccccchhhHHHHHhhhCCCEEEEECCChHHHHHHHHHHccCCCCC---cEE
Confidence 77888899999997 5 89999997777666677 88887775 566
Q ss_pred EEecCh---hhHHHHHHHH
Q 011052 188 ILMFTS---SQRRTVRSLE 203 (494)
Q Consensus 188 i~l~~~---~e~~~l~~le 203 (494)
|+++.. .|.+++..+.
T Consensus 508 yfL~y~~S~EEq~yl~sir 526 (814)
T TIGR00596 508 YFLYYGGSIEEQRYLTSLR 526 (814)
T ss_pred EEEEECCcHHHHHHHHHHH
Confidence 666543 3444555543
No 180
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=97.10 E-value=0.0026 Score=66.22 Aligned_cols=107 Identities=18% Similarity=0.264 Sum_probs=63.5
Q ss_pred CCcEEEEcCChhhHHHHHHHHhc------cCceeeecCCCCHHHHHHHHccccCCCeeEEEech------------hhhc
Q 011052 88 GGKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD------------VAAR 149 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~------------~~~~ 149 (494)
+-.+||.|||++.|-+++..++. .+.+..+-|+-.-..-+. +..+ .++|||||+ .+.+
T Consensus 154 ~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~---kl~k-~~niliATPGRLlDHlqNt~~f~~r 229 (543)
T KOG0342|consen 154 GTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEAD---KLVK-GCNILIATPGRLLDHLQNTSGFLFR 229 (543)
T ss_pred CeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHH---Hhhc-cccEEEeCCchHHhHhhcCCcchhh
Confidence 34789999999999999888763 344556666644333233 3333 899999998 1111
Q ss_pred cC---CCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHH
Q 011052 150 GL---DIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERD 205 (494)
Q Consensus 150 Gi---Dip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~ 205 (494)
-+ =+...+++...+++.+++..+--..+ . ...++++......++.+.+.
T Consensus 230 ~~k~lvlDEADrlLd~GF~~di~~Ii~~lpk------~-rqt~LFSAT~~~kV~~l~~~ 281 (543)
T KOG0342|consen 230 NLKCLVLDEADRLLDIGFEEDVEQIIKILPK------Q-RQTLLFSATQPSKVKDLARG 281 (543)
T ss_pred ccceeEeecchhhhhcccHHHHHHHHHhccc------c-ceeeEeeCCCcHHHHHHHHH
Confidence 11 12334445567778888877777653 1 22334444444445555443
No 181
>PRK14873 primosome assembly protein PriA; Provisional
Probab=97.03 E-value=0.012 Score=65.42 Aligned_cols=73 Identities=14% Similarity=0.180 Sum_probs=47.4
Q ss_pred HHHHccccCCCeeEEEechhhhccCCCCcccEEEecCC------CC------ChhhHHHHhcccCCCCCCceEEEecChh
Q 011052 127 ERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYEL------PN------DPETFVHRSGRTGRAGKEGTAILMFTSS 194 (494)
Q Consensus 127 ~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~~~~------P~------~~~~y~qr~GR~gR~G~~g~~i~l~~~~ 194 (494)
+.+++.|.. +.+|||+|..++-.+. +++++|+..|. |. ....+.|-+||+||..+.|.+++...+.
T Consensus 462 d~~l~~~~~-~~~IlVGTqgaepm~~-g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~iq~~p~ 539 (665)
T PRK14873 462 DQVVDTVDA-GPALVVATPGAEPRVE-GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVVVAESS 539 (665)
T ss_pred HHHHHhhcc-CCCEEEECCCCccccc-CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEEEeCCC
Confidence 347788864 8999999993322222 46676664442 21 2344588999999999999999875443
Q ss_pred hHHHHHHH
Q 011052 195 QRRTVRSL 202 (494)
Q Consensus 195 e~~~l~~l 202 (494)
...++.+
T Consensus 540 -~~~~~~l 546 (665)
T PRK14873 540 -LPTVQAL 546 (665)
T ss_pred -CHHHHHH
Confidence 3344443
No 182
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=96.99 E-value=0.0094 Score=68.86 Aligned_cols=60 Identities=17% Similarity=0.197 Sum_probs=51.0
Q ss_pred cCCcEEEEcCChhhHH-HHHHHHhccCceeeecCCCCHHHHHHHHccccC--CCeeEEEechh
Q 011052 87 KGGKTIVFTQTKRDAD-EVSLALTSIIASEALHGDISQHQRERTLNGFRQ--GKFTVLVATDV 146 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~-~l~~~L~~~~~~~~lhg~~~~~~R~~~l~~Fr~--g~~~iLVaT~~ 146 (494)
..+.+||.+|+++.+. ++......++.+..+.++++..++..++..+.. +.++||++|+.
T Consensus 499 ~~GiTLVISPLiSLmqDQV~~L~~~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPE 561 (1195)
T PLN03137 499 CPGITLVISPLVSLIQDQIMNLLQANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPE 561 (1195)
T ss_pred cCCcEEEEeCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChH
Confidence 3578999999999997 555555568999999999999999999998876 88999999984
No 183
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.95 E-value=0.002 Score=69.06 Aligned_cols=60 Identities=23% Similarity=0.321 Sum_probs=53.7
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechh
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~ 146 (494)
..+.+||.+|+++.+++....|.. ++.+..++++.+..++..++...+.+..+||++|+.
T Consensus 50 ~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe 110 (470)
T TIGR00614 50 SDGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPE 110 (470)
T ss_pred cCCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHH
Confidence 457899999999999988888875 788999999999999999999999999999999984
No 184
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=96.82 E-value=0.0034 Score=69.71 Aligned_cols=118 Identities=18% Similarity=0.239 Sum_probs=98.1
Q ss_pred cHHHHHHHHHHHh-ccCCcEEEEcCChhhHHHHHHHHhc----c-------------------CceeeecCCCCHHHHHH
Q 011052 73 SKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTS----I-------------------IASEALHGDISQHQRER 128 (494)
Q Consensus 73 ~k~~~L~~ll~~~-~~~~~~IVF~~t~~~~~~l~~~L~~----~-------------------~~~~~lhg~~~~~~R~~ 128 (494)
.|+-+|.+||... .-+.++|||..+....+.|..+|.. + .....|.|..+..+|++
T Consensus 1126 gKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k 1205 (1567)
T KOG1015|consen 1126 GKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKK 1205 (1567)
T ss_pred cceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHH
Confidence 4566677777654 3468999999999999988888861 0 13456888999999999
Q ss_pred HHccccCC----CeeEEEechhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEe
Q 011052 129 TLNGFRQG----KFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILM 190 (494)
Q Consensus 129 ~l~~Fr~g----~~~iLVaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l 190 (494)
+.+.|.+- ..-.||+|-+.+.|||+-..+.||.||..|++..-+|-+=|+-|.|++--||++
T Consensus 1206 ~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiY 1271 (1567)
T KOG1015|consen 1206 WAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIY 1271 (1567)
T ss_pred HHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeeh
Confidence 99999863 234799999999999999999999999999999999999999999988777764
No 185
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=96.80 E-value=0.0071 Score=67.03 Aligned_cols=9 Identities=33% Similarity=0.423 Sum_probs=4.4
Q ss_pred ccc-EEEeec
Q 011052 322 IGK-IHIIAD 330 (494)
Q Consensus 322 ig~-i~~~~~ 330 (494)
.|. |-+.|+
T Consensus 1075 dgq~IV~VDd 1084 (1282)
T KOG0921|consen 1075 DGQGIVRVDD 1084 (1282)
T ss_pred cCcceEEeec
Confidence 444 555444
No 186
>PRK10689 transcription-repair coupling factor; Provisional
Probab=96.74 E-value=0.0011 Score=77.91 Aligned_cols=75 Identities=17% Similarity=0.184 Sum_probs=62.9
Q ss_pred ccCCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechh-hhccCCCCcccEE
Q 011052 86 AKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-AARGLDIPNVDLI 159 (494)
Q Consensus 86 ~~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~-~~~GiDip~v~~V 159 (494)
..+.+++|.|||++.|.++++.+.+ .+.+..+++..+..++..+++..+++.++|||+|+- +...+++.++.+|
T Consensus 647 ~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lL 726 (1147)
T PRK10689 647 ENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLL 726 (1147)
T ss_pred HcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEE
Confidence 4568999999999999999998874 246778999999999999999999999999999974 4444667788877
Q ss_pred E
Q 011052 160 I 160 (494)
Q Consensus 160 I 160 (494)
|
T Consensus 727 V 727 (1147)
T PRK10689 727 I 727 (1147)
T ss_pred E
Confidence 6
No 187
>COG4889 Predicted helicase [General function prediction only]
Probab=96.70 E-value=0.0011 Score=73.09 Aligned_cols=101 Identities=21% Similarity=0.426 Sum_probs=80.9
Q ss_pred CcEEEEcCChhhHHHHHHHHhc--------------cC--ceeeecCCCCHHHHHHHHc---cccCCCeeEEEechhhhc
Q 011052 89 GKTIVFTQTKRDADEVSLALTS--------------II--ASEALHGDISQHQRERTLN---GFRQGKFTVLVATDVAAR 149 (494)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~--------------~~--~~~~lhg~~~~~~R~~~l~---~Fr~g~~~iLVaT~~~~~ 149 (494)
.++|-||.+.++..++++.+.. .+ .+..+.|.|.-.+|...+. .|...+|+||--.-.+++
T Consensus 461 ~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSE 540 (1518)
T COG4889 461 QRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSE 540 (1518)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhc
Confidence 3789999999988888877641 12 3445668899888865553 466788999999999999
Q ss_pred cCCCCcccEEEecCCCCChhhHHHHhcccCCC--C-CCceEEE
Q 011052 150 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRA--G-KEGTAIL 189 (494)
Q Consensus 150 GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~--G-~~g~~i~ 189 (494)
|+|+|.++.||.+++-.+.-+.+|.+||+-|- | +-|..|+
T Consensus 541 GVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIIL 583 (1518)
T COG4889 541 GVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIIL 583 (1518)
T ss_pred CCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEE
Confidence 99999999999999999999999999999994 3 2355555
No 188
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=96.66 E-value=0.0041 Score=66.75 Aligned_cols=70 Identities=11% Similarity=0.190 Sum_probs=51.2
Q ss_pred CcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechh------hhccCCCCccc
Q 011052 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV------AARGLDIPNVD 157 (494)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~------~~~GiDip~v~ 157 (494)
.++||.+||++.|.++++.++. ++.+..+||+.+...+.+.+ ..+..+|||+|+- ....+.+.+++
T Consensus 163 ~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~---~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~ 239 (475)
T PRK01297 163 PRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQL---EARFCDILVATPGRLLDFNQRGEVHLDMVE 239 (475)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHH---hCCCCCEEEECHHHHHHHHHcCCcccccCc
Confidence 5799999999999999887763 36788899998766554433 3456789999982 22345667777
Q ss_pred EEEe
Q 011052 158 LIIH 161 (494)
Q Consensus 158 ~VI~ 161 (494)
+||.
T Consensus 240 ~lVi 243 (475)
T PRK01297 240 VMVL 243 (475)
T ss_pred eEEe
Confidence 7763
No 189
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=96.59 E-value=0.0069 Score=67.95 Aligned_cols=82 Identities=17% Similarity=0.275 Sum_probs=68.5
Q ss_pred HHHHHhccCCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechh-hhccCCC
Q 011052 80 DLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-AARGLDI 153 (494)
Q Consensus 80 ~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~-~~~GiDi 153 (494)
.++.....+.+++|.+||++.|.++++.+++ ++.+..+||+++..+|.++++...+|.++|+|+|+. +...+.+
T Consensus 302 ~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~ 381 (681)
T PRK10917 302 AALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEF 381 (681)
T ss_pred HHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchh
Confidence 3444445667999999999999999998874 378899999999999999999999999999999984 4445678
Q ss_pred CcccEEEe
Q 011052 154 PNVDLIIH 161 (494)
Q Consensus 154 p~v~~VI~ 161 (494)
.++.+||.
T Consensus 382 ~~l~lvVI 389 (681)
T PRK10917 382 HNLGLVII 389 (681)
T ss_pred cccceEEE
Confidence 88888773
No 190
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=96.54 E-value=0.06 Score=62.02 Aligned_cols=185 Identities=14% Similarity=0.218 Sum_probs=114.1
Q ss_pred HHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcC-cccH-HH----HHHHHHH
Q 011052 10 VELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTT-ATSK-RT----ILSDLIT 83 (494)
Q Consensus 10 i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~-~~~k-~~----~L~~ll~ 83 (494)
+..|-+++-++.+++.+|..+.+. +.+ .++...-.+++..... ..+..++...+... ..+. .. .+..+..
T Consensus 1279 ~r~ia~q~~k~ir~v~ls~~lana-~d~--ig~s~~~v~Nf~p~~R-~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~ 1354 (1674)
T KOG0951|consen 1279 MRYIASQLEKKIRVVALSSSLANA-RDL--IGASSSGVFNFSPSVR-PVPLEIHIQSVDISHFESRMLAMTKPTYTAIVR 1354 (1674)
T ss_pred HHHHHHHHHhheeEEEeehhhccc-hhh--ccccccceeecCcccC-CCceeEEEEEeccchhHHHHHHhhhhHHHHHHH
Confidence 455666666777888887776442 333 2333333444432211 11222222222111 1111 11 1223333
Q ss_pred HhccCCcEEEEcCChhhHHHHHHHHhc-----------------------cCceeeecCCCCHHHHHHHHccccCCCeeE
Q 011052 84 VYAKGGKTIVFTQTKRDADEVSLALTS-----------------------IIASEALHGDISQHQRERTLNGFRQGKFTV 140 (494)
Q Consensus 84 ~~~~~~~~IVF~~t~~~~~~l~~~L~~-----------------------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~i 140 (494)
......+++||+++++.|..++..|-. .+++.+=|-+|+..++..+-.-|..|.++|
T Consensus 1355 ~a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v 1434 (1674)
T KOG0951|consen 1355 HAGNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQV 1434 (1674)
T ss_pred HhcCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEE
Confidence 334568999999999999888765421 123333488999999999999999999999
Q ss_pred EEechhhhccCCCCcccEEE----ecC------CCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHH
Q 011052 141 LVATDVAARGLDIPNVDLII----HYE------LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 202 (494)
Q Consensus 141 LVaT~~~~~GiDip~v~~VI----~~~------~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~l 202 (494)
+|...- ..|+-...--+|| -|| .+.++....|+.|+|.| .|.|++++....+.+.++.
T Consensus 1435 ~v~s~~-~~~~~~~~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykkf 1502 (1674)
T KOG0951|consen 1435 CVMSRD-CYGTKLKAHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYKKF 1502 (1674)
T ss_pred EEEEcc-cccccccceEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCchHHHHHHh
Confidence 998765 6676664433333 133 46678889999999998 5789999988887766654
No 191
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=96.49 E-value=0.0093 Score=59.16 Aligned_cols=12 Identities=0% Similarity=0.249 Sum_probs=5.1
Q ss_pred HHHHHHHHHHhC
Q 011052 196 RRTVRSLERDVG 207 (494)
Q Consensus 196 ~~~l~~le~~~~ 207 (494)
...+..|+..+.
T Consensus 164 ~~lfe~i~~kl~ 175 (465)
T KOG3973|consen 164 WKLFETIRQKLD 175 (465)
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 192
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=96.45 E-value=0.0094 Score=67.46 Aligned_cols=70 Identities=14% Similarity=0.204 Sum_probs=51.4
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhc----cCceeeecCCCCHHHHHHHHccccCCCeeEEEech-hhhcc-C--------C
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-VAARG-L--------D 152 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~-~~~~G-i--------D 152 (494)
+..++||.+||++.+.++...++. .+.+..++|+.+..+|..+.+ ..+|+|+|+ .+..+ + .
T Consensus 80 ~~~~aL~l~PtraLa~q~~~~l~~l~~~~i~v~~~~Gdt~~~~r~~i~~-----~~~IivtTPd~L~~~~L~~~~~~~~~ 154 (742)
T TIGR03817 80 PRATALYLAPTKALAADQLRAVRELTLRGVRPATYDGDTPTEERRWARE-----HARYVLTNPDMLHRGILPSHARWARF 154 (742)
T ss_pred CCcEEEEEcChHHHHHHHHHHHHHhccCCeEEEEEeCCCCHHHHHHHhc-----CCCEEEEChHHHHHhhccchhHHHHH
Confidence 446899999999999999998874 367888999999887754433 368999996 22222 1 1
Q ss_pred CCcccEEEe
Q 011052 153 IPNVDLIIH 161 (494)
Q Consensus 153 ip~v~~VI~ 161 (494)
+.++++||.
T Consensus 155 l~~l~~vVi 163 (742)
T TIGR03817 155 LRRLRYVVI 163 (742)
T ss_pred HhcCCEEEE
Confidence 567787773
No 193
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=96.33 E-value=0.018 Score=62.40 Aligned_cols=117 Identities=16% Similarity=0.264 Sum_probs=91.3
Q ss_pred cHHHHHHHHHHHh--ccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccC--CCeeE-EEechh
Q 011052 73 SKRTILSDLITVY--AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQ--GKFTV-LVATDV 146 (494)
Q Consensus 73 ~k~~~L~~ll~~~--~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~--g~~~i-LVaT~~ 146 (494)
.|...+..++... ....+++|...-.....-+...|++ +.....+||.+...+|+.+++.|.. +..+| |++-.+
T Consensus 729 ~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtA 808 (901)
T KOG4439|consen 729 CKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTA 808 (901)
T ss_pred hHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEcc
Confidence 3444444444332 3456888877766666777777876 6778899999999999999999954 43444 556678
Q ss_pred hhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEE
Q 011052 147 AARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAIL 189 (494)
Q Consensus 147 ~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~ 189 (494)
.+.|||+-..+|+|..|+.|++.--.|.+-|.-|.|++-.+++
T Consensus 809 GGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~I 851 (901)
T KOG4439|consen 809 GGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFI 851 (901)
T ss_pred CcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEE
Confidence 8889999999999999999999999999999999997766655
No 194
>PRK05580 primosome assembly protein PriA; Validated
Probab=96.32 E-value=0.013 Score=65.70 Aligned_cols=90 Identities=20% Similarity=0.249 Sum_probs=70.6
Q ss_pred ccHHHHHHHHH-HHhccCCcEEEEcCChhhHHHHHHHHhc--cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhh
Q 011052 72 TSKRTILSDLI-TVYAKGGKTIVFTQTKRDADEVSLALTS--IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA 148 (494)
Q Consensus 72 ~~k~~~L~~ll-~~~~~~~~~IVF~~t~~~~~~l~~~L~~--~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~ 148 (494)
..|.++...++ .....+.++||.+||++.+.++++.|++ +..+..+||+++..+|.+.+.+..++..+|+|+|..+.
T Consensus 173 SGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal 252 (679)
T PRK05580 173 SGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL 252 (679)
T ss_pred ChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh
Confidence 34655544333 2334567999999999999999999986 45788999999999999999999999999999998543
Q ss_pred ccCCCCcccEEEec
Q 011052 149 RGLDIPNVDLIIHY 162 (494)
Q Consensus 149 ~GiDip~v~~VI~~ 162 (494)
-+.+.++.+||.-
T Consensus 253 -~~p~~~l~liVvD 265 (679)
T PRK05580 253 -FLPFKNLGLIIVD 265 (679)
T ss_pred -cccccCCCEEEEE
Confidence 2566788887743
No 195
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=96.26 E-value=0.014 Score=64.89 Aligned_cols=82 Identities=17% Similarity=0.281 Sum_probs=68.2
Q ss_pred HHHHHhccCCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhh-ccCCC
Q 011052 80 DLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA-RGLDI 153 (494)
Q Consensus 80 ~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~-~GiDi 153 (494)
.++.....+.+++|.+||+..|.++++.+++ ++.+..+||+++..+|..+++...+|+.+|+|+|+..- ..+++
T Consensus 276 ~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~ 355 (630)
T TIGR00643 276 AMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEF 355 (630)
T ss_pred HHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccc
Confidence 3444555677999999999999999988874 47899999999999999999999999999999998543 35677
Q ss_pred CcccEEEe
Q 011052 154 PNVDLIIH 161 (494)
Q Consensus 154 p~v~~VI~ 161 (494)
.++.+||.
T Consensus 356 ~~l~lvVI 363 (630)
T TIGR00643 356 KRLALVII 363 (630)
T ss_pred cccceEEE
Confidence 78888773
No 196
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.25 E-value=0.017 Score=62.40 Aligned_cols=89 Identities=20% Similarity=0.252 Sum_probs=70.1
Q ss_pred ccHHHHHHHHHH-HhccCCcEEEEcCChhhHHHHHHHHhc--cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhh
Q 011052 72 TSKRTILSDLIT-VYAKGGKTIVFTQTKRDADEVSLALTS--IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA 148 (494)
Q Consensus 72 ~~k~~~L~~ll~-~~~~~~~~IVF~~t~~~~~~l~~~L~~--~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~ 148 (494)
.-|.++...++. .+..+.++||.+|++..+.++++.|++ +..+..+|++++..+|.++..+.++|+.+|+|+|..+-
T Consensus 8 sGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsal 87 (505)
T TIGR00595 8 SGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSAL 87 (505)
T ss_pred CCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHH
Confidence 345555444443 334567999999999999999999986 35688999999999999999999999999999998654
Q ss_pred ccCCCCcccEEEe
Q 011052 149 RGLDIPNVDLIIH 161 (494)
Q Consensus 149 ~GiDip~v~~VI~ 161 (494)
-+.++++.+||.
T Consensus 88 -f~p~~~l~lIIV 99 (505)
T TIGR00595 88 -FLPFKNLGLIIV 99 (505)
T ss_pred -cCcccCCCEEEE
Confidence 356778887773
No 197
>PF13871 Helicase_C_4: Helicase_C-like
Probab=96.12 E-value=0.018 Score=57.01 Aligned_cols=79 Identities=22% Similarity=0.384 Sum_probs=59.7
Q ss_pred HHHccccCCCeeEEEechhhhccCCCCc--------ccEEEecCCCCChhhHHHHhcccCCCCCC-ceEEEec-C--hhh
Q 011052 128 RTLNGFRQGKFTVLVATDVAARGLDIPN--------VDLIIHYELPNDPETFVHRSGRTGRAGKE-GTAILMF-T--SSQ 195 (494)
Q Consensus 128 ~~l~~Fr~g~~~iLVaT~~~~~GiDip~--------v~~VI~~~~P~~~~~y~qr~GR~gR~G~~-g~~i~l~-~--~~e 195 (494)
...+.|.+|+..|+|.|+.++.||-+.. -++-|...+||+.+..+|..||+.|.++. .-.|.++ + +-|
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~gE 131 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPGE 131 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHHH
Confidence 4566899999999999999999998852 23567789999999999999999999853 3334433 2 346
Q ss_pred HHHHHHHHHHh
Q 011052 196 RRTVRSLERDV 206 (494)
Q Consensus 196 ~~~l~~le~~~ 206 (494)
++....+.+.+
T Consensus 132 ~Rfas~va~rL 142 (278)
T PF13871_consen 132 RRFASTVARRL 142 (278)
T ss_pred HHHHHHHHHHH
Confidence 66666665544
No 198
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=95.99 E-value=0.0083 Score=58.50 Aligned_cols=244 Identities=12% Similarity=0.127 Sum_probs=124.7
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEech-----hhh-ccCCCCc
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAA-RGLDIPN 155 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~-----~~~-~GiDip~ 155 (494)
..-++||..||++.|.++.+-+.. ++.|.+.-|+.+-.+-.+.++- ...++..|| +.. +.+...+
T Consensus 94 r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~----G~hvVsGtPGrv~dmikr~~L~tr~ 169 (400)
T KOG0328|consen 94 RETQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDY----GQHVVSGTPGRVLDMIKRRSLRTRA 169 (400)
T ss_pred ceeeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcc----cceEeeCCCchHHHHHHhccccccc
Confidence 346899999999999999887763 3566666777776666666663 567888887 333 3466677
Q ss_pred ccEEEecCCC--CChhhHHHHhcccCCCCCCceEEEecChh-hHHHHHHHHHHhCCCceecCCC---CHHHHHH------
Q 011052 156 VDLIIHYELP--NDPETFVHRSGRTGRAGKEGTAILMFTSS-QRRTVRSLERDVGCKFEFVSPP---VVEDVLE------ 223 (494)
Q Consensus 156 v~~VI~~~~P--~~~~~y~qr~GR~gR~G~~g~~i~l~~~~-e~~~l~~le~~~~~~~~~~~~p---~~~~i~~------ 223 (494)
|.++|.-... -+. -|-+.+=+.-|.=.++..+++++.. ....++..+++...++.....+ +.+-+.+
T Consensus 170 vkmlVLDEaDemL~k-gfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve 248 (400)
T KOG0328|consen 170 VKMLVLDEADEMLNK-GFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVE 248 (400)
T ss_pred eeEEEeccHHHHHHh-hHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeec
Confidence 7776642211 010 1222222233333456666665543 3345556666655444322111 1111111
Q ss_pred --HHHHHHHHHHc-cCCccchhhhhHH---HHHHHhhcCHHHHHHHHHHHcCCCCCCCCcc--cccCCCCceEEEEecCC
Q 011052 224 --SSAEQVVATLN-GVHPESVEFFTPT---AQRLIEEKGTDALAAALAQLSGFSRPPSSRS--LINHEQGWVTLQLTRDS 295 (494)
Q Consensus 224 --~~~~~~~~~l~-~~~~~~~~~f~~~---a~~l~~~~~~~~l~aal~~~~g~~~~~~~rs--l~~~~~~~~t~~~~~~~ 295 (494)
.|....+..|- .+...+...|-.+ ..-|-+......+...-.|. +-+.++|. ....+.+..++++.+|.
T Consensus 249 ~EewKfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~nftVssmHG---Dm~qkERd~im~dFRsg~SrvLitTDV 325 (400)
T KOG0328|consen 249 KEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHG---DMEQKERDKIMNDFRSGKSRVLITTDV 325 (400)
T ss_pred hhhhhHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhhCceeeeccC---CcchhHHHHHHHHhhcCCceEEEEech
Confidence 11111111111 0111111111111 11111111111111111111 11222232 33456778899999987
Q ss_pred ccccCccchhHHHHHhhhhcCcCccc-cccEEEeecCCcceeEEec
Q 011052 296 AFSRGFMSARSVMGFLSDVYPTAADE-IGKIHIIADDRVQGAVFDL 340 (494)
Q Consensus 296 ~~~~~~~~~~~i~~~i~~~~~~~~~~-ig~i~~~~~~~~~gs~~d~ 340 (494)
-++++++..+..+|+++.|..++- |-+|++..+|+..|+.++.
T Consensus 326 --waRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainF 369 (400)
T KOG0328|consen 326 --WARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINF 369 (400)
T ss_pred --hhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEEE
Confidence 477899999999999999887764 5555555666655655554
No 199
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=95.98 E-value=0.021 Score=65.95 Aligned_cols=90 Identities=17% Similarity=0.230 Sum_probs=70.2
Q ss_pred ccHHHHH-HHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEech
Q 011052 72 TSKRTIL-SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (494)
Q Consensus 72 ~~k~~~L-~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~ 145 (494)
.-|..+. ..++.....+.+++|.+||+..|++.++.+.+ .+.+..+++.++..++.++++.+++|+++|+|+|+
T Consensus 483 sGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp 562 (926)
T TIGR00580 483 FGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTH 562 (926)
T ss_pred ccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchH
Confidence 3454432 23344444568999999999999999998874 35678899999999999999999999999999998
Q ss_pred -hhhccCCCCcccEEEe
Q 011052 146 -VAARGLDIPNVDLIIH 161 (494)
Q Consensus 146 -~~~~GiDip~v~~VI~ 161 (494)
.+...+.+.++.+||.
