Query 011054
Match_columns 494
No_of_seqs 37 out of 39
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 19:51:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011054.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011054hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dix_A Plectin-related protein 100.0 4E-126 1E-130 892.9 18.1 224 271-494 5-228 (230)
2 4djg_A Plectin-related protein 99.9 3.3E-28 1.1E-32 186.4 3.3 52 100-151 1-52 (52)
3 3vkg_A Dynein heavy chain, cyt 93.9 0.42 1.4E-05 59.2 13.5 139 129-270 1927-2068(3245)
4 2dfs_A Myosin-5A; myosin-V, in 89.8 1.7 5.9E-05 48.7 11.3 77 185-266 976-1052(1080)
5 3ol1_A Vimentin; structural ge 84.0 9.9 0.00034 32.4 10.4 79 166-253 18-99 (119)
6 3oja_B Anopheles plasmodium-re 80.5 28 0.00096 34.6 13.7 38 240-277 547-585 (597)
7 3swk_A Vimentin; cytoskeleton, 75.3 10 0.00035 31.0 7.4 67 178-253 13-79 (86)
8 3na7_A HP0958; flagellar bioge 74.8 54 0.0018 30.4 17.1 164 128-298 45-211 (256)
9 3vkg_A Dynein heavy chain, cyt 74.5 67 0.0023 40.6 17.1 28 53-85 1859-1886(3245)
10 3oja_B Anopheles plasmodium-re 72.3 71 0.0024 31.8 14.0 25 243-267 543-567 (597)
11 1i84_S Smooth muscle myosin he 63.6 30 0.001 38.8 10.2 7 33-39 765-771 (1184)
12 3mq9_A Bone marrow stromal ant 63.6 50 0.0017 32.2 10.7 86 164-263 373-469 (471)
13 4etp_A Kinesin-like protein KA 62.2 51 0.0017 33.0 10.7 40 350-389 137-192 (403)
14 4e81_A Chaperone protein DNAK; 61.1 57 0.0019 30.0 10.1 17 125-141 118-134 (219)
15 2dfs_A Myosin-5A; myosin-V, in 59.0 1.5E+02 0.0052 33.4 14.8 14 216-229 1024-1037(1080)
16 4efa_E V-type proton ATPase su 53.7 98 0.0034 28.1 10.3 35 156-192 14-49 (233)
17 2i1j_A Moesin; FERM, coiled-co 52.8 3.7 0.00012 43.0 0.8 124 89-229 321-447 (575)
18 3fpp_A Macrolide-specific effl 50.9 42 0.0014 31.0 7.5 25 144-168 84-108 (341)
19 4h7n_A Aldehyde dehydrogenase; 48.5 73 0.0025 31.9 9.3 64 95-176 42-105 (474)
20 3lh2_H FV 4E10 heavy chain; ep 48.2 49 0.0017 27.7 6.8 53 289-343 16-70 (137)
21 1m1j_B Fibrinogen beta chain; 48.0 2.6E+02 0.009 29.2 14.0 35 133-167 118-152 (464)
22 4dk0_A Putative MACA; alpha-ha 47.1 44 0.0015 31.2 7.0 10 185-194 128-137 (369)
23 1c1g_A Tropomyosin; contractIl 45.3 1.4E+02 0.0047 25.1 17.2 9 245-253 175-183 (284)
24 2ykz_A Cytochrome C'; electron 42.8 1.5E+02 0.005 24.8 9.7 94 103-202 10-116 (127)
25 3qh9_A Liprin-beta-2; coiled-c 40.0 40 0.0014 28.2 4.9 44 216-267 20-77 (81)
26 3na7_A HP0958; flagellar bioge 39.9 2.3E+02 0.0079 26.2 15.2 22 181-202 62-83 (256)
27 3k1k_C Enhancer; nanobody, ant 38.6 98 0.0034 24.9 7.0 38 288-326 15-52 (123)
28 2ens_A Advanced glycosylation 38.2 34 0.0012 25.1 3.9 24 288-314 23-46 (96)
29 2j8w_A Cytochrome C'; heme, ir 37.3 1.8E+02 0.0062 24.3 10.2 93 103-201 10-118 (129)
30 4b9q_A Chaperone protein DNAK; 37.2 2E+02 0.0067 29.7 10.6 17 125-141 506-522 (605)
31 3qne_A Seryl-tRNA synthetase, 37.1 1.2E+02 0.004 31.7 9.0 89 114-206 17-105 (485)
32 3tnu_A Keratin, type I cytoske 37.0 1.9E+02 0.0067 24.5 10.1 15 121-135 1-15 (131)
33 3osk_A Cytotoxic T-lymphocyte 36.3 45 0.0015 26.8 4.6 32 288-319 14-45 (130)
34 3r0m_A Llama VHH A12; IG domai 35.7 1.1E+02 0.0037 25.8 7.1 35 289-324 14-48 (143)
35 4gjt_B Poliovirus receptor-rel 35.0 52 0.0018 25.8 4.7 37 288-324 13-49 (123)
36 1m1j_C Fibrinogen gamma chain; 34.5 3.3E+02 0.011 27.8 11.6 76 185-268 47-129 (409)
37 2dq0_A Seryl-tRNA synthetase; 34.2 1.2E+02 0.0041 30.9 8.4 100 103-205 2-102 (455)
38 1mqv_A Cytochrome C'; four-hel 34.1 2E+02 0.007 23.9 9.0 91 104-202 7-113 (125)
39 3v6i_A V-type ATP synthase sub 33.8 1.9E+02 0.0066 25.2 8.7 37 161-197 14-50 (187)
40 3tnu_B Keratin, type II cytosk 33.2 2.2E+02 0.0076 24.0 11.2 70 123-207 1-71 (129)
41 1vf7_A Multidrug resistance pr 33.1 1.5E+02 0.005 28.2 8.3 44 180-228 82-125 (369)
42 3rk3_E Complexin-1; snare prot 33.1 23 0.00079 28.4 2.3 21 238-258 31-51 (63)
43 2k6i_A Uncharacterized protein 33.0 33 0.0011 26.9 3.2 28 166-193 21-48 (56)
44 3bj9_1 Immunoglobulin IOTA cha 32.0 39 0.0013 25.9 3.5 38 288-325 11-48 (116)
45 2edj_A Roundabout homolog 2; K 31.9 45 0.0015 24.4 3.7 24 288-314 21-44 (100)
46 1f5n_A Interferon-induced guan 31.3 3.8E+02 0.013 28.3 11.7 83 185-273 493-582 (592)
47 3bfo_A Mucosa-associated lymph 31.1 34 0.0011 24.9 2.8 24 288-314 16-39 (91)
48 4frw_A Poliovirus receptor-rel 30.8 27 0.00092 27.6 2.4 39 288-326 12-50 (218)
49 3k81_A Single strand antibody 30.7 2.1E+02 0.0072 23.4 7.9 38 288-326 13-50 (127)
50 3eak_A NBBCII10-FGLA; antibody 30.5 1.3E+02 0.0043 25.0 6.6 37 288-324 13-51 (137)
51 2ftc_M Mitochondrial ribosomal 30.0 76 0.0026 26.7 5.2 46 109-185 10-55 (110)
52 2oi9_C V beta, T cell receptor 30.0 54 0.0019 26.0 4.1 33 289-325 15-47 (121)
53 4dk0_A Putative MACA; alpha-ha 29.6 1.6E+02 0.0054 27.4 7.8 13 184-196 120-132 (369)
54 4hwu_A Fibroblast growth facto 29.2 1.6E+02 0.0055 21.2 6.6 53 288-345 14-68 (95)
55 3lss_A Seryl-tRNA synthetase; 29.1 3.7E+02 0.013 27.9 11.1 103 101-206 6-138 (484)
56 1xn7_A Hypothetical protein YH 28.7 54 0.0018 26.0 3.8 22 63-84 8-29 (78)
57 1gqa_A Cytochrome C'; electron 28.5 2.6E+02 0.0089 23.4 8.3 93 103-202 8-119 (130)
58 2ckn_A Basic fibroblast growth 28.2 1.2E+02 0.0041 22.1 5.5 23 288-314 22-44 (95)
59 3k74_B Nanobody; immunoglobuli 27.4 62 0.0021 25.2 4.0 36 289-325 12-47 (115)
60 3tpk_A Immunoglobulin heavy ch 27.4 1.2E+02 0.0042 24.8 5.9 36 288-324 17-52 (136)
61 3qyc_A VH domain of IGG molecu 27.0 1.4E+02 0.005 25.0 6.4 36 288-324 15-50 (146)
62 1in0_A YAJQ protein, HI1034; a 26.6 22 0.00076 32.8 1.4 18 122-139 131-148 (163)
63 1kil_E Complexin I snare-compl 26.2 24 0.00083 27.2 1.3 20 238-257 28-47 (49)
64 3iyk_A VP5; icosahedral virus; 25.6 6.5E+02 0.022 27.0 12.3 92 106-204 117-214 (526)
65 1fo0_B Protein (BM3.3 T cell r 25.6 1.6E+02 0.0054 22.6 6.0 36 289-327 15-50 (112)
66 2qhl_A Novel immune-type recep 25.0 2E+02 0.0067 21.9 6.4 51 288-342 12-66 (111)
67 1l2p_A ATP synthase B chain; a 24.4 2.1E+02 0.0072 20.9 6.8 26 166-191 4-29 (61)
68 3iy0_H FAB 14, heavy domain; c 24.2 1.6E+02 0.0055 23.0 5.9 36 288-324 13-48 (120)
69 2otu_A FV light chain variable 24.2 53 0.0018 25.4 3.0 35 289-325 15-49 (115)
70 3t0v_A Immunoglobulin variable 23.9 76 0.0026 25.6 4.0 38 288-326 13-50 (123)
71 3fpp_A Macrolide-specific effl 23.8 4.3E+02 0.015 24.3 9.8 26 147-172 73-98 (341)
72 2p45_B Antibody CAB-RN05; seMe 23.5 85 0.0029 24.4 4.1 36 289-325 16-51 (123)
73 2dq3_A Seryl-tRNA synthetase; 23.2 1.1E+02 0.0038 30.7 5.8 93 109-206 4-102 (425)
74 2yc1_A Single chain antibody f 22.7 65 0.0022 24.7 3.2 37 288-325 13-49 (117)
75 2ftc_H L13MT, MRP-L13, 39S rib 22.6 44 0.0015 30.1 2.5 43 311-357 17-67 (148)
76 1oaq_L Light chain; antibody, 22.5 56 0.0019 25.4 2.9 39 288-326 13-51 (120)
77 2wzp_D Camelid VHH5; baseplate 22.5 72 0.0025 24.8 3.5 37 288-325 13-49 (123)
78 1u00_A HSC66, chaperone protei 22.4 3.1E+02 0.011 24.9 8.1 18 125-142 115-132 (227)
79 3b9v_A Heavy chain variable do 22.1 71 0.0024 24.7 3.4 36 289-325 14-49 (120)
80 2x1q_A Gelsolin nanobody; cont 22.1 1.1E+02 0.0038 24.2 4.6 37 288-325 13-49 (127)
81 2f1m_A Acriflavine resistance 21.9 2.3E+02 0.0078 25.3 7.1 66 138-203 62-129 (277)
82 1cpq_A Cytochrome C'; electron 21.6 2.4E+02 0.0084 23.6 6.8 94 103-202 8-118 (129)
83 2k02_A Ferrous iron transport 21.3 73 0.0025 26.1 3.4 20 63-82 8-27 (87)
84 1qfw_M FV, antibody (anti beta 21.3 80 0.0027 23.9 3.4 35 289-326 15-49 (108)
85 2h32_A Immunoglobulin IOTA cha 21.1 81 0.0028 25.2 3.6 38 288-325 13-50 (126)
86 1tvd_A T cell receptor, ES204 21.1 70 0.0024 24.5 3.1 36 289-326 14-49 (116)
87 3k3q_A Llama AA1 VHH domain; l 20.8 2.5E+02 0.0086 23.7 6.8 37 288-325 16-63 (151)
88 3u6r_L Antibody 1:7 (light cha 20.6 1.9E+02 0.0065 24.1 5.9 36 288-326 13-48 (143)
89 1kxt_B Immunoglobulin VHH frag 20.6 1.1E+02 0.0038 24.3 4.3 37 288-325 13-49 (127)
90 3ol1_A Vimentin; structural ge 20.2 3.9E+02 0.013 22.5 10.7 83 153-254 33-118 (119)
91 3bp6_B Programmed cell death 1 20.2 90 0.0031 25.2 3.7 26 289-314 16-43 (202)
No 1
>4dix_A Plectin-related protein; PH domain, IG domain, malonate ION, beta sheet, PH superfold cytosolic, protein binding; 1.70A {Arabidopsis thaliana}
Probab=100.00 E-value=3.6e-126 Score=892.86 Aligned_cols=224 Identities=75% Similarity=1.240 Sum_probs=211.8
Q ss_pred hhhhcccCCceeeccccccCceeEEeeCCCCCCCCCCceeeEEEeccCCCccccccccccccccCCCCcccceeeeeeec
Q 011054 271 KRIEEKLSDSYELDGSEALGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELISGATKSVYAPEPFDVGRILQAEITY 350 (494)
Q Consensus 271 kr~~en~~~~yeL~G~e~LGS~L~i~~~~d~~~dlSkcsiQW~Rv~~~gsk~e~IsGAtk~~YAPEP~DVGr~LqadI~~ 350 (494)
.+.+||.+++|+|||+|+|||+|+|+||+|++||||+|+|||||+++|||++|+|||||||+||||||||||+|||||++
T Consensus 5 ~~~e~n~~~~y~L~G~e~LGs~L~i~~~~~~~~dlS~CsiQW~R~~~egs~re~IsGAtk~~YAPeP~DVGrlLqadi~~ 84 (230)
T 4dix_A 5 SKSEENISLVYEIDGTEALGSCLRVRPCSNDAPDLSKCTIQWYRSSSDGSKKELISGATKSVYAPEPFDVGRVLHADIIY 84 (230)
T ss_dssp --------CCEEEESCCBTTSCEEEEESSTTSCCGGGSEEEEEEECTTSSSEEECTTCCSSEECCCGGGBTSEEEEEEEE
T ss_pred cccccCCCcceeecchhhccceEEEEeccCCCCcccccceEEEEeecCCCceeEEeccccccccCCccccccEEEEEEec
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeecCCCCCCCCchhHHHHHhhcCCceeeEEEEeecCCCCCCCceEEEEecceeEEeecCceeeehhhcccccc
Q 011054 351 NGQQITLTTTGAVDPAPGLGSYVEALVRKHDVEFHVVVTQMNGVDHPSESIHVLHVGKMRIKLCKGKMTIAKEYYSTSMQ 430 (494)
Q Consensus 351 ~g~k~~~~T~GPidpaaGL~~yVEaL~rk~~tEFNVvi~Q~NG~d~~s~s~hvl~igk~RikL~KG~~t~AkE~YSssMQ 430 (494)
||++++++|+|||||||||++|||+|+||+++||||||+||||+||+|+|+||||||||||||||||+|+|||+||++||
T Consensus 85 ~G~k~t~~T~gpId~a~GL~~yVEaL~rk~~tEFNVvv~q~nG~d~~s~sihvl~vgk~RiKL~kg~~t~akE~YSssmQ 164 (230)
T 4dix_A 85 DGHSLSLSTVGKIDPAAGLGSYVEALVRKHDVDFNVVVTQMSGEDHTSESIHLFHVGKMRIKLCKGKTVIAKEYYSSAMQ 164 (230)
T ss_dssp TTEEEEEEEEEEBBCCTTHHHHHHHHHTTSEEEEEEEEEEETTEECCCCCEEEEEEESSEEEEEETTEEEEEEECCTTCE
T ss_pred CCcEEEEEecCCCCCCchhHHHHHHHhhcCCCcEEEEEEEEcCccCccceEEEEEeccEEEEEecCceEEeeeeecccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCcchhhhhhhccccCCceEEEEeeccccchhHHHHHHhhhcccceeecCCCCCCCCCC
Q 011054 431 LCGVRGGGNAAAQALFWQAKKGVSFVLAFESERERNATIMLARRLAFDCNIMLAGPEDRSPLGS 494 (494)
Q Consensus 431 LCGvRGgg~AAa~AlfWq~rkglS~vL~fESeReRNaAImLARrfA~DCNv~l~gP~d~~~~g~ 494 (494)
|||||||||||||||||||||||||||+||||||||||||||||||+||||+|+||+|++|+|+
T Consensus 165 LCGvRggg~aA~~AlfWq~rkgls~~L~fEseReRNaAImLARrfA~DcNv~lagp~d~~~~~~ 228 (230)
T 4dix_A 165 LCGVRGGGNAAAQALYWQAKKGVSFVIAFESERERNAAIMLARRFACDCNVTLAGPEDRTETGQ 228 (230)
T ss_dssp EEECSSCTTSGGGEEEEEEETTEEEEEEESSHHHHHHHHHHHHHHHHHTTCCCBSTTCCC----
T ss_pred eeeccCCcccccceeeEeecCCcEEEEEeccchhhhhHHHHHHHHhccCceEEecCCccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999985
No 2
>4djg_A Plectin-related protein; coiled-coil, four helix bundle, dimerization, cytosolic, Pro binding; 1.90A {Arabidopsis thaliana}
Probab=99.94 E-value=3.3e-28 Score=186.43 Aligned_cols=52 Identities=98% Similarity=1.230 Sum_probs=48.6
Q ss_pred hhhcchHHHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHHhhhhhhhh
Q 011054 100 AASLEKHVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGE 151 (494)
Q Consensus 100 va~Ler~vLLKkLr~~LesLrGRvaGrnKddveeaismVeaLavqltqrE~E 151 (494)
+|+||||+||||||++||+|+|||+|||||||||||||||||||||||||+|
T Consensus 1 ~a~Ler~vLlKkLr~~Le~L~GRvaGrnkddveeaismVealavqltqrE~E 52 (52)
T 4djg_A 1 ATSLEKHVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGE 52 (52)
T ss_dssp ---CTTCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCCTTC
T ss_pred CcchhHHHHHHHHHHHHHHHhhhhcCCcHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5899999999999999999999999999999999999999999999999997
No 3
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=93.88 E-value=0.42 Score=59.16 Aligned_cols=139 Identities=14% Similarity=0.152 Sum_probs=81.4
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 011054 129 DDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASED---AKKLVDEERAFARAEIESARAAVQRVEESLQEH 205 (494)
Q Consensus 129 ddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeD---AkkiV~eeRa~A~aEIE~ArAaV~Rve~al~Eq 205 (494)
+-+.+|-.-|+.|-.+|+..+-+|.+.+.|..++-.-+...+.+ -|+.|+++.+.+..+-+.+.+--..+++-|.+-
T Consensus 1927 ~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~~~~~~~~~~~ei~~~k~~~e~dL~~A 2006 (3245)
T 3vkg_A 1927 KKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKA 2006 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34678899999999999999999999988888765555443333 344555444444333222222222233333322
Q ss_pred HHhhhhcCcccHHHHHHHHHHHHhhhhccCCccccccHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 011054 206 EQMSRASGKQDFEELMKEVQEARRIKMLHQPSKVMDMEHELRALRIQLAEKSKCSLLLRKELAMS 270 (494)
Q Consensus 206 e~~s~~s~kqd~e~L~~EvqEARRIKmLH~PSKvMDmE~El~~LR~ql~eKs~~~v~L~KEL~~~ 270 (494)
+-. .-.+++++++.++..+|.. ++-..=.++-+.|.+|..|+.++.+...+.-.|+.|++..
