Query 011052
Match_columns 494
No_of_seqs 517 out of 3022
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 19:48:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011052.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011052hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i32_A Heat resistant RNA depe 100.0 9.6E-44 3.3E-48 355.2 28.0 289 61-372 2-291 (300)
2 3eaq_A Heat resistant RNA depe 100.0 1.2E-33 4E-38 268.9 25.2 206 62-268 6-212 (212)
3 2db3_A ATP-dependent RNA helic 100.0 8.3E-33 2.9E-37 290.4 21.9 202 1-206 215-420 (434)
4 3sqw_A ATP-dependent RNA helic 100.0 2.1E-31 7.3E-36 289.6 21.7 214 1-214 187-418 (579)
5 2j0s_A ATP-dependent RNA helic 100.0 3.7E-31 1.3E-35 274.5 20.6 213 1-216 191-405 (410)
6 3i5x_A ATP-dependent RNA helic 100.0 1.4E-30 4.6E-35 281.9 22.3 214 1-214 238-469 (563)
7 2i4i_A ATP-dependent RNA helic 100.0 2.2E-30 7.6E-35 268.8 19.7 205 1-207 187-396 (417)
8 1s2m_A Putative ATP-dependent 100.0 1.2E-29 4E-34 262.1 23.7 210 2-215 176-386 (400)
9 3fht_A ATP-dependent RNA helic 100.0 1.5E-29 5.2E-34 261.6 24.1 215 4-221 184-407 (412)
10 3eiq_A Eukaryotic initiation f 100.0 2.5E-30 8.6E-35 267.9 16.5 211 2-215 196-408 (414)
11 1xti_A Probable ATP-dependent 100.0 5E-29 1.7E-33 256.2 23.8 210 4-215 168-379 (391)
12 3pey_A ATP-dependent RNA helic 100.0 2.8E-28 9.5E-33 250.2 26.7 216 4-222 161-386 (395)
13 1hv8_A Putative ATP-dependent 100.0 6.9E-29 2.4E-33 252.2 21.9 205 2-214 160-365 (367)
14 2hjv_A ATP-dependent RNA helic 100.0 8.7E-29 3E-33 225.3 20.1 156 58-214 6-162 (163)
15 2rb4_A ATP-dependent RNA helic 100.0 8.7E-29 3E-33 227.8 17.3 161 58-219 4-172 (175)
16 3fmp_B ATP-dependent RNA helic 100.0 2.2E-30 7.7E-35 274.9 5.0 213 4-219 251-472 (479)
17 1t5i_A C_terminal domain of A 100.0 2.6E-28 9E-33 224.2 16.8 156 59-215 3-160 (172)
18 2p6n_A ATP-dependent RNA helic 100.0 1.4E-28 4.7E-33 230.1 15.0 166 38-207 8-175 (191)
19 1fuk_A Eukaryotic initiation f 100.0 4.4E-28 1.5E-32 221.0 15.7 156 60-216 2-159 (165)
20 1fuu_A Yeast initiation factor 100.0 1.3E-29 4.4E-34 260.6 4.9 211 2-215 175-387 (394)
21 2jgn_A DBX, DDX3, ATP-dependen 99.9 7.8E-28 2.7E-32 223.8 13.3 153 57-209 15-168 (185)
22 2v1x_A ATP-dependent DNA helic 99.9 5E-27 1.7E-31 255.2 19.3 198 1-202 177-382 (591)
23 2z0m_A 337AA long hypothetical 99.9 8.5E-27 2.9E-31 234.2 18.1 194 2-207 142-335 (337)
24 3fho_A ATP-dependent RNA helic 99.9 2.5E-27 8.4E-32 253.7 10.2 213 4-219 275-496 (508)
25 1oyw_A RECQ helicase, ATP-depe 99.9 3.2E-25 1.1E-29 238.0 22.2 194 2-204 152-353 (523)
26 3oiy_A Reverse gyrase helicase 99.9 4.3E-26 1.5E-30 237.2 14.5 193 1-212 161-383 (414)
27 2yjt_D ATP-dependent RNA helic 99.9 6E-28 2E-32 221.2 0.0 153 61-214 3-157 (170)
28 1tf5_A Preprotein translocase 99.9 1.6E-25 5.4E-30 246.1 6.7 126 68-195 411-546 (844)
29 2xau_A PRE-mRNA-splicing facto 99.9 6E-24 2E-28 237.4 15.5 177 10-196 231-445 (773)
30 4ddu_A Reverse gyrase; topoiso 99.9 9E-24 3.1E-28 243.6 15.4 205 1-224 218-524 (1104)
31 2whx_A Serine protease/ntpase/ 99.9 3.9E-24 1.3E-28 233.3 6.5 179 2-206 289-493 (618)
32 3l9o_A ATP-dependent RNA helic 99.9 1.8E-22 6E-27 233.0 18.8 198 1-202 302-606 (1108)
33 3o8b_A HCV NS3 protease/helica 99.9 6.7E-23 2.3E-27 223.0 12.1 187 1-219 329-543 (666)
34 1yks_A Genome polyprotein [con 99.9 7.3E-24 2.5E-28 222.8 3.2 177 4-206 113-314 (440)
35 2fsf_A Preprotein translocase 99.9 3E-23 1E-27 227.5 7.7 127 67-195 419-584 (853)
36 2p6r_A Afuhel308 helicase; pro 99.9 7.1E-22 2.4E-26 219.3 18.3 186 3-195 152-389 (702)
37 1gku_B Reverse gyrase, TOP-RG; 99.9 3.4E-23 1.2E-27 238.6 7.1 206 6-224 190-487 (1054)
38 4a2p_A RIG-I, retinoic acid in 99.9 1.9E-21 6.7E-26 208.7 20.4 123 73-197 372-511 (556)
39 2zj8_A DNA helicase, putative 99.9 1.6E-21 5.6E-26 217.0 19.7 199 2-213 151-404 (720)
40 2xgj_A ATP-dependent RNA helic 99.9 4E-21 1.4E-25 219.9 22.6 198 1-202 204-508 (1010)
41 2ykg_A Probable ATP-dependent 99.9 1.7E-22 5.8E-27 223.7 9.8 129 72-202 379-524 (696)
42 2va8_A SSO2462, SKI2-type heli 99.9 2.9E-21 1E-25 214.7 19.7 188 3-195 159-409 (715)
43 2d7d_A Uvrabc system protein B 99.9 2.6E-21 9E-26 212.8 19.0 174 19-202 385-564 (661)
44 2wv9_A Flavivirin protease NS2 99.9 9.9E-23 3.4E-27 223.9 6.4 175 6-206 348-548 (673)
45 1nkt_A Preprotein translocase 99.9 2.2E-22 7.5E-27 221.1 7.4 127 68-196 439-619 (922)
46 1c4o_A DNA nucleotide excision 99.9 1.1E-20 3.8E-25 207.9 20.0 176 19-204 379-560 (664)
47 1wp9_A ATP-dependent RNA helic 99.8 7.9E-21 2.7E-25 198.8 15.8 122 73-195 343-476 (494)
48 3tbk_A RIG-I helicase domain; 99.8 2.7E-21 9.2E-26 207.2 12.5 128 73-202 371-515 (555)
49 2jlq_A Serine protease subunit 99.8 2E-21 6.7E-26 204.9 10.7 164 4-193 124-310 (451)
50 2z83_A Helicase/nucleoside tri 99.8 1.2E-22 4E-27 214.7 0.8 102 88-194 190-313 (459)
51 3jux_A Protein translocase sub 99.8 3.7E-21 1.3E-25 207.4 12.0 167 22-195 411-588 (822)
52 2eyq_A TRCF, transcription-rep 99.8 1.2E-20 4.1E-25 218.8 16.9 179 9-194 740-922 (1151)
53 4a4z_A Antiviral helicase SKI2 99.8 4.8E-20 1.6E-24 210.9 20.4 126 75-202 324-502 (997)
54 4a2q_A RIG-I, retinoic acid in 99.8 5.3E-20 1.8E-24 207.1 19.9 123 73-197 613-752 (797)
55 3dmq_A RNA polymerase-associat 99.8 6.2E-20 2.1E-24 209.9 15.9 166 70-236 486-657 (968)
56 3rc3_A ATP-dependent RNA helic 99.8 8.5E-20 2.9E-24 200.3 16.0 191 1-212 251-462 (677)
57 4gl2_A Interferon-induced heli 99.8 3.9E-20 1.3E-24 204.8 12.6 102 88-192 400-516 (699)
58 4a2w_A RIG-I, retinoic acid in 99.8 4.5E-19 1.5E-23 202.4 20.2 122 74-197 614-752 (936)
59 1gm5_A RECG; helicase, replica 99.8 2.5E-20 8.5E-25 207.5 9.3 173 17-195 513-698 (780)
60 2v6i_A RNA helicase; membrane, 99.8 3.2E-20 1.1E-24 194.6 9.4 162 4-191 107-288 (431)
61 4f92_B U5 small nuclear ribonu 99.8 1.5E-18 5E-23 207.3 19.8 188 12-202 1075-1316(1724)
62 2fwr_A DNA repair protein RAD2 99.8 6.7E-20 2.3E-24 193.7 2.8 113 72-189 334-447 (472)
63 2oca_A DAR protein, ATP-depend 99.8 2.9E-18 1E-22 182.9 12.7 184 8-192 240-453 (510)
64 1z5z_A Helicase of the SNF2/RA 99.7 3.2E-18 1.1E-22 168.3 11.0 120 70-189 93-217 (271)
65 4f92_B U5 small nuclear ribonu 99.7 4.9E-18 1.7E-22 202.8 14.6 184 15-202 239-481 (1724)
66 3h1t_A Type I site-specific re 99.7 1.7E-17 5.7E-22 180.4 14.7 101 82-183 433-545 (590)
67 1z63_A Helicase of the SNF2/RA 99.6 1.8E-15 6E-20 160.9 10.4 118 72-189 324-446 (500)
68 1z3i_X Similar to RAD54-like; 99.6 2.1E-14 7.3E-19 157.6 15.7 134 72-205 398-541 (644)
69 3mwy_W Chromo domain-containin 99.5 1E-13 3.5E-18 155.9 15.9 136 72-207 555-699 (800)
70 2w00_A HSDR, R.ECOR124I; ATP-b 99.4 7.6E-13 2.6E-17 151.2 16.4 120 88-209 537-723 (1038)
71 2e29_A ATP-dependent RNA helic 98.8 1E-08 3.4E-13 82.9 7.4 89 267-362 2-91 (92)
72 2ipc_A Preprotein translocase 98.6 8.9E-07 3E-11 97.9 16.2 167 22-195 380-699 (997)
73 2vl7_A XPD; helicase, unknown 98.3 1.6E-06 5.5E-11 92.9 11.5 75 87-166 383-463 (540)
74 2g0c_A ATP-dependent RNA helic 98.0 4.7E-06 1.6E-10 64.9 5.0 61 287-354 1-61 (76)
75 4a15_A XPD helicase, ATP-depen 97.7 0.00029 1E-08 76.6 14.8 104 87-193 447-583 (620)
76 1wrb_A DJVLGB; RNA helicase, D 97.6 4.8E-05 1.7E-09 72.7 4.6 62 1-64 186-251 (253)
77 2db3_A ATP-dependent RNA helic 97.4 0.00033 1.1E-08 72.6 9.6 69 88-160 129-208 (434)
78 3i31_A Heat resistant RNA depe 97.4 0.00026 8.9E-09 54.7 5.9 78 275-372 2-79 (88)
79 3crv_A XPD/RAD3 related DNA he 97.0 0.0047 1.6E-07 66.1 12.8 75 87-166 392-473 (551)
80 3hgt_A HDA1 complex subunit 3; 97.0 0.0057 1.9E-07 60.6 12.1 119 71-194 107-237 (328)
81 1fuu_A Yeast initiation factor 96.6 0.0057 2E-07 61.4 9.0 69 87-160 88-167 (394)
82 3fmp_B ATP-dependent RNA helic 96.3 0.006 2E-07 63.7 7.3 64 275-340 372-445 (479)
83 1oyw_A RECQ helicase, ATP-depe 96.2 0.017 5.9E-07 61.2 10.5 74 87-160 64-144 (523)
84 2v1x_A ATP-dependent DNA helic 96.2 0.017 5.7E-07 62.3 10.4 60 87-146 83-145 (591)
85 3oiy_A Reverse gyrase helicase 96.1 0.011 3.7E-07 60.4 7.8 80 82-161 58-145 (414)
86 1gm5_A RECG; helicase, replica 96.0 0.016 5.4E-07 64.5 9.2 81 81-161 410-496 (780)
87 3tbk_A RIG-I helicase domain; 95.6 0.25 8.6E-06 51.6 16.2 70 88-161 52-133 (555)
88 3fe2_A Probable ATP-dependent 95.6 0.037 1.3E-06 52.0 8.7 70 88-161 102-182 (242)
89 2i4i_A ATP-dependent RNA helic 95.5 0.086 2.9E-06 53.2 11.6 69 89-161 102-181 (417)
90 3eiq_A Eukaryotic initiation f 95.1 0.015 5.1E-07 58.9 4.4 72 87-161 107-189 (414)
91 4ddu_A Reverse gyrase; topoiso 95.0 0.029 9.8E-07 64.9 7.2 90 72-161 104-202 (1104)
92 3sqw_A ATP-dependent RNA helic 94.9 0.00082 2.8E-08 72.3 -5.9 69 89-160 96-180 (579)
93 2j0s_A ATP-dependent RNA helic 94.9 0.26 8.9E-06 49.6 13.3 70 87-160 104-184 (410)
94 3i5x_A ATP-dependent RNA helic 94.8 0.025 8.5E-07 60.2 5.3 69 89-160 147-231 (563)
95 1s2m_A Putative ATP-dependent 94.6 0.021 7.3E-07 57.5 4.2 70 88-161 89-169 (400)
96 3iuy_A Probable ATP-dependent 94.4 0.12 4.3E-06 47.7 8.6 70 87-160 93-172 (228)
97 1wrb_A DJVLGB; RNA helicase, D 94.3 0.3 1E-05 45.9 11.3 68 89-160 101-179 (253)
98 2eyq_A TRCF, transcription-rep 93.9 0.16 5.4E-06 59.0 9.8 79 83-161 647-731 (1151)
99 3ber_A Probable ATP-dependent 93.7 0.26 9E-06 46.4 9.5 69 88-160 111-191 (249)
100 2gxq_A Heat resistant RNA depe 93.5 0.18 6.1E-06 45.6 7.6 70 87-160 71-149 (207)
101 2oxc_A Probable ATP-dependent 93.4 0.2 6.7E-06 46.5 8.0 68 88-160 92-171 (230)
102 1t6n_A Probable ATP-dependent 93.3 0.23 7.9E-06 45.5 8.2 69 89-160 83-163 (220)
103 1vec_A ATP-dependent RNA helic 93.3 0.25 8.6E-06 44.6 8.3 69 88-160 71-151 (206)
104 3ly5_A ATP-dependent RNA helic 92.5 0.32 1.1E-05 46.2 8.2 71 87-161 125-207 (262)
105 1gku_B Reverse gyrase, TOP-RG; 92.1 0.27 9.3E-06 56.5 8.2 73 86-160 97-180 (1054)
106 2pl3_A Probable ATP-dependent 91.7 0.68 2.3E-05 42.8 9.3 54 87-145 96-154 (236)
107 3bor_A Human initiation factor 91.4 1.1 3.8E-05 41.5 10.4 72 87-161 97-179 (237)
108 1qde_A EIF4A, translation init 91.4 0.78 2.7E-05 41.9 9.2 84 72-160 62-160 (224)
109 1q0u_A Bstdead; DEAD protein, 91.2 0.28 9.7E-06 44.9 6.0 69 88-160 72-155 (219)
110 4a2p_A RIG-I, retinoic acid in 90.9 0.42 1.4E-05 50.0 7.7 70 88-161 55-136 (556)
111 1xti_A Probable ATP-dependent 90.1 0.72 2.5E-05 45.8 8.3 71 88-161 76-158 (391)
112 3dkp_A Probable ATP-dependent 89.4 0.25 8.5E-06 46.1 3.9 71 88-161 98-181 (245)
113 4a2q_A RIG-I, retinoic acid in 89.0 0.73 2.5E-05 51.2 8.0 70 88-161 296-377 (797)
114 3fht_A ATP-dependent RNA helic 88.7 0.064 2.2E-06 54.0 -0.8 65 89-160 96-173 (412)
115 2z0m_A 337AA long hypothetical 88.6 1.5 5.3E-05 42.2 9.3 69 87-160 55-134 (337)
116 1wp9_A ATP-dependent RNA helic 88.1 1.7 5.9E-05 43.9 9.6 69 87-160 51-130 (494)
117 1hv8_A Putative ATP-dependent 86.4 3 0.0001 40.6 9.9 69 87-160 73-152 (367)
118 3fmo_B ATP-dependent RNA helic 85.1 1.3 4.6E-05 42.9 6.5 66 89-161 163-241 (300)
119 2fsf_A Preprotein translocase 83.8 1.8 6E-05 48.1 7.2 53 87-145 114-171 (853)
120 4a2w_A RIG-I, retinoic acid in 83.4 1.2 4E-05 50.6 5.9 69 88-160 296-376 (936)
121 3b6e_A Interferon-induced heli 83.3 0.65 2.2E-05 41.9 3.1 55 88-146 82-141 (216)
122 1tf5_A Preprotein translocase 82.7 2.2 7.5E-05 47.3 7.5 53 87-145 123-180 (844)
123 2ykg_A Probable ATP-dependent 81.6 1.8 6.2E-05 46.8 6.4 69 89-161 62-142 (696)
124 1nkt_A Preprotein translocase 78.7 3.8 0.00013 45.7 7.6 58 81-145 146-208 (922)
125 2ipc_A Preprotein translocase 77.7 3.7 0.00013 45.9 7.1 54 87-146 119-177 (997)
126 3pgw_S U1-70K; protein-RNA com 76.3 41 0.0014 34.3 14.3 60 286-354 102-166 (437)
127 2zj8_A DNA helicase, putative 74.7 4.7 0.00016 43.9 7.2 68 87-161 67-144 (720)
128 3l9o_A ATP-dependent RNA helic 74.6 4.7 0.00016 46.5 7.3 68 82-160 221-295 (1108)
129 2l82_A Designed protein OR32; 74.1 31 0.0011 27.8 9.9 55 91-145 5-60 (162)
130 4gl2_A Interferon-induced heli 73.2 1.3 4.6E-05 47.9 2.3 68 89-160 57-141 (699)
131 2oca_A DAR protein, ATP-depend 71.5 5.4 0.00019 41.2 6.4 67 88-161 157-231 (510)
132 3q2s_C Cleavage and polyadenyl 70.2 7.2 0.00025 36.1 6.3 63 285-354 67-134 (229)
133 2p6r_A Afuhel308 helicase; pro 69.9 5.4 0.00019 43.3 6.2 82 73-161 52-144 (702)
134 4a4z_A Antiviral helicase SKI2 67.6 9.5 0.00033 43.4 7.7 65 85-160 79-152 (997)
135 2yjt_D ATP-dependent RNA helic 70.5 1.1 3.9E-05 39.2 0.0 53 277-331 71-127 (170)
136 1h2v_Z 20 kDa nuclear CAP bind 67.0 22 0.00076 30.1 8.5 60 286-354 39-103 (156)
137 2pk2_A Cyclin-T1, protein TAT; 64.8 1.9 6.6E-05 43.1 1.2 9 256-264 192-200 (358)
138 2xgj_A ATP-dependent RNA helic 63.2 13 0.00043 42.5 7.6 67 83-160 124-197 (1010)
139 3pey_A ATP-dependent RNA helic 63.1 17 0.00057 35.5 7.8 67 87-161 74-151 (395)
140 3dmn_A Putative DNA helicase; 62.9 59 0.002 28.2 10.6 113 31-163 8-122 (174)
141 3gk5_A Uncharacterized rhodane 62.6 6.4 0.00022 31.6 3.8 44 79-122 46-90 (108)
142 3o8b_A HCV NS3 protease/helica 61.9 13 0.00044 40.2 7.0 66 87-163 256-326 (666)
143 2va8_A SSO2462, SKI2-type heli 60.4 9.8 0.00033 41.3 5.9 67 87-160 74-150 (715)
144 1rif_A DAR protein, DNA helica 59.2 19 0.00063 33.9 7.0 66 88-160 157-230 (282)
145 3g5j_A Putative ATP/GTP bindin 58.6 11 0.00038 30.9 4.7 41 82-122 82-125 (134)
146 2fwr_A DNA repair protein RAD2 57.7 14 0.00049 37.5 6.4 59 72-145 119-179 (472)
147 1gmx_A GLPE protein; transfera 57.1 13 0.00043 29.6 4.6 44 79-122 49-94 (108)
148 2fz4_A DNA repair protein RAD2 56.7 18 0.0006 33.4 6.2 59 72-145 119-179 (237)
149 3flh_A Uncharacterized protein 52.9 10 0.00034 31.2 3.5 45 78-122 61-108 (124)
150 3hix_A ALR3790 protein; rhodan 52.4 13 0.00045 29.5 4.0 40 83-122 47-88 (106)
151 2jtq_A Phage shock protein E; 51.2 23 0.00079 26.6 5.1 42 79-121 30-75 (85)
152 3fho_A ATP-dependent RNA helic 49.5 29 0.001 35.8 7.2 66 88-161 189-265 (508)
153 1tq1_A AT5G66040, senescence-a 48.7 10 0.00034 31.5 2.8 44 79-122 73-118 (129)
154 3hjh_A Transcription-repair-co 47.6 1.1E+02 0.0039 31.4 11.2 111 65-177 18-147 (483)
155 3iwh_A Rhodanese-like domain p 47.5 10 0.00034 30.3 2.5 38 84-121 52-90 (103)
156 3eme_A Rhodanese-like domain p 46.5 11 0.00036 29.8 2.5 37 85-121 53-90 (103)
157 1c4o_A DNA nucleotide excision 46.0 79 0.0027 34.0 10.1 82 68-151 35-144 (664)
158 3foj_A Uncharacterized protein 45.5 12 0.00039 29.4 2.5 38 85-122 53-91 (100)
159 2pk2_A Cyclin-T1, protein TAT; 41.0 5.7 0.00019 39.6 0.0 7 346-352 239-245 (358)
160 1wv9_A Rhodanese homolog TT165 40.5 23 0.0008 27.2 3.6 36 86-122 52-88 (94)
161 2fsx_A RV0390, COG0607: rhodan 37.3 43 0.0015 28.1 5.1 37 86-122 78-116 (148)
162 1vee_A Proline-rich protein fa 35.7 50 0.0017 27.2 5.2 37 86-122 72-110 (134)
163 2d7d_A Uvrabc system protein B 35.4 2.3E+02 0.0077 30.3 11.6 107 68-176 39-177 (661)
164 2k0z_A Uncharacterized protein 33.2 53 0.0018 26.0 4.8 38 85-122 53-91 (110)
165 3mwy_W Chromo domain-containin 32.5 94 0.0032 34.1 8.1 59 86-145 284-353 (800)
166 2pju_A Propionate catabolism o 31.9 1.4E+02 0.0048 27.3 8.0 133 7-146 25-163 (225)
167 1qxn_A SUD, sulfide dehydrogen 31.5 32 0.0011 28.6 3.3 38 85-122 79-118 (137)
168 2hhg_A Hypothetical protein RP 29.4 35 0.0012 28.1 3.2 37 86-122 84-122 (139)
169 3nhv_A BH2092 protein; alpha-b 28.4 35 0.0012 28.7 3.0 37 86-122 70-109 (144)
170 1vp8_A Hypothetical protein AF 27.5 1.5E+02 0.0052 26.6 7.0 55 89-148 45-109 (201)
171 3ilm_A ALR3790 protein; rhodan 26.8 41 0.0014 28.2 3.1 38 85-122 53-92 (141)
172 3d1p_A Putative thiosulfate su 25.8 44 0.0015 27.6 3.1 36 87-122 90-127 (139)
173 3rot_A ABC sugar transporter, 24.6 4E+02 0.014 24.2 10.2 60 105-164 153-226 (297)
174 1t57_A Conserved protein MTH16 23.4 1.9E+02 0.0067 26.0 6.9 55 89-147 53-115 (206)
175 2v6i_A RNA helicase; membrane, 23.4 34 0.0012 34.5 2.3 35 86-121 29-63 (431)
176 2rb4_A ATP-dependent RNA helic 21.8 38 0.0013 29.1 2.0 10 286-295 102-111 (175)
177 2p6n_A ATP-dependent RNA helic 21.7 34 0.0012 30.3 1.6 25 286-318 122-146 (191)
178 1urh_A 3-mercaptopyruvate sulf 21.4 1.1E+02 0.0038 28.4 5.4 37 86-122 228-266 (280)
179 2dgu_A Heterogeneous nuclear r 21.2 2.7E+02 0.0093 21.0 10.4 69 286-367 11-83 (103)
180 3u5c_h Suppressor protein STM1 21.2 20 0.00069 34.1 0.0 46 366-413 211-256 (273)
181 3iz6_A 40S ribosomal protein S 21.1 92 0.0031 30.0 4.5 65 74-145 61-130 (305)
182 1uar_A Rhodanese; sulfurtransf 21.0 78 0.0027 29.6 4.2 45 77-121 220-269 (285)
183 2q5c_A NTRC family transcripti 20.3 3.3E+02 0.011 23.9 8.1 129 88-227 4-137 (196)
184 1t3k_A Arath CDC25, dual-speci 20.1 71 0.0024 27.0 3.3 46 78-123 75-131 (152)
185 1b34_A Protein (small nuclear 20.0 22 0.00075 29.3 0.0 20 321-343 54-73 (119)
No 1
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=100.00 E-value=9.6e-44 Score=355.22 Aligned_cols=289 Identities=38% Similarity=0.587 Sum_probs=251.6
Q ss_pred ceEEEEEEcCcccHHHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCee
Q 011052 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFT 139 (494)
Q Consensus 61 ~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~ 139 (494)
.++|+++.++...|.+.|.++++.+. +.++||||+|++.++.+++.|.. ++.+..+||+|++.+|+++++.|++|.++
T Consensus 2 ~v~~~~i~~~~~~K~~~L~~ll~~~~-~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~ 80 (300)
T 3i32_A 2 TYEEEAVPAPVRGRLEVLSDLLYVAS-PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVR 80 (300)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHC-CSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCC
T ss_pred ceEEEEEECCHHHHHHHHHHHHHhcC-CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCce
Confidence 36788999999999999999998874 78999999999999999999975 78999999999999999999999999999
Q ss_pred EEEechhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceecCCCCHH
Q 011052 140 VLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVE 219 (494)
Q Consensus 140 iLVaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~p~~~ 219 (494)
|||||+++++|+|+|+|++||||++|++.+.|+||+|||||.|++|.|++|+++.+...++.+++.++.+++.+..|+.+
T Consensus 81 vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~~~~~~~~~~ 160 (300)
T 3i32_A 81 VLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPE 160 (300)
T ss_dssp EEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCCEECCCCCHH
T ss_pred EEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcceEeCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHccCCccchhhhhHHHHHHHhhcCHHHHHHHHHHHcCCCCCCCCcccccCCCCceEEEEecCCcccc
Q 011052 220 DVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSR 299 (494)
Q Consensus 220 ~i~~~~~~~~~~~l~~~~~~~~~~f~~~a~~l~~~~~~~~l~aal~~~~g~~~~~~~rsl~~~~~~~~t~~~~~~~~~~~ 299 (494)
++.+..+..++..+..+..+....|.+.+++++++..++.+++||+++.+... .++++++..++|+|++++.++ .
T Consensus 161 ei~~~~~~~~~~~l~~~~~~~~~~f~~~~~~l~~~~~~e~laaal~~l~~~~~--~~~~l~~~~~~~~~~~~~~g~---~ 235 (300)
T 3i32_A 161 EVLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAALLALLLGGAP--AERSLLTGEEGWRTYKATGPR---L 235 (300)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHTCHHHHHHHHHHHHTCCC--CCBCTTTCCBSCBCEEEECTT---C
T ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCcHHHHHHHHHHHhcCCc--CccccccCCCCcEEEEEecCC---C
Confidence 99999999999999988888899999999999999999999999999998766 678999999999999999887 2
Q ss_pred CccchhHHHHHhhhhcCcCccccccEEEeecCCcceeEEecCHHHHHHHHhhcCCCCCceEeeccCCCcCCCC
Q 011052 300 GFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQDDG 372 (494)
Q Consensus 300 ~~~~~~~i~~~i~~~~~~~~~~ig~i~~~~~~~~~gs~~d~~~~~~~~~~~~~~~~~~~l~v~~~LP~~~~~~ 372 (494)
.. |++|. .|.+. +. +||+|.+.+.+ +|||+|++.++ ...+++++++++||++++++
T Consensus 236 ~~--~~~~~-~i~~~-~~---~ig~i~~~~~~----~~~dvp~~~~~------~~~~~~~~~~~~~p~~~~~~ 291 (300)
T 3i32_A 236 SL--PRLVA-LLKGQ-GL---EVGKVAEAEGG----FYVDLRPEARP------EVAGLRLEPARRVEGLLEIP 291 (300)
T ss_dssp CH--HHHHH-HHHHT-TC---CCCCEEEETTE----EEECBCSSCCC------CCTTCEEEEC----------
T ss_pred CC--cHHHH-HHHhc-CC---eECcEEEeCCE----EEEEeCHHHcC------cCCCcEEEecccCCCCccCC
Confidence 22 99997 55554 33 89999997655 89999999887 34689999999999999875
No 2
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=100.00 E-value=1.2e-33 Score=268.85 Aligned_cols=206 Identities=44% Similarity=0.704 Sum_probs=192.3
Q ss_pred eEEEEEEcCcccHHHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeE
Q 011052 62 IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTV 140 (494)
Q Consensus 62 i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~i 140 (494)
+.+.++.++...|.+.|.+++... +..++||||+|++.++.+++.|.. ++.+..+||+|++.+|.++++.|++|.++|
T Consensus 6 ~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~v 84 (212)
T 3eaq_A 6 YEEEAVPAPVRGRLEVLSDLLYVA-SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRV 84 (212)
T ss_dssp BCCEEEECCTTSHHHHHHHHHHHH-CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCE
T ss_pred eeeeEEeCCHHHHHHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeE
Confidence 456677788889999999999876 468999999999999999999986 789999999999999999999999999999
Q ss_pred EEechhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceecCCCCHHH
Q 011052 141 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVED 220 (494)
Q Consensus 141 LVaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~p~~~~ 220 (494)
||||+++++|+|+|++++||+|++|++++.|+||+|||||.|+.|.|++|+++.+...++.+++.++.+++....|..++
T Consensus 85 lvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~e 164 (212)
T 3eaq_A 85 LVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPEE 164 (212)
T ss_dssp EEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCCEECCCCCHHH
T ss_pred EEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcCeecCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHccCCccchhhhhHHHHHHHhhcCHHHHHHHHHHHc
Q 011052 221 VLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLS 268 (494)
Q Consensus 221 i~~~~~~~~~~~l~~~~~~~~~~f~~~a~~l~~~~~~~~l~aal~~~~ 268 (494)
+.+.....+...+.....+....|.+.+++++++++++.+++|++++.
T Consensus 165 i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~l~~al~~ll 212 (212)
T 3eaq_A 165 VLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAALLALLL 212 (212)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHTTTHHHHHHHHHHTCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcCCHHHHHHHHHhhC
Confidence 999999999999999887777899999999999999999999999873
No 3
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=8.3e-33 Score=290.44 Aligned_cols=202 Identities=35% Similarity=0.590 Sum_probs=179.4
Q ss_pred CCCCChHHHHHHHHHhC--CCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHH
Q 011052 1 MLAVGFEEDVELILENL--PPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTIL 78 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~l--p~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L 78 (494)
|+++||.+++..|+..+ ++++|+++||||+|+++..++..++.++..+.+.. .......+.+.++.+....|...|
T Consensus 215 ~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~--~~~~~~~i~~~~~~~~~~~k~~~l 292 (434)
T 2db3_A 215 MLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGI--VGGACSDVKQTIYEVNKYAKRSKL 292 (434)
T ss_dssp HTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESS--TTCCCTTEEEEEEECCGGGHHHHH
T ss_pred hhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEecc--ccccccccceEEEEeCcHHHHHHH
Confidence 68999999999999985 67899999999999999999999999988876542 233456788888888888898888
Q ss_pred HHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCccc
Q 011052 79 SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (494)
Q Consensus 79 ~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~ 157 (494)
.+++.... .++||||+|++.|+.+++.|.+ ++.+..+||++++.+|++++++|++|+.+|||||+++++|||+|+|+
T Consensus 293 ~~~l~~~~--~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~ 370 (434)
T 2db3_A 293 IEILSEQA--DGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIK 370 (434)
T ss_dssp HHHHHHCC--TTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCC
T ss_pred HHHHHhCC--CCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCC
Confidence 88887753 4599999999999999999986 78999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCChhhHHHHhcccCCCCCCceEEEecChh-hHHHHHHHHHHh
Q 011052 158 LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSS-QRRTVRSLERDV 206 (494)
Q Consensus 158 ~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~-e~~~l~~le~~~ 206 (494)
+|||||+|.+.++|+||+|||||.|+.|.+++|+++. +...++.+.+.+
T Consensus 371 ~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l 420 (434)
T 2db3_A 371 HVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKIL 420 (434)
T ss_dssp EEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999954 555555555554
No 4
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.97 E-value=2.1e-31 Score=289.59 Aligned_cols=214 Identities=27% Similarity=0.420 Sum_probs=179.9
Q ss_pred CCCCChHHHHHHHHHhCC-------CCCcEEEEeecCChHHHHHHHHHcCCCcEEEecc--ccccccccceEEEEEEcCc
Q 011052 1 MLAVGFEEDVELILENLP-------PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVG--NQDEKLAEGIKLYAISTTA 71 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~lp-------~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~--~~~~~~~~~i~~~~~~~~~ 71 (494)
|+++||.++++.|+..++ +++|+++||||+|+.+..++..++.++..+.+.. .........+.+.++....
T Consensus 187 l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 266 (579)
T 3sqw_A 187 LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEK 266 (579)
T ss_dssp HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESS
T ss_pred hhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecc
Confidence 578999999999998764 3789999999999999999999999887665432 2233344556666555543
Q ss_pred c--cHHHHHHHHHH---HhccCCcEEEEcCChhhHHHHHHHHhc----cCceeeecCCCCHHHHHHHHccccCCCeeEEE
Q 011052 72 T--SKRTILSDLIT---VYAKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLV 142 (494)
Q Consensus 72 ~--~k~~~L~~ll~---~~~~~~~~IVF~~t~~~~~~l~~~L~~----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLV 142 (494)
. .+...+..+.. ...+..++||||+|++.|+.+++.|.. ++.+..+||+|++.+|.+++++|++++++|||
T Consensus 267 ~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLV 346 (579)
T 3sqw_A 267 FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILV 346 (579)
T ss_dssp TTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEE
T ss_pred hhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEE
Confidence 2 23333333333 224567999999999999999999984 67899999999999999999999999999999
Q ss_pred echhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceecC
Q 011052 143 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 214 (494)
Q Consensus 143 aT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~ 214 (494)
||+++++|||+|+|++||+|++|.+++.|+||+|||||+|+.|.|++|+.+.|...++.|++.....+....
T Consensus 347 aT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~~~ 418 (579)
T 3sqw_A 347 CTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQE 418 (579)
T ss_dssp ECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCCEEE
T ss_pred EcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHhCCCccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999988876544
No 5
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.97 E-value=3.7e-31 Score=274.47 Aligned_cols=213 Identities=35% Similarity=0.604 Sum_probs=190.8
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCccc-HHHHHH
Q 011052 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATS-KRTILS 79 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~-k~~~L~ 79 (494)
|++++|...+..|+..++++.|+++||||+|+.+.+++..++.+|..+.+. ........+.+++..+.... |.+.|.
T Consensus 191 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~k~~~l~ 268 (410)
T 2j0s_A 191 MLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVK--RDELTLEGIKQFFVAVEREEWKFDTLC 268 (410)
T ss_dssp HTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCC--GGGCSCTTEEEEEEEESSTTHHHHHHH
T ss_pred HHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEec--CccccCCCceEEEEEeCcHHhHHHHHH
Confidence 578899999999999999999999999999999999988899888877543 22334556777776665544 888888
Q ss_pred HHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccE
Q 011052 80 DLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL 158 (494)
Q Consensus 80 ~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~ 158 (494)
.++... ...++||||++++.++.+++.|.. ++.+..+||+|++.+|.+++++|++++.+|||||+++++|+|+|++++
T Consensus 269 ~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~ 347 (410)
T 2j0s_A 269 DLYDTL-TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSL 347 (410)
T ss_dssp HHHHHH-TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEE
T ss_pred HHHHhc-CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCE
Confidence 888776 457999999999999999999986 788999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceecCCC
Q 011052 159 IIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216 (494)
Q Consensus 159 VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~p 216 (494)
||+|++|++.+.|+||+||+||.|++|.|++|+++.+...++.++++++.+++.++..
T Consensus 348 Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 405 (410)
T 2j0s_A 348 IINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMN 405 (410)
T ss_dssp EEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCSC
T ss_pred EEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCceecccc
Confidence 9999999999999999999999999999999999999999999999999998887654
No 6
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.97 E-value=1.4e-30 Score=281.88 Aligned_cols=214 Identities=27% Similarity=0.423 Sum_probs=178.8
Q ss_pred CCCCChHHHHHHHHHhCC-------CCCcEEEEeecCChHHHHHHHHHcCCCcEEEec--cccccccccceEEEEEEcCc
Q 011052 1 MLAVGFEEDVELILENLP-------PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLV--GNQDEKLAEGIKLYAISTTA 71 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~lp-------~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~--~~~~~~~~~~i~~~~~~~~~ 71 (494)
|+++||.++++.|+..++ +++|+++||||+|+.+..++..++.++..+.+. ..........+.+.++....