T Consensus 563 ~ll~~~v~f~~L~llVI 579 (926)
T TIGR00580 563 KLLQKDVKFKDLGLLII 579 (926)
T ss_pred HHhhCCCCcccCCEEEe
Confidence 4445577888888773
No 200
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.94 E-value=0.094 Score=54.00 Aligned_cols=69 Identities=16% Similarity=0.196 Sum_probs=52.7
Q ss_pred CcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEech------hhhccCCCCccc
Q 011052 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD------VAARGLDIPNVD 157 (494)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~------~~~~GiDip~v~ 157 (494)
-+++|..+|++.+.+..+.++. .+.+.++.|+-+.+++-..+.. +-+|++||+ .++.-+++..|.
T Consensus 91 ~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~----npDii~ATpgr~~h~~vem~l~l~sve 166 (529)
T KOG0337|consen 91 LRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNE----NPDIIIATPGRLLHLGVEMTLTLSSVE 166 (529)
T ss_pred cceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhcc----CCCEEEecCceeeeeehheecccccee
Confidence 4999999999999988777763 3566666676666666666654 678999998 455567888999
Q ss_pred EEEe
Q 011052 158 LIIH 161 (494)
Q Consensus 158 ~VI~ 161 (494)
+||.
T Consensus 167 yVVf 170 (529)
T KOG0337|consen 167 YVVF 170 (529)
T ss_pred eeee
Confidence 9993
No 201
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=95.75 E-value=0.21 Score=55.98 Aligned_cols=102 Identities=20% Similarity=0.234 Sum_probs=72.1
Q ss_pred HHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCC
Q 011052 75 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDI 153 (494)
Q Consensus 75 ~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDi 153 (494)
......++..+..+.++-|||.|...++.+++.... ..++..+++.-+..+ ++.+ ++++|+|=|+++..|+++
T Consensus 269 ~tF~~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d----v~~W--~~~~VviYT~~itvG~Sf 342 (824)
T PF02399_consen 269 TTFFSELLARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED----VESW--KKYDVVIYTPVITVGLSF 342 (824)
T ss_pred hhHHHHHHHHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc----cccc--cceeEEEEeceEEEEecc
Confidence 344556666666778889999999999999988876 456777777655442 2233 478999999999999999
Q ss_pred Cccc--EEEec--CCC--CChhhHHHHhcccCCCC
Q 011052 154 PNVD--LIIHY--ELP--NDPETFVHRSGRTGRAG 182 (494)
Q Consensus 154 p~v~--~VI~~--~~P--~~~~~y~qr~GR~gR~G 182 (494)
.... -|.-| ... .+..+..|++||+-...
T Consensus 343 ~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~ 377 (824)
T PF02399_consen 343 EEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLL 377 (824)
T ss_pred chhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhc
Confidence 6543 23333 222 35556899999976554
No 202
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=95.61 E-value=0.13 Score=57.08 Aligned_cols=60 Identities=18% Similarity=0.225 Sum_probs=53.0
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechh
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~ 146 (494)
..+.+||.+|+++.+.+..+.|.. ++.+..+++..+..++..+++..+.+.++++++|+.
T Consensus 64 ~~g~tlVisPl~sL~~dqv~~l~~~gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe 124 (607)
T PRK11057 64 LDGLTLVVSPLISLMKDQVDQLLANGVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPE 124 (607)
T ss_pred cCCCEEEEecHHHHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChH
Confidence 457899999999999988888875 788889999999999999999999999999999963
No 203
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.43 E-value=0.095 Score=52.13 Aligned_cols=249 Identities=15% Similarity=0.173 Sum_probs=119.9
Q ss_pred CcEEEEcCChhhHHH---HHHHHhc--cCceeeecCCCCHHHHHHHHccccCCCeeEEEech-----hhhccC-CCCccc
Q 011052 89 GKTIVFTQTKRDADE---VSLALTS--IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARGL-DIPNVD 157 (494)
Q Consensus 89 ~~~IVF~~t~~~~~~---l~~~L~~--~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~-----~~~~Gi-Dip~v~ 157 (494)
-+++|.+||++.|-+ ++..|.+ ++.+++..|+.+-.+-..-+ +..+.++|+|+ .+..|+ |+.++.
T Consensus 154 IQ~~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl----~~~VH~~vgTPGRIlDL~~KgVa~ls~c~ 229 (459)
T KOG0326|consen 154 IQAIILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRL----NQTVHLVVGTPGRILDLAKKGVADLSDCV 229 (459)
T ss_pred eeEEEEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeee----cCceEEEEcCChhHHHHHhcccccchhce
Confidence 478999999997765 4555555 46788889997654433222 23789999997 566665 456665
Q ss_pred EEEe--------cCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHH-HHHHhCCCceec-----CCCCHH----
Q 011052 158 LIIH--------YELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS-LERDVGCKFEFV-----SPPVVE---- 219 (494)
Q Consensus 158 ~VI~--------~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~-le~~~~~~~~~~-----~~p~~~---- 219 (494)
.+|. .++-..++..+.-.- +...+++|+..-.-.++. +.+++..+.+.- .+.-..
T Consensus 230 ~lV~DEADKlLs~~F~~~~e~li~~lP-------~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~eLtl~GvtQyYa 302 (459)
T KOG0326|consen 230 ILVMDEADKLLSVDFQPIVEKLISFLP-------KERQILLYSATFPLTVKGFMDRHLKKPYEINLMEELTLKGVTQYYA 302 (459)
T ss_pred EEEechhhhhhchhhhhHHHHHHHhCC-------ccceeeEEecccchhHHHHHHHhccCcceeehhhhhhhcchhhhee
Confidence 5542 223344555555552 234455555433333322 233333332210 000000
Q ss_pred HHHHHHHHHHHHHHc-cCCccc-hhhhhHH--HHHHHhhcCHHHHHHHHHHHcCCCCCCCCcccccCCCCceEEEEecCC
Q 011052 220 DVLESSAEQVVATLN-GVHPES-VEFFTPT--AQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDS 295 (494)
Q Consensus 220 ~i~~~~~~~~~~~l~-~~~~~~-~~~f~~~--a~~l~~~~~~~~l~aal~~~~g~~~~~~~rsl~~~~~~~~t~~~~~~~ 295 (494)
-+.+...-..+..|- .+..++ +.+..++ .+-|.+.-..-.+.....|.- +.|.-++|-.-..+.|.++.++.+|.
T Consensus 303 fV~e~qKvhCLntLfskLqINQsIIFCNS~~rVELLAkKITelGyscyyiHak-M~Q~hRNrVFHdFr~G~crnLVctDL 381 (459)
T KOG0326|consen 303 FVEERQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYIHAK-MAQEHRNRVFHDFRNGKCRNLVCTDL 381 (459)
T ss_pred eechhhhhhhHHHHHHHhcccceEEEeccchHhHHHHHHHHhccchhhHHHHH-HHHhhhhhhhhhhhccccceeeehhh
Confidence 000011111111111 111111 1111111 111111111111111222211 12223444444556677777777765
Q ss_pred ccccCccchhHHHHHhhhhcCcCccc----cccEEEeecCCcceeEEecCHHHHHHHHhh
Q 011052 296 AFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDLPEEIAKELLNK 351 (494)
Q Consensus 296 ~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~~d~~~~~~~~~~~~ 351 (494)
--++++...+.-+|+.+.+..++. ||+.+++...+++..++.-.+...-.-++.
T Consensus 382 --~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~ 439 (459)
T KOG0326|consen 382 --FTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQ 439 (459)
T ss_pred --hhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHH
Confidence 355677666666677776655543 677766666666666776666554444444
No 204
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=95.42 E-value=0.026 Score=59.77 Aligned_cols=106 Identities=14% Similarity=0.212 Sum_probs=63.7
Q ss_pred CcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEech-----hh--hccCCCCcc
Q 011052 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VA--ARGLDIPNV 156 (494)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~-----~~--~~GiDip~v 156 (494)
--|||..||++.|-++++-|.+ .+.+-.+-|+..-.. +.-|-..++|||||+ -. .-.++.+++
T Consensus 142 lGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~-----E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~l 216 (758)
T KOG0343|consen 142 LGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKF-----ELERISQMNILVCTPGRLLQHMDENPNFSTSNL 216 (758)
T ss_pred ceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHH-----HHHhhhcCCeEEechHHHHHHhhhcCCCCCCcc
Confidence 4799999999999999999984 356666777765432 222334689999998 11 223444555
Q ss_pred cEEE--------ecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHh
Q 011052 157 DLII--------HYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDV 206 (494)
Q Consensus 157 ~~VI--------~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~ 206 (494)
.++| ++++-.+.+..+--+ ..-...++++..+...++.|.+..
T Consensus 217 QmLvLDEADR~LDMGFk~tL~~Ii~~l-------P~~RQTLLFSATqt~svkdLaRLs 267 (758)
T KOG0343|consen 217 QMLVLDEADRMLDMGFKKTLNAIIENL-------PKKRQTLLFSATQTKSVKDLARLS 267 (758)
T ss_pred eEEEeccHHHHHHHhHHHHHHHHHHhC-------ChhheeeeeecccchhHHHHHHhh
Confidence 5555 233333444443332 123344555666666666666653
No 205
>PTZ00424 helicase 45; Provisional
Probab=95.19 E-value=0.041 Score=57.49 Aligned_cols=70 Identities=16% Similarity=0.242 Sum_probs=48.3
Q ss_pred CCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhh------hccCCCCcc
Q 011052 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA------ARGLDIPNV 156 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~------~~GiDip~v 156 (494)
..++||++||++.|.++.+.+.. ...+..+.|+....+....+.. ..+|+|+|+-. ...+.+.++
T Consensus 96 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~Ivv~Tp~~l~~~l~~~~~~l~~i 171 (401)
T PTZ00424 96 ACQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKA----GVHMVVGTPGRVYDMIDKRHLRVDDL 171 (401)
T ss_pred CceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcC----CCCEEEECcHHHHHHHHhCCcccccc
Confidence 45899999999999999887763 2456667788766544433332 46899999732 234567788
Q ss_pred cEEEe
Q 011052 157 DLIIH 161 (494)
Q Consensus 157 ~~VI~ 161 (494)
++||.
T Consensus 172 ~lvVi 176 (401)
T PTZ00424 172 KLFIL 176 (401)
T ss_pred cEEEE
Confidence 87773
No 206
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=95.13 E-value=0.28 Score=54.19 Aligned_cols=60 Identities=15% Similarity=0.183 Sum_probs=53.4
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechh
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~ 146 (494)
..+.+||.+|++..+++..+.|.. ++.+..+|++++..++..+++....+.++||++|+.
T Consensus 52 ~~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe 112 (591)
T TIGR01389 52 LKGLTVVISPLISLMKDQVDQLRAAGVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPE 112 (591)
T ss_pred cCCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChh
Confidence 457899999999999888888875 788999999999999999999999999999999974
No 207
>PRK14873 primosome assembly protein PriA; Provisional
Probab=95.02 E-value=0.067 Score=59.62 Aligned_cols=91 Identities=19% Similarity=0.270 Sum_probs=72.7
Q ss_pred ccHHHHHHHHHHHh-ccCCcEEEEcCChhhHHHHHHHHhccC---ceeeecCCCCHHHHHHHHccccCCCeeEEEechhh
Q 011052 72 TSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTSII---ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 147 (494)
Q Consensus 72 ~~k~~~L~~ll~~~-~~~~~~IVF~~t~~~~~~l~~~L~~~~---~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~ 147 (494)
..|.++..+++... ..++++||.+|....+.++.+.|+..+ .+..+|+++++.+|.+...+.++|+.+|+|.|-.+
T Consensus 171 SGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSA 250 (665)
T PRK14873 171 EDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSA 250 (665)
T ss_pred CcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEccee
Confidence 35666666666543 457799999999999999999999644 58899999999999999999999999999999754
Q ss_pred hccCCCCcccEEEecC
Q 011052 148 ARGLDIPNVDLIIHYE 163 (494)
Q Consensus 148 ~~GiDip~v~~VI~~~ 163 (494)
. -.-+++..+||..+
T Consensus 251 v-FaP~~~LgLIIvdE 265 (665)
T PRK14873 251 V-FAPVEDLGLVAIWD 265 (665)
T ss_pred E-EeccCCCCEEEEEc
Confidence 2 34556777777443
No 208
>KOG4284 consensus DEAD box protein [Transcription]
Probab=94.95 E-value=0.092 Score=56.74 Aligned_cols=69 Identities=12% Similarity=0.189 Sum_probs=51.1
Q ss_pred CCcEEEEcCChhhHHHHHHHHhc------cCceeeecCCCCHHHHHHHHccccCCCeeEEEech-----hh-hccCCCCc
Q 011052 88 GGKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VA-ARGLDIPN 155 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~-----~~-~~GiDip~ 155 (494)
..+.+|.+||++.|-+|.+-+.. ++.|.++-|+.+...-..-|+ +++|+|.|+ +. -+-+|+..
T Consensus 93 ~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk-----~~rIvIGtPGRi~qL~el~~~n~s~ 167 (980)
T KOG4284|consen 93 HIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLK-----QTRIVIGTPGRIAQLVELGAMNMSH 167 (980)
T ss_pred cceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhh-----hceEEecCchHHHHHHHhcCCCccc
Confidence 45789999999999999888763 467888889877665443333 577999998 22 33478888
Q ss_pred ccEEEe
Q 011052 156 VDLIIH 161 (494)
Q Consensus 156 v~~VI~ 161 (494)
|++.|.
T Consensus 168 vrlfVL 173 (980)
T KOG4284|consen 168 VRLFVL 173 (980)
T ss_pred eeEEEe
Confidence 887663
No 209
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=94.82 E-value=0.17 Score=55.20 Aligned_cols=213 Identities=14% Similarity=0.141 Sum_probs=121.2
Q ss_pred CCcEEEEcCChhhHHHHHHHHh-ccCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccC-------CCCcccEE
Q 011052 88 GGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGL-------DIPNVDLI 159 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~-~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~Gi-------Dip~v~~V 159 (494)
.+-+||..|-....+.-.+.|. .++.++.+|+.++.+++..++..+..|.+++|.-+|.--.-- ..+-.-+|
T Consensus 57 ~G~TLVVSPLiSLM~DQV~~l~~~Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~v 136 (590)
T COG0514 57 EGLTLVVSPLISLMKDQVDQLEAAGIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVA 136 (590)
T ss_pred CCCEEEECchHHHHHHHHHHHHHcCceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEE
Confidence 5799999999887765444444 589999999999999999999999999999998777211000 11111223
Q ss_pred E-------ecC--CC---------------------------CChhhHHHHhcccC----CC--CCCceEEEecChh-hH
Q 011052 160 I-------HYE--LP---------------------------NDPETFVHRSGRTG----RA--GKEGTAILMFTSS-QR 196 (494)
Q Consensus 160 I-------~~~--~P---------------------------~~~~~y~qr~GR~g----R~--G~~g~~i~l~~~~-e~ 196 (494)
| +++ +- ...++.++..+=.. +. .++...+.+.... ..
T Consensus 137 IDEAHCiSqWGhdFRP~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRpNi~~~v~~~~~~~ 216 (590)
T COG0514 137 IDEAHCISQWGHDFRPDYRRLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDRPNLALKVVEKGEPS 216 (590)
T ss_pred echHHHHhhcCCccCHhHHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCchhhhhhhhcccHH
Confidence 3 221 11 11223333332110 00 0111112222211 11
Q ss_pred HHHHHHHH---H-hCCCceecCCCCHHHHHHHHHHHHHHHHccCCccchhhhhHHHHHHHhhcCHHHHHHHHHHHcCCCC
Q 011052 197 RTVRSLER---D-VGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSR 272 (494)
Q Consensus 197 ~~l~~le~---~-~~~~~~~~~~p~~~~i~~~~~~~~~~~l~~~~~~~~~~f~~~a~~l~~~~~~~~l~aal~~~~g~~~ 272 (494)
..+..|.. . .+.-+..+..-...|.+..++...--.....|...-...++..++.+...+...++|+.|-.+|.+.
T Consensus 217 ~q~~fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdK 296 (590)
T COG0514 217 DQLAFLATVLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDK 296 (590)
T ss_pred HHHHHHHhhccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCC
Confidence 11222221 1 1112333332223333333333322222334555566677777777777778889999999999988
Q ss_pred CCCCcccccCCCCceEEEEecCCccccCccchhHHHHHhhhhcCcCcc
Q 011052 273 PPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 320 (494)
Q Consensus 273 ~~~~rsl~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~ 320 (494)
| .+++++-.+. |.++.++.-..++..+|
T Consensus 297 p------------dVRfViH~~l--------P~s~EsYyQE~GRAGRD 324 (590)
T COG0514 297 P------------DVRFVIHYDL--------PGSIESYYQETGRAGRD 324 (590)
T ss_pred C------------CceEEEEecC--------CCCHHHHHHHHhhccCC
Confidence 7 6888888777 88888888877665553
No 210
>PRK13767 ATP-dependent helicase; Provisional
Probab=94.62 E-value=0.85 Score=52.86 Aligned_cols=69 Identities=17% Similarity=0.196 Sum_probs=50.6
Q ss_pred CcEEEEcCChhhHHHHHHHHhc-----------------cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhh-hcc
Q 011052 89 GKTIVFTQTKRDADEVSLALTS-----------------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA-ARG 150 (494)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~-----------------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~-~~G 150 (494)
.++|+.+||++.+.+++..|.. .+.+...||+.++.++.+.+.. ..+|||+|+-- ..-
T Consensus 85 ~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~----~p~IlVtTPE~L~~l 160 (876)
T PRK13767 85 VYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKK----PPHILITTPESLAIL 160 (876)
T ss_pred eEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhC----CCCEEEecHHHHHHH
Confidence 4699999999999988765431 3467889999999999887765 67899999832 111
Q ss_pred C-------CCCcccEEEe
Q 011052 151 L-------DIPNVDLIIH 161 (494)
Q Consensus 151 i-------Dip~v~~VI~ 161 (494)
+ .+.++++||.
T Consensus 161 l~~~~~~~~l~~l~~VVI 178 (876)
T PRK13767 161 LNSPKFREKLRTVKWVIV 178 (876)
T ss_pred hcChhHHHHHhcCCEEEE
Confidence 1 3467787773
No 211
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=94.43 E-value=0.14 Score=58.28 Aligned_cols=60 Identities=20% Similarity=0.376 Sum_probs=52.1
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhcc------Cceee-ecCCCCHHHHHHHHccccCCCeeEEEechh
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTSI------IASEA-LHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~~------~~~~~-lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~ 146 (494)
+++++++.+||...+.++++.|++. +.+.. +|+.|+.++++.++++|.+|..+|||+|..
T Consensus 124 kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~ 190 (1187)
T COG1110 124 KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQ 190 (1187)
T ss_pred cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHH
Confidence 5689999999999999999999741 33322 999999999999999999999999999974
No 212
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.38 E-value=0.12 Score=54.80 Aligned_cols=182 Identities=19% Similarity=0.254 Sum_probs=113.7
Q ss_pred CcEEEEeecCChHHHHHHHHHcCCCc-EEEecccccc----ccccceEEEE--EEcC-----cccHHHH-HHHHHHHhcc
Q 011052 21 RQSMLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDE----KLAEGIKLYA--ISTT-----ATSKRTI-LSDLITVYAK 87 (494)
Q Consensus 21 ~q~ll~SATlp~~i~~l~~~~l~~p~-~i~~~~~~~~----~~~~~i~~~~--~~~~-----~~~k~~~-L~~ll~~~~~ 87 (494)
+|+|+||+-..+.+..+...++.+-. .|........ .+...+.|.+ +.+. ...+... +..++-.+.+
T Consensus 470 rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~D~RFkyFv~~ImPq~~k 549 (698)
T KOG2340|consen 470 RQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETPDARFKYFVDKIMPQLIK 549 (698)
T ss_pred HHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCchHHHHHHHHhhchhhcc
Confidence 59999999998888888888877532 1211100000 0011111111 1111 1122221 1222222222
Q ss_pred --CCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEech--hhhccCCCCcccEEEec
Q 011052 88 --GGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD--VAARGLDIPNVDLIIHY 162 (494)
Q Consensus 88 --~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~--~~~~GiDip~v~~VI~~ 162 (494)
..-+|||.|+--+--.|...+++ .+....+|-=.+...-.++-+-|-.|...||+-|. -.-+--+|..|.-||.|
T Consensus 550 ~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVfY 629 (698)
T KOG2340|consen 550 RTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVFY 629 (698)
T ss_pred cccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEEe
Confidence 24689999999988888888885 44444455444455555666778889999999997 44577889999999999
Q ss_pred CCCCChhhH---HHHhcccCCCC----CCceEEEecChhhHHHHHHH
Q 011052 163 ELPNDPETF---VHRSGRTGRAG----KEGTAILMFTSSQRRTVRSL 202 (494)
Q Consensus 163 ~~P~~~~~y---~qr~GR~gR~G----~~g~~i~l~~~~e~~~l~~l 202 (494)
.+|..+.-| +-+.+|+.-.| ..-.|.++|+.-|.-.|..+
T Consensus 630 qpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~i 676 (698)
T KOG2340|consen 630 QPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENI 676 (698)
T ss_pred cCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHh
Confidence 999999877 56777765433 34578888988876555444
No 213
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=94.11 E-value=0.21 Score=44.54 Aligned_cols=47 Identities=21% Similarity=0.330 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHccccCCC-eeEEEechhhhccCCCCc--ccEEEecCCCC
Q 011052 120 DISQHQRERTLNGFRQGK-FTVLVATDVAARGLDIPN--VDLIIHYELPN 166 (494)
Q Consensus 120 ~~~~~~R~~~l~~Fr~g~-~~iLVaT~~~~~GiDip~--v~~VI~~~~P~ 166 (494)
+....+...+++.|++.. ..||++|.-..+|||+|+ ++.||...+|.
T Consensus 30 ~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 30 GEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred CCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCC
Confidence 344545677888887643 269999988999999986 46788777663
No 214
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=94.03 E-value=0.35 Score=46.43 Aligned_cols=7 Identities=14% Similarity=0.178 Sum_probs=3.4
Q ss_pred CceEEEE
Q 011052 470 DRYIFFL 476 (494)
Q Consensus 470 ~~~~~~~ 476 (494)
++.+++-
T Consensus 126 ~~kvEyR 132 (317)
T KOG1596|consen 126 DGKVEYR 132 (317)
T ss_pred CCcEEEE
Confidence 4455543
No 215
>PRK14701 reverse gyrase; Provisional
Probab=93.82 E-value=0.13 Score=62.78 Aligned_cols=60 Identities=22% Similarity=0.316 Sum_probs=53.2
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhc-------cCceeeecCCCCHHHHHHHHccccCCCeeEEEechh
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTS-------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~ 146 (494)
++.++||.+||++.+.++++.+.. .+.+..+||+++..++.++++++++|..+|||+|+-
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 456899999999999999999874 246788999999999999999999999999999983
No 216
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=93.75 E-value=0.16 Score=56.77 Aligned_cols=90 Identities=23% Similarity=0.286 Sum_probs=73.0
Q ss_pred CcccHHHHHHHHHHHh-ccCCcEEEEcCChhhHHHHHHHHhc--cCceeeecCCCCHHHHHHHHccccCCCeeEEEechh
Q 011052 70 TATSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTS--IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (494)
Q Consensus 70 ~~~~k~~~L~~ll~~~-~~~~~~IVF~~t~~~~~~l~~~L~~--~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~ 146 (494)
.-..|.++..+++... ..++++||.+|-+....++.+.++. +.++.++|+++++.+|..+..+.++|+.+|+|.|-.
T Consensus 226 TGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRS 305 (730)
T COG1198 226 TGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRS 305 (730)
T ss_pred CCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEech
Confidence 3456777776666544 5667999999999999999999986 467899999999999999999999999999999965
Q ss_pred hhccCCCCcccEEE
Q 011052 147 AARGLDIPNVDLII 160 (494)
Q Consensus 147 ~~~GiDip~v~~VI 160 (494)
| --.-++++-+||
T Consensus 306 A-lF~Pf~~LGLII 318 (730)
T COG1198 306 A-LFLPFKNLGLII 318 (730)
T ss_pred h-hcCchhhccEEE
Confidence 3 234456667666
No 217
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=93.62 E-value=0.13 Score=61.02 Aligned_cols=60 Identities=18% Similarity=0.361 Sum_probs=50.9
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhc-----cCce---eeecCCCCHHHHHHHHccccCCCeeEEEechh
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTS-----IIAS---EALHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~---~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~ 146 (494)
.+.++||.+||++.|.++++.+.. ++.+ ..+||+++..++...++.++++..+|||+|+-
T Consensus 120 ~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~ 187 (1171)
T TIGR01054 120 KGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTM 187 (1171)
T ss_pred cCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHH
Confidence 457899999999999999998874 2222 35899999999999999999988999999983
No 218
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=93.31 E-value=0.23 Score=44.32 Aligned_cols=41 Identities=22% Similarity=0.407 Sum_probs=29.9
Q ss_pred HHHHHHccccCCCe---eEEEechh--hhccCCCCc--ccEEEecCCC
Q 011052 125 QRERTLNGFRQGKF---TVLVATDV--AARGLDIPN--VDLIIHYELP 165 (494)
Q Consensus 125 ~R~~~l~~Fr~g~~---~iLVaT~~--~~~GiDip~--v~~VI~~~~P 165 (494)
+..++++.|++..- .||+++.- .++|||+|+ ++.||...+|
T Consensus 32 ~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glP 79 (142)
T smart00491 32 ETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIP 79 (142)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecC
Confidence 34567777775432 58888876 899999987 5678877766
No 219
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=93.25 E-value=1.1 Score=47.70 Aligned_cols=84 Identities=12% Similarity=0.297 Sum_probs=52.5
Q ss_pred CCcEEEEcCChhhHHHHHHHHhcc-------CceeeecCCCCHHHHHHHHccccCCCeeEEEech-------hhhccCCC
Q 011052 88 GGKTIVFTQTKRDADEVSLALTSI-------IASEALHGDISQHQRERTLNGFRQGKFTVLVATD-------VAARGLDI 153 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~~-------~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~-------~~~~GiDi 153 (494)
+.-+||.+||++.|.++++.+++- +++..+-|.--..++.+ .|+ .++|||+|+ ---..|++
T Consensus 211 G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKAR----LRK-GiNILIgTPGRLvDHLknT~~i~~ 285 (708)
T KOG0348|consen 211 GPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKAR----LRK-GINILIGTPGRLVDHLKNTKSIKF 285 (708)
T ss_pred CceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHH----Hhc-CceEEEcCchHHHHHHhccchhee
Confidence 347899999999999999988752 23333444433333332 233 689999998 22345666
Q ss_pred CcccEEE--------ecCCCCChhhHHHHhc
Q 011052 154 PNVDLII--------HYELPNDPETFVHRSG 176 (494)
Q Consensus 154 p~v~~VI--------~~~~P~~~~~y~qr~G 176 (494)
..+++|| ..++-.++..++-.++
T Consensus 286 s~LRwlVlDEaDrlleLGfekdit~Il~~v~ 316 (708)
T KOG0348|consen 286 SRLRWLVLDEADRLLELGFEKDITQILKAVH 316 (708)
T ss_pred eeeeEEEecchhHHHhccchhhHHHHHHHHh
Confidence 7777777 2444556555554443
No 220
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=93.03 E-value=0.065 Score=64.00 Aligned_cols=94 Identities=21% Similarity=0.379 Sum_probs=77.1
Q ss_pred CcEEEEcCChhhHHHHHHHHhc--cCceeeecCCCC-----------HHHHHHHHccccCCCeeEEEechhhhccCCCCc
Q 011052 89 GKTIVFTQTKRDADEVSLALTS--IIASEALHGDIS-----------QHQRERTLNGFRQGKFTVLVATDVAARGLDIPN 155 (494)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~--~~~~~~lhg~~~-----------~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~ 155 (494)
-..|+||+.+..+..+.+.+.+ ...+..+.|.+. +..+.+++..|+...+++|++|.++..|+|++.