T Consensus 2007 ~Pa--~Pkr~~l~~ae~~l~~~~~-~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~ 2068 (3245)
T 3vkg_A 2007 EPT--GPLREEVEQLENAANELKL-KQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKV 2068 (3245)
T ss_dssp ------CHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC--ChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211 2223355555555554432 1111123455678899999999999988888888887643
No 4
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=89.75 E-value=1.7 Score=48.67 Aligned_cols=77 Identities=12% Similarity=0.110 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccHHHHHHHHHHHHhhhhccCCccccccHHHHHHHHHHHHHHhHHHHHHH
Q 011054 185 RAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQPSKVMDMEHELRALRIQLAEKSKCSLLLR 264 (494)
Q Consensus 185 ~aEIE~ArAaV~Rve~al~Eqe~~s~~s~kqd~e~L~~EvqEARRIKmLH~PSKvMDmE~El~~LR~ql~eKs~~~v~L~ 264 (494)
..|.+++.+-|..+++-+++.+...+...+ +.+.|.++.++.. .-|+ .||-+|+.|...||+|+.+-........
T Consensus 976 ~~e~~~~~~~v~~L~~e~~~l~~~~~~~~k-e~~~lee~~~~~~--~~L~--~kv~~L~~e~~~L~qq~~~l~~~~~~~~ 1050 (1080)
T 2dfs_A 976 EEEAKNATNRVLSLQEEIAKLRKELHQTQT-EKKTIEEWADKYK--HETE--QLVSELKEQNTLLKTEKEELNRRIHDQA 1050 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH--HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH--HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555554433333 2333333322222 1333 8899999999999999988776555555
Q ss_pred HH
Q 011054 265 KE 266 (494)
Q Consensus 265 KE 266 (494)
++
T Consensus 1051 ~~ 1052 (1080)
T 2dfs_A 1051 KE 1052 (1080)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 5
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=83.97 E-value=9.9 Score=32.43 Aligned_cols=79 Identities=19% Similarity=0.387 Sum_probs=48.3
Q ss_pred HHHhhHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccHHHHHHHHHHHHhhhhccCCcccccc
Q 011054 166 LKKASEDAKKLVD---EERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQPSKVMDM 242 (494)
Q Consensus 166 lKqASeDAkkiV~---eeRa~A~aEIE~ArAaV~Rve~al~Eqe~~s~~s~kqd~e~L~~EvqEARRIKmLH~PSKvMDm 242 (494)
+..--+|.|+-++ .+++....||.+++.++..+..-+++.-.. +.+-..|+..|++.|.++-=.| +|+
T Consensus 18 ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~-r~~~E~di~~lrK~lD~~~l~r--------~dL 88 (119)
T 3ol1_A 18 YEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQ-REEAENTLQSFRQDVDNASLAR--------LDL 88 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH--------HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHhhhcccHHHHHH--------HHH
Confidence 3334456666554 477888889999999998888777654333 2222236666666666654333 356
Q ss_pred HHHHHHHHHHH
Q 011054 243 EHELRALRIQL 253 (494)
Q Consensus 243 E~El~~LR~ql 253 (494)
|..|+.|+..|
T Consensus 89 E~~iesL~eEl 99 (119)
T 3ol1_A 89 ERKVESLQEEI 99 (119)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666655544
No 6
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=80.45 E-value=28 Score=34.64 Aligned_cols=38 Identities=18% Similarity=0.276 Sum_probs=21.5
Q ss_pred cccHHHHHHHHHHHHHHhHHHHHHHHHHH-Hhhhhhccc
Q 011054 240 MDMEHELRALRIQLAEKSKCSLLLRKELA-MSKRIEEKL 277 (494)
Q Consensus 240 MDmE~El~~LR~ql~eKs~~~v~L~KEL~-~~kr~~en~ 277 (494)
..||..++.-++++.|-..+--++.+|+. +.....+|.
T Consensus 547 ~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~~ 585 (597)
T 3oja_B 547 IALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNP 585 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34566666666666666666666666664 444445444
No 7
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=75.30 E-value=10 Score=30.96 Aligned_cols=67 Identities=18% Similarity=0.353 Sum_probs=49.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccHHHHHHHHHHHHhhhhccCCccccccHHHHHHHHHHH
Q 011054 178 DEERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQPSKVMDMEHELRALRIQL 253 (494)
Q Consensus 178 ~eeRa~A~aEIE~ArAaV~Rve~al~Eqe~~s~~s~kqd~e~L~~EvqEARRIKmLH~PSKvMDmE~El~~LR~ql 253 (494)
..+++....||.+++.++..+..-+++.-..-+..+ -|+-.|++.|.+|-=.| +|+|..|..|...|
T Consensus 13 ~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E-~d~~~LrkdvD~a~l~r--------~dLE~kvesL~eEl 79 (86)
T 3swk_A 13 TNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAE-NTLQSFRQDVDNASLAR--------LDLERKVESLQEEI 79 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHTTHHHHHHHH--------HHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHH--------HHHHHHHHHHHHHH
Confidence 357888889999999999999888876544443333 37888888888776544 57777777776654
No 8
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=74.84 E-value=54 Score=30.43 Aligned_cols=164 Identities=12% Similarity=0.177 Sum_probs=88.7
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhhHHHH--HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 011054 128 KDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAK--KLVDEERAFARAEIESARAAVQRVEESLQEH 205 (494)
Q Consensus 128 KddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAk--kiV~eeRa~A~aEIE~ArAaV~Rve~al~Eq 205 (494)
++.++.+-.-++-+..+..+.|.++-+-+.-+++.-.-|..++ +.| .-+..|-.++..+|..+..-++.+.+.+++.
T Consensus 45 ~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~-~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~ 123 (256)
T 3na7_A 45 NKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIK-SERELRSLNIEEDIAKERSNQANREIENLQNEIKRK 123 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS-SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666677778888888888888888888888887777665 222 2233444455555555555555555555544
Q ss_pred HHhhhhcCcccHHHHHHHHHHHHhhhhccCCccccccHHHHHHHHHHHHHHhH-HHHHHHHHHHHhhhhhcccCCceeec
Q 011054 206 EQMSRASGKQDFEELMKEVQEARRIKMLHQPSKVMDMEHELRALRIQLAEKSK-CSLLLRKELAMSKRIEEKLSDSYELD 284 (494)
Q Consensus 206 e~~s~~s~kqd~e~L~~EvqEARRIKmLH~PSKvMDmE~El~~LR~ql~eKs~-~~v~L~KEL~~~kr~~en~~~~yeL~ 284 (494)
+...... ++.++.+..++.+++.=- =..+-+.+-|+..|+.+..+-.. .--.|.+.-..+++.. +..+.=.+.
T Consensus 124 ~~~l~~~-~~~l~~~~~~l~~~~~~~----~~~~~e~~~e~~~l~~~r~~l~~~i~~~lL~~Yerir~~~-~g~avv~v~ 197 (256)
T 3na7_A 124 SEKQEDL-KKEMLELEKLALELESLV----ENEVKNIKETQQIIFKKKEDLVEKTEPKIYSFYERIRRWA-KNTSIVTIK 197 (256)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH-GGGSEEECB
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCceEEEee
Confidence 4332222 124444444444333200 00111223334433333322211 1224444445555433 445677788
Q ss_pred cccccCceeEEeeC
Q 011054 285 GSEALGSYLRIKPC 298 (494)
Q Consensus 285 G~e~LGS~L~i~~~ 298 (494)
|--|-|..+.|.|.
T Consensus 198 ~~~C~GC~~~lppq 211 (256)
T 3na7_A 198 KQACGGCFIRLNDK 211 (256)
T ss_dssp TTBCTTTCCBCCHH
T ss_pred CCccCCCCeeeCHH
Confidence 88888888888775
No 9
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=74.51 E-value=67 Score=40.59 Aligned_cols=28 Identities=11% Similarity=0.167 Sum_probs=15.6
Q ss_pred hhHHHHHHHHHHHHHHhcccchhHhHHHhhhCh
Q 011054 53 SMKEVVARETAQLLEQQKRLSVRDLANKFEKGL 85 (494)
Q Consensus 53 slKEvVakEta~L~~q~kRLSVRdLA~KFekgl 85 (494)
+.++.|.+=-+.. | .||.+++.+|=+.+
T Consensus 1859 ~~~~~~~~~~~~i---H--~sv~~~s~~~~~~~ 1886 (3245)
T 3vkg_A 1859 SHRDAVVSSLVYI---H--QTIGEANIRLLKRQ 1886 (3245)
T ss_dssp CHHHHHHHHHHHH---H--HHHHHHHHHHHHSS
T ss_pred hHHHHHHHHHHHH---H--HHHHHHHHHHHHHh
Confidence 4555555433322 2 47778877776554
No 10
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=72.30 E-value=71 Score=31.76 Aligned_cols=25 Identities=40% Similarity=0.315 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Q 011054 243 EHELRALRIQLAEKSKCSLLLRKEL 267 (494)
Q Consensus 243 E~El~~LR~ql~eKs~~~v~L~KEL 267 (494)
|.|+..|+.++.+.-.....|++|+
T Consensus 543 ~~~~~~le~~~~~~~~~~~~l~~e~ 567 (597)
T 3oja_B 543 EQENIALEKQLDNKRAKQAELRQET 567 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHhhhhhHHHHHHHHH
Confidence 3444455555555444444444444
No 11
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=63.57 E-value=30 Score=38.79 Aligned_cols=7 Identities=43% Similarity=0.895 Sum_probs=3.8
Q ss_pred CcccCCC
Q 011054 33 NYKIGAN 39 (494)
Q Consensus 33 ~Yk~g~n 39 (494)
.|++|-.
