BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011054
(494 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P47037|SMC3_YEAST Structural maintenance of chromosomes protein 3 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SMC3 PE=1
SV=1
Length = 1230
Score = 37.7 bits (86), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 103/203 (50%), Gaps = 28/203 (13%)
Query: 93 EEAKLREAASLEKHVLLK-KLRDALESLRGRVAGRNKDD--VEEAIAMVEALAVQLTQ-- 147
++AKLRE+ +K + K++D + + RN D ++E +++E +L++
Sbjct: 297 QQAKLRESEISQKLTNVNVKIKDVQQQIESNEEQRNLDSATLKEIKSIIEQRKQKLSKIL 356
Query: 148 -REGELIQEKAEVK--------KLADFLKKASEDAK-KLVDEERAFARAEIESARAAVQR 197
R EL +E+A K K D + K E A+ K DE + +EIE ++++Q
Sbjct: 357 PRYQELTKEEAMYKLQLASLQQKQRDLILKKGEYARFKSKDERDTWIHSEIEELKSSIQN 416
Query: 198 VEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQPS---KVMDMEHELRALRIQLA 254
+ E L+ QM R S ++ + + +E++E I ++ P ++ D + EL L+ +L+
Sbjct: 417 LNE-LESQLQMDRTSLRKQYSAIDEEIEEL--IDSINGPDTKGQLEDFDSELIHLKQKLS 473
Query: 255 EKSKCSLLLRKELAMSKRIEEKL 277
E SL RKEL R E+KL
Sbjct: 474 E----SLDTRKELW---RKEQKL 489
>sp|Q5GN48|DMD_PIG Dystrophin OS=Sus scrofa GN=DMD PE=1 SV=1
Length = 3674
Score = 34.3 bits (77), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 94/182 (51%), Gaps = 15/182 (8%)
Query: 79 NKFEKGLAAAAKLSEEAKLREAASLEKHVLLKKLRDALESLRGRVAGRNKDDVEEAIAMV 138
+ EK LA+ + +E K++E +++ L+K ++ L+++R + G ++D A V
Sbjct: 1890 DDIEKKLASLPEPQDEKKIKE---IDRE--LQKKKEELDAVRRQAEGLSEDG---AAMAV 1941
Query: 139 EALAVQLTQREGELIQEKAEVKKLADF--LKKASEDAKKLVDEERAFARAEIESAR-AAV 195
E +QL++R E+ + A ++L +F + E++ ++ E+ + + SA +
Sbjct: 1942 EPTQIQLSKRWREIESKFAHFRRL-NFAQIHTVHEESVMVMTEDMPLEISYVPSAYLTEI 2000
Query: 196 QRVEESLQEHEQMSRASG--KQDFEELMKEVQEARRIK-MLHQPSKVMDMEHELRALRIQ 252
V ++L E EQ+ A +DFE+L K+ + + IK L Q S +D+ H + +Q
Sbjct: 2001 THVSQALSEVEQLLNAPDLCAKDFEDLFKQEESLKNIKDSLQQISGRVDIIHNKKTAGLQ 2060
Query: 253 LA 254
A
Sbjct: 2061 SA 2062
>sp|Q5ZIB2|FBF1_CHICK Fas-binding factor 1 homolog OS=Gallus gallus GN=FBF1 PE=2 SV=1
Length = 1132
Score = 33.9 bits (76), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 64/118 (54%), Gaps = 9/118 (7%)
Query: 142 AVQL-TQREG---ELIQEKAEVKKLADFLKKASEDAKK---LVDEERAFARAEIESARAA 194
A+QL +QREG L +E+AE+K + LK E + L+DE R E E + A
Sbjct: 904 ALQLDSQREGTIMSLAKEQAELKVRSRELKVKEEQLARDRLLLDEAWHELRLEKEKVKGA 963
Query: 195 VQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQPSKVMDMEHELRALRIQ 252
R+ + +E + MS+ S Q +EE + +Q+A RI+ HQ +++ M+ L L+ Q
Sbjct: 964 TLRIRQQEEEIKNMSKLSA-QKYEEGERALQDACRIESEHQ-ARLQVMQQHLEQLKQQ 1019
>sp|Q9ESK9|RBCC1_MOUSE RB1-inducible coiled-coil protein 1 OS=Mus musculus GN=Rb1cc1 PE=1
SV=3
Length = 1588
Score = 33.5 bits (75), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 88/179 (49%), Gaps = 29/179 (16%)
Query: 111 KLRDALESLRGRVAGRNKDDV-------EEAIAMVEALAVQ-LTQREGELIQEKAEVKKL 162
KL++ L SL A +NKD+ ++AI V+ Q L + E + + E+K+L
Sbjct: 893 KLKENLVSLEE--ALQNKDNEFTSIKHEKDAIVCVQQEKDQKLLEMEKIMHTQHCEIKEL 950
Query: 163 ADFLKKASEDAKKLVDEERAFARAEIESARAAVQRVEES-LQEHEQMSRASGKQDFEELM 221
+ A ED KKL DE +IES RA Q +E++ L+E E Q+FE++M
Sbjct: 951 KQSREMALEDLKKLHDE-------KIESLRAEFQCLEQNHLKELEDTLHIRHTQEFEKVM 1003
Query: 222 ----------KEVQEARRIKMLH-QPSKVMDMEHELRALRIQLAEKSKCSLLLRKELAM 269
K+ + R +ML S + + E +L+ L++++++ S L ELA+
Sbjct: 1004 TDHNMSLEKLKKENQQRIDQMLESHASTIQEKEQQLQELKLKVSDLSDMRCKLEVELAL 1062
>sp|Q0V9R4|CCD39_XENTR Coiled-coil domain-containing protein 39 OS=Xenopus tropicalis
GN=ccdc39 PE=2 SV=1
Length = 945
Score = 32.3 bits (72), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 81/175 (46%), Gaps = 29/175 (16%)
Query: 52 LSMKEVVARETAQLLEQQKRLSVRDLANKFEKGLAAAAKLSEEAKLREAASLEKHVLLKK 111
L KE + +E Q L+ S D ++EK ++AA + + AKLR E+ ++ +
Sbjct: 255 LREKESIIKEKIQFLQ-----SEIDNNKEYEKKISAAERQA--AKLRLELQ-EQEIIRGR 306
Query: 112 LRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASE 171
L+D L+SL+G V R D+E V +L + R+ L + L+D L +E
Sbjct: 307 LQDELDSLKG-VVDRTASDLETMRTEVTSLKKDIRNRQNRLQMAQEYNDGLSDKLNFVTE 365
Query: 172 DAKKLVDEERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQE 226
A L EERA R+EE +E E+ + D E +K+++E
Sbjct: 366 SALSL--EERAL-------------RMEEMFKEQEKTVK-----DLEVQLKQIRE 400
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.129 0.351
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 164,489,382
Number of Sequences: 539616
Number of extensions: 6574208
Number of successful extensions: 34470
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 1710
Number of HSP's that attempted gapping in prelim test: 31342
Number of HSP's gapped (non-prelim): 3868
length of query: 494
length of database: 191,569,459
effective HSP length: 122
effective length of query: 372
effective length of database: 125,736,307
effective search space: 46773906204
effective search space used: 46773906204
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)