T Consensus 293 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~ 372 (1606)
T KOG0701|consen 293 LSGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPK 372 (1606)
T ss_pred hhheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhh
Confidence 3569999999999988888874 233333444322 224678999999999999999999999999999
Q ss_pred ccEEEecCCCCChhhHHHHhcccCCCC
Q 011052 156 VDLIIHYELPNDPETFVHRSGRTGRAG 182 (494)
Q Consensus 156 v~~VI~~~~P~~~~~y~qr~GR~gR~G 182 (494)
++.|+.++.|.....|+|..||+-.+.
T Consensus 373 ~~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 373 CNLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhhheeccCcchHHHHHHhhcccccch
Confidence 999999999999999999999977654
No 221
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=91.34 E-value=1.3 Score=41.32 Aligned_cols=69 Identities=22% Similarity=0.325 Sum_probs=51.1
Q ss_pred CCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechh-----hhcc-CCCCcc
Q 011052 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AARG-LDIPNV 156 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~-----~~~G-iDip~v 156 (494)
..++||.|||++.+.+++..+.. .+.+..+||+.+..+....++ ....|+|+|+. +..+ .+++++
T Consensus 69 ~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~~~l~~~l~~~~~~~~~l 144 (203)
T cd00268 69 GPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK----RGPHIVVATPGRLLDLLERGKLDLSKV 144 (203)
T ss_pred CceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----CCCCEEEEChHHHHHHHHcCCCChhhC
Confidence 45899999999999998887753 366788999998877665555 46789999962 2222 556677
Q ss_pred cEEE
Q 011052 157 DLII 160 (494)
Q Consensus 157 ~~VI 160 (494)
+++|
T Consensus 145 ~~lI 148 (203)
T cd00268 145 KYLV 148 (203)
T ss_pred CEEE
Confidence 7766
No 222
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=90.89 E-value=1.7 Score=45.29 Aligned_cols=59 Identities=20% Similarity=0.203 Sum_probs=46.7
Q ss_pred CcEEEEcCChhhHHHHHHHHhc-------cCceeeecCCCCHHHHHHHHccccCCCeeEEEech-----hhhccC
Q 011052 89 GKTIVFTQTKRDADEVSLALTS-------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARGL 151 (494)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~-------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~-----~~~~Gi 151 (494)
..++|.+||++.|++++..+.+ .+.+.-+..+|+......++.. ..+|+|+|+ .++.|+
T Consensus 94 ~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d----~pdIvV~TP~~ll~~~~~~~ 164 (569)
T KOG0346|consen 94 PSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMD----LPDIVVATPAKLLRHLAAGV 164 (569)
T ss_pred ceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHcc----CCCeEEeChHHHHHHHhhcc
Confidence 4789999999999999988863 3566777888888877767666 788999998 455565
No 223
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=90.73 E-value=0.92 Score=44.40 Aligned_cols=156 Identities=19% Similarity=0.268 Sum_probs=85.9
Q ss_pred cEEEEeecCChHHH------HHHHHHcCCCcEEEeccccccccccceEEEEEEcCc-ccHHHHHHHHHHHh-ccCCcEEE
Q 011052 22 QSMLFSATMPSWVK------KLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA-TSKRTILSDLITVY-AKGGKTIV 93 (494)
Q Consensus 22 q~ll~SATlp~~i~------~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~L~~ll~~~-~~~~~~IV 93 (494)
.+-+++-|.+.... +++++|-.. .|.|..+.... .+....+..++..- .+.-|+||
T Consensus 4 kIGivTgtvSq~ed~~r~Ae~l~~~Yg~~----------------~I~h~tyPdnf~~e~EttIskI~~lAdDp~mKaIV 67 (275)
T PF12683_consen 4 KIGIVTGTVSQSEDEYRGAEELIKKYGDV----------------MIKHVTYPDNFMSEQETTISKIVSLADDPDMKAIV 67 (275)
T ss_dssp EEEEEE--TTT-HHHHHHHHHHHHHHHHH----------------EEEEEE--TTGGGCHHHHHHHHHGGGG-TTEEEEE
T ss_pred EEEEEeCCcccChHHHHHHHHHHHHhCcc----------------eEEEEeCCCcccchHHHHHHHHHHhccCCCccEEE
Confidence 46678888876543 455555432 24444444332 23445566666532 35569999
Q ss_pred EcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCC------cccEEEecCCCC
Q 011052 94 FTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP------NVDLIIHYELPN 166 (494)
Q Consensus 94 F~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip------~v~~VI~~~~P~ 166 (494)
+|+...-+-...+.+++ .-.+..+-|.+. +--.++.. ..+|.+.+|...+|-.++ .++..|||.+|.
T Consensus 68 v~q~vpGt~~af~kIkekRpDIl~ia~~~~--EDp~~i~~----~aDi~~~~D~~~~G~~i~~~Ak~mGAktFVh~sfpr 141 (275)
T PF12683_consen 68 VSQAVPGTAEAFRKIKEKRPDILLIAGEPH--EDPEVISS----AADIVVNPDEISRGYTIVWAAKKMGAKTFVHYSFPR 141 (275)
T ss_dssp EE-SS---HHHHHHHHHH-TTSEEEESS----S-HHHHHH----HSSEEEE--HHHHHHHHHHHHHHTT-S-EEEEEETT
T ss_pred EeCCCcchHHHHHHHHhcCCCeEEEcCCCc--CCHHHHhh----ccCeEeccchhhccHHHHHHHHHcCCceEEEEechh
Confidence 99988887777777774 334555555432 22334444 578999999999999886 456799999998
Q ss_pred ChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceecCCCCH
Q 011052 167 DPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVV 218 (494)
Q Consensus 167 ~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~p~~ 218 (494)
+.. |..-.= .+..++.-.+.++++|.++..|.+
T Consensus 142 hms-~~~l~~------------------Rr~~M~~~C~~lGi~fv~~taPDP 174 (275)
T PF12683_consen 142 HMS-YELLAR------------------RRDIMEEACKDLGIKFVEVTAPDP 174 (275)
T ss_dssp GGG-SHHHHH------------------HHHHHHHHHHHCT--EEEEEE---
T ss_pred hcc-hHHHHH------------------HHHHHHHHHHHcCCeEEEEeCCCC
Confidence 766 322221 245677778888999988776653
No 224
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=90.56 E-value=1.9 Score=45.71 Aligned_cols=71 Identities=30% Similarity=0.352 Sum_probs=58.2
Q ss_pred CCcEEEEcCChhhHHHHHHHHhc--cC---ceeeecCCCCHHHHHHHHccccCCCeeEEEech------hhhccCCCCcc
Q 011052 88 GGKTIVFTQTKRDADEVSLALTS--II---ASEALHGDISQHQRERTLNGFRQGKFTVLVATD------VAARGLDIPNV 156 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~--~~---~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~------~~~~GiDip~v 156 (494)
++++|+.+||+-.+.+=++.+.+ ++ .++.+.|..++++|...... .+|+|||| +.+--||+.++
T Consensus 58 ~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w~~-----~kVfvaTPQvveNDl~~Grid~~dv 132 (542)
T COG1111 58 GGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELWAK-----KKVFVATPQVVENDLKAGRIDLDDV 132 (542)
T ss_pred CCeEEEecCCchHHHHHHHHHHHHhCCChhheeeecCCCChHHHHHHHhh-----CCEEEeccHHHHhHHhcCccChHHc
Confidence 34899999999999998888875 33 57899999999999988764 57999997 55556999999
Q ss_pred cEEEecC
Q 011052 157 DLIIHYE 163 (494)
Q Consensus 157 ~~VI~~~ 163 (494)
.++|.-.
T Consensus 133 ~~lifDE 139 (542)
T COG1111 133 SLLIFDE 139 (542)
T ss_pred eEEEech
Confidence 9988433
No 225
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=90.51 E-value=1.8 Score=38.69 Aligned_cols=68 Identities=21% Similarity=0.314 Sum_probs=49.9
Q ss_pred CcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHH-HHHHHHccccCCCeeEEEechh------hhccCCCCcc
Q 011052 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQH-QRERTLNGFRQGKFTVLVATDV------AARGLDIPNV 156 (494)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~-~R~~~l~~Fr~g~~~iLVaT~~------~~~GiDip~v 156 (494)
.++||.||+++.++++++.+.+ .+.+..+|++.+.. +....+ .+..+|+|+|+. ....+++..+
T Consensus 45 ~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilv~T~~~l~~~~~~~~~~~~~~ 120 (169)
T PF00270_consen 45 ARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSISEDQREVL----SNQADILVTTPEQLLDLISNGKINISRL 120 (169)
T ss_dssp SEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHH----HTTSSEEEEEHHHHHHHHHTTSSTGTTE
T ss_pred ceEEEEeecccccccccccccccccccccccccccccccccccccccc----cccccccccCcchhhccccccccccccc
Confidence 4999999999999999998874 25678899998855 444444 347889999972 2223466667
Q ss_pred cEEE
Q 011052 157 DLII 160 (494)
Q Consensus 157 ~~VI 160 (494)
++||
T Consensus 121 ~~iV 124 (169)
T PF00270_consen 121 SLIV 124 (169)
T ss_dssp SEEE
T ss_pred eeec
Confidence 7666
No 226
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=90.44 E-value=0.74 Score=50.95 Aligned_cols=109 Identities=20% Similarity=0.289 Sum_probs=87.7
Q ss_pred CCcEEEEcCChhhHHHHHHHHhc-cC------------------ceeeecCCCCHHHHHHHHccccCCC---eeEEEech
Q 011052 88 GGKTIVFTQTKRDADEVSLALTS-II------------------ASEALHGDISQHQRERTLNGFRQGK---FTVLVATD 145 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~-~~------------------~~~~lhg~~~~~~R~~~l~~Fr~g~---~~iLVaT~ 145 (494)
+.++|||.......+.|.+.|.+ .+ ...-+.|-.+..+|++.+++|.+.- .-+|++|-
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 46889999888888888777763 11 2235778889999999999998632 35788999
Q ss_pred hhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhH
Q 011052 146 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQR 196 (494)
Q Consensus 146 ~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~ 196 (494)
...-||++-..+-+|.+|..|++.--.|.+-|+-|.|.+-.|+++-.-.|.
T Consensus 799 ag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~ 849 (1387)
T KOG1016|consen 799 AGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDN 849 (1387)
T ss_pred cccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhh
Confidence 999999998888999999999999999999999999988888886444443
No 227
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=90.40 E-value=1.3 Score=42.76 Aligned_cols=7 Identities=29% Similarity=0.553 Sum_probs=2.9
Q ss_pred CCceEEE
Q 011052 469 RDRYIFF 475 (494)
Q Consensus 469 ~~~~~~~ 475 (494)
|-..+|+
T Consensus 89 Rh~GVfi 95 (317)
T KOG1596|consen 89 RHAGVFI 95 (317)
T ss_pred cccceEE
Confidence 3344444
No 228
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=90.17 E-value=0.96 Score=49.73 Aligned_cols=83 Identities=18% Similarity=0.287 Sum_probs=69.9
Q ss_pred HHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechh-hhccCC
Q 011052 79 SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-AARGLD 152 (494)
Q Consensus 79 ~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~-~~~GiD 152 (494)
..++..+..+.++...+||.-.|++-++.+.+ ++.+..+.|.+...+|.+++++..+|.++|+|.|-+ +...++
T Consensus 302 laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~ 381 (677)
T COG1200 302 LAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVE 381 (677)
T ss_pred HHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhccee
Confidence 34455566778999999999999888887764 567999999999999999999999999999999975 556788
Q ss_pred CCcccEEEe
Q 011052 153 IPNVDLIIH 161 (494)
Q Consensus 153 ip~v~~VI~ 161 (494)
+.++-+||.
T Consensus 382 F~~LgLVIi 390 (677)
T COG1200 382 FHNLGLVII 390 (677)
T ss_pred ecceeEEEE
Confidence 888887774
No 229
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=89.58 E-value=0.14 Score=54.71 Aligned_cols=71 Identities=15% Similarity=0.358 Sum_probs=45.2
Q ss_pred CCcEEEEcCChhhHHHHHHHHhcc-------CceeeecCCCCHHHHHHHHccccCCCeeEEEech-----hhhcc---CC
Q 011052 88 GGKTIVFTQTKRDADEVSLALTSI-------IASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARG---LD 152 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~~-------~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~-----~~~~G---iD 152 (494)
+-+++|..+|++.|.+++....+. +.+..++....+.++...+. ...+++||.|+ ++..+ +|
T Consensus 209 gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~---~~k~dili~TP~ri~~~~~~~~~~id 285 (593)
T KOG0344|consen 209 GLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLS---DEKYDILISTPMRIVGLLGLGKLNID 285 (593)
T ss_pred ceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhH---HHHHHHHhcCHHHHHHHhcCCCccch
Confidence 348899999999999999888642 23333444433333222111 23578999998 33443 68
Q ss_pred CCcccEEEe
Q 011052 153 IPNVDLIIH 161 (494)
Q Consensus 153 ip~v~~VI~ 161 (494)
+..|.++|.
T Consensus 286 l~~V~~lV~ 294 (593)
T KOG0344|consen 286 LSKVEWLVV 294 (593)
T ss_pred hheeeeEee
Confidence 888887773
No 230
>PRK09401 reverse gyrase; Reviewed
Probab=89.38 E-value=1 Score=53.55 Aligned_cols=73 Identities=22% Similarity=0.336 Sum_probs=53.9
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhc-----cCce--eeecCCCCHHHHHHHHccccCCCeeEEEech-----hhhccCCCC
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTS-----IIAS--EALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARGLDIP 154 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~--~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~-----~~~~GiDip 154 (494)
++.++||.+||++.|.++++.++. .+.+ ...|++++..++.+..+.+.++..+|+|+|+ ... .+...
T Consensus 122 ~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~-~l~~~ 200 (1176)
T PRK09401 122 KGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD-ELPKK 200 (1176)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH-hcccc
Confidence 467999999999999999999874 2233 3446667778888888888888899999997 222 33334
Q ss_pred cccEEE
Q 011052 155 NVDLII 160 (494)
Q Consensus 155 ~v~~VI 160 (494)
.+++||
T Consensus 201 ~~~~lV 206 (1176)
T PRK09401 201 KFDFVF 206 (1176)
T ss_pred ccCEEE
Confidence 466665
No 231
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=89.31 E-value=0.28 Score=50.00 Aligned_cols=55 Identities=15% Similarity=0.115 Sum_probs=39.6
Q ss_pred cccCCCCceEEEEecCCccccCccchhHHHHHhhhhcCcCccc-cccEEEeecCCcce
Q 011052 279 LINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE-IGKIHIIADDRVQG 335 (494)
Q Consensus 279 l~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~-ig~i~~~~~~~~~g 335 (494)
+...+.|..++++.++. .+++++...+..+++.+.|..++. |-++++..++++.|
T Consensus 306 ~~ef~~gssrvlIttdl--~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg 361 (397)
T KOG0327|consen 306 MREFRSGSSRVLITTDL--LARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKG 361 (397)
T ss_pred HHHhhcCCceEEeeccc--cccccchhhcceeeeeccccchhhhhhhcccccccCCCc
Confidence 34456788899999998 688999999999999999876654 33444444444444
No 232
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=89.27 E-value=14 Score=42.21 Aligned_cols=68 Identities=21% Similarity=0.250 Sum_probs=52.0
Q ss_pred cEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechh-hhccC-------CCCcc
Q 011052 90 KTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-AARGL-------DIPNV 156 (494)
Q Consensus 90 ~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~-~~~Gi-------Dip~v 156 (494)
.||-.+|-|+....+...|.. ++.+.+-||++++.+|.+..++ ..+|||+|+. ++--+ .+.+|
T Consensus 75 ~~lYIsPLkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~----PPdILiTTPEsL~lll~~~~~r~~l~~v 150 (814)
T COG1201 75 YALYISPLKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKN----PPHILITTPESLAILLNSPKFRELLRDV 150 (814)
T ss_pred EEEEeCcHHHHHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCC----CCcEEEeChhHHHHHhcCHHHHHHhcCC
Confidence 677778889888888877762 6888999999999999987776 8899999982 11111 23578
Q ss_pred cEEEe
Q 011052 157 DLIIH 161 (494)
Q Consensus 157 ~~VI~ 161 (494)
.+||-
T Consensus 151 r~VIV 155 (814)
T COG1201 151 RYVIV 155 (814)
T ss_pred cEEEe
Confidence 88883
No 233
>PRK13766 Hef nuclease; Provisional
Probab=88.77 E-value=4.3 Score=46.44 Aligned_cols=70 Identities=26% Similarity=0.397 Sum_probs=54.0
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhcc--C---ceeeecCCCCHHHHHHHHccccCCCeeEEEechh------hhccCCCCc
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTSI--I---ASEALHGDISQHQRERTLNGFRQGKFTVLVATDV------AARGLDIPN 155 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~~--~---~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~------~~~GiDip~ 155 (494)
+..++||.|||+..+++.++.+.+. + .+..++|+.+..+|.+.... .+|+|+|+- ...-+++.+
T Consensus 57 ~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r~~~~~~-----~~iiv~T~~~l~~~l~~~~~~~~~ 131 (773)
T PRK13766 57 KGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAELWEK-----AKVIVATPQVIENDLIAGRISLED 131 (773)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHHHhC-----CCEEEECHHHHHHHHHcCCCChhh
Confidence 4689999999999999988888752 2 67789999999988776653 579999972 234466777
Q ss_pred ccEEEe
Q 011052 156 VDLIIH 161 (494)
Q Consensus 156 v~~VI~ 161 (494)
+++||.
T Consensus 132 ~~liVv 137 (773)
T PRK13766 132 VSLLIF 137 (773)
T ss_pred CcEEEE
Confidence 888774
No 234
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=88.41 E-value=1.2 Score=54.04 Aligned_cols=70 Identities=16% Similarity=0.210 Sum_probs=54.6
Q ss_pred CCcEEEEcCChhhHHHHHHHHhc-----------------cCceeeecCCCCHHHHHHHHccccCCCeeEEEechh----
Q 011052 88 GGKTIVFTQTKRDADEVSLALTS-----------------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV---- 146 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~-----------------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~---- 146 (494)
+.++|+.+|+++.+.++.+.|+. .+.+...||+.++.+|.+.+++ ..+|||+|+.
T Consensus 37 ~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~vrtGDt~~~eR~rll~~----ppdILVTTPEsL~~ 112 (1490)
T PRK09751 37 TSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQERSKLTRN----PPDILITTPESLYL 112 (1490)
T ss_pred CCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEEEEECCCCHHHHHHHhcC----CCCEEEecHHHHHH
Confidence 35899999999999999887642 3678899999999999887765 6789999983
Q ss_pred -hh-cc-CCCCcccEEEe
Q 011052 147 -AA-RG-LDIPNVDLIIH 161 (494)
Q Consensus 147 -~~-~G-iDip~v~~VI~ 161 (494)
+. +. ..+.+|++||.
T Consensus 113 LLtsk~r~~L~~Vr~VIV 130 (1490)
T PRK09751 113 MLTSRARETLRGVETVII 130 (1490)
T ss_pred HHhhhhhhhhccCCEEEE
Confidence 22 22 25678888883
No 235
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=87.10 E-value=0.24 Score=55.20 Aligned_cols=118 Identities=15% Similarity=0.191 Sum_probs=93.1
Q ss_pred ccHHHHHHHHHHHhc-cC-CcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCC-e-eEEEechh
Q 011052 72 TSKRTILSDLITVYA-KG-GKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGK-F-TVLVATDV 146 (494)
Q Consensus 72 ~~k~~~L~~ll~~~~-~~-~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~-~-~iLVaT~~ 146 (494)
..|...+.+++.... .. .++|||+.-..-+..+...|.. .+....+-|.|+..+|.+.+..|..+. . -.+++..+
T Consensus 521 s~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slka 600 (674)
T KOG1001|consen 521 SSKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKA 600 (674)
T ss_pred hhhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHH
Confidence 344444455554331 11 3999999999988888888774 566777889999999999999998543 2 24578889
Q ss_pred hhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEE
Q 011052 147 AARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAIL 189 (494)
Q Consensus 147 ~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~ 189 (494)
...|+++-...||+..|+-+++..--|.+-|+.|-|..-.+.+
T Consensus 601 g~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 601 GKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred hhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeee
Confidence 9999999999999999999999999999999999996655544
No 236
>PRK02362 ski2-like helicase; Provisional
Probab=86.71 E-value=19 Score=41.07 Aligned_cols=74 Identities=18% Similarity=0.254 Sum_probs=51.2
Q ss_pred HHHHhccCCcEEEEcCChhhHHHHHHHHhc----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechh-----hhcc-
Q 011052 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AARG- 150 (494)
Q Consensus 81 ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~-----~~~G- 150 (494)
++....++.++|+.+|+++.|.+.++.+++ ++.+..++|+...... .+ +..+|+|||+. ...+
T Consensus 60 il~~l~~~~kal~i~P~raLa~q~~~~~~~~~~~g~~v~~~tGd~~~~~~-----~l--~~~~IiV~Tpek~~~llr~~~ 132 (737)
T PRK02362 60 MLKAIARGGKALYIVPLRALASEKFEEFERFEELGVRVGISTGDYDSRDE-----WL--GDNDIIVATSEKVDSLLRNGA 132 (737)
T ss_pred HHHHHhcCCcEEEEeChHHHHHHHHHHHHHhhcCCCEEEEEeCCcCcccc-----cc--CCCCEEEECHHHHHHHHhcCh
Confidence 344444678999999999999999998874 4678889998765431 11 34689999972 2222
Q ss_pred CCCCcccEEEe
Q 011052 151 LDIPNVDLIIH 161 (494)
Q Consensus 151 iDip~v~~VI~ 161 (494)
..+.++.+||.
T Consensus 133 ~~l~~v~lvVi 143 (737)
T PRK02362 133 PWLDDITCVVV 143 (737)
T ss_pred hhhhhcCEEEE
Confidence 23467787773
No 237
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=85.94 E-value=2.6 Score=49.23 Aligned_cols=88 Identities=17% Similarity=0.286 Sum_probs=70.5
Q ss_pred cHHHHH-HHHHHHhccCCcEEEEcCChhhHHHHHHHHhcc-----CceeeecCCCCHHHHHHHHccccCCCeeEEEech-
Q 011052 73 SKRTIL-SDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-----IASEALHGDISQHQRERTLNGFRQGKFTVLVATD- 145 (494)
Q Consensus 73 ~k~~~L-~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~~-----~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~- 145 (494)
-|.++. ....+....++++.|.|||.=.|++=++-+++. +.+..|..=.+.+++..+++..++|+++|+|.|-
T Consensus 627 GKTEVAmRAAFkAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHr 706 (1139)
T COG1197 627 GKTEVAMRAAFKAVMDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHR 706 (1139)
T ss_pred cHHHHHHHHHHHHhcCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechH
Confidence 454443 334444556789999999999999998888852 4577888888999999999999999999999995
Q ss_pred hhhccCCCCcccEEE
Q 011052 146 VAARGLDIPNVDLII 160 (494)
Q Consensus 146 ~~~~GiDip~v~~VI 160 (494)
++...|-+.++-+||
T Consensus 707 LL~kdv~FkdLGLlI 721 (1139)
T COG1197 707 LLSKDVKFKDLGLLI 721 (1139)
T ss_pred hhCCCcEEecCCeEE
Confidence 677778888887766
No 238
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=84.46 E-value=6.3 Score=41.44 Aligned_cols=63 Identities=8% Similarity=0.011 Sum_probs=31.9
Q ss_pred ccchhHHHHHhhhhcCcCccccccEEEee---cCCcceeEEec-CHHHHHHHHhhc--CCCCCceEeeccCCC
Q 011052 301 FMSARSVMGFLSDVYPTAADEIGKIHIIA---DDRVQGAVFDL-PEEIAKELLNKQ--IPPGNTISKITKLPA 367 (494)
Q Consensus 301 ~~~~~~i~~~i~~~~~~~~~~ig~i~~~~---~~~~~gs~~d~-~~~~~~~~~~~~--~~~~~~l~v~~~LP~ 367 (494)
..++.+|..++...+++...-|-....-. .| .|++. +...++..++.. ...+..+.|-++.+.
T Consensus 299 da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~f----gFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 299 DATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCF----GFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred CCCHHHHHHHHhhcccccccceEEeccCCCcCce----EEEEEeecchhhhhhhcCccccCCeeEEEEecccc
Confidence 35678888888888877664332222111 22 24433 334445555432 224555655555543
No 239
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=84.37 E-value=6.8 Score=38.11 Aligned_cols=87 Identities=15% Similarity=0.215 Sum_probs=65.2
Q ss_pred cCceeeecCCCCHHHHHHHHccccCCC----eeEEEechhhhccCCCCcccEEEecCCCCChhhHHHHhcccC-CCCCCc
Q 011052 111 IIASEALHGDISQHQRERTLNGFRQGK----FTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG-RAGKEG 185 (494)
Q Consensus 111 ~~~~~~lhg~~~~~~R~~~l~~Fr~g~----~~iLVaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~g-R~G~~g 185 (494)
++.+..++++.+... -.|.++. ..|+|.=+.++||+.++++.+.+...-+...+++.||.=--| |.|-..
T Consensus 110 ~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRwFGYR~gY~d 184 (239)
T PF10593_consen 110 GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRWFGYRPGYED 184 (239)
T ss_pred CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhcccCCccccc
Confidence 378888887755433 3444443 889999999999999999998888888999999999863344 556667
Q ss_pred eEEEecChhhHHHHHHH
Q 011052 186 TAILMFTSSQRRTVRSL 202 (494)
Q Consensus 186 ~~i~l~~~~e~~~l~~l 202 (494)
.|-++.++.-......+
T Consensus 185 l~Ri~~~~~l~~~f~~i 201 (239)
T PF10593_consen 185 LCRIYMPEELYDWFRHI 201 (239)
T ss_pred ceEEecCHHHHHHHHHH
Confidence 78888877655555554
No 240
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=83.81 E-value=10 Score=44.16 Aligned_cols=57 Identities=19% Similarity=0.162 Sum_probs=47.7
Q ss_pred CcEEEEcCChhhHHHHHHHH-hccCceeeecCCCCHHHHHHHHccccCC--CeeEEEech
Q 011052 89 GKTIVFTQTKRDADEVSLAL-TSIIASEALHGDISQHQRERTLNGFRQG--KFTVLVATD 145 (494)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L-~~~~~~~~lhg~~~~~~R~~~l~~Fr~g--~~~iLVaT~ 145 (494)
+-+||..|-....+.....| ...+++..||++++..+|..+++.+.++ .++||--|+
T Consensus 305 gitvVISPL~SLm~DQv~~L~~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtP 364 (941)
T KOG0351|consen 305 GVTVVISPLISLMQDQVTHLSKKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTP 364 (941)
T ss_pred CceEEeccHHHHHHHHHHhhhhcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCH
Confidence 34566777777777666666 4589999999999999999999999999 899998888
No 241
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=83.69 E-value=2.3 Score=48.60 Aligned_cols=53 Identities=17% Similarity=0.219 Sum_probs=40.9
Q ss_pred CcEEEEc-CChhhHHHHHHHHhc----------------------------cCceeeecCCCCHHHHHHHHccccCCCee
Q 011052 89 GKTIVFT-QTKRDADEVSLALTS----------------------------IIASEALHGDISQHQRERTLNGFRQGKFT 139 (494)
Q Consensus 89 ~~~IVF~-~t~~~~~~l~~~L~~----------------------------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~ 139 (494)
.+.|||| +|++.|+++++.+.+ .+.+..++|+.+.+.+...+.. ...
