Query 011054
Match_columns 494
No_of_seqs 37 out of 39
Neff 2.5
Searched_HMMs 46136
Date Fri Mar 29 07:36:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011054.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011054hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00409 recombination and DNA 90.8 3.1 6.6E-05 46.8 12.5 81 125-205 512-596 (782)
2 PF08317 Spc7: Spc7 kinetochor 88.0 32 0.00069 34.7 16.3 102 130-232 167-268 (325)
3 PRK09174 F0F1 ATP synthase sub 87.3 12 0.00025 36.0 12.1 52 104-159 70-121 (204)
4 PRK04863 mukB cell division pr 84.8 84 0.0018 38.6 19.9 90 183-273 380-471 (1486)
5 PRK09039 hypothetical protein; 84.6 44 0.00096 34.4 15.4 120 141-269 44-183 (343)
6 smart00787 Spc7 Spc7 kinetocho 83.6 31 0.00067 35.3 13.7 140 107-253 140-280 (312)
7 TIGR01069 mutS2 MutS2 family p 82.8 16 0.00035 41.3 12.4 56 408-463 693-757 (771)
8 PF09726 Macoilin: Transmembra 82.6 21 0.00046 40.2 13.1 36 237-272 545-580 (697)
9 PRK08476 F0F1 ATP synthase sub 81.8 39 0.00084 30.4 12.7 20 105-124 25-44 (141)
10 PRK08476 F0F1 ATP synthase sub 81.2 30 0.00065 31.1 11.3 24 166-189 68-91 (141)
11 KOG0994 Extracellular matrix g 80.6 1.3E+02 0.0028 37.1 18.6 85 183-268 1644-1741(1758)
12 TIGR01843 type_I_hlyD type I s 79.9 47 0.001 32.8 13.1 22 246-267 248-269 (423)
13 PRK13461 F0F1 ATP synthase sub 78.9 37 0.00081 30.5 11.2 50 105-158 23-72 (159)
14 PRK13454 F0F1 ATP synthase sub 78.2 60 0.0013 30.4 15.0 78 105-189 49-126 (181)
15 TIGR02168 SMC_prok_B chromosom 77.5 1.2E+02 0.0027 33.6 20.2 10 368-377 599-608 (1179)
16 PF12777 MT: Microtubule-bindi 76.9 49 0.0011 33.6 12.6 91 131-221 10-110 (344)
17 PF12128 DUF3584: Protein of u 76.2 91 0.002 36.9 16.0 74 131-204 637-710 (1201)
18 PF12325 TMF_TATA_bd: TATA ele 75.8 62 0.0013 29.3 13.1 87 134-228 14-109 (120)
19 PF05557 MAD: Mitotic checkpoi 75.3 49 0.0011 36.7 13.0 243 99-381 400-704 (722)
20 TIGR01144 ATP_synt_b ATP synth 73.6 63 0.0014 28.4 11.3 48 105-156 13-60 (147)
21 TIGR03545 conserved hypothetic 72.9 1.2E+02 0.0026 33.6 15.0 98 109-223 173-270 (555)
22 TIGR02169 SMC_prok_A chromosom 72.1 1.7E+02 0.0038 32.8 21.4 20 367-388 535-554 (1164)
23 PRK07353 F0F1 ATP synthase sub 71.7 68 0.0015 27.9 13.3 51 104-158 22-72 (140)
24 TIGR01843 type_I_hlyD type I s 70.3 47 0.001 32.8 10.4 28 179-206 210-237 (423)
25 KOG0977 Nuclear envelope prote 69.8 1.9E+02 0.0042 32.4 18.4 62 76-140 85-155 (546)
26 PRK13428 F0F1 ATP synthase sub 68.6 98 0.0021 32.9 12.9 27 105-139 19-45 (445)
27 TIGR01147 V_ATP_synt_G vacuola 68.6 92 0.002 28.2 11.1 78 168-266 13-101 (113)
28 KOG0161 Myosin class II heavy 67.8 3.5E+02 0.0077 34.7 21.6 150 114-267 1403-1581(1930)
29 CHL00118 atpG ATP synthase CF0 67.5 97 0.0021 28.1 13.3 20 105-124 40-59 (156)
30 PF10186 Atg14: UV radiation r 67.4 1.1E+02 0.0025 28.8 13.6 43 185-228 62-104 (302)
31 PF14443 DBC1: DBC1 66.1 2.2 4.7E-05 39.2 0.3 15 301-316 54-68 (126)
32 PRK13460 F0F1 ATP synthase sub 66.0 76 0.0017 29.1 10.2 48 105-156 34-81 (173)
33 PRK06231 F0F1 ATP synthase sub 65.9 1.3E+02 0.0027 29.0 12.0 19 105-123 66-84 (205)
34 TIGR02168 SMC_prok_B chromosom 65.0 2.3E+02 0.0051 31.6 20.6 27 242-268 864-890 (1179)
35 PF03179 V-ATPase_G: Vacuolar 64.6 88 0.0019 26.5 12.1 32 166-197 9-40 (105)
36 PF14915 CCDC144C: CCDC144C pr 64.5 1.8E+02 0.0039 30.7 13.4 128 128-268 40-189 (305)
37 PF00038 Filament: Intermediat 62.8 1.2E+02 0.0026 29.5 11.4 145 110-257 28-182 (312)
38 TIGR01010 BexC_CtrB_KpsE polys 61.6 1.1E+02 0.0025 30.6 11.3 85 170-256 168-261 (362)
39 KOG0161 Myosin class II heavy 61.6 4.6E+02 0.0099 33.8 20.2 140 111-255 1034-1189(1930)
40 TIGR03545 conserved hypothetic 61.6 31 0.00068 37.9 8.0 88 310-400 326-427 (555)
41 TIGR00606 rad50 rad50. This fa 61.3 3.3E+02 0.0071 32.7 16.5 30 111-140 807-836 (1311)
42 PF09730 BicD: Microtubule-ass 61.2 3.1E+02 0.0068 31.7 16.0 130 141-286 39-201 (717)
43 PRK10930 FtsH protease regulat 61.1 1.3E+02 0.0027 32.3 12.0 85 139-224 249-334 (419)
44 PRK13453 F0F1 ATP synthase sub 59.2 1.3E+02 0.0029 27.7 10.5 70 105-192 36-105 (173)
45 PRK13455 F0F1 ATP synthase sub 58.6 1.5E+02 0.0033 27.4 11.1 27 166-192 88-114 (184)
46 PF05529 Bap31: B-cell recepto 58.5 46 0.00099 30.8 7.4 31 211-256 157-187 (192)
47 PRK06568 F0F1 ATP synthase sub 58.5 1.6E+02 0.0035 27.6 11.3 77 107-190 24-100 (154)
48 COG1566 EmrA Multidrug resista 57.8 1.7E+02 0.0037 30.8 12.1 77 130-206 92-171 (352)
49 TIGR02680 conserved hypothetic 57.7 3.5E+02 0.0075 33.0 16.0 168 97-268 210-385 (1353)
50 PRK00106 hypothetical protein; 57.5 2.7E+02 0.0058 31.1 14.0 53 359-417 290-349 (535)
51 PRK05759 F0F1 ATP synthase sub 57.1 1.4E+02 0.003 26.4 13.2 76 106-188 23-98 (156)
52 CHL00118 atpG ATP synthase CF0 56.6 1.6E+02 0.0034 26.8 10.9 19 169-187 86-104 (156)
53 PRK07352 F0F1 ATP synthase sub 56.4 1.6E+02 0.0035 27.0 11.1 31 165-195 79-109 (174)
54 PRK14471 F0F1 ATP synthase sub 56.2 1.6E+02 0.0034 26.7 10.9 20 105-124 26-45 (164)
55 TIGR00606 rad50 rad50. This fa 55.0 4.5E+02 0.0097 31.6 24.1 100 128-227 873-982 (1311)
56 PF05957 DUF883: Bacterial pro 54.6 82 0.0018 26.2 7.7 48 159-206 11-58 (94)
57 PRK12704 phosphodiesterase; Pr 54.6 3.3E+02 0.0071 29.9 14.1 13 373-385 284-296 (520)
58 PF04111 APG6: Autophagy prote 53.9 1.4E+02 0.003 30.6 10.5 85 260-345 122-234 (314)
59 PRK04778 septation ring format 53.7 3.3E+02 0.0072 29.7 16.8 36 239-274 399-434 (569)
60 PRK14473 F0F1 ATP synthase sub 53.6 1.7E+02 0.0037 26.4 13.3 47 105-155 26-72 (164)
61 cd03407 Band_7_4 A subgroup of 53.6 1.4E+02 0.003 29.0 10.0 72 128-205 142-213 (262)
62 PRK09173 F0F1 ATP synthase sub 53.4 1.7E+02 0.0037 26.3 11.0 31 166-196 63-93 (159)
63 TIGR03007 pepcterm_ChnLen poly 53.4 2E+02 0.0043 30.0 11.8 78 178-256 210-294 (498)
64 cd07700 IgV_CD8_beta Immunoglo 52.4 67 0.0014 26.6 6.8 65 289-357 5-74 (107)
65 PRK13460 F0F1 ATP synthase sub 52.4 1.9E+02 0.0041 26.6 12.7 31 166-196 77-107 (173)
66 PF02841 GBP_C: Guanylate-bind 52.2 2.2E+02 0.0048 28.3 11.4 82 153-239 182-266 (297)
67 PRK05759 F0F1 ATP synthase sub 51.7 1.7E+02 0.0037 25.8 10.9 30 165-194 64-93 (156)
68 PRK14472 F0F1 ATP synthase sub 50.7 2E+02 0.0044 26.4 10.9 69 105-191 36-104 (175)
69 PRK06231 F0F1 ATP synthase sub 50.5 2.3E+02 0.005 27.2 10.9 20 168-187 111-130 (205)
70 PRK08475 F0F1 ATP synthase sub 50.2 2.1E+02 0.0046 26.4 11.1 25 165-189 82-106 (167)
71 PRK09173 F0F1 ATP synthase sub 49.3 2E+02 0.0043 25.9 10.9 72 112-190 27-98 (159)
72 PRK10476 multidrug resistance 48.2 2.3E+02 0.005 28.2 10.9 7 383-389 315-321 (346)
73 TIGR03825 FliH_bacil flagellar 48.0 2.8E+02 0.006 27.2 12.4 26 166-191 46-71 (255)
74 PRK09039 hypothetical protein; 47.7 3.4E+02 0.0074 28.1 15.5 44 183-227 141-184 (343)
75 PRK13428 F0F1 ATP synthase sub 47.5 2E+02 0.0043 30.7 10.9 59 144-202 29-87 (445)
76 PRK03963 V-type ATP synthase s 47.5 1.6E+02 0.0034 27.2 9.1 36 163-198 9-44 (198)
77 PF03962 Mnd1: Mnd1 family; I 47.5 2E+02 0.0043 27.5 9.9 49 176-228 100-148 (188)
78 PRK01005 V-type ATP synthase s 47.2 1.9E+02 0.0041 28.2 9.9 23 165-187 43-65 (207)
79 PRK08475 F0F1 ATP synthase sub 46.4 2.4E+02 0.0053 26.1 10.9 52 148-199 54-105 (167)
80 PF12240 Angiomotin_C: Angiomo 46.1 2.5E+02 0.0054 28.2 10.5 139 105-266 22-165 (205)
81 PRK11637 AmiB activator; Provi 46.1 3.7E+02 0.008 28.0 20.7 39 411-455 381-419 (428)
82 PRK03598 putative efflux pump 46.0 1.3E+02 0.0028 29.7 8.7 22 351-372 256-278 (331)
83 PF05597 Phasin: Poly(hydroxya 45.4 2.5E+02 0.0054 25.9 10.4 41 148-189 46-86 (132)
84 CHL00019 atpF ATP synthase CF0 45.4 2.6E+02 0.0055 26.0 10.9 29 165-193 84-112 (184)
85 TIGR03321 alt_F1F0_F0_B altern 44.5 3.1E+02 0.0067 26.7 11.1 26 166-191 66-91 (246)
86 PF02403 Seryl_tRNA_N: Seryl-t 44.1 1.9E+02 0.0042 24.3 11.0 97 103-203 2-98 (108)
87 CHL00019 atpF ATP synthase CF0 44.1 2.7E+02 0.0058 25.9 11.1 25 172-196 80-104 (184)
88 PRK02224 chromosome segregatio 43.9 5.1E+02 0.011 29.1 19.9 36 236-271 411-446 (880)
89 PRK14472 F0F1 ATP synthase sub 43.8 2.6E+02 0.0057 25.7 13.3 51 148-198 50-100 (175)
90 PLN02320 seryl-tRNA synthetase 43.7 2.4E+02 0.0051 31.3 11.0 99 101-207 65-165 (502)
91 PF04201 TPD52: Tumour protein 43.3 56 0.0012 31.5 5.5 26 242-267 41-66 (162)
92 PRK09174 F0F1 ATP synthase sub 42.4 3.3E+02 0.0071 26.4 12.6 31 164-194 112-142 (204)
93 TIGR01005 eps_transp_fam exopo 41.9 5.3E+02 0.012 28.7 14.2 77 178-255 243-334 (754)
94 PRK14475 F0F1 ATP synthase sub 41.8 2.8E+02 0.0061 25.4 11.1 31 164-194 69-99 (167)
95 PF09731 Mitofilin: Mitochondr 41.4 4.8E+02 0.011 28.1 17.9 77 173-273 365-442 (582)
96 PRK07353 F0F1 ATP synthase sub 40.8 2.5E+02 0.0054 24.5 11.1 31 164-194 64-94 (140)
97 PF13779 DUF4175: Domain of un 40.7 3.2E+02 0.0069 32.0 11.9 147 107-267 427-611 (820)
98 PF07888 CALCOCO1: Calcium bin 40.5 5.9E+02 0.013 28.8 13.9 52 141-193 169-220 (546)
99 PLN03144 Carbon catabolite rep 40.1 57 0.0012 36.6 5.8 41 330-371 180-228 (606)
100 PF07282 OrfB_Zn_ribbon: Putat 40.1 15 0.00032 28.6 1.1 50 418-474 19-69 (69)
101 PRK01919 tatB sec-independent 39.8 93 0.002 30.2 6.5 23 308-331 132-154 (169)
102 PF09177 Syntaxin-6_N: Syntaxi 39.2 1E+02 0.0022 26.0 6.0 59 103-166 35-93 (97)
103 PF08317 Spc7: Spc7 kinetochor 39.0 4.3E+02 0.0094 26.8 13.1 17 59-75 120-136 (325)
104 COG2433 Uncharacterized conser 39.0 1.5E+02 0.0032 34.0 8.7 32 241-272 478-509 (652)
105 PHA02562 46 endonuclease subun 38.8 4.9E+02 0.011 27.3 12.1 75 131-206 311-385 (562)
106 PRK06569 F0F1 ATP synthase sub 38.4 2.4E+02 0.0053 26.8 8.9 75 103-195 26-100 (155)
107 PF15619 Lebercilin: Ciliary p 38.1 3.6E+02 0.0079 26.1 10.2 103 140-257 86-191 (194)
108 COG2433 Uncharacterized conser 38.1 5.5E+02 0.012 29.7 12.8 96 132-240 425-520 (652)
109 COG1666 Uncharacterized protei 38.1 20 0.00043 34.6 1.7 23 117-139 125-150 (165)
110 PF02841 GBP_C: Guanylate-bind 37.9 4.2E+02 0.0092 26.4 13.5 20 141-160 195-214 (297)
111 PRK12704 phosphodiesterase; Pr 37.8 5.9E+02 0.013 28.0 15.6 28 167-194 45-72 (520)
112 PRK10807 paraquat-inducible pr 37.8 1.4E+02 0.0031 32.8 8.3 109 48-156 408-534 (547)
113 PF14257 DUF4349: Domain of un 37.5 3.1E+02 0.0068 26.5 9.8 89 102-201 97-191 (262)
114 PF15619 Lebercilin: Ciliary p 37.5 3.9E+02 0.0085 25.9 11.6 92 109-207 98-192 (194)
115 PRK06568 F0F1 ATP synthase sub 37.4 3.6E+02 0.0078 25.4 13.3 33 165-197 64-96 (154)
116 PRK13453 F0F1 ATP synthase sub 37.1 3.4E+02 0.0074 25.1 13.3 51 147-197 49-99 (173)
117 cd03404 Band_7_HflK Band_7_Hfl 37.1 3.8E+02 0.0083 25.6 11.0 104 99-209 134-250 (266)
118 PF07200 Mod_r: Modifier of ru 37.0 3E+02 0.0065 24.4 13.2 101 128-230 33-139 (150)
119 KOG0996 Structural maintenance 36.9 8.4E+02 0.018 30.4 14.6 25 83-108 722-748 (1293)
120 TIGR03017 EpsF chain length de 36.6 4.8E+02 0.01 26.7 11.8 39 216-255 262-300 (444)
121 cd05852 Ig5_Contactin-1 Fifth 36.1 51 0.0011 25.9 3.5 22 290-314 1-22 (73)
122 KOG0993 Rab5 GTPase effector R 36.1 2.9E+02 0.0062 30.8 10.0 119 145-268 11-182 (542)
123 PHA02562 46 endonuclease subun 35.8 5.4E+02 0.012 27.0 20.7 33 239-271 374-406 (562)
124 TIGR03319 YmdA_YtgF conserved 35.7 6.3E+02 0.014 27.8 14.1 26 360-390 270-295 (514)
125 COG2811 NtpF Archaeal/vacuolar 35.3 2.1E+02 0.0046 26.0 7.6 40 166-205 23-63 (108)
126 TIGR01010 BexC_CtrB_KpsE polys 35.2 3.4E+02 0.0074 27.4 9.9 23 64-86 65-87 (362)
127 PRK05431 seryl-tRNA synthetase 35.0 4.9E+02 0.011 27.7 11.4 97 103-207 2-101 (425)
128 PF00430 ATP-synt_B: ATP synth 34.6 2.8E+02 0.0061 23.4 8.9 24 167-190 61-84 (132)
129 TIGR01933 hflK HflK protein. H 34.1 4.3E+02 0.0093 25.3 11.4 39 166-204 180-218 (261)
130 PF07851 TMPIT: TMPIT-like pro 34.1 2.5E+02 0.0055 29.6 9.0 74 151-228 8-81 (330)
131 COG1196 Smc Chromosome segrega 33.6 8.9E+02 0.019 28.9 18.7 19 239-257 886-904 (1163)
132 PF08232 Striatin: Striatin fa 33.6 1.2E+02 0.0026 27.6 5.9 19 227-254 52-70 (134)
133 KOG4246 Predicted DNA-binding 33.5 13 0.00028 43.5 -0.3 33 300-345 536-568 (1194)
134 TIGR03319 YmdA_YtgF conserved 33.2 6.9E+02 0.015 27.5 15.9 12 346-357 236-247 (514)
135 PTZ00464 SNF-7-like protein; P 33.0 4.9E+02 0.011 25.6 12.8 99 128-227 13-136 (211)
136 PLN02678 seryl-tRNA synthetase 33.0 5.8E+02 0.013 27.8 11.7 90 114-207 17-106 (448)
137 PF04461 DUF520: Protein of un 32.9 23 0.00049 34.0 1.3 19 122-140 129-147 (160)
138 COG1566 EmrA Multidrug resista 32.7 6.1E+02 0.013 26.9 11.5 66 134-199 103-171 (352)
139 PF05103 DivIVA: DivIVA protei 32.4 37 0.00081 28.9 2.4 73 125-197 17-100 (131)
140 PRK03918 chromosome segregatio 31.9 7.6E+02 0.017 27.6 19.2 34 116-149 505-538 (880)
141 PRK10404 hypothetical protein; 30.9 3.6E+02 0.0078 23.8 8.2 45 161-205 20-64 (101)
142 PF10168 Nup88: Nuclear pore c 30.8 8.8E+02 0.019 28.0 13.8 27 152-178 574-600 (717)
143 TIGR01144 ATP_synt_b ATP synth 30.5 3.8E+02 0.0082 23.6 11.4 31 165-195 55-85 (147)
144 PRK02292 V-type ATP synthase s 30.3 4.4E+02 0.0095 24.3 9.8 23 166-188 33-55 (188)
145 PF11657 Activator-TraM: Trans 30.2 4.8E+02 0.01 24.7 10.9 62 170-233 63-124 (144)
146 PRK00409 recombination and DNA 30.1 9.1E+02 0.02 27.9 14.2 29 434-462 739-767 (782)
147 PRK13729 conjugal transfer pil 29.8 75 0.0016 34.9 4.7 13 241-253 108-120 (475)
148 TIGR03007 pepcterm_ChnLen poly 29.6 6.3E+02 0.014 26.4 11.1 31 241-271 352-382 (498)
149 PRK10780 periplasmic chaperone 29.6 4.4E+02 0.0096 24.1 9.9 46 140-188 47-92 (165)
150 PRK14471 F0F1 ATP synthase sub 29.2 4.3E+02 0.0094 23.9 13.2 9 173-181 76-84 (164)
151 KOG0996 Structural maintenance 29.2 1.2E+03 0.026 29.1 16.6 141 107-268 885-1043(1293)
152 TIGR03185 DNA_S_dndD DNA sulfu 29.2 8.2E+02 0.018 27.1 13.6 58 326-388 572-636 (650)
153 PF07888 CALCOCO1: Calcium bin 29.1 8.9E+02 0.019 27.5 18.2 28 242-269 288-315 (546)
154 KOG0994 Extracellular matrix g 29.0 1.2E+03 0.026 29.5 14.2 39 187-225 1592-1632(1758)
155 PRK06328 type III secretion sy 28.9 5.3E+02 0.011 25.2 9.8 37 340-378 161-198 (223)
156 KOG1772 Vacuolar H+-ATPase V1 28.8 3.5E+02 0.0076 24.9 7.9 39 144-182 10-49 (108)
157 PF03179 V-ATPase_G: Vacuolar 28.6 3.6E+02 0.0077 22.9 7.6 32 164-195 18-49 (105)
158 TIGR00831 a_cpa1 Na+/H+ antipo 28.6 2E+02 0.0043 31.0 7.5 63 160-234 401-463 (525)
159 TIGR00634 recN DNA repair prot 28.6 7.9E+02 0.017 26.7 12.5 42 212-254 298-339 (563)
160 PF09726 Macoilin: Transmembra 28.6 9.6E+02 0.021 27.7 15.5 47 102-155 422-474 (697)
161 KOG0999 Microtubule-associated 28.5 9.9E+02 0.021 27.9 12.8 106 156-265 14-135 (772)
162 PF07106 TBPIP: Tat binding pr 28.4 74 0.0016 29.0 3.7 72 192-271 32-106 (169)
163 PF11740 KfrA_N: Plasmid repli 28.3 3.2E+02 0.007 23.0 7.3 23 62-84 10-32 (120)
164 TIGR02231 conserved hypothetic 28.0 7.7E+02 0.017 26.4 13.7 26 245-270 146-171 (525)
165 cd00099 IgV Immunoglobulin var 27.8 1.1E+02 0.0024 24.2 4.2 52 289-343 5-56 (105)
166 PF05130 FlgN: FlgN protein; 27.5 3.6E+02 0.0077 22.3 7.8 48 107-154 15-62 (143)
167 PF09969 DUF2203: Uncharacteri 27.4 2.2E+02 0.0047 25.7 6.4 59 188-257 5-63 (120)
168 PF01991 vATP-synt_E: ATP synt 27.3 4.6E+02 0.01 23.6 8.7 25 164-188 12-36 (198)
169 COG0675 Transposase and inacti 27.1 35 0.00076 31.8 1.5 86 382-479 259-350 (364)
170 PRK10884 SH3 domain-containing 26.7 6.1E+02 0.013 24.8 10.0 77 184-272 91-167 (206)
171 PF12999 PRKCSH-like: Glucosid 26.7 2.5E+02 0.0054 27.3 7.1 54 174-228 120-173 (176)
172 TIGR00998 8a0101 efflux pump m 26.6 6E+02 0.013 24.7 10.5 80 141-228 78-159 (334)
173 TIGR01730 RND_mfp RND family e 26.5 5.6E+02 0.012 24.3 9.5 21 148-168 76-96 (322)
174 PF10174 Cast: RIM-binding pro 25.9 1.1E+03 0.025 27.6 16.4 45 184-228 434-478 (775)
175 cd00336 Ribosomal_L22 Ribosoma 25.8 1.9E+02 0.0042 24.6 5.6 27 109-142 12-38 (105)
176 COG1012 PutA NAD-dependent ald 25.7 2.8E+02 0.0062 29.7 8.0 76 84-179 41-117 (472)
177 PF07926 TPR_MLP1_2: TPR/MLP1/ 25.7 4.8E+02 0.01 23.2 10.0 57 149-210 48-104 (132)
178 PF01322 Cytochrom_C_2: Cytoch 25.6 4.3E+02 0.0093 22.6 10.6 94 102-201 4-113 (122)
179 KOG0963 Transcription factor/C 25.6 9E+02 0.02 28.0 11.9 85 180-266 304-412 (629)
180 PF10174 Cast: RIM-binding pro 25.6 1.1E+03 0.025 27.6 16.2 155 54-208 404-584 (775)
181 PRK13454 F0F1 ATP synthase sub 25.4 5.7E+02 0.012 24.0 10.6 30 165-194 91-120 (181)
182 PRK13461 F0F1 ATP synthase sub 25.0 5.1E+02 0.011 23.3 11.4 24 166-189 66-89 (159)
183 TIGR03321 alt_F1F0_F0_B altern 25.0 6.5E+02 0.014 24.5 10.9 15 351-365 175-189 (246)
184 cd05880 Ig_EVA1 Immunoglobulin 25.0 76 0.0017 27.0 3.0 37 289-325 12-49 (115)
185 TIGR01005 eps_transp_fam exopo 25.0 9.9E+02 0.021 26.6 19.7 46 184-229 343-390 (754)
186 PRK14474 F0F1 ATP synthase sub 24.8 6.9E+02 0.015 24.8 11.4 88 139-226 39-127 (250)
187 PF08826 DMPK_coil: DMPK coile 24.5 3.3E+02 0.0072 22.4 6.4 45 183-228 15-59 (61)
188 TIGR01837 PHA_granule_1 poly(h 23.8 5.2E+02 0.011 23.0 9.4 72 148-225 33-106 (118)
189 KOG4809 Rab6 GTPase-interactin 23.5 1.2E+03 0.026 27.0 14.7 70 138-207 375-456 (654)
190 PRK15136 multidrug efflux syst 23.5 5.5E+02 0.012 26.5 9.3 73 141-228 97-171 (390)
191 PRK09098 type III secretion sy 23.4 7.3E+02 0.016 24.5 10.5 30 166-195 45-74 (233)
192 CHL00034 rpl22 ribosomal prote 23.4 2.1E+02 0.0046 25.6 5.6 47 108-185 20-66 (117)
193 PF09012 FeoC: FeoC like trans 23.2 70 0.0015 25.2 2.3 25 62-86 5-29 (69)
194 PRK09578 periplasmic multidrug 23.1 5.7E+02 0.012 26.0 9.2 20 183-202 150-169 (385)
195 COG1390 NtpE Archaeal/vacuolar 23.0 6.8E+02 0.015 24.3 9.2 72 158-229 3-76 (194)
196 TIGR03185 DNA_S_dndD DNA sulfu 23.0 1.1E+03 0.023 26.2 22.1 47 183-229 388-435 (650)
197 PRK05412 putative nucleotide-b 22.9 51 0.0011 31.7 1.7 18 122-139 129-146 (161)
198 KOG4552 Vitamin-D-receptor int 22.9 3E+02 0.0065 28.2 7.1 62 164-228 61-122 (272)
199 cd05899 IgV_TCR_beta Immunoglo 22.9 2.1E+02 0.0044 23.5 5.1 36 288-327 11-46 (110)
200 PF00769 ERM: Ezrin/radixin/mo 22.8 7.6E+02 0.016 24.5 15.0 44 216-274 76-119 (246)
201 KOG4557 Origin recognition com 22.6 94 0.002 31.8 3.6 46 63-130 85-130 (262)
202 KOG0249 LAR-interacting protei 22.6 1.4E+03 0.03 27.5 14.6 181 57-242 72-270 (916)
203 PRK15030 multidrug efflux syst 22.2 6.2E+02 0.013 26.0 9.3 19 150-168 117-135 (397)
204 PF04388 Hamartin: Hamartin pr 22.1 9.2E+02 0.02 27.4 11.3 24 231-254 618-645 (668)
205 KOG4807 F-actin binding protei 21.8 7.9E+02 0.017 27.5 10.3 47 210-267 405-451 (593)
206 PRK14473 F0F1 ATP synthase sub 21.8 6E+02 0.013 23.0 12.9 50 147-196 39-88 (164)
207 PF11629 Mst1_SARAH: C termina 21.7 1E+02 0.0022 24.8 2.9 22 240-261 22-43 (49)
208 TIGR03794 NHPM_micro_HlyD NHPM 21.7 9E+02 0.019 24.9 16.8 24 244-267 227-250 (421)
209 PRK04424 fatty acid biosynthes 21.6 1.9E+02 0.0041 27.1 5.2 49 60-116 10-58 (185)
210 PF03835 Rad4: Rad4 transgluta 21.5 37 0.00081 30.3 0.5 33 446-481 69-102 (145)
211 cd04276 ZnMc_MMP_like_2 Zinc-d 21.5 1.4E+02 0.003 28.8 4.3 48 293-351 48-97 (197)
212 PRK01558 V-type ATP synthase s 21.4 6.3E+02 0.014 24.0 8.6 64 160-226 22-85 (198)
213 smart00340 HALZ homeobox assoc 21.4 72 0.0016 25.2 1.9 25 216-242 20-44 (44)
214 KOG3130 Uncharacterized conser 21.3 1.9E+02 0.004 32.0 5.6 176 163-356 73-271 (514)
215 COG0172 SerS Seryl-tRNA synthe 21.0 7.2E+02 0.016 27.3 9.8 101 109-211 4-107 (429)
216 PRK14475 F0F1 ATP synthase sub 21.0 6.5E+02 0.014 23.1 10.9 15 109-123 32-46 (167)
217 COG1842 PspA Phage shock prote 20.9 8.3E+02 0.018 24.3 15.3 81 129-213 106-186 (225)
218 PF10455 BAR_2: Bin/amphiphysi 20.9 8.1E+02 0.018 25.5 9.8 95 157-267 145-252 (289)
219 COG0711 AtpF F0F1-type ATP syn 20.7 6.7E+02 0.015 23.1 11.1 77 106-189 25-101 (161)
220 COG0711 AtpF F0F1-type ATP syn 20.7 6.7E+02 0.015 23.1 10.8 48 147-194 37-84 (161)
221 PF08285 DPM3: Dolichol-phosph 20.7 67 0.0014 27.9 1.8 17 213-229 66-82 (91)
222 TIGR03017 EpsF chain length de 20.6 9.2E+02 0.02 24.7 12.5 8 246-253 344-351 (444)
223 cd05714 Ig_CSPGs_LP Immunoglob 20.5 2E+02 0.0044 23.4 4.5 17 304-320 19-35 (106)
224 PF05878 Phyto_Pns9_10: Phytor 20.4 68 0.0015 33.6 2.2 48 215-263 173-220 (312)
225 PF09832 DUF2059: Uncharacteri 20.4 4E+02 0.0087 20.4 6.2 42 137-189 9-50 (64)
226 PF02736 Myosin_N: Myosin N-te 20.4 94 0.002 23.0 2.3 30 330-361 2-32 (42)
227 PRK10246 exonuclease subunit S 20.3 1.5E+03 0.032 26.9 14.6 65 109-174 193-257 (1047)
228 PRK01919 tatB sec-independent 20.1 5.7E+02 0.012 25.0 8.0 10 324-333 128-137 (169)
229 PF00261 Tropomyosin: Tropomyo 20.1 8E+02 0.017 23.8 9.9 43 129-171 8-50 (237)
No 1
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=90.80 E-value=3.1 Score=46.83 Aligned_cols=81 Identities=27% Similarity=0.382 Sum_probs=59.3
Q ss_pred CCChhhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhhHH----HHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 011054 125 GRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASED----AKKLVDEERAFARAEIESARAAVQRVEE 200 (494)
Q Consensus 125 GrnKddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeD----AkkiV~eeRa~A~aEIE~ArAaV~Rve~ 200 (494)
+....++++.|.=.+..-.++-++..|+.+++.|++++-+-++..-+. -+++.++.+..|+..|+.||..+..+-.
T Consensus 512 ~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~~a~~~l~~a~~~~~~~i~ 591 (782)
T PRK00409 512 GEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIK 591 (782)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667888888888888888888888888888887777766665443 4567777777788888888877777666
Q ss_pred HHHHH
Q 011054 201 SLQEH 205 (494)
Q Consensus 201 al~Eq 205 (494)
-|++.
T Consensus 592 ~lk~~ 596 (782)
T PRK00409 592 ELRQL 596 (782)
T ss_pred HHHHh
Confidence 66654
No 2
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=88.02 E-value=32 Score=34.72 Aligned_cols=102 Identities=23% Similarity=0.391 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011054 130 DVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHEQMS 209 (494)
Q Consensus 130 dveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eeRa~A~aEIE~ArAaV~Rve~al~Eqe~~s 209 (494)
.+.+.+..+.-+-.++..+-.+|..+-...+.++.-+....-+-=.-..++=+...++|+.=|.-+..++.-+++-+...
T Consensus 167 ~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i 246 (325)
T PF08317_consen 167 KLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKI 246 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666665555555555555554444444433322222211112222333333344444444444444444333332
Q ss_pred hhcCcccHHHHHHHHHHHHhhhh
Q 011054 210 RASGKQDFEELMKEVQEARRIKM 232 (494)
Q Consensus 210 ~~s~kqd~e~L~~EvqEARRIKm 232 (494)
...++...++..+|++|.|+..
T Consensus 247 -~~~~~~k~~l~~eI~e~~~~~~ 268 (325)
T PF08317_consen 247 -EELEEQKQELLAEIAEAEKIRE 268 (325)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHH
Confidence 2233366777778888877765
No 3
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=87.32 E-value=12 Score=36.01 Aligned_cols=52 Identities=25% Similarity=0.410 Sum_probs=31.1
Q ss_pred chHHHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Q 011054 104 EKHVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEV 159 (494)
Q Consensus 104 er~vLLKkLr~~LesLrGRvaGrnKddveeaismVeaLavqltqrE~ELiQeK~EV 159 (494)
=..++++.+..+|+.=+.++.+ ++++|-.+-+-..-.+.+-|.+|.+-+.|.
T Consensus 70 L~k~~~~pI~~vLe~R~~~I~~----~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA 121 (204)
T PRK09174 70 MSRVILPRIGGIIETRRDRIAQ----DLDQAARLKQEADAAVAAYEQELAQARAKA 121 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888899999987777754 555555554444444444444444444433
No 4
>PRK04863 mukB cell division protein MukB; Provisional
Probab=84.80 E-value=84 Score=38.63 Aligned_cols=90 Identities=19% Similarity=0.187 Sum_probs=58.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccHHHHHHHHHHHHhhhhccC--CccccccHHHHHHHHHHHHHHhHHH
Q 011054 183 FARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQ--PSKVMDMEHELRALRIQLAEKSKCS 260 (494)
Q Consensus 183 ~A~aEIE~ArAaV~Rve~al~Eqe~~s~~s~kqd~e~L~~EvqEARRIKmLH~--PSKvMDmE~El~~LR~ql~eKs~~~ 260 (494)
...++++.+...+..++..+.+........ .+++..+...++...++++|-+ |--.-+++..+.....++.++....