T Consensus 765 ~~~iG~T 771 (1184)
T 1i84_S 765 LYRIGQS 771 (1184)
T ss_dssp TCCBCSS
T ss_pred ceeEcCe
Confidence 4666643
No 12
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=63.56 E-value=50 Score=32.24 Aligned_cols=86 Identities=21% Similarity=0.232 Sum_probs=45.0
Q ss_pred HHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcc----------cHHHHHHHHHHH-Hhhhh
Q 011054 164 DFLKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQ----------DFEELMKEVQEA-RRIKM 232 (494)
Q Consensus 164 ~~lKqASeDAkkiV~eeRa~A~aEIE~ArAaV~Rve~al~Eqe~~s~~s~kq----------d~e~L~~EvqEA-RRIKm 232 (494)
..|+.|.+..++++++-++.+ |+++.+.. +++-|.|-++.....++| =++-|.++|-.+ .||+
T Consensus 373 eal~~~~~~i~~~l~~~~~~~--e~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 446 (471)
T 3mq9_A 373 EALKDAQTRITAARDGLRAVM--EARNVTHL---LQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVE- 446 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHhhHHHH--HhhhHHHH---HHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHH-
Confidence 345666666666666554443 33333333 334444444444444443 234555555332 2443
Q ss_pred ccCCccccccHHHHHHHHHHHHHHhHHHHHH
Q 011054 233 LHQPSKVMDMEHELRALRIQLAEKSKCSLLL 263 (494)
Q Consensus 233 LH~PSKvMDmE~El~~LR~ql~eKs~~~v~L 263 (494)
..|.||..|-.+|.+-+...-.|
T Consensus 447 --------~~~~~~~~~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 447 --------ELEGEITTLNHKLQDASAEVERL 469 (471)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45778887777777766554443
No 13
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=62.22 E-value=51 Score=33.03 Aligned_cols=40 Identities=15% Similarity=0.419 Sum_probs=27.9
Q ss_pred cCCcEEEEeecCC---------CCCCCCc-hhHHHHHhh------cCCceeeEEEE
Q 011054 350 YNGQQITLTTTGA---------VDPAPGL-GSYVEALVR------KHDVEFHVVVT 389 (494)
Q Consensus 350 ~~g~k~~~~T~GP---------idpaaGL-~~yVEaL~r------k~~tEFNVvi~ 389 (494)
++|.-.+|++-|+ ..|.+|+ ..-++.|+. ..+.+|.|.++
T Consensus 137 l~G~N~tifAYGqTGSGKTyTM~g~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS 192 (403)
T 4etp_A 137 LDGYNVAIFAYGQTGSGKTFTMLNPGDGIIPSTISHIFNWINKLKTKGWDYKVNAE 192 (403)
T ss_dssp HTTCCEEEEEESCTTSSHHHHHHCTTTSHHHHHHHHHHHHHHHHHTTTEEEEEEEE
T ss_pred hCCcceEEEEECCCCCCCceEeCCCCCccchhHHHHHHHHHHhhhccCceEEEEEE
Confidence 6899999998776 2345676 455677764 35668888764
No 14
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A
Probab=61.06 E-value=57 Score=30.00 Aligned_cols=17 Identities=29% Similarity=0.485 Sum_probs=9.7
Q ss_pred CCChhhHHHHHHHHHHH
Q 011054 125 GRNKDDVEEAIAMVEAL 141 (494)
Q Consensus 125 GrnKddveeaismVeaL 141 (494)
|-++++|++.+.--+.+
T Consensus 118 ~Ls~eeI~~m~~~a~~~ 134 (219)
T 4e81_A 118 GLNEDEIQKMVRDAEAN 134 (219)
T ss_dssp SCCHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHh
Confidence 45666777665544443
No 15
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=59.01 E-value=1.5e+02 Score=33.44 Aligned_cols=14 Identities=14% Similarity=0.043 Sum_probs=8.3
Q ss_pred cHHHHHHHHHHHHh
Q 011054 216 DFEELMKEVQEARR 229 (494)
Q Consensus 216 d~e~L~~EvqEARR 229 (494)
.+..|.+|.+..|.
T Consensus 1024 kv~~L~~e~~~L~q 1037 (1080)
T 2dfs_A 1024 LVSELKEQNTLLKT 1037 (1080)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44556666666654
No 16
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=53.66 E-value=98 Score=28.14 Aligned_cols=35 Identities=31% Similarity=0.434 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHH-hhHHHHHHHHHHHHhHHHHHHHHH
Q 011054 156 KAEVKKLADFLKK-ASEDAKKLVDEERAFARAEIESAR 192 (494)
Q Consensus 156 K~EVkKlA~~lKq-ASeDAkkiV~eeRa~A~aEIE~Ar 192 (494)
..+++||.+|..| |-+-|..|..+.... ++||.++
T Consensus 14 ~~~i~~m~~fI~qEA~eKA~EI~~kAeeE--~~~ek~~ 49 (233)
T 4efa_E 14 NDELNKMQAFIRKEAEEKAKEIQLKADQE--YEIEKTN 49 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 4678999999876 888888887665544 4444444
No 17
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=52.80 E-value=3.7 Score=42.97 Aligned_cols=124 Identities=26% Similarity=0.372 Sum_probs=34.8
Q ss_pred HhhhHHHHhHHhhhcchHHHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHHhhhh--hhhhhHHHHH-HHHHHHHH
Q 011054 89 AKLSEEAKLREAASLEKHVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQ--REGELIQEKA-EVKKLADF 165 (494)
Q Consensus 89 akLs~EaK~reva~Ler~vLLKkLr~~LesLrGRvaGrnKddveeaismVeaLavqltq--rE~ELiQeK~-EVkKlA~~ 165 (494)
.+|+.|-+.|+.|-=++..|-.+|+..=+..+ +..+++.++-...+-|+-++-+ .|.++++.|+ |..-.-.-
T Consensus 321 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~ 395 (575)
T 2i1j_A 321 EKLQLEIAARERAEKKQQEYQDRLRQMQEEME-----RSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQR 395 (575)
T ss_dssp TTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHC-------------------------------
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777888888888888888887777665 3456666666666666655443 3333333332 22222222
Q ss_pred HHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccHHHHHHHHHHHHh
Q 011054 166 LKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARR 229 (494)
Q Consensus 166 lKqASeDAkkiV~eeRa~A~aEIE~ArAaV~Rve~al~Eqe~~s~~s~kqd~e~L~~EvqEARR 229 (494)
|...+++ -.+||..-.+++..+.+-+.|+.++.+..+. +.+.|++|+++||+
T Consensus 396 l~~~~~~----~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~--------e~~~~~~~~~~a~~ 447 (575)
T 2i1j_A 396 LEETKNM----EAAERQKLEDEIRAKQEEVSRIQQEVELKDS--------ETRRLQEEVEDARR 447 (575)
T ss_dssp ----------------------------------------------------------CHHHHH
T ss_pred HHHHHHh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
Confidence 2222222 2455555666666677777777666554443 33445555555444
No 18
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=50.93 E-value=42 Score=31.04 Aligned_cols=25 Identities=20% Similarity=0.206 Sum_probs=11.9
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHH
Q 011054 144 QLTQREGELIQEKAEVKKLADFLKK 168 (494)
Q Consensus 144 qltqrE~ELiQeK~EVkKlA~~lKq 168 (494)
+|.+-+.++-.-+.+..+...++++
T Consensus 84 ~l~~a~~~~~~a~~~~~r~~~L~~~ 108 (341)
T 3fpp_A 84 QRQQAEAELKLARVTYSRQQRLAQT 108 (341)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444444444444555555555543
No 19
>4h7n_A Aldehyde dehydrogenase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ALDH_ddaldh, COG1012, glyco_hydro_97; 2.00A {Anabaena variabilis}
Probab=48.48 E-value=73 Score=31.89 Aligned_cols=64 Identities=16% Similarity=0.225 Sum_probs=45.1
Q ss_pred HHhHHhhhcchHHHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhhHHHH
Q 011054 95 AKLREAASLEKHVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAK 174 (494)
Q Consensus 95 aK~reva~Ler~vLLKkLr~~LesLrGRvaGrnKddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAk 174 (494)
..|+....=||..+|+++.++|+ .|+|++-++++. .=|.+..+..||...+..+.....-+.
T Consensus 42 ~~W~~~~~~~R~~~L~~~a~~l~--------~~~~ela~~~~~----------e~Gk~~~~~~ev~~~~~~~~~~~~~~~ 103 (474)
T 4h7n_A 42 SRWQELGVEGRITTLQQWKQAIL--------SRREQLTEALVN----------DTGRLSITVLEIDSFLASIDRWCGLAP 103 (474)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHH--------TTHHHHHHHHHH----------HHSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHH--------HHHHHHHHHHHH----------HcCCcHHHHHHHHHHHHHHHHHHhhhh
Confidence 35888888899999999999998 477887766543 224455566677777776666555444
Q ss_pred HH
Q 011054 175 KL 176 (494)
Q Consensus 175 ki 176 (494)
++
T Consensus 104 ~~ 105 (474)
T 4h7n_A 104 EL 105 (474)
T ss_dssp HH
T ss_pred hc
Confidence 43
No 20
>3lh2_H FV 4E10 heavy chain; epitope-scaffold, immune system; 2.65A {Homo sapiens} PDB: 3h3p_H 3lhp_H 2xtj_D
Probab=48.19 E-value=49 Score=27.67 Aligned_cols=53 Identities=19% Similarity=0.240 Sum_probs=30.0
Q ss_pred cCceeEEeeCCCCCCCCCCceeeEEEeccCCCccccccc--cccccccCCCCcccce
Q 011054 289 LGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELISG--ATKSVYAPEPFDVGRI 343 (494)
Q Consensus 289 LGS~L~i~~~~d~~~dlSkcsiQW~Rv~~~gsk~e~IsG--Atk~~YAPEP~DVGr~ 343 (494)
.|..+.|...... .+++.-.+.|||..+..+-+-||.- .....+-++.|. ||+
T Consensus 16 ~G~sVtL~C~~s~-~~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~~~~~-~Rf 70 (137)
T 3lh2_H 16 PGSSVTVSCKASG-GSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQ-GRI 70 (137)
T ss_dssp SSCCEEEEEEEES-SCSTTSCEEEEEECTTCCCEEEEEEEGGGTEEEECTTTT-TTE
T ss_pred CCCCEEEEEEecC-CcccccEEEEEEECCCCCCEEEEEEEcCCCccccCcccC-CcE
Confidence 4677776554332 2445678999999885555555541 123333344454 664
No 21
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=47.95 E-value=2.6e+02 Score=29.16 Aligned_cols=35 Identities=6% Similarity=0.083 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHH
Q 011054 133 EAIAMVEALAVQLTQREGELIQEKAEVKKLADFLK 167 (494)
Q Consensus 133 eaismVeaLavqltqrE~ELiQeK~EVkKlA~~lK 167 (494)
++...|.+|-+.|.++|..+..-..-|++....|.
T Consensus 118 ~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e 152 (464)
T 1m1j_B 118 TMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEME 152 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccccccchhhHHHHHHHHHH
Confidence 45557788888888888766555555555554443
No 22
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=47.14 E-value=44 Score=31.17 Aligned_cols=10 Identities=20% Similarity=0.474 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 011054 185 RAEIESARAA 194 (494)
Q Consensus 185 ~aEIE~ArAa 194 (494)
+++++.+++.
T Consensus 128 ~a~~~~~~~~ 137 (369)
T 4dk0_A 128 KAEMDVVQEN 137 (369)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 23
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=45.26 E-value=1.4e+02 Score=25.10 Aligned_cols=9 Identities=11% Similarity=0.124 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 011054 245 ELRALRIQL 253 (494)
Q Consensus 245 El~~LR~ql 253 (494)
++..++.++
T Consensus 175 ~~~~~~~~~ 183 (284)
T 1c1g_A 175 DLERAEERA 183 (284)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 24
>2ykz_A Cytochrome C'; electron transport, haemoprotein, 4-helix bundle; HET: PCA HEC; 0.84A {Achromobacter xylosoxidans} PDB: 3zqv_A* 2xlm_A* 1e83_A* 1e84_A* 1e86_A* 1e85_A* 2yld_A* 2yli_A* 1cgo_A* 2xle_A* 2xm0_A* 2xlw_A* 2xld_A* 2xm4_A* 2xlo_A* 2yl0_A* 2yl1_A* 2ylg_A* 3zqy_A* 2xl6_A* ...
Probab=42.80 E-value=1.5e+02 Score=24.76 Aligned_cols=94 Identities=15% Similarity=0.173 Sum_probs=61.4
Q ss_pred cchHHHHHHHHHHHHHhhcccCCC---ChhhHHHHHHHHHHHHHhhhhh--h--------hhhHHHHHHHHHHHHHHHHh
Q 011054 103 LEKHVLLKKLRDALESLRGRVAGR---NKDDVEEAIAMVEALAVQLTQR--E--------GELIQEKAEVKKLADFLKKA 169 (494)
Q Consensus 103 Ler~vLLKkLr~~LesLrGRvaGr---nKddveeaismVeaLavqltqr--E--------~ELiQeK~EVkKlA~~lKqA 169 (494)
=+|+.++|.++..+..|.+=+-|. +.+.|..+...+..++..+..- + -++-++..+.++++.-|..+
T Consensus 10 ~~Rq~~m~~m~~~~~~l~~m~kg~~~~d~~~~~~~A~~l~~~a~~~~~~F~~gs~~~~A~p~IW~~~~~F~~~~~~~~~a 89 (127)
T 2ykz_A 10 KYRQSALTLMASHFGRMTPVVKGQAPYDAVQIKANVEVLKTLSALPWAAFGPGTEGGDARPEIWSDAASFKQKQQAFQDN 89 (127)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHTTSSCCCHHHHHHHHHHHHHHHTSSGGGSCTTCCCTTBCTHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHhhhhHhhCCCCCCCcccCHHHHhCHHHHHHHHHHHHHH
Confidence 368899999999999999999999 4455666666666666544321 0 12345778888888888877
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011054 170 SEDAKKLVDEERAFARAEIESARAAVQRVEESL 202 (494)
Q Consensus 170 SeDAkkiV~eeRa~A~aEIE~ArAaV~Rve~al 202 (494)
......... .. ..+..++++..|++.-
T Consensus 90 a~~l~~aA~---~g---D~~~~~~a~~~v~~sC 116 (127)
T 2ykz_A 90 IVKLSAAAD---AG---DLDKLRAAFGDVGASC 116 (127)
T ss_dssp HHHHHHHHH---HT---CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh---cC---CHHHHHHHHHHHHHHH
Confidence 665543321 11 2455666777766543
No 25
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=39.96 E-value=40 Score=28.21 Aligned_cols=44 Identities=32% Similarity=0.388 Sum_probs=34.7
Q ss_pred cHHHHHHHHHHHHhhhhccCCccccccHH--------------HHHHHHHHHHHHhHHHHHHHHHH
Q 011054 216 DFEELMKEVQEARRIKMLHQPSKVMDMEH--------------ELRALRIQLAEKSKCSLLLRKEL 267 (494)
Q Consensus 216 d~e~L~~EvqEARRIKmLH~PSKvMDmE~--------------El~~LR~ql~eKs~~~v~L~KEL 267 (494)
|-|+|..||++-| .||=+||+ ||..|+.|+.+|-.+.-.|+-+|
T Consensus 20 ~~E~L~qEi~~Lr--------~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 20 KAEELLQELRHLK--------IKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 6678888888876 35667775 68889999999888888888776
No 26
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=39.93 E-value=2.3e+02 Score=26.19 Aligned_cols=22 Identities=5% Similarity=0.231 Sum_probs=10.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHH
Q 011054 181 RAFARAEIESARAAVQRVEESL 202 (494)
Q Consensus 181 Ra~A~aEIE~ArAaV~Rve~al 202 (494)
......+|+.+++-+.+.++-|
T Consensus 62 ~~~~e~~i~~~~~ri~~~~~~l 83 (256)
T 3na7_A 62 VSKNEQTLQDTNAKIASIQKKM 83 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555554444433
No 27
>3k1k_C Enhancer; nanobody, antibody-complex, chromophore, luminescence, photoprotein, luminescent protein/immune system complex; HET: GYS; 2.15A {Lama pacos} SCOP: b.1.1.1 PDB: 3miq_E* 3ogo_E*
Probab=38.58 E-value=98 Score=24.90 Aligned_cols=38 Identities=18% Similarity=0.389 Sum_probs=23.2
Q ss_pred ccCceeEEeeCCCCCCCCCCceeeEEEeccCCCcccccc
Q 011054 288 ALGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELIS 326 (494)
Q Consensus 288 ~LGS~L~i~~~~d~~~dlSkcsiQW~Rv~~~gsk~e~Is 326 (494)
..|..+.|...... .+.+.-.+.|||..+..+-+-|+.