T Consensus 238 l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (563)
T 3i5x_A 238 LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEK 317 (563)
T ss_dssp HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESS
T ss_pred HhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECch
Confidence 578999999999988763 378999999999999999999999887765443 22223344556666555543
Q ss_pred c-cH-HHHHHHHH---HHhccCCcEEEEcCChhhHHHHHHHHhc----cCceeeecCCCCHHHHHHHHccccCCCeeEEE
Q 011052 72 T-SK-RTILSDLI---TVYAKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLV 142 (494)
Q Consensus 72 ~-~k-~~~L~~ll---~~~~~~~~~IVF~~t~~~~~~l~~~L~~----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLV 142 (494)
. .+ ...+..+. ....+..++||||+|++.|+.+++.|.. ++.+..+||+|++.+|.++++.|++++++|||
T Consensus 318 ~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLv 397 (563)
T 3i5x_A 318 FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILV 397 (563)
T ss_dssp TTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEE
T ss_pred hHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEE
Confidence 2 22 23333333 3324567999999999999999999984 67899999999999999999999999999999
Q ss_pred echhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceecC
Q 011052 143 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 214 (494)
Q Consensus 143 aT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~ 214 (494)
||+++++|||+|+|++||+|++|.+++.|+||+|||||.|+.|.|++|+.+.|...++.|++..+..++...
T Consensus 398 aT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~~~ 469 (563)
T 3i5x_A 398 CTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQE 469 (563)
T ss_dssp ECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCCEEE
T ss_pred EcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHhCCCccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999888776544
No 7
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.97 E-value=2.2e-30 Score=268.78 Aligned_cols=205 Identities=40% Similarity=0.605 Sum_probs=179.9
Q ss_pred CCCCChHHHHHHHHHh--CCC--CCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHH
Q 011052 1 MLAVGFEEDVELILEN--LPP--KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRT 76 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~--lp~--~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~ 76 (494)
|++++|..++..|+.. ++. .+|+++||||+|+.+..++..++.++..+.+.. .......+.+.++.+....|..
T Consensus 187 ~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~ 264 (417)
T 2i4i_A 187 MLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR--VGSTSENITQKVVWVEESDKRS 264 (417)
T ss_dssp HHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC------CCSSEEEEEEECCGGGHHH
T ss_pred hhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCC--CCCCccCceEEEEEeccHhHHH
Confidence 3567899999999985 443 689999999999999999999999887776532 2334567888888888888999
Q ss_pred HHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCc
Q 011052 77 ILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPN 155 (494)
Q Consensus 77 ~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~ 155 (494)
.|.+++.......++||||+|++.++.+++.|.+ ++.+..+||+|++.+|.+++++|++++.+|||||+++++|+|+|+
T Consensus 265 ~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~ 344 (417)
T 2i4i_A 265 FLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISN 344 (417)
T ss_dssp HHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCC
T ss_pred HHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCccc
Confidence 9999988876678999999999999999999986 789999999999999999999999999999999999999999999
Q ss_pred ccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhC
Q 011052 156 VDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVG 207 (494)
Q Consensus 156 v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~ 207 (494)
+++||+|++|.+...|+||+||+||.|+.|.|++|+++.+...++.+++.+.
T Consensus 345 v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~ 396 (417)
T 2i4i_A 345 VKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLV 396 (417)
T ss_dssp EEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHH
T ss_pred CCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999888888877654
No 8
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.97 E-value=1.2e-29 Score=262.09 Aligned_cols=210 Identities=31% Similarity=0.533 Sum_probs=190.6
Q ss_pred CCCChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHHH
Q 011052 2 LAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDL 81 (494)
Q Consensus 2 L~~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~l 81 (494)
++.+|...++.|+..+++..|+++||||+|..+..+...++.+|..+.+.. ......+.+++..+....|...+..+
T Consensus 176 ~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~k~~~l~~~ 252 (400)
T 1s2m_A 176 LSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLME---ELTLKGITQYYAFVEERQKLHCLNTL 252 (400)
T ss_dssp SSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCS---SCBCTTEEEEEEECCGGGHHHHHHHH
T ss_pred hhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEecc---ccccCCceeEEEEechhhHHHHHHHH
Confidence 456788999999999999999999999999999999999999887775542 23456677888888888888888888
Q ss_pred HHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEE
Q 011052 82 ITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII 160 (494)
Q Consensus 82 l~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI 160 (494)
+... ...++||||++++.++.+++.|.. ++.+..+||+|++.+|..+++.|++++.+|||||+++++|+|+|++++||
T Consensus 253 ~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi 331 (400)
T 1s2m_A 253 FSKL-QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVI 331 (400)
T ss_dssp HHHS-CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEE
T ss_pred Hhhc-CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEE
Confidence 8775 567999999999999999999986 78999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceecCC
Q 011052 161 HYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSP 215 (494)
Q Consensus 161 ~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~ 215 (494)
+|++|.+...|+||+||+||.|+.|.|++|+++.|...++.+++.++.+++.++.
T Consensus 332 ~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~ 386 (400)
T 1s2m_A 332 NFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPA 386 (400)
T ss_dssp ESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCS
T ss_pred EeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCcccccc
Confidence 9999999999999999999999999999999999999999999999999887654
No 9
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.97 E-value=1.5e-29 Score=261.59 Aligned_cols=215 Identities=31% Similarity=0.480 Sum_probs=184.0
Q ss_pred CChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCc-ccHHHHHHHHH
Q 011052 4 VGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA-TSKRTILSDLI 82 (494)
Q Consensus 4 ~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~L~~ll 82 (494)
.+|...+..++..++.++|+++||||+|+.+..++..++.++..+.+.. .......+.+.++.+.. ..+...+..++
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 261 (412)
T 3fht_A 184 QGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKR--EEETLDTIKQYYVLCSSRDEKFQALCNLY 261 (412)
T ss_dssp TTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCG--GGSSCTTEEEEEEECSSHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeecc--ccccccCceEEEEEcCChHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999988776542 33345667776666554 46777777777
Q ss_pred HHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEe
Q 011052 83 TVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH 161 (494)
Q Consensus 83 ~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~ 161 (494)
... ...++||||++++.|+.+++.|.. ++.+..+||+|++.+|.++++.|++++.+|||||+++++|+|+|++++||+
T Consensus 262 ~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~ 340 (412)
T 3fht_A 262 GAI-TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVIN 340 (412)
T ss_dssp HHH-SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEE
T ss_pred hhc-CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEE
Confidence 765 458999999999999999999986 788999999999999999999999999999999999999999999999999
Q ss_pred cCCCC------ChhhHHHHhcccCCCCCCceEEEecChhh-HHHHHHHHHHhCCCceecCCCCHHHH
Q 011052 162 YELPN------DPETFVHRSGRTGRAGKEGTAILMFTSSQ-RRTVRSLERDVGCKFEFVSPPVVEDV 221 (494)
Q Consensus 162 ~~~P~------~~~~y~qr~GR~gR~G~~g~~i~l~~~~e-~~~l~~le~~~~~~~~~~~~p~~~~i 221 (494)
|++|. +...|+||+||+||.|+.|.|++++++.+ ...++.+++.++.+++....+..+++
T Consensus 341 ~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 407 (412)
T 3fht_A 341 FDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEI 407 (412)
T ss_dssp SSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC--------
T ss_pred ECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccCCCccHHHH
Confidence 99994 67899999999999999999999998765 78999999999999988876655443
No 10
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.97 E-value=2.5e-30 Score=267.86 Aligned_cols=211 Identities=34% Similarity=0.578 Sum_probs=173.1
Q ss_pred CCCChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcc-cHHHHHHH
Q 011052 2 LAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTAT-SKRTILSD 80 (494)
Q Consensus 2 L~~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~-~k~~~L~~ 80 (494)
++.+|...+..++..++++.|+++||||+|..+..+++.++.++..+.+.. .......+.+.++..... .+...+..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~ 273 (414)
T 3eiq_A 196 LSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKK--EELTLEGIRQFYINVEREEWKLDTLCD 273 (414)
T ss_dssp HHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCC--CCCCTTSCCEEEEECSSSTTHHHHHHH
T ss_pred hccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecC--CccCCCCceEEEEEeChHHhHHHHHHH
Confidence 467899999999999999999999999999999999999999887765432 233345566666665544 48888888
Q ss_pred HHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEE
Q 011052 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (494)
Q Consensus 81 ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~V 159 (494)
++... ...++||||++++.++.+++.|.. ++.+..+||+|++.+|.++++.|++++.+|||||+++++|+|+|++++|
T Consensus 274 ~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~V 352 (414)
T 3eiq_A 274 LYETL-TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLV 352 (414)
T ss_dssp HHHSS-CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCE
T ss_pred HHHhC-CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEE
Confidence 88765 457999999999999999999986 7899999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceecCC
Q 011052 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSP 215 (494)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~ 215 (494)
|+|++|.+...|+||+||+||.|++|.|++|+++.+...++.+++.++..++.++.
T Consensus 353 i~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (414)
T 3eiq_A 353 INYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPL 408 (414)
T ss_dssp EESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEECCC
T ss_pred EEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCccccCh
Confidence 99999999999999999999999999999999999999999999999998887754
No 11
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.97 E-value=5e-29 Score=256.16 Aligned_cols=210 Identities=24% Similarity=0.465 Sum_probs=188.0
Q ss_pred CChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHHHHH
Q 011052 4 VGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 83 (494)
Q Consensus 4 ~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~ 83 (494)
++|...+..++..++...|+++||||+|+.+..++..++.+|..+.+.. ........+.+++..+....|...+..++.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 246 (391)
T 1xti_A 168 LDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDD-ETKLTLHGLQQYYVKLKDNEKNRKLFDLLD 246 (391)
T ss_dssp HHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCC-CCCCCCTTCEEEEEECCGGGHHHHHHHHHH
T ss_pred cchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecC-ccccCcccceEEEEEcCchhHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999988776542 222334567788888888889988888887
Q ss_pred HhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEec
Q 011052 84 VYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY 162 (494)
Q Consensus 84 ~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~~ 162 (494)
.. +..++||||++++.++.+++.|.. ++.+..+||+|++.+|.++++.|++++.+|||||+++++|+|+|++++||+|
T Consensus 247 ~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~ 325 (391)
T 1xti_A 247 VL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNY 325 (391)
T ss_dssp HS-CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEES
T ss_pred hc-CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEe
Confidence 76 568999999999999999999986 7889999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhhHHHHhcccCCCCCCceEEEecChh-hHHHHHHHHHHhCCCceecCC
Q 011052 163 ELPNDPETFVHRSGRTGRAGKEGTAILMFTSS-QRRTVRSLERDVGCKFEFVSP 215 (494)
Q Consensus 163 ~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~-e~~~l~~le~~~~~~~~~~~~ 215 (494)
++|++...|+||+||+||.|+.|.|++++++. +...++.+++.++.+++.++.
T Consensus 326 ~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (391)
T 1xti_A 326 DMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPD 379 (391)
T ss_dssp SCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCS
T ss_pred CCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhhCCc
Confidence 99999999999999999999999999999876 556789999998888877654
No 12
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.96 E-value=2.8e-28 Score=250.23 Aligned_cols=216 Identities=31% Similarity=0.538 Sum_probs=186.2
Q ss_pred CChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCc-ccHHHHHHHHH
Q 011052 4 VGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA-TSKRTILSDLI 82 (494)
Q Consensus 4 ~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~L~~ll 82 (494)
.+|...+..++..++++.|+++||||+|+.+..+++.++.++..+.+.. .......+.+.+..+.. ..+...+..++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 238 (395)
T 3pey_A 161 QGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQT--NEVNVDAIKQLYMDCKNEADKFDVLTELY 238 (395)
T ss_dssp TTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCG--GGCSCTTEEEEEEECSSHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccc--cccccccccEEEEEcCchHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999998888776542 23334556666666543 45677777766
Q ss_pred HHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEe
Q 011052 83 TVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH 161 (494)
Q Consensus 83 ~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~ 161 (494)
... ...++||||++++.|+.+++.|.. ++.+..+||+|++.+|.+++++|++|+.+|||||+++++|+|+|++++||+
T Consensus 239 ~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~ 317 (395)
T 3pey_A 239 GLM-TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVN 317 (395)
T ss_dssp TTT-TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEE
T ss_pred Hhc-cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEE
Confidence 654 568999999999999999999986 788999999999999999999999999999999999999999999999999
Q ss_pred cCCCC------ChhhHHHHhcccCCCCCCceEEEecCh-hhHHHHHHHHHHhC-CCceecCCCCHHHHH
Q 011052 162 YELPN------DPETFVHRSGRTGRAGKEGTAILMFTS-SQRRTVRSLERDVG-CKFEFVSPPVVEDVL 222 (494)
Q Consensus 162 ~~~P~------~~~~y~qr~GR~gR~G~~g~~i~l~~~-~e~~~l~~le~~~~-~~~~~~~~p~~~~i~ 222 (494)
|++|. ++..|+||+||+||.|+.|.+++++.+ .+...++.+++.++ .++..++.+..+++.
T Consensus 318 ~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 386 (395)
T 3pey_A 318 YDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFGDIEMTRVPTDDWDEVE 386 (395)
T ss_dssp SSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTTSCCCEECCSSCHHHHH
T ss_pred cCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhCCceeecCChHHHHHHH
Confidence 99999 999999999999999999999999985 45668889999888 777777776665543
No 13
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.96 E-value=6.9e-29 Score=252.20 Aligned_cols=205 Identities=36% Similarity=0.599 Sum_probs=184.9
Q ss_pred CCCChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHHH
Q 011052 2 LAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDL 81 (494)
Q Consensus 2 L~~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~l 81 (494)
++.+|...+..++..++++.|+++||||+|..+..+++.++.++..+... ....+.+.++.+....+.+.+..+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~ 233 (367)
T 1hv8_A 160 LNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAK------INANIEQSYVEVNENERFEALCRL 233 (367)
T ss_dssp HTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECC------SSSSSEEEEEECCGGGHHHHHHHH
T ss_pred hhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEec------CCCCceEEEEEeChHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999887666432 234567777778888888888777
Q ss_pred HHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEE
Q 011052 82 ITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII 160 (494)
Q Consensus 82 l~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI 160 (494)
+. ....++||||++++.++.+++.|.. ++.+..+||++++.+|.++++.|++++.+|||||+++++|+|+|++++||
T Consensus 234 l~--~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi 311 (367)
T 1hv8_A 234 LK--NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVI 311 (367)
T ss_dssp HC--STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEE
T ss_pred Hh--cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEE
Confidence 75 3567999999999999999999986 78999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceecC
Q 011052 161 HYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 214 (494)
Q Consensus 161 ~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~ 214 (494)
++++|.++.+|+||+||+||.|++|.+++++++.|...++.+++.++.+++.+.
T Consensus 312 ~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 365 (367)
T 1hv8_A 312 NYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIKKLK 365 (367)
T ss_dssp ESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCCCCBC
T ss_pred EecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCCCceec
Confidence 999999999999999999999999999999999999999999999998887653
No 14
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.96 E-value=8.7e-29 Score=225.26 Aligned_cols=156 Identities=34% Similarity=0.609 Sum_probs=146.9
Q ss_pred cccceEEEEEEcCcccHHHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCC
Q 011052 58 LAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQG 136 (494)
Q Consensus 58 ~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g 136 (494)
...+++|+++.++..+|.+.|.+++... +..++||||+|++.++.+++.|.. ++.+..+||+|++.+|..++++|+++
T Consensus 6 ~~~~i~~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g 84 (163)
T 2hjv_A 6 TTRNIEHAVIQVREENKFSLLKDVLMTE-NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRG 84 (163)
T ss_dssp CCCCEEEEEEECCGGGHHHHHHHHHHHH-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred CcccceEEEEECChHHHHHHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 4567899999999999999999999876 567999999999999999999986 78999999999999999999999999
Q ss_pred CeeEEEechhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceecC
Q 011052 137 KFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 214 (494)
Q Consensus 137 ~~~iLVaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~ 214 (494)
+++|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|++|.+++|+++.+...++.+++.++.++++++
T Consensus 85 ~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 162 (163)
T 2hjv_A 85 EYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFEIQKIE 162 (163)
T ss_dssp SCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTSCCEECC
T ss_pred CCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCCCcCccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998887653
No 15
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.96 E-value=8.7e-29 Score=227.83 Aligned_cols=161 Identities=28% Similarity=0.502 Sum_probs=145.0
Q ss_pred cccceEEEEEEcCccc-HHHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccC
Q 011052 58 LAEGIKLYAISTTATS-KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQ 135 (494)
Q Consensus 58 ~~~~i~~~~~~~~~~~-k~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~ 135 (494)
+..+++|+++.++..+ |.+.|..++... +..++||||++++.|+.++..|.. ++.+..+||+|++.+|..+++.|++
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~ 82 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIYGSI-TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRD 82 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHHTTS-CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHT
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 4567899999888765 999998888765 567999999999999999999986 7899999999999999999999999
Q ss_pred CCeeEEEechhhhccCCCCcccEEEecCCC------CChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCC
Q 011052 136 GKFTVLVATDVAARGLDIPNVDLIIHYELP------NDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 209 (494)
Q Consensus 136 g~~~iLVaT~~~~~GiDip~v~~VI~~~~P------~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~ 209 (494)
++++|||||+++++|+|+|++++||+||+| .+.++|+||+||+||.|+.|.+++|+++.+...++.+++.++.+
T Consensus 83 g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~ 162 (175)
T 2rb4_A 83 GKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSS 162 (175)
T ss_dssp TSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTCC
T ss_pred CCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred ceecCCCCHH
Q 011052 210 FEFVSPPVVE 219 (494)
Q Consensus 210 ~~~~~~p~~~ 219 (494)
++.++.+..+
T Consensus 163 ~~~~~~~~~~ 172 (175)
T 2rb4_A 163 IKQLNAEDMD 172 (175)
T ss_dssp CEEECSSCCC
T ss_pred ccccCCchhc
Confidence 9888776544
No 16
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.96 E-value=2.2e-30 Score=274.86 Aligned_cols=213 Identities=31% Similarity=0.476 Sum_probs=44.6
Q ss_pred CChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCc-ccHHHHHHHHH
Q 011052 4 VGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA-TSKRTILSDLI 82 (494)
Q Consensus 4 ~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~L~~ll 82 (494)
.+|...+..|++.++.++|+++||||+|..+..++..++.+|..+.+.. .......+.+.++.+.. ..+...|..++
T Consensus 251 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 328 (479)
T 3fmp_B 251 QGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKR--EEETLDTIKQYYVLCSSRDEKFQALCNLY 328 (479)
T ss_dssp TTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC--------------------------------
T ss_pred CCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccc--cccCcCCceEEEEEeCCHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999988887643 22334556666555543 45667777766
Q ss_pred HHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEe
Q 011052 83 TVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH 161 (494)
Q Consensus 83 ~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~ 161 (494)
... ...++||||+|++.|+.+++.|.. ++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|++++||+
T Consensus 329 ~~~-~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~ 407 (479)
T 3fmp_B 329 GAI-TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVIN 407 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhc-cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEE
Confidence 654 457999999999999999999986 788999999999999999999999999999999999999999999999999
Q ss_pred cCCCC------ChhhHHHHhcccCCCCCCceEEEecChhh-HHHHHHHHHHhCCCceecCCCCHH
Q 011052 162 YELPN------DPETFVHRSGRTGRAGKEGTAILMFTSSQ-RRTVRSLERDVGCKFEFVSPPVVE 219 (494)
Q Consensus 162 ~~~P~------~~~~y~qr~GR~gR~G~~g~~i~l~~~~e-~~~l~~le~~~~~~~~~~~~p~~~ 219 (494)
||+|. +...|+||+|||||.|+.|.|++|+++.+ ...++.+++.++.+++.+.....+
T Consensus 408 ~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~ 472 (479)
T 3fmp_B 408 FDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLD 472 (479)
T ss_dssp -----------------------------------------------------------------
T ss_pred ecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCceECCCccHH
Confidence 99995 66899999999999999999999998765 778888988888777766544433
No 17
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.96 E-value=2.6e-28 Score=224.21 Aligned_cols=156 Identities=23% Similarity=0.451 Sum_probs=143.6
Q ss_pred ccceEEEEEEcCcccHHHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCC
Q 011052 59 AEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGK 137 (494)
Q Consensus 59 ~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~ 137 (494)
..+++|+++.++...|.+.|.++++.. +..++||||++++.++.+++.|.. ++.+..+||+|++.+|..+++.|++++
T Consensus 3 ~~~i~q~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~ 81 (172)
T 1t5i_A 3 LHGLQQYYVKLKDNEKNRKLFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQ 81 (172)
T ss_dssp --CCEEEEEECCGGGHHHHHHHHHHHS-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred cCCeEEEEEECChHHHHHHHHHHHHhC-CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCC
Confidence 457889999999999999999999876 567999999999999999999986 789999999999999999999999999
Q ss_pred eeEEEechhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChh-hHHHHHHHHHHhCCCceecCC
Q 011052 138 FTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSS-QRRTVRSLERDVGCKFEFVSP 215 (494)
Q Consensus 138 ~~iLVaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~-e~~~l~~le~~~~~~~~~~~~ 215 (494)
++|||||+++++|+|+|++++||+||+|++++.|+||+||+||.|+.|.+++|+++. +...++.+++.++.+++.++.
T Consensus 82 ~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 160 (172)
T 1t5i_A 82 RRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPD 160 (172)
T ss_dssp CSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC-
T ss_pred CcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCCh
Confidence 999999999999999999999999999999999999999999999999999999876 567899999999988877643
No 18
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.96 E-value=1.4e-28 Score=230.08 Aligned_cols=166 Identities=27% Similarity=0.405 Sum_probs=131.9
Q ss_pred HHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceee
Q 011052 38 SRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEA 116 (494)
Q Consensus 38 ~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~ 116 (494)
..+||++|..|.+.. ......++.++++.++...|.+.|.+++... ..++||||+|++.++.+++.|.. ++.+..
T Consensus 8 ~~~~~~~p~~i~v~~--~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~--~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~ 83 (191)
T 2p6n_A 8 SSGVDLGTENLYFQS--MGAASLDVIQEVEYVKEEAKMVYLLECLQKT--PPPVLIFAEKKADVDAIHEYLLLKGVEAVA 83 (191)
T ss_dssp ----------------------CCSEEEEEECCGGGHHHHHHHHHTTS--CSCEEEECSCHHHHHHHHHHHHHHTCCEEE
T ss_pred cccccCCCEEEEECC--CCCCCcCceEEEEEcChHHHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHHHHHHcCCcEEE
Confidence 356899999887642 3345678999999999999999998888653 46899999999999999999985 789999
Q ss_pred ecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChh-h
Q 011052 117 LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSS-Q 195 (494)
Q Consensus 117 lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~-e 195 (494)
+||+|++.+|.+++++|++++++|||||+++++|+|+|++++||+||+|++++.|+||+||+||.|++|.+++|+++. +
T Consensus 84 lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~ 163 (191)
T 2p6n_A 84 IHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACD 163 (191)
T ss_dssp ECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSC
T ss_pred EeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999876 6
Q ss_pred HHHHHHHHHHhC
Q 011052 196 RRTVRSLERDVG 207 (494)
Q Consensus 196 ~~~l~~le~~~~ 207 (494)
...++.|++.+.
T Consensus 164 ~~~~~~l~~~l~ 175 (191)
T 2p6n_A 164 ESVLMDLKALLL 175 (191)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 677777776654
No 19
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.95 E-value=4.4e-28 Score=220.96 Aligned_cols=156 Identities=31% Similarity=0.584 Sum_probs=139.4
Q ss_pred cceEEEEEEcCccc-HHHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCC
Q 011052 60 EGIKLYAISTTATS-KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGK 137 (494)
Q Consensus 60 ~~i~~~~~~~~~~~-k~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~ 137 (494)
.+++|+++.++..+ |.+.|.+++... +..++||||+|++.++.+++.|.. ++.+..+||+|++.+|.++++.|++++
T Consensus 2 ~~i~~~~~~~~~~~~K~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 80 (165)
T 1fuk_A 2 EGIKQFYVNVEEEEYKYECLTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGS 80 (165)
T ss_dssp --CEEEEEEEESGGGHHHHHHHHHHHT-TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred CCcEEEEEECCcchhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 35778888887777 999999999876 568999999999999999999986 788999999999999999999999999
Q ss_pred eeEEEechhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceecCCC
Q 011052 138 FTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216 (494)
Q Consensus 138 ~~iLVaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~p 216 (494)
++|||||+++++|+|+|++++||+||+|++++.|+||+||+||.|+.|.+++|+++.+...++.+++.++.+++.++..
T Consensus 81 ~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (165)
T 1fuk_A 81 SRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSD 159 (165)
T ss_dssp CSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECCSC
T ss_pred CEEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCccccCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999888877654
No 20
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.95 E-value=1.3e-29 Score=260.55 Aligned_cols=211 Identities=34% Similarity=0.589 Sum_probs=45.0
Q ss_pred CCCChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcc-cHHHHHHH
Q 011052 2 LAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTAT-SKRTILSD 80 (494)
Q Consensus 2 L~~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~-~k~~~L~~ 80 (494)
++.+|...+..++..+++..|+++||||+|+.+..+...++.+|..+.+.. .......+.++++.+... .+...+..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~ 252 (394)
T 1fuu_A 175 LSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKK--DELTLEGIKQFYVNVEEEEYKYECLTD 252 (394)
T ss_dssp HHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC-----------------------------
T ss_pred hCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecC--ccccCCCceEEEEEcCchhhHHHHHHH
Confidence 356889999999999999999999999999999999999999988776542 222334555555544443 36677777
Q ss_pred HHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEE
Q 011052 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (494)
Q Consensus 81 ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~V 159 (494)
+++.. ...++||||++++.++.+++.|.. ++.+..+||+|++.+|.++++.|++++.+|||||+++++|+|+|++++|
T Consensus 253 ~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~V 331 (394)
T 1fuu_A 253 LYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLV 331 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhcC-CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEE
Confidence 77654 457999999999999999999986 7889999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceecCC
Q 011052 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSP 215 (494)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~ 215 (494)
|+|++|.++..|+||+||+||.|++|.|++++++.+...++.+++.++.+++.++.
T Consensus 332 i~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 387 (394)
T 1fuu_A 332 INYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPS 387 (394)
T ss_dssp --------------------------------------------------------
T ss_pred EEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCcccccCc
Confidence 99999999999999999999999999999999999999999999988887766543
No 21
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.95 E-value=7.8e-28 Score=223.77 Aligned_cols=153 Identities=40% Similarity=0.564 Sum_probs=127.8
Q ss_pred ccccceEEEEEEcCcccHHHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccC
Q 011052 57 KLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQ 135 (494)
Q Consensus 57 ~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~ 135 (494)
....+++++++.++..+|.+.|.+++....+..++||||+|++.++.+++.|.. ++.+..+||+|++.+|.+++++|++
T Consensus 15 ~~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~ 94 (185)
T 2jgn_A 15 STSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS 94 (185)
T ss_dssp -CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHH
T ss_pred CCCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHc
Confidence 446789999999999999999999998876678999999999999999999986 7899999999999999999999999
Q ss_pred CCeeEEEechhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCC
Q 011052 136 GKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 209 (494)
Q Consensus 136 g~~~iLVaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~ 209 (494)
++++|||||+++++|+|+|++++||+||+|+++++|+||+||+||.|++|.+++|+++.+...++.+++.+...
T Consensus 95 g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 168 (185)
T 2jgn_A 95 GKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEA 168 (185)
T ss_dssp TSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHHT
T ss_pred CCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999988888888776543
No 22
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.95 E-value=5e-27 Score=255.18 Aligned_cols=198 Identities=21% Similarity=0.305 Sum_probs=157.7
Q ss_pred CCCCC--hHHHHHH--HHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHH-
Q 011052 1 MLAVG--FEEDVEL--ILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKR- 75 (494)
Q Consensus 1 mL~~G--F~~~i~~--Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~- 75 (494)
|+++| |++++.. ++....++.|+++||||+++.+...+..++..+..+.+... ....++.+.... ....+.
T Consensus 177 is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~---~~r~nl~~~v~~-~~~~~~~ 252 (591)
T 2v1x_A 177 CSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTAS---FNRPNLYYEVRQ-KPSNTED 252 (591)
T ss_dssp GSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECC---CCCTTEEEEEEE-CCSSHHH
T ss_pred ccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecC---CCCcccEEEEEe-CCCcHHH
Confidence 34566 7777655 44444557999999999999998888888876654433321 112334333322 222333
Q ss_pred --HHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCC
Q 011052 76 --TILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLD 152 (494)
Q Consensus 76 --~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiD 152 (494)
+.|..++....++.++||||+|++.|+.+++.|.. ++.+..+||+|++.+|.+++++|++++++|||||+++++|||
T Consensus 253 ~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID 332 (591)
T 2v1x_A 253 FIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGID 332 (591)
T ss_dssp HHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCC
T ss_pred HHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCC
Confidence 33444443333568999999999999999999986 789999999999999999999999999999999999999999
Q ss_pred CCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHH
Q 011052 153 IPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 202 (494)
Q Consensus 153 ip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~l 202 (494)
+|+|++||||++|.+++.|+||+||+||.|.+|.|++|+.+.|...+..+
T Consensus 333 ~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~ 382 (591)
T 2v1x_A 333 KPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSM 382 (591)
T ss_dssp CSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHH
T ss_pred cccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999887766655
No 23
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.94 E-value=8.5e-27 Score=234.20 Aligned_cols=194 Identities=28% Similarity=0.540 Sum_probs=163.3
Q ss_pred CCCChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHHH
Q 011052 2 LAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDL 81 (494)
Q Consensus 2 L~~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~l 81 (494)
++.+|..++..++..++...|+++||||+|+.+.+....++.++..+... .....+.+.++......+.. + ..
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~-~~ 214 (337)
T 2z0m_A 142 FEMGFIDDIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC-----IGLANVEHKFVHVKDDWRSK-V-QA 214 (337)
T ss_dssp HHTTCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS-----GGGGGEEEEEEECSSSSHHH-H-HH
T ss_pred hccccHHHHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc-----cccCCceEEEEEeChHHHHH-H-HH
Confidence 35688999999999999999999999999999999999999888766432 22345666666665543332 2 33
Q ss_pred HHHhccCCcEEEEcCChhhHHHHHHHHhccCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEe
Q 011052 82 ITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH 161 (494)
Q Consensus 82 l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~ 161 (494)
+.. ....++||||++++.++.+++.|. .+..+||+|++.+|.+++++|++++.+|||||+++++|+|+|++++||+
T Consensus 215 ~~~-~~~~~~lvf~~~~~~~~~l~~~l~---~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~ 290 (337)
T 2z0m_A 215 LRE-NKDKGVIVFVRTRNRVAKLVRLFD---NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVIN 290 (337)
T ss_dssp HHT-CCCSSEEEECSCHHHHHHHHTTCT---TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEE
T ss_pred HHh-CCCCcEEEEEcCHHHHHHHHHHhh---hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEE
Confidence 333 356899999999999999998887 5788999999999999999999999999999999999999999999999
Q ss_pred cCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhC
Q 011052 162 YELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVG 207 (494)
Q Consensus 162 ~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~ 207 (494)
|++|.++..|+||+||+||.|+.|.+++++. .|...++.+++.++
T Consensus 291 ~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 291 FDAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVSQ 335 (337)
T ss_dssp SSCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC----
T ss_pred ecCCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHhc
Confidence 9999999999999999999999999999999 88888888876654
No 24
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.94 E-value=2.5e-27 Score=253.69 Aligned_cols=213 Identities=31% Similarity=0.504 Sum_probs=152.9
Q ss_pred CChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEc-CcccHHHHHHHHH
Q 011052 4 VGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAIST-TATSKRTILSDLI 82 (494)
Q Consensus 4 ~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~-~~~~k~~~L~~ll 82 (494)
.+|...+..|+..++++.|++++|||+++.+..+...++.++..+.+... ......+.+.+... ....+...+..++
T Consensus 275 ~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~k~~~l~~ll 352 (508)
T 3fho_A 275 QGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTE--ELSVEGIKQLYMDCQSEEHKYNVLVELY 352 (508)
T ss_dssp --CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCC--C----CCCCEEEEC--CHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccc--cCCcccceEEEEECCchHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999998877765422 22233444444444 3445677777776
Q ss_pred HHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEe
Q 011052 83 TVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH 161 (494)
Q Consensus 83 ~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~ 161 (494)
... ...++||||++++.|+.+++.|.+ ++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+
T Consensus 353 ~~~-~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~ 431 (508)
T 3fho_A 353 GLL-TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVN 431 (508)
T ss_dssp C----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC
T ss_pred Hhc-CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEE
Confidence 654 568999999999999999999986 788999999999999999999999999999999999999999999999999
Q ss_pred cCCC------CChhhHHHHhcccCCCCCCceEEEecCh-hhHHHHHHHHHHhCCCceecCCCCHH
Q 011052 162 YELP------NDPETFVHRSGRTGRAGKEGTAILMFTS-SQRRTVRSLERDVGCKFEFVSPPVVE 219 (494)
Q Consensus 162 ~~~P------~~~~~y~qr~GR~gR~G~~g~~i~l~~~-~e~~~l~~le~~~~~~~~~~~~p~~~ 219 (494)
+++| .++..|+||+||+||.|+.|.|++|+.+ .+...++.+++.++.+++.++....+
T Consensus 432 ~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~ 496 (508)
T 3fho_A 432 YDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPTDDYE 496 (508)
T ss_dssp ----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC--------
T ss_pred ECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCcccCCCccHH
Confidence 9999 7899999999999999999999999984 56678899999998888876654433
No 25
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.93 E-value=3.2e-25 Score=237.98 Aligned_cols=194 Identities=20% Similarity=0.364 Sum_probs=154.8
Q ss_pred CCCC--hHHHHHH---HHHhCCCCCcEEEEeecCChHHHHHHHHHc--CCCcEEEeccccccccccceEEEEEEcCcccH
Q 011052 2 LAVG--FEEDVEL---ILENLPPKRQSMLFSATMPSWVKKLSRKYL--DNPLNIDLVGNQDEKLAEGIKLYAISTTATSK 74 (494)
Q Consensus 2 L~~G--F~~~i~~---Il~~lp~~~q~ll~SATlp~~i~~l~~~~l--~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k 74 (494)
.+.| |+.++.. ++..+| +.|++++|||+++.+...+...+ .+|..+ +.. . ...++.+.. .....+
T Consensus 152 ~~~g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~-~~~--~--~r~~l~~~v--~~~~~~ 223 (523)
T 1oyw_A 152 SQWGHDFRPEYAALGQLRQRFP-TLPFMALTATADDTTRQDIVRLLGLNDPLIQ-ISS--F--DRPNIRYML--MEKFKP 223 (523)
T ss_dssp CTTSSCCCHHHHGGGGHHHHCT-TSCEEEEESCCCHHHHHHHHHHHTCCSCEEE-ECC--C--CCTTEEEEE--EECSSH
T ss_pred CcCCCccHHHHHHHHHHHHhCC-CCCEEEEeCCCCHHHHHHHHHHhCCCCCeEE-eCC--C--CCCceEEEE--EeCCCH
Confidence 3455 6666544 455554 68999999999988766444444 344332 221 1 123343322 233456
Q ss_pred HHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCC
Q 011052 75 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDI 153 (494)
Q Consensus 75 ~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDi 153 (494)
.+.|.+++... ++.++||||+|++.|+.+++.|.. ++.+..+||+|++.+|.+++++|++++.+|||||+++++|||+
T Consensus 224 ~~~l~~~l~~~-~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~ 302 (523)
T 1oyw_A 224 LDQLMRYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINK 302 (523)
T ss_dssp HHHHHHHHHHT-TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCC
T ss_pred HHHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCc
Confidence 66677777654 567999999999999999999986 7899999999999999999999999999999999999999999
Q ss_pred CcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHH
Q 011052 154 PNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLER 204 (494)
Q Consensus 154 p~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~ 204 (494)
|+|++||||++|.+++.|+||+||+||.|.++.|++++++.|...++.+..
T Consensus 303 p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~ 353 (523)
T 1oyw_A 303 PNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLE 353 (523)
T ss_dssp TTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHH
T ss_pred cCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999887776644
No 26
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.93 E-value=4.3e-26 Score=237.16 Aligned_cols=193 Identities=22% Similarity=0.383 Sum_probs=154.6
Q ss_pred CCC-CChHHH-HHHHHHhCC-----------CCCcEEEEeec-CChHHH-HHHHHHcCCCcEEEeccccccccccceEEE
Q 011052 1 MLA-VGFEED-VELILENLP-----------PKRQSMLFSAT-MPSWVK-KLSRKYLDNPLNIDLVGNQDEKLAEGIKLY 65 (494)
Q Consensus 1 mL~-~GF~~~-i~~Il~~lp-----------~~~q~ll~SAT-lp~~i~-~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~ 65 (494)
||+ +||.++ +..|+..+| .+.|+++|||| +|..+. .+.+.++. +.+. .......++.+.
T Consensus 161 ~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~--~~~~~~~~i~~~ 234 (414)
T 3oiy_A 161 LLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVG--RLVSVARNITHV 234 (414)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSS--CCCCCCCSEEEE
T ss_pred HHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcC--ccccccccchhe
Confidence 456 999999 899999887 88999999999 676654 33343433 1111 223345567777
Q ss_pred EEEcCcccHHHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCcee-eecCCCCHHHHHHHHccccCCCeeEEEe
Q 011052 66 AISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASE-ALHGDISQHQRERTLNGFRQGKFTVLVA 143 (494)
Q Consensus 66 ~~~~~~~~k~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~-~lhg~~~~~~R~~~l~~Fr~g~~~iLVa 143 (494)
++.+ ++.+.|..++... +.++||||+|++.|+.+++.|.. ++.+. .+||+ +|+ +++|++|+++||||
T Consensus 235 ~~~~---~~~~~l~~~l~~~--~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vLva 303 (414)
T 3oiy_A 235 RISS---RSKEKLVELLEIF--RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINILIG 303 (414)
T ss_dssp EESS---CCHHHHHHHHHHH--CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEEEE
T ss_pred eecc---CHHHHHHHHHHHc--CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEEEE
Confidence 6655 4566677777764 48999999999999999999986 78888 99995 444 99999999999999
Q ss_pred ----chhhhccCCCCc-ccEEEecCCC--CChhhHHHHhcccCCCC----CCceEEEecChhhHHHHHHHHHHhC--CCc
Q 011052 144 ----TDVAARGLDIPN-VDLIIHYELP--NDPETFVHRSGRTGRAG----KEGTAILMFTSSQRRTVRSLERDVG--CKF 210 (494)
Q Consensus 144 ----T~~~~~GiDip~-v~~VI~~~~P--~~~~~y~qr~GR~gR~G----~~g~~i~l~~~~e~~~l~~le~~~~--~~~ 210 (494)
|+++++|+|+|+ |++||+|++| .++.+|+||+|||||.| ++|.+++|+ .+...++.+++.++ .++
T Consensus 304 t~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~~~~~~ 381 (414)
T 3oiy_A 304 VQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLLLIAEE 381 (414)
T ss_dssp ECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHHHHHCC
T ss_pred ecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhcccccc
Confidence 999999999999 9999999999 99999999999999987 589999999 56677788887776 444
Q ss_pred ee
Q 011052 211 EF 212 (494)
Q Consensus 211 ~~ 212 (494)
+.