T Consensus 380 eleeEleelEeeLeeLqeqLaelqqel~el-Q~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee~e~qL 458 (1486)
T PRK04863 380 ENEARAEAAEEEVDELKSQLADYQQALDVQ-QTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEEL 458 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555544444332222211 2367788888899999999987 3334567788888888888888888
Q ss_pred HHHHHHHHHhhhh
Q 011054 261 LLLRKELAMSKRI 273 (494)
Q Consensus 261 v~L~KEL~~~kr~ 273 (494)
..+..+|..++..
T Consensus 459 ~elE~kL~~lea~ 471 (1486)
T PRK04863 459 LSLEQKLSVAQAA 471 (1486)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888765543
No 5
>PRK09039 hypothetical protein; Validated
Probab=84.61 E-value=44 Score=34.35 Aligned_cols=120 Identities=21% Similarity=0.271 Sum_probs=61.4
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHHHH---hhHHHHHHHHH----------HHHhHHHHHH-------HHHHHHHHHHH
Q 011054 141 LAVQLTQREGELIQEKAEVKKLADFLKK---ASEDAKKLVDE----------ERAFARAEIE-------SARAAVQRVEE 200 (494)
Q Consensus 141 LavqltqrE~ELiQeK~EVkKlA~~lKq---ASeDAkkiV~e----------eRa~A~aEIE-------~ArAaV~Rve~ 200 (494)
|..++|.++.||-+-..++..|+..|.. .+.|....+.+ +|+....-.+ .+.+.....++
T Consensus 44 Ls~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~ 123 (343)
T PRK09039 44 LSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQ 123 (343)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHH
Confidence 5566777777777777777666654432 33333222222 2221111111 11222333444
Q ss_pred HHHHHHHhhhhcCcccHHHHHHHHHHHHhhhhccCCccccccHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 011054 201 SLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQPSKVMDMEHELRALRIQLAEKSKCSLLLRKELAM 269 (494)
Q Consensus 201 al~Eqe~~s~~s~kqd~e~L~~EvqEARRIKmLH~PSKvMDmE~El~~LR~ql~eKs~~~v~L~KEL~~ 269 (494)
.|.+....+..... ++..|+.+|..-|+= .-.+|.+|.++..+..++....-.|.++|..
T Consensus 124 ~L~~~k~~~se~~~-~V~~L~~qI~aLr~Q--------la~le~~L~~ae~~~~~~~~~i~~L~~~L~~ 183 (343)
T PRK09039 124 ELDSEKQVSARALA-QVELLNQQIAALRRQ--------LAALEAALDASEKRDRESQAKIADLGRRLNV 183 (343)
T ss_pred HHHHHHHHHHHhhH-HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55544444433333 555555555555543 4455666666666666777777777777753
No 6
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=83.59 E-value=31 Score=35.34 Aligned_cols=140 Identities=21% Similarity=0.238 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHhHH
Q 011054 107 VLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKAS-EDAKKLVDEERAFAR 185 (494)
Q Consensus 107 vLLKkLr~~LesLrGRvaGrnKddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqAS-eDAkkiV~eeRa~A~ 185 (494)
-|++.|+..|+.=.+.+-. .+.-+.+-+..+.-+--+|..+-.+|..|=..++.+..-+..-. ++.+++- ++=+.-.
T Consensus 140 kllegLk~~L~~~~~~l~~-D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk-~~l~~~~ 217 (312)
T smart00787 140 KLLEGLKEGLDENLEGLKE-DYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAK-EKLKKLL 217 (312)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHH-HHHHHHH
Confidence 3455555555543333221 12225566666666666777777777666666666665554422 2333443 5556667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCcccHHHHHHHHHHHHhhhhccCCccccccHHHHHHHHHHH
Q 011054 186 AEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQPSKVMDMEHELRALRIQL 253 (494)
Q Consensus 186 aEIE~ArAaV~Rve~al~Eqe~~s~~s~kqd~e~L~~EvqEARRIKmLH~PSKvMDmE~El~~LR~ql 253 (494)
.+|+..+.-+.-+++-|++-+..-... ++...++..+|++|+++.-=+... + -+|+..|+.++
T Consensus 218 ~ei~~~~~~l~e~~~~l~~l~~~I~~~-~~~k~e~~~~I~~ae~~~~~~r~~---t-~~Ei~~Lk~~~ 280 (312)
T smart00787 218 QEIMIKVKKLEELEEELQELESKIEDL-TNKKSELNTEIAEAEKKLEQCRGF---T-FKEIEKLKEQL 280 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCC---C-HHHHHHHHHHH
Confidence 777777777777777776666554433 347888999999999976333222 2 25666666554
No 7
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=82.80 E-value=16 Score=41.29 Aligned_cols=56 Identities=13% Similarity=0.090 Sum_probs=35.9
Q ss_pred ceeEEeecCceeeehhhccccccccc---------ccCCcchhhhhhhccccCCceEEEEeeccc
Q 011054 408 KMRIKLCKGKMTIAKEYYSTSMQLCG---------VRGGGNAAAQALFWQAKKGVSFVLAFESER 463 (494)
Q Consensus 408 k~RikL~KG~~t~AkE~YSssMQLCG---------vRGgg~AAa~AlfWq~rkglS~vL~fESeR 463 (494)
..++.|.--....|++.-...+.-|- +-|=|.-+=+..-|.-=+.+.+|..|....
T Consensus 693 ~~~ldl~G~~~~eA~~~l~~~ld~a~~~g~~~v~IIHGkGtG~Lr~~v~~~L~~~~~V~~f~~a~ 757 (771)
T TIGR01069 693 SLTLDLRGQRSEEALDRLEKFLNDALLAGYEVVLIIHGKGSGKLRKGVQELLKNHPKVKSFRDAP 757 (771)
T ss_pred CceEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEcCCChhHHHHHHHHHhcCCcceeeecccC
Confidence 45666655556677765555554443 445566677777777777778888887643
No 8
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=82.63 E-value=21 Score=40.25 Aligned_cols=36 Identities=28% Similarity=0.354 Sum_probs=25.5
Q ss_pred ccccccHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 011054 237 SKVMDMEHELRALRIQLAEKSKCSLLLRKELAMSKR 272 (494)
Q Consensus 237 SKvMDmE~El~~LR~ql~eKs~~~v~L~KEL~~~kr 272 (494)
.+.=|||.||+.||..|..|-..+..|.+|+.-...
T Consensus 545 ~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~ 580 (697)
T PF09726_consen 545 QRRRQLESELKKLRRELKQKEEQIRELESELQELRK 580 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334478888888888888888888888777753333
No 9
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=81.83 E-value=39 Score=30.39 Aligned_cols=20 Identities=15% Similarity=0.203 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHHhhcccC
Q 011054 105 KHVLLKKLRDALESLRGRVA 124 (494)
Q Consensus 105 r~vLLKkLr~~LesLrGRva 124 (494)
+++|.|.++.+|+.=+-++.
T Consensus 25 ~kfl~kPi~~~l~~R~~~I~ 44 (141)
T PRK08476 25 NSWLYKPLLKFMDNRNASIK 44 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56788888888887655544
No 10
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=81.24 E-value=30 Score=31.10 Aligned_cols=24 Identities=42% Similarity=0.473 Sum_probs=11.9
Q ss_pred HHHhhHHHHHHHHHHHHhHHHHHH
Q 011054 166 LKKASEDAKKLVDEERAFARAEIE 189 (494)
Q Consensus 166 lKqASeDAkkiV~eeRa~A~aEIE 189 (494)
|.+|..+|.+++++.++.|+.|.+
T Consensus 68 l~~Ar~eA~~~~~~a~~~A~~ea~ 91 (141)
T PRK08476 68 LKNAREEANKIRQKAIAKAKEEAE 91 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555544433
No 11
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=80.63 E-value=1.3e+02 Score=37.07 Aligned_cols=85 Identities=22% Similarity=0.186 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccHHHHHHHHHHHH-hhhhccCCcc-----cc-------ccHHHHHHH
Q 011054 183 FARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEAR-RIKMLHQPSK-----VM-------DMEHELRAL 249 (494)
Q Consensus 183 ~A~aEIE~ArAaV~Rve~al~Eqe~~s~~s~kqd~e~L~~EvqEAR-RIKmLH~PSK-----vM-------DmE~El~~L 249 (494)
.|..+..+|....++.++.++.-....+. .++=++.-++..+-|| |++||-+--+ +| |||-+...=
T Consensus 1644 ~a~~~a~sa~~~A~~a~q~~~~lq~~~~~-~~~l~~~r~~g~~~ar~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~ 1722 (1758)
T KOG0994|consen 1644 QAEKTAGSAKEQALSAEQGLEILQKYYEL-VDRLLEKRMEGSQAARERAEQLRTEAEKLLGQANEKLDRLKDLELEYLRN 1722 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45556677777777777777633222222 2234455555555555 5666644221 11 344444344
Q ss_pred HHHHHHHhHHHHHHHHHHH
Q 011054 250 RIQLAEKSKCSLLLRKELA 268 (494)
Q Consensus 250 R~ql~eKs~~~v~L~KEL~ 268 (494)
-++|.-|+.+.--|-|+|.
T Consensus 1723 ~~~L~~~~aeL~~Le~r~~ 1741 (1758)
T KOG0994|consen 1723 EQALEDKAAELAGLEKRVE 1741 (1758)
T ss_pred hHHHHHHHHHhhhHHHHHH
Confidence 4566667777777777775
No 12
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=79.87 E-value=47 Score=32.78 Aligned_cols=22 Identities=27% Similarity=0.194 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHH
Q 011054 246 LRALRIQLAEKSKCSLLLRKEL 267 (494)
Q Consensus 246 l~~LR~ql~eKs~~~v~L~KEL 267 (494)
+..++.++.+-....-.++..|
T Consensus 248 l~~~~~~l~~~~~~l~~~~~~l 269 (423)
T TIGR01843 248 LTEAQARLAELRERLNKARDRL 269 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444433333444444
No 13
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=78.92 E-value=37 Score=30.48 Aligned_cols=50 Identities=22% Similarity=0.304 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 011054 105 KHVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAE 158 (494)
Q Consensus 105 r~vLLKkLr~~LesLrGRvaGrnKddveeaismVeaLavqltqrE~ELiQeK~E 158 (494)
..++.|.+.+.|+.=+.++.+ ++++|-..-+-..-.+.+-|..|.+-+.|
T Consensus 23 ~~f~~kpi~~~l~~R~~~I~~----~l~~A~~~~~eA~~~~~e~~~~l~~a~~e 72 (159)
T PRK13461 23 KHFFFDKIKAVIDSRQSEIDN----KIEKADEDQKKARELKLKNERELKNAKEE 72 (159)
T ss_pred HHHhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888887776654 44444444443444444444444444443
No 14
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=78.24 E-value=60 Score=30.37 Aligned_cols=78 Identities=19% Similarity=0.273 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhH
Q 011054 105 KHVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFA 184 (494)
Q Consensus 105 r~vLLKkLr~~LesLrGRvaGrnKddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eeRa~A 184 (494)
+.+++++++.+|+.=+.++. +++++|-..-+-..-.+.+-|..|.+-|.|-..+ +..|-.+|+++.++.+..|
T Consensus 49 ~k~l~~PI~~~l~~R~~~I~----~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~i---i~~A~~ea~~~~~~~~~~A 121 (181)
T PRK13454 49 TRVALPRIGAVLAERQGTIT----NDLAAAEELKQKAVEAEKAYNKALADARAEAQRI---VAETRAEIQAELDVAIAKA 121 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 55677888888888776664 4555555554444444444555554444443332 3344445555555555555
Q ss_pred HHHHH
Q 011054 185 RAEIE 189 (494)
Q Consensus 185 ~aEIE 189 (494)
++|++
T Consensus 122 ~~e~~ 126 (181)
T PRK13454 122 DAEIA 126 (181)
T ss_pred HHHHH
Confidence 44443
No 15
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=77.46 E-value=1.2e+02 Score=33.63 Aligned_cols=10 Identities=30% Similarity=0.398 Sum_probs=4.0
Q ss_pred CchhHHHHHh
Q 011054 368 GLGSYVEALV 377 (494)
Q Consensus 368 GL~~yVEaL~ 377 (494)
|...+|..|.
T Consensus 599 ~~~~~~~dl~ 608 (1179)
T TIGR02168 599 GFLGVAKDLV 608 (1179)
T ss_pred chhHHHHHHh
Confidence 3333444443
No 16
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=76.90 E-value=49 Score=33.59 Aligned_cols=91 Identities=29% Similarity=0.432 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhhHHH---HHHHHHHHHhHH---HHH----HHHHHHHHHHHH
Q 011054 131 VEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDA---KKLVDEERAFAR---AEI----ESARAAVQRVEE 200 (494)
Q Consensus 131 veeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDA---kkiV~eeRa~A~---aEI----E~ArAaV~Rve~ 200 (494)
+.++=.-|+.|-.+|++.+-+|.+.+.|+.++-.-+..-+++| ++++.++...+. .|| +.|.+.+..++-
T Consensus 10 L~et~~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~i~~~~~~a~~~~~~~~~ee~~~~~~~~ei~~~~~~a~~~L~~a~P 89 (344)
T PF12777_consen 10 LKETEEQVEEMQEELEEKQPELEEKQKEAEELLEEIEKEQEEAEKKKAIVEEEEEEAEKQAKEIEEIKEEAEEELAEAEP 89 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788999999999999999998888888877765433332 334444333221 122 345666777788
Q ss_pred HHHHHHHhhhhcCcccHHHHH
Q 011054 201 SLQEHEQMSRASGKQDFEELM 221 (494)
Q Consensus 201 al~Eqe~~s~~s~kqd~e~L~ 221 (494)
+|++-....+.-.+.|+.+|+
T Consensus 90 ~L~~A~~al~~l~k~di~Eik 110 (344)
T PF12777_consen 90 ALEEAQEALKSLDKSDISEIK 110 (344)
T ss_dssp HHHHHHHHHHCS-HHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHH
Confidence 888888888888888887754
No 17
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=76.17 E-value=91 Score=36.90 Aligned_cols=74 Identities=23% Similarity=0.323 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 011054 131 VEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQE 204 (494)
Q Consensus 131 veeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eeRa~A~aEIE~ArAaV~Rve~al~E 204 (494)
++++-..+.-...++.|.+..+.+-+.+-..+-.-++++-+.++.-++++-..+..++.....-.....+.+++
T Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~e~~~~~~~~~~ 710 (1201)
T PF12128_consen 637 IEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQIEEQLNELEEELKQLKQELEELLEELKE 710 (1201)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444445555555555444444444444455555555555544444444444444444444444433
No 18
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=75.76 E-value=62 Score=29.30 Aligned_cols=87 Identities=33% Similarity=0.407 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-------HH
Q 011054 134 AIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQE-------HE 206 (494)
Q Consensus 134 aismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eeRa~A~aEIE~ArAaV~Rve~al~E-------qe 206 (494)
++++||-|.-++-++|+|+.+=|.++..|..-=+.|++.-=++ ..+.|..++.+.++...-.+ ++
T Consensus 14 ~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l--------~~~~e~~~~~~~~~~~L~~el~~l~~ry~ 85 (120)
T PF12325_consen 14 SVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKL--------MEENEELRALKKEVEELEQELEELQQRYQ 85 (120)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999887666666554443 33444444444444333222 22
Q ss_pred HhhhhcCc--ccHHHHHHHHHHHH
Q 011054 207 QMSRASGK--QDFEELMKEVQEAR 228 (494)
Q Consensus 207 ~~s~~s~k--qd~e~L~~EvqEAR 228 (494)
...+--|. +++|+|+-.|++-+
T Consensus 86 t~LellGEK~E~veEL~~Dv~DlK 109 (120)
T PF12325_consen 86 TLLELLGEKSEEVEELRADVQDLK 109 (120)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHH
Confidence 23333332 37788877776644
No 19
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=75.29 E-value=49 Score=36.73 Aligned_cols=243 Identities=26% Similarity=0.341 Sum_probs=81.1
Q ss_pred HhhhcchHHHH-----HHHHHHHHHhhcccCCCChh--------hHHHHHHHHHH----HHHhhhhhhhhhHHHHHHHHH
Q 011054 99 EAASLEKHVLL-----KKLRDALESLRGRVAGRNKD--------DVEEAIAMVEA----LAVQLTQREGELIQEKAEVKK 161 (494)
Q Consensus 99 eva~Ler~vLL-----KkLr~~LesLrGRvaGrnKd--------dveeaismVea----LavqltqrE~ELiQeK~EVkK 161 (494)
.+.-|||..+| .-||..|++.-.=.+.-+.+ .+++-+.+++. +..++.+-+.++-..|.-...
T Consensus 400 ~~~RLerq~~L~~kE~d~LR~~L~syd~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ele~~l~~l~~~l~~~k~~~~~ 479 (722)
T PF05557_consen 400 LIRRLERQKALATKERDYLRAQLKSYDKEETTMNPSEQDTQRIKEIEDLEQLVDEYKAELEAQLEELEEELSEQKQRNET 479 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 45667887765 35777777765544443333 13333444443 222444445555444432222
Q ss_pred HHH---HHHHhhHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh---------------------------
Q 011054 162 LAD---FLKKASEDAKK---LVDEERAFARAEIESARAAVQRVEESLQEHEQM--------------------------- 208 (494)
Q Consensus 162 lA~---~lKqASeDAkk---iV~eeRa~A~aEIE~ArAaV~Rve~al~Eqe~~--------------------------- 208 (494)
+.. .+++...++.. ...++-...+.+|+..+....++++-+..-+.-
T Consensus 480 ~~~e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~ 559 (722)
T PF05557_consen 480 LEAELKSLKEQLSSNDRSLSSLSEELNELQKEIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSK 559 (722)
T ss_dssp --------------HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHH
T ss_pred hhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHH
Confidence 222 23333333322 122222224455555555554444444332210
Q ss_pred hhhcCcccHHHHHHHHHHHH-hhhhcc----CCccc-----cc-cHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhccc
Q 011054 209 SRASGKQDFEELMKEVQEAR-RIKMLH----QPSKV-----MD-MEHELRALRIQLAEKSKCSLLLRKELAMSKRIEEKL 277 (494)
Q Consensus 209 s~~s~kqd~e~L~~EvqEAR-RIKmLH----~PSKv-----MD-mE~El~~LR~ql~eKs~~~v~L~KEL~~~kr~~en~ 277 (494)
.....++.++.|++|.++-| |++-|. .|..+ |+ ++.|+..|+.++..+-...-+| ||+=..|..+ -.
T Consensus 560 ~~~~k~~~l~~L~~En~~L~~~l~~le~~~~~~~~~~p~~~~~~~~~e~~~l~~~~~~~ekr~~RL-kevf~~ks~e-Fr 637 (722)
T PF05557_consen 560 AEQIKKSTLEALQAENEDLLARLRSLEEGNSQPVDAVPTSSLESQEKEIAELKAELASAEKRNQRL-KEVFKAKSQE-FR 637 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTT----------------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-HH
Confidence 01224568999999988876 454443 34332 33 5789999999999887666665 4443333222 11
Q ss_pred CCceeeccccccCceeEEeeCCCCCCCCCCceeeEEEeccCCCccccccccccccccCCCCcccceeeeeeecCCcEEEE
Q 011054 278 SDSYELDGSEALGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELISGATKSVYAPEPFDVGRILQAEITYNGQQITL 357 (494)
Q Consensus 278 ~~~yeL~G~e~LGS~L~i~~~~d~~~dlSkcsiQW~Rv~~~gsk~e~IsGAtk~~YAPEP~DVGr~LqadI~~~g~k~~~ 357 (494)
-..|.| ||--+-+.|.+ =|||. |+|||.|-| +|-.|...++.- +
T Consensus 638 ~av~~l-----lGyki~~~~~~------------~~rl~--------------S~ya~~~~~---~l~f~~~~~~~~--~ 681 (722)
T PF05557_consen 638 EAVYSL-----LGYKIDFMPNG------------RVRLT--------------SMYAESPDD---YLIFDLESGTGS--M 681 (722)
T ss_dssp HHHHHH-----HSEEEEEETTT------------EEEEE--------------ETT-SSTT-----EEEEEE-------E
T ss_pred HHHHHH-----hcceeeecCCC------------eEEEE--------------ecccCCCCC---eEEEeecCCCcc--c
Confidence 133444 44444443331 25665 589999987 677776643321 2
Q ss_pred eecC-CCCCCCCchhHHHHHhhcCC
Q 011054 358 TTTG-AVDPAPGLGSYVEALVRKHD 381 (494)
Q Consensus 358 ~T~G-PidpaaGL~~yVEaL~rk~~ 381 (494)
.-.| |. ++-+.+-|+.-|+..+
T Consensus 682 ~~~~~~~--~~~~~~~i~~~v~~~~ 704 (722)
T PF05557_consen 682 KLLESEF--SPELEDLIEFWVEERN 704 (722)
T ss_dssp EEE--CC--HHCTHHHHHHHTTTS-
T ss_pred eeCCCch--HHHHHHHHHHHHHcCC
Confidence 2222 22 3456777776665543
No 20
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=73.62 E-value=63 Score=28.38 Aligned_cols=48 Identities=17% Similarity=0.165 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHHhhhhhhhhhHHHH
Q 011054 105 KHVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEK 156 (494)
Q Consensus 105 r~vLLKkLr~~LesLrGRvaGrnKddveeaismVeaLavqltqrE~ELiQeK 156 (494)
..+|.+.++.+|+.=+.++.+ ++++|=..-+-..-.+.+-+..|.+-+
T Consensus 13 ~~~~~~pi~~~l~~R~~~I~~----~l~~A~~~~~ea~~~~~e~~~~l~~A~ 60 (147)
T TIGR01144 13 MKYVWPPLAKAIETRQKKIAD----GLASAERAKKEAALAQKKAQVILKEAK 60 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888988887776654 344444443333333333333333333
No 21
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=72.90 E-value=1.2e+02 Score=33.62 Aligned_cols=98 Identities=23% Similarity=0.272 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHH
Q 011054 109 LKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEI 188 (494)
Q Consensus 109 LKkLr~~LesLrGRvaGrnKddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eeRa~A~aEI 188 (494)
+|..+.-.....-.+. ||+++++--.=|+++--.=-..-.++.|-|.|+++|-+.+++. .+.|
T Consensus 173 ~k~~~~~w~~~~~~Lp--~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~---------------~~~i 235 (555)
T TIGR03545 173 LKAMQQKWKKRKKDLP--NKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKAD---------------KQKI 235 (555)
T ss_pred HHHHHHHHHHHHHhcC--CchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHH---------------HHHH
Confidence 3444444444444455 5778877777777765533344456677777777776666442 2334
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCcccHHHHHHH
Q 011054 189 ESARAAVQRVEESLQEHEQMSRASGKQDFEELMKE 223 (494)
Q Consensus 189 E~ArAaV~Rve~al~Eqe~~s~~s~kqd~e~L~~E 223 (494)
++++..++.-.+.++.+-....+..++|+..|++-
T Consensus 236 ~~~~~~l~~~~~~~~~~~~~lk~ap~~D~~~L~~~ 270 (555)
T TIGR03545 236 KSAKNDLQNDKKQLKADLAELKKAPQNDLKRLENK 270 (555)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhccHhHHHHHHHH
Confidence 44444444444444444444455556677777654
No 22
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=72.09 E-value=1.7e+02 Score=32.80 Aligned_cols=20 Identities=20% Similarity=0.147 Sum_probs=8.8
Q ss_pred CCchhHHHHHhhcCCceeeEEE
Q 011054 367 PGLGSYVEALVRKHDVEFHVVV 388 (494)
Q Consensus 367 aGL~~yVEaL~rk~~tEFNVvi 388 (494)
++...=||+.+. +.-|||||
T Consensus 535 ~~y~~Aie~~lg--~~l~~ivv 554 (1164)
T TIGR02169 535 ERYATAIEVAAG--NRLNNVVV 554 (1164)
T ss_pred HHHHHHHHHHhh--hhhCCEEE
Confidence 344444555442 22445544
No 23
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=71.68 E-value=68 Score=27.94 Aligned_cols=51 Identities=14% Similarity=0.131 Sum_probs=28.8
Q ss_pred chHHHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 011054 104 EKHVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAE 158 (494)
Q Consensus 104 er~vLLKkLr~~LesLrGRvaGrnKddveeaismVeaLavqltqrE~ELiQeK~E 158 (494)
=+++|.+.|.+.|+.=+.++. +++++|-..-+-....+.+-|..|-+-+.|
T Consensus 22 l~~~l~~pi~~~l~~R~~~I~----~~l~~Ae~~~~ea~~~~~~~e~~L~~a~~e 72 (140)
T PRK07353 22 LNALFYKPVGKVVEEREDYIR----TNRAEAKERLAEAEKLEAQYEQQLASARKQ 72 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888887666654 345555554444444444444444443333
No 24
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=70.34 E-value=47 Score=32.76 Aligned_cols=28 Identities=21% Similarity=0.217 Sum_probs=15.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 011054 179 EERAFARAEIESARAAVQRVEESLQEHE 206 (494)
Q Consensus 179 eeRa~A~aEIE~ArAaV~Rve~al~Eqe 206 (494)
.+...++++++.+++.+..++..+....
T Consensus 210 ~~l~~~~~~l~~~~~~l~~~~~~~~~~~ 237 (423)
T TIGR01843 210 GELGRLEAELEVLKRQIDELQLERQQIE 237 (423)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666555554443
No 25
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=69.82 E-value=1.9e+02 Score=32.41 Aligned_cols=62 Identities=37% Similarity=0.518 Sum_probs=40.5
Q ss_pred HhHHHhhhChhHHHhhhHHHHhHHhhhcchHHHHHHHHHHHHHhhcccCCC---------ChhhHHHHHHHHHH
Q 011054 76 DLANKFEKGLAAAAKLSEEAKLREAASLEKHVLLKKLRDALESLRGRVAGR---------NKDDVEEAIAMVEA 140 (494)
Q Consensus 76 dLA~KFekgl~~AakLs~EaK~reva~Ler~vLLKkLr~~LesLrGRvaGr---------nKddveeaismVea 140 (494)
-|+..||.-+++|.++-+|.. ++.+.+|.. ++||++-++.|+.++.-. +.++....|+=+||
T Consensus 85 ~ik~~ye~El~~ar~~l~e~~-~~ra~~e~e--i~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leA 155 (546)
T KOG0977|consen 85 GIKAKYEAELATARKLLDETA-RERAKLEIE--ITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEA 155 (546)
T ss_pred chhHHhhhhHHHHHHHHHHHH-HHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhh
Confidence 478899999999999999942 344555544 467777777766655432 34445555555554
No 26
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=68.60 E-value=98 Score=32.95 Aligned_cols=27 Identities=15% Similarity=0.249 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHHhhcccCCCChhhHHHHHHHHH
Q 011054 105 KHVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVE 139 (494)
Q Consensus 105 r~vLLKkLr~~LesLrGRvaGrnKddveeaismVe 139 (494)
..++.|.+..+|+.=+ +.|.+.|.-.|
T Consensus 19 ~kfl~~Pi~~~l~~R~--------~~I~~~L~eAe 45 (445)
T PRK13428 19 WRFVVPPVRRLMAARQ--------DTVRQQLAESA 45 (445)
T ss_pred HHHHHHHHHHHHHHHH--------HHHHHHHHHHH
Confidence 3456666777776533 44455554444
No 27
>TIGR01147 V_ATP_synt_G vacuolar ATP synthase, subunit G. This model describes the vacuolar ATP synthase G subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. V-ATPases are multi-subunit enzymes composed of two functional domains: A transmembrane Vo domain and a peripheral catalytic domain V1. The G subunit is one of the subunits of the catalytic domain. V-ATPases are responsible for the acidification of endosomes and lysosomes, which are part of the central vacuolar system.
Probab=68.56 E-value=92 Score=28.17 Aligned_cols=78 Identities=19% Similarity=0.214 Sum_probs=50.6
Q ss_pred HhhHHHHHHHHHHH-----------HhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccHHHHHHHHHHHHhhhhccCC
Q 011054 168 KASEDAKKLVDEER-----------AFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQP 236 (494)
Q Consensus 168 qASeDAkkiV~eeR-----------a~A~aEIE~ArAaV~Rve~al~Eqe~~s~~s~kqd~e~L~~EvqEARRIKmLH~P 236 (494)
.|-.+|.+||.+.| ..|..||+.=|+- -++-|+..+.....+.....++|.+|.++
T Consensus 13 ~AE~eA~~IV~~AR~~r~~RLKqAK~EA~~EI~~yr~~---kE~ef~~~ea~~~g~~~~~~~~l~~et~~---------- 79 (113)
T TIGR01147 13 QAEKRAAEKVSEARKRKTKRLKQAKEEAQKEVEKYKQQ---REKEFKEFEAKHLGGNGAAEEKAEAETQA---------- 79 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHcCCcchHHHHHHHHHHH----------
Confidence 47777777777665 4566677766652 34445554444333444456777777654
Q ss_pred ccccccHHHHHHHHHHHHHHhHHHHHHHHH
Q 011054 237 SKVMDMEHELRALRIQLAEKSKCSLLLRKE 266 (494)
Q Consensus 237 SKvMDmE~El~~LR~ql~eKs~~~v~L~KE 266 (494)
+|..|...++.+...+|.+.=.
T Consensus 80 --------ki~~ik~~~~~~~~~Vv~~Ll~ 101 (113)
T TIGR01147 80 --------KIREIKKAVQKNKDAVIKDLLH 101 (113)
T ss_pred --------HHHHHHHHHHHhHHHHHHHHHH
Confidence 6888888888888888776543
No 28
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=67.85 E-value=3.5e+02 Score=34.68 Aligned_cols=150 Identities=25% Similarity=0.288 Sum_probs=100.2
Q ss_pred HHHHHhhcccCCC---ChhhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHH---------------
Q 011054 114 DALESLRGRVAGR---NKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKK--------------- 175 (494)
Q Consensus 114 ~~LesLrGRvaGr---nKddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkk--------------- 175 (494)
+.||..+.|+-|- .--|++..-+.++.|..++-+-+.-|.+.|....+++.-+.+|..+++.
T Consensus 1403 ~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~ 1482 (1930)
T KOG0161|consen 1403 ASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEEL 1482 (1930)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3455555554432 2346777888899999999999999999998888888888776655432
Q ss_pred -----HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcc--cHHHHHHHHHHHHhhhhccCCccccccHHHHHH
Q 011054 176 -----LVDEERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQ--DFEELMKEVQEARRIKMLHQPSKVMDMEHELRA 248 (494)
Q Consensus 176 -----iV~eeRa~A~aEIE~ArAaV~Rve~al~Eqe~~s~~s~kq--d~e~L~~EvqEARRIKmLH~PSKvMDmE~El~~ 248 (494)
-++.+...+..||+.+--.+.-.+..++|-++.....+.+ |+..--+|...+.+ |+-++.+-.+-+..+
T Consensus 1483 ~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le----~eE~~~lr~~~~~~~ 1558 (1930)
T KOG0161|consen 1483 LEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAALE----AEEDKKLRLQLELQQ 1558 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhhhHHHHHHHHHHH
Confidence 2345667788889888888988999998888887776653 33333334444322 445555555566666
Q ss_pred HHHH----HHHHhHHHHHHHHHH
Q 011054 249 LRIQ----LAEKSKCSLLLRKEL 267 (494)
Q Consensus 249 LR~q----l~eKs~~~v~L~KEL 267 (494)
+|.+ |++|-.++..++|.+
T Consensus 1559 ~r~e~er~l~ek~Ee~E~~rk~~ 1581 (1930)
T KOG0161|consen 1559 LRSEIERRLQEKDEEIEELRKNL 1581 (1930)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHH
Confidence 6665 455555555555554
No 29
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=67.54 E-value=97 Score=28.07 Aligned_cols=20 Identities=20% Similarity=0.301 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHhhcccC
Q 011054 105 KHVLLKKLRDALESLRGRVA 124 (494)
Q Consensus 105 r~vLLKkLr~~LesLrGRva 124 (494)
+..|.+.+..+|+.=+.++.
T Consensus 40 ~k~l~~Pi~~~l~~R~~~I~ 59 (156)
T CHL00118 40 NIILYKPLLKVLDERKEYIR 59 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56777788888877655553
No 30
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=67.43 E-value=1.1e+02 Score=28.83 Aligned_cols=43 Identities=23% Similarity=0.452 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccHHHHHHHHHHHH
Q 011054 185 RAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEAR 228 (494)
Q Consensus 185 ~aEIE~ArAaV~Rve~al~Eqe~~s~~s~kqd~e~L~~EvqEAR 228 (494)
..+++..+.-+.++...++...+.-... ++.++++++.++..|
T Consensus 62 ~~~~~~~~~r~~~l~~~i~~~~~~i~~~-r~~l~~~~~~l~~~~ 104 (302)
T PF10186_consen 62 KREIEELRERLERLRERIERLRKRIEQK-RERLEELRESLEQRR 104 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 3444444444444444444433332222 234445554444443
No 31
>PF14443 DBC1: DBC1
Probab=66.12 E-value=2.2 Score=39.23 Aligned_cols=15 Identities=53% Similarity=1.265 Sum_probs=12.6
Q ss_pred CCCCCCCceeeEEEec
Q 011054 301 NGPELSKCSIQWYRVP 316 (494)
Q Consensus 301 ~~~dlSkcsiQW~Rv~ 316 (494)
..+|||+|+ ||||+.
T Consensus 54 tgiDLS~Ct-~W~rf~ 68 (126)
T PF14443_consen 54 TGIDLSNCT-QWYRFA 68 (126)
T ss_pred hccchhhcC-ccceee
Confidence 358999998 999975
No 32
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=65.98 E-value=76 Score=29.14 Aligned_cols=48 Identities=21% Similarity=0.207 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHHhhhhhhhhhHHHH
Q 011054 105 KHVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEK 156 (494)
Q Consensus 105 r~vLLKkLr~~LesLrGRvaGrnKddveeaismVeaLavqltqrE~ELiQeK 156 (494)
..++.|.+.++|+.=+-++.+ ++++|-..-+-..-.+.+-|..|.+-+
T Consensus 34 ~~~~~kpi~~~l~~R~~~I~~----~l~~Ae~~~~eA~~~~~e~e~~l~~a~ 81 (173)
T PRK13460 34 KKFAWDVILKALDERASGVQN----DINKASELRLEAEALLKDYEARLNSAK 81 (173)
T ss_pred HHHhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888876666543 444444443333333444444443333
No 33
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=65.93 E-value=1.3e+02 Score=28.98 Aligned_cols=19 Identities=11% Similarity=0.120 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHHhhccc
Q 011054 105 KHVLLKKLRDALESLRGRV 123 (494)
Q Consensus 105 r~vLLKkLr~~LesLrGRv 123 (494)
..+|-|.+++.|+.=+-.+
T Consensus 66 ~k~l~kPi~~~L~~R~~~I 84 (205)
T PRK06231 66 IFLFWKPTQRFLNKRKELI 84 (205)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556677777777655444
No 34
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=65.03 E-value=2.3e+02 Score=31.57 Aligned_cols=27 Identities=22% Similarity=0.219 Sum_probs=16.3
Q ss_pred cHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 011054 242 MEHELRALRIQLAEKSKCSLLLRKELA 268 (494)
Q Consensus 242 mE~El~~LR~ql~eKs~~~v~L~KEL~ 268 (494)
++.++..|..++.........+++++.
T Consensus 864 ~~~~~~~l~~~~~~~~~~~~~l~~~~~ 890 (1179)
T TIGR02168 864 LEELIEELESELEALLNERASLEEALA 890 (1179)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666666665555666666665
No 35
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=64.57 E-value=88 Score=26.50 Aligned_cols=32 Identities=22% Similarity=0.432 Sum_probs=21.8
Q ss_pred HHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 011054 166 LKKASEDAKKLVDEERAFARAEIESARAAVQR 197 (494)
Q Consensus 166 lKqASeDAkkiV~eeRa~A~aEIE~ArAaV~R 197 (494)
|.+|-.+|+.||++.|.....=+..|+.-...