T Consensus 15 ~~G~~vtL~C~~s~-~~~~~~~v~Wyrq~~g~~~~~l~~ 52 (123)
T 3k1k_C 15 QPGGSLRLSCAASG-FPVNRYSMRWYRQAPGKEREWVAG 52 (123)
T ss_dssp CTTCCEEEEEEEES-SCTTTSCEEEEEECSSSCCEEEEE
T ss_pred CCCCCEEEEEEeeC-CcccccEEEEEEECCCCCCEEEEE
Confidence 35677777654332 234667899999988544444433
No 28
>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.21 E-value=34 Score=25.09 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=17.2
Q ss_pred ccCceeEEeeCCCCCCCCCCceeeEEE
Q 011054 288 ALGSYLRIKPCSNNGPELSKCSIQWYR 314 (494)
Q Consensus 288 ~LGS~L~i~~~~d~~~dlSkcsiQW~R 314 (494)
..|..+.+.....+.|. -.|+|||
T Consensus 23 ~~G~~v~l~C~~~g~p~---~~v~W~k 46 (96)
T 2ens_A 23 APGGTVTLTCEVPAQPS---PQIHWMK 46 (96)
T ss_dssp CTTCEEEEECCCSSCSS---CCCCCEE
T ss_pred cCCCeEEEEEEEccCCC---CEEEEEE
Confidence 46777888766565555 3799999
No 29
>2j8w_A Cytochrome C'; heme, iron, transport, metal-binding, electron transfer, electron transport; HET: HEM; 1.29A {Rubrivivax gelatinosus} SCOP: a.24.3.2 PDB: 1jaf_A* 2j9b_A*
Probab=37.33 E-value=1.8e+02 Score=24.26 Aligned_cols=93 Identities=15% Similarity=0.153 Sum_probs=62.4
Q ss_pred cchHHHHHHHHHHHHHhhcccCCC---ChhhHHHHHHHHHHHHHhhhhh-------------hhhhHHHHHHHHHHHHHH
Q 011054 103 LEKHVLLKKLRDALESLRGRVAGR---NKDDVEEAIAMVEALAVQLTQR-------------EGELIQEKAEVKKLADFL 166 (494)
Q Consensus 103 Ler~vLLKkLr~~LesLrGRvaGr---nKddveeaismVeaLavqltqr-------------E~ELiQeK~EVkKlA~~l 166 (494)
=+|+.++|.++..+..|.+=+-|. +.+.|..+..-+..++-.+..- =-+.-++..+.++++.-|
T Consensus 10 ~~Rq~~m~~m~~~~~~l~~m~kg~~~~d~~~~~~~A~~l~~~a~~~~~~F~~gs~~g~s~~A~p~IW~~~~~F~~~~~~~ 89 (129)
T 2j8w_A 10 EYRQSAFTLIANHFGRVAAMAQGKAPFDAKVAAENIALVSTLSKLPLTAFGPGTDKGHGTEAKPAVWSDAAGFKAAADKF 89 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHTSGGGSCCTTCCSSTTCCBCTHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHhhhHHhCCCCCCCCCccccCHHHHhCHHHHHHHHHHH
Confidence 368899999999999999999998 5566666666666666665320 112345778888888888
Q ss_pred HHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 011054 167 KKASEDAKKLVDEERAFARAEIESARAAVQRVEES 201 (494)
Q Consensus 167 KqASeDAkkiV~eeRa~A~aEIE~ArAaV~Rve~a 201 (494)
..|......... .. ..+..++++..|++.
T Consensus 90 ~~aa~~L~~aA~---~~---D~~~~~~a~~~v~~s 118 (129)
T 2j8w_A 90 AAAVDKLDAAGK---TG---DFAQIKAAVGETGGA 118 (129)
T ss_dssp HHHHHHHHHHHH---HT---CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh---cC---CHHHHHHHHHHHHHH
Confidence 877665433321 11 245556677776654
No 30
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=37.16 E-value=2e+02 Score=29.71 Aligned_cols=17 Identities=29% Similarity=0.485 Sum_probs=10.3
Q ss_pred CCChhhHHHHHHHHHHH
Q 011054 125 GRNKDDVEEAIAMVEAL 141 (494)
Q Consensus 125 GrnKddveeaismVeaL 141 (494)
|-+++||++.+.--+.+
T Consensus 506 ~ls~~ei~~~~~~~~~~ 522 (605)
T 4b9q_A 506 GLNEDEIQKMVRDAEAN 522 (605)
T ss_dssp SCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhhhh
Confidence 56777777666544443
No 31
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=37.09 E-value=1.2e+02 Score=31.69 Aligned_cols=89 Identities=25% Similarity=0.163 Sum_probs=54.3
Q ss_pred HHHHHhhcccCCCChhhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHH
Q 011054 114 DALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEIESARA 193 (494)
Q Consensus 114 ~~LesLrGRvaGrnKddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eeRa~A~aEIE~ArA 193 (494)
.+-++|+-| |-+.++|++-+++-+ --.++.++=.+|-.++-++.|--.-+|.+-+|+..+..+-+ .-..+|....+
T Consensus 17 ~v~~~~~~R--~~~~~~~~~~~~ld~-~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~-~l~~~i~~le~ 92 (485)
T 3qne_A 17 IIKASQKKR--GDSVELVDEIIAEYK-EWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKE-KLSNEKKEIIE 92 (485)
T ss_dssp HHHHHHHHH--TCCSHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHH-HHHHHHHHHHH
Confidence 344555555 233445776665533 34444444455666666666554456777788877777655 44677888888
Q ss_pred HHHHHHHHHHHHH
Q 011054 194 AVQRVEESLQEHE 206 (494)
Q Consensus 194 aV~Rve~al~Eqe 206 (494)
.+..+++.|++.-
T Consensus 93 ~~~~~~~~~~~~l 105 (485)
T 3qne_A 93 KEAEADKNLRSKI 105 (485)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888777543
No 32
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=36.96 E-value=1.9e+02 Score=24.50 Aligned_cols=15 Identities=40% Similarity=0.603 Sum_probs=0.0
Q ss_pred cccCCCChhhHHHHH
Q 011054 121 GRVAGRNKDDVEEAI 135 (494)
Q Consensus 121 GRvaGrnKddveeai 135 (494)
|-+|-+|+.|+|.-.
T Consensus 1 ~~ia~knr~eaE~~y 15 (131)
T 3tnu_A 1 GSTAEKNRKDAEEWF 15 (131)
T ss_dssp ---------------
T ss_pred ChHHHHhHHHHHHHH
Confidence 456777777777644
No 33
>3osk_A Cytotoxic T-lymphocyte protein 4; beta sandwich, homodimer, immunoglobulin superfamily (beta S fold, receptor, signalling, B7-1(CD80), B7-2(CD86); HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 PDB: 2x44_D 1i85_C 1ah1_A* 1i8l_C* 3bx7_C
Probab=36.27 E-value=45 Score=26.76 Aligned_cols=32 Identities=3% Similarity=-0.089 Sum_probs=21.1
Q ss_pred ccCceeEEeeCCCCCCCCCCceeeEEEeccCC
Q 011054 288 ALGSYLRIKPCSNNGPELSKCSIQWYRVPSEG 319 (494)
Q Consensus 288 ~LGS~L~i~~~~d~~~dlSkcsiQW~Rv~~~g 319 (494)
..|..+.|...-......+.-.+.|||..+..
T Consensus 14 ~~G~~vtL~C~~s~~~~~~~~~v~Wyrq~~g~ 45 (130)
T 3osk_A 14 SSRGIASFVCEYASPGKATEVRVTVLRQADSQ 45 (130)
T ss_dssp CTTSCEEEEEEECCCSSCCEEEEEEEEEETTE
T ss_pred eCCCeEEEEEEecCCCCCceEEEEEEEeCCCC
Confidence 45777777655444333456679999998743
No 34
>3r0m_A Llama VHH A12; IG domain, immune system; 1.50A {Lama glama} PDB: 3rjq_B* 1g9e_A 1hcv_A 1shm_A 3qxw_A 3qxv_A
Probab=35.67 E-value=1.1e+02 Score=25.83 Aligned_cols=35 Identities=17% Similarity=0.324 Sum_probs=22.2
Q ss_pred cCceeEEeeCCCCCCCCCCceeeEEEeccCCCcccc
Q 011054 289 LGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKREL 324 (494)
Q Consensus 289 LGS~L~i~~~~d~~~dlSkcsiQW~Rv~~~gsk~e~ 324 (494)
.|..+.|...... .+.+.-.+.|||..+..+-.-|
T Consensus 14 ~G~svtL~C~~s~-~~~~~~~v~WyrQ~pg~~~~~L 48 (143)
T 3r0m_A 14 AGGSLRLSCTASG-RISSSYDMGWFRQAPGKEREFV 48 (143)
T ss_dssp TTCCEEEEEEESS-CCCTTEEEEEEEECTTSCCEEE
T ss_pred cCCCEEEEEEeeC-CCcCCcEEEEEEECCCCCCEEE
Confidence 4677777554332 2456778999999885443434
No 35
>4gjt_B Poliovirus receptor-related protein 4; six-bladed -propeller, IGV-like fold, viral entry, MV-H, NEC BETA4/BETA5 groove; HET: NAG; 3.10A {Homo sapiens}
Probab=34.97 E-value=52 Score=25.79 Aligned_cols=37 Identities=22% Similarity=0.338 Sum_probs=23.4
Q ss_pred ccCceeEEeeCCCCCCCCCCceeeEEEeccCCCcccc
Q 011054 288 ALGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKREL 324 (494)
Q Consensus 288 ~LGS~L~i~~~~d~~~dlSkcsiQW~Rv~~~gsk~e~ 324 (494)
.+|+...+...-...++.+.-.|.|||..+.+....+
T Consensus 13 ~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~ 49 (123)
T 4gjt_B 13 VLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQEL 49 (123)
T ss_dssp CTTSEEEECCEECCCTTCCEEEEEEEECCCSSCCCEE
T ss_pred EcCCCEEEEEEEeCCccCceeEEEEEEcCCCCCccee
Confidence 3577666644335455555567999999875554443
No 36
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=34.53 E-value=3.3e+02 Score=27.79 Aligned_cols=76 Identities=9% Similarity=0.150 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCc-------ccHHHHHHHHHHHHhhhhccCCccccccHHHHHHHHHHHHHHh
Q 011054 185 RAEIESARAAVQRVEESLQEHEQMSRASGK-------QDFEELMKEVQEARRIKMLHQPSKVMDMEHELRALRIQLAEKS 257 (494)
Q Consensus 185 ~aEIE~ArAaV~Rve~al~Eqe~~s~~s~k-------qd~e~L~~EvqEARRIKmLH~PSKvMDmE~El~~LR~ql~eKs 257 (494)
..||++.-..|+.+-.+++.--+-.+...+ |....|++|+.+--. .+-..+.+|+.|+.++....
T Consensus 47 l~elsn~ts~v~~Lvk~iq~~~~~~Q~~~~d~~e~~tq~skkml~~~~~~e~--------~~~~~~~~i~~l~~~~~~~~ 118 (409)
T 1m1j_C 47 LQQATNSTGSIEYLIQHIKTIYPSEKQTLPQSIEQLTQKSKKIIEEIIRYEN--------TILAHENTIQQLTDMHIMNS 118 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCSSTTCCSSCHHHHHHHHHHHHHHHHHTHH--------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhhHHHHHHHHHHHHHHHHH--------HhcchHHHHHHHHHHHHhhH
Confidence 346666666666666666655332222211 122233333332211 23334567777777776655
Q ss_pred HHHHHHHHHHH
Q 011054 258 KCSLLLRKELA 268 (494)
Q Consensus 258 ~~~v~L~KEL~ 268 (494)
....+|+..+.
T Consensus 119 ~~i~~l~~~i~ 129 (409)
T 1m1j_C 119 NKITQLKQKIA 129 (409)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555443
No 37
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=34.15 E-value=1.2e+02 Score=30.88 Aligned_cols=100 Identities=13% Similarity=0.101 Sum_probs=51.4
Q ss_pred cchHHHHHHHHHHHHHhhcccCCCC-hhhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 011054 103 LEKHVLLKKLRDALESLRGRVAGRN-KDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEER 181 (494)
Q Consensus 103 Ler~vLLKkLr~~LesLrGRvaGrn-KddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eeR 181 (494)
||-..+..+.-.+-++|+-|-.. + -+.|++-+++-+- -.++.++=.+|-.++-++.|--.-+|...+|+..+.++-+
T Consensus 2 ld~~~~r~n~~~~~~~~~~R~~~-~~~~~~~~~~~l~~~-~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~ 79 (455)
T 2dq0_A 2 LDIKLIRENPELVKNDLIKRGEL-EKVKWVDEILKLDTE-WRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSR 79 (455)
T ss_dssp CCHHHHHHCHHHHHHHHHHHTCG-GGTHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHH
T ss_pred CCHHHHHhCHHHHHHHHHHhCCC-chhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 34334444444455555555211 1 2235555544322 2233333333444444444433334555677777776655
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHH
Q 011054 182 AFARAEIESARAAVQRVEESLQEH 205 (494)
Q Consensus 182 a~A~aEIE~ArAaV~Rve~al~Eq 205 (494)
. ...+|....+....+++.+++.
T Consensus 80 ~-~~~~~~~~~~~~~~~~~~~~~~ 102 (455)
T 2dq0_A 80 E-IVKRIGELENEVEELKKKIDYY 102 (455)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHH
Confidence 4 4667888888888888877664
No 38
>1mqv_A Cytochrome C'; four-helix bundle, electron transport; HET: HEM; 1.78A {Rhodopseudomonas palustris} SCOP: a.24.3.2 PDB: 1a7v_A*
Probab=34.13 E-value=2e+02 Score=23.89 Aligned_cols=91 Identities=18% Similarity=0.301 Sum_probs=64.2
Q ss_pred chHHHHHHHHHHHHHhhcccCCC---ChhhHHHHHHHHHHHHHhhhhh---------h----hhhHHHHHHHHHHHHHHH
Q 011054 104 EKHVLLKKLRDALESLRGRVAGR---NKDDVEEAIAMVEALAVQLTQR---------E----GELIQEKAEVKKLADFLK 167 (494)
Q Consensus 104 er~vLLKkLr~~LesLrGRvaGr---nKddveeaismVeaLavqltqr---------E----~ELiQeK~EVkKlA~~lK 167 (494)
+|+.++|.++..+..|.+=+-|. +.+.|..+...+..++-.+..- . -+.-++..+.++++.-|.
T Consensus 7 ~Rq~~m~~m~~~~~~l~~m~kg~~~~d~~~~~~~a~~l~~~a~~~~~~F~~gs~~~~~s~A~p~IW~~~~~F~~~~~~~~ 86 (125)
T 1mqv_A 7 QRKAILKQMGEATKPIAAMLKGEAKWDQAVVQKSLAAIADDSKKLPALFPADSKTGGDTAALPKIFEDKAKFDDLFAKLA 86 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHGGGSCCGGGTTCSSCCBCGGGGGSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHhhhhHhhCCCCCCCCCCCccCHHHHhCHHHHHHHHHHHH
Confidence 58899999999999999999888 5566777777777777666431 1 123357788899988888
Q ss_pred HhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011054 168 KASEDAKKLVDEERAFARAEIESARAAVQRVEESL 202 (494)
Q Consensus 168 qASeDAkkiV~eeRa~A~aEIE~ArAaV~Rve~al 202 (494)
.|........ . ..+..++++..|++.-
T Consensus 87 ~aa~~l~~aa-~-------d~~~~~~a~~~v~~sC 113 (125)
T 1mqv_A 87 AAATAAQGTI-K-------DEASLKANIGGVLGNC 113 (125)
T ss_dssp HHHHHHHHHC-C-------SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-c-------CHHHHHHHHHHHHhHH
Confidence 7776554333 1 3555677777776653
No 39
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=33.79 E-value=1.9e+02 Score=25.24 Aligned_cols=37 Identities=19% Similarity=0.306 Sum_probs=26.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 011054 161 KLADFLKKASEDAKKLVDEERAFARAEIESARAAVQR 197 (494)
Q Consensus 161 KlA~~lKqASeDAkkiV~eeRa~A~aEIE~ArAaV~R 197 (494)
+....+..|-+.|.+|+++.++.|.+..+.+.....+
T Consensus 14 ~a~~I~~eA~~~a~~I~~eA~~eA~~~~~~~~~~~e~ 50 (187)
T 3v6i_A 14 EIQALLQEAEAKAEAVKREAEEKAKALLQARERALEA 50 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888888888888888887777776655443
No 40
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=33.17 E-value=2.2e+02 Score=24.03 Aligned_cols=70 Identities=20% Similarity=0.346 Sum_probs=18.3
Q ss_pred cCCCChhhHHHHH-HHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 011054 123 VAGRNKDDVEEAI-AMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEIESARAAVQRVEES 201 (494)
Q Consensus 123 vaGrnKddveeai-smVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eeRa~A~aEIE~ArAaV~Rve~a 201 (494)
+|-||+.|+|.-. +=++-|-.+-++.-.+|-.-|.|+..+=..+ ..-++||++.+.-..-++..
