BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011053
(494 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BTW|B Chain B, Crystal Structure Of Alr0975
Length = 254
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 101/213 (47%), Gaps = 10/213 (4%)
Query: 13 SPPAIEFASPQGKKLFIEALEGGTMEGFFKLISYYQTQSEPAYCGXXXXXXXXXXXXID- 71
SP I F S +G+KL L + E FF L + TQ AYCG I+
Sbjct: 41 SPNLIGFNSNEGEKLL---LTSRSREDFFPLSXQFVTQVNQAYCGVASIIXVLNSLGINA 97
Query: 72 PGRTWKGPWRWFDDTMLDCCEPLSKI------KDEGITFGKVSCLAFCNGANVEAFRTNE 125
P P+R F E + +G T ++ L G V+ ++
Sbjct: 98 PETAQYSPYRVFTQDNFFSNEKTKAVIAPEVVAKQGXTLDELGRLIASYGVKVKVNHASD 157
Query: 126 SSIDEFRRHVISSASSEDSHVITSYHRGVFKQTGTGHFSPIGGYHAGKDMVLILDVARFK 185
++I++FR+ V + + + VI +Y R Q GH SP+ Y+ D LI DV+R+K
Sbjct: 158 TNIEDFRKQVAENLKQDGNFVIVNYLRKEIGQERGGHISPLAAYNEQTDRFLIXDVSRYK 217
Query: 186 YPPHWVPLTLLWEAMDTIDNATGHRRGFMTVSR 218
YPP WV T LW+A +T+D+ + RGF+ VS+
Sbjct: 218 YPPVWVKTTDLWKAXNTVDSVSQKTRGFVFVSK 250
>pdb|2BTW|A Chain A, Crystal Structure Of Alr0975
pdb|2BU3|A Chain A, Acyl-Enzyme Intermediate Between Alr0975 And Glutathione
At Ph 3.4
pdb|2BU3|B Chain B, Acyl-Enzyme Intermediate Between Alr0975 And Glutathione
At Ph 3.4
Length = 254
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 101/213 (47%), Gaps = 10/213 (4%)
Query: 13 SPPAIEFASPQGKKLFIEALEGGTMEGFFKLISYYQTQSEPAYCGXXXXXXXXXXXXID- 71
SP I F S +G+KL L + E FF L + TQ AYCG I+
Sbjct: 41 SPNLIGFNSNEGEKLL---LTSRSREDFFPLSXQFVTQVNQAYCGVASIIXVLNSLGINA 97
Query: 72 PGRTWKGPWRWFDDTMLDCCEPLSKI------KDEGITFGKVSCLAFCNGANVEAFRTNE 125
P P+R F E + +G T ++ L G V+ ++
Sbjct: 98 PETAQYSPYRVFTQDNFFSNEKTKAVIAPEVVARQGXTLDELGRLIASYGVKVKVNHASD 157
Query: 126 SSIDEFRRHVISSASSEDSHVITSYHRGVFKQTGTGHFSPIGGYHAGKDMVLILDVARFK 185
++I++FR+ V + + + VI +Y R Q GH SP+ Y+ D LI DV+R+K
Sbjct: 158 TNIEDFRKQVAENLKQDGNFVIVNYLRKEIGQERGGHISPLAAYNEQTDRFLIXDVSRYK 217
Query: 186 YPPHWVPLTLLWEAMDTIDNATGHRRGFMTVSR 218
YPP WV T LW+A +T+D+ + RGF+ VS+
Sbjct: 218 YPPVWVKTTDLWKAXNTVDSVSQKTRGFVFVSK 250
>pdb|4DNX|A Chain A, The Structure Of The Atp Sulfurylase From Allochromatium
Vinosum In The Open State
pdb|4DNX|B Chain B, The Structure Of The Atp Sulfurylase From Allochromatium
Vinosum In The Open State
Length = 397
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 10/85 (11%)
Query: 129 DEFRRHVISS-ASSEDSHVITSYHRGVFKQTGTGHFSPIGGYHAGKDMV-----LILDVA 182
D + H +SS A S S +++S G G G+FSP+ G+ D + + L
Sbjct: 17 DPEQHHRLSSEAESLPSVIVSSQAAGNAVMLGAGYFSPLDGFMNLADALSSAQSMTLTDG 76
Query: 183 RFKYPPHWVPLTLLWEAMDTIDNAT 207
RF +P VPL L E+ D I AT
Sbjct: 77 RF-FP---VPLLCLLESADAIAGAT 97
>pdb|3H5C|B Chain B, X-Ray Structure Of Protein Z-Protein Z Inhibitor Complex
Length = 317
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 133 RHVISSASSEDSHVITSYHRGVFKQTGTGHFSPIGGYHAGKDMVLILDVARF 184
R +++ D V+T HRG + TG P+GG MVL+ V+R+
Sbjct: 260 RSSVAAMHWMDGSVVTREHRGSWFLTGVLGSQPVGGQ---AHMVLVTKVSRY 308
>pdb|3F1S|B Chain B, Crystal Structure Of Protein Z Complexed With Protein
Z-Dependent Inhibitor
Length = 283
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 133 RHVISSASSEDSHVITSYHRGVFKQTGTGHFSPIGGYHAGKDMVLILDVARF 184
R +++ D V+T HRG + TG P+GG MVL+ V+R+
Sbjct: 219 RSSVAAMHWMDGSVVTREHRGSWFLTGVLGSQPVGGQ---AHMVLVTKVSRY 267
>pdb|3VUU|A Chain A, Crystal Structure Of The Merozoite Surface Protein Mspdbl2
From P. Falciparum
Length = 305
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 111 AFCNGANVEAFRTNESSIDEFRRHVISSASSEDSHVITSYHRGVFK--QTGTGHFSPIGG 168
+ C ++ FRT + +F + + S ASSE + T ++ + K Q F+ IG
Sbjct: 55 SLCLRITLQDFRTKKKKEGDFEKFIYSYASSEARKLRTIHNNNLEKAHQAIRYSFADIGN 114
Query: 169 YHAGKDMV 176
G DM+
Sbjct: 115 IIRGDDMM 122
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,936,043
Number of Sequences: 62578
Number of extensions: 539319
Number of successful extensions: 1298
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1294
Number of HSP's gapped (non-prelim): 7
length of query: 494
length of database: 14,973,337
effective HSP length: 103
effective length of query: 391
effective length of database: 8,527,803
effective search space: 3334370973
effective search space used: 3334370973
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)