T Consensus 62 ~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~----~p~ 137 (844)
T TIGR02621 62 PRRLVYVVNRRTVVDQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPH----RPA 137 (844)
T ss_pred cceEEEeCchHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCC----CCc
Confidence 4677766 999999998887752 1557888999988777666654 678
Q ss_pred EEEech
Q 011052 140 VLVATD 145 (494)
Q Consensus 140 iLVaT~ 145 (494)
|||+|.
T Consensus 138 IIVgT~ 143 (844)
T TIGR02621 138 VIVGTV 143 (844)
T ss_pred EEEECH
Confidence 999993
No 242
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=82.56 E-value=2.7 Score=44.57 Aligned_cols=72 Identities=18% Similarity=0.237 Sum_probs=53.1
Q ss_pred CcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHH-HHHHHHccccCCCeeEEEech-------hhhccCCCCc
Q 011052 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQH-QRERTLNGFRQGKFTVLVATD-------VAARGLDIPN 155 (494)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~-~R~~~l~~Fr~g~~~iLVaT~-------~~~~GiDip~ 155 (494)
-+|||.+||++.+.+++..+.. ++.|+.+.|.-+-+ +..+....-..-.++|||||+ -.-.++|+..
T Consensus 216 LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~ 295 (620)
T KOG0350|consen 216 LRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKH 295 (620)
T ss_pred eEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhh
Confidence 4899999999999999999874 46677777765544 333344444555789999998 2367888888
Q ss_pred ccEEE
Q 011052 156 VDLII 160 (494)
Q Consensus 156 v~~VI 160 (494)
+++.|
T Consensus 296 LrfLV 300 (620)
T KOG0350|consen 296 LRFLV 300 (620)
T ss_pred ceEEE
Confidence 88766
No 243
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=82.26 E-value=2 Score=47.95 Aligned_cols=54 Identities=24% Similarity=0.398 Sum_probs=45.9
Q ss_pred HccccCCCeeEEEechhhhccCCCCcccE--------EEecCCCCChhhHHHHhcccCCCCC
Q 011052 130 LNGFRQGKFTVLVATDVAARGLDIPNVDL--------IIHYELPNDPETFVHRSGRTGRAGK 183 (494)
Q Consensus 130 l~~Fr~g~~~iLVaT~~~~~GiDip~v~~--------VI~~~~P~~~~~y~qr~GR~gR~G~ 183 (494)
-++|.+|+..|-|-+.+++-||-+..-+. -|-..+||+.+.-||..|||.|..+
T Consensus 850 KqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQ 911 (1300)
T KOG1513|consen 850 KQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQ 911 (1300)
T ss_pred HhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccc
Confidence 35799999999999999999999865443 4457899999999999999999873
No 244
>PHA02653 RNA helicase NPH-II; Provisional
Probab=80.24 E-value=3.6 Score=46.19 Aligned_cols=68 Identities=9% Similarity=-0.017 Sum_probs=45.0
Q ss_pred CCcEEEEcCChhhHHHHHHHHhc--------cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEE
Q 011052 88 GGKTIVFTQTKRDADEVSLALTS--------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~--------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~V 159 (494)
..+++|-+||++.|.+++..+.+ +..+...+|+++..+... ..+ ...+||+|.-.. -.++.++.+|
T Consensus 222 ~~~ilvt~PrreLa~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~~~~~t---~~k--~~~Ilv~T~~L~-l~~L~~v~~V 295 (675)
T PHA02653 222 ERPIVLSLPRVALVRLHSITLLKSLGFDEIDGSPISLKYGSIPDELINT---NPK--PYGLVFSTHKLT-LNKLFDYGTV 295 (675)
T ss_pred CcEEEEECcHHHHHHHHHHHHHHHhCccccCCceEEEEECCcchHHhhc---ccC--CCCEEEEeCccc-ccccccCCEE
Confidence 35899999999999998888763 234677899988422221 111 457999995320 1146678887
Q ss_pred Ee
Q 011052 160 IH 161 (494)
Q Consensus 160 I~ 161 (494)
|.
T Consensus 296 VI 297 (675)
T PHA02653 296 II 297 (675)
T ss_pred Ec
Confidence 73
No 245
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=79.87 E-value=3.3 Score=37.31 Aligned_cols=46 Identities=37% Similarity=0.636 Sum_probs=39.2
Q ss_pred ChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEe
Q 011052 5 GFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDL 50 (494)
Q Consensus 5 GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~ 50 (494)
.+.+.+..++..+++..+++++|||+++.+...+..++.+...+..
T Consensus 145 ~~~~~~~~~~~~~~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~ 190 (201)
T smart00487 145 GFGDQLEKLLKLLPKNVQLLLLSATPPEEIENLLELFLNDPVFIDV 190 (201)
T ss_pred CcHHHHHHHHHhCCccceEEEEecCCchhHHHHHHHhcCCCEEEeC
Confidence 5678888999989889999999999999999999888886666654
No 246
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=79.61 E-value=0.58 Score=50.70 Aligned_cols=10 Identities=20% Similarity=0.215 Sum_probs=4.5
Q ss_pred HHHHHHHHHh
Q 011052 197 RTVRSLERDV 206 (494)
Q Consensus 197 ~~l~~le~~~ 206 (494)
+.+..+...+
T Consensus 264 kfv~y~~~kv 273 (556)
T PF05918_consen 264 KFVNYMCEKV 273 (556)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 3444444443
No 247
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=79.14 E-value=7.5 Score=43.84 Aligned_cols=61 Identities=11% Similarity=0.090 Sum_probs=48.8
Q ss_pred HHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechh
Q 011052 79 SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (494)
Q Consensus 79 ~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~ 146 (494)
..++... .+.+++|.|+|...|.+.++.+.. ++.+.++.|+++..+|...++ ++|+++|+.
T Consensus 89 pa~l~aL-~G~~V~VvTpt~~LA~qdae~~~~l~~~LGLsv~~i~g~~~~~~r~~~y~------~dIvyGT~~ 154 (745)
T TIGR00963 89 PAYLNAL-TGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREAYA------CDITYGTNN 154 (745)
T ss_pred HHHHHHH-hCCCEEEEcCCHHHHHHHHHHHHHHhccCCCeEEEEeCCCCHHHHHHhcC------CCEEEECCC
Confidence 3334444 457899999999999999998874 478899999999988877664 689999985
No 248
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=77.84 E-value=7.3 Score=43.43 Aligned_cols=54 Identities=15% Similarity=0.078 Sum_probs=44.8
Q ss_pred ccCCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEech
Q 011052 86 AKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (494)
Q Consensus 86 ~~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~ 145 (494)
..+.+++|.++|+..|.+.++.+.. ++.+.++.|++++.+|.... .++|+++|+
T Consensus 142 l~G~~v~VvTptreLA~qdae~~~~l~~~lGlsv~~i~gg~~~~~r~~~y------~~dIvygT~ 200 (656)
T PRK12898 142 LAGLPVHVITVNDYLAERDAELMRPLYEALGLTVGCVVEDQSPDERRAAY------GADITYCTN 200 (656)
T ss_pred hcCCeEEEEcCcHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCHHHHHHHc------CCCEEEECC
Confidence 3567999999999999999998874 47899999999987776554 468999997
No 249
>COG4371 Predicted membrane protein [Function unknown]
Probab=76.35 E-value=5.6 Score=38.31 Aligned_cols=10 Identities=10% Similarity=0.185 Sum_probs=4.5
Q ss_pred ecCHHHHHHH
Q 011052 339 DLPEEIAKEL 348 (494)
Q Consensus 339 d~~~~~~~~~ 348 (494)
..|++...+.
T Consensus 9 ~~Pk~~~~r~ 18 (334)
T COG4371 9 SSPKRARSRA 18 (334)
T ss_pred cCcHHHHHHH
Confidence 3455544443
No 250
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=74.56 E-value=9.6 Score=43.84 Aligned_cols=62 Identities=15% Similarity=0.171 Sum_probs=48.9
Q ss_pred HHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechh
Q 011052 78 LSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (494)
Q Consensus 78 L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~ 146 (494)
|..++... .+..++|.++|+..|.+.++.+.. ++.+.+++|+++..+|...+ .++|+++|+-
T Consensus 114 Lpa~~~al-~G~~V~VvTpn~yLA~qd~e~m~~l~~~lGLtv~~i~gg~~~~~r~~~y------~~dIvygT~g 180 (896)
T PRK13104 114 LPAYLNAI-SGRGVHIVTVNDYLAKRDSQWMKPIYEFLGLTVGVIYPDMSHKEKQEAY------KADIVYGTNN 180 (896)
T ss_pred HHHHHHHh-cCCCEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCHHHHHHHh------CCCEEEECCh
Confidence 33344443 456899999999999999998874 46889999999999887766 4689999983
No 251
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=73.90 E-value=10 Score=43.81 Aligned_cols=52 Identities=15% Similarity=0.082 Sum_probs=43.4
Q ss_pred CCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEech
Q 011052 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~ 145 (494)
+..++|.++|++.|.++++.+.. ++.+.++.|+++..++...+ .++|+|+|+
T Consensus 135 g~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y------~~DIVygTP 191 (970)
T PRK12899 135 GKPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY------QCDVVYGTA 191 (970)
T ss_pred cCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECC
Confidence 35689999999999999998873 46788999999999887554 378999998
No 252
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=71.25 E-value=20 Score=29.87 Aligned_cols=71 Identities=30% Similarity=0.340 Sum_probs=47.0
Q ss_pred ccHHHHHHHHHHHhc---cCCcEEEEcCChhhHHHHHHHHhcc----CceeeecCCCCHHHHHHHHccccCCCeeEEEec
Q 011052 72 TSKRTILSDLITVYA---KGGKTIVFTQTKRDADEVSLALTSI----IASEALHGDISQHQRERTLNGFRQGKFTVLVAT 144 (494)
Q Consensus 72 ~~k~~~L~~ll~~~~---~~~~~IVF~~t~~~~~~l~~~L~~~----~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT 144 (494)
.-|-..+..++.... ...++||+|+++..+++..+.+... ..+..+|+.....++.... .....|+++|
T Consensus 11 ~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~i~t 86 (144)
T cd00046 11 SGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQEKLL----SGKTDIVVGT 86 (144)
T ss_pred CchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHHHHh----cCCCCEEEEC
Confidence 345444433333332 4579999999999999998888752 5577888876666555222 2367788888
Q ss_pred hh
Q 011052 145 DV 146 (494)
Q Consensus 145 ~~ 146 (494)
..
T Consensus 87 ~~ 88 (144)
T cd00046 87 PG 88 (144)
T ss_pred cH
Confidence 75
No 253
>PRK00254 ski2-like helicase; Provisional
Probab=70.96 E-value=9.9 Score=43.16 Aligned_cols=67 Identities=25% Similarity=0.381 Sum_probs=48.6
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhc----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechh-----hhcc-CCCCcc
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AARG-LDIPNV 156 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~-----~~~G-iDip~v 156 (494)
.+.++|+.+|+++.|.+.++.+.. ++.+..+||+.+...+ .+ +..+|+|+|+. ...+ ..+.++
T Consensus 67 ~~~~~l~l~P~~aLa~q~~~~~~~~~~~g~~v~~~~Gd~~~~~~--~~-----~~~~IiV~Tpe~~~~ll~~~~~~l~~l 139 (720)
T PRK00254 67 EGGKAVYLVPLKALAEEKYREFKDWEKLGLRVAMTTGDYDSTDE--WL-----GKYDIIIATAEKFDSLLRHGSSWIKDV 139 (720)
T ss_pred cCCeEEEEeChHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCchh--hh-----ccCCEEEEcHHHHHHHHhCCchhhhcC
Confidence 467999999999999999988763 5788899999875432 11 35789999962 2111 335678
Q ss_pred cEEE
Q 011052 157 DLII 160 (494)
Q Consensus 157 ~~VI 160 (494)
.+||
T Consensus 140 ~lvV 143 (720)
T PRK00254 140 KLVV 143 (720)
T ss_pred CEEE
Confidence 8777
No 254
>smart00493 TOPRIM topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins.
Probab=66.78 E-value=12 Score=28.82 Aligned_cols=59 Identities=20% Similarity=0.162 Sum_probs=40.7
Q ss_pred EEEEcCChhhHHHHHHHHhccCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhcc
Q 011052 91 TIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 150 (494)
Q Consensus 91 ~IVF~~t~~~~~~l~~~L~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~G 150 (494)
.|+.|....++..+.+.......+.++.|.....+....+.++... ..|+||+|--..|
T Consensus 2 ~l~ivEg~~da~~~~~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~-~~Iii~~D~D~~G 60 (76)
T smart00493 2 VLIIVEGPADAIALEKAGGFGGNVVALGGHLLKKEIIKLLKRLAKK-KEVILATDPDREG 60 (76)
T ss_pred EEEEEcCHHHHHHHHHhcCCCEEEEEEeeeecHHHHHHHHHHHhcC-CEEEEEcCCChhH
Confidence 5888999888888888776545566666666555566666665443 5799999854433
No 255
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=66.16 E-value=14 Score=29.38 Aligned_cols=41 Identities=17% Similarity=0.157 Sum_probs=31.5
Q ss_pred HHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCC
Q 011052 82 ITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDIS 122 (494)
Q Consensus 82 l~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~ 122 (494)
+..+.++.++++||.+-..+...+..|+. ++.+..+.|++.
T Consensus 45 ~~~~~~~~~vvl~c~~g~~a~~~a~~L~~~G~~v~~l~GG~~ 86 (90)
T cd01524 45 LNELPKDKEIIVYCAVGLRGYIAARILTQNGFKVKNLDGGYK 86 (90)
T ss_pred HHhcCCCCcEEEEcCCChhHHHHHHHHHHCCCCEEEecCCHH
Confidence 33445667999999987778888888875 568888999874
No 256
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=66.10 E-value=19 Score=41.19 Aligned_cols=60 Identities=10% Similarity=0.103 Sum_probs=47.0
Q ss_pred HHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCC-HHHHHHHHccccCCCeeEEEech
Q 011052 79 SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDIS-QHQRERTLNGFRQGKFTVLVATD 145 (494)
Q Consensus 79 ~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~-~~~R~~~l~~Fr~g~~~iLVaT~ 145 (494)
..++... .+..++|.++|+..|.+.++.+.. ++.+.++.|+++ ..+|..+. .++|+++|+
T Consensus 111 p~~l~al-~G~~v~VvTpt~~LA~qd~e~~~~l~~~lGl~v~~i~g~~~~~~~r~~~y------~~dIvygT~ 176 (790)
T PRK09200 111 PLYLNAL-EGKGVHLITVNDYLAKRDAEEMGQVYEFLGLTVGLNFSDIDDASEKKAIY------EADIIYTTN 176 (790)
T ss_pred HHHHHHH-cCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCcHHHHHHhc------CCCEEEECC
Confidence 3333443 578999999999999999888763 578999999999 77777553 378999995
No 257
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=65.69 E-value=22 Score=40.92 Aligned_cols=81 Identities=22% Similarity=0.181 Sum_probs=47.4
Q ss_pred cHHHHHH-HHHHHhccCCcEEEEcCChhhHHHHHHHHhcc------CceeeecCCCCHHHHHHHHccccCCCeeEEEech
Q 011052 73 SKRTILS-DLITVYAKGGKTIVFTQTKRDADEVSLALTSI------IASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (494)
Q Consensus 73 ~k~~~L~-~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~~------~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~ 145 (494)
-|...+. .+++......++||.+||+..|.++++.+.+. ..+....+.-+ ..+...+|+|+|+
T Consensus 32 GKTt~~pl~lL~~~~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~~----------~~~~~t~I~v~T~ 101 (812)
T PRK11664 32 GKSTWLPLQLLQHGGINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAES----------KVGPNTRLEVVTE 101 (812)
T ss_pred CHHHHHHHHHHHcCCcCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCcc----------ccCCCCcEEEECh
Confidence 4444333 23333223468999999999999999988532 12222222111 1112457899997
Q ss_pred -----hhhccCCCCcccEEEecC
Q 011052 146 -----VAARGLDIPNVDLIIHYE 163 (494)
Q Consensus 146 -----~~~~GiDip~v~~VI~~~ 163 (494)
.+....++.++.+||.-+
T Consensus 102 G~Llr~l~~d~~L~~v~~IIlDE 124 (812)
T PRK11664 102 GILTRMIQRDPELSGVGLVILDE 124 (812)
T ss_pred hHHHHHHhhCCCcCcCcEEEEcC
Confidence 333455678888888533
No 258
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=63.57 E-value=34 Score=33.48 Aligned_cols=40 Identities=18% Similarity=0.305 Sum_probs=34.2
Q ss_pred ccHHHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhcc
Q 011052 72 TSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI 111 (494)
Q Consensus 72 ~~k~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~~ 111 (494)
.+-.+.|.++.+.+.+++.+++||||.++++.+.+.|++.
T Consensus 172 p~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~ 211 (256)
T COG2519 172 PDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRER 211 (256)
T ss_pred CChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhc
Confidence 3556778888888888899999999999999999999863
No 259
>PRK01172 ski2-like helicase; Provisional
Probab=63.55 E-value=14 Score=41.53 Aligned_cols=72 Identities=19% Similarity=0.215 Sum_probs=48.8
Q ss_pred HHHhccCCcEEEEcCChhhHHHHHHHHhc----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechh-----hhcc-C
Q 011052 82 ITVYAKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AARG-L 151 (494)
Q Consensus 82 l~~~~~~~~~IVF~~t~~~~~~l~~~L~~----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~-----~~~G-i 151 (494)
++....+.++|+.+|+++.|.+.++.+++ ++.+..++|+...... .+ ...+|+|+|+- ..+. .
T Consensus 59 l~~l~~~~k~v~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~--~~-----~~~dIiv~Tpek~~~l~~~~~~ 131 (674)
T PRK01172 59 YETFLAGLKSIYIVPLRSLAMEKYEELSRLRSLGMRVKISIGDYDDPPD--FI-----KRYDVVILTSEKADSLIHHDPY 131 (674)
T ss_pred HHHHHhCCcEEEEechHHHHHHHHHHHHHHhhcCCeEEEEeCCCCCChh--hh-----ccCCEEEECHHHHHHHHhCChh
Confidence 34344467999999999999999988874 4667778888764322 11 24689999982 2222 2
Q ss_pred CCCcccEEE
Q 011052 152 DIPNVDLII 160 (494)
Q Consensus 152 Dip~v~~VI 160 (494)
.+.++.+||
T Consensus 132 ~l~~v~lvV 140 (674)
T PRK01172 132 IINDVGLIV 140 (674)
T ss_pred HHhhcCEEE
Confidence 356777777
No 260
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=62.23 E-value=13 Score=30.21 Aligned_cols=42 Identities=12% Similarity=0.153 Sum_probs=32.5
Q ss_pred HHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCC
Q 011052 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDIS 122 (494)
Q Consensus 81 ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~ 122 (494)
.+..+.++.+++|+|.+-..+...+..|.+ ++.+..|.|++.
T Consensus 54 ~~~~~~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 96 (100)
T cd01523 54 ILDQLPDDQEVTVICAKEGSSQFVAELLAERGYDVDYLAGGMK 96 (100)
T ss_pred HHhhCCCCCeEEEEcCCCCcHHHHHHHHHHcCceeEEeCCcHH
Confidence 344445678999999987788888888875 777888888874
No 261
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=62.03 E-value=2e+02 Score=29.66 Aligned_cols=59 Identities=15% Similarity=0.074 Sum_probs=33.5
Q ss_pred eEEEEecCCccccCccchhHHHHHhhhhcCcCccccccEEEeecCC----cceeEEec-CHHHHHHHHhhcCC
Q 011052 287 VTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDR----VQGAVFDL-PEEIAKELLNKQIP 354 (494)
Q Consensus 287 ~t~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~ig~i~~~~~~~----~~gs~~d~-~~~~~~~~~~~~~~ 354 (494)
++|+|..- ...++..+|..++...+. |-.+.+..+.. .-.+||+. ..+.|+++|+.+..
T Consensus 194 ~~lfV~nL----p~~vtee~L~~~F~~fG~-----V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng 257 (346)
T TIGR01659 194 TNLYVTNL----PRTITDDQLDTIFGKYGQ-----IVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNN 257 (346)
T ss_pred ceeEEeCC----CCcccHHHHHHHHHhcCC-----EEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 45666421 234677888888876554 33444443310 11267777 45777888876554
No 262
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=61.12 E-value=46 Score=38.61 Aligned_cols=101 Identities=14% Similarity=0.192 Sum_probs=64.4
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhc-------cCceeeecCCCCHHHHHHHHccccCCCeeEEEech-hhhc----cCC--
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTS-------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-VAAR----GLD-- 152 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~-~~~~----GiD-- 152 (494)
+..++|++-||+..|..=.+.|.+ .+.+..++|+.++.+|+.++.. ..+||++|+ ++.. ..|
T Consensus 114 ~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~----pp~IllTNpdMLh~~llr~~~~~ 189 (851)
T COG1205 114 PSARALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRN----PPDILLTNPDMLHYLLLRNHDAW 189 (851)
T ss_pred cCccEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhC----CCCEEEeCHHHHHHHhccCcchH
Confidence 345789999999888765555542 2678899999999999866666 889999986 3222 111
Q ss_pred ---CCcccEEEe-----cC--CCCChhhHHHHhcccCCCCCCceEEEec
Q 011052 153 ---IPNVDLIIH-----YE--LPNDPETFVHRSGRTGRAGKEGTAILMF 191 (494)
Q Consensus 153 ---ip~v~~VI~-----~~--~P~~~~~y~qr~GR~gR~G~~g~~i~l~ 191 (494)
..++.+||- |. +=.++.-.+-|.-|..|.......+++.
T Consensus 190 ~~~~~~Lk~lVvDElHtYrGv~GS~vA~llRRL~~~~~~~~~~~q~i~~ 238 (851)
T COG1205 190 LWLLRNLKYLVVDELHTYRGVQGSEVALLLRRLLRRLRRYGSPLQIICT 238 (851)
T ss_pred HHHHhcCcEEEEecceeccccchhHHHHHHHHHHHHHhccCCCceEEEE
Confidence 134566663 22 2235566666776665544344444443
No 263
>KOG1257 consensus NADP+-dependent malic enzyme [Energy production and conversion]
Probab=60.80 E-value=2.5e+02 Score=30.51 Aligned_cols=216 Identities=18% Similarity=0.156 Sum_probs=109.5
Q ss_pred EEEEcCChhhHHHHHHHHhc---cCceeeecCCCCHHHHHHHHccccCCCeeEEEech---hhhccCCCCcccEEEecCC
Q 011052 91 TIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD---VAARGLDIPNVDLIIHYEL 164 (494)
Q Consensus 91 ~IVF~~t~~~~~~l~~~L~~---~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~---~~~~GiDip~v~~VI~~~~ 164 (494)
-|||+||.-.|-+.+..+-+ ++.+...+- ..-..++..|....++.+|.|| ++.-| |+ . |--+++
T Consensus 115 PIvYTPTvG~acq~y~~i~r~p~Glfisi~D~----Ghi~~~l~nWp~~~V~~IvVTDGerILGLG-Dl-G---~~GmgI 185 (582)
T KOG1257|consen 115 PIVYTPTVGLACQQYGLIFRRPQGLFISIKDK----GHIKQVLKNWPERNVKAIVVTDGERILGLG-DL-G---VNGMGI 185 (582)
T ss_pred CeeecCcHHHHHHHhhhhhccCceeEEEeccc----chHHHHHHhCCccceeEEEEeCCCceeccc-cc-c---cCcccc
Confidence 39999999988888777754 333322222 3556788888888999999998 22211 11 0 001222
Q ss_pred CCC-hhhHHHHhcccCCCCCCceEEEecC--hhhHHHHHHHHHHhCCCceecCCCCHHHHHHHHHHHHHHHHccCCccch
Q 011052 165 PND-PETFVHRSGRTGRAGKEGTAILMFT--SSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESV 241 (494)
Q Consensus 165 P~~-~~~y~qr~GR~gR~G~~g~~i~l~~--~~e~~~l~~le~~~~~~~~~~~~p~~~~i~~~~~~~~~~~l~~~~~~~~ 241 (494)
|-. ...|.-..|= ++..|.-++- -++.+.+..=.-+++....++.-+...+.++.+++.+...--...--+.