T Consensus 9 Ll~AE~eA~~iV~~Ar~~r~~~lk~Ak~eA~~ 40 (105)
T PF03179_consen 9 LLEAEKEAQEIVEEARKEREQRLKQAKEEAEK 40 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777766666666665554
No 36
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=64.54 E-value=1.8e+02 Score=30.66 Aligned_cols=128 Identities=30% Similarity=0.390 Sum_probs=89.4
Q ss_pred hhhHHHHHHH-HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 011054 128 KDDVEEAIAM-VEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHE 206 (494)
Q Consensus 128 Kddveeaism-VeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eeRa~A~aEIE~ArAaV~Rve~al~Eqe 206 (494)
-||+..+|-+ -|+|.--..|-=|+|--=|+|-+.|-+=|..= .+-|.--.+||||-|. |+-.|+.+|+
T Consensus 40 n~~Lqk~lKLneE~ltkTi~qy~~QLn~L~aENt~L~SkLe~E--------Kq~kerLEtEiES~rs---RLaaAi~d~d 108 (305)
T PF14915_consen 40 NDDLQKSLKLNEETLTKTIFQYNGQLNVLKAENTMLNSKLEKE--------KQNKERLETEIESYRS---RLAAAIQDHD 108 (305)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHh--------HHHHHHHHHHHHHHHH---HHHHHHhhHH
Confidence 3677888887 46788888888888888888888888766432 2334445689999886 7788888888
Q ss_pred HhhhhcCcccHHH-HHHHHHHHH---------------hhhhccCC-----ccccccHHHHHHHHHHHHHHhHHHHHHHH
Q 011054 207 QMSRASGKQDFEE-LMKEVQEAR---------------RIKMLHQP-----SKVMDMEHELRALRIQLAEKSKCSLLLRK 265 (494)
Q Consensus 207 ~~s~~s~kqd~e~-L~~EvqEAR---------------RIKmLH~P-----SKvMDmE~El~~LR~ql~eKs~~~v~L~K 265 (494)
++- .| +.|++- +..+..|-= ...+|+|+ ||+=.+|.|++-.|+.|.||+...-.+++
T Consensus 109 qsq-~s-krdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~Qr 186 (305)
T PF14915_consen 109 QSQ-TS-KRDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQR 186 (305)
T ss_pred HHH-hh-HHHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 742 22 223331 111111111 13567665 67888999999999999999998888888
Q ss_pred HHH
Q 011054 266 ELA 268 (494)
Q Consensus 266 EL~ 268 (494)
+|.
T Consensus 187 dL~ 189 (305)
T PF14915_consen 187 DLS 189 (305)
T ss_pred HHH
Confidence 775
No 37
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=62.76 E-value=1.2e+02 Score=29.54 Aligned_cols=145 Identities=21% Similarity=0.315 Sum_probs=64.1
Q ss_pred HHHHHHHHHhhcccCC-------CChhhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 011054 110 KKLRDALESLRGRVAG-------RNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERA 182 (494)
Q Consensus 110 KkLr~~LesLrGRvaG-------rnKddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eeRa 182 (494)
++|..-|..++++... ....++.++-..|+.+..+-++-+.++-.-+.++..+=.-+... -..++-++.+=.
T Consensus 28 ~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e-~~~~~~le~el~ 106 (312)
T PF00038_consen 28 KRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEE-LAERKDLEEELE 106 (312)
T ss_dssp HHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHh
Confidence 4566666667666422 23345555556777777666666655554444444332222211 122233333334
Q ss_pred hHHHHHHHHHHHHHHHH---HHHHHHHHhhhhcCcccHHHHHHHHHHHHhhhhccCCccccccHHHHHHHHHHHHHHh
Q 011054 183 FARAEIESARAAVQRVE---ESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQPSKVMDMEHELRALRIQLAEKS 257 (494)
Q Consensus 183 ~A~aEIE~ArAaV~Rve---~al~Eqe~~s~~s~kqd~e~L~~EvqEARRIKmLH~PSKvMDmE~El~~LR~ql~eKs 257 (494)
..+.+++.+..+-...+ +.|++.=.+......+++.+|+..++...=+.+=+ ..-.||..-|+.+|.++....
T Consensus 107 ~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~~--~~~~dL~~~L~eiR~~ye~~~ 182 (312)
T PF00038_consen 107 SLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQIQSSVTVEVDQ--FRSSDLSAALREIRAQYEEIA 182 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT------------------HHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccceeecc--cccccchhhhhhHHHHHHHHH
Confidence 44444444444433332 34445445555566667777777665211122111 123467788888887775443
No 38
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=61.57 E-value=1.1e+02 Score=30.62 Aligned_cols=85 Identities=16% Similarity=0.276 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-----HHHHHHh--hhhc-CcccHHHHHHHHHHHHhhhhcc-CCcccc
Q 011054 170 SEDAKKLVDEERAFARAEIESARAAVQRVEES-----LQEHEQM--SRAS-GKQDFEELMKEVQEARRIKMLH-QPSKVM 240 (494)
Q Consensus 170 SeDAkkiV~eeRa~A~aEIE~ArAaV~Rve~a-----l~Eqe~~--s~~s-~kqd~e~L~~EvqEARRIKmLH-~PSKvM 240 (494)
..+|...++++=..++.+++.|+.+++..+.. .+++... ...+ -..++.++.-+..+.|.. +-- +| .|.
T Consensus 168 ~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~-~~~~~P-~v~ 245 (362)
T TIGR01010 168 RKDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSI-TPEQNP-QVP 245 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCCC-chH
Confidence 35565666666666666666666655554431 1111110 0000 011444445555555432 222 33 577
Q ss_pred ccHHHHHHHHHHHHHH
Q 011054 241 DMEHELRALRIQLAEK 256 (494)
Q Consensus 241 DmE~El~~LR~ql~eK 256 (494)
..+.+|.+|+.||.+-
T Consensus 246 ~l~~~i~~l~~~i~~e 261 (362)
T TIGR01010 246 SLQARIKSLRKQIDEQ 261 (362)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8889999999998763
No 39
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=61.56 E-value=4.6e+02 Score=33.77 Aligned_cols=140 Identities=25% Similarity=0.353 Sum_probs=77.7
Q ss_pred HHHHHHHHhhcccCCCC---hhhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHH----------H
Q 011054 111 KLRDALESLRGRVAGRN---KDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKL----------V 177 (494)
Q Consensus 111 kLr~~LesLrGRvaGrn---KddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkki----------V 177 (494)
+.|--+|..+-.+.|.. .+.+++.=..++-|..||..+|.||-|-..++...-..+.++..-.+.+ .
T Consensus 1034 ~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~l 1113 (1930)
T KOG0161|consen 1034 RIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEEL 1113 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443333333333 4566667778999999999999999988887776655544443333222 2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh--hhcCcccHHH-HHHHHHHHHhhhhccCCccccccHHHHHHHHHHHH
Q 011054 178 DEERAFARAEIESARAAVQRVEESLQEHEQMS--RASGKQDFEE-LMKEVQEARRIKMLHQPSKVMDMEHELRALRIQLA 254 (494)
Q Consensus 178 ~eeRa~A~aEIE~ArAaV~Rve~al~Eqe~~s--~~s~kqd~e~-L~~EvqEARRIKmLH~PSKvMDmE~El~~LR~ql~ 254 (494)
+.|| +++++.|.+|+...+-=++|++.-... ....++++.. .-.|+++.||.- --..|+.|..+..||+..+
T Consensus 1114 e~er-~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~l----eee~~~~e~~~~~lr~~~~ 1188 (1930)
T KOG0161|consen 1114 EAER-ASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDL----EEETLDHEAQIEELRKKHA 1188 (1930)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHhHHHHHHHHHHHHH
Confidence 2333 466777777766655444444332221 1111112221 223555555542 1356778888888886544
Q ss_pred H
Q 011054 255 E 255 (494)
Q Consensus 255 e 255 (494)
.
T Consensus 1189 ~ 1189 (1930)
T KOG0161|consen 1189 D 1189 (1930)
T ss_pred H
Confidence 3
No 40
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=61.55 E-value=31 Score=37.94 Aligned_cols=88 Identities=22% Similarity=0.310 Sum_probs=43.4
Q ss_pred eeEEEeccCCC-ccccccccccccccCCCCcccceeeeee---ecC----Cc--EEEEeecCCCCC----CCCchhHHHH
Q 011054 310 IQWYRVPSEGG-KRELISGATKSVYAPEPFDVGRILQAEI---TYN----GQ--QITLTTTGAVDP----APGLGSYVEA 375 (494)
Q Consensus 310 iQW~Rv~~~gs-k~e~IsGAtk~~YAPEP~DVGr~LqadI---~~~----g~--k~~~~T~GPidp----aaGL~~yVEa 375 (494)
=.||+...+.. -.-+|=-+.-|.-+|.+ |.|. +-+.| +++ |+ .+.+.-+|| .. .-|.-+++++
T Consensus 326 G~~i~F~~~~~~P~~lIk~~~vs~~~~~~-~~~~-~~~~~~niT~~~~~~g~P~~~~l~~~~~-~~~~~~~~g~~~~~~~ 402 (555)
T TIGR03545 326 GEDYDFKDDNPYPDFLIKKADVSGKMPDG-DVGE-IKGEVSNITNDHDLLGKPTTINLSAEAS-GKGKLTVKGVLDLRQP 402 (555)
T ss_pred CceEEccCCCCCCcEEEEeeeEeeeecCC-Ccce-EEEEEEecCCChhhhCCCeEEEEecCCC-CcceEEEeeEEecccC
Confidence 45776665543 23344444444555555 5544 33332 222 22 233333443 22 2244444432
Q ss_pred HhhcCCceeeEEEEeecCCCCCCCc
Q 011054 376 LVRKHDVEFHVVVTQMNGVDHPSES 400 (494)
Q Consensus 376 L~rk~~tEFNVvi~Q~NG~d~~s~s 400 (494)
=--+.+..|++-=.++++..+++.+
T Consensus 403 g~~~~~~~~~~~~~~~~~~~l~~~~ 427 (555)
T TIGR03545 403 GEQKADLDFNVPNLDITDIELLQSK 427 (555)
T ss_pred CCccceeEEEEcCcccccccccCcc
Confidence 2224457788888888888887643
No 41
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=61.32 E-value=3.3e+02 Score=32.69 Aligned_cols=30 Identities=17% Similarity=0.214 Sum_probs=14.4
Q ss_pred HHHHHHHHhhcccCCCChhhHHHHHHHHHH
Q 011054 111 KLRDALESLRGRVAGRNKDDVEEAIAMVEA 140 (494)
Q Consensus 111 kLr~~LesLrGRvaGrnKddveeaismVea 140 (494)
.|.+....+.+.-..++.+++++-|.-++.
T Consensus 807 qie~l~~~l~~~~~~~s~~ele~ei~~~~~ 836 (1311)
T TIGR00606 807 KIAQQAAKLQGSDLDRTVQQVNQEKQEKQH 836 (1311)
T ss_pred HHHHHHHHhccccccCCHHHHHHHHHHHHH
Confidence 333333333333333556666666655443
No 42
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=61.19 E-value=3.1e+02 Score=31.74 Aligned_cols=130 Identities=29% Similarity=0.346 Sum_probs=77.0
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH--------HHHhhhhc
Q 011054 141 LAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQE--------HEQMSRAS 212 (494)
Q Consensus 141 LavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eeRa~A~aEIE~ArAaV~Rve~al~E--------qe~~s~~s 212 (494)
|-..|.|-..++---++|.-.|.+....-.+| ...++-+|..-+.||-.++.-=+|+=+=+-| |.+.|.-.
T Consensus 39 l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~-~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk 117 (717)
T PF09730_consen 39 LENELKQLRQELSNVQAENERLSQLNQELRKE-CEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLK 117 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 33344444444555556666666665555554 4678899999999999998887777543322 33444444
Q ss_pred Ccc-cHHHHHHHHHHHHhhhhccCCccccccHHHHHHHHHHHHHHhH---------------------HHHHHHHHHHHh
Q 011054 213 GKQ-DFEELMKEVQEARRIKMLHQPSKVMDMEHELRALRIQLAEKSK---------------------CSLLLRKELAMS 270 (494)
Q Consensus 213 ~kq-d~e~L~~EvqEARRIKmLH~PSKvMDmE~El~~LR~ql~eKs~---------------------~~v~L~KEL~~~ 270 (494)
..| +.|+|+-||.- ++.|+.-|+.|+.|-.. .-..|+|||+-+
T Consensus 118 ~sQvefE~~Khei~r---------------l~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~EReqk~~LrkEL~~~ 182 (717)
T PF09730_consen 118 QSQVEFEGLKHEIKR---------------LEEEIELLNSQLEEAARLKEIAEKQLEEALESLKSEREQKNALRKELDQH 182 (717)
T ss_pred HhHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445 88888877642 45566666666543221 124689999766
Q ss_pred hhhhc---ccCCceeeccc
Q 011054 271 KRIEE---KLSDSYELDGS 286 (494)
Q Consensus 271 kr~~e---n~~~~yeL~G~ 286 (494)
...+. ..+-+|.|+|.
T Consensus 183 ~~~~~~~~~~~~~~~~~~~ 201 (717)
T PF09730_consen 183 LNIESISYLSNLAISLDGL 201 (717)
T ss_pred cCccccccccchhhccccc
Confidence 54442 12244555554
No 43
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=61.06 E-value=1.3e+02 Score=32.33 Aligned_cols=85 Identities=24% Similarity=0.316 Sum_probs=59.2
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccH
Q 011054 139 EALAVQLTQREGELIQEKAEVKKLADF-LKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDF 217 (494)
Q Consensus 139 eaLavqltqrE~ELiQeK~EVkKlA~~-lKqASeDAkkiV~eeRa~A~aEIE~ArAaV~Rve~al~Eqe~~s~~s~kqd~ 217 (494)
+|+.-+.+.+|.+- +...|-..-|+- +-.|--+|.+|+.+..+.+.+.|..|++=+.|+.+.|.|-.+........-.
T Consensus 249 ~Af~~v~~Are~~~-~~i~eAeayan~iip~A~gea~~ii~~AeAyr~~~i~~AeGda~rF~~i~~~Y~kaP~vtr~RlY 327 (419)
T PRK10930 249 AAFDDAIAARENEQ-QYIREAEAYTNEVQPRANGQAQRILEEARAYKAQTILEAQGEVARFAKLLPEYKAAPEITRERLY 327 (419)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCHHHHHHHHH
Confidence 44444455555543 344455555443 4478889999999999999999999999999999999988777776665533
Q ss_pred HHHHHHH
Q 011054 218 EELMKEV 224 (494)
Q Consensus 218 e~L~~Ev 224 (494)
=+-|++|
T Consensus 328 letme~v 334 (419)
T PRK10930 328 IETMEKV 334 (419)
T ss_pred HHHHHHH
Confidence 3344443
No 44
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=59.21 E-value=1.3e+02 Score=27.71 Aligned_cols=70 Identities=17% Similarity=0.276 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhH
Q 011054 105 KHVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFA 184 (494)
Q Consensus 105 r~vLLKkLr~~LesLrGRvaGrnKddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eeRa~A 184 (494)
..++.+.+.++|+.=+.++. +++++|-..-+-....+.+-|.. |.+|-..|..|+++.+..|
T Consensus 36 ~~~l~~pi~~~l~~R~~~I~----~~l~~Ae~~~~eA~~~~~e~e~~--------------l~~a~~ea~~ii~~a~~~a 97 (173)
T PRK13453 36 KKFAWGPLKDVMDKRERDIN----RDIDDAEQAKLNAQKLEEENKQK--------------LKETQEEVQKILEDAKVQA 97 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH
Confidence 45666778888776554442 23333333332222222222222 4445555555555555555
Q ss_pred HHHHHHHH
Q 011054 185 RAEIESAR 192 (494)
Q Consensus 185 ~aEIE~Ar 192 (494)
..+.+...
T Consensus 98 ~~~~~~~~ 105 (173)
T PRK13453 98 RQQQEQII 105 (173)
T ss_pred HHHHHHHH
Confidence 55444443
No 45
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=58.62 E-value=1.5e+02 Score=27.37 Aligned_cols=27 Identities=26% Similarity=0.390 Sum_probs=14.4
Q ss_pred HHHhhHHHHHHHHHHHHhHHHHHHHHH
Q 011054 166 LKKASEDAKKLVDEERAFARAEIESAR 192 (494)
Q Consensus 166 lKqASeDAkkiV~eeRa~A~aEIE~Ar 192 (494)
|.+|...|+.|+++.+..|..+.+..+
T Consensus 88 L~~A~~ea~~Ii~~A~~~a~~~~e~~~ 114 (184)
T PRK13455 88 QREVQEQADRIVAAAKDEAQAAAEQAK 114 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555666555555555444433
No 46
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=58.52 E-value=46 Score=30.83 Aligned_cols=31 Identities=29% Similarity=0.367 Sum_probs=21.0
Q ss_pred hcCcccHHHHHHHHHHHHhhhhccCCccccccHHHHHHHHHHHHHH
Q 011054 211 ASGKQDFEELMKEVQEARRIKMLHQPSKVMDMEHELRALRIQLAEK 256 (494)
Q Consensus 211 ~s~kqd~e~L~~EvqEARRIKmLH~PSKvMDmE~El~~LR~ql~eK 256 (494)
...++|+++|++|+.. -|.|+.+|+.|...-
T Consensus 157 ~~~~~ei~~lk~el~~---------------~~~~~~~LkkQ~~~l 187 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEK---------------KEKEIEALKKQSEGL 187 (192)
T ss_pred hhhHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHH
Confidence 3345577778887777 567777777776543
No 47
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=58.50 E-value=1.6e+02 Score=27.62 Aligned_cols=77 Identities=17% Similarity=0.198 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHH
Q 011054 107 VLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARA 186 (494)
Q Consensus 107 vLLKkLr~~LesLrGRvaGrnKddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eeRa~A~a 186 (494)
.+-|.|...|+.=.-++. +++++|=..=+-++..+.+.|..|-+-+.|-.. .+++|-++|.++.++.+..|+.
T Consensus 24 fawkPI~~~LeeR~~~I~----~~Ld~Ae~~r~eA~~l~~e~e~~L~~Ar~EA~~---Ii~~A~~~a~~~~~ea~~eA~~ 96 (154)
T PRK06568 24 PAKKAILNSLDAKILEVQ----EKVLKAEKLKEDAALLFEQTNAQIKKLETLRSQ---MIEESNEVTKKIIQEKTKEIEE 96 (154)
T ss_pred HhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666665444432 355555444444444444444444433333333 3445555555555555555555
Q ss_pred HHHH
Q 011054 187 EIES 190 (494)
Q Consensus 187 EIE~ 190 (494)
|++.
T Consensus 97 ea~r 100 (154)
T PRK06568 97 FLEH 100 (154)
T ss_pred HHHH
Confidence 4443
No 48
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=57.76 E-value=1.7e+02 Score=30.82 Aligned_cols=77 Identities=25% Similarity=0.330 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH-HHHHhhHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHH
Q 011054 130 DVEEAIAMVEALAVQLTQREGELIQEKAEVKKLAD-FLKKASEDAKKLVDEER--AFARAEIESARAAVQRVEESLQEHE 206 (494)
Q Consensus 130 dveeaismVeaLavqltqrE~ELiQeK~EVkKlA~-~lKqASeDAkkiV~eeR--a~A~aEIE~ArAaV~Rve~al~Eqe 206 (494)
.++.|-+-+.+.-.++-+-+.++.+.++.+.+-.. -|++|..|..|...=.. ...+.|++.|+++++..+..+.-..
T Consensus 92 al~qAea~la~a~~~~~~~~a~~~~~~A~i~~a~a~~l~~a~~~~~R~~~L~~~g~vs~~~~~~a~~a~~~A~A~~~~a~ 171 (352)
T COG1566 92 ALEQAEAALAAAEAQLRNLRAQLASAQALIAQAEAQDLDQAQNELERRAELAQRGVVSREELDRARAALQAAEAALAAAQ 171 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhH
Confidence 34455555555555555555666666666666666 48888888888766553 3347788888887777777664433
No 49
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=57.71 E-value=3.5e+02 Score=32.96 Aligned_cols=168 Identities=17% Similarity=0.170 Sum_probs=0.0
Q ss_pred hHHhhhcchHHHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHH--------hhhhhhhhhHHHHHHHHHHHHHHHH
Q 011054 97 LREAASLEKHVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAV--------QLTQREGELIQEKAEVKKLADFLKK 168 (494)
Q Consensus 97 ~reva~Ler~vLLKkLr~~LesLrGRvaGrnKddveeaismVeaLav--------qltqrE~ELiQeK~EVkKlA~~lKq 168 (494)
+++...=+.+..+..|.+.++.|.- ...+-+++++++..++.+.. .+.++=.+++..+.+...+..-+..
T Consensus 210 l~~~l~~l~~~~i~~l~e~~~~~~~--~~~~le~l~~~~~~l~~i~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (1353)
T TIGR02680 210 LTEALPPLDDDELTDVADALEQLDE--YRDELERLEALERALRNFLQRYRRYARTMLRRRATRLRSAQTQYDQLSRDLGR 287 (1353)
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccHHHHHHHHHHHHhhhhccCCccccccHHHHHH
Q 011054 169 ASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQPSKVMDMEHELRA 248 (494)
Q Consensus 169 ASeDAkkiV~eeRa~A~aEIE~ArAaV~Rve~al~Eqe~~s~~s~kqd~e~L~~EvqEARRIKmLH~PSKvMDmE~El~~ 248 (494)
+..+- .-..++...+..+++....-...+++-+.+-..+.--...+++++++.++.+...-.. ..+.+....+.-++.
T Consensus 288 ~~~~~-~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~~~~a~~~~~eL~el~~ql~~~~~~a~-~~~~~~~~a~~~~e~ 365 (1353)
T TIGR02680 288 ARDEL-ETAREEERELDARTEALEREADALRTRLEALQGSPAYQDAEELERARADAEALQAAAA-DARQAIREAESRLEE 365 (1353)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhHHHHHHHHHHH
Q 011054 249 LRIQLAEKSKCSLLLRKELA 268 (494)
Q Consensus 249 LR~ql~eKs~~~v~L~KEL~ 268 (494)
+|..+.+-....-.+.+++.
T Consensus 366 ~~~~~~~~~~r~~~~~~~l~ 385 (1353)
T TIGR02680 366 ERRRLDEEAGRLDDAERELR 385 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHH
No 50
>PRK00106 hypothetical protein; Provisional
Probab=57.46 E-value=2.7e+02 Score=31.05 Aligned_cols=53 Identities=21% Similarity=0.459 Sum_probs=31.3
Q ss_pred ecCCCCCCCCchhHHHHHhhcCCceeeEEEEeecCCCCC----CCce---EEEEecceeEEeecCc
Q 011054 359 TTGAVDPAPGLGSYVEALVRKHDVEFHVVVTQMNGVDHP----SESI---HVLHVGKMRIKLCKGK 417 (494)
Q Consensus 359 T~GPidpaaGL~~yVEaL~rk~~tEFNVvi~Q~NG~d~~----s~s~---hvl~igk~RikL~KG~ 417 (494)
++|-|+|+ ..|..+.|...||+-.|... |++.. ...+ -+..+|+|+-+-..|.
T Consensus 290 ~dgrIhp~-----rIEe~v~k~~~e~~~~i~~~-Ge~a~~~lg~~~~~~e~~~~lg~l~~r~sy~q 349 (535)
T PRK00106 290 KDGRIHPA-----RIEELVEKNRLEMDNRIREY-GEAAAYEIGAPNLHPDLIKIMGRLQFRTSYGQ 349 (535)
T ss_pred HcCCcCHH-----HHHHHHHHHHHHHHHHHHHH-HHHHHHHcCCCCCCHHHHHHHHHHhhhccCCC
Confidence 35667764 67888888888777655442 22211 1111 1345788888777664
No 51
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=57.09 E-value=1.4e+02 Score=26.42 Aligned_cols=76 Identities=24% Similarity=0.364 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHH
Q 011054 106 HVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFAR 185 (494)
Q Consensus 106 ~vLLKkLr~~LesLrGRvaGrnKddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eeRa~A~ 185 (494)
..+.|.+.+.|+.=+.++. +++++|-..-+.....+.+-|..|.+-+.|... .+..|-.+|.++.++.+..|+
T Consensus 23 ~~~~~pi~~~l~~R~~~I~----~~l~~a~~~~~~a~~~~~e~~~~l~~a~~ea~~---i~~~a~~ea~~~~~~~~~~a~ 95 (156)
T PRK05759 23 KFVWPPIMKALEERQKKIA----DGLAAAERAKKELELAQAKYEAQLAEARAEAAE---IIEQAKKRAAQIIEEAKAEAE 95 (156)
T ss_pred HHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888877665553 355555555555555555555555555554433 334445555555555444444
Q ss_pred HHH
Q 011054 186 AEI 188 (494)
Q Consensus 186 aEI 188 (494)
.|+
T Consensus 96 ~ea 98 (156)
T PRK05759 96 AEA 98 (156)
T ss_pred HHH
Confidence 443
No 52
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=56.59 E-value=1.6e+02 Score=26.78 Aligned_cols=19 Identities=16% Similarity=0.172 Sum_probs=7.4
Q ss_pred hhHHHHHHHHHHHHhHHHH
Q 011054 169 ASEDAKKLVDEERAFARAE 187 (494)
Q Consensus 169 ASeDAkkiV~eeRa~A~aE 187 (494)
|-..|+.++++.+..|..+
T Consensus 86 A~~ea~~ii~~A~~~a~~~ 104 (156)
T CHL00118 86 ARKEAQLEITQSQKEAKEI 104 (156)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333444333333333
No 53
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=56.42 E-value=1.6e+02 Score=26.97 Aligned_cols=31 Identities=19% Similarity=0.213 Sum_probs=18.3
Q ss_pred HHHHhhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 011054 165 FLKKASEDAKKLVDEERAFARAEIESARAAV 195 (494)
Q Consensus 165 ~lKqASeDAkkiV~eeRa~A~aEIE~ArAaV 195 (494)
-|..|...|..|+++.+..|..+.+.+.+..
T Consensus 79 ~L~~a~~ea~~ii~~a~~~a~~~~~~~~~~A 109 (174)
T PRK07352 79 KLAQAQQEAERIRADAKARAEAIRAEIEKQA 109 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666666666655554433
No 54
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=56.20 E-value=1.6e+02 Score=26.70 Aligned_cols=20 Identities=10% Similarity=0.137 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHhhcccC
Q 011054 105 KHVLLKKLRDALESLRGRVA 124 (494)
Q Consensus 105 r~vLLKkLr~~LesLrGRva 124 (494)
++.|.|.+..+|+.=+.++.
T Consensus 26 ~~~l~~pi~~~l~~R~~~I~ 45 (164)
T PRK14471 26 AKFAWKPILGAVKEREDSIK 45 (164)
T ss_pred HHHhHHHHHHHHHHHHHHHH
Confidence 45677788888877655553
No 55
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=54.97 E-value=4.5e+02 Score=31.62 Aligned_cols=100 Identities=13% Similarity=0.205 Sum_probs=51.1
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH-------HHHHHhhHHHHH---HHHHHHHhHHHHHHHHHHHHHH
Q 011054 128 KDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLA-------DFLKKASEDAKK---LVDEERAFARAEIESARAAVQR 197 (494)
Q Consensus 128 KddveeaismVeaLavqltqrE~ELiQeK~EVkKlA-------~~lKqASeDAkk---iV~eeRa~A~aEIE~ArAaV~R 197 (494)
+..+.+++....-|.-+|..-..++.+-..+++++- ..+..+...-.+ --+++-..++.++...+.-+..
T Consensus 873 klkl~~~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 952 (1311)
T TIGR00606 873 KLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKN 952 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666666666666666655555555443 333333333322 2223334445555555555555
Q ss_pred HHHHHHHHHHhhhhcCcccHHHHHHHHHHH
Q 011054 198 VEESLQEHEQMSRASGKQDFEELMKEVQEA 227 (494)
Q Consensus 198 ve~al~Eqe~~s~~s~kqd~e~L~~EvqEA 227 (494)
+..+..+-....+..+.+.++.+..++++.
T Consensus 953 ~~~~~~~i~~y~~~~~~~qL~~~e~el~~~ 982 (1311)
T TIGR00606 953 IHGYMKDIENKIQDGKDDYLKQKETELNTV 982 (1311)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 555555554444444555566666666554
No 56
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=54.63 E-value=82 Score=26.22 Aligned_cols=48 Identities=23% Similarity=0.329 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 011054 159 VKKLADFLKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHE 206 (494)
Q Consensus 159 VkKlA~~lKqASeDAkkiV~eeRa~A~aEIE~ArAaV~Rve~al~Eqe 206 (494)
+..+..+++.+++++...+++-|..+..-++.+|..+......++++.
T Consensus 11 ~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~~~~~~ 58 (94)
T PF05957_consen 11 RADLEDLARSAADLAGEKADEARDRAEEALDDARDRAEDAADQAREQA 58 (94)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888889999999999999999999999888887777666654
No 57
>PRK12704 phosphodiesterase; Provisional
Probab=54.58 E-value=3.3e+02 Score=29.92 Aligned_cols=13 Identities=31% Similarity=0.457 Sum_probs=7.1
Q ss_pred HHHHhhcCCceee
Q 011054 373 VEALVRKHDVEFH 385 (494)
Q Consensus 373 VEaL~rk~~tEFN 385 (494)
.|.++.+-..+|+
T Consensus 284 iee~~~~~~~~~~ 296 (520)
T PRK12704 284 IEEMVEKARKEVD 296 (520)
T ss_pred HHHHHHHHHHHHH
Confidence 4555555555554
No 58
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=53.93 E-value=1.4e+02 Score=30.58 Aligned_cols=85 Identities=19% Similarity=0.307 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhhhhhcccCCceeeccccccCce--eEEeeCCCCCCCCC--------------------CceeeEEEecc
Q 011054 260 SLLLRKELAMSKRIEEKLSDSYELDGSEALGSY--LRIKPCSNNGPELS--------------------KCSIQWYRVPS 317 (494)
Q Consensus 260 ~v~L~KEL~~~kr~~en~~~~yeL~G~e~LGS~--L~i~~~~d~~~dlS--------------------kcsiQW~Rv~~ 317 (494)
....+..|+..++..=- ...|.+.-....|.. ||+---++..++.+ ++.|+=||+.|
T Consensus 122 ~~~~~~~L~~L~ktNv~-n~~F~I~hdG~fGTINGlRLGrl~~~~V~W~EINAA~Gq~~LLL~~la~~l~~~f~~y~l~P 200 (314)
T PF04111_consen 122 YEYASNQLDRLRKTNVY-NDTFHIWHDGPFGTINGLRLGRLPNVPVEWNEINAAWGQTALLLQTLAKKLNFKFQRYRLVP 200 (314)
T ss_dssp HHHHHHHHHCHHT--TT-TTT--EEEETTEEEETTEEE--BTTB---HHHHHHHHHHHHHHHHHHHHHCT---SSEEEE-
T ss_pred HHHHHHHHHHHHhcCch-hceeeEeecCCeeeECCeeeccCCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCcccceeEe
Confidence 34455666644443311 144554443355543 55554444444433 45556699999
Q ss_pred CCCccccccc------cccccccCCCCcccceee
Q 011054 318 EGGKRELISG------ATKSVYAPEPFDVGRILQ 345 (494)
Q Consensus 318 ~gsk~e~IsG------Atk~~YAPEP~DVGr~Lq 345 (494)
-||.--++.- .+-|.|.+.-|.+|++..
T Consensus 201 ~Gs~S~I~~~~~~~~~~~~~ly~~~~~~~~~~f~ 234 (314)
T PF04111_consen 201 MGSFSKIEKLEGDKDKTTYPLYSSGSFSLGRLFS 234 (314)
T ss_dssp -GGG-EEEECS---TCEEEESS--SS----GGG-
T ss_pred cCCCCEEEEeccCCCCeEEecccCCCchhhhhhh
Confidence 8887666543 445566666666666554
No 59
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=53.66 E-value=3.3e+02 Score=29.72 Aligned_cols=36 Identities=22% Similarity=0.120 Sum_probs=23.0
Q ss_pred ccccHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhh
Q 011054 239 VMDMEHELRALRIQLAEKSKCSLLLRKELAMSKRIE 274 (494)
Q Consensus 239 vMDmE~El~~LR~ql~eKs~~~v~L~KEL~~~kr~~ 274 (494)
-++|...|..||....+--...-++++.|...+|.-
T Consensus 399 q~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l 434 (569)
T PRK04778 399 QEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYL 434 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666777777776666666666667666555443
No 60
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=53.60 E-value=1.7e+02 Score=26.42 Aligned_cols=47 Identities=21% Similarity=0.302 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHHhhhhhhhhhHHH
Q 011054 105 KHVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQE 155 (494)
Q Consensus 105 r~vLLKkLr~~LesLrGRvaGrnKddveeaismVeaLavqltqrE~ELiQe 155 (494)
+.+|.|.+.++|+.=+.++. +++++|=..-+-..-.+.+-|..|.+-
T Consensus 26 ~~fl~kpi~~~l~~R~~~I~----~~l~~Ae~~~~ea~~~~~e~e~~l~~A 72 (164)
T PRK14473 26 RTFLYRPVLNLLNERTRRIE----ESLRDAEKVREQLANAKRDYEAELAKA 72 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888888887666664 345555444433333333333333333
No 61
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=53.56 E-value=1.4e+02 Score=29.01 Aligned_cols=72 Identities=19% Similarity=0.140 Sum_probs=55.3
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 011054 128 KDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEH 205 (494)
Q Consensus 128 KddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eeRa~A~aEIE~ArAaV~Rve~al~Eq 205 (494)
.++|.+|+.-+ +-.++|.+-...++|-.+.+ .+..|--+|++.+.+..+.|.+-+..|++-+.++...+++-
T Consensus 142 p~~v~~A~~~~-----~~A~~~~~a~~~~Aea~~~~-~i~~A~~ea~a~~~~Aeg~a~a~~~~A~g~~~~~~~~~~~~ 213 (262)
T cd03407 142 DAEVKRAMNEI-----NAAQRQRVAAVHKAEAEKIK-DIKAAEADAEAKRLQGVGAAEQRQAIADGLRESILSLADAV 213 (262)
T ss_pred CHHHHHHHHHH-----HHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677776653 33456666666677766664 47889999999999999999999999999999998888754
No 62
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=53.40 E-value=1.7e+02 Score=26.31 Aligned_cols=31 Identities=23% Similarity=0.226 Sum_probs=14.3
Q ss_pred HHHhhHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 011054 166 LKKASEDAKKLVDEERAFARAEIESARAAVQ 196 (494)
Q Consensus 166 lKqASeDAkkiV~eeRa~A~aEIE~ArAaV~ 196 (494)
|..|...|..|+++.+..|...++.|+....