T Consensus 1 ia~knr~eaE~~y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~i---------------q~L~~el~~l~~~~~~LE~~ 65 (129)
T 3tnu_B 1 MANRSRTEAESWYQTKYEELQQTAGRHGDDLRNTKHEISEMNRMI---------------QRLRAEIDNVKKQCANLQNA 65 (129)
T ss_dssp ---------------------------------CHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHhHHHHHHHH
Confidence 3556777776644 2234444444444444444455544432211 12345566665555555555
Q ss_pred HHHHHH
Q 011054 202 LQEHEQ 207 (494)
Q Consensus 202 l~Eqe~ 207 (494)
|.+-+.
T Consensus 66 l~e~e~ 71 (129)
T 3tnu_B 66 IADAEQ 71 (129)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555444
No 41
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=33.14 E-value=1.5e+02 Score=28.22 Aligned_cols=44 Identities=18% Similarity=0.274 Sum_probs=30.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccHHHHHHHHHHHH
Q 011054 180 ERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEAR 228 (494)
Q Consensus 180 eRa~A~aEIE~ArAaV~Rve~al~Eqe~~s~~s~kqd~e~L~~EvqEAR 228 (494)
+...|+++++.|++-..|.+..++. ...-+++++..+.+++.|+
T Consensus 82 ~l~~a~a~l~~a~~~~~R~~~L~~~-----g~is~~~~~~a~~~~~~a~ 125 (369)
T 1vf7_A 82 DYQSAQANLASTQEQAQRYKLLVAD-----QAVSKQQYADANAAYLQSK 125 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT-----TSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC-----CCcCHHHHHHHHHHHHHHH
Confidence 4456777888888888887766543 2334567888877777776
No 42
>3rk3_E Complexin-1; snare proteins, membrane fusion, membrane protein-exocytosis transport protein complex, membrane protein-exocytosis COMP; 3.50A {Homo sapiens} PDB: 3rl0_g
Probab=33.10 E-value=23 Score=28.40 Aligned_cols=21 Identities=33% Similarity=0.349 Sum_probs=17.7
Q ss_pred cccccHHHHHHHHHHHHHHhH
Q 011054 238 KVMDMEHELRALRIQLAEKSK 258 (494)
Q Consensus 238 KvMDmE~El~~LR~ql~eKs~ 258 (494)
|--.||-|=+.+|++|..|..
T Consensus 31 Kh~kME~ERE~mRQ~IRdKY~ 51 (63)
T 3rk3_E 31 KYAKMEAEREAVRQGIRDKYG 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 345799999999999999863
No 43
>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}
Probab=33.02 E-value=33 Score=26.91 Aligned_cols=28 Identities=29% Similarity=0.213 Sum_probs=21.9
Q ss_pred HHHhhHHHHHHHHHHHHhHHHHHHHHHH
Q 011054 166 LKKASEDAKKLVDEERAFARAEIESARA 193 (494)
Q Consensus 166 lKqASeDAkkiV~eeRa~A~aEIE~ArA 193 (494)
+|.|-++|+++|++....|..=|+.||.
T Consensus 21 IKeAE~~A~~iVeeA~~ea~~ii~eAre 48 (56)
T 2k6i_A 21 VKLAEEQAVKEIEEAKNRAEQIKAEAIE 48 (56)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888887777777775
No 44
>3bj9_1 Immunoglobulin IOTA chain, immunoglobulin lambda- like polypeptide 1; immunoglobulin domain, beta sheet, polymorphism, immune system; 2.00A {Homo sapiens} PDB: 2h3n_A
Probab=31.97 E-value=39 Score=25.85 Aligned_cols=38 Identities=26% Similarity=0.461 Sum_probs=22.9
Q ss_pred ccCceeEEeeCCCCCCCCCCceeeEEEeccCCCccccc
Q 011054 288 ALGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELI 325 (494)
Q Consensus 288 ~LGS~L~i~~~~d~~~dlSkcsiQW~Rv~~~gsk~e~I 325 (494)
..|..+.|........+.+.-.+.|||..+.++-.-+|
T Consensus 11 ~~G~~v~L~C~~~~~~~~~~~~v~W~rq~~~~~~~~l~ 48 (116)
T 3bj9_1 11 ALGTTIRLTCTLRNDHDIGVYSVYWYQQRPGHPPRFLL 48 (116)
T ss_dssp ETTCCEEEEEEECSSSCGGGCCEEEEEECTTSCCEEEE
T ss_pred cCCCcEEEEEEeecCccCCCceEEEEEeCCCCCcEEEE
Confidence 35666666555443334456789999998754333343
No 45
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.95 E-value=45 Score=24.36 Aligned_cols=24 Identities=21% Similarity=0.337 Sum_probs=16.1
Q ss_pred ccCceeEEeeCCCCCCCCCCceeeEEE
Q 011054 288 ALGSYLRIKPCSNNGPELSKCSIQWYR 314 (494)
Q Consensus 288 ~LGS~L~i~~~~d~~~dlSkcsiQW~R 314 (494)
..|+.+.+.....+.|.. .|.|||
T Consensus 21 ~~G~~~~l~C~~~g~p~p---~v~W~~ 44 (100)
T 2edj_A 21 AVDGTALLKCKATGDPLP---VISWLK 44 (100)
T ss_dssp ESSSEEEECCEEECSSCC---EEEEEE
T ss_pred cCCCcEEEEEEEEEcCCC---EEEEEE
Confidence 357777776555555543 499999
No 46
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=31.27 E-value=3.8e+02 Score=28.34 Aligned_cols=83 Identities=20% Similarity=0.362 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh---cCcccHHHHHHHHHHHHhhhhccCCccccccHHHHH----HHHHHHHHHh
Q 011054 185 RAEIESARAAVQRVEESLQEHEQMSRA---SGKQDFEELMKEVQEARRIKMLHQPSKVMDMEHELR----ALRIQLAEKS 257 (494)
Q Consensus 185 ~aEIE~ArAaV~Rve~al~Eqe~~s~~---s~kqd~e~L~~EvqEARRIKmLH~PSKvMDmE~El~----~LR~ql~eKs 257 (494)
++.=|+|++....+++-..+++++-.. +-++-+..|.++..+-|+ .+|-+-.++ ++|-++ -|+.++.+|+
T Consensus 493 ~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~ql~~kme~~~~-~~~~e~~~~--~~~~~~~~~~~~~~g~~~~~ 569 (592)
T 1f5n_A 493 RVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRV-QLLKEQERT--LALKLQEQEQLLKEGFQKES 569 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH--HHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 344456777777776665555554322 222344444443333222 222111111 222222 2455555544
Q ss_pred HHHHHHHHHHHHhhhh
Q 011054 258 KCSLLLRKELAMSKRI 273 (494)
Q Consensus 258 ~~~v~L~KEL~~~kr~ 273 (494)
-.|++|+...++.
T Consensus 570 ---~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 570 ---RIMKNEIQDLQTK 582 (592)
T ss_dssp ---HHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHh
Confidence 4567777655543
No 47
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}
Probab=31.15 E-value=34 Score=24.89 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=15.9
Q ss_pred ccCceeEEeeCCCCCCCCCCceeeEEE
Q 011054 288 ALGSYLRIKPCSNNGPELSKCSIQWYR 314 (494)
Q Consensus 288 ~LGS~L~i~~~~d~~~dlSkcsiQW~R 314 (494)
..|+.+.+.....+.|.. .|+|||
T Consensus 16 ~~G~~~~l~C~~~g~p~p---~i~W~~ 39 (91)
T 3bfo_A 16 MPGSTLVLQCVAVGSPIP---HYQWFK 39 (91)
T ss_dssp CTTSCEEEECEEECSSCC---EEEEEE
T ss_pred cCCCcEEEEEEeccCCCC---EEEEEc
Confidence 356666666555555543 899999
No 48
>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}
Probab=30.77 E-value=27 Score=27.62 Aligned_cols=39 Identities=21% Similarity=0.296 Sum_probs=24.9
Q ss_pred ccCceeEEeeCCCCCCCCCCceeeEEEeccCCCcccccc
Q 011054 288 ALGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELIS 326 (494)
Q Consensus 288 ~LGS~L~i~~~~d~~~dlSkcsiQW~Rv~~~gsk~e~Is 326 (494)
.+|+.+.+...-.+.|+-..-.|+|||-........++.
T Consensus 12 ~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~ 50 (218)
T 4frw_A 12 VLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELAL 50 (218)
T ss_dssp ETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEE
T ss_pred EcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEE
Confidence 357777776555655655555799999876555444433
No 49
>3k81_A Single strand antibody VHH domain; krepa6, single domain antibody, immune system, RNA BIND protein; 3.40A {Lama glama}
Probab=30.70 E-value=2.1e+02 Score=23.44 Aligned_cols=38 Identities=16% Similarity=0.302 Sum_probs=24.6
Q ss_pred ccCceeEEeeCCCCCCCCCCceeeEEEeccCCCcccccc
Q 011054 288 ALGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELIS 326 (494)
Q Consensus 288 ~LGS~L~i~~~~d~~~dlSkcsiQW~Rv~~~gsk~e~Is 326 (494)
..|..+.|...... .+.+...+.|||..+..+-+-||.
T Consensus 13 ~~G~~VtL~C~~s~-~~~~~~~v~WyrQ~pg~~~~~L~~ 50 (127)
T 3k81_A 13 QAGGSLRLSCVVSG-ITFASEAWGWYRRAPGKQRELIAA 50 (127)
T ss_dssp CBTCEEEEEEBCSC-CCCSSSCEEEEEECSSSCEEEEEE
T ss_pred ccCCCEEEEEEecC-CCccCcEEEEEEECCCCCCEEEEE
Confidence 45777877655433 356678899999988444344433
No 50
>3eak_A NBBCII10-FGLA; antibody, nanobody, humanization, VHH domain, immune system; 1.95A {Camelus dromedarius} SCOP: b.1.1.1
Probab=30.53 E-value=1.3e+02 Score=25.00 Aligned_cols=37 Identities=24% Similarity=0.463 Sum_probs=22.7
Q ss_pred ccCceeEEeeCCCCC--CCCCCceeeEEEeccCCCcccc
Q 011054 288 ALGSYLRIKPCSNNG--PELSKCSIQWYRVPSEGGKREL 324 (494)
Q Consensus 288 ~LGS~L~i~~~~d~~--~dlSkcsiQW~Rv~~~gsk~e~ 324 (494)
..|..+.|....... ++.+.-.+.|||..+..+-+-|
T Consensus 13 ~~G~~vtL~C~~s~~~~~~~~~~~v~WyrQ~pg~~~~~L 51 (137)
T 3eak_A 13 QPGGSLRLSCAASGGSEYSYSTFSLGWFRQAPGQGLEAV 51 (137)
T ss_dssp CTTCCEEEEEEEESCTTSCGGGSEEEEEEECTTSCEEEE
T ss_pred CCCCCEEEEeEecCCccccccCcEEEEEEECCCCCCEEE
Confidence 346677766543322 1456678999999885443444
No 51
>2ftc_M Mitochondrial ribosomal protein L22 isoform A; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_M
Probab=29.99 E-value=76 Score=26.72 Aligned_cols=46 Identities=24% Similarity=0.256 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHH
Q 011054 109 LKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFAR 185 (494)
Q Consensus 109 LKkLr~~LesLrGRvaGrnKddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eeRa~A~ 185 (494)
-||+|-+..-+||. .|+||+...+. +=|.|++.-.|+++...+||.
T Consensus 10 pkK~r~va~~IrG~-------~v~eAl~~L~f------------------------~pkkaa~~v~klL~sA~aNA~ 55 (110)
T 2ftc_M 10 KDKMWYLAKLIRGM-------SIDQALAQLEF------------------------NDKKGAKIIKEVLLEAQDMAV 55 (110)
T ss_pred HHHHHHHHHHHcCC-------cHHHHHHHHHH------------------------CCHHHHHHHHHHHHHHHHhHH
Confidence 48999999999986 68899888763 456677777888888777764
No 52
>2oi9_C V beta, T cell receptor beta chain; TCR, MHC, immune system; 2.35A {Mus musculus} PDB: 2e7l_C
Probab=29.99 E-value=54 Score=26.02 Aligned_cols=33 Identities=15% Similarity=0.268 Sum_probs=19.9
Q ss_pred cCceeEEeeCCCCCCCCCCceeeEEEeccCCCccccc
Q 011054 289 LGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELI 325 (494)
Q Consensus 289 LGS~L~i~~~~d~~~dlSkcsiQW~Rv~~~gsk~e~I 325 (494)
.|..+.|.... +.+.-.|.|||..+.++-.-++
T Consensus 15 ~G~~vtL~C~~----~~~~~~v~W~rq~~g~~~~~l~ 47 (121)
T 2oi9_C 15 TGEKVTLSCNQ----TNNHNNMYWYRQDTGHELRLIY 47 (121)
T ss_dssp TTCCEEEEEEE----SSCCSEEEEEEESSSSCCEEEE
T ss_pred CCCcEEEEEEe----cCCCCeEEEEEECCCCCcEEEE
Confidence 46666664442 3356789999998754433333
No 53
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=29.61 E-value=1.6e+02 Score=27.40 Aligned_cols=13 Identities=31% Similarity=0.565 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q 011054 184 ARAEIESARAAVQ 196 (494)
Q Consensus 184 A~aEIE~ArAaV~ 196 (494)
|+++++.|++.+.
T Consensus 120 a~~~~~~a~a~~~ 132 (369)
T 4dk0_A 120 AKATLNNAKAEMD 132 (369)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 54
>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}
Probab=29.19 E-value=1.6e+02 Score=21.23 Aligned_cols=53 Identities=19% Similarity=0.266 Sum_probs=30.8
Q ss_pred ccCceeEEeeCCCCCCCCCCceeeEEEec--cCCCccccccccccccccCCCCcccceee
Q 011054 288 ALGSYLRIKPCSNNGPELSKCSIQWYRVP--SEGGKRELISGATKSVYAPEPFDVGRILQ 345 (494)
Q Consensus 288 ~LGS~L~i~~~~d~~~dlSkcsiQW~Rv~--~~gsk~e~IsGAtk~~YAPEP~DVGr~Lq 345 (494)
..|..+.+.....+. -.|.||+-. ...+.+-.+++.+=.+....+-|-|.|-=
T Consensus 14 ~~G~~~~l~C~~~~~-----p~v~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C 68 (95)
T 4hwu_A 14 APGESLELQCMLKDA-----AVISWTKDGVHLGPNNRTVLIGEYLQIKGATPRDSGLYAC 68 (95)
T ss_dssp CTTSCEEEECCCCTT-----CEEEEEETTEEECCCSSEEEETTEEEECSCCGGGCEEEEE
T ss_pred CCCCEEEEEEEeCCC-----CEEEEEECCEECCCCceEEEeCCEEEECcCCcccCEEEEE
Confidence 357777777655542 489999821 11223333444455556667778887753
No 55
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=29.12 E-value=3.7e+02 Score=27.94 Aligned_cols=103 Identities=16% Similarity=0.072 Sum_probs=50.0
Q ss_pred hhcchHHHHHHH--HHHHHHhhcccCCCChhhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHH----------
Q 011054 101 ASLEKHVLLKKL--RDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKK---------- 168 (494)
Q Consensus 101 a~Ler~vLLKkL--r~~LesLrGRvaGrnKddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKq---------- 168 (494)
+.||-..+-.+. -.+-++|+-|- .+.++|++-+++=+- -.++.++=.+|-.++-++.|--.-+|.