T Consensus 186 pvgKL~Lyta~~GI-----~P~~cLPV~LDVGTNNe~Ll~DplYiGLr~~R~~g~eYd~~~dEFm~Av~~~yG~~~lIqF 260 (582)
T KOG1257|consen 186 PVGKLALYTALGGI-----RPSRCLPVCLDVGTNNEKLLNDPLYIGLRQRRVRGKEYDEFLDEFMEAVVQRYGPNTLIQF 260 (582)
T ss_pred eecHHHHHHHhcCC-----ChhhceeEEEeccCChHHHhcCccccccccccccccHHHHHHHHHHHHHHHHhCcceEEEe
Confidence 322 2333333322 3444443322 1223333333456677777777777777777777777666522111111
Q ss_pred hhh-hHHHHHHHhhcC--------------HHHHHHHHHHHcCCCCCCCCcccccCCCCceEEEEecCCccccCccchhH
Q 011052 242 EFF-TPTAQRLIEEKG--------------TDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARS 306 (494)
Q Consensus 242 ~~f-~~~a~~l~~~~~--------------~~~l~aal~~~~g~~~~~~~rsl~~~~~~~~t~~~~~~~~~~~~~~~~~~ 306 (494)
+.| ...|.++++... .-++|..++.+.-...+ | ...+-+++..+. +.-++. .-
T Consensus 261 EDF~~~nAfrlL~kYr~~~c~FNDDIQGTaaValAgllaa~rit~~~-----l----sd~~ilf~GAG~--A~~GIA-~l 328 (582)
T KOG1257|consen 261 EDFANHNAFRLLEKYRNKYCMFNDDIQGTAAVALAGLLAALRITGKP-----L----SDHVILFLGAGE--AALGIA-NL 328 (582)
T ss_pred hhccchhHHHHHHHhccccceecccccchhHHHHHHHHHHHHHhCCc-----c----ccceEEEecCch--HHhhHH-HH
Confidence 222 233666666532 12333333333311111 1 124445555554 333332 23
Q ss_pred HHHHhhhhcCcCccccccEEEeecCC
Q 011052 307 VMGFLSDVYPTAADEIGKIHIIADDR 332 (494)
Q Consensus 307 i~~~i~~~~~~~~~~ig~i~~~~~~~ 332 (494)
++-.+.+.+-...+..++|-+.|..+
T Consensus 329 ~v~~m~~~Gl~~eeA~kkIwlvD~~G 354 (582)
T KOG1257|consen 329 IVMAMVKEGLSEEEARKKIWLVDSKG 354 (582)
T ss_pred HHHHHHHcCCCHHHHhccEEEEecCc
Confidence 33334444433445578999988864
No 264
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=60.75 E-value=1.1e+02 Score=27.15 Aligned_cols=85 Identities=24% Similarity=0.375 Sum_probs=48.7
Q ss_pred ccHHHHH-HHHHHHhcc--CCcEEEEcCChhhHHHHHHHHhcc------CceeeecCCCCHHHHHHHHccccCCCeeEEE
Q 011052 72 TSKRTIL-SDLITVYAK--GGKTIVFTQTKRDADEVSLALTSI------IASEALHGDISQHQRERTLNGFRQGKFTVLV 142 (494)
Q Consensus 72 ~~k~~~L-~~ll~~~~~--~~~~IVF~~t~~~~~~l~~~L~~~------~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLV 142 (494)
..|...+ ..++..+.. ..++||.+++...+.++...+... .....+++..... .++.+.++...+++
T Consensus 35 sGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~v~~ 110 (201)
T smart00487 35 SGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSKRE----QLRKLESGKTDILV 110 (201)
T ss_pred CchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCeEEEEEeCCcchHH----HHHHHhcCCCCEEE
Confidence 3465533 333333333 368999999999999888887742 2344555544322 23334444558999
Q ss_pred ech-----hhhcc-CCCCcccEEE
Q 011052 143 ATD-----VAARG-LDIPNVDLII 160 (494)
Q Consensus 143 aT~-----~~~~G-iDip~v~~VI 160 (494)
+|. ..... ++...+.++|
T Consensus 111 ~t~~~l~~~~~~~~~~~~~~~~iI 134 (201)
T smart00487 111 TTPGRLLDLLENDLLELSNVDLVI 134 (201)
T ss_pred eChHHHHHHHHcCCcCHhHCCEEE
Confidence 993 33332 3455565555
No 265
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=60.32 E-value=19 Score=41.43 Aligned_cols=67 Identities=18% Similarity=0.190 Sum_probs=41.6
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhccC------ceeeecCCCCHHHHHHHHccccCCCeeEEEech-----hhhccCCCCc
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTSII------ASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARGLDIPN 155 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~~~------~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~-----~~~~GiDip~ 155 (494)
...++||..||+..|.++++.+.+.+ .+...... +...+...+|+|+|+ .+....++.+
T Consensus 44 ~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~----------~~~~s~~t~I~v~T~G~Llr~l~~d~~L~~ 113 (819)
T TIGR01970 44 IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRG----------ENKVSRRTRLEVVTEGILTRMIQDDPELDG 113 (819)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEcc----------ccccCCCCcEEEECCcHHHHHHhhCccccc
Confidence 45699999999999999999886321 11111111 011122467999997 2333456778
Q ss_pred ccEEEecC
Q 011052 156 VDLIIHYE 163 (494)
Q Consensus 156 v~~VI~~~ 163 (494)
+++||.-+
T Consensus 114 v~~VIiDE 121 (819)
T TIGR01970 114 VGALIFDE 121 (819)
T ss_pred CCEEEEec
Confidence 88888533
No 266
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=59.85 E-value=15 Score=37.91 Aligned_cols=22 Identities=14% Similarity=0.160 Sum_probs=18.8
Q ss_pred CcEEEEcCChhhHHHHHHHHhc
Q 011052 89 GKTIVFTQTKRDADEVSLALTS 110 (494)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~ 110 (494)
.++|+.|||++.|.++-+.+.+
T Consensus 161 PQ~iCLaPtrELA~Q~~eVv~e 182 (477)
T KOG0332|consen 161 PQCICLAPTRELAPQTGEVVEE 182 (477)
T ss_pred CCceeeCchHHHHHHHHHHHHH
Confidence 5788889999999998888774
No 267
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=59.75 E-value=23 Score=39.90 Aligned_cols=66 Identities=15% Similarity=0.194 Sum_probs=46.9
Q ss_pred HHHHhccCCcEEEEcCChhhHHHHHHHHh--ccCceeeecCCCCHHHHHHHHccccCC--CeeEEEechhhh
Q 011052 81 LITVYAKGGKTIVFTQTKRDADEVSLALT--SIIASEALHGDISQHQRERTLNGFRQG--KFTVLVATDVAA 148 (494)
Q Consensus 81 ll~~~~~~~~~IVF~~t~~~~~~l~~~L~--~~~~~~~lhg~~~~~~R~~~l~~Fr~g--~~~iLVaT~~~~ 148 (494)
+|.....+++-||.||+--.-..+.+.-+ -.+.+..+||. |.+|.++-..+..+ .++|||+|=-++
T Consensus 441 yLkq~g~~gpHLVVvPsSTleNWlrEf~kwCPsl~Ve~YyGS--q~ER~~lR~~i~~~~~~ydVllTTY~la 510 (941)
T KOG0389|consen 441 YLKQIGNPGPHLVVVPSSTLENWLREFAKWCPSLKVEPYYGS--QDERRELRERIKKNKDDYDVLLTTYNLA 510 (941)
T ss_pred HHHHcCCCCCcEEEecchhHHHHHHHHHHhCCceEEEeccCc--HHHHHHHHHHHhccCCCccEEEEEeecc
Confidence 34444557889999998655444444332 25789999997 78998888888765 789999995433
No 268
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=57.81 E-value=72 Score=35.88 Aligned_cols=107 Identities=17% Similarity=0.207 Sum_probs=71.4
Q ss_pred cCcccHHHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhccCc---eeee--------------------c-----CC
Q 011052 69 TTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIA---SEAL--------------------H-----GD 120 (494)
Q Consensus 69 ~~~~~k~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~---~~~l--------------------h-----g~ 120 (494)
+....|.-++..++... +.++||.++++..|.+++..|+..++ |..+ + ..
T Consensus 37 vtgs~kt~~~a~~~~~~--~~p~Lvi~~n~~~A~ql~~el~~f~p~~~V~~f~sy~d~y~pe~y~P~~d~~~~k~~~~~~ 114 (655)
T TIGR00631 37 VTGSGKTFTMANVIAQV--NRPTLVIAHNKTLAAQLYNEFKEFFPENAVEYFVSYYDYYQPEAYVPSKDTYIEKDASIND 114 (655)
T ss_pred CCCcHHHHHHHHHHHHh--CCCEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeeecccCCccccCCCccccccccCCCCh
Confidence 44456777777777654 46899999999999999999975321 2222 1 11
Q ss_pred CCHHHHHHHHccccCCCeeEEEechhhhccCCCCc----ccEEEecCCCCChhhHHHHhcc
Q 011052 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPN----VDLIIHYELPNDPETFVHRSGR 177 (494)
Q Consensus 121 ~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~----v~~VI~~~~P~~~~~y~qr~GR 177 (494)
--...|..++.+...+.-.|+|||-.+-.++=-|. ..+.+..+-..+.+.++.+.-.
T Consensus 115 ~i~~~R~~al~~L~~~~~~ivVasv~~i~~l~~p~~~~~~~~~l~~G~~i~~~~l~~~Lv~ 175 (655)
T TIGR00631 115 EIERLRHSATRSLLERRDVIVVASVSCIYGLGSPEEYLKMVLHLEVGKEIDRRELLRRLVE 175 (655)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEcHHHhcCCCCHHHHHhccEEEeCCCCcCHHHHHHHHHH
Confidence 12346778888877766678888866666765553 3456666667777777665543
No 269
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=57.56 E-value=14 Score=36.68 Aligned_cols=18 Identities=17% Similarity=0.122 Sum_probs=12.4
Q ss_pred CCChhhHHHHhcccCCCC
Q 011052 165 PNDPETFVHRSGRTGRAG 182 (494)
Q Consensus 165 P~~~~~y~qr~GR~gR~G 182 (494)
+.++|.|..|..+.-..|
T Consensus 76 g~~IE~ya~rlfd~W~lG 93 (271)
T COG1512 76 GETIEQYATRLFDKWKLG 93 (271)
T ss_pred CCCHHHHHHHHHHhcCCC
Confidence 567788888887764444
No 270
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=55.37 E-value=2.1e+02 Score=29.58 Aligned_cols=141 Identities=19% Similarity=0.220 Sum_probs=87.9
Q ss_pred EEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHHHHHHh-ccCCcEEEEcCChhhH
Q 011052 23 SMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVY-AKGGKTIVFTQTKRDA 101 (494)
Q Consensus 23 ~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~-~~~~~~IVF~~t~~~~ 101 (494)
++-++.|+++--+..+...+.. . .....+....+.-..|.+++.+.++.. ..+..+.|-.|..+.|
T Consensus 91 ~L~W~G~Ls~~Q~~as~~l~q~------i-------~~k~~~lv~AV~GaGKTEMif~~i~~al~~G~~vciASPRvDVc 157 (441)
T COG4098 91 VLQWKGTLSPGQKKASNQLVQY------I-------KQKEDTLVWAVTGAGKTEMIFQGIEQALNQGGRVCIASPRVDVC 157 (441)
T ss_pred eeeeccccChhHHHHHHHHHHH------H-------HhcCcEEEEEecCCCchhhhHHHHHHHHhcCCeEEEecCcccch
Confidence 6778888877655554433211 0 011123334455567878777766543 5678999999999999
Q ss_pred HHHHHHHhc---cCceeeecCCCCHHHHHHHHccccCCCeeEEEechh-hhccCCCCcccEEE-e-cC-CCCChhhHHHH
Q 011052 102 DEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-AARGLDIPNVDLII-H-YE-LPNDPETFVHR 174 (494)
Q Consensus 102 ~~l~~~L~~---~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~-~~~GiDip~v~~VI-~-~~-~P~~~~~y~qr 174 (494)
-+++..|+. ...+..|||+-++.. + ..++|||.- +-|=- ...+++| + .| +|.+.+..+|-
T Consensus 158 lEl~~Rlk~aF~~~~I~~Lyg~S~~~f--------r---~plvVaTtHQLlrFk--~aFD~liIDEVDAFP~~~d~~L~~ 224 (441)
T COG4098 158 LELYPRLKQAFSNCDIDLLYGDSDSYF--------R---APLVVATTHQLLRFK--QAFDLLIIDEVDAFPFSDDQSLQY 224 (441)
T ss_pred HHHHHHHHHhhccCCeeeEecCCchhc--------c---ccEEEEehHHHHHHH--hhccEEEEeccccccccCCHHHHH
Confidence 999999996 356889999976643 3 357777752 22221 1234344 2 33 78888888888
Q ss_pred hcccCCCCCCceEEEe
Q 011052 175 SGRTGRAGKEGTAILM 190 (494)
Q Consensus 175 ~GR~gR~G~~g~~i~l 190 (494)
+-+-+|.- .|..|.+
T Consensus 225 Av~~ark~-~g~~Iyl 239 (441)
T COG4098 225 AVKKARKK-EGATIYL 239 (441)
T ss_pred HHHHhhcc-cCceEEE
Confidence 87777743 3333333
No 271
>COG4907 Predicted membrane protein [Function unknown]
Probab=54.83 E-value=10 Score=39.81 Aligned_cols=43 Identities=19% Similarity=0.258 Sum_probs=25.1
Q ss_pred hhHHHHHhhhhcCcCccccccEEEeecCCcceeEEecCHHHHH
Q 011052 304 ARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAK 346 (494)
Q Consensus 304 ~~~i~~~i~~~~~~~~~~ig~i~~~~~~~~~gs~~d~~~~~~~ 346 (494)
+.....++++..-++....-.|.+-++.=+.++-.-|.++.++
T Consensus 488 W~aFKnfLsd~s~lke~~pesI~~W~~ylVYatALGV~dkVvk 530 (595)
T COG4907 488 WQAFKNFLSDYSQLKEAKPESIHLWEQYLVYATALGVSDKVVK 530 (595)
T ss_pred HHHHHHHHHhHHHHhhCCCcceehHhhhhhhhhhhccHHHHHH
Confidence 4455677777666555556778887776443444445444433
No 272
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=53.80 E-value=43 Score=38.46 Aligned_cols=61 Identities=13% Similarity=0.121 Sum_probs=48.6
Q ss_pred HHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEech
Q 011052 78 LSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (494)
Q Consensus 78 L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~ 145 (494)
+..++... .+..+-|.|+|...|.+.++.+.. ++.+.++.++++..+|..+++ ++|+++|+
T Consensus 113 lpa~l~aL-~G~~V~IvTpn~yLA~rd~e~~~~l~~~LGlsv~~i~~~~~~~er~~~y~------~dI~ygT~ 178 (830)
T PRK12904 113 LPAYLNAL-TGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVILSGMSPEERREAYA------ADITYGTN 178 (830)
T ss_pred HHHHHHHH-cCCCEEEEecCHHHHHHHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHhcC------CCeEEECC
Confidence 34444444 456788999999999998888763 578999999999999988864 68999997
No 273
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=53.21 E-value=47 Score=30.83 Aligned_cols=45 Identities=9% Similarity=0.083 Sum_probs=24.8
Q ss_pred cchhHHHHHhhhhcCcCccccccEEEeecCC-cceeEEec-CHHHHHHHHhh
Q 011052 302 MSARSVMGFLSDVYPTAADEIGKIHIIADDR-VQGAVFDL-PEEIAKELLNK 351 (494)
Q Consensus 302 ~~~~~i~~~i~~~~~~~~~~ig~i~~~~~~~-~~gs~~d~-~~~~~~~~~~~ 351 (494)
+..++|.+++.+.++ |-.|.+....+ .-.+||+. ....|+++|.-
T Consensus 18 iRekeieDlFyKyg~-----i~~ieLK~r~g~ppfafVeFEd~RDAeDAiyg 64 (241)
T KOG0105|consen 18 IREKEIEDLFYKYGR-----IREIELKNRPGPPPFAFVEFEDPRDAEDAIYG 64 (241)
T ss_pred hhhccHHHHHhhhcc-----eEEEEeccCCCCCCeeEEEecCccchhhhhhc
Confidence 445677777777665 44555554433 12356655 23456666643
No 274
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=53.18 E-value=3.3e+02 Score=30.80 Aligned_cols=76 Identities=17% Similarity=0.250 Sum_probs=47.6
Q ss_pred CCcEEEEcCChhhHHHHHHHHhc-cC-------ceeeecCCCCHHHHHHHHcccc----CCCeeEEEec--hhhhccCCC
Q 011052 88 GGKTIVFTQTKRDADEVSLALTS-II-------ASEALHGDISQHQRERTLNGFR----QGKFTVLVAT--DVAARGLDI 153 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~-~~-------~~~~lhg~~~~~~R~~~l~~Fr----~g~~~iLVaT--~~~~~GiDi 153 (494)
++-+++|+|+.+-..++.+.+.+ ++ +.+..-..-+ -+.+++.|. .|.-.||.|- --+++|||+
T Consensus 629 PgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF 705 (821)
T KOG1133|consen 629 PGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGKLSEGINF 705 (821)
T ss_pred CCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEecccccccccc
Confidence 47899999999988888888874 21 1122222211 234555553 2343455554 578899999
Q ss_pred Cc--ccEEEecCCCC
Q 011052 154 PN--VDLIIHYELPN 166 (494)
Q Consensus 154 p~--v~~VI~~~~P~ 166 (494)
.+ .+.||..++|.
T Consensus 706 ~D~LgRaVvvVGlPy 720 (821)
T KOG1133|consen 706 SDDLGRAVVVVGLPY 720 (821)
T ss_pred ccccccEEEEeecCC
Confidence 65 56788877774
No 275
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=49.99 E-value=56 Score=38.90 Aligned_cols=99 Identities=20% Similarity=0.282 Sum_probs=69.6
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEecCCC
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELP 165 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~~~~P 165 (494)
...++|||+.-...-+.+...+.- .+... +-++ -+.-...+..|++ --.+|+-+...+-|+|+-+..||+..++-
T Consensus 1220 ~qekvIvfsqws~~ldV~e~~~~~N~I~~~-~~~~--t~d~~dc~~~fk~-I~clll~~~~~~~GLNL~eA~Hvfl~ePi 1295 (1394)
T KOG0298|consen 1220 EQEKVIVFSQWSVVLDVKELRYLMNLIKKQ-LDGE--TEDFDDCIICFKS-IDCLLLFVSKGSKGLNLIEATHVFLVEPI 1295 (1394)
T ss_pred cCceEEEEEehHHHHHHHHHHHHhhhhHhh-hccC--Ccchhhhhhhccc-ceEEEEEeccCcccccHHhhhhhheeccc
Confidence 346899998876666666555542 22221 1221 2233456667776 23356777888999999999999999999
Q ss_pred CChhhHHHHhcccCCCCCCceEEE
Q 011052 166 NDPETFVHRSGRTGRAGKEGTAIL 189 (494)
Q Consensus 166 ~~~~~y~qr~GR~gR~G~~g~~i~ 189 (494)
.++..-.|.+||..|.|++-...+
T Consensus 1296 LN~~~E~QAigRvhRiGQ~~pT~V 1319 (1394)
T KOG0298|consen 1296 LNPGDEAQAIGRVHRIGQKRPTFV 1319 (1394)
T ss_pred cCchHHHhhhhhhhhcccccchhh
Confidence 999999999999999997655443
No 276
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=49.38 E-value=73 Score=31.24 Aligned_cols=69 Identities=19% Similarity=0.276 Sum_probs=46.9
Q ss_pred CcEEEEcCChhhHHHHHHHHhcc----CceeeecCC-CCHHHHHHHHccccCCCeeEEEech-----hhh-ccCCCCccc
Q 011052 89 GKTIVFTQTKRDADEVSLALTSI----IASEALHGD-ISQHQRERTLNGFRQGKFTVLVATD-----VAA-RGLDIPNVD 157 (494)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~~----~~~~~lhg~-~~~~~R~~~l~~Fr~g~~~iLVaT~-----~~~-~GiDip~v~ 157 (494)
..+||+|.+--.|-.|...|+.. ..|+-|-+. +.-+++...++. ..+.|.|+|| +++ -.+.+.++.
T Consensus 127 P~~lvvs~SalRa~dl~R~l~~~~~k~~~v~KLFaKH~Kl~eqv~~L~~---~~~~i~vGTP~Rl~kLle~~~L~l~~l~ 203 (252)
T PF14617_consen 127 PHVLVVSSSALRAADLIRALRSFKGKDCKVAKLFAKHIKLEEQVKLLKK---TRVHIAVGTPGRLSKLLENGALSLSNLK 203 (252)
T ss_pred CEEEEEcchHHHHHHHHHHHHhhccCCchHHHHHHhhccHHHHHHHHHh---CCceEEEeChHHHHHHHHcCCCCcccCe
Confidence 46899999988888888888742 344444433 456666666654 5688999999 333 336667777
Q ss_pred EEE
Q 011052 158 LII 160 (494)
Q Consensus 158 ~VI 160 (494)
+||
T Consensus 204 ~iv 206 (252)
T PF14617_consen 204 RIV 206 (252)
T ss_pred EEE
Confidence 666
No 277
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=49.14 E-value=3.5e+02 Score=30.02 Aligned_cols=70 Identities=16% Similarity=0.170 Sum_probs=41.6
Q ss_pred eEEEEecCCccccCccchhHHHHHhhhhcCcCccccccEEEeecCCcceeEEec-CHHHHHHHHhhcCC---CCCceEee
Q 011052 287 VTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDL-PEEIAKELLNKQIP---PGNTISKI 362 (494)
Q Consensus 287 ~t~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~ig~i~~~~~~~~~gs~~d~-~~~~~~~~~~~~~~---~~~~l~v~ 362 (494)
.+|+|.. . ...++..+|..++....+ -+|-++.+..++ +||+- ..+.|+.+++.++. .+..+.|.
T Consensus 234 k~LfVgN-L---~~~~tee~L~~~F~~f~~---G~I~rV~~~rgf----AFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~ 302 (578)
T TIGR01648 234 KILYVRN-L---MTTTTEEIIEKSFSEFKP---GKVERVKKIRDY----AFVHFEDREDAVKAMDELNGKELEGSEIEVT 302 (578)
T ss_pred cEEEEeC-C---CCCCCHHHHHHHHHhcCC---CceEEEEeecCe----EEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 4566642 2 234678889888886511 134456666666 57777 45677777876554 34455555
Q ss_pred ccCCC
Q 011052 363 TKLPA 367 (494)
Q Consensus 363 ~~LP~ 367 (494)
-.-|+
T Consensus 303 ~Akp~ 307 (578)
T TIGR01648 303 LAKPV 307 (578)
T ss_pred EccCC
Confidence 55554
No 278
>COG1204 Superfamily II helicase [General function prediction only]
Probab=49.05 E-value=30 Score=39.57 Aligned_cols=73 Identities=25% Similarity=0.368 Sum_probs=50.6
Q ss_pred HHHHhcc-CCcEEEEcCChhhHHHHHHHHh---c-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechh----hhcc-
Q 011052 81 LITVYAK-GGKTIVFTQTKRDADEVSLALT---S-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV----AARG- 150 (494)
Q Consensus 81 ll~~~~~-~~~~IVF~~t~~~~~~l~~~L~---~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~----~~~G- 150 (494)
++....+ +.++|-.||++..|++.++.++ . ++++..++|+++.... .+ .+++|+|+|+. +-|-
T Consensus 68 i~~~l~~~~~k~vYivPlkALa~Ek~~~~~~~~~~GirV~~~TgD~~~~~~-~l------~~~~ViVtT~EK~Dsl~R~~ 140 (766)
T COG1204 68 ILSTLLEGGGKVVYIVPLKALAEEKYEEFSRLEELGIRVGISTGDYDLDDE-RL------ARYDVIVTTPEKLDSLTRKR 140 (766)
T ss_pred HHHHHHhcCCcEEEEeChHHHHHHHHHHhhhHHhcCCEEEEecCCcccchh-hh------ccCCEEEEchHHhhHhhhcC
Confidence 3344433 4799999999999999999998 2 6899999999864431 11 26789999972 2222
Q ss_pred CC-CCcccEEE
Q 011052 151 LD-IPNVDLII 160 (494)
Q Consensus 151 iD-ip~v~~VI 160 (494)
.+ +..|++||
T Consensus 141 ~~~~~~V~lvV 151 (766)
T COG1204 141 PSWIEEVDLVV 151 (766)
T ss_pred cchhhcccEEE
Confidence 11 24677766
No 279
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=47.42 E-value=29 Score=36.62 Aligned_cols=13 Identities=31% Similarity=0.360 Sum_probs=7.0
Q ss_pred eEEEechhhhccCC
Q 011052 139 TVLVATDVAARGLD 152 (494)
Q Consensus 139 ~iLVaT~~~~~GiD 152 (494)
...|.+|++ |=||
T Consensus 122 ~yfVlNDiF-Rfvd 134 (419)
T KOG0116|consen 122 GYFVLNDIF-RFVD 134 (419)
T ss_pred ceEEEechh-hhcc
Confidence 456666654 3344
No 280
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=46.62 E-value=53 Score=29.09 Aligned_cols=81 Identities=20% Similarity=0.220 Sum_probs=49.2
Q ss_pred CcccHHHHHHHHHHH-hccCCcEEEEcCChhhHHHHHHHHhcc-CceeeecCCCCHHHHHHHHccccCCCeeEEEe-chh
Q 011052 70 TATSKRTILSDLITV-YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA-TDV 146 (494)
Q Consensus 70 ~~~~k~~~L~~ll~~-~~~~~~~IVF~~t~~~~~~l~~~L~~~-~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVa-T~~ 146 (494)
....+...++.|+.+ +..+.+++|+|++.+.++.|-+.|=.. -...+=|+-.... . .....|+|+ ++.
T Consensus 10 ~~~~~~~~~c~L~~ka~~~g~rv~I~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~--------~-~~~~PV~l~~~~~ 80 (142)
T PRK05728 10 TLSALEALLCELAEKALRAGWRVLVQCEDEEQAEALDEALWTFRDESFLPHGLAGEG--------P-AAGQPVLLTWPGK 80 (142)
T ss_pred CchhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhcCCCCCcCCCCCcCCCC--------C-CCCCCEEEEcCCC
Confidence 445677878887755 466789999999999999998887321 1122223321110 0 114568887 321
Q ss_pred hhccCCCCcccEEEecC
Q 011052 147 AARGLDIPNVDLIIHYE 163 (494)
Q Consensus 147 ~~~GiDip~v~~VI~~~ 163 (494)
.+.+..+++||.+
T Consensus 81 ----~~~~~~~~LinL~ 93 (142)
T PRK05728 81 ----RNANHRDLLINLD 93 (142)
T ss_pred ----CCCCCCcEEEECC
Confidence 2345567788875
No 281
>COG4907 Predicted membrane protein [Function unknown]
Probab=45.88 E-value=18 Score=38.06 Aligned_cols=15 Identities=20% Similarity=0.315 Sum_probs=10.8
Q ss_pred CCCcEEEEeecCChH
Q 011052 19 PKRQSMLFSATMPSW 33 (494)
Q Consensus 19 ~~~q~ll~SATlp~~ 33 (494)
++..+.-++-|+|..
T Consensus 116 ~e~~tf~~vy~~~~a 130 (595)
T COG4907 116 NEVRTFKFVYTLPEA 130 (595)
T ss_pred ccceEEEeeeeccce
Confidence 356777888888753
No 282
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=45.80 E-value=48 Score=26.31 Aligned_cols=43 Identities=14% Similarity=0.241 Sum_probs=31.9
Q ss_pred HHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cC-ceeeecCCC
Q 011052 79 SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-II-ASEALHGDI 121 (494)
Q Consensus 79 ~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~-~~~~lhg~~ 121 (494)
...+..+.++.++||+|.+-..+...+..|.. ++ .+..+.|++
T Consensus 47 ~~~~~~~~~~~~ivv~c~~g~~s~~a~~~l~~~G~~~v~~l~gG~ 91 (96)
T cd01444 47 DDWLGDLDRDRPVVVYCYHGNSSAQLAQALREAGFTDVRSLAGGF 91 (96)
T ss_pred HHHHhhcCCCCCEEEEeCCCChHHHHHHHHHHcCCceEEEcCCCH
Confidence 33444455678999999998888888888875 55 466777875
No 283
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=45.23 E-value=1.5e+02 Score=33.24 Aligned_cols=107 Identities=18% Similarity=0.218 Sum_probs=69.2
Q ss_pred cCcccHHHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhccC---ceeee--------------------cCCC----
Q 011052 69 TTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSII---ASEAL--------------------HGDI---- 121 (494)
Q Consensus 69 ~~~~~k~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~---~~~~l--------------------hg~~---- 121 (494)
+....|.-++..++... +.++||.+++...|+++++.|...+ .+..+ +-..
T Consensus 40 l~gs~ka~lia~l~~~~--~r~vLIVt~~~~~A~~l~~dL~~~~~~~~v~~f~s~~~~~~~~~~~P~~d~~~~~~~~~~~ 117 (652)
T PRK05298 40 VTGSGKTFTMANVIARL--QRPTLVLAHNKTLAAQLYSEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINE 117 (652)
T ss_pred CCCcHHHHHHHHHHHHh--CCCEEEEECCHHHHHHHHHHHHHhcCCCeEEEeCChhhccCccccCCCCcccccccCCCCh
Confidence 34456666666666543 4789999999999999999996432 12222 1111
Q ss_pred -CHHHHHHHHccccCCCeeEEEechhhhccCCCCc----ccEEEecCCCCChhhHHHHhcc
Q 011052 122 -SQHQRERTLNGFRQGKFTVLVATDVAARGLDIPN----VDLIIHYELPNDPETFVHRSGR 177 (494)
Q Consensus 122 -~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~----v~~VI~~~~P~~~~~y~qr~GR 177 (494)
-..+|..++.++.+++..|+|||..+-.++=-|+ ..+.+..+-..+.+.++.+.-.
T Consensus 118 ~~~~~R~~~l~~L~~~~~~ivv~s~~al~~~~~~~~~~~~~~~l~~G~~i~~~~l~~~L~~ 178 (652)
T PRK05298 118 EIERLRHSATKSLLERRDVIVVASVSCIYGLGSPEEYLKMVLSLRVGQEIDRRELLRRLVD 178 (652)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEcHHHhcCCCCHHHHHhceEEEeCCCCcCHHHHHHHHHH
Confidence 1447788888887766667788765556654443 3345667777777777666544
No 284
>PRK06958 single-stranded DNA-binding protein; Provisional
Probab=44.70 E-value=71 Score=29.71 Aligned_cols=6 Identities=17% Similarity=0.528 Sum_probs=2.4
Q ss_pred eEEEEe
Q 011052 287 VTLQLT 292 (494)
Q Consensus 287 ~t~~~~ 292 (494)
+++.|+
T Consensus 29 a~fsVA 34 (182)
T PRK06958 29 ANIRLA 34 (182)
T ss_pred EEEEEE
Confidence 334443
No 285
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=43.53 E-value=30 Score=27.16 Aligned_cols=37 Identities=14% Similarity=0.194 Sum_probs=29.7
Q ss_pred ccCCcEEEEcCChhhHHHHHHHHhc-cCc-eeeecCCCC
Q 011052 86 AKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDIS 122 (494)
Q Consensus 86 ~~~~~~IVF~~t~~~~~~l~~~L~~-~~~-~~~lhg~~~ 122 (494)
.+..++||||.+-..+..++..|.. ++. +..|.|++.