T Consensus 63 L~~A~~ea~~ii~~A~~~a~~~~~~a~~~a~ 93 (159)
T PRK09173 63 RKEAEKEAADIVAAAEREAEALTAEAKRKTE 93 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555544444444444444333
No 63
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=53.37 E-value=2e+02 Score=30.02 Aligned_cols=78 Identities=24% Similarity=0.257 Sum_probs=43.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------cCcccHHHHHHHHHHHHhhhhccCCccccccHHHHHHHH
Q 011054 178 DEERAFARAEIESARAAVQRVEESLQEHEQMSRA-------SGKQDFEELMKEVQEARRIKMLHQPSKVMDMEHELRALR 250 (494)
Q Consensus 178 ~eeRa~A~aEIE~ArAaV~Rve~al~Eqe~~s~~-------s~kqd~e~L~~EvqEARRIKmLH~PSKvMDmE~El~~LR 250 (494)
+++...+++++..+++....++..+......... .-.+.+.++..+.++.+. +....-.+|+++..+|..|+
T Consensus 210 ~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~l~~-~y~~~hP~v~~l~~qi~~l~ 288 (498)
T TIGR03007 210 QEELEAARLELNEAIAQRDALKRQLGGEEPVLLAGSSVANSELDGRIEALEKQLDALRL-RYTDKHPDVIATKREIAQLE 288 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCcccccCCCchHHHHHHHHHHHHHHHH-HhcccChHHHHHHHHHHHHH
Confidence 3444555555555566555555544421111110 111246666666666654 33344457899999999999
Q ss_pred HHHHHH
Q 011054 251 IQLAEK 256 (494)
Q Consensus 251 ~ql~eK 256 (494)
.++.+-
T Consensus 289 ~~l~~~ 294 (498)
T TIGR03007 289 EQKEEE 294 (498)
T ss_pred HHHHhh
Confidence 987553
No 64
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=52.40 E-value=67 Score=26.60 Aligned_cols=65 Identities=12% Similarity=0.180 Sum_probs=32.7
Q ss_pred cCceeEEeeCCCCCCCCCCceeeEEEeccCCCcccc-----ccccccccccCCCCcccceeeeeeecCCcEEEE
Q 011054 289 LGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKREL-----ISGATKSVYAPEPFDVGRILQAEITYNGQQITL 357 (494)
Q Consensus 289 LGS~L~i~~~~d~~~dlSkcsiQW~Rv~~~gsk~e~-----IsGAtk~~YAPEP~DVGr~LqadI~~~g~k~~~ 357 (494)
.|+-..|........ +.-.+.|||..+....+.+ ++......|.++. +-+|. .+.+..++...+|
T Consensus 5 ~G~~vtL~C~~~~~~--~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~-~~~rf-~~~~~~~~~~~~L 74 (107)
T cd07700 5 TNNTVKLSCEAKGIS--ENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEV-SQEKF-SIRVTSDSSRYRL 74 (107)
T ss_pred CCCCEEEEEEEecCC--CCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEcccc-ccCcE-EEEEECCCCEEEE
Confidence 466666665433221 2338999999885322321 2334445666553 44553 4333444444333
No 65
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=52.38 E-value=1.9e+02 Score=26.57 Aligned_cols=31 Identities=19% Similarity=0.191 Sum_probs=18.5
Q ss_pred HHHhhHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 011054 166 LKKASEDAKKLVDEERAFARAEIESARAAVQ 196 (494)
Q Consensus 166 lKqASeDAkkiV~eeRa~A~aEIE~ArAaV~ 196 (494)
|++|-..|+.|+++.+..|..+.+...+...
T Consensus 77 l~~a~~ea~~ii~~A~~ea~~~~~~~~~~A~ 107 (173)
T PRK13460 77 LNSAKDEANAIVAEAKSDALKLKNKLLEETN 107 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666666666655554443
No 66
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=52.17 E-value=2.2e+02 Score=28.32 Aligned_cols=82 Identities=22% Similarity=0.385 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC---cccHHHHHHHHHHHHh
Q 011054 153 IQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHEQMSRASG---KQDFEELMKEVQEARR 229 (494)
Q Consensus 153 iQeK~EVkKlA~~lKqASeDAkkiV~eeRa~A~aEIE~ArAaV~Rve~al~Eqe~~s~~s~---kqd~e~L~~EvqEARR 229 (494)
++.|..+...--...++-.+..|-+.++ ++..|.|+.-....++-.++++....... .+.+..|.+.+.+.|+
T Consensus 182 l~~~~~~~~~ilq~d~~L~~~ek~~~~~----~~k~e~~e~e~~~l~e~~~~~~~~le~~~~~~ee~~~~L~ekme~e~~ 257 (297)
T PF02841_consen 182 LQSKESMENSILQADQQLTEKEKEIEEE----QAKAEAAEKEKEKLEEKQKEQEQMLEQQERSYEEHIKQLKEKMEEERE 257 (297)
T ss_dssp HHHCHHHHHHHHHH-TTS-HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333444444444333 34444555555555555555544433322 2366667777777776
Q ss_pred hhhccCCccc
Q 011054 230 IKMLHQPSKV 239 (494)
Q Consensus 230 IKmLH~PSKv 239 (494)
+++++..++
T Consensus 258 -~~~~e~e~~ 266 (297)
T PF02841_consen 258 -QLLQEQERL 266 (297)
T ss_dssp -HHHHHHHHH
T ss_pred -HHHHHHHHH
Confidence 666655543
No 67
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=51.66 E-value=1.7e+02 Score=25.85 Aligned_cols=30 Identities=27% Similarity=0.378 Sum_probs=15.9
Q ss_pred HHHHhhHHHHHHHHHHHHhHHHHHHHHHHH
Q 011054 165 FLKKASEDAKKLVDEERAFARAEIESARAA 194 (494)
Q Consensus 165 ~lKqASeDAkkiV~eeRa~A~aEIE~ArAa 194 (494)
-|.+|...|..|+++.+..|..+.+..++.
T Consensus 64 ~l~~a~~ea~~i~~~a~~ea~~~~~~~~~~ 93 (156)
T PRK05759 64 QLAEARAEAAEIIEQAKKRAAQIIEEAKAE 93 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555544443
No 68
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=50.67 E-value=2e+02 Score=26.38 Aligned_cols=69 Identities=19% Similarity=0.258 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhH
Q 011054 105 KHVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFA 184 (494)
Q Consensus 105 r~vLLKkLr~~LesLrGRvaGrnKddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eeRa~A 184 (494)
...+.|.+...|+.=+.++. +++++|-..-+-....+.+-|.. |..|...|..|+++.|..|
T Consensus 36 ~~~l~kpi~~~l~~R~~~I~----~~l~~Ae~~~~eA~~~~~e~e~~--------------L~~a~~ea~~ii~~A~~~a 97 (175)
T PRK14472 36 KKIAWGPILSALEEREKGIQ----SSIDRAHSAKDEAEAILRKNREL--------------LAKADAEADKIIREGKEYA 97 (175)
T ss_pred HHHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH
Confidence 34566777777776555443 23444444333333333333333 3344444445555554444
Q ss_pred HHHHHHH
Q 011054 185 RAEIESA 191 (494)
Q Consensus 185 ~aEIE~A 191 (494)
..+.+.+
T Consensus 98 ~~~~~~~ 104 (175)
T PRK14472 98 EKLRAEI 104 (175)
T ss_pred HHHHHHH
Confidence 4444433
No 69
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=50.53 E-value=2.3e+02 Score=27.21 Aligned_cols=20 Identities=25% Similarity=0.210 Sum_probs=8.3
Q ss_pred HhhHHHHHHHHHHHHhHHHH
Q 011054 168 KASEDAKKLVDEERAFARAE 187 (494)
Q Consensus 168 qASeDAkkiV~eeRa~A~aE 187 (494)
+|...|+.|+++.+..|..+
T Consensus 111 ~A~~eA~~Ii~~A~~eAe~~ 130 (205)
T PRK06231 111 NALAQAKEIIDQANYEALQL 130 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433
No 70
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=50.16 E-value=2.1e+02 Score=26.45 Aligned_cols=25 Identities=24% Similarity=0.222 Sum_probs=15.1
Q ss_pred HHHHhhHHHHHHHHHHHHhHHHHHH
Q 011054 165 FLKKASEDAKKLVDEERAFARAEIE 189 (494)
Q Consensus 165 ~lKqASeDAkkiV~eeRa~A~aEIE 189 (494)
-|++|...|+.|+++.+..|..+.+
T Consensus 82 ~L~~Ar~eA~~Ii~~A~~eAe~~~~ 106 (167)
T PRK08475 82 KLEEAKEKAELIVETAKKEAYILTQ 106 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666666665533
No 71
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=49.30 E-value=2e+02 Score=25.89 Aligned_cols=72 Identities=15% Similarity=0.241 Sum_probs=43.0
Q ss_pred HHHHHHHhhcccCCCChhhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHH
Q 011054 112 LRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEIES 190 (494)
Q Consensus 112 Lr~~LesLrGRvaGrnKddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eeRa~A~aEIE~ 190 (494)
|.++|+.=+.++. +++++|-..-+-..-.+.+-|.+|.+-+.|... .+.+|-.+|..+.++.+..|..+++.
T Consensus 27 i~~~l~~R~~~I~----~~l~~Ae~~~~eA~~~~~~~e~~L~~A~~ea~~---ii~~A~~~a~~~~~~a~~~a~~~~~~ 98 (159)
T PRK09173 27 IARSLDARADRIK----NELAEARRLREEAQQLLAEYQRKRKEAEKEAAD---IVAAAEREAEALTAEAKRKTEEYVAR 98 (159)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666555554 345555555555555566666666666655544 35556666666776666666666655
No 72
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=48.18 E-value=2.3e+02 Score=28.19 Aligned_cols=7 Identities=29% Similarity=0.486 Sum_probs=3.4
Q ss_pred eeeEEEE
Q 011054 383 EFHVVVT 389 (494)
Q Consensus 383 EFNVvi~ 389 (494)
-|-|+|.
T Consensus 315 ~~~V~i~ 321 (346)
T PRK10476 315 RFPVRIM 321 (346)
T ss_pred eeeEEEE
Confidence 3555553
No 73
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=48.01 E-value=2.8e+02 Score=27.15 Aligned_cols=26 Identities=31% Similarity=0.383 Sum_probs=15.4
Q ss_pred HHHhhHHHHHHHHHHHHhHHHHHHHH
Q 011054 166 LKKASEDAKKLVDEERAFARAEIESA 191 (494)
Q Consensus 166 lKqASeDAkkiV~eeRa~A~aEIE~A 191 (494)
|.+|-+.|..|+++.++.|..-.+.+
T Consensus 46 l~~Ar~eA~~Ii~~A~~~a~~~~~~~ 71 (255)
T TIGR03825 46 LEKAEAEAAQIIEQAEAQAAAIREQI 71 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666665544433
No 74
>PRK09039 hypothetical protein; Validated
Probab=47.75 E-value=3.4e+02 Score=28.10 Aligned_cols=44 Identities=20% Similarity=0.346 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccHHHHHHHHHHH
Q 011054 183 FARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEA 227 (494)
Q Consensus 183 ~A~aEIE~ArAaV~Rve~al~Eqe~~s~~s~kqd~e~L~~EvqEA 227 (494)
..+.||++-|+-..+++.+|.+.+...... +..++.|.++++.|
T Consensus 141 ~L~~qI~aLr~Qla~le~~L~~ae~~~~~~-~~~i~~L~~~L~~a 184 (343)
T PRK09039 141 LLNQQIAALRRQLAALEAALDASEKRDRES-QAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 467899999999999999999888776322 23677777777666
No 75
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=47.52 E-value=2e+02 Score=30.70 Aligned_cols=59 Identities=31% Similarity=0.385 Sum_probs=37.1
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011054 144 QLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEIESARAAVQRVEESL 202 (494)
Q Consensus 144 qltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eeRa~A~aEIE~ArAaV~Rve~al 202 (494)
-+.+|+....++-.+..+...-++.+-++.++.+.+.|..|+.-|+.|+....+..+.+
T Consensus 29 ~l~~R~~~I~~~L~eAe~a~~ea~~~~~~~e~~L~~Ak~ea~~Ii~~A~~~A~~~~~~~ 87 (445)
T PRK13428 29 LMAARQDTVRQQLAESATAADRLAEADQAHTKAVEDAKAEAARVVEEAREDAERIAEQL 87 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777666666666666666666666666666666666666666666655554333
No 76
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=47.50 E-value=1.6e+02 Score=27.17 Aligned_cols=36 Identities=17% Similarity=0.215 Sum_probs=26.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 011054 163 ADFLKKASEDAKKLVDEERAFARAEIESARAAVQRV 198 (494)
Q Consensus 163 A~~lKqASeDAkkiV~eeRa~A~aEIE~ArAaV~Rv 198 (494)
...+++|-..|++|+++.+..|...++.|+.-.+..
T Consensus 9 ~~il~~A~~ea~~il~~A~~~a~~i~~~a~~~a~~~ 44 (198)
T PRK03963 9 QEINREAEQKIEYILEEAQKEAEKIKEEARKRAESK 44 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888888888888888776655443
No 77
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=47.50 E-value=2e+02 Score=27.49 Aligned_cols=49 Identities=20% Similarity=0.306 Sum_probs=31.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccHHHHHHHHHHHH
Q 011054 176 LVDEERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEAR 228 (494)
Q Consensus 176 iV~eeRa~A~aEIE~ArAaV~Rve~al~Eqe~~s~~s~kqd~e~L~~EvqEAR 228 (494)
-..+||...-++++..+.-...++.-|+ ..+...++-++.|+++++.++
T Consensus 100 ~~~~eR~~~l~~l~~l~~~~~~l~~el~----~~~~~Dp~~i~~~~~~~~~~~ 148 (188)
T PF03962_consen 100 EESEEREELLEELEELKKELKELKKELE----KYSENDPEKIEKLKEEIKIAK 148 (188)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhcCHHHHHHHHHHHHHHH
Confidence 3447777777777777776666665555 334445566777777766655
No 78
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=47.17 E-value=1.9e+02 Score=28.25 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=9.3
Q ss_pred HHHHhhHHHHHHHHHHHHhHHHH
Q 011054 165 FLKKASEDAKKLVDEERAFARAE 187 (494)
Q Consensus 165 ~lKqASeDAkkiV~eeRa~A~aE 187 (494)
.+++|-..|.+|+++.+..+..|
T Consensus 43 Ii~eA~~EAe~ii~~A~~eae~e 65 (207)
T PRK01005 43 IIAEAQEEAEKIIRSAEETADQK 65 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444443333333
No 79
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=46.41 E-value=2.4e+02 Score=26.06 Aligned_cols=52 Identities=21% Similarity=0.231 Sum_probs=25.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 011054 148 REGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEIESARAAVQRVE 199 (494)
Q Consensus 148 rE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eeRa~A~aEIE~ArAaV~Rve 199 (494)
|+....+.-.+..+.-.-.++.-++++....+.|..|..-|+.|+...+...
T Consensus 54 R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~Ar~eA~~Ii~~A~~eAe~~~ 105 (167)
T PRK08475 54 RINKISKRLEEIQEKLKESKEKKEDALKKLEEAKEKAELIVETAKKEAYILT 105 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444455555555555555555555555554443
No 80
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=46.12 E-value=2.5e+02 Score=28.16 Aligned_cols=139 Identities=28% Similarity=0.347 Sum_probs=79.7
Q ss_pred hHHHHHHHHH----HHHHhhcccCCCChhhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 011054 105 KHVLLKKLRD----ALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEE 180 (494)
Q Consensus 105 r~vLLKkLr~----~LesLrGRvaGrnKddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~ee 180 (494)
|..|=++||. -|++||++=.+-|.....-.---+..|--+|--+|--.+.=.+|+.|.=. |-| ||
T Consensus 22 RE~lE~rLR~~lE~EL~~lr~qq~~~~~~~~~~~~~~~~~L~~~LrEkEErILaLEad~~kWEq---------kYL--EE 90 (205)
T PF12240_consen 22 REQLERRLRTRLERELESLRAQQRQGNSSGSSSPSNNASNLKELLREKEERILALEADMTKWEQ---------KYL--EE 90 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHH--HH
Confidence 3344455554 45688776554444333222233455666777777777777788877631 221 22
Q ss_pred HHhHHHHHH-HHHHHHHHHHHHHHHHHHhhhhcCcccHHHHHHHHHHHHhhhhccCCccccccHHHHHHHHHHHHHHhHH
Q 011054 181 RAFARAEIE-SARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQPSKVMDMEHELRALRIQLAEKSKC 259 (494)
Q Consensus 181 Ra~A~aEIE-~ArAaV~Rve~al~Eqe~~s~~s~kqd~e~L~~EvqEARRIKmLH~PSKvMDmE~El~~LR~ql~eKs~~ 259 (494)
-+.=++.++ .|.++-+|---.+.+....+-.+.-.++|++. ..-.|.-|||+=|+.|=.+|.||-.-
T Consensus 91 s~mrq~a~dAaa~aa~~rdttiI~~s~~~s~~~s~r~~eel~------------~a~~K~qemE~RIK~LhaqI~EKDAm 158 (205)
T PF12240_consen 91 SAMRQFAMDAAATAAAQRDTTIINHSPSESYNSSLREEEELH------------MANRKCQEMENRIKALHAQIAEKDAM 158 (205)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHhcCCCCCCCccccchHHHH------------HhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 222233332 35566666555555544444322223445442 22346789999999999999999877
Q ss_pred HHHHHHH
Q 011054 260 SLLLRKE 266 (494)
Q Consensus 260 ~v~L~KE 266 (494)
.-.||.-
T Consensus 159 IkVLQqr 165 (205)
T PF12240_consen 159 IKVLQQR 165 (205)
T ss_pred HHHHHhh
Confidence 6666654
No 81
>PRK11637 AmiB activator; Provisional
Probab=46.11 E-value=3.7e+02 Score=28.02 Aligned_cols=39 Identities=18% Similarity=0.311 Sum_probs=20.3
Q ss_pred EEeecCceeeehhhcccccccccccCCcchhhhhhhccccCCceE
Q 011054 411 IKLCKGKMTIAKEYYSTSMQLCGVRGGGNAAAQALFWQAKKGVSF 455 (494)
Q Consensus 411 ikL~KG~~t~AkE~YSssMQLCGvRGgg~AAa~AlfWq~rkglS~ 455 (494)
+....|-.+.+-+.-- ..|.-|+ .-.-.|||..+++-.+
T Consensus 381 ~~v~~G~~V~~G~~ig----~~g~~g~--~~~~~l~fei~~~~~~ 419 (428)
T PRK11637 381 ALVSVGAQVRAGQPIA----LVGSSGG--QGRPSLYFEIRRQGQA 419 (428)
T ss_pred CCCCCcCEECCCCeEE----eecCCCC--CCCCeEEEEEEECCEE
Confidence 3455666665554321 2233332 2344788888766543
No 82
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=46.04 E-value=1.3e+02 Score=29.67 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=10.2
Q ss_pred CCcEEEEeecC-CCCCCCCchhH
Q 011054 351 NGQQITLTTTG-AVDPAPGLGSY 372 (494)
Q Consensus 351 ~g~k~~~~T~G-PidpaaGL~~y 372 (494)
-|+.++++..+ |-.+-+|-..+
T Consensus 256 ~Gq~v~v~~~~~~~~~~~g~V~~ 278 (331)
T PRK03598 256 PGRKVLLYTDGRPDKPYHGQIGF 278 (331)
T ss_pred CCCEEEEEEcCCCCcEEEEEEEE
Confidence 45555555544 43333443333
No 83
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=45.44 E-value=2.5e+02 Score=25.90 Aligned_cols=41 Identities=27% Similarity=0.444 Sum_probs=20.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHH
Q 011054 148 REGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEIE 189 (494)
Q Consensus 148 rE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eeRa~A~aEIE 189 (494)
++||.+|.++- +.+-.-+..+++.++..++..+..|.....
T Consensus 46 k~Ge~~e~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d 86 (132)
T PF05597_consen 46 KEGEKLEKKTR-KKAEEQVEEARDQVKSRVDDVKERATGQWD 86 (132)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666542 122223333445555666666555544433
No 84
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=45.36 E-value=2.6e+02 Score=26.00 Aligned_cols=29 Identities=17% Similarity=0.072 Sum_probs=14.8
Q ss_pred HHHHhhHHHHHHHHHHHHhHHHHHHHHHH
Q 011054 165 FLKKASEDAKKLVDEERAFARAEIESARA 193 (494)
Q Consensus 165 ~lKqASeDAkkiV~eeRa~A~aEIE~ArA 193 (494)
-|.+|...|..++++.+..|..+.+...+
T Consensus 84 ~L~~A~~ea~~ii~~A~~~ae~~~~~il~ 112 (184)
T CHL00019 84 RLRQAELEADEIRVNGYSEIEREKENLIN 112 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555444433
No 85
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=44.55 E-value=3.1e+02 Score=26.70 Aligned_cols=26 Identities=15% Similarity=0.179 Sum_probs=14.7
Q ss_pred HHHhhHHHHHHHHHHHHhHHHHHHHH
Q 011054 166 LKKASEDAKKLVDEERAFARAEIESA 191 (494)
Q Consensus 166 lKqASeDAkkiV~eeRa~A~aEIE~A 191 (494)
|.+|...|..|+++.|..|.++.+..
T Consensus 66 l~~a~~ea~~i~~~A~~eA~~~~~~i 91 (246)
T TIGR03321 66 NEELDQQREVLLTKAKEEAQAERQRL 91 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666666665554433
No 86
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=44.14 E-value=1.9e+02 Score=24.27 Aligned_cols=97 Identities=30% Similarity=0.411 Sum_probs=49.5
Q ss_pred cchHHHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 011054 103 LEKHVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERA 182 (494)
Q Consensus 103 Ler~vLLKkLr~~LesLrGRvaGrnKddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eeRa 182 (494)
|+-..+..+.-.+-++|+.|- ...++|++.+.+-+-.- ++.+.=.+|-.++-++.|--.-++.+.+|+..++.+-+.
T Consensus 2 LDik~ir~n~e~v~~~l~~R~--~~~~~vd~i~~ld~~~r-~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~ 78 (108)
T PF02403_consen 2 LDIKLIRENPEEVRENLKKRG--GDEEDVDEIIELDQERR-ELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKE 78 (108)
T ss_dssp -SHHHHHHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHH
T ss_pred CCHHHHHhCHHHHHHHHHHcC--CCHhhHHHHHHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHH
Confidence 444455555555666666664 56788888887755442 222222334444444443333344444566666655443
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 011054 183 FARAEIESARAAVQRVEESLQ 203 (494)
Q Consensus 183 ~A~aEIE~ArAaV~Rve~al~ 203 (494)
-..+|....+.+..+++.+.
T Consensus 79 -lk~~i~~le~~~~~~e~~l~ 98 (108)
T PF02403_consen 79 -LKEEIKELEEQLKELEEELN 98 (108)
T ss_dssp -HHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHH
Confidence 23455555555555444443
No 87
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=44.12 E-value=2.7e+02 Score=25.88 Aligned_cols=25 Identities=8% Similarity=0.030 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Q 011054 172 DAKKLVDEERAFARAEIESARAAVQ 196 (494)
Q Consensus 172 DAkkiV~eeRa~A~aEIE~ArAaV~ 196 (494)
++++.+.+.|..|..-|+.|++...
T Consensus 80 e~e~~L~~A~~ea~~ii~~A~~~ae 104 (184)
T CHL00019 80 KARARLRQAELEADEIRVNGYSEIE 104 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444333
No 88
>PRK02224 chromosome segregation protein; Provisional
Probab=43.87 E-value=5.1e+02 Score=29.06 Aligned_cols=36 Identities=17% Similarity=0.126 Sum_probs=23.4
Q ss_pred CccccccHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q 011054 236 PSKVMDMEHELRALRIQLAEKSKCSLLLRKELAMSK 271 (494)
Q Consensus 236 PSKvMDmE~El~~LR~ql~eKs~~~v~L~KEL~~~k 271 (494)
|+++-+++.++..|+..+.+--.....+++.|...+
T Consensus 411 e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 446 (880)
T PRK02224 411 EDFLEELREERDELREREAELEATLRTARERVEEAE 446 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666777777777776666665566666666544
No 89
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=43.77 E-value=2.6e+02 Score=25.67 Aligned_cols=51 Identities=14% Similarity=0.150 Sum_probs=22.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 011054 148 REGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEIESARAAVQRV 198 (494)
Q Consensus 148 rE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eeRa~A~aEIE~ArAaV~Rv 198 (494)
|+......-.+..+.-.-..+.-+++++.+.+.|..|..-++.|+....+.
T Consensus 50 R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~ 100 (175)
T PRK14472 50 REKGIQSSIDRAHSAKDEAEAILRKNRELLAKADAEADKIIREGKEYAEKL 100 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333334444444445555555555555554444433
No 90
>PLN02320 seryl-tRNA synthetase
Probab=43.70 E-value=2.4e+02 Score=31.27 Aligned_cols=99 Identities=16% Similarity=0.263 Sum_probs=57.3
Q ss_pred hhcchHHHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHH--hhHHHHHHHH
Q 011054 101 ASLEKHVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKK--ASEDAKKLVD 178 (494)
Q Consensus 101 a~Ler~vLLKkLr~~LesLrGRvaGrnKddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKq--ASeDAkkiV~ 178 (494)
+.||-..+.++.-.+-++|+-|- .+. +|++-+++- .++.+--.++-+-++|-.++++-+++ ..+|+..+++
T Consensus 65 ~mlD~k~ir~n~~~v~~~l~~R~--~~~-~vd~l~~ld----~~~r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~ 137 (502)
T PLN02320 65 AAIDFKWIRDNKEAVAINIRNRN--SNA-NLELVLELY----ENMLALQKEVERLRAERNAVANKMKGKLEPSERQALVE 137 (502)
T ss_pred cccCHHHHHhCHHHHHHHHHhcC--CCc-CHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHH
Confidence 56887777777777777777773 333 366555543 33333334444444555555555543 3456666666
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011054 179 EERAFARAEIESARAAVQRVEESLQEHEQ 207 (494)
Q Consensus 179 eeRa~A~aEIE~ArAaV~Rve~al~Eqe~ 207 (494)
+-+.. ..+|....+.+..+++.|++.-.
T Consensus 138 ~~k~l-k~~i~~le~~~~~~~~~l~~~~l 165 (502)
T PLN02320 138 EGKNL-KEGLVTLEEDLVKLTDELQLEAQ 165 (502)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55543 35676667777777776666443
No 91
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=43.27 E-value=56 Score=31.45 Aligned_cols=26 Identities=35% Similarity=0.530 Sum_probs=24.6
Q ss_pred cHHHHHHHHHHHHHHhHHHHHHHHHH
Q 011054 242 MEHELRALRIQLAEKSKCSLLLRKEL 267 (494)
Q Consensus 242 mE~El~~LR~ql~eKs~~~v~L~KEL 267 (494)
.|.||..||+-|.-|-..|..|++.|
T Consensus 41 vEeEI~TLrqvL~aKer~~~eLKrkL 66 (162)
T PF04201_consen 41 VEEEIQTLRQVLAAKERHCAELKRKL 66 (162)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 39999999999999999999999987
No 92
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=42.37 E-value=3.3e+02 Score=26.37 Aligned_cols=31 Identities=32% Similarity=0.391 Sum_probs=20.3
Q ss_pred HHHHHhhHHHHHHHHHHHHhHHHHHHHHHHH
Q 011054 164 DFLKKASEDAKKLVDEERAFARAEIESARAA 194 (494)
Q Consensus 164 ~~lKqASeDAkkiV~eeRa~A~aEIE~ArAa 194 (494)
.-|++|...|..|+++.|..|..+.+..++.
T Consensus 112 ~~L~~Ar~eA~~Ii~~Ar~ea~~~~e~~~~~ 142 (204)
T PRK09174 112 QELAQARAKAHSIAQAAREAAKAKAEAERAA 142 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677777777777777776666665543
No 93
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=41.88 E-value=5.3e+02 Score=28.68 Aligned_cols=77 Identities=19% Similarity=0.268 Sum_probs=39.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh---hhh-----cCcccHHHHHH-------HHHHHHhhhhccCCcccccc
Q 011054 178 DEERAFARAEIESARAAVQRVEESLQEHEQM---SRA-----SGKQDFEELMK-------EVQEARRIKMLHQPSKVMDM 242 (494)
Q Consensus 178 ~eeRa~A~aEIE~ArAaV~Rve~al~Eqe~~---s~~-----s~kqd~e~L~~-------EvqEARRIKmLH~PSKvMDm 242 (494)
+.+.+.|+++...|++..+.++..++..... ... ....-+.+|+. +..+.+.. .-..=.+|.++
T Consensus 243 ~~ql~~a~~~~~~a~a~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~L~~~l~~l~~~~~~l~~~-y~~~hP~v~~l 321 (754)
T TIGR01005 243 NTELSRARANRAAAEGTADSVKKALQNGGSLDVLPEVLSSQLKLEDLIQRLRERQAELRATIADLSTT-MLANHPRVVAA 321 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhhhcCcccccHHHHHHHHHHHHHHHHHHHHHHh-hCCCCHHHHHH
Confidence 4556677777777777777777666542111 000 01122333333 33333332 22222347777
Q ss_pred HHHHHHHHHHHHH
Q 011054 243 EHELRALRIQLAE 255 (494)
Q Consensus 243 E~El~~LR~ql~e 255 (494)
+.+|..|+++|.+
T Consensus 322 ~~qi~~l~~~i~~ 334 (754)
T TIGR01005 322 KSSLADLDAQIRS 334 (754)
T ss_pred HHHHHHHHHHHHH
Confidence 7788877777654
No 94
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=41.82 E-value=2.8e+02 Score=25.43 Aligned_cols=31 Identities=19% Similarity=0.143 Sum_probs=21.1
Q ss_pred HHHHHhhHHHHHHHHHHHHhHHHHHHHHHHH
Q 011054 164 DFLKKASEDAKKLVDEERAFARAEIESARAA 194 (494)
Q Consensus 164 ~~lKqASeDAkkiV~eeRa~A~aEIE~ArAa 194 (494)
.-|.+|...|..|+++.+..|..+++.+++.
T Consensus 69 ~~L~~A~~ea~~Ii~~A~~~a~~~~~~~~~~ 99 (167)
T PRK14475 69 AEREEAERQAAAMLAAAKADARRMEAEAKEK 99 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677777777777777777776665553
No 95
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=41.37 E-value=4.8e+02 Score=28.07 Aligned_cols=77 Identities=25% Similarity=0.300 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccHHHHHHHHHHHHhhhhccCCccccccHHHHHHHHHH
Q 011054 173 AKKLVDEERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQPSKVMDMEHELRALRIQ 252 (494)
Q Consensus 173 AkkiV~eeRa~A~aEIE~ArAaV~Rve~al~Eqe~~s~~s~kqd~e~L~~EvqEARRIKmLH~PSKvMDmE~El~~LR~q 252 (494)
-+.-|++||..=.+.++.+++-|..+++++.... +...+++|+.-|+ .=+.+|+.-
T Consensus 365 i~~~v~~Er~~~~~~l~~~~~~~~~le~~~~~~~---------------~~~~~~~~~~~l~---------~a~~~l~~~ 420 (582)
T PF09731_consen 365 IKEKVEQERNGRLAKLAELNSRLKALEEALDARS---------------EAEDENRRAQQLW---------LAVDALKSA 420 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHH---------HHHHHHHHH
Confidence 3566889998888899999999998888877643 3345566666554 235566666
Q ss_pred HHHHhHHH-HHHHHHHHHhhhh
Q 011054 253 LAEKSKCS-LLLRKELAMSKRI 273 (494)
Q Consensus 253 l~eKs~~~-v~L~KEL~~~kr~ 273 (494)
|..-.... .-|..||...+..
T Consensus 421 l~~~~~~~~~p~~~el~~l~~~ 442 (582)
T PF09731_consen 421 LDSGNAGSPRPFEDELRALKEL 442 (582)
T ss_pred HHcCCCcCCCCHHHHHHHHHHh
Confidence 65544433 5667777666655
No 96
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=40.76 E-value=2.5e+02 Score=24.51 Aligned_cols=31 Identities=26% Similarity=0.193 Sum_probs=19.7
Q ss_pred HHHHHhhHHHHHHHHHHHHhHHHHHHHHHHH
Q 011054 164 DFLKKASEDAKKLVDEERAFARAEIESARAA 194 (494)
Q Consensus 164 ~~lKqASeDAkkiV~eeRa~A~aEIE~ArAa 194 (494)
.-|.+|...|+.|+++.|..|..+.+...+.
T Consensus 64 ~~L~~a~~ea~~i~~~a~~~a~~~~~~~~~~ 94 (140)
T PRK07353 64 QQLASARKQAQAVIAEAEAEADKLAAEALAE 94 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666677777777777776665555443
No 97
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=40.71 E-value=3.2e+02 Score=31.96 Aligned_cols=147 Identities=22% Similarity=0.331 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHH
Q 011054 107 VLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARA 186 (494)
Q Consensus 107 vLLKkLr~~LesLrGRvaGrnKddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eeRa~A~a 186 (494)
...=.||.++..|. .+++-+++.++....=.||+.+ .+|.|..-...++..-.-|++|-++- -...
T Consensus 427 ~~yL~Lr~a~~rL~---~~~~~~~~~~v~~~LW~lAl~i--EdG~ls~A~~~Lr~AQe~L~eAL~~g---------As~e 492 (820)
T PF13779_consen 427 GHYLGLRSARRRLE---RARTDEALREVADLLWDLALRI--EDGDLSDAERRLRAAQEALREALERG---------ASDE 492 (820)
T ss_pred HHHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHHHHHh--hcCcHHHHHHHHHHHHHHHHHHHHcC---------CCHH
Confidence 33446888888887 6789999999998888888877 57888877777777777777765531 1234
Q ss_pred HHH----HHHHHHHHHHHHHHHHHHhhh-------------hcCcccHHHHHHHHHHHHhh-------hhccCCccccc-
Q 011054 187 EIE----SARAAVQRVEESLQEHEQMSR-------------ASGKQDFEELMKEVQEARRI-------KMLHQPSKVMD- 241 (494)
Q Consensus 187 EIE----~ArAaV~Rve~al~Eqe~~s~-------------~s~kqd~e~L~~EvqEARRI-------KmLH~PSKvMD- 241 (494)
||+ .-|.|+++.=++|.|+.+... ....+|++.|+..+||.-|- .||.+=...|+
T Consensus 493 EI~rLm~eLR~A~~~ym~~LAeq~~~~~~~~~~p~~~~~~~~~~~~dL~~mmd~ie~la~~G~~~~A~q~L~qlq~mmen 572 (820)
T PF13779_consen 493 EIARLMQELREAMQDYMQALAEQAQRNPQQQDQPPDQGNSQMMSQQDLQRMMDRIEELARSGRMDEARQLLEQLQQMMEN 572 (820)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhCcccccCcccchhhhccCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 443 467888888888877655422 23466999999999986543 45554333333
Q ss_pred -------------cHHHHHHHHHHHHHHhHHHHHHHHHH
Q 011054 242 -------------MEHELRALRIQLAEKSKCSLLLRKEL 267 (494)
Q Consensus 242 -------------mE~El~~LR~ql~eKs~~~v~L~KEL 267 (494)
|..-++.|.+.+.+-...+-+-.+.+
T Consensus 573 mq~~~~q~~~~~~~~q~m~~L~dl~r~Qq~L~D~tfr~~ 611 (820)
T PF13779_consen 573 MQNAQPQQQQQQEMQQAMEELGDLLRRQQQLMDETFRQL 611 (820)
T ss_pred ccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55566666666666554444444443
No 98
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=40.51 E-value=5.9e+02 Score=28.81 Aligned_cols=52 Identities=29% Similarity=0.397 Sum_probs=21.9
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHH
Q 011054 141 LAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEIESARA 193 (494)
Q Consensus 141 LavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eeRa~A~aEIE~ArA 193 (494)
|--++.+-+.+|.+.+.+..+|-.-.+...... .-+.+|+..-..+.+.+++
T Consensus 169 l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~-e~l~~E~~~L~~q~~e~~~ 220 (546)
T PF07888_consen 169 LREEVERLEAELEQEEEEMEQLKQQQKELTESS-EELKEERESLKEQLAEARQ 220 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 333344444455555555555544443333222 2233444444444444443
No 99
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=40.13 E-value=57 Score=36.58 Aligned_cols=41 Identities=29% Similarity=0.467 Sum_probs=32.6
Q ss_pred cccccCCCCcccceeeeeee-cCCcE-------EEEeecCCCCCCCCchh
Q 011054 330 KSVYAPEPFDVGRILQAEIT-YNGQQ-------ITLTTTGAVDPAPGLGS 371 (494)
Q Consensus 330 k~~YAPEP~DVGr~LqadI~-~~g~k-------~~~~T~GPidpaaGL~~ 371 (494)
...|.|-+-|||.+|..+.+ .|+.. .++.| +|+-|+||.-.