T Consensus 6 mmldi~~~r~~~~~~~v~~~~~~R~--~~~~~~d~~~~ld~~-~r~~~~~~~~l~~~rN~~sk~i~~~~~~~~~~~~~~~ 82 (484)
T 3lss_A 6 MVLDIQLFRDETGANIIRESQRRRF--ADPDIVDAIIEADKK-WRRTQFLTEASKKLINICSKAVGAKKKAKEADGDTSE 82 (484)
T ss_dssp CCCCGGGGGSHHHHHHHHHHHHHTT--CCTTHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC------
T ss_pred ccccHHHHHcCCCHHHHHHHHHhcC--CChHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc
Confidence 355655555553 33556666663 334457776665333 333333333444444444443223343
Q ss_pred --------------hhHHHHHH----HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 011054 169 --------------ASEDAKKL----VDEERAFARAEIESARAAVQRVEESLQEHE 206 (494)
Q Consensus 169 --------------ASeDAkki----V~eeRa~A~aEIE~ArAaV~Rve~al~Eqe 206 (494)
+.+|+..+ ..+.-..-..+|....+.+..+++.+++.-
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~i~~le~~~~~~~~~~~~~l 138 (484)
T 3lss_A 83 IPPQVKEAYENGTLKGEQVEQLCVLQLKQLSKDLSDQVAGLAKEAQQLEEERDKLM 138 (484)
T ss_dssp ----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccchhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666 444345566777777777777777776543
No 56
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=28.65 E-value=54 Score=26.01 Aligned_cols=22 Identities=14% Similarity=0.324 Sum_probs=18.7
Q ss_pred HHHHHHhcccchhHhHHHhhhC
Q 011054 63 AQLLEQQKRLSVRDLANKFEKG 84 (494)
Q Consensus 63 a~L~~q~kRLSVRdLA~KFekg 84 (494)
-+++.++.++||.|||..|.=-
T Consensus 8 l~~L~~~g~vsv~eLa~~l~VS 29 (78)
T 1xn7_A 8 RDLLALRGRMEAAQISQTLNTP 29 (78)
T ss_dssp HHHHHHSCSBCHHHHHHHTTCC
T ss_pred HHHHHHcCCCcHHHHHHHHCcC
Confidence 4678899999999999999633
No 57
>1gqa_A Cytochrome C'; electron transport, heme; HET: HEC; 1.8A {Rhodobacter sphaeroides} SCOP: a.24.3.2
Probab=28.45 E-value=2.6e+02 Score=23.44 Aligned_cols=93 Identities=12% Similarity=0.052 Sum_probs=62.1
Q ss_pred cchHHHHHHHHHHHHHhhcccCCC---ChhhHHHHHHHHHHHH-Hhh-------h---hhh-----hhhHHHHHHHHHHH
Q 011054 103 LEKHVLLKKLRDALESLRGRVAGR---NKDDVEEAIAMVEALA-VQL-------T---QRE-----GELIQEKAEVKKLA 163 (494)
Q Consensus 103 Ler~vLLKkLr~~LesLrGRvaGr---nKddveeaismVeaLa-vql-------t---qrE-----~ELiQeK~EVkKlA 163 (494)
-+|+.++|.++..+..|.+=+-|. +.+.|..+..-+..++ ..+ | ..- -+.-++..+.++++
T Consensus 8 ~~Rq~~m~~m~~~~~~l~~m~kg~~~~d~~~~~~~A~~l~~~ag~~~~~~F~~gs~~~~~~~s~Akp~IW~~~~~F~~~~ 87 (130)
T 1gqa_A 8 EARKGYFSLVALEFGPLAAMAKGEMPYDAAAAKAHASDLVTLTKYDPSDLYAPGTSADDVKGTAAKAAIWQDADGFQAKG 87 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHSCGGGGGCTTCSTTTSSSCCBCTHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHhhhhhHhhCCCCCccccCCCcccCHHHHhCHHHHHHHH
Confidence 368899999999999999999898 5566777777777777 555 2 110 12345778888888
Q ss_pred HHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011054 164 DFLKKASEDAKKLVDEERAFARAEIESARAAVQRVEESL 202 (494)
Q Consensus 164 ~~lKqASeDAkkiV~eeRa~A~aEIE~ArAaV~Rve~al 202 (494)
.-|..|........ ... .+..++++..|++.-
T Consensus 88 ~~~~~aa~~l~~aa---~~g----~~~~~~a~~~v~~sC 119 (130)
T 1gqa_A 88 MAFFEAVAALEPAA---GAG----QKELAAAVGKVGGTC 119 (130)
T ss_dssp HHHHHHHHHHHHHH---TSC----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---Hhc----HHHHHHHHHHHHhHH
Confidence 88887766543322 222 445566776666543
No 58
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}
Probab=28.19 E-value=1.2e+02 Score=22.11 Aligned_cols=23 Identities=26% Similarity=0.521 Sum_probs=16.1
Q ss_pred ccCceeEEeeCCCCCCCCCCceeeEEE
Q 011054 288 ALGSYLRIKPCSNNGPELSKCSIQWYR 314 (494)
Q Consensus 288 ~LGS~L~i~~~~d~~~dlSkcsiQW~R 314 (494)
..|..+.+.....+.|. .|+|||
T Consensus 22 ~~G~~v~l~C~~~g~pp----~i~W~k 44 (95)
T 2ckn_A 22 HPGDLLQLRCRLRDDVQ----SINWLR 44 (95)
T ss_dssp CTTSCEEEECCEESSCC----EEEEEB
T ss_pred cCCCeEEEEEECCCCCC----ceEEEE
Confidence 35777777766555552 899999
No 59
>3k74_B Nanobody; immunoglobulin, antibiotic resista methotrexate resistance, NADP, one-carbon metabolism, oxidoreductase, trimethoprim resistance; 1.95A {Lama glama}
Probab=27.41 E-value=62 Score=25.20 Aligned_cols=36 Identities=17% Similarity=0.244 Sum_probs=21.4
Q ss_pred cCceeEEeeCCCCCCCCCCceeeEEEeccCCCccccc
Q 011054 289 LGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELI 325 (494)
Q Consensus 289 LGS~L~i~~~~d~~~dlSkcsiQW~Rv~~~gsk~e~I 325 (494)
.|..+.|...... .+.+.-.+.|||..+..+-.-|+
T Consensus 12 ~G~~vtL~C~~s~-~~~~~~~v~Wyrq~~g~~~~~l~ 47 (115)
T 3k74_B 12 PGGSLRLSCAASG-FTFNNYWMYWVRRAPGKGLEWVS 47 (115)
T ss_dssp TTCCEEEEEEECS-SCGGGSCEEEEEECTTCCEEEEE
T ss_pred CCCcEEEEEEEeC-ccccCCEEEEEEECCCCCeEEEE
Confidence 4666666554332 23456789999998754433443
No 60
>3tpk_A Immunoglobulin heavy chain antibody variable DOMA; immunoglobulin heavy chain domains, VHH, complementarity DET regions, CDR, oligomer-specific; 1.30A {Camelidae} PDB: 3ln9_A* 1zv5_A
Probab=27.40 E-value=1.2e+02 Score=24.82 Aligned_cols=36 Identities=17% Similarity=0.313 Sum_probs=21.7
Q ss_pred ccCceeEEeeCCCCCCCCCCceeeEEEeccCCCcccc
Q 011054 288 ALGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKREL 324 (494)
Q Consensus 288 ~LGS~L~i~~~~d~~~dlSkcsiQW~Rv~~~gsk~e~ 324 (494)
..|..+.|...... ...+.-.+.|||..+...-.-|
T Consensus 17 ~~G~~vtL~C~~s~-~~~~~~~v~Wyrq~~g~~~~~l 52 (136)
T 3tpk_A 17 QPGGSLRLSCTASG-YTFSQEFVIWFRQAPGKEREIV 52 (136)
T ss_dssp CTTCCEEEEEEEEE-SGGGCCEEEEEEECTTSCCEEE
T ss_pred ccCCCEEEEEEEcc-cccCCcEEEEEEECCCCCcEEE
Confidence 45777776554322 2345678999999884443334
No 61
>3qyc_A VH domain of IGG molecule; immunoglobulin V domain fold, antibody, immune system; 1.60A {Homo sapiens} PDB: 1ieh_A 1ohq_A 2uzi_H*
Probab=26.95 E-value=1.4e+02 Score=24.96 Aligned_cols=36 Identities=22% Similarity=0.353 Sum_probs=22.7
Q ss_pred ccCceeEEeeCCCCCCCCCCceeeEEEeccCCCcccc
Q 011054 288 ALGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKREL 324 (494)
Q Consensus 288 ~LGS~L~i~~~~d~~~dlSkcsiQW~Rv~~~gsk~e~ 324 (494)
..|..+.|...... .+++.-.+.|||..+..+-+-|
T Consensus 15 ~~G~svtL~C~~s~-~~~~~~~v~WyrQ~~g~~~~~L 50 (146)
T 3qyc_A 15 KPGGSLRLSCAASG-VRLSAYDMAWVRQAPGKGLEWV 50 (146)
T ss_dssp CTTCCEEEEEEEES-SCGGGCCEEEEEECTTSCEEEE
T ss_pred CCCCCEEEEEEeeC-CCcCCCEEEEEEECCCCCcEEE
Confidence 45777777654332 2355678999999885444444
No 62
>1in0_A YAJQ protein, HI1034; alpha and beta sandwich, structural genomics, structure 2 function project, S2F, unknown function; 2.14A {Haemophilus influenzae} SCOP: d.58.49.1 d.58.49.1
Probab=26.55 E-value=22 Score=32.81 Aligned_cols=18 Identities=39% Similarity=0.848 Sum_probs=16.9
Q ss_pred ccCCCChhhHHHHHHHHH
Q 011054 122 RVAGRNKDDVEEAIAMVE 139 (494)
Q Consensus 122 RvaGrnKddveeaismVe 139 (494)
||.|+++||+-++|+++-
T Consensus 131 RVtgKkrDDLQ~viallk 148 (163)
T 1in0_A 131 RVTGKSRDDLQAVIQLVK 148 (163)
T ss_dssp EEEESCHHHHHHHHHHHH
T ss_pred EEecCCHHHHHHHHHHHH
Confidence 899999999999999974
No 63
>1kil_E Complexin I snare-complex binding region; helix bound to four helix bundle, membrane protein; 2.30A {Rattus norvegicus} SCOP: h.1.15.1
Probab=26.23 E-value=24 Score=27.15 Aligned_cols=20 Identities=30% Similarity=0.363 Sum_probs=17.0
Q ss_pred cccccHHHHHHHHHHHHHHh
Q 011054 238 KVMDMEHELRALRIQLAEKS 257 (494)
Q Consensus 238 KvMDmE~El~~LR~ql~eKs 257 (494)
|--.||-|=+.+|++|..|.
T Consensus 28 Kh~kmE~eRE~mRq~IRdKY 47 (49)
T 1kil_E 28 KYAKMEAEREVMRQGIRDKY 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 34579999999999999885
No 64
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=25.60 E-value=6.5e+02 Score=27.02 Aligned_cols=92 Identities=21% Similarity=0.355 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHhhcccCCCChhhHHHH--HHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHH----hhHHHHHHHHH
Q 011054 106 HVLLKKLRDALESLRGRVAGRNKDDVEEA--IAMVEALAVQLTQREGELIQEKAEVKKLADFLKK----ASEDAKKLVDE 179 (494)
Q Consensus 106 ~vLLKkLr~~LesLrGRvaGrnKddveea--ismVeaLavqltqrE~ELiQeK~EVkKlA~~lKq----ASeDAkkiV~e 179 (494)
..+++|+-.-|+.++--+.|..+.|.+|- |.++|.- |.-=..=.-.|...+++|+.-|.. =|.|=++||++
T Consensus 117 ~~I~~k~g~~l~~v~~~~~~~~~~e~~e~~q~~~LekA---l~s~~~i~~~e~~~l~~L~~AL~kE~~~Rt~dE~~mi~~ 193 (526)
T 3iyk_A 117 DKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDILNKA---VTSYNKILTEEDLQMRRLATALQKEIGERTHAETVMVKE 193 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH---HHHHHHHHHHHHhHHHHHHHHHHHHHHhhcHHHHHHHHH
Confidence 35677888888888888888888877554 4444321 111111122344567788887765 46788899999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHH
Q 011054 180 ERAFARAEIESARAAVQRVEESLQE 204 (494)
Q Consensus 180 eRa~A~aEIE~ArAaV~Rve~al~E 204 (494)
=|.+ |++-+.||..=.++++|
T Consensus 194 yr~k----~~aL~~aIe~Er~~~~E 214 (526)
T 3iyk_A 194 YRDK----IDALKNAIEVERDGMQE 214 (526)
T ss_pred HHHH----HHHHHHHHHHHHhHHHH
Confidence 8876 44555555554444444
No 65
>1fo0_B Protein (BM3.3 T cell receptor beta-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_B* 2ol3_B* 1kb5_B 1kj2_B*
Probab=25.60 E-value=1.6e+02 Score=22.64 Aligned_cols=36 Identities=14% Similarity=0.156 Sum_probs=22.2
Q ss_pred cCceeEEeeCCCCCCCCCCceeeEEEeccCCCccccccc
Q 011054 289 LGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELISG 327 (494)
Q Consensus 289 LGS~L~i~~~~d~~~dlSkcsiQW~Rv~~~gsk~e~IsG 327 (494)
.|..+.|.....+ .+.-.|.|||..+.++-.-+|..