T Consensus 382 ~~ 383 (414)
T 3oiy_A 382 EI 383 (414)
T ss_dssp CE
T ss_pred cc
Confidence 43
No 27
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.88 E-value=6e-28 Score=221.25 Aligned_cols=153 Identities=29% Similarity=0.506 Sum_probs=139.6
Q ss_pred ceEEEEEEcCc-ccHHHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCe
Q 011052 61 GIKLYAISTTA-TSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKF 138 (494)
Q Consensus 61 ~i~~~~~~~~~-~~k~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~ 138 (494)
++.|+++.++. ..|.+.|.+++... +..++||||++++.++.+++.|.. ++.+..+||+|++.+|..++++|+++++
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~ 81 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQP-EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 81 (170)
Confidence 46677777777 78999998888764 457999999999999999999986 7889999999999999999999999999
Q ss_pred eEEEechhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceecC
Q 011052 139 TVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 214 (494)
Q Consensus 139 ~iLVaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~ 214 (494)
+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++++++.+...++.+++.++.+++...
T Consensus 82 ~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (170)
T 2yjt_D 82 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARV 157 (170)
Confidence 9999999999999999999999999999999999999999999999999999999999999999988877765543
No 28
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.91 E-value=1.6e-25 Score=246.10 Aligned_cols=126 Identities=21% Similarity=0.260 Sum_probs=111.8
Q ss_pred EcCcccHHHHHHHHHHH-hccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEech
Q 011052 68 STTATSKRTILSDLITV-YAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (494)
Q Consensus 68 ~~~~~~k~~~L~~ll~~-~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~ 145 (494)
.+...+|...|..++.. +..+.++||||+|++.++.|+..|.. ++++.+|||++.+.++..+.++|+.+ .|+||||
T Consensus 411 ~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATd 488 (844)
T 1tf5_A 411 YRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKG--AVTIATN 488 (844)
T ss_dssp ESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTSTT--CEEEEET
T ss_pred EeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCCC--eEEEeCC
Confidence 34556788777776654 34567999999999999999999986 89999999999999988888888876 5999999
Q ss_pred hhhccCCCC--------cccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhh
Q 011052 146 VAARGLDIP--------NVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 195 (494)
Q Consensus 146 ~~~~GiDip--------~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e 195 (494)
+|+||+||+ ++.|||||++|.+.+.|+||+|||||+|++|.+++|++..|
T Consensus 489 mAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD 546 (844)
T 1tf5_A 489 MAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMED 546 (844)
T ss_dssp TSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred ccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHH
Confidence 999999999 78899999999999999999999999999999999998766
No 29
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.90 E-value=6e-24 Score=237.42 Aligned_cols=177 Identities=16% Similarity=0.355 Sum_probs=140.3
Q ss_pred HHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHH-HHHHHHHHh--c
Q 011052 10 VELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRT-ILSDLITVY--A 86 (494)
Q Consensus 10 i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~-~L~~ll~~~--~ 86 (494)
+..|+... ++.|+++||||++.+ .+ ..++.++..+.+... ...++++|...+..++.+ .+..++..+ .
T Consensus 231 l~~l~~~~-~~~~iIl~SAT~~~~--~l-~~~~~~~~vi~v~gr-----~~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~ 301 (773)
T 2xau_A 231 LKQVVKRR-PDLKIIIMSATLDAE--KF-QRYFNDAPLLAVPGR-----TYPVELYYTPEFQRDYLDSAIRTVLQIHATE 301 (773)
T ss_dssp HHHHHHHC-TTCEEEEEESCSCCH--HH-HHHTTSCCEEECCCC-----CCCEEEECCSSCCSCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhC-CCceEEEEeccccHH--HH-HHHhcCCCcccccCc-----ccceEEEEecCCchhHHHHHHHHHHHHHHhc
Confidence 44455444 478999999999743 34 346666665654322 134666666655555443 333443332 2
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhc------------cCceeeecCCCCHHHHHHHHcccc-----CCCeeEEEechhhhc
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTS------------IIASEALHGDISQHQRERTLNGFR-----QGKFTVLVATDVAAR 149 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~------------~~~~~~lhg~~~~~~R~~~l~~Fr-----~g~~~iLVaT~~~~~ 149 (494)
..+++||||+++++++.+++.|.+ .+.+..+||+|++.+|.++++.|+ +|..+|||||+++++
T Consensus 302 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~ 381 (773)
T 2xau_A 302 EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAET 381 (773)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHH
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHh
Confidence 468999999999999999999873 467999999999999999999999 999999999999999
Q ss_pred cCCCCcccEEEecCC------------------CCChhhHHHHhcccCCCCCCceEEEecChhhH
Q 011052 150 GLDIPNVDLIIHYEL------------------PNDPETFVHRSGRTGRAGKEGTAILMFTSSQR 196 (494)
Q Consensus 150 GiDip~v~~VI~~~~------------------P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~ 196 (494)
|||+|+|++||++++ |.+.++|+||+|||||. .+|.|++|+++.+.
T Consensus 382 GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 382 SLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp TCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred CcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 999999999999888 89999999999999999 79999999988764
No 30
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.90 E-value=9e-24 Score=243.64 Aligned_cols=205 Identities=20% Similarity=0.348 Sum_probs=157.5
Q ss_pred CCC-CChHHH-HHHHHHhCC-----------CCCcEEEEeec-CChHHHH-HHHHHcCCCcEEEeccccccccccceEEE
Q 011052 1 MLA-VGFEED-VELILENLP-----------PKRQSMLFSAT-MPSWVKK-LSRKYLDNPLNIDLVGNQDEKLAEGIKLY 65 (494)
Q Consensus 1 mL~-~GF~~~-i~~Il~~lp-----------~~~q~ll~SAT-lp~~i~~-l~~~~l~~p~~i~~~~~~~~~~~~~i~~~ 65 (494)
||+ +||.++ ++.|++.+| .++|+++|||| .|..+.. +.+.++. +.+. .......++.+.
T Consensus 218 ~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~--~~~~~~~~i~~~ 291 (1104)
T 4ddu_A 218 LLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVG--RLVSVARNITHV 291 (1104)
T ss_dssp HHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCC--BCCCCCCCEEEE
T ss_pred hhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEec--cCCCCcCCceeE
Confidence 466 999999 999999888 88999999999 6766553 3333332 2222 223345667777
Q ss_pred EEEcCcccHHHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCcee-eecCCCCHHHHHHHHccccCCCeeEEEe
Q 011052 66 AISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASE-ALHGDISQHQRERTLNGFRQGKFTVLVA 143 (494)
Q Consensus 66 ~~~~~~~~k~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~-~lhg~~~~~~R~~~l~~Fr~g~~~iLVa 143 (494)
++.+ ++...|..++... +.++||||+|++.|+.+++.|.. ++.+. .+||+ |.+ +++|++|+++||||
T Consensus 292 ~~~~---~k~~~L~~ll~~~--~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G~~~VLVa 360 (1104)
T 4ddu_A 292 RISS---RSKEKLVELLEIF--RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGKINILIG 360 (1104)
T ss_dssp EESC---CCHHHHHHHHHHH--CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHTSCSEEEE
T ss_pred EEec---CHHHHHHHHHHhc--CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCCCCCEEEE
Confidence 7665 4666677777764 48999999999999999999986 78898 99993 555 99999999999999
Q ss_pred ----chhhhccCCCCc-ccEEEecCCCC----------------------------------------------------
Q 011052 144 ----TDVAARGLDIPN-VDLIIHYELPN---------------------------------------------------- 166 (494)
Q Consensus 144 ----T~~~~~GiDip~-v~~VI~~~~P~---------------------------------------------------- 166 (494)
|+++++|||+|+ |++|||||+|.
T Consensus 361 tas~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~ 440 (1104)
T 4ddu_A 361 VQAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEK 440 (1104)
T ss_dssp ETTTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHH
T ss_pred ecCCCCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 999999999999 99999999998
Q ss_pred --------------------ChhhHHHHhcccCCCC----CCceEEEecChhhHHHHHHHHHHhC----CCceecCCCCH
Q 011052 167 --------------------DPETFVHRSGRTGRAG----KEGTAILMFTSSQRRTVRSLERDVG----CKFEFVSPPVV 218 (494)
Q Consensus 167 --------------------~~~~y~qr~GR~gR~G----~~g~~i~l~~~~e~~~l~~le~~~~----~~~~~~~~p~~ 218 (494)
|+.+|+||+|||||.+ ..|.+++++ .|...++.|++.+. .++..+.....
T Consensus 441 i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~--~d~~~~~~l~~~~~~~~~~~~~~~~~~~~ 518 (1104)
T 4ddu_A 441 VKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLLLIAEEEIIEEAEANW 518 (1104)
T ss_dssp HHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEEC--CCHHHHHHHHHHHHHHTCCCEEEGGGCCH
T ss_pred HhhccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEE--ecHHHHHHHHHHHhhhcccccccccccCH
Confidence 8889999999999965 356777777 55666777766653 44444444445
Q ss_pred HHHHHH
Q 011052 219 EDVLES 224 (494)
Q Consensus 219 ~~i~~~ 224 (494)
+++++.
T Consensus 519 ~~~~~~ 524 (1104)
T 4ddu_A 519 KELVHE 524 (1104)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 31
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.89 E-value=3.9e-24 Score=233.34 Aligned_cols=179 Identities=15% Similarity=0.175 Sum_probs=141.7
Q ss_pred CCCChHHHHHHHHHhCC-CCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHH
Q 011052 2 LAVGFEEDVELILENLP-PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (494)
Q Consensus 2 L~~GF~~~i~~Il~~lp-~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ 80 (494)
++++|..++..|++.++ +++|+++||||+|..+..++. .++..+.+.... +......++..
T Consensus 289 ~~~~~~~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~~---------------~~~~~~~ll~~ 350 (618)
T 2whx_A 289 TDPCSVAARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIEREI---------------PERSWNTGFDW 350 (618)
T ss_dssp CSHHHHHHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECCC---------------CSSCCSSSCHH
T ss_pred CCccHHHHHHHHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeecccC---------------CHHHHHHHHHH
Confidence 47889999999998886 689999999999987554332 244444332110 11111112222
Q ss_pred HHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEE
Q 011052 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (494)
Q Consensus 81 ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~V 159 (494)
+. . ...++||||+|++.|+.+++.|.+ ++.+..+||+ +|.+++++|++|+.+||||||++++|||+| +++|
T Consensus 351 l~-~--~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~V 422 (618)
T 2whx_A 351 IT-D--YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRV 422 (618)
T ss_dssp HH-H--CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEE
T ss_pred HH-h--CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEE
Confidence 22 2 357999999999999999999986 7899999985 788899999999999999999999999998 8888
Q ss_pred --------------------EecCCCCChhhHHHHhcccCCCC-CCceEEEecC---hhhHHHHHHHHHHh
Q 011052 160 --------------------IHYELPNDPETFVHRSGRTGRAG-KEGTAILMFT---SSQRRTVRSLERDV 206 (494)
Q Consensus 160 --------------------I~~~~P~~~~~y~qr~GR~gR~G-~~g~~i~l~~---~~e~~~l~~le~~~ 206 (494)
|+|++|.+.++|+||+|||||.| .+|.|++|++ +.|...++.+++.+
T Consensus 423 Id~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i 493 (618)
T 2whx_A 423 IDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKM 493 (618)
T ss_dssp EECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHH
T ss_pred EECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHh
Confidence 77888999999999999999997 4899999997 77777888888765
No 32
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.8e-22 Score=232.97 Aligned_cols=198 Identities=22% Similarity=0.309 Sum_probs=146.1
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeecCChH--HHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcc------
Q 011052 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSW--VKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTAT------ 72 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~lp~~~q~ll~SATlp~~--i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~------ 72 (494)
|++++|...++.|+..++++.|+|+||||+|+. +..+...+...|..+...... +..++++++.....
T Consensus 302 l~d~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~r----p~pl~~~~~~~~~~~~~~~v 377 (1108)
T 3l9o_A 302 MRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFR----PTPLQHYLFPAHGDGIYLVV 377 (1108)
T ss_dssp TTSHHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCC----SSCEEEEEEETTSSCCEEEE
T ss_pred ccccchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCC----cccceEEEeecCCcceeeee
Confidence 577899999999999999999999999999874 445666666666655433211 12233333221100
Q ss_pred -------------------------------------------cH---HHHHHHHHHHh--ccCCcEEEEcCChhhHHHH
Q 011052 73 -------------------------------------------SK---RTILSDLITVY--AKGGKTIVFTQTKRDADEV 104 (494)
Q Consensus 73 -------------------------------------------~k---~~~L~~ll~~~--~~~~~~IVF~~t~~~~~~l 104 (494)
.+ ...+..++..+ ....++||||++++.|+.+
T Consensus 378 d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~l 457 (1108)
T 3l9o_A 378 DEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEEL 457 (1108)
T ss_dssp ETTTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHH
T ss_pred ccccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHH
Confidence 00 22333344333 2346999999999999999
Q ss_pred HHHHhc-cCc---------------------------------------eeeecCCCCHHHHHHHHccccCCCeeEEEec
Q 011052 105 SLALTS-IIA---------------------------------------SEALHGDISQHQRERTLNGFRQGKFTVLVAT 144 (494)
Q Consensus 105 ~~~L~~-~~~---------------------------------------~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT 144 (494)
+..|.. .+. +.++||+|++.+|+.+++.|++|.++|||||
T Consensus 458 a~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT 537 (1108)
T 3l9o_A 458 ALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFAT 537 (1108)
T ss_dssp HHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEE
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEEC
Confidence 998863 111 7889999999999999999999999999999
Q ss_pred hhhhccCCCCcccEEEecCCCC--------ChhhHHHHhcccCCCC--CCceEEEecChh-hHHHHHHH
Q 011052 145 DVAARGLDIPNVDLIIHYELPN--------DPETFVHRSGRTGRAG--KEGTAILMFTSS-QRRTVRSL 202 (494)
Q Consensus 145 ~~~~~GiDip~v~~VI~~~~P~--------~~~~y~qr~GR~gR~G--~~g~~i~l~~~~-e~~~l~~l 202 (494)
+++++|||+|++++||+++.|. ++..|+||+|||||.| ..|.|++++.+. +...++.+
T Consensus 538 ~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l 606 (1108)
T 3l9o_A 538 ETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGM 606 (1108)
T ss_dssp SCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHH
T ss_pred cHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHH
Confidence 9999999999999999887644 5667999999999999 689999998765 33444444
No 33
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.88 E-value=6.7e-23 Score=222.96 Aligned_cols=187 Identities=22% Similarity=0.286 Sum_probs=140.4
Q ss_pred CCCCChHHHHHHHHHhCCCCCc--EEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHH
Q 011052 1 MLAVGFEEDVELILENLPPKRQ--SMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTIL 78 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~lp~~~q--~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L 78 (494)
|++++|..++..|++.++...| +++||||+|..+. ...+....+... ....+..+ .....
T Consensus 329 ~l~~~~~~~l~~Il~~l~~~~~~llil~SAT~~~~i~------~~~p~i~~v~~~----~~~~i~~~----~~~~~---- 390 (666)
T 3o8b_A 329 STDSTTILGIGTVLDQAETAGARLVVLATATPPGSVT------VPHPNIEEVALS----NTGEIPFY----GKAIP---- 390 (666)
T ss_dssp CCSHHHHHHHHHHHHHTTTTTCSEEEEEESSCTTCCC------CCCTTEEEEECB----SCSSEEET----TEEEC----
T ss_pred hcCccHHHHHHHHHHhhhhcCCceEEEECCCCCcccc------cCCcceEEEeec----ccchhHHH----Hhhhh----
Confidence 7899999999999999998877 6777999998422 122332222100 01111111 00000
Q ss_pred HHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCccc
Q 011052 79 SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (494)
Q Consensus 79 ~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~ 157 (494)
+. ..+.+++||||+|++.|+.+++.|++ ++.+..+||+|++.+ |+++..+||||||++++|||+| |+
T Consensus 391 ---l~-~~~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~ 458 (666)
T 3o8b_A 391 ---IE-AIRGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FD 458 (666)
T ss_dssp ---GG-GSSSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BS
T ss_pred ---hh-hccCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-Cc
Confidence 11 12568999999999999999999986 789999999999874 4556669999999999999997 99
Q ss_pred EEE----------ecC-----------CCCChhhHHHHhcccCCCCCCceEEEecChhhHHH--H--HHHHHHhCCCcee
Q 011052 158 LII----------HYE-----------LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRT--V--RSLERDVGCKFEF 212 (494)
Q Consensus 158 ~VI----------~~~-----------~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~--l--~~le~~~~~~~~~ 212 (494)
+|| ||| +|.+.++|+||+||||| +++|. ++|+++.|... + +.+++..+..+++
T Consensus 459 ~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~~~l~~~~i~~~~~~~~~~ 536 (666)
T 3o8b_A 459 SVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPSGMFDSSVLCECYDAGCAW 536 (666)
T ss_dssp EEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCSSBCCHHHHHHHHHHHHHT
T ss_pred EEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhcccccHHHHHHHhcCCccc
Confidence 988 677 89999999999999999 99999 99998877654 4 7777777777776
Q ss_pred cCCCCHH
Q 011052 213 VSPPVVE 219 (494)
Q Consensus 213 ~~~p~~~ 219 (494)
...|..+
T Consensus 537 ~~l~~~~ 543 (666)
T 3o8b_A 537 YELTPAE 543 (666)
T ss_dssp SCCCHHH
T ss_pred ccCCchH
Confidence 6666443
No 34
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.88 E-value=7.3e-24 Score=222.77 Aligned_cols=177 Identities=19% Similarity=0.200 Sum_probs=124.0
Q ss_pred CChHHHHHHHHHhC-CCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHHHH
Q 011052 4 VGFEEDVELILENL-PPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 82 (494)
Q Consensus 4 ~GF~~~i~~Il~~l-p~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll 82 (494)
.+|...+..+.+.+ +.++|+++||||+|+.+..++. .+..+..+ ...++...+...+..+.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~----~~~~~~~~--------------~~~~~~~~~~~~~~~l~ 174 (440)
T 1yks_A 113 PASIAARGWAAHRARANESATILMTATPPGTSDEFPH----SNGEIEDV--------------QTDIPSEPWNTGHDWIL 174 (440)
T ss_dssp HHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCC----CSSCEEEE--------------ECCCCSSCCSSSCHHHH
T ss_pred cchHHHHHHHHHHhccCCceEEEEeCCCCchhhhhhh----cCCCeeEe--------------eeccChHHHHHHHHHHH
Confidence 34444444444443 3679999999999877543321 11111111 01111111222222332
Q ss_pred HHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEe
Q 011052 83 TVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH 161 (494)
Q Consensus 83 ~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~ 161 (494)
+ .+.++||||+|++.|+.+++.|+. ++.+..+|| ++|++++++|++|+++|||||+++++|||+| +++||+
T Consensus 175 ~---~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~ 246 (440)
T 1yks_A 175 A---DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLD 246 (440)
T ss_dssp H---CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEE
T ss_pred h---cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEe
Confidence 2 357999999999999999999986 789999999 4688999999999999999999999999999 999986
Q ss_pred -------------------cCCCCChhhHHHHhcccCCC-CCCceEEEec---ChhhHHHHHHHHHHh
Q 011052 162 -------------------YELPNDPETFVHRSGRTGRA-GKEGTAILMF---TSSQRRTVRSLERDV 206 (494)
Q Consensus 162 -------------------~~~P~~~~~y~qr~GR~gR~-G~~g~~i~l~---~~~e~~~l~~le~~~ 206 (494)
|+.|.+.++|+||+||+||. +++|.|++|+ ++.+...++.++..+
T Consensus 247 ~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~ 314 (440)
T 1yks_A 247 CRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASM 314 (440)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred CCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHh
Confidence 89999999999999999998 6899999996 677777777777664
No 35
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.88 E-value=3e-23 Score=227.54 Aligned_cols=127 Identities=25% Similarity=0.252 Sum_probs=113.3
Q ss_pred EEcCcccHHHHHHHHHHH-hccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEec
Q 011052 67 ISTTATSKRTILSDLITV-YAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVAT 144 (494)
Q Consensus 67 ~~~~~~~k~~~L~~ll~~-~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT 144 (494)
+.+....|...|..++.. +..+.++||||+|++.++.|+..|.+ ++++.+|||++.+.++..+.++|+.| .|+|||
T Consensus 419 v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIAT 496 (853)
T 2fsf_A 419 VYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIAT 496 (853)
T ss_dssp EESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEE
T ss_pred EEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEec
Confidence 345556788888777754 34567999999999999999999986 89999999999988998899999988 599999
Q ss_pred hhhhccCCCCc--------------------------------c-----cEEEecCCCCChhhHHHHhcccCCCCCCceE
Q 011052 145 DVAARGLDIPN--------------------------------V-----DLIIHYELPNDPETFVHRSGRTGRAGKEGTA 187 (494)
Q Consensus 145 ~~~~~GiDip~--------------------------------v-----~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~ 187 (494)
|+|+||+||+. | .|||+|+.|.+.+.|+||+|||||+|.+|.+
T Consensus 497 nmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s 576 (853)
T 2fsf_A 497 NMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSS 576 (853)
T ss_dssp SCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEE
T ss_pred ccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeE
Confidence 99999999987 4 6999999999999999999999999999999
Q ss_pred EEecChhh
Q 011052 188 ILMFTSSQ 195 (494)
Q Consensus 188 i~l~~~~e 195 (494)
++|++..|
T Consensus 577 ~~fls~eD 584 (853)
T 2fsf_A 577 RFYLSMED 584 (853)
T ss_dssp EEEEETTS
T ss_pred EEEecccH
Confidence 99998776
No 36
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.87 E-value=7.1e-22 Score=219.32 Aligned_cols=186 Identities=23% Similarity=0.374 Sum_probs=137.0
Q ss_pred CCChHHHHHHHHHhC---CCCCcEEEEeecCChHHHHHHHHHcCCCcEEEecccccccccc----ceEEEEEEcC-----
Q 011052 3 AVGFEEDVELILENL---PPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE----GIKLYAISTT----- 70 (494)
Q Consensus 3 ~~GF~~~i~~Il~~l---p~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~----~i~~~~~~~~----- 70 (494)
+.++...++.|+..+ .++.|+|+||||+|+ ...+++ ++..+ .+..... ...+.. .....+....
T Consensus 152 ~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~-~l~~~-~~~~~~r-~~~l~~~~~~~~~~~~~~~~~~~~~ 227 (702)
T 2p6r_A 152 SEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAE-WLDAD-YYVSDWR-PVPLVEGVLCEGTLELFDGAFSTSR 227 (702)
T ss_dssp CTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHH-HTTCE-EEECCCC-SSCEEEEEECSSEEEEEETTEEEEE
T ss_pred CCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHH-HhCCC-cccCCCC-CccceEEEeeCCeeeccCcchhhhh
Confidence 446777777777665 578999999999986 455554 55432 2221110 000000 0001111110
Q ss_pred cccHHHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhcc-------------------------------CceeeecC
Q 011052 71 ATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-------------------------------IASEALHG 119 (494)
Q Consensus 71 ~~~k~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~~-------------------------------~~~~~lhg 119 (494)
...+.+.+.++ +.+++++||||++++.++.++..|... ..+.++||
T Consensus 228 ~~~~~~~~~~~---~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~ 304 (702)
T 2p6r_A 228 RVKFEELVEEC---VAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHA 304 (702)
T ss_dssp ECCHHHHHHHH---HHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECT
T ss_pred hhhHHHHHHHH---HhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecC
Confidence 00134444443 346789999999999999999988632 25788999
Q ss_pred CCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEe----cC---CCCChhhHHHHhcccCCCC--CCceEEEe
Q 011052 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH----YE---LPNDPETFVHRSGRTGRAG--KEGTAILM 190 (494)
Q Consensus 120 ~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~----~~---~P~~~~~y~qr~GR~gR~G--~~g~~i~l 190 (494)
+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ || .|.+..+|+||+|||||.| ..|.|+++
T Consensus 305 ~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l 384 (702)
T 2p6r_A 305 GLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIII 384 (702)
T ss_dssp TSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEE
T ss_pred CCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEE
Confidence 999999999999999999999999999999999999999999 76 7999999999999999998 58999999
Q ss_pred cChhh
Q 011052 191 FTSSQ 195 (494)
Q Consensus 191 ~~~~e 195 (494)
+++.+
T Consensus 385 ~~~~~ 389 (702)
T 2p6r_A 385 VGKRD 389 (702)
T ss_dssp CCGGG
T ss_pred ecCcc
Confidence 99887
No 37
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.87 E-value=3.4e-23 Score=238.58 Aligned_cols=206 Identities=18% Similarity=0.279 Sum_probs=154.3
Q ss_pred hHHHHHHHHHhC-----------CCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccH
Q 011052 6 FEEDVELILENL-----------PPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSK 74 (494)
Q Consensus 6 F~~~i~~Il~~l-----------p~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k 74 (494)
|..+++.|+..+ +..+|+++||||++.. ..++..++.++..+.+. .......++.+.++ ..+|
T Consensus 190 ~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~--~~~~~~~~i~~~~~---~~~k 263 (1054)
T 1gku_B 190 ASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIG--SSRITVRNVEDVAV---NDES 263 (1054)
T ss_dssp STHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCS--CCEECCCCEEEEEE---SCCC
T ss_pred ccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEcc--CcccCcCCceEEEe---chhH
Confidence 446677777766 4578999999999987 65555555555444432 22233456777665 2456
Q ss_pred HHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhccCceeeecCCCCHHHHHHHHccccCCCeeEEEe----chhhhcc
Q 011052 75 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA----TDVAARG 150 (494)
Q Consensus 75 ~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVa----T~~~~~G 150 (494)
.+.|..++... +.++||||+|++.|+.+++.|...+.+..+||+| .+++++|++|+++|||| |+++++|
T Consensus 264 ~~~L~~ll~~~--~~~~LVF~~t~~~a~~l~~~L~~~~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~rG 336 (1054)
T 1gku_B 264 ISTLSSILEKL--GTGGIIYARTGEEAEEIYESLKNKFRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVRG 336 (1054)
T ss_dssp TTTTHHHHTTS--CSCEEEEESSHHHHHHHHHTTTTSSCEEECTTSS-----SHHHHHHHHTSCSEEEEECC------CC
T ss_pred HHHHHHHHhhc--CCCEEEEEcCHHHHHHHHHHHhhccCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeEec
Confidence 66677777654 5789999999999999999998668999999998 37888999999999999 9999999
Q ss_pred CCCCcc-cEEEecCCC----------------------------------------------------------------
Q 011052 151 LDIPNV-DLIIHYELP---------------------------------------------------------------- 165 (494)
Q Consensus 151 iDip~v-~~VI~~~~P---------------------------------------------------------------- 165 (494)
||+|+| ++|||||+|
T Consensus 337 IDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 416 (1054)
T 1gku_B 337 LDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVV 416 (1054)
T ss_dssp SCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEE
T ss_pred cccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeE
Confidence 999996 999999999
Q ss_pred -------CChhhHHHHhcccCCCCCCc--eEEEecChhhHHHHHHHHHHhC---CCceecCCCCHHHHHHH
Q 011052 166 -------NDPETFVHRSGRTGRAGKEG--TAILMFTSSQRRTVRSLERDVG---CKFEFVSPPVVEDVLES 224 (494)
Q Consensus 166 -------~~~~~y~qr~GR~gR~G~~g--~~i~l~~~~e~~~l~~le~~~~---~~~~~~~~p~~~~i~~~ 224 (494)
.+.++|+||+|||||.|..| .+++++...+...++.|++.++ .++.....+..+++++.
T Consensus 417 ~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~ 487 (1054)
T 1gku_B 417 REGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKLYDIEFKSIDEVDFEKLSRE 487 (1054)
T ss_dssp ETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHTTSSCCCBCSCCCHHHHHHH
T ss_pred eecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhhccCccccCCcCCHHHHHHh
Confidence 78999999999999987665 3666666667778888887776 45555556666666654
No 38
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.87 E-value=1.9e-21 Score=208.69 Aligned_cols=123 Identities=20% Similarity=0.338 Sum_probs=66.5
Q ss_pred cHHHHHHHHHHHh---ccCCcEEEEcCChhhHHHHHHHHhcc-------------CceeeecCCCCHHHHHHHHccccC-
Q 011052 73 SKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTSI-------------IASEALHGDISQHQRERTLNGFRQ- 135 (494)
Q Consensus 73 ~k~~~L~~ll~~~---~~~~~~IVF~~t~~~~~~l~~~L~~~-------------~~~~~lhg~~~~~~R~~~l~~Fr~- 135 (494)
.|...|..++... .++.++||||++++.++.+++.|... .....+||+|++.+|.+++++|++
T Consensus 372 ~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~ 451 (556)
T 4a2p_A 372 PKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTS 451 (556)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC----------------------------
T ss_pred hHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhccc
Confidence 3555566666543 45689999999999999999999742 234456788999999999999999
Q ss_pred CCeeEEEechhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHH
Q 011052 136 GKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRR 197 (494)
Q Consensus 136 g~~~iLVaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~ 197 (494)
|+++|||||+++++|||+|+|++||+||+|+++..|+||+|| ||. +.|.+++|+++.+..
T Consensus 452 g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~ 511 (556)
T 4a2p_A 452 KDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 511 (556)
T ss_dssp --CCEEEEEC-----------CEEEEETCCSCHHHHHHC----------CCEEEEESCHHHH
T ss_pred CceEEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcchH
Confidence 999999999999999999999999999999999999999999 999 799999999887654
No 39
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.87 E-value=1.6e-21 Score=216.98 Aligned_cols=199 Identities=22% Similarity=0.243 Sum_probs=145.7
Q ss_pred CCCChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEE------EcC-----
Q 011052 2 LAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAI------STT----- 70 (494)
Q Consensus 2 L~~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~------~~~----- 70 (494)
.+.++...++.|+..++.+.|+|+||||+|+ ...+++ |+..+ .+... ... ..+...+. ...
T Consensus 151 ~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n-~~~~~~-~l~~~-~~~~~---~rp--~~l~~~~~~~~~~~~~~~~~~~ 222 (720)
T 2zj8_A 151 GSRDRGATLEVILAHMLGKAQIIGLSATIGN-PEELAE-WLNAE-LIVSD---WRP--VKLRRGVFYQGFVTWEDGSIDR 222 (720)
T ss_dssp GCTTTHHHHHHHHHHHBTTBEEEEEECCCSC-HHHHHH-HTTEE-EEECC---CCS--SEEEEEEEETTEEEETTSCEEE
T ss_pred CCCcccHHHHHHHHHhhcCCeEEEEcCCcCC-HHHHHH-HhCCc-ccCCC---CCC--CcceEEEEeCCeeeccccchhh
Confidence 3457788899999988778999999999986 355554 44421 12111 000 01111111 111
Q ss_pred cccHHHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhcc----------------------------------Cceee
Q 011052 71 ATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI----------------------------------IASEA 116 (494)
Q Consensus 71 ~~~k~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~~----------------------------------~~~~~ 116 (494)
...+.+.+.++ +.+++++||||+|++.|+.++..|.+. ..+.+
T Consensus 223 ~~~~~~~~~~~---~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~ 299 (720)
T 2zj8_A 223 FSSWEELVYDA---IRKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAF 299 (720)
T ss_dssp CSSTTHHHHHH---HHTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEE
T ss_pred hhHHHHHHHHH---HhCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeee
Confidence 12333444443 345689999999999999999988642 13889
Q ss_pred ecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEe----cC----CCCChhhHHHHhcccCCCC--CCce
Q 011052 117 LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH----YE----LPNDPETFVHRSGRTGRAG--KEGT 186 (494)
Q Consensus 117 lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~----~~----~P~~~~~y~qr~GR~gR~G--~~g~ 186 (494)
+|++|++.+|..+++.|++|.++|||||+++++|||+|++++||+ || .|.+..+|+||+|||||.| ..|.
T Consensus 300 ~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~ 379 (720)
T 2zj8_A 300 HHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGE 379 (720)
T ss_dssp ECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEE
T ss_pred ecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCce
Confidence 999999999999999999999999999999999999999999998 77 5899999999999999988 5799
Q ss_pred EEEecChhhHHHHHHHHHHhCCCceec
Q 011052 187 AILMFTSSQRRTVRSLERDVGCKFEFV 213 (494)
Q Consensus 187 ~i~l~~~~e~~~l~~le~~~~~~~~~~ 213 (494)
|++++++.+. ...+++.+..+++.+
T Consensus 380 ~~~l~~~~~~--~~~~~~~~~~~~~~i 404 (720)
T 2zj8_A 380 GIIVSTSDDP--REVMNHYIFGKPEKL 404 (720)
T ss_dssp EEEECSSSCH--HHHHHHHTTSCCCCC
T ss_pred EEEEecCccH--HHHHHHHhcCCCCCc
Confidence 9999998772 223445554444443
No 40
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.87 E-value=4e-21 Score=219.90 Aligned_cols=198 Identities=22% Similarity=0.322 Sum_probs=146.4
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeecCChHHH--HHHHHHcCCCcEEEeccccccccccceEEEEEEcC--------
Q 011052 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVK--KLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTT-------- 70 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~--~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~-------- 70 (494)
|+++++...++.++..+|++.|+|+||||+|+... .........+..+...... +..++++++...
T Consensus 204 l~d~~rg~~~e~il~~l~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~r----p~pl~~~~~~~~~~~~~~~~ 279 (1010)
T 2xgj_A 204 MRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFR----PTPLQHYLFPAHGDGIYLVV 279 (1010)
T ss_dssp GGCTTTHHHHHHHHHHSCTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCC----SSCEEEEEEETTSSCCEEEE
T ss_pred hcccchhHHHHHHHHhcCCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCC----cccceEEEEecCCcceeeee
Confidence 45677888899999999999999999999987532 3333333445544332111 122444433211
Q ss_pred -ccc-----------------------------------H--------HHHHHHHHHHh--ccCCcEEEEcCChhhHHHH
Q 011052 71 -ATS-----------------------------------K--------RTILSDLITVY--AKGGKTIVFTQTKRDADEV 104 (494)
Q Consensus 71 -~~~-----------------------------------k--------~~~L~~ll~~~--~~~~~~IVF~~t~~~~~~l 104 (494)
... | ...+..++..+ ....++||||+|+..|+.+
T Consensus 280 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~l 359 (1010)
T 2xgj_A 280 DEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEEL 359 (1010)
T ss_dssp CTTCCBCHHHHHHHHHTCC------------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHH
T ss_pred ccccccchHHHHHHHHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHH
Confidence 000 1 12233333332 1345899999999999999
Q ss_pred HHHHhc-cC---------------------------------------ceeeecCCCCHHHHHHHHccccCCCeeEEEec
Q 011052 105 SLALTS-II---------------------------------------ASEALHGDISQHQRERTLNGFRQGKFTVLVAT 144 (494)
Q Consensus 105 ~~~L~~-~~---------------------------------------~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT 144 (494)
+..|.. .+ .+..+||+|++.+|+.+++.|++|.++|||||
T Consensus 360 a~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT 439 (1010)
T 2xgj_A 360 ALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFAT 439 (1010)
T ss_dssp HHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEE
T ss_pred HHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEe
Confidence 998864 21 27789999999999999999999999999999
Q ss_pred hhhhccCCCCcccEEEe----cCC----CCChhhHHHHhcccCCCCC--CceEEEecChh-hHHHHHHH
Q 011052 145 DVAARGLDIPNVDLIIH----YEL----PNDPETFVHRSGRTGRAGK--EGTAILMFTSS-QRRTVRSL 202 (494)
Q Consensus 145 ~~~~~GiDip~v~~VI~----~~~----P~~~~~y~qr~GR~gR~G~--~g~~i~l~~~~-e~~~l~~l 202 (494)
+++++|||+|++++||+ ||. |.++..|+||+|||||.|. .|.|++++++. +...++.+
T Consensus 440 ~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l 508 (1010)
T 2xgj_A 440 ETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGM 508 (1010)
T ss_dssp GGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHH
T ss_pred hHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHH
Confidence 99999999999999999 999 8999999999999999995 59999999865 55455554
No 41
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.86 E-value=1.7e-22 Score=223.69 Aligned_cols=129 Identities=22% Similarity=0.364 Sum_probs=81.5
Q ss_pred ccHHHHHHHHHHHh---ccCCcEEEEcCChhhHHHHHHHHhc-c----Cceeee--------cCCCCHHHHHHHHccccC
Q 011052 72 TSKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS-I----IASEAL--------HGDISQHQRERTLNGFRQ 135 (494)
Q Consensus 72 ~~k~~~L~~ll~~~---~~~~~~IVF~~t~~~~~~l~~~L~~-~----~~~~~l--------hg~~~~~~R~~~l~~Fr~ 135 (494)
..|.+.|..++... .++.++||||++++.|+.+++.|.. + +.+..+ |++|++.+|.+++++|++
T Consensus 379 ~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~ 458 (696)
T 2ykg_A 379 NPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKA 458 (696)
T ss_dssp CHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC---------------------------
T ss_pred CHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHh
Confidence 45777777777665 2567999999999999999999986 3 788888 559999999999999998
Q ss_pred -CCeeEEEechhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHH
Q 011052 136 -GKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 202 (494)
Q Consensus 136 -g~~~iLVaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~l 202 (494)
|+++|||||+++++|||+|+|++||+||+|+++++|+||+|| ||. +.|.++++++..+......+
T Consensus 459 ~g~~~vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~~ 524 (696)
T 2ykg_A 459 SGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQI 524 (696)
T ss_dssp --CCSCSEEEESSCCC---CCCSEEEEESCC--CCCC-----------CCCEEEEEESCHHHHHHHHH
T ss_pred cCCccEEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999 998 78999999998776554444
No 42
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.86 E-value=2.9e-21 Score=214.75 Aligned_cols=188 Identities=23% Similarity=0.368 Sum_probs=133.3
Q ss_pred CCChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccce--------EEEEEEcCc---
Q 011052 3 AVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGI--------KLYAISTTA--- 71 (494)
Q Consensus 3 ~~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i--------~~~~~~~~~--- 71 (494)
+.+|...++.|+..++ +.|+|+||||+++ ...+++ |+..+ .+..... ...+...+ .........