T Consensus 180 ~~~y~p~~~d~g~~lk~~~~~~~~~~~~~~~~~~~~~t-~~v~~~p~p~~ 228 (606)
T PLN03144 180 SKTYTPTADDVGHVLKFECVVVDAETGLPVGHPQSILT-SRVIPAPSPTP 228 (606)
T ss_pred CccccCChhhCCceEEEEEEEcccccCCCCccceeecc-cceecCCCCCC
Confidence 45899999999999999987 45543 45555 89999998765
No 100
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=40.09 E-value=15 Score=28.64 Aligned_cols=50 Identities=28% Similarity=0.431 Sum_probs=33.2
Q ss_pred eeeehhhccccc-ccccccCCcchhhhhhhccccCCceEEEEeeccccchhHHHHHHh
Q 011054 418 MTIAKEYYSTSM-QLCGVRGGGNAAAQALFWQAKKGVSFVLAFESERERNATIMLARR 474 (494)
Q Consensus 418 ~t~AkE~YSssM-QLCGvRGgg~AAa~AlfWq~rkglS~vL~fESeReRNaAImLARr 474 (494)
....-|.|||.. -.||.+... ......|+-|+=| |.-.||-|||+-+++|
T Consensus 19 v~~v~~~~TSq~C~~CG~~~~~-~~~~r~~~C~~Cg------~~~~rD~naA~NI~~r 69 (69)
T PF07282_consen 19 VVEVDEAYTSQTCPRCGHRNKK-RRSGRVFTCPNCG------FEMDRDVNAARNILRR 69 (69)
T ss_pred EEEECCCCCccCccCccccccc-ccccceEEcCCCC------CEECcHHHHHHHHhcC
Confidence 345667784321 345555544 3466778877754 5568999999999986
No 101
>PRK01919 tatB sec-independent translocase; Provisional
Probab=39.84 E-value=93 Score=30.20 Aligned_cols=23 Identities=35% Similarity=0.680 Sum_probs=18.9
Q ss_pred ceeeEEEeccCCCccccccccccc
Q 011054 308 CSIQWYRVPSEGGKRELISGATKS 331 (494)
Q Consensus 308 csiQW~Rv~~~gsk~e~IsGAtk~ 331 (494)
..=|||+-.+ |-..-++|||-|-
T Consensus 132 a~p~wyk~~~-~~rt~~~sgaarv 154 (169)
T PRK01919 132 ATPQWYKRAS-GVRTRVQSGAARV 154 (169)
T ss_pred CCcHHHHHhh-cchhHhhhhHHHH
Confidence 3459999888 8899999999763
No 102
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=39.15 E-value=1e+02 Score=25.97 Aligned_cols=59 Identities=27% Similarity=0.391 Sum_probs=41.7
Q ss_pred cchHHHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Q 011054 103 LEKHVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFL 166 (494)
Q Consensus 103 Ler~vLLKkLr~~LesLrGRvaGrnKddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~l 166 (494)
-|...+-+-|+..|++|..-+ +|+++||.+||.=.-+.-=.+.|+.+-|.=|..+-+-+
T Consensus 35 ~e~~~~~~eL~~~l~~ie~~L-----~DL~~aV~ive~np~kF~l~~~Ei~~Rr~fv~~~~~~i 93 (97)
T PF09177_consen 35 EELKWLKRELRNALQSIEWDL-----EDLEEAVRIVEKNPSKFNLSEEEISRRRQFVSAIRNQI 93 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHCCHHHHT-HHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhCccccCCCHHHHHHHHHHHHHHHHHH
Confidence 345566778888888888754 89999999999876666556667777666665554433
No 103
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=39.02 E-value=4.3e+02 Score=26.82 Aligned_cols=17 Identities=24% Similarity=0.333 Sum_probs=9.7
Q ss_pred HHHHHHHHHHhcccchh
Q 011054 59 ARETAQLLEQQKRLSVR 75 (494)
Q Consensus 59 akEta~L~~q~kRLSVR 75 (494)
-+.--.+.+.+-||.-+
T Consensus 120 m~~q~~~vK~~aRl~aK 136 (325)
T PF08317_consen 120 MDNQFQLVKTYARLEAK 136 (325)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455666666666544
No 104
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=38.99 E-value=1.5e+02 Score=33.96 Aligned_cols=32 Identities=25% Similarity=0.310 Sum_probs=28.9
Q ss_pred ccHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 011054 241 DMEHELRALRIQLAEKSKCSLLLRKELAMSKR 272 (494)
Q Consensus 241 DmE~El~~LR~ql~eKs~~~v~L~KEL~~~kr 272 (494)
-|+.+|..|+..|.|+....-+|.++|+..++
T Consensus 478 ~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k 509 (652)
T COG2433 478 ARDRRIERLEKELEEKKKRVEELERKLAELRK 509 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999999999987764
No 105
>PHA02562 46 endonuclease subunit; Provisional
Probab=38.77 E-value=4.9e+02 Score=27.34 Aligned_cols=75 Identities=13% Similarity=0.193 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 011054 131 VEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHE 206 (494)
Q Consensus 131 veeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eeRa~A~aEIE~ArAaV~Rve~al~Eqe 206 (494)
++.-+.+++..-.++.+...++.+...++.++=+-+..-.++...+ .+++...++||++....+..+++-|++-+
T Consensus 311 l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~-~~~~~~l~~ei~~l~~~~~~~~~~l~~l~ 385 (562)
T PHA02562 311 LQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITL-VDKAKKVKAAIEELQAEFVDNAEELAKLQ 385 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhchHHHHHHHH
Confidence 3444444444444444444433333333444333333333333222 23344556666666666555554444433
No 106
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=38.40 E-value=2.4e+02 Score=26.75 Aligned_cols=75 Identities=11% Similarity=0.168 Sum_probs=50.9
Q ss_pred cchHHHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 011054 103 LEKHVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERA 182 (494)
Q Consensus 103 Ler~vLLKkLr~~LesLrGRvaGrnKddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eeRa 182 (494)
+=++++++++..+|+.=+.++.+ ++++|-.. +.|.+-+.+. .-.-|+.|...|..|..|.|.
T Consensus 26 ll~kf~~ppI~~iLe~R~~~I~~----~L~~Ae~~---------k~eAe~l~a~-----ye~~L~~Ar~eA~~I~~e~~~ 87 (155)
T PRK06569 26 FVYKFITPKAEEIFNNRQTNIQD----NITQADTL---------TIEVEKLNKY-----YNEEIDKTNTEIDRLKKEKID 87 (155)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHh----HHHHHHHH---------HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 34678899999999987666543 44444332 2233322222 234578899999999999999
Q ss_pred hHHHHHHHHHHHH
Q 011054 183 FARAEIESARAAV 195 (494)
Q Consensus 183 ~A~aEIE~ArAaV 195 (494)
.+.+|.+..|+++
T Consensus 88 ~~~a~~~~~~~~~ 100 (155)
T PRK06569 88 SLESEFLIKKKNL 100 (155)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988887764
No 107
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=38.14 E-value=3.6e+02 Score=26.07 Aligned_cols=103 Identities=30% Similarity=0.423 Sum_probs=58.6
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh---hcCccc
Q 011054 140 ALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHEQMSR---ASGKQD 216 (494)
Q Consensus 140 aLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eeRa~A~aEIE~ArAaV~Rve~al~Eqe~~s~---~s~kqd 216 (494)
++.-.+-..+.||..-+.++++ |++-++| |.+-+ |..-.-+++.+.+.++.-+.-+++-++... .+-..+
T Consensus 86 ~~~~klk~~~~el~k~~~~l~~----L~~L~~d-knL~e--ReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rq 158 (194)
T PF15619_consen 86 ELERKLKDKDEELLKTKDELKH----LKKLSED-KNLAE--REELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQ 158 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHc-CCchh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3445666778888888888887 4555544 34443 444455555555555544444444443322 222334
Q ss_pred HHHHHHHHHHHHhhhhccCCccccccHHHHHHHHHHHHHHh
Q 011054 217 FEELMKEVQEARRIKMLHQPSKVMDMEHELRALRIQLAEKS 257 (494)
Q Consensus 217 ~e~L~~EvqEARRIKmLH~PSKvMDmE~El~~LR~ql~eKs 257 (494)
+-.-++.+.+|. .++--++.||..|++.|.||-
T Consensus 159 l~~e~kK~~~~~--------~~~~~l~~ei~~L~~klkEKe 191 (194)
T PF15619_consen 159 LASEKKKHKEAQ--------EEVKSLQEEIQRLNQKLKEKE 191 (194)
T ss_pred HHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHh
Confidence 444444444443 234446678999999999885
No 108
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=38.12 E-value=5.5e+02 Score=29.68 Aligned_cols=96 Identities=24% Similarity=0.361 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011054 132 EEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHEQMSRA 211 (494)
Q Consensus 132 eeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eeRa~A~aEIE~ArAaV~Rve~al~Eqe~~s~~ 211 (494)
.+-=.+||.|.-+-+-=+.++.+.|.|+-+|=+-|-++....+ ....-.-||+.-.--+.+++..|+|+..
T Consensus 425 ~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~-----~~~~~~rei~~~~~~I~~L~~~L~e~~~---- 495 (652)
T COG2433 425 KKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR-----DKVRKDREIRARDRRIERLEKELEEKKK---- 495 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhhhHHHHHHHHHHHHHHHHHHHHHH----
Confidence 3334577777777777777788888888888777777665554 1122235677777777778888877643
Q ss_pred cCcccHHHHHHHHHHHHhhhhccCCcccc
Q 011054 212 SGKQDFEELMKEVQEARRIKMLHQPSKVM 240 (494)
Q Consensus 212 s~kqd~e~L~~EvqEARRIKmLH~PSKvM 240 (494)
.+|+|.++..+.|++++|-.--+.|
T Consensus 496 ----~ve~L~~~l~~l~k~~~lE~sG~g~ 520 (652)
T COG2433 496 ----RVEELERKLAELRKMRKLELSGKGT 520 (652)
T ss_pred ----HHHHHHHHHHHHHHHHhhhhcCCCc
Confidence 6788999999999888876655554
No 109
>COG1666 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.07 E-value=20 Score=34.57 Aligned_cols=23 Identities=39% Similarity=0.849 Sum_probs=19.5
Q ss_pred HHhhc---ccCCCChhhHHHHHHHHH
Q 011054 117 ESLRG---RVAGRNKDDVEEAIAMVE 139 (494)
Q Consensus 117 esLrG---RvaGrnKddveeaismVe 139 (494)
.++.| ||+|+++||+...|+||-
T Consensus 125 aqIQGdqVRVtgK~rDDLQaVialvr 150 (165)
T COG1666 125 AQIQGDQVRVTGKKRDDLQAVIALVR 150 (165)
T ss_pred eeeccceEEEeccchhhHHHHHHHHH
Confidence 34555 999999999999999984
No 110
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=37.87 E-value=4.2e+02 Score=26.37 Aligned_cols=20 Identities=35% Similarity=0.476 Sum_probs=11.4
Q ss_pred HHHhhhhhhhhhHHHHHHHH
Q 011054 141 LAVQLTQREGELIQEKAEVK 160 (494)
Q Consensus 141 LavqltqrE~ELiQeK~EVk 160 (494)
+..+||..|.++..++....
T Consensus 195 ~d~~L~~~ek~~~~~~~k~e 214 (297)
T PF02841_consen 195 ADQQLTEKEKEIEEEQAKAE 214 (297)
T ss_dssp H-TTS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45678877777766555443
No 111
>PRK12704 phosphodiesterase; Provisional
Probab=37.84 E-value=5.9e+02 Score=28.04 Aligned_cols=28 Identities=25% Similarity=0.315 Sum_probs=13.0
Q ss_pred HHhhHHHHHHHHHHHHhHHHHHHHHHHH
Q 011054 167 KKASEDAKKLVDEERAFARAEIESARAA 194 (494)
Q Consensus 167 KqASeDAkkiV~eeRa~A~aEIE~ArAa 194 (494)
++|--+|+....+.+..|..|+...|.-
T Consensus 45 keA~~eAke~~ke~~leaeeE~~~~R~E 72 (520)
T PRK12704 45 EEAKKEAEAIKKEALLEAKEEIHKLRNE 72 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455444444444444444444433
No 112
>PRK10807 paraquat-inducible protein B; Provisional
Probab=37.78 E-value=1.4e+02 Score=32.75 Aligned_cols=109 Identities=14% Similarity=0.252 Sum_probs=63.2
Q ss_pred CCCCchhHHHHHHHHHHHHHHhcccchhHhHHHhhhChhHHHhhhHHHH--hHH----hhhcchHHHHHHHHHHHHHhhc
Q 011054 48 DPKVLSMKEVVARETAQLLEQQKRLSVRDLANKFEKGLAAAAKLSEEAK--LRE----AASLEKHVLLKKLRDALESLRG 121 (494)
Q Consensus 48 d~~~~slKEvVakEta~L~~q~kRLSVRdLA~KFekgl~~AakLs~EaK--~re----va~Ler~vLLKkLr~~LesLrG 121 (494)
-|..||-=+-+.+-..+++++-.+|.+.++....+.-|..+.++..+.. +.+ +++=+.+.|-..|+..|.+|..
T Consensus 408 IPt~ps~l~~l~~~~~~il~kin~lple~i~~~l~~tL~~~~~tl~~l~~~l~~l~~ll~~~~~~~Lp~~L~~TL~~l~~ 487 (547)
T PRK10807 408 IPTVSGGLAQIQQKLMEALDKINNLPLNPMIEQATSTLSESQRTMRELQTTLDSLNKITSSQSMQQLPADMQKTLRELNR 487 (547)
T ss_pred eecCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHH
Confidence 3445555566677788899999999999999887666654444433311 000 0122233444666666666666
Q ss_pred ccCC------------CChhhHHHHHHHHHHHHHhhhhhhhhhHHHH
Q 011054 122 RVAG------------RNKDDVEEAIAMVEALAVQLTQREGELIQEK 156 (494)
Q Consensus 122 RvaG------------rnKddveeaismVeaLavqltqrE~ELiQeK 156 (494)
-++| ++-++++.+..=+..|.-+|.++-.-||..|
T Consensus 488 ~l~~~~~~s~~~~~l~~tl~~l~~~~r~lr~l~~~L~~~P~aLi~g~ 534 (547)
T PRK10807 488 SMQGFQPGSPAYNKMVADMQRLDQVLRELQPVLKTLNEKSNALVFEA 534 (547)
T ss_pred HHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhcCC
Confidence 6665 3334455555555556666655555555443
No 113
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=37.51 E-value=3.1e+02 Score=26.52 Aligned_cols=89 Identities=30% Similarity=0.443 Sum_probs=59.0
Q ss_pred hcchHHHHHHHHHHHHHhh--cccCCCC--hhhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHH-
Q 011054 102 SLEKHVLLKKLRDALESLR--GRVAGRN--KDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKL- 176 (494)
Q Consensus 102 ~Ler~vLLKkLr~~LesLr--GRvaGrn--KddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkki- 176 (494)
.|.-.|=-.++.++|+.|. |+|.-+| -+||++.+.- -|..|-..+++.++|-.+|++|. +..-+
T Consensus 97 ~ltiRVP~~~~~~~l~~l~~~g~v~~~~~~~~DvT~~y~D----------~~arl~~l~~~~~rl~~ll~ka~-~~~d~l 165 (262)
T PF14257_consen 97 SLTIRVPADKFDSFLDELSELGKVTSRNISSEDVTEQYVD----------LEARLKNLEAEEERLLELLEKAK-TVEDLL 165 (262)
T ss_pred EEEEEECHHHHHHHHHHHhccCceeeeeccccchHHHHHH----------HHHHHHHHHHHHHHHHHHHHhcC-CHHHHH
Confidence 4444444456666666665 5776665 4788886554 45567777888899999999886 44444
Q ss_pred -HHHHHHhHHHHHHHHHHHHHHHHHH
Q 011054 177 -VDEERAFARAEIESARAAVQRVEES 201 (494)
Q Consensus 177 -V~eeRa~A~aEIE~ArAaV~Rve~a 201 (494)
++.|=+.-+.|||+.+.-...+...
T Consensus 166 ~ie~~L~~v~~eIe~~~~~~~~l~~~ 191 (262)
T PF14257_consen 166 EIERELSRVRSEIEQLEGQLKYLDDR 191 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555566788999888766555443
No 114
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=37.47 E-value=3.9e+02 Score=25.86 Aligned_cols=92 Identities=26% Similarity=0.412 Sum_probs=74.3
Q ss_pred HHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH---hHH
Q 011054 109 LKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERA---FAR 185 (494)
Q Consensus 109 LKkLr~~LesLrGRvaGrnKddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eeRa---~A~ 185 (494)
|-+++|.|.-|..=+..+|-++.++ |.-+|+.-+.+|......++.|..-+..++...++-+..|+. .|+
T Consensus 98 l~k~~~~l~~L~~L~~dknL~eRee-------L~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~ 170 (194)
T PF15619_consen 98 LLKTKDELKHLKKLSEDKNLAEREE-------LQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQ 170 (194)
T ss_pred HHHHHHHHHHHHHHHHcCCchhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4468888888888888888877644 567777778888888888888999999999888888777764 577
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 011054 186 AEIESARAAVQRVEESLQEHEQ 207 (494)
Q Consensus 186 aEIE~ArAaV~Rve~al~Eqe~ 207 (494)
.++..+.-=|.++..-|+|.++
T Consensus 171 ~~~~~l~~ei~~L~~klkEKer 192 (194)
T PF15619_consen 171 EEVKSLQEEIQRLNQKLKEKER 192 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 8888888888999988888775
No 115
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=37.36 E-value=3.6e+02 Score=25.40 Aligned_cols=33 Identities=12% Similarity=0.260 Sum_probs=20.5
Q ss_pred HHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 011054 165 FLKKASEDAKKLVDEERAFARAEIESARAAVQR 197 (494)
Q Consensus 165 ~lKqASeDAkkiV~eeRa~A~aEIE~ArAaV~R 197 (494)
-|++|...|..|+++.+..|...++.|+.-...
T Consensus 64 ~L~~Ar~EA~~Ii~~A~~~a~~~~~ea~~eA~~ 96 (154)
T PRK06568 64 QIKKLETLRSQMIEESNEVTKKIIQEKTKEIEE 96 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666667777666666666665554433
No 116
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=37.13 E-value=3.4e+02 Score=25.08 Aligned_cols=51 Identities=16% Similarity=0.251 Sum_probs=24.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 011054 147 QREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEIESARAAVQR 197 (494)
Q Consensus 147 qrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eeRa~A~aEIE~ArAaV~R 197 (494)
+|+.....+-.+..+.-.-....-+++++...+.|..|..-++.|+....+
T Consensus 49 ~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~a~~~a~~ 99 (173)
T PRK13453 49 KRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQKILEDAKVQARQ 99 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444443333333333333444455555555555555555555555444
No 117
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=37.06 E-value=3.8e+02 Score=25.65 Aligned_cols=104 Identities=19% Similarity=0.298 Sum_probs=60.9
Q ss_pred HhhhcchHHHHHHHHHHHHHhhccc-CCC-----------ChhhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH-H
Q 011054 99 EAASLEKHVLLKKLRDALESLRGRV-AGR-----------NKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLAD-F 165 (494)
Q Consensus 99 eva~Ler~vLLKkLr~~LesLrGRv-aGr-----------nKddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~-~ 165 (494)
|+.+=+|..+-+.+++.|...-... .|= -.+++.+|+..+.+-.. +..+.++|-..-|. -
T Consensus 134 eil~~~R~~i~~~i~~~l~~~~~~~~~Gi~v~~v~i~~i~~p~~i~~a~~~~~~A~q-------~~~~~~~eae~~a~~~ 206 (266)
T cd03404 134 DVLTEGREEIAQDVRELLQAILDAYKAGIEIVGVNLQDADPPEEVQDAFDDVNKARQ-------DRERLINEAEAYANEV 206 (266)
T ss_pred HHHHhCHHHHHHHHHHHHHHHhhccCCCeEEEEEEEEeCCCCHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 3333346777776666664422211 132 24457777665432221 12233333333333 3
Q ss_pred HHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011054 166 LKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHEQMS 209 (494)
Q Consensus 166 lKqASeDAkkiV~eeRa~A~aEIE~ArAaV~Rve~al~Eqe~~s 209 (494)
+.+|-.+|.++.-+..+.+.+++..|++-..++...++.-.++.
T Consensus 207 ~~~A~~ea~~~~~~A~a~~~~~~~~ae~~a~~~~~~~~a~~~~~ 250 (266)
T cd03404 207 VPKARGEAARIIQEAEAYKEEVIAEAQGEAARFESLLAEYKKAP 250 (266)
T ss_pred HHHhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhCh
Confidence 46788899999999999999999999888888776666655443
No 118
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=37.00 E-value=3e+02 Score=24.40 Aligned_cols=101 Identities=24% Similarity=0.304 Sum_probs=65.5
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011054 128 KDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHEQ 207 (494)
Q Consensus 128 KddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eeRa~A~aEIE~ArAaV~Rve~al~Eqe~ 207 (494)
.++++..+.=.+-||-+....+.+|...|.++...-..++..-.-=..... +. ..-..-=+-.+...+++.+..+.+.
T Consensus 33 ~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~-~~-~~l~~~~s~~~l~~~L~~~~~e~ee 110 (150)
T PF07200_consen 33 QQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQ-QQ-DELSSNYSPDALLARLQAAASEAEE 110 (150)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-HHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-HHHHccCCHHHHHHHHHHHHHHHHH
Confidence 355666677778888888888999999999998877777664433322222 11 1113333556778888999888888
Q ss_pred hhhhc------CcccHHHHHHHHHHHHhh
Q 011054 208 MSRAS------GKQDFEELMKEVQEARRI 230 (494)
Q Consensus 208 ~s~~s------~kqd~e~L~~EvqEARRI 230 (494)
.|..- |+-|++...++-.+.|.+
T Consensus 111 eSe~lae~fl~g~~d~~~Fl~~f~~~R~~ 139 (150)
T PF07200_consen 111 ESEELAEEFLDGEIDVDDFLKQFKEKRKL 139 (150)
T ss_dssp HHHHHC-S-SSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 77654 334888888888887754
No 119
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=36.86 E-value=8.4e+02 Score=30.39 Aligned_cols=25 Identities=16% Similarity=0.387 Sum_probs=16.8
Q ss_pred hChhHHHhhhHH-HH-hHHhhhcchHHH
Q 011054 83 KGLAAAAKLSEE-AK-LREAASLEKHVL 108 (494)
Q Consensus 83 kgl~~AakLs~E-aK-~reva~Ler~vL 108 (494)
++|.-|+.++-- .+ || |--|++..+
T Consensus 722 d~LeQAtRiaygk~rr~R-VvTL~G~lI 748 (1293)
T KOG0996|consen 722 DNLEQATRIAYGKDRRWR-VVTLDGSLI 748 (1293)
T ss_pred cCHHHHHHHhhcCCCceE-EEEecceee
Confidence 456667777654 33 78 888888755
No 120
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=36.57 E-value=4.8e+02 Score=26.66 Aligned_cols=39 Identities=15% Similarity=0.193 Sum_probs=22.0
Q ss_pred cHHHHHHHHHHHHhhhhccCCccccccHHHHHHHHHHHHH
Q 011054 216 DFEELMKEVQEARRIKMLHQPSKVMDMEHELRALRIQLAE 255 (494)
Q Consensus 216 d~e~L~~EvqEARRIKmLH~PSKvMDmE~El~~LR~ql~e 255 (494)
++.++..+..+.+.. .-..=-+|.+++.+|..|+.+|.+
T Consensus 262 ~l~~le~~l~~l~~~-y~~~hP~v~~l~~~i~~l~~~l~~ 300 (444)
T TIGR03017 262 DIARAESKLAELSQR-LGPNHPQYKRAQAEINSLKSQLNA 300 (444)
T ss_pred HHHHHHHHHHHHHHH-hCCCCcHHHHHHHHHHHHHHHHHH
Confidence 344444555554432 233334666777778777777754
No 121
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=36.12 E-value=51 Score=25.87 Aligned_cols=22 Identities=18% Similarity=0.427 Sum_probs=15.4
Q ss_pred CceeEEeeCCCCCCCCCCceeeEEE
Q 011054 290 GSYLRIKPCSNNGPELSKCSIQWYR 314 (494)
Q Consensus 290 GS~L~i~~~~d~~~dlSkcsiQW~R 314 (494)
|+.+.+.....+.|.- .|.|||
T Consensus 1 G~~~~l~C~~~g~P~p---~v~W~k 22 (73)
T cd05852 1 GGRVIIECKPKAAPKP---KFSWSK 22 (73)
T ss_pred CCeEEEEEecceeCCC---EEEEEe
Confidence 5566666666666643 799998
No 122
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.07 E-value=2.9e+02 Score=30.81 Aligned_cols=119 Identities=30% Similarity=0.274 Sum_probs=65.4
Q ss_pred hhhhhhhhHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHhHHHHHHHHHH-----------HHHHHHHHHHHHHHhhhhc
Q 011054 145 LTQREGELIQEKAEVKKL-ADFLKKASEDAKKLVDEERAFARAEIESARA-----------AVQRVEESLQEHEQMSRAS 212 (494)
Q Consensus 145 ltqrE~ELiQeK~EVkKl-A~~lKqASeDAkkiV~eeRa~A~aEIE~ArA-----------aV~Rve~al~Eqe~~s~~s 212 (494)
..|+-.||---|.|-.|- .+-+.-|++|--.+ .-+-..|+||.|+-+| ||--|....+|.--+.+++
T Consensus 11 ~nqkrk~~~~a~ee~~~rq~a~~qa~q~dl~~l-rtql~~a~aeme~ikaia~vsE~tk~EaV~av~rq~~eeVaSlqa~ 89 (542)
T KOG0993|consen 11 FNQKRKELYLAKEEDLKRQNAVLQAAQDDLGHL-RTQLWEAQAEMENIKAIATVSEPTKSEAVSAVVRQEEEEVASLQAS 89 (542)
T ss_pred HHHhhhhcccchhhHHHhccchhhhhcchHHHH-HHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHhhccccchhHHH
Confidence 344444554445444333 33445566666444 4456778888887654 3333333333322222222
Q ss_pred C----------------------cccHHHHHHHHHHHHhhhhccCC-------------------ccccccHHHHHHHHH
Q 011054 213 G----------------------KQDFEELMKEVQEARRIKMLHQP-------------------SKVMDMEHELRALRI 251 (494)
Q Consensus 213 ~----------------------kqd~e~L~~EvqEARRIKmLH~P-------------------SKvMDmE~El~~LR~ 251 (494)
- .|+-+.+.+||..+++.----+| +-||-||.||..|..
T Consensus 90 ~k~~~~~ye~q~~~~leqertq~qq~~e~~erEv~~l~~llsr~~~~~~Lenem~ka~Ed~eKlrelv~pmekeI~elk~ 169 (542)
T KOG0993|consen 90 QKSPNPTYECQMCQNLEQERTQLQQNEEKLEREVKALMELLSRGQYQLDLENEMDKAKEDEEKLRELVTPMEKEINELKK 169 (542)
T ss_pred hcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhhHHHHHHHHhhHHHHHHHHHH
Confidence 1 24667778888777765322222 347889999999887
Q ss_pred HHHHHhHHHHHHHHHHH
Q 011054 252 QLAEKSKCSLLLRKELA 268 (494)
Q Consensus 252 ql~eKs~~~v~L~KEL~ 268 (494)
-+.+- -++-+||.
T Consensus 170 kl~~a----E~~i~El~ 182 (542)
T KOG0993|consen 170 KLAKA----EQRIDELS 182 (542)
T ss_pred HHHhH----HHHHHHHH
Confidence 76654 34455553
No 123
>PHA02562 46 endonuclease subunit; Provisional
Probab=35.79 E-value=5.4e+02 Score=27.00 Aligned_cols=33 Identities=27% Similarity=0.166 Sum_probs=27.8
Q ss_pred ccccHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q 011054 239 VMDMEHELRALRIQLAEKSKCSLLLRKELAMSK 271 (494)
Q Consensus 239 vMDmE~El~~LR~ql~eKs~~~v~L~KEL~~~k 271 (494)
+.+.+++|..|.+++.+-....-.+.||.....
T Consensus 374 ~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~~~~ 406 (562)
T PHA02562 374 FVDNAEELAKLQDELDKIVKTKSELVKEKYHRG 406 (562)
T ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777999999999999999998888888876543
No 124
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=35.65 E-value=6.3e+02 Score=27.76 Aligned_cols=26 Identities=23% Similarity=0.475 Sum_probs=19.1
Q ss_pred cCCCCCCCCchhHHHHHhhcCCceeeEEEEe
Q 011054 360 TGAVDPAPGLGSYVEALVRKHDVEFHVVVTQ 390 (494)
Q Consensus 360 ~GPidpaaGL~~yVEaL~rk~~tEFNVvi~Q 390 (494)
+|-|.| ..+|..+.|...||+-.|..
T Consensus 270 dgrihp-----~riee~~~~~~~~~~~~i~~ 295 (514)
T TIGR03319 270 DGRIHP-----ARIEEMVEKATKEVDNAIRE 295 (514)
T ss_pred cCCCCH-----HHHHHHHHHHHHHHHHHHHH
Confidence 566776 56788888888888766655
No 125
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]
Probab=35.28 E-value=2.1e+02 Score=26.01 Aligned_cols=40 Identities=35% Similarity=0.474 Sum_probs=26.3
Q ss_pred HHHhhHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHH
Q 011054 166 LKKASEDAKKLVDEERAFARAEIESARA-AVQRVEESLQEH 205 (494)
Q Consensus 166 lKqASeDAkkiV~eeRa~A~aEIE~ArA-aV~Rve~al~Eq 205 (494)
..+|-++++++|.+.|..|+-.|+.|-. |....++.|++.
T Consensus 23 IeeAkEe~~~~i~eAr~eareiieeaE~eA~~~~~e~l~~~ 63 (108)
T COG2811 23 IEEAKEEAEQIIKEAREEAREIIEEAEEEAEKLAQEILEEA 63 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888877777643 334444444443
No 126
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=35.24 E-value=3.4e+02 Score=27.35 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=12.2
Q ss_pred HHHHHhcccchhHhHHHhhhChh
Q 011054 64 QLLEQQKRLSVRDLANKFEKGLA 86 (494)
Q Consensus 64 ~L~~q~kRLSVRdLA~KFekgl~ 86 (494)
++.-+..-|.=|+++.+-.+-+.
T Consensus 65 ~~~~~~e~L~Sr~~~~~v~~~l~ 87 (362)
T TIGR01010 65 DTYTVQEYMRSRDMLAALEKELP 87 (362)
T ss_pred cHHHHHHHHhhHHHHHHHHhcCC
Confidence 34444455555666665555443
No 127
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=35.04 E-value=4.9e+02 Score=27.66 Aligned_cols=97 Identities=25% Similarity=0.327 Sum_probs=56.0
Q ss_pred cchHHHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHH---HhhHHHHHHHHH
Q 011054 103 LEKHVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLK---KASEDAKKLVDE 179 (494)
Q Consensus 103 Ler~vLLKkLr~~LesLrGRvaGrnKddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lK---qASeDAkkiV~e 179 (494)
||-..+.++.-.+-++|+-| |-+ .+|++-+++ --+|.+--.++-+-++|.++++.-++ +..+|+..+.++
T Consensus 2 lD~k~ir~n~~~v~~~l~~R--~~~-~~vd~i~~l----d~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~ 74 (425)
T PRK05431 2 LDIKLIRENPEAVKEALAKR--GFP-LDVDELLEL----DEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAE 74 (425)
T ss_pred CCHHHHHhCHHHHHHHHHhc--CCc-ccHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHH
Confidence 45555556666777888888 332 456655553 34444444444444455555555554 344466666666
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011054 180 ERAFARAEIESARAAVQRVEESLQEHEQ 207 (494)
Q Consensus 180 eRa~A~aEIE~ArAaV~Rve~al~Eqe~ 207 (494)
-+. ...+|....+....+++.+.+.-.
T Consensus 75 ~~~-l~~~~~~~~~~~~~~~~~~~~~~~ 101 (425)
T PRK05431 75 VKE-LKEEIKALEAELDELEAELEELLL 101 (425)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 553 455677777777777777766543
No 128
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=34.55 E-value=2.8e+02 Score=23.39 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=9.7
Q ss_pred HHhhHHHHHHHHHHHHhHHHHHHH
Q 011054 167 KKASEDAKKLVDEERAFARAEIES 190 (494)
Q Consensus 167 KqASeDAkkiV~eeRa~A~aEIE~ 190 (494)
+.|-.+|..++++.+..|..+++.
T Consensus 61 ~~a~~ea~~i~~~a~~~a~~~~~~ 84 (132)
T PF00430_consen 61 AEAREEAQEIIEEAKEEAEKEKEE 84 (132)
T ss_dssp HHHHHHHCHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443333
No 129
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=34.10 E-value=4.3e+02 Score=25.32 Aligned_cols=39 Identities=31% Similarity=0.546 Sum_probs=30.4
Q ss_pred HHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 011054 166 LKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQE 204 (494)
Q Consensus 166 lKqASeDAkkiV~eeRa~A~aEIE~ArAaV~Rve~al~E 204 (494)
+..|--+|.+++.+..+.+.+.+..|++-..++....+.
T Consensus 180 ~~~a~~~a~~~~~~Aea~~~~~~~~a~g~a~~~~~~~~a 218 (261)
T TIGR01933 180 VPKARGDAQRIIEEARGYKERRINRAKGDVARFTKLLAE 218 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 455777888888888888888888888888777665553
No 130
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=34.09 E-value=2.5e+02 Score=29.63 Aligned_cols=74 Identities=23% Similarity=0.345 Sum_probs=36.7
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccHHHHHHHHHHHH
Q 011054 151 ELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEAR 228 (494)
Q Consensus 151 ELiQeK~EVkKlA~~lKqASeDAkkiV~eeRa~A~aEIE~ArAaV~Rve~al~Eqe~~s~~s~kqd~e~L~~EvqEAR 228 (494)
+|.+|=.++.......+|-.|+-.++-+. ....|..-+--...+.+.|+.-+..+...+.+.+++|+++++++|
T Consensus 8 eL~~efq~Lqethr~Y~qKleel~~lQ~~----C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r~ 81 (330)
T PF07851_consen 8 ELQKEFQELQETHRSYKQKLEELSKLQDK----CSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKERR 81 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHH
Confidence 44444455555555555555554444332 223344444444444444444444444444556666666666655
No 131
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=33.63 E-value=8.9e+02 Score=28.87 Aligned_cols=19 Identities=42% Similarity=0.534 Sum_probs=9.3
Q ss_pred ccccHHHHHHHHHHHHHHh
Q 011054 239 VMDMEHELRALRIQLAEKS 257 (494)
Q Consensus 239 vMDmE~El~~LR~ql~eKs 257 (494)
..+|+.+|+.++..+.+..