T Consensus 15 ~G~~vtL~C~~~~---~~~~~v~W~rq~~~~~~~~l~~~ 50 (112)
T 1fo0_B 15 RGQAVNLRCILKN---SQYPWMSWYQQDLQKQLQWLFTL 50 (112)
T ss_dssp TTCCEEEEEEESC---TTCCEEEEEEECTTCCEEEEEEC
T ss_pred cCCcEEEEEEeCC---CCCceEEEEEECCCCCCEEEEEE
Confidence 5677776554332 23457999999885444555543
No 66
>2qhl_A Novel immune-type receptor 10; immunoglobulin variable domain-like beta-sandwich, immune system; 1.56A {Ictalurus punctatus} PDB: 3b5t_A 2qjd_A 2qte_A 2qqq_A
Probab=25.01 E-value=2e+02 Score=21.89 Aligned_cols=51 Identities=16% Similarity=0.250 Sum_probs=27.6
Q ss_pred ccCceeEEeeCCC-CCCCCCCceeeEEEeccCCCcccccc---ccccccccCCCCcccc
Q 011054 288 ALGSYLRIKPCSN-NGPELSKCSIQWYRVPSEGGKRELIS---GATKSVYAPEPFDVGR 342 (494)
Q Consensus 288 ~LGS~L~i~~~~d-~~~dlSkcsiQW~Rv~~~gsk~e~Is---GAtk~~YAPEP~DVGr 342 (494)
..|..+.|..... .. +.-.|.|||..+.++-.-+|. +..++.|.|+ +.-||
T Consensus 12 ~~G~~v~L~C~~~~~~---~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~-~~~~R 66 (111)
T 2qhl_A 12 KRGENVTMECSMSKVK---DKDKLAWYRQSFGKVPQYFVRYYSSNSGYKFAEG-FKDSR 66 (111)
T ss_dssp CTTCCEEECCBCTTCS---CGGGEEEEEECTTBCCEEEEEECSSSSCEEECTT-CCCTT
T ss_pred eCCCCEEEEEEccCCc---ccceEEEEEecCCCCCEEEEEEeccCCccccccC-CCCCc
Confidence 3467776655433 22 356799999987544444442 2234445543 22355
No 67
>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} SCOP: f.23.21.1
Probab=24.37 E-value=2.1e+02 Score=20.90 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=11.9
Q ss_pred HHHhhHHHHHHHHHHHHhHHHHHHHH
Q 011054 166 LKKASEDAKKLVDEERAFARAEIESA 191 (494)
Q Consensus 166 lKqASeDAkkiV~eeRa~A~aEIE~A 191 (494)
|+.|-..|..|+++.+..|...++.+
T Consensus 4 L~~Ar~ea~~Ii~~A~~~a~~~~~e~ 29 (61)
T 1l2p_A 4 LKKAKAEAQVIIEQANKRRSQILDEA 29 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443
No 68
>3iy0_H FAB 14, heavy domain; cryoem, neutralizing antibody, parvovirus, canine, feline, FAB footprint, immune system; 12.50A {Mus musculus}
Probab=24.16 E-value=1.6e+02 Score=23.03 Aligned_cols=36 Identities=14% Similarity=0.289 Sum_probs=21.8
Q ss_pred ccCceeEEeeCCCCCCCCCCceeeEEEeccCCCcccc
Q 011054 288 ALGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKREL 324 (494)
Q Consensus 288 ~LGS~L~i~~~~d~~~dlSkcsiQW~Rv~~~gsk~e~ 324 (494)
..|..+.|...... .+.+.-.+.|||..+...-+-|
T Consensus 13 ~~G~~vtL~C~~s~-~~~~~~~~~Wyrq~~g~~~~~l 48 (120)
T 3iy0_H 13 APGGGVKLSCGASG-YTFTNYDMNWVRQRPGAGLEWI 48 (120)
T ss_dssp CSSCCEEEEEEEES-SCGGGSCEEEEEEETTTEEEEE
T ss_pred cCCCCEEEEEEeEC-CCccCCeEEEEEECCCCCCEEE
Confidence 45667766544332 2345678999999884433334
No 69
>2otu_A FV light chain variable domain; antibody FV polyglutamine complex, immune system; 1.68A {Mus musculus} PDB: 2otw_A 2gsg_A
Probab=24.16 E-value=53 Score=25.35 Aligned_cols=35 Identities=17% Similarity=0.359 Sum_probs=21.2
Q ss_pred cCceeEEeeCCCCCCCCCCceeeEEEeccCCCccccc
Q 011054 289 LGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELI 325 (494)
Q Consensus 289 LGS~L~i~~~~d~~~dlSkcsiQW~Rv~~~gsk~e~I 325 (494)
.|..+.|........ +.-.|.|||..+.++-.-+|
T Consensus 15 ~G~~v~L~C~~~~~~--~~~~v~W~rq~~~~~~~~l~ 49 (115)
T 2otu_A 15 LGASAKLTCTLSSQH--STYTIEWYQQQPLKPPKYVM 49 (115)
T ss_dssp TTCCEEEEEEECGGG--TTCCEEEEEECTTSCCEEEE
T ss_pred CCCCEEEEEEecCCC--CCeEEEEEEeCCCCCceEEE
Confidence 567776655434322 45679999998754443344
No 70
>3t0v_A Immunoglobulin variable lambda domain; immunoglobulin fold, fluorogen activation, dimethylindole RE binding protein; HET: 1PE PE3; 1.45A {Homo sapiens} PDB: 3t0w_A* 3t0x_A* 3lrg_A 3lrh_A 2rhe_A
Probab=23.88 E-value=76 Score=25.57 Aligned_cols=38 Identities=18% Similarity=0.282 Sum_probs=23.6
Q ss_pred ccCceeEEeeCCCCCCCCCCceeeEEEeccCCCcccccc
Q 011054 288 ALGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELIS 326 (494)
Q Consensus 288 ~LGS~L~i~~~~d~~~dlSkcsiQW~Rv~~~gsk~e~Is 326 (494)
..|..+.|....... +++...+.|||..+..+-+-+|.
T Consensus 13 ~~G~~vtL~C~~s~~-~~~~~~v~Wyrq~~g~~~~~li~ 50 (123)
T 3t0v_A 13 TPGQKVTIFCSGSSS-NVEDNSVYWYQQFPGTTPKVLIY 50 (123)
T ss_dssp CTTCCEEEEEECCTT-TTTTSCEEEEEECTTSCCEEEEE
T ss_pred cCCCCEEEEEecCCC-ccCCCeEEEEEECCCCCCEEEEE
Confidence 357777776554432 34567899999987544444444
No 71
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=23.80 E-value=4.3e+02 Score=24.26 Aligned_cols=26 Identities=23% Similarity=0.219 Sum_probs=11.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhhHH
Q 011054 147 QREGELIQEKAEVKKLADFLKKASED 172 (494)
Q Consensus 147 qrE~ELiQeK~EVkKlA~~lKqASeD 172 (494)
+-+.+|.+-++++...-.-+++|..+
T Consensus 73 ~~~a~l~~~~a~l~~a~~~~~~a~~~ 98 (341)
T 3fpp_A 73 EVEATLMELRAQRQQAEAELKLARVT 98 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433
No 72
>2p45_B Antibody CAB-RN05; seMet phasing, camelid single-domain antibody, VHH, RNAse A, yeast surface display, hydrolase/immune system complex; 1.10A {Camelus dromedarius} PDB: 2p46_B 2p47_B 2p48_B 2p44_B 2p49_B 2p42_B 2p43_B 1bzq_K 3qsk_B 2p4a_B 1op9_A 1sjx_A 3qxt_A* 3qxu_A 3eba_A
Probab=23.48 E-value=85 Score=24.44 Aligned_cols=36 Identities=14% Similarity=0.315 Sum_probs=21.1
Q ss_pred cCceeEEeeCCCCCCCCCCceeeEEEeccCCCccccc
Q 011054 289 LGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELI 325 (494)
Q Consensus 289 LGS~L~i~~~~d~~~dlSkcsiQW~Rv~~~gsk~e~I 325 (494)
.|..+.|...... ...+.-.+.|||..+..+-.-+|
T Consensus 16 ~G~~vtL~C~~~~-~~~~~~~v~Wyrq~~~~~~~~l~ 51 (123)
T 2p45_B 16 AGGSLRLSCAASG-YAYTYIYMGWFRQAPGKEREGVA 51 (123)
T ss_dssp TTCCEEEEEEEES-CSSCCSEEEEEEECTTSCCEEEE
T ss_pred CCCCEEEEEEecC-ccCcCcEEEEEEECCCCCcEEEE
Confidence 4666666544332 12346789999998744333344
No 73
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=23.19 E-value=1.1e+02 Score=30.75 Aligned_cols=93 Identities=18% Similarity=0.353 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhhcccCCCChh--h-HHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHH
Q 011054 109 LKKLRDALESLRGRVAGRNKD--D-VEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLK---KASEDAKKLVDEERA 182 (494)
Q Consensus 109 LKkLr~~LesLrGRvaGrnKd--d-veeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lK---qASeDAkkiV~eeRa 182 (494)
+|-+|+-.+.++-.+.-|+.+ | |++-+++ --++-+-..++-+-+++-.+++.-+. ...+|+..+..+-+.
T Consensus 4 ~~~~r~~~~~~~~~~~~r~~~~~~~~~~~~~~----~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~ 79 (425)
T 2dq3_A 4 INLIREKPDYVKERLATRDKELVSLVDKVLEL----DKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKE 79 (425)
T ss_dssp HHHHHHCHHHHHHHHTTTCGGGHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHH
T ss_pred HHHHHhCHHHHHHHHHHhCCCchhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHH
Confidence 345555555555556666655 2 4444433 23333333333333344444444433 345666666555443
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 011054 183 FARAEIESARAAVQRVEESLQEHE 206 (494)
Q Consensus 183 ~A~aEIE~ArAaV~Rve~al~Eqe 206 (494)
-..+|....+....+++.+++.-
T Consensus 80 -~~~~~~~~~~~~~~~~~~~~~~~ 102 (425)
T 2dq3_A 80 -LKEEIDRLEEELRKVEEELKNTL 102 (425)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777776543
No 74
>2yc1_A Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_A 1dql_H 3cfi_C
Probab=22.66 E-value=65 Score=24.73 Aligned_cols=37 Identities=16% Similarity=0.281 Sum_probs=21.4
Q ss_pred ccCceeEEeeCCCCCCCCCCceeeEEEeccCCCccccc
Q 011054 288 ALGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELI 325 (494)
Q Consensus 288 ~LGS~L~i~~~~d~~~dlSkcsiQW~Rv~~~gsk~e~I 325 (494)
..|..+.|...-.. ...+.-.|.|||..+..+-.-+|
T Consensus 13 ~~G~~vtL~C~~~~-~~~~~~~v~Wyrq~~~~~~~~l~ 49 (117)
T 2yc1_A 13 QPGGSLRLSCTGSG-FTFDNYAMHWLRQVPGEGLEWVS 49 (117)
T ss_dssp CTTCCEEEEEEEES-SCGGGSCEEEEEECTTSCEEEEE
T ss_pred cCCCeEEEEEEecC-cccCCCeEEEEEECCCCCcEEEE
Confidence 35666666544332 22346789999998743333333
No 75
>2ftc_H L13MT, MRP-L13, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=22.58 E-value=44 Score=30.08 Aligned_cols=43 Identities=23% Similarity=0.405 Sum_probs=33.4
Q ss_pred eEEEeccCCCc--------cccccccccccccCCCCcccceeeeeeecCCcEEEE
Q 011054 311 QWYRVPSEGGK--------RELISGATKSVYAPEPFDVGRILQAEITYNGQQITL 357 (494)
Q Consensus 311 QW~Rv~~~gsk--------~e~IsGAtk~~YAPEP~DVGr~LqadI~~~g~k~~~ 357 (494)
+||=|..+|-. .-++-|-.||.|.|. .|.|.++ |+.|.+++.+
T Consensus 17 ~w~viDA~g~~LGRLAs~iA~~L~GKhKp~ytP~-~D~Gd~V---VViNaeki~~ 67 (148)
T 2ftc_H 17 IWYLLDGKMQPPGKLAAMASIRLQGLHKPVYHAL-SDCGDHV---VIMNTRHIAF 67 (148)
T ss_pred cEEEEeCCCCchHHHHHHHHHHHhccCCCCcCcc-ccCCCEE---EEEeceeeEe
Confidence 69888776533 245789999999998 7999886 5678877776
No 76
>1oaq_L Light chain; antibody, allergy, IGE, conformational diversity, multispecificity; 1.50A {Rattus rattus} SCOP: b.1.1.1 PDB: 1ocw_L 2bjm_L* 1oau_L* 1oar_L* 1oaz_L 1mfa_L* 1a6v_L* 1oax_L* 1oay_L* 1a6w_L* 1a6u_L 1dl7_L*
Probab=22.54 E-value=56 Score=25.37 Aligned_cols=39 Identities=15% Similarity=0.186 Sum_probs=23.9
Q ss_pred ccCceeEEeeCCCCCCCCCCceeeEEEeccCCCcccccc
Q 011054 288 ALGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELIS 326 (494)
Q Consensus 288 ~LGS~L~i~~~~d~~~dlSkcsiQW~Rv~~~gsk~e~Is 326 (494)
..|..+.|.......+..+.-.+.|||..+.++-.-+|.