T Consensus 54 ~~~~~iv~~c~~g~~a~~~~~~l~~~G~~~v~~l~GG~~ 92 (100)
T smart00450 54 DKDKPVVVYCRSGNRSAKAAWLLRELGFKNVYLLDGGYK 92 (100)
T ss_pred CCCCeEEEEeCCCcHHHHHHHHHHHcCCCceEEecCCHH
Confidence 3567999999998888888888875 555 788888874
No 286
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=43.31 E-value=1.3e+02 Score=35.60 Aligned_cols=82 Identities=17% Similarity=0.314 Sum_probs=54.3
Q ss_pred HHHHHcc--ccCCCeeEEEechhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCC--C-CCceEEEecChhhHHHHH
Q 011052 126 RERTLNG--FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRA--G-KEGTAILMFTSSQRRTVR 200 (494)
Q Consensus 126 R~~~l~~--Fr~g~~~iLVaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~--G-~~g~~i~l~~~~e~~~l~ 200 (494)
+.....+ .++...++||.+|++-.|.|-|.+..++ .|-|---...+|.+.||.|. + ++.-.|+.+........+
T Consensus 580 ~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmY-vDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~gl~e~l~~ 658 (962)
T COG0610 580 KKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLY-VDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRGLKEALKK 658 (962)
T ss_pred HhhhhhhhcCcCCCCCEEEEEccccccCCccccceEE-eccccccchHHHHHHHhccCCCCCCCCcEEEECcchHHHHHH
Confidence 3444445 3557899999999999999999886544 56667778899999999995 3 233344444434444444
Q ss_pred HHHHHhCC
Q 011052 201 SLERDVGC 208 (494)
Q Consensus 201 ~le~~~~~ 208 (494)
.+.-+...
T Consensus 659 Al~~Y~~~ 666 (962)
T COG0610 659 ALKLYSNE 666 (962)
T ss_pred HHHHhhcc
Confidence 45444433
No 287
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=42.83 E-value=52 Score=29.19 Aligned_cols=46 Identities=11% Similarity=0.104 Sum_probs=34.5
Q ss_pred HHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cC-ceeeecCCCC
Q 011052 77 ILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-II-ASEALHGDIS 122 (494)
Q Consensus 77 ~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~-~~~~lhg~~~ 122 (494)
.|...+..+.++.++||+|.+-..+..++..|.. ++ .+..|.|++.
T Consensus 38 ~l~~~l~~l~~~~~vVv~c~~g~~a~~aa~~L~~~G~~~v~~L~GG~~ 85 (145)
T cd01535 38 QLAQALEKLPAAERYVLTCGSSLLARFAAADLAALTVKPVFVLEGGTA 85 (145)
T ss_pred HHHHHHHhcCCCCCEEEEeCCChHHHHHHHHHHHcCCcCeEEecCcHH
Confidence 3445555555667999999998888888888874 44 6889999963
No 288
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=42.09 E-value=70 Score=28.10 Aligned_cols=75 Identities=17% Similarity=0.267 Sum_probs=38.5
Q ss_pred HHHHHHHHHH-hccCCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhh
Q 011052 75 RTILSDLITV-YAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA 148 (494)
Q Consensus 75 ~~~L~~ll~~-~~~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~ 148 (494)
...++.|+.+ +..+.+++|+|+..+.++.|-+.|=. .++... .++-.+ ....|+|+++...
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d~~~a~~lD~~LW~~~~~sFlPH~~-~~~~~~------------~~~PV~i~~~~~~ 81 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPDEEQAEALDELLWTFSPDSFLPHGL-AGEPPA------------ARQPVLITWDQEA 81 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SSHHHHHHHHHHTTTSSTT----EEE-TT-SST------------T--SEEEE-TTS-
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHCCCCCCCCCCcc-cCCCCC------------CCCeEEEecCccc
Confidence 4666676654 46678999999999999999888832 222222 222111 1247999987643
Q ss_pred ccCCCCcccEEEecCC
Q 011052 149 RGLDIPNVDLIIHYEL 164 (494)
Q Consensus 149 ~GiDip~v~~VI~~~~ 164 (494)
...+..+++||.+.
T Consensus 82 --~~~~~~~vLinL~~ 95 (137)
T PF04364_consen 82 --NPNNHADVLINLSG 95 (137)
T ss_dssp -----S--SEEEE--S
T ss_pred --CCCCCCCEEEECCC
Confidence 22333678888653
No 289
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=42.00 E-value=1.3e+02 Score=28.21 Aligned_cols=86 Identities=20% Similarity=0.237 Sum_probs=48.4
Q ss_pred CCChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCc--EEEeccccccccccceEEEEEEcCc----ccHHH
Q 011052 3 AVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL--NIDLVGNQDEKLAEGIKLYAISTTA----TSKRT 76 (494)
Q Consensus 3 ~~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~--~i~~~~~~~~~~~~~i~~~~~~~~~----~~k~~ 76 (494)
|-||.+=++.|-+ .+.+++.+|+-|.+-|..+.+.+..... .|+++.+. .....+-+|..+.... .+|..
T Consensus 75 dp~fKef~e~ike---~di~fiVvSsGm~~fI~~lfe~ivgke~i~~idi~sn~-~~ih~dg~h~i~~~~ds~fG~dK~~ 150 (220)
T COG4359 75 DPGFKEFVEWIKE---HDIPFIVVSSGMDPFIYPLFEGIVGKERIYCIDIVSNN-DYIHIDGQHSIKYTDDSQFGHDKSS 150 (220)
T ss_pred CccHHHHHHHHHH---cCCCEEEEeCCCchHHHHHHHhhccccceeeeEEeecC-ceEcCCCceeeecCCccccCCCcch
Confidence 4455555555544 3679999999999999999998875432 35554322 2223333343333322 24544
Q ss_pred HHHHHHHHhccCCcEEEEcC
Q 011052 77 ILSDLITVYAKGGKTIVFTQ 96 (494)
Q Consensus 77 ~L~~ll~~~~~~~~~IVF~~ 96 (494)
.+. .+.++...++||-
T Consensus 151 vI~----~l~e~~e~~fy~G 166 (220)
T COG4359 151 VIH----ELSEPNESIFYCG 166 (220)
T ss_pred hHH----HhhcCCceEEEec
Confidence 433 3333344477774
No 290
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=41.33 E-value=32 Score=34.06 Aligned_cols=9 Identities=33% Similarity=0.405 Sum_probs=5.0
Q ss_pred CeeEEEech
Q 011052 137 KFTVLVATD 145 (494)
Q Consensus 137 ~~~iLVaT~ 145 (494)
.+-+|||++
T Consensus 100 GvLLlVa~~ 108 (271)
T COG1512 100 GVLLLVAMN 108 (271)
T ss_pred CEEEEEEcC
Confidence 344666664
No 291
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=41.09 E-value=39 Score=35.55 Aligned_cols=82 Identities=18% Similarity=0.220 Sum_probs=57.0
Q ss_pred EEEEEcCcccHHHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccC--CCeeE
Q 011052 64 LYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQ--GKFTV 140 (494)
Q Consensus 64 ~~~~~~~~~~k~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~--g~~~i 140 (494)
..|+..+.-.-..+..+|-... ..+-+|||.|-......-.+.|.+ .+++..|++.|+..+|.+++-++.. -.+++
T Consensus 38 DVyVsMPTGaGKSLCyQLPaL~-~~gITIV~SPLiALIkDQiDHL~~LKVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~ 116 (641)
T KOG0352|consen 38 DVYVSMPTGAGKSLCYQLPALV-HGGITIVISPLIALIKDQIDHLKRLKVPCESLNSKLSTVERSRIMGDLAKEKPTIKM 116 (641)
T ss_pred cEEEeccCCCchhhhhhchHHH-hCCeEEEehHHHHHHHHHHHHHHhcCCchhHhcchhhHHHHHHHHHHHHhcCCceeE
Confidence 3445554433223333332222 346899999998888766666665 7899999999999999999988865 35788
Q ss_pred EEechh
Q 011052 141 LVATDV 146 (494)
Q Consensus 141 LVaT~~ 146 (494)
|--|+.
T Consensus 117 LYITPE 122 (641)
T KOG0352|consen 117 LYITPE 122 (641)
T ss_pred EEEchh
Confidence 888874
No 292
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=41.08 E-value=34 Score=33.30 Aligned_cols=38 Identities=21% Similarity=0.274 Sum_probs=27.1
Q ss_pred cHHHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc
Q 011052 73 SKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 110 (494)
Q Consensus 73 ~k~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~ 110 (494)
.++.....++..+...+..|.|+.|+..+.+......+
T Consensus 48 ~~l~~A~~~v~~~~~~~g~ILfVgTK~~a~~~V~~~A~ 85 (252)
T COG0052 48 ERLREAYKFLRRIAANGGKILFVGTKKQAQEPVKEFAE 85 (252)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEechHHHHHHHHHHHH
Confidence 34444455666666668889999999999887666553
No 293
>PF13245 AAA_19: Part of AAA domain
Probab=40.52 E-value=51 Score=25.78 Aligned_cols=40 Identities=30% Similarity=0.385 Sum_probs=29.0
Q ss_pred cCcccHHHHHHHHHHHhc-----cCCcEEEEcCChhhHHHHHHHH
Q 011052 69 TTATSKRTILSDLITVYA-----KGGKTIVFTQTKRDADEVSLAL 108 (494)
Q Consensus 69 ~~~~~k~~~L~~ll~~~~-----~~~~~IVF~~t~~~~~~l~~~L 108 (494)
.+-.-|-..+..++..+. .+.+++|.++|+..++.+.+.+
T Consensus 18 ~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 18 PPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 344567755555544432 1678999999999999999998
No 294
>PTZ00240 60S ribosomal protein P0; Provisional
Probab=38.80 E-value=2e+02 Score=29.37 Aligned_cols=134 Identities=16% Similarity=0.172 Sum_probs=67.4
Q ss_pred HHHHHHHhCCCCCcEEEEeec-CChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHHHH-----
Q 011052 9 DVELILENLPPKRQSMLFSAT-MPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI----- 82 (494)
Q Consensus 9 ~i~~Il~~lp~~~q~ll~SAT-lp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll----- 82 (494)
.+++|.+.+.+...+++++.. ++....+-++..|+....+-+. . +.....-+.... .....+-+..++
T Consensus 11 ~v~~l~~~l~~y~~v~Iv~~~nv~s~qlq~IR~~lrg~a~~~~G-K-Ntlm~~AL~~~~----~~~~~~~~~~ll~~~~~ 84 (323)
T PTZ00240 11 YEERLVDCLTKYSCVLFVGMDNVRSQQVHDVRRALRGKAEFVMG-K-KTLQAKIVEKRA----QAKKASAEAKLFNDQCE 84 (323)
T ss_pred HHHHHHHHHHhCCEEEEEEecCCCcHHHHHHHHHhhCCcEEEEe-c-HHHHHHHHhhcc----ccccchhHHHHhhhhcc
Confidence 345555555556688888766 6766666666677754444332 1 111111111110 000001122232
Q ss_pred -HHhccCCcEEEEcCChhhHHHHHHHHhccCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEE-
Q 011052 83 -TVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII- 160 (494)
Q Consensus 83 -~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI- 160 (494)
..+-.+...||||+. .-.+|.+.|.+. +. +..+|.=++..+++||
T Consensus 85 ~~~~l~GnvgliFTn~--~p~ev~~~l~~~----------------------k~---------~a~AraG~IAp~dVvvp 131 (323)
T PTZ00240 85 EKNLLSGNTGLIFTNN--EVQEITSVLDSH----------------------RV---------KAPARVGAIAPCDVIVP 131 (323)
T ss_pred ccccccCCEEEEEeCC--CHHHHHHHHHHc----------------------CC---------cccccCCCCCCceEEEC
Confidence 133356778888876 455666666532 11 1112222344556666
Q ss_pred --ecCCCCChhhHHHHhcccCCC
Q 011052 161 --HYELPNDPETFVHRSGRTGRA 181 (494)
Q Consensus 161 --~~~~P~~~~~y~qr~GR~gR~ 181 (494)
+.+++.+...+.|..|=.-+.
T Consensus 132 aG~T~~~P~~~s~fq~LGIpTkI 154 (323)
T PTZ00240 132 AGSTGMEPTQTSFFQALNIATKI 154 (323)
T ss_pred CCCCCCCCcchHHHHHcCCCeEe
Confidence 455666778888888765554
No 295
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=38.56 E-value=89 Score=35.69 Aligned_cols=61 Identities=8% Similarity=0.097 Sum_probs=41.9
Q ss_pred HHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCC-----CCHHHHHHHHccccCCCeeEEEech
Q 011052 78 LSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGD-----ISQHQRERTLNGFRQGKFTVLVATD 145 (494)
Q Consensus 78 L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~-----~~~~~R~~~l~~Fr~g~~~iLVaT~ 145 (494)
+..++... .+..++|.|+++..|.+.++.+.. ++.+.+++++ +.+.++..+. .++|+++|+
T Consensus 102 Lpa~l~aL-~g~~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~~~~~~s~~~~~~~~~rr~~y------~~dIvygTp 172 (762)
T TIGR03714 102 MPLYLNAL-TGKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLGVVDDPDEEYDANEKRKIY------NSDIVYTTN 172 (762)
T ss_pred HHHHHHhh-cCCceEEeCCCHHHHHHHHHHHHHHHhhcCCcEEEEECCCCccccCHHHHHHhC------CCCEEEECc
Confidence 33334443 456899999999999999888853 4566665553 5555555442 478999998
No 296
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=35.88 E-value=1.5e+02 Score=27.35 Aligned_cols=62 Identities=10% Similarity=0.185 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhccCC-cEEEEcCChhhHHHHHHHHhcc---CceeeecCCCCHHHHHHHHccccCC
Q 011052 75 RTILSDLITVYAKGG-KTIVFTQTKRDADEVSLALTSI---IASEALHGDISQHQRERTLNGFRQG 136 (494)
Q Consensus 75 ~~~L~~ll~~~~~~~-~~IVF~~t~~~~~~l~~~L~~~---~~~~~lhg~~~~~~R~~~l~~Fr~g 136 (494)
.+++..+++.....+ ++-++-.+.+.++.+++.|++. +.+...||-.++.+.+.+++..+..
T Consensus 34 ~dl~~~l~~~~~~~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s 99 (177)
T TIGR00696 34 PDLMEELCQRAGKEKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARS 99 (177)
T ss_pred HHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHc
Confidence 355566666543334 5555556667778888888853 4555568988887777666665443
No 297
>PHA02558 uvsW UvsW helicase; Provisional
Probab=35.58 E-value=1.6e+02 Score=31.86 Aligned_cols=79 Identities=15% Similarity=0.144 Sum_probs=45.9
Q ss_pred cccHHHHHHHHHHHh-cc-CCcEEEEcCChhhHHHHHHHHhcc-----CceeeecCCCCHHHHHHHHccccCCCeeEEEe
Q 011052 71 ATSKRTILSDLITVY-AK-GGKTIVFTQTKRDADEVSLALTSI-----IASEALHGDISQHQRERTLNGFRQGKFTVLVA 143 (494)
Q Consensus 71 ~~~k~~~L~~ll~~~-~~-~~~~IVF~~t~~~~~~l~~~L~~~-----~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVa 143 (494)
..-|..+...+...+ .. ..++||+|+|++.+++.++.+.+. ..+..+.++... .....|+|+
T Consensus 139 GsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i~~g~~~-----------~~~~~I~Va 207 (501)
T PHA02558 139 SAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKIYSGTAK-----------DTDAPIVVS 207 (501)
T ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhccccccceeEEecCccc-----------CCCCCEEEe
Confidence 345655444333321 22 249999999999999999998752 123334444321 124679999
Q ss_pred ch-hhh-cc-CCCCcccEEE
Q 011052 144 TD-VAA-RG-LDIPNVDLII 160 (494)
Q Consensus 144 T~-~~~-~G-iDip~v~~VI 160 (494)
|. .+. .. ..+.++.+||
T Consensus 208 T~qsl~~~~~~~~~~~~~iI 227 (501)
T PHA02558 208 TWQSAVKQPKEWFDQFGMVI 227 (501)
T ss_pred eHHHHhhchhhhccccCEEE
Confidence 94 222 12 1345677777
No 298
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=34.71 E-value=86 Score=25.80 Aligned_cols=36 Identities=11% Similarity=0.010 Sum_probs=27.2
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhc-cCc--eeeecCCCC
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTS-IIA--SEALHGDIS 122 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-~~~--~~~lhg~~~ 122 (494)
++.+++|||.+-..+...+..|.. ++. +..+.|++.
T Consensus 65 ~~~~ivv~C~~G~rs~~a~~~L~~~G~~~~v~~l~gG~~ 103 (109)
T cd01533 65 PRTPIVVNCAGRTRSIIGAQSLINAGLPNPVAALRNGTQ 103 (109)
T ss_pred CCCeEEEECCCCchHHHHHHHHHHCCCCcceeEecCCHH
Confidence 346899999987777667777775 663 778889874
No 299
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=34.34 E-value=1.2e+02 Score=27.35 Aligned_cols=40 Identities=15% Similarity=0.119 Sum_probs=32.2
Q ss_pred CcccHHHHHHHHHHH-hccCCcEEEEcCChhhHHHHHHHHh
Q 011052 70 TATSKRTILSDLITV-YAKGGKTIVFTQTKRDADEVSLALT 109 (494)
Q Consensus 70 ~~~~k~~~L~~ll~~-~~~~~~~IVF~~t~~~~~~l~~~L~ 109 (494)
....+...++.|+.+ +..+.+++|.|+..+.++.|-+.|=
T Consensus 10 ~~~~~~~~acrL~~Ka~~~G~rv~I~~~d~~~~~~LD~~LW 50 (154)
T PRK06646 10 SDELLLKSILLLIEKCYYSDLKSVILTADADQQEMLNKNLW 50 (154)
T ss_pred CCChHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhc
Confidence 556788888888755 4667899999999999988888773
No 300
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=34.24 E-value=1.2e+02 Score=34.42 Aligned_cols=58 Identities=16% Similarity=0.210 Sum_probs=43.3
Q ss_pred ccCCcEEEEcCChhhHHHHHHHHh--ccCceeeecCCCCHHHHHHHHccc-cCCCeeEEEech
Q 011052 86 AKGGKTIVFTQTKRDADEVSLALT--SIIASEALHGDISQHQRERTLNGF-RQGKFTVLVATD 145 (494)
Q Consensus 86 ~~~~~~IVF~~t~~~~~~l~~~L~--~~~~~~~lhg~~~~~~R~~~l~~F-r~g~~~iLVaT~ 145 (494)
..+++-||.||-.-....+.+.-+ -.+.++++||+ +.+|....+.+ ..+..+|+|+|=
T Consensus 215 ~~~GPfLVi~P~StL~NW~~Ef~rf~P~l~~~~~~Gd--k~eR~~~~r~~~~~~~fdV~iTsY 275 (971)
T KOG0385|consen 215 GIPGPFLVIAPKSTLDNWMNEFKRFTPSLNVVVYHGD--KEERAALRRDIMLPGRFDVCITSY 275 (971)
T ss_pred CCCCCeEEEeeHhhHHHHHHHHHHhCCCcceEEEeCC--HHHHHHHHHHhhccCCCceEeehH
Confidence 346899999997666555554443 36889999998 68888877766 456889999984
No 301
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=33.67 E-value=61 Score=25.96 Aligned_cols=37 Identities=14% Similarity=0.027 Sum_probs=28.1
Q ss_pred ccCCcEEEEcCChhhHHHHHHHHhc-cC-ceeeecCCCC
Q 011052 86 AKGGKTIVFTQTKRDADEVSLALTS-II-ASEALHGDIS 122 (494)
Q Consensus 86 ~~~~~~IVF~~t~~~~~~l~~~L~~-~~-~~~~lhg~~~ 122 (494)
.++.++||+|++-..+...+..|.. ++ .+..+.|++.
T Consensus 54 ~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~GG~~ 92 (96)
T cd01529 54 GRATRYVLTCDGSLLARFAAQELLALGGKPVALLDGGTS 92 (96)
T ss_pred CCCCCEEEEeCChHHHHHHHHHHHHcCCCCEEEeCCCHH
Confidence 4567899999997778888877864 55 5777888863
No 302
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=33.34 E-value=46 Score=28.22 Aligned_cols=37 Identities=14% Similarity=0.162 Sum_probs=30.1
Q ss_pred ccCCcEEEEcCChhhHHHHHHHHhc-cC--ceeeecCCCC
Q 011052 86 AKGGKTIVFTQTKRDADEVSLALTS-II--ASEALHGDIS 122 (494)
Q Consensus 86 ~~~~~~IVF~~t~~~~~~l~~~L~~-~~--~~~~lhg~~~ 122 (494)
.++.+++|||.+-..+...+..|.. ++ .+..+.|++.
T Consensus 70 ~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~v~~l~GG~~ 109 (122)
T cd01526 70 DKDSPIYVVCRRGNDSQTAVRKLKELGLERFVRDIIGGLK 109 (122)
T ss_pred CCCCcEEEECCCCCcHHHHHHHHHHcCCccceeeecchHH
Confidence 3567899999998888888888886 67 5888999983
No 303
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=32.64 E-value=93 Score=35.68 Aligned_cols=70 Identities=19% Similarity=0.304 Sum_probs=55.7
Q ss_pred CeeEEEechhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCC--CCCce-----------EEEecChhhHHHHHHHH
Q 011052 137 KFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRA--GKEGT-----------AILMFTSSQRRTVRSLE 203 (494)
Q Consensus 137 ~~~iLVaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~--G~~g~-----------~i~l~~~~e~~~l~~le 203 (494)
..+.|.+-.++-.|.|-|+|=.++-.....+..+=+|.+||.-|- ...|. -.+++...+...++.|.
T Consensus 483 plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~Lq 562 (985)
T COG3587 483 PLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKALQ 562 (985)
T ss_pred cceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHHH
Confidence 478999999999999999999999999888999999999998883 23333 23466777777777776
Q ss_pred HHh
Q 011052 204 RDV 206 (494)
Q Consensus 204 ~~~ 206 (494)
+..
T Consensus 563 kEI 565 (985)
T COG3587 563 KEI 565 (985)
T ss_pred HHH
Confidence 654
No 304
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=32.07 E-value=1.1e+02 Score=24.77 Aligned_cols=37 Identities=16% Similarity=0.135 Sum_probs=28.1
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhc-cC-ceeeecCCCCH
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTS-II-ASEALHGDISQ 123 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-~~-~~~~lhg~~~~ 123 (494)
++.+++|||++-..+...+..|.+ ++ .+..+.|++..
T Consensus 57 ~~~~vv~~c~~g~rs~~~~~~l~~~G~~~v~~l~GG~~~ 95 (101)
T cd01528 57 PDKDIVVLCHHGGRSMQVAQWLLRQGFENVYNLQGGIDA 95 (101)
T ss_pred CCCeEEEEeCCCchHHHHHHHHHHcCCccEEEecCCHHH
Confidence 467999999998777777777775 55 47788888643
No 305
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=32.01 E-value=1e+02 Score=25.22 Aligned_cols=45 Identities=9% Similarity=0.079 Sum_probs=32.1
Q ss_pred HHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCc-eeeecCCCC
Q 011052 78 LSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDIS 122 (494)
Q Consensus 78 L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~-~~~lhg~~~ 122 (494)
+...+.....+.+++|+|.+-..+...+..|.. ++. +..+.|++.
T Consensus 48 l~~~~~~~~~~~~ivv~c~~g~~s~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T PRK00162 48 LGAFMRQADFDTPVMVMCYHGNSSQGAAQYLLQQGFDVVYSIDGGFE 94 (108)
T ss_pred HHHHHHhcCCCCCEEEEeCCCCCHHHHHHHHHHCCchheEEecCCHH
Confidence 334444455667899999988888888888875 554 677888874
No 306
>PF01751 Toprim: Toprim domain; InterPro: IPR006171 This is a conserved region from DNA primase. This corresponds to the Toprim (topoisomerase-primase) domain common to DnaG primases, topoisomerases, OLD family nucleases and RecR/M DNA repair proteins []. Both DnaG motifs IV and V are present in the alignment, the DxD (V) motif may be involved in Mg2+ binding and mutations to the conserved glutamate (IV) completely abolish DnaG type primase activity. DNA primase 2.7.7.6 from EC is a nucleotidyltransferase it synthesizes the oligoribonucleotide primers required for DNA replication on the lagging strand of the replication fork; it can also prime the leading stand and has been implicated in cell division []. This family also includes the atypical archaeal A subunit from type II DNA topoisomerases []. Type II DNA topoisomerases catalyse the relaxation of DNA supercoiling by causing transient double strand breaks.; PDB: 2ZJT_A 3IG0_A 3M4I_A 3NUH_B 1GKU_B 1GL9_C 3PWT_A 1CY4_A 1ECL_A 1CY7_A ....
Probab=31.62 E-value=26 Score=28.70 Aligned_cols=61 Identities=18% Similarity=0.254 Sum_probs=38.7
Q ss_pred EEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHH------------HHHHHHccccCCCeeEEEechhhhccC
Q 011052 91 TIVFTQTKRDADEVSLALTS-IIASEALHGDISQH------------QRERTLNGFRQGKFTVLVATDVAARGL 151 (494)
Q Consensus 91 ~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~------------~R~~~l~~Fr~g~~~iLVaT~~~~~Gi 151 (494)
.||.+.....+..+++.|.. .+.+.+..|.+-.. .+.+.+.+.-...-.|++|||.-..|-
T Consensus 1 ~liIvE~ps~a~~i~~~l~~~~~~v~~~~Ghl~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~iiiatD~D~EGe 74 (100)
T PF01751_consen 1 ELIIVEKPSDAKAIAKALGGEEYIVIATSGHLLELAKPEDYDPKDKKKQIKNLKKLLKKADEIIIATDPDREGE 74 (100)
T ss_dssp EEEEESSHHHHHHHHHHSSTTTEEEEEESSSSEESTTSSHHHCHTTHHHHHHHHHHHHSCSEEEEEC-SSHHHH
T ss_pred CEEEEeCHHHHHHHHHHcCCCCEEEEEeCCcccccccccccccccccccchhhHHHhhhccEeeecCCCChHHH
Confidence 47888999999999999873 35566666654211 224444444344567999999766553
No 307
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=31.60 E-value=5.2e+02 Score=25.59 Aligned_cols=81 Identities=22% Similarity=0.344 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHhccCCcEEEEcCCh-hhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhc-c
Q 011052 74 KRTILSDLITVYAKGGKTIVFTQTK-RDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR-G 150 (494)
Q Consensus 74 k~~~L~~ll~~~~~~~~~IVF~~t~-~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~-G 150 (494)
..++|.+.+..+...+.+|||.+-+ +.++++|+.+-- .-.-.++||.+..-.| . .|+.+++|-.+.... -
T Consensus 165 N~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~-----~--~Gkk~~~ies~~s~eeL 237 (300)
T COG4152 165 NVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRR-----S--FGKKRLVIESDLSLEEL 237 (300)
T ss_pred hHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHH-----h--cCCceEEEeccCchHHH
Confidence 4577888887777789999998764 678888887652 1234567777422211 1 245667777654443 5
Q ss_pred CCCCcccEEEe
Q 011052 151 LDIPNVDLIIH 161 (494)
Q Consensus 151 iDip~v~~VI~ 161 (494)
-++|.|..+..