T Consensus 886 ~~~l~~~l~~~~~~~~~~~ 904 (1163)
T COG1196 886 KEELEEELRELESELAELK 904 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455555555554444443
No 132
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=33.56 E-value=1.2e+02 Score=27.59 Aligned_cols=19 Identities=47% Similarity=0.607 Sum_probs=14.9
Q ss_pred HHhhhhccCCccccccHHHHHHHHHHHH
Q 011054 227 ARRIKMLHQPSKVMDMEHELRALRIQLA 254 (494)
Q Consensus 227 ARRIKmLH~PSKvMDmE~El~~LR~ql~ 254 (494)
.|||||| |+.|+..|..+.
T Consensus 52 ~rrIkML---------E~aLkqER~k~~ 70 (134)
T PF08232_consen 52 KRRIKML---------EYALKQERAKYK 70 (134)
T ss_pred HHHHHHH---------HHHHHHHHHHhh
Confidence 6999998 888887776653
No 133
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=33.53 E-value=13 Score=43.50 Aligned_cols=33 Identities=27% Similarity=0.332 Sum_probs=26.1
Q ss_pred CCCCCCCCceeeEEEeccCCCccccccccccccccCCCCcccceee
Q 011054 300 NNGPELSKCSIQWYRVPSEGGKRELISGATKSVYAPEPFDVGRILQ 345 (494)
Q Consensus 300 d~~~dlSkcsiQW~Rv~~~gsk~e~IsGAtk~~YAPEP~DVGr~Lq 345 (494)
=...|||+|+ |||++.- --.|-|+-.|||+.+-
T Consensus 536 ltgiDLS~c~-qW~~f~e------------IrY~R~~~~dvg~~~p 568 (1194)
T KOG4246|consen 536 LTGIDLSNCR-QWNPFLE------------IRYDRVGTDDVGVFSP 568 (1194)
T ss_pred ccccchhhhh-hhcchhe------------eEecccCccccccccc
Confidence 3568999997 9999862 1357888899999887
No 134
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=33.21 E-value=6.9e+02 Score=27.48 Aligned_cols=12 Identities=0% Similarity=0.171 Sum_probs=6.0
Q ss_pred eeeecCCcEEEE
Q 011054 346 AEITYNGQQITL 357 (494)
Q Consensus 346 adI~~~g~k~~~ 357 (494)
+||+.|.....|
T Consensus 236 vd~iiddtp~~v 247 (514)
T TIGR03319 236 VDLIIDDTPEAV 247 (514)
T ss_pred ceEEEcCCCCeE
Confidence 456555544444
No 135
>PTZ00464 SNF-7-like protein; Provisional
Probab=33.04 E-value=4.9e+02 Score=25.64 Aligned_cols=99 Identities=12% Similarity=0.198 Sum_probs=45.8
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhhH-----------HHHHHHHHHHHhHHH----------
Q 011054 128 KDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASE-----------DAKKLVDEERAFARA---------- 186 (494)
Q Consensus 128 KddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASe-----------DAkkiV~eeRa~A~a---------- 186 (494)
+....++|.-++-=.-+|.++...+-+|.+..++...-.+.++. -.||+.+..+.....
T Consensus 13 ~~t~~d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~~~~~~~K~~Al~~LK~KK~~E~ql~~l~~q~~nleq~~~ 92 (211)
T PTZ00464 13 KPTLEDASKRIGGRSEVVDARINKIDAELMKLKEQIQRTRGMTQSRHKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQLQF 92 (211)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666555555555555554444444433333221111110 136666665444332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhc----CcccHHHHHHHHHHH
Q 011054 187 EIESARAAVQRVEESLQEHEQMSRAS----GKQDFEELMKEVQEA 227 (494)
Q Consensus 187 EIE~ArAaV~Rve~al~Eqe~~s~~s----~kqd~e~L~~EvqEA 227 (494)
-||+|+..+. |-.|++.--...... .-.+||.|+.|++|.
T Consensus 93 ~ie~a~~~~~-vv~amk~g~kaLK~~~k~i~id~Vd~l~Dei~E~ 136 (211)
T PTZ00464 93 TTESVKDTKV-QVDAMKQAAKTLKKQFKKLNVDKVEDLQDELADL 136 (211)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3444444322 222333333332222 334888888888885
No 136
>PLN02678 seryl-tRNA synthetase
Probab=33.01 E-value=5.8e+02 Score=27.76 Aligned_cols=90 Identities=29% Similarity=0.270 Sum_probs=48.1
Q ss_pred HHHHHhhcccCCCChhhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHH
Q 011054 114 DALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEIESARA 193 (494)
Q Consensus 114 ~~LesLrGRvaGrnKddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eeRa~A~aEIE~ArA 193 (494)
.+-++|+-|- -+.+.|++.+++ +.--.++.++=.+|-.++.++.|--.-+|...+|+..++++-+. -..||....+
T Consensus 17 ~v~~~l~~R~--~~~~~id~il~l-d~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~-Lk~ei~~le~ 92 (448)
T PLN02678 17 LIRESQRRRF--ASVELVDEVIAL-DKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKE-LKKEITEKEA 92 (448)
T ss_pred HHHHHHHhhC--CCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHH-HHHHHHHHHH
Confidence 5666666663 233335555544 22233333333334344444433333334555666677665554 3467888888
Q ss_pred HHHHHHHHHHHHHH
Q 011054 194 AVQRVEESLQEHEQ 207 (494)
Q Consensus 194 aV~Rve~al~Eqe~ 207 (494)
.+..+++.+.+.-.
T Consensus 93 ~~~~~~~~l~~~~~ 106 (448)
T PLN02678 93 EVQEAKAALDAKLK 106 (448)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888877776543
No 137
>PF04461 DUF520: Protein of unknown function (DUF520); InterPro: IPR007551 This entry represents the UPF0234 family of uncharacterised proteins.; PDB: 1IN0_A.
Probab=32.87 E-value=23 Score=33.95 Aligned_cols=19 Identities=42% Similarity=0.882 Sum_probs=16.4
Q ss_pred ccCCCChhhHHHHHHHHHH
Q 011054 122 RVAGRNKDDVEEAIAMVEA 140 (494)
Q Consensus 122 RvaGrnKddveeaismVea 140 (494)
||.|+++||.-++|+++-.
T Consensus 129 RVtgKkrDDLQ~viallk~ 147 (160)
T PF04461_consen 129 RVTGKKRDDLQEVIALLKE 147 (160)
T ss_dssp EEEES-HHHHHHHHHHHHH
T ss_pred EEecCCHHHHHHHHHHHHc
Confidence 9999999999999999753
No 138
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=32.72 E-value=6.1e+02 Score=26.86 Aligned_cols=66 Identities=29% Similarity=0.324 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHH-HHHHHHHHHHhhHHHHHHH--HHHHHhHHHHHHHHHHHHHHHH
Q 011054 134 AIAMVEALAVQLTQREGELIQEKAE-VKKLADFLKKASEDAKKLV--DEERAFARAEIESARAAVQRVE 199 (494)
Q Consensus 134 aismVeaLavqltqrE~ELiQeK~E-VkKlA~~lKqASeDAkkiV--~eeRa~A~aEIE~ArAaV~Rve 199 (494)
+..-++.+--|+.+-...+.|.++. .++..+-+.-..+=+++-+ .+|...|++....|+|.+..-.
T Consensus 103 a~~~~~~~~a~~~~~~A~i~~a~a~~l~~a~~~~~R~~~L~~~g~vs~~~~~~a~~a~~~A~A~~~~a~ 171 (352)
T COG1566 103 AEAQLRNLRAQLASAQALIAQAEAQDLDQAQNELERRAELAQRGVVSREELDRARAALQAAEAALAAAQ 171 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhH
Confidence 3333333333333333344444442 4443333333333333333 6888889999999999987776
No 139
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=32.44 E-value=37 Score=28.90 Aligned_cols=73 Identities=22% Similarity=0.309 Sum_probs=13.3
Q ss_pred CCChhhHHHHHHHHH-----------HHHHhhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHH
Q 011054 125 GRNKDDVEEAIAMVE-----------ALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEIESARA 193 (494)
Q Consensus 125 GrnKddveeaismVe-----------aLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eeRa~A~aEIE~ArA 193 (494)
|-|+++|..-|.-|. .|-.++..-+.+|-+-+.....|-+.|-+|-.-|.+++......|..-|+.|+.
T Consensus 17 GYd~~eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~aq~~a~~~~~~A~~eA~~i~~~A~~ 96 (131)
T PF05103_consen 17 GYDPDEVDDFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQAQETADEIKAEAEEEAEEIIEEAQK 96 (131)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT------------------------------------------
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 667777766654432 222333333444444444555555666666666666666666666666666666
Q ss_pred HHHH
Q 011054 194 AVQR 197 (494)
Q Consensus 194 aV~R 197 (494)
-..+
T Consensus 97 ~a~~ 100 (131)
T PF05103_consen 97 EAEE 100 (131)
T ss_dssp ----
T ss_pred HHHH
Confidence 5544
No 140
>PRK03918 chromosome segregation protein; Provisional
Probab=31.85 E-value=7.6e+02 Score=27.56 Aligned_cols=34 Identities=21% Similarity=0.295 Sum_probs=12.8
Q ss_pred HHHhhcccCCCChhhHHHHHHHHHHHHHhhhhhh
Q 011054 116 LESLRGRVAGRNKDDVEEAIAMVEALAVQLTQRE 149 (494)
Q Consensus 116 LesLrGRvaGrnKddveeaismVeaLavqltqrE 149 (494)
+++|..++.+-+..++++-..=.+.+--++.+-+
T Consensus 505 ~~~l~~~l~~~~~~~l~~~~~~~~~l~~~~~~l~ 538 (880)
T PRK03918 505 LKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLK 538 (880)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344433333333333333333
No 141
>PRK10404 hypothetical protein; Provisional
Probab=30.91 E-value=3.6e+02 Score=23.77 Aligned_cols=45 Identities=18% Similarity=0.260 Sum_probs=35.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 011054 161 KLADFLKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEH 205 (494)
Q Consensus 161 KlA~~lKqASeDAkkiV~eeRa~A~aEIE~ArAaV~Rve~al~Eq 205 (494)
-+..+|+.++++++.=+++-|+.+.+-++.||......+..+.++
T Consensus 20 dle~Ll~~~~~~a~e~~~~lR~r~~~~L~~ar~~l~~~~~~~~~~ 64 (101)
T PRK10404 20 TLEEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQASDSYYYR 64 (101)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 345567888899999999999999999999998777776655554
No 142
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=30.84 E-value=8.8e+02 Score=27.96 Aligned_cols=27 Identities=30% Similarity=0.313 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 011054 152 LIQEKAEVKKLADFLKKASEDAKKLVD 178 (494)
Q Consensus 152 LiQeK~EVkKlA~~lKqASeDAkkiV~ 178 (494)
.-||-.++..+-+-.+.-++.|.+|.+
T Consensus 574 ~e~Ql~~L~~l~e~~~~l~~~ae~Lae 600 (717)
T PF10168_consen 574 KEQQLKELQELQEERKSLRESAEKLAE 600 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335555666666666666666666654
No 143
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=30.48 E-value=3.8e+02 Score=23.57 Aligned_cols=31 Identities=23% Similarity=0.436 Sum_probs=18.2
Q ss_pred HHHHhhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 011054 165 FLKKASEDAKKLVDEERAFARAEIESARAAV 195 (494)
Q Consensus 165 ~lKqASeDAkkiV~eeRa~A~aEIE~ArAaV 195 (494)
-|.+|...|+.|+++.+..|..+.+.+.+..
T Consensus 55 ~l~~A~~ea~~i~~~a~~~a~~~~~~~~~~a 85 (147)
T TIGR01144 55 ILKEAKDEAQEIIENANKRGSEILEEAKAEA 85 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666666666655555433
No 144
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=30.28 E-value=4.4e+02 Score=24.26 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=9.6
Q ss_pred HHHhhHHHHHHHHHHHHhHHHHH
Q 011054 166 LKKASEDAKKLVDEERAFARAEI 188 (494)
Q Consensus 166 lKqASeDAkkiV~eeRa~A~aEI 188 (494)
+.+|-.+|.++.++.+..|..|.
T Consensus 33 ~~ea~~~a~~i~~~~~~~a~~e~ 55 (188)
T PRK02292 33 IAEAEADAEEILEDREAEAEREI 55 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443333
No 145
>PF11657 Activator-TraM: Transcriptional activator TraM
Probab=30.21 E-value=4.8e+02 Score=24.66 Aligned_cols=62 Identities=27% Similarity=0.268 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccHHHHHHHHHHHHhhhhc
Q 011054 170 SEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKML 233 (494)
Q Consensus 170 SeDAkkiV~eeRa~A~aEIE~ArAaV~Rve~al~Eqe~~s~~s~kqd~e~L~~EvqEARRIKmL 233 (494)
.+|||+..|+-.+.|.+....+.. +-+++..++--...+..-...+.++..-++++||+-++
T Consensus 63 ~~dak~kAEkiL~aal~~ske~m~--~~l~e~~~~~~~avk~~i~~~~~~~~~~~~~~r~~a~~ 124 (144)
T PF11657_consen 63 GEDAKEKAEKILNAALAASKEAMN--KILQESAQEIVEAVKSEIDNSLAEVNDLVREARKAAIL 124 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777666666666664444322 22333333333332222233566677777888888664
No 146
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=30.07 E-value=9.1e+02 Score=27.89 Aligned_cols=29 Identities=17% Similarity=0.170 Sum_probs=15.1
Q ss_pred ccCCcchhhhhhhccccCCceEEEEeecc
Q 011054 434 VRGGGNAAAQALFWQAKKGVSFVLAFESE 462 (494)
Q Consensus 434 vRGgg~AAa~AlfWq~rkglS~vL~fESe 462 (494)
+-|=|..+=+..-|.-=+.+-+|..|...
T Consensus 739 IHGkGtG~Lr~~v~~~L~~~~~V~~f~~a 767 (782)
T PRK00409 739 IHGKGTGKLRKGVQEFLKKHPSVKSFRDA 767 (782)
T ss_pred EcCCChhHHHHHHHHHHcCCCceeeeeec
Confidence 33445445555555444555566666543
No 147
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=29.80 E-value=75 Score=34.95 Aligned_cols=13 Identities=23% Similarity=0.268 Sum_probs=11.1
Q ss_pred ccHHHHHHHHHHH
Q 011054 241 DMEHELRALRIQL 253 (494)
Q Consensus 241 DmE~El~~LR~ql 253 (494)
+||.|++.|+.|+
T Consensus 108 eLEaE~~~Lk~Ql 120 (475)
T PRK13729 108 KLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHH
Confidence 7888888888887
No 148
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=29.57 E-value=6.3e+02 Score=26.40 Aligned_cols=31 Identities=16% Similarity=0.100 Sum_probs=21.0
Q ss_pred ccHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q 011054 241 DMEHELRALRIQLAEKSKCSLLLRKELAMSK 271 (494)
Q Consensus 241 DmE~El~~LR~ql~eKs~~~v~L~KEL~~~k 271 (494)
+-+.|+..|.....-+......|.+-+...+
T Consensus 352 ~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~ 382 (498)
T TIGR03007 352 EVEAELTQLNRDYEVNKSNYEQLLTRRESAE 382 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888887777777766666666655444
No 149
>PRK10780 periplasmic chaperone; Provisional
Probab=29.57 E-value=4.4e+02 Score=24.10 Aligned_cols=46 Identities=15% Similarity=0.300 Sum_probs=21.1
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHH
Q 011054 140 ALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEI 188 (494)
Q Consensus 140 aLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eeRa~A~aEI 188 (494)
-|.-....++.||-....|..++..-|++ |+..+=+.+|..-+.||
T Consensus 47 ~le~~~~~~q~el~~~~~elq~~~~~~q~---~~~~ms~~~~~~~~~el 92 (165)
T PRK10780 47 QLENEFKGRASELQRMETDLQAKMQKLQR---DGSTMKGSDRTKLEKDV 92 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cccccCHHHHHHHHHHH
Confidence 33444444555555555555555544443 23334444444444444
No 150
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=29.23 E-value=4.3e+02 Score=23.88 Aligned_cols=9 Identities=22% Similarity=0.479 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 011054 173 AKKLVDEER 181 (494)
Q Consensus 173 AkkiV~eeR 181 (494)
|..|+++.|
T Consensus 76 a~~ii~~A~ 84 (164)
T PRK14471 76 RDAILKEAR 84 (164)
T ss_pred HHHHHHHHH
Confidence 333333333
No 151
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=29.22 E-value=1.2e+03 Score=29.10 Aligned_cols=141 Identities=25% Similarity=0.350 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHHhhh-----------------hhhhhhHHHHHHHHH-HHHHHHH
Q 011054 107 VLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLT-----------------QREGELIQEKAEVKK-LADFLKK 168 (494)
Q Consensus 107 vLLKkLr~~LesLrGRvaGrnKddveeaismVeaLavqlt-----------------qrE~ELiQeK~EVkK-lA~~lKq 168 (494)
...+.|++.++.+.|--.-.++|.|+++-.=.+-|+-.+. ....+|-.+..+.++ +.++-.+
T Consensus 885 ~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~ 964 (1293)
T KOG0996|consen 885 ARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEADIAKLTVAIKTSDRNIAKAQKKLSELEREIEDTEKELDDLTEE 964 (1293)
T ss_pred HHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHHHHHHhHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999889999999988877777643332 222222222222221 1111111
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccHHHHHHHHHHHHhhhhccCCccccccHHHHHH
Q 011054 169 ASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQPSKVMDMEHELRA 248 (494)
Q Consensus 169 ASeDAkkiV~eeRa~A~aEIE~ArAaV~Rve~al~Eqe~~s~~s~kqd~e~L~~EvqEARRIKmLH~PSKvMDmE~El~~ 248 (494)
...+-.+.++ -..++ -..++++.|....++.. +++++.+.+.+.+-.+.+ +||++-|++
T Consensus 965 ~~~~~~k~~E-----~~~~~-------~e~~~~~~E~k~~~~~~-k~~~e~i~k~~~~lk~~r--------Id~~~K~e~ 1023 (1293)
T KOG0996|consen 965 LKGLEEKAAE-----LEKEY-------KEAEESLKEIKKELRDL-KSELENIKKSENELKAER--------IDIENKLEA 1023 (1293)
T ss_pred HhhhHHHHHH-----HHHHH-------HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhh--------ccHHHHHHH
Confidence 1111112222 11222 22334455554444433 447777777777655433 578999999
Q ss_pred HHHHHHHHhHHHHHHHHHHH
Q 011054 249 LRIQLAEKSKCSLLLRKELA 268 (494)
Q Consensus 249 LR~ql~eKs~~~v~L~KEL~ 268 (494)
.+.++.|--...-+..|.+.
T Consensus 1024 ~~~~l~e~~~~~~~~~k~~~ 1043 (1293)
T KOG0996|consen 1024 INGELNEIESKIKQPEKELK 1043 (1293)
T ss_pred HHHHHHHHHhhhhhHHHhhC
Confidence 99888887776666666553
No 152
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=29.21 E-value=8.2e+02 Score=27.07 Aligned_cols=58 Identities=21% Similarity=0.169 Sum_probs=36.8
Q ss_pred cccccccccCCCC---cccceee-ee-ee--cCCcEEEEeecCCCCCCCCchhHHHHHhhcCCceeeEEE
Q 011054 326 SGATKSVYAPEPF---DVGRILQ-AE-IT--YNGQQITLTTTGAVDPAPGLGSYVEALVRKHDVEFHVVV 388 (494)
Q Consensus 326 sGAtk~~YAPEP~---DVGr~Lq-ad-I~--~~g~k~~~~T~GPidpaaGL~~yVEaL~rk~~tEFNVvi 388 (494)
+|-+-|+.-=+|| |--+.-. ++ +. ...|.+.++|+.-|++ .|.+.|-..-+-+|.++-
T Consensus 572 ~~~~~p~iiD~p~~~lD~~~r~~l~~~~~~~~~~QvIils~d~e~~~-----~~~~~l~~~i~~~y~l~y 636 (650)
T TIGR03185 572 SGRRLPVIIDTPLGRLDSSHRENLVVNYFPKASHQVLLLSTDEEVDE-----KHYNLLKPNISHEYLLEF 636 (650)
T ss_pred cCCCCCEEEcCCccccChHHHHHHHHHHhhccCCeEEEEechHhhCH-----HHHHHHHHHhhhheEEEe
Confidence 5666677777887 4333111 11 21 3578888888888884 577777666777777665
No 153
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=29.11 E-value=8.9e+02 Score=27.47 Aligned_cols=28 Identities=36% Similarity=0.462 Sum_probs=21.0
Q ss_pred cHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 011054 242 MEHELRALRIQLAEKSKCSLLLRKELAM 269 (494)
Q Consensus 242 mE~El~~LR~ql~eKs~~~v~L~KEL~~ 269 (494)
+..+|+.++.++...-...+.|++||.-
T Consensus 288 LkeqLr~~qe~lqaSqq~~~~L~~EL~~ 315 (546)
T PF07888_consen 288 LKEQLRSAQEQLQASQQEAELLRKELSD 315 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777778887777788888888853
No 154
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=29.03 E-value=1.2e+03 Score=29.52 Aligned_cols=39 Identities=23% Similarity=0.436 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCcc--cHHHHHHHHH
Q 011054 187 EIESARAAVQRVEESLQEHEQMSRASGKQ--DFEELMKEVQ 225 (494)
Q Consensus 187 EIE~ArAaV~Rve~al~Eqe~~s~~s~kq--d~e~L~~Evq 225 (494)
-|+-|+.-+.+|++-..--|...++..+| +++..++|++
T Consensus 1592 ~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk 1632 (1758)
T KOG0994|consen 1592 DIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELK 1632 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555554 5666666554
No 155
>PRK06328 type III secretion system protein; Validated
Probab=28.93 E-value=5.3e+02 Score=25.21 Aligned_cols=37 Identities=22% Similarity=0.252 Sum_probs=26.4
Q ss_pred ccceeeeeee-cCCcEEEEeecCCCCCCCCchhHHHHHhh
Q 011054 340 VGRILQAEIT-YNGQQITLTTTGAVDPAPGLGSYVEALVR 378 (494)
Q Consensus 340 VGr~LqadI~-~~g~k~~~~T~GPidpaaGL~~yVEaL~r 378 (494)
.+|.+.+|-. ..|.-..=+-.|=|| ++|....+.|-+
T Consensus 161 ~~~~I~~D~~L~~GgCiIET~~G~VD--asle~ql~~l~~ 198 (223)
T PRK06328 161 DSLIISPKADVTPGGCIIETEAGIIN--AQLDVQLAALEK 198 (223)
T ss_pred CceEEEeCCCCCCCCeEEEeCCceEE--ecHHHHHHHHHH
Confidence 4667777764 556666666778888 888888877654
No 156
>KOG1772 consensus Vacuolar H+-ATPase V1 sector, subunit G [Energy production and conversion]
Probab=28.82 E-value=3.5e+02 Score=24.85 Aligned_cols=39 Identities=36% Similarity=0.398 Sum_probs=20.3
Q ss_pred hhhhhhhhhHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHH
Q 011054 144 QLTQREGELIQEKAEVKK-LADFLKKASEDAKKLVDEERA 182 (494)
Q Consensus 144 qltqrE~ELiQeK~EVkK-lA~~lKqASeDAkkiV~eeRa 182 (494)
||-|-|.+.-.-=.+-+| =..-||||-++|.+-|++=|+
T Consensus 10 QLLqAEK~A~e~V~~ARk~K~~RLKQAKeEA~~Eie~yr~ 49 (108)
T KOG1772|consen 10 QLLQAEKRAAEKVEEARKRKLRRLKQAKEEAEKEIEEYRS 49 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555544332222222 234577777777766666554
No 157
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=28.63 E-value=3.6e+02 Score=22.85 Aligned_cols=32 Identities=22% Similarity=0.370 Sum_probs=23.1
Q ss_pred HHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 011054 164 DFLKKASEDAKKLVDEERAFARAEIESARAAV 195 (494)
Q Consensus 164 ~~lKqASeDAkkiV~eeRa~A~aEIE~ArAaV 195 (494)
..+.+|-....+++.+.|..|..||+..|+-.
T Consensus 18 ~iV~~Ar~~r~~~lk~Ak~eA~~ei~~~r~~~ 49 (105)
T PF03179_consen 18 EIVEEARKEREQRLKQAKEEAEKEIEEFRAEA 49 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777778888888888887777644
No 158
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=28.60 E-value=2e+02 Score=31.02 Aligned_cols=63 Identities=17% Similarity=0.099 Sum_probs=38.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccHHHHHHHHHHHHhhhhcc
Q 011054 160 KKLADFLKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLH 234 (494)
Q Consensus 160 kKlA~~lKqASeDAkkiV~eeRa~A~aEIE~ArAaV~Rve~al~Eqe~~s~~s~kqd~e~L~~EvqEARRIKmLH 234 (494)
.-++..|+...+|. +++....|....+|||..++++..++.+ ..+.-.+.++++.++ |+..++
T Consensus 401 p~l~r~l~~~~~~~-----~~~e~~~a~~~~~~aa~~~l~~~~~~~~-----~~~~~~~~l~~~~~~--~~~~~~ 463 (525)
T TIGR00831 401 PIFVKRKFVSEHSE-----RELEEIIARYIAARSAKFALMKAVEQLR-----IVEPVARELLPELDA--RIEELR 463 (525)
T ss_pred HHHHHhcCCCCCCh-----hhHHHHHHHHHHHHHHHHHHHHHHhccC-----CCHHHHHHHHHHHHH--HHHHHH
Confidence 44555555444432 3455567778889999999987776653 122346777777763 444443
No 159
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=28.60 E-value=7.9e+02 Score=26.72 Aligned_cols=42 Identities=14% Similarity=0.208 Sum_probs=27.6
Q ss_pred cCcccHHHHHHHHHHHHhhhhccCCccccccHHHHHHHHHHHH
Q 011054 212 SGKQDFEELMKEVQEARRIKMLHQPSKVMDMEHELRALRIQLA 254 (494)
Q Consensus 212 s~kqd~e~L~~EvqEARRIKmLH~PSKvMDmE~El~~LR~ql~ 254 (494)
..++.++++...+..-++.+.-|.|+ +.++-..+..++..|.
T Consensus 298 ~dp~~L~ele~RL~~l~~LkrKyg~s-~e~l~~~~~~l~~eL~ 339 (563)
T TIGR00634 298 FDPERLNEIEERLAQIKRLKRKYGAS-VEEVLEYAEKIKEELD 339 (563)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHH
Confidence 34567888999999899999888875 4444444444444433
No 160
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=28.57 E-value=9.6e+02 Score=27.66 Aligned_cols=47 Identities=28% Similarity=0.413 Sum_probs=23.4
Q ss_pred hcchHHHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHH------HHhhhhhhhhhHHH
Q 011054 102 SLEKHVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEAL------AVQLTQREGELIQE 155 (494)
Q Consensus 102 ~Ler~vLLKkLr~~LesLrGRvaGrnKddveeaismVeaL------avqltqrE~ELiQe 155 (494)
.||.+ +|+||.-|.+.|. .-.|..--|++.+.- .++--|.|+|.+|-
T Consensus 422 rLE~d--vkkLraeLq~~Rq-----~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~ 474 (697)
T PF09726_consen 422 RLEAD--VKKLRAELQSSRQ-----SEQELRSQISSLTNNERSLKSELSQLRQENEQLQN 474 (697)
T ss_pred HHHHH--HHHHHHHHHhhhh-----hHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHH
Confidence 45555 4777777766553 122333333333321 23445566666665
No 161
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.46 E-value=9.9e+02 Score=27.86 Aligned_cols=106 Identities=24% Similarity=0.380 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHH-------------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh---hhhcCcccHHH
Q 011054 156 KAEVKKLADFLKKASEDAKKL-------------VDEERAFARAEIESARAAVQRVEESLQEHEQM---SRASGKQDFEE 219 (494)
Q Consensus 156 K~EVkKlA~~lKqASeDAkki-------------V~eeRa~A~aEIE~ArAaV~Rve~al~Eqe~~---s~~s~kqd~e~ 219 (494)
+.||..|..-|-|+++|--+- ..+-=..-.||.+++|.-+....+||-+-... +-.+|-..-|-
T Consensus 14 r~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~Ees 93 (772)
T KOG0999|consen 14 RQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEEREES 93 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHH
Confidence 445555555566655553221 11122234567778888888888887653322 22333333344
Q ss_pred HHHHHHHHHhhhhccCCccccccHHHHHHHHHHHHHHhHHHHHHHH
Q 011054 220 LMKEVQEARRIKMLHQPSKVMDMEHELRALRIQLAEKSKCSLLLRK 265 (494)
Q Consensus 220 L~~EvqEARRIKmLH~PSKvMDmE~El~~LR~ql~eKs~~~v~L~K 265 (494)
|-.|-- |+---.| -|+.+||+||..||+-+.++-.+--.|.+
T Consensus 94 LLqESa-akE~~yl---~kI~eleneLKq~r~el~~~q~E~erl~~ 135 (772)
T KOG0999|consen 94 LLQESA-AKEEYYL---QKILELENELKQLRQELTNVQEENERLEK 135 (772)
T ss_pred HHHHHH-HhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443321 1111111 26789999999999999887655444433
No 162
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=28.37 E-value=74 Score=28.97 Aligned_cols=72 Identities=31% Similarity=0.400 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHh-hhhcCcccHHHHHHHHHHHHhhhhcc--CCccccccHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 011054 192 RAAVQRVEESLQEHEQM-SRASGKQDFEELMKEVQEARRIKMLH--QPSKVMDMEHELRALRIQLAEKSKCSLLLRKELA 268 (494)
Q Consensus 192 rAaV~Rve~al~Eqe~~-s~~s~kqd~e~L~~EvqEARRIKmLH--~PSKvMDmE~El~~LR~ql~eKs~~~v~L~KEL~ 268 (494)
+++|+++=..|-++... ....|||-+=-...+ -+. .|....+|+.||..|+.++.+-...+-.|+.||.
T Consensus 32 K~~v~k~Ld~L~~~g~i~~K~~GKqkiY~~~Q~--------~~~~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~ 103 (169)
T PF07106_consen 32 KTAVQKALDSLVEEGKIVEKEYGKQKIYFANQD--------ELEVPSPEELAELDAEIKELREELAELKKEVKSLEAELA 103 (169)
T ss_pred HHHHHHHHHHHHhCCCeeeeeecceEEEeeCcc--------ccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777766666555444 566676511000000 011 2344667788888888888888888888888886
Q ss_pred Hhh
Q 011054 269 MSK 271 (494)
Q Consensus 269 ~~k 271 (494)
-..
T Consensus 104 ~L~ 106 (169)
T PF07106_consen 104 SLS 106 (169)
T ss_pred HHh
Confidence 444
No 163
>PF11740 KfrA_N: Plasmid replication region DNA-binding N-term; InterPro: IPR021104 The KfrA family of protiens are encoded on plasmids, generally in or near gene clusters invloved in stable inheritance functions. These proteins are thought to form an all-helical structure, consisting of an N-terminal helix-turn-helix DNA binding domain and an extended coiled-coil tail. The best-characterised KfrA protein, encoded on the broad host-range Plasmid RK2, is a site-specific DNA-binding protein whose operator overlaps its own promoter. The DNA-binding domain is essential for function, while the coiled-coil domain is probably responsible for formation of multimers, and may provide an example of a bridge to host structures required for plasmid partitioning []. This entry represents the N-terminal DNA-binding domain.
Probab=28.25 E-value=3.2e+02 Score=23.03 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=17.2
Q ss_pred HHHHHHHhcccchhHhHHHhhhC
Q 011054 62 TAQLLEQQKRLSVRDLANKFEKG 84 (494)
Q Consensus 62 ta~L~~q~kRLSVRdLA~KFekg 84 (494)
...|...-++.||+-+-...=+|
T Consensus 10 a~~L~~~G~~pT~~~Vr~~lG~G 32 (120)
T PF11740_consen 10 ADELLAAGKKPTVRAVRERLGGG 32 (120)
T ss_pred HHHHHHcCCCCCHHHHHHHHCCC
Confidence 66777888888888887777644
No 164
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=28.02 E-value=7.7e+02 Score=26.39 Aligned_cols=26 Identities=27% Similarity=0.144 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHh
Q 011054 245 ELRALRIQLAEKSKCSLLLRKELAMS 270 (494)
Q Consensus 245 El~~LR~ql~eKs~~~v~L~KEL~~~ 270 (494)
+++.|..++.+-....-.|++||+..
T Consensus 146 ~~~~~~~~~~~~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 146 EDREAERRIRELEKQLSELQNELNAL 171 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444444445567776544
No 165
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=27.82 E-value=1.1e+02 Score=24.16 Aligned_cols=52 Identities=21% Similarity=0.215 Sum_probs=28.1
Q ss_pred cCceeEEeeCCCCCCCCCCceeeEEEeccCCCccccccccccccccCCCCcccce
Q 011054 289 LGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELISGATKSVYAPEPFDVGRI 343 (494)
Q Consensus 289 LGS~L~i~~~~d~~~dlSkcsiQW~Rv~~~gsk~e~IsGAtk~~YAPEP~DVGr~ 343 (494)
.|....+....+.. .+.-.+.|||..++.....++..-....+ +.|..-+|+
T Consensus 5 ~G~~v~L~C~~~~~--~~~~~v~W~k~~~~~~~~~i~~~~~~~~~-~~~~~~~r~ 56 (105)
T cd00099 5 EGESVTLSCTYSGS--FSSYYIFWYRQKPGKGPELLIYISSNGSQ-YAGGVKGRF 56 (105)
T ss_pred CCCCEEEEEEEeCC--cCcceEEEEEECCCCCCEEEEEEeCCCCc-cCccCCCcE
Confidence 35555555443433 34558999999885455555544333333 344445553
No 166
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=27.53 E-value=3.6e+02 Score=22.34 Aligned_cols=48 Identities=27% Similarity=0.320 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHHhhhhhhhhhHH
Q 011054 107 VLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQ 154 (494)
Q Consensus 107 vLLKkLr~~LesLrGRvaGrnKddveeaismVeaLavqltqrE~ELiQ 154 (494)
.++..|-++|+.-+--+...+-|++++.+.--+.+..++.+-|....+
T Consensus 15 ~~~~~L~~ll~~e~~~l~~~d~~~l~~~~~~k~~l~~~l~~le~~r~~ 62 (143)
T PF05130_consen 15 ELLQELLELLEEEREALISGDIDELEELVEEKQELLEELRELEKQRQQ 62 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667777777777777778888888888888888877777655443
No 167
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=27.37 E-value=2.2e+02 Score=25.71 Aligned_cols=59 Identities=31% Similarity=0.348 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCcccHHHHHHHHHHHHhhhhccCCccccccHHHHHHHHHHHHHHh
Q 011054 188 IESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQPSKVMDMEHELRALRIQLAEKS 257 (494)
Q Consensus 188 IE~ArAaV~Rve~al~Eqe~~s~~s~kqd~e~L~~EvqEARRIKmLH~PSKvMDmE~El~~LR~ql~eKs 257 (494)
++.|++.+=.|...+.+- ...+.++.++.++.++.+ ....++.++.++..+..++.+-.