T Consensus 159 ~~~~~~~l~~i~~~~~-~~~ii~lSATl~n-~~~~~~-~l~~~-~~~~~~r-~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 233 (715)
T 2va8_A 159 DPERGPVVESVTIRAK-RRNLLALSATISN-YKQIAK-WLGAE-PVATNWR-PVPLIEGVIYPERKKKEYNVIFKDNTTK 233 (715)
T ss_dssp CTTTHHHHHHHHHHHH-TSEEEEEESCCTT-HHHHHH-HHTCE-EEECCCC-SSCEEEEEEEECSSTTEEEEEETTSCEE
T ss_pred CcccchHHHHHHHhcc-cCcEEEEcCCCCC-HHHHHH-HhCCC-ccCCCCC-CCCceEEEEecCCcccceeeecCcchhh
Confidence 4567788888888887 8999999999986 355555 44422 1211100 00000000 000111110
Q ss_pred --ccHHHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhcc-------------------------------------C
Q 011052 72 --TSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-------------------------------------I 112 (494)
Q Consensus 72 --~~k~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~~-------------------------------------~ 112 (494)
......+..+.+.+.+++++||||++++.++.++..|.+. .
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~ 313 (715)
T 2va8_A 234 KVHGDDAIIAYTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISK 313 (715)
T ss_dssp EEESSSHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTT
T ss_pred hcccchHHHHHHHHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhc
Confidence 0011223333444456789999999999999999998742 2
Q ss_pred ceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEe----cC-------CCCChhhHHHHhcccCCC
Q 011052 113 ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH----YE-------LPNDPETFVHRSGRTGRA 181 (494)
Q Consensus 113 ~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~----~~-------~P~~~~~y~qr~GR~gR~ 181 (494)
.+.++||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ || .|.+..+|+||+|||||.
T Consensus 314 ~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~ 393 (715)
T 2va8_A 314 GVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRP 393 (715)
T ss_dssp TEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCT
T ss_pred CEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCC
Confidence 4889999999999999999999999999999999999999999999999 99 899999999999999998
Q ss_pred C--CCceEEEecChhh
Q 011052 182 G--KEGTAILMFTSSQ 195 (494)
Q Consensus 182 G--~~g~~i~l~~~~e 195 (494)
| ..|.|++++++.+
T Consensus 394 g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 394 GFDQIGESIVVVRDKE 409 (715)
T ss_dssp TTCSCEEEEEECSCGG
T ss_pred CCCCCceEEEEeCCch
Confidence 8 5799999998765
No 43
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.86 E-value=2.6e-21 Score=212.78 Aligned_cols=174 Identities=20% Similarity=0.305 Sum_probs=132.3
Q ss_pred CCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHHHHHHhccCCcEEEEcCCh
Q 011052 19 PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTK 98 (494)
Q Consensus 19 ~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IVF~~t~ 98 (494)
...|+++||||+++...... .. .++............ ..+......+..++..+......+.++||||+|+
T Consensus 385 ~~~q~i~~SAT~~~~~~~~~----~~--~~~~~~r~~~l~~p~---i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~ 455 (661)
T 2d7d_A 385 HMHNIVYVSATPGPYEIEHT----DE--MVEQIIRPTGLLDPL---IDVRPIEGQIDDLIGEIQARIERNERVLVTTLTK 455 (661)
T ss_dssp TCSEEEEECSSCCHHHHHHC----SS--CEEECCCTTCCCCCE---EEEECSTTHHHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred cCCCEEEEecCCChhHHHhh----hC--eeeeeecccCCCCCe---EEEecccchHHHHHHHHHHHHhcCCeEEEEECCH
Confidence 46899999999987643221 11 122211111111111 2222222333444455555445668999999999
Q ss_pred hhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEecCC-----CCChhhHH
Q 011052 99 RDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYEL-----PNDPETFV 172 (494)
Q Consensus 99 ~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~~~~-----P~~~~~y~ 172 (494)
..|+.+++.|.. ++.+..+||++++.+|.+++++|++|+++|||||+++++|+|+|+|++||++|. |.+.++|+
T Consensus 456 ~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~i 535 (661)
T 2d7d_A 456 KMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLI 535 (661)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHH
T ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHH
Confidence 999999999986 789999999999999999999999999999999999999999999999999997 99999999
Q ss_pred HHhcccCCCCCCceEEEecChhhHHHHHHH
Q 011052 173 HRSGRTGRAGKEGTAILMFTSSQRRTVRSL 202 (494)
Q Consensus 173 qr~GR~gR~G~~g~~i~l~~~~e~~~l~~l 202 (494)
||+|||||. ..|.|++|+++.+....+.+
T Consensus 536 Qr~GRagR~-~~G~~i~~~~~~~~~~~~~i 564 (661)
T 2d7d_A 536 QTIGRAARN-AEGRVIMYADKITKSMEIAI 564 (661)
T ss_dssp HHHHTTTTS-TTCEEEEECSSCCHHHHHHH
T ss_pred HHhCcccCC-CCCEEEEEEeCCCHHHHHHH
Confidence 999999998 68999999988765544443
No 44
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.86 E-value=9.9e-23 Score=223.89 Aligned_cols=175 Identities=14% Similarity=0.182 Sum_probs=130.8
Q ss_pred hHHHHHHHHHhCC-CCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHHHHHH
Q 011052 6 FEEDVELILENLP-PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 84 (494)
Q Consensus 6 F~~~i~~Il~~lp-~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~ 84 (494)
+..++..+...++ .++|+++||||+|..+..+... +...+.+.. ..+...+.+++..+.
T Consensus 348 ~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~~---~~~i~~v~~---------------~~~~~~~~~~l~~l~-- 407 (673)
T 2wv9_A 348 SIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPDT---NSPVHDVSS---------------EIPDRAWSSGFEWIT-- 407 (673)
T ss_dssp HHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCC---SSCEEEEEC---------------CCCSSCCSSCCHHHH--
T ss_pred HHHHHHHHHHhccccCCcEEEEcCCCChhhhhhccc---CCceEEEee---------------ecCHHHHHHHHHHHH--
Confidence 3445555555543 6799999999998775433211 111111110 011111112222222
Q ss_pred hccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEe--
Q 011052 85 YAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH-- 161 (494)
Q Consensus 85 ~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~-- 161 (494)
....++||||+|++.|+.+++.|.. ++.+..+||+ +|++++++|++|+++|||||+++++|||+| +++|||
T Consensus 408 -~~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g 481 (673)
T 2wv9_A 408 -DYAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCR 481 (673)
T ss_dssp -SCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECC
T ss_pred -hCCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECC
Confidence 2468999999999999999999986 7899999994 899999999999999999999999999999 999998
Q ss_pred ------------------cCCCCChhhHHHHhcccCCC-CCCceEEEec---ChhhHHHHHHHHHHh
Q 011052 162 ------------------YELPNDPETFVHRSGRTGRA-GKEGTAILMF---TSSQRRTVRSLERDV 206 (494)
Q Consensus 162 ------------------~~~P~~~~~y~qr~GR~gR~-G~~g~~i~l~---~~~e~~~l~~le~~~ 206 (494)
|++|.+.++|+||+||+||. +++|.|++|+ ++.|...++.++...
T Consensus 482 ~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~ 548 (673)
T 2wv9_A 482 KSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKI 548 (673)
T ss_dssp EECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred CcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHH
Confidence 67999999999999999999 7899999996 566766667676654
No 45
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.86 E-value=2.2e-22 Score=221.07 Aligned_cols=127 Identities=24% Similarity=0.280 Sum_probs=111.3
Q ss_pred EcCcccHHHHHHHHHHH-hccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEech
Q 011052 68 STTATSKRTILSDLITV-YAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (494)
Q Consensus 68 ~~~~~~k~~~L~~ll~~-~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~ 145 (494)
.+....|...|...+.. +..+.++||||+|++.++.|+..|.+ ++++.+||+++.+.++..+.++|+.| .|+||||
T Consensus 439 ~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~G--~VtIATn 516 (922)
T 1nkt_A 439 YKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRRG--GVTVATN 516 (922)
T ss_dssp ESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTSTT--CEEEEET
T ss_pred EeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecc
Confidence 34455677777666644 44567999999999999999999986 89999999999888888888999988 5999999
Q ss_pred hhhccCCCCcc----------------------------------------------------cEEEecCCCCChhhHHH
Q 011052 146 VAARGLDIPNV----------------------------------------------------DLIIHYELPNDPETFVH 173 (494)
Q Consensus 146 ~~~~GiDip~v----------------------------------------------------~~VI~~~~P~~~~~y~q 173 (494)
+|+||+||+.+ .|||+|+.|.+...|+|
T Consensus 517 mAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~q 596 (922)
T 1nkt_A 517 MAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQ 596 (922)
T ss_dssp TCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHH
T ss_pred hhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHH
Confidence 99999999864 59999999999999999
Q ss_pred HhcccCCCCCCceEEEecChhhH
Q 011052 174 RSGRTGRAGKEGTAILMFTSSQR 196 (494)
Q Consensus 174 r~GR~gR~G~~g~~i~l~~~~e~ 196 (494)
|+|||||+|.+|.+++|++..|.
T Consensus 597 r~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 597 LRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp HHHTSSGGGCCEEEEEEEETTSH
T ss_pred HhcccccCCCCeeEEEEechhHH
Confidence 99999999999999999987764
No 46
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.85 E-value=1.1e-20 Score=207.87 Aligned_cols=176 Identities=22% Similarity=0.308 Sum_probs=134.3
Q ss_pred CCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHHHHHHhccCCcEEEEcCCh
Q 011052 19 PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTK 98 (494)
Q Consensus 19 ~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IVF~~t~ 98 (494)
...|+++||||++...... . ...+............ ...+.........++..+......+.++||||+|+
T Consensus 379 ~~~q~i~~SAT~~~~~~~~----~--~~~~~~~~r~~~l~~p---~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~ 449 (664)
T 1c4o_A 379 RVSQVVFVSATPGPFELAH----S--GRVVEQIIRPTGLLDP---LVRVKPTENQILDLMEGIRERAARGERTLVTVLTV 449 (664)
T ss_dssp TCSEEEEEESSCCHHHHHH----C--SEEEEECSCTTCCCCC---EEEEECSTTHHHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred hcCCEEEEecCCCHHHHHh----h--hCeeeeeeccCCCCCC---eEEEecccchHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 3679999999998754221 1 1222222111111111 11222222233344445544445678999999999
Q ss_pred hhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEecCC-----CCChhhHH
Q 011052 99 RDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYEL-----PNDPETFV 172 (494)
Q Consensus 99 ~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~~~~-----P~~~~~y~ 172 (494)
..|+.+++.|.. ++.+..+|++|++.+|.+++++|++|+++|||||+++++|+|+|+|++||++|. |.+.++|+
T Consensus 450 ~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~i 529 (664)
T 1c4o_A 450 RMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLI 529 (664)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHH
T ss_pred HHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHH
Confidence 999999999986 788999999999999999999999999999999999999999999999999997 99999999
Q ss_pred HHhcccCCCCCCceEEEecChhhHHHHHHHHH
Q 011052 173 HRSGRTGRAGKEGTAILMFTSSQRRTVRSLER 204 (494)
Q Consensus 173 qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~ 204 (494)
||+|||||.+ .|.+++++++.+....+.+++
T Consensus 530 Qr~GRagR~~-~G~~i~~~~~~~~~~~~~i~~ 560 (664)
T 1c4o_A 530 QTIGRAARNA-RGEVWLYADRVSEAMQRAIEE 560 (664)
T ss_dssp HHHGGGTTST-TCEEEEECSSCCHHHHHHHHH
T ss_pred HHHCccCcCC-CCEEEEEEcCCCHHHHHHHHH
Confidence 9999999995 899999999887776666654
No 47
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.85 E-value=7.9e-21 Score=198.82 Aligned_cols=122 Identities=34% Similarity=0.550 Sum_probs=108.6
Q ss_pred cHHHHHHHHHHHh---ccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecC--------CCCHHHHHHHHccccCCCeeE
Q 011052 73 SKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHG--------DISQHQRERTLNGFRQGKFTV 140 (494)
Q Consensus 73 ~k~~~L~~ll~~~---~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg--------~~~~~~R~~~l~~Fr~g~~~i 140 (494)
.|.+.|.+++..+ .++.++||||++++.++.+++.|.. ++.+..+|| +|++.+|.+++++|++++++|
T Consensus 343 ~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~v 422 (494)
T 1wp9_A 343 PKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNV 422 (494)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSE
T ss_pred hHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceE
Confidence 4566666666664 3578999999999999999999986 789999999 999999999999999999999
Q ss_pred EEechhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhh
Q 011052 141 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 195 (494)
Q Consensus 141 LVaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e 195 (494)
||||+++++|+|+|++++||+||+|+++..|+||+||+||.|. |.+++|+++.+
T Consensus 423 Lv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t 476 (494)
T 1wp9_A 423 LVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGT 476 (494)
T ss_dssp EEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTS
T ss_pred EEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCC
Confidence 9999999999999999999999999999999999999999997 99999988764
No 48
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.85 E-value=2.7e-21 Score=207.19 Aligned_cols=128 Identities=24% Similarity=0.358 Sum_probs=89.7
Q ss_pred cHHHHHHHHHHHh---ccCCcEEEEcCChhhHHHHHHHHhcc-----Cce--------eeecCCCCHHHHHHHHccccC-
Q 011052 73 SKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTSI-----IAS--------EALHGDISQHQRERTLNGFRQ- 135 (494)
Q Consensus 73 ~k~~~L~~ll~~~---~~~~~~IVF~~t~~~~~~l~~~L~~~-----~~~--------~~lhg~~~~~~R~~~l~~Fr~- 135 (494)
.|.+.|..++... .+..++||||++++.++.+++.|... +.+ ..+||+|++.+|.+++++|++
T Consensus 371 ~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~ 450 (555)
T 3tbk_A 371 PKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRAS 450 (555)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC-------------------------
T ss_pred HHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcC
Confidence 3555566666543 34589999999999999999999852 333 345669999999999999999
Q ss_pred CCeeEEEechhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHH
Q 011052 136 GKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 202 (494)
Q Consensus 136 g~~~iLVaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~l 202 (494)
|+++|||||+++++|||+|+|++||+||+|+++..|+||+|| ||. +.|.+++|+++.+......+
T Consensus 451 g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 451 GDNNILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp -CCSEEEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHHHH
T ss_pred CCeeEEEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999 999 89999999998876554443
No 49
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.84 E-value=2e-21 Score=204.90 Aligned_cols=164 Identities=18% Similarity=0.195 Sum_probs=122.3
Q ss_pred CChHHHHHHHHHh-CCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHHHH
Q 011052 4 VGFEEDVELILEN-LPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 82 (494)
Q Consensus 4 ~GF~~~i~~Il~~-lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll 82 (494)
+++...+..+... .++++|+++||||+|..+..+ +..++..+.+.. ..+.. . ...+ ...+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~---~~~~~~~~~~~~----~~p~~--~------~~~~----~~~l 184 (451)
T 2jlq_A 124 PCSVAARGYISTRVEMGEAAAIFMTATPPGSTDPF---PQSNSPIEDIER----EIPER--S------WNTG----FDWI 184 (451)
T ss_dssp HHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSS---CCCSSCEEEEEC----CCCSS--C------CSSS----CHHH
T ss_pred cchHHHHHHHHHhhcCCCceEEEEccCCCccchhh---hcCCCceEecCc----cCCch--h------hHHH----HHHH
Confidence 3444444444332 356899999999998865432 333444443321 00000 0 0111 1222
Q ss_pred HHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEe
Q 011052 83 TVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH 161 (494)
Q Consensus 83 ~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~ 161 (494)
.. ..+++||||+|++.|+.+++.|.+ ++.+..+|+++. ++++++|++|+.+|||||+++++|||+|+ ++|||
T Consensus 185 ~~--~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~ 257 (451)
T 2jlq_A 185 TD--YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVID 257 (451)
T ss_dssp HH--CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEE
T ss_pred Hh--CCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEE
Confidence 22 357999999999999999999986 788999999754 57999999999999999999999999999 99999
Q ss_pred cC--------------------CCCChhhHHHHhcccCCCCC-CceEEEecCh
Q 011052 162 YE--------------------LPNDPETFVHRSGRTGRAGK-EGTAILMFTS 193 (494)
Q Consensus 162 ~~--------------------~P~~~~~y~qr~GR~gR~G~-~g~~i~l~~~ 193 (494)
|| +|.+.++|+||+|||||.|+ .|.|++|+..
T Consensus 258 ~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 258 PRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp CCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred CCCcccccccccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 99 99999999999999999997 8899888743
No 50
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.84 E-value=1.2e-22 Score=214.70 Aligned_cols=102 Identities=19% Similarity=0.318 Sum_probs=92.9
Q ss_pred CCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEe-----
Q 011052 88 GGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH----- 161 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~----- 161 (494)
.+++||||+|++.|+.+++.|.+ ++.+..+|++ +|.+++++|++|+.+|||||+++++|||+|+ ++||+
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~ 264 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSV 264 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEEC
T ss_pred CCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCccc
Confidence 57999999999999999999986 7899999995 7888999999999999999999999999999 99999
Q ss_pred ---------------cCCCCChhhHHHHhcccCCCCC-CceEEEecChh
Q 011052 162 ---------------YELPNDPETFVHRSGRTGRAGK-EGTAILMFTSS 194 (494)
Q Consensus 162 ---------------~~~P~~~~~y~qr~GR~gR~G~-~g~~i~l~~~~ 194 (494)
|++|.+.++|+||+|||||.|. +|.|++|+.+.
T Consensus 265 ~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 265 KPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp CEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred ccccccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 7799999999999999999997 89999998775
No 51
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.84 E-value=3.7e-21 Score=207.39 Aligned_cols=167 Identities=21% Similarity=0.203 Sum_probs=132.4
Q ss_pred cEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEE-EEEEcCcccHHHHHHHHHHH-hccCCcEEEEcCChh
Q 011052 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKL-YAISTTATSKRTILSDLITV-YAKGGKTIVFTQTKR 99 (494)
Q Consensus 22 q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~-~~~~~~~~~k~~~L~~ll~~-~~~~~~~IVF~~t~~ 99 (494)
++..||+|+..+...+.+.|-- .++.+ + .+.+...+.+ ..+.....+|...|...+.. +..+.++||||+|++
T Consensus 411 kL~GMTGTa~te~~Ef~~iY~l--~vv~I-P--tnkp~~R~d~~d~vy~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e 485 (822)
T 3jux_A 411 KLAGMTGTAKTEESEFVQVYGM--EVVVI-P--THKPMIRKDHDDLVFRTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIE 485 (822)
T ss_dssp EEEEEESSCGGGHHHHHHHSCC--CEEEC-C--CSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESSHH
T ss_pred HHeEECCCCchHHHHHHHHhCC--eEEEE-C--CCCCcceeecCcEEEecHHHHHHHHHHHHHHHhhCCCCEEEEECCHH
Confidence 6889999999988888877742 33433 2 2222233333 23445666787777776654 345789999999999
Q ss_pred hHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCC--------cccEEEecCCCCChhh
Q 011052 100 DADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP--------NVDLIIHYELPNDPET 170 (494)
Q Consensus 100 ~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip--------~v~~VI~~~~P~~~~~ 170 (494)
.++.++..|.+ ++++.++||+..+.++..+.++|+.+ .|+||||+|+||+||+ +..+||++++|.+.+.
T Consensus 486 ~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~ 563 (822)
T 3jux_A 486 KSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRI 563 (822)
T ss_dssp HHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHH
T ss_pred HHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHH
Confidence 99999999986 89999999996555555566677766 5999999999999997 5569999999999999
Q ss_pred HHHHhcccCCCCCCceEEEecChhh
Q 011052 171 FVHRSGRTGRAGKEGTAILMFTSSQ 195 (494)
Q Consensus 171 y~qr~GR~gR~G~~g~~i~l~~~~e 195 (494)
|+||+|||||+|.+|.+++|++..|
T Consensus 564 y~qriGRTGRqG~~G~a~~fvsleD 588 (822)
T 3jux_A 564 DNQLRGRAGRQGDPGESIFFLSLED 588 (822)
T ss_dssp HHHHHTTSSCSSCCCEEEEEEETTS
T ss_pred HHHhhCccccCCCCeeEEEEechhH
Confidence 9999999999999999999998776
No 52
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.84 E-value=1.2e-20 Score=218.85 Aligned_cols=179 Identities=17% Similarity=0.234 Sum_probs=144.8
Q ss_pred HHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHHHHHHhccC
Q 011052 9 DVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG 88 (494)
Q Consensus 9 ~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~ 88 (494)
...+++..++.+.|+++||||+++....++...+.++..+... ......+..+.... .+..+...++.....+
T Consensus 740 ~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~----~~~r~~i~~~~~~~---~~~~i~~~il~~l~~g 812 (1151)
T 2eyq_A 740 RHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATP----PARRLAVKTFVREY---DSMVVREAILREILRG 812 (1151)
T ss_dssp HHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCC----CCBCBCEEEEEEEC---CHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecC----CCCccccEEEEecC---CHHHHHHHHHHHHhcC
Confidence 4567777777889999999998877777666555554433221 11122344433322 3445556666676678
Q ss_pred CcEEEEcCChhhHHHHHHHHhc---cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEecCC-
Q 011052 89 GKTIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYEL- 164 (494)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~---~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~~~~- 164 (494)
++++|||++++.++.+++.|++ .+.+..+||+|++.+|++++++|++|+++|||||+++++|||+|++++||+++.
T Consensus 813 ~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~~~ 892 (1151)
T 2eyq_A 813 GQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERAD 892 (1151)
T ss_dssp CEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETTTT
T ss_pred CeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEeCCC
Confidence 9999999999999999999986 467999999999999999999999999999999999999999999999999988
Q ss_pred CCChhhHHHHhcccCCCCCCceEEEecChh
Q 011052 165 PNDPETFVHRSGRTGRAGKEGTAILMFTSS 194 (494)
Q Consensus 165 P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~ 194 (494)
+.+..+|+||+||+||.|+.|.|++++.+.
T Consensus 893 ~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 893 HFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp SSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred CCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 579999999999999999999999998764
No 53
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.84 E-value=4.8e-20 Score=210.90 Aligned_cols=126 Identities=25% Similarity=0.324 Sum_probs=100.7
Q ss_pred HHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cC---------------------------------------ce
Q 011052 75 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-II---------------------------------------AS 114 (494)
Q Consensus 75 ~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~---------------------------------------~~ 114 (494)
...|...+... ...++||||+|++.|+.++..|.. ++ .+
T Consensus 324 ~~~li~~l~~~-~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi 402 (997)
T 4a4z_A 324 WPEIVNYLRKR-ELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGI 402 (997)
T ss_dssp HHHHHHHHHHT-TCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTE
T ss_pred HHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCe
Confidence 33444444433 447999999999999999998864 22 47
Q ss_pred eeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEecCCC---------CChhhHHHHhcccCCCC--C
Q 011052 115 EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELP---------NDPETFVHRSGRTGRAG--K 183 (494)
Q Consensus 115 ~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~~~~P---------~~~~~y~qr~GR~gR~G--~ 183 (494)
.++|++|++.+|+.+++.|++|.++|||||+++++|||+|++.+ |++++| .++..|+||+|||||.| .
T Consensus 403 ~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~~~V-Vi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~ 481 (997)
T 4a4z_A 403 AVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPTRTV-IFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDS 481 (997)
T ss_dssp EEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCCSEE-EESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCS
T ss_pred eeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCCceE-EEeccccccCccCCCCCHHHHhHHhcccccCCCCc
Confidence 89999999999999999999999999999999999999999554 544444 49999999999999998 6
Q ss_pred CceEEEecC--hhhHHHHHHH
Q 011052 184 EGTAILMFT--SSQRRTVRSL 202 (494)
Q Consensus 184 ~g~~i~l~~--~~e~~~l~~l 202 (494)
.|.|++++. ..+...++.+
T Consensus 482 ~G~vi~l~~~~~~~~~~~~~~ 502 (997)
T 4a4z_A 482 TGTVIVMAYNSPLSIATFKEV 502 (997)
T ss_dssp SEEEEEECCSSCCCHHHHHHH
T ss_pred ceEEEEecCCCcchHHHHHHH
Confidence 788888873 3344455544
No 54
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.83 E-value=5.3e-20 Score=207.07 Aligned_cols=123 Identities=20% Similarity=0.333 Sum_probs=71.7
Q ss_pred cHHHHHHHHHHHh---ccCCcEEEEcCChhhHHHHHHHHhc-------------cCceeeecCCCCHHHHHHHHccccC-
Q 011052 73 SKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS-------------IIASEALHGDISQHQRERTLNGFRQ- 135 (494)
Q Consensus 73 ~k~~~L~~ll~~~---~~~~~~IVF~~t~~~~~~l~~~L~~-------------~~~~~~lhg~~~~~~R~~~l~~Fr~- 135 (494)
.|...|..+|... .++.++||||++++.++.+++.|.. +..+..+||+|++.+|.+++++|++
T Consensus 613 ~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~ 692 (797)
T 4a2q_A 613 PKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTS 692 (797)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC---------------------------
T ss_pred hHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhcc
Confidence 3555566666542 4568999999999999999999974 2345567899999999999999999
Q ss_pred CCeeEEEechhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHH
Q 011052 136 GKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRR 197 (494)
Q Consensus 136 g~~~iLVaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~ 197 (494)
|.++|||||+++++|||+|+|++||+||+|+++..|+||+|| ||. +.|.+++|+++.+..
T Consensus 693 g~~~vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~e 752 (797)
T 4a2q_A 693 KDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (797)
T ss_dssp -CCSEEEEECC-------CCCSEEEEESCCSCHHHHHTC---------CCCEEEEECCHHHH
T ss_pred CCceEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcHH
Confidence 999999999999999999999999999999999999999999 999 799999999887643
No 55
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.82 E-value=6.2e-20 Score=209.93 Aligned_cols=166 Identities=17% Similarity=0.252 Sum_probs=143.5
Q ss_pred CcccHHHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc--cCceeeecCCCCHHHHHHHHccccCCC--eeEEEech
Q 011052 70 TATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS--IIASEALHGDISQHQRERTLNGFRQGK--FTVLVATD 145 (494)
Q Consensus 70 ~~~~k~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~--~~~~~~lhg~~~~~~R~~~l~~Fr~g~--~~iLVaT~ 145 (494)
....|...|..++... ++.++||||++++.++.+++.|.. ++.+..+||+|++.+|++++++|++++ ++|||||+
T Consensus 486 ~~~~K~~~L~~ll~~~-~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~ 564 (968)
T 3dmq_A 486 NFDPRVEWLMGYLTSH-RSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSE 564 (968)
T ss_dssp TTSHHHHHHHHHHHHT-SSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSC
T ss_pred CccHHHHHHHHHHHhC-CCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecc
Confidence 3456888888888773 678999999999999999999984 789999999999999999999999998 99999999
Q ss_pred hhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHh--CCCceecCCCCHHHHHH
Q 011052 146 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDV--GCKFEFVSPPVVEDVLE 223 (494)
Q Consensus 146 ~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~--~~~~~~~~~p~~~~i~~ 223 (494)
++++|+|+|++++||+||+|+++..|+||+||++|.|+++.+++++...+....+.|.+.. +.++.....|..+++.+
T Consensus 565 v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~k~~~~~~~~~~~~~i~~ 644 (968)
T 3dmq_A 565 IGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTIYD 644 (968)
T ss_dssp CTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHHHTTCCSSSCCSSHHHHHH
T ss_pred hhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHHHHHHHhCCCceecCCCCHHHHHH
Confidence 9999999999999999999999999999999999999998777765544444445555555 56666778899999999
Q ss_pred HHHHHHHHHHccC
Q 011052 224 SSAEQVVATLNGV 236 (494)
Q Consensus 224 ~~~~~~~~~l~~~ 236 (494)
...+.+...+...
T Consensus 645 ~~~~~l~~~l~~~ 657 (968)
T 3dmq_A 645 SVYNDLINYLASP 657 (968)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhcc
Confidence 8888888877654
No 56
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.82 E-value=8.5e-20 Score=200.26 Aligned_cols=191 Identities=17% Similarity=0.166 Sum_probs=141.4
Q ss_pred CCCCChHHHHHHHHHhCC-CCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHH
Q 011052 1 MLAVGFEEDVELILENLP-PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILS 79 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~lp-~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~ 79 (494)
|++++|..+++.++..++ ++.|++++|||. +.+..++... ..+..+... .. ...... .... +.
T Consensus 251 l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~-~~i~~l~~~~-~~~~~v~~~----~r-~~~l~~---~~~~------l~ 314 (677)
T 3rc3_A 251 IRDPARGWAWTRALLGLCAEEVHLCGEPAAI-DLVMELMYTT-GEEVEVRDY----KR-LTPISV---LDHA------LE 314 (677)
T ss_dssp GGCTTTHHHHHHHHHHCCEEEEEEEECGGGH-HHHHHHHHHH-TCCEEEEEC----CC-SSCEEE---CSSC------CC
T ss_pred cCCccchHHHHHHHHccCccceEEEeccchH-HHHHHHHHhc-CCceEEEEe----ee-cchHHH---HHHH------HH
Confidence 568899999999999998 788999999996 3455555443 333333211 00 011110 0000 00
Q ss_pred HHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccC--CCeeEEEechhhhccCCCCcc
Q 011052 80 DLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQ--GKFTVLVATDVAARGLDIPNV 156 (494)
Q Consensus 80 ~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~--g~~~iLVaT~~~~~GiDip~v 156 (494)
.+.. .....||||+|++.++.+++.|.+ ++.+.++||+|++.+|.++++.|++ |.++|||||+++++|||+ +|
T Consensus 315 -~l~~--~~~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v 390 (677)
T 3rc3_A 315 -SLDN--LRPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SI 390 (677)
T ss_dssp -SGGG--CCTTEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CB
T ss_pred -HHHh--cCCCCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-Cc
Confidence 1111 134568999999999999999986 7899999999999999999999999 889999999999999999 89
Q ss_pred cEEEecCC--------------CCChhhHHHHhcccCCCCCC---ceEEEecChhhHHHHHHHHHHhCCCcee
Q 011052 157 DLIIHYEL--------------PNDPETFVHRSGRTGRAGKE---GTAILMFTSSQRRTVRSLERDVGCKFEF 212 (494)
Q Consensus 157 ~~VI~~~~--------------P~~~~~y~qr~GR~gR~G~~---g~~i~l~~~~e~~~l~~le~~~~~~~~~ 212 (494)
++||++++ |.+.++|+||+|||||.|.. |.|++++.. +...++.+.......++.
T Consensus 391 ~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~-d~~~~~~~~~~~~~~i~~ 462 (677)
T 3rc3_A 391 RRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHE-DLSLLKEILKRPVDPIRA 462 (677)
T ss_dssp SEEEESCSBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTT-HHHHHHHHHHSCCCCCCC
T ss_pred cEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecc-hHHHHHHHHhcCcchhhh
Confidence 99999999 88999999999999999954 677666544 445566665554444444
No 57
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.81 E-value=3.9e-20 Score=204.82 Aligned_cols=102 Identities=28% Similarity=0.523 Sum_probs=88.5
Q ss_pred CCcEEEEcCChhhHHHHHHHHhc-------cCceeeecCC--------CCHHHHHHHHccccCCCeeEEEechhhhccCC
Q 011052 88 GGKTIVFTQTKRDADEVSLALTS-------IIASEALHGD--------ISQHQRERTLNGFRQGKFTVLVATDVAARGLD 152 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~-------~~~~~~lhg~--------~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiD 152 (494)
+.++||||++++.++.+++.|.. ++.+..+||+ |++.+|.+++++|++|+++|||||+++++|||
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GID 479 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLD 479 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCc
Confidence 68999999999999999999985 4889999999 99999999999999999999999999999999
Q ss_pred CCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecC
Q 011052 153 IPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFT 192 (494)
Q Consensus 153 ip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~ 192 (494)
+|+|++||+||+|++++.|+||+||+||.| .+++++.
T Consensus 480 ip~v~~VI~~d~p~s~~~~~Qr~GRArr~g---~~~~l~~ 516 (699)
T 4gl2_A 480 IKECNIVIRYGLVTNEIAMVQARGRARADE---STYVLVA 516 (699)
T ss_dssp CCSCCCCEEESCCCCHHHHHHHHTTSCSSS---CEEEEEE
T ss_pred cccCCEEEEeCCCCCHHHHHHHcCCCCCCC---ceEEEEE
Confidence 999999999999999999999999976654 4444443
No 58
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.81 E-value=4.5e-19 Score=202.38 Aligned_cols=122 Identities=20% Similarity=0.340 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHh---ccCCcEEEEcCChhhHHHHHHHHhcc-------------CceeeecCCCCHHHHHHHHccccC-C
Q 011052 74 KRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTSI-------------IASEALHGDISQHQRERTLNGFRQ-G 136 (494)
Q Consensus 74 k~~~L~~ll~~~---~~~~~~IVF~~t~~~~~~l~~~L~~~-------------~~~~~lhg~~~~~~R~~~l~~Fr~-g 136 (494)
|...|.++|... .++.++||||++++.++.+++.|... ..+..+||+|++.+|.+++++|++ |
T Consensus 614 K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g 693 (936)
T 4a2w_A 614 KLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSK 693 (936)
T ss_dssp HHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------
T ss_pred HHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccC
Confidence 445555555543 34689999999999999999999842 234566899999999999999999 9
Q ss_pred CeeEEEechhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHH
Q 011052 137 KFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRR 197 (494)
Q Consensus 137 ~~~iLVaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~ 197 (494)
.++|||||+++++|||+|+|++||+||+|+++..|+||+|| ||. +.|.+++|++..+..
T Consensus 694 ~~~VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~e 752 (936)
T 4a2w_A 694 DNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (936)
T ss_dssp CCSEEEEECC------CCCCSEEEEESCCSCSHHHHCC---------CCCEEEEESCHHHH
T ss_pred CeeEEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCHH
Confidence 99999999999999999999999999999999999999999 999 789999998876543
No 59
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.81 E-value=2.5e-20 Score=207.48 Aligned_cols=173 Identities=17% Similarity=0.264 Sum_probs=127.7
Q ss_pred CCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHHHHHHhccCCcEEEEcC
Q 011052 17 LPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQ 96 (494)
Q Consensus 17 lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IVF~~ 96 (494)
...++|+++||||+++....+. +..+.....+..... ....+..+. ........++..+.+....+.+++|||+
T Consensus 513 ~~~~~~vL~mSATp~p~tl~~~--~~g~~~~s~i~~~p~--~r~~i~~~~--~~~~~~~~l~~~i~~~l~~g~qvlVf~~ 586 (780)
T 1gm5_A 513 KGKMVDTLVMSATPIPRSMALA--FYGDLDVTVIDEMPP--GRKEVQTML--VPMDRVNEVYEFVRQEVMRGGQAFIVYP 586 (780)
T ss_dssp SSSCCCEEEEESSCCCHHHHHH--HTCCSSCEEECCCCS--SCCCCEECC--CCSSTHHHHHHHHHHHTTTSCCBCCBCC
T ss_pred hCCCCCEEEEeCCCCHHHHHHH--HhCCcceeeeeccCC--CCcceEEEE--eccchHHHHHHHHHHHHhcCCcEEEEec
Confidence 3457899999999876654433 333322111111111 112233222 2233344445555555566789999999
Q ss_pred Ch--------hhHHHHHHHHhc----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEecCC
Q 011052 97 TK--------RDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYEL 164 (494)
Q Consensus 97 t~--------~~~~~l~~~L~~----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~~~~ 164 (494)
+. ..++.+++.|.+ .+.+..+||+|++.+|++++++|++|+++|||||+++++|+|+|++++||++++
T Consensus 587 ~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi~d~ 666 (780)
T 1gm5_A 587 LIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENP 666 (780)
T ss_dssp CC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEBCSC
T ss_pred chhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEEeCC
Confidence 76 457888888876 457899999999999999999999999999999999999999999999999999
Q ss_pred CC-ChhhHHHHhcccCCCCCCceEEEecChhh
Q 011052 165 PN-DPETFVHRSGRTGRAGKEGTAILMFTSSQ 195 (494)
Q Consensus 165 P~-~~~~y~qr~GR~gR~G~~g~~i~l~~~~e 195 (494)
|. +...|+||+||+||.|+.|.|++++.+.+
T Consensus 667 ~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~ 698 (780)
T 1gm5_A 667 ERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVG 698 (780)
T ss_dssp SSSCTTHHHHHHHTSCCSSTTCEEECCCCSCC
T ss_pred CCCCHHHHHHHhcccCcCCCCCEEEEEECCCC
Confidence 96 78899999999999999999999998433
No 60
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.81 E-value=3.2e-20 Score=194.55 Aligned_cols=162 Identities=17% Similarity=0.186 Sum_probs=116.2
Q ss_pred CChHHHHHHHHHhC-CCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHHHH
Q 011052 4 VGFEEDVELILENL-PPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 82 (494)
Q Consensus 4 ~GF~~~i~~Il~~l-p~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll 82 (494)
++|...+..+.... +.++|+++||||+|+.+..+.. .++..+.+.. ..+.... ..+..++
T Consensus 107 ~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~~~~---~~~~i~~~~~---------------~~~~~~~-~~~~~~l 167 (431)
T 2v6i_A 107 PASVAARGYIETRVSMGDAGAIFMTATPPGTTEAFPP---SNSPIIDEET---------------RIPDKAW-NSGYEWI 167 (431)
T ss_dssp HHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCSSCC---CSSCCEEEEC---------------CCCSSCC-SSCCHHH
T ss_pred ccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhhhcC---CCCceeeccc---------------cCCHHHH-HHHHHHH
Confidence 34555555555543 5689999999999875432211 0111111110 0111111 1112223
Q ss_pred HHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccE---
Q 011052 83 TVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL--- 158 (494)
Q Consensus 83 ~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~--- 158 (494)
.. ..+++||||++++.|+.+++.|++ ++.+..+||+ +|++++++|++|+++|||||+++++|+|+| +.+
T Consensus 168 ~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~ 240 (431)
T 2v6i_A 168 TE--FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVID 240 (431)
T ss_dssp HS--CSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEE
T ss_pred Hc--CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEe
Confidence 32 357999999999999999999986 7889999997 678899999999999999999999999999 544
Q ss_pred --------------EEecCCCCChhhHHHHhcccCCCCC-CceEEEec
Q 011052 159 --------------IIHYELPNDPETFVHRSGRTGRAGK-EGTAILMF 191 (494)
Q Consensus 159 --------------VI~~~~P~~~~~y~qr~GR~gR~G~-~g~~i~l~ 191 (494)
||+++.|.+.++|+||+||+||.|. .+.++++.