T Consensus 238 ~~ipgi~~~~~ 248 (300)
T COG4152 238 ANIPGILKITE 248 (300)
T ss_pred hcCCCceeeee
Confidence 56777766654
No 308
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=31.13 E-value=2e+02 Score=29.00 Aligned_cols=104 Identities=15% Similarity=0.186 Sum_probs=53.8
Q ss_pred ccHHHHHHHHHHHh-----cc-CCcEEEEcCChhhHHHHHHHHh-ccCceeeecCCCCHHHHHHHHc-------------
Q 011052 72 TSKRTILSDLITVY-----AK-GGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLN------------- 131 (494)
Q Consensus 72 ~~k~~~L~~ll~~~-----~~-~~~~IVF~~t~~~~~~l~~~L~-~~~~~~~lhg~~~~~~R~~~l~------------- 131 (494)
..|...|.++++.. .. +-++||.|+..++.+.|...|. +.+...-+.|.+...+....-+
T Consensus 95 S~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llGk~~~~kr~sg~~l~~~~~~~~~~~~~~~~~~~~~~ 174 (297)
T PF11496_consen 95 SGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLGKKLNYKRYSGESLYDEKHKVPKNGNTESNSSNNSK 174 (297)
T ss_dssp -HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S---------------
T ss_pred CchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHccCCeeEEecCCCCCcCccccCCcccccccccccccc
Confidence 46888999988877 22 3489999999999998888776 4666666767655544433220
Q ss_pred --cccCCCeeEEEe-chhhhcc----CCCCcccEEEecCCCCChh-hHHHHh
Q 011052 132 --GFRQGKFTVLVA-TDVAARG----LDIPNVDLIIHYELPNDPE-TFVHRS 175 (494)
Q Consensus 132 --~Fr~g~~~iLVa-T~~~~~G----iDip~v~~VI~~~~P~~~~-~y~qr~ 175 (494)
.=.+-.+.|-++ |+-.... ++-..+++||-+|.-.+.. ..+|++
T Consensus 175 ~~~~~~~~~~i~L~ts~~l~~~~~~~~~~~~~d~IIsfD~~~d~~~p~i~~l 226 (297)
T PF11496_consen 175 KKDKGSLSVWIHLITSDQLYNNKPPLLSNYNFDLIISFDPSFDTSLPSIEQL 226 (297)
T ss_dssp -------SEEEEEEESS---TTTS--TT-S-EEEEEE-SST--TTSHHHHHH
T ss_pred cccccccceEEEEecCccccccCCCccccCCcCEEEEecCCCCCCChHHHHH
Confidence 000123444444 4433332 2234778999999765543 345554
No 309
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=31.05 E-value=85 Score=26.88 Aligned_cols=38 Identities=16% Similarity=0.226 Sum_probs=28.5
Q ss_pred hccCCcEEEEcC-ChhhHHHHHHHHhc-cCceeeecCCCC
Q 011052 85 YAKGGKTIVFTQ-TKRDADEVSLALTS-IIASEALHGDIS 122 (494)
Q Consensus 85 ~~~~~~~IVF~~-t~~~~~~l~~~L~~-~~~~~~lhg~~~ 122 (494)
..++.++||||. +-..+...+..|+. ++.+..|.|++.
T Consensus 83 i~~~~~vvvyC~~~G~rs~~a~~~L~~~G~~v~~L~GG~~ 122 (128)
T cd01520 83 LERDPKLLIYCARGGMRSQSLAWLLESLGIDVPLLEGGYK 122 (128)
T ss_pred cCCCCeEEEEeCCCCccHHHHHHHHHHcCCceeEeCCcHH
Confidence 345679999996 44556677777775 778889999974
No 310
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=30.52 E-value=45 Score=37.49 Aligned_cols=76 Identities=22% Similarity=0.337 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHh-ccCCcEEEEcCChhhHHHHHHHHhccCceeeecCCCCHHHHHHHHccccC---CCeeEEEechhhhc
Q 011052 74 KRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQ---GKFTVLVATDVAAR 149 (494)
Q Consensus 74 k~~~L~~ll~~~-~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~lhg~~~~~~R~~~l~~Fr~---g~~~iLVaT~~~~~ 149 (494)
|..+|...+..+ ..+.+++||..-....+.+...+...-....+.|..+-.+|+.++++|.. .....|.+|...+.
T Consensus 616 k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~ 695 (696)
T KOG0383|consen 616 KLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEGKYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGL 695 (696)
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccCcceeccCCccchhhhhhccccCCCCccceEEEeecccccC
Confidence 444455444444 45679999999999999888888753377889999999999999999983 45678888876543
No 311
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=30.50 E-value=66 Score=26.65 Aligned_cols=39 Identities=15% Similarity=0.228 Sum_probs=28.9
Q ss_pred HhccCCcEEEEcCCh--hhHHHHHHHHhc-cCceeeecCCCC
Q 011052 84 VYAKGGKTIVFTQTK--RDADEVSLALTS-IIASEALHGDIS 122 (494)
Q Consensus 84 ~~~~~~~~IVF~~t~--~~~~~l~~~L~~-~~~~~~lhg~~~ 122 (494)
...++.++||||++- ..+..++..|.. ++.+..+.|++.
T Consensus 60 ~i~~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~v~~l~GG~~ 101 (110)
T cd01521 60 KLDKEKLFVVYCDGPGCNGATKAALKLAELGFPVKEMIGGLD 101 (110)
T ss_pred cCCCCCeEEEEECCCCCchHHHHHHHHHHcCCeEEEecCCHH
Confidence 345668999999975 367777777765 677888888874
No 312
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=30.02 E-value=68 Score=25.78 Aligned_cols=37 Identities=11% Similarity=0.155 Sum_probs=28.6
Q ss_pred ccCCcEEEEcCChhhHHHHHHHHhc-cC-ceeeecCCCC
Q 011052 86 AKGGKTIVFTQTKRDADEVSLALTS-II-ASEALHGDIS 122 (494)
Q Consensus 86 ~~~~~~IVF~~t~~~~~~l~~~L~~-~~-~~~~lhg~~~ 122 (494)
.++.+++|+|++-..+...+..|.+ ++ .+..++|++.
T Consensus 52 ~~~~~iv~~c~~g~~s~~~~~~L~~~g~~~v~~l~gG~~ 90 (99)
T cd01527 52 VGANAIIFHCRSGMRTQQNAERLAAISAGEAYVLEGGLD 90 (99)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHcCCccEEEeeCCHH
Confidence 4567999999998878888888875 44 5777888863
No 313
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=29.41 E-value=1.9e+02 Score=26.32 Aligned_cols=66 Identities=11% Similarity=0.192 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhccC-CcEEEEcCChhhHHHHHHHHhcc---Ccee-eecCCCCHHHHHHHHccccCCCeeE
Q 011052 75 RTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTSI---IASE-ALHGDISQHQRERTLNGFRQGKFTV 140 (494)
Q Consensus 75 ~~~L~~ll~~~~~~-~~~IVF~~t~~~~~~l~~~L~~~---~~~~-~lhg~~~~~~R~~~l~~Fr~g~~~i 140 (494)
.+++..++...... .++-++-.+.+.++.+++.|++. +.++ ..|+-++..+.+.+++..+....+|
T Consensus 34 ~dl~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdi 104 (172)
T PF03808_consen 34 SDLFPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINASGPDI 104 (172)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHcCCCE
Confidence 34455555544333 45555566677778888888864 3444 4567677888888888766554433
No 314
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=29.28 E-value=3.6e+02 Score=26.34 Aligned_cols=105 Identities=21% Similarity=0.200 Sum_probs=58.0
Q ss_pred HHHHHHHHhCC-CCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccc--------------cccccccceEEEEEEcCcc
Q 011052 8 EDVELILENLP-PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGN--------------QDEKLAEGIKLYAISTTAT 72 (494)
Q Consensus 8 ~~i~~Il~~lp-~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~--------------~~~~~~~~i~~~~~~~~~~ 72 (494)
+++-.++..+. .+..++.+|+-.|.-.....+. |+. .-|++... ........+..-.+.+...
T Consensus 84 ~~~~~~i~~lq~~~~~v~alT~~~~~~~~~t~~~-Lk~-~gi~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~GIlft~~~ 161 (252)
T PF11019_consen 84 SDVPNIINSLQNKGIPVIALTARGPNMEDWTLRE-LKS-LGIDFSSSSFPEDGIISFPVFDSALSRAPSFYDGILFTGGQ 161 (252)
T ss_pred hhHHHHHHHHHHCCCcEEEEcCCChhhHHHHHHH-HHH-CCCCccccccccCcceecccccCCCCCCceeecCeEEeCCC
Confidence 34455555554 4578899988765433332222 211 11211111 0111112233334566677
Q ss_pred cHHHHHHHHHHHhccCCcEEEEc-CChhhHHHHHHHHhc-cCce
Q 011052 73 SKRTILSDLITVYAKGGKTIVFT-QTKRDADEVSLALTS-IIAS 114 (494)
Q Consensus 73 ~k~~~L~~ll~~~~~~~~~IVF~-~t~~~~~~l~~~L~~-~~~~ 114 (494)
+|-++|..++.......+.|||+ .+.+....+.+.+.. ++..
T Consensus 162 ~KG~~L~~fL~~~~~~pk~IIfIDD~~~nl~sv~~a~k~~~I~f 205 (252)
T PF11019_consen 162 DKGEVLKYFLDKINQSPKKIIFIDDNKENLKSVEKACKKSGIDF 205 (252)
T ss_pred ccHHHHHHHHHHcCCCCCeEEEEeCCHHHHHHHHHHHhhCCCcE
Confidence 89999999998886555566665 567778888777775 4433
No 315
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=29.23 E-value=1.1e+02 Score=25.62 Aligned_cols=37 Identities=5% Similarity=0.015 Sum_probs=28.2
Q ss_pred ccCCcEEEEcCChhhHHHHHHHHhc-cCc-eeeecCCCC
Q 011052 86 AKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDIS 122 (494)
Q Consensus 86 ~~~~~~IVF~~t~~~~~~l~~~L~~-~~~-~~~lhg~~~ 122 (494)
.+..++||||.+-..+...+..|.. ++. +..+.|++.
T Consensus 62 ~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~v~~l~gG~~ 100 (117)
T cd01522 62 GKDRPVLLLCRSGNRSIAAAEAAAQAGFTNVYNVLEGFE 100 (117)
T ss_pred CCCCeEEEEcCCCccHHHHHHHHHHCCCCeEEECcCcee
Confidence 4567899999998888888888875 554 666777764
No 316
>PRK05320 rhodanese superfamily protein; Provisional
Probab=29.12 E-value=1.9e+02 Score=28.44 Aligned_cols=37 Identities=16% Similarity=0.266 Sum_probs=30.8
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhc-cCc-eeeecCCCCH
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDISQ 123 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-~~~-~~~lhg~~~~ 123 (494)
++.++++||.+=..++..+..|.+ ++. +..|.|++..
T Consensus 174 kdk~IvvyC~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi~~ 212 (257)
T PRK05320 174 AGKTVVSFCTGGIRCEKAAIHMQEVGIDNVYQLEGGILK 212 (257)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCcceEEeccCHHH
Confidence 567899999998889999998875 664 7889999844
No 317
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=28.89 E-value=5.2e+02 Score=28.29 Aligned_cols=136 Identities=10% Similarity=0.095 Sum_probs=74.1
Q ss_pred hHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEec-cccccccc--cceEEEEEEcCcccHHHHHHHHH
Q 011052 6 FEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLV-GNQDEKLA--EGIKLYAISTTATSKRTILSDLI 82 (494)
Q Consensus 6 F~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~-~~~~~~~~--~~i~~~~~~~~~~~k~~~L~~ll 82 (494)
+.+-+++|....+...++-.+.+.+-..+....+....+...|-+. +..-..+. .++....+.+...+-+..|...
T Consensus 15 l~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~dviIsrG~ta~~i~~~~~iPVv~i~~s~~Dil~al~~a- 93 (526)
T TIGR02329 15 LFDLFRDIAPEFDHRANITPIQLGFEDAVREIRQRLGAERCDVVVAGGSNGAYLKSRLSLPVIVIKPTGFDVMQALARA- 93 (526)
T ss_pred HHHHHHHHHHhCCCCceEEEEeccHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHhCCCCEEEecCChhhHHHHHHHH-
Confidence 3455666666665446677888887655554434343432222221 11111111 1233444444444555544333
Q ss_pred HHhccCCcEEEEcCChhhHHHHHHHHhccCceeeecCCCCHHHHHHHHccccCCCeeEEEech
Q 011052 83 TVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (494)
Q Consensus 83 ~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~ 145 (494)
+.+...--+|-|-+....++.+++.|.-.+....+|.. ++-...++..+...++++|+..
T Consensus 94 ~~~~~~ia~vg~~~~~~~~~~~~~ll~~~i~~~~~~~~---~e~~~~~~~l~~~G~~~viG~~ 153 (526)
T TIGR02329 94 RRIASSIGVVTHQDTPPALRRFQAAFNLDIVQRSYVTE---EDARSCVNDLRARGIGAVVGAG 153 (526)
T ss_pred HhcCCcEEEEecCcccHHHHHHHHHhCCceEEEEecCH---HHHHHHHHHHHHCCCCEEECCh
Confidence 23322223455667778888999999777777777764 4445555666666678887654
No 318
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=28.76 E-value=98 Score=27.75 Aligned_cols=35 Identities=20% Similarity=0.345 Sum_probs=26.2
Q ss_pred HHHHHHHH-HhccCCcEEEEcCChhhHHHHHHHHhc
Q 011052 76 TILSDLIT-VYAKGGKTIVFTQTKRDADEVSLALTS 110 (494)
Q Consensus 76 ~~L~~ll~-~~~~~~~~IVF~~t~~~~~~l~~~L~~ 110 (494)
.+|.++++ .+....++||..||+-.++++++.|+.
T Consensus 20 ~vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~~ 55 (148)
T PF07652_consen 20 RVLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALKG 55 (148)
T ss_dssp THHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTT
T ss_pred cccHHHHHHHHHccCeEEEecccHHHHHHHHHHHhc
Confidence 34555554 445678999999999999999999974
No 319
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=28.71 E-value=63 Score=26.17 Aligned_cols=37 Identities=22% Similarity=0.252 Sum_probs=27.1
Q ss_pred ccCCcEEEEcCChhhHHHHHHHHhc-cCc-eeeecCCCC
Q 011052 86 AKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDIS 122 (494)
Q Consensus 86 ~~~~~~IVF~~t~~~~~~l~~~L~~-~~~-~~~lhg~~~ 122 (494)
.++.++||+|.+-..+...+..|.. ++. +..|.|++.
T Consensus 59 ~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 97 (101)
T cd01518 59 LKGKKVLMYCTGGIRCEKASAYLKERGFKNVYQLKGGIL 97 (101)
T ss_pred cCCCEEEEECCCchhHHHHHHHHHHhCCcceeeechhHH
Confidence 4567899999986666677777764 664 777888763
No 320
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=28.64 E-value=77 Score=25.35 Aligned_cols=35 Identities=17% Similarity=0.190 Sum_probs=26.8
Q ss_pred CCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCC
Q 011052 88 GGKTIVFTQTKRDADEVSLALTS-IIASEALHGDIS 122 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~ 122 (494)
+.++++||.+-..+...+..|.. ++.+..+.|++.
T Consensus 56 ~~~iv~~c~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 91 (95)
T cd01534 56 GARIVLADDDGVRADMTASWLAQMGWEVYVLEGGLA 91 (95)
T ss_pred CCeEEEECCCCChHHHHHHHHHHcCCEEEEecCcHH
Confidence 46899999987777777777864 677777888863
No 321
>PF02445 NadA: Quinolinate synthetase A protein; InterPro: IPR003473 Quinolinate synthetase catalyzes the second step of the de novo biosynthetic pathway of pyridine nucleotide formation. In particular, quinolinate synthetase is involved in the condensation of dihydroxyacetone phosphate and iminoaspartate to form quinolinic acid []. This synthesis requires two enzymes, an FAD-containing "B protein" and an "A protein".; GO: 0008987 quinolinate synthetase A activity, 0009435 NAD biosynthetic process; PDB: 2QS0_A 1WZU_A.
Probab=28.58 E-value=2.8e+02 Score=27.93 Aligned_cols=194 Identities=18% Similarity=0.276 Sum_probs=82.1
Q ss_pred hHHHHHHHHHhCCCCCcEEEE---eecC-------ChHHHHHHHHHcCCCcEEEecccccc-ccccceEEEEEEcCcccH
Q 011052 6 FEEDVELILENLPPKRQSMLF---SATM-------PSWVKKLSRKYLDNPLNIDLVGNQDE-KLAEGIKLYAISTTATSK 74 (494)
Q Consensus 6 F~~~i~~Il~~lp~~~q~ll~---SATl-------p~~i~~l~~~~l~~p~~i~~~~~~~~-~~~~~i~~~~~~~~~~~k 74 (494)
|.-+.-+||. | +.+ +++ .|.. +..+.++.++| .+..+|.++...-. +. +-.++|....-
T Consensus 57 FMAEtAkIL~--P-~K~-VllPd~~AgC~MAdm~~~~~v~~~k~~~-p~~~vV~YVNssAevKA-----~sdi~cTSsNA 126 (296)
T PF02445_consen 57 FMAETAKILN--P-DKK-VLLPDPEAGCPMADMATAEDVRELKEEY-PDAAVVTYVNSSAEVKA-----ESDICCTSSNA 126 (296)
T ss_dssp HHHHHHHHH---T-TSE-EE-SS--------TT--HHHHHHHHHHS-TTS-EEEESSS-HHHHT-----T-SEEE-TTTH
T ss_pred ehHhhHHhhC--C-CCE-EEecCCCCCCchhhhCCHHHHHHHHHHC-CCCeEEEEecChHHHHc-----cCCeEEECccH
Confidence 6666667775 3 333 333 2222 24455555555 44455555532211 11 11223333333
Q ss_pred HHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhccC----ceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhcc
Q 011052 75 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSII----ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 150 (494)
Q Consensus 75 ~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~----~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~G 150 (494)
. ++++.+ +.++-|+|.|-+.....+.+.+.+.+ ..+.+|-.++.++-.++.++
T Consensus 127 ~----kIv~~l-~~~~~IlF~PD~nLG~~v~~~~~k~ii~w~G~C~VH~~f~~~~i~~~r~~------------------ 183 (296)
T PF02445_consen 127 V----KIVRSL-PQDKKILFLPDKNLGRYVARQTGKNIILWPGYCPVHERFTPEDIEKAREK------------------ 183 (296)
T ss_dssp H----HHHHCS-S-SE-EEEES-HHHHHHHHHHH--EEEESSSS--TGGG--HHHHHHHHCC------------------
T ss_pred H----HHHHHh-cCCCeEEEcCcHHHHHHHHHhhCCeEEEECCCcccccccCHHHHHHHHHH------------------
Confidence 3 344443 44566999999999999998886432 45678888887776655554
Q ss_pred CCCCcccEEEecCCCCChhhHHHHhcccCC----CC-CCceEEEecChhhHHHHHHHHHHhCCC-ceecC-CCCHHHHHH
Q 011052 151 LDIPNVDLIIHYELPNDPETFVHRSGRTGR----AG-KEGTAILMFTSSQRRTVRSLERDVGCK-FEFVS-PPVVEDVLE 223 (494)
Q Consensus 151 iDip~v~~VI~~~~P~~~~~y~qr~GR~gR----~G-~~g~~i~l~~~~e~~~l~~le~~~~~~-~~~~~-~p~~~~i~~ 223 (494)
.|++.+++|-+.|..+-..-.-+|-|.- +. .+...+++ -+|...+.+|.+....+ |-... ...-..+..
T Consensus 184 --~P~a~vlvHPEC~~ev~~~AD~vGSTs~ii~~v~~~~~~~~iI--gTE~gl~~~L~~~~p~k~f~~~~~~~~C~~Mk~ 259 (296)
T PF02445_consen 184 --HPDAKVLVHPECPPEVVELADFVGSTSGIIKYVKESPAKEFII--GTEIGLVHRLKKENPDKEFIPLSPCAICPNMKK 259 (296)
T ss_dssp --STTSEEEE-TTS-HHHHCT-SEE--HHHHHHHCCG-S--EEEE--ES-CHHHHHHHHH-TTSEEEETTTTSSSTT---
T ss_pred --CcCCEEEECCCCCHHHHHHhhhcCCHHHHHHHHHhCCCCeEEE--EecchHHHHHHHHCCCcEEEeCCCCCcCcCccc
Confidence 3666777776665433222222222111 00 12223333 34566777887766432 32222 111133334
Q ss_pred HHHHHHHHHHccC
Q 011052 224 SSAEQVVATLNGV 236 (494)
Q Consensus 224 ~~~~~~~~~l~~~ 236 (494)
..++.+...|...
T Consensus 260 ~tl~~l~~~L~~~ 272 (296)
T PF02445_consen 260 ITLEKLLDALENL 272 (296)
T ss_dssp --HHHHHHHHHHT
T ss_pred cCHHHHHHHHhcC
Confidence 4455555555543
No 322
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=28.14 E-value=1.1e+02 Score=25.42 Aligned_cols=45 Identities=20% Similarity=0.135 Sum_probs=30.5
Q ss_pred HHHHHHHHh--ccCCcEEEEcCChhhHHHHHHHHhc-cC-ceeeecCCC
Q 011052 77 ILSDLITVY--AKGGKTIVFTQTKRDADEVSLALTS-II-ASEALHGDI 121 (494)
Q Consensus 77 ~L~~ll~~~--~~~~~~IVF~~t~~~~~~l~~~L~~-~~-~~~~lhg~~ 121 (494)
.+..++... .++.++||||++-..+..++..|.. ++ .+..+.|++
T Consensus 65 ~~~~~~~~~~~~~~~~iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~ 113 (118)
T cd01449 65 ELRALFAALGITPDKPVIVYCGSGVTACVLLLALELLGYKNVRLYDGSW 113 (118)
T ss_pred HHHHHHHHcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeeeCChH
Confidence 344444443 2567999999997777777877864 55 366777775
No 323
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=27.90 E-value=2.3e+02 Score=25.73 Aligned_cols=63 Identities=11% Similarity=0.221 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhcc-CCcEEEEcCChhhHHHHHHHHhcc---Cceee-ecCCCCHHHHHHHHccccCCC
Q 011052 75 RTILSDLITVYAK-GGKTIVFTQTKRDADEVSLALTSI---IASEA-LHGDISQHQRERTLNGFRQGK 137 (494)
Q Consensus 75 ~~~L~~ll~~~~~-~~~~IVF~~t~~~~~~l~~~L~~~---~~~~~-lhg~~~~~~R~~~l~~Fr~g~ 137 (494)
.+++..+++.... +.++-++-.+.+.++.+++.|++. +.++. .|+-+...+...+++..+...
T Consensus 32 ~dl~~~ll~~~~~~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~~ 99 (171)
T cd06533 32 SDLMPALLELAAQKGLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINASG 99 (171)
T ss_pred HHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHHcC
Confidence 3455566655533 456666677777888888888863 44444 677777777666666554433
No 324
>COG4029 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.86 E-value=4e+02 Score=23.08 Aligned_cols=45 Identities=22% Similarity=0.360 Sum_probs=31.6
Q ss_pred cCccchhHHHHHhhhhcCcCccccccEEEeecCCcceeEEecCHHHHHHHHhhc
Q 011052 299 RGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQ 352 (494)
Q Consensus 299 ~~~~~~~~i~~~i~~~~~~~~~~ig~i~~~~~~~~~gs~~d~~~~~~~~~~~~~ 352 (494)
...++|.+++.+|+...+- +.+.... .|++++-|++.+.++.++-
T Consensus 14 sa~vsp~elv~~l~~~~~P-------vtiKeTC--fGaii~G~Ed~v~klveri 58 (142)
T COG4029 14 SAGVSPKELVQKLLELSPP-------VTIKETC--FGAIIDGPEDEVRKLVERI 58 (142)
T ss_pred ccCcChHHHHHHHHhcCCC-------eEeeeee--eeeeecCcHHHHHHHHHHH
Confidence 4568899999998865431 2222221 3789999999999988763
No 325
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=27.53 E-value=4.3e+02 Score=23.28 Aligned_cols=60 Identities=10% Similarity=-0.027 Sum_probs=35.2
Q ss_pred ceEEEEecCCccccCccchhHHHHHhhhhcCcCccccccEEEeecC----CcceeEEec-CHHHHHHHHhhcCC
Q 011052 286 WVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADD----RVQGAVFDL-PEEIAKELLNKQIP 354 (494)
Q Consensus 286 ~~t~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~ig~i~~~~~~----~~~gs~~d~-~~~~~~~~~~~~~~ 354 (494)
..+|+|.. . ...++..+|..++...+. |-.+.+..+. ..--+||+. ..+.|+.+++.+..
T Consensus 34 ~~~lfVgn-L---~~~~te~~L~~~F~~~G~-----I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng 98 (144)
T PLN03134 34 STKLFIGG-L---SWGTDDASLRDAFAHFGD-----VVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDG 98 (144)
T ss_pred CCEEEEeC-C---CCCCCHHHHHHHHhcCCC-----eEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCC
Confidence 44566642 2 234678899998876543 4455554332 111267776 46777888876543
No 326
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=27.36 E-value=1.7e+02 Score=33.98 Aligned_cols=62 Identities=11% Similarity=0.075 Sum_probs=46.6
Q ss_pred HHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEech
Q 011052 77 ILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (494)
Q Consensus 77 ~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~ 145 (494)
+|..++..+ .+..+.|.+++...|.+.++.+.. ++.|.++.+++++.+|.... .++|+++|+
T Consensus 113 ~lp~~l~al-~g~~VhIvT~ndyLA~RD~e~m~~l~~~lGlsv~~i~~~~~~~~r~~~Y------~~dI~YgT~ 179 (908)
T PRK13107 113 TLPAYLNAL-TGKGVHVITVNDYLARRDAENNRPLFEFLGLTVGINVAGLGQQEKKAAY------NADITYGTN 179 (908)
T ss_pred HHHHHHHHh-cCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHhcC------CCCeEEeCC
Confidence 344444444 456799999999999999888763 57888999999987665443 457899887
No 327
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=27.04 E-value=97 Score=23.74 Aligned_cols=36 Identities=14% Similarity=0.195 Sum_probs=28.1
Q ss_pred ccCCcEEEEcCChhhHHHHHHHHhc-c-CceeeecCCC
Q 011052 86 AKGGKTIVFTQTKRDADEVSLALTS-I-IASEALHGDI 121 (494)
Q Consensus 86 ~~~~~~IVF~~t~~~~~~l~~~L~~-~-~~~~~lhg~~ 121 (494)
.++.++||+|.....+..++..|.. + ..+..+-|++
T Consensus 48 ~~~~~vv~~c~~~~~a~~~~~~l~~~G~~~v~~l~gG~ 85 (89)
T cd00158 48 DKDKPIVVYCRSGNRSARAAKLLRKAGGTNVYNLEGGM 85 (89)
T ss_pred CCCCeEEEEeCCCchHHHHHHHHHHhCcccEEEecCCh
Confidence 4568999999998888889998886 3 4566777775
No 328
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=26.93 E-value=1.2e+02 Score=25.29 Aligned_cols=37 Identities=14% Similarity=0.117 Sum_probs=27.2
Q ss_pred ccCCcEEEEcCC-hhhHHHHHHHHhc-cCc-eeeecCCCC
Q 011052 86 AKGGKTIVFTQT-KRDADEVSLALTS-IIA-SEALHGDIS 122 (494)
Q Consensus 86 ~~~~~~IVF~~t-~~~~~~l~~~L~~-~~~-~~~lhg~~~ 122 (494)
.++.++||||.+ -..+..++..|.. +++ +..+.|++.