T Consensus 5 l~EA~~lLP~l~~~~~~~-----~~~~~~~~~~~~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~i 63 (120)
T PF09969_consen 5 LEEANALLPLLRPILEEI-----RELKAELEELEERLQELE------DSLEVNGLEAELEELEARLRELI 63 (120)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhcc------chhhHHhHHHHHHHHHHHHHHHH
Confidence 466777777777777654 223445666655555443 33367777777777777776543
No 168
>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.
Probab=27.32 E-value=4.6e+02 Score=23.56 Aligned_cols=25 Identities=32% Similarity=0.539 Sum_probs=11.4
Q ss_pred HHHHHhhHHHHHHHHHHHHhHHHHH
Q 011054 164 DFLKKASEDAKKLVDEERAFARAEI 188 (494)
Q Consensus 164 ~~lKqASeDAkkiV~eeRa~A~aEI 188 (494)
..++.|-++|.+++++....|..++
T Consensus 12 ~I~~eA~~e~~~i~~~~~~~~~~~~ 36 (198)
T PF01991_consen 12 EIIAEAQEEAEKILEEAEEEAEKEI 36 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555554444444444333
No 169
>COG0675 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=27.09 E-value=35 Score=31.81 Aligned_cols=86 Identities=23% Similarity=0.262 Sum_probs=55.2
Q ss_pred ceeeEEEEeecCCCCCCCceEEEEecceeEEee----cC-ceeeehh-hcccccccccccCCcchhhhhhhccccCCceE
Q 011054 382 VEFHVVVTQMNGVDHPSESIHVLHVGKMRIKLC----KG-KMTIAKE-YYSTSMQLCGVRGGGNAAAQALFWQAKKGVSF 455 (494)
Q Consensus 382 tEFNVvi~Q~NG~d~~s~s~hvl~igk~RikL~----KG-~~t~AkE-~YSssMQLCGvRGgg~AAa~AlfWq~rkglS~ 455 (494)
-.|.+.+....+..- ..++|-..-|+++-.|. .| -.++.-. +||| |.|...|. =....|..|+-
T Consensus 259 ~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~yka~~~~~~v~~~~~~~tS--~~C~~cg~---~~~r~~~C~~c---- 328 (364)
T COG0675 259 DLVGVETLVVEDLVK-RRSISDWAFGELRRQLEYKAEWGGIVVKVVPPYYTS--KTCPCCGH---LSGRLFKCPRC---- 328 (364)
T ss_pred ceEeeeeeehhhhhh-cccHhhhhHHHHHHHHHHHHHhCCeEEEECCCCCCc--ccccccCC---ccceeEECCCC----
Confidence 345555555444444 88889888888876542 23 3444443 4543 67777776 22344444444
Q ss_pred EEEeeccccchhHHHHHHhhhccc
Q 011054 456 VLAFESERERNATIMLARRLAFDC 479 (494)
Q Consensus 456 vL~fESeReRNaAImLARrfA~DC 479 (494)
+|+-.||.|||+-|++|+-..+
T Consensus 329 --g~~~~rD~naa~Ni~~~~~~~~ 350 (364)
T COG0675 329 --GFVHDRDVNAALNIARRALGLL 350 (364)
T ss_pred --CCeehhhHHHHHHHHHHhcccC
Confidence 4667899999999999997766
No 170
>PRK10884 SH3 domain-containing protein; Provisional
Probab=26.71 E-value=6.1e+02 Score=24.81 Aligned_cols=77 Identities=17% Similarity=0.220 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccHHHHHHHHHHHHhhhhccCCccccccHHHHHHHHHHHHHHhHHHHHH
Q 011054 184 ARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQPSKVMDMEHELRALRIQLAEKSKCSLLL 263 (494)
Q Consensus 184 A~aEIE~ArAaV~Rve~al~Eqe~~s~~s~kqd~e~L~~EvqEARRIKmLH~PSKvMDmE~El~~LR~ql~eKs~~~v~L 263 (494)
++..+....+-+..+++.|.+...... +...+|.+++.++.-. +-+++.|.+.|++++.+-....-.|
T Consensus 91 ~~~rlp~le~el~~l~~~l~~~~~~~~----~~~~~l~~~~~~~~~~--------~~~L~~~n~~L~~~l~~~~~~~~~l 158 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNNIDNTWN----QRTAEMQQKVAQSDSV--------INGLKEENQKLKNQLIVAQKKVDAA 158 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhh
Q 011054 264 RKELAMSKR 272 (494)
Q Consensus 264 ~KEL~~~kr 272 (494)
.-|++..++
T Consensus 159 ~~~~~~~~~ 167 (206)
T PRK10884 159 NLQLDDKQR 167 (206)
T ss_pred HHHHHHHHH
No 171
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=26.70 E-value=2.5e+02 Score=27.31 Aligned_cols=54 Identities=28% Similarity=0.310 Sum_probs=32.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccHHHHHHHHHHHH
Q 011054 174 KKLVDEERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEAR 228 (494)
Q Consensus 174 kkiV~eeRa~A~aEIE~ArAaV~Rve~al~Eqe~~s~~s~kqd~e~L~~EvqEAR 228 (494)
+.+-.+.|.....+.+..+.++.+-++.+++..+. ...-+..+++|.+|++++.
T Consensus 120 ~e~~~~~~~~~~~~~~~~~~G~~~r~~~i~~a~~~-~~e~~~~l~~l~~ei~~~~ 173 (176)
T PF12999_consen 120 AELGKEYREELEEEEEIYKEGLKIRQELIEEAKKK-REELEKKLEELEKEIQAAK 173 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Confidence 34556677777777777777777666555544332 2223336666777666553
No 172
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=26.65 E-value=6e+02 Score=24.71 Aligned_cols=80 Identities=15% Similarity=0.240 Sum_probs=0.0
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh--hhhcCcccHH
Q 011054 141 LAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHEQM--SRASGKQDFE 218 (494)
Q Consensus 141 LavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eeRa~A~aEIE~ArAaV~Rve~al~Eqe~~--s~~s~kqd~e 218 (494)
+..++.+.|..+.+-+++++.+-.-+++ .+.+-..+++.++.|++.....+.-++..+.. .....+++++
T Consensus 78 ~~~~l~~a~a~l~~~~~~~~~~~~~~~~--------~~~~i~~~~~~~~~a~~~l~~a~~~~~r~~~L~~~g~is~~~~~ 149 (334)
T TIGR00998 78 AELALAKAEANLAALVRQTKQLEITVQQ--------LQAKVESLKIKLEQAREKLLQAELDLRRRVPLFKKGLISREELD 149 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHCCCcCHHHHH
Q ss_pred HHHHHHHHHH
Q 011054 219 ELMKEVQEAR 228 (494)
Q Consensus 219 ~L~~EvqEAR 228 (494)
..+.+++.|+
T Consensus 150 ~a~~~~~~a~ 159 (334)
T TIGR00998 150 HARKALLSAK 159 (334)
T ss_pred HHHHHHHHHH
No 173
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=26.46 E-value=5.6e+02 Score=24.28 Aligned_cols=21 Identities=14% Similarity=0.290 Sum_probs=11.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHH
Q 011054 148 REGELIQEKAEVKKLADFLKK 168 (494)
Q Consensus 148 rE~ELiQeK~EVkKlA~~lKq 168 (494)
.+.++.+.+.+.+++..++++
T Consensus 76 ~~~~~~~~~~~~~r~~~L~~~ 96 (322)
T TIGR01730 76 AEAQLELAQRSFERAERLVKR 96 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHC
Confidence 344455555555555555544
No 174
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=25.86 E-value=1.1e+03 Score=27.61 Aligned_cols=45 Identities=24% Similarity=0.406 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccHHHHHHHHHHHH
Q 011054 184 ARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEAR 228 (494)
Q Consensus 184 A~aEIE~ArAaV~Rve~al~Eqe~~s~~s~kqd~e~L~~EvqEAR 228 (494)
|...+|.|.+--.|+.+.|+++-..+..-..++++.+++|+++.+
T Consensus 434 ~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk 478 (775)
T PF10174_consen 434 ALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELK 478 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568899999999999999988866655555678888888888765
No 175
>cd00336 Ribosomal_L22 Ribosomal protein L22/L17e. L22 (L17 in eukaryotes) is a core protein of the large ribosomal subunit. It is the only ribosomal protein that interacts with all six domains of 23S rRNA, and is one of the proteins important for directing the proper folding and stabilizing the conformation of 23S rRNA. L22 is the largest protein contributor to the surface of the polypeptide exit channel, the tunnel through which the polypeptide product passes. L22 is also one of six proteins located at the putative translocon binding site on the exterior surface of the ribosome.
Probab=25.85 E-value=1.9e+02 Score=24.57 Aligned_cols=27 Identities=37% Similarity=0.436 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHH
Q 011054 109 LKKLRDALESLRGRVAGRNKDDVEEAIAMVEALA 142 (494)
Q Consensus 109 LKkLr~~LesLrGRvaGrnKddveeaismVeaLa 142 (494)
.||+|-++.-+||+ .|++|+.+.+..-
T Consensus 12 ~kK~~~v~~~Irg~-------~v~~A~~~L~~~~ 38 (105)
T cd00336 12 PKKARLVARLIRGM-------SVDEALAQLEFVP 38 (105)
T ss_pred HHHHHHHHHHHcCC-------cHHHHHHHHHhCC
Confidence 58999999999986 5788888877654
No 176
>COG1012 PutA NAD-dependent aldehyde dehydrogenases [Energy production and conversion]
Probab=25.70 E-value=2.8e+02 Score=29.71 Aligned_cols=76 Identities=25% Similarity=0.495 Sum_probs=55.4
Q ss_pred ChhHHHhhhHHHHhHHhhhcchHHHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHHhhhhhhhh-hHHHHHHHHHH
Q 011054 84 GLAAAAKLSEEAKLREAASLEKHVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGE-LIQEKAEVKKL 162 (494)
Q Consensus 84 gl~~AakLs~EaK~reva~Ler~vLLKkLr~~LesLrGRvaGrnKddveeaismVeaLavqltqrE~E-LiQeK~EVkKl 162 (494)
-+.+| +.+-+ +|+....-||.-+|.++.+.|+. ++|++.+.+++ .-|- +.+-+.|+...
T Consensus 41 Av~aA-~~a~~-~W~~~~~~eR~~iL~~~a~~l~~--------~~~ela~~~~~----------e~Gk~i~ea~~ei~~~ 100 (472)
T COG1012 41 AVAAA-RAAFE-AWSRLSAEERAAILRRIADLLEA--------RAEELAALITL----------ETGKPISEARGEIARA 100 (472)
T ss_pred HHHHH-HHHHH-HhhhCCHHHHHHHHHHHHHHHHH--------hHHHHHHHHHH----------HcCCCHHHHHHHHHHH
Confidence 33444 55555 89999999999999999999985 45555544443 2233 55668889999
Q ss_pred HHHHHHhhHHHHHHHHH
Q 011054 163 ADFLKKASEDAKKLVDE 179 (494)
Q Consensus 163 A~~lKqASeDAkkiV~e 179 (494)
+.++.-+.++++++-.+
T Consensus 101 ~~~~~~~a~~~~~~~~~ 117 (472)
T COG1012 101 ADFIRYYAEEARRLEGE 117 (472)
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 99999999999865544
No 177
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=25.70 E-value=4.8e+02 Score=23.21 Aligned_cols=57 Identities=28% Similarity=0.414 Sum_probs=36.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011054 149 EGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHEQMSR 210 (494)
Q Consensus 149 E~ELiQeK~EVkKlA~~lKqASeDAkkiV~eeRa~A~aEIE~ArAaV~Rve~al~Eqe~~s~ 210 (494)
|.||..--..++.|..+=++.++ +..+....+++.++|++.+...+..+++++....
T Consensus 48 E~El~~Ha~~~~~L~~lr~e~~~-----~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le 104 (132)
T PF07926_consen 48 ERELVKHAEDIKELQQLREELQE-----LQQEINELKAEAESAKAELEESEASWEEQKEQLE 104 (132)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 66666666666666554333332 3355666777888888888888887777766543
No 178
>PF01322 Cytochrom_C_2: Cytochrome C'; InterPro: IPR002321 Cytochromes c (cytC) can be defined as electron-transfer proteins having one or several haem c groups, bound to the protein by one or, more generally, two thioether bonds involving sulphydryl groups of cysteine residues. The fifth haem iron ligand is always provided by a histidine residue. CytC possess a wide range of properties and function in a large number of different redox processes. Ambler [] recognised four classes of cytC. Class II includes the high-spin cytC' and a number of low-spin cytochromes, e.g. cyt c-556. The haem-attachment site is close to the C terminus. The cytC' are capable of binding such ligands as CO, NO or CN(-), albeit with rate and equilibrium constants 100 to 1,000,000-fold smaller than other high-spin haemoproteins []. This, coupled with its relatively low redox potential, makes it unlikely that cytC' is a terminal oxidase. Thus cytC' probably functions as an electron transfer protein []. The 3D structures of a number of cytC' have been determined. The molecule usually exists as a dimer, each monomer folding as a four-alpha-helix bundle incorporating a covalently-bound haem group at the core []. The Chromatium vinosum cytC' exhibits dimer dissociation upon ligand binding [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0005746 mitochondrial respiratory chain; PDB: 1BBH_A 2J9B_B 2J8W_A 1JAF_B 3ZTM_A 2XLD_A 2XL6_A 1E86_A 2YLD_A 2YKZ_A ....
Probab=25.65 E-value=4.3e+02 Score=22.63 Aligned_cols=94 Identities=20% Similarity=0.306 Sum_probs=68.1
Q ss_pred hcchHHHHHHHHHHHHHhhcccCCCC---hhhHHHHHHHHHHHHHhhh-------------hhhhhhHHHHHHHHHHHHH
Q 011054 102 SLEKHVLLKKLRDALESLRGRVAGRN---KDDVEEAIAMVEALAVQLT-------------QREGELIQEKAEVKKLADF 165 (494)
Q Consensus 102 ~Ler~vLLKkLr~~LesLrGRvaGrn---KddveeaismVeaLavqlt-------------qrE~ELiQeK~EVkKlA~~ 165 (494)
.=.|+-+.|.+...+..|.+=+-|.. .+.|..+...+..++-.+. .-=.+.-++..+.+.++.-
T Consensus 4 v~~Rq~~m~~~~~~~~~l~~~~~g~~~~d~~~~~~~a~~l~~~a~~~~~~F~~gs~~~~~s~A~~~Iw~~~~~F~~~~~~ 83 (122)
T PF01322_consen 4 VKARQAAMKAIGANMKALGAMLKGEKPFDAAAVAAAADALAALAKSLPDHFPEGSDGGDGSEAKPEIWEDPEDFKQLAQA 83 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSST-SHHHHHHHHHHHHHHHTSGGGGGSTTCSSTTSSSBSTHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHhhhhhhCCCCCCCCccccccHHHHhCHHHHHHHHHH
Confidence 34678899999999999999999984 6778888888887775442 1222355778888888888
Q ss_pred HHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 011054 166 LKKASEDAKKLVDEERAFARAEIESARAAVQRVEES 201 (494)
Q Consensus 166 lKqASeDAkkiV~eeRa~A~aEIE~ArAaV~Rve~a 201 (494)
|..+..+....+... -.+..++++.+|++.
T Consensus 84 ~~~aa~~L~~aa~~~------d~~~~~~a~~~v~~~ 113 (122)
T PF01322_consen 84 FQKAAAALAAAAKSG------DLAAIKAAFGEVGKS 113 (122)
T ss_dssp HHHHHHHHHHHHHHT------SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC------CHHHHHHHHHHHHHH
Confidence 888887776555221 356677777777665
No 179
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=25.58 E-value=9e+02 Score=27.98 Aligned_cols=85 Identities=22% Similarity=0.270 Sum_probs=55.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHH-------HHHhhhhcCcccHHHHHHHHHHHHhhhhc------cCC--cccc----
Q 011054 180 ERAFARAEIESARAAVQRVEESLQE-------HEQMSRASGKQDFEELMKEVQEARRIKML------HQP--SKVM---- 240 (494)
Q Consensus 180 eRa~A~aEIE~ArAaV~Rve~al~E-------qe~~s~~s~kqd~e~L~~EvqEARRIKmL------H~P--SKvM---- 240 (494)
.++--.-|+|+-.+.|..|+.-+.. -+.-.+.. -|.|++++|+.--+-|..= |+- -+.|
T Consensus 304 ~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~--sDYeeIK~ELsiLk~ief~~se~a~~~~~~~~~leslL 381 (629)
T KOG0963|consen 304 LEASLVEEREKHKAQISALEKELKAKISELEELKEKLNSR--SDYEEIKKELSILKAIEFGDSEEANDEDETAKTLESLL 381 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHhhcCCcccccccccccchHHHHH
Confidence 3444445566666666666554433 22222222 4999999999999988864 332 1333
Q ss_pred -----ccHHHHHHHHHHHHHHhHHHHHHHHH
Q 011054 241 -----DMEHELRALRIQLAEKSKCSLLLRKE 266 (494)
Q Consensus 241 -----DmE~El~~LR~ql~eKs~~~v~L~KE 266 (494)
-|++|...||.+.+..+..|.++.+-
T Consensus 382 l~knr~lq~e~a~Lr~~n~~~~~~~~~~~~~ 412 (629)
T KOG0963|consen 382 LEKNRKLQNENASLRVANSGLSGRITELSKK 412 (629)
T ss_pred HHHHhhhhHHHHHHhccccccchhHHHHHhh
Confidence 38999999999999999888777653
No 180
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=25.57 E-value=1.1e+03 Score=27.57 Aligned_cols=155 Identities=28% Similarity=0.365 Sum_probs=81.4
Q ss_pred hHHHHHHHHHHHHHHhcccc-------hhHhHHHhhhChhHHHhhhHH-HHhHHhhhcchH-------HHHHHHHHHHHH
Q 011054 54 MKEVVARETAQLLEQQKRLS-------VRDLANKFEKGLAAAAKLSEE-AKLREAASLEKH-------VLLKKLRDALES 118 (494)
Q Consensus 54 lKEvVakEta~L~~q~kRLS-------VRdLA~KFekgl~~AakLs~E-aK~reva~Ler~-------vLLKkLr~~Les 118 (494)
|-+.+....-+|..-.-||+ ...+..+.|+++.---++-+. -..|+=+.-|+. --++.|+.-+++
T Consensus 404 Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~ 483 (775)
T PF10174_consen 404 LEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLES 483 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666766 455667777777644333332 111111222221 234555555555
Q ss_pred hhcccCCCC------hhhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHH-----HHHHHHHhHHHH
Q 011054 119 LRGRVAGRN------KDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKK-----LVDEERAFARAE 187 (494)
Q Consensus 119 LrGRvaGrn------KddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkk-----iV~eeRa~A~aE 187 (494)
|.+.+.-+. ++++..-.|--+=---.+.+-+.++-+.+.++.||-+-++.+-.+++. .++.+=+--..+
T Consensus 484 LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k~~~~~e~~~r~~~Le~ev~~~~ee 563 (775)
T PF10174_consen 484 LQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLEKLRANAELRDRIQQLEQEVTRYREE 563 (775)
T ss_pred HhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHhhcchHHHHHHHHHHHHHH
Confidence 555544433 122211111111111123444577777778888888877774444432 344444455567
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 011054 188 IESARAAVQRVEESLQEHEQM 208 (494)
Q Consensus 188 IE~ArAaV~Rve~al~Eqe~~ 208 (494)
.+.|++=|.|+-.+|++-++.
T Consensus 564 ~~kaq~EVERLl~~L~~~E~E 584 (775)
T PF10174_consen 564 SEKAQAEVERLLDILREAENE 584 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 777888888887777765544
No 181
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=25.37 E-value=5.7e+02 Score=23.98 Aligned_cols=30 Identities=37% Similarity=0.436 Sum_probs=16.9
Q ss_pred HHHHhhHHHHHHHHHHHHhHHHHHHHHHHH
Q 011054 165 FLKKASEDAKKLVDEERAFARAEIESARAA 194 (494)
Q Consensus 165 ~lKqASeDAkkiV~eeRa~A~aEIE~ArAa 194 (494)
-|.+|...|+.|+++.+..|..+.+.+++.
T Consensus 91 ~L~~Ar~EA~~ii~~A~~ea~~~~~~~~~~ 120 (181)
T PRK13454 91 ALADARAEAQRIVAETRAEIQAELDVAIAK 120 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666555555544443
No 182
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=25.03 E-value=5.1e+02 Score=23.31 Aligned_cols=24 Identities=42% Similarity=0.522 Sum_probs=11.2
Q ss_pred HHHhhHHHHHHHHHHHHhHHHHHH
Q 011054 166 LKKASEDAKKLVDEERAFARAEIE 189 (494)
Q Consensus 166 lKqASeDAkkiV~eeRa~A~aEIE 189 (494)
|.+|...|+.|+++.+..|..+.+
T Consensus 66 l~~a~~ea~~ii~~a~~~a~~~~~ 89 (159)
T PRK13461 66 LKNAKEEGKKIVEEYKSKAENVYE 89 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444555544444444433
No 183
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=25.01 E-value=6.5e+02 Score=24.51 Aligned_cols=15 Identities=7% Similarity=0.200 Sum_probs=8.8
Q ss_pred CCcEEEEeecCCCCC
Q 011054 351 NGQQITLTTTGAVDP 365 (494)
Q Consensus 351 ~g~k~~~~T~GPidp 365 (494)
+|...+|+|+=|++|
T Consensus 175 ~~~~~~v~sa~~l~~ 189 (246)
T TIGR03321 175 SGNPVLVRSAFELPE 189 (246)
T ss_pred CCCceEEEecCCCCH
Confidence 444466666666664
No 184
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=25.01 E-value=76 Score=26.97 Aligned_cols=37 Identities=24% Similarity=0.469 Sum_probs=20.1
Q ss_pred cCceeEEeeCCCCCCCCC-CceeeEEEeccCCCccccc
Q 011054 289 LGSYLRIKPCSNNGPELS-KCSIQWYRVPSEGGKRELI 325 (494)
Q Consensus 289 LGS~L~i~~~~d~~~dlS-kcsiQW~Rv~~~gsk~e~I 325 (494)
.|+...|...-...+.++ +-.|+||+....++..+.|
T Consensus 12 ~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v 49 (115)
T cd05880 12 NGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESV 49 (115)
T ss_pred cCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEE
Confidence 355555543322223333 4579999987666654443
No 185
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=24.96 E-value=9.9e+02 Score=26.63 Aligned_cols=46 Identities=15% Similarity=0.303 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCc--ccHHHHHHHHHHHHh
Q 011054 184 ARAEIESARAAVQRVEESLQEHEQMSRASGK--QDFEELMKEVQEARR 229 (494)
Q Consensus 184 A~aEIE~ArAaV~Rve~al~Eqe~~s~~s~k--qd~e~L~~EvqEARR 229 (494)
...+++.|++-...++..+.+.+........ +++..|..|++-+|-
T Consensus 343 ~~~~~~~a~~~~~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~ 390 (754)
T TIGR01005 343 LLMQADAAQARESQLVSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQ 390 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHH
Confidence 3556666666666666666665544322222 266677766665553
No 186
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=24.77 E-value=6.9e+02 Score=24.76 Aligned_cols=88 Identities=9% Similarity=0.084 Sum_probs=0.0
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcc-cH
Q 011054 139 EALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQ-DF 217 (494)
Q Consensus 139 eaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eeRa~A~aEIE~ArAaV~Rve~al~Eqe~~s~~s~kq-d~ 217 (494)
+..+-.|..-|.-..+-+.....--.-++.|...|..|+++.+..|..+.+...+..+.=-+.+.++-+..-..+++ -+
T Consensus 39 ~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~eA~~~~~~il~~A~~ea~~~~~~a~~~ie~Ek~~a~ 118 (250)
T PRK14474 39 QRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASFMAQAQEAADEQRQHLLNEAREDVATARDEWLEQLEREKQEFF 118 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHH
Q 011054 218 EELMKEVQE 226 (494)
Q Consensus 218 e~L~~EvqE 226 (494)
.+|+++|-.
T Consensus 119 ~~L~~~v~~ 127 (250)
T PRK14474 119 KALQQQTGQ 127 (250)
T ss_pred HHHHHHHHH
No 187
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=24.49 E-value=3.3e+02 Score=22.37 Aligned_cols=45 Identities=33% Similarity=0.420 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccHHHHHHHHHHHH
Q 011054 183 FARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEAR 228 (494)
Q Consensus 183 ~A~aEIE~ArAaV~Rve~al~Eqe~~s~~s~kqd~e~L~~EvqEAR 228 (494)
..+-|+...+++-.-.+.-|++-+.-.+.-. ++|+.|++++.|.|
T Consensus 15 ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~-~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 15 AIQEELTKVKSANLAFESKLQEAEKRNRELE-QEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhh
Confidence 3455677777888888888877766544332 37888888888776
No 188
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=23.80 E-value=5.2e+02 Score=23.00 Aligned_cols=72 Identities=22% Similarity=0.395 Sum_probs=33.6
Q ss_pred hhhhhHHHHHHHHHHH-HHHHHhhHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHhhhhcCcccHHHHHHHHH
Q 011054 148 REGELIQEKAEVKKLA-DFLKKASEDAKKLVDEERAFARAEIESAR-AAVQRVEESLQEHEQMSRASGKQDFEELMKEVQ 225 (494)
Q Consensus 148 rE~ELiQeK~EVkKlA-~~lKqASeDAkkiV~eeRa~A~aEIE~Ar-AaV~Rve~al~Eqe~~s~~s~kqd~e~L~~Evq 225 (494)
++||+.++.+ ++++ .+++.+.+..+..+++-+..|+...+.-. +.-.+|..+|.. .....+.|++.|.+.|.
T Consensus 33 kkGe~~~ee~--k~~~~e~~~~~~e~~~~~~~~~~~~~~~~~~~le~~~~~~v~~~L~~----lg~~tk~ev~~L~~RI~ 106 (118)
T TIGR01837 33 KEGELAEKRG--QKRFDESVDAAREEVKTALEQTRDQVQRNWDKLEKAFDERVEQALNR----LNIPSREEIEALSAKIE 106 (118)
T ss_pred HhccccHHHH--HHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHH----cCCCCHHHHHHHHHHHH
Confidence 5677766533 3333 23444556666666666655543322211 122233333322 22334456666665544
No 189
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.55 E-value=1.2e+03 Score=27.05 Aligned_cols=70 Identities=34% Similarity=0.343 Sum_probs=59.7
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhhH------------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 011054 138 VEALAVQLTQREGELIQEKAEVKKLADFLKKASE------------DAKKLVDEERAFARAEIESARAAVQRVEESLQEH 205 (494)
Q Consensus 138 VeaLavqltqrE~ELiQeK~EVkKlA~~lKqASe------------DAkkiV~eeRa~A~aEIE~ArAaV~Rve~al~Eq 205 (494)
.+-+--.|.-+|.-|-|+|.|.-||-.-||||-+ |-.+=|+.|++.-+-|.-.|+|-|.|.-+.|.|-
T Consensus 375 glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~~ddar~~pe~~d~i~~le~e~~~y~de~~kaqaevdrlLeilkev 454 (654)
T KOG4809|consen 375 GLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNIEDDARMNPEFADQIKQLEKEASYYRDECGKAQAEVDRLLEILKEV 454 (654)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444567888999999999999999999999843 4457789999999999999999999999999886
Q ss_pred HH
Q 011054 206 EQ 207 (494)
Q Consensus 206 e~ 207 (494)
++
T Consensus 455 en 456 (654)
T KOG4809|consen 455 EN 456 (654)
T ss_pred Hh
Confidence 65
No 190
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=23.47 E-value=5.5e+02 Score=26.53 Aligned_cols=73 Identities=15% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh--hhhcCcccHH
Q 011054 141 LAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHEQM--SRASGKQDFE 218 (494)
Q Consensus 141 LavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eeRa~A~aEIE~ArAaV~Rve~al~Eqe~~--s~~s~kqd~e 218 (494)
+..++.|-+.+|.+.+.....+..-++ .++++++.|++.+...+.-++..+.. ....-++|+|
T Consensus 97 ~~~~l~~A~a~l~~a~~~~~~~~~~~~---------------~~~a~l~~a~a~l~~a~~~~~R~~~L~~~g~iS~~~ld 161 (390)
T PRK15136 97 AEQAFEKAKTALANSVRQTHQLMINSK---------------QYQANIELQKTALAQAQSDLNRRVPLGNANLIGREELQ 161 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHH
Q ss_pred HHHHHHHHHH
Q 011054 219 ELMKEVQEAR 228 (494)
Q Consensus 219 ~L~~EvqEAR 228 (494)
..+-+++.|+
T Consensus 162 ~a~~~~~~a~ 171 (390)
T PRK15136 162 HARDAVASAQ 171 (390)
T ss_pred HHHHHHHHHH
No 191
>PRK09098 type III secretion system protein HrpB; Validated
Probab=23.43 E-value=7.3e+02 Score=24.52 Aligned_cols=30 Identities=40% Similarity=0.468 Sum_probs=19.8
Q ss_pred HHHhhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 011054 166 LKKASEDAKKLVDEERAFARAEIESARAAV 195 (494)
Q Consensus 166 lKqASeDAkkiV~eeRa~A~aEIE~ArAaV 195 (494)
|.+|-++|.+|+++.|+.|..=++.|+.-.
T Consensus 45 la~Ar~~A~~Il~~A~~~A~~I~~~A~~e~ 74 (233)
T PRK09098 45 LAAARARAERIVAEARAQAEAILEAARREA 74 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666777777777777766666666543
No 192
>CHL00034 rpl22 ribosomal protein L22
Probab=23.39 E-value=2.1e+02 Score=25.60 Aligned_cols=47 Identities=32% Similarity=0.383 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHH
Q 011054 108 LLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFAR 185 (494)
Q Consensus 108 LLKkLr~~LesLrGRvaGrnKddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eeRa~A~ 185 (494)
=-||+|-++..+||+ .|.+|+...+..- |.|+..-+|+++...+||.
T Consensus 20 SpkK~r~va~~IRG~-------~v~~A~~~L~~~p------------------------kk~a~~i~klL~sA~aNA~ 66 (117)
T CHL00034 20 SAHKARRVIDQIRGR-------SYEEALMILEFMP------------------------YRACYPILKLVYSAAANAS 66 (117)
T ss_pred CHHHHHHHHHHHcCC-------cHHHHHHHHHHCc------------------------HHHHHHHHHHHHHHHHHHH
Confidence 358999999999986 5888998877522 5677777788877777773
No 193
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=23.22 E-value=70 Score=25.19 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=18.2
Q ss_pred HHHHHHHhcccchhHhHHHhhhChh
Q 011054 62 TAQLLEQQKRLSVRDLANKFEKGLA 86 (494)
Q Consensus 62 ta~L~~q~kRLSVRdLA~KFekgl~ 86 (494)
--+.+.++.+.|+.|||..|.--..
T Consensus 5 i~~~l~~~~~~S~~eLa~~~~~s~~ 29 (69)
T PF09012_consen 5 IRDYLRERGRVSLAELAREFGISPE 29 (69)
T ss_dssp HHHHHHHS-SEEHHHHHHHTT--HH
T ss_pred HHHHHHHcCCcCHHHHHHHHCcCHH
Confidence 3467889999999999999975444
No 194
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=23.09 E-value=5.7e+02 Score=25.96 Aligned_cols=20 Identities=35% Similarity=0.454 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 011054 183 FARAEIESARAAVQRVEESL 202 (494)
Q Consensus 183 ~A~aEIE~ArAaV~Rve~al 202 (494)
.|++++++|++.+...+..|
T Consensus 150 ~a~a~~~~a~a~l~~a~~~l 169 (385)
T PRK09578 150 QAKAAVASAKAELARAQLQL 169 (385)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 45556666666555544444
No 195
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=23.05 E-value=6.8e+02 Score=24.26 Aligned_cols=72 Identities=22% Similarity=0.301 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH-hhHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHhhhhcCcccHHHHHHHHHHHHh
Q 011054 158 EVKKLADFLKK-ASEDAKKLVDEERAFARAEIESARAAVQ-RVEESLQEHEQMSRASGKQDFEELMKEVQEARR 229 (494)
Q Consensus 158 EVkKlA~~lKq-ASeDAkkiV~eeRa~A~aEIE~ArAaV~-Rve~al~Eqe~~s~~s~kqd~e~L~~EvqEARR 229 (494)
++.++.+++.+ |-+.|++|.++.+..|..+.+.|.+..+ ..+.++..-+...+....+-+....-|..-.++
T Consensus 3 ~~e~~i~~I~~~a~eeak~I~~eA~~eae~i~~ea~~~~~~~~~~~~~~~~~ea~~~~~~iis~A~le~r~~~L 76 (194)
T COG1390 3 ELEKLIKKILREAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERERQRIISSALLEARRKLL 76 (194)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 196
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=22.99 E-value=1.1e+03 Score=26.24 Aligned_cols=47 Identities=17% Similarity=0.254 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-CcccHHHHHHHHHHHHh
Q 011054 183 FARAEIESARAAVQRVEESLQEHEQMSRAS-GKQDFEELMKEVQEARR 229 (494)
Q Consensus 183 ~A~aEIE~ArAaV~Rve~al~Eqe~~s~~s-~kqd~e~L~~EvqEARR 229 (494)
....++...+.-...++.-|.+-++....+ ..+++..|.++..++.+
T Consensus 388 ~~~~~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~ 435 (650)
T TIGR03185 388 ELQDAKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQN 435 (650)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 345666677777777777777777665554 33677777777776653
No 197
>PRK05412 putative nucleotide-binding protein; Reviewed
Probab=22.95 E-value=51 Score=31.67 Aligned_cols=18 Identities=39% Similarity=0.850 Sum_probs=16.8
Q ss_pred ccCCCChhhHHHHHHHHH
Q 011054 122 RVAGRNKDDVEEAIAMVE 139 (494)
Q Consensus 122 RvaGrnKddveeaismVe 139 (494)
||.|+.+||+-++|+++-
T Consensus 129 RVtgKkrDDLQ~viallk 146 (161)
T PRK05412 129 RVTGKKRDDLQAVIALLR 146 (161)
T ss_pred EEecCCHhHHHHHHHHHH
Confidence 999999999999999874
No 198
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=22.93 E-value=3e+02 Score=28.24 Aligned_cols=62 Identities=23% Similarity=0.287 Sum_probs=49.1
Q ss_pred HHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccHHHHHHHHHHHH
Q 011054 164 DFLKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEAR 228 (494)
Q Consensus 164 ~~lKqASeDAkkiV~eeRa~A~aEIE~ArAaV~Rve~al~Eqe~~s~~s~kqd~e~L~~EvqEAR 228 (494)
++||.|-|-+| ++++-..-+|++|.--..+|.++.-|++-|.....+--|--+.|+ -+.+|+
T Consensus 61 ~llkla~eq~k--~e~~m~~Lea~VEkrD~~IQqLqk~LK~aE~iLtta~fqA~qKLk-si~~A~ 122 (272)
T KOG4552|consen 61 TLLKLAPEQQK--REQLMRTLEAHVEKRDEVIQQLQKNLKSAEVILTTACFQANQKLK-SIKEAE 122 (272)
T ss_pred HHHHHhHhHHH--HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh
Confidence 46888988887 477777889999999999999999999999998777666555553 455665
No 199
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=22.90 E-value=2.1e+02 Score=23.53 Aligned_cols=36 Identities=17% Similarity=0.354 Sum_probs=21.4
Q ss_pred ccCceeEEeeCCCCCCCCCCceeeEEEeccCCCccccccc
Q 011054 288 ALGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELISG 327 (494)
Q Consensus 288 ~LGS~L~i~~~~d~~~dlSkcsiQW~Rv~~~gsk~e~IsG 327 (494)
..|+...|...... +.-.+.|||..+...-.-|+..