T Consensus 241 ~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 241 PRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp CCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred cCccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 6788999999999999999999985 55556655
No 61
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.79 E-value=1.5e-18 Score=207.27 Aligned_cols=188 Identities=14% Similarity=0.170 Sum_probs=136.7
Q ss_pred HHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccH-------HHHHHHHHHH
Q 011052 12 LILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSK-------RTILSDLITV 84 (494)
Q Consensus 12 ~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k-------~~~L~~ll~~ 84 (494)
.|...++++.|+|+||||+|+ ..+++++.-.++..+........ +..++++......... ...+...+..
T Consensus 1075 ~i~~~~~~~~riI~lSATl~N-~~dla~WL~~~~~~~~~~~~~~R--PvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~ 1151 (1724)
T 4f92_B 1075 YISSQIERPIRIVALSSSLSN-AKDVAHWLGCSATSTFNFHPNVR--PVPLELHIQGFNISHTQTRLLSMAKPVYHAITK 1151 (1724)
T ss_dssp HHHHTTSSCCEEEEEESCBTT-HHHHHHHHTCCSTTEEECCGGGC--SSCEEEEEEEECCCSHHHHHHTTHHHHHHHHHH
T ss_pred HHHhhcCCCceEEEEeCCCCC-HHHHHHHhCCCCCCeEEeCCCCC--CCCeEEEEEeccCCCchhhhhhhcchHHHHHHH
Confidence 344456788999999999986 45666654333332222211111 1223332222222111 1233455566
Q ss_pred hccCCcEEEEcCChhhHHHHHHHHhc-----------------------------------cCceeeecCCCCHHHHHHH
Q 011052 85 YAKGGKTIVFTQTKRDADEVSLALTS-----------------------------------IIASEALHGDISQHQRERT 129 (494)
Q Consensus 85 ~~~~~~~IVF~~t~~~~~~l~~~L~~-----------------------------------~~~~~~lhg~~~~~~R~~~ 129 (494)
+.+..++||||+|+..|+.++..|.. ...+..+|++|++.+|..+
T Consensus 1152 ~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~V 1231 (1724)
T 4f92_B 1152 HSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLV 1231 (1724)
T ss_dssp HCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHH
T ss_pred hcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHH
Confidence 66778999999999999988876631 0247789999999999999
Q ss_pred HccccCCCeeEEEechhhhccCCCCcccEEEe----------cCCCCChhhHHHHhcccCCCCC--CceEEEecChhhHH
Q 011052 130 LNGFRQGKFTVLVATDVAARGLDIPNVDLIIH----------YELPNDPETFVHRSGRTGRAGK--EGTAILMFTSSQRR 197 (494)
Q Consensus 130 l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~----------~~~P~~~~~y~qr~GR~gR~G~--~g~~i~l~~~~e~~ 197 (494)
++.|++|.++|||||+++++|||+|.+.+||. ...|.++.+|+||+|||||+|. .|.|++++.+.+..
T Consensus 1232 E~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~ 1311 (1724)
T 4f92_B 1232 EQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKD 1311 (1724)
T ss_dssp HHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGHH
T ss_pred HHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEEecchHHH
Confidence 99999999999999999999999999999993 2347789999999999999995 79999999988877
Q ss_pred HHHHH
Q 011052 198 TVRSL 202 (494)
Q Consensus 198 ~l~~l 202 (494)
.++.+
T Consensus 1312 ~~~~l 1316 (1724)
T 4f92_B 1312 FFKKF 1316 (1724)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 62
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.77 E-value=6.7e-20 Score=193.74 Aligned_cols=113 Identities=26% Similarity=0.453 Sum_probs=101.3
Q ss_pred ccHHHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhccCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccC
Q 011052 72 TSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGL 151 (494)
Q Consensus 72 ~~k~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~Gi 151 (494)
..|.+.|.+++... .+.++||||++++.++.+++.|. +..+||++++.+|++++++|++++++|||||+++++|+
T Consensus 334 ~~k~~~l~~~l~~~-~~~k~lvF~~~~~~~~~l~~~l~----~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gl 408 (472)
T 2fwr_A 334 KNKIRKLREILERH-RKDKIIIFTRHNELVYRISKVFL----IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGI 408 (472)
T ss_dssp SHHHHHHHHHHHHT-SSSCBCCBCSCHHHHHHHHHHTT----CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSS
T ss_pred hHHHHHHHHHHHhC-CCCcEEEEECCHHHHHHHHHHhC----cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCc
Confidence 45677788888774 57899999999999999998874 67899999999999999999999999999999999999
Q ss_pred CCCcccEEEecCCCCChhhHHHHhcccCCCCCC-ceEEE
Q 011052 152 DIPNVDLIIHYELPNDPETFVHRSGRTGRAGKE-GTAIL 189 (494)
Q Consensus 152 Dip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~-g~~i~ 189 (494)
|+|++++||++++|+++..|+||+||+||.|.. +.+++
T Consensus 409 dlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i 447 (472)
T 2fwr_A 409 DVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVL 447 (472)
T ss_dssp CSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEE
T ss_pred ccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEE
Confidence 999999999999999999999999999999854 34444
No 63
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.75 E-value=2.9e-18 Score=182.90 Aligned_cols=184 Identities=11% Similarity=0.109 Sum_probs=128.8
Q ss_pred HHHHHHHHhCCCCCcEEEEeecCChHHHHHHH-HHcCCCcEEEecccc----ccccccceEEEEEEcCc-----------
Q 011052 8 EDVELILENLPPKRQSMLFSATMPSWVKKLSR-KYLDNPLNIDLVGNQ----DEKLAEGIKLYAISTTA----------- 71 (494)
Q Consensus 8 ~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~-~~l~~p~~i~~~~~~----~~~~~~~i~~~~~~~~~----------- 71 (494)
.++..|++.++...++++||||+|.....+.. ..+..+..+.+.... .......+....+..+.
T Consensus 240 ~~~~~il~~~~~~~~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (510)
T 2oca_A 240 KSISSIISGLNNCMFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTY 319 (510)
T ss_dssp HHHHHHGGGCTTCCEEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCH
T ss_pred ccHHHHHHhcccCcEEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccch
Confidence 56788889998889999999999766433211 112233332221100 00001111111111111
Q ss_pred ----------ccHHHHHHHHHHHh-cc-CCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCe
Q 011052 72 ----------TSKRTILSDLITVY-AK-GGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKF 138 (494)
Q Consensus 72 ----------~~k~~~L~~ll~~~-~~-~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~ 138 (494)
..+.+.+.+++... .. ..++||||+ .+.++.+++.|.+ ...+..+||+|++.+|+++++.|++++.
T Consensus 320 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~ 398 (510)
T 2oca_A 320 QEEIKIITGLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKG 398 (510)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCC
Confidence 12333444444443 22 345667776 8888899999986 4689999999999999999999999999
Q ss_pred eEEEec-hhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecC
Q 011052 139 TVLVAT-DVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFT 192 (494)
Q Consensus 139 ~iLVaT-~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~ 192 (494)
+||||| +++++|+|+|++++||++++|+++..|+||+||+||.|..+.++++++
T Consensus 399 ~vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 399 IIIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp CEEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred CEEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 999999 999999999999999999999999999999999999998775555444
No 64
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.75 E-value=3.2e-18 Score=168.33 Aligned_cols=120 Identities=17% Similarity=0.298 Sum_probs=94.9
Q ss_pred CcccHHHHHHHHHHHh-ccCCcEEEEcCChhhHHHHHHHHhc--cCceeeecCCCCHHHHHHHHccccCC-Cee-EEEec
Q 011052 70 TATSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTS--IIASEALHGDISQHQRERTLNGFRQG-KFT-VLVAT 144 (494)
Q Consensus 70 ~~~~k~~~L~~ll~~~-~~~~~~IVF~~t~~~~~~l~~~L~~--~~~~~~lhg~~~~~~R~~~l~~Fr~g-~~~-iLVaT 144 (494)
....|...|.+++... ..+.++||||+++..++.+...|.. ++.+..+||++++.+|.+++++|+++ .++ +||+|
T Consensus 93 ~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st 172 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSV 172 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred ccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeh
Confidence 3457888888888765 3568999999999999999999975 78899999999999999999999988 676 78999
Q ss_pred hhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEE
Q 011052 145 DVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAIL 189 (494)
Q Consensus 145 ~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~ 189 (494)
+++++|||++.+++||+||+||++..|+||+||++|.|+++.+.+
T Consensus 173 ~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v 217 (271)
T 1z5z_A 173 KAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIV 217 (271)
T ss_dssp CTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEE
T ss_pred hhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEE
Confidence 999999999999999999999999999999999999997766533
No 65
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.74 E-value=4.9e-18 Score=202.75 Aligned_cols=184 Identities=20% Similarity=0.319 Sum_probs=131.6
Q ss_pred HhCCCCCcEEEEeecCChHHHHHHHHHcC-CCc-EEEeccccccccccceEEEEEEcCccc---HHHHHH----HHHHHh
Q 011052 15 ENLPPKRQSMLFSATMPSWVKKLSRKYLD-NPL-NIDLVGNQDEKLAEGIKLYAISTTATS---KRTILS----DLITVY 85 (494)
Q Consensus 15 ~~lp~~~q~ll~SATlp~~i~~l~~~~l~-~p~-~i~~~~~~~~~~~~~i~~~~~~~~~~~---k~~~L~----~ll~~~ 85 (494)
..++++.|+|++|||+|+ ..++++ |+. ++. .+.+...... +..+++.++...... +.+.+. ..+..+
T Consensus 239 ~~~~~~~riI~LSATl~N-~~dvA~-wL~~~~~~~~~~~~~~~R--PvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 314 (1724)
T 4f92_B 239 EMTQEDVRLIGLSATLPN-YEDVAT-FLRVDPAKGLFYFDNSFR--PVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEH 314 (1724)
T ss_dssp HHHTCCCEEEEEECSCTT-HHHHHH-HTTCCHHHHEEECCGGGC--SSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTC
T ss_pred HhCCCCCcEEEEecccCC-HHHHHH-HhCCCCCCCeEEECCCCc--cCccEEEEeccCCcchhhhhHHHHHHHHHHHHHH
Confidence 356788999999999986 455665 454 221 1222221111 223444444333322 222222 223233
Q ss_pred ccCCcEEEEcCChhhHHHHHHHHhcc--------------------------------------CceeeecCCCCHHHHH
Q 011052 86 AKGGKTIVFTQTKRDADEVSLALTSI--------------------------------------IASEALHGDISQHQRE 127 (494)
Q Consensus 86 ~~~~~~IVF~~t~~~~~~l~~~L~~~--------------------------------------~~~~~lhg~~~~~~R~ 127 (494)
...+++||||+|++.|+.++..|.+. ..+.++||+|++.+|.
T Consensus 315 ~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~ 394 (1724)
T 4f92_B 315 AGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRT 394 (1724)
T ss_dssp CSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHH
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHH
Confidence 44579999999999999988877420 1377899999999999
Q ss_pred HHHccccCCCeeEEEechhhhccCCCCcccEEEe----cC------CCCChhhHHHHhcccCCCC--CCceEEEecChhh
Q 011052 128 RTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH----YE------LPNDPETFVHRSGRTGRAG--KEGTAILMFTSSQ 195 (494)
Q Consensus 128 ~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~----~~------~P~~~~~y~qr~GR~gR~G--~~g~~i~l~~~~e 195 (494)
.+++.|++|.++|||||+++++|||+|.+++||. |+ .|.++.+|+||+|||||+| ..|.+++++.+.+
T Consensus 395 ~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~ 474 (1724)
T 4f92_B 395 LVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGE 474 (1724)
T ss_dssp HHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTT
T ss_pred HHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecchh
Confidence 9999999999999999999999999999999995 44 3568999999999999988 5799999988877
Q ss_pred HHHHHHH
Q 011052 196 RRTVRSL 202 (494)
Q Consensus 196 ~~~l~~l 202 (494)
......+
T Consensus 475 ~~~~~~l 481 (1724)
T 4f92_B 475 LQYYLSL 481 (1724)
T ss_dssp CCHHHHH
T ss_pred HHHHHHH
Confidence 5544444
No 66
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.73 E-value=1.7e-17 Score=180.44 Aligned_cols=101 Identities=21% Similarity=0.302 Sum_probs=88.3
Q ss_pred HHHhccCCcEEEEcCChhhHHHHHHHHhccC---------ceeeecCCCCHHHHHHHHccccCCCee---EEEechhhhc
Q 011052 82 ITVYAKGGKTIVFTQTKRDADEVSLALTSII---------ASEALHGDISQHQRERTLNGFRQGKFT---VLVATDVAAR 149 (494)
Q Consensus 82 l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~---------~~~~lhg~~~~~~R~~~l~~Fr~g~~~---iLVaT~~~~~ 149 (494)
+....+..++||||++++.|+.+++.|.+.. .+..+||++++ +|++++++|++++.+ |||||+++++
T Consensus 433 l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~ 511 (590)
T 3h1t_A 433 MKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTT 511 (590)
T ss_dssp HHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTT
T ss_pred HHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhc
Confidence 3333455899999999999999999997521 27789999864 799999999998766 8999999999
Q ss_pred cCCCCcccEEEecCCCCChhhHHHHhcccCCCCC
Q 011052 150 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGK 183 (494)
Q Consensus 150 GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~ 183 (494)
|+|+|+|++||++++|.++..|+||+||++|.+.
T Consensus 512 GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 512 GVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp TCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred CccchheeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 9999999999999999999999999999999774
No 67
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.59 E-value=1.8e-15 Score=160.94 Aligned_cols=118 Identities=17% Similarity=0.305 Sum_probs=100.8
Q ss_pred ccHHHHHHHHHHHh-ccCCcEEEEcCChhhHHHHHHHHhc--cCceeeecCCCCHHHHHHHHccccCC-Cee-EEEechh
Q 011052 72 TSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTS--IIASEALHGDISQHQRERTLNGFRQG-KFT-VLVATDV 146 (494)
Q Consensus 72 ~~k~~~L~~ll~~~-~~~~~~IVF~~t~~~~~~l~~~L~~--~~~~~~lhg~~~~~~R~~~l~~Fr~g-~~~-iLVaT~~ 146 (494)
..|...+.+++... .++.++||||+++..++.+++.|.. ++.+..+||++++.+|++++++|+++ .++ +||||++
T Consensus 324 s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~ 403 (500)
T 1z63_A 324 SGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKA 403 (500)
T ss_dssp CHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCC
T ss_pred chhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeccc
Confidence 45777777777654 4568999999999999999999985 68899999999999999999999988 555 7999999
Q ss_pred hhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEE
Q 011052 147 AARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAIL 189 (494)
Q Consensus 147 ~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~ 189 (494)
+++|+|+|.+++||+||+|+++..|+||+||++|.|++..+.+
T Consensus 404 ~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v 446 (500)
T 1z63_A 404 GGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIV 446 (500)
T ss_dssp C-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEE
T ss_pred ccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEE
Confidence 9999999999999999999999999999999999997766544
No 68
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.56 E-value=2.1e-14 Score=157.61 Aligned_cols=134 Identities=12% Similarity=0.254 Sum_probs=112.0
Q ss_pred ccHHHHHHHHHHHhc--cCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCe---eEEEech
Q 011052 72 TSKRTILSDLITVYA--KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKF---TVLVATD 145 (494)
Q Consensus 72 ~~k~~~L~~ll~~~~--~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~---~iLVaT~ 145 (494)
..|...|..++.... .+.++||||+++..++.+...|.. ++.+..+||++++.+|.+++++|+++.. .+||+|+
T Consensus 398 s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~ 477 (644)
T 1z3i_X 398 SGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSK 477 (644)
T ss_dssp SHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGG
T ss_pred ChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecc
Confidence 357777877777652 468999999999999999999985 7899999999999999999999999865 4899999
Q ss_pred hhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEE--ecChh--hHHHHHHHHHH
Q 011052 146 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAIL--MFTSS--QRRTVRSLERD 205 (494)
Q Consensus 146 ~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~--l~~~~--e~~~l~~le~~ 205 (494)
+++.|||++.+++||+||+|+++..|.|++||++|.|++..+.+ |+... |...++.+++.
T Consensus 478 a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiEe~i~~~~~~K 541 (644)
T 1z3i_X 478 AGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHK 541 (644)
T ss_dssp GSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHHH
T ss_pred cccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999997765544 44432 44444444433
No 69
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.51 E-value=1e-13 Score=155.88 Aligned_cols=136 Identities=18% Similarity=0.341 Sum_probs=115.0
Q ss_pred ccHHHHHHHHHHHh-ccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCe---eEEEechh
Q 011052 72 TSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKF---TVLVATDV 146 (494)
Q Consensus 72 ~~k~~~L~~ll~~~-~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~---~iLVaT~~ 146 (494)
..|..+|..++..+ ..+.++||||+.+..++.|...|.. ++.+..+||++++.+|.+++++|+++.. .+|++|.+
T Consensus 555 s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~a 634 (800)
T 3mwy_W 555 SGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRA 634 (800)
T ss_dssp CHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHH
T ss_pred ChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEeccc
Confidence 34777888888776 3457999999999999999999985 8899999999999999999999998554 49999999
Q ss_pred hhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEE--ecChh--hHHHHHHHHHHhC
Q 011052 147 AARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAIL--MFTSS--QRRTVRSLERDVG 207 (494)
Q Consensus 147 ~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~--l~~~~--e~~~l~~le~~~~ 207 (494)
++.|||++.+++||+||+|+++..++|++||+.|.|++..+.+ |++.. |...++.+++...
T Consensus 635 gg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~~ 699 (800)
T 3mwy_W 635 GGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMI 699 (800)
T ss_dssp HTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHTT
T ss_pred ccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999997655544 44433 5566666665543
No 70
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.44 E-value=7.6e-13 Score=151.16 Aligned_cols=120 Identities=11% Similarity=0.128 Sum_probs=94.1
Q ss_pred CCcEEEEcCChhhHHHHHHHHhcc-------------Cce-eeecCC----------C----------CH----------
Q 011052 88 GGKTIVFTQTKRDADEVSLALTSI-------------IAS-EALHGD----------I----------SQ---------- 123 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~~-------------~~~-~~lhg~----------~----------~~---------- 123 (494)
+.++||||++++.|..+++.|.+. +.+ .++|++ + ++
T Consensus 537 g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I 616 (1038)
T 2w00_A 537 GFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAI 616 (1038)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHH
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHH
Confidence 358999999999999999998752 344 455542 2 32
Q ss_pred -------------------HHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCC
Q 011052 124 -------------------HQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKE 184 (494)
Q Consensus 124 -------------------~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~ 184 (494)
.+|..++++|++++++|||+|+++.+|+|+|.+ +|+.+|.|.+...|+|++||++|.+..
T Consensus 617 ~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~ 695 (1038)
T 2w00_A 617 REYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDA 695 (1038)
T ss_dssp HHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCT
T ss_pred HHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCC
Confidence 247889999999999999999999999999999 788999999999999999999998753
Q ss_pred ----ceEEEecChhhHHHHHHHHHHhCCC
Q 011052 185 ----GTAILMFTSSQRRTVRSLERDVGCK 209 (494)
Q Consensus 185 ----g~~i~l~~~~e~~~l~~le~~~~~~ 209 (494)
|.++.|+.. .....+.+..+....
T Consensus 696 ~K~~G~IVdf~~~-~~~l~~Al~~y~~~~ 723 (1038)
T 2w00_A 696 TKTFGNIVTFRDL-ERSTIDAITLFGDKN 723 (1038)
T ss_dssp TCCSEEEEESSCC-HHHHHHHHHHTSCSS
T ss_pred CCCcEEEEEcccc-HHHHHHHHHHHhCCC
Confidence 667777654 334445555554443
No 71
>2e29_A ATP-dependent RNA helicase DDX50; ATP binding, hydrolase, nuclear protein, nucleotide-binding, RNA-binding, GUCT domain, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.5
Probab=98.80 E-value=1e-08 Score=82.88 Aligned_cols=89 Identities=22% Similarity=0.297 Sum_probs=72.1
Q ss_pred HcCCCCCCCCcccccCCCCceEEEEecCCccccCccchhHHHHHhhhhcC-cCccccccEEEeecCCcceeEEecCHHHH
Q 011052 267 LSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYP-TAADEIGKIHIIADDRVQGAVFDLPEEIA 345 (494)
Q Consensus 267 ~~g~~~~~~~rsl~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~i~~~~~-~~~~~ig~i~~~~~~~~~gs~~d~~~~~~ 345 (494)
++|+.+ +++|||+++++|++|+.+..+.+ .-.|..++.+|.+..+ ...++|++|.+..+. +|++||||++.+
T Consensus 2 ~SG~te-~~~RSLLt~~eG~~Tl~l~~~~~----i~~~~y~w~~L~~~l~e~~~~~v~~m~l~~d~--~GavFDvP~e~~ 74 (92)
T 2e29_A 2 SSGSSG-FEPRSLITSDKGFVTMTLESLEE----IQDVSCAWKELNRKLSSNAVSQITRMCLLKGN--MGVCFDVPTTES 74 (92)
T ss_dssp CCSCSC-CCCCCCCCCCCCEEEEEEECSSC----CSSTHHHHHHHHHHSCHHHHTTCEEEEECTTS--SEEEEEEEHHHH
T ss_pred CCCcCC-CCCcccccCCCCCEEEEEecCCc----ccchHHHHHHHHHhcCHHHHhhhCeEEEecCC--CEEEEECcHHHH
Confidence 457777 45699999999999999987763 3458888899998554 445679999999886 599999999999
Q ss_pred HHHHhhcCCCCCceEee
Q 011052 346 KELLNKQIPPGNTISKI 362 (494)
Q Consensus 346 ~~~~~~~~~~~~~l~v~ 362 (494)
+++++.+.+..++++|+
T Consensus 75 ~~~~~~~~~~~~~l~v~ 91 (92)
T 2e29_A 75 ERLQAEWHDSDWILSVP 91 (92)
T ss_dssp HHHHHHCCSSSCEEECC
T ss_pred HHHHhhCCCCceEEEec
Confidence 99999977644777765
No 72
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=98.56 E-value=8.9e-07 Score=97.87 Aligned_cols=167 Identities=20% Similarity=0.213 Sum_probs=114.2
Q ss_pred cEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEE-EEEcCcccHHHH-HHHHHHHhccCCcEEEEcCChh
Q 011052 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLY-AISTTATSKRTI-LSDLITVYAKGGKTIVFTQTKR 99 (494)
Q Consensus 22 q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~-~~~~~~~~k~~~-L~~ll~~~~~~~~~IVF~~t~~ 99 (494)
.+.-||.|...+-.++.+.|--+ ++. ++. ++......+- .+......|... +.++...+..+.++||+|.|.+
T Consensus 380 kLsGMTGTA~tE~~Ef~~iY~l~--Vv~-IPT--n~p~~R~D~~d~vy~t~~~K~~AIv~eI~~~~~~GqPVLVgT~SIe 454 (997)
T 2ipc_A 380 KRAGMTGTAKTEEKEFQEIYGMD--VVV-VPT--NRPVIRKDFPDVVYRTEKGKFYAVVEEIAEKYERGQPVLVGTISIE 454 (997)
T ss_dssp EEEEEESSCGGGHHHHHHHHCCC--EEE-CCC--SSCCCCEEEEEEEESSHHHHHHHHHHHHHHHHHHTCCEEEECSSHH
T ss_pred HheecCCCchHHHHHHHHHhCCC--EEE-cCC--CCCcccccCCCeEEcCHHHHHHHHHHHHHHHHHCCCCEEEEeCCHH
Confidence 67789999988888887777443 232 222 2222222222 222344456554 4566666677899999999999
Q ss_pred hHHHHHHHHh----------------------------------------------------------------------
Q 011052 100 DADEVSLALT---------------------------------------------------------------------- 109 (494)
Q Consensus 100 ~~~~l~~~L~---------------------------------------------------------------------- 109 (494)
..+.|+..|.
T Consensus 455 ~SE~LS~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 534 (997)
T 2ipc_A 455 KSERLSQMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAWEGLKRAV 534 (997)
T ss_dssp HHHHHHHHHHCGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTSSSTTCSHHHHSGGGGGCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccchhhhhhhhhhhhhhhhccccchhhhhhhhhccccccccccccccccccccccccccccccchhh
Confidence 9999999988
Q ss_pred ------c-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcc-------------------c------
Q 011052 110 ------S-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNV-------------------D------ 157 (494)
Q Consensus 110 ------~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v-------------------~------ 157 (494)
+ +++..+|++.-...+-+-+-+.=+. -.|-|||++|.||.||.== .
T Consensus 535 ~~~~~~~~gI~H~VLNAK~he~EAeIIAqAG~~--GaVTIATNMAGRGTDIkLggn~e~~~~~~~~~~~~~~~~~~~~~~ 612 (997)
T 2ipc_A 535 HTLAVLRQGIPHQVLNAKHHAREAEIVAQAGRS--KTVTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFDRYEWKVELF 612 (997)
T ss_dssp HHHHHHHHCCCCCEECSSSHHHHHHHHHTTTST--TCEEEECSSTTTTSCCCSSCCHHHHHHHTTSSSCSSTTHHHHHHH
T ss_pred hhhHHHHcCCCeeeccccchHHHHHHHHhcCCC--CeEEEEecccCCCcCeecCCCHHHHHHHHHHhhcccccccccccc
Confidence 2 3455566655322222222233233 3599999999999998311 1
Q ss_pred -------------------------------------------------EEEecCCCCChhhHHHHhcccCCCCCCceEE
Q 011052 158 -------------------------------------------------LIIHYELPNDPETFVHRSGRTGRAGKEGTAI 188 (494)
Q Consensus 158 -------------------------------------------------~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i 188 (494)
|||-...+.+..--.|-.||+||.|.+|.+.
T Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~GGLhVIGTeRhESrRIDnQLRGRaGRQGDPGsSr 692 (997)
T 2ipc_A 613 IKKMVAGKEEEARALAQELGIREELLERIREIREECKQDEERVRALGGLFIIGTERHESRRIDNQLRGRAGRQGDPGGSR 692 (997)
T ss_dssp HHHHHHTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEESSCCSSHHHHHHHHHTSSCSSCCCEEE
T ss_pred cccccccchhhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhcCCeEEEeccCCchHHHHHHHhcccccCCCCCCeE
Confidence 7999999999999999999999999999998
Q ss_pred EecChhh
Q 011052 189 LMFTSSQ 195 (494)
Q Consensus 189 ~l~~~~e 195 (494)
+|++-.|
T Consensus 693 F~LSLeD 699 (997)
T 2ipc_A 693 FYVSFDD 699 (997)
T ss_dssp EEEESSS
T ss_pred EEEECCh
Confidence 8876554
No 73
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=98.35 E-value=1.6e-06 Score=92.91 Aligned_cols=75 Identities=16% Similarity=0.287 Sum_probs=49.3
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhccCceeeecCCCCHHHHHHHHccccCCCeeEEE--echhhhccCCCCc----ccEEE
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLV--ATDVAARGLDIPN----VDLII 160 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLV--aT~~~~~GiDip~----v~~VI 160 (494)
.++.+|||++|...++.+++.|.. + ...+++.. .++.+++++|+++. .||+ +|+.+++|||+|+ +++||
T Consensus 383 ~~g~~lvff~S~~~~~~v~~~l~~-~-~~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~~~~Vi 457 (540)
T 2vl7_A 383 SSKSVLVFFPSYEMLESVRIHLSG-I-PVIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENLFESLV 457 (540)
T ss_dssp CSSEEEEEESCHHHHHHHHTTCTT-S-CEEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------CEEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHhcc-C-ceEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCcccccEEE
Confidence 457899999999999999988865 2 23455553 46888999998864 4665 8999999999997 89999
Q ss_pred ecCCCC
Q 011052 161 HYELPN 166 (494)
Q Consensus 161 ~~~~P~ 166 (494)
++++|.
T Consensus 458 i~~lPf 463 (540)
T 2vl7_A 458 LAGLPY 463 (540)
T ss_dssp EESCCC
T ss_pred EECCCC
Confidence 999884
No 74
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=98.03 E-value=4.7e-06 Score=64.92 Aligned_cols=61 Identities=16% Similarity=0.275 Sum_probs=52.4
Q ss_pred eEEEEecCCccccCccchhHHHHHhhhhcCcCccccccEEEeecCCcceeEEecCHHHHHHHHhhcCC
Q 011052 287 VTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIP 354 (494)
Q Consensus 287 ~t~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~ig~i~~~~~~~~~gs~~d~~~~~~~~~~~~~~~ 354 (494)
+|++++.++ ++++.|.+|+++|++..++..++||+|.+.+++ |||++|++.++++++.+..
T Consensus 1 ~~~~i~~Gr---k~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~~----s~v~v~~~~~~~~~~~l~~ 61 (76)
T 2g0c_A 1 MKLYFNGGK---KKKIRAVDFVGTIAKIDGVSADDIGIITIMDNA----SYVEILNGKGPHVLKVMKN 61 (76)
T ss_dssp CEEEESCCC---C----CHHHHHHHHTSTTCCGGGEEEEEECSSC----EEEEECTTCHHHHHHHHTT
T ss_pred CEEEEeCCC---ccCCCHHHHHHHHHHccCCChhhccEEEEeCCc----EEEEECHHHHHHHHHHhcc
Confidence 478888888 889999999999999999999999999999998 7999999999999988765
No 75
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=97.75 E-value=0.00029 Score=76.57 Aligned_cols=104 Identities=20% Similarity=0.260 Sum_probs=69.2
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhccCceeeecCCCCHHHHHHHHccccCCCeeEEEech--hhhccCCCCc--ccEEEec
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATD--VAARGLDIPN--VDLIIHY 162 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~--~~~~GiDip~--v~~VI~~ 162 (494)
.++.++||+++....+++++.|. .+... ..-+++..++..++++|+ ++-.||++|. .+.+|||+|+ ++.||..
T Consensus 447 ~~g~~lvlF~Sy~~l~~v~~~l~-~~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~ 523 (620)
T 4a15_A 447 VKKNTIVYFPSYSLMDRVENRVS-FEHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILA 523 (620)
T ss_dssp HCSCEEEEESCHHHHHHHTSSCC-SCCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEES
T ss_pred CCCCEEEEeCCHHHHHHHHHHHH-hcchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEE
Confidence 35789999999999999998886 33222 555666678999999999 7788999975 8999999975 6688887
Q ss_pred CCCCCh-----------------------------hhHHHHhcccCCCCCCceEEEecCh
Q 011052 163 ELPNDP-----------------------------ETFVHRSGRTGRAGKEGTAILMFTS 193 (494)
Q Consensus 163 ~~P~~~-----------------------------~~y~qr~GR~gR~G~~g~~i~l~~~ 193 (494)
.+|... ....|-+||.=|.-..--++++++.
T Consensus 524 ~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~ 583 (620)
T 4a15_A 524 GLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDK 583 (620)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECG
T ss_pred cCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEEcc
Confidence 776421 1126889998886544334444444
No 76
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=97.55 E-value=4.8e-05 Score=72.69 Aligned_cols=62 Identities=34% Similarity=0.589 Sum_probs=44.9
Q ss_pred CCCCChHHHHHHHHHh--CCC--CCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEE
Q 011052 1 MLAVGFEEDVELILEN--LPP--KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKL 64 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~--lp~--~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~ 64 (494)
|+++||.+++..|+.. ++. ++|+++||||+|+++.++++.++.+|..|.+.. ......+++|
T Consensus 186 ~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~--~~~~~~~i~q 251 (253)
T 1wrb_A 186 MLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGR--VGSTSDSIKQ 251 (253)
T ss_dssp HHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC-------------
T ss_pred HHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECC--CCCCcCCcee
Confidence 4678999999999995 454 789999999999999999999999998887642 2223444544
No 77
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=97.45 E-value=0.00033 Score=72.61 Aligned_cols=69 Identities=12% Similarity=0.183 Sum_probs=54.3
Q ss_pred CCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEech-----hhhc-cCCCCcc
Q 011052 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAAR-GLDIPNV 156 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~-----~~~~-GiDip~v 156 (494)
..++||.|||++.|.++++.+.+ .+.+..+||+.+..++...+.. .++|+|+|+ .+.+ -+++.++
T Consensus 129 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~----~~~Ivv~Tp~~l~~~l~~~~~~l~~~ 204 (434)
T 2db3_A 129 RPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITR----GCHVVIATPGRLLDFVDRTFITFEDT 204 (434)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTT----CCSEEEECHHHHHHHHHTTSCCCTTC
T ss_pred CccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhc----CCCEEEEChHHHHHHHHhCCcccccC
Confidence 35899999999999999998874 3678889999998877766654 689999997 2223 3567788
Q ss_pred cEEE
Q 011052 157 DLII 160 (494)
Q Consensus 157 ~~VI 160 (494)
++||
T Consensus 205 ~~lV 208 (434)
T 2db3_A 205 RFVV 208 (434)
T ss_dssp CEEE
T ss_pred CeEE
Confidence 8877
No 78
>3i31_A Heat resistant RNA dependent ATPase; RNA helicase, RNA recognition motif, ATP-binding, helicase, nucleotide-binding; 1.80A {Thermus thermophilus}
Probab=97.40 E-value=0.00026 Score=54.67 Aligned_cols=78 Identities=24% Similarity=0.339 Sum_probs=60.7
Q ss_pred CCcccccCCCCceEEEEecCCccccCccchhHHHHHhhhhcCcCccccccEEEeecCCcceeEEecCHHHHHHHHhhcCC
Q 011052 275 SSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIP 354 (494)
Q Consensus 275 ~~rsl~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~ig~i~~~~~~~~~gs~~d~~~~~~~~~~~~~~~ 354 (494)
.++||+++++||+|+.+.-.. ++..-++.++.+.+. +||+|..... |+++|++.+... .-
T Consensus 2 ~~~SLLTGEEGw~Tlkl~G~r------LS~~R~VAlLk~aG~----~iGkI~~~~~----gayaDlr~e~l~------~~ 61 (88)
T 3i31_A 2 AERSLLTGEEGWRTYKATGPR------LSLPRLVALLKGQGL----EVGKVAEAEG----GFYVDLRPEARP------EV 61 (88)
T ss_dssp CCBCTTTCCBSCEEEEEECTT------CCHHHHHHHHHHTTC----CEEEEEEETT----EEEEEECTTCCC------CC
T ss_pred CcccccccCcceEEEEEeccc------ccHHHHHHHHHHccc----ccccEEeccc----eeEEecChHHcc------cc
Confidence 468999999999999997444 788888999887654 8999997543 689999887655 22
Q ss_pred CCCceEeeccCCCcCCCC
Q 011052 355 PGNTISKITKLPALQDDG 372 (494)
Q Consensus 355 ~~~~l~v~~~LP~~~~~~ 372 (494)
.++.+.+.+++|.+.+.+
T Consensus 62 ~~~~~e~A~~v~~~~E~p 79 (88)
T 3i31_A 62 AGLRLEPARRVEGLLEIP 79 (88)
T ss_dssp TTCEEEECCSCCCCC---
T ss_pred ccceehhhhhccccccCC
Confidence 678889999999887754
No 79
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=97.00 E-value=0.0047 Score=66.05 Aligned_cols=75 Identities=12% Similarity=0.139 Sum_probs=53.2
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhccCceeeecCCCCHHHHHHHHccccCCCeeEEEec--hhhhccCCCC-----cccEE
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVAT--DVAARGLDIP-----NVDLI 159 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT--~~~~~GiDip-----~v~~V 159 (494)
.++.+|||+++....+++++.+ ...+..-.-+++. ...++.|+...-.||+|| ..+.+|||+| .++.|
T Consensus 392 ~~g~~lvlF~Sy~~l~~v~~~~--~~~v~~q~~~~~~---~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~l~~v 466 (551)
T 3crv_A 392 AKANVLVVFPSYEIMDRVMSRI--SLPKYVESEDSSV---EDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRSLISDV 466 (551)
T ss_dssp CSSEEEEEESCHHHHHHHHTTC--CSSEEECCSSCCH---HHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEESEEEE
T ss_pred CCCCEEEEecCHHHHHHHHHhc--CCcEEEcCCCCCH---HHHHHHHHhcCCeEEEEEecceecccccccccCCcceeEE
Confidence 3579999999999999998732 2333333335554 445666643334799998 6999999999 37788
Q ss_pred EecCCCC
Q 011052 160 IHYELPN 166 (494)
Q Consensus 160 I~~~~P~ 166 (494)
|...+|.
T Consensus 467 iI~~lPf 473 (551)
T 3crv_A 467 VIVGIPY 473 (551)
T ss_dssp EEESCCC
T ss_pred EEEcCCC
Confidence 8888775
No 80
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=96.97 E-value=0.0057 Score=60.58 Aligned_cols=119 Identities=13% Similarity=0.129 Sum_probs=83.1
Q ss_pred cccHHHHHHHHHHHhc-cCCcEEEEcCChhhHHHHHHHHh-ccCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhh
Q 011052 71 ATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA 148 (494)
Q Consensus 71 ~~~k~~~L~~ll~~~~-~~~~~IVF~~t~~~~~~l~~~L~-~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~ 148 (494)
...|..+|.++|.... .+.++|||++..+..+.+...+. +++...-+.|.....++ +. .+..+.+.+.|....