T Consensus 77 ~~~~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~ 116 (122)
T cd01448 77 SNDDTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQ 116 (122)
T ss_pred CCCCEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHH
Confidence 356789999999 4777777777764 554 777888873
No 329
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=26.52 E-value=5.3e+02 Score=28.83 Aligned_cols=121 Identities=19% Similarity=0.227 Sum_probs=64.0
Q ss_pred EEEeecC--ChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHHHHHHhcc--CCcEEEEcCChh
Q 011052 24 MLFSATM--PSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAK--GGKTIVFTQTKR 99 (494)
Q Consensus 24 ll~SATl--p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~--~~~~IVF~~t~~ 99 (494)
+-++||. |.+|.++++.++++-..+.-......+ +. ....+..+.-.+.+.+++..+.+ .+.+.|.|+|-.
T Consensus 592 v~l~~syrSt~eI~efan~~l~d~~~~~p~~rsge~-p~----~i~~~~ne~l~qr~~~ii~~mkk~~~etiaVi~kt~~ 666 (747)
T COG3973 592 VGLIASYRSTAEIDEFANSLLPDRFRIHPLTRSGEK-PA----VIMSVANEELVQRNPDIIPRMKKRGSETIAVICKTDH 666 (747)
T ss_pred hhhhhhhcChHHHHHHHHHhccCCCccchhhcCCCC-ce----eeeccchHHHHHhhHHHHHHHHhcCCCceEEECCcHH
Confidence 3344443 567888888888742222111011111 11 11112222233334444444422 357889999999
Q ss_pred hHHHHHHHHhccCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEecCC
Q 011052 100 DADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYEL 164 (494)
Q Consensus 100 ~~~~l~~~L~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~~~~ 164 (494)
+|..+.+.|+..-. +..-.+.-+.|..+.+-+.| -.+.||-+ ++||.||+
T Consensus 667 d~~~~~d~lre~~~---------~r~I~k~nq~f~~~~~vipv---y~aKGlEF---D~viv~d~ 716 (747)
T COG3973 667 DCKAVMDSLREKDS---------QRTIAKENQRFHHGSDVIPV---YDAKGLEF---DHVIVVDP 716 (747)
T ss_pred HHHHHHHHHhhcch---------hhHHHhhcccccCCceEEEe---eeccccee---eeEEEecc
Confidence 99999999984321 22223333456666544333 34678887 66777765
No 330
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=26.38 E-value=1.6e+02 Score=34.77 Aligned_cols=83 Identities=24% Similarity=0.227 Sum_probs=54.4
Q ss_pred CCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEech----hhhc-cCC----C
Q 011052 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD----VAAR-GLD----I 153 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~----~~~~-GiD----i 153 (494)
+-|+|-.+|+++.|.++++.+.+ ++.|..|.|++.-. +.++. .++|||+|+ ++.| ..+ +
T Consensus 164 ~fKiVYIaPmKALa~Em~~~~~kkl~~~gi~v~ELTGD~ql~-~tei~------~tqiiVTTPEKwDvvTRk~~~d~~l~ 236 (1230)
T KOG0952|consen 164 DFKIVYIAPMKALAAEMVDKFSKKLAPLGISVRELTGDTQLT-KTEIA------DTQIIVTTPEKWDVVTRKSVGDSALF 236 (1230)
T ss_pred CceEEEEechHHHHHHHHHHHhhhcccccceEEEecCcchhh-HHHHH------hcCEEEecccceeeeeeeeccchhhh
Confidence 45888889999999999998875 46789999997543 33333 578999998 2222 221 2
Q ss_pred CcccEEEe-------cCCCCChhhHHHHhcc
Q 011052 154 PNVDLIIH-------YELPNDPETFVHRSGR 177 (494)
Q Consensus 154 p~v~~VI~-------~~~P~~~~~y~qr~GR 177 (494)
..|.+||. -+--..+|+.+-|.=|
T Consensus 237 ~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr 267 (1230)
T KOG0952|consen 237 SLVRLVIIDEVHLLHDDRGPVLETIVARTLR 267 (1230)
T ss_pred hheeeEEeeeehhhcCcccchHHHHHHHHHH
Confidence 34566652 1122346777666554
No 331
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=26.11 E-value=2.7e+02 Score=32.83 Aligned_cols=70 Identities=17% Similarity=0.177 Sum_probs=52.9
Q ss_pred CeeEEEechhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCC--CCc-------e-EEEecChhhHHHHHHHHHHh
Q 011052 137 KFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAG--KEG-------T-AILMFTSSQRRTVRSLERDV 206 (494)
Q Consensus 137 ~~~iLVaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G--~~g-------~-~i~l~~~~e~~~l~~le~~~ 206 (494)
..+.|++-+++..|.|.|+|-.++-..-..+...-.|.+||.-|.- ..| . -.++++..+...++.|.+..
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 6889999999999999999998888888888888899999988742 111 2 22345666666666665554
No 332
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=26.04 E-value=90 Score=24.86 Aligned_cols=36 Identities=14% Similarity=0.197 Sum_probs=25.7
Q ss_pred cCCcEEEEcCC--hhhHHHHHHHHhc-cC-ceeeecCCCC
Q 011052 87 KGGKTIVFTQT--KRDADEVSLALTS-II-ASEALHGDIS 122 (494)
Q Consensus 87 ~~~~~IVF~~t--~~~~~~l~~~L~~-~~-~~~~lhg~~~ 122 (494)
++.+++|||.+ +..+...+..|.. ++ .+..+.|++.
T Consensus 49 ~~~~ivl~c~~G~~~~s~~aa~~L~~~G~~~v~~l~GG~~ 88 (92)
T cd01532 49 RDTPIVVYGEGGGEDLAPRAARRLSELGYTDVALLEGGLQ 88 (92)
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHcCccCEEEccCCHH
Confidence 36789999998 4446677777765 44 4677888864
No 333
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=26.00 E-value=2.4e+02 Score=25.79 Aligned_cols=121 Identities=21% Similarity=0.225 Sum_probs=59.4
Q ss_pred ChHHHHHHHHHhCC-CCCcEEEEeecC-ChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHHHH
Q 011052 5 GFEEDVELILENLP-PKRQSMLFSATM-PSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 82 (494)
Q Consensus 5 GF~~~i~~Il~~lp-~~~q~ll~SATl-p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll 82 (494)
.|-+++..||+.+. ...++.+.|-|- |++.+++.+.+.-...... ......-... ....+.+|...+..+.
T Consensus 45 ~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~~l~i~~~~~~-----~~~~~~~F~~--~eI~~gsK~~Hf~~i~ 117 (169)
T PF12689_consen 45 SLYPDVPEILQELKERGVKLAVASRTDEPDWARELLKLLEIDDADGD-----GVPLIEYFDY--LEIYPGSKTTHFRRIH 117 (169)
T ss_dssp ---TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHHHHTT-C---------------CCECE--EEESSS-HHHHHHHHH
T ss_pred EeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHHHhcCCCccccc-----cccchhhcch--hheecCchHHHHHHHH
Confidence 46788999998886 467888888774 5555555554432200000 0111111122 3333458888888887
Q ss_pred HHhccC-CcEEEEcCChhhHHHHHHHHhccCceeeecCCCCHHHHHHHHccccC
Q 011052 83 TVYAKG-GKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQ 135 (494)
Q Consensus 83 ~~~~~~-~~~IVF~~t~~~~~~l~~~L~~~~~~~~lhg~~~~~~R~~~l~~Fr~ 135 (494)
+...-. ...|.|=.....++.+.. -++.++....||+.+.=++-+++|++
T Consensus 118 ~~tgI~y~eMlFFDDe~~N~~~v~~---lGV~~v~v~~Glt~~~~~~gL~~~~~ 168 (169)
T PF12689_consen 118 RKTGIPYEEMLFFDDESRNIEVVSK---LGVTCVLVPDGLTWDEFERGLEKFRK 168 (169)
T ss_dssp HHH---GGGEEEEES-HHHHHHHHT---TT-EEEE-SSS--HHHHHHHHHHHHH
T ss_pred HhcCCChhHEEEecCchhcceeeEe---cCcEEEEeCCCCCHHHHHHHHHHHhh
Confidence 765332 455666555555544332 25566666679999888888888763
No 334
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=25.20 E-value=2.6e+02 Score=32.66 Aligned_cols=64 Identities=9% Similarity=0.001 Sum_probs=49.1
Q ss_pred HHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechh
Q 011052 76 TILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (494)
Q Consensus 76 ~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~ 146 (494)
.+|..++... .+..+-|.++|.-.|++=++.+.. ++.|.++.+++++.+|..++. ++|+.+|..
T Consensus 112 A~l~a~l~al-~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~i~~~~~~~err~~Y~------~dI~YGT~~ 180 (913)
T PRK13103 112 GTLAVYLNAL-SGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGIVTPFQPPEEKRAAYA------ADITYGTNN 180 (913)
T ss_pred HHHHHHHHHH-cCCCEEEEeCCHHHHHHHHHHHHHHhcccCCEEEEECCCCCHHHHHHHhc------CCEEEEccc
Confidence 3444445444 578899999998777776666653 578899999999999998887 688998874
No 335
>KOG3293 consensus Small nuclear ribonucleoprotein (snRNP) [RNA processing and modification]
Probab=24.90 E-value=1.1e+02 Score=26.14 Aligned_cols=17 Identities=18% Similarity=0.417 Sum_probs=12.0
Q ss_pred eEEecCHHHHHHHHhhc
Q 011052 336 AVFDLPEEIAKELLNKQ 352 (494)
Q Consensus 336 s~~d~~~~~~~~~~~~~ 352 (494)
-++.+|+++..++-+..
T Consensus 67 kylri~d~iid~vkee~ 83 (134)
T KOG3293|consen 67 KYLRIPDEIIDKVKEEC 83 (134)
T ss_pred EEEeccHHHHHHHHHHH
Confidence 47788888877766543
No 336
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=24.84 E-value=77 Score=25.45 Aligned_cols=36 Identities=8% Similarity=0.115 Sum_probs=26.6
Q ss_pred ccCCcEEEEcCChhhHHHHHHHHhc-cCc-eeeecCCC
Q 011052 86 AKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDI 121 (494)
Q Consensus 86 ~~~~~~IVF~~t~~~~~~l~~~L~~-~~~-~~~lhg~~ 121 (494)
.++.+++|||.+-..+...+..|.. ++. +..+.|++
T Consensus 59 ~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~Gg~ 96 (103)
T cd01447 59 AEDKPFVFYCASGWRSALAGKTLQDMGLKPVYNIEGGF 96 (103)
T ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHcChHHhEeecCcH
Confidence 4567999999887777777777775 554 66777775
No 337
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=24.35 E-value=2.4e+02 Score=26.23 Aligned_cols=35 Identities=23% Similarity=0.303 Sum_probs=16.9
Q ss_pred HHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc
Q 011052 76 TILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 110 (494)
Q Consensus 76 ~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~ 110 (494)
+.|..++......+..|++.........+.+.|.+
T Consensus 109 ~~L~~~i~~~~~~~~~il~~~g~~~~~~l~~~L~~ 143 (239)
T cd06578 109 EGLLELLELQDGKGKRILRPRGGRAREDLAEALRE 143 (239)
T ss_pred HHHHHHHHhcCCCCCEEEEEcCcchhHHHHHHHHH
Confidence 33444444432223444444444445567777764
No 338
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=24.22 E-value=82 Score=25.52 Aligned_cols=36 Identities=11% Similarity=0.039 Sum_probs=26.8
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhc-cCc-eeeecCCCC
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDIS 122 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-~~~-~~~lhg~~~ 122 (494)
++.++||||.+-..+...+..|.. ++. +..+.|++.
T Consensus 65 ~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~~~Gg~~ 102 (106)
T cd01519 65 KDKELIFYCKAGVRSKAAAELARSLGYENVGNYPGSWL 102 (106)
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHcCCccceecCCcHH
Confidence 457899999998778788888875 553 666777763
No 339
>cd00188 TOPRIM Topoisomerase-primase domain. This is a nucleotidyl transferase/hydrolase domain found in type IA, type IIA and type IIB topoisomerases, bacterial DnaG-type primases, small primase-like proteins from bacteria and archaea, OLD family nucleases from bacterial and archaea, and bacterial DNA repair proteins of the RecR/M family. This domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases and in strand joining in topoisomerases and, as a general acid in strand cleavage by topisomerases and nucleases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=23.68 E-value=1.7e+02 Score=21.64 Aligned_cols=60 Identities=23% Similarity=0.151 Sum_probs=34.7
Q ss_pred EEEEcCChhhHHHHHHHHhccCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccC
Q 011052 91 TIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGL 151 (494)
Q Consensus 91 ~IVF~~t~~~~~~l~~~L~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~Gi 151 (494)
.+|+|....++..+.........+..+.|.........+...++. ...|++++|.-..|.
T Consensus 2 ~viivEg~~d~~~l~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~-~~~v~i~~D~D~~g~ 61 (83)
T cd00188 2 KLIIVEGPSDALALAQAGGYGGAVVALGGHALNKTRELLKRLLGE-AKEVIIATDADREGE 61 (83)
T ss_pred EEEEEecHHHHHHHHHHcCCCEEEEEEccEEcHHHHHHHHHHhcC-CCEEEEEcCCChhHH
Confidence 477888888887777766544556666665443222222222222 567888887544443
No 340
>PF12614 RRF_GI: Ribosome recycling factor ; InterPro: IPR022253 This family of proteins is found in bacteria and viruses. Proteins in this family are approximately 130 amino acids in length. There are two conserved sequence motifs: LPS and LKR. Overproduction of ribosome recycling factor (RRF) reduces tna operon expression and increases the rate of cleavage of TnaC-tRNA(2)(Pro), relieving the growth inhibition associated with plasmid-mediated tnaC overexpression.
Probab=23.29 E-value=2.6e+02 Score=24.41 Aligned_cols=32 Identities=28% Similarity=0.602 Sum_probs=21.4
Q ss_pred ChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceecC
Q 011052 167 DPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 214 (494)
Q Consensus 167 ~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~ 214 (494)
...+++||+|+. ..+.++.+....++.++++-
T Consensus 8 ~LpSlIHRig~~----------------~~k~~ka~A~q~~CeLKRVR 39 (128)
T PF12614_consen 8 PLPSLIHRIGRE----------------AVKQAKALARQHGCELKRVR 39 (128)
T ss_pred ccHHHHHHhhHH----------------HHHHHHHHHHHhCchHHHHH
Confidence 456899999882 23456667777777766543
No 341
>PLN02160 thiosulfate sulfurtransferase
Probab=23.18 E-value=1.4e+02 Score=25.96 Aligned_cols=37 Identities=11% Similarity=0.002 Sum_probs=29.0
Q ss_pred ccCCcEEEEcCChhhHHHHHHHHhc-cC-ceeeecCCCC
Q 011052 86 AKGGKTIVFTQTKRDADEVSLALTS-II-ASEALHGDIS 122 (494)
Q Consensus 86 ~~~~~~IVF~~t~~~~~~l~~~L~~-~~-~~~~lhg~~~ 122 (494)
.++.++|+||.+=..+...+..|.. ++ .+..+.|++.
T Consensus 79 ~~~~~IivyC~sG~RS~~Aa~~L~~~G~~~v~~l~GG~~ 117 (136)
T PLN02160 79 NPADDILVGCQSGARSLKATTELVAAGYKKVRNKGGGYL 117 (136)
T ss_pred CCCCcEEEECCCcHHHHHHHHHHHHcCCCCeeecCCcHH
Confidence 4567999999998888888888875 55 4667788864
No 342
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=23.14 E-value=2.3e+02 Score=23.39 Aligned_cols=36 Identities=17% Similarity=0.192 Sum_probs=20.2
Q ss_pred cCCcEEEEcC-ChhhH----HHHHHHHh------ccCceeeecCCCC
Q 011052 87 KGGKTIVFTQ-TKRDA----DEVSLALT------SIIASEALHGDIS 122 (494)
Q Consensus 87 ~~~~~IVF~~-t~~~~----~~l~~~L~------~~~~~~~lhg~~~ 122 (494)
++.+++|||. +-..+ ..+.+.+. ....+..+.|++.
T Consensus 61 ~~~~iv~yC~~~~~r~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~~ 107 (113)
T cd01531 61 KKDTVVFHCALSQVRGPSAARKFLRYLDEEDLETSKFEVYVLHGGFN 107 (113)
T ss_pred CCCeEEEEeecCCcchHHHHHHHHHHHHHhccccCCCeEEEEcChHH
Confidence 4568899997 32223 33333332 1345788888864
No 343
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=22.75 E-value=98 Score=25.05 Aligned_cols=35 Identities=17% Similarity=0.270 Sum_probs=26.9
Q ss_pred CCcEEEEcCChhhHHHHHHHHhc-cCc-eeeecCCCC
Q 011052 88 GGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDIS 122 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~-~~~-~~~lhg~~~ 122 (494)
+.+++|+|.+-..+...+..|.. ++. +..|.|++.
T Consensus 65 ~~~vv~~c~~g~~s~~~a~~L~~~G~~~v~~l~GG~~ 101 (105)
T cd01525 65 GKIIVIVSHSHKHAALFAAFLVKCGVPRVCILDGGIN 101 (105)
T ss_pred CCeEEEEeCCCccHHHHHHHHHHcCCCCEEEEeCcHH
Confidence 56899999887778888888875 554 677888863
No 344
>PRK06739 pyruvate kinase; Validated
Probab=22.49 E-value=3.2e+02 Score=28.23 Aligned_cols=32 Identities=13% Similarity=0.098 Sum_probs=24.8
Q ss_pred HHHHHHHHccccCCCeeEEEechhhhccCCCC
Q 011052 123 QHQRERTLNGFRQGKFTVLVATDVAARGLDIP 154 (494)
Q Consensus 123 ~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip 154 (494)
+..|.+++..-+.-...|++||.+++-.+.-|
T Consensus 250 p~~Qk~Ii~~c~~~gkPvIvATqmLeSM~~~p 281 (352)
T PRK06739 250 PLLQKMMIQECNRTNTYVITATQMLQSMVDHS 281 (352)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcchHHhhccCC
Confidence 44566777777777778999999998877654
No 345
>PF15320 RAM: mRNA cap methylation, RNMT-activating mini protein
Probab=22.16 E-value=2.9e+02 Score=22.14 Aligned_cols=12 Identities=8% Similarity=-0.036 Sum_probs=7.2
Q ss_pred eccCCCcCCCCC
Q 011052 362 ITKLPALQDDGP 373 (494)
Q Consensus 362 ~~~LP~~~~~~~ 373 (494)
+..-|++..+-.
T Consensus 25 ~~~~PPIV~~W~ 36 (81)
T PF15320_consen 25 PFPPPPIVEPWN 36 (81)
T ss_pred CCCCCCEecCcc
Confidence 356677776653
No 346
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=22.01 E-value=5.4e+02 Score=29.12 Aligned_cols=16 Identities=6% Similarity=0.007 Sum_probs=7.9
Q ss_pred hhHHHHHhhhhcCcCc
Q 011052 304 ARSVMGFLSDVYPTAA 319 (494)
Q Consensus 304 ~~~i~~~i~~~~~~~~ 319 (494)
|.|..-+|.+++.+..
T Consensus 13 ~ED~K~VvqRVL~L~S 28 (828)
T PF04094_consen 13 PEDFKMVVQRVLNLDS 28 (828)
T ss_pred HHHHHHHHHHHhccch
Confidence 4555555555554433
No 347
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=21.42 E-value=6.2e+02 Score=29.46 Aligned_cols=78 Identities=14% Similarity=0.164 Sum_probs=44.8
Q ss_pred CCcEEEEcCChhhHHHHHHHHhc--------cCceeeecCCCCHHHHHHHHcccc--------CCCeeEEEechhhhccC
Q 011052 88 GGKTIVFTQTKRDADEVSLALTS--------IIASEALHGDISQHQRERTLNGFR--------QGKFTVLVATDVAARGL 151 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~--------~~~~~~lhg~~~~~~R~~~l~~Fr--------~g~~~iLVaT~~~~~Gi 151 (494)
+.-+|||.++-...+++...++. .++-..+-- -+..+=.+++.+|. .|..-+.||---+++|+
T Consensus 561 p~G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~l~vEP-r~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSEGl 639 (945)
T KOG1132|consen 561 PYGLLIFFPSYPVMDKLITFWQNRGLWERMEKVKKLVVEP-RSKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSEGL 639 (945)
T ss_pred ccceEEeccchHHHHHHHHHHHcchHHHHhhcccCceecc-CCccchHHHHHHHHHHhhCccccceEEEEEecccccCCC
Confidence 35599999999877777555542 111111110 01222233333332 23345667778899999
Q ss_pred CCCc--ccEEEecCCCC
Q 011052 152 DIPN--VDLIIHYELPN 166 (494)
Q Consensus 152 Dip~--v~~VI~~~~P~ 166 (494)
|+.+ -+.||-.++|.
T Consensus 640 DFsD~~~RaVI~tGlPy 656 (945)
T KOG1132|consen 640 DFSDDNGRAVIITGLPY 656 (945)
T ss_pred CccccCCceeEEecCCC
Confidence 9964 45788888763
No 348
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=20.99 E-value=2.3e+02 Score=23.48 Aligned_cols=34 Identities=9% Similarity=0.167 Sum_probs=25.0
Q ss_pred CCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCC
Q 011052 88 GGKTIVFTQTKRDADEVSLALTS-IIASEALHGDI 121 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~ 121 (494)
+.++|+||.+-..+...+..|.. ++....+.|++
T Consensus 60 ~~~IVlyC~~G~rS~~aa~~L~~~G~~~v~~~GG~ 94 (104)
T PRK10287 60 NDTVKLYCNAGRQSGQAKEILSEMGYTHAENAGGL 94 (104)
T ss_pred CCeEEEEeCCChHHHHHHHHHHHcCCCeEEecCCH
Confidence 45799999998778888888875 66544556764
No 349
>cd01027 TOPRIM_RNase_M5_like TOPRIM_ RNase M5_like: The topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain found in Ribonuclease M5: (RNase M5) and other small primase-like proteins from bacteria and archaea. RNase M5 catalyzes the maturation of 5S rRNA in low G+C Gram-positive bacteria. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=20.90 E-value=1.9e+02 Score=22.88 Aligned_cols=53 Identities=13% Similarity=0.149 Sum_probs=34.2
Q ss_pred EEEEcCChhhHHHHHHHHhccCceeeecCCCCHHHHHHHHccccCCCeeEEEechhh
Q 011052 91 TIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 147 (494)
Q Consensus 91 ~IVF~~t~~~~~~l~~~L~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~ 147 (494)
.+|.|+.+.++..+.+..-. ..+...+|.....+..+.+.+. ...|+|+||--
T Consensus 3 ~vIiVEG~~D~~~l~~~g~~-~~~i~t~Gt~~~~~~~~~l~~~---~~~VIiltD~D 55 (81)
T cd01027 3 EVIIVEGKNDTESLKKLGIE-AEIIETNGSIINKETIELIKKA---YRGVIILTDPD 55 (81)
T ss_pred eEEEEEchHHHHHHHHhCCC-ccEEEECCCcCCHHHHHHHHHh---CCEEEEEECCC
Confidence 46778888888877766532 3455666655554555555554 45688999843
No 350
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=20.88 E-value=1.4e+02 Score=23.95 Aligned_cols=37 Identities=14% Similarity=0.185 Sum_probs=25.2
Q ss_pred ccCCcEEEEcCChhhHHHHHHH-----Hhc-cC-ceeeecCCCC
Q 011052 86 AKGGKTIVFTQTKRDADEVSLA-----LTS-II-ASEALHGDIS 122 (494)
Q Consensus 86 ~~~~~~IVF~~t~~~~~~l~~~-----L~~-~~-~~~~lhg~~~ 122 (494)
.....+||||.+-......+.. |.. ++ .+..|.|++.
T Consensus 65 ~~~~~iv~yc~~~~~~~~~~~~~~~~~l~~~g~~~v~~l~GG~~ 108 (113)
T PF00581_consen 65 DKDKDIVFYCSSGWRSGSAAAARVAWILKKLGFKNVYILDGGFE 108 (113)
T ss_dssp TTTSEEEEEESSSCHHHHHHHHHHHHHHHHTTTSSEEEETTHHH
T ss_pred cccccceeeeecccccchhHHHHHHHHHHHcCCCCEEEecChHH
Confidence 4556789999766666655554 654 55 7888888864
No 351
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=20.45 E-value=7e+02 Score=23.19 Aligned_cols=72 Identities=11% Similarity=0.024 Sum_probs=37.7
Q ss_pred CceEEEEecCCccccCccchhHHHHHhhhhcCcCccccccEEEeecCCcceeEEecC-HHHHHHHHhhcCCC-----CCc
Q 011052 285 GWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLP-EEIAKELLNKQIPP-----GNT 358 (494)
Q Consensus 285 ~~~t~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~ig~i~~~~~~~~~gs~~d~~-~~~~~~~~~~~~~~-----~~~ 358 (494)
..+.|+|..-. ......+|...+...+++ -.+-|+.+- --.+||+.. ...|++++..+... .+.
T Consensus 9 ~~~kVYVGnL~----~~a~k~eLE~~F~~yG~l-----rsvWvArnP-PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~r 78 (195)
T KOG0107|consen 9 GNTKVYVGNLG----SRATKRELERAFSKYGPL-----RSVWVARNP-PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIR 78 (195)
T ss_pred CCceEEeccCC----CCcchHHHHHHHHhcCcc-----eeEEEeecC-CCceEEeccCcccHHHHHhhcCCccccCceEE
Confidence 35666664221 235688998999888764 444554431 112666652 33455555444332 244
Q ss_pred eEeeccCC
Q 011052 359 ISKITKLP 366 (494)
Q Consensus 359 l~v~~~LP 366 (494)
|+..+..|
T Consensus 79 VE~S~G~~ 86 (195)
T KOG0107|consen 79 VELSTGRP 86 (195)
T ss_pred EEeecCCc
Confidence 55444444
No 352
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=20.34 E-value=2.1e+02 Score=29.89 Aligned_cols=59 Identities=17% Similarity=0.281 Sum_probs=44.6
Q ss_pred CCcEEEE---cCChhhHHHHHHHHhc----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhh
Q 011052 88 GGKTIVF---TQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 147 (494)
Q Consensus 88 ~~~~IVF---~~t~~~~~~l~~~L~~----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~ 147 (494)
+..+||+ +.|-.+....++.|++ .+.+++.|+-++ ...+++.+.|.++.++-+|+||..
T Consensus 264 gr~vIIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tH~vf~-~a~~~l~~~~~~g~i~~iv~TdTi 329 (382)
T PRK06827 264 GKDVLIVDDMIASGGSMIDAAKELKSRGAKKIIVAATFGFFT-NGLEKFDKAYEEGYFDRIIGTNLV 329 (382)
T ss_pred CCEEEEEeCCcCcHHHHHHHHHHHHHcCCCEEEEEEEeecCh-HHHHHHHhhcccCCCCEEEEeCCC
Confidence 4566776 4566666667777764 467889999988 777778888888888889999874
No 353
>KOG3293 consensus Small nuclear ribonucleoprotein (snRNP) [RNA processing and modification]
Probab=20.34 E-value=3.6e+02 Score=23.22 Aligned_cols=7 Identities=43% Similarity=0.847 Sum_probs=3.7
Q ss_pred EEecCHH
Q 011052 337 VFDLPEE 343 (494)
Q Consensus 337 ~~d~~~~ 343 (494)
||-.|+-
T Consensus 53 f~r~pEc 59 (134)
T KOG3293|consen 53 FFRMPEC 59 (134)
T ss_pred eeeccee
Confidence 5555543
Done!