T Consensus 11 ~~G~~v~l~C~~~~----~~~~v~Wykq~~g~~~~~l~~~ 46 (110)
T cd05899 11 GRGQSVTLRCSQTS----GHDNMYWYRQDPGKGLQLLFYS 46 (110)
T ss_pred cCCCcEEEEEEECC----CCCEEEEEEECCCCCcEEEEEE
Confidence 34666666654433 3457999999985433333333
No 200
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=22.83 E-value=7.6e+02 Score=24.50 Aligned_cols=44 Identities=30% Similarity=0.336 Sum_probs=31.2
Q ss_pred cHHHHHHHHHHHHhhhhccCCccccccHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhh
Q 011054 216 DFEELMKEVQEARRIKMLHQPSKVMDMEHELRALRIQLAEKSKCSLLLRKELAMSKRIE 274 (494)
Q Consensus 216 d~e~L~~EvqEARRIKmLH~PSKvMDmE~El~~LR~ql~eKs~~~v~L~KEL~~~kr~~ 274 (494)
+-+.|..++.++ +-+|..|+.....|.....+|+++|...+...
T Consensus 76 Ek~~Le~e~~e~---------------~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~ 119 (246)
T PF00769_consen 76 EKEQLEQELREA---------------EAEIARLEEESERKEEEAEELQEELEEAREDE 119 (246)
T ss_dssp -----HHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566666665 45788899999999999999999998766644
No 201
>KOG4557 consensus Origin recognition complex, subunit 6 [Replication, recombination and repair]
Probab=22.64 E-value=94 Score=31.78 Aligned_cols=46 Identities=30% Similarity=0.501 Sum_probs=33.9
Q ss_pred HHHHHHhcccchhHhHHHhhhChhHHHhhhHHHHhHHhhhcchHHHHHHHHHHHHHhhcccCCCChhh
Q 011054 63 AQLLEQQKRLSVRDLANKFEKGLAAAAKLSEEAKLREAASLEKHVLLKKLRDALESLRGRVAGRNKDD 130 (494)
Q Consensus 63 a~L~~q~kRLSVRdLA~KFekgl~~AakLs~EaK~reva~Ler~vLLKkLr~~LesLrGRvaGrnKdd 130 (494)
..|++...-++|||||-+| |+.-+++-+. .+|.|.+||++---.-+
T Consensus 85 e~llgln~~~~VrdlaVQf--gc~evi~~a~--------------------~vl~syk~~lpaT~~~~ 130 (262)
T KOG4557|consen 85 ENLLGLNIKLNVRDLAVQF--GCVEVIKSAQ--------------------NVLSSYKERLPATRRAN 130 (262)
T ss_pred HHHhcchhhcCHHHHHHHH--hHHHHHHHHH--------------------HHHHHHHhcCchhhhcC
Confidence 4688999999999999999 6665555444 47888899876544333
No 202
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=22.59 E-value=1.4e+03 Score=27.46 Aligned_cols=181 Identities=26% Similarity=0.307 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHhcccchhHhHHHhhhChh---HHHhhhHHHHhH---H-hhhcchHHHHHHHH-HHHHHhhcccCCCCh
Q 011054 57 VVARETAQLLEQQKRLSVRDLANKFEKGLA---AAAKLSEEAKLR---E-AASLEKHVLLKKLR-DALESLRGRVAGRNK 128 (494)
Q Consensus 57 vVakEta~L~~q~kRLSVRdLA~KFekgl~---~AakLs~EaK~r---e-va~Ler~vLLKkLr-~~LesLrGRvaGrnK 128 (494)
|++-|.--|-.|+-=.|++|+-.|.|..|+ +....-+| |.+ + ...+|.+ |=.-+| ..|.++-.-.+-||+
T Consensus 72 itt~e~rflnaqre~t~~~d~ndklE~~Lankda~lrq~ee-kn~slqerLelaE~~-l~qs~rae~lpeveael~qr~~ 149 (916)
T KOG0249|consen 72 ITTLEKRFLNAQRESTSIHDLNDKLENELANKDADLRQNEE-KNRSLQERLELAEPK-LQQSLRAETLPEVEAELAQRNA 149 (916)
T ss_pred cchHHHHHHhccCCCCCcccchHHHHHHHhCcchhhchhHH-hhhhhhHHHHHhhHh-hHhHHhhhhhhhhHHHHHHHHH
Confidence 667777888888999999999999999998 44444333 322 2 2222222 222222 112222222222222
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHH----------HHHHhHHHHHHHHHHHHHHH
Q 011054 129 DDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVD----------EERAFARAEIESARAAVQRV 198 (494)
Q Consensus 129 ddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~----------eeRa~A~aEIE~ArAaV~Rv 198 (494)
+----=.-|+++ .--+-+.|.++-.+-+|+-.+-..++.--|-++++++ .||..|.-.++.--.-+.-+
T Consensus 150 al~~aee~~~~~-eer~~kl~~~~qe~naeL~rarqreemneeh~~rlsdtvdErlqlhlkermaAle~kn~L~~e~~s~ 228 (916)
T KOG0249|consen 150 ALTKAEEHSGNI-EERTRKLEEQLEELNAELQRARQREKMNEEHNKRLSDTVDERLQLHLKERMAALEDKNRLEQELESV 228 (916)
T ss_pred HHHHHHHhhccH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111000001110 0112345555555556666666666666666666654 23333333332221111111
Q ss_pred HHHHHHHHHhhhhcCcccHHHHHHHHHHHHhhhhccCCcccccc
Q 011054 199 EESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQPSKVMDM 242 (494)
Q Consensus 199 e~al~Eqe~~s~~s~kqd~e~L~~EvqEARRIKmLH~PSKvMDm 242 (494)
.+-|.+-.+.-. .-..|.|.|+.|+..-|| ..+|++++.=|-
T Consensus 229 kk~l~~~~~~k~-rl~~d~E~Lr~e~~qL~~-~~~~~~~~mrd~ 270 (916)
T KOG0249|consen 229 KKQLEEMRHDKD-KLRTDIEDLRGELDQLRR-SSLEKEQELRDH 270 (916)
T ss_pred HHHHHHHHHHHH-HHhhhHHHHHHHHHHHHH-HHHhhhhhhcch
Confidence 111111111110 011266677777776666 777777665443
No 203
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=22.16 E-value=6.2e+02 Score=26.00 Aligned_cols=19 Identities=11% Similarity=0.125 Sum_probs=10.2
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 011054 150 GELIQEKAEVKKLADFLKK 168 (494)
Q Consensus 150 ~ELiQeK~EVkKlA~~lKq 168 (494)
.+|.+.+.+.++.-+++++
T Consensus 117 a~l~~a~~~~~R~~~L~~~ 135 (397)
T PRK15030 117 AAANIAQLTVNRYQKLLGT 135 (397)
T ss_pred HHHHHHHHHHHHHHHHHHC
Confidence 3444455555665555554
No 204
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=22.09 E-value=9.2e+02 Score=27.39 Aligned_cols=24 Identities=46% Similarity=0.537 Sum_probs=19.9
Q ss_pred hhccCCccccccH----HHHHHHHHHHH
Q 011054 231 KMLHQPSKVMDME----HELRALRIQLA 254 (494)
Q Consensus 231 KmLH~PSKvMDmE----~El~~LR~ql~ 254 (494)
|.|..|||-+|=. .||+.||+|+.
T Consensus 618 kRl~~~sks~~~~~~~~d~i~~~~~~l~ 645 (668)
T PF04388_consen 618 KRLPLPSKSYDTHFGPEDEIDTLRSQLL 645 (668)
T ss_pred hhcccccccccCCCCcHHHHHHHHHHHH
Confidence 4688999999832 69999999987
No 205
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=21.77 E-value=7.9e+02 Score=27.52 Aligned_cols=47 Identities=26% Similarity=0.287 Sum_probs=36.4
Q ss_pred hhcCcccHHHHHHHHHHHHhhhhccCCccccccHHHHHHHHHHHHHHhHHHHHHHHHH
Q 011054 210 RASGKQDFEELMKEVQEARRIKMLHQPSKVMDMEHELRALRIQLAEKSKCSLLLRKEL 267 (494)
Q Consensus 210 ~~s~kqd~e~L~~EvqEARRIKmLH~PSKvMDmE~El~~LR~ql~eKs~~~v~L~KEL 267 (494)
+.|-.+|+|.|++.-+|- +-....||+.|-.|+++|..+.-+|-.-|
T Consensus 405 sqSvnsdveaLRrQylee-----------lqsvqRELeVLSEQYSQKCLEnahLaqal 451 (593)
T KOG4807|consen 405 SQSVNSDVEALRRQYLEE-----------LQSVQRELEVLSEQYSQKCLENAHLAQAL 451 (593)
T ss_pred hhccccChHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 447788999999876652 33456799999999999998888876544
No 206
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=21.75 E-value=6e+02 Score=22.97 Aligned_cols=50 Identities=16% Similarity=0.212 Sum_probs=20.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 011054 147 QREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEIESARAAVQ 196 (494)
Q Consensus 147 qrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eeRa~A~aEIE~ArAaV~ 196 (494)
+|+......-.+..+.-.=......+++....+.|..|..-|+.|++...
T Consensus 39 ~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~~~a~ 88 (164)
T PRK14473 39 ERTRRIEESLRDAEKVREQLANAKRDYEAELAKARQEAAKIVAQAQERAR 88 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443333333333333333344444444444444444444444433
No 207
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=21.71 E-value=1e+02 Score=24.80 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=18.2
Q ss_pred cccHHHHHHHHHHHHHHhHHHH
Q 011054 240 MDMEHELRALRIQLAEKSKCSL 261 (494)
Q Consensus 240 MDmE~El~~LR~ql~eKs~~~v 261 (494)
.+||.||+.||.....|-.-.+
T Consensus 22 ~~ME~Eieelr~RY~~KRqPIl 43 (49)
T PF11629_consen 22 PEMEQEIEELRQRYQAKRQPIL 43 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccHH
Confidence 5799999999999998865443
No 208
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=21.66 E-value=9e+02 Score=24.94 Aligned_cols=24 Identities=21% Similarity=0.216 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Q 011054 244 HELRALRIQLAEKSKCSLLLRKEL 267 (494)
Q Consensus 244 ~El~~LR~ql~eKs~~~v~L~KEL 267 (494)
.++..++.++.+--.....++.+|
T Consensus 227 ~~~~~~~~~l~~~~~~l~~~~~~l 250 (421)
T TIGR03794 227 KELETVEARIKEARYEIEELENKL 250 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777766665555556555
No 209
>PRK04424 fatty acid biosynthesis transcriptional regulator; Provisional
Probab=21.58 E-value=1.9e+02 Score=27.12 Aligned_cols=49 Identities=18% Similarity=0.276 Sum_probs=40.4
Q ss_pred HHHHHHHHHhcccchhHhHHHhhhChhHHHhhhHHHHhHHhhhcchHHHHHHHHHHH
Q 011054 60 RETAQLLEQQKRLSVRDLANKFEKGLAAAAKLSEEAKLREAASLEKHVLLKKLRDAL 116 (494)
Q Consensus 60 kEta~L~~q~kRLSVRdLA~KFekgl~~AakLs~EaK~reva~Ler~vLLKkLr~~L 116 (494)
++-.+++.++.++||.|||..|. .|++-=.|++..|+.+-++.+.+.+-
T Consensus 10 ~~Il~~l~~~~~~~~~~La~~~~--------vS~~TiRRDl~~L~~~g~~~r~~~~~ 58 (185)
T PRK04424 10 KALQELIEENPFITDEELAEKFG--------VSIQTIRLDRMELGIPELRERIKHVA 58 (185)
T ss_pred HHHHHHHHHCCCEEHHHHHHHHC--------cCHHHHHHHHHHHhcchHHHHHHHHH
Confidence 44567889999999999999986 56666678999999999999888753
No 210
>PF03835 Rad4: Rad4 transglutaminase-like domain; InterPro: IPR018325 RAD4/Xp-C proteins contain an ancient transglutaminase fold that is also found in peptide-N-glycanases (PNGases), which remove glycans from glycoproteins during their degradation. The PNGases retain the catalytic triad that is typical of this fold and are predicted to have a reaction mechanism similar to that involved in transglutamination. In contrast, the RAD4/Xp-C proteins are predicted to be inactive and are likely to only possess the interaction function in DNA repair []. ; GO: 0003684 damaged DNA binding, 0006289 nucleotide-excision repair, 0005634 nucleus; PDB: 2QSG_A 2QSF_A 2QSH_A 1X3W_A 1X3Z_A 3ESW_A.
Probab=21.52 E-value=37 Score=30.26 Aligned_cols=33 Identities=27% Similarity=0.345 Sum_probs=20.9
Q ss_pred hccccCCceEEEEeeccccchhHHHHHHhhhcc-cce
Q 011054 446 FWQAKKGVSFVLAFESERERNATIMLARRLAFD-CNI 481 (494)
Q Consensus 446 fWq~rkglS~vL~fESeReRNaAImLARrfA~D-CNv 481 (494)
+-..++.++||+||++. +.+-=..+||+.+ +|.
T Consensus 69 ~~~~~~~~~YViA~d~~---~~~kDVT~RY~~~~~~~ 102 (145)
T PF03835_consen 69 EENANNPMSYVIAFDND---GYAKDVTRRYASNYWNS 102 (145)
T ss_dssp CCCCS--B-EEEEE-CT---TEEEE-HHHH-T-TCCC
T ss_pred hhccCCceEEEEEEeCC---CCEEEchHhhccccccc
Confidence 55567789999999864 7888899999998 654
No 211
>cd04276 ZnMc_MMP_like_2 Zinc-dependent metalloprotease; MMP_like sub-family 2. A group of bacterial metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=21.51 E-value=1.4e+02 Score=28.81 Aligned_cols=48 Identities=25% Similarity=0.513 Sum_probs=34.4
Q ss_pred eEEeeCCCCCCCCCCceeeEEEeccCCCccccccccccccccCCCCcc--cceeeeeeecC
Q 011054 293 LRIKPCSNNGPELSKCSIQWYRVPSEGGKRELISGATKSVYAPEPFDV--GRILQAEITYN 351 (494)
Q Consensus 293 L~i~~~~d~~~dlSkcsiQW~Rv~~~gsk~e~IsGAtk~~YAPEP~DV--Gr~LqadI~~~ 351 (494)
.+..|..+.+.|+.-.+|+|. ++. .|+. .|+|-+.|- |.+|.++|..+
T Consensus 48 v~~~p~~~~~~Diry~~ir~~--~~~-------~~~~--~~gps~~dPrTGeIl~a~V~l~ 97 (197)
T cd04276 48 VKVLPDDADPGDIRYNVIRWI--HSP-------NGGW--AYGPSVVDPRTGEILKADVILY 97 (197)
T ss_pred EEeCCCCcCcccceEEEEEEE--ecC-------CCcc--eecccccCCCCCCeEEEEEEeC
Confidence 344455555679999999997 221 2222 689999997 99999999854
No 212
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=21.40 E-value=6.3e+02 Score=24.01 Aligned_cols=64 Identities=13% Similarity=0.219 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccHHHHHHHHHH
Q 011054 160 KKLADFLKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQE 226 (494)
Q Consensus 160 kKlA~~lKqASeDAkkiV~eeRa~A~aEIE~ArAaV~Rve~al~Eqe~~s~~s~kqd~e~L~~EvqE 226 (494)
.+....+..|-+.|.+|+++.++.|..-++.|+.-..+..+....--. ...++-+..++++|.+
T Consensus 22 ~eA~~Ii~eA~~eAe~Ii~eA~~eAe~i~~kAe~ea~~~~~~~~saa~---l~~r~~ll~~k~~i~~ 85 (198)
T PRK01558 22 RLANEIILEAKEEAEEIIAKAEEEAKELKAKAEKEANDYKRHALEASR---QAGRDLLISFEKSIKS 85 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
No 213
>smart00340 HALZ homeobox associated leucin zipper.
Probab=21.37 E-value=72 Score=25.18 Aligned_cols=25 Identities=40% Similarity=0.541 Sum_probs=18.5
Q ss_pred cHHHHHHHHHHHHhhhhccCCcccccc
Q 011054 216 DFEELMKEVQEARRIKMLHQPSKVMDM 242 (494)
Q Consensus 216 d~e~L~~EvqEARRIKmLH~PSKvMDm 242 (494)
|--.|.+||||-|++|. .|.-.|.|
T Consensus 20 eNrRL~ke~~eLralk~--~~~~~m~~ 44 (44)
T smart00340 20 ENRRLQKEVQELRALKL--SPPLYMQH 44 (44)
T ss_pred HHHHHHHHHHHHHhccc--CCcccccC
Confidence 34568999999999997 44446654
No 214
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.26 E-value=1.9e+02 Score=32.04 Aligned_cols=176 Identities=20% Similarity=0.248 Sum_probs=107.0
Q ss_pred HHHHHH-hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh---hhhcCcc-c-HH----HHHHHHHHHHhhhh
Q 011054 163 ADFLKK-ASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHEQM---SRASGKQ-D-FE----ELMKEVQEARRIKM 232 (494)
Q Consensus 163 A~~lKq-ASeDAkkiV~eeRa~A~aEIE~ArAaV~Rve~al~Eqe~~---s~~s~kq-d-~e----~L~~EvqEARRIKm 232 (494)
+|+|-. .+--|++||+--...++-.|+.-.-+|.-..--.+=++-+ |-.+|.+ | +| +|-.+--.-|||+|
T Consensus 73 ~nyf~~CS~h~A~~I~~~R~~~~r~q~~~l~~~~~n~~~~vkf~~df~~~s~~~Gd~VeIvE~~~eeme~~f~a~hr~~~ 152 (514)
T KOG3130|consen 73 DNYFAKCSAHQAVGIVEHRKEHVRKQIDDLKKVMKNFESRVKFTEDFQKMSDAAGDIVEIVEEIKEEMEFEFKAKHRIAH 152 (514)
T ss_pred cchHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcccHhhccCCCCCeehhHHhhhhHHHHHHHHHHHhhh
Confidence 566655 4567999999999999999999988887777666655544 4445533 1 22 23333445588888
Q ss_pred ccCC-cccc----------ccHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhcccCCceee--ccccccCceeEEeeCC
Q 011054 233 LHQP-SKVM----------DMEHELRALRIQLAEKSKCSLLLRKELAMSKRIEEKLSDSYEL--DGSEALGSYLRIKPCS 299 (494)
Q Consensus 233 LH~P-SKvM----------DmE~El~~LR~ql~eKs~~~v~L~KEL~~~kr~~en~~~~yeL--~G~e~LGS~L~i~~~~ 299 (494)
.-+- -+.= ||.++.--+|..+.|+-..-+.=|.|| ..++.|.++.+ +|.+.||+-+-.--++
T Consensus 153 ~~~~~p~~~diI~~~~~~~d~~~~dvl~~d~ele~~l~d~~~qEel-----~~~~~skP~~v~~e~ed~l~k~eE~Ee~n 227 (514)
T KOG3130|consen 153 KPHSKPKTSDIIFEADIANDVKSKDVLLADKELEARLEDLERQEEL-----LGELDSKPDTVIAEGEDTLSKEEEKEERN 227 (514)
T ss_pred ccccccchhhHHHHHHhhcchhhhhccCchHHHHHHHHHHhhcccc-----cccCCCCchhhhccchhhhHHHHHHHHhh
Confidence 7542 1222 333443334444444332222222222 33456666665 7999999999888887
Q ss_pred CCCCCCCCceeeEEEeccCCCccccccccccccccCCCCcccceeeeeeecCCcEEE
Q 011054 300 NNGPELSKCSIQWYRVPSEGGKRELISGATKSVYAPEPFDVGRILQAEITYNGQQIT 356 (494)
Q Consensus 300 d~~~dlSkcsiQW~Rv~~~gsk~e~IsGAtk~~YAPEP~DVGr~LqadI~~~g~k~~ 356 (494)
.+++.--|-. +|-...+.+|++- +||---|.+|-.-+.||+-..
T Consensus 228 t~~~~~~k~t--------d~~~~~l~~~~~~-----tp~s~~r~~~~n~sv~~~ss~ 271 (514)
T KOG3130|consen 228 TNVNAMHKVT--------DSHTPCLKDVASS-----TPFSGQRNSQLNCSVNGSSSY 271 (514)
T ss_pred ccchhhhhhh--------cccchHhhcCCCc-----CcchhhhhhcccccccCCCCc
Confidence 6666655543 3566677777763 577777777766556665433
No 215
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=20.96 E-value=7.2e+02 Score=27.26 Aligned_cols=101 Identities=24% Similarity=0.387 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhhcccCCC--ChhhHHHHHHHHHHHHHhhhhhhhhhHHHHHHH-HHHHHHHHHhhHHHHHHHHHHHHhHH
Q 011054 109 LKKLRDALESLRGRVAGR--NKDDVEEAIAMVEALAVQLTQREGELIQEKAEV-KKLADFLKKASEDAKKLVDEERAFAR 185 (494)
Q Consensus 109 LKkLr~~LesLrGRvaGr--nKddveeaismVeaLavqltqrE~ELiQeK~EV-kKlA~~lKqASeDAkkiV~eeRa~A~ 185 (494)
+|.||.-.+.++-.+.-| ...+|++.+++=+.. .++.+.=.+|..++-++ +.++.-+++--+|+-.+..+-+.. .
T Consensus 4 ~k~ir~n~d~v~~~l~~r~~~~~~~~~~~~ld~~~-r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~~~~~l~~e~~~l-~ 81 (429)
T COG0172 4 LKLIRENPDAVREKLKKRGGDALDVDKLLELDEER-RKLLRELEELQAERNELSKEIGRALKRGEDDAEELIAEVKEL-K 81 (429)
T ss_pred HHHhhhCHHHHHHHHhhcCCchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHH-H
Confidence 556666666666555555 466777777764443 44444444444444443 334434444344566666554443 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011054 186 AEIESARAAVQRVEESLQEHEQMSRA 211 (494)
Q Consensus 186 aEIE~ArAaV~Rve~al~Eqe~~s~~ 211 (494)
.+|+.+.+....++..+++--....+
T Consensus 82 ~~l~~~e~~~~~~~~~l~~~ll~ipN 107 (429)
T COG0172 82 EKLKELEAALDELEAELDTLLLTIPN 107 (429)
T ss_pred HHHHhccHHHHHHHHHHHHHHHhCCC
Confidence 46666666666666666554444333
No 216
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=20.95 E-value=6.5e+02 Score=23.06 Aligned_cols=15 Identities=27% Similarity=0.443 Sum_probs=7.3
Q ss_pred HHHHHHHHHHhhccc
Q 011054 109 LKKLRDALESLRGRV 123 (494)
Q Consensus 109 LKkLr~~LesLrGRv 123 (494)
.+.+...|+.=+.++
T Consensus 32 ~~pi~~~le~R~~~I 46 (167)
T PRK14475 32 PKALAGALDAYAAKI 46 (167)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555544443
No 217
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=20.94 E-value=8.3e+02 Score=24.28 Aligned_cols=81 Identities=28% Similarity=0.355 Sum_probs=38.8
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011054 129 DDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHEQM 208 (494)
Q Consensus 129 ddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eeRa~A~aEIE~ArAaV~Rve~al~Eqe~~ 208 (494)
..+.++-.+|+.|-.++++=|..+.+=++...-+.. ..++.-|..=|++--.+.-. .+|=.+..|+++-.++-+..
T Consensus 106 ~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~a--r~~~akA~~~v~~~~~~~s~--~sa~~~fer~e~kiee~ea~ 181 (225)
T COG1842 106 AELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKA--RKAAAKAQEKVNRSLGGGSS--SSAMAAFERMEEKIEEREAR 181 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCCc--hhhHHHHHHHHHHHHHHHHH
Confidence 345555566666665555555444433332222211 11222333334433334333 56666666776666666655
Q ss_pred hhhcC
Q 011054 209 SRASG 213 (494)
Q Consensus 209 s~~s~ 213 (494)
....+
T Consensus 182 a~~~~ 186 (225)
T COG1842 182 AEAAA 186 (225)
T ss_pred HHHhH
Confidence 44443
No 218
>PF10455 BAR_2: Bin/amphiphysin/Rvs domain for vesicular trafficking; InterPro: IPR018859 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. This entry identifies several fungal BAR domain proteins, such as Gvp36, that are not found by IPR004148 from INTERPRO [].
Probab=20.91 E-value=8.1e+02 Score=25.46 Aligned_cols=95 Identities=21% Similarity=0.231 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHH-----HHHHHHHHHHHHHhhhhcCcccHHHHHHHHHHHH---
Q 011054 157 AEVKKLADFLKKASEDAKKLVDEERAFARAEIESARAA-----VQRVEESLQEHEQMSRASGKQDFEELMKEVQEAR--- 228 (494)
Q Consensus 157 ~EVkKlA~~lKqASeDAkkiV~eeRa~A~aEIE~ArAa-----V~Rve~al~Eqe~~s~~s~kqd~e~L~~EvqEAR--- 228 (494)
.+...|++.|++=| .+..+|..||.. +.++-.-|++- -+..-+....+|+.|+.+|
T Consensus 145 ~~~~~L~~aL~~~S------------~~~~~I~~aRL~qD~~I~~~Fn~~l~~~----Ln~~~~~a~k~RkkV~~sRL~~ 208 (289)
T PF10455_consen 145 EDEDPLSKALLKYS------------SAYEKIAQARLEQDQLIQKEFNKKLQTT----LNTDFKKANKARKKVENSRLQF 208 (289)
T ss_pred CcccHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777666644 344555555543 33333333321 1112235667788888777
Q ss_pred -----hhhhccCCccccccHHHHHHHHHHHHHHhHHHHHHHHHH
Q 011054 229 -----RIKMLHQPSKVMDMEHELRALRIQLAEKSKCSLLLRKEL 267 (494)
Q Consensus 229 -----RIKmLH~PSKvMDmE~El~~LR~ql~eKs~~~v~L~KEL 267 (494)
.+|..-.|.|-=....|++.+=++|...+.+.+.+.|++
T Consensus 209 D~~R~~~k~~~~pekee~~r~~lE~aEDeFv~aTeeAv~~Mk~v 252 (289)
T PF10455_consen 209 DAARANLKNKAKPEKEEQLRVELEQAEDEFVSATEEAVEVMKEV 252 (289)
T ss_pred HHHHHHhcccCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445888877777889999999999999999998887
No 219
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=20.75 E-value=6.7e+02 Score=23.13 Aligned_cols=77 Identities=26% Similarity=0.428 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHH
Q 011054 106 HVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFAR 185 (494)
Q Consensus 106 ~vLLKkLr~~LesLrGRvaGrnKddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eeRa~A~ 185 (494)
..+.|.+..+|+.=.-+++ +++++|=..-+=....+.+-|.+|.+-+ .+-+....+|-.+|+.+.++.+..|.
T Consensus 25 ~~~~~pi~~~l~~R~~~I~----~~l~~A~~~~~ea~~~~~~~~~~l~~Ar---~~a~~Ii~~A~~~a~~~~~e~~~~a~ 97 (161)
T COG0711 25 KFVWKPILKALDERQAKIA----DDLAEAERLKEEAQALLAEYEQELEEAR---EQASEIIEQAKKEAEQIAEEIKAEAE 97 (161)
T ss_pred HHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677777776555443 4444444443333333444444444444 33444556666777777776666666
Q ss_pred HHHH
Q 011054 186 AEIE 189 (494)
Q Consensus 186 aEIE 189 (494)
.|.+
T Consensus 98 ~e~~ 101 (161)
T COG0711 98 EELE 101 (161)
T ss_pred HHHH
Confidence 5544
No 220
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=20.72 E-value=6.7e+02 Score=23.13 Aligned_cols=48 Identities=21% Similarity=0.313 Sum_probs=23.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHH
Q 011054 147 QREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEIESARAA 194 (494)
Q Consensus 147 qrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eeRa~A~aEIE~ArAa 194 (494)
.|....-..-.+-+++-.=..++-++++.-..+.|..|..=|++|+..
T Consensus 37 ~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~l~~Ar~~a~~Ii~~A~~~ 84 (161)
T COG0711 37 ERQAKIADDLAEAERLKEEAQALLAEYEQELEEAREQASEIIEQAKKE 84 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444445555555555555555555555443
No 221
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=20.71 E-value=67 Score=27.90 Aligned_cols=17 Identities=35% Similarity=0.468 Sum_probs=13.9
Q ss_pred CcccHHHHHHHHHHHHh
Q 011054 213 GKQDFEELMKEVQEARR 229 (494)
Q Consensus 213 ~kqd~e~L~~EvqEARR 229 (494)
-++.-+||++||+|||+
T Consensus 66 cpeA~~eL~~eI~eAK~ 82 (91)
T PF08285_consen 66 CPEAAKELQKEIKEAKA 82 (91)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 34577899999999985
No 222
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=20.63 E-value=9.2e+02 Score=24.68 Aligned_cols=8 Identities=13% Similarity=0.355 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 011054 246 LRALRIQL 253 (494)
Q Consensus 246 l~~LR~ql 253 (494)
+..|..++
T Consensus 344 ~~~L~r~~ 351 (444)
T TIGR03017 344 MSVLQRDV 351 (444)
T ss_pred HHHHHHHH
Confidence 33443333
No 223
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=20.48 E-value=2e+02 Score=23.35 Aligned_cols=17 Identities=24% Similarity=0.528 Sum_probs=12.9
Q ss_pred CCCCceeeEEEeccCCC
Q 011054 304 ELSKCSIQWYRVPSEGG 320 (494)
Q Consensus 304 dlSkcsiQW~Rv~~~gs 320 (494)
..+.-.|.||+.++++.
T Consensus 19 ~~~~~~i~W~k~~~~~~ 35 (106)
T cd05714 19 APHGPRIKWTKLESDGA 35 (106)
T ss_pred CCCCcEEEEEEeCCCCC
Confidence 36788999999975433
No 224
>PF05878 Phyto_Pns9_10: Phytoreovirus nonstructural protein Pns9/Pns10; InterPro: IPR008776 This family consists of the Phytoreovirus nonstructural proteins Pns9 and Pns10. The function of this family is unknown.
Probab=20.44 E-value=68 Score=33.61 Aligned_cols=48 Identities=23% Similarity=0.279 Sum_probs=37.7
Q ss_pred ccHHHHHHHHHHHHhhhhccCCccccccHHHHHHHHHHHHHHhHHHHHH
Q 011054 215 QDFEELMKEVQEARRIKMLHQPSKVMDMEHELRALRIQLAEKSKCSLLL 263 (494)
Q Consensus 215 qd~e~L~~EvqEARRIKmLH~PSKvMDmE~El~~LR~ql~eKs~~~v~L 263 (494)
+|+++--+..-+|-==-.+|||||.| |+-+|...|.+|..|....|++
T Consensus 173 ~Dv~~wleKl~~a~~g~~~~QKsk~q-M~~~i~~~Rn~I~n~I~~fVn~ 220 (312)
T PF05878_consen 173 DDVVEWLEKLPSAKGGILSNQKSKAQ-MRPEIQRIRNEILNKIQQFVNL 220 (312)
T ss_pred hhHHHHHhCCccccccchhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 35555445555555555789999998 9999999999999999888875
No 225
>PF09832 DUF2059: Uncharacterized protein conserved in bacteria (DUF2059); InterPro: IPR018637 This entry contains proteins that have no known function. ; PDB: 2X3O_B 3OAO_A.
Probab=20.40 E-value=4e+02 Score=20.42 Aligned_cols=42 Identities=26% Similarity=0.407 Sum_probs=32.8
Q ss_pred HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHH
Q 011054 137 MVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEIE 189 (494)
Q Consensus 137 mVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eeRa~A~aEIE 189 (494)
|+++++-.+|+. |++.+..|++ |+=.+|+++.+.+..++-.+
T Consensus 9 ~~~~y~~~ft~~---------El~~i~~FY~--Sp~Gqk~~~~~~~~~~~~~~ 50 (64)
T PF09832_consen 9 MAPIYAEHFTEE---------ELDAILAFYE--SPLGQKIVAKEPALMQASMQ 50 (64)
T ss_dssp HHHHHHHHS-HH---------HHHHHHHHHH--SHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCHH---------HHHHHHHHHC--CHHhHHHHHHhHHHHHHHHH
Confidence 567788888764 6788999986 78889999998887776555
No 226
>PF02736 Myosin_N: Myosin N-terminal SH3-like domain; InterPro: IPR004009 This domain has an SH3-like fold. It is found at the N terminus of many but not all myosins. The function of this domain is unknown.; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 2EC6_A 2W4H_M 1O1E_P 1O1D_D 1O18_A 1O1C_P 1O1B_D 1O1F_A 2W4A_M 2W4G_M ....
Probab=20.39 E-value=94 Score=22.99 Aligned_cols=30 Identities=30% Similarity=0.587 Sum_probs=22.6
Q ss_pred cccccCCCCcccceeeeeee-cCCcEEEEeecC
Q 011054 330 KSVYAPEPFDVGRILQAEIT-YNGQQITLTTTG 361 (494)
Q Consensus 330 k~~YAPEP~DVGr~LqadI~-~~g~k~~~~T~G 361 (494)
+.+|.|+|-+ -++.++|+ ..|.+++|.|..
T Consensus 2 ~~vWvpD~~e--gfv~g~I~~~~g~~vtV~~~~ 32 (42)
T PF02736_consen 2 KWVWVPDPKE--GFVKGEIIEEEGDKVTVKTED 32 (42)
T ss_dssp TEEEEEESSS--SEEEEEEEEEESSEEEEEETT
T ss_pred CEEEEeCCcc--cEEEEEEEEEcCCEEEEEECC
Confidence 4577888876 56778887 788889988753
No 227
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=20.25 E-value=1.5e+03 Score=26.92 Aligned_cols=65 Identities=22% Similarity=0.281 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhhHHHH
Q 011054 109 LKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAK 174 (494)
Q Consensus 109 LKkLr~~LesLrGRvaGrnKddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAk 174 (494)
.|..+..++.|++++.|-.--. +|+++-.+.--.+++....++.++...+.+.-..++..-+-..
T Consensus 193 ~k~~~~~l~~l~~~l~~~~~ls-~e~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 257 (1047)
T PRK10246 193 HKSARTELEKLQAQASGVALLT-PEQVQSLTASLQVLTDEEKQLLTAQQQQQQSLNWLTRLDELQQ 257 (1047)
T ss_pred HHHHHHHHHHHHHHHcCCcCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677888888886554333 3333333222245555555555555555555555555444433
No 228
>PRK01919 tatB sec-independent translocase; Provisional
Probab=20.15 E-value=5.7e+02 Score=24.98 Aligned_cols=10 Identities=30% Similarity=0.338 Sum_probs=5.7
Q ss_pred cccccccccc
Q 011054 324 LISGATKSVY 333 (494)
Q Consensus 324 ~IsGAtk~~Y 333 (494)
+=-|||..+|
T Consensus 128 ~k~~a~p~wy 137 (169)
T PRK01919 128 VKQAATPQWY 137 (169)
T ss_pred ccCCCCcHHH
Confidence 3446666665
No 229
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=20.13 E-value=8e+02 Score=23.76 Aligned_cols=43 Identities=26% Similarity=0.299 Sum_probs=23.2
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhhH
Q 011054 129 DDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASE 171 (494)
Q Consensus 129 ddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASe 171 (494)
++++++-.=++-+-.+|...+..+-+-..||.-|..-+++--+
T Consensus 8 ~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~ 50 (237)
T PF00261_consen 8 DELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEE 50 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555555555554433
Done!