T Consensus 107 ~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~-k~----~~~~~~i~Lltsag~ 181 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAA-AA----NDFSCTVHLFSSEGI 181 (328)
T ss_dssp TCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCC
T ss_pred cCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhh-hc----ccCCceEEEEECCCC
Confidence 4679999999998874 45699999999999999999987 47888889988554332 21 234555555566555
Q ss_pred ccCC-----CCcccEEEecCCCCChhhH-HHHhcccCCCC----CCceEEEecChh
Q 011052 149 RGLD-----IPNVDLIIHYELPNDPETF-VHRSGRTGRAG----KEGTAILMFTSS 194 (494)
Q Consensus 149 ~GiD-----ip~v~~VI~~~~P~~~~~y-~qr~GR~gR~G----~~g~~i~l~~~~ 194 (494)
-|+| +...+.||-||.-+++..= +|.+-|+.|.+ +.-.+|.|++..
T Consensus 182 ~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~ 237 (328)
T 3hgt_A 182 NFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAIN 237 (328)
T ss_dssp CTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETT
T ss_pred CCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCC
Confidence 5675 6788999999999999885 89888888863 334455565544
No 81
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=96.57 E-value=0.0057 Score=61.44 Aligned_cols=69 Identities=17% Similarity=0.212 Sum_probs=52.2
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhh------hccCCCCc
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA------ARGLDIPN 155 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~------~~GiDip~ 155 (494)
...++||.|||++.+.++++.+.+ .+.+..+||+.+..++...+. ..+|+|+|+-. ...+++..
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 162 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDK 162 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 356999999999999999988764 367888999998877666554 46799999632 22345667
Q ss_pred ccEEE
Q 011052 156 VDLII 160 (494)
Q Consensus 156 v~~VI 160 (494)
+++||
T Consensus 163 ~~~vI 167 (394)
T 1fuu_A 163 IKMFI 167 (394)
T ss_dssp CCEEE
T ss_pred CcEEE
Confidence 77777
No 82
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=96.28 E-value=0.006 Score=63.67 Aligned_cols=64 Identities=11% Similarity=0.107 Sum_probs=0.0
Q ss_pred CCcccccCCCCceEEEEecCCccccCccchhHHHHHhhhhcCcCc----------cccccEEEeecCCcceeEEec
Q 011052 275 SSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAA----------DEIGKIHIIADDRVQGAVFDL 340 (494)
Q Consensus 275 ~~rsl~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~----------~~ig~i~~~~~~~~~gs~~d~ 340 (494)
+...+...+.+...++++++. ...+++.+++..+|+...|... .-+||.++.+..+..-++++-
T Consensus 372 R~~~~~~f~~g~~~iLv~T~~--~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~ 445 (479)
T 3fmp_B 372 RAAVIERFREGKEKVLVTTNV--CARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDS 445 (479)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred HHHHHHHHHcCCCcEEEEccc--cccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcC
Confidence 333455566777888998887 6778999999999888776432 126777776654433345443
No 83
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=96.20 E-value=0.017 Score=61.21 Aligned_cols=74 Identities=19% Similarity=0.188 Sum_probs=60.5
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhh------ccCCCCcccEE
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA------RGLDIPNVDLI 159 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~------~GiDip~v~~V 159 (494)
..+.+||.+|+++.+++..+.|.. ++.+..+|++.+..++..++..+..+..+||++|+.-- .-++..++.+|
T Consensus 64 ~~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~v 143 (523)
T 1oyw_A 64 LNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLL 143 (523)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEE
T ss_pred hCCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEE
Confidence 457899999999999999999986 78899999999999999999999889999999997422 12333556666
Q ss_pred E
Q 011052 160 I 160 (494)
Q Consensus 160 I 160 (494)
|
T Consensus 144 V 144 (523)
T 1oyw_A 144 A 144 (523)
T ss_dssp E
T ss_pred E
Confidence 5
No 84
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=96.19 E-value=0.017 Score=62.33 Aligned_cols=60 Identities=13% Similarity=0.172 Sum_probs=53.5
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccc--cCCCeeEEEechh
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGF--RQGKFTVLVATDV 146 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~F--r~g~~~iLVaT~~ 146 (494)
..+.+||.+|+++.+++.++.|.. ++.+..+|++++..++..++..+ ..+..+|||+|+.
T Consensus 83 ~~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe 145 (591)
T 2v1x_A 83 SDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPE 145 (591)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHH
T ss_pred cCCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChh
Confidence 467999999999999999999986 78899999999999999888877 5678999999983
No 85
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=96.07 E-value=0.011 Score=60.35 Aligned_cols=80 Identities=14% Similarity=0.195 Sum_probs=64.2
Q ss_pred HHHhccCCcEEEEcCChhhHHHHHHHHhc----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhh----ccCCC
Q 011052 82 ITVYAKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA----RGLDI 153 (494)
Q Consensus 82 l~~~~~~~~~IVF~~t~~~~~~l~~~L~~----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~----~GiDi 153 (494)
+.....+.++||.+||++.+.++++.+.+ ++.+..+||+.+..++...++.+..+..+|+|+|+-.- .-++.
T Consensus 58 ~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~ 137 (414)
T 3oiy_A 58 LWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQ 137 (414)
T ss_dssp HHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTT
T ss_pred HHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhcc
Confidence 33334668999999999999999999986 56899999999998888888888888899999998322 12455
Q ss_pred CcccEEEe
Q 011052 154 PNVDLIIH 161 (494)
Q Consensus 154 p~v~~VI~ 161 (494)
.++++||.
T Consensus 138 ~~~~~iVi 145 (414)
T 3oiy_A 138 KRFDFVFV 145 (414)
T ss_dssp CCCSEEEE
T ss_pred ccccEEEE
Confidence 67887773
No 86
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=95.99 E-value=0.016 Score=64.48 Aligned_cols=81 Identities=21% Similarity=0.302 Sum_probs=67.8
Q ss_pred HHHHhccCCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechh-hhccCCCC
Q 011052 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-AARGLDIP 154 (494)
Q Consensus 81 ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~-~~~GiDip 154 (494)
++.....+.++||.+||+..|.++++.+.+ ++.+..+||+++..++..+++.+.+|..+|+|+|+. +...+++.
T Consensus 410 il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~ 489 (780)
T 1gm5_A 410 ILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFK 489 (780)
T ss_dssp HHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCS
T ss_pred HHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhcc
Confidence 344444568999999999999999988874 478999999999999999999999999999999973 44557888
Q ss_pred cccEEEe
Q 011052 155 NVDLIIH 161 (494)
Q Consensus 155 ~v~~VI~ 161 (494)
++.+||.
T Consensus 490 ~l~lVVI 496 (780)
T 1gm5_A 490 NLGLVII 496 (780)
T ss_dssp CCCEEEE
T ss_pred CCceEEe
Confidence 8888874
No 87
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=95.58 E-value=0.25 Score=51.63 Aligned_cols=70 Identities=13% Similarity=0.221 Sum_probs=51.6
Q ss_pred CCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhh-----hcc-C-CCCc
Q 011052 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA-----ARG-L-DIPN 155 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~-----~~G-i-Dip~ 155 (494)
..++||.|||++.+.++++.+.+ .+.+..+||+.+...+...+.. ..+|+|+|+-. ..+ + ++.+
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHIIE----DNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHHH----HCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHhc----CCCEEEECHHHHHHHHhcCccccccc
Confidence 67899999999999999888874 5778999999876655444433 57899999722 222 3 5667
Q ss_pred ccEEEe
Q 011052 156 VDLIIH 161 (494)
Q Consensus 156 v~~VI~ 161 (494)
+++||.
T Consensus 128 ~~~vVi 133 (555)
T 3tbk_A 128 FTLMIF 133 (555)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 787773
No 88
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=95.56 E-value=0.037 Score=51.98 Aligned_cols=70 Identities=16% Similarity=0.213 Sum_probs=55.4
Q ss_pred CCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechh-----hh-ccCCCCcc
Q 011052 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AA-RGLDIPNV 156 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~-----~~-~GiDip~v 156 (494)
..++||.|||++.+.++++.+.+ .+.+..++|+.+...+...+.. ..+|+|+|+- +. ..+++.++
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~~ 177 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRT 177 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTTC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCcccc
Confidence 46799999999999999888874 4678899999998887777665 6789999972 22 34577888
Q ss_pred cEEEe
Q 011052 157 DLIIH 161 (494)
Q Consensus 157 ~~VI~ 161 (494)
.+||.
T Consensus 178 ~~lVi 182 (242)
T 3fe2_A 178 TYLVL 182 (242)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 88773
No 89
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=95.45 E-value=0.086 Score=53.23 Aligned_cols=69 Identities=16% Similarity=0.138 Sum_probs=52.9
Q ss_pred CcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechh-----hh-ccCCCCccc
Q 011052 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AA-RGLDIPNVD 157 (494)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~-----~~-~GiDip~v~ 157 (494)
.++||.+||++.+.++++.+.+ .+.+..+||+.+..++...+.. ..+|+|+|+- +. ..+++..++
T Consensus 102 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~~~ 177 (417)
T 2i4i_A 102 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLER----GCHLLVATPGRLVDMMERGKIGLDFCK 177 (417)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTT----CCSEEEECHHHHHHHHHTTSBCCTTCC
T ss_pred ccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhC----CCCEEEEChHHHHHHHHcCCcChhhCc
Confidence 4799999999999999998874 4678899999988877665543 6789999972 22 235677788
Q ss_pred EEEe
Q 011052 158 LIIH 161 (494)
Q Consensus 158 ~VI~ 161 (494)
+||.
T Consensus 178 ~iVi 181 (417)
T 2i4i_A 178 YLVL 181 (417)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7773
No 90
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=95.06 E-value=0.015 Score=58.86 Aligned_cols=72 Identities=14% Similarity=0.171 Sum_probs=51.2
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechh-----hh-ccCCCCc
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AA-RGLDIPN 155 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~-----~~-~GiDip~ 155 (494)
...++||.|||++.+.++++.+.+ ...+..++++.....+.. .+..+..+|+|+|+- +. ..+++..
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~ 183 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQ---KLQMEAPHIIVGTPGRVFDMLNRRYLSPKY 183 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHH---HHTTTCCSEEEECHHHHHHHHHHTSSCSTT
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHH---HHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 456899999999999999998874 356677788876655443 334457889999962 22 2356667
Q ss_pred ccEEEe
Q 011052 156 VDLIIH 161 (494)
Q Consensus 156 v~~VI~ 161 (494)
+++||.
T Consensus 184 ~~~vVi 189 (414)
T 3eiq_A 184 IKMFVL 189 (414)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 777763
No 91
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=95.05 E-value=0.029 Score=64.87 Aligned_cols=90 Identities=14% Similarity=0.182 Sum_probs=68.3
Q ss_pred ccHHHHH-HHHHHHhccCCcEEEEcCChhhHHHHHHHHhc----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechh
Q 011052 72 TSKRTIL-SDLITVYAKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (494)
Q Consensus 72 ~~k~~~L-~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~ 146 (494)
.-|.... ..++.....+.++||.+||++.|.++++.+.+ .+.+..+||+++..++...++.++++..+|||+|+-
T Consensus 104 SGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~ 183 (1104)
T 4ddu_A 104 VGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQ 183 (1104)
T ss_dssp CCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHH
T ss_pred CcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHH
Confidence 3454432 23333345667999999999999999999986 458999999999988888888999888999999973
Q ss_pred hh-c---cCCCCcccEEEe
Q 011052 147 AA-R---GLDIPNVDLIIH 161 (494)
Q Consensus 147 ~~-~---GiDip~v~~VI~ 161 (494)
.- . -+++.++.+||.
T Consensus 184 rL~~~l~~l~~~~l~~lVi 202 (1104)
T 4ddu_A 184 FVSKNREKLSQKRFDFVFV 202 (1104)
T ss_dssp HHHHSHHHHHTSCCSEEEE
T ss_pred HHHHHHHhhcccCcCEEEE
Confidence 21 1 155677888774
No 92
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=94.91 E-value=0.00082 Score=72.30 Aligned_cols=69 Identities=16% Similarity=0.157 Sum_probs=48.1
Q ss_pred CcEEEEcCChhhHHHHHHHHhcc---------CceeeecCCCCHHHHHHHHccccCCCeeEEEechhh-----hc--cCC
Q 011052 89 GKTIVFTQTKRDADEVSLALTSI---------IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA-----AR--GLD 152 (494)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~~---------~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~-----~~--GiD 152 (494)
.++||.|||++.|.++++.+.+. +.+..++|+.........+ .....+|+|+|+-. .+ ...
T Consensus 96 ~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~~~~~~IlV~Tp~~l~~~l~~~~~~~ 172 (579)
T 3sqw_A 96 VKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKM---NKLRPNIVIATPGRLIDVLEKYSNKF 172 (579)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHH---HHHCCSEEEECHHHHHHHHHHHHHHH
T ss_pred CeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHH---hcCCCCEEEECHHHHHHHHHhccccc
Confidence 48999999999999999888741 3466778887765544333 33367899999732 22 335
Q ss_pred CCcccEEE
Q 011052 153 IPNVDLII 160 (494)
Q Consensus 153 ip~v~~VI 160 (494)
+..+++||
T Consensus 173 ~~~~~~lV 180 (579)
T 3sqw_A 173 FRFVDYKV 180 (579)
T ss_dssp CTTCCEEE
T ss_pred cccCCEEE
Confidence 66777766
No 93
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=94.90 E-value=0.26 Score=49.59 Aligned_cols=70 Identities=16% Similarity=0.248 Sum_probs=53.6
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEech-----hhhc-cCCCCc
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAAR-GLDIPN 155 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~-----~~~~-GiDip~ 155 (494)
...++||.|||++.+.++++.+.+ .+.+..++|+....++...+.. ..+|+|+|+ .+.+ .++...
T Consensus 104 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~ivv~Tp~~l~~~l~~~~~~~~~ 179 (410)
T 2j0s_A 104 RETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDY----GQHVVAGTPGRVFDMIRRRSLRTRA 179 (410)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhc----CCCEEEcCHHHHHHHHHhCCccHhh
Confidence 457999999999999999998874 3567888999888877666654 568999996 2233 356677
Q ss_pred ccEEE
Q 011052 156 VDLII 160 (494)
Q Consensus 156 v~~VI 160 (494)
+++||
T Consensus 180 ~~~vV 184 (410)
T 2j0s_A 180 IKMLV 184 (410)
T ss_dssp CCEEE
T ss_pred eeEEE
Confidence 88777
No 94
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=94.75 E-value=0.025 Score=60.16 Aligned_cols=69 Identities=14% Similarity=0.121 Sum_probs=47.9
Q ss_pred CcEEEEcCChhhHHHHHHHHhc---------cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhh-----c--cCC
Q 011052 89 GKTIVFTQTKRDADEVSLALTS---------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA-----R--GLD 152 (494)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~---------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~-----~--GiD 152 (494)
.++||.+||++.|.++++.+.+ .+.+..++|+.........+ .....+|+|+|+-.- + ...
T Consensus 147 ~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~Iiv~Tp~~l~~~l~~~~~~~ 223 (563)
T 3i5x_A 147 VKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKM---NKLRPNIVIATPGRLIDVLEKYSNKF 223 (563)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHH---HHHCCSEEEECHHHHHHHHHHHHHHH
T ss_pred eeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHH---hcCCCCEEEECcHHHHHHHHhccccc
Confidence 3899999999999999998874 13467778887765544333 333678999998321 2 234
Q ss_pred CCcccEEE
Q 011052 153 IPNVDLII 160 (494)
Q Consensus 153 ip~v~~VI 160 (494)
+..+.+||
T Consensus 224 ~~~~~~lV 231 (563)
T 3i5x_A 224 FRFVDYKV 231 (563)
T ss_dssp CTTCCEEE
T ss_pred cccceEEE
Confidence 56677766
No 95
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=94.61 E-value=0.021 Score=57.50 Aligned_cols=70 Identities=20% Similarity=0.213 Sum_probs=52.1
Q ss_pred CCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechh-----hh-ccCCCCcc
Q 011052 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AA-RGLDIPNV 156 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~-----~~-~GiDip~v 156 (494)
..++||.|||+..++++++.+.+ .+.+..++|+.........+. ...+|+|+|+- +. ...++.++
T Consensus 89 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~Ivv~T~~~l~~~~~~~~~~~~~~ 164 (400)
T 1s2m_A 89 KIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLN----ETVHILVGTPGRVLDLASRKVADLSDC 164 (400)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTT----SCCSEEEECHHHHHHHHHTTCSCCTTC
T ss_pred CccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhc----CCCCEEEEchHHHHHHHHhCCcccccC
Confidence 45899999999999999988874 467888899988766544433 36789999962 22 33567778
Q ss_pred cEEEe
Q 011052 157 DLIIH 161 (494)
Q Consensus 157 ~~VI~ 161 (494)
++||.
T Consensus 165 ~~vIi 169 (400)
T 1s2m_A 165 SLFIM 169 (400)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 88773
No 96
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=94.38 E-value=0.12 Score=47.66 Aligned_cols=70 Identities=14% Similarity=0.236 Sum_probs=47.4
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhc----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechh------hhccCCCCcc
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV------AARGLDIPNV 156 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~------~~~GiDip~v 156 (494)
...++||.+||++.+.++++.+.+ .+.+..++|+.+..++...+.. ..+|+|+|+- ....+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDISK----GVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHHHS----CCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCcCcccc
Confidence 456899999999999999998875 4678889998877666555543 5789999972 1224556666
Q ss_pred cEEE
Q 011052 157 DLII 160 (494)
Q Consensus 157 ~~VI 160 (494)
++||
T Consensus 169 ~~lV 172 (228)
T 3iuy_A 169 TYLV 172 (228)
T ss_dssp CEEE
T ss_pred eEEE
Confidence 6665
No 97
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=94.34 E-value=0.3 Score=45.86 Aligned_cols=68 Identities=18% Similarity=0.188 Sum_probs=51.4
Q ss_pred CcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhh------hccCCCCccc
Q 011052 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA------ARGLDIPNVD 157 (494)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~------~~GiDip~v~ 157 (494)
.++||.|||++.+.++++.+.+ .+.+..++|+.+..++...+.. ..+|+|+|+-. ...+++..++
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~Ivv~Tp~~l~~~l~~~~~~~~~~~ 176 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQM----GCHLLVATPGRLVDFIEKNKISLEFCK 176 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSS----CCSEEEECHHHHHHHHHTTSBCCTTCC
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCC----CCCEEEECHHHHHHHHHcCCCChhhCC
Confidence 5899999999999999988874 3567888999887766555543 67899999821 2235677788
Q ss_pred EEE
Q 011052 158 LII 160 (494)
Q Consensus 158 ~VI 160 (494)
+||
T Consensus 177 ~lV 179 (253)
T 1wrb_A 177 YIV 179 (253)
T ss_dssp EEE
T ss_pred EEE
Confidence 777
No 98
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=93.87 E-value=0.16 Score=59.02 Aligned_cols=79 Identities=15% Similarity=0.187 Sum_probs=66.1
Q ss_pred HHhccCCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEech-hhhccCCCCcc
Q 011052 83 TVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-VAARGLDIPNV 156 (494)
Q Consensus 83 ~~~~~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~-~~~~GiDip~v 156 (494)
.....+.+++|.|||+..|++.++.+.+ .+.+..+++..+..++..+++.+.+|.++|+|+|. .+...+.+.++
T Consensus 647 ~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l 726 (1151)
T 2eyq_A 647 LAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDL 726 (1151)
T ss_dssp HHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSE
T ss_pred HHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCcccccc
Confidence 3344567999999999999999998874 35688899999999999999999999999999995 55556788888
Q ss_pred cEEEe
Q 011052 157 DLIIH 161 (494)
Q Consensus 157 ~~VI~ 161 (494)
.+||.
T Consensus 727 ~lvIi 731 (1151)
T 2eyq_A 727 GLLIV 731 (1151)
T ss_dssp EEEEE
T ss_pred ceEEE
Confidence 88773
No 99
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=93.69 E-value=0.26 Score=46.44 Aligned_cols=69 Identities=19% Similarity=0.265 Sum_probs=52.2
Q ss_pred CCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechh-----hh--ccCCCCc
Q 011052 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AA--RGLDIPN 155 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~-----~~--~GiDip~ 155 (494)
..++||.|||++.+.++++.+.+ .+.+..++|+.+...+...+.. ..+|+|+|+- +. ..+++..
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~l~~ 186 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK----KPHIIIATPGRLIDHLENTKGFNLRA 186 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHT----CCSEEEECHHHHHHHHHHSTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCcCccc
Confidence 35799999999999999988763 4678899999988776665543 6789999972 11 3456667
Q ss_pred ccEEE
Q 011052 156 VDLII 160 (494)
Q Consensus 156 v~~VI 160 (494)
+++||
T Consensus 187 ~~~lV 191 (249)
T 3ber_A 187 LKYLV 191 (249)
T ss_dssp CCEEE
T ss_pred cCEEE
Confidence 77666
No 100
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=93.47 E-value=0.18 Score=45.60 Aligned_cols=70 Identities=23% Similarity=0.254 Sum_probs=52.0
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhc---cCceeeecCCCCHHHHHHHHccccCCCeeEEEechh-----h-hccCCCCccc
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----A-ARGLDIPNVD 157 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~---~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~-----~-~~GiDip~v~ 157 (494)
...++||.|||++.+.++++.+.+ .+.+..+||+.+...+...+.. ..+|+|+|+- + ...+++.+++
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALLR----GADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHHH----CCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhhC----CCCEEEECHHHHHHHHHcCCcchhhce
Confidence 346899999999999999999885 3678889998877665555543 5789999972 1 2235566777
Q ss_pred EEE
Q 011052 158 LII 160 (494)
Q Consensus 158 ~VI 160 (494)
+||
T Consensus 147 ~iV 149 (207)
T 2gxq_A 147 VAV 149 (207)
T ss_dssp EEE
T ss_pred EEE
Confidence 666
No 101
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=93.40 E-value=0.2 Score=46.52 Aligned_cols=68 Identities=16% Similarity=0.218 Sum_probs=51.2
Q ss_pred CCcEEEEcCChhhHHHHHHHHhc------cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhh------hccCCCCc
Q 011052 88 GGKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA------ARGLDIPN 155 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~------~~GiDip~ 155 (494)
..++||.|||++.++++++.+.+ .+.+..++|+.+..++...++ ..+|+|+|+-. ...+++.+
T Consensus 92 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~Iiv~Tp~~l~~~~~~~~~~~~~ 166 (230)
T 2oxc_A 92 STQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLK-----KCHIAVGSPGRIKQLIELDYLNPGS 166 (230)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTT-----SCSEEEECHHHHHHHHHTTSSCGGG
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhcc-----CCCEEEECHHHHHHHHhcCCccccc
Confidence 46899999999999999998874 367888999998877766553 47899999832 12345566
Q ss_pred ccEEE
Q 011052 156 VDLII 160 (494)
Q Consensus 156 v~~VI 160 (494)
+++||
T Consensus 167 ~~~lV 171 (230)
T 2oxc_A 167 IRLFI 171 (230)
T ss_dssp CCEEE
T ss_pred CCEEE
Confidence 66655
No 102
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=93.31 E-value=0.23 Score=45.48 Aligned_cols=69 Identities=17% Similarity=0.250 Sum_probs=51.1
Q ss_pred CcEEEEcCChhhHHHHHHHHhc------cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhh------hccCCCCcc
Q 011052 89 GKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA------ARGLDIPNV 156 (494)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~------~~GiDip~v 156 (494)
.++||.|||++.++++++.+.+ .+.+..+||+.+..++...+. ++..+|+|+|+-. ...+++.++
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~---~~~~~i~v~T~~~l~~~~~~~~~~~~~~ 159 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLK---KNCPHIVVGTPGRILALARNKSLNLKHI 159 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHH---HSCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHh---cCCCCEEEeCHHHHHHHHHhCCCCcccC
Confidence 4899999999999999888764 467889999998877665543 3456899999731 223456666
Q ss_pred cEEE
Q 011052 157 DLII 160 (494)
Q Consensus 157 ~~VI 160 (494)
++||
T Consensus 160 ~~lV 163 (220)
T 1t6n_A 160 KHFI 163 (220)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 6666
No 103
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=93.26 E-value=0.25 Score=44.60 Aligned_cols=69 Identities=19% Similarity=0.159 Sum_probs=50.4
Q ss_pred CCcEEEEcCChhhHHHHHHHHhc------cCceeeecCCCCHHHHHHHHccccCCCeeEEEechh-----hhc-cCCCCc
Q 011052 88 GGKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AAR-GLDIPN 155 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~-----~~~-GiDip~ 155 (494)
..++||.|||++.++++++.+.+ .+.+..++|+.+..+....+. ...+|+|+|+- +.. -+++.+
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~ 146 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLD----DTVHVVIATPGRILDLIKKGVAKVDH 146 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTT----SCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcC----CCCCEEEeCHHHHHHHHHcCCcCccc
Confidence 45899999999999999988863 356888999988776655443 36789999972 222 245566
Q ss_pred ccEEE
Q 011052 156 VDLII 160 (494)
Q Consensus 156 v~~VI 160 (494)
+++||
T Consensus 147 ~~~lV 151 (206)
T 1vec_A 147 VQMIV 151 (206)
T ss_dssp CCEEE
T ss_pred CCEEE
Confidence 66666
No 104
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=92.50 E-value=0.32 Score=46.22 Aligned_cols=71 Identities=15% Similarity=0.243 Sum_probs=52.8
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEech-----hhhc--cCCCC
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAAR--GLDIP 154 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~-----~~~~--GiDip 154 (494)
.+.++||.+||++.|+++++.+++ ...+..++|+.....+...+.. ..+|+|+|+ .+.. .+++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGN----GINIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcC----CCCEEEEcHHHHHHHHHccCCcccc
Confidence 356899999999999999998875 3567788999887776655544 478999996 2222 35667
Q ss_pred cccEEEe
Q 011052 155 NVDLIIH 161 (494)
Q Consensus 155 ~v~~VI~ 161 (494)
++.+||.
T Consensus 201 ~l~~lVi 207 (262)
T 3ly5_A 201 NLQCLVI 207 (262)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 7777663
No 105
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=92.06 E-value=0.27 Score=56.51 Aligned_cols=73 Identities=18% Similarity=0.311 Sum_probs=57.4
Q ss_pred ccCCcEEEEcCChhhHHHHHHHHhc-----cC----ceeeecCCCCHHHHHHHHccccCCCeeEEEechh-hhccCC-CC
Q 011052 86 AKGGKTIVFTQTKRDADEVSLALTS-----II----ASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-AARGLD-IP 154 (494)
Q Consensus 86 ~~~~~~IVF~~t~~~~~~l~~~L~~-----~~----~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~-~~~GiD-ip 154 (494)
..+.++||.+||++.|.++++.+++ .+ .+..+||+.+..++.+.++.+++ .+|+|+|+- +..-+. +.
T Consensus 97 ~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~ 174 (1054)
T 1gku_B 97 LKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELG 174 (1054)
T ss_dssp TTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSC
T ss_pred hcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhc
Confidence 4567999999999999999998874 24 78899999999998888888877 899999972 222222 55
Q ss_pred cccEEE
Q 011052 155 NVDLII 160 (494)
Q Consensus 155 ~v~~VI 160 (494)
++++||
T Consensus 175 ~l~~lV 180 (1054)
T 1gku_B 175 HFDFIF 180 (1054)
T ss_dssp CCSEEE
T ss_pred cCCEEE
Confidence 777777
No 106
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=91.70 E-value=0.68 Score=42.77 Aligned_cols=54 Identities=15% Similarity=0.207 Sum_probs=41.4
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEech
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~ 145 (494)
.+.++||.|||++.+.++++.+.+ .+.+..+||+.+.......+ ...+|+|+|+
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp 154 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTP 154 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECH
Confidence 356899999999999999998874 26788899998766555444 2578999997
No 107
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=91.42 E-value=1.1 Score=41.53 Aligned_cols=72 Identities=14% Similarity=0.198 Sum_probs=44.7
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEech-----hhhc-cCCCCc
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAAR-GLDIPN 155 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~-----~~~~-GiDip~ 155 (494)
...++||.|||++.+.++++.+.+ .+.+..++|+.+.... .+.+..+..+|+|+|+ .+.+ .+++..
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNE---MQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHH---HHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 346999999999999999998874 3567778887654433 3344556689999995 2233 356677
Q ss_pred ccEEEe
Q 011052 156 VDLIIH 161 (494)
Q Consensus 156 v~~VI~ 161 (494)
+++||.
T Consensus 174 ~~~lVi 179 (237)
T 3bor_A 174 IKMFVL 179 (237)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 887773
No 108
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=91.37 E-value=0.78 Score=41.87 Aligned_cols=84 Identities=17% Similarity=0.171 Sum_probs=49.5
Q ss_pred ccHHHH-HHHHHHHh---ccCCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEE
Q 011052 72 TSKRTI-LSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLV 142 (494)
Q Consensus 72 ~~k~~~-L~~ll~~~---~~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLV 142 (494)
..|... +..++... ....++||.|||++.+.++++.+.+ .+.+..++|+.+..++...+. ..+|+|
T Consensus 62 sGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~iiv 136 (224)
T 1qde_A 62 TGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVV 136 (224)
T ss_dssp SSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CT-----TCSEEE
T ss_pred CcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCC-----CCCEEE
Confidence 455543 33344433 2346899999999999999988864 467888999877665544332 278999
Q ss_pred echhh------hccCCCCcccEEE
Q 011052 143 ATDVA------ARGLDIPNVDLII 160 (494)
Q Consensus 143 aT~~~------~~GiDip~v~~VI 160 (494)
+|+-. ...+++..+++||
T Consensus 137 ~Tp~~l~~~~~~~~~~~~~~~~iV 160 (224)
T 1qde_A 137 GTPGRVFDNIQRRRFRTDKIKMFI 160 (224)
T ss_dssp ECHHHHHHHHHTTSSCCTTCCEEE
T ss_pred ECHHHHHHHHHhCCcchhhCcEEE
Confidence 99732 2344556666665
No 109
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=91.21 E-value=0.28 Score=44.91 Aligned_cols=69 Identities=13% Similarity=0.256 Sum_probs=46.7
Q ss_pred CCcEEEEcCChhhHHHHHHHHhc---------cCceeeecCCCCHHHHHHHHccccCCCeeEEEechh-----hhc-cCC
Q 011052 88 GGKTIVFTQTKRDADEVSLALTS---------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AAR-GLD 152 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~---------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~-----~~~-GiD 152 (494)
..++||.|||++.++++++.+.+ .+.+..++|+.+..++ .+.++ ...+|+|+|+- +.. .++
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~-~~~~Iiv~Tp~~l~~~l~~~~~~ 147 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKA---LEKLN-VQPHIVIGTPGRINDFIREQALD 147 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHT---TCCCS-SCCSEEEECHHHHHHHHHTTCCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHH---HHHcC-CCCCEEEeCHHHHHHHHHcCCCC
Confidence 46899999999999999988763 3567788888755433 22232 36789999962 222 345
Q ss_pred CCcccEEE
Q 011052 153 IPNVDLII 160 (494)
Q Consensus 153 ip~v~~VI 160 (494)
+..+++||
T Consensus 148 ~~~~~~lV 155 (219)
T 1q0u_A 148 VHTAHILV 155 (219)
T ss_dssp GGGCCEEE
T ss_pred cCcceEEE
Confidence 55666555
No 110
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=90.94 E-value=0.42 Score=50.05 Aligned_cols=70 Identities=11% Similarity=0.150 Sum_probs=48.9
Q ss_pred CCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhh-----hcc-C-CCCc
Q 011052 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA-----ARG-L-DIPN 155 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~-----~~G-i-Dip~ 155 (494)
..++||.|||++.+.++++.+.+ .+.+..+||+.+...+...+.. ..+|+|+|+-. ..+ + ++..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIE----DSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHHH----HCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhhC----CCCEEEECHHHHHHHHHhCccccccc
Confidence 57899999999999999988874 5788999999877665444433 57899999732 222 3 5677
Q ss_pred ccEEEe
Q 011052 156 VDLIIH 161 (494)
Q Consensus 156 v~~VI~ 161 (494)
+++||.
T Consensus 131 ~~~vVi 136 (556)
T 4a2p_A 131 FTLMIF 136 (556)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 887773
No 111
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=90.11 E-value=0.72 Score=45.76 Aligned_cols=71 Identities=17% Similarity=0.230 Sum_probs=53.7
Q ss_pred CCcEEEEcCChhhHHHHHHHHhc------cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhh------hccCCCCc
Q 011052 88 GGKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA------ARGLDIPN 155 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~------~~GiDip~ 155 (494)
..++||.|||++.++++++.+.+ .+.+..++|+.+..+....+. ++..+|+|+|+-. ...+++.+
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~iiv~T~~~l~~~~~~~~~~~~~ 152 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLK---KNCPHIVVGTPGRILALARNKSLNLKH 152 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHH---HSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHh---cCCCCEEEECHHHHHHHHHcCCccccc
Confidence 45899999999999999888764 467889999998877665554 3457899999732 23356778
Q ss_pred ccEEEe
Q 011052 156 VDLIIH 161 (494)
Q Consensus 156 v~~VI~ 161 (494)
+++||.
T Consensus 153 ~~~vVi 158 (391)
T 1xti_A 153 IKHFIL 158 (391)
T ss_dssp CSEEEE
T ss_pred cCEEEE
Confidence 887773
No 112
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=89.37 E-value=0.25 Score=46.15 Aligned_cols=71 Identities=18% Similarity=0.326 Sum_probs=46.9
Q ss_pred CCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechh-----hhc---cCCCC
Q 011052 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AAR---GLDIP 154 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~-----~~~---GiDip 154 (494)
+.++||.+||++.+.++++.+.+ .+.+..+|++.... ...........+|+|+|+- +.. .+++.
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~ 174 (245)
T 3dkp_A 98 GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAA---KKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLA 174 (245)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHH---TTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHH---HHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccc
Confidence 45899999999999999998875 35566666653221 1122334557889999962 212 35666
Q ss_pred cccEEEe
Q 011052 155 NVDLIIH 161 (494)
Q Consensus 155 ~v~~VI~ 161 (494)
++.+||.
T Consensus 175 ~~~~lVi 181 (245)
T 3dkp_A 175 SVEWLVV 181 (245)
T ss_dssp TCCEEEE
T ss_pred cCcEEEE
Confidence 7776663
No 113
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=88.96 E-value=0.73 Score=51.16 Aligned_cols=70 Identities=11% Similarity=0.143 Sum_probs=48.7
Q ss_pred CCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechh-----hhcc-C-CCCc
Q 011052 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AARG-L-DIPN 155 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~-----~~~G-i-Dip~ 155 (494)
..++||.|||+..+.+++..+.+ .+.+..+||+.+...+...+.. ..+|+|+|+- +..+ + ++.+
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~----~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIE----DSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHHH----TCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhhC----CCCEEEEchHHHHHHHHhcccccccc
Confidence 67999999999999999888764 5789999999877765444433 5789999973 2222 3 5667
Q ss_pred ccEEEe
Q 011052 156 VDLIIH 161 (494)
Q Consensus 156 v~~VI~ 161 (494)
+++||.
T Consensus 372 ~~~iVi 377 (797)
T 4a2q_A 372 FTLMIF 377 (797)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 788773
No 114
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=88.68 E-value=0.064 Score=53.99 Aligned_cols=65 Identities=6% Similarity=-0.001 Sum_probs=44.2
Q ss_pred CcEEEEcCChhhHHHHHHHHhc------cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhh-------ccCCCCc
Q 011052 89 GKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA-------RGLDIPN 155 (494)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~-------~GiDip~ 155 (494)
.++||.+||++.+.++++.+.+ .+.+...+++.... .......+|+|+|+-.- ..+++.+
T Consensus 96 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~ 168 (412)
T 3fht_A 96 PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLE-------RGQKISEQIVIGTPGTVLDWCSKLKFIDPKK 168 (412)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCC-------TTCCCCCSEEEECHHHHHHHHTTSCSSCGGG
T ss_pred CCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchh-------hhhcCCCCEEEECchHHHHHHHhcCCcChhh
Confidence 4899999999999999888764 24556666654321 12234568999997321 3456677
Q ss_pred ccEEE
Q 011052 156 VDLII 160 (494)
Q Consensus 156 v~~VI 160 (494)
+++||
T Consensus 169 ~~~iV 173 (412)
T 3fht_A 169 IKVFV 173 (412)
T ss_dssp CCEEE
T ss_pred CcEEE
Confidence 88877
No 115
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=88.64 E-value=1.5 Score=42.16 Aligned_cols=69 Identities=17% Similarity=0.262 Sum_probs=52.0
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhh-----h-ccCCCCc
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA-----A-RGLDIPN 155 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~-----~-~GiDip~ 155 (494)
...++||.||+++.++++++.+.+ ...+..+||+.+..++...+. ..+|+|+|+-. . .-+++.+
T Consensus 55 ~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 129 (337)
T 2z0m_A 55 LGMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR-----NADIVVATPGRLLDLWSKGVIDLSS 129 (337)
T ss_dssp HTCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHT-----TCSEEEECHHHHHHHHHTTSCCGGG
T ss_pred hcCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcC-----CCCEEEECHHHHHHHHHcCCcchhh
Confidence 367999999999999999999874 357888999998877655543 36799999732 2 2345677
Q ss_pred ccEEE
Q 011052 156 VDLII 160 (494)
Q Consensus 156 v~~VI 160 (494)
+++||
T Consensus 130 ~~~iV 134 (337)
T 2z0m_A 130 FEIVI 134 (337)
T ss_dssp CSEEE
T ss_pred CcEEE
Confidence 77776
No 116
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=88.11 E-value=1.7 Score=43.86 Aligned_cols=69 Identities=25% Similarity=0.379 Sum_probs=53.5
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhcc--C---ceeeecCCCCHHHHHHHHccccCCCeeEEEechhhh------ccCCCCc
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTSI--I---ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA------RGLDIPN 155 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~~--~---~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~------~GiDip~ 155 (494)
...++||.||++..+.+.++.+.+. + .+..+||+....++..... ..+|+|+|.-.- .-+...+
T Consensus 51 ~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~~ivv~T~~~l~~~~~~~~~~~~~ 125 (494)
T 1wp9_A 51 YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RAKVIVATPQTIENDLLAGRISLED 125 (494)
T ss_dssp SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSCCTTS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CCCEEEecHHHHHHHHhcCCcchhh
Confidence 5689999999999999999998863 3 7889999999887766554 467999996321 2356677
Q ss_pred ccEEE
Q 011052 156 VDLII 160 (494)
Q Consensus 156 v~~VI 160 (494)
+++||
T Consensus 126 ~~~vI 130 (494)
T 1wp9_A 126 VSLIV 130 (494)
T ss_dssp CSEEE
T ss_pred ceEEE
Confidence 88777
No 117
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=86.37 E-value=3 Score=40.59 Aligned_cols=69 Identities=22% Similarity=0.262 Sum_probs=51.6
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhh------hccCCCCc
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA------ARGLDIPN 155 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~------~~GiDip~ 155 (494)
+..++||.|||+..++++++.+.+ .+.+..++|+.........+. ..+|+|+|+-. ...+++.+
T Consensus 73 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----~~~iiv~T~~~l~~~~~~~~~~~~~ 147 (367)
T 1hv8_A 73 NGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-----NANIVVGTPGRILDHINRGTLNLKN 147 (367)
T ss_dssp SSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-----TCSEEEECHHHHHHHHHTTCSCTTS
T ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-----CCCEEEecHHHHHHHHHcCCccccc
Confidence 356899999999999999998874 356788899988776655554 46799999732 12355677
Q ss_pred ccEEE
Q 011052 156 VDLII 160 (494)
Q Consensus 156 v~~VI 160 (494)
+++||
T Consensus 148 ~~~iI 152 (367)
T 1hv8_A 148 VKYFI 152 (367)
T ss_dssp CCEEE
T ss_pred CCEEE
Confidence 77777
No 118
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=85.11 E-value=1.3 Score=42.86 Aligned_cols=66 Identities=6% Similarity=0.021 Sum_probs=46.6
Q ss_pred CcEEEEcCChhhHHHHHHHHhc------cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhh------h-ccCCCCc
Q 011052 89 GKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA------A-RGLDIPN 155 (494)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~------~-~GiDip~ 155 (494)
.++||.|||++.|.+++..+.. .+.+..++++.....+ .....+|||+|+-. . ..+++.+
T Consensus 163 ~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~TP~~l~~~l~~~~~~~l~~ 235 (300)
T 3fmo_B 163 PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDPKK 235 (300)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTTCCCCGGG
T ss_pred ceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEEEECHHHHHHHHHhcCCCChhh
Confidence 3799999999999999888763 2456677776543221 13456899999832 1 3577888
Q ss_pred ccEEEe
Q 011052 156 VDLIIH 161 (494)
Q Consensus 156 v~~VI~ 161 (494)
+.+||.