T Consensus 13 ~~G~~v~L~C~~~~~~~~~~~~v~Wyrq~~~~~~~~l~~ 51 (120)
T 1oaq_L 13 SPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIG 51 (120)
T ss_dssp CTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEE
T ss_pred cCCCCEEEEEEeCCCccCCCCEEEEEEeCCCCCCeEEEE
Confidence 356777776654544432456799999987544344444
No 77
>2wzp_D Camelid VHH5; baseplate, viral protein; 2.60A {Lama glama} PDB: 2bse_D
Probab=22.50 E-value=72 Score=24.85 Aligned_cols=37 Identities=16% Similarity=0.296 Sum_probs=21.7
Q ss_pred ccCceeEEeeCCCCCCCCCCceeeEEEeccCCCccccc
Q 011054 288 ALGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELI 325 (494)
Q Consensus 288 ~LGS~L~i~~~~d~~~dlSkcsiQW~Rv~~~gsk~e~I 325 (494)
..|..+.|...... .+.+.-.+.|||..+..+-.-++
T Consensus 13 ~~G~~vtL~C~~~~-~~~~~~~v~W~rq~~g~~~~~l~ 49 (123)
T 2wzp_D 13 QAGGSLRLSCTASR-RTGSNWCMGWFRQLAGKEPELVV 49 (123)
T ss_dssp ETTCCEEEEEEESS-CCSSSEEEEEEECCSSSSCEEEE
T ss_pred cCCCcEEEEEEecC-CCccCcEEEEEEECCCCCCEEEE
Confidence 35667766554332 23356789999998743333333
No 78
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1
Probab=22.38 E-value=3.1e+02 Score=24.94 Aligned_cols=18 Identities=17% Similarity=0.230 Sum_probs=10.5
Q ss_pred CCChhhHHHHHHHHHHHH
Q 011054 125 GRNKDDVEEAIAMVEALA 142 (494)
Q Consensus 125 GrnKddveeaismVeaLa 142 (494)
|-++++|++.+.-.+.++
T Consensus 115 ~Ls~eei~~~~~~~~~~~ 132 (227)
T 1u00_A 115 GLTDSEIASMIKDSMSYA 132 (227)
T ss_dssp CCCHHHHHHHHHHHHHTH
T ss_pred CCCHHHHHHHHHHHHhhh
Confidence 456777777555544444
No 79
>3b9v_A Heavy chain variable domain; antibody engineering, phage display, immune system; 1.80A {Homo sapiens} PDB: 1fvc_B 3p9w_B 1fgv_H 2vh5_H*
Probab=22.15 E-value=71 Score=24.70 Aligned_cols=36 Identities=19% Similarity=0.324 Sum_probs=20.9
Q ss_pred cCceeEEeeCCCCCCCCCCceeeEEEeccCCCccccc
Q 011054 289 LGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELI 325 (494)
Q Consensus 289 LGS~L~i~~~~d~~~dlSkcsiQW~Rv~~~gsk~e~I 325 (494)
.|..+.|...-.. .+.+.-.+.|||..+..+-.-+|
T Consensus 14 ~G~~vtL~C~~~~-~~~~~~~v~W~rq~~~~~~~~l~ 49 (120)
T 3b9v_A 14 PGGSLRLSCAASG-FNIKDTYIGWVRRAPGKGEEWVA 49 (120)
T ss_dssp TTCCEEEEEEEES-SCGGGSEEEEEEECTTCCEEEEE
T ss_pred CCccEEEEEEeeC-ccccccEEEEEEECCCCCcEEEE
Confidence 4666666544332 12346789999998743333333
No 80
>2x1q_A Gelsolin nanobody; contractIle protein; 1.06A {Lama glama} PDB: 2x1p_A 2xa3_A 3k7u_A 3sn6_N* 3stb_A 2x1o_A 3k80_A 1ol0_A 1u0q_A 1qd0_A* 3ezj_B 3p0g_B* 1mvf_A 1t2j_A
Probab=22.05 E-value=1.1e+02 Score=24.22 Aligned_cols=37 Identities=16% Similarity=0.357 Sum_probs=20.8
Q ss_pred ccCceeEEeeCCCCCCCCCCceeeEEEeccCCCccccc
Q 011054 288 ALGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELI 325 (494)
Q Consensus 288 ~LGS~L~i~~~~d~~~dlSkcsiQW~Rv~~~gsk~e~I 325 (494)
..|..+.|...... ...+.-.|.|||..+..+-+-+|
T Consensus 13 ~~G~~vtL~C~~s~-~~~~~~~v~Wyrq~~g~~~~~l~ 49 (127)
T 2x1q_A 13 QPGGSLRLSCAASG-RTFSNYRMGWFRQAPGKEREFVA 49 (127)
T ss_dssp CTTCCEEEEEC-------CCSEEEEEEECTTSCCEEEE
T ss_pred cCCCCEEEEEEeCC-cccCCcEEEEEEECCCCCCEEEE
Confidence 45777777554332 22356789999998854444444
No 81
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=21.88 E-value=2.3e+02 Score=25.34 Aligned_cols=66 Identities=17% Similarity=0.179 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 011054 138 VEALAVQLTQREGELIQEKAEVKKLADFLKK--ASEDAKKLVDEERAFARAEIESARAAVQRVEESLQ 203 (494)
Q Consensus 138 VeaLavqltqrE~ELiQeK~EVkKlA~~lKq--ASeDAkkiV~eeRa~A~aEIE~ArAaV~Rve~al~ 203 (494)
++.+-.+|.+-+.+|-+-+.+..+.-.++++ +|..--.-...+...|++++++|++.+...+..|+
T Consensus 62 l~~a~a~l~~a~a~l~~a~~~~~r~~~L~~~g~~s~~~~~~a~~~~~~a~a~l~~a~a~l~~a~~~l~ 129 (277)
T 2f1m_A 62 YDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQANAAVTAAKAAVETARINLA 129 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 82
>1cpq_A Cytochrome C'; electron transport; HET: HEM; 1.72A {Rhodobacter capsulatus} SCOP: a.24.3.2 PDB: 1eky_A 1nbb_A* 1rcp_A* 1cpr_A*
Probab=21.55 E-value=2.4e+02 Score=23.58 Aligned_cols=94 Identities=14% Similarity=0.167 Sum_probs=58.1
Q ss_pred cchHHHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHH---HHhh-----hhh---hh------hhHHHHHHHHHHHHH
Q 011054 103 LEKHVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEAL---AVQL-----TQR---EG------ELIQEKAEVKKLADF 165 (494)
Q Consensus 103 Ler~vLLKkLr~~LesLrGRvaGrnKddveeaismVeaL---avql-----tqr---E~------ELiQeK~EVkKlA~~ 165 (494)
=+|+.++|.++..+..|.+=+-|...-|-+.+..-.+.| +..+ |.. ++ ++-++..+.++++.-
T Consensus 8 ~~Rq~~m~~m~~~~~~l~~m~kg~~~~d~~~~~~~A~~l~~~a~~~~F~~gs~~~~~~g~s~A~p~IW~~~~~F~~~~~~ 87 (129)
T 1cpq_A 8 EAREAYFKSLGGSMKAMTGVAKAFDAEAAKVEAAKLEKILATDVAPLFPAGTSSTDLPGQTEAKAAIWANMDDFGAKGKA 87 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTCCCGGGCCTTCSTTTSTTTCCBCTHHHHSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhcccCCCCCCCcccccCCccccCHHHHhCHHHHHHHHHH
Confidence 368899999999999999999999555544444444444 3333 110 01 244577888888888
Q ss_pred HHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011054 166 LKKASEDAKKLVDEERAFARAEIESARAAVQRVEESL 202 (494)
Q Consensus 166 lKqASeDAkkiV~eeRa~A~aEIE~ArAaV~Rve~al 202 (494)
|..|....-... ... ..+..++++..|++.-
T Consensus 88 ~~~aa~~L~~aA---~~g---D~~~~~~a~~~v~~~C 118 (129)
T 1cpq_A 88 MHEAGGAVIAAA---NAG---DGAAFGAALQKLGGTC 118 (129)
T ss_dssp HHHHHHHHHHHH---HHT---CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---hcC---CHHHHHHHHHHHHhHH
Confidence 887766543222 111 2455666777666543
No 83
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=21.33 E-value=73 Score=26.07 Aligned_cols=20 Identities=20% Similarity=0.496 Sum_probs=15.9
Q ss_pred HHHHHHhcccchhHhHHHhh
Q 011054 63 AQLLEQQKRLSVRDLANKFE 82 (494)
Q Consensus 63 a~L~~q~kRLSVRdLA~KFe 82 (494)
-+++.++.++||.|||..|.
T Consensus 8 l~~L~~~g~vsv~eLA~~l~ 27 (87)
T 2k02_A 8 RDMLALQGRMEAKQLSARLQ 27 (87)
T ss_dssp HHHHHHSCSEEHHHHHHHTT
T ss_pred HHHHHHcCCCcHHHHHHHHC
Confidence 35777888888888888885
No 84
>1qfw_M FV, antibody (anti beta subunit) (light chain); glycoprotein hormone; HET: NAG; 3.50A {Mus musculus} SCOP: b.1.1.1
Probab=21.25 E-value=80 Score=23.94 Aligned_cols=35 Identities=17% Similarity=0.342 Sum_probs=21.7
Q ss_pred cCceeEEeeCCCCCCCCCCceeeEEEeccCCCcccccc
Q 011054 289 LGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELIS 326 (494)
Q Consensus 289 LGS~L~i~~~~d~~~dlSkcsiQW~Rv~~~gsk~e~Is 326 (494)
.|..+.+.......+ .-.|.|||..+.++-..+|.
T Consensus 15 ~G~~v~L~C~~~~~~---~~~v~W~r~~~~~~~~~l~~ 49 (108)
T 1qfw_M 15 VGERVTLSCKASETV---DSFVSWYQQKPEQSPKLLIF 49 (108)
T ss_dssp TTCCEEEEEEESSCC---CSCEEEEEECTTSCCEEEEC
T ss_pred CCCCEEEEeeeCCCC---CcEEEEEEECCCCCCEEEEE
Confidence 466666665544444 35799999987544444444
No 85
>2h32_A Immunoglobulin IOTA chain; beta sheets, V and C-type IG folds, immune system; 2.70A {Homo sapiens}
Probab=21.13 E-value=81 Score=25.18 Aligned_cols=38 Identities=26% Similarity=0.461 Sum_probs=23.3
Q ss_pred ccCceeEEeeCCCCCCCCCCceeeEEEeccCCCccccc
Q 011054 288 ALGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELI 325 (494)
Q Consensus 288 ~LGS~L~i~~~~d~~~dlSkcsiQW~Rv~~~gsk~e~I 325 (494)
..|..+.|........+.+.-.+.|||..+..+-.-+|
T Consensus 13 ~~G~~vtL~C~~s~~~~~~~~~v~Wyrq~~g~~~~~l~ 50 (126)
T 2h32_A 13 ALGTTIRLTCTLRNDHDIGVYSVYWYQQRPGHPPRFLL 50 (126)
T ss_dssp ETTCCEEEEEEECTTSCGGGCEEEEEEECTTSCCEEEE
T ss_pred CCCCCEEEEEEecCCCccccceEEEEEECCCCCCEEEE
Confidence 45777777655443323456789999998754434444
No 86
>1tvd_A T cell receptor, ES204 V delta; immunoreceptor, TCR, delta chain, variable domain; 1.90A {Homo sapiens} SCOP: b.1.1.1
Probab=21.06 E-value=70 Score=24.51 Aligned_cols=36 Identities=17% Similarity=0.220 Sum_probs=20.1
Q ss_pred cCceeEEeeCCCCCCCCCCceeeEEEeccCCCcccccc
Q 011054 289 LGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELIS 326 (494)
Q Consensus 289 LGS~L~i~~~~d~~~dlSkcsiQW~Rv~~~gsk~e~Is 326 (494)
.|..+.+...-. +..+.-.|.|||..+..+-.-++.
T Consensus 14 ~G~~vtL~C~~~--~~~~~~~v~W~r~~~~~~~~~l~~ 49 (116)
T 1tvd_A 14 SGSEVVLLCTYD--TVYSNPDLFWYRIRPDYSFQFVFY 49 (116)
T ss_dssp TTCCEEECCEEE--CCSSSCCEEEEEECTTSCEEEEEE
T ss_pred cCCeEEEEeEeE--cCCCCcEEEEEEeCCCCCcEEEEE
Confidence 455555543322 223456799999987443333443
No 87
>3k3q_A Llama AA1 VHH domain; llama, VHH, antibody, BONT, cell junction, cell membrane, cytoplasm, disulfide bond, hydrolase; 2.60A {Lama glama} SCOP: b.1.1.0
Probab=20.85 E-value=2.5e+02 Score=23.73 Aligned_cols=37 Identities=14% Similarity=0.307 Sum_probs=22.5
Q ss_pred ccCceeEEeeCCCCCCCCC-----------CceeeEEEeccCCCccccc
Q 011054 288 ALGSYLRIKPCSNNGPELS-----------KCSIQWYRVPSEGGKRELI 325 (494)
Q Consensus 288 ~LGS~L~i~~~~d~~~dlS-----------kcsiQW~Rv~~~gsk~e~I 325 (494)
..|..+.|...... ..++ .-.+.|||..+..+-+-||
T Consensus 16 ~~G~~vtL~C~~s~-~~~~~~~~~~~~~~~~~~v~WyrQ~pg~~p~~L~ 63 (151)
T 3k3q_A 16 QAGKSLRLSCAISG-LAFDGGAMGSEHRLTAGAMGWFRQAPGKDREFVA 63 (151)
T ss_dssp ETTCCEEEEEEEES-CCCSSTTTCGGGTTSCCEEEEEEECTTSCEEEEE
T ss_pred CCCCCEEEEEEEeC-ccccccccccccccCCeeEEEEEECCCCCcEEEE
Confidence 35777777654332 2233 5589999999854444444
No 88
>3u6r_L Antibody 1:7 (light chain); IG-like domain, neutralizing single chain FV, immune system; 2.67A {Homo sapiens}
Probab=20.64 E-value=1.9e+02 Score=24.09 Aligned_cols=36 Identities=17% Similarity=0.260 Sum_probs=22.4
Q ss_pred ccCceeEEeeCCCCCCCCCCceeeEEEeccCCCcccccc
Q 011054 288 ALGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELIS 326 (494)
Q Consensus 288 ~LGS~L~i~~~~d~~~dlSkcsiQW~Rv~~~gsk~e~Is 326 (494)
..|..+.|.......+ .-.|.|||..+...-..+|.
T Consensus 13 ~~G~~vtL~C~~s~~~---~~~v~Wyrq~~g~~~~~li~ 48 (143)
T 3u6r_L 13 SPGERATLSCRASQSV---NKYLAWYQQKPGQAPRLLIY 48 (143)
T ss_dssp CTTCCEEEEEEESSCC---TTCEEEEEECTTSCCEEEEE
T ss_pred eCCCCEEEEEEECCCC---ceeeEEEEECCCCCCEEEEE
Confidence 3577777766544433 45799999987544444543
No 89
>1kxt_B Immunoglobulin VHH fragment; alpha 8 beta 8, beta barrel, hydrolase, immune system; 2.00A {Camelus dromedarius} SCOP: b.1.1.1
Probab=20.56 E-value=1.1e+02 Score=24.30 Aligned_cols=37 Identities=19% Similarity=0.296 Sum_probs=22.3
Q ss_pred ccCceeEEeeCCCCCCCCCCceeeEEEeccCCCccccc
Q 011054 288 ALGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELI 325 (494)
Q Consensus 288 ~LGS~L~i~~~~d~~~dlSkcsiQW~Rv~~~gsk~e~I 325 (494)
..|..+.|...... .+.+.-.+.|||..+..+-.-+|
T Consensus 13 ~~G~~vtL~C~~s~-~~~~~~~v~Wyrq~~g~~~~~l~ 49 (127)
T 1kxt_B 13 QAGGSLRLSCAASG-YTFSSYPMGWYRQAPGKECELSA 49 (127)
T ss_dssp CTTCCEEEEEEEC---CCSSSCEEEEEECTTSCEEEEE
T ss_pred eCCCCEEEEeEecC-CCccceEEEEEEECCCCCcEEEE
Confidence 45777777554332 23356789999998854444444
No 90
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=20.22 E-value=3.9e+02 Score=22.51 Aligned_cols=83 Identities=24% Similarity=0.318 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccHHHHHHHHHHHHh
Q 011054 153 IQEKAEVKKLADFLKKASEDAKKLVDEER---AFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARR 229 (494)
Q Consensus 153 iQeK~EVkKlA~~lKqASeDAkkiV~eeR---a~A~aEIE~ArAaV~Rve~al~Eqe~~s~~s~kqd~e~L~~EvqEARR 229 (494)
..+|+-+.-=-.-++.+.+|-|.=.++|. ..+.++|...|-.| .+-.- .+.-=...++.|++|+.=-|+
T Consensus 33 ~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~l-------D~~~l-~r~dLE~~iesL~eEl~FLKk 104 (119)
T 3ol1_A 33 TNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDV-------DNASL-ARLDLERKVESLQEEIAFLKK 104 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcc-------cHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 33444333333445566677666666553 33334444443332 22111 111111256777777766444
Q ss_pred hhhccCCccccccHHHHHHHHHHHH
Q 011054 230 IKMLHQPSKVMDMEHELRALRIQLA 254 (494)
Q Consensus 230 IKmLH~PSKvMDmE~El~~LR~ql~ 254 (494)
+ | |-||..||.||+
T Consensus 105 ~---h--------eeEl~eLq~qi~ 118 (119)
T 3ol1_A 105 L---H--------EEEIQELQAQIQ 118 (119)
T ss_dssp H---H--------HHHHHHHHSCC-
T ss_pred H---H--------HHHHHHHHHHhc
Confidence 3 3 568888887765
No 91
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B
Probab=20.22 E-value=90 Score=25.21 Aligned_cols=26 Identities=12% Similarity=0.062 Sum_probs=19.1
Q ss_pred cCceeEEeeCCCCCCC--CCCceeeEEE
Q 011054 289 LGSYLRIKPCSNNGPE--LSKCSIQWYR 314 (494)
Q Consensus 289 LGS~L~i~~~~d~~~d--lSkcsiQW~R 314 (494)
.|+.+.+.....+.|. .+.-.|+|||
T Consensus 16 ~G~~v~L~C~~~~~p~~~~~~~~v~W~k 43 (202)
T 3bp6_B 16 VGSSVSLECDFDRRECTELEGIRASLQK 43 (202)
T ss_dssp TTSCEEEEEEECTTC---CTTEEEEEEE
T ss_pred CCCcEEEEEEecCCCCCCccceEEEEEc
Confidence 5777777776676665 6667899999
Done!