T Consensus 236 l~~lVl 241 (300)
T 3fmo_B 236 IKVFVL 241 (300)
T ss_dssp CSEEEE
T ss_pred ceEEEE
Confidence 888774
No 119
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=83.81 E-value=1.8 Score=48.09 Aligned_cols=53 Identities=9% Similarity=-0.019 Sum_probs=44.0
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEech
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~ 145 (494)
.+.+++|.|+|++.|.++++.+.. ++.+.++.|+++..+|.... .++|+|+|+
T Consensus 114 ~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTp 171 (853)
T 2fsf_A 114 TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTN 171 (853)
T ss_dssp TSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEH
T ss_pred cCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECC
Confidence 457899999999999999988763 47899999999987665543 478999998
No 120
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=83.40 E-value=1.2 Score=50.56 Aligned_cols=69 Identities=12% Similarity=0.145 Sum_probs=47.4
Q ss_pred CCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechh-----hhcc-C-CCCc
Q 011052 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AARG-L-DIPN 155 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~-----~~~G-i-Dip~ 155 (494)
..++||.|||+..+.+++..+.+ .+.+..+||+.+...+...+.. ..+|+|+|+- +..+ + .+.+
T Consensus 296 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~~----~~~IvI~Tp~~L~~~l~~~~~~~l~~ 371 (936)
T 4a2w_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIE----DSDIIVVTPQILVNSFEDGTLTSLSI 371 (936)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHHH----HCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhcc----CCCEEEecHHHHHHHHHcCccccccC
Confidence 57899999999999999888874 5789999999876654444333 5789999972 2222 3 5567
Q ss_pred ccEEE
Q 011052 156 VDLII 160 (494)
Q Consensus 156 v~~VI 160 (494)
+++||
T Consensus 372 ~~liV 376 (936)
T 4a2w_A 372 FTLMI 376 (936)
T ss_dssp CSEEE
T ss_pred CCEEE
Confidence 78777
No 121
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=83.33 E-value=0.65 Score=41.89 Aligned_cols=55 Identities=15% Similarity=0.149 Sum_probs=36.2
Q ss_pred CCcEEEEcCChhhHHH-HHHHHhc----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechh
Q 011052 88 GGKTIVFTQTKRDADE-VSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~-l~~~L~~----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~ 146 (494)
..++||+||++..+++ +.+.+.. .+.+..++|+.....+...+.. ..+|+|+|+-
T Consensus 82 ~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~----~~~i~v~T~~ 141 (216)
T 3b6e_A 82 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVVK----SCDIIISTAQ 141 (216)
T ss_dssp CCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHHH----HCSEEEEEHH
T ss_pred CCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhcc----CCCEEEECHH
Confidence 5799999999999888 6555553 4678888887654332222222 5779999973
No 122
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=82.74 E-value=2.2 Score=47.32 Aligned_cols=53 Identities=11% Similarity=0.072 Sum_probs=44.3
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEech
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~ 145 (494)
.+..++|.|+|++.|.++++.+.. ++.+.++.|+++..+|.... .++|+|+|+
T Consensus 123 ~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTp 180 (844)
T 1tf5_A 123 TGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTN 180 (844)
T ss_dssp TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEH
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECc
Confidence 457899999999999999988763 57899999999988776543 478999997
No 123
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=81.61 E-value=1.8 Score=46.83 Aligned_cols=69 Identities=12% Similarity=0.227 Sum_probs=50.0
Q ss_pred CcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechh-----hhcc-C-CCCcc
Q 011052 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AARG-L-DIPNV 156 (494)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~-----~~~G-i-Dip~v 156 (494)
.++||.+||+..+.+.++.+.+ ++.+..+||+.+...+...+.. ..+|+|+|+- +..+ + ++.++
T Consensus 62 ~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~----~~~Iiv~Tp~~L~~~l~~~~~~~l~~~ 137 (696)
T 2ykg_A 62 GKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIVE----NNDIIILTPQILVNNLKKGTIPSLSIF 137 (696)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHHH----TCSEEEECHHHHHHHHHTTSSCCGGGC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHhcc----CCCEEEECHHHHHHHHhcCcccccccc
Confidence 7899999999999999888874 4778899999865443333322 5789999972 2222 3 56777
Q ss_pred cEEEe
Q 011052 157 DLIIH 161 (494)
Q Consensus 157 ~~VI~ 161 (494)
++||.
T Consensus 138 ~~vVi 142 (696)
T 2ykg_A 138 TLMIF 142 (696)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 87773
No 124
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=78.66 E-value=3.8 Score=45.72 Aligned_cols=58 Identities=10% Similarity=0.092 Sum_probs=46.4
Q ss_pred HHHHhccCCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEech
Q 011052 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (494)
Q Consensus 81 ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~ 145 (494)
++..+ .+..++|.|+|+..|.+.++.+.. ++.+.++.|+++..+|.... .++|+++|+
T Consensus 146 ~l~aL-~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTp 208 (922)
T 1nkt_A 146 YLNAL-AGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NADITYGTN 208 (922)
T ss_dssp HHHHT-TTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEH
T ss_pred HHHHH-hCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECc
Confidence 34443 457899999999999999888763 57899999999988776554 368999997
No 125
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=77.71 E-value=3.7 Score=45.90 Aligned_cols=54 Identities=13% Similarity=0.049 Sum_probs=45.2
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechh
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~ 146 (494)
.+.+++|.|+|+..|.+.++.+.. ++.+.++.|+++..+|.... .++|+|+|+-
T Consensus 119 ~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay------~~DIvyGTpg 177 (997)
T 2ipc_A 119 TGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAY------LADVTYVTNS 177 (997)
T ss_dssp TCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHH------TSSEEEEEHH
T ss_pred hCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECch
Confidence 457899999999999999988863 47899999999988777665 3789999973
No 126
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=76.31 E-value=41 Score=34.26 Aligned_cols=60 Identities=15% Similarity=0.067 Sum_probs=34.8
Q ss_pred ceEEEEecCCccccCccchhHHHHHhhhhcCcCccccccEEEeecC----CcceeEEec-CHHHHHHHHhhcCC
Q 011052 286 WVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADD----RVQGAVFDL-PEEIAKELLNKQIP 354 (494)
Q Consensus 286 ~~t~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~ig~i~~~~~~----~~~gs~~d~-~~~~~~~~~~~~~~ 354 (494)
..+|+|..- ...++..+|..++...+. |-.|.|..+. ....+||+. ..+.|..+|+.++.
T Consensus 102 ~~~lfV~nL----~~~~te~~L~~~F~~~G~-----I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng 166 (437)
T 3pgw_S 102 FKTLFVARV----NYDTTESKLRREFEVYGP-----IKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADG 166 (437)
T ss_pred CCEEEEeCC----CCCCCHHHHHHHHHHcCC-----eeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCC
Confidence 457777532 234778899999987765 3345554331 011256666 45566777766543
No 127
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=74.73 E-value=4.7 Score=43.93 Aligned_cols=68 Identities=22% Similarity=0.361 Sum_probs=49.8
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhc----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechh-----hhccCC-CCcc
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AARGLD-IPNV 156 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~-----~~~GiD-ip~v 156 (494)
.+.++|+.+|++..|.++++.+++ ++.+..+||+.+...+. .+..+|+|+|+- +..... +.++
T Consensus 67 ~~~~~l~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~~-------~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~ 139 (720)
T 2zj8_A 67 QGGKAVYIVPLKALAEEKFQEFQDWEKIGLRVAMATGDYDSKDEW-------LGKYDIIIATAEKFDSLLRHGSSWIKDV 139 (720)
T ss_dssp HCSEEEEECSSGGGHHHHHHHTGGGGGGTCCEEEECSCSSCCCGG-------GGGCSEEEECHHHHHHHHHHTCTTGGGE
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHHHHhcCCEEEEecCCCCccccc-------cCCCCEEEECHHHHHHHHHcChhhhhcC
Confidence 468999999999999999999863 46888999987654431 136789999982 222222 5677
Q ss_pred cEEEe
Q 011052 157 DLIIH 161 (494)
Q Consensus 157 ~~VI~ 161 (494)
++||.
T Consensus 140 ~~vIi 144 (720)
T 2zj8_A 140 KILVA 144 (720)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 87773
No 128
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=74.61 E-value=4.7 Score=46.47 Aligned_cols=68 Identities=19% Similarity=0.170 Sum_probs=50.6
Q ss_pred HHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEech-----hhhccC-CCC
Q 011052 82 ITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARGL-DIP 154 (494)
Q Consensus 82 l~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~-----~~~~Gi-Dip 154 (494)
+.....+.++||.+||+..+.+++..+.+ .-.+..++|+++ .+...+|+|+|+ .+.++- .+.
T Consensus 221 ~~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~-----------~~~~~~IlV~Tpe~L~~~L~~~~~~l~ 289 (1108)
T 3l9o_A 221 AQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDIT-----------INPDAGCLVMTTEILRSMLYRGSEVMR 289 (1108)
T ss_dssp HHHHHTTCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCB-----------CCCSCSEEEEEHHHHHHHHHHCSSHHH
T ss_pred HHHHhcCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCccc-----------cCCCCCEEEeChHHHHHHHHcCccccc
Confidence 33344578999999999999999999986 336788999876 234688999995 444443 356
Q ss_pred cccEEE
Q 011052 155 NVDLII 160 (494)
Q Consensus 155 ~v~~VI 160 (494)
++.+||
T Consensus 290 ~l~lVV 295 (1108)
T 3l9o_A 290 EVAWVI 295 (1108)
T ss_dssp HEEEEE
T ss_pred cCCEEE
Confidence 778777
No 129
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=74.06 E-value=31 Score=27.84 Aligned_cols=55 Identities=18% Similarity=0.244 Sum_probs=40.7
Q ss_pred EEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEech
Q 011052 91 TIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (494)
Q Consensus 91 ~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~ 145 (494)
.+||...-+-..++...+++ ++.+..|+++-....|.+.++.|.+...++--..|
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvdvrtved 60 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDVRTVED 60 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEEEECCS
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCceeeecc
Confidence 35666666666677666664 78888999998888888888888877666554444
No 130
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=73.24 E-value=1.3 Score=47.90 Aligned_cols=68 Identities=18% Similarity=0.258 Sum_probs=47.4
Q ss_pred CcEEEEcCChhhHHHH-HHHHhc----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhh------------ccC
Q 011052 89 GKTIVFTQTKRDADEV-SLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA------------RGL 151 (494)
Q Consensus 89 ~~~IVF~~t~~~~~~l-~~~L~~----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~------------~Gi 151 (494)
.++||.+|++..+.+. ++.+.+ .+.+..+||+.+..++...+. +..+|||+|+-.- ..+
T Consensus 57 ~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~ 132 (699)
T 4gl2_A 57 GKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGEDAGV 132 (699)
T ss_dssp CCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCCHHHHH----HSCSEEEEEHHHHHHHTC--------CC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHHHhhh----cCCCEEEECHHHHHHHHhccccccccce
Confidence 7899999999999999 888875 278999999987665444443 3688999997322 234
Q ss_pred CCCcccEEE
Q 011052 152 DIPNVDLII 160 (494)
Q Consensus 152 Dip~v~~VI 160 (494)
.+..+++||
T Consensus 133 ~~~~~~lvV 141 (699)
T 4gl2_A 133 QLSDFSLII 141 (699)
T ss_dssp CGGGCSEEE
T ss_pred ecccCcEEE
Confidence 667788877
No 131
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=71.50 E-value=5.4 Score=41.22 Aligned_cols=67 Identities=12% Similarity=0.187 Sum_probs=48.8
Q ss_pred CCcEEEEcCChhhHHHHHHHHhcc-----CceeeecCCCCHHHHHHHHccccCCCeeEEEechhhh-cc--CCCCcccEE
Q 011052 88 GGKTIVFTQTKRDADEVSLALTSI-----IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA-RG--LDIPNVDLI 159 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~~-----~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~-~G--iDip~v~~V 159 (494)
..++||.|||+..+++.++.+.+. ..+..+|++.+..++ ..+..+|+|+|.-.- .- ..+.++.+|
T Consensus 157 ~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------~~~~~~I~i~T~~~l~~~~~~~~~~~~li 229 (510)
T 2oca_A 157 EGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDK-------YKNDAPVVVGTWQTVVKQPKEWFSQFGMM 229 (510)
T ss_dssp SSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECGGGCCTTGG-------GCTTCSEEEEEHHHHTTSCGGGGGGEEEE
T ss_pred CCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEecCCccccc-------cccCCcEEEEeHHHHhhchhhhhhcCCEE
Confidence 349999999999999999999752 367889998776554 345788999997422 22 335667776
Q ss_pred Ee
Q 011052 160 IH 161 (494)
Q Consensus 160 I~ 161 (494)
|.
T Consensus 230 Ii 231 (510)
T 2oca_A 230 MN 231 (510)
T ss_dssp EE
T ss_pred EE
Confidence 63
No 132
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=70.20 E-value=7.2 Score=36.10 Aligned_cols=63 Identities=11% Similarity=0.113 Sum_probs=36.4
Q ss_pred CceEEEEecCCccccCccchhHHHHHhhhhcCcCccccccEEEeecC-C---cceeEEec-CHHHHHHHHhhcCC
Q 011052 285 GWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADD-R---VQGAVFDL-PEEIAKELLNKQIP 354 (494)
Q Consensus 285 ~~~t~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~ig~i~~~~~~-~---~~gs~~d~-~~~~~~~~~~~~~~ 354 (494)
...+|+|..- ...++..+|..++...+. .+|-.+.|..+. + .-.+||+. ..+.|+.+|+.+..
T Consensus 67 ~~~~lfVgnL----~~~~te~~L~~~F~~~G~---~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng 134 (229)
T 3q2s_C 67 KRIALYIGNL----TWWTTDEDLTEAVHSLGV---NDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPK 134 (229)
T ss_dssp --CEEEEESC----CTTCCHHHHHHHHHTTTC---CCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTT
T ss_pred CccEEEEeCC----CCCCCHHHHHHHHHHHCC---cceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCC
Confidence 3557777532 234678899999887652 135566665541 1 11257766 45577888876543
No 133
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=69.90 E-value=5.4 Score=43.33 Aligned_cols=82 Identities=17% Similarity=0.232 Sum_probs=55.3
Q ss_pred cHHHHH-HHHHHHhccCCcEEEEcCChhhHHHHHHHHhc----cCceeeecCCCCHHHHHHHHccccCCCeeEEEech--
Q 011052 73 SKRTIL-SDLITVYAKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-- 145 (494)
Q Consensus 73 ~k~~~L-~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~-- 145 (494)
-|.... ..++.....+.++|+.+|++..|.++++.+++ ++.+..++|+....++ ..+..+|+|+|+
T Consensus 52 GKT~~~~l~il~~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~-------~~~~~~Iiv~Tpe~ 124 (702)
T 2p6r_A 52 GKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDE-------HLGDCDIIVTTSEK 124 (702)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEECSSCBCCSS-------CSTTCSEEEEEHHH
T ss_pred HHHHHHHHHHHHHHHhCCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEEeCCCCcchh-------hccCCCEEEECHHH
Confidence 454332 23334444568999999999999999999853 4678889998765432 123788999997
Q ss_pred ---hhhccCC-CCcccEEEe
Q 011052 146 ---VAARGLD-IPNVDLIIH 161 (494)
Q Consensus 146 ---~~~~GiD-ip~v~~VI~ 161 (494)
.+..... +.++.+||.
T Consensus 125 l~~~l~~~~~~l~~~~~vIi 144 (702)
T 2p6r_A 125 ADSLIRNRASWIKAVSCLVV 144 (702)
T ss_dssp HHHHHHTTCSGGGGCCEEEE
T ss_pred HHHHHHcChhHHhhcCEEEE
Confidence 2333333 667888773
No 134
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=67.55 E-value=9.5 Score=43.40 Aligned_cols=65 Identities=20% Similarity=0.179 Sum_probs=47.8
Q ss_pred hccCCcEEEEcCChhhHHHHHHHHhc---cCceeeecCCCCHHHHHHHHccccCCCeeEEEechh-----hhcc-CCCCc
Q 011052 85 YAKGGKTIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AARG-LDIPN 155 (494)
Q Consensus 85 ~~~~~~~IVF~~t~~~~~~l~~~L~~---~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~-----~~~G-iDip~ 155 (494)
...+.++||.+|++..+.++++.+.+ .+.+..+||+.+ .++..+|+|+|+- +.++ ..+.+
T Consensus 79 ~~~g~~vlvl~PtraLa~Q~~~~l~~~~~~~~v~~l~G~~~-----------~~~~~~IlV~Tpe~L~~~l~~~~~~l~~ 147 (997)
T 4a4z_A 79 HRNMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLITGDVQ-----------INPDANCLIMTTEILRSMLYRGADLIRD 147 (997)
T ss_dssp HHTTCEEEEEESCGGGHHHHHHHHHTTC--CCEEEECSSCE-----------ECTTSSEEEEEHHHHHHHHHHTCSGGGG
T ss_pred HhcCCeEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEeCCCc-----------cCCCCCEEEECHHHHHHHHHhCchhhcC
Confidence 34567899999999999999999986 457889999874 2346789999973 2222 24566
Q ss_pred ccEEE
Q 011052 156 VDLII 160 (494)
Q Consensus 156 v~~VI 160 (494)
+.+||
T Consensus 148 l~lvV 152 (997)
T 4a4z_A 148 VEFVI 152 (997)
T ss_dssp EEEEE
T ss_pred CCEEE
Confidence 77766
No 135
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=70.47 E-value=1.1 Score=39.20 Aligned_cols=53 Identities=15% Similarity=0.205 Sum_probs=35.2
Q ss_pred cccccCCCCceEEEEecCCccccCccchhHHHHHhhhhcCcCccc----cccEEEeecC
Q 011052 277 RSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADD 331 (494)
Q Consensus 277 rsl~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~ 331 (494)
..+...+.+...++++++. ...+++..++..+|+...+....+ +|++.+....
T Consensus 71 ~~~~~f~~g~~~vLvaT~~--~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~ 127 (170)
T 2yjt_D 71 EAIKRLTEGRVNVLVATDV--AARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRK 127 (170)
Confidence 3344455666778888876 567788888888888776654433 6777766543
No 136
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=66.98 E-value=22 Score=30.13 Aligned_cols=60 Identities=13% Similarity=0.020 Sum_probs=36.1
Q ss_pred ceEEEEecCCccccCccchhHHHHHhhhhcCcCccccccEEEeecCC----cceeEEec-CHHHHHHHHhhcCC
Q 011052 286 WVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDR----VQGAVFDL-PEEIAKELLNKQIP 354 (494)
Q Consensus 286 ~~t~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~ig~i~~~~~~~----~~gs~~d~-~~~~~~~~~~~~~~ 354 (494)
..+|+|..- ...++..+|..++...+. |-.+.+..+.. ..-+||+. ..+.|+.+++.+..
T Consensus 39 ~~~l~V~nl----p~~~t~~~l~~~F~~~G~-----i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g 103 (156)
T 1h2v_Z 39 SCTLYVGNL----SFYTTEEQIYELFSKSGD-----IKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYING 103 (156)
T ss_dssp CCEEEEESC----CTTCCHHHHHHHHGGGSC-----EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTT
T ss_pred CCEEEEeCC----CCCCCHHHHHHHHHhcCC-----eEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 457777522 234678899999887654 44566644311 11256766 45677888876543
No 137
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=64.83 E-value=1.9 Score=43.06 Aligned_cols=9 Identities=11% Similarity=0.065 Sum_probs=4.7
Q ss_pred CHHHHHHHH
Q 011052 256 GTDALAAAL 264 (494)
Q Consensus 256 ~~~~l~aal 264 (494)
.+..+|+|+
T Consensus 192 ~Ps~IAaAA 200 (358)
T 2pk2_A 192 TPPVVACVC 200 (358)
T ss_dssp CHHHHTTTT
T ss_pred CHHHHHHHH
Confidence 455555543
No 138
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=63.20 E-value=13 Score=42.47 Aligned_cols=67 Identities=19% Similarity=0.159 Sum_probs=49.2
Q ss_pred HHhccCCcEEEEcCChhhHHHHHHHHhcc-CceeeecCCCCHHHHHHHHccccCCCeeEEEech-----hhhcc-CCCCc
Q 011052 83 TVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARG-LDIPN 155 (494)
Q Consensus 83 ~~~~~~~~~IVF~~t~~~~~~l~~~L~~~-~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~-----~~~~G-iDip~ 155 (494)
.....+.++||.+||+..+.+.+..+.+. -.+..++|+.+.. ...+|+|+|+ .+.++ ..+.+
T Consensus 124 ~~l~~g~rvL~l~PtkaLa~Q~~~~l~~~~~~vglltGd~~~~-----------~~~~IvV~Tpe~L~~~L~~~~~~l~~ 192 (1010)
T 2xgj_A 124 QSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITIN-----------PDAGCLVMTTEILRSMLYRGSEVMRE 192 (1010)
T ss_dssp HHHHTTCEEEEEESSHHHHHHHHHHHHHHHSCEEEECSSCEEC-----------TTCSEEEEEHHHHHHHHHHTCTTGGG
T ss_pred HHhccCCeEEEECChHHHHHHHHHHHHHHhCCEEEEeCCCccC-----------CCCCEEEEcHHHHHHHHHcCcchhhc
Confidence 33345689999999999999999999862 3677889987532 2567999997 23333 45677
Q ss_pred ccEEE
Q 011052 156 VDLII 160 (494)
Q Consensus 156 v~~VI 160 (494)
+.+||
T Consensus 193 l~lVV 197 (1010)
T 2xgj_A 193 VAWVI 197 (1010)
T ss_dssp EEEEE
T ss_pred CCEEE
Confidence 88777
No 139
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=63.14 E-value=17 Score=35.47 Aligned_cols=67 Identities=13% Similarity=0.164 Sum_probs=46.1
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhh------hccCCCCc
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA------ARGLDIPN 155 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~------~~GiDip~ 155 (494)
...++||.|||++.++++++.+.+ .+.+..++++... .......+|+|+|+-. ...+++.+
T Consensus 74 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~ 145 (395)
T 3pey_A 74 ASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFE--------KNKQINAQVIVGTPGTVLDLMRRKLMQLQK 145 (395)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSC--------TTSCBCCSEEEECHHHHHHHHHTTCBCCTT
T ss_pred CCccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchh--------hhccCCCCEEEEcHHHHHHHHHcCCccccc
Confidence 356899999999999999998874 2456666665321 1122367899999732 33456778
Q ss_pred ccEEEe
Q 011052 156 VDLIIH 161 (494)
Q Consensus 156 v~~VI~ 161 (494)
+++||.
T Consensus 146 ~~~iIi 151 (395)
T 3pey_A 146 IKIFVL 151 (395)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888773
No 140
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=62.94 E-value=59 Score=28.17 Aligned_cols=113 Identities=12% Similarity=0.208 Sum_probs=62.8
Q ss_pred ChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHHHHHHh-ccCCcEEEEcCChhhHHHHHHHHh
Q 011052 31 PSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALT 109 (494)
Q Consensus 31 p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~-~~~~~~IVF~~t~~~~~~l~~~L~ 109 (494)
+.+|.+++..++.+...+..... . -..+.. .......+-.+.+.+.+... .....+.|.|++...+..+.+.|.
T Consensus 8 t~~Il~~An~li~~~~~~~~~~~--~--G~~p~~-~~~~~~~~e~~~i~~~I~~~~~g~~~iAVL~r~~~~~~~l~~~L~ 82 (174)
T 3dmn_A 8 TQQITDFTKEILVNGEAVTAFDR--Q--GDLPNV-VVTPNFEAGVDQVVDQLAMNDSERDTTAIIGKSLAECEALTKALK 82 (174)
T ss_dssp CHHHHHHHHTTSCC--------C--C--CCCCEE-EEESSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCCcccCCCC--C--CCCCEE-EEeCCHHHHHHHHHHHHHHhccCCCcEEEEecCHHHHHHHHHHHH
Confidence 56777777777754332221100 1 111222 12222223333333333322 134678999999999999999998
Q ss_pred c-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEecC
Q 011052 110 S-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYE 163 (494)
Q Consensus 110 ~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~~~ 163 (494)
. ++.+..+..+-. .|. -.|.|.|--.+.|+-+ ++||.++
T Consensus 83 ~~gi~~~~l~~~~~---------~~~---~~v~v~t~~~~KGlEf---~~V~~~~ 122 (174)
T 3dmn_A 83 ARGEQVTLIQTENQ---------RLA---PGVIVVPSFLAKGLEF---DAVIVWN 122 (174)
T ss_dssp TTTCCEEECSSCC----------CCC---SSEEEEEGGGCTTCCE---EEEEEET
T ss_pred HcCCcceeeccccc---------ccC---CCeEEEEccccCCcCC---CEEEEec
Confidence 6 577766665421 122 3589999999999987 4455444
No 141
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=62.58 E-value=6.4 Score=31.56 Aligned_cols=44 Identities=11% Similarity=0.108 Sum_probs=34.1
Q ss_pred HHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCC
Q 011052 79 SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDIS 122 (494)
Q Consensus 79 ~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~ 122 (494)
...+..+.++.++||||.+-..+...+..|.. ++.+..|.|++.
T Consensus 46 ~~~~~~l~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 46 REKWKILERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp HHHGGGSCTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred HHHHHhCCCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 33344445667999999998888889999986 678889999864
No 142
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=61.88 E-value=13 Score=40.24 Aligned_cols=66 Identities=20% Similarity=0.093 Sum_probs=48.1
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhc--cCceeeecCCCCHHHHHHHHccccCCCeeEEEechh---hhccCCCCcccEEEe
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTS--IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV---AARGLDIPNVDLIIH 161 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~--~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~---~~~GiDip~v~~VI~ 161 (494)
.+.++||.+||++.|.++++.+.+ +..+...+|+.. ..+..+|+|+|+- ....+++.++++||.
T Consensus 256 ~g~~vLVl~PTReLA~Qia~~l~~~~g~~vg~~vG~~~-----------~~~~~~IlV~TPGrLl~~~~l~l~~l~~lVl 324 (666)
T 3o8b_A 256 QGYKVLVLNPSVAATLGFGAYMSKAHGIDPNIRTGVRT-----------ITTGAPVTYSTYGKFLADGGCSGGAYDIIIC 324 (666)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSSCE-----------ECCCCSEEEEEHHHHHHTTSCCTTSCSEEEE
T ss_pred CCCeEEEEcchHHHHHHHHHHHHHHhCCCeeEEECcEe-----------ccCCCCEEEECcHHHHhCCCcccCcccEEEE
Confidence 456999999999999999988865 345556666643 3557899999983 334466777888875
Q ss_pred cC
Q 011052 162 YE 163 (494)
Q Consensus 162 ~~ 163 (494)
=+
T Consensus 325 DE 326 (666)
T 3o8b_A 325 DE 326 (666)
T ss_dssp TT
T ss_pred cc
Confidence 33
No 143
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=60.40 E-value=9.8 Score=41.30 Aligned_cols=67 Identities=16% Similarity=0.284 Sum_probs=49.1
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhc----cCceeeecCCCCHHHHHHHHccccCCCeeEEEech-----hhhccCC-CCcc
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARGLD-IPNV 156 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~-----~~~~GiD-ip~v 156 (494)
.+.++||.+|++..|.++++.++. ++.+..++|+....++ .+ +..+|+|+|+ .+..... +.++
T Consensus 74 ~~~~il~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~-----~~--~~~~Iiv~Tpe~l~~~~~~~~~~l~~~ 146 (715)
T 2va8_A 74 NGGKAIYVTPLRALTNEKYLTFKDWELIGFKVAMTSGDYDTDDA-----WL--KNYDIIITTYEKLDSLWRHRPEWLNEV 146 (715)
T ss_dssp SCSEEEEECSCHHHHHHHHHHHGGGGGGTCCEEECCSCSSSCCG-----GG--GGCSEEEECHHHHHHHHHHCCGGGGGE
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCchh-----hc--CCCCEEEEcHHHHHHHHhCChhHhhcc
Confidence 468999999999999999998853 4678889998765442 11 2678999998 2333333 5678
Q ss_pred cEEE
Q 011052 157 DLII 160 (494)
Q Consensus 157 ~~VI 160 (494)
++||
T Consensus 147 ~~vI 150 (715)
T 2va8_A 147 NYFV 150 (715)
T ss_dssp EEEE
T ss_pred CEEE
Confidence 8877
No 144
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=59.20 E-value=19 Score=33.93 Aligned_cols=66 Identities=12% Similarity=0.135 Sum_probs=42.6
Q ss_pred CCcEEEEcCChhhHHHHHHHHhcc-----CceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccC---CCCcccEE
Q 011052 88 GGKTIVFTQTKRDADEVSLALTSI-----IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGL---DIPNVDLI 159 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~~-----~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~Gi---Dip~v~~V 159 (494)
..++||.|||++.+++.++.+.+. ..+..++++....+ -.....+|+|+|.-.-... .+..+++|
T Consensus 157 ~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~v 229 (282)
T 1rif_A 157 EGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDD-------KYKNDAPVVVGTWQTVVKQPKEWFSQFGMM 229 (282)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTTCSSTT-------CCCTTCSEEEECHHHHTTSCGGGGGGEEEE
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEeCCCcchh-------hhccCCcEEEEchHHHHhhHHHHHhhCCEE
Confidence 349999999999999999998752 24566777654322 1124678999997322111 23455655
Q ss_pred E
Q 011052 160 I 160 (494)
Q Consensus 160 I 160 (494)
|
T Consensus 230 I 230 (282)
T 1rif_A 230 M 230 (282)
T ss_dssp E
T ss_pred E
Confidence 5
No 145
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=58.63 E-value=11 Score=30.89 Aligned_cols=41 Identities=12% Similarity=0.156 Sum_probs=30.9
Q ss_pred HHHhccC-CcEEEEc-CChhhHHHHHHHHhc-cCceeeecCCCC
Q 011052 82 ITVYAKG-GKTIVFT-QTKRDADEVSLALTS-IIASEALHGDIS 122 (494)
Q Consensus 82 l~~~~~~-~~~IVF~-~t~~~~~~l~~~L~~-~~~~~~lhg~~~ 122 (494)
+....++ .++|||| .+-..+..++..|.. ++.+..|.|++.
T Consensus 82 ~~~~~~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~ 125 (134)
T 3g5j_A 82 AAELALNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYK 125 (134)
T ss_dssp HHHHHTTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHH
T ss_pred HHHhccCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHH
Confidence 3334456 7999999 577777788888875 678889999874
No 146
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=57.70 E-value=14 Score=37.48 Aligned_cols=59 Identities=17% Similarity=0.089 Sum_probs=44.0
Q ss_pred ccHHHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCc-eeeecCCCCHHHHHHHHccccCCCeeEEEech
Q 011052 72 TSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (494)
Q Consensus 72 ~~k~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~-~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~ 145 (494)
.-|..+...++... ..++||.||++..+.+.++.+.+ .+. +..+||+... ..+|+|+|.
T Consensus 119 sGKT~~~l~~i~~~--~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g~~~~-------------~~~Ivv~T~ 179 (472)
T 2fwr_A 119 SGKTHVAMAAINEL--STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKE-------------LKPLTVSTY 179 (472)
T ss_dssp SCHHHHHHHHHHHH--CSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSSSCBC-------------CCSEEEEEH
T ss_pred CCHHHHHHHHHHHc--CCCEEEEECCHHHHHHHHHHHHhCCCcceEEECCCcCC-------------cCCEEEEEc
Confidence 34554444444433 57999999999999999999987 566 8889988642 457999996
No 147
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=57.06 E-value=13 Score=29.62 Aligned_cols=44 Identities=7% Similarity=0.034 Sum_probs=33.5
Q ss_pred HHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cC-ceeeecCCCC
Q 011052 79 SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-II-ASEALHGDIS 122 (494)
Q Consensus 79 ~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~-~~~~lhg~~~ 122 (494)
...+..+.++.+++|||.+-..+..++..|.. ++ .+..|.|++.
T Consensus 49 ~~~~~~l~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T 1gmx_A 49 GAFMRDNDFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFE 94 (108)
T ss_dssp HHHHHHSCTTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred HHHHHhcCCCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHH
Confidence 34444455678999999998888888888886 66 4778888864
No 148
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=56.73 E-value=18 Score=33.39 Aligned_cols=59 Identities=17% Similarity=0.075 Sum_probs=42.5
Q ss_pred ccHHHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCc-eeeecCCCCHHHHHHHHccccCCCeeEEEech
Q 011052 72 TSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (494)
Q Consensus 72 ~~k~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~-~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~ 145 (494)
.-|..+...++... ..++||+|+++..++++++.+.+ .+. +..++|+.. ...+|+|+|.
T Consensus 119 ~GKT~~a~~~~~~~--~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~-------------~~~~i~v~T~ 179 (237)
T 2fz4_A 119 SGKTHVAMAAINEL--STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIK-------------ELKPLTVSTY 179 (237)
T ss_dssp TTHHHHHHHHHHHS--CSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCB-------------CCCSEEEEEH
T ss_pred CCHHHHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCC-------------CcCCEEEEeH
Confidence 45655544444433 57999999999999999999886 445 777887753 1457899985
No 149
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=52.92 E-value=10 Score=31.18 Aligned_cols=45 Identities=20% Similarity=0.189 Sum_probs=33.1
Q ss_pred HHHHHHHhccCCcEEEEcCChhh--HHHHHHHHhc-cCceeeecCCCC
Q 011052 78 LSDLITVYAKGGKTIVFTQTKRD--ADEVSLALTS-IIASEALHGDIS 122 (494)
Q Consensus 78 L~~ll~~~~~~~~~IVF~~t~~~--~~~l~~~L~~-~~~~~~lhg~~~ 122 (494)
+...+..+.++.++||||.+-.. +..++..|.. ++.+..|.|++.
T Consensus 61 l~~~~~~l~~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~ 108 (124)
T 3flh_A 61 LATRIGELDPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALE 108 (124)
T ss_dssp HHHHGGGSCTTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHH
T ss_pred HHHHHhcCCCCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHH
Confidence 33344445566789999999776 7888888875 788888888863
No 150
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=52.44 E-value=13 Score=29.50 Aligned_cols=40 Identities=15% Similarity=0.209 Sum_probs=31.4
Q ss_pred HHhccCCcEEEEcCChhhHHHHHHHHhc-cCc-eeeecCCCC
Q 011052 83 TVYAKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDIS 122 (494)
Q Consensus 83 ~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~-~~~lhg~~~ 122 (494)
..+.++.++||||.+-..+...+..|.. ++. +..|.|++.
T Consensus 47 ~~l~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 88 (106)
T 3hix_A 47 SSLEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 88 (106)
T ss_dssp HHSCTTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHH
T ss_pred hcCCCCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHH
Confidence 4455667899999998888888888875 664 788888853
No 151
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=51.18 E-value=23 Score=26.58 Aligned_cols=42 Identities=17% Similarity=0.235 Sum_probs=29.6
Q ss_pred HHHHHHh--ccCCcEEEEcCChhhHHHHHHHHhc-cCc-eeeecCCC
Q 011052 79 SDLITVY--AKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDI 121 (494)
Q Consensus 79 ~~ll~~~--~~~~~~IVF~~t~~~~~~l~~~L~~-~~~-~~~lhg~~ 121 (494)
...+..+ .++.+++|||.+-..+...+..|.. ++. +..+ |++
T Consensus 30 ~~~~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~ 75 (85)
T 2jtq_A 30 KERIATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGL 75 (85)
T ss_dssp HHHHHHHCCCTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EET
T ss_pred HHHHHHhCCCCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCH
Confidence 3344444 4567899999998888888888875 554 5555 764
No 152
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=49.53 E-value=29 Score=35.81 Aligned_cols=66 Identities=12% Similarity=0.167 Sum_probs=40.1
Q ss_pred CCcEEEEcCChhhHHHHHHHHhcc-----CceeeecCCCCHHHHHHHHccccCCCeeEEEechhh------hccCCCCcc
Q 011052 88 GGKTIVFTQTKRDADEVSLALTSI-----IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA------ARGLDIPNV 156 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~~-----~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~------~~GiDip~v 156 (494)
..++||.||+++.++++++.+.+. +.+...+++..... .....+|+|+|+-. ...+++.++
T Consensus 189 ~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~ 260 (508)
T 3fho_A 189 KPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKG--------AKIDAQIVIGTPGTVMDLMKRRQLDARDI 260 (508)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC------------------CCCCSEEEECHHHHHHHHHTTCSCCTTC
T ss_pred CceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCccccc--------ccCCCCEEEECHHHHHHHHHcCCccccCC
Confidence 348999999999999999998752 22233333221111 12257899999732 224567788
Q ss_pred cEEEe
Q 011052 157 DLIIH 161 (494)
Q Consensus 157 ~~VI~ 161 (494)
++||.
T Consensus 261 ~lIIi 265 (508)
T 3fho_A 261 KVFVL 265 (508)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 88773
No 153
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=48.68 E-value=10 Score=31.45 Aligned_cols=44 Identities=14% Similarity=0.145 Sum_probs=32.8
Q ss_pred HHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCc-eeeecCCCC
Q 011052 79 SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDIS 122 (494)
Q Consensus 79 ~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~-~~~lhg~~~ 122 (494)
..++..+.++.++||||.+-..+..++..|.. ++. +..|.|++.
T Consensus 73 ~~~~~~l~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 73 EQVSSHFGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 118 (129)
T ss_dssp HHHTTTCCTTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred HHHHhhCCCCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 33333345668999999998888888888875 664 778889864
No 154
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=47.63 E-value=1.1e+02 Score=31.37 Aligned_cols=111 Identities=12% Similarity=0.081 Sum_probs=73.6
Q ss_pred EEEEcCcccHHHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhccC--ceeee-------cCCCC-----HHHHHHHH
Q 011052 65 YAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSII--ASEAL-------HGDIS-----QHQRERTL 130 (494)
Q Consensus 65 ~~~~~~~~~k~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~--~~~~l-------hg~~~-----~~~R~~~l 130 (494)
...-+....|.-++..++... +.++||.|++...|.++++.|+..+ .|..+ |-..+ ..+|..++
T Consensus 18 ~l~g~~gs~ka~~~a~l~~~~--~~p~lvv~~~~~~A~~l~~~l~~~~~~~v~~fp~~e~lpyd~~~p~~~~~~~Rl~~l 95 (483)
T 3hjh_A 18 LLGELTGAACATLVAEIAERH--AGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTL 95 (483)
T ss_dssp EEECCCTTHHHHHHHHHHHHS--SSCEEEEESSHHHHHHHHHHHHHTCSSCEEECCCCCSCTTCSSCCCHHHHHHHHHHH
T ss_pred EEeCCCchHHHHHHHHHHHHh--CCCEEEEeCCHHHHHHHHHHHHhhCCCcEEEEeCcccccccccCCChHHHHHHHHHH
Confidence 334455567777777777653 5789999999999999999998532 12221 11111 24688888
Q ss_pred ccccCCCeeEEEechhhhccCCCCc-----ccEEEecCCCCChhhHHHHhcc
Q 011052 131 NGFRQGKFTVLVATDVAARGLDIPN-----VDLIIHYELPNDPETFVHRSGR 177 (494)
Q Consensus 131 ~~Fr~g~~~iLVaT~~~~~GiDip~-----v~~VI~~~~P~~~~~y~qr~GR 177 (494)
.++.+++..|+|+|-.+..+.=.|. -.+.+..+--.+.+.+.++.=.
T Consensus 96 ~~L~~~~~~ivv~sv~al~~~~~p~~~~~~~~~~l~~G~~~~~~~l~~~L~~ 147 (483)
T 3hjh_A 96 YQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDS 147 (483)
T ss_dssp HHGGGCCSSEEEEEHHHHHBCCCCHHHHHHTCEEEETTCCCCHHHHHHHHHH
T ss_pred HHHHhCCCCEEEEEHHHHhhcCCCHHHHhhCeEEEECCCCcCHHHHHHHHHH
Confidence 8888777788888865555443332 2456677777788888776543
No 155
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=47.49 E-value=10 Score=30.33 Aligned_cols=38 Identities=13% Similarity=0.123 Sum_probs=30.9
Q ss_pred HhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCC
Q 011052 84 VYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDI 121 (494)
Q Consensus 84 ~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~ 121 (494)
.+.++.+++|+|.+-..+...+..|.+ ++.+..|.|++
T Consensus 52 ~l~~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 52 SFNKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp GCCTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred hhcCCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 345678999999998888888888886 78877788875
No 156
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=46.49 E-value=11 Score=29.77 Aligned_cols=37 Identities=14% Similarity=0.135 Sum_probs=30.7
Q ss_pred hccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCC
Q 011052 85 YAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDI 121 (494)
Q Consensus 85 ~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~ 121 (494)
+.++.++||||.+-..+...+..|.. ++.+..+.|++
T Consensus 53 l~~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (103)
T 3eme_A 53 FNKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp CCTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCH
Confidence 34567899999998888889999986 67888888885
No 157
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=45.96 E-value=79 Score=33.96 Aligned_cols=82 Identities=23% Similarity=0.309 Sum_probs=56.3
Q ss_pred EcCcccHHHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhccC---ceeee--------------------cCCCC--
Q 011052 68 STTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSII---ASEAL--------------------HGDIS-- 122 (494)
Q Consensus 68 ~~~~~~k~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~---~~~~l--------------------hg~~~-- 122 (494)
-+....|.-++..++... ..++||.++++..|.+++..|+..+ .|..+ |...+
T Consensus 35 g~tgs~kt~~~a~~~~~~--~~~~lvv~~~~~~A~ql~~el~~~~~~~~V~~fps~yd~~~pe~~~~~~d~~~~~~~~~~ 112 (664)
T 1c4o_A 35 GATGTGKTVTMAKVIEAL--GRPALVLAPNKILAAQLAAEFRELFPENAVEYFISYYDYYQPEAYVPGKDLYIEKDASIN 112 (664)
T ss_dssp ECTTSCHHHHHHHHHHHH--TCCEEEEESSHHHHHHHHHHHHHHCTTSEEEECCCGGGTSCCCEEEGGGTEEECCCCSCC
T ss_pred cCCCcHHHHHHHHHHHHh--CCCEEEEecCHHHHHHHHHHHHHHCCCCeEEEcCchhhccCcccccchhhhhhhhhcccC
Confidence 345567877777777654 4689999999999999999998543 12222 23332
Q ss_pred ---HHHHHHHHccccCCCeeEEEechhhhccC
Q 011052 123 ---QHQRERTLNGFRQGKFTVLVATDVAARGL 151 (494)
Q Consensus 123 ---~~~R~~~l~~Fr~g~~~iLVaT~~~~~Gi 151 (494)
..+|..++.++..+.-.|+|||-.+-.++
T Consensus 113 ~~i~~~R~~~l~~L~~~~~~ivV~s~~~l~~~ 144 (664)
T 1c4o_A 113 PEIERLRHSTTRSLLTRRDVIVVASVSAIYGL 144 (664)
T ss_dssp HHHHHHHHHHHHHHHHCSCEEEEEEGGGCSCC
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEecHHHHhcC
Confidence 45788888888665656888886544554
No 158
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=45.47 E-value=12 Score=29.40 Aligned_cols=38 Identities=8% Similarity=0.177 Sum_probs=31.0
Q ss_pred hccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCC
Q 011052 85 YAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDIS 122 (494)
Q Consensus 85 ~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~ 122 (494)
+.++.+++|||.+-..+...+..|.. ++.+..+.|++.
T Consensus 53 l~~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 53 FNDNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp SCTTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 34667999999998888889999985 678888888853
No 159
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=41.01 E-value=5.7 Score=39.61 Aligned_cols=7 Identities=29% Similarity=0.344 Sum_probs=2.7
Q ss_pred HHHHhhc
Q 011052 346 KELLNKQ 352 (494)
Q Consensus 346 ~~~~~~~ 352 (494)
.++++.+
T Consensus 239 ~~il~~y 245 (358)
T 2pk2_A 239 HEFLQIL 245 (358)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 3344433
No 160
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=40.54 E-value=23 Score=27.16 Aligned_cols=36 Identities=11% Similarity=0.150 Sum_probs=29.4
Q ss_pred ccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCC
Q 011052 86 AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDIS 122 (494)
Q Consensus 86 ~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~ 122 (494)
.+ .+++|||.+-..+...+..|.. ++.+..+.|++.
T Consensus 52 ~~-~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 52 PR-RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp CS-SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CC-CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 45 8899999998888888888886 677778888863
No 161
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=37.25 E-value=43 Score=28.10 Aligned_cols=37 Identities=8% Similarity=0.013 Sum_probs=28.2
Q ss_pred ccCCcEEEEcCChhhHHHHHHHHhc-cC-ceeeecCCCC
Q 011052 86 AKGGKTIVFTQTKRDADEVSLALTS-II-ASEALHGDIS 122 (494)
Q Consensus 86 ~~~~~~IVF~~t~~~~~~l~~~L~~-~~-~~~~lhg~~~ 122 (494)
.++.++||||.+-..+...+..|.. ++ .+..|.|++.
T Consensus 78 ~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 78 QHERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp ---CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 4567899999998788888888875 66 4888989874
No 162
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=35.67 E-value=50 Score=27.19 Aligned_cols=37 Identities=5% Similarity=0.076 Sum_probs=29.6
Q ss_pred ccCCcEEEEcCChhhHHHHHHHHhc-cC-ceeeecCCCC
Q 011052 86 AKGGKTIVFTQTKRDADEVSLALTS-II-ASEALHGDIS 122 (494)
Q Consensus 86 ~~~~~~IVF~~t~~~~~~l~~~L~~-~~-~~~~lhg~~~ 122 (494)
.++.++||||.+=..+...+..|.. ++ .+..+.|++.
T Consensus 72 ~~~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~ 110 (134)
T 1vee_A 72 PENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAE 110 (134)
T ss_dssp GGGCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTT
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCcc
Confidence 3567999999998888888888875 67 4788889974
No 163
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=35.37 E-value=2.3e+02 Score=30.30 Aligned_cols=107 Identities=18% Similarity=0.238 Sum_probs=71.0
Q ss_pred EcCcccHHHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhccC---ceeeec--------------------CCC--C
Q 011052 68 STTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSII---ASEALH--------------------GDI--S 122 (494)
Q Consensus 68 ~~~~~~k~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~---~~~~lh--------------------g~~--~ 122 (494)
-+....|.-++..++... ..++||.|+++..|.+++..|+..+ .|..+- -.. +
T Consensus 39 g~~gs~k~~~~a~~~~~~--~~~~lvv~~~~~~A~~l~~el~~~~~~~~v~~fps~yd~~~pe~~~~~~d~y~~~~~~~~ 116 (661)
T 2d7d_A 39 GATGTGKTFTVSNLIKEV--NKPTLVIAHNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASIN 116 (661)
T ss_dssp ECTTSCHHHHHHHHHHHH--CCCEEEECSSHHHHHHHHHHHHHHCTTSEEEEECCCEEEEECCEEETTTTEEECCEEEEC
T ss_pred CcCCcHHHHHHHHHHHHh--CCCEEEEECCHHHHHHHHHHHHHHcCCCcEEEccccccccCccccCCcchhhhhhhcccC
Confidence 455567777777777654 4689999999999999999998532 122221 111 1
Q ss_pred ---HHHHHHHHccccCCCeeEEEechhhhccCCCCc----ccEEEecCCCCChhhHHHHhc
Q 011052 123 ---QHQRERTLNGFRQGKFTVLVATDVAARGLDIPN----VDLIIHYELPNDPETFVHRSG 176 (494)
Q Consensus 123 ---~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~----v~~VI~~~~P~~~~~y~qr~G 176 (494)
..+|..++.++..++-.|+|||-.+-.++=.|. ..+.+..+--.+.+.+.++.=
T Consensus 117 ~~i~~~Rl~~l~~L~~~~~~ivV~sv~al~~l~~~~~~~~~~~~l~~G~~~~~~~l~~~L~ 177 (661)
T 2d7d_A 117 DEIDKLRHSATSALFERRDVIIIASVSCIYGLGSPEEYREMVVSLRTEMEIERNELLRKLV 177 (661)
T ss_dssp HHHHHHHHHHHHHHHHCSCEEEEECGGGGSCBCCHHHHHHHCEEEETTCBCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEecHHHHcCCCCHHHHHhccEEEeCCCEeCHHHHHHHHH
Confidence 568888888886555568888865556653332 235566666777777766653
No 164
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=33.20 E-value=53 Score=25.98 Aligned_cols=38 Identities=16% Similarity=0.191 Sum_probs=29.6
Q ss_pred hccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCC
Q 011052 85 YAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDIS 122 (494)
Q Consensus 85 ~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~ 122 (494)
..++.++||||.+-..+...+..|.. ++....|.|++.
T Consensus 53 ~~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 91 (110)
T 2k0z_A 53 QHKDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVY 91 (110)
T ss_dssp SCSSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGG
T ss_pred cCCCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHH
Confidence 34668999999998888888888875 664477888853
No 165
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=32.47 E-value=94 Score=34.10 Aligned_cols=59 Identities=15% Similarity=0.156 Sum_probs=40.0
Q ss_pred ccCCcEEEEcCChhhHHHHHHHHhc---cCceeeecCCCCHHHHHHHHcccc--------CCCeeEEEech
Q 011052 86 AKGGKTIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGFR--------QGKFTVLVATD 145 (494)
Q Consensus 86 ~~~~~~IVF~~t~~~~~~l~~~L~~---~~~~~~lhg~~~~~~R~~~l~~Fr--------~g~~~iLVaT~ 145 (494)
...+++||.|| ...+.+-...+.+ .+.+.++||...........+-+. ....+|+|+|-
T Consensus 284 ~~~~~~LIV~P-~sll~qW~~E~~~~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy 353 (800)
T 3mwy_W 284 RQNGPHIIVVP-LSTMPAWLDTFEKWAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTY 353 (800)
T ss_dssp SCCSCEEEECC-TTTHHHHHHHHHHHSTTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECT
T ss_pred CCCCCEEEEEC-chHHHHHHHHHHHHCCCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecH
Confidence 44678999999 5667777777765 467888898865555444443332 24567999985
No 166
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=31.91 E-value=1.4e+02 Score=27.27 Aligned_cols=133 Identities=12% Similarity=0.058 Sum_probs=69.7
Q ss_pred HHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCC--CcEEEeccccccccc--cceEEEEEEcCcccHHHHHHHHH
Q 011052 7 EEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDN--PLNIDLVGNQDEKLA--EGIKLYAISTTATSKRTILSDLI 82 (494)
Q Consensus 7 ~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~--p~~i~~~~~~~~~~~--~~i~~~~~~~~~~~k~~~L~~ll 82 (494)
.+-.++++........+-.+.+++.+.+. .+++.+.. ...|-.-+..-..+. ..+....+..... ++|..+.
T Consensus 25 ~~~~~~i~~e~~~~~~I~vi~~~le~av~-~a~~~~~~~~~dVIISRGgta~~Lr~~~~iPVV~I~vs~~---Dil~aL~ 100 (225)
T 2pju_A 25 FELFRDISLEFDHLANITPIQLGFEKAVT-YIRKKLANERCDAIIAAGSNGAYLKSRLSVPVILIKPSGY---DVLQFLA 100 (225)
T ss_dssp HHHHHHHHTTTTTTCEEEEECCCHHHHHH-HHHHHTTTSCCSEEEEEHHHHHHHHTTCSSCEEEECCCHH---HHHHHHH
T ss_pred HHHHHHHHHhhCCCceEEEecCcHHHHHH-HHHHHHhcCCCeEEEeCChHHHHHHhhCCCCEEEecCCHH---HHHHHHH
Confidence 33445555544444566666777755444 34444432 322211111111111 1233444444443 4444333
Q ss_pred HHhccCCc--EEEEcCChhhHHHHHHHHhccCceeeecCCCCHHHHHHHHccccCCCeeEEEechh
Q 011052 83 TVYAKGGK--TIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (494)
Q Consensus 83 ~~~~~~~~--~IVF~~t~~~~~~l~~~L~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~ 146 (494)
.......+ ++=|-+....++.+++.|.-.+....++. .++-+..+++.+...++++|+..+
T Consensus 101 ~a~~~~~kIavVg~~~~~~~~~~i~~ll~~~i~~~~~~~---~ee~~~~i~~l~~~G~~vVVG~~~ 163 (225)
T 2pju_A 101 KAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYIT---EEDARGQINELKANGTEAVVGAGL 163 (225)
T ss_dssp HTTCTTSCEEEEEESSCCHHHHHHHHHHTCCEEEEEESS---HHHHHHHHHHHHHTTCCEEEESHH
T ss_pred HHHhhCCcEEEEeCchhhhHHHHHHHHhCCceEEEEeCC---HHHHHHHHHHHHHCCCCEEECCHH
Confidence 33222233 45566778888889998876666666654 456566777777677888887653
No 167
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=31.49 E-value=32 Score=28.62 Aligned_cols=38 Identities=16% Similarity=0.133 Sum_probs=30.8
Q ss_pred hccCCcEEEEcCChhhHHHHHHHHhc-cC-ceeeecCCCC
Q 011052 85 YAKGGKTIVFTQTKRDADEVSLALTS-II-ASEALHGDIS 122 (494)
Q Consensus 85 ~~~~~~~IVF~~t~~~~~~l~~~L~~-~~-~~~~lhg~~~ 122 (494)
..++.++||||.+-..+...+..|.. ++ .+..|.|++.
T Consensus 79 l~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 118 (137)
T 1qxn_A 79 LDPEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMD 118 (137)
T ss_dssp CCTTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHH
T ss_pred CCCCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHH
Confidence 45678999999998888888888875 66 5888889863
No 168
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=29.43 E-value=35 Score=28.15 Aligned_cols=37 Identities=5% Similarity=0.077 Sum_probs=29.8
Q ss_pred ccCCcEEEEcCChhhHHHHHHHHhc-cCc-eeeecCCCC
Q 011052 86 AKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDIS 122 (494)
Q Consensus 86 ~~~~~~IVF~~t~~~~~~l~~~L~~-~~~-~~~lhg~~~ 122 (494)
.++.++||||.+-..+..++..|.. ++. +..|.|++.
T Consensus 84 ~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 122 (139)
T 2hhg_A 84 QEDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFG 122 (139)
T ss_dssp GSSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHH
T ss_pred CCCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCHH
Confidence 4567899999998888888888875 664 888989863
No 169
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=28.38 E-value=35 Score=28.71 Aligned_cols=37 Identities=16% Similarity=0.178 Sum_probs=29.9
Q ss_pred ccCCcEEEEcCCh--hhHHHHHHHHhc-cCceeeecCCCC
Q 011052 86 AKGGKTIVFTQTK--RDADEVSLALTS-IIASEALHGDIS 122 (494)
Q Consensus 86 ~~~~~~IVF~~t~--~~~~~l~~~L~~-~~~~~~lhg~~~ 122 (494)
.++.++||||.+- ..+..++..|.. ++.+..|.|++.
T Consensus 70 ~~~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~ 109 (144)
T 3nhv_A 70 SKEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIE 109 (144)
T ss_dssp CTTSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHH
T ss_pred CCCCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHH
Confidence 4567899999987 578888888875 778888999864
No 170
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Probab=27.54 E-value=1.5e+02 Score=26.56 Aligned_cols=55 Identities=7% Similarity=0.017 Sum_probs=39.1
Q ss_pred CcEEEEcCChhhHHHHHHHHhccCc--eeeecC--------CCCHHHHHHHHccccCCCeeEEEechhhh
Q 011052 89 GKTIVFTQTKRDADEVSLALTSIIA--SEALHG--------DISQHQRERTLNGFRQGKFTVLVATDVAA 148 (494)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~~~~--~~~lhg--------~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~ 148 (494)
.+++|...|=++|..+++.+ .++. ++.+|- .|+++.|++..+. ..+|+.+|-+++
T Consensus 45 k~iVVAS~sG~TA~k~~e~~-~~i~lVvVTh~~GF~~pg~~e~~~e~~~~L~~~----G~~V~t~tH~ls 109 (201)
T 1vp8_A 45 KHLVVASSYGDTAMKALEMA-EGLEVVVVTYHTGFVREGENTMPPEVEEELRKR----GAKIVRQSHILS 109 (201)
T ss_dssp CEEEEECSSSHHHHHHHHHC-TTCEEEEEECCTTSSSTTCCSSCHHHHHHHHHT----TCEEEECCCTTT
T ss_pred CEEEEEeCCChHHHHHHHHh-cCCeEEEEeCcCCCCCCCCCcCCHHHHHHHHhC----CCEEEEEecccc
Confidence 68888888888998888877 4333 334443 4677777766665 888888887653
No 171
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=26.77 E-value=41 Score=28.17 Aligned_cols=38 Identities=16% Similarity=0.215 Sum_probs=29.8
Q ss_pred hccCCcEEEEcCChhhHHHHHHHHhc-cCc-eeeecCCCC
Q 011052 85 YAKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDIS 122 (494)
Q Consensus 85 ~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~-~~~lhg~~~ 122 (494)
..++.++||||.+-..+..++..|.. ++. +..|.|++.
T Consensus 53 l~~~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 92 (141)
T 3ilm_A 53 LEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 92 (141)
T ss_dssp SCTTSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHHH
T ss_pred CCCCCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHHH
Confidence 44567899999998888888888875 664 778888853
No 172
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=25.78 E-value=44 Score=27.60 Aligned_cols=36 Identities=11% Similarity=0.201 Sum_probs=29.0
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhc-cCc-eeeecCCCC
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDIS 122 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-~~~-~~~lhg~~~ 122 (494)
++.++||||.+-..+...+..|.. ++. +..+.|++.
T Consensus 90 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 127 (139)
T 3d1p_A 90 SAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMN 127 (139)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHHH
T ss_pred CCCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 457899999998888888888886 664 778888863
No 173
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=24.57 E-value=4e+02 Score=24.21 Aligned_cols=60 Identities=12% Similarity=0.091 Sum_probs=29.2
Q ss_pred HHHHhc-cCceeeecCCCCHHHHHHHHcc-cc-CCCeeEEEech----------hhhccCCCCc-ccEEEecCC
Q 011052 105 SLALTS-IIASEALHGDISQHQRERTLNG-FR-QGKFTVLVATD----------VAARGLDIPN-VDLIIHYEL 164 (494)
Q Consensus 105 ~~~L~~-~~~~~~lhg~~~~~~R~~~l~~-Fr-~g~~~iLVaT~----------~~~~GiDip~-v~~VI~~~~ 164 (494)
.+.|.+ ++.+......-....-...++. +. ....+.++|++ +.+.|+.+|+ --.||-+|.
T Consensus 153 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~~g~~vP~~dv~vig~D~ 226 (297)
T 3rot_A 153 KTILQDKGIFFEELDVGTDPNQVQSRVKSYFKIHPETNIIFCLTSQALDPLGQMLLHPDRYDFNYQPQVYSFDK 226 (297)
T ss_dssp HHHHHHTTCEEEEEECCSCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHHHHSHHHHTCCCCCEEEEECC
T ss_pred HHHHHhcCCeEEEeecCCChHHHHHHHHHHHHhCCCCCEEEEcCCcchHHHHHHHHhcCCccCCCceEEEEeCC
Confidence 334443 4555545444444444444444 22 23456666654 3356777765 334555553
No 174
>1t57_A Conserved protein MTH1675; structural genomics, FMN; HET: FMN; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.49.1.2
Probab=23.38 E-value=1.9e+02 Score=25.96 Aligned_cols=55 Identities=16% Similarity=0.192 Sum_probs=38.4
Q ss_pred CcEEEEcCChhhHHHHHHHHhccCceeeecC--------CCCHHHHHHHHccccCCCeeEEEechhh
Q 011052 89 GKTIVFTQTKRDADEVSLALTSIIASEALHG--------DISQHQRERTLNGFRQGKFTVLVATDVA 147 (494)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~~~~~~~lhg--------~~~~~~R~~~l~~Fr~g~~~iLVaT~~~ 147 (494)
.+++|...+=+.|..+++.+...+-++.+|- .|+++.|++..+. ..+|+.+|-++
T Consensus 53 k~iVVASssG~TA~k~~e~~~~~lVvVTh~~GF~~pg~~e~~~e~~~~L~~~----G~~V~t~tH~l 115 (206)
T 1t57_A 53 RNFVVASVSGETALRLSEMVEGNIVSVTHHAGFREKGQLELEDEARDALLER----GVNVYAGSHAL 115 (206)
T ss_dssp CEEEEECSSSHHHHHHHTTCCSEEEEECCCTTSSSTTCCSSCHHHHHHHHHH----TCEEECCSCTT
T ss_pred CEEEEEeCCCHHHHHHHHHccCCEEEEeCcCCCCCCCCCcCCHHHHHHHHhC----CCEEEEeeccc
Confidence 6788888888888888887633233334443 4677777777666 88888888765
No 175
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=23.37 E-value=34 Score=34.53 Aligned_cols=35 Identities=20% Similarity=0.138 Sum_probs=25.4
Q ss_pred ccCCcEEEEcCChhhHHHHHHHHhccCceeeecCCC
Q 011052 86 AKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDI 121 (494)
Q Consensus 86 ~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~lhg~~ 121 (494)
..+.++||.+||+..|+++++.+. ++.+..+++.+
T Consensus 29 ~~g~~~lvl~Pt~~La~Q~~~~~~-~~~v~~~~~~~ 63 (431)
T 2v6i_A 29 KKRLRTVILAPTRVVASEMYEALR-GEPIRYMTPAV 63 (431)
T ss_dssp HTTCCEEEEESSHHHHHHHHHHTT-TSCEEEC----
T ss_pred hCCCCEEEECcHHHHHHHHHHHhC-CCeEEEEecCc
Confidence 355799999999999999999886 45666565554
No 176
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=21.75 E-value=38 Score=29.12 Aligned_cols=10 Identities=30% Similarity=0.209 Sum_probs=5.9
Q ss_pred ceEEEEecCC
Q 011052 286 WVTLQLTRDS 295 (494)
Q Consensus 286 ~~t~~~~~~~ 295 (494)
.+.+++..+.
T Consensus 102 ~~~~Vi~~d~ 111 (175)
T 2rb4_A 102 QVTIVVNFDL 111 (175)
T ss_dssp TEEEEEESSC
T ss_pred cCCEEEEeCC
Confidence 4566666654
No 177
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=21.68 E-value=34 Score=30.30 Aligned_cols=25 Identities=8% Similarity=0.147 Sum_probs=14.3
Q ss_pred ceEEEEecCCccccCccchhHHHHHhhhhcCcC
Q 011052 286 WVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTA 318 (494)
Q Consensus 286 ~~t~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~ 318 (494)
.+.+++..+. |.+...++.+.++..
T Consensus 122 ~v~~VI~~d~--------p~~~~~~~qr~GR~g 146 (191)
T 2p6n_A 122 AIQHVINYDM--------PEEIENYVHRIGRTG 146 (191)
T ss_dssp CCSEEEESSC--------CSSHHHHHHHHTTSC
T ss_pred cCCEEEEeCC--------CCCHHHHHHHhCccc
Confidence 4556677665 445555666654433
No 178
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=21.42 E-value=1.1e+02 Score=28.39 Aligned_cols=37 Identities=24% Similarity=0.159 Sum_probs=29.9
Q ss_pred ccCCcEEEEcCChhhHHHHHHHHhc-cC-ceeeecCCCC
Q 011052 86 AKGGKTIVFTQTKRDADEVSLALTS-II-ASEALHGDIS 122 (494)
Q Consensus 86 ~~~~~~IVF~~t~~~~~~l~~~L~~-~~-~~~~lhg~~~ 122 (494)
.++.++||||.+-..+...+..|.. ++ .+..+.|++.
T Consensus 228 ~~~~~ivv~C~~G~rs~~a~~~L~~~G~~~v~~~~GG~~ 266 (280)
T 1urh_A 228 SYDKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWS 266 (280)
T ss_dssp CSSSCEEEECCSSSTHHHHHHHHHHTTCSSCEEECCSCC
T ss_pred CCCCCEEEECChHHHHHHHHHHHHHcCCCCceeeCChHH
Confidence 4567899999998888888888875 66 4888889875
No 179
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=21.24 E-value=2.7e+02 Score=21.05 Aligned_cols=69 Identities=12% Similarity=0.108 Sum_probs=41.2
Q ss_pred ceEEEEecCCccccCccchhHHHHHhhhhcCcCccccccEEEeecCCcceeEEec-CHHHHHHHHhhcCC---CCCceEe
Q 011052 286 WVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDL-PEEIAKELLNKQIP---PGNTISK 361 (494)
Q Consensus 286 ~~t~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~ig~i~~~~~~~~~gs~~d~-~~~~~~~~~~~~~~---~~~~l~v 361 (494)
..+|+|..= ...++..+|..++...+. |-.+.+..++ +||+. ..+.|+.+++.+.. .+..+.|
T Consensus 11 ~~~l~V~nl----~~~~t~~~l~~~F~~~G~-----i~~v~~~~~~----afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 77 (103)
T 2dgu_A 11 VKVLFVRNL----ANTVTEEILEKAFSQFGK-----LERVKKLKDY----AFIHFDERDGAVKAMEEMNGKDLEGENIEI 77 (103)
T ss_dssp CCCEEEECC----CTTCCHHHHHHHHHHHSC-----EEEEEECSSC----EEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCEEEEeCC----CCCCCHHHHHHHHHhcCC-----EEEEEEECCE----EEEEeCCHHHHHHHHHHHCCCccCCCEEEE
Confidence 456666422 224778899999988765 4455666555 57766 45667777775443 3444555
Q ss_pred eccCCC
Q 011052 362 ITKLPA 367 (494)
Q Consensus 362 ~~~LP~ 367 (494)
--..|.
T Consensus 78 ~~a~~~ 83 (103)
T 2dgu_A 78 VFAKPP 83 (103)
T ss_dssp EECCCC
T ss_pred EEcCCC
Confidence 444443
No 180
>3u5c_h Suppressor protein STM1; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_h
Probab=21.23 E-value=20 Score=34.07 Aligned_cols=46 Identities=11% Similarity=0.154 Sum_probs=0.0
Q ss_pred CCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 011052 366 PALQDDGPSSDNYGRFSSRDRFSRGGGSRFSRGGARGGARGGGSMDRR 413 (494)
Q Consensus 366 P~~~~~~~~~~~~G~~g~~~~~~~~g~~~~~~g~~~g~~~~~g~~~~~ 413 (494)
+.+.+..+.+..++++|.++ ++.|++++|||+.+|+++++.+.++.
T Consensus 211 ~~F~~~~~~r~~~~rgg~~~--~~~~~~rgg~g~~~~~~~~~~~~~~~ 256 (273)
T 3u5c_h 211 ATFVESNTRKNFGDRNNNSR--NNFNNRRGGRGARKGNNTANATNSAN 256 (273)
T ss_dssp ------------------------------------------------
T ss_pred CEEcCCCCcCCCCCCCCccc--cccCCCcCCcccccCCCCCCCCCCCC
No 181
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=21.06 E-value=92 Score=29.95 Aligned_cols=65 Identities=14% Similarity=0.268 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhccCce-----eeecCCCCHHHHHHHHccccCCCeeEEEech
Q 011052 74 KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIAS-----EALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (494)
Q Consensus 74 k~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~-----~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~ 145 (494)
++.....++..... ..-|+|+.|+..++.+.........+ ..+-|-++... . ..|+ .-++||.||
T Consensus 61 ~L~~Aa~~I~~i~~-~~~ILfVgTk~~aq~aV~k~A~~tG~~yV~~RWlgGtLTN~~-t---~~f~--ePdllvV~D 130 (305)
T 3iz6_A 61 KLQLAARVIVAIEN-PQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQL-Q---TSFS--EPRLLILTD 130 (305)
T ss_dssp HHHHHHHHHHHTTS-SCCEEEECCSHHHHHHHHHHHHHHTCEEECSCCCTTTTTTTT-T---SCSS--CCSEEEESC
T ss_pred HHHHHHHHHHHHhC-CCeEEEEeCcHHHHHHHHHHHHHhCCccccCcccCCcccCcc-c---cccc--CCceeEEeC
Confidence 33333445555433 44467888998887766655432111 12333333222 1 2354 556788877
No 182
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=21.02 E-value=78 Score=29.55 Aligned_cols=45 Identities=13% Similarity=0.130 Sum_probs=32.8
Q ss_pred HHHHHHHH--hccCCcEEEEcCChhhHHHHHHHHh-c-cC-ceeeecCCC
Q 011052 77 ILSDLITV--YAKGGKTIVFTQTKRDADEVSLALT-S-II-ASEALHGDI 121 (494)
Q Consensus 77 ~L~~ll~~--~~~~~~~IVF~~t~~~~~~l~~~L~-~-~~-~~~~lhg~~ 121 (494)
.|...+.. ..++.++||||.+-..+...+..|. . ++ .+..+.|++
T Consensus 220 ~l~~~~~~~g~~~~~~ivvyC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~ 269 (285)
T 1uar_A 220 ELRALYEPLGITKDKDIVVYCRIAERSSHSWFVLKYLLGYPHVKNYDGSW 269 (285)
T ss_dssp HHHHHHGGGTCCTTSEEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHH
T ss_pred HHHHHHHHcCCCCCCCEEEECCchHHHHHHHHHHHHHcCCCCcceeCchH
Confidence 34444444 3456789999999888888888887 4 66 588888885
No 183
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=20.28 E-value=3.3e+02 Score=23.94 Aligned_cols=129 Identities=9% Similarity=0.080 Sum_probs=0.0
Q ss_pred CCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEech----hhhccCCCCcccEEEec
Q 011052 88 GGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD----VAARGLDIPNVDLIIHY 162 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~----~~~~GiDip~v~~VI~~ 162 (494)
..+++++++..+..+.+.+.+.+ ...+..+.++ -++-....+.. +..++|+||-- .+..-+++|=|
T Consensus 4 ~~~I~~iapy~~l~~~~~~i~~e~~~~i~i~~~~--l~~~v~~a~~~-~~~~dVIISRGgta~~lr~~~~iPVV------ 74 (196)
T 2q5c_A 4 SLKIALISQNENLLNLFPKLALEKNFIPITKTAS--LTRASKIAFGL-QDEVDAIISRGATSDYIKKSVSIPSI------ 74 (196)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHHHTCEEEEEECC--HHHHHHHHHHH-TTTCSEEEEEHHHHHHHHTTCSSCEE------
T ss_pred CCcEEEEEccHHHHHHHHHHHhhhCCceEEEECC--HHHHHHHHHHh-cCCCeEEEECChHHHHHHHhCCCCEE------
Q ss_pred CCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceecCCCCHHHHHHHHHH
Q 011052 163 ELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAE 227 (494)
Q Consensus 163 ~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~p~~~~i~~~~~~ 227 (494)
++|.+..++++-+-++-+.+. ..-++-.+.-...++.++..++.++......+.+|+.+....
T Consensus 75 ~I~~s~~Dil~al~~a~~~~~--kIavvg~~~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~i~~ 137 (196)
T 2q5c_A 75 SIKVTRFDTMRAVYNAKRFGN--ELALIAYKHSIVDKHEIEAMLGVKIKEFLFSSEDEITTLISK 137 (196)
T ss_dssp EECCCHHHHHHHHHHHGGGCS--EEEEEEESSCSSCHHHHHHHHTCEEEEEEECSGGGHHHHHHH
T ss_pred EEcCCHhHHHHHHHHHHhhCC--cEEEEeCcchhhHHHHHHHHhCCceEEEEeCCHHHHHHHHHH
No 184
>1t3k_A Arath CDC25, dual-specificity tyrosine phosphatase; cell cycle, phosphorylation, plant, hydrolase; NMR {Arabidopsis thaliana} SCOP: c.46.1.1
Probab=20.13 E-value=71 Score=27.02 Aligned_cols=46 Identities=11% Similarity=0.108 Sum_probs=27.8
Q ss_pred HHHHHHHhccCCcEEEEcC-ChhhHHHHHHHH--------h-ccC-ceeeecCCCCH
Q 011052 78 LSDLITVYAKGGKTIVFTQ-TKRDADEVSLAL--------T-SII-ASEALHGDISQ 123 (494)
Q Consensus 78 L~~ll~~~~~~~~~IVF~~-t~~~~~~l~~~L--------~-~~~-~~~~lhg~~~~ 123 (494)
+..++..+.++.++||||. +-..+...+..| . .++ .+..|.|++..
T Consensus 75 ~~~l~~~~~~~~~iVvyC~~~G~rs~~aa~~L~~~l~~~L~~~G~~~V~~L~GG~~~ 131 (152)
T 1t3k_A 75 ISHLVQNVKDKDTLVFHSALSQVRGPTCARRLVNYLDEKKEDTGIKNIMILERGFNG 131 (152)
T ss_dssp HHHHHHTCCSCCEEEESSSCCSSSHHHHHHHHHHHHHHSSSCCCSSEEEEESSTTHH
T ss_pred HHHHHHhcCCCCEEEEEcCCCCcchHHHHHHHHHHHHHHHHhcCCCcEEEEcCCHHH
Confidence 3444444456678999998 644444444433 2 255 57888899753
No 185
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=20.01 E-value=22 Score=29.34 Aligned_cols=20 Identities=20% Similarity=0.408 Sum_probs=12.0
Q ss_pred ccccEEEeecCCcceeEEecCHH
Q 011052 321 EIGKIHIIADDRVQGAVFDLPEE 343 (494)
Q Consensus 321 ~ig~i~~~~~~~~~gs~~d~~~~ 343 (494)
.+|.+-+-.+. ..++.+|++
T Consensus 54 ~lg~v~IRG~n---I~~I~~pd~ 73 (119)
T 1b34_A 54 QLETLSIRGNN---IRYFILPDS 73 (119)
T ss_dssp EEEEEEECGGG---EEEEECCTT
T ss_pred EcceEEEcCCe---EEEEEeccc
Confidence 35666665553 466777766
Done!